<?xml version="1.0" encoding="ISO-8859-1"?>
<GTH_output xmlns="http://www.genomethreader.org/GTH_output/" GTH_XML_version="1.1">
  <header xmlns="http://www.genomethreader.org/GTH_output/header/">
    <source program="GenomeThreader" version="0.9.54" build_date="2006-07-28 11:55:15" run_date="2009-12-01 10:20:28"/>
    <gDNA_template_files>
      <temp_name>/tmp/bac-submission-temp-C02HBa0236E02-u8qcS/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs</temp_name>
    </gDNA_template_files>
    <reference_files>
      <file ref_name="/tmp/bac-submission-temp-C02HBa0236E02-u8qcS/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" type="ESTcDNA"/>
    </reference_files>
    <splice_site_parameters parameter_type="Bayesian" species="arabidopsis"/>
    <parameters>
      <parameter name="bssmfile" value="arabidopsis"/>
      <parameter name="scorematrixfile" value="BLOSUM62"/>
      <parameter name="searchmode" value="forward=True,reverse=True)"/>
      <parameter name="translationtable" value="1"/>
      <parameter name="frompos" value="0"/>
      <parameter name="topos" value="0"/>
      <parameter name="width" value="0"/>
      <parameter name="verbose" value="False"/>
      <parameter name="skipalignmentout" value="False"/>
      <parameter name="showintronmaxlen" value="120"/>
      <parameter name="minorflen" value="64"/>
      <parameter name="showseqnums" value="False"/>
      <parameter name="gs2out" value="False"/>
      <parameter name="maskpolyatails" value="False"/>
      <parameter name="noautoindex" value="False"/>
      <parameter name="minmatchlen" value="20"/>
      <parameter name="seedlength" value="16"/>
      <parameter name="exdrop" value="2"/>
      <parameter name="online" value="False"/>
      <parameter name="inverse" value="False"/>
      <parameter name="exact" value="False"/>
      <parameter name="chainwf" value="0.500000"/>
      <parameter name="gcmaxgapwidth" value="1000000"/>
      <parameter name="gcmincoverage" value="50"/>
      <parameter name="introncutout" value="False"/>
      <parameter name="autointroncutout" value="0"/>
      <parameter name="icinitialdelta" value="50"/>
      <parameter name="iciterations" value="2"/>
      <parameter name="icdeltaincrease" value="50"/>
      <parameter name="icminremintronlen" value="10"/>
      <parameter name="nou12intronmodel" value="False"/>
      <parameter name="u12donorprob" value="0.990000"/>
      <parameter name="u12donorprob1mism" value="0.900000"/>
      <parameter name="probies" value="0.500000"/>
      <parameter name="probdelgen" value="0.030000"/>
      <parameter name="identityweight" value="2.000000"/>
      <parameter name="mismatchweight" value="-2.000000"/>
      <parameter name="undetcharweight" value="0.000000"/>
      <parameter name="deletionweight" value="-4.000000"/>
      <parameter name="dpminexonlen" value="5"/>
      <parameter name="dpminintronlen" value="50"/>
      <parameter name="shortexonpenal" value="100"/>
      <parameter name="shortintronpenal" value="100"/>
      <parameter name="wzerotransition" value="80"/>
      <parameter name="wdecreasedoutput" value="80"/>
      <parameter name="leadcutoffsmode" value="RELAXED"/>
      <parameter name="termcutoffsmode" value="STRICT"/>
      <parameter name="cutoffsminexonlen" value="5"/>
      <parameter name="scoreminexonlen" value="50"/>
      <parameter name="minaveragessp" value="0.500000"/>
      <parameter name="minalignmentscore" value="0.900000"/>
      <parameter name="maxalignmentscore" value="1.000000"/>
      <parameter name="mincoverage" value="0.900000"/>
      <parameter name="maxcoverage" value="100.000000"/>
      <parameter name="intermediate" value="False"/>
      <parameter name="sortags" value="False"/>
      <parameter name="sortagswf" value="1.000000"/>
      <parameter name="first" value="0"/>
      <parameter name="exondistri" value="False"/>
      <parameter name="introndistri" value="False"/>
      <parameter name="refseqcovdistri" value="False"/>
    </parameters>
    <overall_reference_type>ESTcDNA</overall_reference_type>
  </header>
  <alignment_module>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0236E02-u8qcS/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E565350" ref_strand="+" ref_description="SGN-E565350 [3791]">
      <seq>gtcatttgctcttgacaaaaaacttgaaaaatcattcttggagcttgcaataaattgtgcatctgttatttgctgccggtccactcctaaacaaaaagctcttatatgcaggttaccagactggtgaaagttgaaacacaccgaattacattagcaattggggatggggcaaatgatgtaagcatgctgcaagaggctgatgttggggttggcatcagtggtgttgaaggaatgcaggctgtcatgtcaagtgattatgcaatagctcaattccgttttcttgagcgcttgttattggtccatggccactggtgctacaggagaatatcgatgatgctatgctacttcttttacaagaacatcgccttcgggttgacccttttctggttcgagggctttgcttctttctctggccgacctgcttatcctgactggtatatgtcattcatatcctgtgttcttcacatcgcttcctgtgatttgctcctcggtgtccttgatcagggatgtttctgccaactatgtctcgagtttcctaag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0236E02-u8qcS/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0236E02.1" temp_strand="+" temp_description="C02HBa0236E02.1  AC215430.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0236E02 sequenced_by:kribb upload_account_name:korea">
        <position start="151" stop="2961"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="451" g_stop="553" g_length="103"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="103" r_length="103" r_score="0.971"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="554" i_stop="671" i_length="118">
            <donor d_prob="0.407" d_score="0.98"/>
            <acceptor a_prob="0.689" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="672" g_stop="805" g_length="134"/>
          <reference_exon_boundary r_type="cDNA" r_start="104" r_stop="237" r_length="134" r_score="0.985"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="806" i_stop="2044" i_length="1239">
            <donor d_prob="1.000" d_score="0.98"/>
            <acceptor a_prob="0.868" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="2045" g_stop="2143" g_length="99"/>
          <reference_exon_boundary r_type="cDNA" r_start="238" r_stop="336" r_length="99" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="2144" i_stop="2467" i_length="324">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.921" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="2468" g_stop="2659" g_length="192"/>
          <reference_exon_boundary r_type="cDNA" r_start="337" r_stop="531" r_length="195" r_score="0.917"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0236E02.1" gen_strand="+" ref_id="SGN-E565350" ref_strand="+">
        <total_alignment_score>0.960</total_alignment_score>
        <cumulative_length_of_scored_exons>528</cumulative_length_of_scored_exons>
        <coverage percentage="0.978" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0236E02.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E565350" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="451" e_stop="553"/>
          <exon e_start="672" e_stop="805"/>
          <exon e_start="2045" e_stop="2143"/>
          <exon e_start="2468" e_stop="2659"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTCATTTGCTCTTGACAAAAAACTAGAAAAATCGTTCTTGGAGCTTGCAATAAATTGTGCATCTGTTATTTGCTGCCGCTCCACTCCTAAACAAAAAGCTCTTGTGGGTGCTCTCCCTTACAGTTTTATATTTAGAGAAATTTTTTCTTGAGCTGTGTACAAAGTTTGTTCAATATTTTGTTTTGTTGGCCATTTGAATAATCTGACAGAAATATTTGAAGATATGCAGGTTACCAGACTGGTGAAAGTTGAAACACACCGAACTACATTAGCAATTGGGGATGGGGCAAATGATGTAAGCATGCTACAAGAGGCTGATGTTGGGGTTGGCATCAGTGGTGTTGAAGGAATGCAGGTTAAATATTTTTGTCTAGTTCTTCCTCTTTTGTATTATCCTTTTTCCTTCCTCCATTTCTCAGCATTTGGACCCTTCCCTTCCCTTTTCTTCGTTGTCCCACTTCACTTTACCTTTTCCTCGTTAGGGGTGGATATCTTTCCTCAAGTGGGGGTTTGGGTGAGAAATTAGGTAGTACCTTTGGCTGTCCTGTTTTTTCTGTACATATTACCATATCTATTCTCCCTCGATTGCGAGCACGTGTAATTTTGATATCTTTTATAAGGTCAGTTGGAGGCCTAAAAAGCTACTGAAAATGAGGATATAACTACATCATGCAACTGTAATATATTTTTCAGGGAAAAAACATGCAGTGTAAGACCCACCGGCACATGACTGTTTGATTATATAATGTAGTTTTTTTGGCACTCTACTCTTTCTATTGTATTATTTTTTCTGCATGAATTAACTTTCTGAGCAGAAACAAACTCTCTGTCTAATGAACTTGATGATAATTGTGTCTTCTACTTGGTGTGTTGCATGTCCACAAATTTCAAGTTCTTAATGTAAGAATTCTGCTAGCCCAGTAGCTGCTTATGATTGGTCTGCATTATGGATAGTCCGACTTTACAAATTGTAGCAAGCTTGAATTTAGTACGTTTTTATTCATCATTAATCATTGTTCTGGAGGATTAGGAATTTATAATCAAGGAGTCGAGACTTAATGAAGAACAGAAGTAACGTGCAGTACTTTAGTATATATTAGCTCTTTTGTGTGAGACACTTTTCCTCTGGAGCGCCTTATAACTGTTTCGTGTTCAGATTTGATGAATGGTTTCTCAGTTAACTTCTCTATATTTTTAGATTAACATTTTATTTTCTAACTTCCCATGTAAAACTTTTTATGCTTCTATATAGATGTGAATTGCATTAGCATGACAAACTGTCATTGCCCAAAGATGTATTGGCGTCGTTTCTCATTTCAACATTCTGCCATTGATATGGATTTTTGATTTAGCAGGAGCTGTAACATTGTTTTCCTCTTTCATTTGCTGCTGTTTTTTTGGGCATAAATATTATCTACGAAGTCGGTCAATGCTTAGAGTCATAAGCTTTTTCCAGAAGACATTCTGTTTTCTTGTCTCTCTTGATAGACAGTGATTTCTAATTGTGTAGTAGGCAATATGAGCACATATGCTTCTGCCTAACAATGCCAATGTTTTAGAGGAGTTAAACTGATGATTCTGCAAATCTTATTAGGCTGTCATGTCAAGTGATTATGCAATAGCTCAATTCCGTTTTCTTGAGCGCTTGTTATTGGTCCATGGCCACTGGTGCTACAGGAGAATATCGATGATGGTAAGTATTCAATATCTCTTCTTGGTGAAATAAAAATAAAATTGGATATGACCAGAAACCACATCAGGCATTTCGTTCATCTTGAATTGTACCCTTTTTTTAAACCTTATTTGTAAAAACTGAATTGATGTAATTAACATTTGCAGGATTGAGTTGAATATTTTTATTTAAACAGGCGTGCAAACATAATTATTTTAGCAGGCTTACAGTTTTCTTAAACCATTAAGAAGTATGACACATTATAAAGTGAATAGCCAGTTTCATGTTTGGTTTTGAATTAGAGACATTTATGATCTTCTTAATATCACCTCGGCATGGTTGCAGCTATGCTACTTCTTTTACAAGAACATCGCCTTCGGGTTGACCCTTTTCTGGTTCGAGGGCTTTGCTTCTTTCTCTGGCCGACCTGCTTATAATGACTGGTATATGTCATT-ATATAATGTGTTCTTCACATCGCTTCCTGTGA-TTGCT-CTCGGTGTCTTTGATCA-GGATGTTTCTGCCCGCCTATGTCTCGAG</genome_strand>
        <mrna_strand>GTCATTTGCTCTTGACAAAAAACTTGAAAAATCATTCTTGGAGCTTGCAATAAATTGTGCATCTGTTATTTGCTGCCGGTCCACTCCTAAACAAAAAGCTCTT......................................................................................................................ATATGCAGGTTACCAGACTGGTGAAAGTTGAAACACACCGAATTACATTAGCAATTGGGGATGGGGCAAATGATGTAAGCATGCTGCAAGAGGCTGATGTTGGGGTTGGCATCAGTGGTGTTGAAGGAATGCAG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCTGTCATGTCAAGTGATTATGCAATAGCTCAATTCCGTTTTCTTGAGCGCTTGTTATTGGTCCATGGCCACTGGTGCTACAGGAGAATATCGATGATG....................................................................................................................................................................................................................................................................................................................................CTATGCTACTTCTTTTACAAGAACATCGCCTTCGGGTTGACCCTTTTCTGGTTCGAGGGCTTTGCTTCTTTCTCTGGCCGACCTGCTTATCCTGACTGGTATATGTCATTCATATCCTGTGTTCTTCACATCGCTTCCTGTGATTTGCTCCTCGGTGTCCTTGATCAGGGATGTTTCTG-CCAACTATGTCTCGAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0236E02-u8qcS/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E425597" ref_strand="+" ref_description="SGN-E425597 [STM-45-E20]">
      <seq>caaatccaaaatgagcttaatcaaatcctttttttccagggatgttttaagaatgttacaatgataataaatttcacctcaaaatgttagtttctactttcctagccccattcactcattattgttaaatatgtctactttacacaacttaattaactttacaaattgaacagtcatttatgtaatgtgacaaactacaaactattcttgaagatgtactttttgtttgcctctatcactggactcctcagcaaagtcactgtttaaactttcgaatcgattcctttgaatctgatcatgatacataggatggaactctgtttgaaatgccctgtgcgtaacgtatggtaacaaagtggcaacgacaaccacaagtgtgacaagccaatagaaaggactcggagcacaagcttccacaagaattttgtacgcggttgtagatattataggcgaaagagagccataaacaactaaaaacacgtaccaaatggcaatgctaccccaaataaagaagtgctgaatccaagtgaagtagttgatagagattgccatttgacaattgactgtccacaccacacacgtgtacatcatcactccgaggactccgtagtcaactggttgaccatctttccggaatacttgatgcgcgagtgaattg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0236E02-u8qcS/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0236E02.1" temp_strand="-" temp_description="C02HBa0236E02.1  AC215430.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0236E02 sequenced_by:kribb upload_account_name:korea">
        <position start="4295" stop="3086"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="4017" g_stop="3386" g_length="632"/>
          <reference_exon_boundary r_type="cDNA" r_start="17" r_stop="658" r_length="642" r_score="0.908"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0236E02.1" gen_strand="-" ref_id="SGN-E425597" ref_strand="+">
        <total_alignment_score>0.908</total_alignment_score>
        <cumulative_length_of_scored_exons>632</cumulative_length_of_scored_exons>
        <coverage percentage="0.960" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0236E02.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E425597" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="4017" e_stop="3386"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTAAATCAAATCCTTTACCAAAAGGGATGTTTTTAGAATGTTACAATGATAATAAATTCCACCTCAAAATGTTAGTTTCTACTTTCCTAGCCCTATTCACTCAGTATTGTT--ATATATCTACTTTACACAACTTGATTAACTTTACAAATTAAACAGTCAATTA--TAAACT-ACAAACT--AAA-TA---TTAAAGATCTATCTTTTGTTTGCCTCTGTCACTGGACTCCTCAGAAAAGTCACTGTTTAAACTTTCGAATTGTTTCCTTTGAATCTGATCATGGTACATAGGATGGAACTGTGTTTGAAATGCCCTGTACGTAACGTATGGTAACAAAGTGGCAACGACAACCAGGAGTGTGACAAGCCAAAAGAAAGGACTCGGAGCACAAGCTTCCACAAGAATTTTGTACGCGGTTGTAGATATTATAGGCGAAAGAGAGCCATAAACAACTAAAAACACGTACCAAATGGCAATGCTGCCCCAAATGAAGAAGTGCTGAATCCAAGTGAAGTAGTTGATAGAGATTGCCATTTGACAATTGACTGTCCACACCACACACGTGTACATCATCACCCCGAGGACTCCGTAGTCAACTGGTTGACCATCTTTTCGGAATACTTGATGCACGAGTGAATTG</genome_strand>
        <mrna_strand>TT-AATCAAATCCTTTTTTTCCAGGGATGTTTTAAGAATGTTACAATGATAATAAATTTCACCTCAAAATGTTAGTTTCTACTTTCCTAGCCCCATTCACTCATTATTGTTAAATATGTCTACTTTACACAACTTAATTAACTTTACAAATTGAACAGTCATTTATGTAATGTGACAAACTACAAACTATTCTTGAAGATGTACTTTTTGTTTGCCTCTATCACTGGACTCCTCAGCAAAGTCACTGTTTAAACTTTCGAATCGATTCCTTTGAATCTGATCATGATACATAGGATGGAACTCTGTTTGAAATGCCCTGTGCGTAACGTATGGTAACAAAGTGGCAACGACAACCACAAGTGTGACAAGCCAATAGAAAGGACTCGGAGCACAAGCTTCCACAAGAATTTTGTACGCGGTTGTAGATATTATAGGCGAAAGAGAGCCATAAACAACTAAAAACACGTACCAAATGGCAATGCTACCCCAAATAAAGAAGTGCTGAATCCAAGTGAAGTAGTTGATAGAGATTGCCATTTGACAATTGACTGTCCACACCACACACGTGTACATCATCACTCCGAGGACTCCGTAGTCAACTGGTTGACCATCTTTCCGGAATACTTGATGCGCGAGTGAATTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0236E02-u8qcS/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E420647" ref_strand="+" ref_description="SGN-E420647 [STM-31-F19]">
      <seq>ttatgaaattacaactactccatgcaggaagaagaatatttttctcctagctttagcagctactcgtcaaatagagtggctgagattgccggaaaaatctccgatgaaattaaatgtgattctgagttgatagaagagaacgttgacggtgctgaaggagatgaagattttgaattctctttggtatgtgaaaatccagaggattcggtcggtgtattccccttcgaccgtcaaatccagcctatttaccccgttttcaaccgcgatctgttactaaacgacgtttcttatgacgtagatcgcgaaggtgttaacggtgaatcgtcggaaaacgtcaatagttcagttcaagtttcgttaaaggatttattcttagaagaacgggaaccgctgtcgtcatcatcttccgaggtcgatgagttggagagtgtacctccgggaacgtattgtgtatggaagccgaatatagccgagccttcaccgagcagatgtaagaagagtaattcaacgggatcggcgtttaagcggtggaatattcgagatttgatgcgccggagcaacagtgacggtaaggacagttttgtatttctgacaccggaaaaaggattgaaaagcgaaacgtccaaagcaaaggactcagcagaggcgtctaaagttgccggaaaattgaaggcaaaggggcacagtagcagcggtaacaaggcatcttcgatgacggacgtttatttac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0236E02-u8qcS/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0236E02.1" temp_strand="+" temp_description="C02HBa0236E02.1  AC215430.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0236E02 sequenced_by:kribb upload_account_name:korea">
        <position start="6737" stop="8058"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="7037" g_stop="7758" g_length="722"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="730" r_length="730" r_score="0.922"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0236E02.1" gen_strand="+" ref_id="SGN-E420647" ref_strand="+">
        <total_alignment_score>0.922</total_alignment_score>
        <cumulative_length_of_scored_exons>722</cumulative_length_of_scored_exons>
        <coverage percentage="0.989" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0236E02.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E420647" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="7037" e_stop="7758"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTATGAAATTACAACTACTCACATGCAGGAAGACGAATTTTTTTCTCCGAGCTTTAGTAGCTACTCTTCAAATAGAGTGGCCGAGATTGCCGGAAAAATCTCCGATGAAATTAAGCGTGATTCTCAGGTGGTAGAAGAGAACGTTGACGGTGCCGATGGAGATGAAGATTTTGAATTCTCTTTGGTTTGTGAAAATCCAGAGGATTCGGTCGGCGTATTCCCCTTCGACCG-----T----CCTATTTACCCCGTTTTCAACCGCGATCTGATACCAAACGATGTTTCTTATGGCGTAGATCGAGAAGGTGTTAACGGTGAATCGTCGGAAAACGTCAATAGTTCAGTTCAAGTTTCGTTAAAGGATTTATTCTTAGAAGAACGGGAACCGCTGTCGTCGTCATCTTCCGAGGTCGATGAGTTGGAGAGTGTACCTCCGGGAACGTATTGTGTATGGAAGCCGAATATAACCGAGCCTTCACCAAGCAGATGTAAGAAGAGTAATTCAACGGGATCGGCGTTTAAGCGGTGGAATATCCGAGATTTGATGCGCCGGAGCAACAGTGACGGTAAGGACAGTTTTTTATTTCTGACGCCGGAAAAAGGATTGAGAAATGAAACATCCAAAGCAAAGGACTCAGCGGAAGCGTCTAAAATTGCCGGAAAATTGAAGGCAAAGGGCAACAGTAGCAGCGGTAACAAAACATCTTCGATGACGGACGTTTATTTAC</genome_strand>
        <mrna_strand>TTATGAAATTACAACTACTC-CATGCAGGAAGAAGAATATTTTTCTCCTAGCTTTAGCAGCTACTCGTCAAATAGAGTGGCTGAGATTGCCGGAAAAATCTCCGATGAAATTAAATGTGATTCTGAGTTGATAGAAGAGAACGTTGACGGTGCTGAAGGAGATGAAGATTTTGAATTCTCTTTGGTATGTGAAAATCCAGAGGATTCGGTCGGTGTATTCCCCTTCGACCGTCAAATCCAGCCTATTTACCCCGTTTTCAACCGCGATCTGTTACTAAACGACGTTTCTTATGACGTAGATCGCGAAGGTGTTAACGGTGAATCGTCGGAAAACGTCAATAGTTCAGTTCAAGTTTCGTTAAAGGATTTATTCTTAGAAGAACGGGAACCGCTGTCGTCATCATCTTCCGAGGTCGATGAGTTGGAGAGTGTACCTCCGGGAACGTATTGTGTATGGAAGCCGAATATAGCCGAGCCTTCACCGAGCAGATGTAAGAAGAGTAATTCAACGGGATCGGCGTTTAAGCGGTGGAATATTCGAGATTTGATGCGCCGGAGCAACAGTGACGGTAAGGACAGTTTTGTATTTCTGACACCGGAAAAAGGATTGAAAAGCGAAACGTCCAAAGCAAAGGACTCAGCAGAGGCGTCTAAAGTTGCCGGAAAATTGAAGGCAAAGGGGCACAGTAGCAGCGGTAACAAGGCATCTTCGATGACGGACGTTTATTTAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0236E02-u8qcS/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E406566" ref_strand="+" ref_description="SGN-E406566 [PPI-4-A2]">
      <seq>ttatgaaattacaactactccatgcaggaagaagaatatttttctcctagctttagcagctactcgtcaaatagagtggctgagattgccggaaaaatctccgatgaaattaaatgtgattctgagttgatagaagagaacgttgacggtgctgaaggagatgaagattttgaattctctttggtatgtgaaaatccagaggattcggtcggtgtattccccttcgaccgtcaaatccagcctatttaccccgttttcaaccgcgatctgttactaaacgacgtttcttatgacgtagatcgcgaaggtgttaacggtgaatcgtcggaaaacgtcaatagttcagttcaagtttcgttaaaggatttattcttagaagaacgggaaccgctgtcgtcatcatcttccgaggtcgatgagttggagagtgtacctccgggaacgtattgtgtatggaagccgaatatagccgagccttcaccgagcagatgtaagaagagtaattcaacgggatcggcgtttaagcggtggaatattcgagatttgatgcgccggagcaacagt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0236E02-u8qcS/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0236E02.1" temp_strand="+" temp_description="C02HBa0236E02.1  AC215430.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0236E02 sequenced_by:kribb upload_account_name:korea">
        <position start="6737" stop="7892"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="7037" g_stop="7592" g_length="556"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="564" r_length="564" r_score="0.923"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0236E02.1" gen_strand="+" ref_id="SGN-E406566" ref_strand="+">
        <total_alignment_score>0.923</total_alignment_score>
        <cumulative_length_of_scored_exons>556</cumulative_length_of_scored_exons>
        <coverage percentage="0.986" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0236E02.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E406566" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="7037" e_stop="7592"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTATGAAATTACAACTACTCACATGCAGGAAGACGAATTTTTTTCTCCGAGCTTTAGTAGCTACTCTTCAAATAGAGTGGCCGAGATTGCCGGAAAAATCTCCGATGAAATTAAGCGTGATTCTCAGGTGGTAGAAGAGAACGTTGACGGTGCCGATGGAGATGAAGATTTTGAATTCTCTTTGGTTTGTGAAAATCCAGAGGATTCGGTCGGCGTATTCCCCTTCGACCG-----T----CCTATTTACCCCGTTTTCAACCGCGATCTGATACCAAACGATGTTTCTTATGGCGTAGATCGAGAAGGTGTTAACGGTGAATCGTCGGAAAACGTCAATAGTTCAGTTCAAGTTTCGTTAAAGGATTTATTCTTAGAAGAACGGGAACCGCTGTCGTCGTCATCTTCCGAGGTCGATGAGTTGGAGAGTGTACCTCCGGGAACGTATTGTGTATGGAAGCCGAATATAACCGAGCCTTCACCAAGCAGATGTAAGAAGAGTAATTCAACGGGATCGGCGTTTAAGCGGTGGAATATCCGAGATTTGATGCGCCGGAGCAACAGT</genome_strand>
        <mrna_strand>TTATGAAATTACAACTACTC-CATGCAGGAAGAAGAATATTTTTCTCCTAGCTTTAGCAGCTACTCGTCAAATAGAGTGGCTGAGATTGCCGGAAAAATCTCCGATGAAATTAAATGTGATTCTGAGTTGATAGAAGAGAACGTTGACGGTGCTGAAGGAGATGAAGATTTTGAATTCTCTTTGGTATGTGAAAATCCAGAGGATTCGGTCGGTGTATTCCCCTTCGACCGTCAAATCCAGCCTATTTACCCCGTTTTCAACCGCGATCTGTTACTAAACGACGTTTCTTATGACGTAGATCGCGAAGGTGTTAACGGTGAATCGTCGGAAAACGTCAATAGTTCAGTTCAAGTTTCGTTAAAGGATTTATTCTTAGAAGAACGGGAACCGCTGTCGTCATCATCTTCCGAGGTCGATGAGTTGGAGAGTGTACCTCCGGGAACGTATTGTGTATGGAAGCCGAATATAGCCGAGCCTTCACCGAGCAGATGTAAGAAGAGTAATTCAACGGGATCGGCGTTTAAGCGGTGGAATATTCGAGATTTGATGCGCCGGAGCAACAGT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0236E02-u8qcS/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E356679" ref_strand="+" ref_description="SGN-E356679 [cTOS-21-E23]">
      <seq>tcagttcaagtttcgttaaaggatttattcttagaagaacgggaaccgctgtcgtcgtcatcttccgaggtcgatgagttggagagtgtacctccgggaacgtattgtgtatggaagccgaatataaccgagccttcaccaagcagatgtaagaagagtaattcaacgggatcggcgtttaagcggtggaatatccgagatttgatgcgccggagcaacagtgacggtaaggacagttttttatttctgacgccggaaaaaggattgagaaatgaaacatccaaagcaaaggactcagcggaagcgtctaaaattgccggaaaattgaaggcaaagggcaacagtagcagcggtaacaaaacatcttcgatgacggacgtttatttacggaaccaagcggcaaaggaaatggataagaataggcgcaaatcatatttaccataccggcgagatctggtaggttttttcgctagtgccagcaatattggtagaacttttcctcctttttaacaaccttccattttttaatcaagtgtttgtaaatatctaaatgaaagaacatgtgcgatgattcctgaatgatttagttgttatgctcccatttgtttaaaggatgatcatccacctcgataataattttcgatgaattttcatattatctatgaattaaatttgataaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0236E02-u8qcS/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0236E02.1" temp_strand="+" temp_description="C02HBa0236E02.1  AC215430.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0236E02 sequenced_by:kribb upload_account_name:korea">
        <position start="7071" stop="8350"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="7371" g_stop="8056" g_length="686"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="685" r_length="685" r_score="0.991"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0236E02.1" gen_strand="+" ref_id="SGN-E356679" ref_strand="+">
        <total_alignment_score>0.991</total_alignment_score>
        <cumulative_length_of_scored_exons>686</cumulative_length_of_scored_exons>
        <coverage percentage="1.001" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0236E02.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E356679" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="7371" e_stop="8056"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCAGTTCAAGTTTCGTTAAAGGATTTATTCTTAGAAGAACGGGAACCGCTGTCGTCGTCATCTTCCGAGGTCGATGAGTTGGAGAGTGTACCTCCGGGAACGTATTGTGTATGGAAGCCGAATATAACCGAGCCTTCACCAAGCAGATGTAAGAAGAGTAATTCAACGGGATCGGCGTTTAAGCGGTGGAATATCCGAGATTTGATGCGCCGGAGCAACAGTGACGGTAAGGACAGTTTTTTATTTCTGACGCCGGAAAAAGGATTGAGAAATGAAACATCCAAAGCAAAGGACTCAGCGGAAGCGTCTAAAATTGCCGGAAAATTGAAGGCAAAGGGCAACAGTAGCAGCGGTAACAAAACATCTTCGATGACGGACGTTTATTTACGGAACCAAGCGGCAAAGGAAATGGATAAGAATAGGCGCAAATCATATTTACCATACCGGCGAGATCTGGTAGGTTTTTTCGCTAGTGCCAGCAATATTGGTAGAACTTTTCCTCCTTTTTAACAACCTTCCATTTTTTAATCAAGTGTTTGTAAATATCTAAATGAAAGAACATGTGCGATGATTCCTGAATGATTTAGTTGTTATGCTCCCATTTGTTTAAAGGATGATCATCCACCTCGATAATAATTTTCGATGAATTTTTCATATTATCTATGAATTAAATTTGATAATTTTTA</genome_strand>
        <mrna_strand>TCAGTTCAAGTTTCGTTAAAGGATTTATTCTTAGAAGAACGGGAACCGCTGTCGTCGTCATCTTCCGAGGTCGATGAGTTGGAGAGTGTACCTCCGGGAACGTATTGTGTATGGAAGCCGAATATAACCGAGCCTTCACCAAGCAGATGTAAGAAGAGTAATTCAACGGGATCGGCGTTTAAGCGGTGGAATATCCGAGATTTGATGCGCCGGAGCAACAGTGACGGTAAGGACAGTTTTTTATTTCTGACGCCGGAAAAAGGATTGAGAAATGAAACATCCAAAGCAAAGGACTCAGCGGAAGCGTCTAAAATTGCCGGAAAATTGAAGGCAAAGGGCAACAGTAGCAGCGGTAACAAAACATCTTCGATGACGGACGTTTATTTACGGAACCAAGCGGCAAAGGAAATGGATAAGAATAGGCGCAAATCATATTTACCATACCGGCGAGATCTGGTAGGTTTTTTCGCTAGTGCCAGCAATATTGGTAGAACTTTTCCTCCTTTTTAACAACCTTCCATTTTTTAATCAAGTGTTTGTAAATATCTAAATGAAAGAACATGTGCGATGATTCCTGAATGATTTAGTTGTTATGCTCCCATTTGTTTAAAGGATGATCATCCACCTCGATAATAATTTTCGATGAA-TTTTCATATTATCTATGAATTAAATTTGATAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0236E02-u8qcS/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E355115" ref_strand="+" ref_description="SGN-E355115 [cTOS-18-B16]">
      <seq>tcagttcaagtttcgttaaaggatttattcttagaagaacgggaaccgctgtcgtcgtcatcttccgaggtcgatgagttggagagtgtacctccgggaacgtattgtgtatggaagccgaatataaccgagccttcaccaagcagatgtaagaagagtaattcaacgggatcggcgtttaagcggtggaatatccgagatttgatgcgccggagcaacagtgacggtaaggacagttttttatttctgacgccggaaaaaggattgagaaatgaaacatccaaagcaaaggactcagcggaagcgtctaaaattgccggaaaattgaaggcaaagggcaacagtagcagcggtaacaaaacatcttcgatgacggacgtttatttacggaaccaagcggcaaaggaaatggataagaataggcgcaaatcatatttaccataccggcgagatctggtaggttttttcgctagtgccagcaatattggtagaacttttcctcctttttaacaaccttccattttttaatcaagtgtttgtaaatatctaaatgaaagaacatgtgcgatgattcctgaatgatttagttgttatgctcccatttgtttaaaggatgatcatccacctcgataataattttcgatgaatttttcatattatctatgaattaaatttgataaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0236E02-u8qcS/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0236E02.1" temp_strand="+" temp_description="C02HBa0236E02.1  AC215430.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0236E02 sequenced_by:kribb upload_account_name:korea">
        <position start="7071" stop="8350"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="7371" g_stop="8051" g_length="681"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="681" r_length="681" r_score="0.999"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0236E02.1" gen_strand="+" ref_id="SGN-E355115" ref_strand="+">
        <total_alignment_score>0.999</total_alignment_score>
        <cumulative_length_of_scored_exons>681</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0236E02.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E355115" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="7371" e_stop="8051"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCAGTTCAAGTTTCGTTAAAGGATTTATTCTTAGAAGAACGGGAACCGCTGTCGTCGTCATCTTCCGAGGTCGATGAGTTGGAGAGTGTACCTCCGGGAACGTATTGTGTATGGAAGCCGAATATAACCGAGCCTTCACCAAGCAGATGTAAGAAGAGTAATTCAACGGGATCGGCGTTTAAGCGGTGGAATATCCGAGATTTGATGCGCCGGAGCAACAGTGACGGTAAGGACAGTTTTTTATTTCTGACGCCGGAAAAAGGATTGAGAAATGAAACATCCAAAGCAAAGGACTCAGCGGAAGCGTCTAAAATTGCCGGAAAATTGAAGGCAAAGGGCAACAGTAGCAGCGGTAACAAAACATCTTCGATGACGGACGTTTATTTACGGAACCAAGCGGCAAAGGAAATGGATAAGAATAGGCGCAAATCATATTTACCATACCGGCGAGATCTGGTAGGTTTTTTCGCTAGTGCCAGCAATATTGGTAGAACTTTTCCTCCTTTTTAACAACCTTCCATTTTTTAATCAAGTGTTTGTAAATATCTAAATGAAAGAACATGTGCGATGATTCCTGAATGATTTAGTTGTTATGCTCCCATTTGTTTAAAGGATGATCATCCACCTCGATAATAATTTTCGATGAATTTTTCATATTATCTATGAATTAAATTTGATAAT</genome_strand>
        <mrna_strand>TCAGTTCAAGTTTCGTTAAAGGATTTATTCTTAGAAGAACGGGAACCGCTGTCGTCGTCATCTTCCGAGGTCGATGAGTTGGAGAGTGTACCTCCGGGAACGTATTGTGTATGGAAGCCGAATATAACCGAGCCTTCACCAAGCAGATGTAAGAAGAGTAATTCAACGGGATCGGCGTTTAAGCGGTGGAATATCCGAGATTTGATGCGCCGGAGCAACAGTGACGGTAAGGACAGTTTTTTATTTCTGACGCCGGAAAAAGGATTGAGAAATGAAACATCCAAAGCAAAGGACTCAGCGGAAGCGTCTAAAATTGCCGGAAAATTGAAGGCAAAGGGCAACAGTAGCAGCGGTAACAAAACATCTTCGATGACGGACGTTTATTTACGGAACCAAGCGGCAAAGGAAATGGATAAGAATAGGCGCAAATCATATTTACCATACCGGCGAGATCTGGTAGGTTTTTTCGCTAGTGCCAGCAATATTGGTAGAACTTTTCCTCCTTTTTAACAACCTTCCATTTTTTAATCAAGTGTTTGTAAATATCTAAATGAAAGAACATGTGCGATGATTCCTGAATGATTTAGTTGTTATGCTCCCATTTGTTTAAAGGATGATCATCCACCTCGATAATAATTTTCGATGAATTTTTCATATTATCTATGAATTAAATTTGATAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0236E02-u8qcS/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E354769" ref_strand="+" ref_description="SGN-E354769 [cTOS-19-I7]">
      <seq>agatgtaagaagagtaattcaacgggatcggcgtttaagcggtggaatatccgagatttgatgcgccggagcaacagtgacggtaaggacagttttttatttctgacgccggaaaaaggattgagaaatgaaacatccaaagcaaaggactcagcggaagcgtctaaaattgccggaaaattgaaggcaaagggcaacagtagcagcggtaacaaaacatcttcgatgacggacgtttatttacggaaccaagcggcaaaggaaatggataagaataggcgcaaatcatatttaccataccggcgagatctggtagggtttttcgctagtgccagcaatattggtagaacttttcctcctttttaacaaccttccattttttaatcaagtgtttgtaaatatctaaatgaaagaacatgtgcgatgattcctgaatgatttagttgttatgctcccatttgtttaaaggatgatcatccacctcgataataaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0236E02-u8qcS/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0236E02.1" temp_strand="+" temp_description="C02HBa0236E02.1  AC215430.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0236E02 sequenced_by:kribb upload_account_name:korea">
        <position start="7215" stop="8306"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="7515" g_stop="8016" g_length="502"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="502" r_length="502" r_score="0.982"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0236E02.1" gen_strand="+" ref_id="SGN-E354769" ref_strand="+">
        <total_alignment_score>0.982</total_alignment_score>
        <cumulative_length_of_scored_exons>502</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0236E02.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E354769" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="7515" e_stop="8016"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGATGTAAGAAGAGTAATTCAACGGGATCGGCGTTTAAGCGGTGGAATATCCGAGATTTGATGCGCCGGAGCAACAGTGACGGTAAGGACAGTTTTTTATTTCTGACGCCGGAAAAAGGATTGAGAAATGAAACATCCAAAGCAAAGGACTCAGCGGAAGCGTCTAAAATTGCCGGAAAATTGAAGGCAAAGGGCAACAGTAGCAGCGGTAACAAAACATCTTCGATGACGGACGTTTATTTACGGAACCAAGCGGCAAAGGAAATGGATAAGAATAGGCGCAAATCATATTTACCATACCGGCGAGATCTGGTAGGTTTTTTCGCTAGTGCCAGCAATATTGGTAGAACTTTTCCTCCTTTTTAACAACCTTCCATTTTTTAATCAAGTGTTTGTAAATATCTAAATGAAAGAACATGTGCGATGATTCCTGAATGATTTAGTTGTTATGCTCCCATTTGTTTAAAGGATGATCATCCACCTCGATAATAATTTTCGATGA</genome_strand>
        <mrna_strand>AGATGTAAGAAGAGTAATTCAACGGGATCGGCGTTTAAGCGGTGGAATATCCGAGATTTGATGCGCCGGAGCAACAGTGACGGTAAGGACAGTTTTTTATTTCTGACGCCGGAAAAAGGATTGAGAAATGAAACATCCAAAGCAAAGGACTCAGCGGAAGCGTCTAAAATTGCCGGAAAATTGAAGGCAAAGGGCAACAGTAGCAGCGGTAACAAAACATCTTCGATGACGGACGTTTATTTACGGAACCAAGCGGCAAAGGAAATGGATAAGAATAGGCGCAAATCATATTTACCATACCGGCGAGATCTGGTAGGGTTTTTCGCTAGTGCCAGCAATATTGGTAGAACTTTTCCTCCTTTTTAACAACCTTCCATTTTTTAATCAAGTGTTTGTAAATATCTAAATGAAAGAACATGTGCGATGATTCCTGAATGATTTAGTTGTTATGCTCCCATTTGTTTAAAGGATGATCATCCACCTCGATAATAAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0236E02-u8qcS/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E747061" ref_strand="+" ref_description="SGN-E747061 [GI|56562176]">
      <seq>ttgaaatgtaaggttcttggcttcttagccatatgatattaaggcaaaagtaagatacaacattgaatctccaacgtacaaacctcatctacaatggattgaagctctcatttgcttagccatcactttcaacattgtctattggattggttatatgtaagagttcaaaagcagcaataatcaagaacacatcactagctatactattactagttagtaacaaagtagtataaagggcaagcaaaagctaaaggaagctcattgagaaatgtcaactgcttccattaacaattgccttactctctcccctgctcaagcttcccttaagaaacctactcgtcccgttgccttcgcaaggcttggcaactcttcttcttcttcttctattccaagtctcatcagaaacgagcccgtctttgctgcccctactcccatcatcaaccccattgtgagagaagaaatggcaaaagaatcctacgatcaagccattgctgcactcgagaaactcctcagcgagaaagcagaacttggaccagttgctgcagcaagagttgaccagatcactgctgaattgaaatcagcagacggcggcaaggcattcgaccctgttgagcacatgaaagctggctttattcatttcaagactgagaaatatgacacaaacccagccttatatggtgagctagcaaagggccagagccctaagttcatggttttcgcgtgctctgactcacgagtctgcccatcccatgtcctcaacttccaacctggtgaggcattcatggttcgtaacatcgccaacatggtccctgcttatgacaaggtcaggtactctggagtaggagcagccattgaatacgccgttcttcatcttaaggtggagaacatcgttgtcattggccacagtgcttgtggaggtatcaaaggtctcatgtcactacctgaagatggtagtgaatcaactgcctttattgaggattgggtaaaaatttgtttacctgccaaggcaaaggttctggccgatcacggagggaaagaatttgcacatcaatgcacagcttgtgagaaggaagctgtgaacgtttcacttggaaatctgcttacgtatccattcgtgagagaaggattggtgaagaaaacattggcattgaagggaggttactatgatttcgtgaagggtggatttgagctgtggggacttgagttcggtctttctcctcctctttccgtatgaacttaattcaattaccatttggccctcacaatttccttccttttttttttttttcgcctgacagtacttttgcttcgcaaaatcaactgtgtgtatgttgtttgtatgtattatgtatgtatgaatcaaatatggaagagcactcgttgttatatttctgaaataaataaaatggagactactttttgtat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0236E02-u8qcS/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0236E02.1" temp_strand="+" temp_description="C02HBa0236E02.1  AC215430.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0236E02 sequenced_by:kribb upload_account_name:korea">
        <position start="14432" stop="18448"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="14732" g_stop="15182" g_length="451"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="451" r_length="451" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="15183" i_stop="16379" i_length="1197">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.971" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="16380" g_stop="16441" g_length="62"/>
          <reference_exon_boundary r_type="cDNA" r_start="452" r_stop="513" r_length="62" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="16442" i_stop="16813" i_length="372">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="16814" g_stop="16957" g_length="144"/>
          <reference_exon_boundary r_type="cDNA" r_start="514" r_stop="657" r_length="144" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="16958" i_stop="17055" i_length="98">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="17056" g_stop="17104" g_length="49"/>
          <reference_exon_boundary r_type="cDNA" r_start="658" r_stop="706" r_length="49" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="17105" i_stop="17188" i_length="84">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.961" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="17189" g_stop="17305" g_length="117"/>
          <reference_exon_boundary r_type="cDNA" r_start="707" r_stop="823" r_length="117" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="17306" i_stop="17390" i_length="85">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.979" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="17391" g_stop="17530" g_length="140"/>
          <reference_exon_boundary r_type="cDNA" r_start="824" r_stop="963" r_length="140" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="17531" i_stop="17607" i_length="77">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.948" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="17608" g_stop="17713" g_length="106"/>
          <reference_exon_boundary r_type="cDNA" r_start="964" r_stop="1069" r_length="106" r_score="1.000"/>
        </exon>
        <intron i_serial="7">
          <gDNA_intron_boundary i_start="17714" i_stop="17793" i_length="80">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="8">
          <gDNA_exon_boundary g_start="17794" g_stop="18148" g_length="355"/>
          <reference_exon_boundary r_type="cDNA" r_start="1070" r_stop="1425" r_length="356" r_score="0.994"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0236E02.1" gen_strand="+" ref_id="SGN-E747061" ref_strand="+">
        <total_alignment_score>0.999</total_alignment_score>
        <cumulative_length_of_scored_exons>1424</cumulative_length_of_scored_exons>
        <coverage percentage="0.999" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0236E02.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E747061" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="14732" e_stop="15182"/>
          <exon e_start="16380" e_stop="16441"/>
          <exon e_start="16814" e_stop="16957"/>
          <exon e_start="17056" e_stop="17104"/>
          <exon e_start="17189" e_stop="17305"/>
          <exon e_start="17391" e_stop="17530"/>
          <exon e_start="17608" e_stop="17713"/>
          <exon e_start="17794" e_stop="18148"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTGAAATGTAAGGTTCTTGGCTTCTTAGCCATATGATATTAAGGCAAAAGTAAGATACAACATTGAATCTCCAACGTACAAACCTCATCTACAATGGATTGAAGCTCTCATTTGCTTAGCCATCACTTTCAACATTGTCTATTGGATTGGTTATATGTAAGAGTTCAAAAGCAGCAATAATCAAGAACACATCACTAGCTATACTATTACTAGTTAGTAACAAAGTAGTATAAAGGGCAAGCAAAAGCTAAAGGAAGCTCATTGAGAAATGTCAACTGCTTCCATTAACAATTGCCTTACTCTCTCCCCTGCTCAAGCTTCCCTTAAGAAACCTACTCGTCCCGTTGCCTTCGCAAGGCTTGGCAACTCTTCTTCTTCTTCTTCTATTCCAAGTCTCATCAGAAACGAGCCCGTCTTTGCTGCCCCTACTCCCATCATCAACCCCATTGTGGTACGAATTTTTAACTTACATCACTGTATTTTAATCTGTTATAACAAGTTATTTATATTTGACGTTACTTAATTTATTTTTTAAGCAAGACATTTTTTTTGTCTTATCGTATTTTTTGTAACGACTTGTGTCCATGCATGCTAGTTCACGTGAAAATTCAATATTGGCATAGTTCTAAACTTTAGTTTCTAACCACCTTTATTATTGGTATTGTTATTTTTGGCCATGAATCTCCTGAAGTTAGGTGAATTGATCATGTCGCTCTAAATTGTACACGTCTATTGCGTGTACTCAATGACATATAATATATTATTGCAATCCTAAAATAAGTGTTATTTTAATTTATTTTGAACTCATTAAAATAAATATGATATTTTACTGAGTTACTTATATTTATTACTTTGATTTTTTTGAGTACTAATTTGTATTTTGAAACTTTTAAGATGACGAGAGGGTGGAAATAACAAATTAAATTTGAAAATGAACCAAAATAGAGGTGGCAATTAGGTAGAGGTTCTCGCAAAATGAATATTAAATATGTAGGGCCGTATTGTGAATTATGTGGATAATGTTTTTGCTTTCTATTTTTTTTTAAAAAAAATAATTATTACTTACAATAATCCAACGGGTATCCTCGTATGTGCCCATCCTACAAGTGATAAAATGATAAGTACCAGTCTACCATCAAGTTTGTAGGATAGAAACTATTTAGTATACATTGTTTTTGTCTTAATTTCTAGTTTTGGTATCCATCTAAATCGATACTCCATTATGTTAATTATTTCATTTCTTTCTTTTGACATCTACATCACTTTTTAATGTGGTTACCACTTGCTATAATCATACTTCACTTAGCATTTTATTTGAACTTAGTGAAAGTGAAATTTTTCCTAATAATTGGTCTAAAAATTGAAGAAGATTAAAGCCAAGAAATTGAGTTCTTCCTTCTTTCTTCCAACTTTGAAAGTACCGATAGATACTATCATATAAAAAGAAGAGGTGGTCTGACTAACTCAATGAAGTGAATTTTTCAAAAACATGCTCAGAAAAATGAGAAAAATGGAGTTTTTGAAAAGAAAAATTAACAGATATTTAAAGATAAATTTTTGAAATTTGGTTCAAAATTTATGGTCAAATATTAACTTATATTTATATATATACCTCTTCTAAAATGCTAATGAGAATTAGAATTTGCAGAGAGAAGAAATGGCAAAAGAATCCTACGATCAAGCCATTGCTGCACTCGAGAAACTCCTCAGGTTTGTACTCTCTCTACGACTCTACCTTCTAAATCACACTACTTTTTTCTCGATCAAGTGGGGCCCAAAAAATATACATACACCCACACATACGTAGACAAAAAAAATGTTAAAATTTGCGAATATGCAGAGAAAACATAATATAATCATGCAATGTTTACTCGTAAAATTCAATTTCCCGGCAATGAACATGTTACTTGGTTTCGAGTTCTCCAGATCTGCATTAATTTTACCATTCTATCATCATTTTTTTACCCCATATCTGCATTAATTTATCATGGTAATGGTGCTCAAACCACAAATCTTTTTTTTTTCTACCTGAAATATTGCTTCAATAATAATAATGGTCTAAATTATTTTCTGCAATTACAGCGAGAAAGCAGAACTTGGACCAGTTGCTGCAGCAAGAGTTGACCAGATCACTGCTGAATTGAAATCAGCAGACGGCGGCAAGGCATTCGACCCTGTTGAGCACATGAAAGCTGGCTTTATTCATTTCAAGACTGAGAAATATGAGTAAGCAAATTCATTCAAATTAAAATTTCTGCATATTTGATGTTGTAACATTATTAGTGTCTGATAATTTTTCCTGTTTTCTATTTATGTACCAACAGCACAAACCCAGCCTTATATGGTGAGCTAGCAAAGGGCCAGAGCCCTAAGGTACAAATTCCTTGTTAATTTGTTGTCTAATTTTATGATTTGTACGGTTTCTGATGAGTTCTATTGTCCTAAATGTGTAAACAGTTCATGGTTTTCGCGTGCTCTGACTCACGAGTCTGCCCATCCCATGTCCTCAACTTCCAACCTGGTGAGGCATTCATGGTTCGTAACATCGCCAACATGGTCCCTGCTTATGACAAGGTCAGTTACAAATCGATCAACTAGTCGATTATTTCGCTCTGGAATTGTGTTTTTTAAAAATAAAGATGGAATTGAATTTTTACAGGTCAGGTACTCTGGAGTAGGAGCAGCCATTGAATACGCCGTTCTTCATCTTAAGGTGGAGAACATCGTTGTCATTGGCCACAGTGCTTGTGGAGGTATCAAAGGTCTCATGTCACTACCTGAAGATGGTAGTGAATCAACGTACGTCACTCTATAAATCTATTCATTCAAAACACTTATCCTTAACAGATGATTGATTAATAATCTAATATACGCAGTGCCTTTATTGAGGATTGGGTAAAAATTTGTTTACCTGCCAAGGCAAAGGTTCTGGCCGATCACGGAGGGAAAGAATTTGCACATCAATGCACAGCTTGTGAGAAGGTAAAATTCAAATTTAACTTTTTGATTATCAATTAATTACATATATAGCAGTATTTTATAATTGATGAAAAATGTTGCAGGAAGCTGTGAACGTTTCACTTGGAAATCTGCTTACGTATCCATTCGTGAGAGAAGGATTGGTGAAGAAAACATTGGCATTGAAGGGAGGTTACTATGATTTCGTGAAGGGTGGATTTGAGCTGTGGGGACTTGAGTTCGGTCTTTCTCCTCCTCTTTCCGTATGAACTTAATTCAATTACCATTTGGCCCTCACAATTTCCTTCC-TTTTTTTTTTTTTCGCCTGACAGTACTTTTGCTTCGCAAAATCAACTGTGTGTATGTTGTTTGTATGTATTATGTATGTATGAATCAAATATGGAAGAGCACTCGTTGTTATATTTCTGAAATAAATAAAATGGAGACTACTTTTTGTAT</genome_strand>
        <mrna_strand>TTGAAATGTAAGGTTCTTGGCTTCTTAGCCATATGATATTAAGGCAAAAGTAAGATACAACATTGAATCTCCAACGTACAAACCTCATCTACAATGGATTGAAGCTCTCATTTGCTTAGCCATCACTTTCAACATTGTCTATTGGATTGGTTATATGTAAGAGTTCAAAAGCAGCAATAATCAAGAACACATCACTAGCTATACTATTACTAGTTAGTAACAAAGTAGTATAAAGGGCAAGCAAAAGCTAAAGGAAGCTCATTGAGAAATGTCAACTGCTTCCATTAACAATTGCCTTACTCTCTCCCCTGCTCAAGCTTCCCTTAAGAAACCTACTCGTCCCGTTGCCTTCGCAAGGCTTGGCAACTCTTCTTCTTCTTCTTCTATTCCAAGTCTCATCAGAAACGAGCCCGTCTTTGCTGCCCCTACTCCCATCATCAACCCCATTGTG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGAGAAGAAATGGCAAAAGAATCCTACGATCAAGCCATTGCTGCACTCGAGAAACTCCTCAG....................................................................................................................................................................................................................................................................................................................................................................................CGAGAAAGCAGAACTTGGACCAGTTGCTGCAGCAAGAGTTGACCAGATCACTGCTGAATTGAAATCAGCAGACGGCGGCAAGGCATTCGACCCTGTTGAGCACATGAAAGCTGGCTTTATTCATTTCAAGACTGAGAAATATGA..................................................................................................CACAAACCCAGCCTTATATGGTGAGCTAGCAAAGGGCCAGAGCCCTAAG....................................................................................TTCATGGTTTTCGCGTGCTCTGACTCACGAGTCTGCCCATCCCATGTCCTCAACTTCCAACCTGGTGAGGCATTCATGGTTCGTAACATCGCCAACATGGTCCCTGCTTATGACAAG.....................................................................................GTCAGGTACTCTGGAGTAGGAGCAGCCATTGAATACGCCGTTCTTCATCTTAAGGTGGAGAACATCGTTGTCATTGGCCACAGTGCTTGTGGAGGTATCAAAGGTCTCATGTCACTACCTGAAGATGGTAGTGAATCAAC.............................................................................TGCCTTTATTGAGGATTGGGTAAAAATTTGTTTACCTGCCAAGGCAAAGGTTCTGGCCGATCACGGAGGGAAAGAATTTGCACATCAATGCACAGCTTGTGAGAAG................................................................................GAAGCTGTGAACGTTTCACTTGGAAATCTGCTTACGTATCCATTCGTGAGAGAAGGATTGGTGAAGAAAACATTGGCATTGAAGGGAGGTTACTATGATTTCGTGAAGGGTGGATTTGAGCTGTGGGGACTTGAGTTCGGTCTTTCTCCTCCTCTTTCCGTATGAACTTAATTCAATTACCATTTGGCCCTCACAATTTCCTTCCTTTTTTTTTTTTTTCGCCTGACAGTACTTTTGCTTCGCAAAATCAACTGTGTGTATGTTGTTTGTATGTATTATGTATGTATGAATCAAATATGGAAGAGCACTCGTTGTTATATTTCTGAAATAAATAAAATGGAGACTACTTTTTGTAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0236E02-u8qcS/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E390600" ref_strand="+" ref_description="SGN-E390600 [TUS-47-C6]">
      <seq>ttgaaatgtaaggttcttggcttcttagccatatgatattaaggcaaaagtaagatacaacattgaatctccaacgtacaaacctcatctacaatggattgaagctctcatttgcttagccatcactttcaacattgtctattggattggttatatgtaagagttcaaaagcagcaataatcaagaacacatcactagctatactattactagttagtaacaaagtagtataaagggcaagcaaaagctaaaggaagctcattgagaaatgtcaactgcttccattaacaattgccttactctctcccctgctcaagcttcccttaagaaacctactcgtcccgttgccttcgcaaggcttggcaactcttcttcttcttcttctattccaagtctcatcagaaacgagcccgtctttgctgcccctactcccatcatcacccccatt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0236E02-u8qcS/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0236E02.1" temp_strand="+" temp_description="C02HBa0236E02.1  AC215430.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0236E02 sequenced_by:kribb upload_account_name:korea">
        <position start="14432" stop="15479"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="14732" g_stop="15179" g_length="448"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="448" r_length="448" r_score="0.998"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0236E02.1" gen_strand="+" ref_id="SGN-E390600" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>448</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0236E02.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E390600" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="14732" e_stop="15179"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTGAAATGTAAGGTTCTTGGCTTCTTAGCCATATGATATTAAGGCAAAAGTAAGATACAACATTGAATCTCCAACGTACAAACCTCATCTACAATGGATTGAAGCTCTCATTTGCTTAGCCATCACTTTCAACATTGTCTATTGGATTGGTTATATGTAAGAGTTCAAAAGCAGCAATAATCAAGAACACATCACTAGCTATACTATTACTAGTTAGTAACAAAGTAGTATAAAGGGCAAGCAAAAGCTAAAGGAAGCTCATTGAGAAATGTCAACTGCTTCCATTAACAATTGCCTTACTCTCTCCCCTGCTCAAGCTTCCCTTAAGAAACCTACTCGTCCCGTTGCCTTCGCAAGGCTTGGCAACTCTTCTTCTTCTTCTTCTATTCCAAGTCTCATCAGAAACGAGCCCGTCTTTGCTGCCCCTACTCCCATCATCAACCCCATT</genome_strand>
        <mrna_strand>TTGAAATGTAAGGTTCTTGGCTTCTTAGCCATATGATATTAAGGCAAAAGTAAGATACAACATTGAATCTCCAACGTACAAACCTCATCTACAATGGATTGAAGCTCTCATTTGCTTAGCCATCACTTTCAACATTGTCTATTGGATTGGTTATATGTAAGAGTTCAAAAGCAGCAATAATCAAGAACACATCACTAGCTATACTATTACTAGTTAGTAACAAAGTAGTATAAAGGGCAAGCAAAAGCTAAAGGAAGCTCATTGAGAAATGTCAACTGCTTCCATTAACAATTGCCTTACTCTCTCCCCTGCTCAAGCTTCCCTTAAGAAACCTACTCGTCCCGTTGCCTTCGCAAGGCTTGGCAACTCTTCTTCTTCTTCTTCTATTCCAAGTCTCATCAGAAACGAGCCCGTCTTTGCTGCCCCTACTCCCATCATCACCCCCATT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0236E02-u8qcS/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E334497" ref_strand="+" ref_description="SGN-E334497 [cTOD-23-F11]">
      <seq>tgaaatgtaaggttcttggcttcttagccatatgatattaaggcaaaagtaagatacaacattgaatctccaacgtacaaacctcatctacaatggattgaagctctcatttgcttagccatcactttcaacattgtctattggattggttatatgtaagagttcaaaagcagcaataatcaagaacacatcactagctatactattactagttagtaacaaagtagtataaagggcaagcaaaagctaaaggaagctcattgagaaatgtcaactgcttccattaacaattgccttactctctcccctgctcaagcttcccttaagaaacctactcgtcccgttgccttcgcaaggcttggcaactcttcttcttcttcttctattccaagtctcatcagaaacgagcccgtctttgctgcccctactcccatcatcaaccccattgtgagagaagaaatggcaaaagaatcctacgatcaagccattgctgcactcgagaaactcctcagcgagaaagcagaacttggaccagttgctgcagcaagagttgaccagatcactgctgaattgaaatcagcagacggcggcaaggcattcgaccctgttgagcacatgaaagctggctttattcatttcaagactgagaaatatgacacaaacccagccttatatggtgagctagcaaagggccagagccctaagttc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0236E02-u8qcS/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0236E02.1" temp_strand="+" temp_description="C02HBa0236E02.1  AC215430.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0236E02 sequenced_by:kribb upload_account_name:korea">
        <position start="14433" stop="17406"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="14733" g_stop="15182" g_length="450"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="450" r_length="450" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="15183" i_stop="16379" i_length="1197">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.971" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="16380" g_stop="16441" g_length="62"/>
          <reference_exon_boundary r_type="cDNA" r_start="451" r_stop="512" r_length="62" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="16442" i_stop="16813" i_length="372">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="16814" g_stop="16957" g_length="144"/>
          <reference_exon_boundary r_type="cDNA" r_start="513" r_stop="656" r_length="144" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="16958" i_stop="17055" i_length="98">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="17056" g_stop="17104" g_length="49"/>
          <reference_exon_boundary r_type="cDNA" r_start="657" r_stop="705" r_length="49" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0236E02.1" gen_strand="+" ref_id="SGN-E334497" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>705</cumulative_length_of_scored_exons>
        <coverage percentage="0.996" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0236E02.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E334497" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="14733" e_stop="15182"/>
          <exon e_start="16380" e_stop="16441"/>
          <exon e_start="16814" e_stop="16957"/>
          <exon e_start="17056" e_stop="17104"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGAAATGTAAGGTTCTTGGCTTCTTAGCCATATGATATTAAGGCAAAAGTAAGATACAACATTGAATCTCCAACGTACAAACCTCATCTACAATGGATTGAAGCTCTCATTTGCTTAGCCATCACTTTCAACATTGTCTATTGGATTGGTTATATGTAAGAGTTCAAAAGCAGCAATAATCAAGAACACATCACTAGCTATACTATTACTAGTTAGTAACAAAGTAGTATAAAGGGCAAGCAAAAGCTAAAGGAAGCTCATTGAGAAATGTCAACTGCTTCCATTAACAATTGCCTTACTCTCTCCCCTGCTCAAGCTTCCCTTAAGAAACCTACTCGTCCCGTTGCCTTCGCAAGGCTTGGCAACTCTTCTTCTTCTTCTTCTATTCCAAGTCTCATCAGAAACGAGCCCGTCTTTGCTGCCCCTACTCCCATCATCAACCCCATTGTGGTACGAATTTTTAACTTACATCACTGTATTTTAATCTGTTATAACAAGTTATTTATATTTGACGTTACTTAATTTATTTTTTAAGCAAGACATTTTTTTTGTCTTATCGTATTTTTTGTAACGACTTGTGTCCATGCATGCTAGTTCACGTGAAAATTCAATATTGGCATAGTTCTAAACTTTAGTTTCTAACCACCTTTATTATTGGTATTGTTATTTTTGGCCATGAATCTCCTGAAGTTAGGTGAATTGATCATGTCGCTCTAAATTGTACACGTCTATTGCGTGTACTCAATGACATATAATATATTATTGCAATCCTAAAATAAGTGTTATTTTAATTTATTTTGAACTCATTAAAATAAATATGATATTTTACTGAGTTACTTATATTTATTACTTTGATTTTTTTGAGTACTAATTTGTATTTTGAAACTTTTAAGATGACGAGAGGGTGGAAATAACAAATTAAATTTGAAAATGAACCAAAATAGAGGTGGCAATTAGGTAGAGGTTCTCGCAAAATGAATATTAAATATGTAGGGCCGTATTGTGAATTATGTGGATAATGTTTTTGCTTTCTATTTTTTTTTAAAAAAAATAATTATTACTTACAATAATCCAACGGGTATCCTCGTATGTGCCCATCCTACAAGTGATAAAATGATAAGTACCAGTCTACCATCAAGTTTGTAGGATAGAAACTATTTAGTATACATTGTTTTTGTCTTAATTTCTAGTTTTGGTATCCATCTAAATCGATACTCCATTATGTTAATTATTTCATTTCTTTCTTTTGACATCTACATCACTTTTTAATGTGGTTACCACTTGCTATAATCATACTTCACTTAGCATTTTATTTGAACTTAGTGAAAGTGAAATTTTTCCTAATAATTGGTCTAAAAATTGAAGAAGATTAAAGCCAAGAAATTGAGTTCTTCCTTCTTTCTTCCAACTTTGAAAGTACCGATAGATACTATCATATAAAAAGAAGAGGTGGTCTGACTAACTCAATGAAGTGAATTTTTCAAAAACATGCTCAGAAAAATGAGAAAAATGGAGTTTTTGAAAAGAAAAATTAACAGATATTTAAAGATAAATTTTTGAAATTTGGTTCAAAATTTATGGTCAAATATTAACTTATATTTATATATATACCTCTTCTAAAATGCTAATGAGAATTAGAATTTGCAGAGAGAAGAAATGGCAAAAGAATCCTACGATCAAGCCATTGCTGCACTCGAGAAACTCCTCAGGTTTGTACTCTCTCTACGACTCTACCTTCTAAATCACACTACTTTTTTCTCGATCAAGTGGGGCCCAAAAAATATACATACACCCACACATACGTAGACAAAAAAAATGTTAAAATTTGCGAATATGCAGAGAAAACATAATATAATCATGCAATGTTTACTCGTAAAATTCAATTTCCCGGCAATGAACATGTTACTTGGTTTCGAGTTCTCCAGATCTGCATTAATTTTACCATTCTATCATCATTTTTTTACCCCATATCTGCATTAATTTATCATGGTAATGGTGCTCAAACCACAAATCTTTTTTTTTTCTACCTGAAATATTGCTTCAATAATAATAATGGTCTAAATTATTTTCTGCAATTACAGCGAGAAAGCAGAACTTGGACCAGTTGCTGCAGCAAGAGTTGACCAGATCACTGCTGAATTGAAATCAGCAGACGGCGGCAAGGCATTCGACCCTGTTGAGCACATGAAAGCTGGCTTTATTCATTTCAAGACTGAGAAATATGAGTAAGCAAATTCATTCAAATTAAAATTTCTGCATATTTGATGTTGTAACATTATTAGTGTCTGATAATTTTTCCTGTTTTCTATTTATGTACCAACAGCACAAACCCAGCCTTATATGGTGAGCTAGCAAAGGGCCAGAGCCCTAAG</genome_strand>
        <mrna_strand>TGAAATGTAAGGTTCTTGGCTTCTTAGCCATATGATATTAAGGCAAAAGTAAGATACAACATTGAATCTCCAACGTACAAACCTCATCTACAATGGATTGAAGCTCTCATTTGCTTAGCCATCACTTTCAACATTGTCTATTGGATTGGTTATATGTAAGAGTTCAAAAGCAGCAATAATCAAGAACACATCACTAGCTATACTATTACTAGTTAGTAACAAAGTAGTATAAAGGGCAAGCAAAAGCTAAAGGAAGCTCATTGAGAAATGTCAACTGCTTCCATTAACAATTGCCTTACTCTCTCCCCTGCTCAAGCTTCCCTTAAGAAACCTACTCGTCCCGTTGCCTTCGCAAGGCTTGGCAACTCTTCTTCTTCTTCTTCTATTCCAAGTCTCATCAGAAACGAGCCCGTCTTTGCTGCCCCTACTCCCATCATCAACCCCATTGTG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGAGAAGAAATGGCAAAAGAATCCTACGATCAAGCCATTGCTGCACTCGAGAAACTCCTCAG....................................................................................................................................................................................................................................................................................................................................................................................CGAGAAAGCAGAACTTGGACCAGTTGCTGCAGCAAGAGTTGACCAGATCACTGCTGAATTGAAATCAGCAGACGGCGGCAAGGCATTCGACCCTGTTGAGCACATGAAAGCTGGCTTTATTCATTTCAAGACTGAGAAATATGA..................................................................................................CACAAACCCAGCCTTATATGGTGAGCTAGCAAAGGGCCAGAGCCCTAAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0236E02-u8qcS/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E284193" ref_strand="+" ref_description="SGN-E284193 [cLER-16-M13]">
      <seq>tgaaatgtaaggttcttggcttcttagccatatgatattaaggcaaaagtaagatacaacattgaatctccaacgtacaaacctcatctacaatggattgaagctctcatttgcttagccatcactttcaacattgtctattggattggttatatgtaagagttcaaaagcagcaataatcaagaacacatcactagctatactattactagttagtaacaaagtagtataaagggcaagcaaaagctaaaggaagctcattgagaaatgtcaactgcttccattaacaattgccttactctctcccctgctcaagcttcccttaagaaacctactcgtcccgttgccttcgcaaggcttggcaactcttcttcttcttcttctattccaagtctcatcagaaacgagcccgtctttgctgcccctactcccatcatcaaccccattgtgagagaagaaatggcaaaaga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0236E02-u8qcS/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0236E02.1" temp_strand="+" temp_description="C02HBa0236E02.1  AC215430.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0236E02 sequenced_by:kribb upload_account_name:korea">
        <position start="14433" stop="16699"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="14733" g_stop="15182" g_length="450"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="450" r_length="450" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="15183" i_stop="16379" i_length="1197">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.971" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="16380" g_stop="16399" g_length="20"/>
          <reference_exon_boundary r_type="cDNA" r_start="451" r_stop="470" r_length="20" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0236E02.1" gen_strand="+" ref_id="SGN-E284193" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>470</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0236E02.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E284193" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="14733" e_stop="15182"/>
          <exon e_start="16380" e_stop="16399"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGAAATGTAAGGTTCTTGGCTTCTTAGCCATATGATATTAAGGCAAAAGTAAGATACAACATTGAATCTCCAACGTACAAACCTCATCTACAATGGATTGAAGCTCTCATTTGCTTAGCCATCACTTTCAACATTGTCTATTGGATTGGTTATATGTAAGAGTTCAAAAGCAGCAATAATCAAGAACACATCACTAGCTATACTATTACTAGTTAGTAACAAAGTAGTATAAAGGGCAAGCAAAAGCTAAAGGAAGCTCATTGAGAAATGTCAACTGCTTCCATTAACAATTGCCTTACTCTCTCCCCTGCTCAAGCTTCCCTTAAGAAACCTACTCGTCCCGTTGCCTTCGCAAGGCTTGGCAACTCTTCTTCTTCTTCTTCTATTCCAAGTCTCATCAGAAACGAGCCCGTCTTTGCTGCCCCTACTCCCATCATCAACCCCATTGTGGTACGAATTTTTAACTTACATCACTGTATTTTAATCTGTTATAACAAGTTATTTATATTTGACGTTACTTAATTTATTTTTTAAGCAAGACATTTTTTTTGTCTTATCGTATTTTTTGTAACGACTTGTGTCCATGCATGCTAGTTCACGTGAAAATTCAATATTGGCATAGTTCTAAACTTTAGTTTCTAACCACCTTTATTATTGGTATTGTTATTTTTGGCCATGAATCTCCTGAAGTTAGGTGAATTGATCATGTCGCTCTAAATTGTACACGTCTATTGCGTGTACTCAATGACATATAATATATTATTGCAATCCTAAAATAAGTGTTATTTTAATTTATTTTGAACTCATTAAAATAAATATGATATTTTACTGAGTTACTTATATTTATTACTTTGATTTTTTTGAGTACTAATTTGTATTTTGAAACTTTTAAGATGACGAGAGGGTGGAAATAACAAATTAAATTTGAAAATGAACCAAAATAGAGGTGGCAATTAGGTAGAGGTTCTCGCAAAATGAATATTAAATATGTAGGGCCGTATTGTGAATTATGTGGATAATGTTTTTGCTTTCTATTTTTTTTTAAAAAAAATAATTATTACTTACAATAATCCAACGGGTATCCTCGTATGTGCCCATCCTACAAGTGATAAAATGATAAGTACCAGTCTACCATCAAGTTTGTAGGATAGAAACTATTTAGTATACATTGTTTTTGTCTTAATTTCTAGTTTTGGTATCCATCTAAATCGATACTCCATTATGTTAATTATTTCATTTCTTTCTTTTGACATCTACATCACTTTTTAATGTGGTTACCACTTGCTATAATCATACTTCACTTAGCATTTTATTTGAACTTAGTGAAAGTGAAATTTTTCCTAATAATTGGTCTAAAAATTGAAGAAGATTAAAGCCAAGAAATTGAGTTCTTCCTTCTTTCTTCCAACTTTGAAAGTACCGATAGATACTATCATATAAAAAGAAGAGGTGGTCTGACTAACTCAATGAAGTGAATTTTTCAAAAACATGCTCAGAAAAATGAGAAAAATGGAGTTTTTGAAAAGAAAAATTAACAGATATTTAAAGATAAATTTTTGAAATTTGGTTCAAAATTTATGGTCAAATATTAACTTATATTTATATATATACCTCTTCTAAAATGCTAATGAGAATTAGAATTTGCAGAGAGAAGAAATGGCAAAAGA</genome_strand>
        <mrna_strand>TGAAATGTAAGGTTCTTGGCTTCTTAGCCATATGATATTAAGGCAAAAGTAAGATACAACATTGAATCTCCAACGTACAAACCTCATCTACAATGGATTGAAGCTCTCATTTGCTTAGCCATCACTTTCAACATTGTCTATTGGATTGGTTATATGTAAGAGTTCAAAAGCAGCAATAATCAAGAACACATCACTAGCTATACTATTACTAGTTAGTAACAAAGTAGTATAAAGGGCAAGCAAAAGCTAAAGGAAGCTCATTGAGAAATGTCAACTGCTTCCATTAACAATTGCCTTACTCTCTCCCCTGCTCAAGCTTCCCTTAAGAAACCTACTCGTCCCGTTGCCTTCGCAAGGCTTGGCAACTCTTCTTCTTCTTCTTCTATTCCAAGTCTCATCAGAAACGAGCCCGTCTTTGCTGCCCCTACTCCCATCATCAACCCCATTGTG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGAGAAGAAATGGCAAAAGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0236E02-u8qcS/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E476672" ref_strand="+" ref_description="SGN-E476672 [cSTB-45-J17]">
      <seq>atgattttaaggcaaaagtaagatgcaacattgaatctccaacgtacaaacctcatctacaatggattgaagctctcatttgcttagccatcactttcaacattgtctattggattggttatatgtaagagtcctcaagaagcaataatcaaggacccatccactagctataatattactagtgagtaacaaagtaatataaagggcaagcaaaagctaaaggaagctcattgagaaatgtcaactgcttccattaacaattgccttactatctcccctgctcaagcttcccttaagaaacctactcgtcccgttgccttcgcaaggcttggcaactcttcttctccttctattccaagtctcatcagaaacgagcccgtctttgctgctcctactcgcatcatcaaccccattgtgagagaagaaatggcaaaagaatcctacgatcaggccattgctgcactcgagaaactcctcagcgagaaagcagaacttggaccagttgctgcagcaagagttgaccagattactgctgaattgaaatcagcagatggaagcaaggccttcgaccctgttgagcacatg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0236E02-u8qcS/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0236E02.1" temp_strand="+" temp_description="C02HBa0236E02.1  AC215430.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0236E02 sequenced_by:kribb upload_account_name:korea">
        <position start="14464" stop="17219"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="14764" g_stop="15182" g_length="419"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="417" r_length="417" r_score="0.955"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="15183" i_stop="16379" i_length="1197">
            <donor d_prob="1.000" d_score="0.96"/>
            <acceptor a_prob="0.971" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="16380" g_stop="16441" g_length="62"/>
          <reference_exon_boundary r_type="cDNA" r_start="418" r_stop="479" r_length="62" r_score="0.984"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="16442" i_stop="16813" i_length="372">
            <donor d_prob="0.999" d_score="0.98"/>
            <acceptor a_prob="1.000" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="16814" g_stop="16919" g_length="106"/>
          <reference_exon_boundary r_type="cDNA" r_start="480" r_stop="585" r_length="106" r_score="0.953"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0236E02.1" gen_strand="+" ref_id="SGN-E476672" ref_strand="+">
        <total_alignment_score>0.957</total_alignment_score>
        <cumulative_length_of_scored_exons>587</cumulative_length_of_scored_exons>
        <coverage percentage="1.003" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0236E02.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E476672" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="14764" e_stop="15182"/>
          <exon e_start="16380" e_stop="16441"/>
          <exon e_start="16814" e_stop="16919"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATGATATTAAGGCAAAAGTAAGATACAACATTGAATCTCCAACGTACAAACCTCATCTACAATGGATTGAAGCTCTCATTTGCTTAGCCATCACTTTCAACATTGTCTATTGGATTGGTTATATGTAAGAGTTCAAAAGCAGCAATAATCAAGAACACAT-CACTAGCTATACTATTACTAGTTAGTAACAAAGTAGTATAAAGGGCAAGCAAAAGCTAAAGGAAGCTCATTGAGAAATGTCAACTGCTTCCATTAACAATTGCCTTACTCTCTCCCCTGCTCAAGCTTCCCTTAAGAAACCTACTCGTCCCGTTGCCTTCGCAAGGCTTGGCAACTCTTCTTCTTCTTCTTCTATTCCAAGTCTCATCAGAAACGAGCCCGTCTTTGCTGCCCCTACTCCCATCATCAACCCCATTGTGGTACGAATTTTTAACTTACATCACTGTATTTTAATCTGTTATAACAAGTTATTTATATTTGACGTTACTTAATTTATTTTTTAAGCAAGACATTTTTTTTGTCTTATCGTATTTTTTGTAACGACTTGTGTCCATGCATGCTAGTTCACGTGAAAATTCAATATTGGCATAGTTCTAAACTTTAGTTTCTAACCACCTTTATTATTGGTATTGTTATTTTTGGCCATGAATCTCCTGAAGTTAGGTGAATTGATCATGTCGCTCTAAATTGTACACGTCTATTGCGTGTACTCAATGACATATAATATATTATTGCAATCCTAAAATAAGTGTTATTTTAATTTATTTTGAACTCATTAAAATAAATATGATATTTTACTGAGTTACTTATATTTATTACTTTGATTTTTTTGAGTACTAATTTGTATTTTGAAACTTTTAAGATGACGAGAGGGTGGAAATAACAAATTAAATTTGAAAATGAACCAAAATAGAGGTGGCAATTAGGTAGAGGTTCTCGCAAAATGAATATTAAATATGTAGGGCCGTATTGTGAATTATGTGGATAATGTTTTTGCTTTCTATTTTTTTTTAAAAAAAATAATTATTACTTACAATAATCCAACGGGTATCCTCGTATGTGCCCATCCTACAAGTGATAAAATGATAAGTACCAGTCTACCATCAAGTTTGTAGGATAGAAACTATTTAGTATACATTGTTTTTGTCTTAATTTCTAGTTTTGGTATCCATCTAAATCGATACTCCATTATGTTAATTATTTCATTTCTTTCTTTTGACATCTACATCACTTTTTAATGTGGTTACCACTTGCTATAATCATACTTCACTTAGCATTTTATTTGAACTTAGTGAAAGTGAAATTTTTCCTAATAATTGGTCTAAAAATTGAAGAAGATTAAAGCCAAGAAATTGAGTTCTTCCTTCTTTCTTCCAACTTTGAAAGTACCGATAGATACTATCATATAAAAAGAAGAGGTGGTCTGACTAACTCAATGAAGTGAATTTTTCAAAAACATGCTCAGAAAAATGAGAAAAATGGAGTTTTTGAAAAGAAAAATTAACAGATATTTAAAGATAAATTTTTGAAATTTGGTTCAAAATTTATGGTCAAATATTAACTTATATTTATATATATACCTCTTCTAAAATGCTAATGAGAATTAGAATTTGCAGAGAGAAGAAATGGCAAAAGAATCCTACGATCAAGCCATTGCTGCACTCGAGAAACTCCTCAGGTTTGTACTCTCTCTACGACTCTACCTTCTAAATCACACTACTTTTTTCTCGATCAAGTGGGGCCCAAAAAATATACATACACCCACACATACGTAGACAAAAAAAATGTTAAAATTTGCGAATATGCAGAGAAAACATAATATAATCATGCAATGTTTACTCGTAAAATTCAATTTCCCGGCAATGAACATGTTACTTGGTTTCGAGTTCTCCAGATCTGCATTAATTTTACCATTCTATCATCATTTTTTTACCCCATATCTGCATTAATTTATCATGGTAATGGTGCTCAAACCACAAATCTTTTTTTTTTCTACCTGAAATATTGCTTCAATAATAATAATGGTCTAAATTATTTTCTGCAATTACAGCGAGAAAGCAGAACTTGGACCAGTTGCTGCAGCAAGAGTTGACCAGATCACTGCTGAATTGAAATCAGCAGACGGCGGCAAGGCATTCGACCCTGTTGAGCACATG</genome_strand>
        <mrna_strand>ATGATTTTAAGGCAAAAGTAAGATGCAACATTGAATCTCCAACGTACAAACCTCATCTACAATGGATTGAAGCTCTCATTTGCTTAGCCATCACTTTCAACATTGTCTATTGGATTGGTTATATGTAAGAGTCCTCAAGAAGCAATAATCAAGGACCCATCCACTAGCTATAATATTACTAGTGAGTAACAAAGTAATATAAAGGGCAAGCAAAAGCTAAAGGAAGCTCATTGAGAAATGTCAACTGCTTCCATTAACAATTGCCTTACTATCTCCCCTGCTCAAGCTTCCCTTAAGAAACCTACTCGTCCCGTTGCCTTCGCAAGGCTTGGCAACTCTTCTTC-TC--CTTCTATTCCAAGTCTCATCAGAAACGAGCCCGTCTTTGCTGCTCCTACTCGCATCATCAACCCCATTGTG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGAGAAGAAATGGCAAAAGAATCCTACGATCAGGCCATTGCTGCACTCGAGAAACTCCTCAG....................................................................................................................................................................................................................................................................................................................................................................................CGAGAAAGCAGAACTTGGACCAGTTGCTGCAGCAAGAGTTGACCAGATTACTGCTGAATTGAAATCAGCAGATGGAAGCAAGGCCTTCGACCCTGTTGAGCACATG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0236E02-u8qcS/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E404588" ref_strand="+" ref_description="SGN-E404588 [PPC-14-F5]">
      <seq>agttttaaagcaaaagtaagatgcaacattgaatctccaacgtacaaacctcatctacaatggattgaagctctcatttgcttagccatcactttcaacattgtctattggattggttatatgtaagagtcctcaagaagcaataatcaaggacccatccactagctataatattactagtgagtaacaaagtaatataaagggcaagcaaaagctaaaggaagctcattgagaaatgtcaactgcttccattaacaattgccttactatctcccctgctcaagcttcccttaagaaacctactcgtcccgttgccttcgcaaggcttggcaactcttcttctccttctattccaagtctcatcagaaacgagcccgtctttgctgctcctactcgcatcatcaaccccattgtgagagaagaaatggcaaaagaatcctacga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0236E02-u8qcS/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0236E02.1" temp_strand="+" temp_description="C02HBa0236E02.1  AC215430.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0236E02 sequenced_by:kribb upload_account_name:korea">
        <position start="14466" stop="16708"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="14766" g_stop="15182" g_length="417"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="415" r_length="415" r_score="0.947"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="15183" i_stop="16379" i_length="1197">
            <donor d_prob="1.000" d_score="0.96"/>
            <acceptor a_prob="0.971" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="16380" g_stop="16408" g_length="29"/>
          <reference_exon_boundary r_type="cDNA" r_start="416" r_stop="444" r_length="29" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0236E02.1" gen_strand="+" ref_id="SGN-E404588" ref_strand="+">
        <total_alignment_score>0.947</total_alignment_score>
        <cumulative_length_of_scored_exons>446</cumulative_length_of_scored_exons>
        <coverage percentage="1.005" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0236E02.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E404588" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="14766" e_stop="15182"/>
          <exon e_start="16380" e_stop="16408"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GATATTAAGGCAAAAGTAAGATACAACATTGAATCTCCAACGTACAAACCTCATCTACAATGGATTGAAGCTCTCATTTGCTTAGCCATCACTTTCAACATTGTCTATTGGATTGGTTATATGTAAGAGTTCAAAAGCAGCAATAATCAAGAACACAT-CACTAGCTATACTATTACTAGTTAGTAACAAAGTAGTATAAAGGGCAAGCAAAAGCTAAAGGAAGCTCATTGAGAAATGTCAACTGCTTCCATTAACAATTGCCTTACTCTCTCCCCTGCTCAAGCTTCCCTTAAGAAACCTACTCGTCCCGTTGCCTTCGCAAGGCTTGGCAACTCTTCTTCTTCTTCTTCTATTCCAAGTCTCATCAGAAACGAGCCCGTCTTTGCTGCCCCTACTCCCATCATCAACCCCATTGTGGTACGAATTTTTAACTTACATCACTGTATTTTAATCTGTTATAACAAGTTATTTATATTTGACGTTACTTAATTTATTTTTTAAGCAAGACATTTTTTTTGTCTTATCGTATTTTTTGTAACGACTTGTGTCCATGCATGCTAGTTCACGTGAAAATTCAATATTGGCATAGTTCTAAACTTTAGTTTCTAACCACCTTTATTATTGGTATTGTTATTTTTGGCCATGAATCTCCTGAAGTTAGGTGAATTGATCATGTCGCTCTAAATTGTACACGTCTATTGCGTGTACTCAATGACATATAATATATTATTGCAATCCTAAAATAAGTGTTATTTTAATTTATTTTGAACTCATTAAAATAAATATGATATTTTACTGAGTTACTTATATTTATTACTTTGATTTTTTTGAGTACTAATTTGTATTTTGAAACTTTTAAGATGACGAGAGGGTGGAAATAACAAATTAAATTTGAAAATGAACCAAAATAGAGGTGGCAATTAGGTAGAGGTTCTCGCAAAATGAATATTAAATATGTAGGGCCGTATTGTGAATTATGTGGATAATGTTTTTGCTTTCTATTTTTTTTTAAAAAAAATAATTATTACTTACAATAATCCAACGGGTATCCTCGTATGTGCCCATCCTACAAGTGATAAAATGATAAGTACCAGTCTACCATCAAGTTTGTAGGATAGAAACTATTTAGTATACATTGTTTTTGTCTTAATTTCTAGTTTTGGTATCCATCTAAATCGATACTCCATTATGTTAATTATTTCATTTCTTTCTTTTGACATCTACATCACTTTTTAATGTGGTTACCACTTGCTATAATCATACTTCACTTAGCATTTTATTTGAACTTAGTGAAAGTGAAATTTTTCCTAATAATTGGTCTAAAAATTGAAGAAGATTAAAGCCAAGAAATTGAGTTCTTCCTTCTTTCTTCCAACTTTGAAAGTACCGATAGATACTATCATATAAAAAGAAGAGGTGGTCTGACTAACTCAATGAAGTGAATTTTTCAAAAACATGCTCAGAAAAATGAGAAAAATGGAGTTTTTGAAAAGAAAAATTAACAGATATTTAAAGATAAATTTTTGAAATTTGGTTCAAAATTTATGGTCAAATATTAACTTATATTTATATATATACCTCTTCTAAAATGCTAATGAGAATTAGAATTTGCAGAGAGAAGAAATGGCAAAAGAATCCTACGA</genome_strand>
        <mrna_strand>AGTTTTAAAGCAAAAGTAAGATGCAACATTGAATCTCCAACGTACAAACCTCATCTACAATGGATTGAAGCTCTCATTTGCTTAGCCATCACTTTCAACATTGTCTATTGGATTGGTTATATGTAAGAGTCCTCAAGAAGCAATAATCAAGGACCCATCCACTAGCTATAATATTACTAGTGAGTAACAAAGTAATATAAAGGGCAAGCAAAAGCTAAAGGAAGCTCATTGAGAAATGTCAACTGCTTCCATTAACAATTGCCTTACTATCTCCCCTGCTCAAGCTTCCCTTAAGAAACCTACTCGTCCCGTTGCCTTCGCAAGGCTTGGCAACTCTTCTTC-TC--CTTCTATTCCAAGTCTCATCAGAAACGAGCCCGTCTTTGCTGCTCCTACTCGCATCATCAACCCCATTGTG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGAGAAGAAATGGCAAAAGAATCCTACGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0236E02-u8qcS/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E725560" ref_strand="+" ref_description="SGN-E725560 [LA04AC04]">
      <seq>gaaagccgagcgactactagatagtagcaaggcagtctgaagtgcaggcagcagctaagggacgcttattgagaaatgtgaactcgctttaattaacaattgccttactctctcccctgctcaagcttcccttaagaaacctactcgtcccgttgccttcgcaaggcttggcaactcttcttcttcttcttctattccaagtctcatcagaaacgagcccgtctttgctgcccctactcccatcatcaaccccattgtgagagaagaaatggcaaaagaatcctacgatcaagccattgctgcactcgagaaactcctcagcgagaaagcagaacttggaccagttgctgcagcaagagttgaccagatcactgctgaattgaaatcagcagacggcggcaaggcattcgaccctgttgagcacatgaaagctggctttattcatttcaagactgagaaatatgacacaaacccagccttatatggtgagctagcaaagggccagagccctaaagtcatggttttcgcgtgctctgactcacgagtctg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0236E02-u8qcS/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0236E02.1" temp_strand="+" temp_description="C02HBa0236E02.1  AC215430.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0236E02 sequenced_by:kribb upload_account_name:korea">
        <position start="14635" stop="17523"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="14925" g_stop="15182" g_length="258"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="259" r_length="259" r_score="0.895"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="15183" i_stop="16379" i_length="1197">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.971" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="16380" g_stop="16441" g_length="62"/>
          <reference_exon_boundary r_type="cDNA" r_start="260" r_stop="321" r_length="62" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="16442" i_stop="16813" i_length="372">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="16814" g_stop="16957" g_length="144"/>
          <reference_exon_boundary r_type="cDNA" r_start="322" r_stop="465" r_length="144" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="16958" i_stop="17055" i_length="98">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="17056" g_stop="17104" g_length="49"/>
          <reference_exon_boundary r_type="cDNA" r_start="466" r_stop="514" r_length="49" r_score="0.980"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="17105" i_stop="17188" i_length="84">
            <donor d_prob="1.000" d_score="0.98"/>
            <acceptor a_prob="0.961" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="17189" g_stop="17223" g_length="35"/>
          <reference_exon_boundary r_type="cDNA" r_start="515" r_stop="549" r_length="35" r_score="0.971"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0236E02.1" gen_strand="+" ref_id="SGN-E725560" ref_strand="+">
        <total_alignment_score>0.942</total_alignment_score>
        <cumulative_length_of_scored_exons>548</cumulative_length_of_scored_exons>
        <coverage percentage="0.998" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0236E02.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E725560" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="14925" e_stop="15182"/>
          <exon e_start="16380" e_stop="16441"/>
          <exon e_start="16814" e_stop="16957"/>
          <exon e_start="17056" e_stop="17104"/>
          <exon e_start="17189" e_stop="17223"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACTAGCTATACTATTACTAGTTAGTAACAAAGTAGTATAAAGGGCAAGCAAAAGCTAAAGGAAGCTCATTGAGAAATGTCAACT-GCTTCCATTAACAATTGCCTTACTCTCTCCCCTGCTCAAGCTTCCCTTAAGAAACCTACTCGTCCCGTTGCCTTCGCAAGGCTTGGCAACTCTTCTTCTTCTTCTTCTATTCCAAGTCTCATCAGAAACGAGCCCGTCTTTGCTGCCCCTACTCCCATCATCAACCCCATTGTGGTACGAATTTTTAACTTACATCACTGTATTTTAATCTGTTATAACAAGTTATTTATATTTGACGTTACTTAATTTATTTTTTAAGCAAGACATTTTTTTTGTCTTATCGTATTTTTTGTAACGACTTGTGTCCATGCATGCTAGTTCACGTGAAAATTCAATATTGGCATAGTTCTAAACTTTAGTTTCTAACCACCTTTATTATTGGTATTGTTATTTTTGGCCATGAATCTCCTGAAGTTAGGTGAATTGATCATGTCGCTCTAAATTGTACACGTCTATTGCGTGTACTCAATGACATATAATATATTATTGCAATCCTAAAATAAGTGTTATTTTAATTTATTTTGAACTCATTAAAATAAATATGATATTTTACTGAGTTACTTATATTTATTACTTTGATTTTTTTGAGTACTAATTTGTATTTTGAAACTTTTAAGATGACGAGAGGGTGGAAATAACAAATTAAATTTGAAAATGAACCAAAATAGAGGTGGCAATTAGGTAGAGGTTCTCGCAAAATGAATATTAAATATGTAGGGCCGTATTGTGAATTATGTGGATAATGTTTTTGCTTTCTATTTTTTTTTAAAAAAAATAATTATTACTTACAATAATCCAACGGGTATCCTCGTATGTGCCCATCCTACAAGTGATAAAATGATAAGTACCAGTCTACCATCAAGTTTGTAGGATAGAAACTATTTAGTATACATTGTTTTTGTCTTAATTTCTAGTTTTGGTATCCATCTAAATCGATACTCCATTATGTTAATTATTTCATTTCTTTCTTTTGACATCTACATCACTTTTTAATGTGGTTACCACTTGCTATAATCATACTTCACTTAGCATTTTATTTGAACTTAGTGAAAGTGAAATTTTTCCTAATAATTGGTCTAAAAATTGAAGAAGATTAAAGCCAAGAAATTGAGTTCTTCCTTCTTTCTTCCAACTTTGAAAGTACCGATAGATACTATCATATAAAAAGAAGAGGTGGTCTGACTAACTCAATGAAGTGAATTTTTCAAAAACATGCTCAGAAAAATGAGAAAAATGGAGTTTTTGAAAAGAAAAATTAACAGATATTTAAAGATAAATTTTTGAAATTTGGTTCAAAATTTATGGTCAAATATTAACTTATATTTATATATATACCTCTTCTAAAATGCTAATGAGAATTAGAATTTGCAGAGAGAAGAAATGGCAAAAGAATCCTACGATCAAGCCATTGCTGCACTCGAGAAACTCCTCAGGTTTGTACTCTCTCTACGACTCTACCTTCTAAATCACACTACTTTTTTCTCGATCAAGTGGGGCCCAAAAAATATACATACACCCACACATACGTAGACAAAAAAAATGTTAAAATTTGCGAATATGCAGAGAAAACATAATATAATCATGCAATGTTTACTCGTAAAATTCAATTTCCCGGCAATGAACATGTTACTTGGTTTCGAGTTCTCCAGATCTGCATTAATTTTACCATTCTATCATCATTTTTTTACCCCATATCTGCATTAATTTATCATGGTAATGGTGCTCAAACCACAAATCTTTTTTTTTTCTACCTGAAATATTGCTTCAATAATAATAATGGTCTAAATTATTTTCTGCAATTACAGCGAGAAAGCAGAACTTGGACCAGTTGCTGCAGCAAGAGTTGACCAGATCACTGCTGAATTGAAATCAGCAGACGGCGGCAAGGCATTCGACCCTGTTGAGCACATGAAAGCTGGCTTTATTCATTTCAAGACTGAGAAATATGAGTAAGCAAATTCATTCAAATTAAAATTTCTGCATATTTGATGTTGTAACATTATTAGTGTCTGATAATTTTTCCTGTTTTCTATTTATGTACCAACAGCACAAACCCAGCCTTATATGGTGAGCTAGCAAAGGGCCAGAGCCCTAAGGTACAAATTCCTTGTTAATTTGTTGTCTAATTTTATGATTTGTACGGTTTCTGATGAGTTCTATTGTCCTAAATGTGTAAACAGTTCATGGTTTTCGCGTGCTCTGACTCACGAGTCTG</genome_strand>
        <mrna_strand>GAAAGCCGAGCGACTACTAGATAGTAGCAAGGCAGTCTGAAGTGCAGGCAGCAGCTAAGGGACGCTTATTGAGAAATGTGAACTCGCTTTAATTAACAATTGCCTTACTCTCTCCCCTGCTCAAGCTTCCCTTAAGAAACCTACTCGTCCCGTTGCCTTCGCAAGGCTTGGCAACTCTTCTTCTTCTTCTTCTATTCCAAGTCTCATCAGAAACGAGCCCGTCTTTGCTGCCCCTACTCCCATCATCAACCCCATTGTG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGAGAAGAAATGGCAAAAGAATCCTACGATCAAGCCATTGCTGCACTCGAGAAACTCCTCAG....................................................................................................................................................................................................................................................................................................................................................................................CGAGAAAGCAGAACTTGGACCAGTTGCTGCAGCAAGAGTTGACCAGATCACTGCTGAATTGAAATCAGCAGACGGCGGCAAGGCATTCGACCCTGTTGAGCACATGAAAGCTGGCTTTATTCATTTCAAGACTGAGAAATATGA..................................................................................................CACAAACCCAGCCTTATATGGTGAGCTAGCAAAGGGCCAGAGCCCTAAA....................................................................................GTCATGGTTTTCGCGTGCTCTGACTCACGAGTCTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0236E02-u8qcS/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E395231" ref_strand="+" ref_description="SGN-E395231 [TUS-45-G22]">
      <seq>tagctatactattactagttagtaacaaagtagtataaagggcaagcaaaagctaaaggaagctcattgagaaatgtcaactgcttccattaacaattgccttactctctcccctgctcaagcttcccttaagaaacctactcgtcccgttgccttcgcaaggcttggcaactcttcttcttcttcttctattccaagtctcatcagaaacgagcccgtctttgctgcccctactcccatcatcaaccccattgtgagagaagaaatggcaaaagaatcctacgatcaagccattgctgcactcgagaaactcctcagcgagaaagcagaacttggaccagttgctgcagcaagagttgaccagatcactgctgaattgaaatcagcagacggcggcaaggcattcgaccctgttgagcacatgaaagctggctttattcatttcaagactgagaaatatgacacaaacccagccttatatggtgagctagcaaagggccagagccctaagttcatggttttcgcgtgctctgactcacgagtctgcccatcccatgtcctcaacttccaacctggtgaggcattcatggttcgtaacatcgccaacatggtccctgcttatgacaaggtcaggtact</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0236E02-u8qcS/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0236E02.1" temp_strand="+" temp_description="C02HBa0236E02.1  AC215430.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0236E02 sequenced_by:kribb upload_account_name:korea">
        <position start="14627" stop="17614"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="14927" g_stop="15182" g_length="256"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="256" r_length="256" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="15183" i_stop="16379" i_length="1197">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.971" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="16380" g_stop="16441" g_length="62"/>
          <reference_exon_boundary r_type="cDNA" r_start="257" r_stop="318" r_length="62" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="16442" i_stop="16813" i_length="372">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="16814" g_stop="16957" g_length="144"/>
          <reference_exon_boundary r_type="cDNA" r_start="319" r_stop="462" r_length="144" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="16958" i_stop="17055" i_length="98">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="17056" g_stop="17104" g_length="49"/>
          <reference_exon_boundary r_type="cDNA" r_start="463" r_stop="511" r_length="49" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="17105" i_stop="17188" i_length="84">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.961" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="17189" g_stop="17305" g_length="117"/>
          <reference_exon_boundary r_type="cDNA" r_start="512" r_stop="628" r_length="117" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="17306" i_stop="17390" i_length="85">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.979" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="17391" g_stop="17400" g_length="10"/>
          <reference_exon_boundary r_type="cDNA" r_start="629" r_stop="638" r_length="10" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0236E02.1" gen_strand="+" ref_id="SGN-E395231" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>638</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0236E02.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E395231" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="14927" e_stop="15182"/>
          <exon e_start="16380" e_stop="16441"/>
          <exon e_start="16814" e_stop="16957"/>
          <exon e_start="17056" e_stop="17104"/>
          <exon e_start="17189" e_stop="17305"/>
          <exon e_start="17391" e_stop="17400"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TAGCTATACTATTACTAGTTAGTAACAAAGTAGTATAAAGGGCAAGCAAAAGCTAAAGGAAGCTCATTGAGAAATGTCAACTGCTTCCATTAACAATTGCCTTACTCTCTCCCCTGCTCAAGCTTCCCTTAAGAAACCTACTCGTCCCGTTGCCTTCGCAAGGCTTGGCAACTCTTCTTCTTCTTCTTCTATTCCAAGTCTCATCAGAAACGAGCCCGTCTTTGCTGCCCCTACTCCCATCATCAACCCCATTGTGGTACGAATTTTTAACTTACATCACTGTATTTTAATCTGTTATAACAAGTTATTTATATTTGACGTTACTTAATTTATTTTTTAAGCAAGACATTTTTTTTGTCTTATCGTATTTTTTGTAACGACTTGTGTCCATGCATGCTAGTTCACGTGAAAATTCAATATTGGCATAGTTCTAAACTTTAGTTTCTAACCACCTTTATTATTGGTATTGTTATTTTTGGCCATGAATCTCCTGAAGTTAGGTGAATTGATCATGTCGCTCTAAATTGTACACGTCTATTGCGTGTACTCAATGACATATAATATATTATTGCAATCCTAAAATAAGTGTTATTTTAATTTATTTTGAACTCATTAAAATAAATATGATATTTTACTGAGTTACTTATATTTATTACTTTGATTTTTTTGAGTACTAATTTGTATTTTGAAACTTTTAAGATGACGAGAGGGTGGAAATAACAAATTAAATTTGAAAATGAACCAAAATAGAGGTGGCAATTAGGTAGAGGTTCTCGCAAAATGAATATTAAATATGTAGGGCCGTATTGTGAATTATGTGGATAATGTTTTTGCTTTCTATTTTTTTTTAAAAAAAATAATTATTACTTACAATAATCCAACGGGTATCCTCGTATGTGCCCATCCTACAAGTGATAAAATGATAAGTACCAGTCTACCATCAAGTTTGTAGGATAGAAACTATTTAGTATACATTGTTTTTGTCTTAATTTCTAGTTTTGGTATCCATCTAAATCGATACTCCATTATGTTAATTATTTCATTTCTTTCTTTTGACATCTACATCACTTTTTAATGTGGTTACCACTTGCTATAATCATACTTCACTTAGCATTTTATTTGAACTTAGTGAAAGTGAAATTTTTCCTAATAATTGGTCTAAAAATTGAAGAAGATTAAAGCCAAGAAATTGAGTTCTTCCTTCTTTCTTCCAACTTTGAAAGTACCGATAGATACTATCATATAAAAAGAAGAGGTGGTCTGACTAACTCAATGAAGTGAATTTTTCAAAAACATGCTCAGAAAAATGAGAAAAATGGAGTTTTTGAAAAGAAAAATTAACAGATATTTAAAGATAAATTTTTGAAATTTGGTTCAAAATTTATGGTCAAATATTAACTTATATTTATATATATACCTCTTCTAAAATGCTAATGAGAATTAGAATTTGCAGAGAGAAGAAATGGCAAAAGAATCCTACGATCAAGCCATTGCTGCACTCGAGAAACTCCTCAGGTTTGTACTCTCTCTACGACTCTACCTTCTAAATCACACTACTTTTTTCTCGATCAAGTGGGGCCCAAAAAATATACATACACCCACACATACGTAGACAAAAAAAATGTTAAAATTTGCGAATATGCAGAGAAAACATAATATAATCATGCAATGTTTACTCGTAAAATTCAATTTCCCGGCAATGAACATGTTACTTGGTTTCGAGTTCTCCAGATCTGCATTAATTTTACCATTCTATCATCATTTTTTTACCCCATATCTGCATTAATTTATCATGGTAATGGTGCTCAAACCACAAATCTTTTTTTTTTCTACCTGAAATATTGCTTCAATAATAATAATGGTCTAAATTATTTTCTGCAATTACAGCGAGAAAGCAGAACTTGGACCAGTTGCTGCAGCAAGAGTTGACCAGATCACTGCTGAATTGAAATCAGCAGACGGCGGCAAGGCATTCGACCCTGTTGAGCACATGAAAGCTGGCTTTATTCATTTCAAGACTGAGAAATATGAGTAAGCAAATTCATTCAAATTAAAATTTCTGCATATTTGATGTTGTAACATTATTAGTGTCTGATAATTTTTCCTGTTTTCTATTTATGTACCAACAGCACAAACCCAGCCTTATATGGTGAGCTAGCAAAGGGCCAGAGCCCTAAGGTACAAATTCCTTGTTAATTTGTTGTCTAATTTTATGATTTGTACGGTTTCTGATGAGTTCTATTGTCCTAAATGTGTAAACAGTTCATGGTTTTCGCGTGCTCTGACTCACGAGTCTGCCCATCCCATGTCCTCAACTTCCAACCTGGTGAGGCATTCATGGTTCGTAACATCGCCAACATGGTCCCTGCTTATGACAAGGTCAGTTACAAATCGATCAACTAGTCGATTATTTCGCTCTGGAATTGTGTTTTTTAAAAATAAAGATGGAATTGAATTTTTACAGGTCAGGTACT</genome_strand>
        <mrna_strand>TAGCTATACTATTACTAGTTAGTAACAAAGTAGTATAAAGGGCAAGCAAAAGCTAAAGGAAGCTCATTGAGAAATGTCAACTGCTTCCATTAACAATTGCCTTACTCTCTCCCCTGCTCAAGCTTCCCTTAAGAAACCTACTCGTCCCGTTGCCTTCGCAAGGCTTGGCAACTCTTCTTCTTCTTCTTCTATTCCAAGTCTCATCAGAAACGAGCCCGTCTTTGCTGCCCCTACTCCCATCATCAACCCCATTGTG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGAGAAGAAATGGCAAAAGAATCCTACGATCAAGCCATTGCTGCACTCGAGAAACTCCTCAG....................................................................................................................................................................................................................................................................................................................................................................................CGAGAAAGCAGAACTTGGACCAGTTGCTGCAGCAAGAGTTGACCAGATCACTGCTGAATTGAAATCAGCAGACGGCGGCAAGGCATTCGACCCTGTTGAGCACATGAAAGCTGGCTTTATTCATTTCAAGACTGAGAAATATGA..................................................................................................CACAAACCCAGCCTTATATGGTGAGCTAGCAAAGGGCCAGAGCCCTAAG....................................................................................TTCATGGTTTTCGCGTGCTCTGACTCACGAGTCTGCCCATCCCATGTCCTCAACTTCCAACCTGGTGAGGCATTCATGGTTCGTAACATCGCCAACATGGTCCCTGCTTATGACAAG.....................................................................................GTCAGGTACT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0236E02-u8qcS/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E731619" ref_strand="+" ref_description="SGN-E731619 [LA27CF11]">
      <seq>agctatactattactagttagtaacaaagtagtataaagggcaagcaaaagctaaaggaagctcattgagaaatgtcaactgcttccattaacaattgccttactctctcccctgctcaagcttcccttaagaaacctactcgtcccgttgccttcgcaaggcttggcaactcttcttcttcttcttctattccaagtctcatcagaaacgagcccgtctttgctgcccctactcccatcatcaaccccattgtgagagaagaaatggcaaaagaatcctacgatcaagccattgctgcactcgagaaactcctcagcgagaaagcagaacttggaccagttgctgcagcaagagttgaccagatcactgctgaattgaaatcagcagacggcggcaaggcattcgaccctgttgagcacatgaaagctggctttattcatttcaagactgagaaatatgacacaaacccagccttatatggtgagctagcaaagggccagagccctaagttcatggttttcgcgtgctctgactcacgagtctgcccatcccatgtcctcaacttccaacctggtgaggcattcatggttcgtaacatcgccaacatggtccctgcttatgacaaggtcaggtactctggagtaggagcagccattgaatacgccgttcttcatcttaaggtggagaacatcgttgtcattggccacagtgcttgtggaggtatcaaaggtctcatgtcactacctgaagatggtagtgaatcaactgcctttattgangattgggtaaaaatttgtttacctgccaaggcaaaggttctggccgatcacggagggaaagaatttgcacat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0236E02-u8qcS/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0236E02.1" temp_strand="+" temp_description="C02HBa0236E02.1  AC215430.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0236E02 sequenced_by:kribb upload_account_name:korea">
        <position start="14628" stop="17992"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="14928" g_stop="15182" g_length="255"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="255" r_length="255" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="15183" i_stop="16379" i_length="1197">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.971" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="16380" g_stop="16441" g_length="62"/>
          <reference_exon_boundary r_type="cDNA" r_start="256" r_stop="317" r_length="62" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="16442" i_stop="16813" i_length="372">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="16814" g_stop="16957" g_length="144"/>
          <reference_exon_boundary r_type="cDNA" r_start="318" r_stop="461" r_length="144" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="16958" i_stop="17055" i_length="98">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="17056" g_stop="17104" g_length="49"/>
          <reference_exon_boundary r_type="cDNA" r_start="462" r_stop="510" r_length="49" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="17105" i_stop="17188" i_length="84">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.961" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="17189" g_stop="17305" g_length="117"/>
          <reference_exon_boundary r_type="cDNA" r_start="511" r_stop="627" r_length="117" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="17306" i_stop="17390" i_length="85">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.979" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="17391" g_stop="17530" g_length="140"/>
          <reference_exon_boundary r_type="cDNA" r_start="628" r_stop="767" r_length="140" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="17531" i_stop="17607" i_length="77">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.948" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="17608" g_stop="17692" g_length="85"/>
          <reference_exon_boundary r_type="cDNA" r_start="768" r_stop="852" r_length="85" r_score="0.988"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0236E02.1" gen_strand="+" ref_id="SGN-E731619" ref_strand="+">
        <total_alignment_score>0.999</total_alignment_score>
        <cumulative_length_of_scored_exons>852</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0236E02.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E731619" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="14928" e_stop="15182"/>
          <exon e_start="16380" e_stop="16441"/>
          <exon e_start="16814" e_stop="16957"/>
          <exon e_start="17056" e_stop="17104"/>
          <exon e_start="17189" e_stop="17305"/>
          <exon e_start="17391" e_stop="17530"/>
          <exon e_start="17608" e_stop="17692"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGCTATACTATTACTAGTTAGTAACAAAGTAGTATAAAGGGCAAGCAAAAGCTAAAGGAAGCTCATTGAGAAATGTCAACTGCTTCCATTAACAATTGCCTTACTCTCTCCCCTGCTCAAGCTTCCCTTAAGAAACCTACTCGTCCCGTTGCCTTCGCAAGGCTTGGCAACTCTTCTTCTTCTTCTTCTATTCCAAGTCTCATCAGAAACGAGCCCGTCTTTGCTGCCCCTACTCCCATCATCAACCCCATTGTGGTACGAATTTTTAACTTACATCACTGTATTTTAATCTGTTATAACAAGTTATTTATATTTGACGTTACTTAATTTATTTTTTAAGCAAGACATTTTTTTTGTCTTATCGTATTTTTTGTAACGACTTGTGTCCATGCATGCTAGTTCACGTGAAAATTCAATATTGGCATAGTTCTAAACTTTAGTTTCTAACCACCTTTATTATTGGTATTGTTATTTTTGGCCATGAATCTCCTGAAGTTAGGTGAATTGATCATGTCGCTCTAAATTGTACACGTCTATTGCGTGTACTCAATGACATATAATATATTATTGCAATCCTAAAATAAGTGTTATTTTAATTTATTTTGAACTCATTAAAATAAATATGATATTTTACTGAGTTACTTATATTTATTACTTTGATTTTTTTGAGTACTAATTTGTATTTTGAAACTTTTAAGATGACGAGAGGGTGGAAATAACAAATTAAATTTGAAAATGAACCAAAATAGAGGTGGCAATTAGGTAGAGGTTCTCGCAAAATGAATATTAAATATGTAGGGCCGTATTGTGAATTATGTGGATAATGTTTTTGCTTTCTATTTTTTTTTAAAAAAAATAATTATTACTTACAATAATCCAACGGGTATCCTCGTATGTGCCCATCCTACAAGTGATAAAATGATAAGTACCAGTCTACCATCAAGTTTGTAGGATAGAAACTATTTAGTATACATTGTTTTTGTCTTAATTTCTAGTTTTGGTATCCATCTAAATCGATACTCCATTATGTTAATTATTTCATTTCTTTCTTTTGACATCTACATCACTTTTTAATGTGGTTACCACTTGCTATAATCATACTTCACTTAGCATTTTATTTGAACTTAGTGAAAGTGAAATTTTTCCTAATAATTGGTCTAAAAATTGAAGAAGATTAAAGCCAAGAAATTGAGTTCTTCCTTCTTTCTTCCAACTTTGAAAGTACCGATAGATACTATCATATAAAAAGAAGAGGTGGTCTGACTAACTCAATGAAGTGAATTTTTCAAAAACATGCTCAGAAAAATGAGAAAAATGGAGTTTTTGAAAAGAAAAATTAACAGATATTTAAAGATAAATTTTTGAAATTTGGTTCAAAATTTATGGTCAAATATTAACTTATATTTATATATATACCTCTTCTAAAATGCTAATGAGAATTAGAATTTGCAGAGAGAAGAAATGGCAAAAGAATCCTACGATCAAGCCATTGCTGCACTCGAGAAACTCCTCAGGTTTGTACTCTCTCTACGACTCTACCTTCTAAATCACACTACTTTTTTCTCGATCAAGTGGGGCCCAAAAAATATACATACACCCACACATACGTAGACAAAAAAAATGTTAAAATTTGCGAATATGCAGAGAAAACATAATATAATCATGCAATGTTTACTCGTAAAATTCAATTTCCCGGCAATGAACATGTTACTTGGTTTCGAGTTCTCCAGATCTGCATTAATTTTACCATTCTATCATCATTTTTTTACCCCATATCTGCATTAATTTATCATGGTAATGGTGCTCAAACCACAAATCTTTTTTTTTTCTACCTGAAATATTGCTTCAATAATAATAATGGTCTAAATTATTTTCTGCAATTACAGCGAGAAAGCAGAACTTGGACCAGTTGCTGCAGCAAGAGTTGACCAGATCACTGCTGAATTGAAATCAGCAGACGGCGGCAAGGCATTCGACCCTGTTGAGCACATGAAAGCTGGCTTTATTCATTTCAAGACTGAGAAATATGAGTAAGCAAATTCATTCAAATTAAAATTTCTGCATATTTGATGTTGTAACATTATTAGTGTCTGATAATTTTTCCTGTTTTCTATTTATGTACCAACAGCACAAACCCAGCCTTATATGGTGAGCTAGCAAAGGGCCAGAGCCCTAAGGTACAAATTCCTTGTTAATTTGTTGTCTAATTTTATGATTTGTACGGTTTCTGATGAGTTCTATTGTCCTAAATGTGTAAACAGTTCATGGTTTTCGCGTGCTCTGACTCACGAGTCTGCCCATCCCATGTCCTCAACTTCCAACCTGGTGAGGCATTCATGGTTCGTAACATCGCCAACATGGTCCCTGCTTATGACAAGGTCAGTTACAAATCGATCAACTAGTCGATTATTTCGCTCTGGAATTGTGTTTTTTAAAAATAAAGATGGAATTGAATTTTTACAGGTCAGGTACTCTGGAGTAGGAGCAGCCATTGAATACGCCGTTCTTCATCTTAAGGTGGAGAACATCGTTGTCATTGGCCACAGTGCTTGTGGAGGTATCAAAGGTCTCATGTCACTACCTGAAGATGGTAGTGAATCAACGTACGTCACTCTATAAATCTATTCATTCAAAACACTTATCCTTAACAGATGATTGATTAATAATCTAATATACGCAGTGCCTTTATTGAGGATTGGGTAAAAATTTGTTTACCTGCCAAGGCAAAGGTTCTGGCCGATCACGGAGGGAAAGAATTTGCACAT</genome_strand>
        <mrna_strand>AGCTATACTATTACTAGTTAGTAACAAAGTAGTATAAAGGGCAAGCAAAAGCTAAAGGAAGCTCATTGAGAAATGTCAACTGCTTCCATTAACAATTGCCTTACTCTCTCCCCTGCTCAAGCTTCCCTTAAGAAACCTACTCGTCCCGTTGCCTTCGCAAGGCTTGGCAACTCTTCTTCTTCTTCTTCTATTCCAAGTCTCATCAGAAACGAGCCCGTCTTTGCTGCCCCTACTCCCATCATCAACCCCATTGTG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGAGAAGAAATGGCAAAAGAATCCTACGATCAAGCCATTGCTGCACTCGAGAAACTCCTCAG....................................................................................................................................................................................................................................................................................................................................................................................CGAGAAAGCAGAACTTGGACCAGTTGCTGCAGCAAGAGTTGACCAGATCACTGCTGAATTGAAATCAGCAGACGGCGGCAAGGCATTCGACCCTGTTGAGCACATGAAAGCTGGCTTTATTCATTTCAAGACTGAGAAATATGA..................................................................................................CACAAACCCAGCCTTATATGGTGAGCTAGCAAAGGGCCAGAGCCCTAAG....................................................................................TTCATGGTTTTCGCGTGCTCTGACTCACGAGTCTGCCCATCCCATGTCCTCAACTTCCAACCTGGTGAGGCATTCATGGTTCGTAACATCGCCAACATGGTCCCTGCTTATGACAAG.....................................................................................GTCAGGTACTCTGGAGTAGGAGCAGCCATTGAATACGCCGTTCTTCATCTTAAGGTGGAGAACATCGTTGTCATTGGCCACAGTGCTTGTGGAGGTATCAAAGGTCTCATGTCACTACCTGAAGATGGTAGTGAATCAAC.............................................................................TGCCTTTATTGANGATTGGGTAAAAATTTGTTTACCTGCCAAGGCAAAGGTTCTGGCCGATCACGGAGGGAAAGAATTTGCACAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0236E02-u8qcS/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E731699" ref_strand="+" ref_description="SGN-E731699 [LA27DF11]">
      <seq>agctatactattactagttagtaacaaagtagtataaagggcaagcaaaagctaaaggaagctcattgagaaatgtcaactgcttccattaacaattgccttactctctcccctgctcaagcttcccttaagaaacctactcgtcccgttgccttcgcaaggcttggcaactcttcttcttcttcttctattccaagtctcatcagaaacgagcccgtctttgctgcccctactcccatcatcaaccccattgtgagagaagaaatggcaaaagaatcctacgatcaagccattgctgcactcgagaaactcctcagcgagaaagcagaacttggaccagttgctgcagcaagagttgaccagatcactgctgaattgaaatcagcagacggcggcaaggcattcgaccctgttgagcacatgaaagctggctttattcatttcaagactgagaaatatgacacaaacccagccttatatggtgagctagcaaagggccagagccctaagttcatggttttcgcgtgctctgactcacgagtctgcccatcccatgtcctcaacttccaacctggtgaggcattcatggttcgtaacatcgccaacatggtccctgcttatgacaaggtcaggtactctggagtaggagcagccattgaatacgccgttcttcatcttaaggtggagaacatcgttgtcattggccacagtgcttgtggaggtatcaaaggtctcatgtcactacctgaagatggtagtgaatcaactgcctttattgaggattgggtaaaaaatttgtttacctgc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0236E02-u8qcS/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0236E02.1" temp_strand="+" temp_description="C02HBa0236E02.1  AC215430.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0236E02 sequenced_by:kribb upload_account_name:korea">
        <position start="14628" stop="17946"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="14928" g_stop="15182" g_length="255"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="255" r_length="255" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="15183" i_stop="16379" i_length="1197">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.971" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="16380" g_stop="16441" g_length="62"/>
          <reference_exon_boundary r_type="cDNA" r_start="256" r_stop="317" r_length="62" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="16442" i_stop="16813" i_length="372">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="16814" g_stop="16957" g_length="144"/>
          <reference_exon_boundary r_type="cDNA" r_start="318" r_stop="461" r_length="144" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="16958" i_stop="17055" i_length="98">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="17056" g_stop="17104" g_length="49"/>
          <reference_exon_boundary r_type="cDNA" r_start="462" r_stop="510" r_length="49" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="17105" i_stop="17188" i_length="84">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.961" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="17189" g_stop="17305" g_length="117"/>
          <reference_exon_boundary r_type="cDNA" r_start="511" r_stop="627" r_length="117" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="17306" i_stop="17390" i_length="85">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.979" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="17391" g_stop="17530" g_length="140"/>
          <reference_exon_boundary r_type="cDNA" r_start="628" r_stop="767" r_length="140" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="17531" i_stop="17607" i_length="77">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.948" a_score="0.95"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="17608" g_stop="17646" g_length="39"/>
          <reference_exon_boundary r_type="cDNA" r_start="768" r_stop="807" r_length="40" r_score="0.949"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0236E02.1" gen_strand="+" ref_id="SGN-E731699" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>806</cumulative_length_of_scored_exons>
        <coverage percentage="0.999" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0236E02.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E731699" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="14928" e_stop="15182"/>
          <exon e_start="16380" e_stop="16441"/>
          <exon e_start="16814" e_stop="16957"/>
          <exon e_start="17056" e_stop="17104"/>
          <exon e_start="17189" e_stop="17305"/>
          <exon e_start="17391" e_stop="17530"/>
          <exon e_start="17608" e_stop="17646"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGCTATACTATTACTAGTTAGTAACAAAGTAGTATAAAGGGCAAGCAAAAGCTAAAGGAAGCTCATTGAGAAATGTCAACTGCTTCCATTAACAATTGCCTTACTCTCTCCCCTGCTCAAGCTTCCCTTAAGAAACCTACTCGTCCCGTTGCCTTCGCAAGGCTTGGCAACTCTTCTTCTTCTTCTTCTATTCCAAGTCTCATCAGAAACGAGCCCGTCTTTGCTGCCCCTACTCCCATCATCAACCCCATTGTGGTACGAATTTTTAACTTACATCACTGTATTTTAATCTGTTATAACAAGTTATTTATATTTGACGTTACTTAATTTATTTTTTAAGCAAGACATTTTTTTTGTCTTATCGTATTTTTTGTAACGACTTGTGTCCATGCATGCTAGTTCACGTGAAAATTCAATATTGGCATAGTTCTAAACTTTAGTTTCTAACCACCTTTATTATTGGTATTGTTATTTTTGGCCATGAATCTCCTGAAGTTAGGTGAATTGATCATGTCGCTCTAAATTGTACACGTCTATTGCGTGTACTCAATGACATATAATATATTATTGCAATCCTAAAATAAGTGTTATTTTAATTTATTTTGAACTCATTAAAATAAATATGATATTTTACTGAGTTACTTATATTTATTACTTTGATTTTTTTGAGTACTAATTTGTATTTTGAAACTTTTAAGATGACGAGAGGGTGGAAATAACAAATTAAATTTGAAAATGAACCAAAATAGAGGTGGCAATTAGGTAGAGGTTCTCGCAAAATGAATATTAAATATGTAGGGCCGTATTGTGAATTATGTGGATAATGTTTTTGCTTTCTATTTTTTTTTAAAAAAAATAATTATTACTTACAATAATCCAACGGGTATCCTCGTATGTGCCCATCCTACAAGTGATAAAATGATAAGTACCAGTCTACCATCAAGTTTGTAGGATAGAAACTATTTAGTATACATTGTTTTTGTCTTAATTTCTAGTTTTGGTATCCATCTAAATCGATACTCCATTATGTTAATTATTTCATTTCTTTCTTTTGACATCTACATCACTTTTTAATGTGGTTACCACTTGCTATAATCATACTTCACTTAGCATTTTATTTGAACTTAGTGAAAGTGAAATTTTTCCTAATAATTGGTCTAAAAATTGAAGAAGATTAAAGCCAAGAAATTGAGTTCTTCCTTCTTTCTTCCAACTTTGAAAGTACCGATAGATACTATCATATAAAAAGAAGAGGTGGTCTGACTAACTCAATGAAGTGAATTTTTCAAAAACATGCTCAGAAAAATGAGAAAAATGGAGTTTTTGAAAAGAAAAATTAACAGATATTTAAAGATAAATTTTTGAAATTTGGTTCAAAATTTATGGTCAAATATTAACTTATATTTATATATATACCTCTTCTAAAATGCTAATGAGAATTAGAATTTGCAGAGAGAAGAAATGGCAAAAGAATCCTACGATCAAGCCATTGCTGCACTCGAGAAACTCCTCAGGTTTGTACTCTCTCTACGACTCTACCTTCTAAATCACACTACTTTTTTCTCGATCAAGTGGGGCCCAAAAAATATACATACACCCACACATACGTAGACAAAAAAAATGTTAAAATTTGCGAATATGCAGAGAAAACATAATATAATCATGCAATGTTTACTCGTAAAATTCAATTTCCCGGCAATGAACATGTTACTTGGTTTCGAGTTCTCCAGATCTGCATTAATTTTACCATTCTATCATCATTTTTTTACCCCATATCTGCATTAATTTATCATGGTAATGGTGCTCAAACCACAAATCTTTTTTTTTTCTACCTGAAATATTGCTTCAATAATAATAATGGTCTAAATTATTTTCTGCAATTACAGCGAGAAAGCAGAACTTGGACCAGTTGCTGCAGCAAGAGTTGACCAGATCACTGCTGAATTGAAATCAGCAGACGGCGGCAAGGCATTCGACCCTGTTGAGCACATGAAAGCTGGCTTTATTCATTTCAAGACTGAGAAATATGAGTAAGCAAATTCATTCAAATTAAAATTTCTGCATATTTGATGTTGTAACATTATTAGTGTCTGATAATTTTTCCTGTTTTCTATTTATGTACCAACAGCACAAACCCAGCCTTATATGGTGAGCTAGCAAAGGGCCAGAGCCCTAAGGTACAAATTCCTTGTTAATTTGTTGTCTAATTTTATGATTTGTACGGTTTCTGATGAGTTCTATTGTCCTAAATGTGTAAACAGTTCATGGTTTTCGCGTGCTCTGACTCACGAGTCTGCCCATCCCATGTCCTCAACTTCCAACCTGGTGAGGCATTCATGGTTCGTAACATCGCCAACATGGTCCCTGCTTATGACAAGGTCAGTTACAAATCGATCAACTAGTCGATTATTTCGCTCTGGAATTGTGTTTTTTAAAAATAAAGATGGAATTGAATTTTTACAGGTCAGGTACTCTGGAGTAGGAGCAGCCATTGAATACGCCGTTCTTCATCTTAAGGTGGAGAACATCGTTGTCATTGGCCACAGTGCTTGTGGAGGTATCAAAGGTCTCATGTCACTACCTGAAGATGGTAGTGAATCAACGTACGTCACTCTATAAATCTATTCATTCAAAACACTTATCCTTAACAGATGATTGATTAATAATCTAATATACGCAGTGCCTTTATTGAGGATTGGGT-AAAAATTTGTTTACCTGC</genome_strand>
        <mrna_strand>AGCTATACTATTACTAGTTAGTAACAAAGTAGTATAAAGGGCAAGCAAAAGCTAAAGGAAGCTCATTGAGAAATGTCAACTGCTTCCATTAACAATTGCCTTACTCTCTCCCCTGCTCAAGCTTCCCTTAAGAAACCTACTCGTCCCGTTGCCTTCGCAAGGCTTGGCAACTCTTCTTCTTCTTCTTCTATTCCAAGTCTCATCAGAAACGAGCCCGTCTTTGCTGCCCCTACTCCCATCATCAACCCCATTGTG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGAGAAGAAATGGCAAAAGAATCCTACGATCAAGCCATTGCTGCACTCGAGAAACTCCTCAG....................................................................................................................................................................................................................................................................................................................................................................................CGAGAAAGCAGAACTTGGACCAGTTGCTGCAGCAAGAGTTGACCAGATCACTGCTGAATTGAAATCAGCAGACGGCGGCAAGGCATTCGACCCTGTTGAGCACATGAAAGCTGGCTTTATTCATTTCAAGACTGAGAAATATGA..................................................................................................CACAAACCCAGCCTTATATGGTGAGCTAGCAAAGGGCCAGAGCCCTAAG....................................................................................TTCATGGTTTTCGCGTGCTCTGACTCACGAGTCTGCCCATCCCATGTCCTCAACTTCCAACCTGGTGAGGCATTCATGGTTCGTAACATCGCCAACATGGTCCCTGCTTATGACAAG.....................................................................................GTCAGGTACTCTGGAGTAGGAGCAGCCATTGAATACGCCGTTCTTCATCTTAAGGTGGAGAACATCGTTGTCATTGGCCACAGTGCTTGTGGAGGTATCAAAGGTCTCATGTCACTACCTGAAGATGGTAGTGAATCAAC.............................................................................TGCCTTTATTGAGGATTGGGTAAAAAATTTGTTTACCTGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0236E02-u8qcS/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E727952" ref_strand="+" ref_description="SGN-E727952 [LA16BA03]">
      <seq>agctctattattactagttagtaacaaagtagtataaagggcaagcaaaagctaaaggaagctcattgagaaatgtcaactgcttccattaacaattgccttactctctcccctgctcaagcttcccttaagaaacctactcgtcccgttgccttcgcaaggcttggcaactcttcttcttcttcttctattccaagtctcatcagaaacgagcccgtctttgctgcccctactcccatcatcaaccccattgtgagagaagaaatggcaaaagaatcctacgatcaagccattgctgcactcgagaaactcctcagcgagaaagcagaacttggaccagttgctgcagcaagagttgaccagatcactgctgaattgaaatcagcagacggcggcaaggcattcgaccctgttgagcacatgaaagctggctttattcatttcaagactgagaaatatgacacaaacccagccttatatggtgagctagcaaagggccagagccctaagttcatggttttcgcgtgctctgactcacgagtctgcccatcccatgtcctcaacttccaacctggtgaggcattcatggttcgtaacatcgccaacatggtccctgcttatgacaaggtcaggtactctggagtaggagcagccattgaatacgccgttcttcatcttaaggtggagaacatcgttgtcattggccacagtgcttgtggaggtatcaaaggtctcatgtcactacctgaagatggtagtgaatcaactgcctttattgaggattgggta</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0236E02-u8qcS/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0236E02.1" temp_strand="+" temp_description="C02HBa0236E02.1  AC215430.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0236E02 sequenced_by:kribb upload_account_name:korea">
        <position start="14628" stop="17929"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="14928" g_stop="15182" g_length="255"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="255" r_length="255" r_score="0.992"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="15183" i_stop="16379" i_length="1197">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.971" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="16380" g_stop="16441" g_length="62"/>
          <reference_exon_boundary r_type="cDNA" r_start="256" r_stop="317" r_length="62" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="16442" i_stop="16813" i_length="372">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="16814" g_stop="16957" g_length="144"/>
          <reference_exon_boundary r_type="cDNA" r_start="318" r_stop="461" r_length="144" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="16958" i_stop="17055" i_length="98">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="17056" g_stop="17104" g_length="49"/>
          <reference_exon_boundary r_type="cDNA" r_start="462" r_stop="510" r_length="49" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="17105" i_stop="17188" i_length="84">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.961" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="17189" g_stop="17305" g_length="117"/>
          <reference_exon_boundary r_type="cDNA" r_start="511" r_stop="627" r_length="117" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="17306" i_stop="17390" i_length="85">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.979" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="17391" g_stop="17530" g_length="140"/>
          <reference_exon_boundary r_type="cDNA" r_start="628" r_stop="767" r_length="140" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="17531" i_stop="17607" i_length="77">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.948" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="17608" g_stop="17629" g_length="22"/>
          <reference_exon_boundary r_type="cDNA" r_start="768" r_stop="789" r_length="22" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0236E02.1" gen_strand="+" ref_id="SGN-E727952" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>789</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0236E02.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E727952" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="14928" e_stop="15182"/>
          <exon e_start="16380" e_stop="16441"/>
          <exon e_start="16814" e_stop="16957"/>
          <exon e_start="17056" e_stop="17104"/>
          <exon e_start="17189" e_stop="17305"/>
          <exon e_start="17391" e_stop="17530"/>
          <exon e_start="17608" e_stop="17629"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGCTATACTATTACTAGTTAGTAACAAAGTAGTATAAAGGGCAAGCAAAAGCTAAAGGAAGCTCATTGAGAAATGTCAACTGCTTCCATTAACAATTGCCTTACTCTCTCCCCTGCTCAAGCTTCCCTTAAGAAACCTACTCGTCCCGTTGCCTTCGCAAGGCTTGGCAACTCTTCTTCTTCTTCTTCTATTCCAAGTCTCATCAGAAACGAGCCCGTCTTTGCTGCCCCTACTCCCATCATCAACCCCATTGTGGTACGAATTTTTAACTTACATCACTGTATTTTAATCTGTTATAACAAGTTATTTATATTTGACGTTACTTAATTTATTTTTTAAGCAAGACATTTTTTTTGTCTTATCGTATTTTTTGTAACGACTTGTGTCCATGCATGCTAGTTCACGTGAAAATTCAATATTGGCATAGTTCTAAACTTTAGTTTCTAACCACCTTTATTATTGGTATTGTTATTTTTGGCCATGAATCTCCTGAAGTTAGGTGAATTGATCATGTCGCTCTAAATTGTACACGTCTATTGCGTGTACTCAATGACATATAATATATTATTGCAATCCTAAAATAAGTGTTATTTTAATTTATTTTGAACTCATTAAAATAAATATGATATTTTACTGAGTTACTTATATTTATTACTTTGATTTTTTTGAGTACTAATTTGTATTTTGAAACTTTTAAGATGACGAGAGGGTGGAAATAACAAATTAAATTTGAAAATGAACCAAAATAGAGGTGGCAATTAGGTAGAGGTTCTCGCAAAATGAATATTAAATATGTAGGGCCGTATTGTGAATTATGTGGATAATGTTTTTGCTTTCTATTTTTTTTTAAAAAAAATAATTATTACTTACAATAATCCAACGGGTATCCTCGTATGTGCCCATCCTACAAGTGATAAAATGATAAGTACCAGTCTACCATCAAGTTTGTAGGATAGAAACTATTTAGTATACATTGTTTTTGTCTTAATTTCTAGTTTTGGTATCCATCTAAATCGATACTCCATTATGTTAATTATTTCATTTCTTTCTTTTGACATCTACATCACTTTTTAATGTGGTTACCACTTGCTATAATCATACTTCACTTAGCATTTTATTTGAACTTAGTGAAAGTGAAATTTTTCCTAATAATTGGTCTAAAAATTGAAGAAGATTAAAGCCAAGAAATTGAGTTCTTCCTTCTTTCTTCCAACTTTGAAAGTACCGATAGATACTATCATATAAAAAGAAGAGGTGGTCTGACTAACTCAATGAAGTGAATTTTTCAAAAACATGCTCAGAAAAATGAGAAAAATGGAGTTTTTGAAAAGAAAAATTAACAGATATTTAAAGATAAATTTTTGAAATTTGGTTCAAAATTTATGGTCAAATATTAACTTATATTTATATATATACCTCTTCTAAAATGCTAATGAGAATTAGAATTTGCAGAGAGAAGAAATGGCAAAAGAATCCTACGATCAAGCCATTGCTGCACTCGAGAAACTCCTCAGGTTTGTACTCTCTCTACGACTCTACCTTCTAAATCACACTACTTTTTTCTCGATCAAGTGGGGCCCAAAAAATATACATACACCCACACATACGTAGACAAAAAAAATGTTAAAATTTGCGAATATGCAGAGAAAACATAATATAATCATGCAATGTTTACTCGTAAAATTCAATTTCCCGGCAATGAACATGTTACTTGGTTTCGAGTTCTCCAGATCTGCATTAATTTTACCATTCTATCATCATTTTTTTACCCCATATCTGCATTAATTTATCATGGTAATGGTGCTCAAACCACAAATCTTTTTTTTTTCTACCTGAAATATTGCTTCAATAATAATAATGGTCTAAATTATTTTCTGCAATTACAGCGAGAAAGCAGAACTTGGACCAGTTGCTGCAGCAAGAGTTGACCAGATCACTGCTGAATTGAAATCAGCAGACGGCGGCAAGGCATTCGACCCTGTTGAGCACATGAAAGCTGGCTTTATTCATTTCAAGACTGAGAAATATGAGTAAGCAAATTCATTCAAATTAAAATTTCTGCATATTTGATGTTGTAACATTATTAGTGTCTGATAATTTTTCCTGTTTTCTATTTATGTACCAACAGCACAAACCCAGCCTTATATGGTGAGCTAGCAAAGGGCCAGAGCCCTAAGGTACAAATTCCTTGTTAATTTGTTGTCTAATTTTATGATTTGTACGGTTTCTGATGAGTTCTATTGTCCTAAATGTGTAAACAGTTCATGGTTTTCGCGTGCTCTGACTCACGAGTCTGCCCATCCCATGTCCTCAACTTCCAACCTGGTGAGGCATTCATGGTTCGTAACATCGCCAACATGGTCCCTGCTTATGACAAGGTCAGTTACAAATCGATCAACTAGTCGATTATTTCGCTCTGGAATTGTGTTTTTTAAAAATAAAGATGGAATTGAATTTTTACAGGTCAGGTACTCTGGAGTAGGAGCAGCCATTGAATACGCCGTTCTTCATCTTAAGGTGGAGAACATCGTTGTCATTGGCCACAGTGCTTGTGGAGGTATCAAAGGTCTCATGTCACTACCTGAAGATGGTAGTGAATCAACGTACGTCACTCTATAAATCTATTCATTCAAAACACTTATCCTTAACAGATGATTGATTAATAATCTAATATACGCAGTGCCTTTATTGAGGATTGGGTA</genome_strand>
        <mrna_strand>AGCTCTATTATTACTAGTTAGTAACAAAGTAGTATAAAGGGCAAGCAAAAGCTAAAGGAAGCTCATTGAGAAATGTCAACTGCTTCCATTAACAATTGCCTTACTCTCTCCCCTGCTCAAGCTTCCCTTAAGAAACCTACTCGTCCCGTTGCCTTCGCAAGGCTTGGCAACTCTTCTTCTTCTTCTTCTATTCCAAGTCTCATCAGAAACGAGCCCGTCTTTGCTGCCCCTACTCCCATCATCAACCCCATTGTG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGAGAAGAAATGGCAAAAGAATCCTACGATCAAGCCATTGCTGCACTCGAGAAACTCCTCAG....................................................................................................................................................................................................................................................................................................................................................................................CGAGAAAGCAGAACTTGGACCAGTTGCTGCAGCAAGAGTTGACCAGATCACTGCTGAATTGAAATCAGCAGACGGCGGCAAGGCATTCGACCCTGTTGAGCACATGAAAGCTGGCTTTATTCATTTCAAGACTGAGAAATATGA..................................................................................................CACAAACCCAGCCTTATATGGTGAGCTAGCAAAGGGCCAGAGCCCTAAG....................................................................................TTCATGGTTTTCGCGTGCTCTGACTCACGAGTCTGCCCATCCCATGTCCTCAACTTCCAACCTGGTGAGGCATTCATGGTTCGTAACATCGCCAACATGGTCCCTGCTTATGACAAG.....................................................................................GTCAGGTACTCTGGAGTAGGAGCAGCCATTGAATACGCCGTTCTTCATCTTAAGGTGGAGAACATCGTTGTCATTGGCCACAGTGCTTGTGGAGGTATCAAAGGTCTCATGTCACTACCTGAAGATGGTAGTGAATCAAC.............................................................................TGCCTTTATTGAGGATTGGGTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0236E02-u8qcS/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E728192" ref_strand="+" ref_description="SGN-E728192 [LA17AA07]">
      <seq>gctatactattactagttagtaacaaagtagtataaagggcaagcaaaagctaaaggaagctcattgagaaatgtcaactgcttccattaacaattgccttactctctcccctgctcaagcttcccttaagaaacctactcgtcccgttgccttcgcaaggcttggcaactcttcttcttcttcttctattccaagtctcatcagaaacgagcccgtctttgctgcccctactcccatcatcaaccccattgtgagagaagaaatggcaaaagaatcctacgatcaagccattgctgcactcgagaaactcctcagcgagaaagcagaacttggaccagttgctgcagcaagagttgaccagatcactgctgaattgaaatcagcagacggcggcaaggcattcgaccctgttgagcacatgaaagctggctttattcatttcaagactgagaaatatgacacaaacccagccttatatggtgagctagcaaagggccagagccctaagttcatggttttcgcgtgctctgactcacgagtctgcccatcccatgtcctcaacttccaacctggtgaggcattcatggttcgtaacatcgccaacatggtccctgcttatgacaaggtcaggtactctggagtaggagcagccattgaatacgccgttcttcatcttaaggtggagaacatcgttgtcattggccacagtgcttgtggaggtatcaaaggtctcatgtcactacctgaagatggtagtgaaatcactgcctt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0236E02-u8qcS/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0236E02.1" temp_strand="+" temp_description="C02HBa0236E02.1  AC215430.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0236E02 sequenced_by:kribb upload_account_name:korea">
        <position start="14629" stop="17836"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="14929" g_stop="15182" g_length="254"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="254" r_length="254" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="15183" i_stop="16379" i_length="1197">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.971" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="16380" g_stop="16441" g_length="62"/>
          <reference_exon_boundary r_type="cDNA" r_start="255" r_stop="316" r_length="62" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="16442" i_stop="16813" i_length="372">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="16814" g_stop="16957" g_length="144"/>
          <reference_exon_boundary r_type="cDNA" r_start="317" r_stop="460" r_length="144" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="16958" i_stop="17055" i_length="98">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="17056" g_stop="17104" g_length="49"/>
          <reference_exon_boundary r_type="cDNA" r_start="461" r_stop="509" r_length="49" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="17105" i_stop="17188" i_length="84">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.961" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="17189" g_stop="17305" g_length="117"/>
          <reference_exon_boundary r_type="cDNA" r_start="510" r_stop="626" r_length="117" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="17306" i_stop="17390" i_length="85">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.979" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="17391" g_stop="17530" g_length="140"/>
          <reference_exon_boundary r_type="cDNA" r_start="627" r_stop="766" r_length="140" r_score="0.979"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="17531" i_stop="17607" i_length="77">
            <donor d_prob="0.999" d_score="0.94"/>
            <acceptor a_prob="0.948" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="17608" g_stop="17613" g_length="6"/>
          <reference_exon_boundary r_type="cDNA" r_start="767" r_stop="772" r_length="6" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0236E02.1" gen_strand="+" ref_id="SGN-E728192" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>772</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0236E02.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E728192" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="14929" e_stop="15182"/>
          <exon e_start="16380" e_stop="16441"/>
          <exon e_start="16814" e_stop="16957"/>
          <exon e_start="17056" e_stop="17104"/>
          <exon e_start="17189" e_stop="17305"/>
          <exon e_start="17391" e_stop="17530"/>
          <exon e_start="17608" e_stop="17613"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCTATACTATTACTAGTTAGTAACAAAGTAGTATAAAGGGCAAGCAAAAGCTAAAGGAAGCTCATTGAGAAATGTCAACTGCTTCCATTAACAATTGCCTTACTCTCTCCCCTGCTCAAGCTTCCCTTAAGAAACCTACTCGTCCCGTTGCCTTCGCAAGGCTTGGCAACTCTTCTTCTTCTTCTTCTATTCCAAGTCTCATCAGAAACGAGCCCGTCTTTGCTGCCCCTACTCCCATCATCAACCCCATTGTGGTACGAATTTTTAACTTACATCACTGTATTTTAATCTGTTATAACAAGTTATTTATATTTGACGTTACTTAATTTATTTTTTAAGCAAGACATTTTTTTTGTCTTATCGTATTTTTTGTAACGACTTGTGTCCATGCATGCTAGTTCACGTGAAAATTCAATATTGGCATAGTTCTAAACTTTAGTTTCTAACCACCTTTATTATTGGTATTGTTATTTTTGGCCATGAATCTCCTGAAGTTAGGTGAATTGATCATGTCGCTCTAAATTGTACACGTCTATTGCGTGTACTCAATGACATATAATATATTATTGCAATCCTAAAATAAGTGTTATTTTAATTTATTTTGAACTCATTAAAATAAATATGATATTTTACTGAGTTACTTATATTTATTACTTTGATTTTTTTGAGTACTAATTTGTATTTTGAAACTTTTAAGATGACGAGAGGGTGGAAATAACAAATTAAATTTGAAAATGAACCAAAATAGAGGTGGCAATTAGGTAGAGGTTCTCGCAAAATGAATATTAAATATGTAGGGCCGTATTGTGAATTATGTGGATAATGTTTTTGCTTTCTATTTTTTTTTAAAAAAAATAATTATTACTTACAATAATCCAACGGGTATCCTCGTATGTGCCCATCCTACAAGTGATAAAATGATAAGTACCAGTCTACCATCAAGTTTGTAGGATAGAAACTATTTAGTATACATTGTTTTTGTCTTAATTTCTAGTTTTGGTATCCATCTAAATCGATACTCCATTATGTTAATTATTTCATTTCTTTCTTTTGACATCTACATCACTTTTTAATGTGGTTACCACTTGCTATAATCATACTTCACTTAGCATTTTATTTGAACTTAGTGAAAGTGAAATTTTTCCTAATAATTGGTCTAAAAATTGAAGAAGATTAAAGCCAAGAAATTGAGTTCTTCCTTCTTTCTTCCAACTTTGAAAGTACCGATAGATACTATCATATAAAAAGAAGAGGTGGTCTGACTAACTCAATGAAGTGAATTTTTCAAAAACATGCTCAGAAAAATGAGAAAAATGGAGTTTTTGAAAAGAAAAATTAACAGATATTTAAAGATAAATTTTTGAAATTTGGTTCAAAATTTATGGTCAAATATTAACTTATATTTATATATATACCTCTTCTAAAATGCTAATGAGAATTAGAATTTGCAGAGAGAAGAAATGGCAAAAGAATCCTACGATCAAGCCATTGCTGCACTCGAGAAACTCCTCAGGTTTGTACTCTCTCTACGACTCTACCTTCTAAATCACACTACTTTTTTCTCGATCAAGTGGGGCCCAAAAAATATACATACACCCACACATACGTAGACAAAAAAAATGTTAAAATTTGCGAATATGCAGAGAAAACATAATATAATCATGCAATGTTTACTCGTAAAATTCAATTTCCCGGCAATGAACATGTTACTTGGTTTCGAGTTCTCCAGATCTGCATTAATTTTACCATTCTATCATCATTTTTTTACCCCATATCTGCATTAATTTATCATGGTAATGGTGCTCAAACCACAAATCTTTTTTTTTTCTACCTGAAATATTGCTTCAATAATAATAATGGTCTAAATTATTTTCTGCAATTACAGCGAGAAAGCAGAACTTGGACCAGTTGCTGCAGCAAGAGTTGACCAGATCACTGCTGAATTGAAATCAGCAGACGGCGGCAAGGCATTCGACCCTGTTGAGCACATGAAAGCTGGCTTTATTCATTTCAAGACTGAGAAATATGAGTAAGCAAATTCATTCAAATTAAAATTTCTGCATATTTGATGTTGTAACATTATTAGTGTCTGATAATTTTTCCTGTTTTCTATTTATGTACCAACAGCACAAACCCAGCCTTATATGGTGAGCTAGCAAAGGGCCAGAGCCCTAAGGTACAAATTCCTTGTTAATTTGTTGTCTAATTTTATGATTTGTACGGTTTCTGATGAGTTCTATTGTCCTAAATGTGTAAACAGTTCATGGTTTTCGCGTGCTCTGACTCACGAGTCTGCCCATCCCATGTCCTCAACTTCCAACCTGGTGAGGCATTCATGGTTCGTAACATCGCCAACATGGTCCCTGCTTATGACAAGGTCAGTTACAAATCGATCAACTAGTCGATTATTTCGCTCTGGAATTGTGTTTTTTAAAAATAAAGATGGAATTGAATTTTTACAGGTCAGGTACTCTGGAGTAGGAGCAGCCATTGAATACGCCGTTCTTCATCTTAAGGTGGAGAACATCGTTGTCATTGGCCACAGTGCTTGTGGAGGTATCAAAGGTCTCATGTCACTACCTGAAGATGGTAGTGAATCAACGTACGTCACTCTATAAATCTATTCATTCAAAACACTTATCCTTAACAGATGATTGATTAATAATCTAATATACGCAGTGCCTT</genome_strand>
        <mrna_strand>GCTATACTATTACTAGTTAGTAACAAAGTAGTATAAAGGGCAAGCAAAAGCTAAAGGAAGCTCATTGAGAAATGTCAACTGCTTCCATTAACAATTGCCTTACTCTCTCCCCTGCTCAAGCTTCCCTTAAGAAACCTACTCGTCCCGTTGCCTTCGCAAGGCTTGGCAACTCTTCTTCTTCTTCTTCTATTCCAAGTCTCATCAGAAACGAGCCCGTCTTTGCTGCCCCTACTCCCATCATCAACCCCATTGTG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGAGAAGAAATGGCAAAAGAATCCTACGATCAAGCCATTGCTGCACTCGAGAAACTCCTCAG....................................................................................................................................................................................................................................................................................................................................................................................CGAGAAAGCAGAACTTGGACCAGTTGCTGCAGCAAGAGTTGACCAGATCACTGCTGAATTGAAATCAGCAGACGGCGGCAAGGCATTCGACCCTGTTGAGCACATGAAAGCTGGCTTTATTCATTTCAAGACTGAGAAATATGA..................................................................................................CACAAACCCAGCCTTATATGGTGAGCTAGCAAAGGGCCAGAGCCCTAAG....................................................................................TTCATGGTTTTCGCGTGCTCTGACTCACGAGTCTGCCCATCCCATGTCCTCAACTTCCAACCTGGTGAGGCATTCATGGTTCGTAACATCGCCAACATGGTCCCTGCTTATGACAAG.....................................................................................GTCAGGTACTCTGGAGTAGGAGCAGCCATTGAATACGCCGTTCTTCATCTTAAGGTGGAGAACATCGTTGTCATTGGCCACAGTGCTTGTGGAGGTATCAAAGGTCTCATGTCACTACCTGAAGATGGTAGTGAAATCAC.............................................................................TGCCTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0236E02-u8qcS/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E295625" ref_strand="+" ref_description="SGN-E295625 [cLET-25-K21]">
      <seq>gctatactattactagttagagggaaagtagtataaagggcatgcaacacctaaaggaagctcattgagaaatgtcaactgcttccattaacaattgccttactctctcccctgctcaagcttcccttaagaaacctactcgtcccgttgccttcgcaaggcttggcaactcttcttcttcttcttctattccaaggctcatcataaacgagcccgtctttgctgcccctactcccatcatcaaccccattgtgagagaagaaatggcaaaagaatcctacgatcaagccattgctgcactcgagaaactcctcagcgagaaagcagaacttggaccagttgctgcagcaagagttgaccagatcactgctgaattgaaatcagcagacggcggcaaggcattccaccctgttgagcacatgaaagctggctttattcattttaagactgagaaatatga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0236E02-u8qcS/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0236E02.1" temp_strand="+" temp_description="C02HBa0236E02.1  AC215430.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0236E02 sequenced_by:kribb upload_account_name:korea">
        <position start="14629" stop="17257"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="14929" g_stop="15182" g_length="254"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="254" r_length="254" r_score="0.965"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="15183" i_stop="16379" i_length="1197">
            <donor d_prob="1.000" d_score="0.98"/>
            <acceptor a_prob="0.971" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="16380" g_stop="16441" g_length="62"/>
          <reference_exon_boundary r_type="cDNA" r_start="255" r_stop="316" r_length="62" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="16442" i_stop="16813" i_length="372">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="16814" g_stop="16957" g_length="144"/>
          <reference_exon_boundary r_type="cDNA" r_start="317" r_stop="460" r_length="144" r_score="0.986"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0236E02.1" gen_strand="+" ref_id="SGN-E295625" ref_strand="+">
        <total_alignment_score>0.976</total_alignment_score>
        <cumulative_length_of_scored_exons>460</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0236E02.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E295625" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="14929" e_stop="15182"/>
          <exon e_start="16380" e_stop="16441"/>
          <exon e_start="16814" e_stop="16957"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCTATACTATTACTAGTTAGTAACAAAGTAGTATAAAGGGCAAGCAAAAGCTAAAGGAAGCTCATTGAGAAATGTCAACTGCTTCCATTAACAATTGCCTTACTCTCTCCCCTGCTCAAGCTTCCCTTAAGAAACCTACTCGTCCCGTTGCCTTCGCAAGGCTTGGCAACTCTTCTTCTTCTTCTTCTATTCCAAGTCTCATCAGAAACGAGCCCGTCTTTGCTGCCCCTACTCCCATCATCAACCCCATTGTGGTACGAATTTTTAACTTACATCACTGTATTTTAATCTGTTATAACAAGTTATTTATATTTGACGTTACTTAATTTATTTTTTAAGCAAGACATTTTTTTTGTCTTATCGTATTTTTTGTAACGACTTGTGTCCATGCATGCTAGTTCACGTGAAAATTCAATATTGGCATAGTTCTAAACTTTAGTTTCTAACCACCTTTATTATTGGTATTGTTATTTTTGGCCATGAATCTCCTGAAGTTAGGTGAATTGATCATGTCGCTCTAAATTGTACACGTCTATTGCGTGTACTCAATGACATATAATATATTATTGCAATCCTAAAATAAGTGTTATTTTAATTTATTTTGAACTCATTAAAATAAATATGATATTTTACTGAGTTACTTATATTTATTACTTTGATTTTTTTGAGTACTAATTTGTATTTTGAAACTTTTAAGATGACGAGAGGGTGGAAATAACAAATTAAATTTGAAAATGAACCAAAATAGAGGTGGCAATTAGGTAGAGGTTCTCGCAAAATGAATATTAAATATGTAGGGCCGTATTGTGAATTATGTGGATAATGTTTTTGCTTTCTATTTTTTTTTAAAAAAAATAATTATTACTTACAATAATCCAACGGGTATCCTCGTATGTGCCCATCCTACAAGTGATAAAATGATAAGTACCAGTCTACCATCAAGTTTGTAGGATAGAAACTATTTAGTATACATTGTTTTTGTCTTAATTTCTAGTTTTGGTATCCATCTAAATCGATACTCCATTATGTTAATTATTTCATTTCTTTCTTTTGACATCTACATCACTTTTTAATGTGGTTACCACTTGCTATAATCATACTTCACTTAGCATTTTATTTGAACTTAGTGAAAGTGAAATTTTTCCTAATAATTGGTCTAAAAATTGAAGAAGATTAAAGCCAAGAAATTGAGTTCTTCCTTCTTTCTTCCAACTTTGAAAGTACCGATAGATACTATCATATAAAAAGAAGAGGTGGTCTGACTAACTCAATGAAGTGAATTTTTCAAAAACATGCTCAGAAAAATGAGAAAAATGGAGTTTTTGAAAAGAAAAATTAACAGATATTTAAAGATAAATTTTTGAAATTTGGTTCAAAATTTATGGTCAAATATTAACTTATATTTATATATATACCTCTTCTAAAATGCTAATGAGAATTAGAATTTGCAGAGAGAAGAAATGGCAAAAGAATCCTACGATCAAGCCATTGCTGCACTCGAGAAACTCCTCAGGTTTGTACTCTCTCTACGACTCTACCTTCTAAATCACACTACTTTTTTCTCGATCAAGTGGGGCCCAAAAAATATACATACACCCACACATACGTAGACAAAAAAAATGTTAAAATTTGCGAATATGCAGAGAAAACATAATATAATCATGCAATGTTTACTCGTAAAATTCAATTTCCCGGCAATGAACATGTTACTTGGTTTCGAGTTCTCCAGATCTGCATTAATTTTACCATTCTATCATCATTTTTTTACCCCATATCTGCATTAATTTATCATGGTAATGGTGCTCAAACCACAAATCTTTTTTTTTTCTACCTGAAATATTGCTTCAATAATAATAATGGTCTAAATTATTTTCTGCAATTACAGCGAGAAAGCAGAACTTGGACCAGTTGCTGCAGCAAGAGTTGACCAGATCACTGCTGAATTGAAATCAGCAGACGGCGGCAAGGCATTCGACCCTGTTGAGCACATGAAAGCTGGCTTTATTCATTTCAAGACTGAGAAATATGA</genome_strand>
        <mrna_strand>GCTATACTATTACTAGTTAGAGGGAAAGTAGTATAAAGGGCATGCAACACCTAAAGGAAGCTCATTGAGAAATGTCAACTGCTTCCATTAACAATTGCCTTACTCTCTCCCCTGCTCAAGCTTCCCTTAAGAAACCTACTCGTCCCGTTGCCTTCGCAAGGCTTGGCAACTCTTCTTCTTCTTCTTCTATTCCAAGGCTCATCATAAACGAGCCCGTCTTTGCTGCCCCTACTCCCATCATCAACCCCATTGTG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGAGAAGAAATGGCAAAAGAATCCTACGATCAAGCCATTGCTGCACTCGAGAAACTCCTCAG....................................................................................................................................................................................................................................................................................................................................................................................CGAGAAAGCAGAACTTGGACCAGTTGCTGCAGCAAGAGTTGACCAGATCACTGCTGAATTGAAATCAGCAGACGGCGGCAAGGCATTCCACCCTGTTGAGCACATGAAAGCTGGCTTTATTCATTTTAAGACTGAGAAATATGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0236E02-u8qcS/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E740437" ref_strand="+" ref_description="SGN-E740437 [LC21BG06]">
      <seq>ctatactattactagttagtaacaaagtagtataaagggcaagcaaaagctaaaggaagctcattgagaaatgtcaactgcttccattaacaattgccttactctctcccctgctcaagcttcccttaagaaacctactcgtcccgttgccttcgcaaggcttggcaactcttcttcttcttcttctattccaagtctcatcagaaacgagcccgtctttgctgcccctactcccatcatcaaccccattgtgagagaagaaatggcaaaagaatcctacgatcaagccattgctgcactcgagaaactcctcagcgagaaagcagaacttggaccagttgctgcagcaagagttgaccagatcactgctgaattgaaatcagcagacggcggcaaggcattcgaccctgttgagcacatgaaagctggctttattcatttcaagactgagaaatatgacacaaacccagccttatatggtgagctagcaaagggccagagccctaagttcatggttttcgcgtgctctgactcacgagtctgcccatcccatgtcctcaacttccaacctggtgaggcattcatggttcgtaacatcgccaacatggtccctgcttatgacaaggtcaggtactctggagtaggagcagccattgaatacgccgttcttcatcttaaggtggagaacatcgttgtcattggccacagtgcttgtggaggtatcaaaggtctcatgtcactacctgaagatggtagtgaatcaactgcctttattgaggattgggtaaaaatttgtttacctgccaaggcaaaggttctggccgatcacggagggaaagaatttgcacatcaatgcacag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0236E02-u8qcS/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0236E02.1" temp_strand="+" temp_description="C02HBa0236E02.1  AC215430.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0236E02 sequenced_by:kribb upload_account_name:korea">
        <position start="14630" stop="18002"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="14930" g_stop="15182" g_length="253"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="253" r_length="253" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="15183" i_stop="16379" i_length="1197">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.971" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="16380" g_stop="16441" g_length="62"/>
          <reference_exon_boundary r_type="cDNA" r_start="254" r_stop="315" r_length="62" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="16442" i_stop="16813" i_length="372">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="16814" g_stop="16957" g_length="144"/>
          <reference_exon_boundary r_type="cDNA" r_start="316" r_stop="459" r_length="144" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="16958" i_stop="17055" i_length="98">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="17056" g_stop="17104" g_length="49"/>
          <reference_exon_boundary r_type="cDNA" r_start="460" r_stop="508" r_length="49" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="17105" i_stop="17188" i_length="84">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.961" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="17189" g_stop="17305" g_length="117"/>
          <reference_exon_boundary r_type="cDNA" r_start="509" r_stop="625" r_length="117" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="17306" i_stop="17390" i_length="85">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.979" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="17391" g_stop="17530" g_length="140"/>
          <reference_exon_boundary r_type="cDNA" r_start="626" r_stop="765" r_length="140" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="17531" i_stop="17607" i_length="77">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.948" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="17608" g_stop="17702" g_length="95"/>
          <reference_exon_boundary r_type="cDNA" r_start="766" r_stop="860" r_length="95" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0236E02.1" gen_strand="+" ref_id="SGN-E740437" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>860</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0236E02.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E740437" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="14930" e_stop="15182"/>
          <exon e_start="16380" e_stop="16441"/>
          <exon e_start="16814" e_stop="16957"/>
          <exon e_start="17056" e_stop="17104"/>
          <exon e_start="17189" e_stop="17305"/>
          <exon e_start="17391" e_stop="17530"/>
          <exon e_start="17608" e_stop="17702"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTATACTATTACTAGTTAGTAACAAAGTAGTATAAAGGGCAAGCAAAAGCTAAAGGAAGCTCATTGAGAAATGTCAACTGCTTCCATTAACAATTGCCTTACTCTCTCCCCTGCTCAAGCTTCCCTTAAGAAACCTACTCGTCCCGTTGCCTTCGCAAGGCTTGGCAACTCTTCTTCTTCTTCTTCTATTCCAAGTCTCATCAGAAACGAGCCCGTCTTTGCTGCCCCTACTCCCATCATCAACCCCATTGTGGTACGAATTTTTAACTTACATCACTGTATTTTAATCTGTTATAACAAGTTATTTATATTTGACGTTACTTAATTTATTTTTTAAGCAAGACATTTTTTTTGTCTTATCGTATTTTTTGTAACGACTTGTGTCCATGCATGCTAGTTCACGTGAAAATTCAATATTGGCATAGTTCTAAACTTTAGTTTCTAACCACCTTTATTATTGGTATTGTTATTTTTGGCCATGAATCTCCTGAAGTTAGGTGAATTGATCATGTCGCTCTAAATTGTACACGTCTATTGCGTGTACTCAATGACATATAATATATTATTGCAATCCTAAAATAAGTGTTATTTTAATTTATTTTGAACTCATTAAAATAAATATGATATTTTACTGAGTTACTTATATTTATTACTTTGATTTTTTTGAGTACTAATTTGTATTTTGAAACTTTTAAGATGACGAGAGGGTGGAAATAACAAATTAAATTTGAAAATGAACCAAAATAGAGGTGGCAATTAGGTAGAGGTTCTCGCAAAATGAATATTAAATATGTAGGGCCGTATTGTGAATTATGTGGATAATGTTTTTGCTTTCTATTTTTTTTTAAAAAAAATAATTATTACTTACAATAATCCAACGGGTATCCTCGTATGTGCCCATCCTACAAGTGATAAAATGATAAGTACCAGTCTACCATCAAGTTTGTAGGATAGAAACTATTTAGTATACATTGTTTTTGTCTTAATTTCTAGTTTTGGTATCCATCTAAATCGATACTCCATTATGTTAATTATTTCATTTCTTTCTTTTGACATCTACATCACTTTTTAATGTGGTTACCACTTGCTATAATCATACTTCACTTAGCATTTTATTTGAACTTAGTGAAAGTGAAATTTTTCCTAATAATTGGTCTAAAAATTGAAGAAGATTAAAGCCAAGAAATTGAGTTCTTCCTTCTTTCTTCCAACTTTGAAAGTACCGATAGATACTATCATATAAAAAGAAGAGGTGGTCTGACTAACTCAATGAAGTGAATTTTTCAAAAACATGCTCAGAAAAATGAGAAAAATGGAGTTTTTGAAAAGAAAAATTAACAGATATTTAAAGATAAATTTTTGAAATTTGGTTCAAAATTTATGGTCAAATATTAACTTATATTTATATATATACCTCTTCTAAAATGCTAATGAGAATTAGAATTTGCAGAGAGAAGAAATGGCAAAAGAATCCTACGATCAAGCCATTGCTGCACTCGAGAAACTCCTCAGGTTTGTACTCTCTCTACGACTCTACCTTCTAAATCACACTACTTTTTTCTCGATCAAGTGGGGCCCAAAAAATATACATACACCCACACATACGTAGACAAAAAAAATGTTAAAATTTGCGAATATGCAGAGAAAACATAATATAATCATGCAATGTTTACTCGTAAAATTCAATTTCCCGGCAATGAACATGTTACTTGGTTTCGAGTTCTCCAGATCTGCATTAATTTTACCATTCTATCATCATTTTTTTACCCCATATCTGCATTAATTTATCATGGTAATGGTGCTCAAACCACAAATCTTTTTTTTTTCTACCTGAAATATTGCTTCAATAATAATAATGGTCTAAATTATTTTCTGCAATTACAGCGAGAAAGCAGAACTTGGACCAGTTGCTGCAGCAAGAGTTGACCAGATCACTGCTGAATTGAAATCAGCAGACGGCGGCAAGGCATTCGACCCTGTTGAGCACATGAAAGCTGGCTTTATTCATTTCAAGACTGAGAAATATGAGTAAGCAAATTCATTCAAATTAAAATTTCTGCATATTTGATGTTGTAACATTATTAGTGTCTGATAATTTTTCCTGTTTTCTATTTATGTACCAACAGCACAAACCCAGCCTTATATGGTGAGCTAGCAAAGGGCCAGAGCCCTAAGGTACAAATTCCTTGTTAATTTGTTGTCTAATTTTATGATTTGTACGGTTTCTGATGAGTTCTATTGTCCTAAATGTGTAAACAGTTCATGGTTTTCGCGTGCTCTGACTCACGAGTCTGCCCATCCCATGTCCTCAACTTCCAACCTGGTGAGGCATTCATGGTTCGTAACATCGCCAACATGGTCCCTGCTTATGACAAGGTCAGTTACAAATCGATCAACTAGTCGATTATTTCGCTCTGGAATTGTGTTTTTTAAAAATAAAGATGGAATTGAATTTTTACAGGTCAGGTACTCTGGAGTAGGAGCAGCCATTGAATACGCCGTTCTTCATCTTAAGGTGGAGAACATCGTTGTCATTGGCCACAGTGCTTGTGGAGGTATCAAAGGTCTCATGTCACTACCTGAAGATGGTAGTGAATCAACGTACGTCACTCTATAAATCTATTCATTCAAAACACTTATCCTTAACAGATGATTGATTAATAATCTAATATACGCAGTGCCTTTATTGAGGATTGGGTAAAAATTTGTTTACCTGCCAAGGCAAAGGTTCTGGCCGATCACGGAGGGAAAGAATTTGCACATCAATGCACAG</genome_strand>
        <mrna_strand>CTATACTATTACTAGTTAGTAACAAAGTAGTATAAAGGGCAAGCAAAAGCTAAAGGAAGCTCATTGAGAAATGTCAACTGCTTCCATTAACAATTGCCTTACTCTCTCCCCTGCTCAAGCTTCCCTTAAGAAACCTACTCGTCCCGTTGCCTTCGCAAGGCTTGGCAACTCTTCTTCTTCTTCTTCTATTCCAAGTCTCATCAGAAACGAGCCCGTCTTTGCTGCCCCTACTCCCATCATCAACCCCATTGTG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGAGAAGAAATGGCAAAAGAATCCTACGATCAAGCCATTGCTGCACTCGAGAAACTCCTCAG....................................................................................................................................................................................................................................................................................................................................................................................CGAGAAAGCAGAACTTGGACCAGTTGCTGCAGCAAGAGTTGACCAGATCACTGCTGAATTGAAATCAGCAGACGGCGGCAAGGCATTCGACCCTGTTGAGCACATGAAAGCTGGCTTTATTCATTTCAAGACTGAGAAATATGA..................................................................................................CACAAACCCAGCCTTATATGGTGAGCTAGCAAAGGGCCAGAGCCCTAAG....................................................................................TTCATGGTTTTCGCGTGCTCTGACTCACGAGTCTGCCCATCCCATGTCCTCAACTTCCAACCTGGTGAGGCATTCATGGTTCGTAACATCGCCAACATGGTCCCTGCTTATGACAAG.....................................................................................GTCAGGTACTCTGGAGTAGGAGCAGCCATTGAATACGCCGTTCTTCATCTTAAGGTGGAGAACATCGTTGTCATTGGCCACAGTGCTTGTGGAGGTATCAAAGGTCTCATGTCACTACCTGAAGATGGTAGTGAATCAAC.............................................................................TGCCTTTATTGAGGATTGGGTAAAAATTTGTTTACCTGCCAAGGCAAAGGTTCTGGCCGATCACGGAGGGAAAGAATTTGCACATCAATGCACAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0236E02-u8qcS/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E731133" ref_strand="+" ref_description="SGN-E731133 [LA26BA03]">
      <seq>ctatactattactagttagtaacaaagtagtataaagggcaagcaaaagctaaaggaagctcattgagaaatgtcaactgcttccattaacaattgccttactctctcccctgctcaagcttcccttaagaaacctactcgtcccgttgccttcgcaaggcttggcaactcttcttcttcttcttctattccaagtctcatcagaaacgagcccgtctttgctgcccctactcccatcatcaaccccattgtgagagaagaaatggcaaaagaatcctacgatcaagccattgctgcactcgagaaactcctcagcgagaaagcagaacttggaccagttgctgcagcaagagttgaccagatcactgctgaattgaaatcagcagacggcggcaaggcattcgaccctgttgagcacatgaaagctggctttattcatttcaagactgagaaatatgacacaaacccagccttatatggtgagctagcaaagggccagagccctaagttcatggttttcgcgtgctctgactcacgagtctgcccatcccatgtcctcaacttccaacctggtgaggcattcatggttcgtaacatcgccaacatggtccctgcttatgacaaggtcaggtactctggagtaggagcagccattgaatacgccgttcttcatcttaaggtggagaacatcgttgtcattggccacagtgcttgtggaggtatcaaaggtctcatgtcactacctgaagatggtagtgaaatcactgcctttattgagga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0236E02-u8qcS/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0236E02.1" temp_strand="+" temp_description="C02HBa0236E02.1  AC215430.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0236E02 sequenced_by:kribb upload_account_name:korea">
        <position start="14630" stop="17836"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="14930" g_stop="15182" g_length="253"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="253" r_length="253" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="15183" i_stop="16379" i_length="1197">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.971" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="16380" g_stop="16441" g_length="62"/>
          <reference_exon_boundary r_type="cDNA" r_start="254" r_stop="315" r_length="62" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="16442" i_stop="16813" i_length="372">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="16814" g_stop="16957" g_length="144"/>
          <reference_exon_boundary r_type="cDNA" r_start="316" r_stop="459" r_length="144" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="16958" i_stop="17055" i_length="98">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="17056" g_stop="17104" g_length="49"/>
          <reference_exon_boundary r_type="cDNA" r_start="460" r_stop="508" r_length="49" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="17105" i_stop="17188" i_length="84">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.961" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="17189" g_stop="17305" g_length="117"/>
          <reference_exon_boundary r_type="cDNA" r_start="509" r_stop="625" r_length="117" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="17306" i_stop="17390" i_length="85">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.979" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="17391" g_stop="17530" g_length="140"/>
          <reference_exon_boundary r_type="cDNA" r_start="626" r_stop="765" r_length="140" r_score="0.979"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="17531" i_stop="17607" i_length="77">
            <donor d_prob="0.999" d_score="0.94"/>
            <acceptor a_prob="0.948" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="17608" g_stop="17622" g_length="15"/>
          <reference_exon_boundary r_type="cDNA" r_start="766" r_stop="780" r_length="15" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0236E02.1" gen_strand="+" ref_id="SGN-E731133" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>780</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0236E02.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E731133" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="14930" e_stop="15182"/>
          <exon e_start="16380" e_stop="16441"/>
          <exon e_start="16814" e_stop="16957"/>
          <exon e_start="17056" e_stop="17104"/>
          <exon e_start="17189" e_stop="17305"/>
          <exon e_start="17391" e_stop="17530"/>
          <exon e_start="17608" e_stop="17622"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTATACTATTACTAGTTAGTAACAAAGTAGTATAAAGGGCAAGCAAAAGCTAAAGGAAGCTCATTGAGAAATGTCAACTGCTTCCATTAACAATTGCCTTACTCTCTCCCCTGCTCAAGCTTCCCTTAAGAAACCTACTCGTCCCGTTGCCTTCGCAAGGCTTGGCAACTCTTCTTCTTCTTCTTCTATTCCAAGTCTCATCAGAAACGAGCCCGTCTTTGCTGCCCCTACTCCCATCATCAACCCCATTGTGGTACGAATTTTTAACTTACATCACTGTATTTTAATCTGTTATAACAAGTTATTTATATTTGACGTTACTTAATTTATTTTTTAAGCAAGACATTTTTTTTGTCTTATCGTATTTTTTGTAACGACTTGTGTCCATGCATGCTAGTTCACGTGAAAATTCAATATTGGCATAGTTCTAAACTTTAGTTTCTAACCACCTTTATTATTGGTATTGTTATTTTTGGCCATGAATCTCCTGAAGTTAGGTGAATTGATCATGTCGCTCTAAATTGTACACGTCTATTGCGTGTACTCAATGACATATAATATATTATTGCAATCCTAAAATAAGTGTTATTTTAATTTATTTTGAACTCATTAAAATAAATATGATATTTTACTGAGTTACTTATATTTATTACTTTGATTTTTTTGAGTACTAATTTGTATTTTGAAACTTTTAAGATGACGAGAGGGTGGAAATAACAAATTAAATTTGAAAATGAACCAAAATAGAGGTGGCAATTAGGTAGAGGTTCTCGCAAAATGAATATTAAATATGTAGGGCCGTATTGTGAATTATGTGGATAATGTTTTTGCTTTCTATTTTTTTTTAAAAAAAATAATTATTACTTACAATAATCCAACGGGTATCCTCGTATGTGCCCATCCTACAAGTGATAAAATGATAAGTACCAGTCTACCATCAAGTTTGTAGGATAGAAACTATTTAGTATACATTGTTTTTGTCTTAATTTCTAGTTTTGGTATCCATCTAAATCGATACTCCATTATGTTAATTATTTCATTTCTTTCTTTTGACATCTACATCACTTTTTAATGTGGTTACCACTTGCTATAATCATACTTCACTTAGCATTTTATTTGAACTTAGTGAAAGTGAAATTTTTCCTAATAATTGGTCTAAAAATTGAAGAAGATTAAAGCCAAGAAATTGAGTTCTTCCTTCTTTCTTCCAACTTTGAAAGTACCGATAGATACTATCATATAAAAAGAAGAGGTGGTCTGACTAACTCAATGAAGTGAATTTTTCAAAAACATGCTCAGAAAAATGAGAAAAATGGAGTTTTTGAAAAGAAAAATTAACAGATATTTAAAGATAAATTTTTGAAATTTGGTTCAAAATTTATGGTCAAATATTAACTTATATTTATATATATACCTCTTCTAAAATGCTAATGAGAATTAGAATTTGCAGAGAGAAGAAATGGCAAAAGAATCCTACGATCAAGCCATTGCTGCACTCGAGAAACTCCTCAGGTTTGTACTCTCTCTACGACTCTACCTTCTAAATCACACTACTTTTTTCTCGATCAAGTGGGGCCCAAAAAATATACATACACCCACACATACGTAGACAAAAAAAATGTTAAAATTTGCGAATATGCAGAGAAAACATAATATAATCATGCAATGTTTACTCGTAAAATTCAATTTCCCGGCAATGAACATGTTACTTGGTTTCGAGTTCTCCAGATCTGCATTAATTTTACCATTCTATCATCATTTTTTTACCCCATATCTGCATTAATTTATCATGGTAATGGTGCTCAAACCACAAATCTTTTTTTTTTCTACCTGAAATATTGCTTCAATAATAATAATGGTCTAAATTATTTTCTGCAATTACAGCGAGAAAGCAGAACTTGGACCAGTTGCTGCAGCAAGAGTTGACCAGATCACTGCTGAATTGAAATCAGCAGACGGCGGCAAGGCATTCGACCCTGTTGAGCACATGAAAGCTGGCTTTATTCATTTCAAGACTGAGAAATATGAGTAAGCAAATTCATTCAAATTAAAATTTCTGCATATTTGATGTTGTAACATTATTAGTGTCTGATAATTTTTCCTGTTTTCTATTTATGTACCAACAGCACAAACCCAGCCTTATATGGTGAGCTAGCAAAGGGCCAGAGCCCTAAGGTACAAATTCCTTGTTAATTTGTTGTCTAATTTTATGATTTGTACGGTTTCTGATGAGTTCTATTGTCCTAAATGTGTAAACAGTTCATGGTTTTCGCGTGCTCTGACTCACGAGTCTGCCCATCCCATGTCCTCAACTTCCAACCTGGTGAGGCATTCATGGTTCGTAACATCGCCAACATGGTCCCTGCTTATGACAAGGTCAGTTACAAATCGATCAACTAGTCGATTATTTCGCTCTGGAATTGTGTTTTTTAAAAATAAAGATGGAATTGAATTTTTACAGGTCAGGTACTCTGGAGTAGGAGCAGCCATTGAATACGCCGTTCTTCATCTTAAGGTGGAGAACATCGTTGTCATTGGCCACAGTGCTTGTGGAGGTATCAAAGGTCTCATGTCACTACCTGAAGATGGTAGTGAATCAACGTACGTCACTCTATAAATCTATTCATTCAAAACACTTATCCTTAACAGATGATTGATTAATAATCTAATATACGCAGTGCCTTTATTGAGGA</genome_strand>
        <mrna_strand>CTATACTATTACTAGTTAGTAACAAAGTAGTATAAAGGGCAAGCAAAAGCTAAAGGAAGCTCATTGAGAAATGTCAACTGCTTCCATTAACAATTGCCTTACTCTCTCCCCTGCTCAAGCTTCCCTTAAGAAACCTACTCGTCCCGTTGCCTTCGCAAGGCTTGGCAACTCTTCTTCTTCTTCTTCTATTCCAAGTCTCATCAGAAACGAGCCCGTCTTTGCTGCCCCTACTCCCATCATCAACCCCATTGTG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGAGAAGAAATGGCAAAAGAATCCTACGATCAAGCCATTGCTGCACTCGAGAAACTCCTCAG....................................................................................................................................................................................................................................................................................................................................................................................CGAGAAAGCAGAACTTGGACCAGTTGCTGCAGCAAGAGTTGACCAGATCACTGCTGAATTGAAATCAGCAGACGGCGGCAAGGCATTCGACCCTGTTGAGCACATGAAAGCTGGCTTTATTCATTTCAAGACTGAGAAATATGA..................................................................................................CACAAACCCAGCCTTATATGGTGAGCTAGCAAAGGGCCAGAGCCCTAAG....................................................................................TTCATGGTTTTCGCGTGCTCTGACTCACGAGTCTGCCCATCCCATGTCCTCAACTTCCAACCTGGTGAGGCATTCATGGTTCGTAACATCGCCAACATGGTCCCTGCTTATGACAAG.....................................................................................GTCAGGTACTCTGGAGTAGGAGCAGCCATTGAATACGCCGTTCTTCATCTTAAGGTGGAGAACATCGTTGTCATTGGCCACAGTGCTTGTGGAGGTATCAAAGGTCTCATGTCACTACCTGAAGATGGTAGTGAAATCAC.............................................................................TGCCTTTATTGAGGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0236E02-u8qcS/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E740554" ref_strand="+" ref_description="SGN-E740554 [LC21DG06]">
      <seq>ctatactattactagttagtaacaaagtagtataaagggcaagcaaaagctaaaggaagctcattgagaaatgtcaactgcttccattaacaattgccttactctctcccctgctcaagcttcccttaagaaacctactcgtcccgttgccttcgcaaggcttggcaactcttcttcttcttcttctattccaagtctcatcagaaacgagcccgtctttgctgcccctactcccatcatcaaccccattgtgagagaagaaatggcaaaagaatcctacgatcaagccattgctgcactcgagaaactcctcagcgagaaagcagaacttggaccagttgctgcagcaagagttgaccagatcactgctgaattgaaatcagcagacggcggcaaggcattcgaccctgttgagcacatgaaagctggctttattcatttcaagactgagaaatatgacacaaacccagccttatatggtgagctagcaaagggccagagccctaagttcatggttttcgcgtgctctgactcacgagtctgcccatcccatgtcctcaacttccaacctggtgaggcattcatggttcgtaacatcgccaacatggtccctgcttatgacaaggtcaggtactctggagtaggagcagccattgaatacgccgttcttcatcttaaggtggagaacatcgttgtcattggccacagtgcttgtggaggtatcaaaggtctcatgtcactacctgaagatg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0236E02-u8qcS/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0236E02.1" temp_strand="+" temp_description="C02HBa0236E02.1  AC215430.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0236E02 sequenced_by:kribb upload_account_name:korea">
        <position start="14630" stop="17817"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="14930" g_stop="15182" g_length="253"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="253" r_length="253" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="15183" i_stop="16379" i_length="1197">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.971" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="16380" g_stop="16441" g_length="62"/>
          <reference_exon_boundary r_type="cDNA" r_start="254" r_stop="315" r_length="62" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="16442" i_stop="16813" i_length="372">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="16814" g_stop="16957" g_length="144"/>
          <reference_exon_boundary r_type="cDNA" r_start="316" r_stop="459" r_length="144" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="16958" i_stop="17055" i_length="98">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="17056" g_stop="17104" g_length="49"/>
          <reference_exon_boundary r_type="cDNA" r_start="460" r_stop="508" r_length="49" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="17105" i_stop="17188" i_length="84">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.961" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="17189" g_stop="17305" g_length="117"/>
          <reference_exon_boundary r_type="cDNA" r_start="509" r_stop="625" r_length="117" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="17306" i_stop="17390" i_length="85">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.979" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="17391" g_stop="17517" g_length="127"/>
          <reference_exon_boundary r_type="cDNA" r_start="626" r_stop="752" r_length="127" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0236E02.1" gen_strand="+" ref_id="SGN-E740554" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>752</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0236E02.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E740554" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="14930" e_stop="15182"/>
          <exon e_start="16380" e_stop="16441"/>
          <exon e_start="16814" e_stop="16957"/>
          <exon e_start="17056" e_stop="17104"/>
          <exon e_start="17189" e_stop="17305"/>
          <exon e_start="17391" e_stop="17517"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTATACTATTACTAGTTAGTAACAAAGTAGTATAAAGGGCAAGCAAAAGCTAAAGGAAGCTCATTGAGAAATGTCAACTGCTTCCATTAACAATTGCCTTACTCTCTCCCCTGCTCAAGCTTCCCTTAAGAAACCTACTCGTCCCGTTGCCTTCGCAAGGCTTGGCAACTCTTCTTCTTCTTCTTCTATTCCAAGTCTCATCAGAAACGAGCCCGTCTTTGCTGCCCCTACTCCCATCATCAACCCCATTGTGGTACGAATTTTTAACTTACATCACTGTATTTTAATCTGTTATAACAAGTTATTTATATTTGACGTTACTTAATTTATTTTTTAAGCAAGACATTTTTTTTGTCTTATCGTATTTTTTGTAACGACTTGTGTCCATGCATGCTAGTTCACGTGAAAATTCAATATTGGCATAGTTCTAAACTTTAGTTTCTAACCACCTTTATTATTGGTATTGTTATTTTTGGCCATGAATCTCCTGAAGTTAGGTGAATTGATCATGTCGCTCTAAATTGTACACGTCTATTGCGTGTACTCAATGACATATAATATATTATTGCAATCCTAAAATAAGTGTTATTTTAATTTATTTTGAACTCATTAAAATAAATATGATATTTTACTGAGTTACTTATATTTATTACTTTGATTTTTTTGAGTACTAATTTGTATTTTGAAACTTTTAAGATGACGAGAGGGTGGAAATAACAAATTAAATTTGAAAATGAACCAAAATAGAGGTGGCAATTAGGTAGAGGTTCTCGCAAAATGAATATTAAATATGTAGGGCCGTATTGTGAATTATGTGGATAATGTTTTTGCTTTCTATTTTTTTTTAAAAAAAATAATTATTACTTACAATAATCCAACGGGTATCCTCGTATGTGCCCATCCTACAAGTGATAAAATGATAAGTACCAGTCTACCATCAAGTTTGTAGGATAGAAACTATTTAGTATACATTGTTTTTGTCTTAATTTCTAGTTTTGGTATCCATCTAAATCGATACTCCATTATGTTAATTATTTCATTTCTTTCTTTTGACATCTACATCACTTTTTAATGTGGTTACCACTTGCTATAATCATACTTCACTTAGCATTTTATTTGAACTTAGTGAAAGTGAAATTTTTCCTAATAATTGGTCTAAAAATTGAAGAAGATTAAAGCCAAGAAATTGAGTTCTTCCTTCTTTCTTCCAACTTTGAAAGTACCGATAGATACTATCATATAAAAAGAAGAGGTGGTCTGACTAACTCAATGAAGTGAATTTTTCAAAAACATGCTCAGAAAAATGAGAAAAATGGAGTTTTTGAAAAGAAAAATTAACAGATATTTAAAGATAAATTTTTGAAATTTGGTTCAAAATTTATGGTCAAATATTAACTTATATTTATATATATACCTCTTCTAAAATGCTAATGAGAATTAGAATTTGCAGAGAGAAGAAATGGCAAAAGAATCCTACGATCAAGCCATTGCTGCACTCGAGAAACTCCTCAGGTTTGTACTCTCTCTACGACTCTACCTTCTAAATCACACTACTTTTTTCTCGATCAAGTGGGGCCCAAAAAATATACATACACCCACACATACGTAGACAAAAAAAATGTTAAAATTTGCGAATATGCAGAGAAAACATAATATAATCATGCAATGTTTACTCGTAAAATTCAATTTCCCGGCAATGAACATGTTACTTGGTTTCGAGTTCTCCAGATCTGCATTAATTTTACCATTCTATCATCATTTTTTTACCCCATATCTGCATTAATTTATCATGGTAATGGTGCTCAAACCACAAATCTTTTTTTTTTCTACCTGAAATATTGCTTCAATAATAATAATGGTCTAAATTATTTTCTGCAATTACAGCGAGAAAGCAGAACTTGGACCAGTTGCTGCAGCAAGAGTTGACCAGATCACTGCTGAATTGAAATCAGCAGACGGCGGCAAGGCATTCGACCCTGTTGAGCACATGAAAGCTGGCTTTATTCATTTCAAGACTGAGAAATATGAGTAAGCAAATTCATTCAAATTAAAATTTCTGCATATTTGATGTTGTAACATTATTAGTGTCTGATAATTTTTCCTGTTTTCTATTTATGTACCAACAGCACAAACCCAGCCTTATATGGTGAGCTAGCAAAGGGCCAGAGCCCTAAGGTACAAATTCCTTGTTAATTTGTTGTCTAATTTTATGATTTGTACGGTTTCTGATGAGTTCTATTGTCCTAAATGTGTAAACAGTTCATGGTTTTCGCGTGCTCTGACTCACGAGTCTGCCCATCCCATGTCCTCAACTTCCAACCTGGTGAGGCATTCATGGTTCGTAACATCGCCAACATGGTCCCTGCTTATGACAAGGTCAGTTACAAATCGATCAACTAGTCGATTATTTCGCTCTGGAATTGTGTTTTTTAAAAATAAAGATGGAATTGAATTTTTACAGGTCAGGTACTCTGGAGTAGGAGCAGCCATTGAATACGCCGTTCTTCATCTTAAGGTGGAGAACATCGTTGTCATTGGCCACAGTGCTTGTGGAGGTATCAAAGGTCTCATGTCACTACCTGAAGATG</genome_strand>
        <mrna_strand>CTATACTATTACTAGTTAGTAACAAAGTAGTATAAAGGGCAAGCAAAAGCTAAAGGAAGCTCATTGAGAAATGTCAACTGCTTCCATTAACAATTGCCTTACTCTCTCCCCTGCTCAAGCTTCCCTTAAGAAACCTACTCGTCCCGTTGCCTTCGCAAGGCTTGGCAACTCTTCTTCTTCTTCTTCTATTCCAAGTCTCATCAGAAACGAGCCCGTCTTTGCTGCCCCTACTCCCATCATCAACCCCATTGTG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGAGAAGAAATGGCAAAAGAATCCTACGATCAAGCCATTGCTGCACTCGAGAAACTCCTCAG....................................................................................................................................................................................................................................................................................................................................................................................CGAGAAAGCAGAACTTGGACCAGTTGCTGCAGCAAGAGTTGACCAGATCACTGCTGAATTGAAATCAGCAGACGGCGGCAAGGCATTCGACCCTGTTGAGCACATGAAAGCTGGCTTTATTCATTTCAAGACTGAGAAATATGA..................................................................................................CACAAACCCAGCCTTATATGGTGAGCTAGCAAAGGGCCAGAGCCCTAAG....................................................................................TTCATGGTTTTCGCGTGCTCTGACTCACGAGTCTGCCCATCCCATGTCCTCAACTTCCAACCTGGTGAGGCATTCATGGTTCGTAACATCGCCAACATGGTCCCTGCTTATGACAAG.....................................................................................GTCAGGTACTCTGGAGTAGGAGCAGCCATTGAATACGCCGTTCTTCATCTTAAGGTGGAGAACATCGTTGTCATTGGCCACAGTGCTTGTGGAGGTATCAAAGGTCTCATGTCACTACCTGAAGATG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0236E02-u8qcS/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E726334" ref_strand="+" ref_description="SGN-E726334 [LA11CB03]">
      <seq>ctatactattactagttagtaacaaagtagtataaagggcaagcaaaagctaaaggaagctcattgagaaatgtcaactgcttccattaacaattgccttactctctcccctgctcaagcttcccttaagaaacctactcgtcccgttgccttcgcaaggcttggcaactcttcttcttcttcttctattccaagtctcatcagaaacgagcccgtctttgctgcccctactcccatcatcaaccccattgtgagagaagaaatggcaaaagaatcctacgatcaagccattgctgcactcgagaaactcctc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0236E02-u8qcS/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0236E02.1" temp_strand="+" temp_description="C02HBa0236E02.1  AC215430.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0236E02 sequenced_by:kribb upload_account_name:korea">
        <position start="14630" stop="16739"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="14930" g_stop="15182" g_length="253"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="253" r_length="253" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="15183" i_stop="16379" i_length="1197">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.971" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="16380" g_stop="16439" g_length="60"/>
          <reference_exon_boundary r_type="cDNA" r_start="254" r_stop="313" r_length="60" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0236E02.1" gen_strand="+" ref_id="SGN-E726334" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>313</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0236E02.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E726334" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="14930" e_stop="15182"/>
          <exon e_start="16380" e_stop="16439"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTATACTATTACTAGTTAGTAACAAAGTAGTATAAAGGGCAAGCAAAAGCTAAAGGAAGCTCATTGAGAAATGTCAACTGCTTCCATTAACAATTGCCTTACTCTCTCCCCTGCTCAAGCTTCCCTTAAGAAACCTACTCGTCCCGTTGCCTTCGCAAGGCTTGGCAACTCTTCTTCTTCTTCTTCTATTCCAAGTCTCATCAGAAACGAGCCCGTCTTTGCTGCCCCTACTCCCATCATCAACCCCATTGTGGTACGAATTTTTAACTTACATCACTGTATTTTAATCTGTTATAACAAGTTATTTATATTTGACGTTACTTAATTTATTTTTTAAGCAAGACATTTTTTTTGTCTTATCGTATTTTTTGTAACGACTTGTGTCCATGCATGCTAGTTCACGTGAAAATTCAATATTGGCATAGTTCTAAACTTTAGTTTCTAACCACCTTTATTATTGGTATTGTTATTTTTGGCCATGAATCTCCTGAAGTTAGGTGAATTGATCATGTCGCTCTAAATTGTACACGTCTATTGCGTGTACTCAATGACATATAATATATTATTGCAATCCTAAAATAAGTGTTATTTTAATTTATTTTGAACTCATTAAAATAAATATGATATTTTACTGAGTTACTTATATTTATTACTTTGATTTTTTTGAGTACTAATTTGTATTTTGAAACTTTTAAGATGACGAGAGGGTGGAAATAACAAATTAAATTTGAAAATGAACCAAAATAGAGGTGGCAATTAGGTAGAGGTTCTCGCAAAATGAATATTAAATATGTAGGGCCGTATTGTGAATTATGTGGATAATGTTTTTGCTTTCTATTTTTTTTTAAAAAAAATAATTATTACTTACAATAATCCAACGGGTATCCTCGTATGTGCCCATCCTACAAGTGATAAAATGATAAGTACCAGTCTACCATCAAGTTTGTAGGATAGAAACTATTTAGTATACATTGTTTTTGTCTTAATTTCTAGTTTTGGTATCCATCTAAATCGATACTCCATTATGTTAATTATTTCATTTCTTTCTTTTGACATCTACATCACTTTTTAATGTGGTTACCACTTGCTATAATCATACTTCACTTAGCATTTTATTTGAACTTAGTGAAAGTGAAATTTTTCCTAATAATTGGTCTAAAAATTGAAGAAGATTAAAGCCAAGAAATTGAGTTCTTCCTTCTTTCTTCCAACTTTGAAAGTACCGATAGATACTATCATATAAAAAGAAGAGGTGGTCTGACTAACTCAATGAAGTGAATTTTTCAAAAACATGCTCAGAAAAATGAGAAAAATGGAGTTTTTGAAAAGAAAAATTAACAGATATTTAAAGATAAATTTTTGAAATTTGGTTCAAAATTTATGGTCAAATATTAACTTATATTTATATATATACCTCTTCTAAAATGCTAATGAGAATTAGAATTTGCAGAGAGAAGAAATGGCAAAAGAATCCTACGATCAAGCCATTGCTGCACTCGAGAAACTCCTC</genome_strand>
        <mrna_strand>CTATACTATTACTAGTTAGTAACAAAGTAGTATAAAGGGCAAGCAAAAGCTAAAGGAAGCTCATTGAGAAATGTCAACTGCTTCCATTAACAATTGCCTTACTCTCTCCCCTGCTCAAGCTTCCCTTAAGAAACCTACTCGTCCCGTTGCCTTCGCAAGGCTTGGCAACTCTTCTTCTTCTTCTTCTATTCCAAGTCTCATCAGAAACGAGCCCGTCTTTGCTGCCCCTACTCCCATCATCAACCCCATTGTG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGAGAAGAAATGGCAAAAGAATCCTACGATCAAGCCATTGCTGCACTCGAGAAACTCCTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0236E02-u8qcS/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E355919" ref_strand="+" ref_description="SGN-E355919 [cLHT-12-N24]">
      <seq>tatactattactagttagtaacaaagtagtataaagggcaagcaaaagctaaaggaagctcattgagaaatgtcaactgcttccattaacaattgcctcactctctcccctgctcaagcttcccttaagaaacctactcgtcccgttgccttcgcaaggcttggcaactcttcttcttcttcttcttctattccaagtctcatcagaaacgagcccgtctttgctgcccctactcccatcatcaaccccattgtgagagaagaaatggcaaaagaatcctacgatcaggccattgctgcactcgagaaactcctcagcgagaaagcagaacttggaccagttgctgcagcaagagttgatcagatcactgctgaattgaaatcagcagatggcggcaaggcattcgaccctgttgagcacatgaaagctggctttattcatttcaagactgagaaatatgatacaaacccagccttatatggtgaactagcaaagggccagagccctaagttcatggttntcgcgtgctctgactcacgagtgtgcccatcccatgt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0236E02-u8qcS/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0236E02.1" temp_strand="+" temp_description="C02HBa0236E02.1  AC215430.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0236E02 sequenced_by:kribb upload_account_name:korea">
        <position start="14631" stop="17535"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="14931" g_stop="15182" g_length="252"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="255" r_length="255" r_score="0.972"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="15183" i_stop="16379" i_length="1197">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.971" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="16380" g_stop="16441" g_length="62"/>
          <reference_exon_boundary r_type="cDNA" r_start="256" r_stop="317" r_length="62" r_score="0.984"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="16442" i_stop="16813" i_length="372">
            <donor d_prob="0.999" d_score="0.98"/>
            <acceptor a_prob="1.000" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="16814" g_stop="16957" g_length="144"/>
          <reference_exon_boundary r_type="cDNA" r_start="318" r_stop="461" r_length="144" r_score="0.986"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="16958" i_stop="17055" i_length="98">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="17056" g_stop="17104" g_length="49"/>
          <reference_exon_boundary r_type="cDNA" r_start="462" r_stop="510" r_length="49" r_score="0.959"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="17105" i_stop="17188" i_length="84">
            <donor d_prob="1.000" d_score="0.96"/>
            <acceptor a_prob="0.961" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="17189" g_stop="17235" g_length="47"/>
          <reference_exon_boundary r_type="cDNA" r_start="511" r_stop="557" r_length="47" r_score="0.957"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0236E02.1" gen_strand="+" ref_id="SGN-E355919" ref_strand="+">
        <total_alignment_score>0.978</total_alignment_score>
        <cumulative_length_of_scored_exons>554</cumulative_length_of_scored_exons>
        <coverage percentage="0.995" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0236E02.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E355919" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="14931" e_stop="15182"/>
          <exon e_start="16380" e_stop="16441"/>
          <exon e_start="16814" e_stop="16957"/>
          <exon e_start="17056" e_stop="17104"/>
          <exon e_start="17189" e_stop="17235"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TATACTATTACTAGTTAGTAACAAAGTAGTATAAAGGGCAAGCAAAAGCTAAAGGAAGCTCATTGAGAAATGTCAACTGCTTCCATTAACAATTGCCTTACTCTCTCCCCTGCTCAAGCTTCCCTTAAGAAACCTACTCGTCCCGTTGCCTTCGCAAGGCTTGGCAA--C-TCTTCTTCTTCTTCTTCTATTCCAAGTCTCATCAGAAACGAGCCCGTCTTTGCTGCCCCTACTCCCATCATCAACCCCATTGTGGTACGAATTTTTAACTTACATCACTGTATTTTAATCTGTTATAACAAGTTATTTATATTTGACGTTACTTAATTTATTTTTTAAGCAAGACATTTTTTTTGTCTTATCGTATTTTTTGTAACGACTTGTGTCCATGCATGCTAGTTCACGTGAAAATTCAATATTGGCATAGTTCTAAACTTTAGTTTCTAACCACCTTTATTATTGGTATTGTTATTTTTGGCCATGAATCTCCTGAAGTTAGGTGAATTGATCATGTCGCTCTAAATTGTACACGTCTATTGCGTGTACTCAATGACATATAATATATTATTGCAATCCTAAAATAAGTGTTATTTTAATTTATTTTGAACTCATTAAAATAAATATGATATTTTACTGAGTTACTTATATTTATTACTTTGATTTTTTTGAGTACTAATTTGTATTTTGAAACTTTTAAGATGACGAGAGGGTGGAAATAACAAATTAAATTTGAAAATGAACCAAAATAGAGGTGGCAATTAGGTAGAGGTTCTCGCAAAATGAATATTAAATATGTAGGGCCGTATTGTGAATTATGTGGATAATGTTTTTGCTTTCTATTTTTTTTTAAAAAAAATAATTATTACTTACAATAATCCAACGGGTATCCTCGTATGTGCCCATCCTACAAGTGATAAAATGATAAGTACCAGTCTACCATCAAGTTTGTAGGATAGAAACTATTTAGTATACATTGTTTTTGTCTTAATTTCTAGTTTTGGTATCCATCTAAATCGATACTCCATTATGTTAATTATTTCATTTCTTTCTTTTGACATCTACATCACTTTTTAATGTGGTTACCACTTGCTATAATCATACTTCACTTAGCATTTTATTTGAACTTAGTGAAAGTGAAATTTTTCCTAATAATTGGTCTAAAAATTGAAGAAGATTAAAGCCAAGAAATTGAGTTCTTCCTTCTTTCTTCCAACTTTGAAAGTACCGATAGATACTATCATATAAAAAGAAGAGGTGGTCTGACTAACTCAATGAAGTGAATTTTTCAAAAACATGCTCAGAAAAATGAGAAAAATGGAGTTTTTGAAAAGAAAAATTAACAGATATTTAAAGATAAATTTTTGAAATTTGGTTCAAAATTTATGGTCAAATATTAACTTATATTTATATATATACCTCTTCTAAAATGCTAATGAGAATTAGAATTTGCAGAGAGAAGAAATGGCAAAAGAATCCTACGATCAAGCCATTGCTGCACTCGAGAAACTCCTCAGGTTTGTACTCTCTCTACGACTCTACCTTCTAAATCACACTACTTTTTTCTCGATCAAGTGGGGCCCAAAAAATATACATACACCCACACATACGTAGACAAAAAAAATGTTAAAATTTGCGAATATGCAGAGAAAACATAATATAATCATGCAATGTTTACTCGTAAAATTCAATTTCCCGGCAATGAACATGTTACTTGGTTTCGAGTTCTCCAGATCTGCATTAATTTTACCATTCTATCATCATTTTTTTACCCCATATCTGCATTAATTTATCATGGTAATGGTGCTCAAACCACAAATCTTTTTTTTTTCTACCTGAAATATTGCTTCAATAATAATAATGGTCTAAATTATTTTCTGCAATTACAGCGAGAAAGCAGAACTTGGACCAGTTGCTGCAGCAAGAGTTGACCAGATCACTGCTGAATTGAAATCAGCAGACGGCGGCAAGGCATTCGACCCTGTTGAGCACATGAAAGCTGGCTTTATTCATTTCAAGACTGAGAAATATGAGTAAGCAAATTCATTCAAATTAAAATTTCTGCATATTTGATGTTGTAACATTATTAGTGTCTGATAATTTTTCCTGTTTTCTATTTATGTACCAACAGCACAAACCCAGCCTTATATGGTGAGCTAGCAAAGGGCCAGAGCCCTAAGGTACAAATTCCTTGTTAATTTGTTGTCTAATTTTATGATTTGTACGGTTTCTGATGAGTTCTATTGTCCTAAATGTGTAAACAGTTCATGGTTTTCGCGTGCTCTGACTCACGAGTCTGCCCATCCCATGT</genome_strand>
        <mrna_strand>TATACTATTACTAGTTAGTAACAAAGTAGTATAAAGGGCAAGCAAAAGCTAAAGGAAGCTCATTGAGAAATGTCAACTGCTTCCATTAACAATTGCCTCACTCTCTCCCCTGCTCAAGCTTCCCTTAAGAAACCTACTCGTCCCGTTGCCTTCGCAAGGCTTGGCAACTCTTCTTCTTCTTCTTCTTCTATTCCAAGTCTCATCAGAAACGAGCCCGTCTTTGCTGCCCCTACTCCCATCATCAACCCCATTGTG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGAGAAGAAATGGCAAAAGAATCCTACGATCAGGCCATTGCTGCACTCGAGAAACTCCTCAG....................................................................................................................................................................................................................................................................................................................................................................................CGAGAAAGCAGAACTTGGACCAGTTGCTGCAGCAAGAGTTGATCAGATCACTGCTGAATTGAAATCAGCAGATGGCGGCAAGGCATTCGACCCTGTTGAGCACATGAAAGCTGGCTTTATTCATTTCAAGACTGAGAAATATGA..................................................................................................TACAAACCCAGCCTTATATGGTGAACTAGCAAAGGGCCAGAGCCCTAAG....................................................................................TTCATGGTTNTCGCGTGCTCTGACTCACGAGTGTGCCCATCCCATGT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0236E02-u8qcS/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E358187" ref_strand="+" ref_description="SGN-E358187 [cLHT-23-B11]">
      <seq>atactattactagttagtaacaaagtagtataaagggcaagcaaaagctaaaggaagctcattgagaaatgtcaactgcttccattaacaattgcctcactctctcccctgctcaagcttcccttaagaaacctactcgtcccgttgccttcgcaaggcttggcaactcttcttcttcttcttcttctattccaagtctcatcagaaacgagcccgtctttgctgcccctactcccatcatcaaccccattgtgagagaagaaatggcaaaagaatcctacgatcaggccattgctgcactcgagaaactcctcagcgagaaagcagaacttggaccatttgctgcagcaagagttgatcagatcactgctgaattgaaatcagcagatggcggcaaggcattcgaccctgttgagcacatgaaagctggctttattcatttcaagactgagaaatatgatacaaac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0236E02-u8qcS/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0236E02.1" temp_strand="+" temp_description="C02HBa0236E02.1  AC215430.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0236E02 sequenced_by:kribb upload_account_name:korea">
        <position start="14632" stop="17260"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="14932" g_stop="15182" g_length="251"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="254" r_length="254" r_score="0.972"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="15183" i_stop="16379" i_length="1197">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.971" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="16380" g_stop="16441" g_length="62"/>
          <reference_exon_boundary r_type="cDNA" r_start="255" r_stop="316" r_length="62" r_score="0.984"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="16442" i_stop="16813" i_length="372">
            <donor d_prob="0.999" d_score="0.98"/>
            <acceptor a_prob="1.000" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="16814" g_stop="16957" g_length="144"/>
          <reference_exon_boundary r_type="cDNA" r_start="317" r_stop="460" r_length="144" r_score="0.979"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="16958" i_stop="17055" i_length="98">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="17056" g_stop="17062" g_length="7"/>
          <reference_exon_boundary r_type="cDNA" r_start="461" r_stop="467" r_length="7" r_score="0.857"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0236E02.1" gen_strand="+" ref_id="SGN-E358187" ref_strand="+">
        <total_alignment_score>0.976</total_alignment_score>
        <cumulative_length_of_scored_exons>464</cumulative_length_of_scored_exons>
        <coverage percentage="0.994" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0236E02.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E358187" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="14932" e_stop="15182"/>
          <exon e_start="16380" e_stop="16441"/>
          <exon e_start="16814" e_stop="16957"/>
          <exon e_start="17056" e_stop="17062"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATACTATTACTAGTTAGTAACAAAGTAGTATAAAGGGCAAGCAAAAGCTAAAGGAAGCTCATTGAGAAATGTCAACTGCTTCCATTAACAATTGCCTTACTCTCTCCCCTGCTCAAGCTTCCCTTAAGAAACCTACTCGTCCCGTTGCCTTCGCAAGGCTTGGCAA--C-TCTTCTTCTTCTTCTTCTATTCCAAGTCTCATCAGAAACGAGCCCGTCTTTGCTGCCCCTACTCCCATCATCAACCCCATTGTGGTACGAATTTTTAACTTACATCACTGTATTTTAATCTGTTATAACAAGTTATTTATATTTGACGTTACTTAATTTATTTTTTAAGCAAGACATTTTTTTTGTCTTATCGTATTTTTTGTAACGACTTGTGTCCATGCATGCTAGTTCACGTGAAAATTCAATATTGGCATAGTTCTAAACTTTAGTTTCTAACCACCTTTATTATTGGTATTGTTATTTTTGGCCATGAATCTCCTGAAGTTAGGTGAATTGATCATGTCGCTCTAAATTGTACACGTCTATTGCGTGTACTCAATGACATATAATATATTATTGCAATCCTAAAATAAGTGTTATTTTAATTTATTTTGAACTCATTAAAATAAATATGATATTTTACTGAGTTACTTATATTTATTACTTTGATTTTTTTGAGTACTAATTTGTATTTTGAAACTTTTAAGATGACGAGAGGGTGGAAATAACAAATTAAATTTGAAAATGAACCAAAATAGAGGTGGCAATTAGGTAGAGGTTCTCGCAAAATGAATATTAAATATGTAGGGCCGTATTGTGAATTATGTGGATAATGTTTTTGCTTTCTATTTTTTTTTAAAAAAAATAATTATTACTTACAATAATCCAACGGGTATCCTCGTATGTGCCCATCCTACAAGTGATAAAATGATAAGTACCAGTCTACCATCAAGTTTGTAGGATAGAAACTATTTAGTATACATTGTTTTTGTCTTAATTTCTAGTTTTGGTATCCATCTAAATCGATACTCCATTATGTTAATTATTTCATTTCTTTCTTTTGACATCTACATCACTTTTTAATGTGGTTACCACTTGCTATAATCATACTTCACTTAGCATTTTATTTGAACTTAGTGAAAGTGAAATTTTTCCTAATAATTGGTCTAAAAATTGAAGAAGATTAAAGCCAAGAAATTGAGTTCTTCCTTCTTTCTTCCAACTTTGAAAGTACCGATAGATACTATCATATAAAAAGAAGAGGTGGTCTGACTAACTCAATGAAGTGAATTTTTCAAAAACATGCTCAGAAAAATGAGAAAAATGGAGTTTTTGAAAAGAAAAATTAACAGATATTTAAAGATAAATTTTTGAAATTTGGTTCAAAATTTATGGTCAAATATTAACTTATATTTATATATATACCTCTTCTAAAATGCTAATGAGAATTAGAATTTGCAGAGAGAAGAAATGGCAAAAGAATCCTACGATCAAGCCATTGCTGCACTCGAGAAACTCCTCAGGTTTGTACTCTCTCTACGACTCTACCTTCTAAATCACACTACTTTTTTCTCGATCAAGTGGGGCCCAAAAAATATACATACACCCACACATACGTAGACAAAAAAAATGTTAAAATTTGCGAATATGCAGAGAAAACATAATATAATCATGCAATGTTTACTCGTAAAATTCAATTTCCCGGCAATGAACATGTTACTTGGTTTCGAGTTCTCCAGATCTGCATTAATTTTACCATTCTATCATCATTTTTTTACCCCATATCTGCATTAATTTATCATGGTAATGGTGCTCAAACCACAAATCTTTTTTTTTTCTACCTGAAATATTGCTTCAATAATAATAATGGTCTAAATTATTTTCTGCAATTACAGCGAGAAAGCAGAACTTGGACCAGTTGCTGCAGCAAGAGTTGACCAGATCACTGCTGAATTGAAATCAGCAGACGGCGGCAAGGCATTCGACCCTGTTGAGCACATGAAAGCTGGCTTTATTCATTTCAAGACTGAGAAATATGAGTAAGCAAATTCATTCAAATTAAAATTTCTGCATATTTGATGTTGTAACATTATTAGTGTCTGATAATTTTTCCTGTTTTCTATTTATGTACCAACAGCACAAAC</genome_strand>
        <mrna_strand>ATACTATTACTAGTTAGTAACAAAGTAGTATAAAGGGCAAGCAAAAGCTAAAGGAAGCTCATTGAGAAATGTCAACTGCTTCCATTAACAATTGCCTCACTCTCTCCCCTGCTCAAGCTTCCCTTAAGAAACCTACTCGTCCCGTTGCCTTCGCAAGGCTTGGCAACTCTTCTTCTTCTTCTTCTTCTATTCCAAGTCTCATCAGAAACGAGCCCGTCTTTGCTGCCCCTACTCCCATCATCAACCCCATTGTG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGAGAAGAAATGGCAAAAGAATCCTACGATCAGGCCATTGCTGCACTCGAGAAACTCCTCAG....................................................................................................................................................................................................................................................................................................................................................................................CGAGAAAGCAGAACTTGGACCATTTGCTGCAGCAAGAGTTGATCAGATCACTGCTGAATTGAAATCAGCAGATGGCGGCAAGGCATTCGACCCTGTTGAGCACATGAAAGCTGGCTTTATTCATTTCAAGACTGAGAAATATGA..................................................................................................TACAAAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0236E02-u8qcS/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E402664" ref_strand="+" ref_description="SGN-E402664 [PPC-8-I12]">
      <seq>gaatattactagtgagtaacaaagtagtataaaggtcaagcaaaagctaaaggaagctcattgagacatgtcaactgcttccattaacaattgccttactatctcccctgctcaagcttcccttaagaaacctactcgtcccgttgccttcgcaaggcttggcaactcttcttcttcttctattccaagtctcatcagaaacgagcccgtcttcgctgcccctactcccatcatcaaccccattgtgagagaagaaatggcaaaagaatcatacgatcaggccattgctgcactcgagaaactcctcagcgagaaggcagaacttggaccagttgctgcagcaagagttgaccagattactgctgaattgaaatcagcagatggcagcaaagccttcgaccctgttgagcacatgaaagctggctttattcatttcaagactgaaaaatatgata</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0236E02-u8qcS/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0236E02.1" temp_strand="+" temp_description="C02HBa0236E02.1  AC215430.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0236E02 sequenced_by:kribb upload_account_name:korea">
        <position start="14634" stop="17260"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="14933" g_stop="15182" g_length="250"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="247" r_length="247" r_score="0.960"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="15183" i_stop="16379" i_length="1197">
            <donor d_prob="1.000" d_score="0.98"/>
            <acceptor a_prob="0.971" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="16380" g_stop="16441" g_length="62"/>
          <reference_exon_boundary r_type="cDNA" r_start="248" r_stop="309" r_length="62" r_score="0.968"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="16442" i_stop="16813" i_length="372">
            <donor d_prob="0.999" d_score="0.96"/>
            <acceptor a_prob="1.000" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="16814" g_stop="16957" g_length="144"/>
          <reference_exon_boundary r_type="cDNA" r_start="310" r_stop="453" r_length="144" r_score="0.951"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0236E02.1" gen_strand="+" ref_id="SGN-E402664" ref_strand="+">
        <total_alignment_score>0.958</total_alignment_score>
        <cumulative_length_of_scored_exons>456</cumulative_length_of_scored_exons>
        <coverage percentage="1.002" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0236E02.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E402664" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="14933" e_stop="15182"/>
          <exon e_start="16380" e_stop="16441"/>
          <exon e_start="16814" e_stop="16957"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TACTATTACTAGTTAGTAACAAAGTAGTATAAAGGGCAAGCAAAAGCTAAAGGAAGCTCATTGAGAAATGTCAACTGCTTCCATTAACAATTGCCTTACTCTCTCCCCTGCTCAAGCTTCCCTTAAGAAACCTACTCGTCCCGTTGCCTTCGCAAGGCTTGGCAACTCTTCTTCTTCTTCTTCTATTCCAAGTCTCATCAGAAACGAGCCCGTCTTTGCTGCCCCTACTCCCATCATCAACCCCATTGTGGTACGAATTTTTAACTTACATCACTGTATTTTAATCTGTTATAACAAGTTATTTATATTTGACGTTACTTAATTTATTTTTTAAGCAAGACATTTTTTTTGTCTTATCGTATTTTTTGTAACGACTTGTGTCCATGCATGCTAGTTCACGTGAAAATTCAATATTGGCATAGTTCTAAACTTTAGTTTCTAACCACCTTTATTATTGGTATTGTTATTTTTGGCCATGAATCTCCTGAAGTTAGGTGAATTGATCATGTCGCTCTAAATTGTACACGTCTATTGCGTGTACTCAATGACATATAATATATTATTGCAATCCTAAAATAAGTGTTATTTTAATTTATTTTGAACTCATTAAAATAAATATGATATTTTACTGAGTTACTTATATTTATTACTTTGATTTTTTTGAGTACTAATTTGTATTTTGAAACTTTTAAGATGACGAGAGGGTGGAAATAACAAATTAAATTTGAAAATGAACCAAAATAGAGGTGGCAATTAGGTAGAGGTTCTCGCAAAATGAATATTAAATATGTAGGGCCGTATTGTGAATTATGTGGATAATGTTTTTGCTTTCTATTTTTTTTTAAAAAAAATAATTATTACTTACAATAATCCAACGGGTATCCTCGTATGTGCCCATCCTACAAGTGATAAAATGATAAGTACCAGTCTACCATCAAGTTTGTAGGATAGAAACTATTTAGTATACATTGTTTTTGTCTTAATTTCTAGTTTTGGTATCCATCTAAATCGATACTCCATTATGTTAATTATTTCATTTCTTTCTTTTGACATCTACATCACTTTTTAATGTGGTTACCACTTGCTATAATCATACTTCACTTAGCATTTTATTTGAACTTAGTGAAAGTGAAATTTTTCCTAATAATTGGTCTAAAAATTGAAGAAGATTAAAGCCAAGAAATTGAGTTCTTCCTTCTTTCTTCCAACTTTGAAAGTACCGATAGATACTATCATATAAAAAGAAGAGGTGGTCTGACTAACTCAATGAAGTGAATTTTTCAAAAACATGCTCAGAAAAATGAGAAAAATGGAGTTTTTGAAAAGAAAAATTAACAGATATTTAAAGATAAATTTTTGAAATTTGGTTCAAAATTTATGGTCAAATATTAACTTATATTTATATATATACCTCTTCTAAAATGCTAATGAGAATTAGAATTTGCAGAGAGAAGAAATGGCAAAAGAATCCTACGATCAAGCCATTGCTGCACTCGAGAAACTCCTCAGGTTTGTACTCTCTCTACGACTCTACCTTCTAAATCACACTACTTTTTTCTCGATCAAGTGGGGCCCAAAAAATATACATACACCCACACATACGTAGACAAAAAAAATGTTAAAATTTGCGAATATGCAGAGAAAACATAATATAATCATGCAATGTTTACTCGTAAAATTCAATTTCCCGGCAATGAACATGTTACTTGGTTTCGAGTTCTCCAGATCTGCATTAATTTTACCATTCTATCATCATTTTTTTACCCCATATCTGCATTAATTTATCATGGTAATGGTGCTCAAACCACAAATCTTTTTTTTTTCTACCTGAAATATTGCTTCAATAATAATAATGGTCTAAATTATTTTCTGCAATTACAGCGAGAAAGCAGAACTTGGACCAGTTGCTGCAGCAAGAGTTGACCAGATCACTGCTGAATTGAAATCAGCAGACGGCGGCAAGGCATTCGACCCTGTTGAGCACATGAAAGCTGGCTTTATTCATTTCAAGACTGAGAAATATGA</genome_strand>
        <mrna_strand>GAATATTACTAGTGAGTAACAAAGTAGTATAAAGGTCAAGCAAAAGCTAAAGGAAGCTCATTGAGACATGTCAACTGCTTCCATTAACAATTGCCTTACTATCTCCCCTGCTCAAGCTTCCCTTAAGAAACCTACTCGTCCCGTTGCCTTCGCAAGGCTTGGCAA--C-TCTTCTTCTTCTTCTATTCCAAGTCTCATCAGAAACGAGCCCGTCTTCGCTGCCCCTACTCCCATCATCAACCCCATTGTG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGAGAAGAAATGGCAAAAGAATCATACGATCAGGCCATTGCTGCACTCGAGAAACTCCTCAG....................................................................................................................................................................................................................................................................................................................................................................................CGAGAAGGCAGAACTTGGACCAGTTGCTGCAGCAAGAGTTGACCAGATTACTGCTGAATTGAAATCAGCAGATGGCAGCAAAGCCTTCGACCCTGTTGAGCACATGAAAGCTGGCTTTATTCATTTCAAGACTGAAAAATATGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0236E02-u8qcS/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E739401" ref_strand="+" ref_description="SGN-E739401 [LC17BC04]">
      <seq>actattactagttagtaacaaagtagtataaagggcaagcaaaagctaaaggaagctcattgagaaatgtcaactgcttccattaacaattgccttactctctcccctgctcaagcttcccttaagaaacctactcgtcccgttgccttcgcaaggcttggcaactcttcttcttcttcttctattccaagtctcatcagaaacgagcccgtctttgctgcccctactcccatcatcaaccccattgtgagagaagaaatggcaaaagaatcctacgatcaagccattgctgcactcgagaaactcctcagcgagaaagcagaacttggaccagttgctgcagcaagagttgaccagatcactgctgaattgaaatcagcagacggcggcaaggcattcgaccctgttgagcacatgaaagctggctttattcatttcaagactgagaaatatgacacaaacccagccttatatggtgagctagcaaagggccagagccctaagttcatggttttcgcgtgctctgactcacgagtctgcccatcccatgtcctcaacttccaacctggtgaggcattcatggttcgtaacatcgccaacatggtccctgcttatgacaaggtcaggtactctggagtaggagcagccattgaatacgccgttcttcatcttaaggtggagaacatcgttgtcattggccacagtgcttgtggaggtatcaaaggtctcatgtcactacctgaagatggtagtgaatcaactgcctttattgaggattgggtaaaaatttgtttacctgccaaggcaaaggttctggccgatcacggagggaaagaatttgcacatcaatgcacagcttgtgagaaagaagctgtgaacgtttcacttggaaatctgctta</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0236E02-u8qcS/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0236E02.1" temp_strand="+" temp_description="C02HBa0236E02.1  AC215430.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0236E02 sequenced_by:kribb upload_account_name:korea">
        <position start="14634" stop="18127"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="14934" g_stop="15182" g_length="249"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="249" r_length="249" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="15183" i_stop="16379" i_length="1197">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.971" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="16380" g_stop="16441" g_length="62"/>
          <reference_exon_boundary r_type="cDNA" r_start="250" r_stop="311" r_length="62" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="16442" i_stop="16813" i_length="372">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="16814" g_stop="16957" g_length="144"/>
          <reference_exon_boundary r_type="cDNA" r_start="312" r_stop="455" r_length="144" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="16958" i_stop="17055" i_length="98">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="17056" g_stop="17104" g_length="49"/>
          <reference_exon_boundary r_type="cDNA" r_start="456" r_stop="504" r_length="49" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="17105" i_stop="17188" i_length="84">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.961" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="17189" g_stop="17305" g_length="117"/>
          <reference_exon_boundary r_type="cDNA" r_start="505" r_stop="621" r_length="117" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="17306" i_stop="17390" i_length="85">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.979" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="17391" g_stop="17530" g_length="140"/>
          <reference_exon_boundary r_type="cDNA" r_start="622" r_stop="761" r_length="140" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="17531" i_stop="17607" i_length="77">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.948" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="17608" g_stop="17713" g_length="106"/>
          <reference_exon_boundary r_type="cDNA" r_start="762" r_stop="867" r_length="106" r_score="0.991"/>
        </exon>
        <intron i_serial="7">
          <gDNA_intron_boundary i_start="17714" i_stop="17793" i_length="80">
            <donor d_prob="1.000" d_score="0.98"/>
            <acceptor a_prob="0.997" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="8">
          <gDNA_exon_boundary g_start="17794" g_stop="17827" g_length="34"/>
          <reference_exon_boundary r_type="cDNA" r_start="868" r_stop="901" r_length="34" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0236E02.1" gen_strand="+" ref_id="SGN-E739401" ref_strand="+">
        <total_alignment_score>0.999</total_alignment_score>
        <cumulative_length_of_scored_exons>901</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0236E02.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E739401" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="14934" e_stop="15182"/>
          <exon e_start="16380" e_stop="16441"/>
          <exon e_start="16814" e_stop="16957"/>
          <exon e_start="17056" e_stop="17104"/>
          <exon e_start="17189" e_stop="17305"/>
          <exon e_start="17391" e_stop="17530"/>
          <exon e_start="17608" e_stop="17713"/>
          <exon e_start="17794" e_stop="17827"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACTATTACTAGTTAGTAACAAAGTAGTATAAAGGGCAAGCAAAAGCTAAAGGAAGCTCATTGAGAAATGTCAACTGCTTCCATTAACAATTGCCTTACTCTCTCCCCTGCTCAAGCTTCCCTTAAGAAACCTACTCGTCCCGTTGCCTTCGCAAGGCTTGGCAACTCTTCTTCTTCTTCTTCTATTCCAAGTCTCATCAGAAACGAGCCCGTCTTTGCTGCCCCTACTCCCATCATCAACCCCATTGTGGTACGAATTTTTAACTTACATCACTGTATTTTAATCTGTTATAACAAGTTATTTATATTTGACGTTACTTAATTTATTTTTTAAGCAAGACATTTTTTTTGTCTTATCGTATTTTTTGTAACGACTTGTGTCCATGCATGCTAGTTCACGTGAAAATTCAATATTGGCATAGTTCTAAACTTTAGTTTCTAACCACCTTTATTATTGGTATTGTTATTTTTGGCCATGAATCTCCTGAAGTTAGGTGAATTGATCATGTCGCTCTAAATTGTACACGTCTATTGCGTGTACTCAATGACATATAATATATTATTGCAATCCTAAAATAAGTGTTATTTTAATTTATTTTGAACTCATTAAAATAAATATGATATTTTACTGAGTTACTTATATTTATTACTTTGATTTTTTTGAGTACTAATTTGTATTTTGAAACTTTTAAGATGACGAGAGGGTGGAAATAACAAATTAAATTTGAAAATGAACCAAAATAGAGGTGGCAATTAGGTAGAGGTTCTCGCAAAATGAATATTAAATATGTAGGGCCGTATTGTGAATTATGTGGATAATGTTTTTGCTTTCTATTTTTTTTTAAAAAAAATAATTATTACTTACAATAATCCAACGGGTATCCTCGTATGTGCCCATCCTACAAGTGATAAAATGATAAGTACCAGTCTACCATCAAGTTTGTAGGATAGAAACTATTTAGTATACATTGTTTTTGTCTTAATTTCTAGTTTTGGTATCCATCTAAATCGATACTCCATTATGTTAATTATTTCATTTCTTTCTTTTGACATCTACATCACTTTTTAATGTGGTTACCACTTGCTATAATCATACTTCACTTAGCATTTTATTTGAACTTAGTGAAAGTGAAATTTTTCCTAATAATTGGTCTAAAAATTGAAGAAGATTAAAGCCAAGAAATTGAGTTCTTCCTTCTTTCTTCCAACTTTGAAAGTACCGATAGATACTATCATATAAAAAGAAGAGGTGGTCTGACTAACTCAATGAAGTGAATTTTTCAAAAACATGCTCAGAAAAATGAGAAAAATGGAGTTTTTGAAAAGAAAAATTAACAGATATTTAAAGATAAATTTTTGAAATTTGGTTCAAAATTTATGGTCAAATATTAACTTATATTTATATATATACCTCTTCTAAAATGCTAATGAGAATTAGAATTTGCAGAGAGAAGAAATGGCAAAAGAATCCTACGATCAAGCCATTGCTGCACTCGAGAAACTCCTCAGGTTTGTACTCTCTCTACGACTCTACCTTCTAAATCACACTACTTTTTTCTCGATCAAGTGGGGCCCAAAAAATATACATACACCCACACATACGTAGACAAAAAAAATGTTAAAATTTGCGAATATGCAGAGAAAACATAATATAATCATGCAATGTTTACTCGTAAAATTCAATTTCCCGGCAATGAACATGTTACTTGGTTTCGAGTTCTCCAGATCTGCATTAATTTTACCATTCTATCATCATTTTTTTACCCCATATCTGCATTAATTTATCATGGTAATGGTGCTCAAACCACAAATCTTTTTTTTTTCTACCTGAAATATTGCTTCAATAATAATAATGGTCTAAATTATTTTCTGCAATTACAGCGAGAAAGCAGAACTTGGACCAGTTGCTGCAGCAAGAGTTGACCAGATCACTGCTGAATTGAAATCAGCAGACGGCGGCAAGGCATTCGACCCTGTTGAGCACATGAAAGCTGGCTTTATTCATTTCAAGACTGAGAAATATGAGTAAGCAAATTCATTCAAATTAAAATTTCTGCATATTTGATGTTGTAACATTATTAGTGTCTGATAATTTTTCCTGTTTTCTATTTATGTACCAACAGCACAAACCCAGCCTTATATGGTGAGCTAGCAAAGGGCCAGAGCCCTAAGGTACAAATTCCTTGTTAATTTGTTGTCTAATTTTATGATTTGTACGGTTTCTGATGAGTTCTATTGTCCTAAATGTGTAAACAGTTCATGGTTTTCGCGTGCTCTGACTCACGAGTCTGCCCATCCCATGTCCTCAACTTCCAACCTGGTGAGGCATTCATGGTTCGTAACATCGCCAACATGGTCCCTGCTTATGACAAGGTCAGTTACAAATCGATCAACTAGTCGATTATTTCGCTCTGGAATTGTGTTTTTTAAAAATAAAGATGGAATTGAATTTTTACAGGTCAGGTACTCTGGAGTAGGAGCAGCCATTGAATACGCCGTTCTTCATCTTAAGGTGGAGAACATCGTTGTCATTGGCCACAGTGCTTGTGGAGGTATCAAAGGTCTCATGTCACTACCTGAAGATGGTAGTGAATCAACGTACGTCACTCTATAAATCTATTCATTCAAAACACTTATCCTTAACAGATGATTGATTAATAATCTAATATACGCAGTGCCTTTATTGAGGATTGGGTAAAAATTTGTTTACCTGCCAAGGCAAAGGTTCTGGCCGATCACGGAGGGAAAGAATTTGCACATCAATGCACAGCTTGTGAGAAGGTAAAATTCAAATTTAACTTTTTGATTATCAATTAATTACATATATAGCAGTATTTTATAATTGATGAAAAATGTTGCAGGAAGCTGTGAACGTTTCACTTGGAAATCTGCTTA</genome_strand>
        <mrna_strand>ACTATTACTAGTTAGTAACAAAGTAGTATAAAGGGCAAGCAAAAGCTAAAGGAAGCTCATTGAGAAATGTCAACTGCTTCCATTAACAATTGCCTTACTCTCTCCCCTGCTCAAGCTTCCCTTAAGAAACCTACTCGTCCCGTTGCCTTCGCAAGGCTTGGCAACTCTTCTTCTTCTTCTTCTATTCCAAGTCTCATCAGAAACGAGCCCGTCTTTGCTGCCCCTACTCCCATCATCAACCCCATTGTG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGAGAAGAAATGGCAAAAGAATCCTACGATCAAGCCATTGCTGCACTCGAGAAACTCCTCAG....................................................................................................................................................................................................................................................................................................................................................................................CGAGAAAGCAGAACTTGGACCAGTTGCTGCAGCAAGAGTTGACCAGATCACTGCTGAATTGAAATCAGCAGACGGCGGCAAGGCATTCGACCCTGTTGAGCACATGAAAGCTGGCTTTATTCATTTCAAGACTGAGAAATATGA..................................................................................................CACAAACCCAGCCTTATATGGTGAGCTAGCAAAGGGCCAGAGCCCTAAG....................................................................................TTCATGGTTTTCGCGTGCTCTGACTCACGAGTCTGCCCATCCCATGTCCTCAACTTCCAACCTGGTGAGGCATTCATGGTTCGTAACATCGCCAACATGGTCCCTGCTTATGACAAG.....................................................................................GTCAGGTACTCTGGAGTAGGAGCAGCCATTGAATACGCCGTTCTTCATCTTAAGGTGGAGAACATCGTTGTCATTGGCCACAGTGCTTGTGGAGGTATCAAAGGTCTCATGTCACTACCTGAAGATGGTAGTGAATCAAC.............................................................................TGCCTTTATTGAGGATTGGGTAAAAATTTGTTTACCTGCCAAGGCAAAGGTTCTGGCCGATCACGGAGGGAAAGAATTTGCACATCAATGCACAGCTTGTGAGAAA................................................................................GAAGCTGTGAACGTTTCACTTGGAAATCTGCTTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0236E02-u8qcS/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E728472" ref_strand="+" ref_description="SGN-E728472 [LA17DG05]">
      <seq>actattactagttagtaacaaagtagtataaagggcaagcaaaagctaaaggaagctcattgagaaatgtcaactgcttccattaacaattgccttactctctcccctgctcaagcttcccttaagaaacctactcgtcccgttgccttcgcaaggcttggcaactcttcttcttcttcttctattccaagtctcatcagaaacgagcccgtctttgctgcccctactcccatcatcaaccccattgtgagagaagaaatggcaaaagaatcctacgatcaagccattgctgcactcgagaaactcctcagcgagaaagcagaacttggaccagttgctgcagcaagagttgaccagatcactgctgaattgaaatcagcagacggcggcaaggcattcgaccctgttgagcacatgaaagctggctttattcatttcaagactgagaaatatgacacaaacccagccttatatggtgagctagcaaagggccagagccctaagttcatggttttcgcgtgctctgactcacgagtctgcccatcccatgtcctcaacttccaacctggtgaggcattcatggttcgtaacatcgccaacatggtccctgcttatgacaaggtcaggtactctggagtaggagcagccattgaatacgccgttcttcatcttaaggtggagaacatcgttgtcattggccacagtgcttgtggaggtatcaaaggtctcatgtcactacctgaagatggtagtgaatcaact</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0236E02-u8qcS/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0236E02.1" temp_strand="+" temp_description="C02HBa0236E02.1  AC215430.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0236E02 sequenced_by:kribb upload_account_name:korea">
        <position start="14634" stop="17830"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="14934" g_stop="15182" g_length="249"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="249" r_length="249" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="15183" i_stop="16379" i_length="1197">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.971" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="16380" g_stop="16441" g_length="62"/>
          <reference_exon_boundary r_type="cDNA" r_start="250" r_stop="311" r_length="62" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="16442" i_stop="16813" i_length="372">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="16814" g_stop="16957" g_length="144"/>
          <reference_exon_boundary r_type="cDNA" r_start="312" r_stop="455" r_length="144" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="16958" i_stop="17055" i_length="98">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="17056" g_stop="17104" g_length="49"/>
          <reference_exon_boundary r_type="cDNA" r_start="456" r_stop="504" r_length="49" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="17105" i_stop="17188" i_length="84">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.961" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="17189" g_stop="17305" g_length="117"/>
          <reference_exon_boundary r_type="cDNA" r_start="505" r_stop="621" r_length="117" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="17306" i_stop="17390" i_length="85">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.979" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="17391" g_stop="17530" g_length="140"/>
          <reference_exon_boundary r_type="cDNA" r_start="622" r_stop="761" r_length="140" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0236E02.1" gen_strand="+" ref_id="SGN-E728472" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>761</cumulative_length_of_scored_exons>
        <coverage percentage="0.999" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0236E02.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E728472" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="14934" e_stop="15182"/>
          <exon e_start="16380" e_stop="16441"/>
          <exon e_start="16814" e_stop="16957"/>
          <exon e_start="17056" e_stop="17104"/>
          <exon e_start="17189" e_stop="17305"/>
          <exon e_start="17391" e_stop="17530"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACTATTACTAGTTAGTAACAAAGTAGTATAAAGGGCAAGCAAAAGCTAAAGGAAGCTCATTGAGAAATGTCAACTGCTTCCATTAACAATTGCCTTACTCTCTCCCCTGCTCAAGCTTCCCTTAAGAAACCTACTCGTCCCGTTGCCTTCGCAAGGCTTGGCAACTCTTCTTCTTCTTCTTCTATTCCAAGTCTCATCAGAAACGAGCCCGTCTTTGCTGCCCCTACTCCCATCATCAACCCCATTGTGGTACGAATTTTTAACTTACATCACTGTATTTTAATCTGTTATAACAAGTTATTTATATTTGACGTTACTTAATTTATTTTTTAAGCAAGACATTTTTTTTGTCTTATCGTATTTTTTGTAACGACTTGTGTCCATGCATGCTAGTTCACGTGAAAATTCAATATTGGCATAGTTCTAAACTTTAGTTTCTAACCACCTTTATTATTGGTATTGTTATTTTTGGCCATGAATCTCCTGAAGTTAGGTGAATTGATCATGTCGCTCTAAATTGTACACGTCTATTGCGTGTACTCAATGACATATAATATATTATTGCAATCCTAAAATAAGTGTTATTTTAATTTATTTTGAACTCATTAAAATAAATATGATATTTTACTGAGTTACTTATATTTATTACTTTGATTTTTTTGAGTACTAATTTGTATTTTGAAACTTTTAAGATGACGAGAGGGTGGAAATAACAAATTAAATTTGAAAATGAACCAAAATAGAGGTGGCAATTAGGTAGAGGTTCTCGCAAAATGAATATTAAATATGTAGGGCCGTATTGTGAATTATGTGGATAATGTTTTTGCTTTCTATTTTTTTTTAAAAAAAATAATTATTACTTACAATAATCCAACGGGTATCCTCGTATGTGCCCATCCTACAAGTGATAAAATGATAAGTACCAGTCTACCATCAAGTTTGTAGGATAGAAACTATTTAGTATACATTGTTTTTGTCTTAATTTCTAGTTTTGGTATCCATCTAAATCGATACTCCATTATGTTAATTATTTCATTTCTTTCTTTTGACATCTACATCACTTTTTAATGTGGTTACCACTTGCTATAATCATACTTCACTTAGCATTTTATTTGAACTTAGTGAAAGTGAAATTTTTCCTAATAATTGGTCTAAAAATTGAAGAAGATTAAAGCCAAGAAATTGAGTTCTTCCTTCTTTCTTCCAACTTTGAAAGTACCGATAGATACTATCATATAAAAAGAAGAGGTGGTCTGACTAACTCAATGAAGTGAATTTTTCAAAAACATGCTCAGAAAAATGAGAAAAATGGAGTTTTTGAAAAGAAAAATTAACAGATATTTAAAGATAAATTTTTGAAATTTGGTTCAAAATTTATGGTCAAATATTAACTTATATTTATATATATACCTCTTCTAAAATGCTAATGAGAATTAGAATTTGCAGAGAGAAGAAATGGCAAAAGAATCCTACGATCAAGCCATTGCTGCACTCGAGAAACTCCTCAGGTTTGTACTCTCTCTACGACTCTACCTTCTAAATCACACTACTTTTTTCTCGATCAAGTGGGGCCCAAAAAATATACATACACCCACACATACGTAGACAAAAAAAATGTTAAAATTTGCGAATATGCAGAGAAAACATAATATAATCATGCAATGTTTACTCGTAAAATTCAATTTCCCGGCAATGAACATGTTACTTGGTTTCGAGTTCTCCAGATCTGCATTAATTTTACCATTCTATCATCATTTTTTTACCCCATATCTGCATTAATTTATCATGGTAATGGTGCTCAAACCACAAATCTTTTTTTTTTCTACCTGAAATATTGCTTCAATAATAATAATGGTCTAAATTATTTTCTGCAATTACAGCGAGAAAGCAGAACTTGGACCAGTTGCTGCAGCAAGAGTTGACCAGATCACTGCTGAATTGAAATCAGCAGACGGCGGCAAGGCATTCGACCCTGTTGAGCACATGAAAGCTGGCTTTATTCATTTCAAGACTGAGAAATATGAGTAAGCAAATTCATTCAAATTAAAATTTCTGCATATTTGATGTTGTAACATTATTAGTGTCTGATAATTTTTCCTGTTTTCTATTTATGTACCAACAGCACAAACCCAGCCTTATATGGTGAGCTAGCAAAGGGCCAGAGCCCTAAGGTACAAATTCCTTGTTAATTTGTTGTCTAATTTTATGATTTGTACGGTTTCTGATGAGTTCTATTGTCCTAAATGTGTAAACAGTTCATGGTTTTCGCGTGCTCTGACTCACGAGTCTGCCCATCCCATGTCCTCAACTTCCAACCTGGTGAGGCATTCATGGTTCGTAACATCGCCAACATGGTCCCTGCTTATGACAAGGTCAGTTACAAATCGATCAACTAGTCGATTATTTCGCTCTGGAATTGTGTTTTTTAAAAATAAAGATGGAATTGAATTTTTACAGGTCAGGTACTCTGGAGTAGGAGCAGCCATTGAATACGCCGTTCTTCATCTTAAGGTGGAGAACATCGTTGTCATTGGCCACAGTGCTTGTGGAGGTATCAAAGGTCTCATGTCACTACCTGAAGATGGTAGTGAATCAAC</genome_strand>
        <mrna_strand>ACTATTACTAGTTAGTAACAAAGTAGTATAAAGGGCAAGCAAAAGCTAAAGGAAGCTCATTGAGAAATGTCAACTGCTTCCATTAACAATTGCCTTACTCTCTCCCCTGCTCAAGCTTCCCTTAAGAAACCTACTCGTCCCGTTGCCTTCGCAAGGCTTGGCAACTCTTCTTCTTCTTCTTCTATTCCAAGTCTCATCAGAAACGAGCCCGTCTTTGCTGCCCCTACTCCCATCATCAACCCCATTGTG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGAGAAGAAATGGCAAAAGAATCCTACGATCAAGCCATTGCTGCACTCGAGAAACTCCTCAG....................................................................................................................................................................................................................................................................................................................................................................................CGAGAAAGCAGAACTTGGACCAGTTGCTGCAGCAAGAGTTGACCAGATCACTGCTGAATTGAAATCAGCAGACGGCGGCAAGGCATTCGACCCTGTTGAGCACATGAAAGCTGGCTTTATTCATTTCAAGACTGAGAAATATGA..................................................................................................CACAAACCCAGCCTTATATGGTGAGCTAGCAAAGGGCCAGAGCCCTAAG....................................................................................TTCATGGTTTTCGCGTGCTCTGACTCACGAGTCTGCCCATCCCATGTCCTCAACTTCCAACCTGGTGAGGCATTCATGGTTCGTAACATCGCCAACATGGTCCCTGCTTATGACAAG.....................................................................................GTCAGGTACTCTGGAGTAGGAGCAGCCATTGAATACGCCGTTCTTCATCTTAAGGTGGAGAACATCGTTGTCATTGGCCACAGTGCTTGTGGAGGTATCAAAGGTCTCATGTCACTACCTGAAGATGGTAGTGAATCAAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0236E02-u8qcS/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E470939" ref_strand="+" ref_description="SGN-E470939 [cSTB-21-I20]">
      <seq>aatattactagtgagtaacaaagcagtttttagggcatgcaaaagccaaaggaagctcattgagaaatgtcaactgcttccatttacaattgccttactatctcccctgctcaagcttcccttaagaaacctactcgtcccgttgccttcgcaaggcttggcaactcttcttcttcttcttctattccaagtctcatcagaaacaagcccgtcttcgctgcccctactcccatcatcaaccccattgtgagagaagaaatggcaaaagaatccttcgatctggccattgctgca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0236E02-u8qcS/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0236E02.1" temp_strand="+" temp_description="C02HBa0236E02.1  AC215430.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0236E02 sequenced_by:kribb upload_account_name:korea">
        <position start="14634" stop="16724"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="14934" g_stop="15182" g_length="249"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="249" r_length="249" r_score="0.952"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="15183" i_stop="16379" i_length="1197">
            <donor d_prob="1.000" d_score="0.96"/>
            <acceptor a_prob="0.971" a_score="0.93"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="16380" g_stop="16424" g_length="45"/>
          <reference_exon_boundary r_type="cDNA" r_start="250" r_stop="294" r_length="45" r_score="0.933"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0236E02.1" gen_strand="+" ref_id="SGN-E470939" ref_strand="+">
        <total_alignment_score>0.952</total_alignment_score>
        <cumulative_length_of_scored_exons>294</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0236E02.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E470939" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="14934" e_stop="15182"/>
          <exon e_start="16380" e_stop="16424"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACTATTACTAGTTAGTAACAAAGTAGTATAAAGGGCAAGCAAAAGCTAAAGGAAGCTCATTGAGAAATGTCAACTGCTTCCATTAACAATTGCCTTACTCTCTCCCCTGCTCAAGCTTCCCTTAAGAAACCTACTCGTCCCGTTGCCTTCGCAAGGCTTGGCAACTCTTCTTCTTCTTCTTCTATTCCAAGTCTCATCAGAAACGAGCCCGTCTTTGCTGCCCCTACTCCCATCATCAACCCCATTGTGGTACGAATTTTTAACTTACATCACTGTATTTTAATCTGTTATAACAAGTTATTTATATTTGACGTTACTTAATTTATTTTTTAAGCAAGACATTTTTTTTGTCTTATCGTATTTTTTGTAACGACTTGTGTCCATGCATGCTAGTTCACGTGAAAATTCAATATTGGCATAGTTCTAAACTTTAGTTTCTAACCACCTTTATTATTGGTATTGTTATTTTTGGCCATGAATCTCCTGAAGTTAGGTGAATTGATCATGTCGCTCTAAATTGTACACGTCTATTGCGTGTACTCAATGACATATAATATATTATTGCAATCCTAAAATAAGTGTTATTTTAATTTATTTTGAACTCATTAAAATAAATATGATATTTTACTGAGTTACTTATATTTATTACTTTGATTTTTTTGAGTACTAATTTGTATTTTGAAACTTTTAAGATGACGAGAGGGTGGAAATAACAAATTAAATTTGAAAATGAACCAAAATAGAGGTGGCAATTAGGTAGAGGTTCTCGCAAAATGAATATTAAATATGTAGGGCCGTATTGTGAATTATGTGGATAATGTTTTTGCTTTCTATTTTTTTTTAAAAAAAATAATTATTACTTACAATAATCCAACGGGTATCCTCGTATGTGCCCATCCTACAAGTGATAAAATGATAAGTACCAGTCTACCATCAAGTTTGTAGGATAGAAACTATTTAGTATACATTGTTTTTGTCTTAATTTCTAGTTTTGGTATCCATCTAAATCGATACTCCATTATGTTAATTATTTCATTTCTTTCTTTTGACATCTACATCACTTTTTAATGTGGTTACCACTTGCTATAATCATACTTCACTTAGCATTTTATTTGAACTTAGTGAAAGTGAAATTTTTCCTAATAATTGGTCTAAAAATTGAAGAAGATTAAAGCCAAGAAATTGAGTTCTTCCTTCTTTCTTCCAACTTTGAAAGTACCGATAGATACTATCATATAAAAAGAAGAGGTGGTCTGACTAACTCAATGAAGTGAATTTTTCAAAAACATGCTCAGAAAAATGAGAAAAATGGAGTTTTTGAAAAGAAAAATTAACAGATATTTAAAGATAAATTTTTGAAATTTGGTTCAAAATTTATGGTCAAATATTAACTTATATTTATATATATACCTCTTCTAAAATGCTAATGAGAATTAGAATTTGCAGAGAGAAGAAATGGCAAAAGAATCCTACGATCAAGCCATTGCTGCA</genome_strand>
        <mrna_strand>AATATTACTAGTGAGTAACAAAGCAGTTTTTAGGGCATGCAAAAGCCAAAGGAAGCTCATTGAGAAATGTCAACTGCTTCCATTTACAATTGCCTTACTATCTCCCCTGCTCAAGCTTCCCTTAAGAAACCTACTCGTCCCGTTGCCTTCGCAAGGCTTGGCAACTCTTCTTCTTCTTCTTCTATTCCAAGTCTCATCAGAAACAAGCCCGTCTTCGCTGCCCCTACTCCCATCATCAACCCCATTGTG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGAGAAGAAATGGCAAAAGAATCCTTCGATCTGGCCATTGCTGCA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0236E02-u8qcS/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E728537" ref_strand="+" ref_description="SGN-E728537 [LA18AF03]">
      <seq>ctattactagttagtaacaaagtagtataaagggcaagcaaaagctaaaggaagctcattgagaaatgtcaactgcttccattaacaattgccttactctctcccctgctcaagcttcccttaagaaacctactcgtcccgttgccttcgcaaggcttggcaactcttcttcttcttcttctattccaagtctcatcagaaacgagcccgtctttgctgcccctactcccatcatcaaccccattgtgagagaagaaatggcaaaagaatcctacgatcaagccattgctgcactcgagaaactcctcagcgagaaagcagaacttggaccagttgctgcagcaagagttgaccagatcactgctgaattgaaatcagcagacggcggcaaggcattcgaccctgttgagcacatgaaagctggctttattcatttcaagactgagaaatatgacacaaacccagccttatatggtgagctagcaaagggccagagccctaagttcatggttttcgcgtgctctgactcacgagtctgcccatcccatgtcctcaacttccaacctggtgaggcattcatggttcgtaacatcgccaacatggtccctgcttatgacaaggtcaggtactctggagtaggagcagccattgaatacgccgttcttcatcttaaggtggagaacatcgttgtcattggccacagtgcttgtggaggtatcaaaggtctcatgtcactacctgaagatggtagtgaatcaactgcctttattgaggattgggtaaaaatttgtttacctgccaaggcaaaggttctggccgatcacggagggaaagaatttgcacatcaatgcacagcttgtgagaaggaagctgtgaacgtttcacttggaaatctgc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0236E02-u8qcS/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0236E02.1" temp_strand="+" temp_description="C02HBa0236E02.1  AC215430.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0236E02 sequenced_by:kribb upload_account_name:korea">
        <position start="14635" stop="18124"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="14935" g_stop="15182" g_length="248"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="248" r_length="248" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="15183" i_stop="16379" i_length="1197">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.971" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="16380" g_stop="16441" g_length="62"/>
          <reference_exon_boundary r_type="cDNA" r_start="249" r_stop="310" r_length="62" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="16442" i_stop="16813" i_length="372">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="16814" g_stop="16957" g_length="144"/>
          <reference_exon_boundary r_type="cDNA" r_start="311" r_stop="454" r_length="144" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="16958" i_stop="17055" i_length="98">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="17056" g_stop="17104" g_length="49"/>
          <reference_exon_boundary r_type="cDNA" r_start="455" r_stop="503" r_length="49" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="17105" i_stop="17188" i_length="84">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.961" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="17189" g_stop="17305" g_length="117"/>
          <reference_exon_boundary r_type="cDNA" r_start="504" r_stop="620" r_length="117" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="17306" i_stop="17390" i_length="85">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.979" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="17391" g_stop="17530" g_length="140"/>
          <reference_exon_boundary r_type="cDNA" r_start="621" r_stop="760" r_length="140" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="17531" i_stop="17607" i_length="77">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.948" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="17608" g_stop="17713" g_length="106"/>
          <reference_exon_boundary r_type="cDNA" r_start="761" r_stop="866" r_length="106" r_score="1.000"/>
        </exon>
        <intron i_serial="7">
          <gDNA_intron_boundary i_start="17714" i_stop="17793" i_length="80">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="8">
          <gDNA_exon_boundary g_start="17794" g_stop="17824" g_length="31"/>
          <reference_exon_boundary r_type="cDNA" r_start="867" r_stop="897" r_length="31" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0236E02.1" gen_strand="+" ref_id="SGN-E728537" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>897</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0236E02.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E728537" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="14935" e_stop="15182"/>
          <exon e_start="16380" e_stop="16441"/>
          <exon e_start="16814" e_stop="16957"/>
          <exon e_start="17056" e_stop="17104"/>
          <exon e_start="17189" e_stop="17305"/>
          <exon e_start="17391" e_stop="17530"/>
          <exon e_start="17608" e_stop="17713"/>
          <exon e_start="17794" e_stop="17824"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTATTACTAGTTAGTAACAAAGTAGTATAAAGGGCAAGCAAAAGCTAAAGGAAGCTCATTGAGAAATGTCAACTGCTTCCATTAACAATTGCCTTACTCTCTCCCCTGCTCAAGCTTCCCTTAAGAAACCTACTCGTCCCGTTGCCTTCGCAAGGCTTGGCAACTCTTCTTCTTCTTCTTCTATTCCAAGTCTCATCAGAAACGAGCCCGTCTTTGCTGCCCCTACTCCCATCATCAACCCCATTGTGGTACGAATTTTTAACTTACATCACTGTATTTTAATCTGTTATAACAAGTTATTTATATTTGACGTTACTTAATTTATTTTTTAAGCAAGACATTTTTTTTGTCTTATCGTATTTTTTGTAACGACTTGTGTCCATGCATGCTAGTTCACGTGAAAATTCAATATTGGCATAGTTCTAAACTTTAGTTTCTAACCACCTTTATTATTGGTATTGTTATTTTTGGCCATGAATCTCCTGAAGTTAGGTGAATTGATCATGTCGCTCTAAATTGTACACGTCTATTGCGTGTACTCAATGACATATAATATATTATTGCAATCCTAAAATAAGTGTTATTTTAATTTATTTTGAACTCATTAAAATAAATATGATATTTTACTGAGTTACTTATATTTATTACTTTGATTTTTTTGAGTACTAATTTGTATTTTGAAACTTTTAAGATGACGAGAGGGTGGAAATAACAAATTAAATTTGAAAATGAACCAAAATAGAGGTGGCAATTAGGTAGAGGTTCTCGCAAAATGAATATTAAATATGTAGGGCCGTATTGTGAATTATGTGGATAATGTTTTTGCTTTCTATTTTTTTTTAAAAAAAATAATTATTACTTACAATAATCCAACGGGTATCCTCGTATGTGCCCATCCTACAAGTGATAAAATGATAAGTACCAGTCTACCATCAAGTTTGTAGGATAGAAACTATTTAGTATACATTGTTTTTGTCTTAATTTCTAGTTTTGGTATCCATCTAAATCGATACTCCATTATGTTAATTATTTCATTTCTTTCTTTTGACATCTACATCACTTTTTAATGTGGTTACCACTTGCTATAATCATACTTCACTTAGCATTTTATTTGAACTTAGTGAAAGTGAAATTTTTCCTAATAATTGGTCTAAAAATTGAAGAAGATTAAAGCCAAGAAATTGAGTTCTTCCTTCTTTCTTCCAACTTTGAAAGTACCGATAGATACTATCATATAAAAAGAAGAGGTGGTCTGACTAACTCAATGAAGTGAATTTTTCAAAAACATGCTCAGAAAAATGAGAAAAATGGAGTTTTTGAAAAGAAAAATTAACAGATATTTAAAGATAAATTTTTGAAATTTGGTTCAAAATTTATGGTCAAATATTAACTTATATTTATATATATACCTCTTCTAAAATGCTAATGAGAATTAGAATTTGCAGAGAGAAGAAATGGCAAAAGAATCCTACGATCAAGCCATTGCTGCACTCGAGAAACTCCTCAGGTTTGTACTCTCTCTACGACTCTACCTTCTAAATCACACTACTTTTTTCTCGATCAAGTGGGGCCCAAAAAATATACATACACCCACACATACGTAGACAAAAAAAATGTTAAAATTTGCGAATATGCAGAGAAAACATAATATAATCATGCAATGTTTACTCGTAAAATTCAATTTCCCGGCAATGAACATGTTACTTGGTTTCGAGTTCTCCAGATCTGCATTAATTTTACCATTCTATCATCATTTTTTTACCCCATATCTGCATTAATTTATCATGGTAATGGTGCTCAAACCACAAATCTTTTTTTTTTCTACCTGAAATATTGCTTCAATAATAATAATGGTCTAAATTATTTTCTGCAATTACAGCGAGAAAGCAGAACTTGGACCAGTTGCTGCAGCAAGAGTTGACCAGATCACTGCTGAATTGAAATCAGCAGACGGCGGCAAGGCATTCGACCCTGTTGAGCACATGAAAGCTGGCTTTATTCATTTCAAGACTGAGAAATATGAGTAAGCAAATTCATTCAAATTAAAATTTCTGCATATTTGATGTTGTAACATTATTAGTGTCTGATAATTTTTCCTGTTTTCTATTTATGTACCAACAGCACAAACCCAGCCTTATATGGTGAGCTAGCAAAGGGCCAGAGCCCTAAGGTACAAATTCCTTGTTAATTTGTTGTCTAATTTTATGATTTGTACGGTTTCTGATGAGTTCTATTGTCCTAAATGTGTAAACAGTTCATGGTTTTCGCGTGCTCTGACTCACGAGTCTGCCCATCCCATGTCCTCAACTTCCAACCTGGTGAGGCATTCATGGTTCGTAACATCGCCAACATGGTCCCTGCTTATGACAAGGTCAGTTACAAATCGATCAACTAGTCGATTATTTCGCTCTGGAATTGTGTTTTTTAAAAATAAAGATGGAATTGAATTTTTACAGGTCAGGTACTCTGGAGTAGGAGCAGCCATTGAATACGCCGTTCTTCATCTTAAGGTGGAGAACATCGTTGTCATTGGCCACAGTGCTTGTGGAGGTATCAAAGGTCTCATGTCACTACCTGAAGATGGTAGTGAATCAACGTACGTCACTCTATAAATCTATTCATTCAAAACACTTATCCTTAACAGATGATTGATTAATAATCTAATATACGCAGTGCCTTTATTGAGGATTGGGTAAAAATTTGTTTACCTGCCAAGGCAAAGGTTCTGGCCGATCACGGAGGGAAAGAATTTGCACATCAATGCACAGCTTGTGAGAAGGTAAAATTCAAATTTAACTTTTTGATTATCAATTAATTACATATATAGCAGTATTTTATAATTGATGAAAAATGTTGCAGGAAGCTGTGAACGTTTCACTTGGAAATCTGC</genome_strand>
        <mrna_strand>CTATTACTAGTTAGTAACAAAGTAGTATAAAGGGCAAGCAAAAGCTAAAGGAAGCTCATTGAGAAATGTCAACTGCTTCCATTAACAATTGCCTTACTCTCTCCCCTGCTCAAGCTTCCCTTAAGAAACCTACTCGTCCCGTTGCCTTCGCAAGGCTTGGCAACTCTTCTTCTTCTTCTTCTATTCCAAGTCTCATCAGAAACGAGCCCGTCTTTGCTGCCCCTACTCCCATCATCAACCCCATTGTG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGAGAAGAAATGGCAAAAGAATCCTACGATCAAGCCATTGCTGCACTCGAGAAACTCCTCAG....................................................................................................................................................................................................................................................................................................................................................................................CGAGAAAGCAGAACTTGGACCAGTTGCTGCAGCAAGAGTTGACCAGATCACTGCTGAATTGAAATCAGCAGACGGCGGCAAGGCATTCGACCCTGTTGAGCACATGAAAGCTGGCTTTATTCATTTCAAGACTGAGAAATATGA..................................................................................................CACAAACCCAGCCTTATATGGTGAGCTAGCAAAGGGCCAGAGCCCTAAG....................................................................................TTCATGGTTTTCGCGTGCTCTGACTCACGAGTCTGCCCATCCCATGTCCTCAACTTCCAACCTGGTGAGGCATTCATGGTTCGTAACATCGCCAACATGGTCCCTGCTTATGACAAG.....................................................................................GTCAGGTACTCTGGAGTAGGAGCAGCCATTGAATACGCCGTTCTTCATCTTAAGGTGGAGAACATCGTTGTCATTGGCCACAGTGCTTGTGGAGGTATCAAAGGTCTCATGTCACTACCTGAAGATGGTAGTGAATCAAC.............................................................................TGCCTTTATTGAGGATTGGGTAAAAATTTGTTTACCTGCCAAGGCAAAGGTTCTGGCCGATCACGGAGGGAAAGAATTTGCACATCAATGCACAGCTTGTGAGAAG................................................................................GAAGCTGTGAACGTTTCACTTGGAAATCTGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0236E02-u8qcS/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E726875" ref_strand="+" ref_description="SGN-E726875 [LA13AC12]">
      <seq>ctattactagttagtaacaaagtagtataaagggcaagcaaaagctaaaggaagctcattgagaaatgtcaactgcttccattaacaattgccttactctctcccctgctcaagcttcccttaagaaacctactcgtcccgttgccttcgcaaggcttggcaactcttcttcttcttcttctattccaagtctcatcaaaaacgagcccgtctttgctgcccctactcccatcatcaaccccattgtgagagaagaaatggcaaaagaatcctacgatcaagccattgctgcactcgagaaactcctcagcgagaaagcagaacttggaccagttgctgcagcaagagttgaccagatcactgctgaattgaaatcagcagacggcggcaaggcattcgaccctgttgagcacatgaaagctggctttattcatttcaagactgagaaatatgacacaaacccagccttatatggtgagctagcaaagggccagagccctaagttcatggttttcgcgtgctctgactcacgagtctgcccatcccatgtcctcaacttccaacctggtgaggcattcatggttcgtaacatcgccaacatggtccctgcttatgacaaggtcaggtactctggagtaggagcagccattgaatacgccgttcttcatcttaaggtggagaacatcgttgtcattggccacagtgcttgtggaggtatcagaggtctcatgtcactacctgaagatggtagtgaatcaactgcctttattgaggattgcgtaaaaatttgtttacctgccaaggcaaaggttctggccgatcacggaggggaaacaatttgcacatcaatgca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0236E02-u8qcS/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0236E02.1" temp_strand="+" temp_description="C02HBa0236E02.1  AC215430.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0236E02 sequenced_by:kribb upload_account_name:korea">
        <position start="14635" stop="17999"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="14935" g_stop="15182" g_length="248"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="248" r_length="248" r_score="0.996"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="15183" i_stop="16379" i_length="1197">
            <donor d_prob="1.000" d_score="0.98"/>
            <acceptor a_prob="0.971" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="16380" g_stop="16441" g_length="62"/>
          <reference_exon_boundary r_type="cDNA" r_start="249" r_stop="310" r_length="62" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="16442" i_stop="16813" i_length="372">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="16814" g_stop="16957" g_length="144"/>
          <reference_exon_boundary r_type="cDNA" r_start="311" r_stop="454" r_length="144" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="16958" i_stop="17055" i_length="98">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="17056" g_stop="17104" g_length="49"/>
          <reference_exon_boundary r_type="cDNA" r_start="455" r_stop="503" r_length="49" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="17105" i_stop="17188" i_length="84">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.961" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="17189" g_stop="17305" g_length="117"/>
          <reference_exon_boundary r_type="cDNA" r_start="504" r_stop="620" r_length="117" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="17306" i_stop="17390" i_length="85">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.979" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="17391" g_stop="17530" g_length="140"/>
          <reference_exon_boundary r_type="cDNA" r_start="621" r_stop="760" r_length="140" r_score="0.993"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="17531" i_stop="17607" i_length="77">
            <donor d_prob="0.999" d_score="0.98"/>
            <acceptor a_prob="0.948" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="17608" g_stop="17699" g_length="92"/>
          <reference_exon_boundary r_type="cDNA" r_start="761" r_stop="853" r_length="93" r_score="0.957"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0236E02.1" gen_strand="+" ref_id="SGN-E726875" ref_strand="+">
        <total_alignment_score>0.993</total_alignment_score>
        <cumulative_length_of_scored_exons>852</cumulative_length_of_scored_exons>
        <coverage percentage="0.999" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0236E02.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E726875" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="14935" e_stop="15182"/>
          <exon e_start="16380" e_stop="16441"/>
          <exon e_start="16814" e_stop="16957"/>
          <exon e_start="17056" e_stop="17104"/>
          <exon e_start="17189" e_stop="17305"/>
          <exon e_start="17391" e_stop="17530"/>
          <exon e_start="17608" e_stop="17699"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTATTACTAGTTAGTAACAAAGTAGTATAAAGGGCAAGCAAAAGCTAAAGGAAGCTCATTGAGAAATGTCAACTGCTTCCATTAACAATTGCCTTACTCTCTCCCCTGCTCAAGCTTCCCTTAAGAAACCTACTCGTCCCGTTGCCTTCGCAAGGCTTGGCAACTCTTCTTCTTCTTCTTCTATTCCAAGTCTCATCAGAAACGAGCCCGTCTTTGCTGCCCCTACTCCCATCATCAACCCCATTGTGGTACGAATTTTTAACTTACATCACTGTATTTTAATCTGTTATAACAAGTTATTTATATTTGACGTTACTTAATTTATTTTTTAAGCAAGACATTTTTTTTGTCTTATCGTATTTTTTGTAACGACTTGTGTCCATGCATGCTAGTTCACGTGAAAATTCAATATTGGCATAGTTCTAAACTTTAGTTTCTAACCACCTTTATTATTGGTATTGTTATTTTTGGCCATGAATCTCCTGAAGTTAGGTGAATTGATCATGTCGCTCTAAATTGTACACGTCTATTGCGTGTACTCAATGACATATAATATATTATTGCAATCCTAAAATAAGTGTTATTTTAATTTATTTTGAACTCATTAAAATAAATATGATATTTTACTGAGTTACTTATATTTATTACTTTGATTTTTTTGAGTACTAATTTGTATTTTGAAACTTTTAAGATGACGAGAGGGTGGAAATAACAAATTAAATTTGAAAATGAACCAAAATAGAGGTGGCAATTAGGTAGAGGTTCTCGCAAAATGAATATTAAATATGTAGGGCCGTATTGTGAATTATGTGGATAATGTTTTTGCTTTCTATTTTTTTTTAAAAAAAATAATTATTACTTACAATAATCCAACGGGTATCCTCGTATGTGCCCATCCTACAAGTGATAAAATGATAAGTACCAGTCTACCATCAAGTTTGTAGGATAGAAACTATTTAGTATACATTGTTTTTGTCTTAATTTCTAGTTTTGGTATCCATCTAAATCGATACTCCATTATGTTAATTATTTCATTTCTTTCTTTTGACATCTACATCACTTTTTAATGTGGTTACCACTTGCTATAATCATACTTCACTTAGCATTTTATTTGAACTTAGTGAAAGTGAAATTTTTCCTAATAATTGGTCTAAAAATTGAAGAAGATTAAAGCCAAGAAATTGAGTTCTTCCTTCTTTCTTCCAACTTTGAAAGTACCGATAGATACTATCATATAAAAAGAAGAGGTGGTCTGACTAACTCAATGAAGTGAATTTTTCAAAAACATGCTCAGAAAAATGAGAAAAATGGAGTTTTTGAAAAGAAAAATTAACAGATATTTAAAGATAAATTTTTGAAATTTGGTTCAAAATTTATGGTCAAATATTAACTTATATTTATATATATACCTCTTCTAAAATGCTAATGAGAATTAGAATTTGCAGAGAGAAGAAATGGCAAAAGAATCCTACGATCAAGCCATTGCTGCACTCGAGAAACTCCTCAGGTTTGTACTCTCTCTACGACTCTACCTTCTAAATCACACTACTTTTTTCTCGATCAAGTGGGGCCCAAAAAATATACATACACCCACACATACGTAGACAAAAAAAATGTTAAAATTTGCGAATATGCAGAGAAAACATAATATAATCATGCAATGTTTACTCGTAAAATTCAATTTCCCGGCAATGAACATGTTACTTGGTTTCGAGTTCTCCAGATCTGCATTAATTTTACCATTCTATCATCATTTTTTTACCCCATATCTGCATTAATTTATCATGGTAATGGTGCTCAAACCACAAATCTTTTTTTTTTCTACCTGAAATATTGCTTCAATAATAATAATGGTCTAAATTATTTTCTGCAATTACAGCGAGAAAGCAGAACTTGGACCAGTTGCTGCAGCAAGAGTTGACCAGATCACTGCTGAATTGAAATCAGCAGACGGCGGCAAGGCATTCGACCCTGTTGAGCACATGAAAGCTGGCTTTATTCATTTCAAGACTGAGAAATATGAGTAAGCAAATTCATTCAAATTAAAATTTCTGCATATTTGATGTTGTAACATTATTAGTGTCTGATAATTTTTCCTGTTTTCTATTTATGTACCAACAGCACAAACCCAGCCTTATATGGTGAGCTAGCAAAGGGCCAGAGCCCTAAGGTACAAATTCCTTGTTAATTTGTTGTCTAATTTTATGATTTGTACGGTTTCTGATGAGTTCTATTGTCCTAAATGTGTAAACAGTTCATGGTTTTCGCGTGCTCTGACTCACGAGTCTGCCCATCCCATGTCCTCAACTTCCAACCTGGTGAGGCATTCATGGTTCGTAACATCGCCAACATGGTCCCTGCTTATGACAAGGTCAGTTACAAATCGATCAACTAGTCGATTATTTCGCTCTGGAATTGTGTTTTTTAAAAATAAAGATGGAATTGAATTTTTACAGGTCAGGTACTCTGGAGTAGGAGCAGCCATTGAATACGCCGTTCTTCATCTTAAGGTGGAGAACATCGTTGTCATTGGCCACAGTGCTTGTGGAGGTATCAAAGGTCTCATGTCACTACCTGAAGATGGTAGTGAATCAACGTACGTCACTCTATAAATCTATTCATTCAAAACACTTATCCTTAACAGATGATTGATTAATAATCTAATATACGCAGTGCCTTTATTGAGGATTGGGTAAAAATTTGTTTACCTGCCAAGGCAAAGGTTCTGGCCGATCACGGA-GGGAAAGAATTTGCACATCAATGCA</genome_strand>
        <mrna_strand>CTATTACTAGTTAGTAACAAAGTAGTATAAAGGGCAAGCAAAAGCTAAAGGAAGCTCATTGAGAAATGTCAACTGCTTCCATTAACAATTGCCTTACTCTCTCCCCTGCTCAAGCTTCCCTTAAGAAACCTACTCGTCCCGTTGCCTTCGCAAGGCTTGGCAACTCTTCTTCTTCTTCTTCTATTCCAAGTCTCATCAAAAACGAGCCCGTCTTTGCTGCCCCTACTCCCATCATCAACCCCATTGTG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGAGAAGAAATGGCAAAAGAATCCTACGATCAAGCCATTGCTGCACTCGAGAAACTCCTCAG....................................................................................................................................................................................................................................................................................................................................................................................CGAGAAAGCAGAACTTGGACCAGTTGCTGCAGCAAGAGTTGACCAGATCACTGCTGAATTGAAATCAGCAGACGGCGGCAAGGCATTCGACCCTGTTGAGCACATGAAAGCTGGCTTTATTCATTTCAAGACTGAGAAATATGA..................................................................................................CACAAACCCAGCCTTATATGGTGAGCTAGCAAAGGGCCAGAGCCCTAAG....................................................................................TTCATGGTTTTCGCGTGCTCTGACTCACGAGTCTGCCCATCCCATGTCCTCAACTTCCAACCTGGTGAGGCATTCATGGTTCGTAACATCGCCAACATGGTCCCTGCTTATGACAAG.....................................................................................GTCAGGTACTCTGGAGTAGGAGCAGCCATTGAATACGCCGTTCTTCATCTTAAGGTGGAGAACATCGTTGTCATTGGCCACAGTGCTTGTGGAGGTATCAGAGGTCTCATGTCACTACCTGAAGATGGTAGTGAATCAAC.............................................................................TGCCTTTATTGAGGATTGCGTAAAAATTTGTTTACCTGCCAAGGCAAAGGTTCTGGCCGATCACGGAGGGGAAACAATTTGCACATCAATGCA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0236E02-u8qcS/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E730069" ref_strand="+" ref_description="SGN-E730069 [LA22DH04]">
      <seq>ctattactagttagtaacaaagtagtataaagggcaagcaaaagctaaaggaagctcattgagaaatgtcaactgcttccattaacaattgccttactctctcccctgctcaagcttcccttaagaaacctactcgtcccgttgccttcgcaaggcttggcaactcttcttcttcttcttctattccaagtctcatcagaaacgagcccgtctttgctgcccctactcccatcatcaaccccattgtgagagaagaaatggcaaaagaatcctacgatcaagccattgctgcactcgagaaactcctcagcgagaaagcagaacttggaccagttgctgcagcaagagttgaccagatcactgctgaattgaaatcagcagacggcggcaaggcattcgaccctgttgagcacatgaaagctggctttattcatttcaagactgagaaatatgacacaaacccagccttatatggtgagctagcaaagggccagagccctaagttcatggttttcgcgtgctctgactcacgagtctgcccatcccatgtcctcaacttccaacctggtgaggcattcatggttcgtaacatcgccaacatggtccctgcttatgacaaggtcaggtactctggagtaggagcagccattgaatacgccgttcttcatcttaaggtggagaacatcgttgtcattggccacagtgcttgtggaggtatcaaaggtctcatgtcactacctgaagatggtagtgaatcaactgcctttattgaggattgnngtaaaatttgtttacctgccaaggcaaaagttctggccgatcacggag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0236E02-u8qcS/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0236E02.1" temp_strand="+" temp_description="C02HBa0236E02.1  AC215430.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0236E02 sequenced_by:kribb upload_account_name:korea">
        <position start="14635" stop="17975"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="14935" g_stop="15182" g_length="248"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="248" r_length="248" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="15183" i_stop="16379" i_length="1197">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.971" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="16380" g_stop="16441" g_length="62"/>
          <reference_exon_boundary r_type="cDNA" r_start="249" r_stop="310" r_length="62" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="16442" i_stop="16813" i_length="372">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="16814" g_stop="16957" g_length="144"/>
          <reference_exon_boundary r_type="cDNA" r_start="311" r_stop="454" r_length="144" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="16958" i_stop="17055" i_length="98">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="17056" g_stop="17104" g_length="49"/>
          <reference_exon_boundary r_type="cDNA" r_start="455" r_stop="503" r_length="49" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="17105" i_stop="17188" i_length="84">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.961" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="17189" g_stop="17305" g_length="117"/>
          <reference_exon_boundary r_type="cDNA" r_start="504" r_stop="620" r_length="117" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="17306" i_stop="17390" i_length="85">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.979" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="17391" g_stop="17530" g_length="140"/>
          <reference_exon_boundary r_type="cDNA" r_start="621" r_stop="760" r_length="140" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="17531" i_stop="17607" i_length="77">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.948" a_score="0.90"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="17608" g_stop="17675" g_length="68"/>
          <reference_exon_boundary r_type="cDNA" r_start="761" r_stop="828" r_length="68" r_score="0.926"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0236E02.1" gen_strand="+" ref_id="SGN-E730069" ref_strand="+">
        <total_alignment_score>0.994</total_alignment_score>
        <cumulative_length_of_scored_exons>828</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0236E02.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E730069" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="14935" e_stop="15182"/>
          <exon e_start="16380" e_stop="16441"/>
          <exon e_start="16814" e_stop="16957"/>
          <exon e_start="17056" e_stop="17104"/>
          <exon e_start="17189" e_stop="17305"/>
          <exon e_start="17391" e_stop="17530"/>
          <exon e_start="17608" e_stop="17675"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTATTACTAGTTAGTAACAAAGTAGTATAAAGGGCAAGCAAAAGCTAAAGGAAGCTCATTGAGAAATGTCAACTGCTTCCATTAACAATTGCCTTACTCTCTCCCCTGCTCAAGCTTCCCTTAAGAAACCTACTCGTCCCGTTGCCTTCGCAAGGCTTGGCAACTCTTCTTCTTCTTCTTCTATTCCAAGTCTCATCAGAAACGAGCCCGTCTTTGCTGCCCCTACTCCCATCATCAACCCCATTGTGGTACGAATTTTTAACTTACATCACTGTATTTTAATCTGTTATAACAAGTTATTTATATTTGACGTTACTTAATTTATTTTTTAAGCAAGACATTTTTTTTGTCTTATCGTATTTTTTGTAACGACTTGTGTCCATGCATGCTAGTTCACGTGAAAATTCAATATTGGCATAGTTCTAAACTTTAGTTTCTAACCACCTTTATTATTGGTATTGTTATTTTTGGCCATGAATCTCCTGAAGTTAGGTGAATTGATCATGTCGCTCTAAATTGTACACGTCTATTGCGTGTACTCAATGACATATAATATATTATTGCAATCCTAAAATAAGTGTTATTTTAATTTATTTTGAACTCATTAAAATAAATATGATATTTTACTGAGTTACTTATATTTATTACTTTGATTTTTTTGAGTACTAATTTGTATTTTGAAACTTTTAAGATGACGAGAGGGTGGAAATAACAAATTAAATTTGAAAATGAACCAAAATAGAGGTGGCAATTAGGTAGAGGTTCTCGCAAAATGAATATTAAATATGTAGGGCCGTATTGTGAATTATGTGGATAATGTTTTTGCTTTCTATTTTTTTTTAAAAAAAATAATTATTACTTACAATAATCCAACGGGTATCCTCGTATGTGCCCATCCTACAAGTGATAAAATGATAAGTACCAGTCTACCATCAAGTTTGTAGGATAGAAACTATTTAGTATACATTGTTTTTGTCTTAATTTCTAGTTTTGGTATCCATCTAAATCGATACTCCATTATGTTAATTATTTCATTTCTTTCTTTTGACATCTACATCACTTTTTAATGTGGTTACCACTTGCTATAATCATACTTCACTTAGCATTTTATTTGAACTTAGTGAAAGTGAAATTTTTCCTAATAATTGGTCTAAAAATTGAAGAAGATTAAAGCCAAGAAATTGAGTTCTTCCTTCTTTCTTCCAACTTTGAAAGTACCGATAGATACTATCATATAAAAAGAAGAGGTGGTCTGACTAACTCAATGAAGTGAATTTTTCAAAAACATGCTCAGAAAAATGAGAAAAATGGAGTTTTTGAAAAGAAAAATTAACAGATATTTAAAGATAAATTTTTGAAATTTGGTTCAAAATTTATGGTCAAATATTAACTTATATTTATATATATACCTCTTCTAAAATGCTAATGAGAATTAGAATTTGCAGAGAGAAGAAATGGCAAAAGAATCCTACGATCAAGCCATTGCTGCACTCGAGAAACTCCTCAGGTTTGTACTCTCTCTACGACTCTACCTTCTAAATCACACTACTTTTTTCTCGATCAAGTGGGGCCCAAAAAATATACATACACCCACACATACGTAGACAAAAAAAATGTTAAAATTTGCGAATATGCAGAGAAAACATAATATAATCATGCAATGTTTACTCGTAAAATTCAATTTCCCGGCAATGAACATGTTACTTGGTTTCGAGTTCTCCAGATCTGCATTAATTTTACCATTCTATCATCATTTTTTTACCCCATATCTGCATTAATTTATCATGGTAATGGTGCTCAAACCACAAATCTTTTTTTTTTCTACCTGAAATATTGCTTCAATAATAATAATGGTCTAAATTATTTTCTGCAATTACAGCGAGAAAGCAGAACTTGGACCAGTTGCTGCAGCAAGAGTTGACCAGATCACTGCTGAATTGAAATCAGCAGACGGCGGCAAGGCATTCGACCCTGTTGAGCACATGAAAGCTGGCTTTATTCATTTCAAGACTGAGAAATATGAGTAAGCAAATTCATTCAAATTAAAATTTCTGCATATTTGATGTTGTAACATTATTAGTGTCTGATAATTTTTCCTGTTTTCTATTTATGTACCAACAGCACAAACCCAGCCTTATATGGTGAGCTAGCAAAGGGCCAGAGCCCTAAGGTACAAATTCCTTGTTAATTTGTTGTCTAATTTTATGATTTGTACGGTTTCTGATGAGTTCTATTGTCCTAAATGTGTAAACAGTTCATGGTTTTCGCGTGCTCTGACTCACGAGTCTGCCCATCCCATGTCCTCAACTTCCAACCTGGTGAGGCATTCATGGTTCGTAACATCGCCAACATGGTCCCTGCTTATGACAAGGTCAGTTACAAATCGATCAACTAGTCGATTATTTCGCTCTGGAATTGTGTTTTTTAAAAATAAAGATGGAATTGAATTTTTACAGGTCAGGTACTCTGGAGTAGGAGCAGCCATTGAATACGCCGTTCTTCATCTTAAGGTGGAGAACATCGTTGTCATTGGCCACAGTGCTTGTGGAGGTATCAAAGGTCTCATGTCACTACCTGAAGATGGTAGTGAATCAACGTACGTCACTCTATAAATCTATTCATTCAAAACACTTATCCTTAACAGATGATTGATTAATAATCTAATATACGCAGTGCCTTTATTGAGGATTGGGTAAAAATTTGTTTACCTGCCAAGGCAAAGGTTCTGGCCGATCACGGAG</genome_strand>
        <mrna_strand>CTATTACTAGTTAGTAACAAAGTAGTATAAAGGGCAAGCAAAAGCTAAAGGAAGCTCATTGAGAAATGTCAACTGCTTCCATTAACAATTGCCTTACTCTCTCCCCTGCTCAAGCTTCCCTTAAGAAACCTACTCGTCCCGTTGCCTTCGCAAGGCTTGGCAACTCTTCTTCTTCTTCTTCTATTCCAAGTCTCATCAGAAACGAGCCCGTCTTTGCTGCCCCTACTCCCATCATCAACCCCATTGTG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGAGAAGAAATGGCAAAAGAATCCTACGATCAAGCCATTGCTGCACTCGAGAAACTCCTCAG....................................................................................................................................................................................................................................................................................................................................................................................CGAGAAAGCAGAACTTGGACCAGTTGCTGCAGCAAGAGTTGACCAGATCACTGCTGAATTGAAATCAGCAGACGGCGGCAAGGCATTCGACCCTGTTGAGCACATGAAAGCTGGCTTTATTCATTTCAAGACTGAGAAATATGA..................................................................................................CACAAACCCAGCCTTATATGGTGAGCTAGCAAAGGGCCAGAGCCCTAAG....................................................................................TTCATGGTTTTCGCGTGCTCTGACTCACGAGTCTGCCCATCCCATGTCCTCAACTTCCAACCTGGTGAGGCATTCATGGTTCGTAACATCGCCAACATGGTCCCTGCTTATGACAAG.....................................................................................GTCAGGTACTCTGGAGTAGGAGCAGCCATTGAATACGCCGTTCTTCATCTTAAGGTGGAGAACATCGTTGTCATTGGCCACAGTGCTTGTGGAGGTATCAAAGGTCTCATGTCACTACCTGAAGATGGTAGTGAATCAAC.............................................................................TGCCTTTATTGAGGATTGNNGTAAAATTTGTTTACCTGCCAAGGCAAAAGTTCTGGCCGATCACGGAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0236E02-u8qcS/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E735839" ref_strand="+" ref_description="SGN-E735839 [LC03BD05]">
      <seq>cgattactagttagtaacaaagtagtataaagggcaagcaaaagctaaaggaagctcattgagaaatgtcaactgcttccattaacaattgccttactctctcccctgctcaagcttcccttaagaaacctactcgtcccgttgccttcgcaaggcttggcaactcttcttcttcttcttctattccaagtctcatcagaaacgagcccgtctttgctgcccctactcccatcatcaaccccattgtgagagaagaaatggcaaaagaatcctacgatcaagccattgctgcactcgagaaactcctcagcgagaaagcagaacttggaccagttgctgcagcaagagttgaccagatcactgctgaattgaaatcagcagacggcggcaaggcattcgaccctgttgagcacatgaaagctggctttattcatttcaagactgagaaatatgacacaaacccagccttatatggtgagctagcaaagggccagagccctaagttcatggttttcgcgtgctctgactcacgagtctgcccatcccatgtcctcaacttccaacctggtgaggcattcatggttcataacatcgccaacatggtccctgcttatgacaaggtcaggtactctggagtaggagcagccattgaatacgccgttcttcatcttaaggtggaaaacatcgttgtcattggc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0236E02-u8qcS/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0236E02.1" temp_strand="+" temp_description="C02HBa0236E02.1  AC215430.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0236E02 sequenced_by:kribb upload_account_name:korea">
        <position start="14635" stop="17768"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="14935" g_stop="15182" g_length="248"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="248" r_length="248" r_score="0.996"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="15183" i_stop="16379" i_length="1197">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.971" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="16380" g_stop="16441" g_length="62"/>
          <reference_exon_boundary r_type="cDNA" r_start="249" r_stop="310" r_length="62" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="16442" i_stop="16813" i_length="372">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="16814" g_stop="16957" g_length="144"/>
          <reference_exon_boundary r_type="cDNA" r_start="311" r_stop="454" r_length="144" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="16958" i_stop="17055" i_length="98">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="17056" g_stop="17104" g_length="49"/>
          <reference_exon_boundary r_type="cDNA" r_start="455" r_stop="503" r_length="49" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="17105" i_stop="17188" i_length="84">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.961" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="17189" g_stop="17305" g_length="117"/>
          <reference_exon_boundary r_type="cDNA" r_start="504" r_stop="620" r_length="117" r_score="0.991"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="17306" i_stop="17390" i_length="85">
            <donor d_prob="0.999" d_score="0.98"/>
            <acceptor a_prob="0.979" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="17391" g_stop="17468" g_length="78"/>
          <reference_exon_boundary r_type="cDNA" r_start="621" r_stop="698" r_length="78" r_score="0.987"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0236E02.1" gen_strand="+" ref_id="SGN-E735839" ref_strand="+">
        <total_alignment_score>0.995</total_alignment_score>
        <cumulative_length_of_scored_exons>698</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0236E02.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E735839" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="14935" e_stop="15182"/>
          <exon e_start="16380" e_stop="16441"/>
          <exon e_start="16814" e_stop="16957"/>
          <exon e_start="17056" e_stop="17104"/>
          <exon e_start="17189" e_stop="17305"/>
          <exon e_start="17391" e_stop="17468"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTATTACTAGTTAGTAACAAAGTAGTATAAAGGGCAAGCAAAAGCTAAAGGAAGCTCATTGAGAAATGTCAACTGCTTCCATTAACAATTGCCTTACTCTCTCCCCTGCTCAAGCTTCCCTTAAGAAACCTACTCGTCCCGTTGCCTTCGCAAGGCTTGGCAACTCTTCTTCTTCTTCTTCTATTCCAAGTCTCATCAGAAACGAGCCCGTCTTTGCTGCCCCTACTCCCATCATCAACCCCATTGTGGTACGAATTTTTAACTTACATCACTGTATTTTAATCTGTTATAACAAGTTATTTATATTTGACGTTACTTAATTTATTTTTTAAGCAAGACATTTTTTTTGTCTTATCGTATTTTTTGTAACGACTTGTGTCCATGCATGCTAGTTCACGTGAAAATTCAATATTGGCATAGTTCTAAACTTTAGTTTCTAACCACCTTTATTATTGGTATTGTTATTTTTGGCCATGAATCTCCTGAAGTTAGGTGAATTGATCATGTCGCTCTAAATTGTACACGTCTATTGCGTGTACTCAATGACATATAATATATTATTGCAATCCTAAAATAAGTGTTATTTTAATTTATTTTGAACTCATTAAAATAAATATGATATTTTACTGAGTTACTTATATTTATTACTTTGATTTTTTTGAGTACTAATTTGTATTTTGAAACTTTTAAGATGACGAGAGGGTGGAAATAACAAATTAAATTTGAAAATGAACCAAAATAGAGGTGGCAATTAGGTAGAGGTTCTCGCAAAATGAATATTAAATATGTAGGGCCGTATTGTGAATTATGTGGATAATGTTTTTGCTTTCTATTTTTTTTTAAAAAAAATAATTATTACTTACAATAATCCAACGGGTATCCTCGTATGTGCCCATCCTACAAGTGATAAAATGATAAGTACCAGTCTACCATCAAGTTTGTAGGATAGAAACTATTTAGTATACATTGTTTTTGTCTTAATTTCTAGTTTTGGTATCCATCTAAATCGATACTCCATTATGTTAATTATTTCATTTCTTTCTTTTGACATCTACATCACTTTTTAATGTGGTTACCACTTGCTATAATCATACTTCACTTAGCATTTTATTTGAACTTAGTGAAAGTGAAATTTTTCCTAATAATTGGTCTAAAAATTGAAGAAGATTAAAGCCAAGAAATTGAGTTCTTCCTTCTTTCTTCCAACTTTGAAAGTACCGATAGATACTATCATATAAAAAGAAGAGGTGGTCTGACTAACTCAATGAAGTGAATTTTTCAAAAACATGCTCAGAAAAATGAGAAAAATGGAGTTTTTGAAAAGAAAAATTAACAGATATTTAAAGATAAATTTTTGAAATTTGGTTCAAAATTTATGGTCAAATATTAACTTATATTTATATATATACCTCTTCTAAAATGCTAATGAGAATTAGAATTTGCAGAGAGAAGAAATGGCAAAAGAATCCTACGATCAAGCCATTGCTGCACTCGAGAAACTCCTCAGGTTTGTACTCTCTCTACGACTCTACCTTCTAAATCACACTACTTTTTTCTCGATCAAGTGGGGCCCAAAAAATATACATACACCCACACATACGTAGACAAAAAAAATGTTAAAATTTGCGAATATGCAGAGAAAACATAATATAATCATGCAATGTTTACTCGTAAAATTCAATTTCCCGGCAATGAACATGTTACTTGGTTTCGAGTTCTCCAGATCTGCATTAATTTTACCATTCTATCATCATTTTTTTACCCCATATCTGCATTAATTTATCATGGTAATGGTGCTCAAACCACAAATCTTTTTTTTTTCTACCTGAAATATTGCTTCAATAATAATAATGGTCTAAATTATTTTCTGCAATTACAGCGAGAAAGCAGAACTTGGACCAGTTGCTGCAGCAAGAGTTGACCAGATCACTGCTGAATTGAAATCAGCAGACGGCGGCAAGGCATTCGACCCTGTTGAGCACATGAAAGCTGGCTTTATTCATTTCAAGACTGAGAAATATGAGTAAGCAAATTCATTCAAATTAAAATTTCTGCATATTTGATGTTGTAACATTATTAGTGTCTGATAATTTTTCCTGTTTTCTATTTATGTACCAACAGCACAAACCCAGCCTTATATGGTGAGCTAGCAAAGGGCCAGAGCCCTAAGGTACAAATTCCTTGTTAATTTGTTGTCTAATTTTATGATTTGTACGGTTTCTGATGAGTTCTATTGTCCTAAATGTGTAAACAGTTCATGGTTTTCGCGTGCTCTGACTCACGAGTCTGCCCATCCCATGTCCTCAACTTCCAACCTGGTGAGGCATTCATGGTTCGTAACATCGCCAACATGGTCCCTGCTTATGACAAGGTCAGTTACAAATCGATCAACTAGTCGATTATTTCGCTCTGGAATTGTGTTTTTTAAAAATAAAGATGGAATTGAATTTTTACAGGTCAGGTACTCTGGAGTAGGAGCAGCCATTGAATACGCCGTTCTTCATCTTAAGGTGGAGAACATCGTTGTCATTGGC</genome_strand>
        <mrna_strand>CGATTACTAGTTAGTAACAAAGTAGTATAAAGGGCAAGCAAAAGCTAAAGGAAGCTCATTGAGAAATGTCAACTGCTTCCATTAACAATTGCCTTACTCTCTCCCCTGCTCAAGCTTCCCTTAAGAAACCTACTCGTCCCGTTGCCTTCGCAAGGCTTGGCAACTCTTCTTCTTCTTCTTCTATTCCAAGTCTCATCAGAAACGAGCCCGTCTTTGCTGCCCCTACTCCCATCATCAACCCCATTGTG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGAGAAGAAATGGCAAAAGAATCCTACGATCAAGCCATTGCTGCACTCGAGAAACTCCTCAG....................................................................................................................................................................................................................................................................................................................................................................................CGAGAAAGCAGAACTTGGACCAGTTGCTGCAGCAAGAGTTGACCAGATCACTGCTGAATTGAAATCAGCAGACGGCGGCAAGGCATTCGACCCTGTTGAGCACATGAAAGCTGGCTTTATTCATTTCAAGACTGAGAAATATGA..................................................................................................CACAAACCCAGCCTTATATGGTGAGCTAGCAAAGGGCCAGAGCCCTAAG....................................................................................TTCATGGTTTTCGCGTGCTCTGACTCACGAGTCTGCCCATCCCATGTCCTCAACTTCCAACCTGGTGAGGCATTCATGGTTCATAACATCGCCAACATGGTCCCTGCTTATGACAAG.....................................................................................GTCAGGTACTCTGGAGTAGGAGCAGCCATTGAATACGCCGTTCTTCATCTTAAGGTGGAAAACATCGTTGTCATTGGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0236E02-u8qcS/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E728772" ref_strand="+" ref_description="SGN-E728772 [LA18DF02]">
      <seq>ctattactagttagtaacaaagtagtataaagggcaagcaaaagctaaaggaagctcattgagaaatgtcaactgcttccgttaacaattgccttactctctcccctgctcaagcttcccttaagaaacctactcgtcccgttgccttcgcaaggcttggcaactcttcttcttcttcttctattccaagtctcatcagaaacgagcccgtctttgctgcccctactcccatcatcaaccccattgtgagagaagaaatggcaaaagaatcctacgatcaagccattgctgcactcgagaaactcctcagcgagaaagcagaacttggaccagttgctgcagcaagagttgaccagatcactgctgaattgaaatcagcagacggcggcaaggcattcgaccctgttgagcacatgaaagctggctttattcatttcaagactgagaaatatgacacaaacccagccttatatggtgagctagcaaagggccagagccctaagttcatggttttcgcgtgctctgactcacgagtctgcccatcccatgtcctcaacttccaacctggtgaggcattcatggttcgtaacatcgccaacatggtccctgcttatgacaaggtcaggtactctggagtaggagcagccattgaata</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0236E02-u8qcS/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0236E02.1" temp_strand="+" temp_description="C02HBa0236E02.1  AC215430.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0236E02 sequenced_by:kribb upload_account_name:korea">
        <position start="14635" stop="17725"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="14935" g_stop="15182" g_length="248"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="248" r_length="248" r_score="0.996"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="15183" i_stop="16379" i_length="1197">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.971" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="16380" g_stop="16441" g_length="62"/>
          <reference_exon_boundary r_type="cDNA" r_start="249" r_stop="310" r_length="62" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="16442" i_stop="16813" i_length="372">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="16814" g_stop="16957" g_length="144"/>
          <reference_exon_boundary r_type="cDNA" r_start="311" r_stop="454" r_length="144" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="16958" i_stop="17055" i_length="98">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="17056" g_stop="17104" g_length="49"/>
          <reference_exon_boundary r_type="cDNA" r_start="455" r_stop="503" r_length="49" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="17105" i_stop="17188" i_length="84">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.961" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="17189" g_stop="17305" g_length="117"/>
          <reference_exon_boundary r_type="cDNA" r_start="504" r_stop="620" r_length="117" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="17306" i_stop="17390" i_length="85">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.979" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="17391" g_stop="17425" g_length="35"/>
          <reference_exon_boundary r_type="cDNA" r_start="621" r_stop="655" r_length="35" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0236E02.1" gen_strand="+" ref_id="SGN-E728772" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>655</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0236E02.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E728772" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="14935" e_stop="15182"/>
          <exon e_start="16380" e_stop="16441"/>
          <exon e_start="16814" e_stop="16957"/>
          <exon e_start="17056" e_stop="17104"/>
          <exon e_start="17189" e_stop="17305"/>
          <exon e_start="17391" e_stop="17425"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTATTACTAGTTAGTAACAAAGTAGTATAAAGGGCAAGCAAAAGCTAAAGGAAGCTCATTGAGAAATGTCAACTGCTTCCATTAACAATTGCCTTACTCTCTCCCCTGCTCAAGCTTCCCTTAAGAAACCTACTCGTCCCGTTGCCTTCGCAAGGCTTGGCAACTCTTCTTCTTCTTCTTCTATTCCAAGTCTCATCAGAAACGAGCCCGTCTTTGCTGCCCCTACTCCCATCATCAACCCCATTGTGGTACGAATTTTTAACTTACATCACTGTATTTTAATCTGTTATAACAAGTTATTTATATTTGACGTTACTTAATTTATTTTTTAAGCAAGACATTTTTTTTGTCTTATCGTATTTTTTGTAACGACTTGTGTCCATGCATGCTAGTTCACGTGAAAATTCAATATTGGCATAGTTCTAAACTTTAGTTTCTAACCACCTTTATTATTGGTATTGTTATTTTTGGCCATGAATCTCCTGAAGTTAGGTGAATTGATCATGTCGCTCTAAATTGTACACGTCTATTGCGTGTACTCAATGACATATAATATATTATTGCAATCCTAAAATAAGTGTTATTTTAATTTATTTTGAACTCATTAAAATAAATATGATATTTTACTGAGTTACTTATATTTATTACTTTGATTTTTTTGAGTACTAATTTGTATTTTGAAACTTTTAAGATGACGAGAGGGTGGAAATAACAAATTAAATTTGAAAATGAACCAAAATAGAGGTGGCAATTAGGTAGAGGTTCTCGCAAAATGAATATTAAATATGTAGGGCCGTATTGTGAATTATGTGGATAATGTTTTTGCTTTCTATTTTTTTTTAAAAAAAATAATTATTACTTACAATAATCCAACGGGTATCCTCGTATGTGCCCATCCTACAAGTGATAAAATGATAAGTACCAGTCTACCATCAAGTTTGTAGGATAGAAACTATTTAGTATACATTGTTTTTGTCTTAATTTCTAGTTTTGGTATCCATCTAAATCGATACTCCATTATGTTAATTATTTCATTTCTTTCTTTTGACATCTACATCACTTTTTAATGTGGTTACCACTTGCTATAATCATACTTCACTTAGCATTTTATTTGAACTTAGTGAAAGTGAAATTTTTCCTAATAATTGGTCTAAAAATTGAAGAAGATTAAAGCCAAGAAATTGAGTTCTTCCTTCTTTCTTCCAACTTTGAAAGTACCGATAGATACTATCATATAAAAAGAAGAGGTGGTCTGACTAACTCAATGAAGTGAATTTTTCAAAAACATGCTCAGAAAAATGAGAAAAATGGAGTTTTTGAAAAGAAAAATTAACAGATATTTAAAGATAAATTTTTGAAATTTGGTTCAAAATTTATGGTCAAATATTAACTTATATTTATATATATACCTCTTCTAAAATGCTAATGAGAATTAGAATTTGCAGAGAGAAGAAATGGCAAAAGAATCCTACGATCAAGCCATTGCTGCACTCGAGAAACTCCTCAGGTTTGTACTCTCTCTACGACTCTACCTTCTAAATCACACTACTTTTTTCTCGATCAAGTGGGGCCCAAAAAATATACATACACCCACACATACGTAGACAAAAAAAATGTTAAAATTTGCGAATATGCAGAGAAAACATAATATAATCATGCAATGTTTACTCGTAAAATTCAATTTCCCGGCAATGAACATGTTACTTGGTTTCGAGTTCTCCAGATCTGCATTAATTTTACCATTCTATCATCATTTTTTTACCCCATATCTGCATTAATTTATCATGGTAATGGTGCTCAAACCACAAATCTTTTTTTTTTCTACCTGAAATATTGCTTCAATAATAATAATGGTCTAAATTATTTTCTGCAATTACAGCGAGAAAGCAGAACTTGGACCAGTTGCTGCAGCAAGAGTTGACCAGATCACTGCTGAATTGAAATCAGCAGACGGCGGCAAGGCATTCGACCCTGTTGAGCACATGAAAGCTGGCTTTATTCATTTCAAGACTGAGAAATATGAGTAAGCAAATTCATTCAAATTAAAATTTCTGCATATTTGATGTTGTAACATTATTAGTGTCTGATAATTTTTCCTGTTTTCTATTTATGTACCAACAGCACAAACCCAGCCTTATATGGTGAGCTAGCAAAGGGCCAGAGCCCTAAGGTACAAATTCCTTGTTAATTTGTTGTCTAATTTTATGATTTGTACGGTTTCTGATGAGTTCTATTGTCCTAAATGTGTAAACAGTTCATGGTTTTCGCGTGCTCTGACTCACGAGTCTGCCCATCCCATGTCCTCAACTTCCAACCTGGTGAGGCATTCATGGTTCGTAACATCGCCAACATGGTCCCTGCTTATGACAAGGTCAGTTACAAATCGATCAACTAGTCGATTATTTCGCTCTGGAATTGTGTTTTTTAAAAATAAAGATGGAATTGAATTTTTACAGGTCAGGTACTCTGGAGTAGGAGCAGCCATTGAATA</genome_strand>
        <mrna_strand>CTATTACTAGTTAGTAACAAAGTAGTATAAAGGGCAAGCAAAAGCTAAAGGAAGCTCATTGAGAAATGTCAACTGCTTCCGTTAACAATTGCCTTACTCTCTCCCCTGCTCAAGCTTCCCTTAAGAAACCTACTCGTCCCGTTGCCTTCGCAAGGCTTGGCAACTCTTCTTCTTCTTCTTCTATTCCAAGTCTCATCAGAAACGAGCCCGTCTTTGCTGCCCCTACTCCCATCATCAACCCCATTGTG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGAGAAGAAATGGCAAAAGAATCCTACGATCAAGCCATTGCTGCACTCGAGAAACTCCTCAG....................................................................................................................................................................................................................................................................................................................................................................................CGAGAAAGCAGAACTTGGACCAGTTGCTGCAGCAAGAGTTGACCAGATCACTGCTGAATTGAAATCAGCAGACGGCGGCAAGGCATTCGACCCTGTTGAGCACATGAAAGCTGGCTTTATTCATTTCAAGACTGAGAAATATGA..................................................................................................CACAAACCCAGCCTTATATGGTGAGCTAGCAAAGGGCCAGAGCCCTAAG....................................................................................TTCATGGTTTTCGCGTGCTCTGACTCACGAGTCTGCCCATCCCATGTCCTCAACTTCCAACCTGGTGAGGCATTCATGGTTCGTAACATCGCCAACATGGTCCCTGCTTATGACAAG.....................................................................................GTCAGGTACTCTGGAGTAGGAGCAGCCATTGAATA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0236E02-u8qcS/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E366513" ref_strand="+" ref_description="SGN-E366513 [cLPT-13-F8]">
      <seq>ctattactagttagtaacaaagtagtataaagggaaagcaaaagctaaaggaagctcattgagaaatgtcaactgcttccattaacaattgccttactctctcccctgctcaagcttcccttaagaaacctactcgtcccgttgccttcgcaaggcttggcaactcttcttcttcttcttcttcttctattccaagtctcatcagaaacgagcccgtctttgctgcccctactcccatcatcaaccccattgtgagagaagaaatggcaaaagaatcctacgatcaggccgttgctgcactcgagaaactcctcagcgagaaagcagaacttggaccagttgctgcagcaagagttgaccagatcactgctgaattgaaatcagcagatggcggcaaggcattcgaccctgttgagcacatgaaagctggctttattcatttcaagactgagaaatatgatacaaacccagccttatatggtgaactagcaaagggccagagcccaaagttcatggttttcgcgtgctctgactcacgagtgtgcccatcccatgtcctcaac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0236E02-u8qcS/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0236E02.1" temp_strand="+" temp_description="C02HBa0236E02.1  AC215430.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0236E02 sequenced_by:kribb upload_account_name:korea">
        <position start="14635" stop="17542"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="14935" g_stop="15182" g_length="248"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="254" r_length="254" r_score="0.948"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="15183" i_stop="16379" i_length="1197">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.971" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="16380" g_stop="16441" g_length="62"/>
          <reference_exon_boundary r_type="cDNA" r_start="255" r_stop="316" r_length="62" r_score="0.968"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="16442" i_stop="16813" i_length="372">
            <donor d_prob="0.999" d_score="0.96"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="16814" g_stop="16957" g_length="144"/>
          <reference_exon_boundary r_type="cDNA" r_start="317" r_stop="460" r_length="144" r_score="0.993"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="16958" i_stop="17055" i_length="98">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="17056" g_stop="17104" g_length="49"/>
          <reference_exon_boundary r_type="cDNA" r_start="461" r_stop="509" r_length="49" r_score="0.939"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="17105" i_stop="17188" i_length="84">
            <donor d_prob="1.000" d_score="0.94"/>
            <acceptor a_prob="0.961" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="17189" g_stop="17242" g_length="54"/>
          <reference_exon_boundary r_type="cDNA" r_start="510" r_stop="563" r_length="54" r_score="0.981"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0236E02.1" gen_strand="+" ref_id="SGN-E366513" ref_strand="+">
        <total_alignment_score>0.967</total_alignment_score>
        <cumulative_length_of_scored_exons>557</cumulative_length_of_scored_exons>
        <coverage percentage="0.989" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0236E02.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E366513" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="14935" e_stop="15182"/>
          <exon e_start="16380" e_stop="16441"/>
          <exon e_start="16814" e_stop="16957"/>
          <exon e_start="17056" e_stop="17104"/>
          <exon e_start="17189" e_stop="17242"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTATTACTAGTTAGTAACAAAGTAGTATAAAGGGCAAGCAAAAGCTAAAGGAAGCTCATTGAGAAATGTCAACTGCTTCCATTAACAATTGCCTTACTCTCTCCCCTGCTCAAGCTTCCCTTAAGAAACCTACTCGTCCCGTTGCCTTCGCAAGGCTTGGCAA-----C-TCTTCTTCTTCTTCTTCTATTCCAAGTCTCATCAGAAACGAGCCCGTCTTTGCTGCCCCTACTCCCATCATCAACCCCATTGTGGTACGAATTTTTAACTTACATCACTGTATTTTAATCTGTTATAACAAGTTATTTATATTTGACGTTACTTAATTTATTTTTTAAGCAAGACATTTTTTTTGTCTTATCGTATTTTTTGTAACGACTTGTGTCCATGCATGCTAGTTCACGTGAAAATTCAATATTGGCATAGTTCTAAACTTTAGTTTCTAACCACCTTTATTATTGGTATTGTTATTTTTGGCCATGAATCTCCTGAAGTTAGGTGAATTGATCATGTCGCTCTAAATTGTACACGTCTATTGCGTGTACTCAATGACATATAATATATTATTGCAATCCTAAAATAAGTGTTATTTTAATTTATTTTGAACTCATTAAAATAAATATGATATTTTACTGAGTTACTTATATTTATTACTTTGATTTTTTTGAGTACTAATTTGTATTTTGAAACTTTTAAGATGACGAGAGGGTGGAAATAACAAATTAAATTTGAAAATGAACCAAAATAGAGGTGGCAATTAGGTAGAGGTTCTCGCAAAATGAATATTAAATATGTAGGGCCGTATTGTGAATTATGTGGATAATGTTTTTGCTTTCTATTTTTTTTTAAAAAAAATAATTATTACTTACAATAATCCAACGGGTATCCTCGTATGTGCCCATCCTACAAGTGATAAAATGATAAGTACCAGTCTACCATCAAGTTTGTAGGATAGAAACTATTTAGTATACATTGTTTTTGTCTTAATTTCTAGTTTTGGTATCCATCTAAATCGATACTCCATTATGTTAATTATTTCATTTCTTTCTTTTGACATCTACATCACTTTTTAATGTGGTTACCACTTGCTATAATCATACTTCACTTAGCATTTTATTTGAACTTAGTGAAAGTGAAATTTTTCCTAATAATTGGTCTAAAAATTGAAGAAGATTAAAGCCAAGAAATTGAGTTCTTCCTTCTTTCTTCCAACTTTGAAAGTACCGATAGATACTATCATATAAAAAGAAGAGGTGGTCTGACTAACTCAATGAAGTGAATTTTTCAAAAACATGCTCAGAAAAATGAGAAAAATGGAGTTTTTGAAAAGAAAAATTAACAGATATTTAAAGATAAATTTTTGAAATTTGGTTCAAAATTTATGGTCAAATATTAACTTATATTTATATATATACCTCTTCTAAAATGCTAATGAGAATTAGAATTTGCAGAGAGAAGAAATGGCAAAAGAATCCTACGATCAAGCCATTGCTGCACTCGAGAAACTCCTCAGGTTTGTACTCTCTCTACGACTCTACCTTCTAAATCACACTACTTTTTTCTCGATCAAGTGGGGCCCAAAAAATATACATACACCCACACATACGTAGACAAAAAAAATGTTAAAATTTGCGAATATGCAGAGAAAACATAATATAATCATGCAATGTTTACTCGTAAAATTCAATTTCCCGGCAATGAACATGTTACTTGGTTTCGAGTTCTCCAGATCTGCATTAATTTTACCATTCTATCATCATTTTTTTACCCCATATCTGCATTAATTTATCATGGTAATGGTGCTCAAACCACAAATCTTTTTTTTTTCTACCTGAAATATTGCTTCAATAATAATAATGGTCTAAATTATTTTCTGCAATTACAGCGAGAAAGCAGAACTTGGACCAGTTGCTGCAGCAAGAGTTGACCAGATCACTGCTGAATTGAAATCAGCAGACGGCGGCAAGGCATTCGACCCTGTTGAGCACATGAAAGCTGGCTTTATTCATTTCAAGACTGAGAAATATGAGTAAGCAAATTCATTCAAATTAAAATTTCTGCATATTTGATGTTGTAACATTATTAGTGTCTGATAATTTTTCCTGTTTTCTATTTATGTACCAACAGCACAAACCCAGCCTTATATGGTGAGCTAGCAAAGGGCCAGAGCCCTAAGGTACAAATTCCTTGTTAATTTGTTGTCTAATTTTATGATTTGTACGGTTTCTGATGAGTTCTATTGTCCTAAATGTGTAAACAGTTCATGGTTTTCGCGTGCTCTGACTCACGAGTCTGCCCATCCCATGTCCTCAAC</genome_strand>
        <mrna_strand>CTATTACTAGTTAGTAACAAAGTAGTATAAAGGGAAAGCAAAAGCTAAAGGAAGCTCATTGAGAAATGTCAACTGCTTCCATTAACAATTGCCTTACTCTCTCCCCTGCTCAAGCTTCCCTTAAGAAACCTACTCGTCCCGTTGCCTTCGCAAGGCTTGGCAACTCTTCTTCTTCTTCTTCTTCTTCTATTCCAAGTCTCATCAGAAACGAGCCCGTCTTTGCTGCCCCTACTCCCATCATCAACCCCATTGTG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGAGAAGAAATGGCAAAAGAATCCTACGATCAGGCCGTTGCTGCACTCGAGAAACTCCTCAG....................................................................................................................................................................................................................................................................................................................................................................................CGAGAAAGCAGAACTTGGACCAGTTGCTGCAGCAAGAGTTGACCAGATCACTGCTGAATTGAAATCAGCAGATGGCGGCAAGGCATTCGACCCTGTTGAGCACATGAAAGCTGGCTTTATTCATTTCAAGACTGAGAAATATGA..................................................................................................TACAAACCCAGCCTTATATGGTGAACTAGCAAAGGGCCAGAGCCCAAAG....................................................................................TTCATGGTTTTCGCGTGCTCTGACTCACGAGTGTGCCCATCCCATGTCCTCAAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0236E02-u8qcS/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E319451" ref_strand="+" ref_description="SGN-E319451 [cTOB-15-J16]">
      <seq>ctattactagttagtaacaaagtagtataaagggcaagcaaaagctaaaggaagctcattgagaaatgtcaactgcttccattaacaattgccttactctctcccctgctcaagcttcccttaagaaacctactcgtcccgttgccttcgcaaggcttggcaactcttcttcttcttcttctattccaagtctcatcagaaacgagcccgtctttgctgcccctactcccatcatcaaccccattgtgagagaagaaatggcaaaagaatcctacgatcaagccattgctgcactcgagaaactcctcagcgagaaagcagaacttggaccagttgctgcagcaagagttgaccagatcactgctgaattgaaatcagcagacggcggcaaggcattcgaccctgttgagcacatgaaagctggctttattcatttcaagactgagaaatatgacacaaacccagccttatatggtgagctagcaaagggccagagccctaagttcatggttttcgcgtgctctg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0236E02-u8qcS/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0236E02.1" temp_strand="+" temp_description="C02HBa0236E02.1  AC215430.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0236E02 sequenced_by:kribb upload_account_name:korea">
        <position start="14635" stop="17510"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="14935" g_stop="15182" g_length="248"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="248" r_length="248" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="15183" i_stop="16379" i_length="1197">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.971" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="16380" g_stop="16441" g_length="62"/>
          <reference_exon_boundary r_type="cDNA" r_start="249" r_stop="310" r_length="62" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="16442" i_stop="16813" i_length="372">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="16814" g_stop="16957" g_length="144"/>
          <reference_exon_boundary r_type="cDNA" r_start="311" r_stop="454" r_length="144" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="16958" i_stop="17055" i_length="98">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="17056" g_stop="17104" g_length="49"/>
          <reference_exon_boundary r_type="cDNA" r_start="455" r_stop="503" r_length="49" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="17105" i_stop="17188" i_length="84">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.961" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="17189" g_stop="17210" g_length="22"/>
          <reference_exon_boundary r_type="cDNA" r_start="504" r_stop="525" r_length="22" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0236E02.1" gen_strand="+" ref_id="SGN-E319451" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>525</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0236E02.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E319451" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="14935" e_stop="15182"/>
          <exon e_start="16380" e_stop="16441"/>
          <exon e_start="16814" e_stop="16957"/>
          <exon e_start="17056" e_stop="17104"/>
          <exon e_start="17189" e_stop="17210"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTATTACTAGTTAGTAACAAAGTAGTATAAAGGGCAAGCAAAAGCTAAAGGAAGCTCATTGAGAAATGTCAACTGCTTCCATTAACAATTGCCTTACTCTCTCCCCTGCTCAAGCTTCCCTTAAGAAACCTACTCGTCCCGTTGCCTTCGCAAGGCTTGGCAACTCTTCTTCTTCTTCTTCTATTCCAAGTCTCATCAGAAACGAGCCCGTCTTTGCTGCCCCTACTCCCATCATCAACCCCATTGTGGTACGAATTTTTAACTTACATCACTGTATTTTAATCTGTTATAACAAGTTATTTATATTTGACGTTACTTAATTTATTTTTTAAGCAAGACATTTTTTTTGTCTTATCGTATTTTTTGTAACGACTTGTGTCCATGCATGCTAGTTCACGTGAAAATTCAATATTGGCATAGTTCTAAACTTTAGTTTCTAACCACCTTTATTATTGGTATTGTTATTTTTGGCCATGAATCTCCTGAAGTTAGGTGAATTGATCATGTCGCTCTAAATTGTACACGTCTATTGCGTGTACTCAATGACATATAATATATTATTGCAATCCTAAAATAAGTGTTATTTTAATTTATTTTGAACTCATTAAAATAAATATGATATTTTACTGAGTTACTTATATTTATTACTTTGATTTTTTTGAGTACTAATTTGTATTTTGAAACTTTTAAGATGACGAGAGGGTGGAAATAACAAATTAAATTTGAAAATGAACCAAAATAGAGGTGGCAATTAGGTAGAGGTTCTCGCAAAATGAATATTAAATATGTAGGGCCGTATTGTGAATTATGTGGATAATGTTTTTGCTTTCTATTTTTTTTTAAAAAAAATAATTATTACTTACAATAATCCAACGGGTATCCTCGTATGTGCCCATCCTACAAGTGATAAAATGATAAGTACCAGTCTACCATCAAGTTTGTAGGATAGAAACTATTTAGTATACATTGTTTTTGTCTTAATTTCTAGTTTTGGTATCCATCTAAATCGATACTCCATTATGTTAATTATTTCATTTCTTTCTTTTGACATCTACATCACTTTTTAATGTGGTTACCACTTGCTATAATCATACTTCACTTAGCATTTTATTTGAACTTAGTGAAAGTGAAATTTTTCCTAATAATTGGTCTAAAAATTGAAGAAGATTAAAGCCAAGAAATTGAGTTCTTCCTTCTTTCTTCCAACTTTGAAAGTACCGATAGATACTATCATATAAAAAGAAGAGGTGGTCTGACTAACTCAATGAAGTGAATTTTTCAAAAACATGCTCAGAAAAATGAGAAAAATGGAGTTTTTGAAAAGAAAAATTAACAGATATTTAAAGATAAATTTTTGAAATTTGGTTCAAAATTTATGGTCAAATATTAACTTATATTTATATATATACCTCTTCTAAAATGCTAATGAGAATTAGAATTTGCAGAGAGAAGAAATGGCAAAAGAATCCTACGATCAAGCCATTGCTGCACTCGAGAAACTCCTCAGGTTTGTACTCTCTCTACGACTCTACCTTCTAAATCACACTACTTTTTTCTCGATCAAGTGGGGCCCAAAAAATATACATACACCCACACATACGTAGACAAAAAAAATGTTAAAATTTGCGAATATGCAGAGAAAACATAATATAATCATGCAATGTTTACTCGTAAAATTCAATTTCCCGGCAATGAACATGTTACTTGGTTTCGAGTTCTCCAGATCTGCATTAATTTTACCATTCTATCATCATTTTTTTACCCCATATCTGCATTAATTTATCATGGTAATGGTGCTCAAACCACAAATCTTTTTTTTTTCTACCTGAAATATTGCTTCAATAATAATAATGGTCTAAATTATTTTCTGCAATTACAGCGAGAAAGCAGAACTTGGACCAGTTGCTGCAGCAAGAGTTGACCAGATCACTGCTGAATTGAAATCAGCAGACGGCGGCAAGGCATTCGACCCTGTTGAGCACATGAAAGCTGGCTTTATTCATTTCAAGACTGAGAAATATGAGTAAGCAAATTCATTCAAATTAAAATTTCTGCATATTTGATGTTGTAACATTATTAGTGTCTGATAATTTTTCCTGTTTTCTATTTATGTACCAACAGCACAAACCCAGCCTTATATGGTGAGCTAGCAAAGGGCCAGAGCCCTAAGGTACAAATTCCTTGTTAATTTGTTGTCTAATTTTATGATTTGTACGGTTTCTGATGAGTTCTATTGTCCTAAATGTGTAAACAGTTCATGGTTTTCGCGTGCTCTG</genome_strand>
        <mrna_strand>CTATTACTAGTTAGTAACAAAGTAGTATAAAGGGCAAGCAAAAGCTAAAGGAAGCTCATTGAGAAATGTCAACTGCTTCCATTAACAATTGCCTTACTCTCTCCCCTGCTCAAGCTTCCCTTAAGAAACCTACTCGTCCCGTTGCCTTCGCAAGGCTTGGCAACTCTTCTTCTTCTTCTTCTATTCCAAGTCTCATCAGAAACGAGCCCGTCTTTGCTGCCCCTACTCCCATCATCAACCCCATTGTG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGAGAAGAAATGGCAAAAGAATCCTACGATCAAGCCATTGCTGCACTCGAGAAACTCCTCAG....................................................................................................................................................................................................................................................................................................................................................................................CGAGAAAGCAGAACTTGGACCAGTTGCTGCAGCAAGAGTTGACCAGATCACTGCTGAATTGAAATCAGCAGACGGCGGCAAGGCATTCGACCCTGTTGAGCACATGAAAGCTGGCTTTATTCATTTCAAGACTGAGAAATATGA..................................................................................................CACAAACCCAGCCTTATATGGTGAGCTAGCAAAGGGCCAGAGCCCTAAG....................................................................................TTCATGGTTTTCGCGTGCTCTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0236E02-u8qcS/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E738185" ref_strand="+" ref_description="SGN-E738185 [LC12CG08]">
      <seq>tattactagttagtaacaaagtagtataaagggcaagcaaaagctaaaggaagctcattgagaaatgtcaactgcttccattaacaattgccttactctctcccctgctcaagcttcccttaagaaacctactcgtcccgttgccttcgcaaggcttggcaactcttcttcttcttcttctattccaagtctcatcagaaacgagcccgtctttgctgcccctactcccatcatcaaccccattgtgagagaagaaatggcaaaagaatcctacgatcaagccattgctgcactcgagaaactcctcagcgagaaagcagaacttggaccagttgctgcagcaagagttgaccagatcactgctgaattgaaatcagcagacggcggcaaggcattcgaccctgttgagcacatgaaagctggctttattcatttcaagactgagaaatatgacacaaacccagccttatatggtgagctagcaaagggccagagccctaagttcatggttttcgcgtgctctgactcacgagtctgcccatcccatgtcctcaacttccaacctggtgaggcattcatggttcgtaacatcgccaacatggtccctgcttatgacaaggtcaggtactctggagtaggagcagccattgaatacgccgttcttcatcttaaggtggagaacatcgttgtcattggccacagtgcttgtggaggtatcaaaggtctcatgtcactacctgaagatggtagtgaatcaactgcctttattgaggattgggtaaaaatttgtttacctgccaaggcaaaggttctggccgatcacggagggaaagaatttgcacatcaatgcacagcttgtgagaaggaagctgtgaacgtttcacttggaaatctgcttacgtatccattcgtgagagaaggattggtg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0236E02-u8qcS/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0236E02.1" temp_strand="+" temp_description="C02HBa0236E02.1  AC215430.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0236E02 sequenced_by:kribb upload_account_name:korea">
        <position start="14636" stop="18156"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="14936" g_stop="15182" g_length="247"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="247" r_length="247" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="15183" i_stop="16379" i_length="1197">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.971" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="16380" g_stop="16441" g_length="62"/>
          <reference_exon_boundary r_type="cDNA" r_start="248" r_stop="309" r_length="62" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="16442" i_stop="16813" i_length="372">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="16814" g_stop="16957" g_length="144"/>
          <reference_exon_boundary r_type="cDNA" r_start="310" r_stop="453" r_length="144" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="16958" i_stop="17055" i_length="98">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="17056" g_stop="17104" g_length="49"/>
          <reference_exon_boundary r_type="cDNA" r_start="454" r_stop="502" r_length="49" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="17105" i_stop="17188" i_length="84">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.961" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="17189" g_stop="17305" g_length="117"/>
          <reference_exon_boundary r_type="cDNA" r_start="503" r_stop="619" r_length="117" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="17306" i_stop="17390" i_length="85">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.979" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="17391" g_stop="17530" g_length="140"/>
          <reference_exon_boundary r_type="cDNA" r_start="620" r_stop="759" r_length="140" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="17531" i_stop="17607" i_length="77">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.948" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="17608" g_stop="17713" g_length="106"/>
          <reference_exon_boundary r_type="cDNA" r_start="760" r_stop="865" r_length="106" r_score="1.000"/>
        </exon>
        <intron i_serial="7">
          <gDNA_intron_boundary i_start="17714" i_stop="17793" i_length="80">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="8">
          <gDNA_exon_boundary g_start="17794" g_stop="17856" g_length="63"/>
          <reference_exon_boundary r_type="cDNA" r_start="866" r_stop="928" r_length="63" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0236E02.1" gen_strand="+" ref_id="SGN-E738185" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>928</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0236E02.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E738185" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="14936" e_stop="15182"/>
          <exon e_start="16380" e_stop="16441"/>
          <exon e_start="16814" e_stop="16957"/>
          <exon e_start="17056" e_stop="17104"/>
          <exon e_start="17189" e_stop="17305"/>
          <exon e_start="17391" e_stop="17530"/>
          <exon e_start="17608" e_stop="17713"/>
          <exon e_start="17794" e_stop="17856"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TATTACTAGTTAGTAACAAAGTAGTATAAAGGGCAAGCAAAAGCTAAAGGAAGCTCATTGAGAAATGTCAACTGCTTCCATTAACAATTGCCTTACTCTCTCCCCTGCTCAAGCTTCCCTTAAGAAACCTACTCGTCCCGTTGCCTTCGCAAGGCTTGGCAACTCTTCTTCTTCTTCTTCTATTCCAAGTCTCATCAGAAACGAGCCCGTCTTTGCTGCCCCTACTCCCATCATCAACCCCATTGTGGTACGAATTTTTAACTTACATCACTGTATTTTAATCTGTTATAACAAGTTATTTATATTTGACGTTACTTAATTTATTTTTTAAGCAAGACATTTTTTTTGTCTTATCGTATTTTTTGTAACGACTTGTGTCCATGCATGCTAGTTCACGTGAAAATTCAATATTGGCATAGTTCTAAACTTTAGTTTCTAACCACCTTTATTATTGGTATTGTTATTTTTGGCCATGAATCTCCTGAAGTTAGGTGAATTGATCATGTCGCTCTAAATTGTACACGTCTATTGCGTGTACTCAATGACATATAATATATTATTGCAATCCTAAAATAAGTGTTATTTTAATTTATTTTGAACTCATTAAAATAAATATGATATTTTACTGAGTTACTTATATTTATTACTTTGATTTTTTTGAGTACTAATTTGTATTTTGAAACTTTTAAGATGACGAGAGGGTGGAAATAACAAATTAAATTTGAAAATGAACCAAAATAGAGGTGGCAATTAGGTAGAGGTTCTCGCAAAATGAATATTAAATATGTAGGGCCGTATTGTGAATTATGTGGATAATGTTTTTGCTTTCTATTTTTTTTTAAAAAAAATAATTATTACTTACAATAATCCAACGGGTATCCTCGTATGTGCCCATCCTACAAGTGATAAAATGATAAGTACCAGTCTACCATCAAGTTTGTAGGATAGAAACTATTTAGTATACATTGTTTTTGTCTTAATTTCTAGTTTTGGTATCCATCTAAATCGATACTCCATTATGTTAATTATTTCATTTCTTTCTTTTGACATCTACATCACTTTTTAATGTGGTTACCACTTGCTATAATCATACTTCACTTAGCATTTTATTTGAACTTAGTGAAAGTGAAATTTTTCCTAATAATTGGTCTAAAAATTGAAGAAGATTAAAGCCAAGAAATTGAGTTCTTCCTTCTTTCTTCCAACTTTGAAAGTACCGATAGATACTATCATATAAAAAGAAGAGGTGGTCTGACTAACTCAATGAAGTGAATTTTTCAAAAACATGCTCAGAAAAATGAGAAAAATGGAGTTTTTGAAAAGAAAAATTAACAGATATTTAAAGATAAATTTTTGAAATTTGGTTCAAAATTTATGGTCAAATATTAACTTATATTTATATATATACCTCTTCTAAAATGCTAATGAGAATTAGAATTTGCAGAGAGAAGAAATGGCAAAAGAATCCTACGATCAAGCCATTGCTGCACTCGAGAAACTCCTCAGGTTTGTACTCTCTCTACGACTCTACCTTCTAAATCACACTACTTTTTTCTCGATCAAGTGGGGCCCAAAAAATATACATACACCCACACATACGTAGACAAAAAAAATGTTAAAATTTGCGAATATGCAGAGAAAACATAATATAATCATGCAATGTTTACTCGTAAAATTCAATTTCCCGGCAATGAACATGTTACTTGGTTTCGAGTTCTCCAGATCTGCATTAATTTTACCATTCTATCATCATTTTTTTACCCCATATCTGCATTAATTTATCATGGTAATGGTGCTCAAACCACAAATCTTTTTTTTTTCTACCTGAAATATTGCTTCAATAATAATAATGGTCTAAATTATTTTCTGCAATTACAGCGAGAAAGCAGAACTTGGACCAGTTGCTGCAGCAAGAGTTGACCAGATCACTGCTGAATTGAAATCAGCAGACGGCGGCAAGGCATTCGACCCTGTTGAGCACATGAAAGCTGGCTTTATTCATTTCAAGACTGAGAAATATGAGTAAGCAAATTCATTCAAATTAAAATTTCTGCATATTTGATGTTGTAACATTATTAGTGTCTGATAATTTTTCCTGTTTTCTATTTATGTACCAACAGCACAAACCCAGCCTTATATGGTGAGCTAGCAAAGGGCCAGAGCCCTAAGGTACAAATTCCTTGTTAATTTGTTGTCTAATTTTATGATTTGTACGGTTTCTGATGAGTTCTATTGTCCTAAATGTGTAAACAGTTCATGGTTTTCGCGTGCTCTGACTCACGAGTCTGCCCATCCCATGTCCTCAACTTCCAACCTGGTGAGGCATTCATGGTTCGTAACATCGCCAACATGGTCCCTGCTTATGACAAGGTCAGTTACAAATCGATCAACTAGTCGATTATTTCGCTCTGGAATTGTGTTTTTTAAAAATAAAGATGGAATTGAATTTTTACAGGTCAGGTACTCTGGAGTAGGAGCAGCCATTGAATACGCCGTTCTTCATCTTAAGGTGGAGAACATCGTTGTCATTGGCCACAGTGCTTGTGGAGGTATCAAAGGTCTCATGTCACTACCTGAAGATGGTAGTGAATCAACGTACGTCACTCTATAAATCTATTCATTCAAAACACTTATCCTTAACAGATGATTGATTAATAATCTAATATACGCAGTGCCTTTATTGAGGATTGGGTAAAAATTTGTTTACCTGCCAAGGCAAAGGTTCTGGCCGATCACGGAGGGAAAGAATTTGCACATCAATGCACAGCTTGTGAGAAGGTAAAATTCAAATTTAACTTTTTGATTATCAATTAATTACATATATAGCAGTATTTTATAATTGATGAAAAATGTTGCAGGAAGCTGTGAACGTTTCACTTGGAAATCTGCTTACGTATCCATTCGTGAGAGAAGGATTGGTG</genome_strand>
        <mrna_strand>TATTACTAGTTAGTAACAAAGTAGTATAAAGGGCAAGCAAAAGCTAAAGGAAGCTCATTGAGAAATGTCAACTGCTTCCATTAACAATTGCCTTACTCTCTCCCCTGCTCAAGCTTCCCTTAAGAAACCTACTCGTCCCGTTGCCTTCGCAAGGCTTGGCAACTCTTCTTCTTCTTCTTCTATTCCAAGTCTCATCAGAAACGAGCCCGTCTTTGCTGCCCCTACTCCCATCATCAACCCCATTGTG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGAGAAGAAATGGCAAAAGAATCCTACGATCAAGCCATTGCTGCACTCGAGAAACTCCTCAG....................................................................................................................................................................................................................................................................................................................................................................................CGAGAAAGCAGAACTTGGACCAGTTGCTGCAGCAAGAGTTGACCAGATCACTGCTGAATTGAAATCAGCAGACGGCGGCAAGGCATTCGACCCTGTTGAGCACATGAAAGCTGGCTTTATTCATTTCAAGACTGAGAAATATGA..................................................................................................CACAAACCCAGCCTTATATGGTGAGCTAGCAAAGGGCCAGAGCCCTAAG....................................................................................TTCATGGTTTTCGCGTGCTCTGACTCACGAGTCTGCCCATCCCATGTCCTCAACTTCCAACCTGGTGAGGCATTCATGGTTCGTAACATCGCCAACATGGTCCCTGCTTATGACAAG.....................................................................................GTCAGGTACTCTGGAGTAGGAGCAGCCATTGAATACGCCGTTCTTCATCTTAAGGTGGAGAACATCGTTGTCATTGGCCACAGTGCTTGTGGAGGTATCAAAGGTCTCATGTCACTACCTGAAGATGGTAGTGAATCAAC.............................................................................TGCCTTTATTGAGGATTGGGTAAAAATTTGTTTACCTGCCAAGGCAAAGGTTCTGGCCGATCACGGAGGGAAAGAATTTGCACATCAATGCACAGCTTGTGAGAAG................................................................................GAAGCTGTGAACGTTTCACTTGGAAATCTGCTTACGTATCCATTCGTGAGAGAAGGATTGGTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0236E02-u8qcS/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E333504" ref_strand="+" ref_description="SGN-E333504 [cTOD-20-F4]">
      <seq>tattactagttagtaacaaagtagtataaagggcaagcaaaagctaaaggaagctcattgagaaatgtcaactgcttccattaacaattgccttactctctcccctgctcaagcttcccttaagaaacctactcgtcccgttgccttcgcaaggcttggcaactcttcttcttcttcttctattccaagtctcatcagaaacgagcccgtctttgctgcccctactcccatcatcaaccccattgtgagagaagaaatggcaaaagaatcctacgatcaagccattgctgcactcgagaaactcctcagcgagaaagcagaacttggaccaattgctgcagcaagagttgaccagatcactgctgaattgaaatc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0236E02-u8qcS/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0236E02.1" temp_strand="+" temp_description="C02HBa0236E02.1  AC215430.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0236E02 sequenced_by:kribb upload_account_name:korea">
        <position start="14636" stop="17179"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="14936" g_stop="15182" g_length="247"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="247" r_length="247" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="15183" i_stop="16379" i_length="1197">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.971" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="16380" g_stop="16441" g_length="62"/>
          <reference_exon_boundary r_type="cDNA" r_start="248" r_stop="309" r_length="62" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="16442" i_stop="16813" i_length="372">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="16814" g_stop="16879" g_length="66"/>
          <reference_exon_boundary r_type="cDNA" r_start="310" r_stop="375" r_length="66" r_score="0.985"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0236E02.1" gen_strand="+" ref_id="SGN-E333504" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>375</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0236E02.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E333504" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="14936" e_stop="15182"/>
          <exon e_start="16380" e_stop="16441"/>
          <exon e_start="16814" e_stop="16879"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TATTACTAGTTAGTAACAAAGTAGTATAAAGGGCAAGCAAAAGCTAAAGGAAGCTCATTGAGAAATGTCAACTGCTTCCATTAACAATTGCCTTACTCTCTCCCCTGCTCAAGCTTCCCTTAAGAAACCTACTCGTCCCGTTGCCTTCGCAAGGCTTGGCAACTCTTCTTCTTCTTCTTCTATTCCAAGTCTCATCAGAAACGAGCCCGTCTTTGCTGCCCCTACTCCCATCATCAACCCCATTGTGGTACGAATTTTTAACTTACATCACTGTATTTTAATCTGTTATAACAAGTTATTTATATTTGACGTTACTTAATTTATTTTTTAAGCAAGACATTTTTTTTGTCTTATCGTATTTTTTGTAACGACTTGTGTCCATGCATGCTAGTTCACGTGAAAATTCAATATTGGCATAGTTCTAAACTTTAGTTTCTAACCACCTTTATTATTGGTATTGTTATTTTTGGCCATGAATCTCCTGAAGTTAGGTGAATTGATCATGTCGCTCTAAATTGTACACGTCTATTGCGTGTACTCAATGACATATAATATATTATTGCAATCCTAAAATAAGTGTTATTTTAATTTATTTTGAACTCATTAAAATAAATATGATATTTTACTGAGTTACTTATATTTATTACTTTGATTTTTTTGAGTACTAATTTGTATTTTGAAACTTTTAAGATGACGAGAGGGTGGAAATAACAAATTAAATTTGAAAATGAACCAAAATAGAGGTGGCAATTAGGTAGAGGTTCTCGCAAAATGAATATTAAATATGTAGGGCCGTATTGTGAATTATGTGGATAATGTTTTTGCTTTCTATTTTTTTTTAAAAAAAATAATTATTACTTACAATAATCCAACGGGTATCCTCGTATGTGCCCATCCTACAAGTGATAAAATGATAAGTACCAGTCTACCATCAAGTTTGTAGGATAGAAACTATTTAGTATACATTGTTTTTGTCTTAATTTCTAGTTTTGGTATCCATCTAAATCGATACTCCATTATGTTAATTATTTCATTTCTTTCTTTTGACATCTACATCACTTTTTAATGTGGTTACCACTTGCTATAATCATACTTCACTTAGCATTTTATTTGAACTTAGTGAAAGTGAAATTTTTCCTAATAATTGGTCTAAAAATTGAAGAAGATTAAAGCCAAGAAATTGAGTTCTTCCTTCTTTCTTCCAACTTTGAAAGTACCGATAGATACTATCATATAAAAAGAAGAGGTGGTCTGACTAACTCAATGAAGTGAATTTTTCAAAAACATGCTCAGAAAAATGAGAAAAATGGAGTTTTTGAAAAGAAAAATTAACAGATATTTAAAGATAAATTTTTGAAATTTGGTTCAAAATTTATGGTCAAATATTAACTTATATTTATATATATACCTCTTCTAAAATGCTAATGAGAATTAGAATTTGCAGAGAGAAGAAATGGCAAAAGAATCCTACGATCAAGCCATTGCTGCACTCGAGAAACTCCTCAGGTTTGTACTCTCTCTACGACTCTACCTTCTAAATCACACTACTTTTTTCTCGATCAAGTGGGGCCCAAAAAATATACATACACCCACACATACGTAGACAAAAAAAATGTTAAAATTTGCGAATATGCAGAGAAAACATAATATAATCATGCAATGTTTACTCGTAAAATTCAATTTCCCGGCAATGAACATGTTACTTGGTTTCGAGTTCTCCAGATCTGCATTAATTTTACCATTCTATCATCATTTTTTTACCCCATATCTGCATTAATTTATCATGGTAATGGTGCTCAAACCACAAATCTTTTTTTTTTCTACCTGAAATATTGCTTCAATAATAATAATGGTCTAAATTATTTTCTGCAATTACAGCGAGAAAGCAGAACTTGGACCAGTTGCTGCAGCAAGAGTTGACCAGATCACTGCTGAATTGAAATC</genome_strand>
        <mrna_strand>TATTACTAGTTAGTAACAAAGTAGTATAAAGGGCAAGCAAAAGCTAAAGGAAGCTCATTGAGAAATGTCAACTGCTTCCATTAACAATTGCCTTACTCTCTCCCCTGCTCAAGCTTCCCTTAAGAAACCTACTCGTCCCGTTGCCTTCGCAAGGCTTGGCAACTCTTCTTCTTCTTCTTCTATTCCAAGTCTCATCAGAAACGAGCCCGTCTTTGCTGCCCCTACTCCCATCATCAACCCCATTGTG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGAGAAGAAATGGCAAAAGAATCCTACGATCAAGCCATTGCTGCACTCGAGAAACTCCTCAG....................................................................................................................................................................................................................................................................................................................................................................................CGAGAAAGCAGAACTTGGACCAATTGCTGCAGCAAGAGTTGACCAGATCACTGCTGAATTGAAATC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0236E02-u8qcS/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E738243" ref_strand="+" ref_description="SGN-E738243 [LC12DF09]">
      <seq>attactagttagtaacaaagtagtataaagggcaagcaaaagctaaaggaagctcattgagaaatgtcaactgcttccattaacaattgccttactctctcccctgctcaagcttcccttaagaaacctactcgtcccgttgccttcgcaaggcttggcaactcttcttcttcttcttctattccaagtctcatcagaaacgagcccgtctttgctgcccctactcccatcatcaaccccattgtgagagaagaaatggcaaaagaatcctacgatcaagccattgctgcactcgagaaactcctcagcgagaaagcagaacttggaccagttgctgcagcaagagttgaccagatcactgctgaattgaaatcagcagacggcggcaaggcattcgaccctgttgagcacatgaaagctggctttattcatttcaagactgagaaatatgacacaaacccagccttatatggtgagctagcaaagggccagagccctaagttcatggttttcgcgtgctctgactcacgagtctgcccatcccatgtcctcaacttccaacctggtgaggcattcatggttcgtaacatcgccaacatggtccctgcttatgacaaggtcaggtactctggagtaggagcagccattgaatacgccgttcttcatcttaaggtggagaacatcgttgtcattggccacagtgcttgtggaggtatcaaaggtctcatgtcactacctgaagatggtagtgaatcaactgcctttattgaggattgggtaaaaatttgtttacctgccaaggcaaaggttctggccgatcacggagggaaagaatttgcacatcaatgcacagcttgtgagaaggaagctgtgaacgtttcacttggaaatctgcttacg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0236E02-u8qcS/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0236E02.1" temp_strand="+" temp_description="C02HBa0236E02.1  AC215430.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0236E02 sequenced_by:kribb upload_account_name:korea">
        <position start="14637" stop="18129"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="14937" g_stop="15182" g_length="246"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="246" r_length="246" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="15183" i_stop="16379" i_length="1197">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.971" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="16380" g_stop="16441" g_length="62"/>
          <reference_exon_boundary r_type="cDNA" r_start="247" r_stop="308" r_length="62" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="16442" i_stop="16813" i_length="372">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="16814" g_stop="16957" g_length="144"/>
          <reference_exon_boundary r_type="cDNA" r_start="309" r_stop="452" r_length="144" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="16958" i_stop="17055" i_length="98">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="17056" g_stop="17104" g_length="49"/>
          <reference_exon_boundary r_type="cDNA" r_start="453" r_stop="501" r_length="49" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="17105" i_stop="17188" i_length="84">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.961" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="17189" g_stop="17305" g_length="117"/>
          <reference_exon_boundary r_type="cDNA" r_start="502" r_stop="618" r_length="117" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="17306" i_stop="17390" i_length="85">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.979" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="17391" g_stop="17530" g_length="140"/>
          <reference_exon_boundary r_type="cDNA" r_start="619" r_stop="758" r_length="140" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="17531" i_stop="17607" i_length="77">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.948" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="17608" g_stop="17713" g_length="106"/>
          <reference_exon_boundary r_type="cDNA" r_start="759" r_stop="864" r_length="106" r_score="1.000"/>
        </exon>
        <intron i_serial="7">
          <gDNA_intron_boundary i_start="17714" i_stop="17793" i_length="80">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="8">
          <gDNA_exon_boundary g_start="17794" g_stop="17828" g_length="35"/>
          <reference_exon_boundary r_type="cDNA" r_start="865" r_stop="899" r_length="35" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0236E02.1" gen_strand="+" ref_id="SGN-E738243" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>899</cumulative_length_of_scored_exons>
        <coverage percentage="0.999" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0236E02.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E738243" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="14937" e_stop="15182"/>
          <exon e_start="16380" e_stop="16441"/>
          <exon e_start="16814" e_stop="16957"/>
          <exon e_start="17056" e_stop="17104"/>
          <exon e_start="17189" e_stop="17305"/>
          <exon e_start="17391" e_stop="17530"/>
          <exon e_start="17608" e_stop="17713"/>
          <exon e_start="17794" e_stop="17828"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATTACTAGTTAGTAACAAAGTAGTATAAAGGGCAAGCAAAAGCTAAAGGAAGCTCATTGAGAAATGTCAACTGCTTCCATTAACAATTGCCTTACTCTCTCCCCTGCTCAAGCTTCCCTTAAGAAACCTACTCGTCCCGTTGCCTTCGCAAGGCTTGGCAACTCTTCTTCTTCTTCTTCTATTCCAAGTCTCATCAGAAACGAGCCCGTCTTTGCTGCCCCTACTCCCATCATCAACCCCATTGTGGTACGAATTTTTAACTTACATCACTGTATTTTAATCTGTTATAACAAGTTATTTATATTTGACGTTACTTAATTTATTTTTTAAGCAAGACATTTTTTTTGTCTTATCGTATTTTTTGTAACGACTTGTGTCCATGCATGCTAGTTCACGTGAAAATTCAATATTGGCATAGTTCTAAACTTTAGTTTCTAACCACCTTTATTATTGGTATTGTTATTTTTGGCCATGAATCTCCTGAAGTTAGGTGAATTGATCATGTCGCTCTAAATTGTACACGTCTATTGCGTGTACTCAATGACATATAATATATTATTGCAATCCTAAAATAAGTGTTATTTTAATTTATTTTGAACTCATTAAAATAAATATGATATTTTACTGAGTTACTTATATTTATTACTTTGATTTTTTTGAGTACTAATTTGTATTTTGAAACTTTTAAGATGACGAGAGGGTGGAAATAACAAATTAAATTTGAAAATGAACCAAAATAGAGGTGGCAATTAGGTAGAGGTTCTCGCAAAATGAATATTAAATATGTAGGGCCGTATTGTGAATTATGTGGATAATGTTTTTGCTTTCTATTTTTTTTTAAAAAAAATAATTATTACTTACAATAATCCAACGGGTATCCTCGTATGTGCCCATCCTACAAGTGATAAAATGATAAGTACCAGTCTACCATCAAGTTTGTAGGATAGAAACTATTTAGTATACATTGTTTTTGTCTTAATTTCTAGTTTTGGTATCCATCTAAATCGATACTCCATTATGTTAATTATTTCATTTCTTTCTTTTGACATCTACATCACTTTTTAATGTGGTTACCACTTGCTATAATCATACTTCACTTAGCATTTTATTTGAACTTAGTGAAAGTGAAATTTTTCCTAATAATTGGTCTAAAAATTGAAGAAGATTAAAGCCAAGAAATTGAGTTCTTCCTTCTTTCTTCCAACTTTGAAAGTACCGATAGATACTATCATATAAAAAGAAGAGGTGGTCTGACTAACTCAATGAAGTGAATTTTTCAAAAACATGCTCAGAAAAATGAGAAAAATGGAGTTTTTGAAAAGAAAAATTAACAGATATTTAAAGATAAATTTTTGAAATTTGGTTCAAAATTTATGGTCAAATATTAACTTATATTTATATATATACCTCTTCTAAAATGCTAATGAGAATTAGAATTTGCAGAGAGAAGAAATGGCAAAAGAATCCTACGATCAAGCCATTGCTGCACTCGAGAAACTCCTCAGGTTTGTACTCTCTCTACGACTCTACCTTCTAAATCACACTACTTTTTTCTCGATCAAGTGGGGCCCAAAAAATATACATACACCCACACATACGTAGACAAAAAAAATGTTAAAATTTGCGAATATGCAGAGAAAACATAATATAATCATGCAATGTTTACTCGTAAAATTCAATTTCCCGGCAATGAACATGTTACTTGGTTTCGAGTTCTCCAGATCTGCATTAATTTTACCATTCTATCATCATTTTTTTACCCCATATCTGCATTAATTTATCATGGTAATGGTGCTCAAACCACAAATCTTTTTTTTTTCTACCTGAAATATTGCTTCAATAATAATAATGGTCTAAATTATTTTCTGCAATTACAGCGAGAAAGCAGAACTTGGACCAGTTGCTGCAGCAAGAGTTGACCAGATCACTGCTGAATTGAAATCAGCAGACGGCGGCAAGGCATTCGACCCTGTTGAGCACATGAAAGCTGGCTTTATTCATTTCAAGACTGAGAAATATGAGTAAGCAAATTCATTCAAATTAAAATTTCTGCATATTTGATGTTGTAACATTATTAGTGTCTGATAATTTTTCCTGTTTTCTATTTATGTACCAACAGCACAAACCCAGCCTTATATGGTGAGCTAGCAAAGGGCCAGAGCCCTAAGGTACAAATTCCTTGTTAATTTGTTGTCTAATTTTATGATTTGTACGGTTTCTGATGAGTTCTATTGTCCTAAATGTGTAAACAGTTCATGGTTTTCGCGTGCTCTGACTCACGAGTCTGCCCATCCCATGTCCTCAACTTCCAACCTGGTGAGGCATTCATGGTTCGTAACATCGCCAACATGGTCCCTGCTTATGACAAGGTCAGTTACAAATCGATCAACTAGTCGATTATTTCGCTCTGGAATTGTGTTTTTTAAAAATAAAGATGGAATTGAATTTTTACAGGTCAGGTACTCTGGAGTAGGAGCAGCCATTGAATACGCCGTTCTTCATCTTAAGGTGGAGAACATCGTTGTCATTGGCCACAGTGCTTGTGGAGGTATCAAAGGTCTCATGTCACTACCTGAAGATGGTAGTGAATCAACGTACGTCACTCTATAAATCTATTCATTCAAAACACTTATCCTTAACAGATGATTGATTAATAATCTAATATACGCAGTGCCTTTATTGAGGATTGGGTAAAAATTTGTTTACCTGCCAAGGCAAAGGTTCTGGCCGATCACGGAGGGAAAGAATTTGCACATCAATGCACAGCTTGTGAGAAGGTAAAATTCAAATTTAACTTTTTGATTATCAATTAATTACATATATAGCAGTATTTTATAATTGATGAAAAATGTTGCAGGAAGCTGTGAACGTTTCACTTGGAAATCTGCTTAC</genome_strand>
        <mrna_strand>ATTACTAGTTAGTAACAAAGTAGTATAAAGGGCAAGCAAAAGCTAAAGGAAGCTCATTGAGAAATGTCAACTGCTTCCATTAACAATTGCCTTACTCTCTCCCCTGCTCAAGCTTCCCTTAAGAAACCTACTCGTCCCGTTGCCTTCGCAAGGCTTGGCAACTCTTCTTCTTCTTCTTCTATTCCAAGTCTCATCAGAAACGAGCCCGTCTTTGCTGCCCCTACTCCCATCATCAACCCCATTGTG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGAGAAGAAATGGCAAAAGAATCCTACGATCAAGCCATTGCTGCACTCGAGAAACTCCTCAG....................................................................................................................................................................................................................................................................................................................................................................................CGAGAAAGCAGAACTTGGACCAGTTGCTGCAGCAAGAGTTGACCAGATCACTGCTGAATTGAAATCAGCAGACGGCGGCAAGGCATTCGACCCTGTTGAGCACATGAAAGCTGGCTTTATTCATTTCAAGACTGAGAAATATGA..................................................................................................CACAAACCCAGCCTTATATGGTGAGCTAGCAAAGGGCCAGAGCCCTAAG....................................................................................TTCATGGTTTTCGCGTGCTCTGACTCACGAGTCTGCCCATCCCATGTCCTCAACTTCCAACCTGGTGAGGCATTCATGGTTCGTAACATCGCCAACATGGTCCCTGCTTATGACAAG.....................................................................................GTCAGGTACTCTGGAGTAGGAGCAGCCATTGAATACGCCGTTCTTCATCTTAAGGTGGAGAACATCGTTGTCATTGGCCACAGTGCTTGTGGAGGTATCAAAGGTCTCATGTCACTACCTGAAGATGGTAGTGAATCAAC.............................................................................TGCCTTTATTGAGGATTGGGTAAAAATTTGTTTACCTGCCAAGGCAAAGGTTCTGGCCGATCACGGAGGGAAAGAATTTGCACATCAATGCACAGCTTGTGAGAAG................................................................................GAAGCTGTGAACGTTTCACTTGGAAATCTGCTTAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0236E02-u8qcS/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E736356" ref_strand="+" ref_description="SGN-E736356 [LC05BH06]">
      <seq>attactagttagtaacaaagtagtataaagggcaagcaaaagctaaaggaagctcattgagaaatgtcaactgcttccattaacaattgccttactctctcccctgctcaagcttcccttaagaaacctactcgtcccgttgccttcgcaaggcttggcaactcttcttcttcttcttctattccaagtctcatcagaaacgagcccgtctttgctgcccctactcccatcatcaaccccattgtgagagaagaaatggcaaaagaatcctacgatcaagccattgctgcactcgagaaactcctcagcgagaaagcagaacttggaccagttgctgcagcaagagttgaccagatcactgctgaattgaaatcagcagacggcggcaaggcattcgaccctgttgagcacatgaaagctggctttattcatttcaagactgagaaatatgacacaaacccagccttatatggtgagctagcaaagggccagagccctaagttcatggttttcgcgtgctctgactcacgagtctgcccatcccatgtcctcaacttccaacctggtgaggcattcatggttcgtaacatcgccaacatggtccctgcttatgacaaggtcaggtactctggagtaggagcagccattgaatacgccgttcttcatcttaaggtggagaacatcgttgtcattggccacagtgcttgtggaggtatcaaaggtctcatgtcactacctgaagatggtagtgaatcaactgcctttattgaggattgggtaaaaatttgtttacctgccaaagcaaaagttctggccgatcacggagggaaagaatttgcacatcaatgcacagcttgtgagaagaagctgtgaacgtttcactgggaaatctgct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0236E02-u8qcS/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0236E02.1" temp_strand="+" temp_description="C02HBa0236E02.1  AC215430.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0236E02 sequenced_by:kribb upload_account_name:korea">
        <position start="14637" stop="18125"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="14937" g_stop="15182" g_length="246"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="246" r_length="246" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="15183" i_stop="16379" i_length="1197">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.971" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="16380" g_stop="16441" g_length="62"/>
          <reference_exon_boundary r_type="cDNA" r_start="247" r_stop="308" r_length="62" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="16442" i_stop="16813" i_length="372">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="16814" g_stop="16957" g_length="144"/>
          <reference_exon_boundary r_type="cDNA" r_start="309" r_stop="452" r_length="144" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="16958" i_stop="17055" i_length="98">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="17056" g_stop="17104" g_length="49"/>
          <reference_exon_boundary r_type="cDNA" r_start="453" r_stop="501" r_length="49" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="17105" i_stop="17188" i_length="84">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.961" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="17189" g_stop="17305" g_length="117"/>
          <reference_exon_boundary r_type="cDNA" r_start="502" r_stop="618" r_length="117" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="17306" i_stop="17390" i_length="85">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.979" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="17391" g_stop="17530" g_length="140"/>
          <reference_exon_boundary r_type="cDNA" r_start="619" r_stop="758" r_length="140" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="17531" i_stop="17607" i_length="77">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.948" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="17608" g_stop="17713" g_length="106"/>
          <reference_exon_boundary r_type="cDNA" r_start="759" r_stop="863" r_length="105" r_score="0.972"/>
        </exon>
        <intron i_serial="7">
          <gDNA_intron_boundary i_start="17714" i_stop="17793" i_length="80">
            <donor d_prob="1.000" d_score="0.98"/>
            <acceptor a_prob="0.997" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="8">
          <gDNA_exon_boundary g_start="17794" g_stop="17825" g_length="32"/>
          <reference_exon_boundary r_type="cDNA" r_start="864" r_stop="895" r_length="32" r_score="0.969"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0236E02.1" gen_strand="+" ref_id="SGN-E736356" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>896</cumulative_length_of_scored_exons>
        <coverage percentage="1.001" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0236E02.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E736356" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="14937" e_stop="15182"/>
          <exon e_start="16380" e_stop="16441"/>
          <exon e_start="16814" e_stop="16957"/>
          <exon e_start="17056" e_stop="17104"/>
          <exon e_start="17189" e_stop="17305"/>
          <exon e_start="17391" e_stop="17530"/>
          <exon e_start="17608" e_stop="17713"/>
          <exon e_start="17794" e_stop="17825"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATTACTAGTTAGTAACAAAGTAGTATAAAGGGCAAGCAAAAGCTAAAGGAAGCTCATTGAGAAATGTCAACTGCTTCCATTAACAATTGCCTTACTCTCTCCCCTGCTCAAGCTTCCCTTAAGAAACCTACTCGTCCCGTTGCCTTCGCAAGGCTTGGCAACTCTTCTTCTTCTTCTTCTATTCCAAGTCTCATCAGAAACGAGCCCGTCTTTGCTGCCCCTACTCCCATCATCAACCCCATTGTGGTACGAATTTTTAACTTACATCACTGTATTTTAATCTGTTATAACAAGTTATTTATATTTGACGTTACTTAATTTATTTTTTAAGCAAGACATTTTTTTTGTCTTATCGTATTTTTTGTAACGACTTGTGTCCATGCATGCTAGTTCACGTGAAAATTCAATATTGGCATAGTTCTAAACTTTAGTTTCTAACCACCTTTATTATTGGTATTGTTATTTTTGGCCATGAATCTCCTGAAGTTAGGTGAATTGATCATGTCGCTCTAAATTGTACACGTCTATTGCGTGTACTCAATGACATATAATATATTATTGCAATCCTAAAATAAGTGTTATTTTAATTTATTTTGAACTCATTAAAATAAATATGATATTTTACTGAGTTACTTATATTTATTACTTTGATTTTTTTGAGTACTAATTTGTATTTTGAAACTTTTAAGATGACGAGAGGGTGGAAATAACAAATTAAATTTGAAAATGAACCAAAATAGAGGTGGCAATTAGGTAGAGGTTCTCGCAAAATGAATATTAAATATGTAGGGCCGTATTGTGAATTATGTGGATAATGTTTTTGCTTTCTATTTTTTTTTAAAAAAAATAATTATTACTTACAATAATCCAACGGGTATCCTCGTATGTGCCCATCCTACAAGTGATAAAATGATAAGTACCAGTCTACCATCAAGTTTGTAGGATAGAAACTATTTAGTATACATTGTTTTTGTCTTAATTTCTAGTTTTGGTATCCATCTAAATCGATACTCCATTATGTTAATTATTTCATTTCTTTCTTTTGACATCTACATCACTTTTTAATGTGGTTACCACTTGCTATAATCATACTTCACTTAGCATTTTATTTGAACTTAGTGAAAGTGAAATTTTTCCTAATAATTGGTCTAAAAATTGAAGAAGATTAAAGCCAAGAAATTGAGTTCTTCCTTCTTTCTTCCAACTTTGAAAGTACCGATAGATACTATCATATAAAAAGAAGAGGTGGTCTGACTAACTCAATGAAGTGAATTTTTCAAAAACATGCTCAGAAAAATGAGAAAAATGGAGTTTTTGAAAAGAAAAATTAACAGATATTTAAAGATAAATTTTTGAAATTTGGTTCAAAATTTATGGTCAAATATTAACTTATATTTATATATATACCTCTTCTAAAATGCTAATGAGAATTAGAATTTGCAGAGAGAAGAAATGGCAAAAGAATCCTACGATCAAGCCATTGCTGCACTCGAGAAACTCCTCAGGTTTGTACTCTCTCTACGACTCTACCTTCTAAATCACACTACTTTTTTCTCGATCAAGTGGGGCCCAAAAAATATACATACACCCACACATACGTAGACAAAAAAAATGTTAAAATTTGCGAATATGCAGAGAAAACATAATATAATCATGCAATGTTTACTCGTAAAATTCAATTTCCCGGCAATGAACATGTTACTTGGTTTCGAGTTCTCCAGATCTGCATTAATTTTACCATTCTATCATCATTTTTTTACCCCATATCTGCATTAATTTATCATGGTAATGGTGCTCAAACCACAAATCTTTTTTTTTTCTACCTGAAATATTGCTTCAATAATAATAATGGTCTAAATTATTTTCTGCAATTACAGCGAGAAAGCAGAACTTGGACCAGTTGCTGCAGCAAGAGTTGACCAGATCACTGCTGAATTGAAATCAGCAGACGGCGGCAAGGCATTCGACCCTGTTGAGCACATGAAAGCTGGCTTTATTCATTTCAAGACTGAGAAATATGAGTAAGCAAATTCATTCAAATTAAAATTTCTGCATATTTGATGTTGTAACATTATTAGTGTCTGATAATTTTTCCTGTTTTCTATTTATGTACCAACAGCACAAACCCAGCCTTATATGGTGAGCTAGCAAAGGGCCAGAGCCCTAAGGTACAAATTCCTTGTTAATTTGTTGTCTAATTTTATGATTTGTACGGTTTCTGATGAGTTCTATTGTCCTAAATGTGTAAACAGTTCATGGTTTTCGCGTGCTCTGACTCACGAGTCTGCCCATCCCATGTCCTCAACTTCCAACCTGGTGAGGCATTCATGGTTCGTAACATCGCCAACATGGTCCCTGCTTATGACAAGGTCAGTTACAAATCGATCAACTAGTCGATTATTTCGCTCTGGAATTGTGTTTTTTAAAAATAAAGATGGAATTGAATTTTTACAGGTCAGGTACTCTGGAGTAGGAGCAGCCATTGAATACGCCGTTCTTCATCTTAAGGTGGAGAACATCGTTGTCATTGGCCACAGTGCTTGTGGAGGTATCAAAGGTCTCATGTCACTACCTGAAGATGGTAGTGAATCAACGTACGTCACTCTATAAATCTATTCATTCAAAACACTTATCCTTAACAGATGATTGATTAATAATCTAATATACGCAGTGCCTTTATTGAGGATTGGGTAAAAATTTGTTTACCTGCCAAGGCAAAGGTTCTGGCCGATCACGGAGGGAAAGAATTTGCACATCAATGCACAGCTTGTGAGAAGGTAAAATTCAAATTTAACTTTTTGATTATCAATTAATTACATATATAGCAGTATTTTATAATTGATGAAAAATGTTGCAGGAAGCTGTGAACGTTTCACTTGGAAATCTGCT</genome_strand>
        <mrna_strand>ATTACTAGTTAGTAACAAAGTAGTATAAAGGGCAAGCAAAAGCTAAAGGAAGCTCATTGAGAAATGTCAACTGCTTCCATTAACAATTGCCTTACTCTCTCCCCTGCTCAAGCTTCCCTTAAGAAACCTACTCGTCCCGTTGCCTTCGCAAGGCTTGGCAACTCTTCTTCTTCTTCTTCTATTCCAAGTCTCATCAGAAACGAGCCCGTCTTTGCTGCCCCTACTCCCATCATCAACCCCATTGTG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGAGAAGAAATGGCAAAAGAATCCTACGATCAAGCCATTGCTGCACTCGAGAAACTCCTCAG....................................................................................................................................................................................................................................................................................................................................................................................CGAGAAAGCAGAACTTGGACCAGTTGCTGCAGCAAGAGTTGACCAGATCACTGCTGAATTGAAATCAGCAGACGGCGGCAAGGCATTCGACCCTGTTGAGCACATGAAAGCTGGCTTTATTCATTTCAAGACTGAGAAATATGA..................................................................................................CACAAACCCAGCCTTATATGGTGAGCTAGCAAAGGGCCAGAGCCCTAAG....................................................................................TTCATGGTTTTCGCGTGCTCTGACTCACGAGTCTGCCCATCCCATGTCCTCAACTTCCAACCTGGTGAGGCATTCATGGTTCGTAACATCGCCAACATGGTCCCTGCTTATGACAAG.....................................................................................GTCAGGTACTCTGGAGTAGGAGCAGCCATTGAATACGCCGTTCTTCATCTTAAGGTGGAGAACATCGTTGTCATTGGCCACAGTGCTTGTGGAGGTATCAAAGGTCTCATGTCACTACCTGAAGATGGTAGTGAATCAAC.............................................................................TGCCTTTATTGAGGATTGGGTAAAAATTTGTTTACCTGCCAAAGCAAAAGTTCTGGCCGATCACGGAGGGAAAGAATTTGCACATCAATGCACAGCTTGTGAGAA-................................................................................GAAGCTGTGAACGTTTCACTGGGAAATCTGCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0236E02-u8qcS/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E729975" ref_strand="+" ref_description="SGN-E729975 [LA22CF11]">
      <seq>attactagttagtaacaaagtagtataaagggcaagcaaaagctaaaggaagctcattgagaaatgtcaactgcttccattaacaattgccttactctctcccctgctcaagcttcccttaagaaacctactcgtcccgttgccttcgcaaggcttggcaactcttcttcttcttcttctattccaagtctcatcagaaacgagcccgtctttgctgcccctactcccatcatcaaccccattgtgagagaagaaatggcaaaagaatcctacgatcaagccattgctgcactcgagaaactcctcagcgagaaagcagaacttggaccagttgctgcagcaagagttgaccagatcactgctgaattgaaatcagcagacggcggcaaggcattcgaccctgttgagcacatgaaagctggctttattcatttcaagactgagaaatatgacacaaacccagccttatatggtgagctagcaaagggccagagccctaagttcatggttttcgcgtgctctgactcacgagtctgcccatcccatgtcctcaacttccaacctggtgaggcattcatggttcgtaacatcgccaacatggtccctgcttatgacaaggtcaggtactctggagtaggagcagccattgaatacgccgttcttcatcttaaggtggagaacatcgttgtcattggccacagtgcttgtggaggtatcaaaggtctcatgtcactacctgaagatggtaatgaatcaactgcctttattgaggattgggtaaaaatttgtttacctg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0236E02-u8qcS/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0236E02.1" temp_strand="+" temp_description="C02HBa0236E02.1  AC215430.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0236E02 sequenced_by:kribb upload_account_name:korea">
        <position start="14637" stop="17945"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="14937" g_stop="15182" g_length="246"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="246" r_length="246" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="15183" i_stop="16379" i_length="1197">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.971" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="16380" g_stop="16441" g_length="62"/>
          <reference_exon_boundary r_type="cDNA" r_start="247" r_stop="308" r_length="62" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="16442" i_stop="16813" i_length="372">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="16814" g_stop="16957" g_length="144"/>
          <reference_exon_boundary r_type="cDNA" r_start="309" r_stop="452" r_length="144" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="16958" i_stop="17055" i_length="98">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="17056" g_stop="17104" g_length="49"/>
          <reference_exon_boundary r_type="cDNA" r_start="453" r_stop="501" r_length="49" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="17105" i_stop="17188" i_length="84">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.961" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="17189" g_stop="17305" g_length="117"/>
          <reference_exon_boundary r_type="cDNA" r_start="502" r_stop="618" r_length="117" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="17306" i_stop="17390" i_length="85">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.979" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="17391" g_stop="17530" g_length="140"/>
          <reference_exon_boundary r_type="cDNA" r_start="619" r_stop="758" r_length="140" r_score="0.993"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="17531" i_stop="17607" i_length="77">
            <donor d_prob="0.999" d_score="0.98"/>
            <acceptor a_prob="0.948" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="17608" g_stop="17645" g_length="38"/>
          <reference_exon_boundary r_type="cDNA" r_start="759" r_stop="796" r_length="38" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0236E02.1" gen_strand="+" ref_id="SGN-E729975" ref_strand="+">
        <total_alignment_score>0.999</total_alignment_score>
        <cumulative_length_of_scored_exons>796</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0236E02.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E729975" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="14937" e_stop="15182"/>
          <exon e_start="16380" e_stop="16441"/>
          <exon e_start="16814" e_stop="16957"/>
          <exon e_start="17056" e_stop="17104"/>
          <exon e_start="17189" e_stop="17305"/>
          <exon e_start="17391" e_stop="17530"/>
          <exon e_start="17608" e_stop="17645"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATTACTAGTTAGTAACAAAGTAGTATAAAGGGCAAGCAAAAGCTAAAGGAAGCTCATTGAGAAATGTCAACTGCTTCCATTAACAATTGCCTTACTCTCTCCCCTGCTCAAGCTTCCCTTAAGAAACCTACTCGTCCCGTTGCCTTCGCAAGGCTTGGCAACTCTTCTTCTTCTTCTTCTATTCCAAGTCTCATCAGAAACGAGCCCGTCTTTGCTGCCCCTACTCCCATCATCAACCCCATTGTGGTACGAATTTTTAACTTACATCACTGTATTTTAATCTGTTATAACAAGTTATTTATATTTGACGTTACTTAATTTATTTTTTAAGCAAGACATTTTTTTTGTCTTATCGTATTTTTTGTAACGACTTGTGTCCATGCATGCTAGTTCACGTGAAAATTCAATATTGGCATAGTTCTAAACTTTAGTTTCTAACCACCTTTATTATTGGTATTGTTATTTTTGGCCATGAATCTCCTGAAGTTAGGTGAATTGATCATGTCGCTCTAAATTGTACACGTCTATTGCGTGTACTCAATGACATATAATATATTATTGCAATCCTAAAATAAGTGTTATTTTAATTTATTTTGAACTCATTAAAATAAATATGATATTTTACTGAGTTACTTATATTTATTACTTTGATTTTTTTGAGTACTAATTTGTATTTTGAAACTTTTAAGATGACGAGAGGGTGGAAATAACAAATTAAATTTGAAAATGAACCAAAATAGAGGTGGCAATTAGGTAGAGGTTCTCGCAAAATGAATATTAAATATGTAGGGCCGTATTGTGAATTATGTGGATAATGTTTTTGCTTTCTATTTTTTTTTAAAAAAAATAATTATTACTTACAATAATCCAACGGGTATCCTCGTATGTGCCCATCCTACAAGTGATAAAATGATAAGTACCAGTCTACCATCAAGTTTGTAGGATAGAAACTATTTAGTATACATTGTTTTTGTCTTAATTTCTAGTTTTGGTATCCATCTAAATCGATACTCCATTATGTTAATTATTTCATTTCTTTCTTTTGACATCTACATCACTTTTTAATGTGGTTACCACTTGCTATAATCATACTTCACTTAGCATTTTATTTGAACTTAGTGAAAGTGAAATTTTTCCTAATAATTGGTCTAAAAATTGAAGAAGATTAAAGCCAAGAAATTGAGTTCTTCCTTCTTTCTTCCAACTTTGAAAGTACCGATAGATACTATCATATAAAAAGAAGAGGTGGTCTGACTAACTCAATGAAGTGAATTTTTCAAAAACATGCTCAGAAAAATGAGAAAAATGGAGTTTTTGAAAAGAAAAATTAACAGATATTTAAAGATAAATTTTTGAAATTTGGTTCAAAATTTATGGTCAAATATTAACTTATATTTATATATATACCTCTTCTAAAATGCTAATGAGAATTAGAATTTGCAGAGAGAAGAAATGGCAAAAGAATCCTACGATCAAGCCATTGCTGCACTCGAGAAACTCCTCAGGTTTGTACTCTCTCTACGACTCTACCTTCTAAATCACACTACTTTTTTCTCGATCAAGTGGGGCCCAAAAAATATACATACACCCACACATACGTAGACAAAAAAAATGTTAAAATTTGCGAATATGCAGAGAAAACATAATATAATCATGCAATGTTTACTCGTAAAATTCAATTTCCCGGCAATGAACATGTTACTTGGTTTCGAGTTCTCCAGATCTGCATTAATTTTACCATTCTATCATCATTTTTTTACCCCATATCTGCATTAATTTATCATGGTAATGGTGCTCAAACCACAAATCTTTTTTTTTTCTACCTGAAATATTGCTTCAATAATAATAATGGTCTAAATTATTTTCTGCAATTACAGCGAGAAAGCAGAACTTGGACCAGTTGCTGCAGCAAGAGTTGACCAGATCACTGCTGAATTGAAATCAGCAGACGGCGGCAAGGCATTCGACCCTGTTGAGCACATGAAAGCTGGCTTTATTCATTTCAAGACTGAGAAATATGAGTAAGCAAATTCATTCAAATTAAAATTTCTGCATATTTGATGTTGTAACATTATTAGTGTCTGATAATTTTTCCTGTTTTCTATTTATGTACCAACAGCACAAACCCAGCCTTATATGGTGAGCTAGCAAAGGGCCAGAGCCCTAAGGTACAAATTCCTTGTTAATTTGTTGTCTAATTTTATGATTTGTACGGTTTCTGATGAGTTCTATTGTCCTAAATGTGTAAACAGTTCATGGTTTTCGCGTGCTCTGACTCACGAGTCTGCCCATCCCATGTCCTCAACTTCCAACCTGGTGAGGCATTCATGGTTCGTAACATCGCCAACATGGTCCCTGCTTATGACAAGGTCAGTTACAAATCGATCAACTAGTCGATTATTTCGCTCTGGAATTGTGTTTTTTAAAAATAAAGATGGAATTGAATTTTTACAGGTCAGGTACTCTGGAGTAGGAGCAGCCATTGAATACGCCGTTCTTCATCTTAAGGTGGAGAACATCGTTGTCATTGGCCACAGTGCTTGTGGAGGTATCAAAGGTCTCATGTCACTACCTGAAGATGGTAGTGAATCAACGTACGTCACTCTATAAATCTATTCATTCAAAACACTTATCCTTAACAGATGATTGATTAATAATCTAATATACGCAGTGCCTTTATTGAGGATTGGGTAAAAATTTGTTTACCTG</genome_strand>
        <mrna_strand>ATTACTAGTTAGTAACAAAGTAGTATAAAGGGCAAGCAAAAGCTAAAGGAAGCTCATTGAGAAATGTCAACTGCTTCCATTAACAATTGCCTTACTCTCTCCCCTGCTCAAGCTTCCCTTAAGAAACCTACTCGTCCCGTTGCCTTCGCAAGGCTTGGCAACTCTTCTTCTTCTTCTTCTATTCCAAGTCTCATCAGAAACGAGCCCGTCTTTGCTGCCCCTACTCCCATCATCAACCCCATTGTG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGAGAAGAAATGGCAAAAGAATCCTACGATCAAGCCATTGCTGCACTCGAGAAACTCCTCAG....................................................................................................................................................................................................................................................................................................................................................................................CGAGAAAGCAGAACTTGGACCAGTTGCTGCAGCAAGAGTTGACCAGATCACTGCTGAATTGAAATCAGCAGACGGCGGCAAGGCATTCGACCCTGTTGAGCACATGAAAGCTGGCTTTATTCATTTCAAGACTGAGAAATATGA..................................................................................................CACAAACCCAGCCTTATATGGTGAGCTAGCAAAGGGCCAGAGCCCTAAG....................................................................................TTCATGGTTTTCGCGTGCTCTGACTCACGAGTCTGCCCATCCCATGTCCTCAACTTCCAACCTGGTGAGGCATTCATGGTTCGTAACATCGCCAACATGGTCCCTGCTTATGACAAG.....................................................................................GTCAGGTACTCTGGAGTAGGAGCAGCCATTGAATACGCCGTTCTTCATCTTAAGGTGGAGAACATCGTTGTCATTGGCCACAGTGCTTGTGGAGGTATCAAAGGTCTCATGTCACTACCTGAAGATGGTAATGAATCAAC.............................................................................TGCCTTTATTGAGGATTGGGTAAAAATTTGTTTACCTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0236E02-u8qcS/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E475742" ref_strand="+" ref_description="SGN-E475742 [cSTB-41-J21]">
      <seq>attactagtgagtaacaaagtggtataaagggcaagcaaaagccaaaggaagctcattgagaaatgtcaactgcttccattaacaattgccttactatctcccctgctcaagcttcccttaagaaacctactcgtcccgttgccttcgcaaggcttggcaactcttcttcttcttcttctattccaagtctcatcagaaacgagcccgtcttcgctgcccctactcccatcatcaaccccattgtgagagaagaaatggcaaaagaatcctacgatcaggccattgctgcactcgagaaactcctcactgagaaagcagaacttggaccagttgctgcagcaagagttgaccagattactgctgaattgaaatcagcagatggcagcaaggccttcgaccctgttgagcacatgaaagctggctttattcatttcaaaactgagaaatatgatacaaac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0236E02-u8qcS/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0236E02.1" temp_strand="+" temp_description="C02HBa0236E02.1  AC215430.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0236E02 sequenced_by:kribb upload_account_name:korea">
        <position start="14637" stop="17260"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="14937" g_stop="15182" g_length="246"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="246" r_length="246" r_score="0.980"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="15183" i_stop="16379" i_length="1197">
            <donor d_prob="1.000" d_score="0.98"/>
            <acceptor a_prob="0.971" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="16380" g_stop="16441" g_length="62"/>
          <reference_exon_boundary r_type="cDNA" r_start="247" r_stop="308" r_length="62" r_score="0.968"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="16442" i_stop="16813" i_length="372">
            <donor d_prob="0.999" d_score="0.96"/>
            <acceptor a_prob="1.000" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="16814" g_stop="16957" g_length="144"/>
          <reference_exon_boundary r_type="cDNA" r_start="309" r_stop="452" r_length="144" r_score="0.958"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="16958" i_stop="17055" i_length="98">
            <donor d_prob="0.999" d_score="0.98"/>
            <acceptor a_prob="0.999" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="17056" g_stop="17062" g_length="7"/>
          <reference_exon_boundary r_type="cDNA" r_start="453" r_stop="459" r_length="7" r_score="0.857"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0236E02.1" gen_strand="+" ref_id="SGN-E475742" ref_strand="+">
        <total_alignment_score>0.971</total_alignment_score>
        <cumulative_length_of_scored_exons>459</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0236E02.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E475742" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="14937" e_stop="15182"/>
          <exon e_start="16380" e_stop="16441"/>
          <exon e_start="16814" e_stop="16957"/>
          <exon e_start="17056" e_stop="17062"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATTACTAGTTAGTAACAAAGTAGTATAAAGGGCAAGCAAAAGCTAAAGGAAGCTCATTGAGAAATGTCAACTGCTTCCATTAACAATTGCCTTACTCTCTCCCCTGCTCAAGCTTCCCTTAAGAAACCTACTCGTCCCGTTGCCTTCGCAAGGCTTGGCAACTCTTCTTCTTCTTCTTCTATTCCAAGTCTCATCAGAAACGAGCCCGTCTTTGCTGCCCCTACTCCCATCATCAACCCCATTGTGGTACGAATTTTTAACTTACATCACTGTATTTTAATCTGTTATAACAAGTTATTTATATTTGACGTTACTTAATTTATTTTTTAAGCAAGACATTTTTTTTGTCTTATCGTATTTTTTGTAACGACTTGTGTCCATGCATGCTAGTTCACGTGAAAATTCAATATTGGCATAGTTCTAAACTTTAGTTTCTAACCACCTTTATTATTGGTATTGTTATTTTTGGCCATGAATCTCCTGAAGTTAGGTGAATTGATCATGTCGCTCTAAATTGTACACGTCTATTGCGTGTACTCAATGACATATAATATATTATTGCAATCCTAAAATAAGTGTTATTTTAATTTATTTTGAACTCATTAAAATAAATATGATATTTTACTGAGTTACTTATATTTATTACTTTGATTTTTTTGAGTACTAATTTGTATTTTGAAACTTTTAAGATGACGAGAGGGTGGAAATAACAAATTAAATTTGAAAATGAACCAAAATAGAGGTGGCAATTAGGTAGAGGTTCTCGCAAAATGAATATTAAATATGTAGGGCCGTATTGTGAATTATGTGGATAATGTTTTTGCTTTCTATTTTTTTTTAAAAAAAATAATTATTACTTACAATAATCCAACGGGTATCCTCGTATGTGCCCATCCTACAAGTGATAAAATGATAAGTACCAGTCTACCATCAAGTTTGTAGGATAGAAACTATTTAGTATACATTGTTTTTGTCTTAATTTCTAGTTTTGGTATCCATCTAAATCGATACTCCATTATGTTAATTATTTCATTTCTTTCTTTTGACATCTACATCACTTTTTAATGTGGTTACCACTTGCTATAATCATACTTCACTTAGCATTTTATTTGAACTTAGTGAAAGTGAAATTTTTCCTAATAATTGGTCTAAAAATTGAAGAAGATTAAAGCCAAGAAATTGAGTTCTTCCTTCTTTCTTCCAACTTTGAAAGTACCGATAGATACTATCATATAAAAAGAAGAGGTGGTCTGACTAACTCAATGAAGTGAATTTTTCAAAAACATGCTCAGAAAAATGAGAAAAATGGAGTTTTTGAAAAGAAAAATTAACAGATATTTAAAGATAAATTTTTGAAATTTGGTTCAAAATTTATGGTCAAATATTAACTTATATTTATATATATACCTCTTCTAAAATGCTAATGAGAATTAGAATTTGCAGAGAGAAGAAATGGCAAAAGAATCCTACGATCAAGCCATTGCTGCACTCGAGAAACTCCTCAGGTTTGTACTCTCTCTACGACTCTACCTTCTAAATCACACTACTTTTTTCTCGATCAAGTGGGGCCCAAAAAATATACATACACCCACACATACGTAGACAAAAAAAATGTTAAAATTTGCGAATATGCAGAGAAAACATAATATAATCATGCAATGTTTACTCGTAAAATTCAATTTCCCGGCAATGAACATGTTACTTGGTTTCGAGTTCTCCAGATCTGCATTAATTTTACCATTCTATCATCATTTTTTTACCCCATATCTGCATTAATTTATCATGGTAATGGTGCTCAAACCACAAATCTTTTTTTTTTCTACCTGAAATATTGCTTCAATAATAATAATGGTCTAAATTATTTTCTGCAATTACAGCGAGAAAGCAGAACTTGGACCAGTTGCTGCAGCAAGAGTTGACCAGATCACTGCTGAATTGAAATCAGCAGACGGCGGCAAGGCATTCGACCCTGTTGAGCACATGAAAGCTGGCTTTATTCATTTCAAGACTGAGAAATATGAGTAAGCAAATTCATTCAAATTAAAATTTCTGCATATTTGATGTTGTAACATTATTAGTGTCTGATAATTTTTCCTGTTTTCTATTTATGTACCAACAGCACAAAC</genome_strand>
        <mrna_strand>ATTACTAGTGAGTAACAAAGTGGTATAAAGGGCAAGCAAAAGCCAAAGGAAGCTCATTGAGAAATGTCAACTGCTTCCATTAACAATTGCCTTACTATCTCCCCTGCTCAAGCTTCCCTTAAGAAACCTACTCGTCCCGTTGCCTTCGCAAGGCTTGGCAACTCTTCTTCTTCTTCTTCTATTCCAAGTCTCATCAGAAACGAGCCCGTCTTCGCTGCCCCTACTCCCATCATCAACCCCATTGTG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGAGAAGAAATGGCAAAAGAATCCTACGATCAGGCCATTGCTGCACTCGAGAAACTCCTCAC....................................................................................................................................................................................................................................................................................................................................................................................TGAGAAAGCAGAACTTGGACCAGTTGCTGCAGCAAGAGTTGACCAGATTACTGCTGAATTGAAATCAGCAGATGGCAGCAAGGCCTTCGACCCTGTTGAGCACATGAAAGCTGGCTTTATTCATTTCAAAACTGAGAAATATGA..................................................................................................TACAAAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0236E02-u8qcS/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E470764" ref_strand="+" ref_description="SGN-E470764 [cSTB-20-O6]">
      <seq>attactagtgagtaacaaagtagtataaagggcaagcaaaagccaaaggaagctcattgagaaatgtcaactgcttccattaacaattgccttactatctcccctgctcaagcttcccttaagaaacctactcgtcccgttgccttcgcaaggcttggcaactcttcttcttcttcttctattccaagtctcatcagaaacgagcccgtcttcgctgcccctactcccatcatcaaccccattgtgagagaagaaatggcaaaagaatcctacgatcaggccattgctgcactcgagaaactcctcagtgagaaagcagaacttggaccagttgctgcagcaagagttgaccagattactgctgaattgaaatcagcagatggcagcaaggccttcgaccctgttgagcacatgaaagctggctttattcatttcaaaactgagaaatatgatacaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0236E02-u8qcS/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0236E02.1" temp_strand="+" temp_description="C02HBa0236E02.1  AC215430.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0236E02 sequenced_by:kribb upload_account_name:korea">
        <position start="14637" stop="17260"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="14937" g_stop="15182" g_length="246"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="246" r_length="246" r_score="0.984"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="15183" i_stop="16379" i_length="1197">
            <donor d_prob="1.000" d_score="0.98"/>
            <acceptor a_prob="0.971" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="16380" g_stop="16441" g_length="62"/>
          <reference_exon_boundary r_type="cDNA" r_start="247" r_stop="308" r_length="62" r_score="0.984"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="16442" i_stop="16813" i_length="372">
            <donor d_prob="0.999" d_score="0.98"/>
            <acceptor a_prob="1.000" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="16814" g_stop="16957" g_length="144"/>
          <reference_exon_boundary r_type="cDNA" r_start="309" r_stop="452" r_length="144" r_score="0.958"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="16958" i_stop="17055" i_length="98">
            <donor d_prob="0.999" d_score="0.98"/>
            <acceptor a_prob="0.999" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="17056" g_stop="17061" g_length="6"/>
          <reference_exon_boundary r_type="cDNA" r_start="453" r_stop="458" r_length="6" r_score="0.833"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0236E02.1" gen_strand="+" ref_id="SGN-E470764" ref_strand="+">
        <total_alignment_score>0.976</total_alignment_score>
        <cumulative_length_of_scored_exons>458</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0236E02.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E470764" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="14937" e_stop="15182"/>
          <exon e_start="16380" e_stop="16441"/>
          <exon e_start="16814" e_stop="16957"/>
          <exon e_start="17056" e_stop="17061"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATTACTAGTTAGTAACAAAGTAGTATAAAGGGCAAGCAAAAGCTAAAGGAAGCTCATTGAGAAATGTCAACTGCTTCCATTAACAATTGCCTTACTCTCTCCCCTGCTCAAGCTTCCCTTAAGAAACCTACTCGTCCCGTTGCCTTCGCAAGGCTTGGCAACTCTTCTTCTTCTTCTTCTATTCCAAGTCTCATCAGAAACGAGCCCGTCTTTGCTGCCCCTACTCCCATCATCAACCCCATTGTGGTACGAATTTTTAACTTACATCACTGTATTTTAATCTGTTATAACAAGTTATTTATATTTGACGTTACTTAATTTATTTTTTAAGCAAGACATTTTTTTTGTCTTATCGTATTTTTTGTAACGACTTGTGTCCATGCATGCTAGTTCACGTGAAAATTCAATATTGGCATAGTTCTAAACTTTAGTTTCTAACCACCTTTATTATTGGTATTGTTATTTTTGGCCATGAATCTCCTGAAGTTAGGTGAATTGATCATGTCGCTCTAAATTGTACACGTCTATTGCGTGTACTCAATGACATATAATATATTATTGCAATCCTAAAATAAGTGTTATTTTAATTTATTTTGAACTCATTAAAATAAATATGATATTTTACTGAGTTACTTATATTTATTACTTTGATTTTTTTGAGTACTAATTTGTATTTTGAAACTTTTAAGATGACGAGAGGGTGGAAATAACAAATTAAATTTGAAAATGAACCAAAATAGAGGTGGCAATTAGGTAGAGGTTCTCGCAAAATGAATATTAAATATGTAGGGCCGTATTGTGAATTATGTGGATAATGTTTTTGCTTTCTATTTTTTTTTAAAAAAAATAATTATTACTTACAATAATCCAACGGGTATCCTCGTATGTGCCCATCCTACAAGTGATAAAATGATAAGTACCAGTCTACCATCAAGTTTGTAGGATAGAAACTATTTAGTATACATTGTTTTTGTCTTAATTTCTAGTTTTGGTATCCATCTAAATCGATACTCCATTATGTTAATTATTTCATTTCTTTCTTTTGACATCTACATCACTTTTTAATGTGGTTACCACTTGCTATAATCATACTTCACTTAGCATTTTATTTGAACTTAGTGAAAGTGAAATTTTTCCTAATAATTGGTCTAAAAATTGAAGAAGATTAAAGCCAAGAAATTGAGTTCTTCCTTCTTTCTTCCAACTTTGAAAGTACCGATAGATACTATCATATAAAAAGAAGAGGTGGTCTGACTAACTCAATGAAGTGAATTTTTCAAAAACATGCTCAGAAAAATGAGAAAAATGGAGTTTTTGAAAAGAAAAATTAACAGATATTTAAAGATAAATTTTTGAAATTTGGTTCAAAATTTATGGTCAAATATTAACTTATATTTATATATATACCTCTTCTAAAATGCTAATGAGAATTAGAATTTGCAGAGAGAAGAAATGGCAAAAGAATCCTACGATCAAGCCATTGCTGCACTCGAGAAACTCCTCAGGTTTGTACTCTCTCTACGACTCTACCTTCTAAATCACACTACTTTTTTCTCGATCAAGTGGGGCCCAAAAAATATACATACACCCACACATACGTAGACAAAAAAAATGTTAAAATTTGCGAATATGCAGAGAAAACATAATATAATCATGCAATGTTTACTCGTAAAATTCAATTTCCCGGCAATGAACATGTTACTTGGTTTCGAGTTCTCCAGATCTGCATTAATTTTACCATTCTATCATCATTTTTTTACCCCATATCTGCATTAATTTATCATGGTAATGGTGCTCAAACCACAAATCTTTTTTTTTTCTACCTGAAATATTGCTTCAATAATAATAATGGTCTAAATTATTTTCTGCAATTACAGCGAGAAAGCAGAACTTGGACCAGTTGCTGCAGCAAGAGTTGACCAGATCACTGCTGAATTGAAATCAGCAGACGGCGGCAAGGCATTCGACCCTGTTGAGCACATGAAAGCTGGCTTTATTCATTTCAAGACTGAGAAATATGAGTAAGCAAATTCATTCAAATTAAAATTTCTGCATATTTGATGTTGTAACATTATTAGTGTCTGATAATTTTTCCTGTTTTCTATTTATGTACCAACAGCACAAA</genome_strand>
        <mrna_strand>ATTACTAGTGAGTAACAAAGTAGTATAAAGGGCAAGCAAAAGCCAAAGGAAGCTCATTGAGAAATGTCAACTGCTTCCATTAACAATTGCCTTACTATCTCCCCTGCTCAAGCTTCCCTTAAGAAACCTACTCGTCCCGTTGCCTTCGCAAGGCTTGGCAACTCTTCTTCTTCTTCTTCTATTCCAAGTCTCATCAGAAACGAGCCCGTCTTCGCTGCCCCTACTCCCATCATCAACCCCATTGTG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGAGAAGAAATGGCAAAAGAATCCTACGATCAGGCCATTGCTGCACTCGAGAAACTCCTCAG....................................................................................................................................................................................................................................................................................................................................................................................TGAGAAAGCAGAACTTGGACCAGTTGCTGCAGCAAGAGTTGACCAGATTACTGCTGAATTGAAATCAGCAGATGGCAGCAAGGCCTTCGACCCTGTTGAGCACATGAAAGCTGGCTTTATTCATTTCAAAACTGAGAAATATGA..................................................................................................TACAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0236E02-u8qcS/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E472572" ref_strand="+" ref_description="SGN-E472572 [cSTB-29-A2]">
      <seq>attactagtgagtaacaaagtagtataaagggcaagcaaaagctaaaggaagctcattgagaaatgtcaactgcttccattaacaattgccttactatctcccctgctcaagcttcccttaagaaacctactcgtcccgttgccttcgcaaggcttggcaactcttcttcttcttctattccaagtctcatcagaaacgagcccgtcttcgctgcccctactcccatcatcaaccccat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0236E02-u8qcS/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0236E02.1" temp_strand="+" temp_description="C02HBa0236E02.1  AC215430.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0236E02 sequenced_by:kribb upload_account_name:korea">
        <position start="14637" stop="15478"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="14937" g_stop="15178" g_length="242"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="239" r_length="239" r_score="0.975"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0236E02.1" gen_strand="+" ref_id="SGN-E472572" ref_strand="+">
        <total_alignment_score>0.975</total_alignment_score>
        <cumulative_length_of_scored_exons>242</cumulative_length_of_scored_exons>
        <coverage percentage="1.013" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0236E02.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E472572" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="14937" e_stop="15178"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATTACTAGTTAGTAACAAAGTAGTATAAAGGGCAAGCAAAAGCTAAAGGAAGCTCATTGAGAAATGTCAACTGCTTCCATTAACAATTGCCTTACTCTCTCCCCTGCTCAAGCTTCCCTTAAGAAACCTACTCGTCCCGTTGCCTTCGCAAGGCTTGGCAACTCTTCTTCTTCTTCTTCTATTCCAAGTCTCATCAGAAACGAGCCCGTCTTTGCTGCCCCTACTCCCATCATCAACCCCAT</genome_strand>
        <mrna_strand>ATTACTAGTGAGTAACAAAGTAGTATAAAGGGCAAGCAAAAGCTAAAGGAAGCTCATTGAGAAATGTCAACTGCTTCCATTAACAATTGCCTTACTATCTCCCCTGCTCAAGCTTCCCTTAAGAAACCTACTCGTCCCGTTGCCTTCGCAAGGCTTGGCAA--C-TCTTCTTCTTCTTCTATTCCAAGTCTCATCAGAAACGAGCCCGTCTTCGCTGCCCCTACTCCCATCATCAACCCCAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0236E02-u8qcS/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E345097" ref_strand="+" ref_description="SGN-E345097 [cTOF-22-O16]">
      <seq>attactagttagtaacaaagtagtataaagggcaagcaaaagctaaaggaagctcattgagaaatgtcaactgcttccattaacaattgccttactctctcccctgctcaagcttcccttaagaaacctactcgtcccgttgccttcgcagggctggggcactctcttcttcttcttct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0236E02-u8qcS/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0236E02.1" temp_strand="+" temp_description="C02HBa0236E02.1  AC215430.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0236E02 sequenced_by:kribb upload_account_name:korea">
        <position start="14637" stop="15416"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="14937" g_stop="15116" g_length="180"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="179" r_length="179" r_score="0.972"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0236E02.1" gen_strand="+" ref_id="SGN-E345097" ref_strand="+">
        <total_alignment_score>0.972</total_alignment_score>
        <cumulative_length_of_scored_exons>180</cumulative_length_of_scored_exons>
        <coverage percentage="1.006" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0236E02.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E345097" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="14937" e_stop="15116"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATTACTAGTTAGTAACAAAGTAGTATAAAGGGCAAGCAAAAGCTAAAGGAAGCTCATTGAGAAATGTCAACTGCTTCCATTAACAATTGCCTTACTCTCTCCCCTGCTCAAGCTTCCCTTAAGAAACCTACTCGTCCCGTTGCCTTCGCAAGGCTTGGCAACTCTTCTTCTTCTTCTTCT</genome_strand>
        <mrna_strand>ATTACTAGTTAGTAACAAAGTAGTATAAAGGGCAAGCAAAAGCTAAAGGAAGCTCATTGAGAAATGTCAACTGCTTCCATTAACAATTGCCTTACTCTCTCCCCTGCTCAAGCTTCCCTTAAGAAACCTACTCGTCCCGTTGCCTTCGCAGGGCTGGGGCACTC-TCTTCTTCTTCTTCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0236E02-u8qcS/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E286966" ref_strand="+" ref_description="SGN-E286966 [cLES-6-C2]">
      <seq>ttactagttagtaacaaagtagtataaagggcaagcaaaagctaaaggaagctcattgagaaatgtcaactgcttccattaacaattgccttactctctcccctgctcaagcttcccttaagaaacctactcgtcccgttgccttcgcaaggcttggcaactcttcttcttcttcttctattccaagtctcatcagaaacgagcccgtctttgctgcccctactcccatcatcaaccccattgtgagagaagaaatggcaaaagaatcctacgatcaagccattgctgcactcgagaaactcctcagcgagaaagcagaacttggaccagttgctgcagcaagagttgaccagatcactgctgaattgaaatcagcagacggcggcaaggcattcgaccctgttgagcacatgaaagctggctttattcatttcaagactgagaaatatgacacaaacccagccttatatggtgagctagcaaagggccagagccctaagttcatggttttcgcgtgctctgactcacgagtctgcccatcccatgtcctcaacttccaacctggtgaggcattcatggttcgtaacatcgccaacatggtccctgcttatgaca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0236E02-u8qcS/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0236E02.1" temp_strand="+" temp_description="C02HBa0236E02.1  AC215430.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0236E02 sequenced_by:kribb upload_account_name:korea">
        <position start="14638" stop="17603"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="14938" g_stop="15182" g_length="245"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="245" r_length="245" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="15183" i_stop="16379" i_length="1197">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.971" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="16380" g_stop="16441" g_length="62"/>
          <reference_exon_boundary r_type="cDNA" r_start="246" r_stop="307" r_length="62" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="16442" i_stop="16813" i_length="372">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="16814" g_stop="16957" g_length="144"/>
          <reference_exon_boundary r_type="cDNA" r_start="308" r_stop="451" r_length="144" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="16958" i_stop="17055" i_length="98">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="17056" g_stop="17104" g_length="49"/>
          <reference_exon_boundary r_type="cDNA" r_start="452" r_stop="500" r_length="49" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="17105" i_stop="17188" i_length="84">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.961" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="17189" g_stop="17303" g_length="115"/>
          <reference_exon_boundary r_type="cDNA" r_start="501" r_stop="615" r_length="115" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0236E02.1" gen_strand="+" ref_id="SGN-E286966" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>615</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0236E02.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E286966" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="14938" e_stop="15182"/>
          <exon e_start="16380" e_stop="16441"/>
          <exon e_start="16814" e_stop="16957"/>
          <exon e_start="17056" e_stop="17104"/>
          <exon e_start="17189" e_stop="17303"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTACTAGTTAGTAACAAAGTAGTATAAAGGGCAAGCAAAAGCTAAAGGAAGCTCATTGAGAAATGTCAACTGCTTCCATTAACAATTGCCTTACTCTCTCCCCTGCTCAAGCTTCCCTTAAGAAACCTACTCGTCCCGTTGCCTTCGCAAGGCTTGGCAACTCTTCTTCTTCTTCTTCTATTCCAAGTCTCATCAGAAACGAGCCCGTCTTTGCTGCCCCTACTCCCATCATCAACCCCATTGTGGTACGAATTTTTAACTTACATCACTGTATTTTAATCTGTTATAACAAGTTATTTATATTTGACGTTACTTAATTTATTTTTTAAGCAAGACATTTTTTTTGTCTTATCGTATTTTTTGTAACGACTTGTGTCCATGCATGCTAGTTCACGTGAAAATTCAATATTGGCATAGTTCTAAACTTTAGTTTCTAACCACCTTTATTATTGGTATTGTTATTTTTGGCCATGAATCTCCTGAAGTTAGGTGAATTGATCATGTCGCTCTAAATTGTACACGTCTATTGCGTGTACTCAATGACATATAATATATTATTGCAATCCTAAAATAAGTGTTATTTTAATTTATTTTGAACTCATTAAAATAAATATGATATTTTACTGAGTTACTTATATTTATTACTTTGATTTTTTTGAGTACTAATTTGTATTTTGAAACTTTTAAGATGACGAGAGGGTGGAAATAACAAATTAAATTTGAAAATGAACCAAAATAGAGGTGGCAATTAGGTAGAGGTTCTCGCAAAATGAATATTAAATATGTAGGGCCGTATTGTGAATTATGTGGATAATGTTTTTGCTTTCTATTTTTTTTTAAAAAAAATAATTATTACTTACAATAATCCAACGGGTATCCTCGTATGTGCCCATCCTACAAGTGATAAAATGATAAGTACCAGTCTACCATCAAGTTTGTAGGATAGAAACTATTTAGTATACATTGTTTTTGTCTTAATTTCTAGTTTTGGTATCCATCTAAATCGATACTCCATTATGTTAATTATTTCATTTCTTTCTTTTGACATCTACATCACTTTTTAATGTGGTTACCACTTGCTATAATCATACTTCACTTAGCATTTTATTTGAACTTAGTGAAAGTGAAATTTTTCCTAATAATTGGTCTAAAAATTGAAGAAGATTAAAGCCAAGAAATTGAGTTCTTCCTTCTTTCTTCCAACTTTGAAAGTACCGATAGATACTATCATATAAAAAGAAGAGGTGGTCTGACTAACTCAATGAAGTGAATTTTTCAAAAACATGCTCAGAAAAATGAGAAAAATGGAGTTTTTGAAAAGAAAAATTAACAGATATTTAAAGATAAATTTTTGAAATTTGGTTCAAAATTTATGGTCAAATATTAACTTATATTTATATATATACCTCTTCTAAAATGCTAATGAGAATTAGAATTTGCAGAGAGAAGAAATGGCAAAAGAATCCTACGATCAAGCCATTGCTGCACTCGAGAAACTCCTCAGGTTTGTACTCTCTCTACGACTCTACCTTCTAAATCACACTACTTTTTTCTCGATCAAGTGGGGCCCAAAAAATATACATACACCCACACATACGTAGACAAAAAAAATGTTAAAATTTGCGAATATGCAGAGAAAACATAATATAATCATGCAATGTTTACTCGTAAAATTCAATTTCCCGGCAATGAACATGTTACTTGGTTTCGAGTTCTCCAGATCTGCATTAATTTTACCATTCTATCATCATTTTTTTACCCCATATCTGCATTAATTTATCATGGTAATGGTGCTCAAACCACAAATCTTTTTTTTTTCTACCTGAAATATTGCTTCAATAATAATAATGGTCTAAATTATTTTCTGCAATTACAGCGAGAAAGCAGAACTTGGACCAGTTGCTGCAGCAAGAGTTGACCAGATCACTGCTGAATTGAAATCAGCAGACGGCGGCAAGGCATTCGACCCTGTTGAGCACATGAAAGCTGGCTTTATTCATTTCAAGACTGAGAAATATGAGTAAGCAAATTCATTCAAATTAAAATTTCTGCATATTTGATGTTGTAACATTATTAGTGTCTGATAATTTTTCCTGTTTTCTATTTATGTACCAACAGCACAAACCCAGCCTTATATGGTGAGCTAGCAAAGGGCCAGAGCCCTAAGGTACAAATTCCTTGTTAATTTGTTGTCTAATTTTATGATTTGTACGGTTTCTGATGAGTTCTATTGTCCTAAATGTGTAAACAGTTCATGGTTTTCGCGTGCTCTGACTCACGAGTCTGCCCATCCCATGTCCTCAACTTCCAACCTGGTGAGGCATTCATGGTTCGTAACATCGCCAACATGGTCCCTGCTTATGACA</genome_strand>
        <mrna_strand>TTACTAGTTAGTAACAAAGTAGTATAAAGGGCAAGCAAAAGCTAAAGGAAGCTCATTGAGAAATGTCAACTGCTTCCATTAACAATTGCCTTACTCTCTCCCCTGCTCAAGCTTCCCTTAAGAAACCTACTCGTCCCGTTGCCTTCGCAAGGCTTGGCAACTCTTCTTCTTCTTCTTCTATTCCAAGTCTCATCAGAAACGAGCCCGTCTTTGCTGCCCCTACTCCCATCATCAACCCCATTGTG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGAGAAGAAATGGCAAAAGAATCCTACGATCAAGCCATTGCTGCACTCGAGAAACTCCTCAG....................................................................................................................................................................................................................................................................................................................................................................................CGAGAAAGCAGAACTTGGACCAGTTGCTGCAGCAAGAGTTGACCAGATCACTGCTGAATTGAAATCAGCAGACGGCGGCAAGGCATTCGACCCTGTTGAGCACATGAAAGCTGGCTTTATTCATTTCAAGACTGAGAAATATGA..................................................................................................CACAAACCCAGCCTTATATGGTGAGCTAGCAAAGGGCCAGAGCCCTAAG....................................................................................TTCATGGTTTTCGCGTGCTCTGACTCACGAGTCTGCCCATCCCATGTCCTCAACTTCCAACCTGGTGAGGCATTCATGGTTCGTAACATCGCCAACATGGTCCCTGCTTATGACA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0236E02-u8qcS/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E321004" ref_strand="+" ref_description="SGN-E321004 [cTOB-13-H21]">
      <seq>ttactagttagtaacaaagtagtataaagggcaagcaaaagctaaaggaagctcattgagaaatgtcaactgcttccattaacaattgccttactctctcccctgctcaagcttcccttaagaaacctactcgtcccgttgccttcgcaaggcttggcaactcttcttcttcttcttctattccaagtctcatcagaaacgagcccgtctttgctgcccctactcccatcatcaaccccattgtgagagaagaaatggcaaaagaatcctacgatcaagccattgctgcactcgagaaactcctcagcgagaaagcagaacttggaccagttgctgcagcaagagttgaccagatcactgctgaattgaaatcagcagacggcggcaaggcattcgaccctgttgagcacatgaaagctggctttattcatttcaagactgagaaatatgacacaaacccagccttatatggtgagctagcaaagggccagagccctaagttcatggttttcgcgtgctctgactca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0236E02-u8qcS/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0236E02.1" temp_strand="+" temp_description="C02HBa0236E02.1  AC215430.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0236E02 sequenced_by:kribb upload_account_name:korea">
        <position start="14638" stop="17515"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="14938" g_stop="15182" g_length="245"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="245" r_length="245" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="15183" i_stop="16379" i_length="1197">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.971" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="16380" g_stop="16441" g_length="62"/>
          <reference_exon_boundary r_type="cDNA" r_start="246" r_stop="307" r_length="62" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="16442" i_stop="16813" i_length="372">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="16814" g_stop="16957" g_length="144"/>
          <reference_exon_boundary r_type="cDNA" r_start="308" r_stop="451" r_length="144" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="16958" i_stop="17055" i_length="98">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="17056" g_stop="17104" g_length="49"/>
          <reference_exon_boundary r_type="cDNA" r_start="452" r_stop="500" r_length="49" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="17105" i_stop="17188" i_length="84">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.961" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="17189" g_stop="17215" g_length="27"/>
          <reference_exon_boundary r_type="cDNA" r_start="501" r_stop="527" r_length="27" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0236E02.1" gen_strand="+" ref_id="SGN-E321004" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>527</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0236E02.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E321004" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="14938" e_stop="15182"/>
          <exon e_start="16380" e_stop="16441"/>
          <exon e_start="16814" e_stop="16957"/>
          <exon e_start="17056" e_stop="17104"/>
          <exon e_start="17189" e_stop="17215"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTACTAGTTAGTAACAAAGTAGTATAAAGGGCAAGCAAAAGCTAAAGGAAGCTCATTGAGAAATGTCAACTGCTTCCATTAACAATTGCCTTACTCTCTCCCCTGCTCAAGCTTCCCTTAAGAAACCTACTCGTCCCGTTGCCTTCGCAAGGCTTGGCAACTCTTCTTCTTCTTCTTCTATTCCAAGTCTCATCAGAAACGAGCCCGTCTTTGCTGCCCCTACTCCCATCATCAACCCCATTGTGGTACGAATTTTTAACTTACATCACTGTATTTTAATCTGTTATAACAAGTTATTTATATTTGACGTTACTTAATTTATTTTTTAAGCAAGACATTTTTTTTGTCTTATCGTATTTTTTGTAACGACTTGTGTCCATGCATGCTAGTTCACGTGAAAATTCAATATTGGCATAGTTCTAAACTTTAGTTTCTAACCACCTTTATTATTGGTATTGTTATTTTTGGCCATGAATCTCCTGAAGTTAGGTGAATTGATCATGTCGCTCTAAATTGTACACGTCTATTGCGTGTACTCAATGACATATAATATATTATTGCAATCCTAAAATAAGTGTTATTTTAATTTATTTTGAACTCATTAAAATAAATATGATATTTTACTGAGTTACTTATATTTATTACTTTGATTTTTTTGAGTACTAATTTGTATTTTGAAACTTTTAAGATGACGAGAGGGTGGAAATAACAAATTAAATTTGAAAATGAACCAAAATAGAGGTGGCAATTAGGTAGAGGTTCTCGCAAAATGAATATTAAATATGTAGGGCCGTATTGTGAATTATGTGGATAATGTTTTTGCTTTCTATTTTTTTTTAAAAAAAATAATTATTACTTACAATAATCCAACGGGTATCCTCGTATGTGCCCATCCTACAAGTGATAAAATGATAAGTACCAGTCTACCATCAAGTTTGTAGGATAGAAACTATTTAGTATACATTGTTTTTGTCTTAATTTCTAGTTTTGGTATCCATCTAAATCGATACTCCATTATGTTAATTATTTCATTTCTTTCTTTTGACATCTACATCACTTTTTAATGTGGTTACCACTTGCTATAATCATACTTCACTTAGCATTTTATTTGAACTTAGTGAAAGTGAAATTTTTCCTAATAATTGGTCTAAAAATTGAAGAAGATTAAAGCCAAGAAATTGAGTTCTTCCTTCTTTCTTCCAACTTTGAAAGTACCGATAGATACTATCATATAAAAAGAAGAGGTGGTCTGACTAACTCAATGAAGTGAATTTTTCAAAAACATGCTCAGAAAAATGAGAAAAATGGAGTTTTTGAAAAGAAAAATTAACAGATATTTAAAGATAAATTTTTGAAATTTGGTTCAAAATTTATGGTCAAATATTAACTTATATTTATATATATACCTCTTCTAAAATGCTAATGAGAATTAGAATTTGCAGAGAGAAGAAATGGCAAAAGAATCCTACGATCAAGCCATTGCTGCACTCGAGAAACTCCTCAGGTTTGTACTCTCTCTACGACTCTACCTTCTAAATCACACTACTTTTTTCTCGATCAAGTGGGGCCCAAAAAATATACATACACCCACACATACGTAGACAAAAAAAATGTTAAAATTTGCGAATATGCAGAGAAAACATAATATAATCATGCAATGTTTACTCGTAAAATTCAATTTCCCGGCAATGAACATGTTACTTGGTTTCGAGTTCTCCAGATCTGCATTAATTTTACCATTCTATCATCATTTTTTTACCCCATATCTGCATTAATTTATCATGGTAATGGTGCTCAAACCACAAATCTTTTTTTTTTCTACCTGAAATATTGCTTCAATAATAATAATGGTCTAAATTATTTTCTGCAATTACAGCGAGAAAGCAGAACTTGGACCAGTTGCTGCAGCAAGAGTTGACCAGATCACTGCTGAATTGAAATCAGCAGACGGCGGCAAGGCATTCGACCCTGTTGAGCACATGAAAGCTGGCTTTATTCATTTCAAGACTGAGAAATATGAGTAAGCAAATTCATTCAAATTAAAATTTCTGCATATTTGATGTTGTAACATTATTAGTGTCTGATAATTTTTCCTGTTTTCTATTTATGTACCAACAGCACAAACCCAGCCTTATATGGTGAGCTAGCAAAGGGCCAGAGCCCTAAGGTACAAATTCCTTGTTAATTTGTTGTCTAATTTTATGATTTGTACGGTTTCTGATGAGTTCTATTGTCCTAAATGTGTAAACAGTTCATGGTTTTCGCGTGCTCTGACTCA</genome_strand>
        <mrna_strand>TTACTAGTTAGTAACAAAGTAGTATAAAGGGCAAGCAAAAGCTAAAGGAAGCTCATTGAGAAATGTCAACTGCTTCCATTAACAATTGCCTTACTCTCTCCCCTGCTCAAGCTTCCCTTAAGAAACCTACTCGTCCCGTTGCCTTCGCAAGGCTTGGCAACTCTTCTTCTTCTTCTTCTATTCCAAGTCTCATCAGAAACGAGCCCGTCTTTGCTGCCCCTACTCCCATCATCAACCCCATTGTG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGAGAAGAAATGGCAAAAGAATCCTACGATCAAGCCATTGCTGCACTCGAGAAACTCCTCAG....................................................................................................................................................................................................................................................................................................................................................................................CGAGAAAGCAGAACTTGGACCAGTTGCTGCAGCAAGAGTTGACCAGATCACTGCTGAATTGAAATCAGCAGACGGCGGCAAGGCATTCGACCCTGTTGAGCACATGAAAGCTGGCTTTATTCATTTCAAGACTGAGAAATATGA..................................................................................................CACAAACCCAGCCTTATATGGTGAGCTAGCAAAGGGCCAGAGCCCTAAG....................................................................................TTCATGGTTTTCGCGTGCTCTGACTCA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0236E02-u8qcS/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E277760" ref_strand="-" ref_description="SGN-E277760 [cLEL-5-H13](-)">
      <seq>gcacgaggttagtaacaaagtagtataaagggcaagcaaaagctaaaggaagctcattgagaaatgtcaactgcttccattaacaattgccttactctctcccctgctcaagcttcccttaagaaacctactcgtcccgttgccttcgcaaggcttggcaactcttcttcttcttcttctattccaagtctcatcagaaacgagcccgtctttgctgcccctactcccatcatcaaccccattgtgagagaagaaatggcaaaagaatcctacgatcaagccattgctgcactcgagaaactcctcagcgagaaagcagaacttggaccagttgctgcagcaagagttgaccagatcactgctgaattgaaatcagcagacggcggcaaggcattcgaccctgttgagcacatgaaagctggc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0236E02-u8qcS/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0236E02.1" temp_strand="+" temp_description="C02HBa0236E02.1  AC215430.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0236E02 sequenced_by:kribb upload_account_name:korea">
        <position start="14640" stop="17228"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="14938" g_stop="15182" g_length="245"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="246" r_length="246" r_score="0.980"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="15183" i_stop="16379" i_length="1197">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.971" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="16380" g_stop="16441" g_length="62"/>
          <reference_exon_boundary r_type="cDNA" r_start="247" r_stop="308" r_length="62" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="16442" i_stop="16813" i_length="372">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="16814" g_stop="16928" g_length="115"/>
          <reference_exon_boundary r_type="cDNA" r_start="309" r_stop="423" r_length="115" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0236E02.1" gen_strand="+" ref_id="SGN-E277760" ref_strand="-">
        <total_alignment_score>0.988</total_alignment_score>
        <cumulative_length_of_scored_exons>422</cumulative_length_of_scored_exons>
        <coverage percentage="0.998" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0236E02.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E277760" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="14938" e_stop="15182"/>
          <exon e_start="16380" e_stop="16441"/>
          <exon e_start="16814" e_stop="16928"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTACTA-GTTAGTAACAAAGTAGTATAAAGGGCAAGCAAAAGCTAAAGGAAGCTCATTGAGAAATGTCAACTGCTTCCATTAACAATTGCCTTACTCTCTCCCCTGCTCAAGCTTCCCTTAAGAAACCTACTCGTCCCGTTGCCTTCGCAAGGCTTGGCAACTCTTCTTCTTCTTCTTCTATTCCAAGTCTCATCAGAAACGAGCCCGTCTTTGCTGCCCCTACTCCCATCATCAACCCCATTGTGGTACGAATTTTTAACTTACATCACTGTATTTTAATCTGTTATAACAAGTTATTTATATTTGACGTTACTTAATTTATTTTTTAAGCAAGACATTTTTTTTGTCTTATCGTATTTTTTGTAACGACTTGTGTCCATGCATGCTAGTTCACGTGAAAATTCAATATTGGCATAGTTCTAAACTTTAGTTTCTAACCACCTTTATTATTGGTATTGTTATTTTTGGCCATGAATCTCCTGAAGTTAGGTGAATTGATCATGTCGCTCTAAATTGTACACGTCTATTGCGTGTACTCAATGACATATAATATATTATTGCAATCCTAAAATAAGTGTTATTTTAATTTATTTTGAACTCATTAAAATAAATATGATATTTTACTGAGTTACTTATATTTATTACTTTGATTTTTTTGAGTACTAATTTGTATTTTGAAACTTTTAAGATGACGAGAGGGTGGAAATAACAAATTAAATTTGAAAATGAACCAAAATAGAGGTGGCAATTAGGTAGAGGTTCTCGCAAAATGAATATTAAATATGTAGGGCCGTATTGTGAATTATGTGGATAATGTTTTTGCTTTCTATTTTTTTTTAAAAAAAATAATTATTACTTACAATAATCCAACGGGTATCCTCGTATGTGCCCATCCTACAAGTGATAAAATGATAAGTACCAGTCTACCATCAAGTTTGTAGGATAGAAACTATTTAGTATACATTGTTTTTGTCTTAATTTCTAGTTTTGGTATCCATCTAAATCGATACTCCATTATGTTAATTATTTCATTTCTTTCTTTTGACATCTACATCACTTTTTAATGTGGTTACCACTTGCTATAATCATACTTCACTTAGCATTTTATTTGAACTTAGTGAAAGTGAAATTTTTCCTAATAATTGGTCTAAAAATTGAAGAAGATTAAAGCCAAGAAATTGAGTTCTTCCTTCTTTCTTCCAACTTTGAAAGTACCGATAGATACTATCATATAAAAAGAAGAGGTGGTCTGACTAACTCAATGAAGTGAATTTTTCAAAAACATGCTCAGAAAAATGAGAAAAATGGAGTTTTTGAAAAGAAAAATTAACAGATATTTAAAGATAAATTTTTGAAATTTGGTTCAAAATTTATGGTCAAATATTAACTTATATTTATATATATACCTCTTCTAAAATGCTAATGAGAATTAGAATTTGCAGAGAGAAGAAATGGCAAAAGAATCCTACGATCAAGCCATTGCTGCACTCGAGAAACTCCTCAGGTTTGTACTCTCTCTACGACTCTACCTTCTAAATCACACTACTTTTTTCTCGATCAAGTGGGGCCCAAAAAATATACATACACCCACACATACGTAGACAAAAAAAATGTTAAAATTTGCGAATATGCAGAGAAAACATAATATAATCATGCAATGTTTACTCGTAAAATTCAATTTCCCGGCAATGAACATGTTACTTGGTTTCGAGTTCTCCAGATCTGCATTAATTTTACCATTCTATCATCATTTTTTTACCCCATATCTGCATTAATTTATCATGGTAATGGTGCTCAAACCACAAATCTTTTTTTTTTCTACCTGAAATATTGCTTCAATAATAATAATGGTCTAAATTATTTTCTGCAATTACAGCGAGAAAGCAGAACTTGGACCAGTTGCTGCAGCAAGAGTTGACCAGATCACTGCTGAATTGAAATCAGCAGACGGCGGCAAGGCATTCGACCCTGTTGAGCACATGAAAGCTGGC</genome_strand>
        <mrna_strand>GCACGAGGTTAGTAACAAAGTAGTATAAAGGGCAAGCAAAAGCTAAAGGAAGCTCATTGAGAAATGTCAACTGCTTCCATTAACAATTGCCTTACTCTCTCCCCTGCTCAAGCTTCCCTTAAGAAACCTACTCGTCCCGTTGCCTTCGCAAGGCTTGGCAACTCTTCTTCTTCTTCTTCTATTCCAAGTCTCATCAGAAACGAGCCCGTCTTTGCTGCCCCTACTCCCATCATCAACCCCATTGTG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGAGAAGAAATGGCAAAAGAATCCTACGATCAAGCCATTGCTGCACTCGAGAAACTCCTCAG....................................................................................................................................................................................................................................................................................................................................................................................CGAGAAAGCAGAACTTGGACCAGTTGCTGCAGCAAGAGTTGACCAGATCACTGCTGAATTGAAATCAGCAGACGGCGGCAAGGCATTCGACCCTGTTGAGCACATGAAAGCTGGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0236E02-u8qcS/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E202739" ref_strand="+" ref_description="SGN-E202739 [cLEB-1-E10]">
      <seq>gcacgagtagtaacaaagtagtataaagggcaagcaaaagctaaaggaagctcattgagaaatgtcaactgcttccattaacaattgccttactctctcccctgctcaagcttcccttaagaaacctactcgtcccgttgccttcgcaaggcttggcaactcttcttcttcttcttctattccaagtctcatcagaaacgagcccgtctttgctgcccctactcccatcatcaaccccattgtgagagaagaaatggcaaaagaatcctacgatcaagccattgctgcactcgagaaactcctcagcgagaaagcagaacttggaccagttgctgcagcaagagttgaccagatcactgctgaattgaaatcagcagacggcggcaaggcattcgaccctgttga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0236E02-u8qcS/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0236E02.1" temp_strand="+" temp_description="C02HBa0236E02.1  AC215430.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0236E02 sequenced_by:kribb upload_account_name:korea">
        <position start="14640" stop="17212"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="14938" g_stop="15182" g_length="245"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="244" r_length="244" r_score="0.984"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="15183" i_stop="16379" i_length="1197">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.971" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="16380" g_stop="16441" g_length="62"/>
          <reference_exon_boundary r_type="cDNA" r_start="245" r_stop="306" r_length="62" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="16442" i_stop="16813" i_length="372">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="16814" g_stop="16912" g_length="99"/>
          <reference_exon_boundary r_type="cDNA" r_start="307" r_stop="405" r_length="99" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0236E02.1" gen_strand="+" ref_id="SGN-E202739" ref_strand="+">
        <total_alignment_score>0.990</total_alignment_score>
        <cumulative_length_of_scored_exons>406</cumulative_length_of_scored_exons>
        <coverage percentage="1.002" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0236E02.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E202739" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="14938" e_stop="15182"/>
          <exon e_start="16380" e_stop="16441"/>
          <exon e_start="16814" e_stop="16912"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTACTAGTTAGTAACAAAGTAGTATAAAGGGCAAGCAAAAGCTAAAGGAAGCTCATTGAGAAATGTCAACTGCTTCCATTAACAATTGCCTTACTCTCTCCCCTGCTCAAGCTTCCCTTAAGAAACCTACTCGTCCCGTTGCCTTCGCAAGGCTTGGCAACTCTTCTTCTTCTTCTTCTATTCCAAGTCTCATCAGAAACGAGCCCGTCTTTGCTGCCCCTACTCCCATCATCAACCCCATTGTGGTACGAATTTTTAACTTACATCACTGTATTTTAATCTGTTATAACAAGTTATTTATATTTGACGTTACTTAATTTATTTTTTAAGCAAGACATTTTTTTTGTCTTATCGTATTTTTTGTAACGACTTGTGTCCATGCATGCTAGTTCACGTGAAAATTCAATATTGGCATAGTTCTAAACTTTAGTTTCTAACCACCTTTATTATTGGTATTGTTATTTTTGGCCATGAATCTCCTGAAGTTAGGTGAATTGATCATGTCGCTCTAAATTGTACACGTCTATTGCGTGTACTCAATGACATATAATATATTATTGCAATCCTAAAATAAGTGTTATTTTAATTTATTTTGAACTCATTAAAATAAATATGATATTTTACTGAGTTACTTATATTTATTACTTTGATTTTTTTGAGTACTAATTTGTATTTTGAAACTTTTAAGATGACGAGAGGGTGGAAATAACAAATTAAATTTGAAAATGAACCAAAATAGAGGTGGCAATTAGGTAGAGGTTCTCGCAAAATGAATATTAAATATGTAGGGCCGTATTGTGAATTATGTGGATAATGTTTTTGCTTTCTATTTTTTTTTAAAAAAAATAATTATTACTTACAATAATCCAACGGGTATCCTCGTATGTGCCCATCCTACAAGTGATAAAATGATAAGTACCAGTCTACCATCAAGTTTGTAGGATAGAAACTATTTAGTATACATTGTTTTTGTCTTAATTTCTAGTTTTGGTATCCATCTAAATCGATACTCCATTATGTTAATTATTTCATTTCTTTCTTTTGACATCTACATCACTTTTTAATGTGGTTACCACTTGCTATAATCATACTTCACTTAGCATTTTATTTGAACTTAGTGAAAGTGAAATTTTTCCTAATAATTGGTCTAAAAATTGAAGAAGATTAAAGCCAAGAAATTGAGTTCTTCCTTCTTTCTTCCAACTTTGAAAGTACCGATAGATACTATCATATAAAAAGAAGAGGTGGTCTGACTAACTCAATGAAGTGAATTTTTCAAAAACATGCTCAGAAAAATGAGAAAAATGGAGTTTTTGAAAAGAAAAATTAACAGATATTTAAAGATAAATTTTTGAAATTTGGTTCAAAATTTATGGTCAAATATTAACTTATATTTATATATATACCTCTTCTAAAATGCTAATGAGAATTAGAATTTGCAGAGAGAAGAAATGGCAAAAGAATCCTACGATCAAGCCATTGCTGCACTCGAGAAACTCCTCAGGTTTGTACTCTCTCTACGACTCTACCTTCTAAATCACACTACTTTTTTCTCGATCAAGTGGGGCCCAAAAAATATACATACACCCACACATACGTAGACAAAAAAAATGTTAAAATTTGCGAATATGCAGAGAAAACATAATATAATCATGCAATGTTTACTCGTAAAATTCAATTTCCCGGCAATGAACATGTTACTTGGTTTCGAGTTCTCCAGATCTGCATTAATTTTACCATTCTATCATCATTTTTTTACCCCATATCTGCATTAATTTATCATGGTAATGGTGCTCAAACCACAAATCTTTTTTTTTTCTACCTGAAATATTGCTTCAATAATAATAATGGTCTAAATTATTTTCTGCAATTACAGCGAGAAAGCAGAACTTGGACCAGTTGCTGCAGCAAGAGTTGACCAGATCACTGCTGAATTGAAATCAGCAGACGGCGGCAAGGCATTCGACCCTGTTGA</genome_strand>
        <mrna_strand>GCACGAGT-AGTAACAAAGTAGTATAAAGGGCAAGCAAAAGCTAAAGGAAGCTCATTGAGAAATGTCAACTGCTTCCATTAACAATTGCCTTACTCTCTCCCCTGCTCAAGCTTCCCTTAAGAAACCTACTCGTCCCGTTGCCTTCGCAAGGCTTGGCAACTCTTCTTCTTCTTCTTCTATTCCAAGTCTCATCAGAAACGAGCCCGTCTTTGCTGCCCCTACTCCCATCATCAACCCCATTGTG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGAGAAGAAATGGCAAAAGAATCCTACGATCAAGCCATTGCTGCACTCGAGAAACTCCTCAG....................................................................................................................................................................................................................................................................................................................................................................................CGAGAAAGCAGAACTTGGACCAGTTGCTGCAGCAAGAGTTGACCAGATCACTGCTGAATTGAAATCAGCAGACGGCGGCAAGGCATTCGACCCTGTTGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0236E02-u8qcS/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E281523" ref_strand="-" ref_description="SGN-E281523 [cLEL-1-H1](-)">
      <seq>gcacgagtagtaacaaagtagtataaagggcaagcaaaagctaaaggaagctcattgagaaatgtcaactgcttccattaacaattgccttactctctcccctgctcaagcttcccttaagaaacctactcgtcccgttgccttcgcaaggcttggcaactcttcttcttcttcttctattccaagtctcatcagaaacgagcccgtctttgctgcccctactcccatcatcaaccccattgtgagagaagaaatggcaaaagaatcctacgatcaagccattgctgcactcgagaaactccttaacgagaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0236E02-u8qcS/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0236E02.1" temp_strand="+" temp_description="C02HBa0236E02.1  AC215430.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0236E02 sequenced_by:kribb upload_account_name:korea">
        <position start="14640" stop="16740"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="14938" g_stop="15182" g_length="245"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="244" r_length="244" r_score="0.984"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="15183" i_stop="16379" i_length="1197">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.971" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="16380" g_stop="16441" g_length="62"/>
          <reference_exon_boundary r_type="cDNA" r_start="245" r_stop="306" r_length="62" r_score="0.968"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0236E02.1" gen_strand="+" ref_id="SGN-E281523" ref_strand="-">
        <total_alignment_score>0.980</total_alignment_score>
        <cumulative_length_of_scored_exons>307</cumulative_length_of_scored_exons>
        <coverage percentage="0.984" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0236E02.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E281523" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="14938" e_stop="15182"/>
          <exon e_start="16380" e_stop="16441"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTACTAGTTAGTAACAAAGTAGTATAAAGGGCAAGCAAAAGCTAAAGGAAGCTCATTGAGAAATGTCAACTGCTTCCATTAACAATTGCCTTACTCTCTCCCCTGCTCAAGCTTCCCTTAAGAAACCTACTCGTCCCGTTGCCTTCGCAAGGCTTGGCAACTCTTCTTCTTCTTCTTCTATTCCAAGTCTCATCAGAAACGAGCCCGTCTTTGCTGCCCCTACTCCCATCATCAACCCCATTGTGGTACGAATTTTTAACTTACATCACTGTATTTTAATCTGTTATAACAAGTTATTTATATTTGACGTTACTTAATTTATTTTTTAAGCAAGACATTTTTTTTGTCTTATCGTATTTTTTGTAACGACTTGTGTCCATGCATGCTAGTTCACGTGAAAATTCAATATTGGCATAGTTCTAAACTTTAGTTTCTAACCACCTTTATTATTGGTATTGTTATTTTTGGCCATGAATCTCCTGAAGTTAGGTGAATTGATCATGTCGCTCTAAATTGTACACGTCTATTGCGTGTACTCAATGACATATAATATATTATTGCAATCCTAAAATAAGTGTTATTTTAATTTATTTTGAACTCATTAAAATAAATATGATATTTTACTGAGTTACTTATATTTATTACTTTGATTTTTTTGAGTACTAATTTGTATTTTGAAACTTTTAAGATGACGAGAGGGTGGAAATAACAAATTAAATTTGAAAATGAACCAAAATAGAGGTGGCAATTAGGTAGAGGTTCTCGCAAAATGAATATTAAATATGTAGGGCCGTATTGTGAATTATGTGGATAATGTTTTTGCTTTCTATTTTTTTTTAAAAAAAATAATTATTACTTACAATAATCCAACGGGTATCCTCGTATGTGCCCATCCTACAAGTGATAAAATGATAAGTACCAGTCTACCATCAAGTTTGTAGGATAGAAACTATTTAGTATACATTGTTTTTGTCTTAATTTCTAGTTTTGGTATCCATCTAAATCGATACTCCATTATGTTAATTATTTCATTTCTTTCTTTTGACATCTACATCACTTTTTAATGTGGTTACCACTTGCTATAATCATACTTCACTTAGCATTTTATTTGAACTTAGTGAAAGTGAAATTTTTCCTAATAATTGGTCTAAAAATTGAAGAAGATTAAAGCCAAGAAATTGAGTTCTTCCTTCTTTCTTCCAACTTTGAAAGTACCGATAGATACTATCATATAAAAAGAAGAGGTGGTCTGACTAACTCAATGAAGTGAATTTTTCAAAAACATGCTCAGAAAAATGAGAAAAATGGAGTTTTTGAAAAGAAAAATTAACAGATATTTAAAGATAAATTTTTGAAATTTGGTTCAAAATTTATGGTCAAATATTAACTTATATTTATATATATACCTCTTCTAAAATGCTAATGAGAATTAGAATTTGCAGAGAGAAGAAATGGCAAAAGAATCCTACGATCAAGCCATTGCTGCACTCGAGAAACTCCTCAG</genome_strand>
        <mrna_strand>GCACGAGT-AGTAACAAAGTAGTATAAAGGGCAAGCAAAAGCTAAAGGAAGCTCATTGAGAAATGTCAACTGCTTCCATTAACAATTGCCTTACTCTCTCCCCTGCTCAAGCTTCCCTTAAGAAACCTACTCGTCCCGTTGCCTTCGCAAGGCTTGGCAACTCTTCTTCTTCTTCTTCTATTCCAAGTCTCATCAGAAACGAGCCCGTCTTTGCTGCCCCTACTCCCATCATCAACCCCATTGTG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGAGAAGAAATGGCAAAAGAATCCTACGATCAAGCCATTGCTGCACTCGAGAAACTCCTTAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0236E02-u8qcS/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E299136" ref_strand="+" ref_description="SGN-E299136 [cLET-42-J19]">
      <seq>tactatttagtaacatagtagtctaaagggcaagcaaaagctaaaggaagctcattgagaaatgtcaactgcttccattaacaattgccttactctctcccctgctcaagcttcccttaagaaacctactcgtcccgttgccttcgcaaggcttggcaactcttcttcttcttcttctattccaagtctcatcagaaacgagcccgtctttgctgcccctactcccatcatcaaccccattgtgagagaagaaatggcaaaagaatcctacgatcaagccattgctgcactcgagaaactcctcagcgagaaagcagaact</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0236E02-u8qcS/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0236E02.1" temp_strand="+" temp_description="C02HBa0236E02.1  AC215430.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0236E02 sequenced_by:kribb upload_account_name:korea">
        <position start="14639" stop="16741"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="14939" g_stop="15182" g_length="244"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="244" r_length="244" r_score="0.988"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="15183" i_stop="16379" i_length="1197">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.971" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="16380" g_stop="16441" g_length="62"/>
          <reference_exon_boundary r_type="cDNA" r_start="245" r_stop="306" r_length="62" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0236E02.1" gen_strand="+" ref_id="SGN-E299136" ref_strand="+">
        <total_alignment_score>0.990</total_alignment_score>
        <cumulative_length_of_scored_exons>306</cumulative_length_of_scored_exons>
        <coverage percentage="0.953" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0236E02.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E299136" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="14939" e_stop="15182"/>
          <exon e_start="16380" e_stop="16441"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TACTAGTTAGTAACAAAGTAGTATAAAGGGCAAGCAAAAGCTAAAGGAAGCTCATTGAGAAATGTCAACTGCTTCCATTAACAATTGCCTTACTCTCTCCCCTGCTCAAGCTTCCCTTAAGAAACCTACTCGTCCCGTTGCCTTCGCAAGGCTTGGCAACTCTTCTTCTTCTTCTTCTATTCCAAGTCTCATCAGAAACGAGCCCGTCTTTGCTGCCCCTACTCCCATCATCAACCCCATTGTGGTACGAATTTTTAACTTACATCACTGTATTTTAATCTGTTATAACAAGTTATTTATATTTGACGTTACTTAATTTATTTTTTAAGCAAGACATTTTTTTTGTCTTATCGTATTTTTTGTAACGACTTGTGTCCATGCATGCTAGTTCACGTGAAAATTCAATATTGGCATAGTTCTAAACTTTAGTTTCTAACCACCTTTATTATTGGTATTGTTATTTTTGGCCATGAATCTCCTGAAGTTAGGTGAATTGATCATGTCGCTCTAAATTGTACACGTCTATTGCGTGTACTCAATGACATATAATATATTATTGCAATCCTAAAATAAGTGTTATTTTAATTTATTTTGAACTCATTAAAATAAATATGATATTTTACTGAGTTACTTATATTTATTACTTTGATTTTTTTGAGTACTAATTTGTATTTTGAAACTTTTAAGATGACGAGAGGGTGGAAATAACAAATTAAATTTGAAAATGAACCAAAATAGAGGTGGCAATTAGGTAGAGGTTCTCGCAAAATGAATATTAAATATGTAGGGCCGTATTGTGAATTATGTGGATAATGTTTTTGCTTTCTATTTTTTTTTAAAAAAAATAATTATTACTTACAATAATCCAACGGGTATCCTCGTATGTGCCCATCCTACAAGTGATAAAATGATAAGTACCAGTCTACCATCAAGTTTGTAGGATAGAAACTATTTAGTATACATTGTTTTTGTCTTAATTTCTAGTTTTGGTATCCATCTAAATCGATACTCCATTATGTTAATTATTTCATTTCTTTCTTTTGACATCTACATCACTTTTTAATGTGGTTACCACTTGCTATAATCATACTTCACTTAGCATTTTATTTGAACTTAGTGAAAGTGAAATTTTTCCTAATAATTGGTCTAAAAATTGAAGAAGATTAAAGCCAAGAAATTGAGTTCTTCCTTCTTTCTTCCAACTTTGAAAGTACCGATAGATACTATCATATAAAAAGAAGAGGTGGTCTGACTAACTCAATGAAGTGAATTTTTCAAAAACATGCTCAGAAAAATGAGAAAAATGGAGTTTTTGAAAAGAAAAATTAACAGATATTTAAAGATAAATTTTTGAAATTTGGTTCAAAATTTATGGTCAAATATTAACTTATATTTATATATATACCTCTTCTAAAATGCTAATGAGAATTAGAATTTGCAGAGAGAAGAAATGGCAAAAGAATCCTACGATCAAGCCATTGCTGCACTCGAGAAACTCCTCAG</genome_strand>
        <mrna_strand>TACTATTTAGTAACATAGTAGTCTAAAGGGCAAGCAAAAGCTAAAGGAAGCTCATTGAGAAATGTCAACTGCTTCCATTAACAATTGCCTTACTCTCTCCCCTGCTCAAGCTTCCCTTAAGAAACCTACTCGTCCCGTTGCCTTCGCAAGGCTTGGCAACTCTTCTTCTTCTTCTTCTATTCCAAGTCTCATCAGAAACGAGCCCGTCTTTGCTGCCCCTACTCCCATCATCAACCCCATTGTG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGAGAAGAAATGGCAAAAGAATCCTACGATCAAGCCATTGCTGCACTCGAGAAACTCCTCAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0236E02-u8qcS/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E367615" ref_strand="+" ref_description="SGN-E367615 [cLPT-14-I15]">
      <seq>actagttagtaacaaagtagtataaagggaaagcaaaagctaaaggaagctcattgagaaatgtcaactgcttccattaacaattgccttactctctcccctgctcaagcttcccttaagaaacctactcgtcccgttgccttcgcaaggcttggcaactcttcttcttcttcttcttcttctattccaagtctcatcagaaacgagcccgtctttgctgcccctactcccatcatcaaccccattgtgagagaagaaatggcaaaagaatcctacgatcaggccgttgctgcactcgagaaactcctcagcgagaaagcagaacttggaccagttgctgcagcaagagttgaccagatcactgctgaattgaaatcagcagatggcggcaaggcattcgaccctgttgagcacatgaaagctggctttattcatttcaagactgagaaatatgatacaaacccagccttatatggtgaactagcaaagggccagagcccaaagttcatggttttcgcgtgctctgactcacgagtgtgcccatcccatgtcctcaac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0236E02-u8qcS/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0236E02.1" temp_strand="+" temp_description="C02HBa0236E02.1  AC215430.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0236E02 sequenced_by:kribb upload_account_name:korea">
        <position start="14640" stop="17542"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="14940" g_stop="15182" g_length="243"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="249" r_length="249" r_score="0.947"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="15183" i_stop="16379" i_length="1197">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.971" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="16380" g_stop="16441" g_length="62"/>
          <reference_exon_boundary r_type="cDNA" r_start="250" r_stop="311" r_length="62" r_score="0.968"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="16442" i_stop="16813" i_length="372">
            <donor d_prob="0.999" d_score="0.96"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="16814" g_stop="16957" g_length="144"/>
          <reference_exon_boundary r_type="cDNA" r_start="312" r_stop="455" r_length="144" r_score="0.993"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="16958" i_stop="17055" i_length="98">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="17056" g_stop="17104" g_length="49"/>
          <reference_exon_boundary r_type="cDNA" r_start="456" r_stop="504" r_length="49" r_score="0.939"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="17105" i_stop="17188" i_length="84">
            <donor d_prob="1.000" d_score="0.94"/>
            <acceptor a_prob="0.961" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="17189" g_stop="17242" g_length="54"/>
          <reference_exon_boundary r_type="cDNA" r_start="505" r_stop="558" r_length="54" r_score="0.981"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0236E02.1" gen_strand="+" ref_id="SGN-E367615" ref_strand="+">
        <total_alignment_score>0.966</total_alignment_score>
        <cumulative_length_of_scored_exons>552</cumulative_length_of_scored_exons>
        <coverage percentage="0.989" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0236E02.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E367615" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="14940" e_stop="15182"/>
          <exon e_start="16380" e_stop="16441"/>
          <exon e_start="16814" e_stop="16957"/>
          <exon e_start="17056" e_stop="17104"/>
          <exon e_start="17189" e_stop="17242"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACTAGTTAGTAACAAAGTAGTATAAAGGGCAAGCAAAAGCTAAAGGAAGCTCATTGAGAAATGTCAACTGCTTCCATTAACAATTGCCTTACTCTCTCCCCTGCTCAAGCTTCCCTTAAGAAACCTACTCGTCCCGTTGCCTTCGCAAGGCTTGGCAA-----C-TCTTCTTCTTCTTCTTCTATTCCAAGTCTCATCAGAAACGAGCCCGTCTTTGCTGCCCCTACTCCCATCATCAACCCCATTGTGGTACGAATTTTTAACTTACATCACTGTATTTTAATCTGTTATAACAAGTTATTTATATTTGACGTTACTTAATTTATTTTTTAAGCAAGACATTTTTTTTGTCTTATCGTATTTTTTGTAACGACTTGTGTCCATGCATGCTAGTTCACGTGAAAATTCAATATTGGCATAGTTCTAAACTTTAGTTTCTAACCACCTTTATTATTGGTATTGTTATTTTTGGCCATGAATCTCCTGAAGTTAGGTGAATTGATCATGTCGCTCTAAATTGTACACGTCTATTGCGTGTACTCAATGACATATAATATATTATTGCAATCCTAAAATAAGTGTTATTTTAATTTATTTTGAACTCATTAAAATAAATATGATATTTTACTGAGTTACTTATATTTATTACTTTGATTTTTTTGAGTACTAATTTGTATTTTGAAACTTTTAAGATGACGAGAGGGTGGAAATAACAAATTAAATTTGAAAATGAACCAAAATAGAGGTGGCAATTAGGTAGAGGTTCTCGCAAAATGAATATTAAATATGTAGGGCCGTATTGTGAATTATGTGGATAATGTTTTTGCTTTCTATTTTTTTTTAAAAAAAATAATTATTACTTACAATAATCCAACGGGTATCCTCGTATGTGCCCATCCTACAAGTGATAAAATGATAAGTACCAGTCTACCATCAAGTTTGTAGGATAGAAACTATTTAGTATACATTGTTTTTGTCTTAATTTCTAGTTTTGGTATCCATCTAAATCGATACTCCATTATGTTAATTATTTCATTTCTTTCTTTTGACATCTACATCACTTTTTAATGTGGTTACCACTTGCTATAATCATACTTCACTTAGCATTTTATTTGAACTTAGTGAAAGTGAAATTTTTCCTAATAATTGGTCTAAAAATTGAAGAAGATTAAAGCCAAGAAATTGAGTTCTTCCTTCTTTCTTCCAACTTTGAAAGTACCGATAGATACTATCATATAAAAAGAAGAGGTGGTCTGACTAACTCAATGAAGTGAATTTTTCAAAAACATGCTCAGAAAAATGAGAAAAATGGAGTTTTTGAAAAGAAAAATTAACAGATATTTAAAGATAAATTTTTGAAATTTGGTTCAAAATTTATGGTCAAATATTAACTTATATTTATATATATACCTCTTCTAAAATGCTAATGAGAATTAGAATTTGCAGAGAGAAGAAATGGCAAAAGAATCCTACGATCAAGCCATTGCTGCACTCGAGAAACTCCTCAGGTTTGTACTCTCTCTACGACTCTACCTTCTAAATCACACTACTTTTTTCTCGATCAAGTGGGGCCCAAAAAATATACATACACCCACACATACGTAGACAAAAAAAATGTTAAAATTTGCGAATATGCAGAGAAAACATAATATAATCATGCAATGTTTACTCGTAAAATTCAATTTCCCGGCAATGAACATGTTACTTGGTTTCGAGTTCTCCAGATCTGCATTAATTTTACCATTCTATCATCATTTTTTTACCCCATATCTGCATTAATTTATCATGGTAATGGTGCTCAAACCACAAATCTTTTTTTTTTCTACCTGAAATATTGCTTCAATAATAATAATGGTCTAAATTATTTTCTGCAATTACAGCGAGAAAGCAGAACTTGGACCAGTTGCTGCAGCAAGAGTTGACCAGATCACTGCTGAATTGAAATCAGCAGACGGCGGCAAGGCATTCGACCCTGTTGAGCACATGAAAGCTGGCTTTATTCATTTCAAGACTGAGAAATATGAGTAAGCAAATTCATTCAAATTAAAATTTCTGCATATTTGATGTTGTAACATTATTAGTGTCTGATAATTTTTCCTGTTTTCTATTTATGTACCAACAGCACAAACCCAGCCTTATATGGTGAGCTAGCAAAGGGCCAGAGCCCTAAGGTACAAATTCCTTGTTAATTTGTTGTCTAATTTTATGATTTGTACGGTTTCTGATGAGTTCTATTGTCCTAAATGTGTAAACAGTTCATGGTTTTCGCGTGCTCTGACTCACGAGTCTGCCCATCCCATGTCCTCAAC</genome_strand>
        <mrna_strand>ACTAGTTAGTAACAAAGTAGTATAAAGGGAAAGCAAAAGCTAAAGGAAGCTCATTGAGAAATGTCAACTGCTTCCATTAACAATTGCCTTACTCTCTCCCCTGCTCAAGCTTCCCTTAAGAAACCTACTCGTCCCGTTGCCTTCGCAAGGCTTGGCAACTCTTCTTCTTCTTCTTCTTCTTCTATTCCAAGTCTCATCAGAAACGAGCCCGTCTTTGCTGCCCCTACTCCCATCATCAACCCCATTGTG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGAGAAGAAATGGCAAAAGAATCCTACGATCAGGCCGTTGCTGCACTCGAGAAACTCCTCAG....................................................................................................................................................................................................................................................................................................................................................................................CGAGAAAGCAGAACTTGGACCAGTTGCTGCAGCAAGAGTTGACCAGATCACTGCTGAATTGAAATCAGCAGATGGCGGCAAGGCATTCGACCCTGTTGAGCACATGAAAGCTGGCTTTATTCATTTCAAGACTGAGAAATATGA..................................................................................................TACAAACCCAGCCTTATATGGTGAACTAGCAAAGGGCCAGAGCCCAAAG....................................................................................TTCATGGTTTTCGCGTGCTCTGACTCACGAGTGTGCCCATCCCATGTCCTCAAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0236E02-u8qcS/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E726587" ref_strand="+" ref_description="SGN-E726587 [LA12BA09]">
      <seq>ctagttagtaacaaagtagtataaagggcaagcaaaagctaaaggaagctcattgagaaatgtcaactgcttccattaacaattgccttactctctcccctgctcaagcttcccttaagaaacctactcgtcccgttgccttcgcaaggcttggcaactcttcttcttcttcttctattccaagtctcatcagaaacgagcccgtctttgctgcccctactcccatcatcaaccccattgtgagagaagaaatggcaaaagaatcctacgatcaagccattgctgcactcgagaaactcctcagcgagaaagcagaacttggaccagttgctgcagcaagagttgaccagatcactgctgaattgaaatcagcagacggcggcaaggcattcgaccctgttgagcacatgaaagctggctttattcatttcaagactgagaaatatgacacaaacccagccttatatggtgagctagcaaagggccagagccctaagttcatggttttcgcgtgctctgactcacgagtctgcccatcccatgtcctcaacttccaacctggtgaggcattcatggttcgtaacatcgccaacatggtccctgcttatgacaaggtcaggtactctggagtaggagcagccattgaatacgccgttcttcatcttaaggtggagaacatcgttgtcattggccacagtgcttgtggaggtatcaaaggtctcatgtcactacctgaagatggtagtgaatcaactgcctttattgaggattgggtaaaaatttgtttacctgccaaggcaaaggttctggccgatcacggagggaaagaatttgcacatcaatgcacagcttgtgagaaagaagctgtgaacgtttcacttggaaatctgcttacgtatcca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0236E02-u8qcS/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0236E02.1" temp_strand="+" temp_description="C02HBa0236E02.1  AC215430.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0236E02 sequenced_by:kribb upload_account_name:korea">
        <position start="14641" stop="18135"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="14941" g_stop="15182" g_length="242"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="242" r_length="242" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="15183" i_stop="16379" i_length="1197">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.971" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="16380" g_stop="16441" g_length="62"/>
          <reference_exon_boundary r_type="cDNA" r_start="243" r_stop="304" r_length="62" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="16442" i_stop="16813" i_length="372">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="16814" g_stop="16957" g_length="144"/>
          <reference_exon_boundary r_type="cDNA" r_start="305" r_stop="448" r_length="144" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="16958" i_stop="17055" i_length="98">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="17056" g_stop="17104" g_length="49"/>
          <reference_exon_boundary r_type="cDNA" r_start="449" r_stop="497" r_length="49" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="17105" i_stop="17188" i_length="84">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.961" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="17189" g_stop="17305" g_length="117"/>
          <reference_exon_boundary r_type="cDNA" r_start="498" r_stop="614" r_length="117" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="17306" i_stop="17390" i_length="85">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.979" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="17391" g_stop="17530" g_length="140"/>
          <reference_exon_boundary r_type="cDNA" r_start="615" r_stop="754" r_length="140" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="17531" i_stop="17607" i_length="77">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.948" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="17608" g_stop="17713" g_length="106"/>
          <reference_exon_boundary r_type="cDNA" r_start="755" r_stop="860" r_length="106" r_score="0.991"/>
        </exon>
        <intron i_serial="7">
          <gDNA_intron_boundary i_start="17714" i_stop="17793" i_length="80">
            <donor d_prob="1.000" d_score="0.98"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="8">
          <gDNA_exon_boundary g_start="17794" g_stop="17835" g_length="42"/>
          <reference_exon_boundary r_type="cDNA" r_start="861" r_stop="902" r_length="42" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0236E02.1" gen_strand="+" ref_id="SGN-E726587" ref_strand="+">
        <total_alignment_score>0.999</total_alignment_score>
        <cumulative_length_of_scored_exons>902</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0236E02.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E726587" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="14941" e_stop="15182"/>
          <exon e_start="16380" e_stop="16441"/>
          <exon e_start="16814" e_stop="16957"/>
          <exon e_start="17056" e_stop="17104"/>
          <exon e_start="17189" e_stop="17305"/>
          <exon e_start="17391" e_stop="17530"/>
          <exon e_start="17608" e_stop="17713"/>
          <exon e_start="17794" e_stop="17835"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTAGTTAGTAACAAAGTAGTATAAAGGGCAAGCAAAAGCTAAAGGAAGCTCATTGAGAAATGTCAACTGCTTCCATTAACAATTGCCTTACTCTCTCCCCTGCTCAAGCTTCCCTTAAGAAACCTACTCGTCCCGTTGCCTTCGCAAGGCTTGGCAACTCTTCTTCTTCTTCTTCTATTCCAAGTCTCATCAGAAACGAGCCCGTCTTTGCTGCCCCTACTCCCATCATCAACCCCATTGTGGTACGAATTTTTAACTTACATCACTGTATTTTAATCTGTTATAACAAGTTATTTATATTTGACGTTACTTAATTTATTTTTTAAGCAAGACATTTTTTTTGTCTTATCGTATTTTTTGTAACGACTTGTGTCCATGCATGCTAGTTCACGTGAAAATTCAATATTGGCATAGTTCTAAACTTTAGTTTCTAACCACCTTTATTATTGGTATTGTTATTTTTGGCCATGAATCTCCTGAAGTTAGGTGAATTGATCATGTCGCTCTAAATTGTACACGTCTATTGCGTGTACTCAATGACATATAATATATTATTGCAATCCTAAAATAAGTGTTATTTTAATTTATTTTGAACTCATTAAAATAAATATGATATTTTACTGAGTTACTTATATTTATTACTTTGATTTTTTTGAGTACTAATTTGTATTTTGAAACTTTTAAGATGACGAGAGGGTGGAAATAACAAATTAAATTTGAAAATGAACCAAAATAGAGGTGGCAATTAGGTAGAGGTTCTCGCAAAATGAATATTAAATATGTAGGGCCGTATTGTGAATTATGTGGATAATGTTTTTGCTTTCTATTTTTTTTTAAAAAAAATAATTATTACTTACAATAATCCAACGGGTATCCTCGTATGTGCCCATCCTACAAGTGATAAAATGATAAGTACCAGTCTACCATCAAGTTTGTAGGATAGAAACTATTTAGTATACATTGTTTTTGTCTTAATTTCTAGTTTTGGTATCCATCTAAATCGATACTCCATTATGTTAATTATTTCATTTCTTTCTTTTGACATCTACATCACTTTTTAATGTGGTTACCACTTGCTATAATCATACTTCACTTAGCATTTTATTTGAACTTAGTGAAAGTGAAATTTTTCCTAATAATTGGTCTAAAAATTGAAGAAGATTAAAGCCAAGAAATTGAGTTCTTCCTTCTTTCTTCCAACTTTGAAAGTACCGATAGATACTATCATATAAAAAGAAGAGGTGGTCTGACTAACTCAATGAAGTGAATTTTTCAAAAACATGCTCAGAAAAATGAGAAAAATGGAGTTTTTGAAAAGAAAAATTAACAGATATTTAAAGATAAATTTTTGAAATTTGGTTCAAAATTTATGGTCAAATATTAACTTATATTTATATATATACCTCTTCTAAAATGCTAATGAGAATTAGAATTTGCAGAGAGAAGAAATGGCAAAAGAATCCTACGATCAAGCCATTGCTGCACTCGAGAAACTCCTCAGGTTTGTACTCTCTCTACGACTCTACCTTCTAAATCACACTACTTTTTTCTCGATCAAGTGGGGCCCAAAAAATATACATACACCCACACATACGTAGACAAAAAAAATGTTAAAATTTGCGAATATGCAGAGAAAACATAATATAATCATGCAATGTTTACTCGTAAAATTCAATTTCCCGGCAATGAACATGTTACTTGGTTTCGAGTTCTCCAGATCTGCATTAATTTTACCATTCTATCATCATTTTTTTACCCCATATCTGCATTAATTTATCATGGTAATGGTGCTCAAACCACAAATCTTTTTTTTTTCTACCTGAAATATTGCTTCAATAATAATAATGGTCTAAATTATTTTCTGCAATTACAGCGAGAAAGCAGAACTTGGACCAGTTGCTGCAGCAAGAGTTGACCAGATCACTGCTGAATTGAAATCAGCAGACGGCGGCAAGGCATTCGACCCTGTTGAGCACATGAAAGCTGGCTTTATTCATTTCAAGACTGAGAAATATGAGTAAGCAAATTCATTCAAATTAAAATTTCTGCATATTTGATGTTGTAACATTATTAGTGTCTGATAATTTTTCCTGTTTTCTATTTATGTACCAACAGCACAAACCCAGCCTTATATGGTGAGCTAGCAAAGGGCCAGAGCCCTAAGGTACAAATTCCTTGTTAATTTGTTGTCTAATTTTATGATTTGTACGGTTTCTGATGAGTTCTATTGTCCTAAATGTGTAAACAGTTCATGGTTTTCGCGTGCTCTGACTCACGAGTCTGCCCATCCCATGTCCTCAACTTCCAACCTGGTGAGGCATTCATGGTTCGTAACATCGCCAACATGGTCCCTGCTTATGACAAGGTCAGTTACAAATCGATCAACTAGTCGATTATTTCGCTCTGGAATTGTGTTTTTTAAAAATAAAGATGGAATTGAATTTTTACAGGTCAGGTACTCTGGAGTAGGAGCAGCCATTGAATACGCCGTTCTTCATCTTAAGGTGGAGAACATCGTTGTCATTGGCCACAGTGCTTGTGGAGGTATCAAAGGTCTCATGTCACTACCTGAAGATGGTAGTGAATCAACGTACGTCACTCTATAAATCTATTCATTCAAAACACTTATCCTTAACAGATGATTGATTAATAATCTAATATACGCAGTGCCTTTATTGAGGATTGGGTAAAAATTTGTTTACCTGCCAAGGCAAAGGTTCTGGCCGATCACGGAGGGAAAGAATTTGCACATCAATGCACAGCTTGTGAGAAGGTAAAATTCAAATTTAACTTTTTGATTATCAATTAATTACATATATAGCAGTATTTTATAATTGATGAAAAATGTTGCAGGAAGCTGTGAACGTTTCACTTGGAAATCTGCTTACGTATCCA</genome_strand>
        <mrna_strand>CTAGTTAGTAACAAAGTAGTATAAAGGGCAAGCAAAAGCTAAAGGAAGCTCATTGAGAAATGTCAACTGCTTCCATTAACAATTGCCTTACTCTCTCCCCTGCTCAAGCTTCCCTTAAGAAACCTACTCGTCCCGTTGCCTTCGCAAGGCTTGGCAACTCTTCTTCTTCTTCTTCTATTCCAAGTCTCATCAGAAACGAGCCCGTCTTTGCTGCCCCTACTCCCATCATCAACCCCATTGTG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGAGAAGAAATGGCAAAAGAATCCTACGATCAAGCCATTGCTGCACTCGAGAAACTCCTCAG....................................................................................................................................................................................................................................................................................................................................................................................CGAGAAAGCAGAACTTGGACCAGTTGCTGCAGCAAGAGTTGACCAGATCACTGCTGAATTGAAATCAGCAGACGGCGGCAAGGCATTCGACCCTGTTGAGCACATGAAAGCTGGCTTTATTCATTTCAAGACTGAGAAATATGA..................................................................................................CACAAACCCAGCCTTATATGGTGAGCTAGCAAAGGGCCAGAGCCCTAAG....................................................................................TTCATGGTTTTCGCGTGCTCTGACTCACGAGTCTGCCCATCCCATGTCCTCAACTTCCAACCTGGTGAGGCATTCATGGTTCGTAACATCGCCAACATGGTCCCTGCTTATGACAAG.....................................................................................GTCAGGTACTCTGGAGTAGGAGCAGCCATTGAATACGCCGTTCTTCATCTTAAGGTGGAGAACATCGTTGTCATTGGCCACAGTGCTTGTGGAGGTATCAAAGGTCTCATGTCACTACCTGAAGATGGTAGTGAATCAAC.............................................................................TGCCTTTATTGAGGATTGGGTAAAAATTTGTTTACCTGCCAAGGCAAAGGTTCTGGCCGATCACGGAGGGAAAGAATTTGCACATCAATGCACAGCTTGTGAGAAA................................................................................GAAGCTGTGAACGTTTCACTTGGAAATCTGCTTACGTATCCA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0236E02-u8qcS/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E727443" ref_strand="+" ref_description="SGN-E727443 [LA14CH01]">
      <seq>ctagttagtaacaaagtagtataaagggcaagcaaaagctaaaggaagctcattgagaaatgtcaactgcttccattaacaattgccttactctctcccctgctcaagcttcccttaagaaacctactcgtcccgttgccttcgcaaggcttggcaactcttcttcttcttcttctattccaagtctcatcagaaacgagcccgtctttgctgcccctactcccatcatcaaccccattgtgagagaagaaatggcaaaagaatcctacgatcaagccattgctgcactcgagaaactcctcagcgagaaagcagaacttggaccagttgctgcagcaagagttgaccagatcactgctgaattgaaatcagcagacggcggcaaggcattcgaccctgttgagcacatgaaagctggctttattcatttcaagactgagaaatatgacacaaacccagccttatatggtgagctagcaaagggccagagccctaagttcatggttttcgcgtgctctgactcacgagtctgcccatcccatgtcctcaacttccaacctggtgaggcattcatggttcgtaacatcgccaacatggtccctgcttatgacaaggtcaggtactctggagtaggagcagccattgaatacgccgttcttcatcttaaggtggagaacatcgttgtcattggccacagtgcttgtggaggtatcaaaggtctcatgtcactacctgaagatggtagtgaatcaactgcctttattgaggattgggtaaaaatttgtttacctgccaaggcaaaggttctggccgatcacggagggaaagaatttgcacatcaatgcacagcttgtg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0236E02-u8qcS/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0236E02.1" temp_strand="+" temp_description="C02HBa0236E02.1  AC215430.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0236E02 sequenced_by:kribb upload_account_name:korea">
        <position start="14641" stop="18008"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="14941" g_stop="15182" g_length="242"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="242" r_length="242" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="15183" i_stop="16379" i_length="1197">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.971" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="16380" g_stop="16441" g_length="62"/>
          <reference_exon_boundary r_type="cDNA" r_start="243" r_stop="304" r_length="62" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="16442" i_stop="16813" i_length="372">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="16814" g_stop="16957" g_length="144"/>
          <reference_exon_boundary r_type="cDNA" r_start="305" r_stop="448" r_length="144" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="16958" i_stop="17055" i_length="98">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="17056" g_stop="17104" g_length="49"/>
          <reference_exon_boundary r_type="cDNA" r_start="449" r_stop="497" r_length="49" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="17105" i_stop="17188" i_length="84">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.961" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="17189" g_stop="17305" g_length="117"/>
          <reference_exon_boundary r_type="cDNA" r_start="498" r_stop="614" r_length="117" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="17306" i_stop="17390" i_length="85">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.979" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="17391" g_stop="17530" g_length="140"/>
          <reference_exon_boundary r_type="cDNA" r_start="615" r_stop="754" r_length="140" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="17531" i_stop="17607" i_length="77">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.948" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="17608" g_stop="17708" g_length="101"/>
          <reference_exon_boundary r_type="cDNA" r_start="755" r_stop="855" r_length="101" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0236E02.1" gen_strand="+" ref_id="SGN-E727443" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>855</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0236E02.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E727443" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="14941" e_stop="15182"/>
          <exon e_start="16380" e_stop="16441"/>
          <exon e_start="16814" e_stop="16957"/>
          <exon e_start="17056" e_stop="17104"/>
          <exon e_start="17189" e_stop="17305"/>
          <exon e_start="17391" e_stop="17530"/>
          <exon e_start="17608" e_stop="17708"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTAGTTAGTAACAAAGTAGTATAAAGGGCAAGCAAAAGCTAAAGGAAGCTCATTGAGAAATGTCAACTGCTTCCATTAACAATTGCCTTACTCTCTCCCCTGCTCAAGCTTCCCTTAAGAAACCTACTCGTCCCGTTGCCTTCGCAAGGCTTGGCAACTCTTCTTCTTCTTCTTCTATTCCAAGTCTCATCAGAAACGAGCCCGTCTTTGCTGCCCCTACTCCCATCATCAACCCCATTGTGGTACGAATTTTTAACTTACATCACTGTATTTTAATCTGTTATAACAAGTTATTTATATTTGACGTTACTTAATTTATTTTTTAAGCAAGACATTTTTTTTGTCTTATCGTATTTTTTGTAACGACTTGTGTCCATGCATGCTAGTTCACGTGAAAATTCAATATTGGCATAGTTCTAAACTTTAGTTTCTAACCACCTTTATTATTGGTATTGTTATTTTTGGCCATGAATCTCCTGAAGTTAGGTGAATTGATCATGTCGCTCTAAATTGTACACGTCTATTGCGTGTACTCAATGACATATAATATATTATTGCAATCCTAAAATAAGTGTTATTTTAATTTATTTTGAACTCATTAAAATAAATATGATATTTTACTGAGTTACTTATATTTATTACTTTGATTTTTTTGAGTACTAATTTGTATTTTGAAACTTTTAAGATGACGAGAGGGTGGAAATAACAAATTAAATTTGAAAATGAACCAAAATAGAGGTGGCAATTAGGTAGAGGTTCTCGCAAAATGAATATTAAATATGTAGGGCCGTATTGTGAATTATGTGGATAATGTTTTTGCTTTCTATTTTTTTTTAAAAAAAATAATTATTACTTACAATAATCCAACGGGTATCCTCGTATGTGCCCATCCTACAAGTGATAAAATGATAAGTACCAGTCTACCATCAAGTTTGTAGGATAGAAACTATTTAGTATACATTGTTTTTGTCTTAATTTCTAGTTTTGGTATCCATCTAAATCGATACTCCATTATGTTAATTATTTCATTTCTTTCTTTTGACATCTACATCACTTTTTAATGTGGTTACCACTTGCTATAATCATACTTCACTTAGCATTTTATTTGAACTTAGTGAAAGTGAAATTTTTCCTAATAATTGGTCTAAAAATTGAAGAAGATTAAAGCCAAGAAATTGAGTTCTTCCTTCTTTCTTCCAACTTTGAAAGTACCGATAGATACTATCATATAAAAAGAAGAGGTGGTCTGACTAACTCAATGAAGTGAATTTTTCAAAAACATGCTCAGAAAAATGAGAAAAATGGAGTTTTTGAAAAGAAAAATTAACAGATATTTAAAGATAAATTTTTGAAATTTGGTTCAAAATTTATGGTCAAATATTAACTTATATTTATATATATACCTCTTCTAAAATGCTAATGAGAATTAGAATTTGCAGAGAGAAGAAATGGCAAAAGAATCCTACGATCAAGCCATTGCTGCACTCGAGAAACTCCTCAGGTTTGTACTCTCTCTACGACTCTACCTTCTAAATCACACTACTTTTTTCTCGATCAAGTGGGGCCCAAAAAATATACATACACCCACACATACGTAGACAAAAAAAATGTTAAAATTTGCGAATATGCAGAGAAAACATAATATAATCATGCAATGTTTACTCGTAAAATTCAATTTCCCGGCAATGAACATGTTACTTGGTTTCGAGTTCTCCAGATCTGCATTAATTTTACCATTCTATCATCATTTTTTTACCCCATATCTGCATTAATTTATCATGGTAATGGTGCTCAAACCACAAATCTTTTTTTTTTCTACCTGAAATATTGCTTCAATAATAATAATGGTCTAAATTATTTTCTGCAATTACAGCGAGAAAGCAGAACTTGGACCAGTTGCTGCAGCAAGAGTTGACCAGATCACTGCTGAATTGAAATCAGCAGACGGCGGCAAGGCATTCGACCCTGTTGAGCACATGAAAGCTGGCTTTATTCATTTCAAGACTGAGAAATATGAGTAAGCAAATTCATTCAAATTAAAATTTCTGCATATTTGATGTTGTAACATTATTAGTGTCTGATAATTTTTCCTGTTTTCTATTTATGTACCAACAGCACAAACCCAGCCTTATATGGTGAGCTAGCAAAGGGCCAGAGCCCTAAGGTACAAATTCCTTGTTAATTTGTTGTCTAATTTTATGATTTGTACGGTTTCTGATGAGTTCTATTGTCCTAAATGTGTAAACAGTTCATGGTTTTCGCGTGCTCTGACTCACGAGTCTGCCCATCCCATGTCCTCAACTTCCAACCTGGTGAGGCATTCATGGTTCGTAACATCGCCAACATGGTCCCTGCTTATGACAAGGTCAGTTACAAATCGATCAACTAGTCGATTATTTCGCTCTGGAATTGTGTTTTTTAAAAATAAAGATGGAATTGAATTTTTACAGGTCAGGTACTCTGGAGTAGGAGCAGCCATTGAATACGCCGTTCTTCATCTTAAGGTGGAGAACATCGTTGTCATTGGCCACAGTGCTTGTGGAGGTATCAAAGGTCTCATGTCACTACCTGAAGATGGTAGTGAATCAACGTACGTCACTCTATAAATCTATTCATTCAAAACACTTATCCTTAACAGATGATTGATTAATAATCTAATATACGCAGTGCCTTTATTGAGGATTGGGTAAAAATTTGTTTACCTGCCAAGGCAAAGGTTCTGGCCGATCACGGAGGGAAAGAATTTGCACATCAATGCACAGCTTGTG</genome_strand>
        <mrna_strand>CTAGTTAGTAACAAAGTAGTATAAAGGGCAAGCAAAAGCTAAAGGAAGCTCATTGAGAAATGTCAACTGCTTCCATTAACAATTGCCTTACTCTCTCCCCTGCTCAAGCTTCCCTTAAGAAACCTACTCGTCCCGTTGCCTTCGCAAGGCTTGGCAACTCTTCTTCTTCTTCTTCTATTCCAAGTCTCATCAGAAACGAGCCCGTCTTTGCTGCCCCTACTCCCATCATCAACCCCATTGTG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGAGAAGAAATGGCAAAAGAATCCTACGATCAAGCCATTGCTGCACTCGAGAAACTCCTCAG....................................................................................................................................................................................................................................................................................................................................................................................CGAGAAAGCAGAACTTGGACCAGTTGCTGCAGCAAGAGTTGACCAGATCACTGCTGAATTGAAATCAGCAGACGGCGGCAAGGCATTCGACCCTGTTGAGCACATGAAAGCTGGCTTTATTCATTTCAAGACTGAGAAATATGA..................................................................................................CACAAACCCAGCCTTATATGGTGAGCTAGCAAAGGGCCAGAGCCCTAAG....................................................................................TTCATGGTTTTCGCGTGCTCTGACTCACGAGTCTGCCCATCCCATGTCCTCAACTTCCAACCTGGTGAGGCATTCATGGTTCGTAACATCGCCAACATGGTCCCTGCTTATGACAAG.....................................................................................GTCAGGTACTCTGGAGTAGGAGCAGCCATTGAATACGCCGTTCTTCATCTTAAGGTGGAGAACATCGTTGTCATTGGCCACAGTGCTTGTGGAGGTATCAAAGGTCTCATGTCACTACCTGAAGATGGTAGTGAATCAAC.............................................................................TGCCTTTATTGAGGATTGGGTAAAAATTTGTTTACCTGCCAAGGCAAAGGTTCTGGCCGATCACGGAGGGAAAGAATTTGCACATCAATGCACAGCTTGTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0236E02-u8qcS/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E470193" ref_strand="+" ref_description="SGN-E470193 [cSTB-17-C20]">
      <seq>ctagtgagtaacaaagtagtataaagggcaagcaaaagctaaaggaagctcattgagaaatgtcaactgcttccattaacaattgccttactatctcccctgctcaagcttcccttaagaaacctactcgtcccgttgccttcgcaaggcttggcaactcttcttcttcttctattccaagtctcatcagaaacgagcccgtcttcgctgcccctactcccatcatcaaccccattgtgagagaagaaatggcaaaagaatcctacgatcaggccattgctgcactcgagaaactcctcagcgagaaggcagaacttggaccagttgctgcagcaagagttgaccagattactgctgaattgaaatcagcagatggcagcaaggccttcgaccctgttgagcacatgaaaact</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0236E02-u8qcS/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0236E02.1" temp_strand="+" temp_description="C02HBa0236E02.1  AC215430.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0236E02 sequenced_by:kribb upload_account_name:korea">
        <position start="14641" stop="17225"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="14941" g_stop="15182" g_length="242"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="239" r_length="239" r_score="0.975"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="15183" i_stop="16379" i_length="1197">
            <donor d_prob="1.000" d_score="0.98"/>
            <acceptor a_prob="0.971" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="16380" g_stop="16441" g_length="62"/>
          <reference_exon_boundary r_type="cDNA" r_start="240" r_stop="301" r_length="62" r_score="0.984"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="16442" i_stop="16813" i_length="372">
            <donor d_prob="0.999" d_score="0.98"/>
            <acceptor a_prob="1.000" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="16814" g_stop="16925" g_length="112"/>
          <reference_exon_boundary r_type="cDNA" r_start="302" r_stop="413" r_length="112" r_score="0.946"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0236E02.1" gen_strand="+" ref_id="SGN-E470193" ref_strand="+">
        <total_alignment_score>0.969</total_alignment_score>
        <cumulative_length_of_scored_exons>416</cumulative_length_of_scored_exons>
        <coverage percentage="1.007" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0236E02.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E470193" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="14941" e_stop="15182"/>
          <exon e_start="16380" e_stop="16441"/>
          <exon e_start="16814" e_stop="16925"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTAGTTAGTAACAAAGTAGTATAAAGGGCAAGCAAAAGCTAAAGGAAGCTCATTGAGAAATGTCAACTGCTTCCATTAACAATTGCCTTACTCTCTCCCCTGCTCAAGCTTCCCTTAAGAAACCTACTCGTCCCGTTGCCTTCGCAAGGCTTGGCAACTCTTCTTCTTCTTCTTCTATTCCAAGTCTCATCAGAAACGAGCCCGTCTTTGCTGCCCCTACTCCCATCATCAACCCCATTGTGGTACGAATTTTTAACTTACATCACTGTATTTTAATCTGTTATAACAAGTTATTTATATTTGACGTTACTTAATTTATTTTTTAAGCAAGACATTTTTTTTGTCTTATCGTATTTTTTGTAACGACTTGTGTCCATGCATGCTAGTTCACGTGAAAATTCAATATTGGCATAGTTCTAAACTTTAGTTTCTAACCACCTTTATTATTGGTATTGTTATTTTTGGCCATGAATCTCCTGAAGTTAGGTGAATTGATCATGTCGCTCTAAATTGTACACGTCTATTGCGTGTACTCAATGACATATAATATATTATTGCAATCCTAAAATAAGTGTTATTTTAATTTATTTTGAACTCATTAAAATAAATATGATATTTTACTGAGTTACTTATATTTATTACTTTGATTTTTTTGAGTACTAATTTGTATTTTGAAACTTTTAAGATGACGAGAGGGTGGAAATAACAAATTAAATTTGAAAATGAACCAAAATAGAGGTGGCAATTAGGTAGAGGTTCTCGCAAAATGAATATTAAATATGTAGGGCCGTATTGTGAATTATGTGGATAATGTTTTTGCTTTCTATTTTTTTTTAAAAAAAATAATTATTACTTACAATAATCCAACGGGTATCCTCGTATGTGCCCATCCTACAAGTGATAAAATGATAAGTACCAGTCTACCATCAAGTTTGTAGGATAGAAACTATTTAGTATACATTGTTTTTGTCTTAATTTCTAGTTTTGGTATCCATCTAAATCGATACTCCATTATGTTAATTATTTCATTTCTTTCTTTTGACATCTACATCACTTTTTAATGTGGTTACCACTTGCTATAATCATACTTCACTTAGCATTTTATTTGAACTTAGTGAAAGTGAAATTTTTCCTAATAATTGGTCTAAAAATTGAAGAAGATTAAAGCCAAGAAATTGAGTTCTTCCTTCTTTCTTCCAACTTTGAAAGTACCGATAGATACTATCATATAAAAAGAAGAGGTGGTCTGACTAACTCAATGAAGTGAATTTTTCAAAAACATGCTCAGAAAAATGAGAAAAATGGAGTTTTTGAAAAGAAAAATTAACAGATATTTAAAGATAAATTTTTGAAATTTGGTTCAAAATTTATGGTCAAATATTAACTTATATTTATATATATACCTCTTCTAAAATGCTAATGAGAATTAGAATTTGCAGAGAGAAGAAATGGCAAAAGAATCCTACGATCAAGCCATTGCTGCACTCGAGAAACTCCTCAGGTTTGTACTCTCTCTACGACTCTACCTTCTAAATCACACTACTTTTTTCTCGATCAAGTGGGGCCCAAAAAATATACATACACCCACACATACGTAGACAAAAAAAATGTTAAAATTTGCGAATATGCAGAGAAAACATAATATAATCATGCAATGTTTACTCGTAAAATTCAATTTCCCGGCAATGAACATGTTACTTGGTTTCGAGTTCTCCAGATCTGCATTAATTTTACCATTCTATCATCATTTTTTTACCCCATATCTGCATTAATTTATCATGGTAATGGTGCTCAAACCACAAATCTTTTTTTTTTCTACCTGAAATATTGCTTCAATAATAATAATGGTCTAAATTATTTTCTGCAATTACAGCGAGAAAGCAGAACTTGGACCAGTTGCTGCAGCAAGAGTTGACCAGATCACTGCTGAATTGAAATCAGCAGACGGCGGCAAGGCATTCGACCCTGTTGAGCACATGAAAGCT</genome_strand>
        <mrna_strand>CTAGTGAGTAACAAAGTAGTATAAAGGGCAAGCAAAAGCTAAAGGAAGCTCATTGAGAAATGTCAACTGCTTCCATTAACAATTGCCTTACTATCTCCCCTGCTCAAGCTTCCCTTAAGAAACCTACTCGTCCCGTTGCCTTCGCAAGGCTTGGCAA--C-TCTTCTTCTTCTTCTATTCCAAGTCTCATCAGAAACGAGCCCGTCTTCGCTGCCCCTACTCCCATCATCAACCCCATTGTG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGAGAAGAAATGGCAAAAGAATCCTACGATCAGGCCATTGCTGCACTCGAGAAACTCCTCAG....................................................................................................................................................................................................................................................................................................................................................................................CGAGAAGGCAGAACTTGGACCAGTTGCTGCAGCAAGAGTTGACCAGATTACTGCTGAATTGAAATCAGCAGATGGCAGCAAGGCCTTCGACCCTGTTGAGCACATGAAAACT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0236E02-u8qcS/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E470205" ref_strand="+" ref_description="SGN-E470205 [cSTB-17-E24]">
      <seq>ctagtgagtaacaaagtagtataaagggcaagcaaaagctaaaggaagctcattgagaaatgtcaactgcttccattaacaattgccttactatctcccctgctcaagcttcccttaagaaacctactcgtcccgttgccttcgcaaggcttggcaactcttcttcttcttctattccaagtctcatcagaaacgagcccgtcttcgctgcccctactcccatcatcaaccccattgtgagagaagaaatggcaaaagaatcctacgatcaggccattgctgcactcgagaaactcctcagcgagaaggcagaacttggaccagttgctgcagcaagagttgaccagattactgctgaattgaaatcagcagatggcagcaaggccttcgaccctgttgagcacatgaaaact</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0236E02-u8qcS/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0236E02.1" temp_strand="+" temp_description="C02HBa0236E02.1  AC215430.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0236E02 sequenced_by:kribb upload_account_name:korea">
        <position start="14641" stop="17225"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="14941" g_stop="15182" g_length="242"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="239" r_length="239" r_score="0.975"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="15183" i_stop="16379" i_length="1197">
            <donor d_prob="1.000" d_score="0.98"/>
            <acceptor a_prob="0.971" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="16380" g_stop="16441" g_length="62"/>
          <reference_exon_boundary r_type="cDNA" r_start="240" r_stop="301" r_length="62" r_score="0.984"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="16442" i_stop="16813" i_length="372">
            <donor d_prob="0.999" d_score="0.98"/>
            <acceptor a_prob="1.000" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="16814" g_stop="16925" g_length="112"/>
          <reference_exon_boundary r_type="cDNA" r_start="302" r_stop="413" r_length="112" r_score="0.946"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0236E02.1" gen_strand="+" ref_id="SGN-E470205" ref_strand="+">
        <total_alignment_score>0.969</total_alignment_score>
        <cumulative_length_of_scored_exons>416</cumulative_length_of_scored_exons>
        <coverage percentage="1.007" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0236E02.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E470205" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="14941" e_stop="15182"/>
          <exon e_start="16380" e_stop="16441"/>
          <exon e_start="16814" e_stop="16925"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTAGTTAGTAACAAAGTAGTATAAAGGGCAAGCAAAAGCTAAAGGAAGCTCATTGAGAAATGTCAACTGCTTCCATTAACAATTGCCTTACTCTCTCCCCTGCTCAAGCTTCCCTTAAGAAACCTACTCGTCCCGTTGCCTTCGCAAGGCTTGGCAACTCTTCTTCTTCTTCTTCTATTCCAAGTCTCATCAGAAACGAGCCCGTCTTTGCTGCCCCTACTCCCATCATCAACCCCATTGTGGTACGAATTTTTAACTTACATCACTGTATTTTAATCTGTTATAACAAGTTATTTATATTTGACGTTACTTAATTTATTTTTTAAGCAAGACATTTTTTTTGTCTTATCGTATTTTTTGTAACGACTTGTGTCCATGCATGCTAGTTCACGTGAAAATTCAATATTGGCATAGTTCTAAACTTTAGTTTCTAACCACCTTTATTATTGGTATTGTTATTTTTGGCCATGAATCTCCTGAAGTTAGGTGAATTGATCATGTCGCTCTAAATTGTACACGTCTATTGCGTGTACTCAATGACATATAATATATTATTGCAATCCTAAAATAAGTGTTATTTTAATTTATTTTGAACTCATTAAAATAAATATGATATTTTACTGAGTTACTTATATTTATTACTTTGATTTTTTTGAGTACTAATTTGTATTTTGAAACTTTTAAGATGACGAGAGGGTGGAAATAACAAATTAAATTTGAAAATGAACCAAAATAGAGGTGGCAATTAGGTAGAGGTTCTCGCAAAATGAATATTAAATATGTAGGGCCGTATTGTGAATTATGTGGATAATGTTTTTGCTTTCTATTTTTTTTTAAAAAAAATAATTATTACTTACAATAATCCAACGGGTATCCTCGTATGTGCCCATCCTACAAGTGATAAAATGATAAGTACCAGTCTACCATCAAGTTTGTAGGATAGAAACTATTTAGTATACATTGTTTTTGTCTTAATTTCTAGTTTTGGTATCCATCTAAATCGATACTCCATTATGTTAATTATTTCATTTCTTTCTTTTGACATCTACATCACTTTTTAATGTGGTTACCACTTGCTATAATCATACTTCACTTAGCATTTTATTTGAACTTAGTGAAAGTGAAATTTTTCCTAATAATTGGTCTAAAAATTGAAGAAGATTAAAGCCAAGAAATTGAGTTCTTCCTTCTTTCTTCCAACTTTGAAAGTACCGATAGATACTATCATATAAAAAGAAGAGGTGGTCTGACTAACTCAATGAAGTGAATTTTTCAAAAACATGCTCAGAAAAATGAGAAAAATGGAGTTTTTGAAAAGAAAAATTAACAGATATTTAAAGATAAATTTTTGAAATTTGGTTCAAAATTTATGGTCAAATATTAACTTATATTTATATATATACCTCTTCTAAAATGCTAATGAGAATTAGAATTTGCAGAGAGAAGAAATGGCAAAAGAATCCTACGATCAAGCCATTGCTGCACTCGAGAAACTCCTCAGGTTTGTACTCTCTCTACGACTCTACCTTCTAAATCACACTACTTTTTTCTCGATCAAGTGGGGCCCAAAAAATATACATACACCCACACATACGTAGACAAAAAAAATGTTAAAATTTGCGAATATGCAGAGAAAACATAATATAATCATGCAATGTTTACTCGTAAAATTCAATTTCCCGGCAATGAACATGTTACTTGGTTTCGAGTTCTCCAGATCTGCATTAATTTTACCATTCTATCATCATTTTTTTACCCCATATCTGCATTAATTTATCATGGTAATGGTGCTCAAACCACAAATCTTTTTTTTTTCTACCTGAAATATTGCTTCAATAATAATAATGGTCTAAATTATTTTCTGCAATTACAGCGAGAAAGCAGAACTTGGACCAGTTGCTGCAGCAAGAGTTGACCAGATCACTGCTGAATTGAAATCAGCAGACGGCGGCAAGGCATTCGACCCTGTTGAGCACATGAAAGCT</genome_strand>
        <mrna_strand>CTAGTGAGTAACAAAGTAGTATAAAGGGCAAGCAAAAGCTAAAGGAAGCTCATTGAGAAATGTCAACTGCTTCCATTAACAATTGCCTTACTATCTCCCCTGCTCAAGCTTCCCTTAAGAAACCTACTCGTCCCGTTGCCTTCGCAAGGCTTGGCAA--C-TCTTCTTCTTCTTCTATTCCAAGTCTCATCAGAAACGAGCCCGTCTTCGCTGCCCCTACTCCCATCATCAACCCCATTGTG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGAGAAGAAATGGCAAAAGAATCCTACGATCAGGCCATTGCTGCACTCGAGAAACTCCTCAG....................................................................................................................................................................................................................................................................................................................................................................................CGAGAAGGCAGAACTTGGACCAGTTGCTGCAGCAAGAGTTGACCAGATTACTGCTGAATTGAAATCAGCAGATGGCAGCAAGGCCTTCGACCCTGTTGAGCACATGAAAACT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0236E02-u8qcS/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E325516" ref_strand="+" ref_description="SGN-E325516 [cTOC-15-C23]">
      <seq>tagttagtaacaaagtagtataaagggcaagcaaaagctaaaggaagctcattgagaaatgtcaactgcttccattaacaattgccttactctctcccctgctcaagcttcccttaagaaacctactcgtcccgttgccttcgcaaggcttggcaactcttcttcttcttcttctattccaagtctcatcagaaacgagcccgtctttgctgcccctactcccatcatcaaccccattgtgagagaagaaatggcaaaagaatcctacgatcaagccattgctgcactcgagaaactcctcagcgagaaagcagaacttggaccagttgctgcagcaagagttgaccagatcactgctgaattgaaatcagcagacggcggcaaggcattcgaccctgttgagcacatgaaagctggctttattcatttcaagactgagaaatatgacacaaacccagccttatatggtgagctagcaaagggccagagccctaagttcatggttttcgcgtgctctgactcacgagtctgcccatcccatgtcctcaacttccaacctggtgaggcattcatggttcgtaacat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0236E02-u8qcS/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0236E02.1" temp_strand="+" temp_description="C02HBa0236E02.1  AC215430.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0236E02 sequenced_by:kribb upload_account_name:korea">
        <position start="14642" stop="17577"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="14942" g_stop="15182" g_length="241"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="241" r_length="241" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="15183" i_stop="16379" i_length="1197">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.971" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="16380" g_stop="16441" g_length="62"/>
          <reference_exon_boundary r_type="cDNA" r_start="242" r_stop="303" r_length="62" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="16442" i_stop="16813" i_length="372">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="16814" g_stop="16957" g_length="144"/>
          <reference_exon_boundary r_type="cDNA" r_start="304" r_stop="447" r_length="144" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="16958" i_stop="17055" i_length="98">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="17056" g_stop="17104" g_length="49"/>
          <reference_exon_boundary r_type="cDNA" r_start="448" r_stop="496" r_length="49" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="17105" i_stop="17188" i_length="84">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.961" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="17189" g_stop="17277" g_length="89"/>
          <reference_exon_boundary r_type="cDNA" r_start="497" r_stop="585" r_length="89" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0236E02.1" gen_strand="+" ref_id="SGN-E325516" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>585</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0236E02.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E325516" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="14942" e_stop="15182"/>
          <exon e_start="16380" e_stop="16441"/>
          <exon e_start="16814" e_stop="16957"/>
          <exon e_start="17056" e_stop="17104"/>
          <exon e_start="17189" e_stop="17277"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TAGTTAGTAACAAAGTAGTATAAAGGGCAAGCAAAAGCTAAAGGAAGCTCATTGAGAAATGTCAACTGCTTCCATTAACAATTGCCTTACTCTCTCCCCTGCTCAAGCTTCCCTTAAGAAACCTACTCGTCCCGTTGCCTTCGCAAGGCTTGGCAACTCTTCTTCTTCTTCTTCTATTCCAAGTCTCATCAGAAACGAGCCCGTCTTTGCTGCCCCTACTCCCATCATCAACCCCATTGTGGTACGAATTTTTAACTTACATCACTGTATTTTAATCTGTTATAACAAGTTATTTATATTTGACGTTACTTAATTTATTTTTTAAGCAAGACATTTTTTTTGTCTTATCGTATTTTTTGTAACGACTTGTGTCCATGCATGCTAGTTCACGTGAAAATTCAATATTGGCATAGTTCTAAACTTTAGTTTCTAACCACCTTTATTATTGGTATTGTTATTTTTGGCCATGAATCTCCTGAAGTTAGGTGAATTGATCATGTCGCTCTAAATTGTACACGTCTATTGCGTGTACTCAATGACATATAATATATTATTGCAATCCTAAAATAAGTGTTATTTTAATTTATTTTGAACTCATTAAAATAAATATGATATTTTACTGAGTTACTTATATTTATTACTTTGATTTTTTTGAGTACTAATTTGTATTTTGAAACTTTTAAGATGACGAGAGGGTGGAAATAACAAATTAAATTTGAAAATGAACCAAAATAGAGGTGGCAATTAGGTAGAGGTTCTCGCAAAATGAATATTAAATATGTAGGGCCGTATTGTGAATTATGTGGATAATGTTTTTGCTTTCTATTTTTTTTTAAAAAAAATAATTATTACTTACAATAATCCAACGGGTATCCTCGTATGTGCCCATCCTACAAGTGATAAAATGATAAGTACCAGTCTACCATCAAGTTTGTAGGATAGAAACTATTTAGTATACATTGTTTTTGTCTTAATTTCTAGTTTTGGTATCCATCTAAATCGATACTCCATTATGTTAATTATTTCATTTCTTTCTTTTGACATCTACATCACTTTTTAATGTGGTTACCACTTGCTATAATCATACTTCACTTAGCATTTTATTTGAACTTAGTGAAAGTGAAATTTTTCCTAATAATTGGTCTAAAAATTGAAGAAGATTAAAGCCAAGAAATTGAGTTCTTCCTTCTTTCTTCCAACTTTGAAAGTACCGATAGATACTATCATATAAAAAGAAGAGGTGGTCTGACTAACTCAATGAAGTGAATTTTTCAAAAACATGCTCAGAAAAATGAGAAAAATGGAGTTTTTGAAAAGAAAAATTAACAGATATTTAAAGATAAATTTTTGAAATTTGGTTCAAAATTTATGGTCAAATATTAACTTATATTTATATATATACCTCTTCTAAAATGCTAATGAGAATTAGAATTTGCAGAGAGAAGAAATGGCAAAAGAATCCTACGATCAAGCCATTGCTGCACTCGAGAAACTCCTCAGGTTTGTACTCTCTCTACGACTCTACCTTCTAAATCACACTACTTTTTTCTCGATCAAGTGGGGCCCAAAAAATATACATACACCCACACATACGTAGACAAAAAAAATGTTAAAATTTGCGAATATGCAGAGAAAACATAATATAATCATGCAATGTTTACTCGTAAAATTCAATTTCCCGGCAATGAACATGTTACTTGGTTTCGAGTTCTCCAGATCTGCATTAATTTTACCATTCTATCATCATTTTTTTACCCCATATCTGCATTAATTTATCATGGTAATGGTGCTCAAACCACAAATCTTTTTTTTTTCTACCTGAAATATTGCTTCAATAATAATAATGGTCTAAATTATTTTCTGCAATTACAGCGAGAAAGCAGAACTTGGACCAGTTGCTGCAGCAAGAGTTGACCAGATCACTGCTGAATTGAAATCAGCAGACGGCGGCAAGGCATTCGACCCTGTTGAGCACATGAAAGCTGGCTTTATTCATTTCAAGACTGAGAAATATGAGTAAGCAAATTCATTCAAATTAAAATTTCTGCATATTTGATGTTGTAACATTATTAGTGTCTGATAATTTTTCCTGTTTTCTATTTATGTACCAACAGCACAAACCCAGCCTTATATGGTGAGCTAGCAAAGGGCCAGAGCCCTAAGGTACAAATTCCTTGTTAATTTGTTGTCTAATTTTATGATTTGTACGGTTTCTGATGAGTTCTATTGTCCTAAATGTGTAAACAGTTCATGGTTTTCGCGTGCTCTGACTCACGAGTCTGCCCATCCCATGTCCTCAACTTCCAACCTGGTGAGGCATTCATGGTTCGTAACAT</genome_strand>
        <mrna_strand>TAGTTAGTAACAAAGTAGTATAAAGGGCAAGCAAAAGCTAAAGGAAGCTCATTGAGAAATGTCAACTGCTTCCATTAACAATTGCCTTACTCTCTCCCCTGCTCAAGCTTCCCTTAAGAAACCTACTCGTCCCGTTGCCTTCGCAAGGCTTGGCAACTCTTCTTCTTCTTCTTCTATTCCAAGTCTCATCAGAAACGAGCCCGTCTTTGCTGCCCCTACTCCCATCATCAACCCCATTGTG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGAGAAGAAATGGCAAAAGAATCCTACGATCAAGCCATTGCTGCACTCGAGAAACTCCTCAG....................................................................................................................................................................................................................................................................................................................................................................................CGAGAAAGCAGAACTTGGACCAGTTGCTGCAGCAAGAGTTGACCAGATCACTGCTGAATTGAAATCAGCAGACGGCGGCAAGGCATTCGACCCTGTTGAGCACATGAAAGCTGGCTTTATTCATTTCAAGACTGAGAAATATGA..................................................................................................CACAAACCCAGCCTTATATGGTGAGCTAGCAAAGGGCCAGAGCCCTAAG....................................................................................TTCATGGTTTTCGCGTGCTCTGACTCACGAGTCTGCCCATCCCATGTCCTCAACTTCCAACCTGGTGAGGCATTCATGGTTCGTAACAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0236E02-u8qcS/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E358635" ref_strand="+" ref_description="SGN-E358635 [cLHT-22-A22]">
      <seq>tagttagtaacaaagtagtataaagggcaagcaaaagctaaaggaagctcattgagaaatgtcaactgcttccattaacaattgcctcactctctcccctgctcaagcttcccttaagaaacctactcgtcccgttgccttcgcaaggcttggcaactcttcttcttcttcttcttctattccaagtctcatcagaaacgagcccgtctttgctgcccctactcccatcatcaaccccattgtgagagaagaaatggcaaaagaatcctacgatcaggccattgctgcactcgagaaactcctcagcgagaaagcagaacttggaccagttgctgcagcaagagttgatcagatcactgctgaattgaaatcagcagatggcggcaaggcattcgaccctgttgagcacatgaaagctggctttattcatttcaagactgagaaatatgatacaaacccagccttatatggtgaactagcaaagggccagagccctaagttcatggttttcgcgtgctctgactca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0236E02-u8qcS/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0236E02.1" temp_strand="+" temp_description="C02HBa0236E02.1  AC215430.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0236E02 sequenced_by:kribb upload_account_name:korea">
        <position start="14642" stop="17515"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="14942" g_stop="15182" g_length="241"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="244" r_length="244" r_score="0.971"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="15183" i_stop="16379" i_length="1197">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.971" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="16380" g_stop="16441" g_length="62"/>
          <reference_exon_boundary r_type="cDNA" r_start="245" r_stop="306" r_length="62" r_score="0.984"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="16442" i_stop="16813" i_length="372">
            <donor d_prob="0.999" d_score="0.98"/>
            <acceptor a_prob="1.000" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="16814" g_stop="16957" g_length="144"/>
          <reference_exon_boundary r_type="cDNA" r_start="307" r_stop="450" r_length="144" r_score="0.986"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="16958" i_stop="17055" i_length="98">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="17056" g_stop="17104" g_length="49"/>
          <reference_exon_boundary r_type="cDNA" r_start="451" r_stop="499" r_length="49" r_score="0.959"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="17105" i_stop="17188" i_length="84">
            <donor d_prob="1.000" d_score="0.96"/>
            <acceptor a_prob="0.961" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="17189" g_stop="17215" g_length="27"/>
          <reference_exon_boundary r_type="cDNA" r_start="500" r_stop="526" r_length="27" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0236E02.1" gen_strand="+" ref_id="SGN-E358635" ref_strand="+">
        <total_alignment_score>0.978</total_alignment_score>
        <cumulative_length_of_scored_exons>523</cumulative_length_of_scored_exons>
        <coverage percentage="0.994" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0236E02.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E358635" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="14942" e_stop="15182"/>
          <exon e_start="16380" e_stop="16441"/>
          <exon e_start="16814" e_stop="16957"/>
          <exon e_start="17056" e_stop="17104"/>
          <exon e_start="17189" e_stop="17215"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TAGTTAGTAACAAAGTAGTATAAAGGGCAAGCAAAAGCTAAAGGAAGCTCATTGAGAAATGTCAACTGCTTCCATTAACAATTGCCTTACTCTCTCCCCTGCTCAAGCTTCCCTTAAGAAACCTACTCGTCCCGTTGCCTTCGCAAGGCTTGGCAA--C-TCTTCTTCTTCTTCTTCTATTCCAAGTCTCATCAGAAACGAGCCCGTCTTTGCTGCCCCTACTCCCATCATCAACCCCATTGTGGTACGAATTTTTAACTTACATCACTGTATTTTAATCTGTTATAACAAGTTATTTATATTTGACGTTACTTAATTTATTTTTTAAGCAAGACATTTTTTTTGTCTTATCGTATTTTTTGTAACGACTTGTGTCCATGCATGCTAGTTCACGTGAAAATTCAATATTGGCATAGTTCTAAACTTTAGTTTCTAACCACCTTTATTATTGGTATTGTTATTTTTGGCCATGAATCTCCTGAAGTTAGGTGAATTGATCATGTCGCTCTAAATTGTACACGTCTATTGCGTGTACTCAATGACATATAATATATTATTGCAATCCTAAAATAAGTGTTATTTTAATTTATTTTGAACTCATTAAAATAAATATGATATTTTACTGAGTTACTTATATTTATTACTTTGATTTTTTTGAGTACTAATTTGTATTTTGAAACTTTTAAGATGACGAGAGGGTGGAAATAACAAATTAAATTTGAAAATGAACCAAAATAGAGGTGGCAATTAGGTAGAGGTTCTCGCAAAATGAATATTAAATATGTAGGGCCGTATTGTGAATTATGTGGATAATGTTTTTGCTTTCTATTTTTTTTTAAAAAAAATAATTATTACTTACAATAATCCAACGGGTATCCTCGTATGTGCCCATCCTACAAGTGATAAAATGATAAGTACCAGTCTACCATCAAGTTTGTAGGATAGAAACTATTTAGTATACATTGTTTTTGTCTTAATTTCTAGTTTTGGTATCCATCTAAATCGATACTCCATTATGTTAATTATTTCATTTCTTTCTTTTGACATCTACATCACTTTTTAATGTGGTTACCACTTGCTATAATCATACTTCACTTAGCATTTTATTTGAACTTAGTGAAAGTGAAATTTTTCCTAATAATTGGTCTAAAAATTGAAGAAGATTAAAGCCAAGAAATTGAGTTCTTCCTTCTTTCTTCCAACTTTGAAAGTACCGATAGATACTATCATATAAAAAGAAGAGGTGGTCTGACTAACTCAATGAAGTGAATTTTTCAAAAACATGCTCAGAAAAATGAGAAAAATGGAGTTTTTGAAAAGAAAAATTAACAGATATTTAAAGATAAATTTTTGAAATTTGGTTCAAAATTTATGGTCAAATATTAACTTATATTTATATATATACCTCTTCTAAAATGCTAATGAGAATTAGAATTTGCAGAGAGAAGAAATGGCAAAAGAATCCTACGATCAAGCCATTGCTGCACTCGAGAAACTCCTCAGGTTTGTACTCTCTCTACGACTCTACCTTCTAAATCACACTACTTTTTTCTCGATCAAGTGGGGCCCAAAAAATATACATACACCCACACATACGTAGACAAAAAAAATGTTAAAATTTGCGAATATGCAGAGAAAACATAATATAATCATGCAATGTTTACTCGTAAAATTCAATTTCCCGGCAATGAACATGTTACTTGGTTTCGAGTTCTCCAGATCTGCATTAATTTTACCATTCTATCATCATTTTTTTACCCCATATCTGCATTAATTTATCATGGTAATGGTGCTCAAACCACAAATCTTTTTTTTTTCTACCTGAAATATTGCTTCAATAATAATAATGGTCTAAATTATTTTCTGCAATTACAGCGAGAAAGCAGAACTTGGACCAGTTGCTGCAGCAAGAGTTGACCAGATCACTGCTGAATTGAAATCAGCAGACGGCGGCAAGGCATTCGACCCTGTTGAGCACATGAAAGCTGGCTTTATTCATTTCAAGACTGAGAAATATGAGTAAGCAAATTCATTCAAATTAAAATTTCTGCATATTTGATGTTGTAACATTATTAGTGTCTGATAATTTTTCCTGTTTTCTATTTATGTACCAACAGCACAAACCCAGCCTTATATGGTGAGCTAGCAAAGGGCCAGAGCCCTAAGGTACAAATTCCTTGTTAATTTGTTGTCTAATTTTATGATTTGTACGGTTTCTGATGAGTTCTATTGTCCTAAATGTGTAAACAGTTCATGGTTTTCGCGTGCTCTGACTCA</genome_strand>
        <mrna_strand>TAGTTAGTAACAAAGTAGTATAAAGGGCAAGCAAAAGCTAAAGGAAGCTCATTGAGAAATGTCAACTGCTTCCATTAACAATTGCCTCACTCTCTCCCCTGCTCAAGCTTCCCTTAAGAAACCTACTCGTCCCGTTGCCTTCGCAAGGCTTGGCAACTCTTCTTCTTCTTCTTCTTCTATTCCAAGTCTCATCAGAAACGAGCCCGTCTTTGCTGCCCCTACTCCCATCATCAACCCCATTGTG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGAGAAGAAATGGCAAAAGAATCCTACGATCAGGCCATTGCTGCACTCGAGAAACTCCTCAG....................................................................................................................................................................................................................................................................................................................................................................................CGAGAAAGCAGAACTTGGACCAGTTGCTGCAGCAAGAGTTGATCAGATCACTGCTGAATTGAAATCAGCAGATGGCGGCAAGGCATTCGACCCTGTTGAGCACATGAAAGCTGGCTTTATTCATTTCAAGACTGAGAAATATGA..................................................................................................TACAAACCCAGCCTTATATGGTGAACTAGCAAAGGGCCAGAGCCCTAAG....................................................................................TTCATGGTTTTCGCGTGCTCTGACTCA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0236E02-u8qcS/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E300615" ref_strand="+" ref_description="SGN-E300615 [cLET-45-D9]">
      <seq>tagttagtaacaaagtagtataaagggcaagcaaaagctaaaggaagctcattgagaaatgtcaactgcttccattaacaattgccttactctctcccctgctcaagcttcccttaagaaacctactcgtcccgttgccttcgcaaggcttggcaactcttcttcttcttcttctattccaagtctcatcagaaacgagcccgtctttgctgcccctactcccatcatcaaccccattgtgagagaagaaatggcaaaagaatcctacgatcaagccattgctgcactcgagaaactcctcagcgagaaagcagaacttggaccagttgctgcagcaagagttgaccagatcactgctgaattgaaatcagcagacggcggcaaggcattcgaccctgttgagcacatgaaagctggctttattcatttcaagactgagaaatatgacacaaacccagccttatatggtgagctagc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0236E02-u8qcS/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0236E02.1" temp_strand="+" temp_description="C02HBa0236E02.1  AC215430.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0236E02 sequenced_by:kribb upload_account_name:korea">
        <position start="14642" stop="17385"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="14942" g_stop="15182" g_length="241"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="241" r_length="241" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="15183" i_stop="16379" i_length="1197">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.971" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="16380" g_stop="16441" g_length="62"/>
          <reference_exon_boundary r_type="cDNA" r_start="242" r_stop="303" r_length="62" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="16442" i_stop="16813" i_length="372">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="16814" g_stop="16957" g_length="144"/>
          <reference_exon_boundary r_type="cDNA" r_start="304" r_stop="447" r_length="144" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="16958" i_stop="17055" i_length="98">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="17056" g_stop="17085" g_length="30"/>
          <reference_exon_boundary r_type="cDNA" r_start="448" r_stop="477" r_length="30" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0236E02.1" gen_strand="+" ref_id="SGN-E300615" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>477</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0236E02.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E300615" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="14942" e_stop="15182"/>
          <exon e_start="16380" e_stop="16441"/>
          <exon e_start="16814" e_stop="16957"/>
          <exon e_start="17056" e_stop="17085"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TAGTTAGTAACAAAGTAGTATAAAGGGCAAGCAAAAGCTAAAGGAAGCTCATTGAGAAATGTCAACTGCTTCCATTAACAATTGCCTTACTCTCTCCCCTGCTCAAGCTTCCCTTAAGAAACCTACTCGTCCCGTTGCCTTCGCAAGGCTTGGCAACTCTTCTTCTTCTTCTTCTATTCCAAGTCTCATCAGAAACGAGCCCGTCTTTGCTGCCCCTACTCCCATCATCAACCCCATTGTGGTACGAATTTTTAACTTACATCACTGTATTTTAATCTGTTATAACAAGTTATTTATATTTGACGTTACTTAATTTATTTTTTAAGCAAGACATTTTTTTTGTCTTATCGTATTTTTTGTAACGACTTGTGTCCATGCATGCTAGTTCACGTGAAAATTCAATATTGGCATAGTTCTAAACTTTAGTTTCTAACCACCTTTATTATTGGTATTGTTATTTTTGGCCATGAATCTCCTGAAGTTAGGTGAATTGATCATGTCGCTCTAAATTGTACACGTCTATTGCGTGTACTCAATGACATATAATATATTATTGCAATCCTAAAATAAGTGTTATTTTAATTTATTTTGAACTCATTAAAATAAATATGATATTTTACTGAGTTACTTATATTTATTACTTTGATTTTTTTGAGTACTAATTTGTATTTTGAAACTTTTAAGATGACGAGAGGGTGGAAATAACAAATTAAATTTGAAAATGAACCAAAATAGAGGTGGCAATTAGGTAGAGGTTCTCGCAAAATGAATATTAAATATGTAGGGCCGTATTGTGAATTATGTGGATAATGTTTTTGCTTTCTATTTTTTTTTAAAAAAAATAATTATTACTTACAATAATCCAACGGGTATCCTCGTATGTGCCCATCCTACAAGTGATAAAATGATAAGTACCAGTCTACCATCAAGTTTGTAGGATAGAAACTATTTAGTATACATTGTTTTTGTCTTAATTTCTAGTTTTGGTATCCATCTAAATCGATACTCCATTATGTTAATTATTTCATTTCTTTCTTTTGACATCTACATCACTTTTTAATGTGGTTACCACTTGCTATAATCATACTTCACTTAGCATTTTATTTGAACTTAGTGAAAGTGAAATTTTTCCTAATAATTGGTCTAAAAATTGAAGAAGATTAAAGCCAAGAAATTGAGTTCTTCCTTCTTTCTTCCAACTTTGAAAGTACCGATAGATACTATCATATAAAAAGAAGAGGTGGTCTGACTAACTCAATGAAGTGAATTTTTCAAAAACATGCTCAGAAAAATGAGAAAAATGGAGTTTTTGAAAAGAAAAATTAACAGATATTTAAAGATAAATTTTTGAAATTTGGTTCAAAATTTATGGTCAAATATTAACTTATATTTATATATATACCTCTTCTAAAATGCTAATGAGAATTAGAATTTGCAGAGAGAAGAAATGGCAAAAGAATCCTACGATCAAGCCATTGCTGCACTCGAGAAACTCCTCAGGTTTGTACTCTCTCTACGACTCTACCTTCTAAATCACACTACTTTTTTCTCGATCAAGTGGGGCCCAAAAAATATACATACACCCACACATACGTAGACAAAAAAAATGTTAAAATTTGCGAATATGCAGAGAAAACATAATATAATCATGCAATGTTTACTCGTAAAATTCAATTTCCCGGCAATGAACATGTTACTTGGTTTCGAGTTCTCCAGATCTGCATTAATTTTACCATTCTATCATCATTTTTTTACCCCATATCTGCATTAATTTATCATGGTAATGGTGCTCAAACCACAAATCTTTTTTTTTTCTACCTGAAATATTGCTTCAATAATAATAATGGTCTAAATTATTTTCTGCAATTACAGCGAGAAAGCAGAACTTGGACCAGTTGCTGCAGCAAGAGTTGACCAGATCACTGCTGAATTGAAATCAGCAGACGGCGGCAAGGCATTCGACCCTGTTGAGCACATGAAAGCTGGCTTTATTCATTTCAAGACTGAGAAATATGAGTAAGCAAATTCATTCAAATTAAAATTTCTGCATATTTGATGTTGTAACATTATTAGTGTCTGATAATTTTTCCTGTTTTCTATTTATGTACCAACAGCACAAACCCAGCCTTATATGGTGAGCTAGC</genome_strand>
        <mrna_strand>TAGTTAGTAACAAAGTAGTATAAAGGGCAAGCAAAAGCTAAAGGAAGCTCATTGAGAAATGTCAACTGCTTCCATTAACAATTGCCTTACTCTCTCCCCTGCTCAAGCTTCCCTTAAGAAACCTACTCGTCCCGTTGCCTTCGCAAGGCTTGGCAACTCTTCTTCTTCTTCTTCTATTCCAAGTCTCATCAGAAACGAGCCCGTCTTTGCTGCCCCTACTCCCATCATCAACCCCATTGTG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGAGAAGAAATGGCAAAAGAATCCTACGATCAAGCCATTGCTGCACTCGAGAAACTCCTCAG....................................................................................................................................................................................................................................................................................................................................................................................CGAGAAAGCAGAACTTGGACCAGTTGCTGCAGCAAGAGTTGACCAGATCACTGCTGAATTGAAATCAGCAGACGGCGGCAAGGCATTCGACCCTGTTGAGCACATGAAAGCTGGCTTTATTCATTTCAAGACTGAGAAATATGA..................................................................................................CACAAACCCAGCCTTATATGGTGAGCTAGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0236E02-u8qcS/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E367007" ref_strand="+" ref_description="SGN-E367007 [cLPT-6-J23]">
      <seq>tagttagtaacaaagtagtataaagggaaagcaaaagctaaaggaagctcattgagaaatgtcaactgcttccattaacaattgccttactctctcccctgctcaagcttcccttaagaaacctactcgtcccgttgccttcgcaaggcttggcaactcttcttcttcttcttcttcttctattccaagtctcatcagaaacgagcccgtttttgctgcccctactcccatcatcaaccccattgtgagagaagaaatggcaaaagaatcctacgatcaggccgttgctgcactcgagaaactcctcagcgagaaagcagaacttggaccagttgctgcagcaagagttgaccagatcactgctgaattgaaatcagcagatggcggcaaggcattcgaccctgttgagcacatgaaagctggctttattcatttcaagactgagaaatatgatacaaacccagccttatatggtgaact</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0236E02-u8qcS/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0236E02.1" temp_strand="+" temp_description="C02HBa0236E02.1  AC215430.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0236E02 sequenced_by:kribb upload_account_name:korea">
        <position start="14642" stop="17382"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="14942" g_stop="15182" g_length="241"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="247" r_length="247" r_score="0.942"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="15183" i_stop="16379" i_length="1197">
            <donor d_prob="1.000" d_score="0.98"/>
            <acceptor a_prob="0.971" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="16380" g_stop="16441" g_length="62"/>
          <reference_exon_boundary r_type="cDNA" r_start="248" r_stop="309" r_length="62" r_score="0.968"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="16442" i_stop="16813" i_length="372">
            <donor d_prob="0.999" d_score="0.96"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="16814" g_stop="16957" g_length="144"/>
          <reference_exon_boundary r_type="cDNA" r_start="310" r_stop="453" r_length="144" r_score="0.993"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="16958" i_stop="17055" i_length="98">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="17056" g_stop="17082" g_length="27"/>
          <reference_exon_boundary r_type="cDNA" r_start="454" r_stop="480" r_length="27" r_score="0.926"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0236E02.1" gen_strand="+" ref_id="SGN-E367007" ref_strand="+">
        <total_alignment_score>0.962</total_alignment_score>
        <cumulative_length_of_scored_exons>474</cumulative_length_of_scored_exons>
        <coverage percentage="0.988" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0236E02.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E367007" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="14942" e_stop="15182"/>
          <exon e_start="16380" e_stop="16441"/>
          <exon e_start="16814" e_stop="16957"/>
          <exon e_start="17056" e_stop="17082"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TAGTTAGTAACAAAGTAGTATAAAGGGCAAGCAAAAGCTAAAGGAAGCTCATTGAGAAATGTCAACTGCTTCCATTAACAATTGCCTTACTCTCTCCCCTGCTCAAGCTTCCCTTAAGAAACCTACTCGTCCCGTTGCCTTCGCAAGGCTTGGCAA-----C-TCTTCTTCTTCTTCTTCTATTCCAAGTCTCATCAGAAACGAGCCCGTCTTTGCTGCCCCTACTCCCATCATCAACCCCATTGTGGTACGAATTTTTAACTTACATCACTGTATTTTAATCTGTTATAACAAGTTATTTATATTTGACGTTACTTAATTTATTTTTTAAGCAAGACATTTTTTTTGTCTTATCGTATTTTTTGTAACGACTTGTGTCCATGCATGCTAGTTCACGTGAAAATTCAATATTGGCATAGTTCTAAACTTTAGTTTCTAACCACCTTTATTATTGGTATTGTTATTTTTGGCCATGAATCTCCTGAAGTTAGGTGAATTGATCATGTCGCTCTAAATTGTACACGTCTATTGCGTGTACTCAATGACATATAATATATTATTGCAATCCTAAAATAAGTGTTATTTTAATTTATTTTGAACTCATTAAAATAAATATGATATTTTACTGAGTTACTTATATTTATTACTTTGATTTTTTTGAGTACTAATTTGTATTTTGAAACTTTTAAGATGACGAGAGGGTGGAAATAACAAATTAAATTTGAAAATGAACCAAAATAGAGGTGGCAATTAGGTAGAGGTTCTCGCAAAATGAATATTAAATATGTAGGGCCGTATTGTGAATTATGTGGATAATGTTTTTGCTTTCTATTTTTTTTTAAAAAAAATAATTATTACTTACAATAATCCAACGGGTATCCTCGTATGTGCCCATCCTACAAGTGATAAAATGATAAGTACCAGTCTACCATCAAGTTTGTAGGATAGAAACTATTTAGTATACATTGTTTTTGTCTTAATTTCTAGTTTTGGTATCCATCTAAATCGATACTCCATTATGTTAATTATTTCATTTCTTTCTTTTGACATCTACATCACTTTTTAATGTGGTTACCACTTGCTATAATCATACTTCACTTAGCATTTTATTTGAACTTAGTGAAAGTGAAATTTTTCCTAATAATTGGTCTAAAAATTGAAGAAGATTAAAGCCAAGAAATTGAGTTCTTCCTTCTTTCTTCCAACTTTGAAAGTACCGATAGATACTATCATATAAAAAGAAGAGGTGGTCTGACTAACTCAATGAAGTGAATTTTTCAAAAACATGCTCAGAAAAATGAGAAAAATGGAGTTTTTGAAAAGAAAAATTAACAGATATTTAAAGATAAATTTTTGAAATTTGGTTCAAAATTTATGGTCAAATATTAACTTATATTTATATATATACCTCTTCTAAAATGCTAATGAGAATTAGAATTTGCAGAGAGAAGAAATGGCAAAAGAATCCTACGATCAAGCCATTGCTGCACTCGAGAAACTCCTCAGGTTTGTACTCTCTCTACGACTCTACCTTCTAAATCACACTACTTTTTTCTCGATCAAGTGGGGCCCAAAAAATATACATACACCCACACATACGTAGACAAAAAAAATGTTAAAATTTGCGAATATGCAGAGAAAACATAATATAATCATGCAATGTTTACTCGTAAAATTCAATTTCCCGGCAATGAACATGTTACTTGGTTTCGAGTTCTCCAGATCTGCATTAATTTTACCATTCTATCATCATTTTTTTACCCCATATCTGCATTAATTTATCATGGTAATGGTGCTCAAACCACAAATCTTTTTTTTTTCTACCTGAAATATTGCTTCAATAATAATAATGGTCTAAATTATTTTCTGCAATTACAGCGAGAAAGCAGAACTTGGACCAGTTGCTGCAGCAAGAGTTGACCAGATCACTGCTGAATTGAAATCAGCAGACGGCGGCAAGGCATTCGACCCTGTTGAGCACATGAAAGCTGGCTTTATTCATTTCAAGACTGAGAAATATGAGTAAGCAAATTCATTCAAATTAAAATTTCTGCATATTTGATGTTGTAACATTATTAGTGTCTGATAATTTTTCCTGTTTTCTATTTATGTACCAACAGCACAAACCCAGCCTTATATGGTGAGCT</genome_strand>
        <mrna_strand>TAGTTAGTAACAAAGTAGTATAAAGGGAAAGCAAAAGCTAAAGGAAGCTCATTGAGAAATGTCAACTGCTTCCATTAACAATTGCCTTACTCTCTCCCCTGCTCAAGCTTCCCTTAAGAAACCTACTCGTCCCGTTGCCTTCGCAAGGCTTGGCAACTCTTCTTCTTCTTCTTCTTCTTCTATTCCAAGTCTCATCAGAAACGAGCCCGTTTTTGCTGCCCCTACTCCCATCATCAACCCCATTGTG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGAGAAGAAATGGCAAAAGAATCCTACGATCAGGCCGTTGCTGCACTCGAGAAACTCCTCAG....................................................................................................................................................................................................................................................................................................................................................................................CGAGAAAGCAGAACTTGGACCAGTTGCTGCAGCAAGAGTTGACCAGATCACTGCTGAATTGAAATCAGCAGATGGCGGCAAGGCATTCGACCCTGTTGAGCACATGAAAGCTGGCTTTATTCATTTCAAGACTGAGAAATATGA..................................................................................................TACAAACCCAGCCTTATATGGTGAACT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0236E02-u8qcS/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E365748" ref_strand="+" ref_description="SGN-E365748 [cLPT-8-H2]">
      <seq>tagttagtaacaaagtagtataaagggaaagcaaaagctaaaggaagctcattgagaaatgtcaactgcttccattaacaattgccttactctctcccctgctcaagcttcccttaagaaacctactcgtcccgttgccttcgcaaggcttggcaactcttcttcttcttcttcttcttctattccaagtctcatcagaaacgagcccgtctttgctgcccctactcccatcatcaaccccattgtgagagaagaaatggcaaaagaatcctacgatcaggccgttgctgcactcgagaaactcctcagcgagaaagcagaacttggaccagttgctgcagcaagagttgaccagatcactgctgaattgaaatcagcagatggcggcaaggcattcgaccctgttgagcacatgaaagctggctttattcatttcaagactgagaaatatgatacaaacccagccttatatg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0236E02-u8qcS/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0236E02.1" temp_strand="+" temp_description="C02HBa0236E02.1  AC215430.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0236E02 sequenced_by:kribb upload_account_name:korea">
        <position start="14642" stop="17260"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="14942" g_stop="15182" g_length="241"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="247" r_length="247" r_score="0.946"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="15183" i_stop="16379" i_length="1197">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.971" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="16380" g_stop="16441" g_length="62"/>
          <reference_exon_boundary r_type="cDNA" r_start="248" r_stop="309" r_length="62" r_score="0.968"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="16442" i_stop="16813" i_length="372">
            <donor d_prob="0.999" d_score="0.96"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="16814" g_stop="16957" g_length="144"/>
          <reference_exon_boundary r_type="cDNA" r_start="310" r_stop="453" r_length="144" r_score="0.993"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="16958" i_stop="17055" i_length="98">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="17056" g_stop="17075" g_length="20"/>
          <reference_exon_boundary r_type="cDNA" r_start="454" r_stop="473" r_length="20" r_score="0.950"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0236E02.1" gen_strand="+" ref_id="SGN-E365748" ref_strand="+">
        <total_alignment_score>0.964</total_alignment_score>
        <cumulative_length_of_scored_exons>467</cumulative_length_of_scored_exons>
        <coverage percentage="0.987" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0236E02.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E365748" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="14942" e_stop="15182"/>
          <exon e_start="16380" e_stop="16441"/>
          <exon e_start="16814" e_stop="16957"/>
          <exon e_start="17056" e_stop="17075"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TAGTTAGTAACAAAGTAGTATAAAGGGCAAGCAAAAGCTAAAGGAAGCTCATTGAGAAATGTCAACTGCTTCCATTAACAATTGCCTTACTCTCTCCCCTGCTCAAGCTTCCCTTAAGAAACCTACTCGTCCCGTTGCCTTCGCAAGGCTTGGCAA-----C-TCTTCTTCTTCTTCTTCTATTCCAAGTCTCATCAGAAACGAGCCCGTCTTTGCTGCCCCTACTCCCATCATCAACCCCATTGTGGTACGAATTTTTAACTTACATCACTGTATTTTAATCTGTTATAACAAGTTATTTATATTTGACGTTACTTAATTTATTTTTTAAGCAAGACATTTTTTTTGTCTTATCGTATTTTTTGTAACGACTTGTGTCCATGCATGCTAGTTCACGTGAAAATTCAATATTGGCATAGTTCTAAACTTTAGTTTCTAACCACCTTTATTATTGGTATTGTTATTTTTGGCCATGAATCTCCTGAAGTTAGGTGAATTGATCATGTCGCTCTAAATTGTACACGTCTATTGCGTGTACTCAATGACATATAATATATTATTGCAATCCTAAAATAAGTGTTATTTTAATTTATTTTGAACTCATTAAAATAAATATGATATTTTACTGAGTTACTTATATTTATTACTTTGATTTTTTTGAGTACTAATTTGTATTTTGAAACTTTTAAGATGACGAGAGGGTGGAAATAACAAATTAAATTTGAAAATGAACCAAAATAGAGGTGGCAATTAGGTAGAGGTTCTCGCAAAATGAATATTAAATATGTAGGGCCGTATTGTGAATTATGTGGATAATGTTTTTGCTTTCTATTTTTTTTTAAAAAAAATAATTATTACTTACAATAATCCAACGGGTATCCTCGTATGTGCCCATCCTACAAGTGATAAAATGATAAGTACCAGTCTACCATCAAGTTTGTAGGATAGAAACTATTTAGTATACATTGTTTTTGTCTTAATTTCTAGTTTTGGTATCCATCTAAATCGATACTCCATTATGTTAATTATTTCATTTCTTTCTTTTGACATCTACATCACTTTTTAATGTGGTTACCACTTGCTATAATCATACTTCACTTAGCATTTTATTTGAACTTAGTGAAAGTGAAATTTTTCCTAATAATTGGTCTAAAAATTGAAGAAGATTAAAGCCAAGAAATTGAGTTCTTCCTTCTTTCTTCCAACTTTGAAAGTACCGATAGATACTATCATATAAAAAGAAGAGGTGGTCTGACTAACTCAATGAAGTGAATTTTTCAAAAACATGCTCAGAAAAATGAGAAAAATGGAGTTTTTGAAAAGAAAAATTAACAGATATTTAAAGATAAATTTTTGAAATTTGGTTCAAAATTTATGGTCAAATATTAACTTATATTTATATATATACCTCTTCTAAAATGCTAATGAGAATTAGAATTTGCAGAGAGAAGAAATGGCAAAAGAATCCTACGATCAAGCCATTGCTGCACTCGAGAAACTCCTCAGGTTTGTACTCTCTCTACGACTCTACCTTCTAAATCACACTACTTTTTTCTCGATCAAGTGGGGCCCAAAAAATATACATACACCCACACATACGTAGACAAAAAAAATGTTAAAATTTGCGAATATGCAGAGAAAACATAATATAATCATGCAATGTTTACTCGTAAAATTCAATTTCCCGGCAATGAACATGTTACTTGGTTTCGAGTTCTCCAGATCTGCATTAATTTTACCATTCTATCATCATTTTTTTACCCCATATCTGCATTAATTTATCATGGTAATGGTGCTCAAACCACAAATCTTTTTTTTTTCTACCTGAAATATTGCTTCAATAATAATAATGGTCTAAATTATTTTCTGCAATTACAGCGAGAAAGCAGAACTTGGACCAGTTGCTGCAGCAAGAGTTGACCAGATCACTGCTGAATTGAAATCAGCAGACGGCGGCAAGGCATTCGACCCTGTTGAGCACATGAAAGCTGGCTTTATTCATTTCAAGACTGAGAAATATGAGTAAGCAAATTCATTCAAATTAAAATTTCTGCATATTTGATGTTGTAACATTATTAGTGTCTGATAATTTTTCCTGTTTTCTATTTATGTACCAACAGCACAAACCCAGCCTTATATG</genome_strand>
        <mrna_strand>TAGTTAGTAACAAAGTAGTATAAAGGGAAAGCAAAAGCTAAAGGAAGCTCATTGAGAAATGTCAACTGCTTCCATTAACAATTGCCTTACTCTCTCCCCTGCTCAAGCTTCCCTTAAGAAACCTACTCGTCCCGTTGCCTTCGCAAGGCTTGGCAACTCTTCTTCTTCTTCTTCTTCTTCTATTCCAAGTCTCATCAGAAACGAGCCCGTCTTTGCTGCCCCTACTCCCATCATCAACCCCATTGTG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGAGAAGAAATGGCAAAAGAATCCTACGATCAGGCCGTTGCTGCACTCGAGAAACTCCTCAG....................................................................................................................................................................................................................................................................................................................................................................................CGAGAAAGCAGAACTTGGACCAGTTGCTGCAGCAAGAGTTGACCAGATCACTGCTGAATTGAAATCAGCAGATGGCGGCAAGGCATTCGACCCTGTTGAGCACATGAAAGCTGGCTTTATTCATTTCAAGACTGAGAAATATGA..................................................................................................TACAAACCCAGCCTTATATG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0236E02-u8qcS/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E278276" ref_strand="-" ref_description="SGN-E278276 [cLEL-2-C11](-)">
      <seq>gcaccagtaacaaagtagtataaaggtcatgcaaaagctaaaggaagctcatggggaaatgtcaactgcttccatctacaactgccttactctctcccctgctcaagcttcccttaagaaacctactcgtcccgttgccttcgcaaggcttggcaactcttcttcttcttcttctattccaagtctcatcagaaacgagcccgtctttgctgcccctactcccatcatcaaccccattgtgagagaagaaatggcagaagaatcctacgatcaagccattgctgcactcgagaaactactcagcgagaaagcagaacttggac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0236E02-u8qcS/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0236E02.1" temp_strand="+" temp_description="C02HBa0236E02.1  AC215430.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0236E02 sequenced_by:kribb upload_account_name:korea">
        <position start="14647" stop="17133"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="14942" g_stop="15182" g_length="241"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="241" r_length="241" r_score="0.950"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="15183" i_stop="16379" i_length="1197">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.971" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="16380" g_stop="16441" g_length="62"/>
          <reference_exon_boundary r_type="cDNA" r_start="242" r_stop="303" r_length="62" r_score="0.968"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="16442" i_stop="16813" i_length="372">
            <donor d_prob="0.999" d_score="0.96"/>
            <acceptor a_prob="1.000" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="16814" g_stop="16833" g_length="20"/>
          <reference_exon_boundary r_type="cDNA" r_start="304" r_stop="323" r_length="20" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0236E02.1" gen_strand="+" ref_id="SGN-E278276" ref_strand="-">
        <total_alignment_score>0.954</total_alignment_score>
        <cumulative_length_of_scored_exons>323</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0236E02.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E278276" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="14942" e_stop="15182"/>
          <exon e_start="16380" e_stop="16441"/>
          <exon e_start="16814" e_stop="16833"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TAGTTAGTAACAAAGTAGTATAAAGGGCAAGCAAAAGCTAAAGGAAGCTCATTGAGAAATGTCAACTGCTTCCATTAACAATTGCCTTACTCTCTCCCCTGCTCAAGCTTCCCTTAAGAAACCTACTCGTCCCGTTGCCTTCGCAAGGCTTGGCAACTCTTCTTCTTCTTCTTCTATTCCAAGTCTCATCAGAAACGAGCCCGTCTTTGCTGCCCCTACTCCCATCATCAACCCCATTGTGGTACGAATTTTTAACTTACATCACTGTATTTTAATCTGTTATAACAAGTTATTTATATTTGACGTTACTTAATTTATTTTTTAAGCAAGACATTTTTTTTGTCTTATCGTATTTTTTGTAACGACTTGTGTCCATGCATGCTAGTTCACGTGAAAATTCAATATTGGCATAGTTCTAAACTTTAGTTTCTAACCACCTTTATTATTGGTATTGTTATTTTTGGCCATGAATCTCCTGAAGTTAGGTGAATTGATCATGTCGCTCTAAATTGTACACGTCTATTGCGTGTACTCAATGACATATAATATATTATTGCAATCCTAAAATAAGTGTTATTTTAATTTATTTTGAACTCATTAAAATAAATATGATATTTTACTGAGTTACTTATATTTATTACTTTGATTTTTTTGAGTACTAATTTGTATTTTGAAACTTTTAAGATGACGAGAGGGTGGAAATAACAAATTAAATTTGAAAATGAACCAAAATAGAGGTGGCAATTAGGTAGAGGTTCTCGCAAAATGAATATTAAATATGTAGGGCCGTATTGTGAATTATGTGGATAATGTTTTTGCTTTCTATTTTTTTTTAAAAAAAATAATTATTACTTACAATAATCCAACGGGTATCCTCGTATGTGCCCATCCTACAAGTGATAAAATGATAAGTACCAGTCTACCATCAAGTTTGTAGGATAGAAACTATTTAGTATACATTGTTTTTGTCTTAATTTCTAGTTTTGGTATCCATCTAAATCGATACTCCATTATGTTAATTATTTCATTTCTTTCTTTTGACATCTACATCACTTTTTAATGTGGTTACCACTTGCTATAATCATACTTCACTTAGCATTTTATTTGAACTTAGTGAAAGTGAAATTTTTCCTAATAATTGGTCTAAAAATTGAAGAAGATTAAAGCCAAGAAATTGAGTTCTTCCTTCTTTCTTCCAACTTTGAAAGTACCGATAGATACTATCATATAAAAAGAAGAGGTGGTCTGACTAACTCAATGAAGTGAATTTTTCAAAAACATGCTCAGAAAAATGAGAAAAATGGAGTTTTTGAAAAGAAAAATTAACAGATATTTAAAGATAAATTTTTGAAATTTGGTTCAAAATTTATGGTCAAATATTAACTTATATTTATATATATACCTCTTCTAAAATGCTAATGAGAATTAGAATTTGCAGAGAGAAGAAATGGCAAAAGAATCCTACGATCAAGCCATTGCTGCACTCGAGAAACTCCTCAGGTTTGTACTCTCTCTACGACTCTACCTTCTAAATCACACTACTTTTTTCTCGATCAAGTGGGGCCCAAAAAATATACATACACCCACACATACGTAGACAAAAAAAATGTTAAAATTTGCGAATATGCAGAGAAAACATAATATAATCATGCAATGTTTACTCGTAAAATTCAATTTCCCGGCAATGAACATGTTACTTGGTTTCGAGTTCTCCAGATCTGCATTAATTTTACCATTCTATCATCATTTTTTTACCCCATATCTGCATTAATTTATCATGGTAATGGTGCTCAAACCACAAATCTTTTTTTTTTCTACCTGAAATATTGCTTCAATAATAATAATGGTCTAAATTATTTTCTGCAATTACAGCGAGAAAGCAGAACTTGGAC</genome_strand>
        <mrna_strand>GCACCAGTAACAAAGTAGTATAAAGGTCATGCAAAAGCTAAAGGAAGCTCATGGGGAAATGTCAACTGCTTCCATCTACAACTGCCTTACTCTCTCCCCTGCTCAAGCTTCCCTTAAGAAACCTACTCGTCCCGTTGCCTTCGCAAGGCTTGGCAACTCTTCTTCTTCTTCTTCTATTCCAAGTCTCATCAGAAACGAGCCCGTCTTTGCTGCCCCTACTCCCATCATCAACCCCATTGTG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGAGAAGAAATGGCAGAAGAATCCTACGATCAAGCCATTGCTGCACTCGAGAAACTACTCAG....................................................................................................................................................................................................................................................................................................................................................................................CGAGAAAGCAGAACTTGGAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0236E02-u8qcS/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E726717" ref_strand="+" ref_description="SGN-E726717 [LA12CE05]">
      <seq>gttagtaacaaagtagtataaagggcaagcaaaagctaaaggaagctcattgagaaatgtcaactgcttccattaacaattgccttactctctcccctgctcaagcttcccttaagaaacctactcgtcccgttgccttcgcaaggcttggcaactcttcttcttcttcttctattccaagtctcatcagaaacgagcccgtctttgctgcccctactcccatcatcaaccccattgtgagagaagaaatggcaaaagaatcctacgatcaagccattgctgcactcgagaaactcctcagcgagaaagcagaacttggaccagttgctgcagcaagagttgaccagatcactgctgaattgaaatcagcagacggcggcaaggcattcgaccctgttgagcacatgaaagctggctttattcatttcaagactgagaaatatgacacaaacccagccttatatggtgagctagcaaagggccagagccctaagttcatggttttcgcgtgctctgactcacgagtctgcccatcccatgtcctcaacttccaacctggtgaggcattcatggttcgtaacatcgccaacatggtccctgcttatgacaaggtcaggtactctggagtaggagcagccattgaatacgccgttcttcatcttaaggtggagaacatcgttgtcattggccacagtgcttgtggaggtatcanaggtctcatgtcactacctgaagatggtagtgaatcaactgcctttattgaggattgggtaaaaatttgtttacctgcccaagcaaaggttctggccgatcacggagggaaaaaattttgcacatcaatgcac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0236E02-u8qcS/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0236E02.1" temp_strand="+" temp_description="C02HBa0236E02.1  AC215430.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0236E02 sequenced_by:kribb upload_account_name:korea">
        <position start="14644" stop="18000"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="14944" g_stop="15182" g_length="239"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="239" r_length="239" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="15183" i_stop="16379" i_length="1197">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.971" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="16380" g_stop="16441" g_length="62"/>
          <reference_exon_boundary r_type="cDNA" r_start="240" r_stop="301" r_length="62" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="16442" i_stop="16813" i_length="372">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="16814" g_stop="16957" g_length="144"/>
          <reference_exon_boundary r_type="cDNA" r_start="302" r_stop="445" r_length="144" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="16958" i_stop="17055" i_length="98">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="17056" g_stop="17104" g_length="49"/>
          <reference_exon_boundary r_type="cDNA" r_start="446" r_stop="494" r_length="49" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="17105" i_stop="17188" i_length="84">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.961" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="17189" g_stop="17305" g_length="117"/>
          <reference_exon_boundary r_type="cDNA" r_start="495" r_stop="611" r_length="117" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="17306" i_stop="17390" i_length="85">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.979" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="17391" g_stop="17530" g_length="140"/>
          <reference_exon_boundary r_type="cDNA" r_start="612" r_stop="751" r_length="140" r_score="0.993"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="17531" i_stop="17607" i_length="77">
            <donor d_prob="0.999" d_score="0.98"/>
            <acceptor a_prob="0.948" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="17608" g_stop="17700" g_length="93"/>
          <reference_exon_boundary r_type="cDNA" r_start="752" r_stop="845" r_length="94" r_score="0.946"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0236E02.1" gen_strand="+" ref_id="SGN-E726717" ref_strand="+">
        <total_alignment_score>0.992</total_alignment_score>
        <cumulative_length_of_scored_exons>844</cumulative_length_of_scored_exons>
        <coverage percentage="0.999" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0236E02.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E726717" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="14944" e_stop="15182"/>
          <exon e_start="16380" e_stop="16441"/>
          <exon e_start="16814" e_stop="16957"/>
          <exon e_start="17056" e_stop="17104"/>
          <exon e_start="17189" e_stop="17305"/>
          <exon e_start="17391" e_stop="17530"/>
          <exon e_start="17608" e_stop="17700"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTTAGTAACAAAGTAGTATAAAGGGCAAGCAAAAGCTAAAGGAAGCTCATTGAGAAATGTCAACTGCTTCCATTAACAATTGCCTTACTCTCTCCCCTGCTCAAGCTTCCCTTAAGAAACCTACTCGTCCCGTTGCCTTCGCAAGGCTTGGCAACTCTTCTTCTTCTTCTTCTATTCCAAGTCTCATCAGAAACGAGCCCGTCTTTGCTGCCCCTACTCCCATCATCAACCCCATTGTGGTACGAATTTTTAACTTACATCACTGTATTTTAATCTGTTATAACAAGTTATTTATATTTGACGTTACTTAATTTATTTTTTAAGCAAGACATTTTTTTTGTCTTATCGTATTTTTTGTAACGACTTGTGTCCATGCATGCTAGTTCACGTGAAAATTCAATATTGGCATAGTTCTAAACTTTAGTTTCTAACCACCTTTATTATTGGTATTGTTATTTTTGGCCATGAATCTCCTGAAGTTAGGTGAATTGATCATGTCGCTCTAAATTGTACACGTCTATTGCGTGTACTCAATGACATATAATATATTATTGCAATCCTAAAATAAGTGTTATTTTAATTTATTTTGAACTCATTAAAATAAATATGATATTTTACTGAGTTACTTATATTTATTACTTTGATTTTTTTGAGTACTAATTTGTATTTTGAAACTTTTAAGATGACGAGAGGGTGGAAATAACAAATTAAATTTGAAAATGAACCAAAATAGAGGTGGCAATTAGGTAGAGGTTCTCGCAAAATGAATATTAAATATGTAGGGCCGTATTGTGAATTATGTGGATAATGTTTTTGCTTTCTATTTTTTTTTAAAAAAAATAATTATTACTTACAATAATCCAACGGGTATCCTCGTATGTGCCCATCCTACAAGTGATAAAATGATAAGTACCAGTCTACCATCAAGTTTGTAGGATAGAAACTATTTAGTATACATTGTTTTTGTCTTAATTTCTAGTTTTGGTATCCATCTAAATCGATACTCCATTATGTTAATTATTTCATTTCTTTCTTTTGACATCTACATCACTTTTTAATGTGGTTACCACTTGCTATAATCATACTTCACTTAGCATTTTATTTGAACTTAGTGAAAGTGAAATTTTTCCTAATAATTGGTCTAAAAATTGAAGAAGATTAAAGCCAAGAAATTGAGTTCTTCCTTCTTTCTTCCAACTTTGAAAGTACCGATAGATACTATCATATAAAAAGAAGAGGTGGTCTGACTAACTCAATGAAGTGAATTTTTCAAAAACATGCTCAGAAAAATGAGAAAAATGGAGTTTTTGAAAAGAAAAATTAACAGATATTTAAAGATAAATTTTTGAAATTTGGTTCAAAATTTATGGTCAAATATTAACTTATATTTATATATATACCTCTTCTAAAATGCTAATGAGAATTAGAATTTGCAGAGAGAAGAAATGGCAAAAGAATCCTACGATCAAGCCATTGCTGCACTCGAGAAACTCCTCAGGTTTGTACTCTCTCTACGACTCTACCTTCTAAATCACACTACTTTTTTCTCGATCAAGTGGGGCCCAAAAAATATACATACACCCACACATACGTAGACAAAAAAAATGTTAAAATTTGCGAATATGCAGAGAAAACATAATATAATCATGCAATGTTTACTCGTAAAATTCAATTTCCCGGCAATGAACATGTTACTTGGTTTCGAGTTCTCCAGATCTGCATTAATTTTACCATTCTATCATCATTTTTTTACCCCATATCTGCATTAATTTATCATGGTAATGGTGCTCAAACCACAAATCTTTTTTTTTTCTACCTGAAATATTGCTTCAATAATAATAATGGTCTAAATTATTTTCTGCAATTACAGCGAGAAAGCAGAACTTGGACCAGTTGCTGCAGCAAGAGTTGACCAGATCACTGCTGAATTGAAATCAGCAGACGGCGGCAAGGCATTCGACCCTGTTGAGCACATGAAAGCTGGCTTTATTCATTTCAAGACTGAGAAATATGAGTAAGCAAATTCATTCAAATTAAAATTTCTGCATATTTGATGTTGTAACATTATTAGTGTCTGATAATTTTTCCTGTTTTCTATTTATGTACCAACAGCACAAACCCAGCCTTATATGGTGAGCTAGCAAAGGGCCAGAGCCCTAAGGTACAAATTCCTTGTTAATTTGTTGTCTAATTTTATGATTTGTACGGTTTCTGATGAGTTCTATTGTCCTAAATGTGTAAACAGTTCATGGTTTTCGCGTGCTCTGACTCACGAGTCTGCCCATCCCATGTCCTCAACTTCCAACCTGGTGAGGCATTCATGGTTCGTAACATCGCCAACATGGTCCCTGCTTATGACAAGGTCAGTTACAAATCGATCAACTAGTCGATTATTTCGCTCTGGAATTGTGTTTTTTAAAAATAAAGATGGAATTGAATTTTTACAGGTCAGGTACTCTGGAGTAGGAGCAGCCATTGAATACGCCGTTCTTCATCTTAAGGTGGAGAACATCGTTGTCATTGGCCACAGTGCTTGTGGAGGTATCAAAGGTCTCATGTCACTACCTGAAGATGGTAGTGAATCAACGTACGTCACTCTATAAATCTATTCATTCAAAACACTTATCCTTAACAGATGATTGATTAATAATCTAATATACGCAGTGCCTTTATTGAGGATTGGGTAAAAATTTGTTTACCTGCCAAGGCAAAGGTTCTGGCCGATCACGGAGGGAAAGAA-TTTGCACATCAATGCAC</genome_strand>
        <mrna_strand>GTTAGTAACAAAGTAGTATAAAGGGCAAGCAAAAGCTAAAGGAAGCTCATTGAGAAATGTCAACTGCTTCCATTAACAATTGCCTTACTCTCTCCCCTGCTCAAGCTTCCCTTAAGAAACCTACTCGTCCCGTTGCCTTCGCAAGGCTTGGCAACTCTTCTTCTTCTTCTTCTATTCCAAGTCTCATCAGAAACGAGCCCGTCTTTGCTGCCCCTACTCCCATCATCAACCCCATTGTG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGAGAAGAAATGGCAAAAGAATCCTACGATCAAGCCATTGCTGCACTCGAGAAACTCCTCAG....................................................................................................................................................................................................................................................................................................................................................................................CGAGAAAGCAGAACTTGGACCAGTTGCTGCAGCAAGAGTTGACCAGATCACTGCTGAATTGAAATCAGCAGACGGCGGCAAGGCATTCGACCCTGTTGAGCACATGAAAGCTGGCTTTATTCATTTCAAGACTGAGAAATATGA..................................................................................................CACAAACCCAGCCTTATATGGTGAGCTAGCAAAGGGCCAGAGCCCTAAG....................................................................................TTCATGGTTTTCGCGTGCTCTGACTCACGAGTCTGCCCATCCCATGTCCTCAACTTCCAACCTGGTGAGGCATTCATGGTTCGTAACATCGCCAACATGGTCCCTGCTTATGACAAG.....................................................................................GTCAGGTACTCTGGAGTAGGAGCAGCCATTGAATACGCCGTTCTTCATCTTAAGGTGGAGAACATCGTTGTCATTGGCCACAGTGCTTGTGGAGGTATCANAGGTCTCATGTCACTACCTGAAGATGGTAGTGAATCAAC.............................................................................TGCCTTTATTGAGGATTGGGTAAAAATTTGTTTACCTGCCCAAGCAAAGGTTCTGGCCGATCACGGAGGGAAAAAATTTTGCACATCAATGCAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0236E02-u8qcS/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E366176" ref_strand="+" ref_description="SGN-E366176 [cLPT-1-E15]">
      <seq>gttagttacaaagtagtataaagggaaagcaaaagctaaaggaagctcattgagaaatgtcaactgcttccattaacaattgccttactctctcccctgctcaagcttcccttaagaaacctactcgtcccgttgccttcgcaaggcttggcaactcttcttcttcttcttcttcttctattccaagtctcatcagaaacgagcccgtctttgctgcccctactcccatcatcaaccccattgtgagagaagaaatggcaaaagaatcctacgatcaggccgttgctgcactcgagaaactcctcagcgagaaagcagaacttggaccagttgctgcagcaagagttgaccagatcactgctgaattgaaatcagcagatggcggcaaggcattcgaccctgttgagcacatgaaagctggctttattcatttcaagactgagaaatatgatacaaacccagccttata</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0236E02-u8qcS/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0236E02.1" temp_strand="+" temp_description="C02HBa0236E02.1  AC215430.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0236E02 sequenced_by:kribb upload_account_name:korea">
        <position start="14644" stop="17260"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="14944" g_stop="15182" g_length="239"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="245" r_length="245" r_score="0.941"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="15183" i_stop="16379" i_length="1197">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.971" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="16380" g_stop="16441" g_length="62"/>
          <reference_exon_boundary r_type="cDNA" r_start="246" r_stop="307" r_length="62" r_score="0.968"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="16442" i_stop="16813" i_length="372">
            <donor d_prob="0.999" d_score="0.96"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="16814" g_stop="16957" g_length="144"/>
          <reference_exon_boundary r_type="cDNA" r_start="308" r_stop="451" r_length="144" r_score="0.993"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="16958" i_stop="17055" i_length="98">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="17056" g_stop="17073" g_length="18"/>
          <reference_exon_boundary r_type="cDNA" r_start="452" r_stop="469" r_length="18" r_score="0.944"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0236E02.1" gen_strand="+" ref_id="SGN-E366176" ref_strand="+">
        <total_alignment_score>0.962</total_alignment_score>
        <cumulative_length_of_scored_exons>463</cumulative_length_of_scored_exons>
        <coverage percentage="0.987" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0236E02.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E366176" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="14944" e_stop="15182"/>
          <exon e_start="16380" e_stop="16441"/>
          <exon e_start="16814" e_stop="16957"/>
          <exon e_start="17056" e_stop="17073"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTTAGTAACAAAGTAGTATAAAGGGCAAGCAAAAGCTAAAGGAAGCTCATTGAGAAATGTCAACTGCTTCCATTAACAATTGCCTTACTCTCTCCCCTGCTCAAGCTTCCCTTAAGAAACCTACTCGTCCCGTTGCCTTCGCAAGGCTTGGCAA-----C-TCTTCTTCTTCTTCTTCTATTCCAAGTCTCATCAGAAACGAGCCCGTCTTTGCTGCCCCTACTCCCATCATCAACCCCATTGTGGTACGAATTTTTAACTTACATCACTGTATTTTAATCTGTTATAACAAGTTATTTATATTTGACGTTACTTAATTTATTTTTTAAGCAAGACATTTTTTTTGTCTTATCGTATTTTTTGTAACGACTTGTGTCCATGCATGCTAGTTCACGTGAAAATTCAATATTGGCATAGTTCTAAACTTTAGTTTCTAACCACCTTTATTATTGGTATTGTTATTTTTGGCCATGAATCTCCTGAAGTTAGGTGAATTGATCATGTCGCTCTAAATTGTACACGTCTATTGCGTGTACTCAATGACATATAATATATTATTGCAATCCTAAAATAAGTGTTATTTTAATTTATTTTGAACTCATTAAAATAAATATGATATTTTACTGAGTTACTTATATTTATTACTTTGATTTTTTTGAGTACTAATTTGTATTTTGAAACTTTTAAGATGACGAGAGGGTGGAAATAACAAATTAAATTTGAAAATGAACCAAAATAGAGGTGGCAATTAGGTAGAGGTTCTCGCAAAATGAATATTAAATATGTAGGGCCGTATTGTGAATTATGTGGATAATGTTTTTGCTTTCTATTTTTTTTTAAAAAAAATAATTATTACTTACAATAATCCAACGGGTATCCTCGTATGTGCCCATCCTACAAGTGATAAAATGATAAGTACCAGTCTACCATCAAGTTTGTAGGATAGAAACTATTTAGTATACATTGTTTTTGTCTTAATTTCTAGTTTTGGTATCCATCTAAATCGATACTCCATTATGTTAATTATTTCATTTCTTTCTTTTGACATCTACATCACTTTTTAATGTGGTTACCACTTGCTATAATCATACTTCACTTAGCATTTTATTTGAACTTAGTGAAAGTGAAATTTTTCCTAATAATTGGTCTAAAAATTGAAGAAGATTAAAGCCAAGAAATTGAGTTCTTCCTTCTTTCTTCCAACTTTGAAAGTACCGATAGATACTATCATATAAAAAGAAGAGGTGGTCTGACTAACTCAATGAAGTGAATTTTTCAAAAACATGCTCAGAAAAATGAGAAAAATGGAGTTTTTGAAAAGAAAAATTAACAGATATTTAAAGATAAATTTTTGAAATTTGGTTCAAAATTTATGGTCAAATATTAACTTATATTTATATATATACCTCTTCTAAAATGCTAATGAGAATTAGAATTTGCAGAGAGAAGAAATGGCAAAAGAATCCTACGATCAAGCCATTGCTGCACTCGAGAAACTCCTCAGGTTTGTACTCTCTCTACGACTCTACCTTCTAAATCACACTACTTTTTTCTCGATCAAGTGGGGCCCAAAAAATATACATACACCCACACATACGTAGACAAAAAAAATGTTAAAATTTGCGAATATGCAGAGAAAACATAATATAATCATGCAATGTTTACTCGTAAAATTCAATTTCCCGGCAATGAACATGTTACTTGGTTTCGAGTTCTCCAGATCTGCATTAATTTTACCATTCTATCATCATTTTTTTACCCCATATCTGCATTAATTTATCATGGTAATGGTGCTCAAACCACAAATCTTTTTTTTTTCTACCTGAAATATTGCTTCAATAATAATAATGGTCTAAATTATTTTCTGCAATTACAGCGAGAAAGCAGAACTTGGACCAGTTGCTGCAGCAAGAGTTGACCAGATCACTGCTGAATTGAAATCAGCAGACGGCGGCAAGGCATTCGACCCTGTTGAGCACATGAAAGCTGGCTTTATTCATTTCAAGACTGAGAAATATGAGTAAGCAAATTCATTCAAATTAAAATTTCTGCATATTTGATGTTGTAACATTATTAGTGTCTGATAATTTTTCCTGTTTTCTATTTATGTACCAACAGCACAAACCCAGCCTTATA</genome_strand>
        <mrna_strand>GTTAGTTACAAAGTAGTATAAAGGGAAAGCAAAAGCTAAAGGAAGCTCATTGAGAAATGTCAACTGCTTCCATTAACAATTGCCTTACTCTCTCCCCTGCTCAAGCTTCCCTTAAGAAACCTACTCGTCCCGTTGCCTTCGCAAGGCTTGGCAACTCTTCTTCTTCTTCTTCTTCTTCTATTCCAAGTCTCATCAGAAACGAGCCCGTCTTTGCTGCCCCTACTCCCATCATCAACCCCATTGTG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGAGAAGAAATGGCAAAAGAATCCTACGATCAGGCCGTTGCTGCACTCGAGAAACTCCTCAG....................................................................................................................................................................................................................................................................................................................................................................................CGAGAAAGCAGAACTTGGACCAGTTGCTGCAGCAAGAGTTGACCAGATCACTGCTGAATTGAAATCAGCAGATGGCGGCAAGGCATTCGACCCTGTTGAGCACATGAAAGCTGGCTTTATTCATTTCAAGACTGAGAAATATGA..................................................................................................TACAAACCCAGCCTTATA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0236E02-u8qcS/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E471815" ref_strand="+" ref_description="SGN-E471815 [cSTB-25-D10]">
      <seq>gtgagtaacaaagtaatataaagggcaagcaaaagctaaaggaagctcattgagaaatgtcaactgcttccattaacaattgccttactatctcccctgctcaagcttcccttaagaaacctactcgtcccgttgccttcgcaaggcttggcaactcttcttctccttctattccaagtctcatcagaaacgagcccgtctttgctgctcctactcgcatcatcaaccccattgtgagagaagaaatggcaaaagaatcctacgatcaggccattgctgcactcgagaaactcctcagcgagaaagcagaacttggaccagttgctgcagcaagagttgaccagattactgctgaattgaaatcagcagatggaagcaaggccttcgaccctgttgagcacatgaaagctggctttattcatttcaagactgagaaatatgatacaaacc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0236E02-u8qcS/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0236E02.1" temp_strand="+" temp_description="C02HBa0236E02.1  AC215430.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0236E02 sequenced_by:kribb upload_account_name:korea">
        <position start="14644" stop="17260"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="14944" g_stop="15182" g_length="239"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="236" r_length="236" r_score="0.967"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="15183" i_stop="16379" i_length="1197">
            <donor d_prob="1.000" d_score="0.96"/>
            <acceptor a_prob="0.971" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="16380" g_stop="16441" g_length="62"/>
          <reference_exon_boundary r_type="cDNA" r_start="237" r_stop="298" r_length="62" r_score="0.984"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="16442" i_stop="16813" i_length="372">
            <donor d_prob="0.999" d_score="0.98"/>
            <acceptor a_prob="1.000" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="16814" g_stop="16957" g_length="144"/>
          <reference_exon_boundary r_type="cDNA" r_start="299" r_stop="442" r_length="144" r_score="0.965"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="16958" i_stop="17055" i_length="98">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="17056" g_stop="17063" g_length="8"/>
          <reference_exon_boundary r_type="cDNA" r_start="443" r_stop="450" r_length="8" r_score="0.875"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0236E02.1" gen_strand="+" ref_id="SGN-E471815" ref_strand="+">
        <total_alignment_score>0.969</total_alignment_score>
        <cumulative_length_of_scored_exons>453</cumulative_length_of_scored_exons>
        <coverage percentage="1.007" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0236E02.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E471815" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="14944" e_stop="15182"/>
          <exon e_start="16380" e_stop="16441"/>
          <exon e_start="16814" e_stop="16957"/>
          <exon e_start="17056" e_stop="17063"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTTAGTAACAAAGTAGTATAAAGGGCAAGCAAAAGCTAAAGGAAGCTCATTGAGAAATGTCAACTGCTTCCATTAACAATTGCCTTACTCTCTCCCCTGCTCAAGCTTCCCTTAAGAAACCTACTCGTCCCGTTGCCTTCGCAAGGCTTGGCAACTCTTCTTCTTCTTCTTCTATTCCAAGTCTCATCAGAAACGAGCCCGTCTTTGCTGCCCCTACTCCCATCATCAACCCCATTGTGGTACGAATTTTTAACTTACATCACTGTATTTTAATCTGTTATAACAAGTTATTTATATTTGACGTTACTTAATTTATTTTTTAAGCAAGACATTTTTTTTGTCTTATCGTATTTTTTGTAACGACTTGTGTCCATGCATGCTAGTTCACGTGAAAATTCAATATTGGCATAGTTCTAAACTTTAGTTTCTAACCACCTTTATTATTGGTATTGTTATTTTTGGCCATGAATCTCCTGAAGTTAGGTGAATTGATCATGTCGCTCTAAATTGTACACGTCTATTGCGTGTACTCAATGACATATAATATATTATTGCAATCCTAAAATAAGTGTTATTTTAATTTATTTTGAACTCATTAAAATAAATATGATATTTTACTGAGTTACTTATATTTATTACTTTGATTTTTTTGAGTACTAATTTGTATTTTGAAACTTTTAAGATGACGAGAGGGTGGAAATAACAAATTAAATTTGAAAATGAACCAAAATAGAGGTGGCAATTAGGTAGAGGTTCTCGCAAAATGAATATTAAATATGTAGGGCCGTATTGTGAATTATGTGGATAATGTTTTTGCTTTCTATTTTTTTTTAAAAAAAATAATTATTACTTACAATAATCCAACGGGTATCCTCGTATGTGCCCATCCTACAAGTGATAAAATGATAAGTACCAGTCTACCATCAAGTTTGTAGGATAGAAACTATTTAGTATACATTGTTTTTGTCTTAATTTCTAGTTTTGGTATCCATCTAAATCGATACTCCATTATGTTAATTATTTCATTTCTTTCTTTTGACATCTACATCACTTTTTAATGTGGTTACCACTTGCTATAATCATACTTCACTTAGCATTTTATTTGAACTTAGTGAAAGTGAAATTTTTCCTAATAATTGGTCTAAAAATTGAAGAAGATTAAAGCCAAGAAATTGAGTTCTTCCTTCTTTCTTCCAACTTTGAAAGTACCGATAGATACTATCATATAAAAAGAAGAGGTGGTCTGACTAACTCAATGAAGTGAATTTTTCAAAAACATGCTCAGAAAAATGAGAAAAATGGAGTTTTTGAAAAGAAAAATTAACAGATATTTAAAGATAAATTTTTGAAATTTGGTTCAAAATTTATGGTCAAATATTAACTTATATTTATATATATACCTCTTCTAAAATGCTAATGAGAATTAGAATTTGCAGAGAGAAGAAATGGCAAAAGAATCCTACGATCAAGCCATTGCTGCACTCGAGAAACTCCTCAGGTTTGTACTCTCTCTACGACTCTACCTTCTAAATCACACTACTTTTTTCTCGATCAAGTGGGGCCCAAAAAATATACATACACCCACACATACGTAGACAAAAAAAATGTTAAAATTTGCGAATATGCAGAGAAAACATAATATAATCATGCAATGTTTACTCGTAAAATTCAATTTCCCGGCAATGAACATGTTACTTGGTTTCGAGTTCTCCAGATCTGCATTAATTTTACCATTCTATCATCATTTTTTTACCCCATATCTGCATTAATTTATCATGGTAATGGTGCTCAAACCACAAATCTTTTTTTTTTCTACCTGAAATATTGCTTCAATAATAATAATGGTCTAAATTATTTTCTGCAATTACAGCGAGAAAGCAGAACTTGGACCAGTTGCTGCAGCAAGAGTTGACCAGATCACTGCTGAATTGAAATCAGCAGACGGCGGCAAGGCATTCGACCCTGTTGAGCACATGAAAGCTGGCTTTATTCATTTCAAGACTGAGAAATATGAGTAAGCAAATTCATTCAAATTAAAATTTCTGCATATTTGATGTTGTAACATTATTAGTGTCTGATAATTTTTCCTGTTTTCTATTTATGTACCAACAGCACAAACC</genome_strand>
        <mrna_strand>GTGAGTAACAAAGTAATATAAAGGGCAAGCAAAAGCTAAAGGAAGCTCATTGAGAAATGTCAACTGCTTCCATTAACAATTGCCTTACTATCTCCCCTGCTCAAGCTTCCCTTAAGAAACCTACTCGTCCCGTTGCCTTCGCAAGGCTTGGCAACTCTTCTTC-TC--CTTCTATTCCAAGTCTCATCAGAAACGAGCCCGTCTTTGCTGCTCCTACTCGCATCATCAACCCCATTGTG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGAGAAGAAATGGCAAAAGAATCCTACGATCAGGCCATTGCTGCACTCGAGAAACTCCTCAG....................................................................................................................................................................................................................................................................................................................................................................................CGAGAAAGCAGAACTTGGACCAGTTGCTGCAGCAAGAGTTGACCAGATTACTGCTGAATTGAAATCAGCAGATGGAAGCAAGGCCTTCGACCCTGTTGAGCACATGAAAGCTGGCTTTATTCATTTCAAGACTGAGAAATATGA..................................................................................................TACAAACC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0236E02-u8qcS/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E470418" ref_strand="+" ref_description="SGN-E470418 [cSTB-18-M3]">
      <seq>gtgagtaacaaagtagtataaaggtcaagcaaaagctaaaggaagctcattgagacatgtcaactgcttccattaacaattgccttactatctcccctgctcaagcttcccttaagaaacctactcgtcccgttgccttcgcaaggcttggcaactcttcttcttcttctattccaagtctcatcagaaacgagcccgtcttcgctgcccctactcccatcatcaaccccattgtgagagaagaaatggcaaaagaatcatacgatcaggccattgctgcactcgagaaactcctcagcgagaaggcagaacttggaccagttgctgcagcaagagttgaccagattactgctgaattgaaatcagcagatggcagcaaagccttcg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0236E02-u8qcS/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0236E02.1" temp_strand="+" temp_description="C02HBa0236E02.1  AC215430.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0236E02 sequenced_by:kribb upload_account_name:korea">
        <position start="14644" stop="17202"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="14944" g_stop="15182" g_length="239"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="236" r_length="236" r_score="0.967"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="15183" i_stop="16379" i_length="1197">
            <donor d_prob="1.000" d_score="0.98"/>
            <acceptor a_prob="0.971" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="16380" g_stop="16441" g_length="62"/>
          <reference_exon_boundary r_type="cDNA" r_start="237" r_stop="298" r_length="62" r_score="0.968"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="16442" i_stop="16813" i_length="372">
            <donor d_prob="0.999" d_score="0.96"/>
            <acceptor a_prob="1.000" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="16814" g_stop="16902" g_length="89"/>
          <reference_exon_boundary r_type="cDNA" r_start="299" r_stop="387" r_length="89" r_score="0.933"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0236E02.1" gen_strand="+" ref_id="SGN-E470418" ref_strand="+">
        <total_alignment_score>0.959</total_alignment_score>
        <cumulative_length_of_scored_exons>390</cumulative_length_of_scored_exons>
        <coverage percentage="1.008" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0236E02.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E470418" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="14944" e_stop="15182"/>
          <exon e_start="16380" e_stop="16441"/>
          <exon e_start="16814" e_stop="16902"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTTAGTAACAAAGTAGTATAAAGGGCAAGCAAAAGCTAAAGGAAGCTCATTGAGAAATGTCAACTGCTTCCATTAACAATTGCCTTACTCTCTCCCCTGCTCAAGCTTCCCTTAAGAAACCTACTCGTCCCGTTGCCTTCGCAAGGCTTGGCAACTCTTCTTCTTCTTCTTCTATTCCAAGTCTCATCAGAAACGAGCCCGTCTTTGCTGCCCCTACTCCCATCATCAACCCCATTGTGGTACGAATTTTTAACTTACATCACTGTATTTTAATCTGTTATAACAAGTTATTTATATTTGACGTTACTTAATTTATTTTTTAAGCAAGACATTTTTTTTGTCTTATCGTATTTTTTGTAACGACTTGTGTCCATGCATGCTAGTTCACGTGAAAATTCAATATTGGCATAGTTCTAAACTTTAGTTTCTAACCACCTTTATTATTGGTATTGTTATTTTTGGCCATGAATCTCCTGAAGTTAGGTGAATTGATCATGTCGCTCTAAATTGTACACGTCTATTGCGTGTACTCAATGACATATAATATATTATTGCAATCCTAAAATAAGTGTTATTTTAATTTATTTTGAACTCATTAAAATAAATATGATATTTTACTGAGTTACTTATATTTATTACTTTGATTTTTTTGAGTACTAATTTGTATTTTGAAACTTTTAAGATGACGAGAGGGTGGAAATAACAAATTAAATTTGAAAATGAACCAAAATAGAGGTGGCAATTAGGTAGAGGTTCTCGCAAAATGAATATTAAATATGTAGGGCCGTATTGTGAATTATGTGGATAATGTTTTTGCTTTCTATTTTTTTTTAAAAAAAATAATTATTACTTACAATAATCCAACGGGTATCCTCGTATGTGCCCATCCTACAAGTGATAAAATGATAAGTACCAGTCTACCATCAAGTTTGTAGGATAGAAACTATTTAGTATACATTGTTTTTGTCTTAATTTCTAGTTTTGGTATCCATCTAAATCGATACTCCATTATGTTAATTATTTCATTTCTTTCTTTTGACATCTACATCACTTTTTAATGTGGTTACCACTTGCTATAATCATACTTCACTTAGCATTTTATTTGAACTTAGTGAAAGTGAAATTTTTCCTAATAATTGGTCTAAAAATTGAAGAAGATTAAAGCCAAGAAATTGAGTTCTTCCTTCTTTCTTCCAACTTTGAAAGTACCGATAGATACTATCATATAAAAAGAAGAGGTGGTCTGACTAACTCAATGAAGTGAATTTTTCAAAAACATGCTCAGAAAAATGAGAAAAATGGAGTTTTTGAAAAGAAAAATTAACAGATATTTAAAGATAAATTTTTGAAATTTGGTTCAAAATTTATGGTCAAATATTAACTTATATTTATATATATACCTCTTCTAAAATGCTAATGAGAATTAGAATTTGCAGAGAGAAGAAATGGCAAAAGAATCCTACGATCAAGCCATTGCTGCACTCGAGAAACTCCTCAGGTTTGTACTCTCTCTACGACTCTACCTTCTAAATCACACTACTTTTTTCTCGATCAAGTGGGGCCCAAAAAATATACATACACCCACACATACGTAGACAAAAAAAATGTTAAAATTTGCGAATATGCAGAGAAAACATAATATAATCATGCAATGTTTACTCGTAAAATTCAATTTCCCGGCAATGAACATGTTACTTGGTTTCGAGTTCTCCAGATCTGCATTAATTTTACCATTCTATCATCATTTTTTTACCCCATATCTGCATTAATTTATCATGGTAATGGTGCTCAAACCACAAATCTTTTTTTTTTCTACCTGAAATATTGCTTCAATAATAATAATGGTCTAAATTATTTTCTGCAATTACAGCGAGAAAGCAGAACTTGGACCAGTTGCTGCAGCAAGAGTTGACCAGATCACTGCTGAATTGAAATCAGCAGACGGCGGCAAGGCATTCG</genome_strand>
        <mrna_strand>GTGAGTAACAAAGTAGTATAAAGGTCAAGCAAAAGCTAAAGGAAGCTCATTGAGACATGTCAACTGCTTCCATTAACAATTGCCTTACTATCTCCCCTGCTCAAGCTTCCCTTAAGAAACCTACTCGTCCCGTTGCCTTCGCAAGGCTTGGCAA--C-TCTTCTTCTTCTTCTATTCCAAGTCTCATCAGAAACGAGCCCGTCTTCGCTGCCCCTACTCCCATCATCAACCCCATTGTG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGAGAAGAAATGGCAAAAGAATCATACGATCAGGCCATTGCTGCACTCGAGAAACTCCTCAG....................................................................................................................................................................................................................................................................................................................................................................................CGAGAAGGCAGAACTTGGACCAGTTGCTGCAGCAAGAGTTGACCAGATTACTGCTGAATTGAAATCAGCAGATGGCAGCAAAGCCTTCG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0236E02-u8qcS/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E725563" ref_strand="+" ref_description="SGN-E725563 [LA04AC08]">
      <seq>gttagtaacaaagtagtataaagggcaagcaaaagctaaaggaagctcattgagaaatgtcaactgcttccattaacaattgccttactctctcccctgctcaagcttcccttaagaaacctactcgtcccgttgccttcgcaaggcttggcaactcttcttcttcttcttctattccaagtctcatcagaaacgagcccgtctttgctgcccctactcccatcatcaaccccattgtgagagaagaaatggcaaaagaatcctacgatcaagccattgctgc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0236E02-u8qcS/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0236E02.1" temp_strand="+" temp_description="C02HBa0236E02.1  AC215430.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0236E02 sequenced_by:kribb upload_account_name:korea">
        <position start="14644" stop="16723"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="14944" g_stop="15182" g_length="239"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="239" r_length="239" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="15183" i_stop="16379" i_length="1197">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.971" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="16380" g_stop="16423" g_length="44"/>
          <reference_exon_boundary r_type="cDNA" r_start="240" r_stop="283" r_length="44" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0236E02.1" gen_strand="+" ref_id="SGN-E725563" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>283</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0236E02.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E725563" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="14944" e_stop="15182"/>
          <exon e_start="16380" e_stop="16423"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTTAGTAACAAAGTAGTATAAAGGGCAAGCAAAAGCTAAAGGAAGCTCATTGAGAAATGTCAACTGCTTCCATTAACAATTGCCTTACTCTCTCCCCTGCTCAAGCTTCCCTTAAGAAACCTACTCGTCCCGTTGCCTTCGCAAGGCTTGGCAACTCTTCTTCTTCTTCTTCTATTCCAAGTCTCATCAGAAACGAGCCCGTCTTTGCTGCCCCTACTCCCATCATCAACCCCATTGTGGTACGAATTTTTAACTTACATCACTGTATTTTAATCTGTTATAACAAGTTATTTATATTTGACGTTACTTAATTTATTTTTTAAGCAAGACATTTTTTTTGTCTTATCGTATTTTTTGTAACGACTTGTGTCCATGCATGCTAGTTCACGTGAAAATTCAATATTGGCATAGTTCTAAACTTTAGTTTCTAACCACCTTTATTATTGGTATTGTTATTTTTGGCCATGAATCTCCTGAAGTTAGGTGAATTGATCATGTCGCTCTAAATTGTACACGTCTATTGCGTGTACTCAATGACATATAATATATTATTGCAATCCTAAAATAAGTGTTATTTTAATTTATTTTGAACTCATTAAAATAAATATGATATTTTACTGAGTTACTTATATTTATTACTTTGATTTTTTTGAGTACTAATTTGTATTTTGAAACTTTTAAGATGACGAGAGGGTGGAAATAACAAATTAAATTTGAAAATGAACCAAAATAGAGGTGGCAATTAGGTAGAGGTTCTCGCAAAATGAATATTAAATATGTAGGGCCGTATTGTGAATTATGTGGATAATGTTTTTGCTTTCTATTTTTTTTTAAAAAAAATAATTATTACTTACAATAATCCAACGGGTATCCTCGTATGTGCCCATCCTACAAGTGATAAAATGATAAGTACCAGTCTACCATCAAGTTTGTAGGATAGAAACTATTTAGTATACATTGTTTTTGTCTTAATTTCTAGTTTTGGTATCCATCTAAATCGATACTCCATTATGTTAATTATTTCATTTCTTTCTTTTGACATCTACATCACTTTTTAATGTGGTTACCACTTGCTATAATCATACTTCACTTAGCATTTTATTTGAACTTAGTGAAAGTGAAATTTTTCCTAATAATTGGTCTAAAAATTGAAGAAGATTAAAGCCAAGAAATTGAGTTCTTCCTTCTTTCTTCCAACTTTGAAAGTACCGATAGATACTATCATATAAAAAGAAGAGGTGGTCTGACTAACTCAATGAAGTGAATTTTTCAAAAACATGCTCAGAAAAATGAGAAAAATGGAGTTTTTGAAAAGAAAAATTAACAGATATTTAAAGATAAATTTTTGAAATTTGGTTCAAAATTTATGGTCAAATATTAACTTATATTTATATATATACCTCTTCTAAAATGCTAATGAGAATTAGAATTTGCAGAGAGAAGAAATGGCAAAAGAATCCTACGATCAAGCCATTGCTGC</genome_strand>
        <mrna_strand>GTTAGTAACAAAGTAGTATAAAGGGCAAGCAAAAGCTAAAGGAAGCTCATTGAGAAATGTCAACTGCTTCCATTAACAATTGCCTTACTCTCTCCCCTGCTCAAGCTTCCCTTAAGAAACCTACTCGTCCCGTTGCCTTCGCAAGGCTTGGCAACTCTTCTTCTTCTTCTTCTATTCCAAGTCTCATCAGAAACGAGCCCGTCTTTGCTGCCCCTACTCCCATCATCAACCCCATTGTG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGAGAAGAAATGGCAAAAGAATCCTACGATCAAGCCATTGCTGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0236E02-u8qcS/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E366257" ref_strand="+" ref_description="SGN-E366257 [cLPT-1-B23]">
      <seq>ttagtaacaaagtagtataaagggaaagcaaaagctaaaggaagctcattgagaaatgtcaactgcttccattaacaattgccttactctctcccctgctcaagcttcccttaagaaacctactcgtcccgttgccttcgcaaggcttggcaactcttcttcttcttcttcttcttctattccaagtctcatcagaaacgagcccgtctttgctgcccctactcccatcatcaaccccattgtgagagaagaaatggcaaaagaatcctacgatcaggccgttgctgcactcgagaaactcctcagcgagaaagcagaacttggaccagttgctgcagcaagagttgaccagatcactgctgaattgaaatcagcagatggcggcaaggcattcgaccctgttgagcacatgaaagctggctttattcatttcaagactgagaaatatgatacaaacccagccttatatggtgaactagcaaagggccagagcccaaagttcatggttttcgcgtgctctgactcacgagtgtgcccatcccatgtcctcaacttccaacctggtgaggcattcatggttcgtaacatcgccaacatggtccctgcttatgac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0236E02-u8qcS/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0236E02.1" temp_strand="+" temp_description="C02HBa0236E02.1  AC215430.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0236E02 sequenced_by:kribb upload_account_name:korea">
        <position start="14645" stop="17602"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="14945" g_stop="15182" g_length="238"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="244" r_length="244" r_score="0.945"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="15183" i_stop="16379" i_length="1197">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.971" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="16380" g_stop="16441" g_length="62"/>
          <reference_exon_boundary r_type="cDNA" r_start="245" r_stop="306" r_length="62" r_score="0.968"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="16442" i_stop="16813" i_length="372">
            <donor d_prob="0.999" d_score="0.96"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="16814" g_stop="16957" g_length="144"/>
          <reference_exon_boundary r_type="cDNA" r_start="307" r_stop="450" r_length="144" r_score="0.993"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="16958" i_stop="17055" i_length="98">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="17056" g_stop="17104" g_length="49"/>
          <reference_exon_boundary r_type="cDNA" r_start="451" r_stop="499" r_length="49" r_score="0.939"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="17105" i_stop="17188" i_length="84">
            <donor d_prob="1.000" d_score="0.94"/>
            <acceptor a_prob="0.961" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="17189" g_stop="17302" g_length="114"/>
          <reference_exon_boundary r_type="cDNA" r_start="500" r_stop="613" r_length="114" r_score="0.991"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0236E02.1" gen_strand="+" ref_id="SGN-E366257" ref_strand="+">
        <total_alignment_score>0.970</total_alignment_score>
        <cumulative_length_of_scored_exons>607</cumulative_length_of_scored_exons>
        <coverage percentage="0.990" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0236E02.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E366257" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="14945" e_stop="15182"/>
          <exon e_start="16380" e_stop="16441"/>
          <exon e_start="16814" e_stop="16957"/>
          <exon e_start="17056" e_stop="17104"/>
          <exon e_start="17189" e_stop="17302"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTAGTAACAAAGTAGTATAAAGGGCAAGCAAAAGCTAAAGGAAGCTCATTGAGAAATGTCAACTGCTTCCATTAACAATTGCCTTACTCTCTCCCCTGCTCAAGCTTCCCTTAAGAAACCTACTCGTCCCGTTGCCTTCGCAAGGCTTGGCAA-----C-TCTTCTTCTTCTTCTTCTATTCCAAGTCTCATCAGAAACGAGCCCGTCTTTGCTGCCCCTACTCCCATCATCAACCCCATTGTGGTACGAATTTTTAACTTACATCACTGTATTTTAATCTGTTATAACAAGTTATTTATATTTGACGTTACTTAATTTATTTTTTAAGCAAGACATTTTTTTTGTCTTATCGTATTTTTTGTAACGACTTGTGTCCATGCATGCTAGTTCACGTGAAAATTCAATATTGGCATAGTTCTAAACTTTAGTTTCTAACCACCTTTATTATTGGTATTGTTATTTTTGGCCATGAATCTCCTGAAGTTAGGTGAATTGATCATGTCGCTCTAAATTGTACACGTCTATTGCGTGTACTCAATGACATATAATATATTATTGCAATCCTAAAATAAGTGTTATTTTAATTTATTTTGAACTCATTAAAATAAATATGATATTTTACTGAGTTACTTATATTTATTACTTTGATTTTTTTGAGTACTAATTTGTATTTTGAAACTTTTAAGATGACGAGAGGGTGGAAATAACAAATTAAATTTGAAAATGAACCAAAATAGAGGTGGCAATTAGGTAGAGGTTCTCGCAAAATGAATATTAAATATGTAGGGCCGTATTGTGAATTATGTGGATAATGTTTTTGCTTTCTATTTTTTTTTAAAAAAAATAATTATTACTTACAATAATCCAACGGGTATCCTCGTATGTGCCCATCCTACAAGTGATAAAATGATAAGTACCAGTCTACCATCAAGTTTGTAGGATAGAAACTATTTAGTATACATTGTTTTTGTCTTAATTTCTAGTTTTGGTATCCATCTAAATCGATACTCCATTATGTTAATTATTTCATTTCTTTCTTTTGACATCTACATCACTTTTTAATGTGGTTACCACTTGCTATAATCATACTTCACTTAGCATTTTATTTGAACTTAGTGAAAGTGAAATTTTTCCTAATAATTGGTCTAAAAATTGAAGAAGATTAAAGCCAAGAAATTGAGTTCTTCCTTCTTTCTTCCAACTTTGAAAGTACCGATAGATACTATCATATAAAAAGAAGAGGTGGTCTGACTAACTCAATGAAGTGAATTTTTCAAAAACATGCTCAGAAAAATGAGAAAAATGGAGTTTTTGAAAAGAAAAATTAACAGATATTTAAAGATAAATTTTTGAAATTTGGTTCAAAATTTATGGTCAAATATTAACTTATATTTATATATATACCTCTTCTAAAATGCTAATGAGAATTAGAATTTGCAGAGAGAAGAAATGGCAAAAGAATCCTACGATCAAGCCATTGCTGCACTCGAGAAACTCCTCAGGTTTGTACTCTCTCTACGACTCTACCTTCTAAATCACACTACTTTTTTCTCGATCAAGTGGGGCCCAAAAAATATACATACACCCACACATACGTAGACAAAAAAAATGTTAAAATTTGCGAATATGCAGAGAAAACATAATATAATCATGCAATGTTTACTCGTAAAATTCAATTTCCCGGCAATGAACATGTTACTTGGTTTCGAGTTCTCCAGATCTGCATTAATTTTACCATTCTATCATCATTTTTTTACCCCATATCTGCATTAATTTATCATGGTAATGGTGCTCAAACCACAAATCTTTTTTTTTTCTACCTGAAATATTGCTTCAATAATAATAATGGTCTAAATTATTTTCTGCAATTACAGCGAGAAAGCAGAACTTGGACCAGTTGCTGCAGCAAGAGTTGACCAGATCACTGCTGAATTGAAATCAGCAGACGGCGGCAAGGCATTCGACCCTGTTGAGCACATGAAAGCTGGCTTTATTCATTTCAAGACTGAGAAATATGAGTAAGCAAATTCATTCAAATTAAAATTTCTGCATATTTGATGTTGTAACATTATTAGTGTCTGATAATTTTTCCTGTTTTCTATTTATGTACCAACAGCACAAACCCAGCCTTATATGGTGAGCTAGCAAAGGGCCAGAGCCCTAAGGTACAAATTCCTTGTTAATTTGTTGTCTAATTTTATGATTTGTACGGTTTCTGATGAGTTCTATTGTCCTAAATGTGTAAACAGTTCATGGTTTTCGCGTGCTCTGACTCACGAGTCTGCCCATCCCATGTCCTCAACTTCCAACCTGGTGAGGCATTCATGGTTCGTAACATCGCCAACATGGTCCCTGCTTATGAC</genome_strand>
        <mrna_strand>TTAGTAACAAAGTAGTATAAAGGGAAAGCAAAAGCTAAAGGAAGCTCATTGAGAAATGTCAACTGCTTCCATTAACAATTGCCTTACTCTCTCCCCTGCTCAAGCTTCCCTTAAGAAACCTACTCGTCCCGTTGCCTTCGCAAGGCTTGGCAACTCTTCTTCTTCTTCTTCTTCTTCTATTCCAAGTCTCATCAGAAACGAGCCCGTCTTTGCTGCCCCTACTCCCATCATCAACCCCATTGTG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGAGAAGAAATGGCAAAAGAATCCTACGATCAGGCCGTTGCTGCACTCGAGAAACTCCTCAG....................................................................................................................................................................................................................................................................................................................................................................................CGAGAAAGCAGAACTTGGACCAGTTGCTGCAGCAAGAGTTGACCAGATCACTGCTGAATTGAAATCAGCAGATGGCGGCAAGGCATTCGACCCTGTTGAGCACATGAAAGCTGGCTTTATTCATTTCAAGACTGAGAAATATGA..................................................................................................TACAAACCCAGCCTTATATGGTGAACTAGCAAAGGGCCAGAGCCCAAAG....................................................................................TTCATGGTTTTCGCGTGCTCTGACTCACGAGTGTGCCCATCCCATGTCCTCAACTTCCAACCTGGTGAGGCATTCATGGTTCGTAACATCGCCAACATGGTCCCTGCTTATGAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0236E02-u8qcS/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E367431" ref_strand="+" ref_description="SGN-E367431 [cLPT-7-D10]">
      <seq>ttagtaacaaagtagtataaagggaaagcaaaagctaaaggaagctcattgagaaatgtcaactgcttccattaacaattgccttactctctcccctgctcaagcttcccttaagaaacctactcgtcccgttgccttcgcaaggcttggcaactcttcttcttcttcttcttcttctattccaagtctcatcagaaacgagcccggctttgctgcccctactcccatcatcaaccccattgtgagagaagaaatggcaaaagaatcctacgatcaggccgttgctgcactcgagaaactcctcagcgagaaagcagaacttggaccacttgctgcagcaagagttgaccagatcactgctgaattgaaatcagcagatggcggcaaggcattcgaccctgttgagcacatgaaagctggctttattcatttcaagactgagaaatatgatacaaacccagccttatatggtgaactagc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0236E02-u8qcS/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0236E02.1" temp_strand="+" temp_description="C02HBa0236E02.1  AC215430.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0236E02 sequenced_by:kribb upload_account_name:korea">
        <position start="14645" stop="17385"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="14945" g_stop="15182" g_length="238"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="244" r_length="244" r_score="0.941"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="15183" i_stop="16379" i_length="1197">
            <donor d_prob="1.000" d_score="0.98"/>
            <acceptor a_prob="0.971" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="16380" g_stop="16441" g_length="62"/>
          <reference_exon_boundary r_type="cDNA" r_start="245" r_stop="306" r_length="62" r_score="0.968"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="16442" i_stop="16813" i_length="372">
            <donor d_prob="0.999" d_score="0.96"/>
            <acceptor a_prob="1.000" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="16814" g_stop="16957" g_length="144"/>
          <reference_exon_boundary r_type="cDNA" r_start="307" r_stop="450" r_length="144" r_score="0.986"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="16958" i_stop="17055" i_length="98">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="17056" g_stop="17085" g_length="30"/>
          <reference_exon_boundary r_type="cDNA" r_start="451" r_stop="480" r_length="30" r_score="0.933"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0236E02.1" gen_strand="+" ref_id="SGN-E367431" ref_strand="+">
        <total_alignment_score>0.959</total_alignment_score>
        <cumulative_length_of_scored_exons>474</cumulative_length_of_scored_exons>
        <coverage percentage="0.988" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0236E02.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E367431" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="14945" e_stop="15182"/>
          <exon e_start="16380" e_stop="16441"/>
          <exon e_start="16814" e_stop="16957"/>
          <exon e_start="17056" e_stop="17085"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTAGTAACAAAGTAGTATAAAGGGCAAGCAAAAGCTAAAGGAAGCTCATTGAGAAATGTCAACTGCTTCCATTAACAATTGCCTTACTCTCTCCCCTGCTCAAGCTTCCCTTAAGAAACCTACTCGTCCCGTTGCCTTCGCAAGGCTTGGCAA-----C-TCTTCTTCTTCTTCTTCTATTCCAAGTCTCATCAGAAACGAGCCCGTCTTTGCTGCCCCTACTCCCATCATCAACCCCATTGTGGTACGAATTTTTAACTTACATCACTGTATTTTAATCTGTTATAACAAGTTATTTATATTTGACGTTACTTAATTTATTTTTTAAGCAAGACATTTTTTTTGTCTTATCGTATTTTTTGTAACGACTTGTGTCCATGCATGCTAGTTCACGTGAAAATTCAATATTGGCATAGTTCTAAACTTTAGTTTCTAACCACCTTTATTATTGGTATTGTTATTTTTGGCCATGAATCTCCTGAAGTTAGGTGAATTGATCATGTCGCTCTAAATTGTACACGTCTATTGCGTGTACTCAATGACATATAATATATTATTGCAATCCTAAAATAAGTGTTATTTTAATTTATTTTGAACTCATTAAAATAAATATGATATTTTACTGAGTTACTTATATTTATTACTTTGATTTTTTTGAGTACTAATTTGTATTTTGAAACTTTTAAGATGACGAGAGGGTGGAAATAACAAATTAAATTTGAAAATGAACCAAAATAGAGGTGGCAATTAGGTAGAGGTTCTCGCAAAATGAATATTAAATATGTAGGGCCGTATTGTGAATTATGTGGATAATGTTTTTGCTTTCTATTTTTTTTTAAAAAAAATAATTATTACTTACAATAATCCAACGGGTATCCTCGTATGTGCCCATCCTACAAGTGATAAAATGATAAGTACCAGTCTACCATCAAGTTTGTAGGATAGAAACTATTTAGTATACATTGTTTTTGTCTTAATTTCTAGTTTTGGTATCCATCTAAATCGATACTCCATTATGTTAATTATTTCATTTCTTTCTTTTGACATCTACATCACTTTTTAATGTGGTTACCACTTGCTATAATCATACTTCACTTAGCATTTTATTTGAACTTAGTGAAAGTGAAATTTTTCCTAATAATTGGTCTAAAAATTGAAGAAGATTAAAGCCAAGAAATTGAGTTCTTCCTTCTTTCTTCCAACTTTGAAAGTACCGATAGATACTATCATATAAAAAGAAGAGGTGGTCTGACTAACTCAATGAAGTGAATTTTTCAAAAACATGCTCAGAAAAATGAGAAAAATGGAGTTTTTGAAAAGAAAAATTAACAGATATTTAAAGATAAATTTTTGAAATTTGGTTCAAAATTTATGGTCAAATATTAACTTATATTTATATATATACCTCTTCTAAAATGCTAATGAGAATTAGAATTTGCAGAGAGAAGAAATGGCAAAAGAATCCTACGATCAAGCCATTGCTGCACTCGAGAAACTCCTCAGGTTTGTACTCTCTCTACGACTCTACCTTCTAAATCACACTACTTTTTTCTCGATCAAGTGGGGCCCAAAAAATATACATACACCCACACATACGTAGACAAAAAAAATGTTAAAATTTGCGAATATGCAGAGAAAACATAATATAATCATGCAATGTTTACTCGTAAAATTCAATTTCCCGGCAATGAACATGTTACTTGGTTTCGAGTTCTCCAGATCTGCATTAATTTTACCATTCTATCATCATTTTTTTACCCCATATCTGCATTAATTTATCATGGTAATGGTGCTCAAACCACAAATCTTTTTTTTTTCTACCTGAAATATTGCTTCAATAATAATAATGGTCTAAATTATTTTCTGCAATTACAGCGAGAAAGCAGAACTTGGACCAGTTGCTGCAGCAAGAGTTGACCAGATCACTGCTGAATTGAAATCAGCAGACGGCGGCAAGGCATTCGACCCTGTTGAGCACATGAAAGCTGGCTTTATTCATTTCAAGACTGAGAAATATGAGTAAGCAAATTCATTCAAATTAAAATTTCTGCATATTTGATGTTGTAACATTATTAGTGTCTGATAATTTTTCCTGTTTTCTATTTATGTACCAACAGCACAAACCCAGCCTTATATGGTGAGCTAGC</genome_strand>
        <mrna_strand>TTAGTAACAAAGTAGTATAAAGGGAAAGCAAAAGCTAAAGGAAGCTCATTGAGAAATGTCAACTGCTTCCATTAACAATTGCCTTACTCTCTCCCCTGCTCAAGCTTCCCTTAAGAAACCTACTCGTCCCGTTGCCTTCGCAAGGCTTGGCAACTCTTCTTCTTCTTCTTCTTCTTCTATTCCAAGTCTCATCAGAAACGAGCCCGGCTTTGCTGCCCCTACTCCCATCATCAACCCCATTGTG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGAGAAGAAATGGCAAAAGAATCCTACGATCAGGCCGTTGCTGCACTCGAGAAACTCCTCAG....................................................................................................................................................................................................................................................................................................................................................................................CGAGAAAGCAGAACTTGGACCACTTGCTGCAGCAAGAGTTGACCAGATCACTGCTGAATTGAAATCAGCAGATGGCGGCAAGGCATTCGACCCTGTTGAGCACATGAAAGCTGGCTTTATTCATTTCAAGACTGAGAAATATGA..................................................................................................TACAAACCCAGCCTTATATGGTGAACTAGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0236E02-u8qcS/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E280775" ref_strand="-" ref_description="SGN-E280775 [cLEL-6-I14](-)">
      <seq>gcacgagcaaagtagtataaagggcaagctaaagctaaaggaagctcattgagaaaggtcaactgcttccattaacaaccgctttactctctcccctgctcaagcttcccttaagaaacctactcgtcccgttgccttcgcaaggcttggcaactcttcttcttcttcttctattccaagtctcatcagaaacgagcccgtctttgctgcccctactcccatcatcaaccccattgtgagagaagaaatggcaaaagaatcctacgatcaag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0236E02-u8qcS/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0236E02.1" temp_strand="+" temp_description="C02HBa0236E02.1  AC215430.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0236E02 sequenced_by:kribb upload_account_name:korea">
        <position start="14650" stop="16713"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="14945" g_stop="15182" g_length="238"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="238" r_length="238" r_score="0.958"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="15183" i_stop="16379" i_length="1197">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.971" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="16380" g_stop="16413" g_length="34"/>
          <reference_exon_boundary r_type="cDNA" r_start="239" r_stop="272" r_length="34" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0236E02.1" gen_strand="+" ref_id="SGN-E280775" ref_strand="-">
        <total_alignment_score>0.958</total_alignment_score>
        <cumulative_length_of_scored_exons>272</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0236E02.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E280775" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="14945" e_stop="15182"/>
          <exon e_start="16380" e_stop="16413"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTAGTAACAAAGTAGTATAAAGGGCAAGCAAAAGCTAAAGGAAGCTCATTGAGAAATGTCAACTGCTTCCATTAACAATTGCCTTACTCTCTCCCCTGCTCAAGCTTCCCTTAAGAAACCTACTCGTCCCGTTGCCTTCGCAAGGCTTGGCAACTCTTCTTCTTCTTCTTCTATTCCAAGTCTCATCAGAAACGAGCCCGTCTTTGCTGCCCCTACTCCCATCATCAACCCCATTGTGGTACGAATTTTTAACTTACATCACTGTATTTTAATCTGTTATAACAAGTTATTTATATTTGACGTTACTTAATTTATTTTTTAAGCAAGACATTTTTTTTGTCTTATCGTATTTTTTGTAACGACTTGTGTCCATGCATGCTAGTTCACGTGAAAATTCAATATTGGCATAGTTCTAAACTTTAGTTTCTAACCACCTTTATTATTGGTATTGTTATTTTTGGCCATGAATCTCCTGAAGTTAGGTGAATTGATCATGTCGCTCTAAATTGTACACGTCTATTGCGTGTACTCAATGACATATAATATATTATTGCAATCCTAAAATAAGTGTTATTTTAATTTATTTTGAACTCATTAAAATAAATATGATATTTTACTGAGTTACTTATATTTATTACTTTGATTTTTTTGAGTACTAATTTGTATTTTGAAACTTTTAAGATGACGAGAGGGTGGAAATAACAAATTAAATTTGAAAATGAACCAAAATAGAGGTGGCAATTAGGTAGAGGTTCTCGCAAAATGAATATTAAATATGTAGGGCCGTATTGTGAATTATGTGGATAATGTTTTTGCTTTCTATTTTTTTTTAAAAAAAATAATTATTACTTACAATAATCCAACGGGTATCCTCGTATGTGCCCATCCTACAAGTGATAAAATGATAAGTACCAGTCTACCATCAAGTTTGTAGGATAGAAACTATTTAGTATACATTGTTTTTGTCTTAATTTCTAGTTTTGGTATCCATCTAAATCGATACTCCATTATGTTAATTATTTCATTTCTTTCTTTTGACATCTACATCACTTTTTAATGTGGTTACCACTTGCTATAATCATACTTCACTTAGCATTTTATTTGAACTTAGTGAAAGTGAAATTTTTCCTAATAATTGGTCTAAAAATTGAAGAAGATTAAAGCCAAGAAATTGAGTTCTTCCTTCTTTCTTCCAACTTTGAAAGTACCGATAGATACTATCATATAAAAAGAAGAGGTGGTCTGACTAACTCAATGAAGTGAATTTTTCAAAAACATGCTCAGAAAAATGAGAAAAATGGAGTTTTTGAAAAGAAAAATTAACAGATATTTAAAGATAAATTTTTGAAATTTGGTTCAAAATTTATGGTCAAATATTAACTTATATTTATATATATACCTCTTCTAAAATGCTAATGAGAATTAGAATTTGCAGAGAGAAGAAATGGCAAAAGAATCCTACGATCAAG</genome_strand>
        <mrna_strand>GCACGAGCAAAGTAGTATAAAGGGCAAGCTAAAGCTAAAGGAAGCTCATTGAGAAAGGTCAACTGCTTCCATTAACAACCGCTTTACTCTCTCCCCTGCTCAAGCTTCCCTTAAGAAACCTACTCGTCCCGTTGCCTTCGCAAGGCTTGGCAACTCTTCTTCTTCTTCTTCTATTCCAAGTCTCATCAGAAACGAGCCCGTCTTTGCTGCCCCTACTCCCATCATCAACCCCATTGTG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGAGAAGAAATGGCAAAAGAATCCTACGATCAAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0236E02-u8qcS/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E268046" ref_strand="+" ref_description="SGN-E268046 [cLEI-15-N13]">
      <seq>tagtaacaaagtagtataaagggcaagcaaaagctaaaggaagctcattgagaaatgtcaactgcttccattaacaattgccttactctctcccctgctcaagcttcccttaagaaacctactcgtcccgttgccttcgcaaggcttggcaactcttcttcttcttcttctattccaagtctcatcagaaacgagcccgtctttgctgcccctactcccatcatcaaccccattgtgagagaagaaatggcaaaagaatcctacgatcaagccattgctgcactcgagaaactcctcagcgagaaagcagaacttggaccagttgctgcagcaagagttgaccagatcactgctgaattgaaatcagcagacggcggcaaggcattcgaccctgttgagcacatgaaagctggctttattcatttcaagactgagaaatatgacacaaacccagccttatatggtgagctagcaaagggccagagccctaagttcatggttttcgcgtgctctgactcacgagtctgcccatcccatgtcctcaacttccaacctggtgaggcattcatggttcgtaacatcgccaacatggtccctgcttatgac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0236E02-u8qcS/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0236E02.1" temp_strand="+" temp_description="C02HBa0236E02.1  AC215430.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0236E02 sequenced_by:kribb upload_account_name:korea">
        <position start="14646" stop="17602"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="14946" g_stop="15182" g_length="237"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="237" r_length="237" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="15183" i_stop="16379" i_length="1197">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.971" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="16380" g_stop="16441" g_length="62"/>
          <reference_exon_boundary r_type="cDNA" r_start="238" r_stop="299" r_length="62" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="16442" i_stop="16813" i_length="372">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="16814" g_stop="16957" g_length="144"/>
          <reference_exon_boundary r_type="cDNA" r_start="300" r_stop="443" r_length="144" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="16958" i_stop="17055" i_length="98">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="17056" g_stop="17104" g_length="49"/>
          <reference_exon_boundary r_type="cDNA" r_start="444" r_stop="492" r_length="49" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="17105" i_stop="17188" i_length="84">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.961" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="17189" g_stop="17302" g_length="114"/>
          <reference_exon_boundary r_type="cDNA" r_start="493" r_stop="606" r_length="114" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0236E02.1" gen_strand="+" ref_id="SGN-E268046" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>606</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0236E02.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E268046" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="14946" e_stop="15182"/>
          <exon e_start="16380" e_stop="16441"/>
          <exon e_start="16814" e_stop="16957"/>
          <exon e_start="17056" e_stop="17104"/>
          <exon e_start="17189" e_stop="17302"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TAGTAACAAAGTAGTATAAAGGGCAAGCAAAAGCTAAAGGAAGCTCATTGAGAAATGTCAACTGCTTCCATTAACAATTGCCTTACTCTCTCCCCTGCTCAAGCTTCCCTTAAGAAACCTACTCGTCCCGTTGCCTTCGCAAGGCTTGGCAACTCTTCTTCTTCTTCTTCTATTCCAAGTCTCATCAGAAACGAGCCCGTCTTTGCTGCCCCTACTCCCATCATCAACCCCATTGTGGTACGAATTTTTAACTTACATCACTGTATTTTAATCTGTTATAACAAGTTATTTATATTTGACGTTACTTAATTTATTTTTTAAGCAAGACATTTTTTTTGTCTTATCGTATTTTTTGTAACGACTTGTGTCCATGCATGCTAGTTCACGTGAAAATTCAATATTGGCATAGTTCTAAACTTTAGTTTCTAACCACCTTTATTATTGGTATTGTTATTTTTGGCCATGAATCTCCTGAAGTTAGGTGAATTGATCATGTCGCTCTAAATTGTACACGTCTATTGCGTGTACTCAATGACATATAATATATTATTGCAATCCTAAAATAAGTGTTATTTTAATTTATTTTGAACTCATTAAAATAAATATGATATTTTACTGAGTTACTTATATTTATTACTTTGATTTTTTTGAGTACTAATTTGTATTTTGAAACTTTTAAGATGACGAGAGGGTGGAAATAACAAATTAAATTTGAAAATGAACCAAAATAGAGGTGGCAATTAGGTAGAGGTTCTCGCAAAATGAATATTAAATATGTAGGGCCGTATTGTGAATTATGTGGATAATGTTTTTGCTTTCTATTTTTTTTTAAAAAAAATAATTATTACTTACAATAATCCAACGGGTATCCTCGTATGTGCCCATCCTACAAGTGATAAAATGATAAGTACCAGTCTACCATCAAGTTTGTAGGATAGAAACTATTTAGTATACATTGTTTTTGTCTTAATTTCTAGTTTTGGTATCCATCTAAATCGATACTCCATTATGTTAATTATTTCATTTCTTTCTTTTGACATCTACATCACTTTTTAATGTGGTTACCACTTGCTATAATCATACTTCACTTAGCATTTTATTTGAACTTAGTGAAAGTGAAATTTTTCCTAATAATTGGTCTAAAAATTGAAGAAGATTAAAGCCAAGAAATTGAGTTCTTCCTTCTTTCTTCCAACTTTGAAAGTACCGATAGATACTATCATATAAAAAGAAGAGGTGGTCTGACTAACTCAATGAAGTGAATTTTTCAAAAACATGCTCAGAAAAATGAGAAAAATGGAGTTTTTGAAAAGAAAAATTAACAGATATTTAAAGATAAATTTTTGAAATTTGGTTCAAAATTTATGGTCAAATATTAACTTATATTTATATATATACCTCTTCTAAAATGCTAATGAGAATTAGAATTTGCAGAGAGAAGAAATGGCAAAAGAATCCTACGATCAAGCCATTGCTGCACTCGAGAAACTCCTCAGGTTTGTACTCTCTCTACGACTCTACCTTCTAAATCACACTACTTTTTTCTCGATCAAGTGGGGCCCAAAAAATATACATACACCCACACATACGTAGACAAAAAAAATGTTAAAATTTGCGAATATGCAGAGAAAACATAATATAATCATGCAATGTTTACTCGTAAAATTCAATTTCCCGGCAATGAACATGTTACTTGGTTTCGAGTTCTCCAGATCTGCATTAATTTTACCATTCTATCATCATTTTTTTACCCCATATCTGCATTAATTTATCATGGTAATGGTGCTCAAACCACAAATCTTTTTTTTTTCTACCTGAAATATTGCTTCAATAATAATAATGGTCTAAATTATTTTCTGCAATTACAGCGAGAAAGCAGAACTTGGACCAGTTGCTGCAGCAAGAGTTGACCAGATCACTGCTGAATTGAAATCAGCAGACGGCGGCAAGGCATTCGACCCTGTTGAGCACATGAAAGCTGGCTTTATTCATTTCAAGACTGAGAAATATGAGTAAGCAAATTCATTCAAATTAAAATTTCTGCATATTTGATGTTGTAACATTATTAGTGTCTGATAATTTTTCCTGTTTTCTATTTATGTACCAACAGCACAAACCCAGCCTTATATGGTGAGCTAGCAAAGGGCCAGAGCCCTAAGGTACAAATTCCTTGTTAATTTGTTGTCTAATTTTATGATTTGTACGGTTTCTGATGAGTTCTATTGTCCTAAATGTGTAAACAGTTCATGGTTTTCGCGTGCTCTGACTCACGAGTCTGCCCATCCCATGTCCTCAACTTCCAACCTGGTGAGGCATTCATGGTTCGTAACATCGCCAACATGGTCCCTGCTTATGAC</genome_strand>
        <mrna_strand>TAGTAACAAAGTAGTATAAAGGGCAAGCAAAAGCTAAAGGAAGCTCATTGAGAAATGTCAACTGCTTCCATTAACAATTGCCTTACTCTCTCCCCTGCTCAAGCTTCCCTTAAGAAACCTACTCGTCCCGTTGCCTTCGCAAGGCTTGGCAACTCTTCTTCTTCTTCTTCTATTCCAAGTCTCATCAGAAACGAGCCCGTCTTTGCTGCCCCTACTCCCATCATCAACCCCATTGTG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGAGAAGAAATGGCAAAAGAATCCTACGATCAAGCCATTGCTGCACTCGAGAAACTCCTCAG....................................................................................................................................................................................................................................................................................................................................................................................CGAGAAAGCAGAACTTGGACCAGTTGCTGCAGCAAGAGTTGACCAGATCACTGCTGAATTGAAATCAGCAGACGGCGGCAAGGCATTCGACCCTGTTGAGCACATGAAAGCTGGCTTTATTCATTTCAAGACTGAGAAATATGA..................................................................................................CACAAACCCAGCCTTATATGGTGAGCTAGCAAAGGGCCAGAGCCCTAAG....................................................................................TTCATGGTTTTCGCGTGCTCTGACTCACGAGTCTGCCCATCCCATGTCCTCAACTTCCAACCTGGTGAGGCATTCATGGTTCGTAACATCGCCAACATGGTCCCTGCTTATGAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0236E02-u8qcS/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E283468" ref_strand="+" ref_description="SGN-E283468 [cLER-12-D14]">
      <seq>tagtaacaaagtagtataaagggcaagcaaaagctaaaggaagctcattgagaaatgtcaactgcttccattaacaattgccttactctctcccctgctcaagcttcccttaagaaacctactcgtcccgttgccttcgcaaggcttggcaactcttcttcttcttcttctattccaagtctcatcagaaacgagcccgtctttgctgcccctactcccatcatcaaccccattgtgagagaagaaatggcaaaagaatcctacgatcaagccattgctgcactcgagaaactcctcagcgagaaagcagaacttggaccagttgctgcagcaagagttgaccagatcactgctgaattgaaatcagcagacggcggcaaggcattcgaccctgttgagcacatgaaagctggctttattcatttcaagactgagaaatatgacacaaacccagccttatatggtgagctagcaaagggccagagccctaagttcatggttttcgcgtgctctgactcacgagtctgcccatcccatgtcctcaac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0236E02-u8qcS/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0236E02.1" temp_strand="+" temp_description="C02HBa0236E02.1  AC215430.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0236E02 sequenced_by:kribb upload_account_name:korea">
        <position start="14646" stop="17542"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="14946" g_stop="15182" g_length="237"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="237" r_length="237" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="15183" i_stop="16379" i_length="1197">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.971" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="16380" g_stop="16441" g_length="62"/>
          <reference_exon_boundary r_type="cDNA" r_start="238" r_stop="299" r_length="62" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="16442" i_stop="16813" i_length="372">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="16814" g_stop="16957" g_length="144"/>
          <reference_exon_boundary r_type="cDNA" r_start="300" r_stop="443" r_length="144" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="16958" i_stop="17055" i_length="98">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="17056" g_stop="17104" g_length="49"/>
          <reference_exon_boundary r_type="cDNA" r_start="444" r_stop="492" r_length="49" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="17105" i_stop="17188" i_length="84">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.961" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="17189" g_stop="17242" g_length="54"/>
          <reference_exon_boundary r_type="cDNA" r_start="493" r_stop="546" r_length="54" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0236E02.1" gen_strand="+" ref_id="SGN-E283468" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>546</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0236E02.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E283468" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="14946" e_stop="15182"/>
          <exon e_start="16380" e_stop="16441"/>
          <exon e_start="16814" e_stop="16957"/>
          <exon e_start="17056" e_stop="17104"/>
          <exon e_start="17189" e_stop="17242"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TAGTAACAAAGTAGTATAAAGGGCAAGCAAAAGCTAAAGGAAGCTCATTGAGAAATGTCAACTGCTTCCATTAACAATTGCCTTACTCTCTCCCCTGCTCAAGCTTCCCTTAAGAAACCTACTCGTCCCGTTGCCTTCGCAAGGCTTGGCAACTCTTCTTCTTCTTCTTCTATTCCAAGTCTCATCAGAAACGAGCCCGTCTTTGCTGCCCCTACTCCCATCATCAACCCCATTGTGGTACGAATTTTTAACTTACATCACTGTATTTTAATCTGTTATAACAAGTTATTTATATTTGACGTTACTTAATTTATTTTTTAAGCAAGACATTTTTTTTGTCTTATCGTATTTTTTGTAACGACTTGTGTCCATGCATGCTAGTTCACGTGAAAATTCAATATTGGCATAGTTCTAAACTTTAGTTTCTAACCACCTTTATTATTGGTATTGTTATTTTTGGCCATGAATCTCCTGAAGTTAGGTGAATTGATCATGTCGCTCTAAATTGTACACGTCTATTGCGTGTACTCAATGACATATAATATATTATTGCAATCCTAAAATAAGTGTTATTTTAATTTATTTTGAACTCATTAAAATAAATATGATATTTTACTGAGTTACTTATATTTATTACTTTGATTTTTTTGAGTACTAATTTGTATTTTGAAACTTTTAAGATGACGAGAGGGTGGAAATAACAAATTAAATTTGAAAATGAACCAAAATAGAGGTGGCAATTAGGTAGAGGTTCTCGCAAAATGAATATTAAATATGTAGGGCCGTATTGTGAATTATGTGGATAATGTTTTTGCTTTCTATTTTTTTTTAAAAAAAATAATTATTACTTACAATAATCCAACGGGTATCCTCGTATGTGCCCATCCTACAAGTGATAAAATGATAAGTACCAGTCTACCATCAAGTTTGTAGGATAGAAACTATTTAGTATACATTGTTTTTGTCTTAATTTCTAGTTTTGGTATCCATCTAAATCGATACTCCATTATGTTAATTATTTCATTTCTTTCTTTTGACATCTACATCACTTTTTAATGTGGTTACCACTTGCTATAATCATACTTCACTTAGCATTTTATTTGAACTTAGTGAAAGTGAAATTTTTCCTAATAATTGGTCTAAAAATTGAAGAAGATTAAAGCCAAGAAATTGAGTTCTTCCTTCTTTCTTCCAACTTTGAAAGTACCGATAGATACTATCATATAAAAAGAAGAGGTGGTCTGACTAACTCAATGAAGTGAATTTTTCAAAAACATGCTCAGAAAAATGAGAAAAATGGAGTTTTTGAAAAGAAAAATTAACAGATATTTAAAGATAAATTTTTGAAATTTGGTTCAAAATTTATGGTCAAATATTAACTTATATTTATATATATACCTCTTCTAAAATGCTAATGAGAATTAGAATTTGCAGAGAGAAGAAATGGCAAAAGAATCCTACGATCAAGCCATTGCTGCACTCGAGAAACTCCTCAGGTTTGTACTCTCTCTACGACTCTACCTTCTAAATCACACTACTTTTTTCTCGATCAAGTGGGGCCCAAAAAATATACATACACCCACACATACGTAGACAAAAAAAATGTTAAAATTTGCGAATATGCAGAGAAAACATAATATAATCATGCAATGTTTACTCGTAAAATTCAATTTCCCGGCAATGAACATGTTACTTGGTTTCGAGTTCTCCAGATCTGCATTAATTTTACCATTCTATCATCATTTTTTTACCCCATATCTGCATTAATTTATCATGGTAATGGTGCTCAAACCACAAATCTTTTTTTTTTCTACCTGAAATATTGCTTCAATAATAATAATGGTCTAAATTATTTTCTGCAATTACAGCGAGAAAGCAGAACTTGGACCAGTTGCTGCAGCAAGAGTTGACCAGATCACTGCTGAATTGAAATCAGCAGACGGCGGCAAGGCATTCGACCCTGTTGAGCACATGAAAGCTGGCTTTATTCATTTCAAGACTGAGAAATATGAGTAAGCAAATTCATTCAAATTAAAATTTCTGCATATTTGATGTTGTAACATTATTAGTGTCTGATAATTTTTCCTGTTTTCTATTTATGTACCAACAGCACAAACCCAGCCTTATATGGTGAGCTAGCAAAGGGCCAGAGCCCTAAGGTACAAATTCCTTGTTAATTTGTTGTCTAATTTTATGATTTGTACGGTTTCTGATGAGTTCTATTGTCCTAAATGTGTAAACAGTTCATGGTTTTCGCGTGCTCTGACTCACGAGTCTGCCCATCCCATGTCCTCAAC</genome_strand>
        <mrna_strand>TAGTAACAAAGTAGTATAAAGGGCAAGCAAAAGCTAAAGGAAGCTCATTGAGAAATGTCAACTGCTTCCATTAACAATTGCCTTACTCTCTCCCCTGCTCAAGCTTCCCTTAAGAAACCTACTCGTCCCGTTGCCTTCGCAAGGCTTGGCAACTCTTCTTCTTCTTCTTCTATTCCAAGTCTCATCAGAAACGAGCCCGTCTTTGCTGCCCCTACTCCCATCATCAACCCCATTGTG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGAGAAGAAATGGCAAAAGAATCCTACGATCAAGCCATTGCTGCACTCGAGAAACTCCTCAG....................................................................................................................................................................................................................................................................................................................................................................................CGAGAAAGCAGAACTTGGACCAGTTGCTGCAGCAAGAGTTGACCAGATCACTGCTGAATTGAAATCAGCAGACGGCGGCAAGGCATTCGACCCTGTTGAGCACATGAAAGCTGGCTTTATTCATTTCAAGACTGAGAAATATGA..................................................................................................CACAAACCCAGCCTTATATGGTGAGCTAGCAAAGGGCCAGAGCCCTAAG....................................................................................TTCATGGTTTTCGCGTGCTCTGACTCACGAGTCTGCCCATCCCATGTCCTCAAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0236E02-u8qcS/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E284295" ref_strand="+" ref_description="SGN-E284295 [cLER-16-P23]">
      <seq>agtaacaaagtagtataaagggcaagcaaaagctaaaggaagctcattgagaaatgtcaactgcttccattaacaattgccttactctctcccctgctcaagcttcccttaagaaacctactcgtcccgttgccttcgcaaggcttggcaactcttcttcttcttcttctattccaagtctcatcagaaacgagcccgtctttgctgcccctactcccatcatcaaccccattgtgagagaagaaatggcaaaagaatcctacgatcaagccattgctgcactcgagaaactcctcagcgagaaagcagaacttggaccagttgctgcagcaag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0236E02-u8qcS/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0236E02.1" temp_strand="+" temp_description="C02HBa0236E02.1  AC215430.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0236E02 sequenced_by:kribb upload_account_name:korea">
        <position start="14647" stop="17149"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="14947" g_stop="15182" g_length="236"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="236" r_length="236" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="15183" i_stop="16379" i_length="1197">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.971" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="16380" g_stop="16441" g_length="62"/>
          <reference_exon_boundary r_type="cDNA" r_start="237" r_stop="298" r_length="62" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="16442" i_stop="16813" i_length="372">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="16814" g_stop="16849" g_length="36"/>
          <reference_exon_boundary r_type="cDNA" r_start="299" r_stop="334" r_length="36" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0236E02.1" gen_strand="+" ref_id="SGN-E284295" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>334</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0236E02.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E284295" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="14947" e_stop="15182"/>
          <exon e_start="16380" e_stop="16441"/>
          <exon e_start="16814" e_stop="16849"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGTAACAAAGTAGTATAAAGGGCAAGCAAAAGCTAAAGGAAGCTCATTGAGAAATGTCAACTGCTTCCATTAACAATTGCCTTACTCTCTCCCCTGCTCAAGCTTCCCTTAAGAAACCTACTCGTCCCGTTGCCTTCGCAAGGCTTGGCAACTCTTCTTCTTCTTCTTCTATTCCAAGTCTCATCAGAAACGAGCCCGTCTTTGCTGCCCCTACTCCCATCATCAACCCCATTGTGGTACGAATTTTTAACTTACATCACTGTATTTTAATCTGTTATAACAAGTTATTTATATTTGACGTTACTTAATTTATTTTTTAAGCAAGACATTTTTTTTGTCTTATCGTATTTTTTGTAACGACTTGTGTCCATGCATGCTAGTTCACGTGAAAATTCAATATTGGCATAGTTCTAAACTTTAGTTTCTAACCACCTTTATTATTGGTATTGTTATTTTTGGCCATGAATCTCCTGAAGTTAGGTGAATTGATCATGTCGCTCTAAATTGTACACGTCTATTGCGTGTACTCAATGACATATAATATATTATTGCAATCCTAAAATAAGTGTTATTTTAATTTATTTTGAACTCATTAAAATAAATATGATATTTTACTGAGTTACTTATATTTATTACTTTGATTTTTTTGAGTACTAATTTGTATTTTGAAACTTTTAAGATGACGAGAGGGTGGAAATAACAAATTAAATTTGAAAATGAACCAAAATAGAGGTGGCAATTAGGTAGAGGTTCTCGCAAAATGAATATTAAATATGTAGGGCCGTATTGTGAATTATGTGGATAATGTTTTTGCTTTCTATTTTTTTTTAAAAAAAATAATTATTACTTACAATAATCCAACGGGTATCCTCGTATGTGCCCATCCTACAAGTGATAAAATGATAAGTACCAGTCTACCATCAAGTTTGTAGGATAGAAACTATTTAGTATACATTGTTTTTGTCTTAATTTCTAGTTTTGGTATCCATCTAAATCGATACTCCATTATGTTAATTATTTCATTTCTTTCTTTTGACATCTACATCACTTTTTAATGTGGTTACCACTTGCTATAATCATACTTCACTTAGCATTTTATTTGAACTTAGTGAAAGTGAAATTTTTCCTAATAATTGGTCTAAAAATTGAAGAAGATTAAAGCCAAGAAATTGAGTTCTTCCTTCTTTCTTCCAACTTTGAAAGTACCGATAGATACTATCATATAAAAAGAAGAGGTGGTCTGACTAACTCAATGAAGTGAATTTTTCAAAAACATGCTCAGAAAAATGAGAAAAATGGAGTTTTTGAAAAGAAAAATTAACAGATATTTAAAGATAAATTTTTGAAATTTGGTTCAAAATTTATGGTCAAATATTAACTTATATTTATATATATACCTCTTCTAAAATGCTAATGAGAATTAGAATTTGCAGAGAGAAGAAATGGCAAAAGAATCCTACGATCAAGCCATTGCTGCACTCGAGAAACTCCTCAGGTTTGTACTCTCTCTACGACTCTACCTTCTAAATCACACTACTTTTTTCTCGATCAAGTGGGGCCCAAAAAATATACATACACCCACACATACGTAGACAAAAAAAATGTTAAAATTTGCGAATATGCAGAGAAAACATAATATAATCATGCAATGTTTACTCGTAAAATTCAATTTCCCGGCAATGAACATGTTACTTGGTTTCGAGTTCTCCAGATCTGCATTAATTTTACCATTCTATCATCATTTTTTTACCCCATATCTGCATTAATTTATCATGGTAATGGTGCTCAAACCACAAATCTTTTTTTTTTCTACCTGAAATATTGCTTCAATAATAATAATGGTCTAAATTATTTTCTGCAATTACAGCGAGAAAGCAGAACTTGGACCAGTTGCTGCAGCAAG</genome_strand>
        <mrna_strand>AGTAACAAAGTAGTATAAAGGGCAAGCAAAAGCTAAAGGAAGCTCATTGAGAAATGTCAACTGCTTCCATTAACAATTGCCTTACTCTCTCCCCTGCTCAAGCTTCCCTTAAGAAACCTACTCGTCCCGTTGCCTTCGCAAGGCTTGGCAACTCTTCTTCTTCTTCTTCTATTCCAAGTCTCATCAGAAACGAGCCCGTCTTTGCTGCCCCTACTCCCATCATCAACCCCATTGTG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGAGAAGAAATGGCAAAAGAATCCTACGATCAAGCCATTGCTGCACTCGAGAAACTCCTCAG....................................................................................................................................................................................................................................................................................................................................................................................CGAGAAAGCAGAACTTGGACCAGTTGCTGCAGCAAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0236E02-u8qcS/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E278143" ref_strand="+" ref_description="SGN-E278143 [cLER-9-A5]">
      <seq>taacaaagtagtataaagggcaagcaaaagctaaaggaagctcattgagaaatgtcaactgcttccattaacaattgccttactctctcccctgctcaagcttcccttaagaaacctactcgtcccgttgccttcgcaaggcttggcaactcttcttcttcttcttctattccaagtctcatcagaaacgagcccgtctttgctgcccctactcccatcatcaaccccattgtgagagaagaaatggcaaaagaatcctacgatcaagccattgctgcactcgagaaactcctcagcgagaaagcagaacttggaccagttgctgcagcaagagttgaccagatcactgctgaattgaaatcagcagacggcggcaaggcattcgaccctgttgagcacatgaaagctggctttattcatttcaagactgagaaatatgacacaaacccagccttatatggtgagctagcaaagggccagagccctaagttcatggttntcgcgtgctctgactcacgagtctgcccatcccatg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0236E02-u8qcS/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0236E02.1" temp_strand="+" temp_description="C02HBa0236E02.1  AC215430.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0236E02 sequenced_by:kribb upload_account_name:korea">
        <position start="14649" stop="17534"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="14949" g_stop="15182" g_length="234"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="234" r_length="234" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="15183" i_stop="16379" i_length="1197">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.971" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="16380" g_stop="16441" g_length="62"/>
          <reference_exon_boundary r_type="cDNA" r_start="235" r_stop="296" r_length="62" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="16442" i_stop="16813" i_length="372">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="16814" g_stop="16957" g_length="144"/>
          <reference_exon_boundary r_type="cDNA" r_start="297" r_stop="440" r_length="144" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="16958" i_stop="17055" i_length="98">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="17056" g_stop="17104" g_length="49"/>
          <reference_exon_boundary r_type="cDNA" r_start="441" r_stop="489" r_length="49" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="17105" i_stop="17188" i_length="84">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.961" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="17189" g_stop="17234" g_length="46"/>
          <reference_exon_boundary r_type="cDNA" r_start="490" r_stop="535" r_length="46" r_score="0.978"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0236E02.1" gen_strand="+" ref_id="SGN-E278143" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>535</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0236E02.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E278143" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="14949" e_stop="15182"/>
          <exon e_start="16380" e_stop="16441"/>
          <exon e_start="16814" e_stop="16957"/>
          <exon e_start="17056" e_stop="17104"/>
          <exon e_start="17189" e_stop="17234"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TAACAAAGTAGTATAAAGGGCAAGCAAAAGCTAAAGGAAGCTCATTGAGAAATGTCAACTGCTTCCATTAACAATTGCCTTACTCTCTCCCCTGCTCAAGCTTCCCTTAAGAAACCTACTCGTCCCGTTGCCTTCGCAAGGCTTGGCAACTCTTCTTCTTCTTCTTCTATTCCAAGTCTCATCAGAAACGAGCCCGTCTTTGCTGCCCCTACTCCCATCATCAACCCCATTGTGGTACGAATTTTTAACTTACATCACTGTATTTTAATCTGTTATAACAAGTTATTTATATTTGACGTTACTTAATTTATTTTTTAAGCAAGACATTTTTTTTGTCTTATCGTATTTTTTGTAACGACTTGTGTCCATGCATGCTAGTTCACGTGAAAATTCAATATTGGCATAGTTCTAAACTTTAGTTTCTAACCACCTTTATTATTGGTATTGTTATTTTTGGCCATGAATCTCCTGAAGTTAGGTGAATTGATCATGTCGCTCTAAATTGTACACGTCTATTGCGTGTACTCAATGACATATAATATATTATTGCAATCCTAAAATAAGTGTTATTTTAATTTATTTTGAACTCATTAAAATAAATATGATATTTTACTGAGTTACTTATATTTATTACTTTGATTTTTTTGAGTACTAATTTGTATTTTGAAACTTTTAAGATGACGAGAGGGTGGAAATAACAAATTAAATTTGAAAATGAACCAAAATAGAGGTGGCAATTAGGTAGAGGTTCTCGCAAAATGAATATTAAATATGTAGGGCCGTATTGTGAATTATGTGGATAATGTTTTTGCTTTCTATTTTTTTTTAAAAAAAATAATTATTACTTACAATAATCCAACGGGTATCCTCGTATGTGCCCATCCTACAAGTGATAAAATGATAAGTACCAGTCTACCATCAAGTTTGTAGGATAGAAACTATTTAGTATACATTGTTTTTGTCTTAATTTCTAGTTTTGGTATCCATCTAAATCGATACTCCATTATGTTAATTATTTCATTTCTTTCTTTTGACATCTACATCACTTTTTAATGTGGTTACCACTTGCTATAATCATACTTCACTTAGCATTTTATTTGAACTTAGTGAAAGTGAAATTTTTCCTAATAATTGGTCTAAAAATTGAAGAAGATTAAAGCCAAGAAATTGAGTTCTTCCTTCTTTCTTCCAACTTTGAAAGTACCGATAGATACTATCATATAAAAAGAAGAGGTGGTCTGACTAACTCAATGAAGTGAATTTTTCAAAAACATGCTCAGAAAAATGAGAAAAATGGAGTTTTTGAAAAGAAAAATTAACAGATATTTAAAGATAAATTTTTGAAATTTGGTTCAAAATTTATGGTCAAATATTAACTTATATTTATATATATACCTCTTCTAAAATGCTAATGAGAATTAGAATTTGCAGAGAGAAGAAATGGCAAAAGAATCCTACGATCAAGCCATTGCTGCACTCGAGAAACTCCTCAGGTTTGTACTCTCTCTACGACTCTACCTTCTAAATCACACTACTTTTTTCTCGATCAAGTGGGGCCCAAAAAATATACATACACCCACACATACGTAGACAAAAAAAATGTTAAAATTTGCGAATATGCAGAGAAAACATAATATAATCATGCAATGTTTACTCGTAAAATTCAATTTCCCGGCAATGAACATGTTACTTGGTTTCGAGTTCTCCAGATCTGCATTAATTTTACCATTCTATCATCATTTTTTTACCCCATATCTGCATTAATTTATCATGGTAATGGTGCTCAAACCACAAATCTTTTTTTTTTCTACCTGAAATATTGCTTCAATAATAATAATGGTCTAAATTATTTTCTGCAATTACAGCGAGAAAGCAGAACTTGGACCAGTTGCTGCAGCAAGAGTTGACCAGATCACTGCTGAATTGAAATCAGCAGACGGCGGCAAGGCATTCGACCCTGTTGAGCACATGAAAGCTGGCTTTATTCATTTCAAGACTGAGAAATATGAGTAAGCAAATTCATTCAAATTAAAATTTCTGCATATTTGATGTTGTAACATTATTAGTGTCTGATAATTTTTCCTGTTTTCTATTTATGTACCAACAGCACAAACCCAGCCTTATATGGTGAGCTAGCAAAGGGCCAGAGCCCTAAGGTACAAATTCCTTGTTAATTTGTTGTCTAATTTTATGATTTGTACGGTTTCTGATGAGTTCTATTGTCCTAAATGTGTAAACAGTTCATGGTTTTCGCGTGCTCTGACTCACGAGTCTGCCCATCCCATG</genome_strand>
        <mrna_strand>TAACAAAGTAGTATAAAGGGCAAGCAAAAGCTAAAGGAAGCTCATTGAGAAATGTCAACTGCTTCCATTAACAATTGCCTTACTCTCTCCCCTGCTCAAGCTTCCCTTAAGAAACCTACTCGTCCCGTTGCCTTCGCAAGGCTTGGCAACTCTTCTTCTTCTTCTTCTATTCCAAGTCTCATCAGAAACGAGCCCGTCTTTGCTGCCCCTACTCCCATCATCAACCCCATTGTG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGAGAAGAAATGGCAAAAGAATCCTACGATCAAGCCATTGCTGCACTCGAGAAACTCCTCAG....................................................................................................................................................................................................................................................................................................................................................................................CGAGAAAGCAGAACTTGGACCAGTTGCTGCAGCAAGAGTTGACCAGATCACTGCTGAATTGAAATCAGCAGACGGCGGCAAGGCATTCGACCCTGTTGAGCACATGAAAGCTGGCTTTATTCATTTCAAGACTGAGAAATATGA..................................................................................................CACAAACCCAGCCTTATATGGTGAGCTAGCAAAGGGCCAGAGCCCTAAG....................................................................................TTCATGGTTNTCGCGTGCTCTGACTCACGAGTCTGCCCATCCCATG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0236E02-u8qcS/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E477315" ref_strand="+" ref_description="SGN-E477315 [cSTB-47-H20]">
      <seq>taacaaagtaatataaagggcaagcaaaagctaaaggaagctcattgagaaatgtcaactgcttccattaacaattgccttactatctcccctgctcaagcttcccttaagaaacctactcgtcccgttgccttcgcaaggcttggcaactcttcttctccttctattccaagtctcatcagaaacgagcccgtctttgctgctcctactcgcatcatcaaccccattgtgagagaagaaatggcaaaagaatcctacgatcaggccattgctgcactcgagaaactcctcagcgagaaagcagaacttggaccagttgctgcagcaagagttgaccagattactgctgaattgaaatcagcagatggaagcaaggccttcgaccctgttgagcacatgaaagctggctttattcatttcaagactgagaaatatgat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0236E02-u8qcS/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0236E02.1" temp_strand="+" temp_description="C02HBa0236E02.1  AC215430.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0236E02 sequenced_by:kribb upload_account_name:korea">
        <position start="14649" stop="17257"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="14949" g_stop="15182" g_length="234"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="231" r_length="231" r_score="0.970"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="15183" i_stop="16379" i_length="1197">
            <donor d_prob="1.000" d_score="0.96"/>
            <acceptor a_prob="0.971" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="16380" g_stop="16441" g_length="62"/>
          <reference_exon_boundary r_type="cDNA" r_start="232" r_stop="293" r_length="62" r_score="0.984"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="16442" i_stop="16813" i_length="372">
            <donor d_prob="0.999" d_score="0.98"/>
            <acceptor a_prob="1.000" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="16814" g_stop="16957" g_length="144"/>
          <reference_exon_boundary r_type="cDNA" r_start="294" r_stop="437" r_length="144" r_score="0.965"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0236E02.1" gen_strand="+" ref_id="SGN-E477315" ref_strand="+">
        <total_alignment_score>0.970</total_alignment_score>
        <cumulative_length_of_scored_exons>440</cumulative_length_of_scored_exons>
        <coverage percentage="1.005" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0236E02.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E477315" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="14949" e_stop="15182"/>
          <exon e_start="16380" e_stop="16441"/>
          <exon e_start="16814" e_stop="16957"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TAACAAAGTAGTATAAAGGGCAAGCAAAAGCTAAAGGAAGCTCATTGAGAAATGTCAACTGCTTCCATTAACAATTGCCTTACTCTCTCCCCTGCTCAAGCTTCCCTTAAGAAACCTACTCGTCCCGTTGCCTTCGCAAGGCTTGGCAACTCTTCTTCTTCTTCTTCTATTCCAAGTCTCATCAGAAACGAGCCCGTCTTTGCTGCCCCTACTCCCATCATCAACCCCATTGTGGTACGAATTTTTAACTTACATCACTGTATTTTAATCTGTTATAACAAGTTATTTATATTTGACGTTACTTAATTTATTTTTTAAGCAAGACATTTTTTTTGTCTTATCGTATTTTTTGTAACGACTTGTGTCCATGCATGCTAGTTCACGTGAAAATTCAATATTGGCATAGTTCTAAACTTTAGTTTCTAACCACCTTTATTATTGGTATTGTTATTTTTGGCCATGAATCTCCTGAAGTTAGGTGAATTGATCATGTCGCTCTAAATTGTACACGTCTATTGCGTGTACTCAATGACATATAATATATTATTGCAATCCTAAAATAAGTGTTATTTTAATTTATTTTGAACTCATTAAAATAAATATGATATTTTACTGAGTTACTTATATTTATTACTTTGATTTTTTTGAGTACTAATTTGTATTTTGAAACTTTTAAGATGACGAGAGGGTGGAAATAACAAATTAAATTTGAAAATGAACCAAAATAGAGGTGGCAATTAGGTAGAGGTTCTCGCAAAATGAATATTAAATATGTAGGGCCGTATTGTGAATTATGTGGATAATGTTTTTGCTTTCTATTTTTTTTTAAAAAAAATAATTATTACTTACAATAATCCAACGGGTATCCTCGTATGTGCCCATCCTACAAGTGATAAAATGATAAGTACCAGTCTACCATCAAGTTTGTAGGATAGAAACTATTTAGTATACATTGTTTTTGTCTTAATTTCTAGTTTTGGTATCCATCTAAATCGATACTCCATTATGTTAATTATTTCATTTCTTTCTTTTGACATCTACATCACTTTTTAATGTGGTTACCACTTGCTATAATCATACTTCACTTAGCATTTTATTTGAACTTAGTGAAAGTGAAATTTTTCCTAATAATTGGTCTAAAAATTGAAGAAGATTAAAGCCAAGAAATTGAGTTCTTCCTTCTTTCTTCCAACTTTGAAAGTACCGATAGATACTATCATATAAAAAGAAGAGGTGGTCTGACTAACTCAATGAAGTGAATTTTTCAAAAACATGCTCAGAAAAATGAGAAAAATGGAGTTTTTGAAAAGAAAAATTAACAGATATTTAAAGATAAATTTTTGAAATTTGGTTCAAAATTTATGGTCAAATATTAACTTATATTTATATATATACCTCTTCTAAAATGCTAATGAGAATTAGAATTTGCAGAGAGAAGAAATGGCAAAAGAATCCTACGATCAAGCCATTGCTGCACTCGAGAAACTCCTCAGGTTTGTACTCTCTCTACGACTCTACCTTCTAAATCACACTACTTTTTTCTCGATCAAGTGGGGCCCAAAAAATATACATACACCCACACATACGTAGACAAAAAAAATGTTAAAATTTGCGAATATGCAGAGAAAACATAATATAATCATGCAATGTTTACTCGTAAAATTCAATTTCCCGGCAATGAACATGTTACTTGGTTTCGAGTTCTCCAGATCTGCATTAATTTTACCATTCTATCATCATTTTTTTACCCCATATCTGCATTAATTTATCATGGTAATGGTGCTCAAACCACAAATCTTTTTTTTTTCTACCTGAAATATTGCTTCAATAATAATAATGGTCTAAATTATTTTCTGCAATTACAGCGAGAAAGCAGAACTTGGACCAGTTGCTGCAGCAAGAGTTGACCAGATCACTGCTGAATTGAAATCAGCAGACGGCGGCAAGGCATTCGACCCTGTTGAGCACATGAAAGCTGGCTTTATTCATTTCAAGACTGAGAAATATGA</genome_strand>
        <mrna_strand>TAACAAAGTAATATAAAGGGCAAGCAAAAGCTAAAGGAAGCTCATTGAGAAATGTCAACTGCTTCCATTAACAATTGCCTTACTATCTCCCCTGCTCAAGCTTCCCTTAAGAAACCTACTCGTCCCGTTGCCTTCGCAAGGCTTGGCAACTCTTCTTC-TC--CTTCTATTCCAAGTCTCATCAGAAACGAGCCCGTCTTTGCTGCTCCTACTCGCATCATCAACCCCATTGTG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGAGAAGAAATGGCAAAAGAATCCTACGATCAGGCCATTGCTGCACTCGAGAAACTCCTCAG....................................................................................................................................................................................................................................................................................................................................................................................CGAGAAAGCAGAACTTGGACCAGTTGCTGCAGCAAGAGTTGACCAGATTACTGCTGAATTGAAATCAGCAGATGGAAGCAAGGCCTTCGACCCTGTTGAGCACATGAAAGCTGGCTTTATTCATTTCAAGACTGAGAAATATGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0236E02-u8qcS/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E471587" ref_strand="+" ref_description="SGN-E471587 [cSTB-24-F5]">
      <seq>taacaaagtagtataaagggcaagcaaaagccaaaggaagctcattgagaaatgtcaactgcttccattaacaattgccttactatctcccctgctcaagcttcccttaagaaacctactcgtcccgttgccttcgcaaggcttggcaactcttcttcttcttcttctattccaagtctcatcagaaacgagcccgtcttcgctgcccctactcccatcatcaaccccattgtgagagaagaaatggcaaaagaatcctacgatcaggccattgctgcactcgagaaactcctcagtgagaaagcagaacttggaccagttgctgcagcaagagttgaccagattactgctgaattgaaatcagcagatggcagcaaggccttcgaccctgttgagcacatgaaagc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0236E02-u8qcS/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0236E02.1" temp_strand="+" temp_description="C02HBa0236E02.1  AC215430.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0236E02 sequenced_by:kribb upload_account_name:korea">
        <position start="14649" stop="17224"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="14949" g_stop="15182" g_length="234"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="234" r_length="234" r_score="0.987"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="15183" i_stop="16379" i_length="1197">
            <donor d_prob="1.000" d_score="0.98"/>
            <acceptor a_prob="0.971" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="16380" g_stop="16441" g_length="62"/>
          <reference_exon_boundary r_type="cDNA" r_start="235" r_stop="296" r_length="62" r_score="0.984"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="16442" i_stop="16813" i_length="372">
            <donor d_prob="0.999" d_score="0.98"/>
            <acceptor a_prob="1.000" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="16814" g_stop="16924" g_length="111"/>
          <reference_exon_boundary r_type="cDNA" r_start="297" r_stop="407" r_length="111" r_score="0.955"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0236E02.1" gen_strand="+" ref_id="SGN-E471587" ref_strand="+">
        <total_alignment_score>0.978</total_alignment_score>
        <cumulative_length_of_scored_exons>407</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0236E02.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E471587" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="14949" e_stop="15182"/>
          <exon e_start="16380" e_stop="16441"/>
          <exon e_start="16814" e_stop="16924"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TAACAAAGTAGTATAAAGGGCAAGCAAAAGCTAAAGGAAGCTCATTGAGAAATGTCAACTGCTTCCATTAACAATTGCCTTACTCTCTCCCCTGCTCAAGCTTCCCTTAAGAAACCTACTCGTCCCGTTGCCTTCGCAAGGCTTGGCAACTCTTCTTCTTCTTCTTCTATTCCAAGTCTCATCAGAAACGAGCCCGTCTTTGCTGCCCCTACTCCCATCATCAACCCCATTGTGGTACGAATTTTTAACTTACATCACTGTATTTTAATCTGTTATAACAAGTTATTTATATTTGACGTTACTTAATTTATTTTTTAAGCAAGACATTTTTTTTGTCTTATCGTATTTTTTGTAACGACTTGTGTCCATGCATGCTAGTTCACGTGAAAATTCAATATTGGCATAGTTCTAAACTTTAGTTTCTAACCACCTTTATTATTGGTATTGTTATTTTTGGCCATGAATCTCCTGAAGTTAGGTGAATTGATCATGTCGCTCTAAATTGTACACGTCTATTGCGTGTACTCAATGACATATAATATATTATTGCAATCCTAAAATAAGTGTTATTTTAATTTATTTTGAACTCATTAAAATAAATATGATATTTTACTGAGTTACTTATATTTATTACTTTGATTTTTTTGAGTACTAATTTGTATTTTGAAACTTTTAAGATGACGAGAGGGTGGAAATAACAAATTAAATTTGAAAATGAACCAAAATAGAGGTGGCAATTAGGTAGAGGTTCTCGCAAAATGAATATTAAATATGTAGGGCCGTATTGTGAATTATGTGGATAATGTTTTTGCTTTCTATTTTTTTTTAAAAAAAATAATTATTACTTACAATAATCCAACGGGTATCCTCGTATGTGCCCATCCTACAAGTGATAAAATGATAAGTACCAGTCTACCATCAAGTTTGTAGGATAGAAACTATTTAGTATACATTGTTTTTGTCTTAATTTCTAGTTTTGGTATCCATCTAAATCGATACTCCATTATGTTAATTATTTCATTTCTTTCTTTTGACATCTACATCACTTTTTAATGTGGTTACCACTTGCTATAATCATACTTCACTTAGCATTTTATTTGAACTTAGTGAAAGTGAAATTTTTCCTAATAATTGGTCTAAAAATTGAAGAAGATTAAAGCCAAGAAATTGAGTTCTTCCTTCTTTCTTCCAACTTTGAAAGTACCGATAGATACTATCATATAAAAAGAAGAGGTGGTCTGACTAACTCAATGAAGTGAATTTTTCAAAAACATGCTCAGAAAAATGAGAAAAATGGAGTTTTTGAAAAGAAAAATTAACAGATATTTAAAGATAAATTTTTGAAATTTGGTTCAAAATTTATGGTCAAATATTAACTTATATTTATATATATACCTCTTCTAAAATGCTAATGAGAATTAGAATTTGCAGAGAGAAGAAATGGCAAAAGAATCCTACGATCAAGCCATTGCTGCACTCGAGAAACTCCTCAGGTTTGTACTCTCTCTACGACTCTACCTTCTAAATCACACTACTTTTTTCTCGATCAAGTGGGGCCCAAAAAATATACATACACCCACACATACGTAGACAAAAAAAATGTTAAAATTTGCGAATATGCAGAGAAAACATAATATAATCATGCAATGTTTACTCGTAAAATTCAATTTCCCGGCAATGAACATGTTACTTGGTTTCGAGTTCTCCAGATCTGCATTAATTTTACCATTCTATCATCATTTTTTTACCCCATATCTGCATTAATTTATCATGGTAATGGTGCTCAAACCACAAATCTTTTTTTTTTCTACCTGAAATATTGCTTCAATAATAATAATGGTCTAAATTATTTTCTGCAATTACAGCGAGAAAGCAGAACTTGGACCAGTTGCTGCAGCAAGAGTTGACCAGATCACTGCTGAATTGAAATCAGCAGACGGCGGCAAGGCATTCGACCCTGTTGAGCACATGAAAGC</genome_strand>
        <mrna_strand>TAACAAAGTAGTATAAAGGGCAAGCAAAAGCCAAAGGAAGCTCATTGAGAAATGTCAACTGCTTCCATTAACAATTGCCTTACTATCTCCCCTGCTCAAGCTTCCCTTAAGAAACCTACTCGTCCCGTTGCCTTCGCAAGGCTTGGCAACTCTTCTTCTTCTTCTTCTATTCCAAGTCTCATCAGAAACGAGCCCGTCTTCGCTGCCCCTACTCCCATCATCAACCCCATTGTG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGAGAAGAAATGGCAAAAGAATCCTACGATCAGGCCATTGCTGCACTCGAGAAACTCCTCAG....................................................................................................................................................................................................................................................................................................................................................................................TGAGAAAGCAGAACTTGGACCAGTTGCTGCAGCAAGAGTTGACCAGATTACTGCTGAATTGAAATCAGCAGATGGCAGCAAGGCCTTCGACCCTGTTGAGCACATGAAAGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0236E02-u8qcS/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E323052" ref_strand="+" ref_description="SGN-E323052 [cTOB-28-M15]">
      <seq>aacaaagtagtataaagggcaagcaaaagctaaaggaagctcattgagaaatgtcaactgcttccattaacaattgccttactctctcccctgctcaagcttcccttaagaaacctactcgtcccgttgccttcgcaaggcttggcaactcttcttcttcttcttctattccaagtctcatcagaaacgagcccgtctttgctgcccctactcccatcatcaaccccattgtgagagaagaaatggcaaaagaatcctacgatcaagccattgctgcactcgagaaactcctcagcgagaaagcagaacttggaccagttgctgcagcaagagttgaccagatcactgctgaattgaaatcagcagacggcggcaaggcattcgaccctgttgagcacatgaaagctggctttattcatttcaagactgagaaatatgacacaaacccagccttatatggtgagctagcaaagggccagagccctaagttcatggttttcgcgtgctctgactcacgagtctgcccatcccatgtccctcacttccaacctggtgaggcattcatggttcgtaacatcgccaacatggtccctgcttatg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0236E02-u8qcS/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0236E02.1" temp_strand="+" temp_description="C02HBa0236E02.1  AC215430.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0236E02 sequenced_by:kribb upload_account_name:korea">
        <position start="14650" stop="17600"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="14950" g_stop="15182" g_length="233"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="233" r_length="233" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="15183" i_stop="16379" i_length="1197">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.971" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="16380" g_stop="16441" g_length="62"/>
          <reference_exon_boundary r_type="cDNA" r_start="234" r_stop="295" r_length="62" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="16442" i_stop="16813" i_length="372">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="16814" g_stop="16957" g_length="144"/>
          <reference_exon_boundary r_type="cDNA" r_start="296" r_stop="439" r_length="144" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="16958" i_stop="17055" i_length="98">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="17056" g_stop="17104" g_length="49"/>
          <reference_exon_boundary r_type="cDNA" r_start="440" r_stop="488" r_length="49" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="17105" i_stop="17188" i_length="84">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.961" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="17189" g_stop="17300" g_length="112"/>
          <reference_exon_boundary r_type="cDNA" r_start="489" r_stop="600" r_length="112" r_score="0.973"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0236E02.1" gen_strand="+" ref_id="SGN-E323052" ref_strand="+">
        <total_alignment_score>0.995</total_alignment_score>
        <cumulative_length_of_scored_exons>600</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0236E02.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E323052" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="14950" e_stop="15182"/>
          <exon e_start="16380" e_stop="16441"/>
          <exon e_start="16814" e_stop="16957"/>
          <exon e_start="17056" e_stop="17104"/>
          <exon e_start="17189" e_stop="17300"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AACAAAGTAGTATAAAGGGCAAGCAAAAGCTAAAGGAAGCTCATTGAGAAATGTCAACTGCTTCCATTAACAATTGCCTTACTCTCTCCCCTGCTCAAGCTTCCCTTAAGAAACCTACTCGTCCCGTTGCCTTCGCAAGGCTTGGCAACTCTTCTTCTTCTTCTTCTATTCCAAGTCTCATCAGAAACGAGCCCGTCTTTGCTGCCCCTACTCCCATCATCAACCCCATTGTGGTACGAATTTTTAACTTACATCACTGTATTTTAATCTGTTATAACAAGTTATTTATATTTGACGTTACTTAATTTATTTTTTAAGCAAGACATTTTTTTTGTCTTATCGTATTTTTTGTAACGACTTGTGTCCATGCATGCTAGTTCACGTGAAAATTCAATATTGGCATAGTTCTAAACTTTAGTTTCTAACCACCTTTATTATTGGTATTGTTATTTTTGGCCATGAATCTCCTGAAGTTAGGTGAATTGATCATGTCGCTCTAAATTGTACACGTCTATTGCGTGTACTCAATGACATATAATATATTATTGCAATCCTAAAATAAGTGTTATTTTAATTTATTTTGAACTCATTAAAATAAATATGATATTTTACTGAGTTACTTATATTTATTACTTTGATTTTTTTGAGTACTAATTTGTATTTTGAAACTTTTAAGATGACGAGAGGGTGGAAATAACAAATTAAATTTGAAAATGAACCAAAATAGAGGTGGCAATTAGGTAGAGGTTCTCGCAAAATGAATATTAAATATGTAGGGCCGTATTGTGAATTATGTGGATAATGTTTTTGCTTTCTATTTTTTTTTAAAAAAAATAATTATTACTTACAATAATCCAACGGGTATCCTCGTATGTGCCCATCCTACAAGTGATAAAATGATAAGTACCAGTCTACCATCAAGTTTGTAGGATAGAAACTATTTAGTATACATTGTTTTTGTCTTAATTTCTAGTTTTGGTATCCATCTAAATCGATACTCCATTATGTTAATTATTTCATTTCTTTCTTTTGACATCTACATCACTTTTTAATGTGGTTACCACTTGCTATAATCATACTTCACTTAGCATTTTATTTGAACTTAGTGAAAGTGAAATTTTTCCTAATAATTGGTCTAAAAATTGAAGAAGATTAAAGCCAAGAAATTGAGTTCTTCCTTCTTTCTTCCAACTTTGAAAGTACCGATAGATACTATCATATAAAAAGAAGAGGTGGTCTGACTAACTCAATGAAGTGAATTTTTCAAAAACATGCTCAGAAAAATGAGAAAAATGGAGTTTTTGAAAAGAAAAATTAACAGATATTTAAAGATAAATTTTTGAAATTTGGTTCAAAATTTATGGTCAAATATTAACTTATATTTATATATATACCTCTTCTAAAATGCTAATGAGAATTAGAATTTGCAGAGAGAAGAAATGGCAAAAGAATCCTACGATCAAGCCATTGCTGCACTCGAGAAACTCCTCAGGTTTGTACTCTCTCTACGACTCTACCTTCTAAATCACACTACTTTTTTCTCGATCAAGTGGGGCCCAAAAAATATACATACACCCACACATACGTAGACAAAAAAAATGTTAAAATTTGCGAATATGCAGAGAAAACATAATATAATCATGCAATGTTTACTCGTAAAATTCAATTTCCCGGCAATGAACATGTTACTTGGTTTCGAGTTCTCCAGATCTGCATTAATTTTACCATTCTATCATCATTTTTTTACCCCATATCTGCATTAATTTATCATGGTAATGGTGCTCAAACCACAAATCTTTTTTTTTTCTACCTGAAATATTGCTTCAATAATAATAATGGTCTAAATTATTTTCTGCAATTACAGCGAGAAAGCAGAACTTGGACCAGTTGCTGCAGCAAGAGTTGACCAGATCACTGCTGAATTGAAATCAGCAGACGGCGGCAAGGCATTCGACCCTGTTGAGCACATGAAAGCTGGCTTTATTCATTTCAAGACTGAGAAATATGAGTAAGCAAATTCATTCAAATTAAAATTTCTGCATATTTGATGTTGTAACATTATTAGTGTCTGATAATTTTTCCTGTTTTCTATTTATGTACCAACAGCACAAACCCAGCCTTATATGGTGAGCTAGCAAAGGGCCAGAGCCCTAAGGTACAAATTCCTTGTTAATTTGTTGTCTAATTTTATGATTTGTACGGTTTCTGATGAGTTCTATTGTCCTAAATGTGTAAACAGTTCATGGTTTTCGCGTGCTCTGACTCACGAGTCTGCCCATCCCATGTCCTCAACTTCCAACCTGGTGAGGCATTCATGGTTCGTAACATCGCCAACATGGTCCCTGCTTATG</genome_strand>
        <mrna_strand>AACAAAGTAGTATAAAGGGCAAGCAAAAGCTAAAGGAAGCTCATTGAGAAATGTCAACTGCTTCCATTAACAATTGCCTTACTCTCTCCCCTGCTCAAGCTTCCCTTAAGAAACCTACTCGTCCCGTTGCCTTCGCAAGGCTTGGCAACTCTTCTTCTTCTTCTTCTATTCCAAGTCTCATCAGAAACGAGCCCGTCTTTGCTGCCCCTACTCCCATCATCAACCCCATTGTG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGAGAAGAAATGGCAAAAGAATCCTACGATCAAGCCATTGCTGCACTCGAGAAACTCCTCAG....................................................................................................................................................................................................................................................................................................................................................................................CGAGAAAGCAGAACTTGGACCAGTTGCTGCAGCAAGAGTTGACCAGATCACTGCTGAATTGAAATCAGCAGACGGCGGCAAGGCATTCGACCCTGTTGAGCACATGAAAGCTGGCTTTATTCATTTCAAGACTGAGAAATATGA..................................................................................................CACAAACCCAGCCTTATATGGTGAGCTAGCAAAGGGCCAGAGCCCTAAG....................................................................................TTCATGGTTTTCGCGTGCTCTGACTCACGAGTCTGCCCATCCCATGTCCCTCACTTCCAACCTGGTGAGGCATTCATGGTTCGTAACATCGCCAACATGGTCCCTGCTTATG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0236E02-u8qcS/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E282086" ref_strand="+" ref_description="SGN-E282086 [cLES-2-P18]">
      <seq>aacaaagtagtataaagggcaagcaaaagctaaaggaagctcattgagaaatgtcaactgcttccattaacaattgccttactctctcccctgctcaagcttcccttaagaaacctactcgtcccgttgccttcgcaaggcttggcaactcttcttcttcttcttctattccaagtctcatcagaaacgagcccgtctttgctgcccctactcccatcatcaaccccattgtgagagaagaaatggcaaaagaatcctacgatcaagccattgctgcactcgagaaactcctcagcgagaaagcagaacttggaccagttgctgcagcaagagttgaccagatcactgctgaattgaaatcagcagacggcggcaaggcattcgaccctgttgagcacatgaaagctggctttattcatttcaagactgagaaatatgacacaaacccagccttatatggtgagctagcaaagggccagagccctaagttcatggttttcgcgtgctctgactca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0236E02-u8qcS/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0236E02.1" temp_strand="+" temp_description="C02HBa0236E02.1  AC215430.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0236E02 sequenced_by:kribb upload_account_name:korea">
        <position start="14650" stop="17515"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="14950" g_stop="15182" g_length="233"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="233" r_length="233" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="15183" i_stop="16379" i_length="1197">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.971" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="16380" g_stop="16441" g_length="62"/>
          <reference_exon_boundary r_type="cDNA" r_start="234" r_stop="295" r_length="62" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="16442" i_stop="16813" i_length="372">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="16814" g_stop="16957" g_length="144"/>
          <reference_exon_boundary r_type="cDNA" r_start="296" r_stop="439" r_length="144" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="16958" i_stop="17055" i_length="98">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="17056" g_stop="17104" g_length="49"/>
          <reference_exon_boundary r_type="cDNA" r_start="440" r_stop="488" r_length="49" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="17105" i_stop="17188" i_length="84">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.961" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="17189" g_stop="17215" g_length="27"/>
          <reference_exon_boundary r_type="cDNA" r_start="489" r_stop="515" r_length="27" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0236E02.1" gen_strand="+" ref_id="SGN-E282086" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>515</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0236E02.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E282086" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="14950" e_stop="15182"/>
          <exon e_start="16380" e_stop="16441"/>
          <exon e_start="16814" e_stop="16957"/>
          <exon e_start="17056" e_stop="17104"/>
          <exon e_start="17189" e_stop="17215"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AACAAAGTAGTATAAAGGGCAAGCAAAAGCTAAAGGAAGCTCATTGAGAAATGTCAACTGCTTCCATTAACAATTGCCTTACTCTCTCCCCTGCTCAAGCTTCCCTTAAGAAACCTACTCGTCCCGTTGCCTTCGCAAGGCTTGGCAACTCTTCTTCTTCTTCTTCTATTCCAAGTCTCATCAGAAACGAGCCCGTCTTTGCTGCCCCTACTCCCATCATCAACCCCATTGTGGTACGAATTTTTAACTTACATCACTGTATTTTAATCTGTTATAACAAGTTATTTATATTTGACGTTACTTAATTTATTTTTTAAGCAAGACATTTTTTTTGTCTTATCGTATTTTTTGTAACGACTTGTGTCCATGCATGCTAGTTCACGTGAAAATTCAATATTGGCATAGTTCTAAACTTTAGTTTCTAACCACCTTTATTATTGGTATTGTTATTTTTGGCCATGAATCTCCTGAAGTTAGGTGAATTGATCATGTCGCTCTAAATTGTACACGTCTATTGCGTGTACTCAATGACATATAATATATTATTGCAATCCTAAAATAAGTGTTATTTTAATTTATTTTGAACTCATTAAAATAAATATGATATTTTACTGAGTTACTTATATTTATTACTTTGATTTTTTTGAGTACTAATTTGTATTTTGAAACTTTTAAGATGACGAGAGGGTGGAAATAACAAATTAAATTTGAAAATGAACCAAAATAGAGGTGGCAATTAGGTAGAGGTTCTCGCAAAATGAATATTAAATATGTAGGGCCGTATTGTGAATTATGTGGATAATGTTTTTGCTTTCTATTTTTTTTTAAAAAAAATAATTATTACTTACAATAATCCAACGGGTATCCTCGTATGTGCCCATCCTACAAGTGATAAAATGATAAGTACCAGTCTACCATCAAGTTTGTAGGATAGAAACTATTTAGTATACATTGTTTTTGTCTTAATTTCTAGTTTTGGTATCCATCTAAATCGATACTCCATTATGTTAATTATTTCATTTCTTTCTTTTGACATCTACATCACTTTTTAATGTGGTTACCACTTGCTATAATCATACTTCACTTAGCATTTTATTTGAACTTAGTGAAAGTGAAATTTTTCCTAATAATTGGTCTAAAAATTGAAGAAGATTAAAGCCAAGAAATTGAGTTCTTCCTTCTTTCTTCCAACTTTGAAAGTACCGATAGATACTATCATATAAAAAGAAGAGGTGGTCTGACTAACTCAATGAAGTGAATTTTTCAAAAACATGCTCAGAAAAATGAGAAAAATGGAGTTTTTGAAAAGAAAAATTAACAGATATTTAAAGATAAATTTTTGAAATTTGGTTCAAAATTTATGGTCAAATATTAACTTATATTTATATATATACCTCTTCTAAAATGCTAATGAGAATTAGAATTTGCAGAGAGAAGAAATGGCAAAAGAATCCTACGATCAAGCCATTGCTGCACTCGAGAAACTCCTCAGGTTTGTACTCTCTCTACGACTCTACCTTCTAAATCACACTACTTTTTTCTCGATCAAGTGGGGCCCAAAAAATATACATACACCCACACATACGTAGACAAAAAAAATGTTAAAATTTGCGAATATGCAGAGAAAACATAATATAATCATGCAATGTTTACTCGTAAAATTCAATTTCCCGGCAATGAACATGTTACTTGGTTTCGAGTTCTCCAGATCTGCATTAATTTTACCATTCTATCATCATTTTTTTACCCCATATCTGCATTAATTTATCATGGTAATGGTGCTCAAACCACAAATCTTTTTTTTTTCTACCTGAAATATTGCTTCAATAATAATAATGGTCTAAATTATTTTCTGCAATTACAGCGAGAAAGCAGAACTTGGACCAGTTGCTGCAGCAAGAGTTGACCAGATCACTGCTGAATTGAAATCAGCAGACGGCGGCAAGGCATTCGACCCTGTTGAGCACATGAAAGCTGGCTTTATTCATTTCAAGACTGAGAAATATGAGTAAGCAAATTCATTCAAATTAAAATTTCTGCATATTTGATGTTGTAACATTATTAGTGTCTGATAATTTTTCCTGTTTTCTATTTATGTACCAACAGCACAAACCCAGCCTTATATGGTGAGCTAGCAAAGGGCCAGAGCCCTAAGGTACAAATTCCTTGTTAATTTGTTGTCTAATTTTATGATTTGTACGGTTTCTGATGAGTTCTATTGTCCTAAATGTGTAAACAGTTCATGGTTTTCGCGTGCTCTGACTCA</genome_strand>
        <mrna_strand>AACAAAGTAGTATAAAGGGCAAGCAAAAGCTAAAGGAAGCTCATTGAGAAATGTCAACTGCTTCCATTAACAATTGCCTTACTCTCTCCCCTGCTCAAGCTTCCCTTAAGAAACCTACTCGTCCCGTTGCCTTCGCAAGGCTTGGCAACTCTTCTTCTTCTTCTTCTATTCCAAGTCTCATCAGAAACGAGCCCGTCTTTGCTGCCCCTACTCCCATCATCAACCCCATTGTG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGAGAAGAAATGGCAAAAGAATCCTACGATCAAGCCATTGCTGCACTCGAGAAACTCCTCAG....................................................................................................................................................................................................................................................................................................................................................................................CGAGAAAGCAGAACTTGGACCAGTTGCTGCAGCAAGAGTTGACCAGATCACTGCTGAATTGAAATCAGCAGACGGCGGCAAGGCATTCGACCCTGTTGAGCACATGAAAGCTGGCTTTATTCATTTCAAGACTGAGAAATATGA..................................................................................................CACAAACCCAGCCTTATATGGTGAGCTAGCAAAGGGCCAGAGCCCTAAG....................................................................................TTCATGGTTTTCGCGTGCTCTGACTCA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0236E02-u8qcS/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E365622" ref_strand="+" ref_description="SGN-E365622 [cLPT-12-I14]">
      <seq>aacaagtattataaagggaaagcaaaagctaaaggaagctcattgagaaatgtcaactgcttccattaacaattgccttactctctcccctgctcaagcttcccttaagaaacctactcgtcccgttgccttcgcaaggcttggcaactcttcttcttcttcttcttcttctattccaagtctcatcagaaacgagcccgtctttgctgcccctactcccatcatcaaccccattgtgaatttgcagagagaagaaatggcaaaagaatcctacgatcaggccgttgctgcactcgagaaactcctcagcgagaaagcagaacttggaccagttgctgcagcaagagttgaccagatcactgctgaattgaaatcagcagatggcggcaaggcattcgaccctgttgagcacatgaaagctggctttattcatttcaagactgagaaatatgatacaaacccagccttatatggtgaact</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0236E02-u8qcS/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0236E02.1" temp_strand="+" temp_description="C02HBa0236E02.1  AC215430.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0236E02 sequenced_by:kribb upload_account_name:korea">
        <position start="14650" stop="17382"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="14950" g_stop="15182" g_length="233"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="238" r_length="238" r_score="0.936"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="15183" i_stop="16370" i_length="1188">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.764" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="16371" g_stop="16441" g_length="71"/>
          <reference_exon_boundary r_type="cDNA" r_start="239" r_stop="309" r_length="71" r_score="0.972"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="16442" i_stop="16813" i_length="372">
            <donor d_prob="0.999" d_score="0.96"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="16814" g_stop="16957" g_length="144"/>
          <reference_exon_boundary r_type="cDNA" r_start="310" r_stop="453" r_length="144" r_score="0.993"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="16958" i_stop="17055" i_length="98">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="17056" g_stop="17082" g_length="27"/>
          <reference_exon_boundary r_type="cDNA" r_start="454" r_stop="480" r_length="27" r_score="0.926"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0236E02.1" gen_strand="+" ref_id="SGN-E365622" ref_strand="+">
        <total_alignment_score>0.960</total_alignment_score>
        <cumulative_length_of_scored_exons>475</cumulative_length_of_scored_exons>
        <coverage percentage="0.990" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0236E02.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E365622" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="14950" e_stop="15182"/>
          <exon e_start="16371" e_stop="16441"/>
          <exon e_start="16814" e_stop="16957"/>
          <exon e_start="17056" e_stop="17082"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AACAAAGTAGTATAAAGGGCAAGCAAAAGCTAAAGGAAGCTCATTGAGAAATGTCAACTGCTTCCATTAACAATTGCCTTACTCTCTCCCCTGCTCAAGCTTCCCTTAAGAAACCTACTCGTCCCGTTGCCTTCGCAAGGCTTGGCAA-----C-TCTTCTTCTTCTTCTTCTATTCCAAGTCTCATCAGAAACGAGCCCGTCTTTGCTGCCCCTACTCCCATCATCAACCCCATTGTGGTACGAATTTTTAACTTACATCACTGTATTTTAATCTGTTATAACAAGTTATTTATATTTGACGTTACTTAATTTATTTTTTAAGCAAGACATTTTTTTTGTCTTATCGTATTTTTTGTAACGACTTGTGTCCATGCATGCTAGTTCACGTGAAAATTCAATATTGGCATAGTTCTAAACTTTAGTTTCTAACCACCTTTATTATTGGTATTGTTATTTTTGGCCATGAATCTCCTGAAGTTAGGTGAATTGATCATGTCGCTCTAAATTGTACACGTCTATTGCGTGTACTCAATGACATATAATATATTATTGCAATCCTAAAATAAGTGTTATTTTAATTTATTTTGAACTCATTAAAATAAATATGATATTTTACTGAGTTACTTATATTTATTACTTTGATTTTTTTGAGTACTAATTTGTATTTTGAAACTTTTAAGATGACGAGAGGGTGGAAATAACAAATTAAATTTGAAAATGAACCAAAATAGAGGTGGCAATTAGGTAGAGGTTCTCGCAAAATGAATATTAAATATGTAGGGCCGTATTGTGAATTATGTGGATAATGTTTTTGCTTTCTATTTTTTTTTAAAAAAAATAATTATTACTTACAATAATCCAACGGGTATCCTCGTATGTGCCCATCCTACAAGTGATAAAATGATAAGTACCAGTCTACCATCAAGTTTGTAGGATAGAAACTATTTAGTATACATTGTTTTTGTCTTAATTTCTAGTTTTGGTATCCATCTAAATCGATACTCCATTATGTTAATTATTTCATTTCTTTCTTTTGACATCTACATCACTTTTTAATGTGGTTACCACTTGCTATAATCATACTTCACTTAGCATTTTATTTGAACTTAGTGAAAGTGAAATTTTTCCTAATAATTGGTCTAAAAATTGAAGAAGATTAAAGCCAAGAAATTGAGTTCTTCCTTCTTTCTTCCAACTTTGAAAGTACCGATAGATACTATCATATAAAAAGAAGAGGTGGTCTGACTAACTCAATGAAGTGAATTTTTCAAAAACATGCTCAGAAAAATGAGAAAAATGGAGTTTTTGAAAAGAAAAATTAACAGATATTTAAAGATAAATTTTTGAAATTTGGTTCAAAATTTATGGTCAAATATTAACTTATATTTATATATATACCTCTTCTAAAATGCTAATGAGAATTAGAATTTGCAGAGAGAAGAAATGGCAAAAGAATCCTACGATCAAGCCATTGCTGCACTCGAGAAACTCCTCAGGTTTGTACTCTCTCTACGACTCTACCTTCTAAATCACACTACTTTTTTCTCGATCAAGTGGGGCCCAAAAAATATACATACACCCACACATACGTAGACAAAAAAAATGTTAAAATTTGCGAATATGCAGAGAAAACATAATATAATCATGCAATGTTTACTCGTAAAATTCAATTTCCCGGCAATGAACATGTTACTTGGTTTCGAGTTCTCCAGATCTGCATTAATTTTACCATTCTATCATCATTTTTTTACCCCATATCTGCATTAATTTATCATGGTAATGGTGCTCAAACCACAAATCTTTTTTTTTTCTACCTGAAATATTGCTTCAATAATAATAATGGTCTAAATTATTTTCTGCAATTACAGCGAGAAAGCAGAACTTGGACCAGTTGCTGCAGCAAGAGTTGACCAGATCACTGCTGAATTGAAATCAGCAGACGGCGGCAAGGCATTCGACCCTGTTGAGCACATGAAAGCTGGCTTTATTCATTTCAAGACTGAGAAATATGAGTAAGCAAATTCATTCAAATTAAAATTTCTGCATATTTGATGTTGTAACATTATTAGTGTCTGATAATTTTTCCTGTTTTCTATTTATGTACCAACAGCACAAACCCAGCCTTATATGGTGAGCT</genome_strand>
        <mrna_strand>AACAA-GTATTATAAAGGGAAAGCAAAAGCTAAAGGAAGCTCATTGAGAAATGTCAACTGCTTCCATTAACAATTGCCTTACTCTCTCCCCTGCTCAAGCTTCCCTTAAGAAACCTACTCGTCCCGTTGCCTTCGCAAGGCTTGGCAACTCTTCTTCTTCTTCTTCTTCTTCTATTCCAAGTCTCATCAGAAACGAGCCCGTCTTTGCTGCCCCTACTCCCATCATCAACCCCATTGTG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AATTTGCAGAGAGAAGAAATGGCAAAAGAATCCTACGATCAGGCCGTTGCTGCACTCGAGAAACTCCTCAG....................................................................................................................................................................................................................................................................................................................................................................................CGAGAAAGCAGAACTTGGACCAGTTGCTGCAGCAAGAGTTGACCAGATCACTGCTGAATTGAAATCAGCAGATGGCGGCAAGGCATTCGACCCTGTTGAGCACATGAAAGCTGGCTTTATTCATTTCAAGACTGAGAAATATGA..................................................................................................TACAAACCCAGCCTTATATGGTGAACT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0236E02-u8qcS/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E468779" ref_strand="+" ref_description="SGN-E468779 [cSTB-6-I11]">
      <seq>gcaaagtagtataaagggccaagcaaaagccaaaggaagctcattgagaaatgtcaacctgcttccattaaccaattgccttactatctcccctgctcaagccttcccttaagaaacctactcgtcccgttgccttcgcaaggcttggcaacctcttcttcttcttcttctattccaagtctcatcagaaaccgagcccgtcttcgctgcccctactcccatcatcaaccccattgtgagagaagaaatggcaaaagaatcctaccgatcaggccattgctgcacctcgagaaactcctcagtgagaaagcagaacttggaccagttgctgcagcaagagttgaccagattacctgctgaattgaaatcagcagatggcagcaaggccttcgaccctgttgagccaccatgaaagctggctttattcatttcaaaactgagaaatatga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0236E02-u8qcS/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0236E02.1" temp_strand="+" temp_description="C02HBa0236E02.1  AC215430.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0236E02 sequenced_by:kribb upload_account_name:korea">
        <position start="14652" stop="17257"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="14951" g_stop="15182" g_length="232"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="238" r_length="238" r_score="0.931"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="15183" i_stop="16379" i_length="1197">
            <donor d_prob="1.000" d_score="0.94"/>
            <acceptor a_prob="0.971" a_score="0.90"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="16380" g_stop="16441" g_length="62"/>
          <reference_exon_boundary r_type="cDNA" r_start="239" r_stop="302" r_length="64" r_score="0.919"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="16442" i_stop="16813" i_length="372">
            <donor d_prob="0.999" d_score="0.90"/>
            <acceptor a_prob="1.000" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="16814" g_stop="16957" g_length="144"/>
          <reference_exon_boundary r_type="cDNA" r_start="303" r_stop="449" r_length="147" r_score="0.917"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0236E02.1" gen_strand="+" ref_id="SGN-E468779" ref_strand="+">
        <total_alignment_score>0.925</total_alignment_score>
        <cumulative_length_of_scored_exons>438</cumulative_length_of_scored_exons>
        <coverage percentage="0.976" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0236E02.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E468779" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="14951" e_stop="15182"/>
          <exon e_start="16380" e_stop="16441"/>
          <exon e_start="16814" e_stop="16957"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACAAAGTAGTATAAAGGG-CAAGCAAAAGCTAAAGGAAGCTCATTGAGAAATGTCAA-CTGCTTCCATTAA-CAATTGCCTTACTCTCTCCCCTGCTCAAG-CTTCCCTTAAGAAACCTACTCGTCCCGTTGCCTTCGCAAGGCTTGGCAA-CTCTTCTTCTTCTTCTTCTATTCCAAGTCTCATCAGAAA-CGAGCCCGTCTTTGCTGCCCCTACTCCCATCATCAACCCCATTGTGGTACGAATTTTTAACTTACATCACTGTATTTTAATCTGTTATAACAAGTTATTTATATTTGACGTTACTTAATTTATTTTTTAAGCAAGACATTTTTTTTGTCTTATCGTATTTTTTGTAACGACTTGTGTCCATGCATGCTAGTTCACGTGAAAATTCAATATTGGCATAGTTCTAAACTTTAGTTTCTAACCACCTTTATTATTGGTATTGTTATTTTTGGCCATGAATCTCCTGAAGTTAGGTGAATTGATCATGTCGCTCTAAATTGTACACGTCTATTGCGTGTACTCAATGACATATAATATATTATTGCAATCCTAAAATAAGTGTTATTTTAATTTATTTTGAACTCATTAAAATAAATATGATATTTTACTGAGTTACTTATATTTATTACTTTGATTTTTTTGAGTACTAATTTGTATTTTGAAACTTTTAAGATGACGAGAGGGTGGAAATAACAAATTAAATTTGAAAATGAACCAAAATAGAGGTGGCAATTAGGTAGAGGTTCTCGCAAAATGAATATTAAATATGTAGGGCCGTATTGTGAATTATGTGGATAATGTTTTTGCTTTCTATTTTTTTTTAAAAAAAATAATTATTACTTACAATAATCCAACGGGTATCCTCGTATGTGCCCATCCTACAAGTGATAAAATGATAAGTACCAGTCTACCATCAAGTTTGTAGGATAGAAACTATTTAGTATACATTGTTTTTGTCTTAATTTCTAGTTTTGGTATCCATCTAAATCGATACTCCATTATGTTAATTATTTCATTTCTTTCTTTTGACATCTACATCACTTTTTAATGTGGTTACCACTTGCTATAATCATACTTCACTTAGCATTTTATTTGAACTTAGTGAAAGTGAAATTTTTCCTAATAATTGGTCTAAAAATTGAAGAAGATTAAAGCCAAGAAATTGAGTTCTTCCTTCTTTCTTCCAACTTTGAAAGTACCGATAGATACTATCATATAAAAAGAAGAGGTGGTCTGACTAACTCAATGAAGTGAATTTTTCAAAAACATGCTCAGAAAAATGAGAAAAATGGAGTTTTTGAAAAGAAAAATTAACAGATATTTAAAGATAAATTTTTGAAATTTGGTTCAAAATTTATGGTCAAATATTAACTTATATTTATATATATACCTCTTCTAAAATGCTAATGAGAATTAGAATTTGCAGAGAGAAGAAATGGCAAAAGAATCCTA-CGATCAAGCCATTGCTGCA-CTCGAGAAACTCCTCAGGTTTGTACTCTCTCTACGACTCTACCTTCTAAATCACACTACTTTTTTCTCGATCAAGTGGGGCCCAAAAAATATACATACACCCACACATACGTAGACAAAAAAAATGTTAAAATTTGCGAATATGCAGAGAAAACATAATATAATCATGCAATGTTTACTCGTAAAATTCAATTTCCCGGCAATGAACATGTTACTTGGTTTCGAGTTCTCCAGATCTGCATTAATTTTACCATTCTATCATCATTTTTTTACCCCATATCTGCATTAATTTATCATGGTAATGGTGCTCAAACCACAAATCTTTTTTTTTTCTACCTGAAATATTGCTTCAATAATAATAATGGTCTAAATTATTTTCTGCAATTACAGCGAGAAAGCAGAACTTGGACCAGTTGCTGCAGCAAGAGTTGACCAGATCA-CTGCTGAATTGAAATCAGCAGACGGCGGCAAGGCATTCGACCCTGTTGAG-CA-CATGAAAGCTGGCTTTATTCATTTCAAGACTGAGAAATATGA</genome_strand>
        <mrna_strand>GCAAAGTAGTATAAAGGGCCAAGCAAAAGCCAAAGGAAGCTCATTGAGAAATGTCAACCTGCTTCCATTAACCAATTGCCTTACTATCTCCCCTGCTCAAGCCTTCCCTTAAGAAACCTACTCGTCCCGTTGCCTTCGCAAGGCTTGGCAACCTCTTCTTCTTCTTCTTCTATTCCAAGTCTCATCAGAAACCGAGCCCGTCTTCGCTGCCCCTACTCCCATCATCAACCCCATTGTG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGAGAAGAAATGGCAAAAGAATCCTACCGATCAGGCCATTGCTGCACCTCGAGAAACTCCTCAG....................................................................................................................................................................................................................................................................................................................................................................................TGAGAAAGCAGAACTTGGACCAGTTGCTGCAGCAAGAGTTGACCAGATTACCTGCTGAATTGAAATCAGCAGATGGCAGCAAGGCCTTCGACCCTGTTGAGCCACCATGAAAGCTGGCTTTATTCATTTCAAAACTGAGAAATATGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0236E02-u8qcS/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E736541" ref_strand="+" ref_description="SGN-E736541 [LC06AF08]">
      <seq>caaagtagtataaagggcaagcaaaagctaaaggaagctcattgagaaatgtcaactgcttccattaacaattgccttactctctcccctgctcaagcttcccttaagaaacctactcgtcccgttgccttcgcaaggcttggcaactcttcttcttcttcttctattccaagtctcatcagaaacgagcccgtctttgctgcccctactcccatcatcaaccccattgtgagagaagaaatggcaaaagaatcctacgatcaagccattgctgcactcgagaaactcctcagcgagaaagcagaacttggaccagttgctgcagcaagagttgaccagatcactgctgaattgaaatcagcagacggcggcaaggcattcgaccctgttgagcacatgaaagctggctttattcatttcaagactgagaaatatgacacaaacccagccttatatggtgagctagcaaagggccagagccctaagttcatggttttcgcgtgctctgactcacgagtctgcccatcccatgtcctcaacttccaacctggtgaggcattcatggttcgtaacatcgccaacatggtccctgcttatgacaaggtcaggtactctggagtaggagcagccattgaatacgccgttcttcatcttaaggtggagaacatcgttgtcattggccacagtgcttgtggaggtatcaaaggtctcatgtcactacctgaagatggtagtgaaatcactgcctttattgaggattgggtaaaaatttgtttacctgccaaggcaaaagttctggccgatcacggagggaaagaatttgcacatcaatgcacagcttgtg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0236E02-u8qcS/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0236E02.1" temp_strand="+" temp_description="C02HBa0236E02.1  AC215430.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0236E02 sequenced_by:kribb upload_account_name:korea">
        <position start="14652" stop="18008"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="14952" g_stop="15182" g_length="231"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="231" r_length="231" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="15183" i_stop="16379" i_length="1197">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.971" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="16380" g_stop="16441" g_length="62"/>
          <reference_exon_boundary r_type="cDNA" r_start="232" r_stop="293" r_length="62" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="16442" i_stop="16813" i_length="372">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="16814" g_stop="16957" g_length="144"/>
          <reference_exon_boundary r_type="cDNA" r_start="294" r_stop="437" r_length="144" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="16958" i_stop="17055" i_length="98">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="17056" g_stop="17104" g_length="49"/>
          <reference_exon_boundary r_type="cDNA" r_start="438" r_stop="486" r_length="49" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="17105" i_stop="17188" i_length="84">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.961" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="17189" g_stop="17305" g_length="117"/>
          <reference_exon_boundary r_type="cDNA" r_start="487" r_stop="603" r_length="117" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="17306" i_stop="17390" i_length="85">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.979" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="17391" g_stop="17530" g_length="140"/>
          <reference_exon_boundary r_type="cDNA" r_start="604" r_stop="743" r_length="140" r_score="0.979"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="17531" i_stop="17607" i_length="77">
            <donor d_prob="0.999" d_score="0.94"/>
            <acceptor a_prob="0.948" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="17608" g_stop="17708" g_length="101"/>
          <reference_exon_boundary r_type="cDNA" r_start="744" r_stop="844" r_length="101" r_score="0.990"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0236E02.1" gen_strand="+" ref_id="SGN-E736541" ref_strand="+">
        <total_alignment_score>0.995</total_alignment_score>
        <cumulative_length_of_scored_exons>844</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0236E02.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E736541" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="14952" e_stop="15182"/>
          <exon e_start="16380" e_stop="16441"/>
          <exon e_start="16814" e_stop="16957"/>
          <exon e_start="17056" e_stop="17104"/>
          <exon e_start="17189" e_stop="17305"/>
          <exon e_start="17391" e_stop="17530"/>
          <exon e_start="17608" e_stop="17708"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAAAGTAGTATAAAGGGCAAGCAAAAGCTAAAGGAAGCTCATTGAGAAATGTCAACTGCTTCCATTAACAATTGCCTTACTCTCTCCCCTGCTCAAGCTTCCCTTAAGAAACCTACTCGTCCCGTTGCCTTCGCAAGGCTTGGCAACTCTTCTTCTTCTTCTTCTATTCCAAGTCTCATCAGAAACGAGCCCGTCTTTGCTGCCCCTACTCCCATCATCAACCCCATTGTGGTACGAATTTTTAACTTACATCACTGTATTTTAATCTGTTATAACAAGTTATTTATATTTGACGTTACTTAATTTATTTTTTAAGCAAGACATTTTTTTTGTCTTATCGTATTTTTTGTAACGACTTGTGTCCATGCATGCTAGTTCACGTGAAAATTCAATATTGGCATAGTTCTAAACTTTAGTTTCTAACCACCTTTATTATTGGTATTGTTATTTTTGGCCATGAATCTCCTGAAGTTAGGTGAATTGATCATGTCGCTCTAAATTGTACACGTCTATTGCGTGTACTCAATGACATATAATATATTATTGCAATCCTAAAATAAGTGTTATTTTAATTTATTTTGAACTCATTAAAATAAATATGATATTTTACTGAGTTACTTATATTTATTACTTTGATTTTTTTGAGTACTAATTTGTATTTTGAAACTTTTAAGATGACGAGAGGGTGGAAATAACAAATTAAATTTGAAAATGAACCAAAATAGAGGTGGCAATTAGGTAGAGGTTCTCGCAAAATGAATATTAAATATGTAGGGCCGTATTGTGAATTATGTGGATAATGTTTTTGCTTTCTATTTTTTTTTAAAAAAAATAATTATTACTTACAATAATCCAACGGGTATCCTCGTATGTGCCCATCCTACAAGTGATAAAATGATAAGTACCAGTCTACCATCAAGTTTGTAGGATAGAAACTATTTAGTATACATTGTTTTTGTCTTAATTTCTAGTTTTGGTATCCATCTAAATCGATACTCCATTATGTTAATTATTTCATTTCTTTCTTTTGACATCTACATCACTTTTTAATGTGGTTACCACTTGCTATAATCATACTTCACTTAGCATTTTATTTGAACTTAGTGAAAGTGAAATTTTTCCTAATAATTGGTCTAAAAATTGAAGAAGATTAAAGCCAAGAAATTGAGTTCTTCCTTCTTTCTTCCAACTTTGAAAGTACCGATAGATACTATCATATAAAAAGAAGAGGTGGTCTGACTAACTCAATGAAGTGAATTTTTCAAAAACATGCTCAGAAAAATGAGAAAAATGGAGTTTTTGAAAAGAAAAATTAACAGATATTTAAAGATAAATTTTTGAAATTTGGTTCAAAATTTATGGTCAAATATTAACTTATATTTATATATATACCTCTTCTAAAATGCTAATGAGAATTAGAATTTGCAGAGAGAAGAAATGGCAAAAGAATCCTACGATCAAGCCATTGCTGCACTCGAGAAACTCCTCAGGTTTGTACTCTCTCTACGACTCTACCTTCTAAATCACACTACTTTTTTCTCGATCAAGTGGGGCCCAAAAAATATACATACACCCACACATACGTAGACAAAAAAAATGTTAAAATTTGCGAATATGCAGAGAAAACATAATATAATCATGCAATGTTTACTCGTAAAATTCAATTTCCCGGCAATGAACATGTTACTTGGTTTCGAGTTCTCCAGATCTGCATTAATTTTACCATTCTATCATCATTTTTTTACCCCATATCTGCATTAATTTATCATGGTAATGGTGCTCAAACCACAAATCTTTTTTTTTTCTACCTGAAATATTGCTTCAATAATAATAATGGTCTAAATTATTTTCTGCAATTACAGCGAGAAAGCAGAACTTGGACCAGTTGCTGCAGCAAGAGTTGACCAGATCACTGCTGAATTGAAATCAGCAGACGGCGGCAAGGCATTCGACCCTGTTGAGCACATGAAAGCTGGCTTTATTCATTTCAAGACTGAGAAATATGAGTAAGCAAATTCATTCAAATTAAAATTTCTGCATATTTGATGTTGTAACATTATTAGTGTCTGATAATTTTTCCTGTTTTCTATTTATGTACCAACAGCACAAACCCAGCCTTATATGGTGAGCTAGCAAAGGGCCAGAGCCCTAAGGTACAAATTCCTTGTTAATTTGTTGTCTAATTTTATGATTTGTACGGTTTCTGATGAGTTCTATTGTCCTAAATGTGTAAACAGTTCATGGTTTTCGCGTGCTCTGACTCACGAGTCTGCCCATCCCATGTCCTCAACTTCCAACCTGGTGAGGCATTCATGGTTCGTAACATCGCCAACATGGTCCCTGCTTATGACAAGGTCAGTTACAAATCGATCAACTAGTCGATTATTTCGCTCTGGAATTGTGTTTTTTAAAAATAAAGATGGAATTGAATTTTTACAGGTCAGGTACTCTGGAGTAGGAGCAGCCATTGAATACGCCGTTCTTCATCTTAAGGTGGAGAACATCGTTGTCATTGGCCACAGTGCTTGTGGAGGTATCAAAGGTCTCATGTCACTACCTGAAGATGGTAGTGAATCAACGTACGTCACTCTATAAATCTATTCATTCAAAACACTTATCCTTAACAGATGATTGATTAATAATCTAATATACGCAGTGCCTTTATTGAGGATTGGGTAAAAATTTGTTTACCTGCCAAGGCAAAGGTTCTGGCCGATCACGGAGGGAAAGAATTTGCACATCAATGCACAGCTTGTG</genome_strand>
        <mrna_strand>CAAAGTAGTATAAAGGGCAAGCAAAAGCTAAAGGAAGCTCATTGAGAAATGTCAACTGCTTCCATTAACAATTGCCTTACTCTCTCCCCTGCTCAAGCTTCCCTTAAGAAACCTACTCGTCCCGTTGCCTTCGCAAGGCTTGGCAACTCTTCTTCTTCTTCTTCTATTCCAAGTCTCATCAGAAACGAGCCCGTCTTTGCTGCCCCTACTCCCATCATCAACCCCATTGTG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGAGAAGAAATGGCAAAAGAATCCTACGATCAAGCCATTGCTGCACTCGAGAAACTCCTCAG....................................................................................................................................................................................................................................................................................................................................................................................CGAGAAAGCAGAACTTGGACCAGTTGCTGCAGCAAGAGTTGACCAGATCACTGCTGAATTGAAATCAGCAGACGGCGGCAAGGCATTCGACCCTGTTGAGCACATGAAAGCTGGCTTTATTCATTTCAAGACTGAGAAATATGA..................................................................................................CACAAACCCAGCCTTATATGGTGAGCTAGCAAAGGGCCAGAGCCCTAAG....................................................................................TTCATGGTTTTCGCGTGCTCTGACTCACGAGTCTGCCCATCCCATGTCCTCAACTTCCAACCTGGTGAGGCATTCATGGTTCGTAACATCGCCAACATGGTCCCTGCTTATGACAAG.....................................................................................GTCAGGTACTCTGGAGTAGGAGCAGCCATTGAATACGCCGTTCTTCATCTTAAGGTGGAGAACATCGTTGTCATTGGCCACAGTGCTTGTGGAGGTATCAAAGGTCTCATGTCACTACCTGAAGATGGTAGTGAAATCAC.............................................................................TGCCTTTATTGAGGATTGGGTAAAAATTTGTTTACCTGCCAAGGCAAAAGTTCTGGCCGATCACGGAGGGAAAGAATTTGCACATCAATGCACAGCTTGTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0236E02-u8qcS/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E367785" ref_strand="+" ref_description="SGN-E367785 [cLPT-14-B2]">
      <seq>caaagtagtataaagggaaagcaaaagctaaaggaagctcattgagaaatgtcaactgcttccattaacaattgccttactctctcccctgctcaagcttcccttaagaaacctactcgtcccgttgccttcgcaaggcttggcaactcttcttcttcttcttcttcttctattccaagtctcatcagaaacgagcccgtctttgctgcccctactcccatcatcaaccccattgtgagagaagaaatggcaaaagaatcctacgatcaggccgttgctgcactcgagaaactcctcagcgagaaagcagaacttggaccacttgctgcagcaagagttgaccagatcactgctgaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0236E02-u8qcS/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0236E02.1" temp_strand="+" temp_description="C02HBa0236E02.1  AC215430.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0236E02 sequenced_by:kribb upload_account_name:korea">
        <position start="14652" stop="17171"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="14952" g_stop="15182" g_length="231"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="237" r_length="237" r_score="0.944"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="15183" i_stop="16379" i_length="1197">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.971" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="16380" g_stop="16441" g_length="62"/>
          <reference_exon_boundary r_type="cDNA" r_start="238" r_stop="299" r_length="62" r_score="0.968"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="16442" i_stop="16813" i_length="372">
            <donor d_prob="0.999" d_score="0.96"/>
            <acceptor a_prob="1.000" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="16814" g_stop="16871" g_length="58"/>
          <reference_exon_boundary r_type="cDNA" r_start="300" r_stop="357" r_length="58" r_score="0.983"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0236E02.1" gen_strand="+" ref_id="SGN-E367785" ref_strand="+">
        <total_alignment_score>0.954</total_alignment_score>
        <cumulative_length_of_scored_exons>351</cumulative_length_of_scored_exons>
        <coverage percentage="0.983" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0236E02.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E367785" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="14952" e_stop="15182"/>
          <exon e_start="16380" e_stop="16441"/>
          <exon e_start="16814" e_stop="16871"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAAAGTAGTATAAAGGGCAAGCAAAAGCTAAAGGAAGCTCATTGAGAAATGTCAACTGCTTCCATTAACAATTGCCTTACTCTCTCCCCTGCTCAAGCTTCCCTTAAGAAACCTACTCGTCCCGTTGCCTTCGCAAGGCTTGGCAA-----C-TCTTCTTCTTCTTCTTCTATTCCAAGTCTCATCAGAAACGAGCCCGTCTTTGCTGCCCCTACTCCCATCATCAACCCCATTGTGGTACGAATTTTTAACTTACATCACTGTATTTTAATCTGTTATAACAAGTTATTTATATTTGACGTTACTTAATTTATTTTTTAAGCAAGACATTTTTTTTGTCTTATCGTATTTTTTGTAACGACTTGTGTCCATGCATGCTAGTTCACGTGAAAATTCAATATTGGCATAGTTCTAAACTTTAGTTTCTAACCACCTTTATTATTGGTATTGTTATTTTTGGCCATGAATCTCCTGAAGTTAGGTGAATTGATCATGTCGCTCTAAATTGTACACGTCTATTGCGTGTACTCAATGACATATAATATATTATTGCAATCCTAAAATAAGTGTTATTTTAATTTATTTTGAACTCATTAAAATAAATATGATATTTTACTGAGTTACTTATATTTATTACTTTGATTTTTTTGAGTACTAATTTGTATTTTGAAACTTTTAAGATGACGAGAGGGTGGAAATAACAAATTAAATTTGAAAATGAACCAAAATAGAGGTGGCAATTAGGTAGAGGTTCTCGCAAAATGAATATTAAATATGTAGGGCCGTATTGTGAATTATGTGGATAATGTTTTTGCTTTCTATTTTTTTTTAAAAAAAATAATTATTACTTACAATAATCCAACGGGTATCCTCGTATGTGCCCATCCTACAAGTGATAAAATGATAAGTACCAGTCTACCATCAAGTTTGTAGGATAGAAACTATTTAGTATACATTGTTTTTGTCTTAATTTCTAGTTTTGGTATCCATCTAAATCGATACTCCATTATGTTAATTATTTCATTTCTTTCTTTTGACATCTACATCACTTTTTAATGTGGTTACCACTTGCTATAATCATACTTCACTTAGCATTTTATTTGAACTTAGTGAAAGTGAAATTTTTCCTAATAATTGGTCTAAAAATTGAAGAAGATTAAAGCCAAGAAATTGAGTTCTTCCTTCTTTCTTCCAACTTTGAAAGTACCGATAGATACTATCATATAAAAAGAAGAGGTGGTCTGACTAACTCAATGAAGTGAATTTTTCAAAAACATGCTCAGAAAAATGAGAAAAATGGAGTTTTTGAAAAGAAAAATTAACAGATATTTAAAGATAAATTTTTGAAATTTGGTTCAAAATTTATGGTCAAATATTAACTTATATTTATATATATACCTCTTCTAAAATGCTAATGAGAATTAGAATTTGCAGAGAGAAGAAATGGCAAAAGAATCCTACGATCAAGCCATTGCTGCACTCGAGAAACTCCTCAGGTTTGTACTCTCTCTACGACTCTACCTTCTAAATCACACTACTTTTTTCTCGATCAAGTGGGGCCCAAAAAATATACATACACCCACACATACGTAGACAAAAAAAATGTTAAAATTTGCGAATATGCAGAGAAAACATAATATAATCATGCAATGTTTACTCGTAAAATTCAATTTCCCGGCAATGAACATGTTACTTGGTTTCGAGTTCTCCAGATCTGCATTAATTTTACCATTCTATCATCATTTTTTTACCCCATATCTGCATTAATTTATCATGGTAATGGTGCTCAAACCACAAATCTTTTTTTTTTCTACCTGAAATATTGCTTCAATAATAATAATGGTCTAAATTATTTTCTGCAATTACAGCGAGAAAGCAGAACTTGGACCAGTTGCTGCAGCAAGAGTTGACCAGATCACTGCTGAA</genome_strand>
        <mrna_strand>CAAAGTAGTATAAAGGGAAAGCAAAAGCTAAAGGAAGCTCATTGAGAAATGTCAACTGCTTCCATTAACAATTGCCTTACTCTCTCCCCTGCTCAAGCTTCCCTTAAGAAACCTACTCGTCCCGTTGCCTTCGCAAGGCTTGGCAACTCTTCTTCTTCTTCTTCTTCTTCTATTCCAAGTCTCATCAGAAACGAGCCCGTCTTTGCTGCCCCTACTCCCATCATCAACCCCATTGTG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGAGAAGAAATGGCAAAAGAATCCTACGATCAGGCCGTTGCTGCACTCGAGAAACTCCTCAG....................................................................................................................................................................................................................................................................................................................................................................................CGAGAAAGCAGAACTTGGACCACTTGCTGCAGCAAGAGTTGACCAGATCACTGCTGAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0236E02-u8qcS/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E281776" ref_strand="+" ref_description="SGN-E281776 [cLER-14-B19]">
      <seq>aaagtagtataaagggcaagcaaaagctaaaggaagctcattgagaaatgtcaactgcttccattaacaattgccttactctctcccctgctcaagcttcccttaagaaacctactcgtcccgttgccttcgcaaggcttggcaactcttcttcttcttcttctattccaagtctcatcagaaacgagcccgtctttgctgcccctactcccatcatcaaccccattgtgagagaagaaatggcaaaagaatcctacgatcaagccattgctgcactcgagaaactcctcagcgagaaagcagaacttggaccagttgctgcagcaagagttgaccagatcactgctgaattgaaatcagcagacggcggcaaggcattcgaccctgttgagcacatgaaagctggctttattcatttcaagactgagaaatatgacacaaacccagccttatatggtgagctagcaaagggccagagccctaagttcatggttttcgcgtgctctgactcacgagtc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0236E02-u8qcS/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0236E02.1" temp_strand="+" temp_description="C02HBa0236E02.1  AC215430.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0236E02 sequenced_by:kribb upload_account_name:korea">
        <position start="14653" stop="17521"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="14953" g_stop="15182" g_length="230"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="230" r_length="230" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="15183" i_stop="16379" i_length="1197">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.971" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="16380" g_stop="16441" g_length="62"/>
          <reference_exon_boundary r_type="cDNA" r_start="231" r_stop="292" r_length="62" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="16442" i_stop="16813" i_length="372">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="16814" g_stop="16957" g_length="144"/>
          <reference_exon_boundary r_type="cDNA" r_start="293" r_stop="436" r_length="144" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="16958" i_stop="17055" i_length="98">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="17056" g_stop="17104" g_length="49"/>
          <reference_exon_boundary r_type="cDNA" r_start="437" r_stop="485" r_length="49" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="17105" i_stop="17188" i_length="84">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.961" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="17189" g_stop="17221" g_length="33"/>
          <reference_exon_boundary r_type="cDNA" r_start="486" r_stop="518" r_length="33" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0236E02.1" gen_strand="+" ref_id="SGN-E281776" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>518</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0236E02.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E281776" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="14953" e_stop="15182"/>
          <exon e_start="16380" e_stop="16441"/>
          <exon e_start="16814" e_stop="16957"/>
          <exon e_start="17056" e_stop="17104"/>
          <exon e_start="17189" e_stop="17221"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAGTAGTATAAAGGGCAAGCAAAAGCTAAAGGAAGCTCATTGAGAAATGTCAACTGCTTCCATTAACAATTGCCTTACTCTCTCCCCTGCTCAAGCTTCCCTTAAGAAACCTACTCGTCCCGTTGCCTTCGCAAGGCTTGGCAACTCTTCTTCTTCTTCTTCTATTCCAAGTCTCATCAGAAACGAGCCCGTCTTTGCTGCCCCTACTCCCATCATCAACCCCATTGTGGTACGAATTTTTAACTTACATCACTGTATTTTAATCTGTTATAACAAGTTATTTATATTTGACGTTACTTAATTTATTTTTTAAGCAAGACATTTTTTTTGTCTTATCGTATTTTTTGTAACGACTTGTGTCCATGCATGCTAGTTCACGTGAAAATTCAATATTGGCATAGTTCTAAACTTTAGTTTCTAACCACCTTTATTATTGGTATTGTTATTTTTGGCCATGAATCTCCTGAAGTTAGGTGAATTGATCATGTCGCTCTAAATTGTACACGTCTATTGCGTGTACTCAATGACATATAATATATTATTGCAATCCTAAAATAAGTGTTATTTTAATTTATTTTGAACTCATTAAAATAAATATGATATTTTACTGAGTTACTTATATTTATTACTTTGATTTTTTTGAGTACTAATTTGTATTTTGAAACTTTTAAGATGACGAGAGGGTGGAAATAACAAATTAAATTTGAAAATGAACCAAAATAGAGGTGGCAATTAGGTAGAGGTTCTCGCAAAATGAATATTAAATATGTAGGGCCGTATTGTGAATTATGTGGATAATGTTTTTGCTTTCTATTTTTTTTTAAAAAAAATAATTATTACTTACAATAATCCAACGGGTATCCTCGTATGTGCCCATCCTACAAGTGATAAAATGATAAGTACCAGTCTACCATCAAGTTTGTAGGATAGAAACTATTTAGTATACATTGTTTTTGTCTTAATTTCTAGTTTTGGTATCCATCTAAATCGATACTCCATTATGTTAATTATTTCATTTCTTTCTTTTGACATCTACATCACTTTTTAATGTGGTTACCACTTGCTATAATCATACTTCACTTAGCATTTTATTTGAACTTAGTGAAAGTGAAATTTTTCCTAATAATTGGTCTAAAAATTGAAGAAGATTAAAGCCAAGAAATTGAGTTCTTCCTTCTTTCTTCCAACTTTGAAAGTACCGATAGATACTATCATATAAAAAGAAGAGGTGGTCTGACTAACTCAATGAAGTGAATTTTTCAAAAACATGCTCAGAAAAATGAGAAAAATGGAGTTTTTGAAAAGAAAAATTAACAGATATTTAAAGATAAATTTTTGAAATTTGGTTCAAAATTTATGGTCAAATATTAACTTATATTTATATATATACCTCTTCTAAAATGCTAATGAGAATTAGAATTTGCAGAGAGAAGAAATGGCAAAAGAATCCTACGATCAAGCCATTGCTGCACTCGAGAAACTCCTCAGGTTTGTACTCTCTCTACGACTCTACCTTCTAAATCACACTACTTTTTTCTCGATCAAGTGGGGCCCAAAAAATATACATACACCCACACATACGTAGACAAAAAAAATGTTAAAATTTGCGAATATGCAGAGAAAACATAATATAATCATGCAATGTTTACTCGTAAAATTCAATTTCCCGGCAATGAACATGTTACTTGGTTTCGAGTTCTCCAGATCTGCATTAATTTTACCATTCTATCATCATTTTTTTACCCCATATCTGCATTAATTTATCATGGTAATGGTGCTCAAACCACAAATCTTTTTTTTTTCTACCTGAAATATTGCTTCAATAATAATAATGGTCTAAATTATTTTCTGCAATTACAGCGAGAAAGCAGAACTTGGACCAGTTGCTGCAGCAAGAGTTGACCAGATCACTGCTGAATTGAAATCAGCAGACGGCGGCAAGGCATTCGACCCTGTTGAGCACATGAAAGCTGGCTTTATTCATTTCAAGACTGAGAAATATGAGTAAGCAAATTCATTCAAATTAAAATTTCTGCATATTTGATGTTGTAACATTATTAGTGTCTGATAATTTTTCCTGTTTTCTATTTATGTACCAACAGCACAAACCCAGCCTTATATGGTGAGCTAGCAAAGGGCCAGAGCCCTAAGGTACAAATTCCTTGTTAATTTGTTGTCTAATTTTATGATTTGTACGGTTTCTGATGAGTTCTATTGTCCTAAATGTGTAAACAGTTCATGGTTTTCGCGTGCTCTGACTCACGAGTC</genome_strand>
        <mrna_strand>AAAGTAGTATAAAGGGCAAGCAAAAGCTAAAGGAAGCTCATTGAGAAATGTCAACTGCTTCCATTAACAATTGCCTTACTCTCTCCCCTGCTCAAGCTTCCCTTAAGAAACCTACTCGTCCCGTTGCCTTCGCAAGGCTTGGCAACTCTTCTTCTTCTTCTTCTATTCCAAGTCTCATCAGAAACGAGCCCGTCTTTGCTGCCCCTACTCCCATCATCAACCCCATTGTG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGAGAAGAAATGGCAAAAGAATCCTACGATCAAGCCATTGCTGCACTCGAGAAACTCCTCAG....................................................................................................................................................................................................................................................................................................................................................................................CGAGAAAGCAGAACTTGGACCAGTTGCTGCAGCAAGAGTTGACCAGATCACTGCTGAATTGAAATCAGCAGACGGCGGCAAGGCATTCGACCCTGTTGAGCACATGAAAGCTGGCTTTATTCATTTCAAGACTGAGAAATATGA..................................................................................................CACAAACCCAGCCTTATATGGTGAGCTAGCAAAGGGCCAGAGCCCTAAG....................................................................................TTCATGGTTTTCGCGTGCTCTGACTCACGAGTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0236E02-u8qcS/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E476118" ref_strand="+" ref_description="SGN-E476118 [cSTB-43-K10]">
      <seq>aaagtagtataaaggtcaagcaaaagctaaaggaagctcattgagacatgtcaactgcttccattaacaattgccttactatctcccctgctcaagcttcccttaagaaacctactcgtcccgttgccttcgcaaggcttggcaactcttcttcttcttctattccaagtctcatcagaaacgagcccgtcttcgctgcccctactcccatcatcaaccccattgtgagagaagaaatggcaaaagaatcatacgatcaggccattgctgcactcgagaaactcctcagcgagaaggcagaacttggaccagttgctgcagcaagagttgaccagattactgctgaattgaaatcagcagatggcagcaaagccttcgaccctgttgagcacatgaaagctggctttattcatttcaagactgagaaatatgatacaaaccc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0236E02-u8qcS/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0236E02.1" temp_strand="+" temp_description="C02HBa0236E02.1  AC215430.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0236E02 sequenced_by:kribb upload_account_name:korea">
        <position start="14653" stop="17260"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="14953" g_stop="15182" g_length="230"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="227" r_length="227" r_score="0.970"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="15183" i_stop="16379" i_length="1197">
            <donor d_prob="1.000" d_score="0.98"/>
            <acceptor a_prob="0.971" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="16380" g_stop="16441" g_length="62"/>
          <reference_exon_boundary r_type="cDNA" r_start="228" r_stop="289" r_length="62" r_score="0.968"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="16442" i_stop="16813" i_length="372">
            <donor d_prob="0.999" d_score="0.96"/>
            <acceptor a_prob="1.000" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="16814" g_stop="16957" g_length="144"/>
          <reference_exon_boundary r_type="cDNA" r_start="290" r_stop="433" r_length="144" r_score="0.958"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="16958" i_stop="17055" i_length="98">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="17056" g_stop="17064" g_length="9"/>
          <reference_exon_boundary r_type="cDNA" r_start="434" r_stop="442" r_length="9" r_score="0.889"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0236E02.1" gen_strand="+" ref_id="SGN-E476118" ref_strand="+">
        <total_alignment_score>0.966</total_alignment_score>
        <cumulative_length_of_scored_exons>445</cumulative_length_of_scored_exons>
        <coverage percentage="1.007" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0236E02.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E476118" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="14953" e_stop="15182"/>
          <exon e_start="16380" e_stop="16441"/>
          <exon e_start="16814" e_stop="16957"/>
          <exon e_start="17056" e_stop="17064"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAGTAGTATAAAGGGCAAGCAAAAGCTAAAGGAAGCTCATTGAGAAATGTCAACTGCTTCCATTAACAATTGCCTTACTCTCTCCCCTGCTCAAGCTTCCCTTAAGAAACCTACTCGTCCCGTTGCCTTCGCAAGGCTTGGCAACTCTTCTTCTTCTTCTTCTATTCCAAGTCTCATCAGAAACGAGCCCGTCTTTGCTGCCCCTACTCCCATCATCAACCCCATTGTGGTACGAATTTTTAACTTACATCACTGTATTTTAATCTGTTATAACAAGTTATTTATATTTGACGTTACTTAATTTATTTTTTAAGCAAGACATTTTTTTTGTCTTATCGTATTTTTTGTAACGACTTGTGTCCATGCATGCTAGTTCACGTGAAAATTCAATATTGGCATAGTTCTAAACTTTAGTTTCTAACCACCTTTATTATTGGTATTGTTATTTTTGGCCATGAATCTCCTGAAGTTAGGTGAATTGATCATGTCGCTCTAAATTGTACACGTCTATTGCGTGTACTCAATGACATATAATATATTATTGCAATCCTAAAATAAGTGTTATTTTAATTTATTTTGAACTCATTAAAATAAATATGATATTTTACTGAGTTACTTATATTTATTACTTTGATTTTTTTGAGTACTAATTTGTATTTTGAAACTTTTAAGATGACGAGAGGGTGGAAATAACAAATTAAATTTGAAAATGAACCAAAATAGAGGTGGCAATTAGGTAGAGGTTCTCGCAAAATGAATATTAAATATGTAGGGCCGTATTGTGAATTATGTGGATAATGTTTTTGCTTTCTATTTTTTTTTAAAAAAAATAATTATTACTTACAATAATCCAACGGGTATCCTCGTATGTGCCCATCCTACAAGTGATAAAATGATAAGTACCAGTCTACCATCAAGTTTGTAGGATAGAAACTATTTAGTATACATTGTTTTTGTCTTAATTTCTAGTTTTGGTATCCATCTAAATCGATACTCCATTATGTTAATTATTTCATTTCTTTCTTTTGACATCTACATCACTTTTTAATGTGGTTACCACTTGCTATAATCATACTTCACTTAGCATTTTATTTGAACTTAGTGAAAGTGAAATTTTTCCTAATAATTGGTCTAAAAATTGAAGAAGATTAAAGCCAAGAAATTGAGTTCTTCCTTCTTTCTTCCAACTTTGAAAGTACCGATAGATACTATCATATAAAAAGAAGAGGTGGTCTGACTAACTCAATGAAGTGAATTTTTCAAAAACATGCTCAGAAAAATGAGAAAAATGGAGTTTTTGAAAAGAAAAATTAACAGATATTTAAAGATAAATTTTTGAAATTTGGTTCAAAATTTATGGTCAAATATTAACTTATATTTATATATATACCTCTTCTAAAATGCTAATGAGAATTAGAATTTGCAGAGAGAAGAAATGGCAAAAGAATCCTACGATCAAGCCATTGCTGCACTCGAGAAACTCCTCAGGTTTGTACTCTCTCTACGACTCTACCTTCTAAATCACACTACTTTTTTCTCGATCAAGTGGGGCCCAAAAAATATACATACACCCACACATACGTAGACAAAAAAAATGTTAAAATTTGCGAATATGCAGAGAAAACATAATATAATCATGCAATGTTTACTCGTAAAATTCAATTTCCCGGCAATGAACATGTTACTTGGTTTCGAGTTCTCCAGATCTGCATTAATTTTACCATTCTATCATCATTTTTTTACCCCATATCTGCATTAATTTATCATGGTAATGGTGCTCAAACCACAAATCTTTTTTTTTTCTACCTGAAATATTGCTTCAATAATAATAATGGTCTAAATTATTTTCTGCAATTACAGCGAGAAAGCAGAACTTGGACCAGTTGCTGCAGCAAGAGTTGACCAGATCACTGCTGAATTGAAATCAGCAGACGGCGGCAAGGCATTCGACCCTGTTGAGCACATGAAAGCTGGCTTTATTCATTTCAAGACTGAGAAATATGAGTAAGCAAATTCATTCAAATTAAAATTTCTGCATATTTGATGTTGTAACATTATTAGTGTCTGATAATTTTTCCTGTTTTCTATTTATGTACCAACAGCACAAACCC</genome_strand>
        <mrna_strand>AAAGTAGTATAAAGGTCAAGCAAAAGCTAAAGGAAGCTCATTGAGACATGTCAACTGCTTCCATTAACAATTGCCTTACTATCTCCCCTGCTCAAGCTTCCCTTAAGAAACCTACTCGTCCCGTTGCCTTCGCAAGGCTTGGCAA--C-TCTTCTTCTTCTTCTATTCCAAGTCTCATCAGAAACGAGCCCGTCTTCGCTGCCCCTACTCCCATCATCAACCCCATTGTG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGAGAAGAAATGGCAAAAGAATCATACGATCAGGCCATTGCTGCACTCGAGAAACTCCTCAG....................................................................................................................................................................................................................................................................................................................................................................................CGAGAAGGCAGAACTTGGACCAGTTGCTGCAGCAAGAGTTGACCAGATTACTGCTGAATTGAAATCAGCAGATGGCAGCAAAGCCTTCGACCCTGTTGAGCACATGAAAGCTGGCTTTATTCATTTCAAGACTGAGAAATATGA..................................................................................................TACAAACCC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0236E02-u8qcS/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E283886" ref_strand="+" ref_description="SGN-E283886 [cLER-13-C2]">
      <seq>gtagtataaagggcaagcaaaagctaaaggaagctcattgagaaatgtcaactgcttccattaacaattgccttactctctcccctgctcaagcttcccttaagaaacctactcgtcccgttgccttcgcaaggcttggcaactcttcttcttcttcttctattccaagtctcatcagaaacgagcccgtctttgctgcccctactcccatcatcaaccccattgtgagagaagaaatggcaaaagaatcctacgatcaagccattgctgcactcgagaaactcctcagcgagaaagcagaacttggaccagttgctgcagcaagagttgaccagatcactgctgaattgaaatcagcagacggcggcaaggcattcgaccctgttgagcacatgaaagctggctttattcatttcaagactgagaaatatgacacaaacccagccttatatggtgagctagcaaagggccagagccctaagttcatggttttcgcgtgctctgactcacg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0236E02-u8qcS/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0236E02.1" temp_strand="+" temp_description="C02HBa0236E02.1  AC215430.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0236E02 sequenced_by:kribb upload_account_name:korea">
        <position start="14656" stop="17517"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="14956" g_stop="15182" g_length="227"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="227" r_length="227" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="15183" i_stop="16379" i_length="1197">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.971" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="16380" g_stop="16441" g_length="62"/>
          <reference_exon_boundary r_type="cDNA" r_start="228" r_stop="289" r_length="62" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="16442" i_stop="16813" i_length="372">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="16814" g_stop="16957" g_length="144"/>
          <reference_exon_boundary r_type="cDNA" r_start="290" r_stop="433" r_length="144" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="16958" i_stop="17055" i_length="98">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="17056" g_stop="17104" g_length="49"/>
          <reference_exon_boundary r_type="cDNA" r_start="434" r_stop="482" r_length="49" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="17105" i_stop="17188" i_length="84">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.961" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="17189" g_stop="17217" g_length="29"/>
          <reference_exon_boundary r_type="cDNA" r_start="483" r_stop="511" r_length="29" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0236E02.1" gen_strand="+" ref_id="SGN-E283886" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>511</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0236E02.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E283886" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="14956" e_stop="15182"/>
          <exon e_start="16380" e_stop="16441"/>
          <exon e_start="16814" e_stop="16957"/>
          <exon e_start="17056" e_stop="17104"/>
          <exon e_start="17189" e_stop="17217"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTAGTATAAAGGGCAAGCAAAAGCTAAAGGAAGCTCATTGAGAAATGTCAACTGCTTCCATTAACAATTGCCTTACTCTCTCCCCTGCTCAAGCTTCCCTTAAGAAACCTACTCGTCCCGTTGCCTTCGCAAGGCTTGGCAACTCTTCTTCTTCTTCTTCTATTCCAAGTCTCATCAGAAACGAGCCCGTCTTTGCTGCCCCTACTCCCATCATCAACCCCATTGTGGTACGAATTTTTAACTTACATCACTGTATTTTAATCTGTTATAACAAGTTATTTATATTTGACGTTACTTAATTTATTTTTTAAGCAAGACATTTTTTTTGTCTTATCGTATTTTTTGTAACGACTTGTGTCCATGCATGCTAGTTCACGTGAAAATTCAATATTGGCATAGTTCTAAACTTTAGTTTCTAACCACCTTTATTATTGGTATTGTTATTTTTGGCCATGAATCTCCTGAAGTTAGGTGAATTGATCATGTCGCTCTAAATTGTACACGTCTATTGCGTGTACTCAATGACATATAATATATTATTGCAATCCTAAAATAAGTGTTATTTTAATTTATTTTGAACTCATTAAAATAAATATGATATTTTACTGAGTTACTTATATTTATTACTTTGATTTTTTTGAGTACTAATTTGTATTTTGAAACTTTTAAGATGACGAGAGGGTGGAAATAACAAATTAAATTTGAAAATGAACCAAAATAGAGGTGGCAATTAGGTAGAGGTTCTCGCAAAATGAATATTAAATATGTAGGGCCGTATTGTGAATTATGTGGATAATGTTTTTGCTTTCTATTTTTTTTTAAAAAAAATAATTATTACTTACAATAATCCAACGGGTATCCTCGTATGTGCCCATCCTACAAGTGATAAAATGATAAGTACCAGTCTACCATCAAGTTTGTAGGATAGAAACTATTTAGTATACATTGTTTTTGTCTTAATTTCTAGTTTTGGTATCCATCTAAATCGATACTCCATTATGTTAATTATTTCATTTCTTTCTTTTGACATCTACATCACTTTTTAATGTGGTTACCACTTGCTATAATCATACTTCACTTAGCATTTTATTTGAACTTAGTGAAAGTGAAATTTTTCCTAATAATTGGTCTAAAAATTGAAGAAGATTAAAGCCAAGAAATTGAGTTCTTCCTTCTTTCTTCCAACTTTGAAAGTACCGATAGATACTATCATATAAAAAGAAGAGGTGGTCTGACTAACTCAATGAAGTGAATTTTTCAAAAACATGCTCAGAAAAATGAGAAAAATGGAGTTTTTGAAAAGAAAAATTAACAGATATTTAAAGATAAATTTTTGAAATTTGGTTCAAAATTTATGGTCAAATATTAACTTATATTTATATATATACCTCTTCTAAAATGCTAATGAGAATTAGAATTTGCAGAGAGAAGAAATGGCAAAAGAATCCTACGATCAAGCCATTGCTGCACTCGAGAAACTCCTCAGGTTTGTACTCTCTCTACGACTCTACCTTCTAAATCACACTACTTTTTTCTCGATCAAGTGGGGCCCAAAAAATATACATACACCCACACATACGTAGACAAAAAAAATGTTAAAATTTGCGAATATGCAGAGAAAACATAATATAATCATGCAATGTTTACTCGTAAAATTCAATTTCCCGGCAATGAACATGTTACTTGGTTTCGAGTTCTCCAGATCTGCATTAATTTTACCATTCTATCATCATTTTTTTACCCCATATCTGCATTAATTTATCATGGTAATGGTGCTCAAACCACAAATCTTTTTTTTTTCTACCTGAAATATTGCTTCAATAATAATAATGGTCTAAATTATTTTCTGCAATTACAGCGAGAAAGCAGAACTTGGACCAGTTGCTGCAGCAAGAGTTGACCAGATCACTGCTGAATTGAAATCAGCAGACGGCGGCAAGGCATTCGACCCTGTTGAGCACATGAAAGCTGGCTTTATTCATTTCAAGACTGAGAAATATGAGTAAGCAAATTCATTCAAATTAAAATTTCTGCATATTTGATGTTGTAACATTATTAGTGTCTGATAATTTTTCCTGTTTTCTATTTATGTACCAACAGCACAAACCCAGCCTTATATGGTGAGCTAGCAAAGGGCCAGAGCCCTAAGGTACAAATTCCTTGTTAATTTGTTGTCTAATTTTATGATTTGTACGGTTTCTGATGAGTTCTATTGTCCTAAATGTGTAAACAGTTCATGGTTTTCGCGTGCTCTGACTCACG</genome_strand>
        <mrna_strand>GTAGTATAAAGGGCAAGCAAAAGCTAAAGGAAGCTCATTGAGAAATGTCAACTGCTTCCATTAACAATTGCCTTACTCTCTCCCCTGCTCAAGCTTCCCTTAAGAAACCTACTCGTCCCGTTGCCTTCGCAAGGCTTGGCAACTCTTCTTCTTCTTCTTCTATTCCAAGTCTCATCAGAAACGAGCCCGTCTTTGCTGCCCCTACTCCCATCATCAACCCCATTGTG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGAGAAGAAATGGCAAAAGAATCCTACGATCAAGCCATTGCTGCACTCGAGAAACTCCTCAG....................................................................................................................................................................................................................................................................................................................................................................................CGAGAAAGCAGAACTTGGACCAGTTGCTGCAGCAAGAGTTGACCAGATCACTGCTGAATTGAAATCAGCAGACGGCGGCAAGGCATTCGACCCTGTTGAGCACATGAAAGCTGGCTTTATTCATTTCAAGACTGAGAAATATGA..................................................................................................CACAAACCCAGCCTTATATGGTGAGCTAGCAAAGGGCCAGAGCCCTAAG....................................................................................TTCATGGTTTTCGCGTGCTCTGACTCACG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0236E02-u8qcS/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E283432" ref_strand="+" ref_description="SGN-E283432 [cLER-12-F23]">
      <seq>tagtataaagggcaagcaaaagctaaaggaagctcattgagaaatgtcaactgcttccattaacaattgccttactctctcccctgctcaagcttcccttaagaaacctactcgtcccgttgccttcgcaaggcttggcaactcttcttcttcttcttctattccaagtctcatcagaaacgagcccgtctttgctgcccctactcccatcatcaaccccattgtgagagaagaaatggcaaaagaatcctacgatcaagccattgctgcactcgagaaactcctcagcgagaaagcagaacttggaccagttgctgcagcaagagttgaccagatcactgctgaattgaaatcagcagacggcggcaaggcattcgaccctgttgagcacatgaaagctggctttattcatttcaagactgagaaatatgacacaaacccagccttatatggtgagctagcaaagggccagagccctaagttcatggttttcgcgtgctctgactcacgagtctgcccatcccatgtcctcaac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0236E02-u8qcS/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0236E02.1" temp_strand="+" temp_description="C02HBa0236E02.1  AC215430.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0236E02 sequenced_by:kribb upload_account_name:korea">
        <position start="14657" stop="17542"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="14957" g_stop="15182" g_length="226"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="226" r_length="226" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="15183" i_stop="16379" i_length="1197">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.971" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="16380" g_stop="16441" g_length="62"/>
          <reference_exon_boundary r_type="cDNA" r_start="227" r_stop="288" r_length="62" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="16442" i_stop="16813" i_length="372">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="16814" g_stop="16957" g_length="144"/>
          <reference_exon_boundary r_type="cDNA" r_start="289" r_stop="432" r_length="144" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="16958" i_stop="17055" i_length="98">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="17056" g_stop="17104" g_length="49"/>
          <reference_exon_boundary r_type="cDNA" r_start="433" r_stop="481" r_length="49" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="17105" i_stop="17188" i_length="84">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.961" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="17189" g_stop="17242" g_length="54"/>
          <reference_exon_boundary r_type="cDNA" r_start="482" r_stop="535" r_length="54" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0236E02.1" gen_strand="+" ref_id="SGN-E283432" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>535</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0236E02.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E283432" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="14957" e_stop="15182"/>
          <exon e_start="16380" e_stop="16441"/>
          <exon e_start="16814" e_stop="16957"/>
          <exon e_start="17056" e_stop="17104"/>
          <exon e_start="17189" e_stop="17242"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TAGTATAAAGGGCAAGCAAAAGCTAAAGGAAGCTCATTGAGAAATGTCAACTGCTTCCATTAACAATTGCCTTACTCTCTCCCCTGCTCAAGCTTCCCTTAAGAAACCTACTCGTCCCGTTGCCTTCGCAAGGCTTGGCAACTCTTCTTCTTCTTCTTCTATTCCAAGTCTCATCAGAAACGAGCCCGTCTTTGCTGCCCCTACTCCCATCATCAACCCCATTGTGGTACGAATTTTTAACTTACATCACTGTATTTTAATCTGTTATAACAAGTTATTTATATTTGACGTTACTTAATTTATTTTTTAAGCAAGACATTTTTTTTGTCTTATCGTATTTTTTGTAACGACTTGTGTCCATGCATGCTAGTTCACGTGAAAATTCAATATTGGCATAGTTCTAAACTTTAGTTTCTAACCACCTTTATTATTGGTATTGTTATTTTTGGCCATGAATCTCCTGAAGTTAGGTGAATTGATCATGTCGCTCTAAATTGTACACGTCTATTGCGTGTACTCAATGACATATAATATATTATTGCAATCCTAAAATAAGTGTTATTTTAATTTATTTTGAACTCATTAAAATAAATATGATATTTTACTGAGTTACTTATATTTATTACTTTGATTTTTTTGAGTACTAATTTGTATTTTGAAACTTTTAAGATGACGAGAGGGTGGAAATAACAAATTAAATTTGAAAATGAACCAAAATAGAGGTGGCAATTAGGTAGAGGTTCTCGCAAAATGAATATTAAATATGTAGGGCCGTATTGTGAATTATGTGGATAATGTTTTTGCTTTCTATTTTTTTTTAAAAAAAATAATTATTACTTACAATAATCCAACGGGTATCCTCGTATGTGCCCATCCTACAAGTGATAAAATGATAAGTACCAGTCTACCATCAAGTTTGTAGGATAGAAACTATTTAGTATACATTGTTTTTGTCTTAATTTCTAGTTTTGGTATCCATCTAAATCGATACTCCATTATGTTAATTATTTCATTTCTTTCTTTTGACATCTACATCACTTTTTAATGTGGTTACCACTTGCTATAATCATACTTCACTTAGCATTTTATTTGAACTTAGTGAAAGTGAAATTTTTCCTAATAATTGGTCTAAAAATTGAAGAAGATTAAAGCCAAGAAATTGAGTTCTTCCTTCTTTCTTCCAACTTTGAAAGTACCGATAGATACTATCATATAAAAAGAAGAGGTGGTCTGACTAACTCAATGAAGTGAATTTTTCAAAAACATGCTCAGAAAAATGAGAAAAATGGAGTTTTTGAAAAGAAAAATTAACAGATATTTAAAGATAAATTTTTGAAATTTGGTTCAAAATTTATGGTCAAATATTAACTTATATTTATATATATACCTCTTCTAAAATGCTAATGAGAATTAGAATTTGCAGAGAGAAGAAATGGCAAAAGAATCCTACGATCAAGCCATTGCTGCACTCGAGAAACTCCTCAGGTTTGTACTCTCTCTACGACTCTACCTTCTAAATCACACTACTTTTTTCTCGATCAAGTGGGGCCCAAAAAATATACATACACCCACACATACGTAGACAAAAAAAATGTTAAAATTTGCGAATATGCAGAGAAAACATAATATAATCATGCAATGTTTACTCGTAAAATTCAATTTCCCGGCAATGAACATGTTACTTGGTTTCGAGTTCTCCAGATCTGCATTAATTTTACCATTCTATCATCATTTTTTTACCCCATATCTGCATTAATTTATCATGGTAATGGTGCTCAAACCACAAATCTTTTTTTTTTCTACCTGAAATATTGCTTCAATAATAATAATGGTCTAAATTATTTTCTGCAATTACAGCGAGAAAGCAGAACTTGGACCAGTTGCTGCAGCAAGAGTTGACCAGATCACTGCTGAATTGAAATCAGCAGACGGCGGCAAGGCATTCGACCCTGTTGAGCACATGAAAGCTGGCTTTATTCATTTCAAGACTGAGAAATATGAGTAAGCAAATTCATTCAAATTAAAATTTCTGCATATTTGATGTTGTAACATTATTAGTGTCTGATAATTTTTCCTGTTTTCTATTTATGTACCAACAGCACAAACCCAGCCTTATATGGTGAGCTAGCAAAGGGCCAGAGCCCTAAGGTACAAATTCCTTGTTAATTTGTTGTCTAATTTTATGATTTGTACGGTTTCTGATGAGTTCTATTGTCCTAAATGTGTAAACAGTTCATGGTTTTCGCGTGCTCTGACTCACGAGTCTGCCCATCCCATGTCCTCAAC</genome_strand>
        <mrna_strand>TAGTATAAAGGGCAAGCAAAAGCTAAAGGAAGCTCATTGAGAAATGTCAACTGCTTCCATTAACAATTGCCTTACTCTCTCCCCTGCTCAAGCTTCCCTTAAGAAACCTACTCGTCCCGTTGCCTTCGCAAGGCTTGGCAACTCTTCTTCTTCTTCTTCTATTCCAAGTCTCATCAGAAACGAGCCCGTCTTTGCTGCCCCTACTCCCATCATCAACCCCATTGTG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGAGAAGAAATGGCAAAAGAATCCTACGATCAAGCCATTGCTGCACTCGAGAAACTCCTCAG....................................................................................................................................................................................................................................................................................................................................................................................CGAGAAAGCAGAACTTGGACCAGTTGCTGCAGCAAGAGTTGACCAGATCACTGCTGAATTGAAATCAGCAGACGGCGGCAAGGCATTCGACCCTGTTGAGCACATGAAAGCTGGCTTTATTCATTTCAAGACTGAGAAATATGA..................................................................................................CACAAACCCAGCCTTATATGGTGAGCTAGCAAAGGGCCAGAGCCCTAAG....................................................................................TTCATGGTTTTCGCGTGCTCTGACTCACGAGTCTGCCCATCCCATGTCCTCAAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0236E02-u8qcS/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E365679" ref_strand="+" ref_description="SGN-E365679 [cLPT-8-G7]">
      <seq>taaagggaaagcaaaagctaaaggaagctcattgagaaatgtcaactgcttccattaacaattgccttactctctcccctgctcaagcttcccttaagaaacctactcgtcccgttgccttcgcaaggcttggcaactcttcttcttcttcttcttcttctattccaagtctcatcagaaacgagcccgtctttgctgcccctactcccatcatcaaccccattgtgagagaagaaatggcaaaagaatcctacgatcaggccgttgctgcactcgagaaactcctcagcgagaaagcagaacttggacc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0236E02-u8qcS/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0236E02.1" temp_strand="+" temp_description="C02HBa0236E02.1  AC215430.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0236E02 sequenced_by:kribb upload_account_name:korea">
        <position start="14662" stop="17134"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="14962" g_stop="15182" g_length="221"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="227" r_length="227" r_score="0.941"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="15183" i_stop="16379" i_length="1197">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.971" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="16380" g_stop="16441" g_length="62"/>
          <reference_exon_boundary r_type="cDNA" r_start="228" r_stop="289" r_length="62" r_score="0.968"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="16442" i_stop="16813" i_length="372">
            <donor d_prob="0.999" d_score="0.96"/>
            <acceptor a_prob="1.000" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="16814" g_stop="16834" g_length="21"/>
          <reference_exon_boundary r_type="cDNA" r_start="290" r_stop="310" r_length="21" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0236E02.1" gen_strand="+" ref_id="SGN-E365679" ref_strand="+">
        <total_alignment_score>0.947</total_alignment_score>
        <cumulative_length_of_scored_exons>304</cumulative_length_of_scored_exons>
        <coverage percentage="0.981" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0236E02.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E365679" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="14962" e_stop="15182"/>
          <exon e_start="16380" e_stop="16441"/>
          <exon e_start="16814" e_stop="16834"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TAAAGGGCAAGCAAAAGCTAAAGGAAGCTCATTGAGAAATGTCAACTGCTTCCATTAACAATTGCCTTACTCTCTCCCCTGCTCAAGCTTCCCTTAAGAAACCTACTCGTCCCGTTGCCTTCGCAAGGCTTGGCAA-----C-TCTTCTTCTTCTTCTTCTATTCCAAGTCTCATCAGAAACGAGCCCGTCTTTGCTGCCCCTACTCCCATCATCAACCCCATTGTGGTACGAATTTTTAACTTACATCACTGTATTTTAATCTGTTATAACAAGTTATTTATATTTGACGTTACTTAATTTATTTTTTAAGCAAGACATTTTTTTTGTCTTATCGTATTTTTTGTAACGACTTGTGTCCATGCATGCTAGTTCACGTGAAAATTCAATATTGGCATAGTTCTAAACTTTAGTTTCTAACCACCTTTATTATTGGTATTGTTATTTTTGGCCATGAATCTCCTGAAGTTAGGTGAATTGATCATGTCGCTCTAAATTGTACACGTCTATTGCGTGTACTCAATGACATATAATATATTATTGCAATCCTAAAATAAGTGTTATTTTAATTTATTTTGAACTCATTAAAATAAATATGATATTTTACTGAGTTACTTATATTTATTACTTTGATTTTTTTGAGTACTAATTTGTATTTTGAAACTTTTAAGATGACGAGAGGGTGGAAATAACAAATTAAATTTGAAAATGAACCAAAATAGAGGTGGCAATTAGGTAGAGGTTCTCGCAAAATGAATATTAAATATGTAGGGCCGTATTGTGAATTATGTGGATAATGTTTTTGCTTTCTATTTTTTTTTAAAAAAAATAATTATTACTTACAATAATCCAACGGGTATCCTCGTATGTGCCCATCCTACAAGTGATAAAATGATAAGTACCAGTCTACCATCAAGTTTGTAGGATAGAAACTATTTAGTATACATTGTTTTTGTCTTAATTTCTAGTTTTGGTATCCATCTAAATCGATACTCCATTATGTTAATTATTTCATTTCTTTCTTTTGACATCTACATCACTTTTTAATGTGGTTACCACTTGCTATAATCATACTTCACTTAGCATTTTATTTGAACTTAGTGAAAGTGAAATTTTTCCTAATAATTGGTCTAAAAATTGAAGAAGATTAAAGCCAAGAAATTGAGTTCTTCCTTCTTTCTTCCAACTTTGAAAGTACCGATAGATACTATCATATAAAAAGAAGAGGTGGTCTGACTAACTCAATGAAGTGAATTTTTCAAAAACATGCTCAGAAAAATGAGAAAAATGGAGTTTTTGAAAAGAAAAATTAACAGATATTTAAAGATAAATTTTTGAAATTTGGTTCAAAATTTATGGTCAAATATTAACTTATATTTATATATATACCTCTTCTAAAATGCTAATGAGAATTAGAATTTGCAGAGAGAAGAAATGGCAAAAGAATCCTACGATCAAGCCATTGCTGCACTCGAGAAACTCCTCAGGTTTGTACTCTCTCTACGACTCTACCTTCTAAATCACACTACTTTTTTCTCGATCAAGTGGGGCCCAAAAAATATACATACACCCACACATACGTAGACAAAAAAAATGTTAAAATTTGCGAATATGCAGAGAAAACATAATATAATCATGCAATGTTTACTCGTAAAATTCAATTTCCCGGCAATGAACATGTTACTTGGTTTCGAGTTCTCCAGATCTGCATTAATTTTACCATTCTATCATCATTTTTTTACCCCATATCTGCATTAATTTATCATGGTAATGGTGCTCAAACCACAAATCTTTTTTTTTTCTACCTGAAATATTGCTTCAATAATAATAATGGTCTAAATTATTTTCTGCAATTACAGCGAGAAAGCAGAACTTGGACC</genome_strand>
        <mrna_strand>TAAAGGGAAAGCAAAAGCTAAAGGAAGCTCATTGAGAAATGTCAACTGCTTCCATTAACAATTGCCTTACTCTCTCCCCTGCTCAAGCTTCCCTTAAGAAACCTACTCGTCCCGTTGCCTTCGCAAGGCTTGGCAACTCTTCTTCTTCTTCTTCTTCTTCTATTCCAAGTCTCATCAGAAACGAGCCCGTCTTTGCTGCCCCTACTCCCATCATCAACCCCATTGTG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGAGAAGAAATGGCAAAAGAATCCTACGATCAGGCCGTTGCTGCACTCGAGAAACTCCTCAG....................................................................................................................................................................................................................................................................................................................................................................................CGAGAAAGCAGAACTTGGACC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0236E02-u8qcS/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E288897" ref_strand="+" ref_description="SGN-E288897 [cLES-17-P22]">
      <seq>aaagggcaagcaaaagctaaaggaagctcattgagaaatgtcaactgcttccattaacaattgccttactctctcccctgctcaagcttcccttaagaaacctactcgtcccgttgccttcgcaaggcttggcaactcttcttcttcttcttctattccaagtctcatcagaaacgagcccgtctttgctgcccctactcccatcatcaaccccattgtgagagaagaaatggcaaaagaatcctacgatcaagccattgctgcactcgagaaactcctcagcgagaaagcagaacttggaccagttgctgcagcaagagttgaccagatcactgctgaattgaaatcagcagacggcggcaaggcattctaccctgttgagcacatgaaagctggctttattcatttcaagactgagaaatatgacacaaaccc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0236E02-u8qcS/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0236E02.1" temp_strand="+" temp_description="C02HBa0236E02.1  AC215430.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0236E02 sequenced_by:kribb upload_account_name:korea">
        <position start="14663" stop="17257"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="14963" g_stop="15182" g_length="220"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="220" r_length="220" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="15183" i_stop="16379" i_length="1197">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.971" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="16380" g_stop="16441" g_length="62"/>
          <reference_exon_boundary r_type="cDNA" r_start="221" r_stop="282" r_length="62" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="16442" i_stop="16813" i_length="372">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="16814" g_stop="16957" g_length="144"/>
          <reference_exon_boundary r_type="cDNA" r_start="283" r_stop="426" r_length="144" r_score="0.993"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="16958" i_stop="17055" i_length="98">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="17056" g_stop="17064" g_length="9"/>
          <reference_exon_boundary r_type="cDNA" r_start="427" r_stop="435" r_length="9" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0236E02.1" gen_strand="+" ref_id="SGN-E288897" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>435</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0236E02.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E288897" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="14963" e_stop="15182"/>
          <exon e_start="16380" e_stop="16441"/>
          <exon e_start="16814" e_stop="16957"/>
          <exon e_start="17056" e_stop="17064"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAGGGCAAGCAAAAGCTAAAGGAAGCTCATTGAGAAATGTCAACTGCTTCCATTAACAATTGCCTTACTCTCTCCCCTGCTCAAGCTTCCCTTAAGAAACCTACTCGTCCCGTTGCCTTCGCAAGGCTTGGCAACTCTTCTTCTTCTTCTTCTATTCCAAGTCTCATCAGAAACGAGCCCGTCTTTGCTGCCCCTACTCCCATCATCAACCCCATTGTGGTACGAATTTTTAACTTACATCACTGTATTTTAATCTGTTATAACAAGTTATTTATATTTGACGTTACTTAATTTATTTTTTAAGCAAGACATTTTTTTTGTCTTATCGTATTTTTTGTAACGACTTGTGTCCATGCATGCTAGTTCACGTGAAAATTCAATATTGGCATAGTTCTAAACTTTAGTTTCTAACCACCTTTATTATTGGTATTGTTATTTTTGGCCATGAATCTCCTGAAGTTAGGTGAATTGATCATGTCGCTCTAAATTGTACACGTCTATTGCGTGTACTCAATGACATATAATATATTATTGCAATCCTAAAATAAGTGTTATTTTAATTTATTTTGAACTCATTAAAATAAATATGATATTTTACTGAGTTACTTATATTTATTACTTTGATTTTTTTGAGTACTAATTTGTATTTTGAAACTTTTAAGATGACGAGAGGGTGGAAATAACAAATTAAATTTGAAAATGAACCAAAATAGAGGTGGCAATTAGGTAGAGGTTCTCGCAAAATGAATATTAAATATGTAGGGCCGTATTGTGAATTATGTGGATAATGTTTTTGCTTTCTATTTTTTTTTAAAAAAAATAATTATTACTTACAATAATCCAACGGGTATCCTCGTATGTGCCCATCCTACAAGTGATAAAATGATAAGTACCAGTCTACCATCAAGTTTGTAGGATAGAAACTATTTAGTATACATTGTTTTTGTCTTAATTTCTAGTTTTGGTATCCATCTAAATCGATACTCCATTATGTTAATTATTTCATTTCTTTCTTTTGACATCTACATCACTTTTTAATGTGGTTACCACTTGCTATAATCATACTTCACTTAGCATTTTATTTGAACTTAGTGAAAGTGAAATTTTTCCTAATAATTGGTCTAAAAATTGAAGAAGATTAAAGCCAAGAAATTGAGTTCTTCCTTCTTTCTTCCAACTTTGAAAGTACCGATAGATACTATCATATAAAAAGAAGAGGTGGTCTGACTAACTCAATGAAGTGAATTTTTCAAAAACATGCTCAGAAAAATGAGAAAAATGGAGTTTTTGAAAAGAAAAATTAACAGATATTTAAAGATAAATTTTTGAAATTTGGTTCAAAATTTATGGTCAAATATTAACTTATATTTATATATATACCTCTTCTAAAATGCTAATGAGAATTAGAATTTGCAGAGAGAAGAAATGGCAAAAGAATCCTACGATCAAGCCATTGCTGCACTCGAGAAACTCCTCAGGTTTGTACTCTCTCTACGACTCTACCTTCTAAATCACACTACTTTTTTCTCGATCAAGTGGGGCCCAAAAAATATACATACACCCACACATACGTAGACAAAAAAAATGTTAAAATTTGCGAATATGCAGAGAAAACATAATATAATCATGCAATGTTTACTCGTAAAATTCAATTTCCCGGCAATGAACATGTTACTTGGTTTCGAGTTCTCCAGATCTGCATTAATTTTACCATTCTATCATCATTTTTTTACCCCATATCTGCATTAATTTATCATGGTAATGGTGCTCAAACCACAAATCTTTTTTTTTTCTACCTGAAATATTGCTTCAATAATAATAATGGTCTAAATTATTTTCTGCAATTACAGCGAGAAAGCAGAACTTGGACCAGTTGCTGCAGCAAGAGTTGACCAGATCACTGCTGAATTGAAATCAGCAGACGGCGGCAAGGCATTCGACCCTGTTGAGCACATGAAAGCTGGCTTTATTCATTTCAAGACTGAGAAATATGAGTAAGCAAATTCATTCAAATTAAAATTTCTGCATATTTGATGTTGTAACATTATTAGTGTCTGATAATTTTTCCTGTTTTCTATTTATGTACCAACAGCACAAACCC</genome_strand>
        <mrna_strand>AAAGGGCAAGCAAAAGCTAAAGGAAGCTCATTGAGAAATGTCAACTGCTTCCATTAACAATTGCCTTACTCTCTCCCCTGCTCAAGCTTCCCTTAAGAAACCTACTCGTCCCGTTGCCTTCGCAAGGCTTGGCAACTCTTCTTCTTCTTCTTCTATTCCAAGTCTCATCAGAAACGAGCCCGTCTTTGCTGCCCCTACTCCCATCATCAACCCCATTGTG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGAGAAGAAATGGCAAAAGAATCCTACGATCAAGCCATTGCTGCACTCGAGAAACTCCTCAG....................................................................................................................................................................................................................................................................................................................................................................................CGAGAAAGCAGAACTTGGACCAGTTGCTGCAGCAAGAGTTGACCAGATCACTGCTGAATTGAAATCAGCAGACGGCGGCAAGGCATTCTACCCTGTTGAGCACATGAAAGCTGGCTTTATTCATTTCAAGACTGAGAAATATGA..................................................................................................CACAAACCC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0236E02-u8qcS/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E325877" ref_strand="+" ref_description="SGN-E325877 [cTOC-12-A9]">
      <seq>aagggcatgcaaaagctcaaggaagctcattgagaaatgtcaactgcttccattaacaattgccttactctctcccctgctcaagcttcccttaagaaacctactcgtcccgttgccttcgcaaggcttggcaactcttcttcttcttcttctattccaagtctcatcagaaacgagcccgtctttgctgcccctactcccatcatcaaccccattgtgagagaagaaatggcaaaagaatcctacgatcaagccattgctgcactcgagaaactcctcagcgagaaagcagaacttggaccagttgctgcagcaagagttgaccagatcactgctgaattgaaatcagcagacggcggcaaggcattcgaccctgttgagcacatgaaagctggctttattcatttcaagactgagaaatatgacacaaacccagccttatatggtgagct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0236E02-u8qcS/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0236E02.1" temp_strand="+" temp_description="C02HBa0236E02.1  AC215430.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0236E02 sequenced_by:kribb upload_account_name:korea">
        <position start="14664" stop="17382"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="14964" g_stop="15182" g_length="219"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="219" r_length="219" r_score="0.991"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="15183" i_stop="16379" i_length="1197">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.971" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="16380" g_stop="16441" g_length="62"/>
          <reference_exon_boundary r_type="cDNA" r_start="220" r_stop="281" r_length="62" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="16442" i_stop="16813" i_length="372">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="16814" g_stop="16957" g_length="144"/>
          <reference_exon_boundary r_type="cDNA" r_start="282" r_stop="425" r_length="144" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="16958" i_stop="17055" i_length="98">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="17056" g_stop="17082" g_length="27"/>
          <reference_exon_boundary r_type="cDNA" r_start="426" r_stop="452" r_length="27" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0236E02.1" gen_strand="+" ref_id="SGN-E325877" ref_strand="+">
        <total_alignment_score>0.995</total_alignment_score>
        <cumulative_length_of_scored_exons>452</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0236E02.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E325877" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="14964" e_stop="15182"/>
          <exon e_start="16380" e_stop="16441"/>
          <exon e_start="16814" e_stop="16957"/>
          <exon e_start="17056" e_stop="17082"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAGGGCAAGCAAAAGCTAAAGGAAGCTCATTGAGAAATGTCAACTGCTTCCATTAACAATTGCCTTACTCTCTCCCCTGCTCAAGCTTCCCTTAAGAAACCTACTCGTCCCGTTGCCTTCGCAAGGCTTGGCAACTCTTCTTCTTCTTCTTCTATTCCAAGTCTCATCAGAAACGAGCCCGTCTTTGCTGCCCCTACTCCCATCATCAACCCCATTGTGGTACGAATTTTTAACTTACATCACTGTATTTTAATCTGTTATAACAAGTTATTTATATTTGACGTTACTTAATTTATTTTTTAAGCAAGACATTTTTTTTGTCTTATCGTATTTTTTGTAACGACTTGTGTCCATGCATGCTAGTTCACGTGAAAATTCAATATTGGCATAGTTCTAAACTTTAGTTTCTAACCACCTTTATTATTGGTATTGTTATTTTTGGCCATGAATCTCCTGAAGTTAGGTGAATTGATCATGTCGCTCTAAATTGTACACGTCTATTGCGTGTACTCAATGACATATAATATATTATTGCAATCCTAAAATAAGTGTTATTTTAATTTATTTTGAACTCATTAAAATAAATATGATATTTTACTGAGTTACTTATATTTATTACTTTGATTTTTTTGAGTACTAATTTGTATTTTGAAACTTTTAAGATGACGAGAGGGTGGAAATAACAAATTAAATTTGAAAATGAACCAAAATAGAGGTGGCAATTAGGTAGAGGTTCTCGCAAAATGAATATTAAATATGTAGGGCCGTATTGTGAATTATGTGGATAATGTTTTTGCTTTCTATTTTTTTTTAAAAAAAATAATTATTACTTACAATAATCCAACGGGTATCCTCGTATGTGCCCATCCTACAAGTGATAAAATGATAAGTACCAGTCTACCATCAAGTTTGTAGGATAGAAACTATTTAGTATACATTGTTTTTGTCTTAATTTCTAGTTTTGGTATCCATCTAAATCGATACTCCATTATGTTAATTATTTCATTTCTTTCTTTTGACATCTACATCACTTTTTAATGTGGTTACCACTTGCTATAATCATACTTCACTTAGCATTTTATTTGAACTTAGTGAAAGTGAAATTTTTCCTAATAATTGGTCTAAAAATTGAAGAAGATTAAAGCCAAGAAATTGAGTTCTTCCTTCTTTCTTCCAACTTTGAAAGTACCGATAGATACTATCATATAAAAAGAAGAGGTGGTCTGACTAACTCAATGAAGTGAATTTTTCAAAAACATGCTCAGAAAAATGAGAAAAATGGAGTTTTTGAAAAGAAAAATTAACAGATATTTAAAGATAAATTTTTGAAATTTGGTTCAAAATTTATGGTCAAATATTAACTTATATTTATATATATACCTCTTCTAAAATGCTAATGAGAATTAGAATTTGCAGAGAGAAGAAATGGCAAAAGAATCCTACGATCAAGCCATTGCTGCACTCGAGAAACTCCTCAGGTTTGTACTCTCTCTACGACTCTACCTTCTAAATCACACTACTTTTTTCTCGATCAAGTGGGGCCCAAAAAATATACATACACCCACACATACGTAGACAAAAAAAATGTTAAAATTTGCGAATATGCAGAGAAAACATAATATAATCATGCAATGTTTACTCGTAAAATTCAATTTCCCGGCAATGAACATGTTACTTGGTTTCGAGTTCTCCAGATCTGCATTAATTTTACCATTCTATCATCATTTTTTTACCCCATATCTGCATTAATTTATCATGGTAATGGTGCTCAAACCACAAATCTTTTTTTTTTCTACCTGAAATATTGCTTCAATAATAATAATGGTCTAAATTATTTTCTGCAATTACAGCGAGAAAGCAGAACTTGGACCAGTTGCTGCAGCAAGAGTTGACCAGATCACTGCTGAATTGAAATCAGCAGACGGCGGCAAGGCATTCGACCCTGTTGAGCACATGAAAGCTGGCTTTATTCATTTCAAGACTGAGAAATATGAGTAAGCAAATTCATTCAAATTAAAATTTCTGCATATTTGATGTTGTAACATTATTAGTGTCTGATAATTTTTCCTGTTTTCTATTTATGTACCAACAGCACAAACCCAGCCTTATATGGTGAGCT</genome_strand>
        <mrna_strand>AAGGGCATGCAAAAGCTCAAGGAAGCTCATTGAGAAATGTCAACTGCTTCCATTAACAATTGCCTTACTCTCTCCCCTGCTCAAGCTTCCCTTAAGAAACCTACTCGTCCCGTTGCCTTCGCAAGGCTTGGCAACTCTTCTTCTTCTTCTTCTATTCCAAGTCTCATCAGAAACGAGCCCGTCTTTGCTGCCCCTACTCCCATCATCAACCCCATTGTG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGAGAAGAAATGGCAAAAGAATCCTACGATCAAGCCATTGCTGCACTCGAGAAACTCCTCAG....................................................................................................................................................................................................................................................................................................................................................................................CGAGAAAGCAGAACTTGGACCAGTTGCTGCAGCAAGAGTTGACCAGATCACTGCTGAATTGAAATCAGCAGACGGCGGCAAGGCATTCGACCCTGTTGAGCACATGAAAGCTGGCTTTATTCATTTCAAGACTGAGAAATATGA..................................................................................................CACAAACCCAGCCTTATATGGTGAGCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0236E02-u8qcS/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E285248" ref_strand="+" ref_description="SGN-E285248 [cLER-20-J18]">
      <seq>gcaagcaaaagctaaaggaagctcattgagaaatgtcaactgcttccattaacaattgccttactctctcccctgctcaagcttcccttaagaaacctactcgtcccgttgccttcgcaaggcttggcaactcttcttcttcttcttctattccaagtctcatcagaaacgagcccgtctttgctgcccctactcccatcatcaaccccattgtgagagaagaaatggcaaaagaatcctacgatcaagccattgctgcactcgagaaactcctcagcgagaaagcagaacttggaccagttgctgcagcaagagttgaccagatcactgctgaattgaaatcagcagacggcggcaaggcattcgaccctgttgagcacatgaaagctggctttattcatttcaagactgagaaatatgacacaaacccagccttatatggtgagctagcaaagggccagagccctaagttcatggttttcgcgtgctctgactcacgagtctgcccatcccatgtcctcaacttccaacctggtgaggcattcatggttcgtaacatcgccaacatggtccctgcttatgacaaggtcaggtactctggagtaggagcagccattgaatacgccgttcttcatcttaaggtggagaacatcgttgtcattg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0236E02-u8qcS/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0236E02.1" temp_strand="+" temp_description="C02HBa0236E02.1  AC215430.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0236E02 sequenced_by:kribb upload_account_name:korea">
        <position start="14668" stop="17766"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="14968" g_stop="15182" g_length="215"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="215" r_length="215" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="15183" i_stop="16379" i_length="1197">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.971" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="16380" g_stop="16441" g_length="62"/>
          <reference_exon_boundary r_type="cDNA" r_start="216" r_stop="277" r_length="62" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="16442" i_stop="16813" i_length="372">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="16814" g_stop="16957" g_length="144"/>
          <reference_exon_boundary r_type="cDNA" r_start="278" r_stop="421" r_length="144" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="16958" i_stop="17055" i_length="98">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="17056" g_stop="17104" g_length="49"/>
          <reference_exon_boundary r_type="cDNA" r_start="422" r_stop="470" r_length="49" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="17105" i_stop="17188" i_length="84">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.961" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="17189" g_stop="17305" g_length="117"/>
          <reference_exon_boundary r_type="cDNA" r_start="471" r_stop="587" r_length="117" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="17306" i_stop="17390" i_length="85">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.979" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="17391" g_stop="17466" g_length="76"/>
          <reference_exon_boundary r_type="cDNA" r_start="588" r_stop="663" r_length="76" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0236E02.1" gen_strand="+" ref_id="SGN-E285248" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>663</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0236E02.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E285248" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="14968" e_stop="15182"/>
          <exon e_start="16380" e_stop="16441"/>
          <exon e_start="16814" e_stop="16957"/>
          <exon e_start="17056" e_stop="17104"/>
          <exon e_start="17189" e_stop="17305"/>
          <exon e_start="17391" e_stop="17466"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCAAGCAAAAGCTAAAGGAAGCTCATTGAGAAATGTCAACTGCTTCCATTAACAATTGCCTTACTCTCTCCCCTGCTCAAGCTTCCCTTAAGAAACCTACTCGTCCCGTTGCCTTCGCAAGGCTTGGCAACTCTTCTTCTTCTTCTTCTATTCCAAGTCTCATCAGAAACGAGCCCGTCTTTGCTGCCCCTACTCCCATCATCAACCCCATTGTGGTACGAATTTTTAACTTACATCACTGTATTTTAATCTGTTATAACAAGTTATTTATATTTGACGTTACTTAATTTATTTTTTAAGCAAGACATTTTTTTTGTCTTATCGTATTTTTTGTAACGACTTGTGTCCATGCATGCTAGTTCACGTGAAAATTCAATATTGGCATAGTTCTAAACTTTAGTTTCTAACCACCTTTATTATTGGTATTGTTATTTTTGGCCATGAATCTCCTGAAGTTAGGTGAATTGATCATGTCGCTCTAAATTGTACACGTCTATTGCGTGTACTCAATGACATATAATATATTATTGCAATCCTAAAATAAGTGTTATTTTAATTTATTTTGAACTCATTAAAATAAATATGATATTTTACTGAGTTACTTATATTTATTACTTTGATTTTTTTGAGTACTAATTTGTATTTTGAAACTTTTAAGATGACGAGAGGGTGGAAATAACAAATTAAATTTGAAAATGAACCAAAATAGAGGTGGCAATTAGGTAGAGGTTCTCGCAAAATGAATATTAAATATGTAGGGCCGTATTGTGAATTATGTGGATAATGTTTTTGCTTTCTATTTTTTTTTAAAAAAAATAATTATTACTTACAATAATCCAACGGGTATCCTCGTATGTGCCCATCCTACAAGTGATAAAATGATAAGTACCAGTCTACCATCAAGTTTGTAGGATAGAAACTATTTAGTATACATTGTTTTTGTCTTAATTTCTAGTTTTGGTATCCATCTAAATCGATACTCCATTATGTTAATTATTTCATTTCTTTCTTTTGACATCTACATCACTTTTTAATGTGGTTACCACTTGCTATAATCATACTTCACTTAGCATTTTATTTGAACTTAGTGAAAGTGAAATTTTTCCTAATAATTGGTCTAAAAATTGAAGAAGATTAAAGCCAAGAAATTGAGTTCTTCCTTCTTTCTTCCAACTTTGAAAGTACCGATAGATACTATCATATAAAAAGAAGAGGTGGTCTGACTAACTCAATGAAGTGAATTTTTCAAAAACATGCTCAGAAAAATGAGAAAAATGGAGTTTTTGAAAAGAAAAATTAACAGATATTTAAAGATAAATTTTTGAAATTTGGTTCAAAATTTATGGTCAAATATTAACTTATATTTATATATATACCTCTTCTAAAATGCTAATGAGAATTAGAATTTGCAGAGAGAAGAAATGGCAAAAGAATCCTACGATCAAGCCATTGCTGCACTCGAGAAACTCCTCAGGTTTGTACTCTCTCTACGACTCTACCTTCTAAATCACACTACTTTTTTCTCGATCAAGTGGGGCCCAAAAAATATACATACACCCACACATACGTAGACAAAAAAAATGTTAAAATTTGCGAATATGCAGAGAAAACATAATATAATCATGCAATGTTTACTCGTAAAATTCAATTTCCCGGCAATGAACATGTTACTTGGTTTCGAGTTCTCCAGATCTGCATTAATTTTACCATTCTATCATCATTTTTTTACCCCATATCTGCATTAATTTATCATGGTAATGGTGCTCAAACCACAAATCTTTTTTTTTTCTACCTGAAATATTGCTTCAATAATAATAATGGTCTAAATTATTTTCTGCAATTACAGCGAGAAAGCAGAACTTGGACCAGTTGCTGCAGCAAGAGTTGACCAGATCACTGCTGAATTGAAATCAGCAGACGGCGGCAAGGCATTCGACCCTGTTGAGCACATGAAAGCTGGCTTTATTCATTTCAAGACTGAGAAATATGAGTAAGCAAATTCATTCAAATTAAAATTTCTGCATATTTGATGTTGTAACATTATTAGTGTCTGATAATTTTTCCTGTTTTCTATTTATGTACCAACAGCACAAACCCAGCCTTATATGGTGAGCTAGCAAAGGGCCAGAGCCCTAAGGTACAAATTCCTTGTTAATTTGTTGTCTAATTTTATGATTTGTACGGTTTCTGATGAGTTCTATTGTCCTAAATGTGTAAACAGTTCATGGTTTTCGCGTGCTCTGACTCACGAGTCTGCCCATCCCATGTCCTCAACTTCCAACCTGGTGAGGCATTCATGGTTCGTAACATCGCCAACATGGTCCCTGCTTATGACAAGGTCAGTTACAAATCGATCAACTAGTCGATTATTTCGCTCTGGAATTGTGTTTTTTAAAAATAAAGATGGAATTGAATTTTTACAGGTCAGGTACTCTGGAGTAGGAGCAGCCATTGAATACGCCGTTCTTCATCTTAAGGTGGAGAACATCGTTGTCATTG</genome_strand>
        <mrna_strand>GCAAGCAAAAGCTAAAGGAAGCTCATTGAGAAATGTCAACTGCTTCCATTAACAATTGCCTTACTCTCTCCCCTGCTCAAGCTTCCCTTAAGAAACCTACTCGTCCCGTTGCCTTCGCAAGGCTTGGCAACTCTTCTTCTTCTTCTTCTATTCCAAGTCTCATCAGAAACGAGCCCGTCTTTGCTGCCCCTACTCCCATCATCAACCCCATTGTG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGAGAAGAAATGGCAAAAGAATCCTACGATCAAGCCATTGCTGCACTCGAGAAACTCCTCAG....................................................................................................................................................................................................................................................................................................................................................................................CGAGAAAGCAGAACTTGGACCAGTTGCTGCAGCAAGAGTTGACCAGATCACTGCTGAATTGAAATCAGCAGACGGCGGCAAGGCATTCGACCCTGTTGAGCACATGAAAGCTGGCTTTATTCATTTCAAGACTGAGAAATATGA..................................................................................................CACAAACCCAGCCTTATATGGTGAGCTAGCAAAGGGCCAGAGCCCTAAG....................................................................................TTCATGGTTTTCGCGTGCTCTGACTCACGAGTCTGCCCATCCCATGTCCTCAACTTCCAACCTGGTGAGGCATTCATGGTTCGTAACATCGCCAACATGGTCCCTGCTTATGACAAG.....................................................................................GTCAGGTACTCTGGAGTAGGAGCAGCCATTGAATACGCCGTTCTTCATCTTAAGGTGGAGAACATCGTTGTCATTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0236E02-u8qcS/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E359088" ref_strand="+" ref_description="SGN-E359088 [cLHT-11-P11]">
      <seq>gcaagcaaaagctaaaggaagctcattgagaaatgtcaactgcttccattaacaattgcctcactctctcccctgctcaagcttcccttaagaaacctactcgtcccgttgccttcgcaaggcttggcaactcttcttcttcttcttcttctattccaagtctcatcagaaacgagcccgtctttgctgcccctactcccatcatcaaccccattgtgagagaagaaatggcaaaagaatcctacgatcaggccattgctgcactcgagaaactcctcagcgagaaagcagaacttggaccagttgctgcagcaagagttgatcagatcactgctgaattgaaatcagcagatggcggcaaggcattcgaccctgttgagcacatgaaagctggctttattcatttcaagactgagaaatatgatacaaacccagccttatatggtgaactagcaaagggccagagccctaagttcatggttttcgcgtgctctgactca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0236E02-u8qcS/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0236E02.1" temp_strand="+" temp_description="C02HBa0236E02.1  AC215430.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0236E02 sequenced_by:kribb upload_account_name:korea">
        <position start="14668" stop="17515"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="14968" g_stop="15182" g_length="215"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="218" r_length="218" r_score="0.967"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="15183" i_stop="16379" i_length="1197">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.971" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="16380" g_stop="16441" g_length="62"/>
          <reference_exon_boundary r_type="cDNA" r_start="219" r_stop="280" r_length="62" r_score="0.984"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="16442" i_stop="16813" i_length="372">
            <donor d_prob="0.999" d_score="0.98"/>
            <acceptor a_prob="1.000" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="16814" g_stop="16957" g_length="144"/>
          <reference_exon_boundary r_type="cDNA" r_start="281" r_stop="424" r_length="144" r_score="0.986"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="16958" i_stop="17055" i_length="98">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="17056" g_stop="17104" g_length="49"/>
          <reference_exon_boundary r_type="cDNA" r_start="425" r_stop="473" r_length="49" r_score="0.959"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="17105" i_stop="17188" i_length="84">
            <donor d_prob="1.000" d_score="0.96"/>
            <acceptor a_prob="0.961" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="17189" g_stop="17215" g_length="27"/>
          <reference_exon_boundary r_type="cDNA" r_start="474" r_stop="500" r_length="27" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0236E02.1" gen_strand="+" ref_id="SGN-E359088" ref_strand="+">
        <total_alignment_score>0.976</total_alignment_score>
        <cumulative_length_of_scored_exons>497</cumulative_length_of_scored_exons>
        <coverage percentage="0.994" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0236E02.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E359088" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="14968" e_stop="15182"/>
          <exon e_start="16380" e_stop="16441"/>
          <exon e_start="16814" e_stop="16957"/>
          <exon e_start="17056" e_stop="17104"/>
          <exon e_start="17189" e_stop="17215"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCAAGCAAAAGCTAAAGGAAGCTCATTGAGAAATGTCAACTGCTTCCATTAACAATTGCCTTACTCTCTCCCCTGCTCAAGCTTCCCTTAAGAAACCTACTCGTCCCGTTGCCTTCGCAAGGCTTGGCAA--C-TCTTCTTCTTCTTCTTCTATTCCAAGTCTCATCAGAAACGAGCCCGTCTTTGCTGCCCCTACTCCCATCATCAACCCCATTGTGGTACGAATTTTTAACTTACATCACTGTATTTTAATCTGTTATAACAAGTTATTTATATTTGACGTTACTTAATTTATTTTTTAAGCAAGACATTTTTTTTGTCTTATCGTATTTTTTGTAACGACTTGTGTCCATGCATGCTAGTTCACGTGAAAATTCAATATTGGCATAGTTCTAAACTTTAGTTTCTAACCACCTTTATTATTGGTATTGTTATTTTTGGCCATGAATCTCCTGAAGTTAGGTGAATTGATCATGTCGCTCTAAATTGTACACGTCTATTGCGTGTACTCAATGACATATAATATATTATTGCAATCCTAAAATAAGTGTTATTTTAATTTATTTTGAACTCATTAAAATAAATATGATATTTTACTGAGTTACTTATATTTATTACTTTGATTTTTTTGAGTACTAATTTGTATTTTGAAACTTTTAAGATGACGAGAGGGTGGAAATAACAAATTAAATTTGAAAATGAACCAAAATAGAGGTGGCAATTAGGTAGAGGTTCTCGCAAAATGAATATTAAATATGTAGGGCCGTATTGTGAATTATGTGGATAATGTTTTTGCTTTCTATTTTTTTTTAAAAAAAATAATTATTACTTACAATAATCCAACGGGTATCCTCGTATGTGCCCATCCTACAAGTGATAAAATGATAAGTACCAGTCTACCATCAAGTTTGTAGGATAGAAACTATTTAGTATACATTGTTTTTGTCTTAATTTCTAGTTTTGGTATCCATCTAAATCGATACTCCATTATGTTAATTATTTCATTTCTTTCTTTTGACATCTACATCACTTTTTAATGTGGTTACCACTTGCTATAATCATACTTCACTTAGCATTTTATTTGAACTTAGTGAAAGTGAAATTTTTCCTAATAATTGGTCTAAAAATTGAAGAAGATTAAAGCCAAGAAATTGAGTTCTTCCTTCTTTCTTCCAACTTTGAAAGTACCGATAGATACTATCATATAAAAAGAAGAGGTGGTCTGACTAACTCAATGAAGTGAATTTTTCAAAAACATGCTCAGAAAAATGAGAAAAATGGAGTTTTTGAAAAGAAAAATTAACAGATATTTAAAGATAAATTTTTGAAATTTGGTTCAAAATTTATGGTCAAATATTAACTTATATTTATATATATACCTCTTCTAAAATGCTAATGAGAATTAGAATTTGCAGAGAGAAGAAATGGCAAAAGAATCCTACGATCAAGCCATTGCTGCACTCGAGAAACTCCTCAGGTTTGTACTCTCTCTACGACTCTACCTTCTAAATCACACTACTTTTTTCTCGATCAAGTGGGGCCCAAAAAATATACATACACCCACACATACGTAGACAAAAAAAATGTTAAAATTTGCGAATATGCAGAGAAAACATAATATAATCATGCAATGTTTACTCGTAAAATTCAATTTCCCGGCAATGAACATGTTACTTGGTTTCGAGTTCTCCAGATCTGCATTAATTTTACCATTCTATCATCATTTTTTTACCCCATATCTGCATTAATTTATCATGGTAATGGTGCTCAAACCACAAATCTTTTTTTTTTCTACCTGAAATATTGCTTCAATAATAATAATGGTCTAAATTATTTTCTGCAATTACAGCGAGAAAGCAGAACTTGGACCAGTTGCTGCAGCAAGAGTTGACCAGATCACTGCTGAATTGAAATCAGCAGACGGCGGCAAGGCATTCGACCCTGTTGAGCACATGAAAGCTGGCTTTATTCATTTCAAGACTGAGAAATATGAGTAAGCAAATTCATTCAAATTAAAATTTCTGCATATTTGATGTTGTAACATTATTAGTGTCTGATAATTTTTCCTGTTTTCTATTTATGTACCAACAGCACAAACCCAGCCTTATATGGTGAGCTAGCAAAGGGCCAGAGCCCTAAGGTACAAATTCCTTGTTAATTTGTTGTCTAATTTTATGATTTGTACGGTTTCTGATGAGTTCTATTGTCCTAAATGTGTAAACAGTTCATGGTTTTCGCGTGCTCTGACTCA</genome_strand>
        <mrna_strand>GCAAGCAAAAGCTAAAGGAAGCTCATTGAGAAATGTCAACTGCTTCCATTAACAATTGCCTCACTCTCTCCCCTGCTCAAGCTTCCCTTAAGAAACCTACTCGTCCCGTTGCCTTCGCAAGGCTTGGCAACTCTTCTTCTTCTTCTTCTTCTATTCCAAGTCTCATCAGAAACGAGCCCGTCTTTGCTGCCCCTACTCCCATCATCAACCCCATTGTG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGAGAAGAAATGGCAAAAGAATCCTACGATCAGGCCATTGCTGCACTCGAGAAACTCCTCAG....................................................................................................................................................................................................................................................................................................................................................................................CGAGAAAGCAGAACTTGGACCAGTTGCTGCAGCAAGAGTTGATCAGATCACTGCTGAATTGAAATCAGCAGATGGCGGCAAGGCATTCGACCCTGTTGAGCACATGAAAGCTGGCTTTATTCATTTCAAGACTGAGAAATATGA..................................................................................................TACAAACCCAGCCTTATATGGTGAACTAGCAAAGGGCCAGAGCCCTAAG....................................................................................TTCATGGTTTTCGCGTGCTCTGACTCA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0236E02-u8qcS/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E289269" ref_strand="+" ref_description="SGN-E289269 [cLES-18-K18]">
      <seq>aagcaaaagctaaaggaagctcattgagaaatgtcaactgcttccattaacaattgccttactctctcccctgctcaagcttcccttaagaaacctactcgtcccgttgccttcgcaaggcttggcaactcttcttcttcttcttctattccaagtctcatcagaaacgagcccgtctttgctgcccctactcccatcatcaaccccatt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0236E02-u8qcS/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0236E02.1" temp_strand="+" temp_description="C02HBa0236E02.1  AC215430.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0236E02 sequenced_by:kribb upload_account_name:korea">
        <position start="14670" stop="15479"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="14970" g_stop="15179" g_length="210"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="210" r_length="210" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0236E02.1" gen_strand="+" ref_id="SGN-E289269" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>210</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0236E02.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E289269" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="14970" e_stop="15179"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAGCAAAAGCTAAAGGAAGCTCATTGAGAAATGTCAACTGCTTCCATTAACAATTGCCTTACTCTCTCCCCTGCTCAAGCTTCCCTTAAGAAACCTACTCGTCCCGTTGCCTTCGCAAGGCTTGGCAACTCTTCTTCTTCTTCTTCTATTCCAAGTCTCATCAGAAACGAGCCCGTCTTTGCTGCCCCTACTCCCATCATCAACCCCATT</genome_strand>
        <mrna_strand>AAGCAAAAGCTAAAGGAAGCTCATTGAGAAATGTCAACTGCTTCCATTAACAATTGCCTTACTCTCTCCCCTGCTCAAGCTTCCCTTAAGAAACCTACTCGTCCCGTTGCCTTCGCAAGGCTTGGCAACTCTTCTTCTTCTTCTTCTATTCCAAGTCTCATCAGAAACGAGCCCGTCTTTGCTGCCCCTACTCCCATCATCAACCCCATT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0236E02-u8qcS/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E295189" ref_strand="+" ref_description="SGN-E295189 [cLET-20-N23]">
      <seq>aaaagctaaaggaagctcattgagaaatgtcaactgcttccattaacaattgccttactctctcccctgctcaagcttcccttaagaaacctactcgtcccgttgccttcgcaaggcttggcaactcttcttcttcttcttctattccaagtctcatcagaaacgagcccgtctttgctgcccctactcccatcatcaaccccattgtgagagaagaaatggcaaaagaatcctacgatcaagccattgctgcactcgagaaactcctcagcgagaaagcagaacttggaccagttgctgcagcaagagttgaccagatcactgctgaattgaaatcagcagacggcggcaaggcattcgaccctgttgagcacatgaaagctggctttattcatttcaagactgagaaatatgacacaaacccagccttatatggtgagctagcaaagggccagagccctaagttcatggttttcgcgtgctctgactcacgagtctgcccatcccatgtcctc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0236E02-u8qcS/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0236E02.1" temp_strand="+" temp_description="C02HBa0236E02.1  AC215430.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0236E02 sequenced_by:kribb upload_account_name:korea">
        <position start="14674" stop="17539"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="14974" g_stop="15182" g_length="209"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="209" r_length="209" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="15183" i_stop="16379" i_length="1197">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.971" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="16380" g_stop="16441" g_length="62"/>
          <reference_exon_boundary r_type="cDNA" r_start="210" r_stop="271" r_length="62" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="16442" i_stop="16813" i_length="372">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="16814" g_stop="16957" g_length="144"/>
          <reference_exon_boundary r_type="cDNA" r_start="272" r_stop="415" r_length="144" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="16958" i_stop="17055" i_length="98">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="17056" g_stop="17104" g_length="49"/>
          <reference_exon_boundary r_type="cDNA" r_start="416" r_stop="464" r_length="49" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="17105" i_stop="17188" i_length="84">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.961" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="17189" g_stop="17239" g_length="51"/>
          <reference_exon_boundary r_type="cDNA" r_start="465" r_stop="515" r_length="51" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0236E02.1" gen_strand="+" ref_id="SGN-E295189" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>515</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0236E02.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E295189" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="14974" e_stop="15182"/>
          <exon e_start="16380" e_stop="16441"/>
          <exon e_start="16814" e_stop="16957"/>
          <exon e_start="17056" e_stop="17104"/>
          <exon e_start="17189" e_stop="17239"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAAGCTAAAGGAAGCTCATTGAGAAATGTCAACTGCTTCCATTAACAATTGCCTTACTCTCTCCCCTGCTCAAGCTTCCCTTAAGAAACCTACTCGTCCCGTTGCCTTCGCAAGGCTTGGCAACTCTTCTTCTTCTTCTTCTATTCCAAGTCTCATCAGAAACGAGCCCGTCTTTGCTGCCCCTACTCCCATCATCAACCCCATTGTGGTACGAATTTTTAACTTACATCACTGTATTTTAATCTGTTATAACAAGTTATTTATATTTGACGTTACTTAATTTATTTTTTAAGCAAGACATTTTTTTTGTCTTATCGTATTTTTTGTAACGACTTGTGTCCATGCATGCTAGTTCACGTGAAAATTCAATATTGGCATAGTTCTAAACTTTAGTTTCTAACCACCTTTATTATTGGTATTGTTATTTTTGGCCATGAATCTCCTGAAGTTAGGTGAATTGATCATGTCGCTCTAAATTGTACACGTCTATTGCGTGTACTCAATGACATATAATATATTATTGCAATCCTAAAATAAGTGTTATTTTAATTTATTTTGAACTCATTAAAATAAATATGATATTTTACTGAGTTACTTATATTTATTACTTTGATTTTTTTGAGTACTAATTTGTATTTTGAAACTTTTAAGATGACGAGAGGGTGGAAATAACAAATTAAATTTGAAAATGAACCAAAATAGAGGTGGCAATTAGGTAGAGGTTCTCGCAAAATGAATATTAAATATGTAGGGCCGTATTGTGAATTATGTGGATAATGTTTTTGCTTTCTATTTTTTTTTAAAAAAAATAATTATTACTTACAATAATCCAACGGGTATCCTCGTATGTGCCCATCCTACAAGTGATAAAATGATAAGTACCAGTCTACCATCAAGTTTGTAGGATAGAAACTATTTAGTATACATTGTTTTTGTCTTAATTTCTAGTTTTGGTATCCATCTAAATCGATACTCCATTATGTTAATTATTTCATTTCTTTCTTTTGACATCTACATCACTTTTTAATGTGGTTACCACTTGCTATAATCATACTTCACTTAGCATTTTATTTGAACTTAGTGAAAGTGAAATTTTTCCTAATAATTGGTCTAAAAATTGAAGAAGATTAAAGCCAAGAAATTGAGTTCTTCCTTCTTTCTTCCAACTTTGAAAGTACCGATAGATACTATCATATAAAAAGAAGAGGTGGTCTGACTAACTCAATGAAGTGAATTTTTCAAAAACATGCTCAGAAAAATGAGAAAAATGGAGTTTTTGAAAAGAAAAATTAACAGATATTTAAAGATAAATTTTTGAAATTTGGTTCAAAATTTATGGTCAAATATTAACTTATATTTATATATATACCTCTTCTAAAATGCTAATGAGAATTAGAATTTGCAGAGAGAAGAAATGGCAAAAGAATCCTACGATCAAGCCATTGCTGCACTCGAGAAACTCCTCAGGTTTGTACTCTCTCTACGACTCTACCTTCTAAATCACACTACTTTTTTCTCGATCAAGTGGGGCCCAAAAAATATACATACACCCACACATACGTAGACAAAAAAAATGTTAAAATTTGCGAATATGCAGAGAAAACATAATATAATCATGCAATGTTTACTCGTAAAATTCAATTTCCCGGCAATGAACATGTTACTTGGTTTCGAGTTCTCCAGATCTGCATTAATTTTACCATTCTATCATCATTTTTTTACCCCATATCTGCATTAATTTATCATGGTAATGGTGCTCAAACCACAAATCTTTTTTTTTTCTACCTGAAATATTGCTTCAATAATAATAATGGTCTAAATTATTTTCTGCAATTACAGCGAGAAAGCAGAACTTGGACCAGTTGCTGCAGCAAGAGTTGACCAGATCACTGCTGAATTGAAATCAGCAGACGGCGGCAAGGCATTCGACCCTGTTGAGCACATGAAAGCTGGCTTTATTCATTTCAAGACTGAGAAATATGAGTAAGCAAATTCATTCAAATTAAAATTTCTGCATATTTGATGTTGTAACATTATTAGTGTCTGATAATTTTTCCTGTTTTCTATTTATGTACCAACAGCACAAACCCAGCCTTATATGGTGAGCTAGCAAAGGGCCAGAGCCCTAAGGTACAAATTCCTTGTTAATTTGTTGTCTAATTTTATGATTTGTACGGTTTCTGATGAGTTCTATTGTCCTAAATGTGTAAACAGTTCATGGTTTTCGCGTGCTCTGACTCACGAGTCTGCCCATCCCATGTCCTC</genome_strand>
        <mrna_strand>AAAAGCTAAAGGAAGCTCATTGAGAAATGTCAACTGCTTCCATTAACAATTGCCTTACTCTCTCCCCTGCTCAAGCTTCCCTTAAGAAACCTACTCGTCCCGTTGCCTTCGCAAGGCTTGGCAACTCTTCTTCTTCTTCTTCTATTCCAAGTCTCATCAGAAACGAGCCCGTCTTTGCTGCCCCTACTCCCATCATCAACCCCATTGTG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGAGAAGAAATGGCAAAAGAATCCTACGATCAAGCCATTGCTGCACTCGAGAAACTCCTCAG....................................................................................................................................................................................................................................................................................................................................................................................CGAGAAAGCAGAACTTGGACCAGTTGCTGCAGCAAGAGTTGACCAGATCACTGCTGAATTGAAATCAGCAGACGGCGGCAAGGCATTCGACCCTGTTGAGCACATGAAAGCTGGCTTTATTCATTTCAAGACTGAGAAATATGA..................................................................................................CACAAACCCAGCCTTATATGGTGAGCTAGCAAAGGGCCAGAGCCCTAAG....................................................................................TTCATGGTTTTCGCGTGCTCTGACTCACGAGTCTGCCCATCCCATGTCCTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0236E02-u8qcS/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E726000" ref_strand="+" ref_description="SGN-E726000 [LA10AA05]">
      <seq>agctaaaggaagctcattgagaaatgtcaactgcttccattaacaattgccttactctctcccctgctcaagcttcccttaagaaacctactcgtcccgttgccttcgcaaggcttggcaactcttcttcttcttcttctattccaagtctcatcagaaacgagcccgtctttgctgcccctactcccatcatcaaccccattgtgagagaagaaatggcaaaagaatcctacgatcaagccattgctgcactcgagaaactcctcagcgagaaagcagaacttggaccagttgctgcagcaagagttgaccagatcactgctgaattgaaatcagcagacggcggcaaggcattcgaccctgttgagcacatgaaagctggctttattcatttcaagactgagaaatatgacacaaacccagccttatatggtgagctagcaaagggccagagccctaagttcatggttttcgcgtgctctgactcacgagtctgcccatcccatgtcctcaacttccaacctggtgaggcattcatggttcgtaacatcgcccacatg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0236E02-u8qcS/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0236E02.1" temp_strand="+" temp_description="C02HBa0236E02.1  AC215430.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0236E02 sequenced_by:kribb upload_account_name:korea">
        <position start="14677" stop="17587"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="14977" g_stop="15182" g_length="206"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="206" r_length="206" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="15183" i_stop="16379" i_length="1197">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.971" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="16380" g_stop="16441" g_length="62"/>
          <reference_exon_boundary r_type="cDNA" r_start="207" r_stop="268" r_length="62" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="16442" i_stop="16813" i_length="372">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="16814" g_stop="16957" g_length="144"/>
          <reference_exon_boundary r_type="cDNA" r_start="269" r_stop="412" r_length="144" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="16958" i_stop="17055" i_length="98">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="17056" g_stop="17104" g_length="49"/>
          <reference_exon_boundary r_type="cDNA" r_start="413" r_stop="461" r_length="49" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="17105" i_stop="17188" i_length="84">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.961" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="17189" g_stop="17287" g_length="99"/>
          <reference_exon_boundary r_type="cDNA" r_start="462" r_stop="560" r_length="99" r_score="0.990"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0236E02.1" gen_strand="+" ref_id="SGN-E726000" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>560</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0236E02.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E726000" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="14977" e_stop="15182"/>
          <exon e_start="16380" e_stop="16441"/>
          <exon e_start="16814" e_stop="16957"/>
          <exon e_start="17056" e_stop="17104"/>
          <exon e_start="17189" e_stop="17287"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGCTAAAGGAAGCTCATTGAGAAATGTCAACTGCTTCCATTAACAATTGCCTTACTCTCTCCCCTGCTCAAGCTTCCCTTAAGAAACCTACTCGTCCCGTTGCCTTCGCAAGGCTTGGCAACTCTTCTTCTTCTTCTTCTATTCCAAGTCTCATCAGAAACGAGCCCGTCTTTGCTGCCCCTACTCCCATCATCAACCCCATTGTGGTACGAATTTTTAACTTACATCACTGTATTTTAATCTGTTATAACAAGTTATTTATATTTGACGTTACTTAATTTATTTTTTAAGCAAGACATTTTTTTTGTCTTATCGTATTTTTTGTAACGACTTGTGTCCATGCATGCTAGTTCACGTGAAAATTCAATATTGGCATAGTTCTAAACTTTAGTTTCTAACCACCTTTATTATTGGTATTGTTATTTTTGGCCATGAATCTCCTGAAGTTAGGTGAATTGATCATGTCGCTCTAAATTGTACACGTCTATTGCGTGTACTCAATGACATATAATATATTATTGCAATCCTAAAATAAGTGTTATTTTAATTTATTTTGAACTCATTAAAATAAATATGATATTTTACTGAGTTACTTATATTTATTACTTTGATTTTTTTGAGTACTAATTTGTATTTTGAAACTTTTAAGATGACGAGAGGGTGGAAATAACAAATTAAATTTGAAAATGAACCAAAATAGAGGTGGCAATTAGGTAGAGGTTCTCGCAAAATGAATATTAAATATGTAGGGCCGTATTGTGAATTATGTGGATAATGTTTTTGCTTTCTATTTTTTTTTAAAAAAAATAATTATTACTTACAATAATCCAACGGGTATCCTCGTATGTGCCCATCCTACAAGTGATAAAATGATAAGTACCAGTCTACCATCAAGTTTGTAGGATAGAAACTATTTAGTATACATTGTTTTTGTCTTAATTTCTAGTTTTGGTATCCATCTAAATCGATACTCCATTATGTTAATTATTTCATTTCTTTCTTTTGACATCTACATCACTTTTTAATGTGGTTACCACTTGCTATAATCATACTTCACTTAGCATTTTATTTGAACTTAGTGAAAGTGAAATTTTTCCTAATAATTGGTCTAAAAATTGAAGAAGATTAAAGCCAAGAAATTGAGTTCTTCCTTCTTTCTTCCAACTTTGAAAGTACCGATAGATACTATCATATAAAAAGAAGAGGTGGTCTGACTAACTCAATGAAGTGAATTTTTCAAAAACATGCTCAGAAAAATGAGAAAAATGGAGTTTTTGAAAAGAAAAATTAACAGATATTTAAAGATAAATTTTTGAAATTTGGTTCAAAATTTATGGTCAAATATTAACTTATATTTATATATATACCTCTTCTAAAATGCTAATGAGAATTAGAATTTGCAGAGAGAAGAAATGGCAAAAGAATCCTACGATCAAGCCATTGCTGCACTCGAGAAACTCCTCAGGTTTGTACTCTCTCTACGACTCTACCTTCTAAATCACACTACTTTTTTCTCGATCAAGTGGGGCCCAAAAAATATACATACACCCACACATACGTAGACAAAAAAAATGTTAAAATTTGCGAATATGCAGAGAAAACATAATATAATCATGCAATGTTTACTCGTAAAATTCAATTTCCCGGCAATGAACATGTTACTTGGTTTCGAGTTCTCCAGATCTGCATTAATTTTACCATTCTATCATCATTTTTTTACCCCATATCTGCATTAATTTATCATGGTAATGGTGCTCAAACCACAAATCTTTTTTTTTTCTACCTGAAATATTGCTTCAATAATAATAATGGTCTAAATTATTTTCTGCAATTACAGCGAGAAAGCAGAACTTGGACCAGTTGCTGCAGCAAGAGTTGACCAGATCACTGCTGAATTGAAATCAGCAGACGGCGGCAAGGCATTCGACCCTGTTGAGCACATGAAAGCTGGCTTTATTCATTTCAAGACTGAGAAATATGAGTAAGCAAATTCATTCAAATTAAAATTTCTGCATATTTGATGTTGTAACATTATTAGTGTCTGATAATTTTTCCTGTTTTCTATTTATGTACCAACAGCACAAACCCAGCCTTATATGGTGAGCTAGCAAAGGGCCAGAGCCCTAAGGTACAAATTCCTTGTTAATTTGTTGTCTAATTTTATGATTTGTACGGTTTCTGATGAGTTCTATTGTCCTAAATGTGTAAACAGTTCATGGTTTTCGCGTGCTCTGACTCACGAGTCTGCCCATCCCATGTCCTCAACTTCCAACCTGGTGAGGCATTCATGGTTCGTAACATCGCCAACATG</genome_strand>
        <mrna_strand>AGCTAAAGGAAGCTCATTGAGAAATGTCAACTGCTTCCATTAACAATTGCCTTACTCTCTCCCCTGCTCAAGCTTCCCTTAAGAAACCTACTCGTCCCGTTGCCTTCGCAAGGCTTGGCAACTCTTCTTCTTCTTCTTCTATTCCAAGTCTCATCAGAAACGAGCCCGTCTTTGCTGCCCCTACTCCCATCATCAACCCCATTGTG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGAGAAGAAATGGCAAAAGAATCCTACGATCAAGCCATTGCTGCACTCGAGAAACTCCTCAG....................................................................................................................................................................................................................................................................................................................................................................................CGAGAAAGCAGAACTTGGACCAGTTGCTGCAGCAAGAGTTGACCAGATCACTGCTGAATTGAAATCAGCAGACGGCGGCAAGGCATTCGACCCTGTTGAGCACATGAAAGCTGGCTTTATTCATTTCAAGACTGAGAAATATGA..................................................................................................CACAAACCCAGCCTTATATGGTGAGCTAGCAAAGGGCCAGAGCCCTAAG....................................................................................TTCATGGTTTTCGCGTGCTCTGACTCACGAGTCTGCCCATCCCATGTCCTCAACTTCCAACCTGGTGAGGCATTCATGGTTCGTAACATCGCCCACATG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0236E02-u8qcS/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E470973" ref_strand="+" ref_description="SGN-E470973 [cSTB-21-P15]">
      <seq>agccaaagagaagctcatagagaaatgtcaactgcttccattaacaattgccttactatctcccctgctcaagcttcccttaagaaacctactcgtcccgttgccttcgcaagagctaggcaactcttcttcttcttcttctattccaagtctcatcagaaacgagcccgtcttcgctgcccctactcccatcatcaacccca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0236E02-u8qcS/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0236E02.1" temp_strand="+" temp_description="C02HBa0236E02.1  AC215430.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0236E02 sequenced_by:kribb upload_account_name:korea">
        <position start="14677" stop="15477"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="14977" g_stop="15177" g_length="201"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="203" r_length="203" r_score="0.955"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0236E02.1" gen_strand="+" ref_id="SGN-E470973" ref_strand="+">
        <total_alignment_score>0.955</total_alignment_score>
        <cumulative_length_of_scored_exons>201</cumulative_length_of_scored_exons>
        <coverage percentage="0.990" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0236E02.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E470973" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="14977" e_stop="15177"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGCTAAAG-GAAGCTCATTGAGAAATGTCAACTGCTTCCATTAACAATTGCCTTACTCTCTCCCCTGCTCAAGCTTCCCTTAAGAAACCTACTCGTCCCGTTGCCTTCGCAAG-GCTTGGCAACTCTTCTTCTTCTTCTTCTATTCCAAGTCTCATCAGAAACGAGCCCGTCTTTGCTGCCCCTACTCCCATCATCAACCCCA</genome_strand>
        <mrna_strand>AGCCAAAGAGAAGCTCATAGAGAAATGTCAACTGCTTCCATTAACAATTGCCTTACTATCTCCCCTGCTCAAGCTTCCCTTAAGAAACCTACTCGTCCCGTTGCCTTCGCAAGAGCTAGGCAACTCTTCTTCTTCTTCTTCTATTCCAAGTCTCATCAGAAACGAGCCCGTCTTCGCTGCCCCTACTCCCATCATCAACCCCA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0236E02-u8qcS/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E378229" ref_strand="+" ref_description="SGN-E378229 [TUS-45-G22]">
      <seq>aaaggaagctcattgagaaatgtcaactgcttccattaacaattgccttactctctcccctgctcaagcttcccttaagaaacctactcgtcccgttgccttcgcaaggcttggcaactcttcttcttcttcttctattccaagtctcatcagaaacgagcccgtctttgctgcccctactnccatcatcaacccattgtgagagaaaaatggcaaaagaatctacgatc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0236E02-u8qcS/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0236E02.1" temp_strand="+" temp_description="C02HBa0236E02.1  AC215430.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0236E02 sequenced_by:kribb upload_account_name:korea">
        <position start="14681" stop="16710"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="14981" g_stop="15182" g_length="202"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="201" r_length="201" r_score="0.990"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="15183" i_stop="16379" i_length="1197">
            <donor d_prob="1.000" d_score="0.96"/>
            <acceptor a_prob="0.971" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="16380" g_stop="16410" g_length="31"/>
          <reference_exon_boundary r_type="cDNA" r_start="202" r_stop="230" r_length="29" r_score="0.935"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0236E02.1" gen_strand="+" ref_id="SGN-E378229" ref_strand="+">
        <total_alignment_score>0.990</total_alignment_score>
        <cumulative_length_of_scored_exons>233</cumulative_length_of_scored_exons>
        <coverage percentage="1.013" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0236E02.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E378229" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="14981" e_stop="15182"/>
          <exon e_start="16380" e_stop="16410"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAGGAAGCTCATTGAGAAATGTCAACTGCTTCCATTAACAATTGCCTTACTCTCTCCCCTGCTCAAGCTTCCCTTAAGAAACCTACTCGTCCCGTTGCCTTCGCAAGGCTTGGCAACTCTTCTTCTTCTTCTTCTATTCCAAGTCTCATCAGAAACGAGCCCGTCTTTGCTGCCCCTACTCCCATCATCAACCCCATTGTGGTACGAATTTTTAACTTACATCACTGTATTTTAATCTGTTATAACAAGTTATTTATATTTGACGTTACTTAATTTATTTTTTAAGCAAGACATTTTTTTTGTCTTATCGTATTTTTTGTAACGACTTGTGTCCATGCATGCTAGTTCACGTGAAAATTCAATATTGGCATAGTTCTAAACTTTAGTTTCTAACCACCTTTATTATTGGTATTGTTATTTTTGGCCATGAATCTCCTGAAGTTAGGTGAATTGATCATGTCGCTCTAAATTGTACACGTCTATTGCGTGTACTCAATGACATATAATATATTATTGCAATCCTAAAATAAGTGTTATTTTAATTTATTTTGAACTCATTAAAATAAATATGATATTTTACTGAGTTACTTATATTTATTACTTTGATTTTTTTGAGTACTAATTTGTATTTTGAAACTTTTAAGATGACGAGAGGGTGGAAATAACAAATTAAATTTGAAAATGAACCAAAATAGAGGTGGCAATTAGGTAGAGGTTCTCGCAAAATGAATATTAAATATGTAGGGCCGTATTGTGAATTATGTGGATAATGTTTTTGCTTTCTATTTTTTTTTAAAAAAAATAATTATTACTTACAATAATCCAACGGGTATCCTCGTATGTGCCCATCCTACAAGTGATAAAATGATAAGTACCAGTCTACCATCAAGTTTGTAGGATAGAAACTATTTAGTATACATTGTTTTTGTCTTAATTTCTAGTTTTGGTATCCATCTAAATCGATACTCCATTATGTTAATTATTTCATTTCTTTCTTTTGACATCTACATCACTTTTTAATGTGGTTACCACTTGCTATAATCATACTTCACTTAGCATTTTATTTGAACTTAGTGAAAGTGAAATTTTTCCTAATAATTGGTCTAAAAATTGAAGAAGATTAAAGCCAAGAAATTGAGTTCTTCCTTCTTTCTTCCAACTTTGAAAGTACCGATAGATACTATCATATAAAAAGAAGAGGTGGTCTGACTAACTCAATGAAGTGAATTTTTCAAAAACATGCTCAGAAAAATGAGAAAAATGGAGTTTTTGAAAAGAAAAATTAACAGATATTTAAAGATAAATTTTTGAAATTTGGTTCAAAATTTATGGTCAAATATTAACTTATATTTATATATATACCTCTTCTAAAATGCTAATGAGAATTAGAATTTGCAGAGAGAAGAAATGGCAAAAGAATCCTACGATC</genome_strand>
        <mrna_strand>AAAGGAAGCTCATTGAGAAATGTCAACTGCTTCCATTAACAATTGCCTTACTCTCTCCCCTGCTCAAGCTTCCCTTAAGAAACCTACTCGTCCCGTTGCCTTCGCAAGGCTTGGCAACTCTTCTTCTTCTTCTTCTATTCCAAGTCTCATCAGAAACGAGCCCGTCTTTGCTGCCCCTACTNCCATCATCAA-CCCATTGTG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGAGAA-AAATGGCAAAAGAAT-CTACGATC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0236E02-u8qcS/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E283565" ref_strand="+" ref_description="SGN-E283565 [cLER-12-L20]">
      <seq>gaagctcattgagaaatgtcaactgcttccattaacaattgccttactctctcccctgctcaagctttccttaagaaacctactcgtaccgttgccttctcaaggcttggcaactcttcttcttcttcttctattccaagtctcatcataaacgagcccgtctttgctgcccctactcccatcatcaaccccattgtgagagaagaaatggcaaaagaatcctacgatcaagccattgctgcactcgagaaactcctcagcgagaaagcagaacttggaccacttgctgcagcaagagttgaccagatcactgctgaattgaaatcaacagacggcggcaaggcattcgaccctgttgagcacatgaaagctggctttattcatttcaagactgagaaatatgacacaaacccagccttatatggtgagctagcaaagggccagagccctaagttcatggttttcgcgtgctctgactcacgagtctgcccatcccatg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0236E02-u8qcS/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0236E02.1" temp_strand="+" temp_description="C02HBa0236E02.1  AC215430.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0236E02 sequenced_by:kribb upload_account_name:korea">
        <position start="14685" stop="17534"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="14985" g_stop="15182" g_length="198"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="198" r_length="198" r_score="0.980"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="15183" i_stop="16379" i_length="1197">
            <donor d_prob="1.000" d_score="0.98"/>
            <acceptor a_prob="0.971" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="16380" g_stop="16441" g_length="62"/>
          <reference_exon_boundary r_type="cDNA" r_start="199" r_stop="260" r_length="62" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="16442" i_stop="16813" i_length="372">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="16814" g_stop="16957" g_length="144"/>
          <reference_exon_boundary r_type="cDNA" r_start="261" r_stop="404" r_length="144" r_score="0.986"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="16958" i_stop="17055" i_length="98">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="17056" g_stop="17104" g_length="49"/>
          <reference_exon_boundary r_type="cDNA" r_start="405" r_stop="453" r_length="49" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="17105" i_stop="17188" i_length="84">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.961" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="17189" g_stop="17234" g_length="46"/>
          <reference_exon_boundary r_type="cDNA" r_start="454" r_stop="499" r_length="46" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0236E02.1" gen_strand="+" ref_id="SGN-E283565" ref_strand="+">
        <total_alignment_score>0.985</total_alignment_score>
        <cumulative_length_of_scored_exons>499</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0236E02.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E283565" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="14985" e_stop="15182"/>
          <exon e_start="16380" e_stop="16441"/>
          <exon e_start="16814" e_stop="16957"/>
          <exon e_start="17056" e_stop="17104"/>
          <exon e_start="17189" e_stop="17234"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAAGCTCATTGAGAAATGTCAACTGCTTCCATTAACAATTGCCTTACTCTCTCCCCTGCTCAAGCTTCCCTTAAGAAACCTACTCGTCCCGTTGCCTTCGCAAGGCTTGGCAACTCTTCTTCTTCTTCTTCTATTCCAAGTCTCATCAGAAACGAGCCCGTCTTTGCTGCCCCTACTCCCATCATCAACCCCATTGTGGTACGAATTTTTAACTTACATCACTGTATTTTAATCTGTTATAACAAGTTATTTATATTTGACGTTACTTAATTTATTTTTTAAGCAAGACATTTTTTTTGTCTTATCGTATTTTTTGTAACGACTTGTGTCCATGCATGCTAGTTCACGTGAAAATTCAATATTGGCATAGTTCTAAACTTTAGTTTCTAACCACCTTTATTATTGGTATTGTTATTTTTGGCCATGAATCTCCTGAAGTTAGGTGAATTGATCATGTCGCTCTAAATTGTACACGTCTATTGCGTGTACTCAATGACATATAATATATTATTGCAATCCTAAAATAAGTGTTATTTTAATTTATTTTGAACTCATTAAAATAAATATGATATTTTACTGAGTTACTTATATTTATTACTTTGATTTTTTTGAGTACTAATTTGTATTTTGAAACTTTTAAGATGACGAGAGGGTGGAAATAACAAATTAAATTTGAAAATGAACCAAAATAGAGGTGGCAATTAGGTAGAGGTTCTCGCAAAATGAATATTAAATATGTAGGGCCGTATTGTGAATTATGTGGATAATGTTTTTGCTTTCTATTTTTTTTTAAAAAAAATAATTATTACTTACAATAATCCAACGGGTATCCTCGTATGTGCCCATCCTACAAGTGATAAAATGATAAGTACCAGTCTACCATCAAGTTTGTAGGATAGAAACTATTTAGTATACATTGTTTTTGTCTTAATTTCTAGTTTTGGTATCCATCTAAATCGATACTCCATTATGTTAATTATTTCATTTCTTTCTTTTGACATCTACATCACTTTTTAATGTGGTTACCACTTGCTATAATCATACTTCACTTAGCATTTTATTTGAACTTAGTGAAAGTGAAATTTTTCCTAATAATTGGTCTAAAAATTGAAGAAGATTAAAGCCAAGAAATTGAGTTCTTCCTTCTTTCTTCCAACTTTGAAAGTACCGATAGATACTATCATATAAAAAGAAGAGGTGGTCTGACTAACTCAATGAAGTGAATTTTTCAAAAACATGCTCAGAAAAATGAGAAAAATGGAGTTTTTGAAAAGAAAAATTAACAGATATTTAAAGATAAATTTTTGAAATTTGGTTCAAAATTTATGGTCAAATATTAACTTATATTTATATATATACCTCTTCTAAAATGCTAATGAGAATTAGAATTTGCAGAGAGAAGAAATGGCAAAAGAATCCTACGATCAAGCCATTGCTGCACTCGAGAAACTCCTCAGGTTTGTACTCTCTCTACGACTCTACCTTCTAAATCACACTACTTTTTTCTCGATCAAGTGGGGCCCAAAAAATATACATACACCCACACATACGTAGACAAAAAAAATGTTAAAATTTGCGAATATGCAGAGAAAACATAATATAATCATGCAATGTTTACTCGTAAAATTCAATTTCCCGGCAATGAACATGTTACTTGGTTTCGAGTTCTCCAGATCTGCATTAATTTTACCATTCTATCATCATTTTTTTACCCCATATCTGCATTAATTTATCATGGTAATGGTGCTCAAACCACAAATCTTTTTTTTTTCTACCTGAAATATTGCTTCAATAATAATAATGGTCTAAATTATTTTCTGCAATTACAGCGAGAAAGCAGAACTTGGACCAGTTGCTGCAGCAAGAGTTGACCAGATCACTGCTGAATTGAAATCAGCAGACGGCGGCAAGGCATTCGACCCTGTTGAGCACATGAAAGCTGGCTTTATTCATTTCAAGACTGAGAAATATGAGTAAGCAAATTCATTCAAATTAAAATTTCTGCATATTTGATGTTGTAACATTATTAGTGTCTGATAATTTTTCCTGTTTTCTATTTATGTACCAACAGCACAAACCCAGCCTTATATGGTGAGCTAGCAAAGGGCCAGAGCCCTAAGGTACAAATTCCTTGTTAATTTGTTGTCTAATTTTATGATTTGTACGGTTTCTGATGAGTTCTATTGTCCTAAATGTGTAAACAGTTCATGGTTTTCGCGTGCTCTGACTCACGAGTCTGCCCATCCCATG</genome_strand>
        <mrna_strand>GAAGCTCATTGAGAAATGTCAACTGCTTCCATTAACAATTGCCTTACTCTCTCCCCTGCTCAAGCTTTCCTTAAGAAACCTACTCGTACCGTTGCCTTCTCAAGGCTTGGCAACTCTTCTTCTTCTTCTTCTATTCCAAGTCTCATCATAAACGAGCCCGTCTTTGCTGCCCCTACTCCCATCATCAACCCCATTGTG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGAGAAGAAATGGCAAAAGAATCCTACGATCAAGCCATTGCTGCACTCGAGAAACTCCTCAG....................................................................................................................................................................................................................................................................................................................................................................................CGAGAAAGCAGAACTTGGACCACTTGCTGCAGCAAGAGTTGACCAGATCACTGCTGAATTGAAATCAACAGACGGCGGCAAGGCATTCGACCCTGTTGAGCACATGAAAGCTGGCTTTATTCATTTCAAGACTGAGAAATATGA..................................................................................................CACAAACCCAGCCTTATATGGTGAGCTAGCAAAGGGCCAGAGCCCTAAG....................................................................................TTCATGGTTTTCGCGTGCTCTGACTCACGAGTCTGCCCATCCCATG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0236E02-u8qcS/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E286453" ref_strand="+" ref_description="SGN-E286453 [cLES-12-K17]">
      <seq>gaagctcattgagaaatgtcaactgcttccattaacaattgccttactctctcccctgctcaagcttcccttaagaaacctactcgtcccgttgccttcgcaaggcttggcaactcttcttcttcttcttctattccaagtctcatcagaaacgagcccgtctttgctgcccctactcccatcatcaaccccattgtgagagaagaaatggcaaaagaatcctacgatcaagccattgctgcactcgagaaactcctcagcgagaaagcagaacttggaccagttgctgcagcaagagttgaccagatcactgctgaattgaaatcagcagacggcggcaaggcattcgaccctgttgagcacatgaaagctggctttattcatttcaagactgagaaatatgacacaaacccagccttatatggtgagctagcaaagggccagagccctaagttcatggttttcgcgtgctctgactcacgagtctgcccatcccatg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0236E02-u8qcS/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0236E02.1" temp_strand="+" temp_description="C02HBa0236E02.1  AC215430.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0236E02 sequenced_by:kribb upload_account_name:korea">
        <position start="14685" stop="17534"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="14985" g_stop="15182" g_length="198"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="198" r_length="198" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="15183" i_stop="16379" i_length="1197">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.971" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="16380" g_stop="16441" g_length="62"/>
          <reference_exon_boundary r_type="cDNA" r_start="199" r_stop="260" r_length="62" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="16442" i_stop="16813" i_length="372">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="16814" g_stop="16957" g_length="144"/>
          <reference_exon_boundary r_type="cDNA" r_start="261" r_stop="404" r_length="144" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="16958" i_stop="17055" i_length="98">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="17056" g_stop="17104" g_length="49"/>
          <reference_exon_boundary r_type="cDNA" r_start="405" r_stop="453" r_length="49" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="17105" i_stop="17188" i_length="84">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.961" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="17189" g_stop="17234" g_length="46"/>
          <reference_exon_boundary r_type="cDNA" r_start="454" r_stop="499" r_length="46" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0236E02.1" gen_strand="+" ref_id="SGN-E286453" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>499</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0236E02.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E286453" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="14985" e_stop="15182"/>
          <exon e_start="16380" e_stop="16441"/>
          <exon e_start="16814" e_stop="16957"/>
          <exon e_start="17056" e_stop="17104"/>
          <exon e_start="17189" e_stop="17234"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAAGCTCATTGAGAAATGTCAACTGCTTCCATTAACAATTGCCTTACTCTCTCCCCTGCTCAAGCTTCCCTTAAGAAACCTACTCGTCCCGTTGCCTTCGCAAGGCTTGGCAACTCTTCTTCTTCTTCTTCTATTCCAAGTCTCATCAGAAACGAGCCCGTCTTTGCTGCCCCTACTCCCATCATCAACCCCATTGTGGTACGAATTTTTAACTTACATCACTGTATTTTAATCTGTTATAACAAGTTATTTATATTTGACGTTACTTAATTTATTTTTTAAGCAAGACATTTTTTTTGTCTTATCGTATTTTTTGTAACGACTTGTGTCCATGCATGCTAGTTCACGTGAAAATTCAATATTGGCATAGTTCTAAACTTTAGTTTCTAACCACCTTTATTATTGGTATTGTTATTTTTGGCCATGAATCTCCTGAAGTTAGGTGAATTGATCATGTCGCTCTAAATTGTACACGTCTATTGCGTGTACTCAATGACATATAATATATTATTGCAATCCTAAAATAAGTGTTATTTTAATTTATTTTGAACTCATTAAAATAAATATGATATTTTACTGAGTTACTTATATTTATTACTTTGATTTTTTTGAGTACTAATTTGTATTTTGAAACTTTTAAGATGACGAGAGGGTGGAAATAACAAATTAAATTTGAAAATGAACCAAAATAGAGGTGGCAATTAGGTAGAGGTTCTCGCAAAATGAATATTAAATATGTAGGGCCGTATTGTGAATTATGTGGATAATGTTTTTGCTTTCTATTTTTTTTTAAAAAAAATAATTATTACTTACAATAATCCAACGGGTATCCTCGTATGTGCCCATCCTACAAGTGATAAAATGATAAGTACCAGTCTACCATCAAGTTTGTAGGATAGAAACTATTTAGTATACATTGTTTTTGTCTTAATTTCTAGTTTTGGTATCCATCTAAATCGATACTCCATTATGTTAATTATTTCATTTCTTTCTTTTGACATCTACATCACTTTTTAATGTGGTTACCACTTGCTATAATCATACTTCACTTAGCATTTTATTTGAACTTAGTGAAAGTGAAATTTTTCCTAATAATTGGTCTAAAAATTGAAGAAGATTAAAGCCAAGAAATTGAGTTCTTCCTTCTTTCTTCCAACTTTGAAAGTACCGATAGATACTATCATATAAAAAGAAGAGGTGGTCTGACTAACTCAATGAAGTGAATTTTTCAAAAACATGCTCAGAAAAATGAGAAAAATGGAGTTTTTGAAAAGAAAAATTAACAGATATTTAAAGATAAATTTTTGAAATTTGGTTCAAAATTTATGGTCAAATATTAACTTATATTTATATATATACCTCTTCTAAAATGCTAATGAGAATTAGAATTTGCAGAGAGAAGAAATGGCAAAAGAATCCTACGATCAAGCCATTGCTGCACTCGAGAAACTCCTCAGGTTTGTACTCTCTCTACGACTCTACCTTCTAAATCACACTACTTTTTTCTCGATCAAGTGGGGCCCAAAAAATATACATACACCCACACATACGTAGACAAAAAAAATGTTAAAATTTGCGAATATGCAGAGAAAACATAATATAATCATGCAATGTTTACTCGTAAAATTCAATTTCCCGGCAATGAACATGTTACTTGGTTTCGAGTTCTCCAGATCTGCATTAATTTTACCATTCTATCATCATTTTTTTACCCCATATCTGCATTAATTTATCATGGTAATGGTGCTCAAACCACAAATCTTTTTTTTTTCTACCTGAAATATTGCTTCAATAATAATAATGGTCTAAATTATTTTCTGCAATTACAGCGAGAAAGCAGAACTTGGACCAGTTGCTGCAGCAAGAGTTGACCAGATCACTGCTGAATTGAAATCAGCAGACGGCGGCAAGGCATTCGACCCTGTTGAGCACATGAAAGCTGGCTTTATTCATTTCAAGACTGAGAAATATGAGTAAGCAAATTCATTCAAATTAAAATTTCTGCATATTTGATGTTGTAACATTATTAGTGTCTGATAATTTTTCCTGTTTTCTATTTATGTACCAACAGCACAAACCCAGCCTTATATGGTGAGCTAGCAAAGGGCCAGAGCCCTAAGGTACAAATTCCTTGTTAATTTGTTGTCTAATTTTATGATTTGTACGGTTTCTGATGAGTTCTATTGTCCTAAATGTGTAAACAGTTCATGGTTTTCGCGTGCTCTGACTCACGAGTCTGCCCATCCCATG</genome_strand>
        <mrna_strand>GAAGCTCATTGAGAAATGTCAACTGCTTCCATTAACAATTGCCTTACTCTCTCCCCTGCTCAAGCTTCCCTTAAGAAACCTACTCGTCCCGTTGCCTTCGCAAGGCTTGGCAACTCTTCTTCTTCTTCTTCTATTCCAAGTCTCATCAGAAACGAGCCCGTCTTTGCTGCCCCTACTCCCATCATCAACCCCATTGTG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGAGAAGAAATGGCAAAAGAATCCTACGATCAAGCCATTGCTGCACTCGAGAAACTCCTCAG....................................................................................................................................................................................................................................................................................................................................................................................CGAGAAAGCAGAACTTGGACCAGTTGCTGCAGCAAGAGTTGACCAGATCACTGCTGAATTGAAATCAGCAGACGGCGGCAAGGCATTCGACCCTGTTGAGCACATGAAAGCTGGCTTTATTCATTTCAAGACTGAGAAATATGA..................................................................................................CACAAACCCAGCCTTATATGGTGAGCTAGCAAAGGGCCAGAGCCCTAAG....................................................................................TTCATGGTTTTCGCGTGCTCTGACTCACGAGTCTGCCCATCCCATG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0236E02-u8qcS/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E475744" ref_strand="+" ref_description="SGN-E475744 [cSTB-41-L5]">
      <seq>gctcattgagacatgtcaactgcttccattaacaattgccttactatctcccctgctcaagcttcccttaagaaacctactcgtcccgttgccttcgcaaggcttggcaactcttcttcttcttctattccaagtctcatcagaaacgagcccgtcttcgctgcccctactcccatcatcaaccccattgtgagagaagaaatggcaaaagaatcatacgatcaggccattgctgcactcgagaaactcctcagcgagaaggcagaacttggaccagttgctgcagcaagagttgaccagattactgctgaattgaaatcagcagatggcagcaaagccttcgaccctgttgagcacatgaaagctggctttattcatttc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0236E02-u8qcS/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0236E02.1" temp_strand="+" temp_description="C02HBa0236E02.1  AC215430.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0236E02 sequenced_by:kribb upload_account_name:korea">
        <position start="14688" stop="17240"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="14988" g_stop="15182" g_length="195"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="192" r_length="192" r_score="0.969"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="15183" i_stop="16379" i_length="1197">
            <donor d_prob="1.000" d_score="0.98"/>
            <acceptor a_prob="0.971" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="16380" g_stop="16441" g_length="62"/>
          <reference_exon_boundary r_type="cDNA" r_start="193" r_stop="254" r_length="62" r_score="0.968"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="16442" i_stop="16813" i_length="372">
            <donor d_prob="0.999" d_score="0.96"/>
            <acceptor a_prob="1.000" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="16814" g_stop="16940" g_length="127"/>
          <reference_exon_boundary r_type="cDNA" r_start="255" r_stop="381" r_length="127" r_score="0.953"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0236E02.1" gen_strand="+" ref_id="SGN-E475744" ref_strand="+">
        <total_alignment_score>0.964</total_alignment_score>
        <cumulative_length_of_scored_exons>384</cumulative_length_of_scored_exons>
        <coverage percentage="1.008" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0236E02.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E475744" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="14988" e_stop="15182"/>
          <exon e_start="16380" e_stop="16441"/>
          <exon e_start="16814" e_stop="16940"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCTCATTGAGAAATGTCAACTGCTTCCATTAACAATTGCCTTACTCTCTCCCCTGCTCAAGCTTCCCTTAAGAAACCTACTCGTCCCGTTGCCTTCGCAAGGCTTGGCAACTCTTCTTCTTCTTCTTCTATTCCAAGTCTCATCAGAAACGAGCCCGTCTTTGCTGCCCCTACTCCCATCATCAACCCCATTGTGGTACGAATTTTTAACTTACATCACTGTATTTTAATCTGTTATAACAAGTTATTTATATTTGACGTTACTTAATTTATTTTTTAAGCAAGACATTTTTTTTGTCTTATCGTATTTTTTGTAACGACTTGTGTCCATGCATGCTAGTTCACGTGAAAATTCAATATTGGCATAGTTCTAAACTTTAGTTTCTAACCACCTTTATTATTGGTATTGTTATTTTTGGCCATGAATCTCCTGAAGTTAGGTGAATTGATCATGTCGCTCTAAATTGTACACGTCTATTGCGTGTACTCAATGACATATAATATATTATTGCAATCCTAAAATAAGTGTTATTTTAATTTATTTTGAACTCATTAAAATAAATATGATATTTTACTGAGTTACTTATATTTATTACTTTGATTTTTTTGAGTACTAATTTGTATTTTGAAACTTTTAAGATGACGAGAGGGTGGAAATAACAAATTAAATTTGAAAATGAACCAAAATAGAGGTGGCAATTAGGTAGAGGTTCTCGCAAAATGAATATTAAATATGTAGGGCCGTATTGTGAATTATGTGGATAATGTTTTTGCTTTCTATTTTTTTTTAAAAAAAATAATTATTACTTACAATAATCCAACGGGTATCCTCGTATGTGCCCATCCTACAAGTGATAAAATGATAAGTACCAGTCTACCATCAAGTTTGTAGGATAGAAACTATTTAGTATACATTGTTTTTGTCTTAATTTCTAGTTTTGGTATCCATCTAAATCGATACTCCATTATGTTAATTATTTCATTTCTTTCTTTTGACATCTACATCACTTTTTAATGTGGTTACCACTTGCTATAATCATACTTCACTTAGCATTTTATTTGAACTTAGTGAAAGTGAAATTTTTCCTAATAATTGGTCTAAAAATTGAAGAAGATTAAAGCCAAGAAATTGAGTTCTTCCTTCTTTCTTCCAACTTTGAAAGTACCGATAGATACTATCATATAAAAAGAAGAGGTGGTCTGACTAACTCAATGAAGTGAATTTTTCAAAAACATGCTCAGAAAAATGAGAAAAATGGAGTTTTTGAAAAGAAAAATTAACAGATATTTAAAGATAAATTTTTGAAATTTGGTTCAAAATTTATGGTCAAATATTAACTTATATTTATATATATACCTCTTCTAAAATGCTAATGAGAATTAGAATTTGCAGAGAGAAGAAATGGCAAAAGAATCCTACGATCAAGCCATTGCTGCACTCGAGAAACTCCTCAGGTTTGTACTCTCTCTACGACTCTACCTTCTAAATCACACTACTTTTTTCTCGATCAAGTGGGGCCCAAAAAATATACATACACCCACACATACGTAGACAAAAAAAATGTTAAAATTTGCGAATATGCAGAGAAAACATAATATAATCATGCAATGTTTACTCGTAAAATTCAATTTCCCGGCAATGAACATGTTACTTGGTTTCGAGTTCTCCAGATCTGCATTAATTTTACCATTCTATCATCATTTTTTTACCCCATATCTGCATTAATTTATCATGGTAATGGTGCTCAAACCACAAATCTTTTTTTTTTCTACCTGAAATATTGCTTCAATAATAATAATGGTCTAAATTATTTTCTGCAATTACAGCGAGAAAGCAGAACTTGGACCAGTTGCTGCAGCAAGAGTTGACCAGATCACTGCTGAATTGAAATCAGCAGACGGCGGCAAGGCATTCGACCCTGTTGAGCACATGAAAGCTGGCTTTATTCATTTC</genome_strand>
        <mrna_strand>GCTCATTGAGACATGTCAACTGCTTCCATTAACAATTGCCTTACTATCTCCCCTGCTCAAGCTTCCCTTAAGAAACCTACTCGTCCCGTTGCCTTCGCAAGGCTTGGCAA--C-TCTTCTTCTTCTTCTATTCCAAGTCTCATCAGAAACGAGCCCGTCTTCGCTGCCCCTACTCCCATCATCAACCCCATTGTG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGAGAAGAAATGGCAAAAGAATCATACGATCAGGCCATTGCTGCACTCGAGAAACTCCTCAG....................................................................................................................................................................................................................................................................................................................................................................................CGAGAAGGCAGAACTTGGACCAGTTGCTGCAGCAAGAGTTGACCAGATTACTGCTGAATTGAAATCAGCAGATGGCAGCAAAGCCTTCGACCCTGTTGAGCACATGAAAGCTGGCTTTATTCATTTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0236E02-u8qcS/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E365231" ref_strand="+" ref_description="SGN-E365231 [cLPT-16-C19]">
      <seq>ctcattgagaaatgtcaactgcttccattaacaattgccttactctctcccctgctcaagcttcccttaagaaacctactcgtcccgttgccttcgcaaggcttggcaactcttcttcttcttcttcttcttctattccaagtctcatcagaaacgagcccgtctttgctgcccctactcccatcatcaaccccattgtgagagaagaaatggcaaaagaatcctacgatcaggccgttgctgcactcgagaaactcctcagcgagaaagcagaacttggaccagttgctgcagcaagagttgaccagatcactgctgaattgaaatcagcagatggcggcaaggcattcgaccctgttgagcacatgaaagctggctttattcatttcaagactgagaaatatgatacaaacccagccttatatggtgaactagcaaagggccagagcccaaagttcatggttttcgcgtgctctgactcacgagtgtgcccatcccatgtcctc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0236E02-u8qcS/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0236E02.1" temp_strand="+" temp_description="C02HBa0236E02.1  AC215430.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0236E02 sequenced_by:kribb upload_account_name:korea">
        <position start="14689" stop="17539"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="14989" g_stop="15182" g_length="194"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="200" r_length="200" r_score="0.938"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="15183" i_stop="16379" i_length="1197">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.971" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="16380" g_stop="16441" g_length="62"/>
          <reference_exon_boundary r_type="cDNA" r_start="201" r_stop="262" r_length="62" r_score="0.968"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="16442" i_stop="16813" i_length="372">
            <donor d_prob="0.999" d_score="0.96"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="16814" g_stop="16957" g_length="144"/>
          <reference_exon_boundary r_type="cDNA" r_start="263" r_stop="406" r_length="144" r_score="0.993"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="16958" i_stop="17055" i_length="98">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="17056" g_stop="17104" g_length="49"/>
          <reference_exon_boundary r_type="cDNA" r_start="407" r_stop="455" r_length="49" r_score="0.939"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="17105" i_stop="17188" i_length="84">
            <donor d_prob="1.000" d_score="0.94"/>
            <acceptor a_prob="0.961" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="17189" g_stop="17239" g_length="51"/>
          <reference_exon_boundary r_type="cDNA" r_start="456" r_stop="506" r_length="51" r_score="0.980"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0236E02.1" gen_strand="+" ref_id="SGN-E365231" ref_strand="+">
        <total_alignment_score>0.965</total_alignment_score>
        <cumulative_length_of_scored_exons>500</cumulative_length_of_scored_exons>
        <coverage percentage="0.988" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0236E02.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E365231" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="14989" e_stop="15182"/>
          <exon e_start="16380" e_stop="16441"/>
          <exon e_start="16814" e_stop="16957"/>
          <exon e_start="17056" e_stop="17104"/>
          <exon e_start="17189" e_stop="17239"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTCATTGAGAAATGTCAACTGCTTCCATTAACAATTGCCTTACTCTCTCCCCTGCTCAAGCTTCCCTTAAGAAACCTACTCGTCCCGTTGCCTTCGCAAGGCTTGGCAA-----C-TCTTCTTCTTCTTCTTCTATTCCAAGTCTCATCAGAAACGAGCCCGTCTTTGCTGCCCCTACTCCCATCATCAACCCCATTGTGGTACGAATTTTTAACTTACATCACTGTATTTTAATCTGTTATAACAAGTTATTTATATTTGACGTTACTTAATTTATTTTTTAAGCAAGACATTTTTTTTGTCTTATCGTATTTTTTGTAACGACTTGTGTCCATGCATGCTAGTTCACGTGAAAATTCAATATTGGCATAGTTCTAAACTTTAGTTTCTAACCACCTTTATTATTGGTATTGTTATTTTTGGCCATGAATCTCCTGAAGTTAGGTGAATTGATCATGTCGCTCTAAATTGTACACGTCTATTGCGTGTACTCAATGACATATAATATATTATTGCAATCCTAAAATAAGTGTTATTTTAATTTATTTTGAACTCATTAAAATAAATATGATATTTTACTGAGTTACTTATATTTATTACTTTGATTTTTTTGAGTACTAATTTGTATTTTGAAACTTTTAAGATGACGAGAGGGTGGAAATAACAAATTAAATTTGAAAATGAACCAAAATAGAGGTGGCAATTAGGTAGAGGTTCTCGCAAAATGAATATTAAATATGTAGGGCCGTATTGTGAATTATGTGGATAATGTTTTTGCTTTCTATTTTTTTTTAAAAAAAATAATTATTACTTACAATAATCCAACGGGTATCCTCGTATGTGCCCATCCTACAAGTGATAAAATGATAAGTACCAGTCTACCATCAAGTTTGTAGGATAGAAACTATTTAGTATACATTGTTTTTGTCTTAATTTCTAGTTTTGGTATCCATCTAAATCGATACTCCATTATGTTAATTATTTCATTTCTTTCTTTTGACATCTACATCACTTTTTAATGTGGTTACCACTTGCTATAATCATACTTCACTTAGCATTTTATTTGAACTTAGTGAAAGTGAAATTTTTCCTAATAATTGGTCTAAAAATTGAAGAAGATTAAAGCCAAGAAATTGAGTTCTTCCTTCTTTCTTCCAACTTTGAAAGTACCGATAGATACTATCATATAAAAAGAAGAGGTGGTCTGACTAACTCAATGAAGTGAATTTTTCAAAAACATGCTCAGAAAAATGAGAAAAATGGAGTTTTTGAAAAGAAAAATTAACAGATATTTAAAGATAAATTTTTGAAATTTGGTTCAAAATTTATGGTCAAATATTAACTTATATTTATATATATACCTCTTCTAAAATGCTAATGAGAATTAGAATTTGCAGAGAGAAGAAATGGCAAAAGAATCCTACGATCAAGCCATTGCTGCACTCGAGAAACTCCTCAGGTTTGTACTCTCTCTACGACTCTACCTTCTAAATCACACTACTTTTTTCTCGATCAAGTGGGGCCCAAAAAATATACATACACCCACACATACGTAGACAAAAAAAATGTTAAAATTTGCGAATATGCAGAGAAAACATAATATAATCATGCAATGTTTACTCGTAAAATTCAATTTCCCGGCAATGAACATGTTACTTGGTTTCGAGTTCTCCAGATCTGCATTAATTTTACCATTCTATCATCATTTTTTTACCCCATATCTGCATTAATTTATCATGGTAATGGTGCTCAAACCACAAATCTTTTTTTTTTCTACCTGAAATATTGCTTCAATAATAATAATGGTCTAAATTATTTTCTGCAATTACAGCGAGAAAGCAGAACTTGGACCAGTTGCTGCAGCAAGAGTTGACCAGATCACTGCTGAATTGAAATCAGCAGACGGCGGCAAGGCATTCGACCCTGTTGAGCACATGAAAGCTGGCTTTATTCATTTCAAGACTGAGAAATATGAGTAAGCAAATTCATTCAAATTAAAATTTCTGCATATTTGATGTTGTAACATTATTAGTGTCTGATAATTTTTCCTGTTTTCTATTTATGTACCAACAGCACAAACCCAGCCTTATATGGTGAGCTAGCAAAGGGCCAGAGCCCTAAGGTACAAATTCCTTGTTAATTTGTTGTCTAATTTTATGATTTGTACGGTTTCTGATGAGTTCTATTGTCCTAAATGTGTAAACAGTTCATGGTTTTCGCGTGCTCTGACTCACGAGTCTGCCCATCCCATGTCCTC</genome_strand>
        <mrna_strand>CTCATTGAGAAATGTCAACTGCTTCCATTAACAATTGCCTTACTCTCTCCCCTGCTCAAGCTTCCCTTAAGAAACCTACTCGTCCCGTTGCCTTCGCAAGGCTTGGCAACTCTTCTTCTTCTTCTTCTTCTTCTATTCCAAGTCTCATCAGAAACGAGCCCGTCTTTGCTGCCCCTACTCCCATCATCAACCCCATTGTG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGAGAAGAAATGGCAAAAGAATCCTACGATCAGGCCGTTGCTGCACTCGAGAAACTCCTCAG....................................................................................................................................................................................................................................................................................................................................................................................CGAGAAAGCAGAACTTGGACCAGTTGCTGCAGCAAGAGTTGACCAGATCACTGCTGAATTGAAATCAGCAGATGGCGGCAAGGCATTCGACCCTGTTGAGCACATGAAAGCTGGCTTTATTCATTTCAAGACTGAGAAATATGA..................................................................................................TACAAACCCAGCCTTATATGGTGAACTAGCAAAGGGCCAGAGCCCAAAG....................................................................................TTCATGGTTTTCGCGTGCTCTGACTCACGAGTGTGCCCATCCCATGTCCTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0236E02-u8qcS/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E294951" ref_strand="+" ref_description="SGN-E294951 [cLET-17-H17]">
      <seq>agaaatgtctactgcttccattggcaattgccttactctctcccctgctcaagcttcccttaagaaacctactcgtcccgttgccttcgcaaggcttggcaactcttcttcttcttcttctattccaagtctcatcagaaacgagcccgtctttgctgcccctactcccatcatcaaccccattgtgagagaagaaatggcaaaagaatcctacgatcaagccattgctgcactcgagaaactcctcagcgagaaagcagaacttggaccagttgctgcagcaagagttgaccagatcactgctgaattgaaatcaccagacggcggcaaggcattcgaccctgttgagcacatgaaagctggctttattcatttcaggactgagaaatatgacacaaacccagccttatatggtgagctagcaaagggccagagccctaaggtcatggttttcggcgggctctgactca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0236E02-u8qcS/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0236E02.1" temp_strand="+" temp_description="C02HBa0236E02.1  AC215430.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0236E02 sequenced_by:kribb upload_account_name:korea">
        <position start="14696" stop="17409"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="14996" g_stop="15182" g_length="187"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="187" r_length="187" r_score="0.984"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="15183" i_stop="16379" i_length="1197">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.971" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="16380" g_stop="16441" g_length="62"/>
          <reference_exon_boundary r_type="cDNA" r_start="188" r_stop="249" r_length="62" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="16442" i_stop="16813" i_length="372">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="16814" g_stop="16957" g_length="144"/>
          <reference_exon_boundary r_type="cDNA" r_start="250" r_stop="393" r_length="144" r_score="0.986"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="16958" i_stop="17055" i_length="98">
            <donor d_prob="0.999" d_score="0.98"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="17056" g_stop="17104" g_length="49"/>
          <reference_exon_boundary r_type="cDNA" r_start="394" r_stop="442" r_length="49" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="17105" i_stop="17188" i_length="84">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.961" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="17189" g_stop="17215" g_length="27"/>
          <reference_exon_boundary r_type="cDNA" r_start="443" r_stop="470" r_length="28" r_score="0.852"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0236E02.1" gen_strand="+" ref_id="SGN-E294951" ref_strand="+">
        <total_alignment_score>0.987</total_alignment_score>
        <cumulative_length_of_scored_exons>469</cumulative_length_of_scored_exons>
        <coverage percentage="0.998" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0236E02.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E294951" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="14996" e_stop="15182"/>
          <exon e_start="16380" e_stop="16441"/>
          <exon e_start="16814" e_stop="16957"/>
          <exon e_start="17056" e_stop="17104"/>
          <exon e_start="17189" e_stop="17215"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGAAATGTCAACTGCTTCCATTAACAATTGCCTTACTCTCTCCCCTGCTCAAGCTTCCCTTAAGAAACCTACTCGTCCCGTTGCCTTCGCAAGGCTTGGCAACTCTTCTTCTTCTTCTTCTATTCCAAGTCTCATCAGAAACGAGCCCGTCTTTGCTGCCCCTACTCCCATCATCAACCCCATTGTGGTACGAATTTTTAACTTACATCACTGTATTTTAATCTGTTATAACAAGTTATTTATATTTGACGTTACTTAATTTATTTTTTAAGCAAGACATTTTTTTTGTCTTATCGTATTTTTTGTAACGACTTGTGTCCATGCATGCTAGTTCACGTGAAAATTCAATATTGGCATAGTTCTAAACTTTAGTTTCTAACCACCTTTATTATTGGTATTGTTATTTTTGGCCATGAATCTCCTGAAGTTAGGTGAATTGATCATGTCGCTCTAAATTGTACACGTCTATTGCGTGTACTCAATGACATATAATATATTATTGCAATCCTAAAATAAGTGTTATTTTAATTTATTTTGAACTCATTAAAATAAATATGATATTTTACTGAGTTACTTATATTTATTACTTTGATTTTTTTGAGTACTAATTTGTATTTTGAAACTTTTAAGATGACGAGAGGGTGGAAATAACAAATTAAATTTGAAAATGAACCAAAATAGAGGTGGCAATTAGGTAGAGGTTCTCGCAAAATGAATATTAAATATGTAGGGCCGTATTGTGAATTATGTGGATAATGTTTTTGCTTTCTATTTTTTTTTAAAAAAAATAATTATTACTTACAATAATCCAACGGGTATCCTCGTATGTGCCCATCCTACAAGTGATAAAATGATAAGTACCAGTCTACCATCAAGTTTGTAGGATAGAAACTATTTAGTATACATTGTTTTTGTCTTAATTTCTAGTTTTGGTATCCATCTAAATCGATACTCCATTATGTTAATTATTTCATTTCTTTCTTTTGACATCTACATCACTTTTTAATGTGGTTACCACTTGCTATAATCATACTTCACTTAGCATTTTATTTGAACTTAGTGAAAGTGAAATTTTTCCTAATAATTGGTCTAAAAATTGAAGAAGATTAAAGCCAAGAAATTGAGTTCTTCCTTCTTTCTTCCAACTTTGAAAGTACCGATAGATACTATCATATAAAAAGAAGAGGTGGTCTGACTAACTCAATGAAGTGAATTTTTCAAAAACATGCTCAGAAAAATGAGAAAAATGGAGTTTTTGAAAAGAAAAATTAACAGATATTTAAAGATAAATTTTTGAAATTTGGTTCAAAATTTATGGTCAAATATTAACTTATATTTATATATATACCTCTTCTAAAATGCTAATGAGAATTAGAATTTGCAGAGAGAAGAAATGGCAAAAGAATCCTACGATCAAGCCATTGCTGCACTCGAGAAACTCCTCAGGTTTGTACTCTCTCTACGACTCTACCTTCTAAATCACACTACTTTTTTCTCGATCAAGTGGGGCCCAAAAAATATACATACACCCACACATACGTAGACAAAAAAAATGTTAAAATTTGCGAATATGCAGAGAAAACATAATATAATCATGCAATGTTTACTCGTAAAATTCAATTTCCCGGCAATGAACATGTTACTTGGTTTCGAGTTCTCCAGATCTGCATTAATTTTACCATTCTATCATCATTTTTTTACCCCATATCTGCATTAATTTATCATGGTAATGGTGCTCAAACCACAAATCTTTTTTTTTTCTACCTGAAATATTGCTTCAATAATAATAATGGTCTAAATTATTTTCTGCAATTACAGCGAGAAAGCAGAACTTGGACCAGTTGCTGCAGCAAGAGTTGACCAGATCACTGCTGAATTGAAATCAGCAGACGGCGGCAAGGCATTCGACCCTGTTGAGCACATGAAAGCTGGCTTTATTCATTTCAAGACTGAGAAATATGAGTAAGCAAATTCATTCAAATTAAAATTTCTGCATATTTGATGTTGTAACATTATTAGTGTCTGATAATTTTTCCTGTTTTCTATTTATGTACCAACAGCACAAACCCAGCCTTATATGGTGAGCTAGCAAAGGGCCAGAGCCCTAAGGTACAAATTCCTTGTTAATTTGTTGTCTAATTTTATGATTTGTACGGTTTCTGATGAGTTCTATTGTCCTAAATGTGTAAACAGTTCATGGTTTTC-GCGTGCTCTGACTCA</genome_strand>
        <mrna_strand>AGAAATGTCTACTGCTTCCATTGGCAATTGCCTTACTCTCTCCCCTGCTCAAGCTTCCCTTAAGAAACCTACTCGTCCCGTTGCCTTCGCAAGGCTTGGCAACTCTTCTTCTTCTTCTTCTATTCCAAGTCTCATCAGAAACGAGCCCGTCTTTGCTGCCCCTACTCCCATCATCAACCCCATTGTG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGAGAAGAAATGGCAAAAGAATCCTACGATCAAGCCATTGCTGCACTCGAGAAACTCCTCAG....................................................................................................................................................................................................................................................................................................................................................................................CGAGAAAGCAGAACTTGGACCAGTTGCTGCAGCAAGAGTTGACCAGATCACTGCTGAATTGAAATCACCAGACGGCGGCAAGGCATTCGACCCTGTTGAGCACATGAAAGCTGGCTTTATTCATTTCAGGACTGAGAAATATGA..................................................................................................CACAAACCCAGCCTTATATGGTGAGCTAGCAAAGGGCCAGAGCCCTAAG....................................................................................GTCATGGTTTTCGGCGGGCTCTGACTCA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0236E02-u8qcS/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E470425" ref_strand="+" ref_description="SGN-E470425 [cSTB-18-O3]">
      <seq>gacatgtcaactgcttccattaacaatcgccttactatctcccctgctcaagcttcccttaagaaacctactcgtcccgttgccttcgcaaggcttggcaactcttcttcttcttctattccaagtctcatcagaaacgagcccgtcttcgctgcccctactcccatcatcaaccccattgtgagagaagaaatggcaaaagaatcatacgatcaggccattgctgcactcgagaaactcctcagcgagaaggcagaacttggaccacttgctgcagcaagagttgaccagattactgctgaattgaaatcagcagatggcagcaaagcctt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0236E02-u8qcS/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0236E02.1" temp_strand="+" temp_description="C02HBa0236E02.1  AC215430.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0236E02 sequenced_by:kribb upload_account_name:korea">
        <position start="14697" stop="17200"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="14997" g_stop="15182" g_length="186"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="183" r_length="183" r_score="0.962"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="15183" i_stop="16379" i_length="1197">
            <donor d_prob="1.000" d_score="0.98"/>
            <acceptor a_prob="0.971" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="16380" g_stop="16441" g_length="62"/>
          <reference_exon_boundary r_type="cDNA" r_start="184" r_stop="245" r_length="62" r_score="0.968"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="16442" i_stop="16813" i_length="372">
            <donor d_prob="0.999" d_score="0.96"/>
            <acceptor a_prob="1.000" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="16814" g_stop="16900" g_length="87"/>
          <reference_exon_boundary r_type="cDNA" r_start="246" r_stop="332" r_length="87" r_score="0.920"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0236E02.1" gen_strand="+" ref_id="SGN-E470425" ref_strand="+">
        <total_alignment_score>0.952</total_alignment_score>
        <cumulative_length_of_scored_exons>335</cumulative_length_of_scored_exons>
        <coverage percentage="1.009" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0236E02.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E470425" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="14997" e_stop="15182"/>
          <exon e_start="16380" e_stop="16441"/>
          <exon e_start="16814" e_stop="16900"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAAATGTCAACTGCTTCCATTAACAATTGCCTTACTCTCTCCCCTGCTCAAGCTTCCCTTAAGAAACCTACTCGTCCCGTTGCCTTCGCAAGGCTTGGCAACTCTTCTTCTTCTTCTTCTATTCCAAGTCTCATCAGAAACGAGCCCGTCTTTGCTGCCCCTACTCCCATCATCAACCCCATTGTGGTACGAATTTTTAACTTACATCACTGTATTTTAATCTGTTATAACAAGTTATTTATATTTGACGTTACTTAATTTATTTTTTAAGCAAGACATTTTTTTTGTCTTATCGTATTTTTTGTAACGACTTGTGTCCATGCATGCTAGTTCACGTGAAAATTCAATATTGGCATAGTTCTAAACTTTAGTTTCTAACCACCTTTATTATTGGTATTGTTATTTTTGGCCATGAATCTCCTGAAGTTAGGTGAATTGATCATGTCGCTCTAAATTGTACACGTCTATTGCGTGTACTCAATGACATATAATATATTATTGCAATCCTAAAATAAGTGTTATTTTAATTTATTTTGAACTCATTAAAATAAATATGATATTTTACTGAGTTACTTATATTTATTACTTTGATTTTTTTGAGTACTAATTTGTATTTTGAAACTTTTAAGATGACGAGAGGGTGGAAATAACAAATTAAATTTGAAAATGAACCAAAATAGAGGTGGCAATTAGGTAGAGGTTCTCGCAAAATGAATATTAAATATGTAGGGCCGTATTGTGAATTATGTGGATAATGTTTTTGCTTTCTATTTTTTTTTAAAAAAAATAATTATTACTTACAATAATCCAACGGGTATCCTCGTATGTGCCCATCCTACAAGTGATAAAATGATAAGTACCAGTCTACCATCAAGTTTGTAGGATAGAAACTATTTAGTATACATTGTTTTTGTCTTAATTTCTAGTTTTGGTATCCATCTAAATCGATACTCCATTATGTTAATTATTTCATTTCTTTCTTTTGACATCTACATCACTTTTTAATGTGGTTACCACTTGCTATAATCATACTTCACTTAGCATTTTATTTGAACTTAGTGAAAGTGAAATTTTTCCTAATAATTGGTCTAAAAATTGAAGAAGATTAAAGCCAAGAAATTGAGTTCTTCCTTCTTTCTTCCAACTTTGAAAGTACCGATAGATACTATCATATAAAAAGAAGAGGTGGTCTGACTAACTCAATGAAGTGAATTTTTCAAAAACATGCTCAGAAAAATGAGAAAAATGGAGTTTTTGAAAAGAAAAATTAACAGATATTTAAAGATAAATTTTTGAAATTTGGTTCAAAATTTATGGTCAAATATTAACTTATATTTATATATATACCTCTTCTAAAATGCTAATGAGAATTAGAATTTGCAGAGAGAAGAAATGGCAAAAGAATCCTACGATCAAGCCATTGCTGCACTCGAGAAACTCCTCAGGTTTGTACTCTCTCTACGACTCTACCTTCTAAATCACACTACTTTTTTCTCGATCAAGTGGGGCCCAAAAAATATACATACACCCACACATACGTAGACAAAAAAAATGTTAAAATTTGCGAATATGCAGAGAAAACATAATATAATCATGCAATGTTTACTCGTAAAATTCAATTTCCCGGCAATGAACATGTTACTTGGTTTCGAGTTCTCCAGATCTGCATTAATTTTACCATTCTATCATCATTTTTTTACCCCATATCTGCATTAATTTATCATGGTAATGGTGCTCAAACCACAAATCTTTTTTTTTTCTACCTGAAATATTGCTTCAATAATAATAATGGTCTAAATTATTTTCTGCAATTACAGCGAGAAAGCAGAACTTGGACCAGTTGCTGCAGCAAGAGTTGACCAGATCACTGCTGAATTGAAATCAGCAGACGGCGGCAAGGCATT</genome_strand>
        <mrna_strand>GACATGTCAACTGCTTCCATTAACAATCGCCTTACTATCTCCCCTGCTCAAGCTTCCCTTAAGAAACCTACTCGTCCCGTTGCCTTCGCAAGGCTTGGCAA--C-TCTTCTTCTTCTTCTATTCCAAGTCTCATCAGAAACGAGCCCGTCTTCGCTGCCCCTACTCCCATCATCAACCCCATTGTG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGAGAAGAAATGGCAAAAGAATCATACGATCAGGCCATTGCTGCACTCGAGAAACTCCTCAG....................................................................................................................................................................................................................................................................................................................................................................................CGAGAAGGCAGAACTTGGACCACTTGCTGCAGCAAGAGTTGACCAGATTACTGCTGAATTGAAATCAGCAGATGGCAGCAAAGCCTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0236E02-u8qcS/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E281775" ref_strand="+" ref_description="SGN-E281775 [cLER-14-B17]">
      <seq>ctgcataccttatacctacaatcatggcggaaagaggaggttgnnaaatgtcaactgcttccattaacaattgccttactctctcccctgctcaagcttcccttaagaaacctactcgtcccgttgccttcgcaaggcttggcaactcttcttcttcttcttctattccaagtctcatcagaaacgagcccgtctttgctgcccctactcccatcatcaaccccattgtgagagaagaaatggcaaaagaatcctacgatcaagccattgctgcactcgagaaactcctcagcgagaaagcagaacttggaccagttgctgcagcaagagttgaccagatcactgctgaattgaaatcagcagacggcggcaaggcattcgaccctgttgagcacatgaaagctggctttattcatttcaagactgagaaatatgacacaaacccagccttatatggtgagctagcaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0236E02-u8qcS/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0236E02.1" temp_strand="+" temp_description="C02HBa0236E02.1  AC215430.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0236E02 sequenced_by:kribb upload_account_name:korea">
        <position start="14693" stop="17388"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="14998" g_stop="15182" g_length="185"/>
          <reference_exon_boundary r_type="cDNA" r_start="46" r_stop="230" r_length="185" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="15183" i_stop="16379" i_length="1197">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.971" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="16380" g_stop="16441" g_length="62"/>
          <reference_exon_boundary r_type="cDNA" r_start="231" r_stop="292" r_length="62" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="16442" i_stop="16813" i_length="372">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="16814" g_stop="16957" g_length="144"/>
          <reference_exon_boundary r_type="cDNA" r_start="293" r_stop="436" r_length="144" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="16958" i_stop="17055" i_length="98">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="17056" g_stop="17088" g_length="33"/>
          <reference_exon_boundary r_type="cDNA" r_start="437" r_stop="469" r_length="33" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0236E02.1" gen_strand="+" ref_id="SGN-E281775" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>424</cumulative_length_of_scored_exons>
        <coverage percentage="0.904" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0236E02.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E281775" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="14998" e_stop="15182"/>
          <exon e_start="16380" e_stop="16441"/>
          <exon e_start="16814" e_stop="16957"/>
          <exon e_start="17056" e_stop="17088"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAATGTCAACTGCTTCCATTAACAATTGCCTTACTCTCTCCCCTGCTCAAGCTTCCCTTAAGAAACCTACTCGTCCCGTTGCCTTCGCAAGGCTTGGCAACTCTTCTTCTTCTTCTTCTATTCCAAGTCTCATCAGAAACGAGCCCGTCTTTGCTGCCCCTACTCCCATCATCAACCCCATTGTGGTACGAATTTTTAACTTACATCACTGTATTTTAATCTGTTATAACAAGTTATTTATATTTGACGTTACTTAATTTATTTTTTAAGCAAGACATTTTTTTTGTCTTATCGTATTTTTTGTAACGACTTGTGTCCATGCATGCTAGTTCACGTGAAAATTCAATATTGGCATAGTTCTAAACTTTAGTTTCTAACCACCTTTATTATTGGTATTGTTATTTTTGGCCATGAATCTCCTGAAGTTAGGTGAATTGATCATGTCGCTCTAAATTGTACACGTCTATTGCGTGTACTCAATGACATATAATATATTATTGCAATCCTAAAATAAGTGTTATTTTAATTTATTTTGAACTCATTAAAATAAATATGATATTTTACTGAGTTACTTATATTTATTACTTTGATTTTTTTGAGTACTAATTTGTATTTTGAAACTTTTAAGATGACGAGAGGGTGGAAATAACAAATTAAATTTGAAAATGAACCAAAATAGAGGTGGCAATTAGGTAGAGGTTCTCGCAAAATGAATATTAAATATGTAGGGCCGTATTGTGAATTATGTGGATAATGTTTTTGCTTTCTATTTTTTTTTAAAAAAAATAATTATTACTTACAATAATCCAACGGGTATCCTCGTATGTGCCCATCCTACAAGTGATAAAATGATAAGTACCAGTCTACCATCAAGTTTGTAGGATAGAAACTATTTAGTATACATTGTTTTTGTCTTAATTTCTAGTTTTGGTATCCATCTAAATCGATACTCCATTATGTTAATTATTTCATTTCTTTCTTTTGACATCTACATCACTTTTTAATGTGGTTACCACTTGCTATAATCATACTTCACTTAGCATTTTATTTGAACTTAGTGAAAGTGAAATTTTTCCTAATAATTGGTCTAAAAATTGAAGAAGATTAAAGCCAAGAAATTGAGTTCTTCCTTCTTTCTTCCAACTTTGAAAGTACCGATAGATACTATCATATAAAAAGAAGAGGTGGTCTGACTAACTCAATGAAGTGAATTTTTCAAAAACATGCTCAGAAAAATGAGAAAAATGGAGTTTTTGAAAAGAAAAATTAACAGATATTTAAAGATAAATTTTTGAAATTTGGTTCAAAATTTATGGTCAAATATTAACTTATATTTATATATATACCTCTTCTAAAATGCTAATGAGAATTAGAATTTGCAGAGAGAAGAAATGGCAAAAGAATCCTACGATCAAGCCATTGCTGCACTCGAGAAACTCCTCAGGTTTGTACTCTCTCTACGACTCTACCTTCTAAATCACACTACTTTTTTCTCGATCAAGTGGGGCCCAAAAAATATACATACACCCACACATACGTAGACAAAAAAAATGTTAAAATTTGCGAATATGCAGAGAAAACATAATATAATCATGCAATGTTTACTCGTAAAATTCAATTTCCCGGCAATGAACATGTTACTTGGTTTCGAGTTCTCCAGATCTGCATTAATTTTACCATTCTATCATCATTTTTTTACCCCATATCTGCATTAATTTATCATGGTAATGGTGCTCAAACCACAAATCTTTTTTTTTTCTACCTGAAATATTGCTTCAATAATAATAATGGTCTAAATTATTTTCTGCAATTACAGCGAGAAAGCAGAACTTGGACCAGTTGCTGCAGCAAGAGTTGACCAGATCACTGCTGAATTGAAATCAGCAGACGGCGGCAAGGCATTCGACCCTGTTGAGCACATGAAAGCTGGCTTTATTCATTTCAAGACTGAGAAATATGAGTAAGCAAATTCATTCAAATTAAAATTTCTGCATATTTGATGTTGTAACATTATTAGTGTCTGATAATTTTTCCTGTTTTCTATTTATGTACCAACAGCACAAACCCAGCCTTATATGGTGAGCTAGCAAA</genome_strand>
        <mrna_strand>AAATGTCAACTGCTTCCATTAACAATTGCCTTACTCTCTCCCCTGCTCAAGCTTCCCTTAAGAAACCTACTCGTCCCGTTGCCTTCGCAAGGCTTGGCAACTCTTCTTCTTCTTCTTCTATTCCAAGTCTCATCAGAAACGAGCCCGTCTTTGCTGCCCCTACTCCCATCATCAACCCCATTGTG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGAGAAGAAATGGCAAAAGAATCCTACGATCAAGCCATTGCTGCACTCGAGAAACTCCTCAG....................................................................................................................................................................................................................................................................................................................................................................................CGAGAAAGCAGAACTTGGACCAGTTGCTGCAGCAAGAGTTGACCAGATCACTGCTGAATTGAAATCAGCAGACGGCGGCAAGGCATTCGACCCTGTTGAGCACATGAAAGCTGGCTTTATTCATTTCAAGACTGAGAAATATGA..................................................................................................CACAAACCCAGCCTTATATGGTGAGCTAGCAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0236E02-u8qcS/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E726475" ref_strand="+" ref_description="SGN-E726475 [LA11DF10]">
      <seq>gtcaactgcttccattaacaattgccttactctctcccctgctcaagcttcccttaagaaacctactcgtcccgttgccttcgcaaggcttggcaactcttcttcttcttcttctattccaagtctcatcagaaacgagcccgtctttgctgcccctactcccatcatcaaccccattgtgagagaagaaatggcaaaagaatcctacgatcaagccattgctgcactcgagaaactcctcagcgagaaagcagaacttggaccagttgctgcagcaagagttgaccagatcactgctgaattgaaatcagcagacggcggcaaggcattcgaccctgttgagcacatgaaagctggctttattcatttcaagactgagaaatatgacacaaacccagccttatatggtgagctagcaaagggccagagccctaagttcatggttttcgcgtgctctgactcacgagtctgcccatcccatgtcctcaacttccaacctggtgaggcattcatggttcgtaacatcgccaacatggtccctgcttatgacaaggtcaggtactctggagtaggagcagccattgaatacgccgttcttcatcttaaggtggagaacatcgttgtcattggccacagtgcttgtggaggtatcaaaggtctcatgtcactacctgaagatggtagtgaatcaactgcctttattgaggattgggtaaaaatttgtttacctgccaaggcaaaggttctggccgatcacggagggaaagaatttgcacatcaatgcacagcttgtgagaaggaagctgtgaacgtttcacttggaaatctgcttacgtatccattcgtg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0236E02-u8qcS/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0236E02.1" temp_strand="+" temp_description="C02HBa0236E02.1  AC215430.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0236E02 sequenced_by:kribb upload_account_name:korea">
        <position start="14702" stop="18141"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="15002" g_stop="15182" g_length="181"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="181" r_length="181" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="15183" i_stop="16379" i_length="1197">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.971" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="16380" g_stop="16441" g_length="62"/>
          <reference_exon_boundary r_type="cDNA" r_start="182" r_stop="243" r_length="62" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="16442" i_stop="16813" i_length="372">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="16814" g_stop="16957" g_length="144"/>
          <reference_exon_boundary r_type="cDNA" r_start="244" r_stop="387" r_length="144" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="16958" i_stop="17055" i_length="98">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="17056" g_stop="17104" g_length="49"/>
          <reference_exon_boundary r_type="cDNA" r_start="388" r_stop="436" r_length="49" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="17105" i_stop="17188" i_length="84">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.961" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="17189" g_stop="17305" g_length="117"/>
          <reference_exon_boundary r_type="cDNA" r_start="437" r_stop="553" r_length="117" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="17306" i_stop="17390" i_length="85">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.979" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="17391" g_stop="17530" g_length="140"/>
          <reference_exon_boundary r_type="cDNA" r_start="554" r_stop="693" r_length="140" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="17531" i_stop="17607" i_length="77">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.948" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="17608" g_stop="17713" g_length="106"/>
          <reference_exon_boundary r_type="cDNA" r_start="694" r_stop="799" r_length="106" r_score="1.000"/>
        </exon>
        <intron i_serial="7">
          <gDNA_intron_boundary i_start="17714" i_stop="17793" i_length="80">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="8">
          <gDNA_exon_boundary g_start="17794" g_stop="17841" g_length="48"/>
          <reference_exon_boundary r_type="cDNA" r_start="800" r_stop="847" r_length="48" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0236E02.1" gen_strand="+" ref_id="SGN-E726475" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>847</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0236E02.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E726475" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="15002" e_stop="15182"/>
          <exon e_start="16380" e_stop="16441"/>
          <exon e_start="16814" e_stop="16957"/>
          <exon e_start="17056" e_stop="17104"/>
          <exon e_start="17189" e_stop="17305"/>
          <exon e_start="17391" e_stop="17530"/>
          <exon e_start="17608" e_stop="17713"/>
          <exon e_start="17794" e_stop="17841"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTCAACTGCTTCCATTAACAATTGCCTTACTCTCTCCCCTGCTCAAGCTTCCCTTAAGAAACCTACTCGTCCCGTTGCCTTCGCAAGGCTTGGCAACTCTTCTTCTTCTTCTTCTATTCCAAGTCTCATCAGAAACGAGCCCGTCTTTGCTGCCCCTACTCCCATCATCAACCCCATTGTGGTACGAATTTTTAACTTACATCACTGTATTTTAATCTGTTATAACAAGTTATTTATATTTGACGTTACTTAATTTATTTTTTAAGCAAGACATTTTTTTTGTCTTATCGTATTTTTTGTAACGACTTGTGTCCATGCATGCTAGTTCACGTGAAAATTCAATATTGGCATAGTTCTAAACTTTAGTTTCTAACCACCTTTATTATTGGTATTGTTATTTTTGGCCATGAATCTCCTGAAGTTAGGTGAATTGATCATGTCGCTCTAAATTGTACACGTCTATTGCGTGTACTCAATGACATATAATATATTATTGCAATCCTAAAATAAGTGTTATTTTAATTTATTTTGAACTCATTAAAATAAATATGATATTTTACTGAGTTACTTATATTTATTACTTTGATTTTTTTGAGTACTAATTTGTATTTTGAAACTTTTAAGATGACGAGAGGGTGGAAATAACAAATTAAATTTGAAAATGAACCAAAATAGAGGTGGCAATTAGGTAGAGGTTCTCGCAAAATGAATATTAAATATGTAGGGCCGTATTGTGAATTATGTGGATAATGTTTTTGCTTTCTATTTTTTTTTAAAAAAAATAATTATTACTTACAATAATCCAACGGGTATCCTCGTATGTGCCCATCCTACAAGTGATAAAATGATAAGTACCAGTCTACCATCAAGTTTGTAGGATAGAAACTATTTAGTATACATTGTTTTTGTCTTAATTTCTAGTTTTGGTATCCATCTAAATCGATACTCCATTATGTTAATTATTTCATTTCTTTCTTTTGACATCTACATCACTTTTTAATGTGGTTACCACTTGCTATAATCATACTTCACTTAGCATTTTATTTGAACTTAGTGAAAGTGAAATTTTTCCTAATAATTGGTCTAAAAATTGAAGAAGATTAAAGCCAAGAAATTGAGTTCTTCCTTCTTTCTTCCAACTTTGAAAGTACCGATAGATACTATCATATAAAAAGAAGAGGTGGTCTGACTAACTCAATGAAGTGAATTTTTCAAAAACATGCTCAGAAAAATGAGAAAAATGGAGTTTTTGAAAAGAAAAATTAACAGATATTTAAAGATAAATTTTTGAAATTTGGTTCAAAATTTATGGTCAAATATTAACTTATATTTATATATATACCTCTTCTAAAATGCTAATGAGAATTAGAATTTGCAGAGAGAAGAAATGGCAAAAGAATCCTACGATCAAGCCATTGCTGCACTCGAGAAACTCCTCAGGTTTGTACTCTCTCTACGACTCTACCTTCTAAATCACACTACTTTTTTCTCGATCAAGTGGGGCCCAAAAAATATACATACACCCACACATACGTAGACAAAAAAAATGTTAAAATTTGCGAATATGCAGAGAAAACATAATATAATCATGCAATGTTTACTCGTAAAATTCAATTTCCCGGCAATGAACATGTTACTTGGTTTCGAGTTCTCCAGATCTGCATTAATTTTACCATTCTATCATCATTTTTTTACCCCATATCTGCATTAATTTATCATGGTAATGGTGCTCAAACCACAAATCTTTTTTTTTTCTACCTGAAATATTGCTTCAATAATAATAATGGTCTAAATTATTTTCTGCAATTACAGCGAGAAAGCAGAACTTGGACCAGTTGCTGCAGCAAGAGTTGACCAGATCACTGCTGAATTGAAATCAGCAGACGGCGGCAAGGCATTCGACCCTGTTGAGCACATGAAAGCTGGCTTTATTCATTTCAAGACTGAGAAATATGAGTAAGCAAATTCATTCAAATTAAAATTTCTGCATATTTGATGTTGTAACATTATTAGTGTCTGATAATTTTTCCTGTTTTCTATTTATGTACCAACAGCACAAACCCAGCCTTATATGGTGAGCTAGCAAAGGGCCAGAGCCCTAAGGTACAAATTCCTTGTTAATTTGTTGTCTAATTTTATGATTTGTACGGTTTCTGATGAGTTCTATTGTCCTAAATGTGTAAACAGTTCATGGTTTTCGCGTGCTCTGACTCACGAGTCTGCCCATCCCATGTCCTCAACTTCCAACCTGGTGAGGCATTCATGGTTCGTAACATCGCCAACATGGTCCCTGCTTATGACAAGGTCAGTTACAAATCGATCAACTAGTCGATTATTTCGCTCTGGAATTGTGTTTTTTAAAAATAAAGATGGAATTGAATTTTTACAGGTCAGGTACTCTGGAGTAGGAGCAGCCATTGAATACGCCGTTCTTCATCTTAAGGTGGAGAACATCGTTGTCATTGGCCACAGTGCTTGTGGAGGTATCAAAGGTCTCATGTCACTACCTGAAGATGGTAGTGAATCAACGTACGTCACTCTATAAATCTATTCATTCAAAACACTTATCCTTAACAGATGATTGATTAATAATCTAATATACGCAGTGCCTTTATTGAGGATTGGGTAAAAATTTGTTTACCTGCCAAGGCAAAGGTTCTGGCCGATCACGGAGGGAAAGAATTTGCACATCAATGCACAGCTTGTGAGAAGGTAAAATTCAAATTTAACTTTTTGATTATCAATTAATTACATATATAGCAGTATTTTATAATTGATGAAAAATGTTGCAGGAAGCTGTGAACGTTTCACTTGGAAATCTGCTTACGTATCCATTCGTG</genome_strand>
        <mrna_strand>GTCAACTGCTTCCATTAACAATTGCCTTACTCTCTCCCCTGCTCAAGCTTCCCTTAAGAAACCTACTCGTCCCGTTGCCTTCGCAAGGCTTGGCAACTCTTCTTCTTCTTCTTCTATTCCAAGTCTCATCAGAAACGAGCCCGTCTTTGCTGCCCCTACTCCCATCATCAACCCCATTGTG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGAGAAGAAATGGCAAAAGAATCCTACGATCAAGCCATTGCTGCACTCGAGAAACTCCTCAG....................................................................................................................................................................................................................................................................................................................................................................................CGAGAAAGCAGAACTTGGACCAGTTGCTGCAGCAAGAGTTGACCAGATCACTGCTGAATTGAAATCAGCAGACGGCGGCAAGGCATTCGACCCTGTTGAGCACATGAAAGCTGGCTTTATTCATTTCAAGACTGAGAAATATGA..................................................................................................CACAAACCCAGCCTTATATGGTGAGCTAGCAAAGGGCCAGAGCCCTAAG....................................................................................TTCATGGTTTTCGCGTGCTCTGACTCACGAGTCTGCCCATCCCATGTCCTCAACTTCCAACCTGGTGAGGCATTCATGGTTCGTAACATCGCCAACATGGTCCCTGCTTATGACAAG.....................................................................................GTCAGGTACTCTGGAGTAGGAGCAGCCATTGAATACGCCGTTCTTCATCTTAAGGTGGAGAACATCGTTGTCATTGGCCACAGTGCTTGTGGAGGTATCAAAGGTCTCATGTCACTACCTGAAGATGGTAGTGAATCAAC.............................................................................TGCCTTTATTGAGGATTGGGTAAAAATTTGTTTACCTGCCAAGGCAAAGGTTCTGGCCGATCACGGAGGGAAAGAATTTGCACATCAATGCACAGCTTGTGAGAAG................................................................................GAAGCTGTGAACGTTTCACTTGGAAATCTGCTTACGTATCCATTCGTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0236E02-u8qcS/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E737831" ref_strand="+" ref_description="SGN-E737831 [LC11BF01]">
      <seq>ggctgcaggaattcggcacgagggtcaactgcttccattaacaattgccttactctctcccctgctcaagcttcccttaagaaacctactcgtcccgttgccttcgcaaggcttggcaactcttcttcttcttcttctattccaagtctcatcagaaacgagcccgtctttgctgcccctactcccatcatcaaccccattgtgagagaagaaatggcaaaagaatcctacgatcaagccattgctgcactcgagaaactcctcagcgagaaagcagaacttggaccagttgctgcagcaagagttgaccagatcactgctgaattgaaatcagcagacggcggcaaggcattcgaccctgttgagcacatgaaagctggctttattcatttcaagactgagaaatatgacacaaacccagccttatatggtgagctagcaaagggccagagccctaagttcatggttttcgcgtgctctgactcacgagtctgcccatcccatgtcctcaacttccaacctggtgaggcattcatggttcgtaacatcgccaacatggtccctgcttatgacaaggtcaggtactctggagtaggagcagccattgaatacgccgttcttcatcttaaggtggagaacatcgttgtcattggccacagtgcttgtggaggtatcaaaggtctcatgtcactacctgaagatggtagtgaatcaactgcctttattgaggattgggtaaaaatttgtttacctgccaaggcaaaggttctggccgatcacggagggaaagaatttgcacatcaatgcacagcttgtg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0236E02-u8qcS/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0236E02.1" temp_strand="+" temp_description="C02HBa0236E02.1  AC215430.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0236E02 sequenced_by:kribb upload_account_name:korea">
        <position start="14702" stop="18008"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="15002" g_stop="15182" g_length="181"/>
          <reference_exon_boundary r_type="cDNA" r_start="24" r_stop="204" r_length="181" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="15183" i_stop="16379" i_length="1197">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.971" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="16380" g_stop="16441" g_length="62"/>
          <reference_exon_boundary r_type="cDNA" r_start="205" r_stop="266" r_length="62" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="16442" i_stop="16813" i_length="372">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="16814" g_stop="16957" g_length="144"/>
          <reference_exon_boundary r_type="cDNA" r_start="267" r_stop="410" r_length="144" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="16958" i_stop="17055" i_length="98">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="17056" g_stop="17104" g_length="49"/>
          <reference_exon_boundary r_type="cDNA" r_start="411" r_stop="459" r_length="49" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="17105" i_stop="17188" i_length="84">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.961" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="17189" g_stop="17305" g_length="117"/>
          <reference_exon_boundary r_type="cDNA" r_start="460" r_stop="576" r_length="117" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="17306" i_stop="17390" i_length="85">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.979" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="17391" g_stop="17530" g_length="140"/>
          <reference_exon_boundary r_type="cDNA" r_start="577" r_stop="716" r_length="140" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="17531" i_stop="17607" i_length="77">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.948" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="17608" g_stop="17708" g_length="101"/>
          <reference_exon_boundary r_type="cDNA" r_start="717" r_stop="817" r_length="101" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0236E02.1" gen_strand="+" ref_id="SGN-E737831" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>794</cumulative_length_of_scored_exons>
        <coverage percentage="0.972" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0236E02.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E737831" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="15002" e_stop="15182"/>
          <exon e_start="16380" e_stop="16441"/>
          <exon e_start="16814" e_stop="16957"/>
          <exon e_start="17056" e_stop="17104"/>
          <exon e_start="17189" e_stop="17305"/>
          <exon e_start="17391" e_stop="17530"/>
          <exon e_start="17608" e_stop="17708"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTCAACTGCTTCCATTAACAATTGCCTTACTCTCTCCCCTGCTCAAGCTTCCCTTAAGAAACCTACTCGTCCCGTTGCCTTCGCAAGGCTTGGCAACTCTTCTTCTTCTTCTTCTATTCCAAGTCTCATCAGAAACGAGCCCGTCTTTGCTGCCCCTACTCCCATCATCAACCCCATTGTGGTACGAATTTTTAACTTACATCACTGTATTTTAATCTGTTATAACAAGTTATTTATATTTGACGTTACTTAATTTATTTTTTAAGCAAGACATTTTTTTTGTCTTATCGTATTTTTTGTAACGACTTGTGTCCATGCATGCTAGTTCACGTGAAAATTCAATATTGGCATAGTTCTAAACTTTAGTTTCTAACCACCTTTATTATTGGTATTGTTATTTTTGGCCATGAATCTCCTGAAGTTAGGTGAATTGATCATGTCGCTCTAAATTGTACACGTCTATTGCGTGTACTCAATGACATATAATATATTATTGCAATCCTAAAATAAGTGTTATTTTAATTTATTTTGAACTCATTAAAATAAATATGATATTTTACTGAGTTACTTATATTTATTACTTTGATTTTTTTGAGTACTAATTTGTATTTTGAAACTTTTAAGATGACGAGAGGGTGGAAATAACAAATTAAATTTGAAAATGAACCAAAATAGAGGTGGCAATTAGGTAGAGGTTCTCGCAAAATGAATATTAAATATGTAGGGCCGTATTGTGAATTATGTGGATAATGTTTTTGCTTTCTATTTTTTTTTAAAAAAAATAATTATTACTTACAATAATCCAACGGGTATCCTCGTATGTGCCCATCCTACAAGTGATAAAATGATAAGTACCAGTCTACCATCAAGTTTGTAGGATAGAAACTATTTAGTATACATTGTTTTTGTCTTAATTTCTAGTTTTGGTATCCATCTAAATCGATACTCCATTATGTTAATTATTTCATTTCTTTCTTTTGACATCTACATCACTTTTTAATGTGGTTACCACTTGCTATAATCATACTTCACTTAGCATTTTATTTGAACTTAGTGAAAGTGAAATTTTTCCTAATAATTGGTCTAAAAATTGAAGAAGATTAAAGCCAAGAAATTGAGTTCTTCCTTCTTTCTTCCAACTTTGAAAGTACCGATAGATACTATCATATAAAAAGAAGAGGTGGTCTGACTAACTCAATGAAGTGAATTTTTCAAAAACATGCTCAGAAAAATGAGAAAAATGGAGTTTTTGAAAAGAAAAATTAACAGATATTTAAAGATAAATTTTTGAAATTTGGTTCAAAATTTATGGTCAAATATTAACTTATATTTATATATATACCTCTTCTAAAATGCTAATGAGAATTAGAATTTGCAGAGAGAAGAAATGGCAAAAGAATCCTACGATCAAGCCATTGCTGCACTCGAGAAACTCCTCAGGTTTGTACTCTCTCTACGACTCTACCTTCTAAATCACACTACTTTTTTCTCGATCAAGTGGGGCCCAAAAAATATACATACACCCACACATACGTAGACAAAAAAAATGTTAAAATTTGCGAATATGCAGAGAAAACATAATATAATCATGCAATGTTTACTCGTAAAATTCAATTTCCCGGCAATGAACATGTTACTTGGTTTCGAGTTCTCCAGATCTGCATTAATTTTACCATTCTATCATCATTTTTTTACCCCATATCTGCATTAATTTATCATGGTAATGGTGCTCAAACCACAAATCTTTTTTTTTTCTACCTGAAATATTGCTTCAATAATAATAATGGTCTAAATTATTTTCTGCAATTACAGCGAGAAAGCAGAACTTGGACCAGTTGCTGCAGCAAGAGTTGACCAGATCACTGCTGAATTGAAATCAGCAGACGGCGGCAAGGCATTCGACCCTGTTGAGCACATGAAAGCTGGCTTTATTCATTTCAAGACTGAGAAATATGAGTAAGCAAATTCATTCAAATTAAAATTTCTGCATATTTGATGTTGTAACATTATTAGTGTCTGATAATTTTTCCTGTTTTCTATTTATGTACCAACAGCACAAACCCAGCCTTATATGGTGAGCTAGCAAAGGGCCAGAGCCCTAAGGTACAAATTCCTTGTTAATTTGTTGTCTAATTTTATGATTTGTACGGTTTCTGATGAGTTCTATTGTCCTAAATGTGTAAACAGTTCATGGTTTTCGCGTGCTCTGACTCACGAGTCTGCCCATCCCATGTCCTCAACTTCCAACCTGGTGAGGCATTCATGGTTCGTAACATCGCCAACATGGTCCCTGCTTATGACAAGGTCAGTTACAAATCGATCAACTAGTCGATTATTTCGCTCTGGAATTGTGTTTTTTAAAAATAAAGATGGAATTGAATTTTTACAGGTCAGGTACTCTGGAGTAGGAGCAGCCATTGAATACGCCGTTCTTCATCTTAAGGTGGAGAACATCGTTGTCATTGGCCACAGTGCTTGTGGAGGTATCAAAGGTCTCATGTCACTACCTGAAGATGGTAGTGAATCAACGTACGTCACTCTATAAATCTATTCATTCAAAACACTTATCCTTAACAGATGATTGATTAATAATCTAATATACGCAGTGCCTTTATTGAGGATTGGGTAAAAATTTGTTTACCTGCCAAGGCAAAGGTTCTGGCCGATCACGGAGGGAAAGAATTTGCACATCAATGCACAGCTTGTG</genome_strand>
        <mrna_strand>GTCAACTGCTTCCATTAACAATTGCCTTACTCTCTCCCCTGCTCAAGCTTCCCTTAAGAAACCTACTCGTCCCGTTGCCTTCGCAAGGCTTGGCAACTCTTCTTCTTCTTCTTCTATTCCAAGTCTCATCAGAAACGAGCCCGTCTTTGCTGCCCCTACTCCCATCATCAACCCCATTGTG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGAGAAGAAATGGCAAAAGAATCCTACGATCAAGCCATTGCTGCACTCGAGAAACTCCTCAG....................................................................................................................................................................................................................................................................................................................................................................................CGAGAAAGCAGAACTTGGACCAGTTGCTGCAGCAAGAGTTGACCAGATCACTGCTGAATTGAAATCAGCAGACGGCGGCAAGGCATTCGACCCTGTTGAGCACATGAAAGCTGGCTTTATTCATTTCAAGACTGAGAAATATGA..................................................................................................CACAAACCCAGCCTTATATGGTGAGCTAGCAAAGGGCCAGAGCCCTAAG....................................................................................TTCATGGTTTTCGCGTGCTCTGACTCACGAGTCTGCCCATCCCATGTCCTCAACTTCCAACCTGGTGAGGCATTCATGGTTCGTAACATCGCCAACATGGTCCCTGCTTATGACAAG.....................................................................................GTCAGGTACTCTGGAGTAGGAGCAGCCATTGAATACGCCGTTCTTCATCTTAAGGTGGAGAACATCGTTGTCATTGGCCACAGTGCTTGTGGAGGTATCAAAGGTCTCATGTCACTACCTGAAGATGGTAGTGAATCAAC.............................................................................TGCCTTTATTGAGGATTGGGTAAAAATTTGTTTACCTGCCAAGGCAAAGGTTCTGGCCGATCACGGAGGGAAAGAATTTGCACATCAATGCACAGCTTGTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0236E02-u8qcS/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E730892" ref_strand="+" ref_description="SGN-E730892 [LA25CB03]">
      <seq>ccatttgcttccattaacaattgccttactctctcccctgctcaagcttcccttaagaaacctactcgtcccgttgccttcgcaaggcttggcaactcttcttcttcttcttctattccaagtctcatcagaaacgagcccgtctttgctgcccctactcccatcatcaaccccattgtgagagaagaaatggcaaaagaatcctacgatcaagccattgctgcactcgagaaactcctcagcgagaaagcagaacttggaccagttgctgcagcaagagttgaccagatcactgctgaattgaaatcagcagacggcggcaaggcattcgaccctgttgagcacatgaaagctggctttattcatttcaagactgagaaatatgacacaaacccagccttatatggtgagctagcaaagggccagagccctaagttcatggttttcgcgtgctctgactcacgagtctgcccatcccatgtcctcaacttccaacctggtgaggcattcatggttcgtaacatcgccaacatggtccctgcttatgacaaggtcaggtactctggagtaggagcagccattgaatacgccgttcttcatcttaaggtggagaacatcgttgtcattggccacagtgcttgtggaggtatcaaaggtctcatgtcactacctgaagatggtagtgaatcaactgcctttattgaggattgggtaaaaatttgtttacctgccaaggcaaaggttctggccgatcacggagggaaagaatttgcacatcaatgcacagc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0236E02-u8qcS/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0236E02.1" temp_strand="+" temp_description="C02HBa0236E02.1  AC215430.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0236E02 sequenced_by:kribb upload_account_name:korea">
        <position start="14704" stop="18003"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="15003" g_stop="15182" g_length="180"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="180" r_length="180" r_score="0.983"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="15183" i_stop="16379" i_length="1197">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.971" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="16380" g_stop="16441" g_length="62"/>
          <reference_exon_boundary r_type="cDNA" r_start="181" r_stop="242" r_length="62" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="16442" i_stop="16813" i_length="372">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="16814" g_stop="16957" g_length="144"/>
          <reference_exon_boundary r_type="cDNA" r_start="243" r_stop="386" r_length="144" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="16958" i_stop="17055" i_length="98">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="17056" g_stop="17104" g_length="49"/>
          <reference_exon_boundary r_type="cDNA" r_start="387" r_stop="435" r_length="49" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="17105" i_stop="17188" i_length="84">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.961" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="17189" g_stop="17305" g_length="117"/>
          <reference_exon_boundary r_type="cDNA" r_start="436" r_stop="552" r_length="117" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="17306" i_stop="17390" i_length="85">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.979" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="17391" g_stop="17530" g_length="140"/>
          <reference_exon_boundary r_type="cDNA" r_start="553" r_stop="692" r_length="140" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="17531" i_stop="17607" i_length="77">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.948" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="17608" g_stop="17703" g_length="96"/>
          <reference_exon_boundary r_type="cDNA" r_start="693" r_stop="788" r_length="96" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0236E02.1" gen_strand="+" ref_id="SGN-E730892" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>788</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0236E02.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E730892" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="15003" e_stop="15182"/>
          <exon e_start="16380" e_stop="16441"/>
          <exon e_start="16814" e_stop="16957"/>
          <exon e_start="17056" e_stop="17104"/>
          <exon e_start="17189" e_stop="17305"/>
          <exon e_start="17391" e_stop="17530"/>
          <exon e_start="17608" e_stop="17703"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCAACTGCTTCCATTAACAATTGCCTTACTCTCTCCCCTGCTCAAGCTTCCCTTAAGAAACCTACTCGTCCCGTTGCCTTCGCAAGGCTTGGCAACTCTTCTTCTTCTTCTTCTATTCCAAGTCTCATCAGAAACGAGCCCGTCTTTGCTGCCCCTACTCCCATCATCAACCCCATTGTGGTACGAATTTTTAACTTACATCACTGTATTTTAATCTGTTATAACAAGTTATTTATATTTGACGTTACTTAATTTATTTTTTAAGCAAGACATTTTTTTTGTCTTATCGTATTTTTTGTAACGACTTGTGTCCATGCATGCTAGTTCACGTGAAAATTCAATATTGGCATAGTTCTAAACTTTAGTTTCTAACCACCTTTATTATTGGTATTGTTATTTTTGGCCATGAATCTCCTGAAGTTAGGTGAATTGATCATGTCGCTCTAAATTGTACACGTCTATTGCGTGTACTCAATGACATATAATATATTATTGCAATCCTAAAATAAGTGTTATTTTAATTTATTTTGAACTCATTAAAATAAATATGATATTTTACTGAGTTACTTATATTTATTACTTTGATTTTTTTGAGTACTAATTTGTATTTTGAAACTTTTAAGATGACGAGAGGGTGGAAATAACAAATTAAATTTGAAAATGAACCAAAATAGAGGTGGCAATTAGGTAGAGGTTCTCGCAAAATGAATATTAAATATGTAGGGCCGTATTGTGAATTATGTGGATAATGTTTTTGCTTTCTATTTTTTTTTAAAAAAAATAATTATTACTTACAATAATCCAACGGGTATCCTCGTATGTGCCCATCCTACAAGTGATAAAATGATAAGTACCAGTCTACCATCAAGTTTGTAGGATAGAAACTATTTAGTATACATTGTTTTTGTCTTAATTTCTAGTTTTGGTATCCATCTAAATCGATACTCCATTATGTTAATTATTTCATTTCTTTCTTTTGACATCTACATCACTTTTTAATGTGGTTACCACTTGCTATAATCATACTTCACTTAGCATTTTATTTGAACTTAGTGAAAGTGAAATTTTTCCTAATAATTGGTCTAAAAATTGAAGAAGATTAAAGCCAAGAAATTGAGTTCTTCCTTCTTTCTTCCAACTTTGAAAGTACCGATAGATACTATCATATAAAAAGAAGAGGTGGTCTGACTAACTCAATGAAGTGAATTTTTCAAAAACATGCTCAGAAAAATGAGAAAAATGGAGTTTTTGAAAAGAAAAATTAACAGATATTTAAAGATAAATTTTTGAAATTTGGTTCAAAATTTATGGTCAAATATTAACTTATATTTATATATATACCTCTTCTAAAATGCTAATGAGAATTAGAATTTGCAGAGAGAAGAAATGGCAAAAGAATCCTACGATCAAGCCATTGCTGCACTCGAGAAACTCCTCAGGTTTGTACTCTCTCTACGACTCTACCTTCTAAATCACACTACTTTTTTCTCGATCAAGTGGGGCCCAAAAAATATACATACACCCACACATACGTAGACAAAAAAAATGTTAAAATTTGCGAATATGCAGAGAAAACATAATATAATCATGCAATGTTTACTCGTAAAATTCAATTTCCCGGCAATGAACATGTTACTTGGTTTCGAGTTCTCCAGATCTGCATTAATTTTACCATTCTATCATCATTTTTTTACCCCATATCTGCATTAATTTATCATGGTAATGGTGCTCAAACCACAAATCTTTTTTTTTTCTACCTGAAATATTGCTTCAATAATAATAATGGTCTAAATTATTTTCTGCAATTACAGCGAGAAAGCAGAACTTGGACCAGTTGCTGCAGCAAGAGTTGACCAGATCACTGCTGAATTGAAATCAGCAGACGGCGGCAAGGCATTCGACCCTGTTGAGCACATGAAAGCTGGCTTTATTCATTTCAAGACTGAGAAATATGAGTAAGCAAATTCATTCAAATTAAAATTTCTGCATATTTGATGTTGTAACATTATTAGTGTCTGATAATTTTTCCTGTTTTCTATTTATGTACCAACAGCACAAACCCAGCCTTATATGGTGAGCTAGCAAAGGGCCAGAGCCCTAAGGTACAAATTCCTTGTTAATTTGTTGTCTAATTTTATGATTTGTACGGTTTCTGATGAGTTCTATTGTCCTAAATGTGTAAACAGTTCATGGTTTTCGCGTGCTCTGACTCACGAGTCTGCCCATCCCATGTCCTCAACTTCCAACCTGGTGAGGCATTCATGGTTCGTAACATCGCCAACATGGTCCCTGCTTATGACAAGGTCAGTTACAAATCGATCAACTAGTCGATTATTTCGCTCTGGAATTGTGTTTTTTAAAAATAAAGATGGAATTGAATTTTTACAGGTCAGGTACTCTGGAGTAGGAGCAGCCATTGAATACGCCGTTCTTCATCTTAAGGTGGAGAACATCGTTGTCATTGGCCACAGTGCTTGTGGAGGTATCAAAGGTCTCATGTCACTACCTGAAGATGGTAGTGAATCAACGTACGTCACTCTATAAATCTATTCATTCAAAACACTTATCCTTAACAGATGATTGATTAATAATCTAATATACGCAGTGCCTTTATTGAGGATTGGGTAAAAATTTGTTTACCTGCCAAGGCAAAGGTTCTGGCCGATCACGGAGGGAAAGAATTTGCACATCAATGCACAGC</genome_strand>
        <mrna_strand>CCATTTGCTTCCATTAACAATTGCCTTACTCTCTCCCCTGCTCAAGCTTCCCTTAAGAAACCTACTCGTCCCGTTGCCTTCGCAAGGCTTGGCAACTCTTCTTCTTCTTCTTCTATTCCAAGTCTCATCAGAAACGAGCCCGTCTTTGCTGCCCCTACTCCCATCATCAACCCCATTGTG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGAGAAGAAATGGCAAAAGAATCCTACGATCAAGCCATTGCTGCACTCGAGAAACTCCTCAG....................................................................................................................................................................................................................................................................................................................................................................................CGAGAAAGCAGAACTTGGACCAGTTGCTGCAGCAAGAGTTGACCAGATCACTGCTGAATTGAAATCAGCAGACGGCGGCAAGGCATTCGACCCTGTTGAGCACATGAAAGCTGGCTTTATTCATTTCAAGACTGAGAAATATGA..................................................................................................CACAAACCCAGCCTTATATGGTGAGCTAGCAAAGGGCCAGAGCCCTAAG....................................................................................TTCATGGTTTTCGCGTGCTCTGACTCACGAGTCTGCCCATCCCATGTCCTCAACTTCCAACCTGGTGAGGCATTCATGGTTCGTAACATCGCCAACATGGTCCCTGCTTATGACAAG.....................................................................................GTCAGGTACTCTGGAGTAGGAGCAGCCATTGAATACGCCGTTCTTCATCTTAAGGTGGAGAACATCGTTGTCATTGGCCACAGTGCTTGTGGAGGTATCAAAGGTCTCATGTCACTACCTGAAGATGGTAGTGAATCAAC.............................................................................TGCCTTTATTGAGGATTGGGTAAAAATTTGTTTACCTGCCAAGGCAAAGGTTCTGGCCGATCACGGAGGGAAAGAATTTGCACATCAATGCACAGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0236E02-u8qcS/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E358258" ref_strand="+" ref_description="SGN-E358258 [cLHT-28-G10]">
      <seq>tcaactgcttccattaacaattgcctcactctctcccctgctcaagcttcccttaagaaacctactcgtcccgttgccttcgcaaggcttggcaactcttcttcttcttcttcttctattccaagtctcatcagaaacgagcccgtctttgctgcccctactcccatcatcaaccccattgtgagagaagaaatggcaaaagaatcctacgatcaggccattgctgcactcgagaaactcctcagcgagaaagcagaacttggaccagttgctgcagcaagagttgatcagatcactgctgaattgaaatcagcagatggcggcaaggcattcgaccctgttgagcacatgaaagctggctttattcatttcaagactgagaaatatgatacaaacccagccttatatggtgaactagcaaagggccagagccctaagttcatggttttcgcgtgctctgactcacgagtgtgcccatcccatgtcctcaacttccaacctggtgaggcattcatggttcgtaacatcgccaacatggtccctgcttatgaca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0236E02-u8qcS/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0236E02.1" temp_strand="+" temp_description="C02HBa0236E02.1  AC215430.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0236E02 sequenced_by:kribb upload_account_name:korea">
        <position start="14703" stop="17603"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="15003" g_stop="15182" g_length="180"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="183" r_length="183" r_score="0.961"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="15183" i_stop="16379" i_length="1197">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.971" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="16380" g_stop="16441" g_length="62"/>
          <reference_exon_boundary r_type="cDNA" r_start="184" r_stop="245" r_length="62" r_score="0.984"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="16442" i_stop="16813" i_length="372">
            <donor d_prob="0.999" d_score="0.98"/>
            <acceptor a_prob="1.000" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="16814" g_stop="16957" g_length="144"/>
          <reference_exon_boundary r_type="cDNA" r_start="246" r_stop="389" r_length="144" r_score="0.986"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="16958" i_stop="17055" i_length="98">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="17056" g_stop="17104" g_length="49"/>
          <reference_exon_boundary r_type="cDNA" r_start="390" r_stop="438" r_length="49" r_score="0.959"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="17105" i_stop="17188" i_length="84">
            <donor d_prob="1.000" d_score="0.96"/>
            <acceptor a_prob="0.961" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="17189" g_stop="17303" g_length="115"/>
          <reference_exon_boundary r_type="cDNA" r_start="439" r_stop="553" r_length="115" r_score="0.991"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0236E02.1" gen_strand="+" ref_id="SGN-E358258" ref_strand="+">
        <total_alignment_score>0.978</total_alignment_score>
        <cumulative_length_of_scored_exons>550</cumulative_length_of_scored_exons>
        <coverage percentage="0.995" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0236E02.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E358258" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="15003" e_stop="15182"/>
          <exon e_start="16380" e_stop="16441"/>
          <exon e_start="16814" e_stop="16957"/>
          <exon e_start="17056" e_stop="17104"/>
          <exon e_start="17189" e_stop="17303"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCAACTGCTTCCATTAACAATTGCCTTACTCTCTCCCCTGCTCAAGCTTCCCTTAAGAAACCTACTCGTCCCGTTGCCTTCGCAAGGCTTGGCAA--C-TCTTCTTCTTCTTCTTCTATTCCAAGTCTCATCAGAAACGAGCCCGTCTTTGCTGCCCCTACTCCCATCATCAACCCCATTGTGGTACGAATTTTTAACTTACATCACTGTATTTTAATCTGTTATAACAAGTTATTTATATTTGACGTTACTTAATTTATTTTTTAAGCAAGACATTTTTTTTGTCTTATCGTATTTTTTGTAACGACTTGTGTCCATGCATGCTAGTTCACGTGAAAATTCAATATTGGCATAGTTCTAAACTTTAGTTTCTAACCACCTTTATTATTGGTATTGTTATTTTTGGCCATGAATCTCCTGAAGTTAGGTGAATTGATCATGTCGCTCTAAATTGTACACGTCTATTGCGTGTACTCAATGACATATAATATATTATTGCAATCCTAAAATAAGTGTTATTTTAATTTATTTTGAACTCATTAAAATAAATATGATATTTTACTGAGTTACTTATATTTATTACTTTGATTTTTTTGAGTACTAATTTGTATTTTGAAACTTTTAAGATGACGAGAGGGTGGAAATAACAAATTAAATTTGAAAATGAACCAAAATAGAGGTGGCAATTAGGTAGAGGTTCTCGCAAAATGAATATTAAATATGTAGGGCCGTATTGTGAATTATGTGGATAATGTTTTTGCTTTCTATTTTTTTTTAAAAAAAATAATTATTACTTACAATAATCCAACGGGTATCCTCGTATGTGCCCATCCTACAAGTGATAAAATGATAAGTACCAGTCTACCATCAAGTTTGTAGGATAGAAACTATTTAGTATACATTGTTTTTGTCTTAATTTCTAGTTTTGGTATCCATCTAAATCGATACTCCATTATGTTAATTATTTCATTTCTTTCTTTTGACATCTACATCACTTTTTAATGTGGTTACCACTTGCTATAATCATACTTCACTTAGCATTTTATTTGAACTTAGTGAAAGTGAAATTTTTCCTAATAATTGGTCTAAAAATTGAAGAAGATTAAAGCCAAGAAATTGAGTTCTTCCTTCTTTCTTCCAACTTTGAAAGTACCGATAGATACTATCATATAAAAAGAAGAGGTGGTCTGACTAACTCAATGAAGTGAATTTTTCAAAAACATGCTCAGAAAAATGAGAAAAATGGAGTTTTTGAAAAGAAAAATTAACAGATATTTAAAGATAAATTTTTGAAATTTGGTTCAAAATTTATGGTCAAATATTAACTTATATTTATATATATACCTCTTCTAAAATGCTAATGAGAATTAGAATTTGCAGAGAGAAGAAATGGCAAAAGAATCCTACGATCAAGCCATTGCTGCACTCGAGAAACTCCTCAGGTTTGTACTCTCTCTACGACTCTACCTTCTAAATCACACTACTTTTTTCTCGATCAAGTGGGGCCCAAAAAATATACATACACCCACACATACGTAGACAAAAAAAATGTTAAAATTTGCGAATATGCAGAGAAAACATAATATAATCATGCAATGTTTACTCGTAAAATTCAATTTCCCGGCAATGAACATGTTACTTGGTTTCGAGTTCTCCAGATCTGCATTAATTTTACCATTCTATCATCATTTTTTTACCCCATATCTGCATTAATTTATCATGGTAATGGTGCTCAAACCACAAATCTTTTTTTTTTCTACCTGAAATATTGCTTCAATAATAATAATGGTCTAAATTATTTTCTGCAATTACAGCGAGAAAGCAGAACTTGGACCAGTTGCTGCAGCAAGAGTTGACCAGATCACTGCTGAATTGAAATCAGCAGACGGCGGCAAGGCATTCGACCCTGTTGAGCACATGAAAGCTGGCTTTATTCATTTCAAGACTGAGAAATATGAGTAAGCAAATTCATTCAAATTAAAATTTCTGCATATTTGATGTTGTAACATTATTAGTGTCTGATAATTTTTCCTGTTTTCTATTTATGTACCAACAGCACAAACCCAGCCTTATATGGTGAGCTAGCAAAGGGCCAGAGCCCTAAGGTACAAATTCCTTGTTAATTTGTTGTCTAATTTTATGATTTGTACGGTTTCTGATGAGTTCTATTGTCCTAAATGTGTAAACAGTTCATGGTTTTCGCGTGCTCTGACTCACGAGTCTGCCCATCCCATGTCCTCAACTTCCAACCTGGTGAGGCATTCATGGTTCGTAACATCGCCAACATGGTCCCTGCTTATGACA</genome_strand>
        <mrna_strand>TCAACTGCTTCCATTAACAATTGCCTCACTCTCTCCCCTGCTCAAGCTTCCCTTAAGAAACCTACTCGTCCCGTTGCCTTCGCAAGGCTTGGCAACTCTTCTTCTTCTTCTTCTTCTATTCCAAGTCTCATCAGAAACGAGCCCGTCTTTGCTGCCCCTACTCCCATCATCAACCCCATTGTG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGAGAAGAAATGGCAAAAGAATCCTACGATCAGGCCATTGCTGCACTCGAGAAACTCCTCAG....................................................................................................................................................................................................................................................................................................................................................................................CGAGAAAGCAGAACTTGGACCAGTTGCTGCAGCAAGAGTTGATCAGATCACTGCTGAATTGAAATCAGCAGATGGCGGCAAGGCATTCGACCCTGTTGAGCACATGAAAGCTGGCTTTATTCATTTCAAGACTGAGAAATATGA..................................................................................................TACAAACCCAGCCTTATATGGTGAACTAGCAAAGGGCCAGAGCCCTAAG....................................................................................TTCATGGTTTTCGCGTGCTCTGACTCACGAGTGTGCCCATCCCATGTCCTCAACTTCCAACCTGGTGAGGCATTCATGGTTCGTAACATCGCCAACATGGTCCCTGCTTATGACA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0236E02-u8qcS/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E293576" ref_strand="-" ref_description="SGN-E293576 [cLET-15-L13](-)">
      <seq>tcaactgcttccattaacaattgccttactctctcccctgctcaagcttcccttaagaaacctactcgtcccgttgccttcgcaaggcttggcaactcttcttcttcttcttctattccaagtctcatcagaaacgagcccgtctttgctgcccctactcccatcatcaaccccattgtgagagaagaaatggcaaaagaatcctacgatcaagccattgctgcactcgagaaactcctcagcgagaaagcagaacttggaccagttgctgcagcaagagttgaccagatcactgctgaattgaaatcagcagacggcggcgaggcattcgaccctgttgagcacatgaaagctggctttattcatttcaagactgagaaatatgacacaaacccagccttatatggtgagctagcaaagggccagagccctaagttcatggttttcgcgtgctctgactcacgagtctgcccatcccatgtcctcaacttccaacctggtgaggcattcatggttcgtaacatcg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0236E02-u8qcS/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0236E02.1" temp_strand="+" temp_description="C02HBa0236E02.1  AC215430.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0236E02 sequenced_by:kribb upload_account_name:korea">
        <position start="14703" stop="17579"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="15003" g_stop="15182" g_length="180"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="180" r_length="180" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="15183" i_stop="16379" i_length="1197">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.971" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="16380" g_stop="16441" g_length="62"/>
          <reference_exon_boundary r_type="cDNA" r_start="181" r_stop="242" r_length="62" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="16442" i_stop="16813" i_length="372">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="16814" g_stop="16957" g_length="144"/>
          <reference_exon_boundary r_type="cDNA" r_start="243" r_stop="386" r_length="144" r_score="0.993"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="16958" i_stop="17055" i_length="98">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="17056" g_stop="17104" g_length="49"/>
          <reference_exon_boundary r_type="cDNA" r_start="387" r_stop="435" r_length="49" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="17105" i_stop="17188" i_length="84">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.961" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="17189" g_stop="17279" g_length="91"/>
          <reference_exon_boundary r_type="cDNA" r_start="436" r_stop="526" r_length="91" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0236E02.1" gen_strand="+" ref_id="SGN-E293576" ref_strand="-">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>526</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0236E02.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E293576" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="15003" e_stop="15182"/>
          <exon e_start="16380" e_stop="16441"/>
          <exon e_start="16814" e_stop="16957"/>
          <exon e_start="17056" e_stop="17104"/>
          <exon e_start="17189" e_stop="17279"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCAACTGCTTCCATTAACAATTGCCTTACTCTCTCCCCTGCTCAAGCTTCCCTTAAGAAACCTACTCGTCCCGTTGCCTTCGCAAGGCTTGGCAACTCTTCTTCTTCTTCTTCTATTCCAAGTCTCATCAGAAACGAGCCCGTCTTTGCTGCCCCTACTCCCATCATCAACCCCATTGTGGTACGAATTTTTAACTTACATCACTGTATTTTAATCTGTTATAACAAGTTATTTATATTTGACGTTACTTAATTTATTTTTTAAGCAAGACATTTTTTTTGTCTTATCGTATTTTTTGTAACGACTTGTGTCCATGCATGCTAGTTCACGTGAAAATTCAATATTGGCATAGTTCTAAACTTTAGTTTCTAACCACCTTTATTATTGGTATTGTTATTTTTGGCCATGAATCTCCTGAAGTTAGGTGAATTGATCATGTCGCTCTAAATTGTACACGTCTATTGCGTGTACTCAATGACATATAATATATTATTGCAATCCTAAAATAAGTGTTATTTTAATTTATTTTGAACTCATTAAAATAAATATGATATTTTACTGAGTTACTTATATTTATTACTTTGATTTTTTTGAGTACTAATTTGTATTTTGAAACTTTTAAGATGACGAGAGGGTGGAAATAACAAATTAAATTTGAAAATGAACCAAAATAGAGGTGGCAATTAGGTAGAGGTTCTCGCAAAATGAATATTAAATATGTAGGGCCGTATTGTGAATTATGTGGATAATGTTTTTGCTTTCTATTTTTTTTTAAAAAAAATAATTATTACTTACAATAATCCAACGGGTATCCTCGTATGTGCCCATCCTACAAGTGATAAAATGATAAGTACCAGTCTACCATCAAGTTTGTAGGATAGAAACTATTTAGTATACATTGTTTTTGTCTTAATTTCTAGTTTTGGTATCCATCTAAATCGATACTCCATTATGTTAATTATTTCATTTCTTTCTTTTGACATCTACATCACTTTTTAATGTGGTTACCACTTGCTATAATCATACTTCACTTAGCATTTTATTTGAACTTAGTGAAAGTGAAATTTTTCCTAATAATTGGTCTAAAAATTGAAGAAGATTAAAGCCAAGAAATTGAGTTCTTCCTTCTTTCTTCCAACTTTGAAAGTACCGATAGATACTATCATATAAAAAGAAGAGGTGGTCTGACTAACTCAATGAAGTGAATTTTTCAAAAACATGCTCAGAAAAATGAGAAAAATGGAGTTTTTGAAAAGAAAAATTAACAGATATTTAAAGATAAATTTTTGAAATTTGGTTCAAAATTTATGGTCAAATATTAACTTATATTTATATATATACCTCTTCTAAAATGCTAATGAGAATTAGAATTTGCAGAGAGAAGAAATGGCAAAAGAATCCTACGATCAAGCCATTGCTGCACTCGAGAAACTCCTCAGGTTTGTACTCTCTCTACGACTCTACCTTCTAAATCACACTACTTTTTTCTCGATCAAGTGGGGCCCAAAAAATATACATACACCCACACATACGTAGACAAAAAAAATGTTAAAATTTGCGAATATGCAGAGAAAACATAATATAATCATGCAATGTTTACTCGTAAAATTCAATTTCCCGGCAATGAACATGTTACTTGGTTTCGAGTTCTCCAGATCTGCATTAATTTTACCATTCTATCATCATTTTTTTACCCCATATCTGCATTAATTTATCATGGTAATGGTGCTCAAACCACAAATCTTTTTTTTTTCTACCTGAAATATTGCTTCAATAATAATAATGGTCTAAATTATTTTCTGCAATTACAGCGAGAAAGCAGAACTTGGACCAGTTGCTGCAGCAAGAGTTGACCAGATCACTGCTGAATTGAAATCAGCAGACGGCGGCAAGGCATTCGACCCTGTTGAGCACATGAAAGCTGGCTTTATTCATTTCAAGACTGAGAAATATGAGTAAGCAAATTCATTCAAATTAAAATTTCTGCATATTTGATGTTGTAACATTATTAGTGTCTGATAATTTTTCCTGTTTTCTATTTATGTACCAACAGCACAAACCCAGCCTTATATGGTGAGCTAGCAAAGGGCCAGAGCCCTAAGGTACAAATTCCTTGTTAATTTGTTGTCTAATTTTATGATTTGTACGGTTTCTGATGAGTTCTATTGTCCTAAATGTGTAAACAGTTCATGGTTTTCGCGTGCTCTGACTCACGAGTCTGCCCATCCCATGTCCTCAACTTCCAACCTGGTGAGGCATTCATGGTTCGTAACATCG</genome_strand>
        <mrna_strand>TCAACTGCTTCCATTAACAATTGCCTTACTCTCTCCCCTGCTCAAGCTTCCCTTAAGAAACCTACTCGTCCCGTTGCCTTCGCAAGGCTTGGCAACTCTTCTTCTTCTTCTTCTATTCCAAGTCTCATCAGAAACGAGCCCGTCTTTGCTGCCCCTACTCCCATCATCAACCCCATTGTG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGAGAAGAAATGGCAAAAGAATCCTACGATCAAGCCATTGCTGCACTCGAGAAACTCCTCAG....................................................................................................................................................................................................................................................................................................................................................................................CGAGAAAGCAGAACTTGGACCAGTTGCTGCAGCAAGAGTTGACCAGATCACTGCTGAATTGAAATCAGCAGACGGCGGCGAGGCATTCGACCCTGTTGAGCACATGAAAGCTGGCTTTATTCATTTCAAGACTGAGAAATATGA..................................................................................................CACAAACCCAGCCTTATATGGTGAGCTAGCAAAGGGCCAGAGCCCTAAG....................................................................................TTCATGGTTTTCGCGTGCTCTGACTCACGAGTCTGCCCATCCCATGTCCTCAACTTCCAACCTGGTGAGGCATTCATGGTTCGTAACATCG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0236E02-u8qcS/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E293575" ref_strand="+" ref_description="SGN-E293575 [cLET-15-L13]">
      <seq>tcaactgcttccattaacaattgccttactctctcccctgctcaagcttcccttaagaaacctactcgtcccgttgccttcgcaaggcttggcaactcttcttcttcttcttctattccaagtctcatcagaaacgagcccgtctttgctgcccctactcccatcatcaaccccattgtgagagaagaaatggcaaaagaatcctacgatcaagccattgctgcactcgagaaactcctcagcgagaaagcagaacttggaccagttgctgcagcaagagttgaccagatcactgctgaattgaaatcagcagacggcggcgaggcattcgaccctgttgagcacatgaaagctggctttattcatttcaagactgagaaatatgacacaaacccagccttatatggtgagctagcaaagggccagagccctaagttcatggttttcgcgtgctctgactcacgagtctgcccatcccatgtcctcaacttccaacctggtgaggcattcatggttcgtaacatcg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0236E02-u8qcS/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0236E02.1" temp_strand="+" temp_description="C02HBa0236E02.1  AC215430.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0236E02 sequenced_by:kribb upload_account_name:korea">
        <position start="14703" stop="17579"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="15003" g_stop="15182" g_length="180"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="180" r_length="180" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="15183" i_stop="16379" i_length="1197">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.971" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="16380" g_stop="16441" g_length="62"/>
          <reference_exon_boundary r_type="cDNA" r_start="181" r_stop="242" r_length="62" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="16442" i_stop="16813" i_length="372">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="16814" g_stop="16957" g_length="144"/>
          <reference_exon_boundary r_type="cDNA" r_start="243" r_stop="386" r_length="144" r_score="0.993"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="16958" i_stop="17055" i_length="98">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="17056" g_stop="17104" g_length="49"/>
          <reference_exon_boundary r_type="cDNA" r_start="387" r_stop="435" r_length="49" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="17105" i_stop="17188" i_length="84">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.961" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="17189" g_stop="17279" g_length="91"/>
          <reference_exon_boundary r_type="cDNA" r_start="436" r_stop="526" r_length="91" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0236E02.1" gen_strand="+" ref_id="SGN-E293575" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>526</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0236E02.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E293575" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="15003" e_stop="15182"/>
          <exon e_start="16380" e_stop="16441"/>
          <exon e_start="16814" e_stop="16957"/>
          <exon e_start="17056" e_stop="17104"/>
          <exon e_start="17189" e_stop="17279"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCAACTGCTTCCATTAACAATTGCCTTACTCTCTCCCCTGCTCAAGCTTCCCTTAAGAAACCTACTCGTCCCGTTGCCTTCGCAAGGCTTGGCAACTCTTCTTCTTCTTCTTCTATTCCAAGTCTCATCAGAAACGAGCCCGTCTTTGCTGCCCCTACTCCCATCATCAACCCCATTGTGGTACGAATTTTTAACTTACATCACTGTATTTTAATCTGTTATAACAAGTTATTTATATTTGACGTTACTTAATTTATTTTTTAAGCAAGACATTTTTTTTGTCTTATCGTATTTTTTGTAACGACTTGTGTCCATGCATGCTAGTTCACGTGAAAATTCAATATTGGCATAGTTCTAAACTTTAGTTTCTAACCACCTTTATTATTGGTATTGTTATTTTTGGCCATGAATCTCCTGAAGTTAGGTGAATTGATCATGTCGCTCTAAATTGTACACGTCTATTGCGTGTACTCAATGACATATAATATATTATTGCAATCCTAAAATAAGTGTTATTTTAATTTATTTTGAACTCATTAAAATAAATATGATATTTTACTGAGTTACTTATATTTATTACTTTGATTTTTTTGAGTACTAATTTGTATTTTGAAACTTTTAAGATGACGAGAGGGTGGAAATAACAAATTAAATTTGAAAATGAACCAAAATAGAGGTGGCAATTAGGTAGAGGTTCTCGCAAAATGAATATTAAATATGTAGGGCCGTATTGTGAATTATGTGGATAATGTTTTTGCTTTCTATTTTTTTTTAAAAAAAATAATTATTACTTACAATAATCCAACGGGTATCCTCGTATGTGCCCATCCTACAAGTGATAAAATGATAAGTACCAGTCTACCATCAAGTTTGTAGGATAGAAACTATTTAGTATACATTGTTTTTGTCTTAATTTCTAGTTTTGGTATCCATCTAAATCGATACTCCATTATGTTAATTATTTCATTTCTTTCTTTTGACATCTACATCACTTTTTAATGTGGTTACCACTTGCTATAATCATACTTCACTTAGCATTTTATTTGAACTTAGTGAAAGTGAAATTTTTCCTAATAATTGGTCTAAAAATTGAAGAAGATTAAAGCCAAGAAATTGAGTTCTTCCTTCTTTCTTCCAACTTTGAAAGTACCGATAGATACTATCATATAAAAAGAAGAGGTGGTCTGACTAACTCAATGAAGTGAATTTTTCAAAAACATGCTCAGAAAAATGAGAAAAATGGAGTTTTTGAAAAGAAAAATTAACAGATATTTAAAGATAAATTTTTGAAATTTGGTTCAAAATTTATGGTCAAATATTAACTTATATTTATATATATACCTCTTCTAAAATGCTAATGAGAATTAGAATTTGCAGAGAGAAGAAATGGCAAAAGAATCCTACGATCAAGCCATTGCTGCACTCGAGAAACTCCTCAGGTTTGTACTCTCTCTACGACTCTACCTTCTAAATCACACTACTTTTTTCTCGATCAAGTGGGGCCCAAAAAATATACATACACCCACACATACGTAGACAAAAAAAATGTTAAAATTTGCGAATATGCAGAGAAAACATAATATAATCATGCAATGTTTACTCGTAAAATTCAATTTCCCGGCAATGAACATGTTACTTGGTTTCGAGTTCTCCAGATCTGCATTAATTTTACCATTCTATCATCATTTTTTTACCCCATATCTGCATTAATTTATCATGGTAATGGTGCTCAAACCACAAATCTTTTTTTTTTCTACCTGAAATATTGCTTCAATAATAATAATGGTCTAAATTATTTTCTGCAATTACAGCGAGAAAGCAGAACTTGGACCAGTTGCTGCAGCAAGAGTTGACCAGATCACTGCTGAATTGAAATCAGCAGACGGCGGCAAGGCATTCGACCCTGTTGAGCACATGAAAGCTGGCTTTATTCATTTCAAGACTGAGAAATATGAGTAAGCAAATTCATTCAAATTAAAATTTCTGCATATTTGATGTTGTAACATTATTAGTGTCTGATAATTTTTCCTGTTTTCTATTTATGTACCAACAGCACAAACCCAGCCTTATATGGTGAGCTAGCAAAGGGCCAGAGCCCTAAGGTACAAATTCCTTGTTAATTTGTTGTCTAATTTTATGATTTGTACGGTTTCTGATGAGTTCTATTGTCCTAAATGTGTAAACAGTTCATGGTTTTCGCGTGCTCTGACTCACGAGTCTGCCCATCCCATGTCCTCAACTTCCAACCTGGTGAGGCATTCATGGTTCGTAACATCG</genome_strand>
        <mrna_strand>TCAACTGCTTCCATTAACAATTGCCTTACTCTCTCCCCTGCTCAAGCTTCCCTTAAGAAACCTACTCGTCCCGTTGCCTTCGCAAGGCTTGGCAACTCTTCTTCTTCTTCTTCTATTCCAAGTCTCATCAGAAACGAGCCCGTCTTTGCTGCCCCTACTCCCATCATCAACCCCATTGTG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGAGAAGAAATGGCAAAAGAATCCTACGATCAAGCCATTGCTGCACTCGAGAAACTCCTCAG....................................................................................................................................................................................................................................................................................................................................................................................CGAGAAAGCAGAACTTGGACCAGTTGCTGCAGCAAGAGTTGACCAGATCACTGCTGAATTGAAATCAGCAGACGGCGGCGAGGCATTCGACCCTGTTGAGCACATGAAAGCTGGCTTTATTCATTTCAAGACTGAGAAATATGA..................................................................................................CACAAACCCAGCCTTATATGGTGAGCTAGCAAAGGGCCAGAGCCCTAAG....................................................................................TTCATGGTTTTCGCGTGCTCTGACTCACGAGTCTGCCCATCCCATGTCCTCAACTTCCAACCTGGTGAGGCATTCATGGTTCGTAACATCG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0236E02-u8qcS/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E292491" ref_strand="+" ref_description="SGN-E292491 [cLET-16-B6]">
      <seq>tcaactgcttccattaacaattgccttactctctcccctgctcaagcttcccttaagaaacctactcgtcccgttgccttcgcaaggcttggcaactcttcttcttcttcttctattccaagtctcatcagaaacgagcccgtctttgctgcccctactcccatcatcaaccccattgtgagagaagaaatggcaaaagaatcctacgatcaagccattgctgcactcgagaaactcctcagcgagaaagcagaacttggaccagttgctgcagcaagagttgaccagatcactgctgaattgaaatcagcagacggcggcaaggcattcgaccctgttgagcacatgaaagctggctttattcatttcaagactgagaaatatgacacaaacccagccttatatggtgagctagcaaagggccagagccctaagttcatggttttcgcgtgctctgactcacgagtctgcccat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0236E02-u8qcS/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0236E02.1" temp_strand="+" temp_description="C02HBa0236E02.1  AC215430.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0236E02 sequenced_by:kribb upload_account_name:korea">
        <position start="14703" stop="17528"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="15003" g_stop="15182" g_length="180"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="180" r_length="180" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="15183" i_stop="16379" i_length="1197">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.971" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="16380" g_stop="16441" g_length="62"/>
          <reference_exon_boundary r_type="cDNA" r_start="181" r_stop="242" r_length="62" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="16442" i_stop="16813" i_length="372">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="16814" g_stop="16957" g_length="144"/>
          <reference_exon_boundary r_type="cDNA" r_start="243" r_stop="386" r_length="144" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="16958" i_stop="17055" i_length="98">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="17056" g_stop="17104" g_length="49"/>
          <reference_exon_boundary r_type="cDNA" r_start="387" r_stop="435" r_length="49" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="17105" i_stop="17188" i_length="84">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.961" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="17189" g_stop="17228" g_length="40"/>
          <reference_exon_boundary r_type="cDNA" r_start="436" r_stop="475" r_length="40" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0236E02.1" gen_strand="+" ref_id="SGN-E292491" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>475</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0236E02.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E292491" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="15003" e_stop="15182"/>
          <exon e_start="16380" e_stop="16441"/>
          <exon e_start="16814" e_stop="16957"/>
          <exon e_start="17056" e_stop="17104"/>
          <exon e_start="17189" e_stop="17228"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCAACTGCTTCCATTAACAATTGCCTTACTCTCTCCCCTGCTCAAGCTTCCCTTAAGAAACCTACTCGTCCCGTTGCCTTCGCAAGGCTTGGCAACTCTTCTTCTTCTTCTTCTATTCCAAGTCTCATCAGAAACGAGCCCGTCTTTGCTGCCCCTACTCCCATCATCAACCCCATTGTGGTACGAATTTTTAACTTACATCACTGTATTTTAATCTGTTATAACAAGTTATTTATATTTGACGTTACTTAATTTATTTTTTAAGCAAGACATTTTTTTTGTCTTATCGTATTTTTTGTAACGACTTGTGTCCATGCATGCTAGTTCACGTGAAAATTCAATATTGGCATAGTTCTAAACTTTAGTTTCTAACCACCTTTATTATTGGTATTGTTATTTTTGGCCATGAATCTCCTGAAGTTAGGTGAATTGATCATGTCGCTCTAAATTGTACACGTCTATTGCGTGTACTCAATGACATATAATATATTATTGCAATCCTAAAATAAGTGTTATTTTAATTTATTTTGAACTCATTAAAATAAATATGATATTTTACTGAGTTACTTATATTTATTACTTTGATTTTTTTGAGTACTAATTTGTATTTTGAAACTTTTAAGATGACGAGAGGGTGGAAATAACAAATTAAATTTGAAAATGAACCAAAATAGAGGTGGCAATTAGGTAGAGGTTCTCGCAAAATGAATATTAAATATGTAGGGCCGTATTGTGAATTATGTGGATAATGTTTTTGCTTTCTATTTTTTTTTAAAAAAAATAATTATTACTTACAATAATCCAACGGGTATCCTCGTATGTGCCCATCCTACAAGTGATAAAATGATAAGTACCAGTCTACCATCAAGTTTGTAGGATAGAAACTATTTAGTATACATTGTTTTTGTCTTAATTTCTAGTTTTGGTATCCATCTAAATCGATACTCCATTATGTTAATTATTTCATTTCTTTCTTTTGACATCTACATCACTTTTTAATGTGGTTACCACTTGCTATAATCATACTTCACTTAGCATTTTATTTGAACTTAGTGAAAGTGAAATTTTTCCTAATAATTGGTCTAAAAATTGAAGAAGATTAAAGCCAAGAAATTGAGTTCTTCCTTCTTTCTTCCAACTTTGAAAGTACCGATAGATACTATCATATAAAAAGAAGAGGTGGTCTGACTAACTCAATGAAGTGAATTTTTCAAAAACATGCTCAGAAAAATGAGAAAAATGGAGTTTTTGAAAAGAAAAATTAACAGATATTTAAAGATAAATTTTTGAAATTTGGTTCAAAATTTATGGTCAAATATTAACTTATATTTATATATATACCTCTTCTAAAATGCTAATGAGAATTAGAATTTGCAGAGAGAAGAAATGGCAAAAGAATCCTACGATCAAGCCATTGCTGCACTCGAGAAACTCCTCAGGTTTGTACTCTCTCTACGACTCTACCTTCTAAATCACACTACTTTTTTCTCGATCAAGTGGGGCCCAAAAAATATACATACACCCACACATACGTAGACAAAAAAAATGTTAAAATTTGCGAATATGCAGAGAAAACATAATATAATCATGCAATGTTTACTCGTAAAATTCAATTTCCCGGCAATGAACATGTTACTTGGTTTCGAGTTCTCCAGATCTGCATTAATTTTACCATTCTATCATCATTTTTTTACCCCATATCTGCATTAATTTATCATGGTAATGGTGCTCAAACCACAAATCTTTTTTTTTTCTACCTGAAATATTGCTTCAATAATAATAATGGTCTAAATTATTTTCTGCAATTACAGCGAGAAAGCAGAACTTGGACCAGTTGCTGCAGCAAGAGTTGACCAGATCACTGCTGAATTGAAATCAGCAGACGGCGGCAAGGCATTCGACCCTGTTGAGCACATGAAAGCTGGCTTTATTCATTTCAAGACTGAGAAATATGAGTAAGCAAATTCATTCAAATTAAAATTTCTGCATATTTGATGTTGTAACATTATTAGTGTCTGATAATTTTTCCTGTTTTCTATTTATGTACCAACAGCACAAACCCAGCCTTATATGGTGAGCTAGCAAAGGGCCAGAGCCCTAAGGTACAAATTCCTTGTTAATTTGTTGTCTAATTTTATGATTTGTACGGTTTCTGATGAGTTCTATTGTCCTAAATGTGTAAACAGTTCATGGTTTTCGCGTGCTCTGACTCACGAGTCTGCCCAT</genome_strand>
        <mrna_strand>TCAACTGCTTCCATTAACAATTGCCTTACTCTCTCCCCTGCTCAAGCTTCCCTTAAGAAACCTACTCGTCCCGTTGCCTTCGCAAGGCTTGGCAACTCTTCTTCTTCTTCTTCTATTCCAAGTCTCATCAGAAACGAGCCCGTCTTTGCTGCCCCTACTCCCATCATCAACCCCATTGTG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGAGAAGAAATGGCAAAAGAATCCTACGATCAAGCCATTGCTGCACTCGAGAAACTCCTCAG....................................................................................................................................................................................................................................................................................................................................................................................CGAGAAAGCAGAACTTGGACCAGTTGCTGCAGCAAGAGTTGACCAGATCACTGCTGAATTGAAATCAGCAGACGGCGGCAAGGCATTCGACCCTGTTGAGCACATGAAAGCTGGCTTTATTCATTTCAAGACTGAGAAATATGA..................................................................................................CACAAACCCAGCCTTATATGGTGAGCTAGCAAAGGGCCAGAGCCCTAAG....................................................................................TTCATGGTTTTCGCGTGCTCTGACTCACGAGTCTGCCCAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0236E02-u8qcS/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E293347" ref_strand="+" ref_description="SGN-E293347 [cLET-18-K15]">
      <seq>tcaactgcttccattaacaattgccttactctctcccctgctcaagcttcccttaagaaacctactcgtcccgttgccttcgcaaggcttggcaactcttcttcttcttcttctattccaagtctcatcagaaacgagcccgtctttgctgcccctactcccatcatcaaccccattgtgagagaagaaatggcaaaagaatcctacgatcaagccattgctgcactcgagaaactcctcagcgagaaagcagaacttggaccagttgctgcagcaagagttgaccagatcactgctgaattgaaatcagcagacggcggcaaggcattcgaccctgttgagcacatgaaagctggctttattcatttcaagactgagaaatatgacacaaacccagccttatatggtgagctagcaaagggccagagccctaagttcatggttttcgcgtgctctgact</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0236E02-u8qcS/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0236E02.1" temp_strand="+" temp_description="C02HBa0236E02.1  AC215430.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0236E02 sequenced_by:kribb upload_account_name:korea">
        <position start="14703" stop="17513"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="15003" g_stop="15182" g_length="180"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="180" r_length="180" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="15183" i_stop="16379" i_length="1197">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.971" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="16380" g_stop="16441" g_length="62"/>
          <reference_exon_boundary r_type="cDNA" r_start="181" r_stop="242" r_length="62" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="16442" i_stop="16813" i_length="372">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="16814" g_stop="16957" g_length="144"/>
          <reference_exon_boundary r_type="cDNA" r_start="243" r_stop="386" r_length="144" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="16958" i_stop="17055" i_length="98">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="17056" g_stop="17104" g_length="49"/>
          <reference_exon_boundary r_type="cDNA" r_start="387" r_stop="435" r_length="49" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="17105" i_stop="17188" i_length="84">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.961" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="17189" g_stop="17213" g_length="25"/>
          <reference_exon_boundary r_type="cDNA" r_start="436" r_stop="460" r_length="25" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0236E02.1" gen_strand="+" ref_id="SGN-E293347" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>460</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0236E02.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E293347" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="15003" e_stop="15182"/>
          <exon e_start="16380" e_stop="16441"/>
          <exon e_start="16814" e_stop="16957"/>
          <exon e_start="17056" e_stop="17104"/>
          <exon e_start="17189" e_stop="17213"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCAACTGCTTCCATTAACAATTGCCTTACTCTCTCCCCTGCTCAAGCTTCCCTTAAGAAACCTACTCGTCCCGTTGCCTTCGCAAGGCTTGGCAACTCTTCTTCTTCTTCTTCTATTCCAAGTCTCATCAGAAACGAGCCCGTCTTTGCTGCCCCTACTCCCATCATCAACCCCATTGTGGTACGAATTTTTAACTTACATCACTGTATTTTAATCTGTTATAACAAGTTATTTATATTTGACGTTACTTAATTTATTTTTTAAGCAAGACATTTTTTTTGTCTTATCGTATTTTTTGTAACGACTTGTGTCCATGCATGCTAGTTCACGTGAAAATTCAATATTGGCATAGTTCTAAACTTTAGTTTCTAACCACCTTTATTATTGGTATTGTTATTTTTGGCCATGAATCTCCTGAAGTTAGGTGAATTGATCATGTCGCTCTAAATTGTACACGTCTATTGCGTGTACTCAATGACATATAATATATTATTGCAATCCTAAAATAAGTGTTATTTTAATTTATTTTGAACTCATTAAAATAAATATGATATTTTACTGAGTTACTTATATTTATTACTTTGATTTTTTTGAGTACTAATTTGTATTTTGAAACTTTTAAGATGACGAGAGGGTGGAAATAACAAATTAAATTTGAAAATGAACCAAAATAGAGGTGGCAATTAGGTAGAGGTTCTCGCAAAATGAATATTAAATATGTAGGGCCGTATTGTGAATTATGTGGATAATGTTTTTGCTTTCTATTTTTTTTTAAAAAAAATAATTATTACTTACAATAATCCAACGGGTATCCTCGTATGTGCCCATCCTACAAGTGATAAAATGATAAGTACCAGTCTACCATCAAGTTTGTAGGATAGAAACTATTTAGTATACATTGTTTTTGTCTTAATTTCTAGTTTTGGTATCCATCTAAATCGATACTCCATTATGTTAATTATTTCATTTCTTTCTTTTGACATCTACATCACTTTTTAATGTGGTTACCACTTGCTATAATCATACTTCACTTAGCATTTTATTTGAACTTAGTGAAAGTGAAATTTTTCCTAATAATTGGTCTAAAAATTGAAGAAGATTAAAGCCAAGAAATTGAGTTCTTCCTTCTTTCTTCCAACTTTGAAAGTACCGATAGATACTATCATATAAAAAGAAGAGGTGGTCTGACTAACTCAATGAAGTGAATTTTTCAAAAACATGCTCAGAAAAATGAGAAAAATGGAGTTTTTGAAAAGAAAAATTAACAGATATTTAAAGATAAATTTTTGAAATTTGGTTCAAAATTTATGGTCAAATATTAACTTATATTTATATATATACCTCTTCTAAAATGCTAATGAGAATTAGAATTTGCAGAGAGAAGAAATGGCAAAAGAATCCTACGATCAAGCCATTGCTGCACTCGAGAAACTCCTCAGGTTTGTACTCTCTCTACGACTCTACCTTCTAAATCACACTACTTTTTTCTCGATCAAGTGGGGCCCAAAAAATATACATACACCCACACATACGTAGACAAAAAAAATGTTAAAATTTGCGAATATGCAGAGAAAACATAATATAATCATGCAATGTTTACTCGTAAAATTCAATTTCCCGGCAATGAACATGTTACTTGGTTTCGAGTTCTCCAGATCTGCATTAATTTTACCATTCTATCATCATTTTTTTACCCCATATCTGCATTAATTTATCATGGTAATGGTGCTCAAACCACAAATCTTTTTTTTTTCTACCTGAAATATTGCTTCAATAATAATAATGGTCTAAATTATTTTCTGCAATTACAGCGAGAAAGCAGAACTTGGACCAGTTGCTGCAGCAAGAGTTGACCAGATCACTGCTGAATTGAAATCAGCAGACGGCGGCAAGGCATTCGACCCTGTTGAGCACATGAAAGCTGGCTTTATTCATTTCAAGACTGAGAAATATGAGTAAGCAAATTCATTCAAATTAAAATTTCTGCATATTTGATGTTGTAACATTATTAGTGTCTGATAATTTTTCCTGTTTTCTATTTATGTACCAACAGCACAAACCCAGCCTTATATGGTGAGCTAGCAAAGGGCCAGAGCCCTAAGGTACAAATTCCTTGTTAATTTGTTGTCTAATTTTATGATTTGTACGGTTTCTGATGAGTTCTATTGTCCTAAATGTGTAAACAGTTCATGGTTTTCGCGTGCTCTGACT</genome_strand>
        <mrna_strand>TCAACTGCTTCCATTAACAATTGCCTTACTCTCTCCCCTGCTCAAGCTTCCCTTAAGAAACCTACTCGTCCCGTTGCCTTCGCAAGGCTTGGCAACTCTTCTTCTTCTTCTTCTATTCCAAGTCTCATCAGAAACGAGCCCGTCTTTGCTGCCCCTACTCCCATCATCAACCCCATTGTG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGAGAAGAAATGGCAAAAGAATCCTACGATCAAGCCATTGCTGCACTCGAGAAACTCCTCAG....................................................................................................................................................................................................................................................................................................................................................................................CGAGAAAGCAGAACTTGGACCAGTTGCTGCAGCAAGAGTTGACCAGATCACTGCTGAATTGAAATCAGCAGACGGCGGCAAGGCATTCGACCCTGTTGAGCACATGAAAGCTGGCTTTATTCATTTCAAGACTGAGAAATATGA..................................................................................................CACAAACCCAGCCTTATATGGTGAGCTAGCAAAGGGCCAGAGCCCTAAG....................................................................................TTCATGGTTTTCGCGTGCTCTGACT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0236E02-u8qcS/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E290827" ref_strand="+" ref_description="SGN-E290827 [cLET-10-G20]">
      <seq>tcaactgcttccattaacaattgccttactctctcccctgctcaagcttcccttaagaaacctactcgtcccgttgccttcgcaaggcttggcaactcttcttcttcttcttctattccaagtctcatcagaaacgagcccgtctttgctgcccctactcccatcatcaaccccattgtgagagaagaaatggcaaaagaatcctacgatcaagccattgctgcactcgagaaactcctcagcgagaaagcagaacttggaccagttgctgcagcaagagttgaccagatcactgctgaattgaaatcagcagacggcggcaaggcattcgaccctgttgagcacatgaaagctggctttattcatttcaagactgagaaatatgacacaaacccagccttatatggtgagctagc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0236E02-u8qcS/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0236E02.1" temp_strand="+" temp_description="C02HBa0236E02.1  AC215430.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0236E02 sequenced_by:kribb upload_account_name:korea">
        <position start="14703" stop="17385"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="15003" g_stop="15182" g_length="180"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="180" r_length="180" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="15183" i_stop="16379" i_length="1197">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.971" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="16380" g_stop="16441" g_length="62"/>
          <reference_exon_boundary r_type="cDNA" r_start="181" r_stop="242" r_length="62" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="16442" i_stop="16813" i_length="372">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="16814" g_stop="16957" g_length="144"/>
          <reference_exon_boundary r_type="cDNA" r_start="243" r_stop="386" r_length="144" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="16958" i_stop="17055" i_length="98">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="17056" g_stop="17085" g_length="30"/>
          <reference_exon_boundary r_type="cDNA" r_start="387" r_stop="416" r_length="30" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0236E02.1" gen_strand="+" ref_id="SGN-E290827" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>416</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0236E02.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E290827" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="15003" e_stop="15182"/>
          <exon e_start="16380" e_stop="16441"/>
          <exon e_start="16814" e_stop="16957"/>
          <exon e_start="17056" e_stop="17085"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCAACTGCTTCCATTAACAATTGCCTTACTCTCTCCCCTGCTCAAGCTTCCCTTAAGAAACCTACTCGTCCCGTTGCCTTCGCAAGGCTTGGCAACTCTTCTTCTTCTTCTTCTATTCCAAGTCTCATCAGAAACGAGCCCGTCTTTGCTGCCCCTACTCCCATCATCAACCCCATTGTGGTACGAATTTTTAACTTACATCACTGTATTTTAATCTGTTATAACAAGTTATTTATATTTGACGTTACTTAATTTATTTTTTAAGCAAGACATTTTTTTTGTCTTATCGTATTTTTTGTAACGACTTGTGTCCATGCATGCTAGTTCACGTGAAAATTCAATATTGGCATAGTTCTAAACTTTAGTTTCTAACCACCTTTATTATTGGTATTGTTATTTTTGGCCATGAATCTCCTGAAGTTAGGTGAATTGATCATGTCGCTCTAAATTGTACACGTCTATTGCGTGTACTCAATGACATATAATATATTATTGCAATCCTAAAATAAGTGTTATTTTAATTTATTTTGAACTCATTAAAATAAATATGATATTTTACTGAGTTACTTATATTTATTACTTTGATTTTTTTGAGTACTAATTTGTATTTTGAAACTTTTAAGATGACGAGAGGGTGGAAATAACAAATTAAATTTGAAAATGAACCAAAATAGAGGTGGCAATTAGGTAGAGGTTCTCGCAAAATGAATATTAAATATGTAGGGCCGTATTGTGAATTATGTGGATAATGTTTTTGCTTTCTATTTTTTTTTAAAAAAAATAATTATTACTTACAATAATCCAACGGGTATCCTCGTATGTGCCCATCCTACAAGTGATAAAATGATAAGTACCAGTCTACCATCAAGTTTGTAGGATAGAAACTATTTAGTATACATTGTTTTTGTCTTAATTTCTAGTTTTGGTATCCATCTAAATCGATACTCCATTATGTTAATTATTTCATTTCTTTCTTTTGACATCTACATCACTTTTTAATGTGGTTACCACTTGCTATAATCATACTTCACTTAGCATTTTATTTGAACTTAGTGAAAGTGAAATTTTTCCTAATAATTGGTCTAAAAATTGAAGAAGATTAAAGCCAAGAAATTGAGTTCTTCCTTCTTTCTTCCAACTTTGAAAGTACCGATAGATACTATCATATAAAAAGAAGAGGTGGTCTGACTAACTCAATGAAGTGAATTTTTCAAAAACATGCTCAGAAAAATGAGAAAAATGGAGTTTTTGAAAAGAAAAATTAACAGATATTTAAAGATAAATTTTTGAAATTTGGTTCAAAATTTATGGTCAAATATTAACTTATATTTATATATATACCTCTTCTAAAATGCTAATGAGAATTAGAATTTGCAGAGAGAAGAAATGGCAAAAGAATCCTACGATCAAGCCATTGCTGCACTCGAGAAACTCCTCAGGTTTGTACTCTCTCTACGACTCTACCTTCTAAATCACACTACTTTTTTCTCGATCAAGTGGGGCCCAAAAAATATACATACACCCACACATACGTAGACAAAAAAAATGTTAAAATTTGCGAATATGCAGAGAAAACATAATATAATCATGCAATGTTTACTCGTAAAATTCAATTTCCCGGCAATGAACATGTTACTTGGTTTCGAGTTCTCCAGATCTGCATTAATTTTACCATTCTATCATCATTTTTTTACCCCATATCTGCATTAATTTATCATGGTAATGGTGCTCAAACCACAAATCTTTTTTTTTTCTACCTGAAATATTGCTTCAATAATAATAATGGTCTAAATTATTTTCTGCAATTACAGCGAGAAAGCAGAACTTGGACCAGTTGCTGCAGCAAGAGTTGACCAGATCACTGCTGAATTGAAATCAGCAGACGGCGGCAAGGCATTCGACCCTGTTGAGCACATGAAAGCTGGCTTTATTCATTTCAAGACTGAGAAATATGAGTAAGCAAATTCATTCAAATTAAAATTTCTGCATATTTGATGTTGTAACATTATTAGTGTCTGATAATTTTTCCTGTTTTCTATTTATGTACCAACAGCACAAACCCAGCCTTATATGGTGAGCTAGC</genome_strand>
        <mrna_strand>TCAACTGCTTCCATTAACAATTGCCTTACTCTCTCCCCTGCTCAAGCTTCCCTTAAGAAACCTACTCGTCCCGTTGCCTTCGCAAGGCTTGGCAACTCTTCTTCTTCTTCTTCTATTCCAAGTCTCATCAGAAACGAGCCCGTCTTTGCTGCCCCTACTCCCATCATCAACCCCATTGTG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGAGAAGAAATGGCAAAAGAATCCTACGATCAAGCCATTGCTGCACTCGAGAAACTCCTCAG....................................................................................................................................................................................................................................................................................................................................................................................CGAGAAAGCAGAACTTGGACCAGTTGCTGCAGCAAGAGTTGACCAGATCACTGCTGAATTGAAATCAGCAGACGGCGGCAAGGCATTCGACCCTGTTGAGCACATGAAAGCTGGCTTTATTCATTTCAAGACTGAGAAATATGA..................................................................................................CACAAACCCAGCCTTATATGGTGAGCTAGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0236E02-u8qcS/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E354693" ref_strand="+" ref_description="SGN-E354693 [cLHT-5-N18]">
      <seq>tcaactgcttccattaacaattgcctcactctctcccctgctcaagcttcccttaagaaacctactcgtcccgttgccttcgcaaggcttggcaactcttcttcttcttcttcttctattccaagtctcatcagaaacgagcccgtctttgctgcccctactcccatcatcaaccccattgtgagagaagaaatggcaaaagaatcctacgatcaggccattgctgcactcgagaaactcctcagcgagaaagcagaacttggaccagttgctgcagcaagagttgatcagatcactgctgaattgaaatcagcagatggcggcaaggcattcgaccctgttgagcacatgaaagctggctttattcatttcaagactgagaaatatgatacaaaccca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0236E02-u8qcS/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0236E02.1" temp_strand="+" temp_description="C02HBa0236E02.1  AC215430.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0236E02 sequenced_by:kribb upload_account_name:korea">
        <position start="14703" stop="17260"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="15003" g_stop="15182" g_length="180"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="183" r_length="183" r_score="0.961"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="15183" i_stop="16379" i_length="1197">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.971" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="16380" g_stop="16441" g_length="62"/>
          <reference_exon_boundary r_type="cDNA" r_start="184" r_stop="245" r_length="62" r_score="0.984"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="16442" i_stop="16813" i_length="372">
            <donor d_prob="0.999" d_score="0.98"/>
            <acceptor a_prob="1.000" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="16814" g_stop="16957" g_length="144"/>
          <reference_exon_boundary r_type="cDNA" r_start="246" r_stop="389" r_length="144" r_score="0.986"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="16958" i_stop="17055" i_length="98">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="17056" g_stop="17065" g_length="10"/>
          <reference_exon_boundary r_type="cDNA" r_start="390" r_stop="399" r_length="10" r_score="0.900"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0236E02.1" gen_strand="+" ref_id="SGN-E354693" ref_strand="+">
        <total_alignment_score>0.974</total_alignment_score>
        <cumulative_length_of_scored_exons>396</cumulative_length_of_scored_exons>
        <coverage percentage="0.992" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0236E02.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E354693" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="15003" e_stop="15182"/>
          <exon e_start="16380" e_stop="16441"/>
          <exon e_start="16814" e_stop="16957"/>
          <exon e_start="17056" e_stop="17065"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCAACTGCTTCCATTAACAATTGCCTTACTCTCTCCCCTGCTCAAGCTTCCCTTAAGAAACCTACTCGTCCCGTTGCCTTCGCAAGGCTTGGCAA--C-TCTTCTTCTTCTTCTTCTATTCCAAGTCTCATCAGAAACGAGCCCGTCTTTGCTGCCCCTACTCCCATCATCAACCCCATTGTGGTACGAATTTTTAACTTACATCACTGTATTTTAATCTGTTATAACAAGTTATTTATATTTGACGTTACTTAATTTATTTTTTAAGCAAGACATTTTTTTTGTCTTATCGTATTTTTTGTAACGACTTGTGTCCATGCATGCTAGTTCACGTGAAAATTCAATATTGGCATAGTTCTAAACTTTAGTTTCTAACCACCTTTATTATTGGTATTGTTATTTTTGGCCATGAATCTCCTGAAGTTAGGTGAATTGATCATGTCGCTCTAAATTGTACACGTCTATTGCGTGTACTCAATGACATATAATATATTATTGCAATCCTAAAATAAGTGTTATTTTAATTTATTTTGAACTCATTAAAATAAATATGATATTTTACTGAGTTACTTATATTTATTACTTTGATTTTTTTGAGTACTAATTTGTATTTTGAAACTTTTAAGATGACGAGAGGGTGGAAATAACAAATTAAATTTGAAAATGAACCAAAATAGAGGTGGCAATTAGGTAGAGGTTCTCGCAAAATGAATATTAAATATGTAGGGCCGTATTGTGAATTATGTGGATAATGTTTTTGCTTTCTATTTTTTTTTAAAAAAAATAATTATTACTTACAATAATCCAACGGGTATCCTCGTATGTGCCCATCCTACAAGTGATAAAATGATAAGTACCAGTCTACCATCAAGTTTGTAGGATAGAAACTATTTAGTATACATTGTTTTTGTCTTAATTTCTAGTTTTGGTATCCATCTAAATCGATACTCCATTATGTTAATTATTTCATTTCTTTCTTTTGACATCTACATCACTTTTTAATGTGGTTACCACTTGCTATAATCATACTTCACTTAGCATTTTATTTGAACTTAGTGAAAGTGAAATTTTTCCTAATAATTGGTCTAAAAATTGAAGAAGATTAAAGCCAAGAAATTGAGTTCTTCCTTCTTTCTTCCAACTTTGAAAGTACCGATAGATACTATCATATAAAAAGAAGAGGTGGTCTGACTAACTCAATGAAGTGAATTTTTCAAAAACATGCTCAGAAAAATGAGAAAAATGGAGTTTTTGAAAAGAAAAATTAACAGATATTTAAAGATAAATTTTTGAAATTTGGTTCAAAATTTATGGTCAAATATTAACTTATATTTATATATATACCTCTTCTAAAATGCTAATGAGAATTAGAATTTGCAGAGAGAAGAAATGGCAAAAGAATCCTACGATCAAGCCATTGCTGCACTCGAGAAACTCCTCAGGTTTGTACTCTCTCTACGACTCTACCTTCTAAATCACACTACTTTTTTCTCGATCAAGTGGGGCCCAAAAAATATACATACACCCACACATACGTAGACAAAAAAAATGTTAAAATTTGCGAATATGCAGAGAAAACATAATATAATCATGCAATGTTTACTCGTAAAATTCAATTTCCCGGCAATGAACATGTTACTTGGTTTCGAGTTCTCCAGATCTGCATTAATTTTACCATTCTATCATCATTTTTTTACCCCATATCTGCATTAATTTATCATGGTAATGGTGCTCAAACCACAAATCTTTTTTTTTTCTACCTGAAATATTGCTTCAATAATAATAATGGTCTAAATTATTTTCTGCAATTACAGCGAGAAAGCAGAACTTGGACCAGTTGCTGCAGCAAGAGTTGACCAGATCACTGCTGAATTGAAATCAGCAGACGGCGGCAAGGCATTCGACCCTGTTGAGCACATGAAAGCTGGCTTTATTCATTTCAAGACTGAGAAATATGAGTAAGCAAATTCATTCAAATTAAAATTTCTGCATATTTGATGTTGTAACATTATTAGTGTCTGATAATTTTTCCTGTTTTCTATTTATGTACCAACAGCACAAACCCA</genome_strand>
        <mrna_strand>TCAACTGCTTCCATTAACAATTGCCTCACTCTCTCCCCTGCTCAAGCTTCCCTTAAGAAACCTACTCGTCCCGTTGCCTTCGCAAGGCTTGGCAACTCTTCTTCTTCTTCTTCTTCTATTCCAAGTCTCATCAGAAACGAGCCCGTCTTTGCTGCCCCTACTCCCATCATCAACCCCATTGTG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGAGAAGAAATGGCAAAAGAATCCTACGATCAGGCCATTGCTGCACTCGAGAAACTCCTCAG....................................................................................................................................................................................................................................................................................................................................................................................CGAGAAAGCAGAACTTGGACCAGTTGCTGCAGCAAGAGTTGATCAGATCACTGCTGAATTGAAATCAGCAGATGGCGGCAAGGCATTCGACCCTGTTGAGCACATGAAAGCTGGCTTTATTCATTTCAAGACTGAGAAATATGA..................................................................................................TACAAACCCA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0236E02-u8qcS/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E358322" ref_strand="+" ref_description="SGN-E358322 [cLHT-28-G20]">
      <seq>tcaactttttccattttcaattgcctcactctctccccgactcaagcttcccttaagaaacctactcgtcccgttgccttcgcaaggcttggcaactcttcttcttcttcttcttctattccaagtctcatcaaaaacgagcccggctttgctggccctactcccatcatcaaccccattgtgagagaagaaatggcaaaag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0236E02-u8qcS/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0236E02.1" temp_strand="+" temp_description="C02HBa0236E02.1  AC215430.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0236E02 sequenced_by:kribb upload_account_name:korea">
        <position start="14703" stop="16698"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="15003" g_stop="15182" g_length="180"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="183" r_length="183" r_score="0.911"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="15183" i_stop="16379" i_length="1197">
            <donor d_prob="1.000" d_score="0.94"/>
            <acceptor a_prob="0.971" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="16380" g_stop="16398" g_length="19"/>
          <reference_exon_boundary r_type="cDNA" r_start="184" r_stop="202" r_length="19" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0236E02.1" gen_strand="+" ref_id="SGN-E358322" ref_strand="+">
        <total_alignment_score>0.911</total_alignment_score>
        <cumulative_length_of_scored_exons>199</cumulative_length_of_scored_exons>
        <coverage percentage="0.985" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0236E02.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E358322" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="15003" e_stop="15182"/>
          <exon e_start="16380" e_stop="16398"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCAACTGCTTCCATTAACAATTGCCTTACTCTCTCCCCTGCTCAAGCTTCCCTTAAGAAACCTACTCGTCCCGTTGCCTTCGCAAGGCTTGGCAA--C-TCTTCTTCTTCTTCTTCTATTCCAAGTCTCATCAGAAACGAGCCCGTCTTTGCTGCCCCTACTCCCATCATCAACCCCATTGTGGTACGAATTTTTAACTTACATCACTGTATTTTAATCTGTTATAACAAGTTATTTATATTTGACGTTACTTAATTTATTTTTTAAGCAAGACATTTTTTTTGTCTTATCGTATTTTTTGTAACGACTTGTGTCCATGCATGCTAGTTCACGTGAAAATTCAATATTGGCATAGTTCTAAACTTTAGTTTCTAACCACCTTTATTATTGGTATTGTTATTTTTGGCCATGAATCTCCTGAAGTTAGGTGAATTGATCATGTCGCTCTAAATTGTACACGTCTATTGCGTGTACTCAATGACATATAATATATTATTGCAATCCTAAAATAAGTGTTATTTTAATTTATTTTGAACTCATTAAAATAAATATGATATTTTACTGAGTTACTTATATTTATTACTTTGATTTTTTTGAGTACTAATTTGTATTTTGAAACTTTTAAGATGACGAGAGGGTGGAAATAACAAATTAAATTTGAAAATGAACCAAAATAGAGGTGGCAATTAGGTAGAGGTTCTCGCAAAATGAATATTAAATATGTAGGGCCGTATTGTGAATTATGTGGATAATGTTTTTGCTTTCTATTTTTTTTTAAAAAAAATAATTATTACTTACAATAATCCAACGGGTATCCTCGTATGTGCCCATCCTACAAGTGATAAAATGATAAGTACCAGTCTACCATCAAGTTTGTAGGATAGAAACTATTTAGTATACATTGTTTTTGTCTTAATTTCTAGTTTTGGTATCCATCTAAATCGATACTCCATTATGTTAATTATTTCATTTCTTTCTTTTGACATCTACATCACTTTTTAATGTGGTTACCACTTGCTATAATCATACTTCACTTAGCATTTTATTTGAACTTAGTGAAAGTGAAATTTTTCCTAATAATTGGTCTAAAAATTGAAGAAGATTAAAGCCAAGAAATTGAGTTCTTCCTTCTTTCTTCCAACTTTGAAAGTACCGATAGATACTATCATATAAAAAGAAGAGGTGGTCTGACTAACTCAATGAAGTGAATTTTTCAAAAACATGCTCAGAAAAATGAGAAAAATGGAGTTTTTGAAAAGAAAAATTAACAGATATTTAAAGATAAATTTTTGAAATTTGGTTCAAAATTTATGGTCAAATATTAACTTATATTTATATATATACCTCTTCTAAAATGCTAATGAGAATTAGAATTTGCAGAGAGAAGAAATGGCAAAAG</genome_strand>
        <mrna_strand>TCAACTTTTTCCATTTTCAATTGCCTCACTCTCTCCCCGACTCAAGCTTCCCTTAAGAAACCTACTCGTCCCGTTGCCTTCGCAAGGCTTGGCAACTCTTCTTCTTCTTCTTCTTCTATTCCAAGTCTCATCAAAAACGAGCCCGGCTTTGCTGGCCCTACTCCCATCATCAACCCCATTGTG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGAGAAGAAATGGCAAAAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0236E02-u8qcS/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E730283" ref_strand="+" ref_description="SGN-E730283 [LA23CF03]">
      <seq>catctgcttccattaacaattgccttactctctcccctgctcaagcttcccttaagaaacctactcgtcccgttgccttcgcaaggcttggcaactcttcttcttcttcttctattccaagtctcatcagaaacgagcccgtctttgctgcccctactcccatcatcaaccccattgtgagagaagaaatggcaaaagaatcctacgatcaagccattgctgcactcgagaaactcctcagcgagaaagcagaacttggaccagttgctgcagcaagagttgaccagatcactgctgaattgaaatcagcagacggcggcaaggcattcgaccctgttgagcacatgaaagctggctttattcatttcaagactgagaaatatgacacaaacccagccttatatggtgagctagcaaagggccagagccctaagttcatggttttcgcgtgctctgactcacgagtctgcccatcccatgtcctcaacttccaacctggtgaggcattcatggttcgtaacatcgccaacatggtccctgcttatgacaaggtcaggtactctggagtaggagcagccattgaatacgccgttcttcatcttaaggtggagaacatcgttgtcattggccacagtgcttgtggaggtatcaaaggtctcatgtcactacctgaagatggtagtgaatcaactgcctttattgaggattgggtaaaaatttgtttacctgccaaggcaaaggttctggccgatcacggagggaaagaatttgcacatcaatgcacagcttgtgagaaggaagctgtgaacgtttcacttggaaatctgcttacgtatccattcgtgagagaaggattg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0236E02-u8qcS/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0236E02.1" temp_strand="+" temp_description="C02HBa0236E02.1  AC215430.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0236E02 sequenced_by:kribb upload_account_name:korea">
        <position start="14704" stop="18153"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="15004" g_stop="15182" g_length="179"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="179" r_length="179" r_score="0.994"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="15183" i_stop="16379" i_length="1197">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.971" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="16380" g_stop="16441" g_length="62"/>
          <reference_exon_boundary r_type="cDNA" r_start="180" r_stop="241" r_length="62" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="16442" i_stop="16813" i_length="372">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="16814" g_stop="16957" g_length="144"/>
          <reference_exon_boundary r_type="cDNA" r_start="242" r_stop="385" r_length="144" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="16958" i_stop="17055" i_length="98">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="17056" g_stop="17104" g_length="49"/>
          <reference_exon_boundary r_type="cDNA" r_start="386" r_stop="434" r_length="49" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="17105" i_stop="17188" i_length="84">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.961" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="17189" g_stop="17305" g_length="117"/>
          <reference_exon_boundary r_type="cDNA" r_start="435" r_stop="551" r_length="117" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="17306" i_stop="17390" i_length="85">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.979" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="17391" g_stop="17530" g_length="140"/>
          <reference_exon_boundary r_type="cDNA" r_start="552" r_stop="691" r_length="140" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="17531" i_stop="17607" i_length="77">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.948" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="17608" g_stop="17713" g_length="106"/>
          <reference_exon_boundary r_type="cDNA" r_start="692" r_stop="797" r_length="106" r_score="1.000"/>
        </exon>
        <intron i_serial="7">
          <gDNA_intron_boundary i_start="17714" i_stop="17793" i_length="80">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="8">
          <gDNA_exon_boundary g_start="17794" g_stop="17853" g_length="60"/>
          <reference_exon_boundary r_type="cDNA" r_start="798" r_stop="857" r_length="60" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0236E02.1" gen_strand="+" ref_id="SGN-E730283" ref_strand="+">
        <total_alignment_score>0.999</total_alignment_score>
        <cumulative_length_of_scored_exons>857</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0236E02.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E730283" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="15004" e_stop="15182"/>
          <exon e_start="16380" e_stop="16441"/>
          <exon e_start="16814" e_stop="16957"/>
          <exon e_start="17056" e_stop="17104"/>
          <exon e_start="17189" e_stop="17305"/>
          <exon e_start="17391" e_stop="17530"/>
          <exon e_start="17608" e_stop="17713"/>
          <exon e_start="17794" e_stop="17853"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAACTGCTTCCATTAACAATTGCCTTACTCTCTCCCCTGCTCAAGCTTCCCTTAAGAAACCTACTCGTCCCGTTGCCTTCGCAAGGCTTGGCAACTCTTCTTCTTCTTCTTCTATTCCAAGTCTCATCAGAAACGAGCCCGTCTTTGCTGCCCCTACTCCCATCATCAACCCCATTGTGGTACGAATTTTTAACTTACATCACTGTATTTTAATCTGTTATAACAAGTTATTTATATTTGACGTTACTTAATTTATTTTTTAAGCAAGACATTTTTTTTGTCTTATCGTATTTTTTGTAACGACTTGTGTCCATGCATGCTAGTTCACGTGAAAATTCAATATTGGCATAGTTCTAAACTTTAGTTTCTAACCACCTTTATTATTGGTATTGTTATTTTTGGCCATGAATCTCCTGAAGTTAGGTGAATTGATCATGTCGCTCTAAATTGTACACGTCTATTGCGTGTACTCAATGACATATAATATATTATTGCAATCCTAAAATAAGTGTTATTTTAATTTATTTTGAACTCATTAAAATAAATATGATATTTTACTGAGTTACTTATATTTATTACTTTGATTTTTTTGAGTACTAATTTGTATTTTGAAACTTTTAAGATGACGAGAGGGTGGAAATAACAAATTAAATTTGAAAATGAACCAAAATAGAGGTGGCAATTAGGTAGAGGTTCTCGCAAAATGAATATTAAATATGTAGGGCCGTATTGTGAATTATGTGGATAATGTTTTTGCTTTCTATTTTTTTTTAAAAAAAATAATTATTACTTACAATAATCCAACGGGTATCCTCGTATGTGCCCATCCTACAAGTGATAAAATGATAAGTACCAGTCTACCATCAAGTTTGTAGGATAGAAACTATTTAGTATACATTGTTTTTGTCTTAATTTCTAGTTTTGGTATCCATCTAAATCGATACTCCATTATGTTAATTATTTCATTTCTTTCTTTTGACATCTACATCACTTTTTAATGTGGTTACCACTTGCTATAATCATACTTCACTTAGCATTTTATTTGAACTTAGTGAAAGTGAAATTTTTCCTAATAATTGGTCTAAAAATTGAAGAAGATTAAAGCCAAGAAATTGAGTTCTTCCTTCTTTCTTCCAACTTTGAAAGTACCGATAGATACTATCATATAAAAAGAAGAGGTGGTCTGACTAACTCAATGAAGTGAATTTTTCAAAAACATGCTCAGAAAAATGAGAAAAATGGAGTTTTTGAAAAGAAAAATTAACAGATATTTAAAGATAAATTTTTGAAATTTGGTTCAAAATTTATGGTCAAATATTAACTTATATTTATATATATACCTCTTCTAAAATGCTAATGAGAATTAGAATTTGCAGAGAGAAGAAATGGCAAAAGAATCCTACGATCAAGCCATTGCTGCACTCGAGAAACTCCTCAGGTTTGTACTCTCTCTACGACTCTACCTTCTAAATCACACTACTTTTTTCTCGATCAAGTGGGGCCCAAAAAATATACATACACCCACACATACGTAGACAAAAAAAATGTTAAAATTTGCGAATATGCAGAGAAAACATAATATAATCATGCAATGTTTACTCGTAAAATTCAATTTCCCGGCAATGAACATGTTACTTGGTTTCGAGTTCTCCAGATCTGCATTAATTTTACCATTCTATCATCATTTTTTTACCCCATATCTGCATTAATTTATCATGGTAATGGTGCTCAAACCACAAATCTTTTTTTTTTCTACCTGAAATATTGCTTCAATAATAATAATGGTCTAAATTATTTTCTGCAATTACAGCGAGAAAGCAGAACTTGGACCAGTTGCTGCAGCAAGAGTTGACCAGATCACTGCTGAATTGAAATCAGCAGACGGCGGCAAGGCATTCGACCCTGTTGAGCACATGAAAGCTGGCTTTATTCATTTCAAGACTGAGAAATATGAGTAAGCAAATTCATTCAAATTAAAATTTCTGCATATTTGATGTTGTAACATTATTAGTGTCTGATAATTTTTCCTGTTTTCTATTTATGTACCAACAGCACAAACCCAGCCTTATATGGTGAGCTAGCAAAGGGCCAGAGCCCTAAGGTACAAATTCCTTGTTAATTTGTTGTCTAATTTTATGATTTGTACGGTTTCTGATGAGTTCTATTGTCCTAAATGTGTAAACAGTTCATGGTTTTCGCGTGCTCTGACTCACGAGTCTGCCCATCCCATGTCCTCAACTTCCAACCTGGTGAGGCATTCATGGTTCGTAACATCGCCAACATGGTCCCTGCTTATGACAAGGTCAGTTACAAATCGATCAACTAGTCGATTATTTCGCTCTGGAATTGTGTTTTTTAAAAATAAAGATGGAATTGAATTTTTACAGGTCAGGTACTCTGGAGTAGGAGCAGCCATTGAATACGCCGTTCTTCATCTTAAGGTGGAGAACATCGTTGTCATTGGCCACAGTGCTTGTGGAGGTATCAAAGGTCTCATGTCACTACCTGAAGATGGTAGTGAATCAACGTACGTCACTCTATAAATCTATTCATTCAAAACACTTATCCTTAACAGATGATTGATTAATAATCTAATATACGCAGTGCCTTTATTGAGGATTGGGTAAAAATTTGTTTACCTGCCAAGGCAAAGGTTCTGGCCGATCACGGAGGGAAAGAATTTGCACATCAATGCACAGCTTGTGAGAAGGTAAAATTCAAATTTAACTTTTTGATTATCAATTAATTACATATATAGCAGTATTTTATAATTGATGAAAAATGTTGCAGGAAGCTGTGAACGTTTCACTTGGAAATCTGCTTACGTATCCATTCGTGAGAGAAGGATTG</genome_strand>
        <mrna_strand>CATCTGCTTCCATTAACAATTGCCTTACTCTCTCCCCTGCTCAAGCTTCCCTTAAGAAACCTACTCGTCCCGTTGCCTTCGCAAGGCTTGGCAACTCTTCTTCTTCTTCTTCTATTCCAAGTCTCATCAGAAACGAGCCCGTCTTTGCTGCCCCTACTCCCATCATCAACCCCATTGTG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGAGAAGAAATGGCAAAAGAATCCTACGATCAAGCCATTGCTGCACTCGAGAAACTCCTCAG....................................................................................................................................................................................................................................................................................................................................................................................CGAGAAAGCAGAACTTGGACCAGTTGCTGCAGCAAGAGTTGACCAGATCACTGCTGAATTGAAATCAGCAGACGGCGGCAAGGCATTCGACCCTGTTGAGCACATGAAAGCTGGCTTTATTCATTTCAAGACTGAGAAATATGA..................................................................................................CACAAACCCAGCCTTATATGGTGAGCTAGCAAAGGGCCAGAGCCCTAAG....................................................................................TTCATGGTTTTCGCGTGCTCTGACTCACGAGTCTGCCCATCCCATGTCCTCAACTTCCAACCTGGTGAGGCATTCATGGTTCGTAACATCGCCAACATGGTCCCTGCTTATGACAAG.....................................................................................GTCAGGTACTCTGGAGTAGGAGCAGCCATTGAATACGCCGTTCTTCATCTTAAGGTGGAGAACATCGTTGTCATTGGCCACAGTGCTTGTGGAGGTATCAAAGGTCTCATGTCACTACCTGAAGATGGTAGTGAATCAAC.............................................................................TGCCTTTATTGAGGATTGGGTAAAAATTTGTTTACCTGCCAAGGCAAAGGTTCTGGCCGATCACGGAGGGAAAGAATTTGCACATCAATGCACAGCTTGTGAGAAG................................................................................GAAGCTGTGAACGTTTCACTTGGAAATCTGCTTACGTATCCATTCGTGAGAGAAGGATTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0236E02-u8qcS/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E739538" ref_strand="+" ref_description="SGN-E739538 [LC17DD07]">
      <seq>caactgcttccattaacaattgccttactctctcccctgctcaagcttcccttaagaaacctactcgtcccgttgccttcgcaaggcttggcaactcttcttcttcttcttctattccaagtctcatcagaaacgagcccgtctttgctgcccctactcccatcatcaaccccattgtgagagaagaaatggcaaaagaatcctacgatcaagccattgctgcactcgagaaactcctcagcgagaaagcagaacttggaccagttgctgcagcaagagttgaccagatcactgctgaattgaaatcagcagacggcggcaaggcattcgaccctgttgagcacatgaaagctggctttattcatttcaagactgagaaatatgacacaaacccagccttatatggtgagctagcaaagggccagagccctaagttcatggttttcgcgtgctctgactcacgagtctgcccatcccatgtcctcaacttccaacctggtgaggcattcatggttcgtaacatcgccaacatggtccctgcttatgacaaggtcaggtactctggagtaggagcagccattgaatacgccgttcttcatcttaaggtggagaacatcgttgtcattggccacagtgcttgtggaggtatcaaaggtctcatgtcactacctgaagatggtagtgaatcaactgcctttattgaggattgggtaaaaatttgtttacctgccaaggcaaaggttctggccgatcacggagggaaagaatttgcacatcaatgcacagcttgtgagaaagaagctgtgaacgtttcacttggaaatctgc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0236E02-u8qcS/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0236E02.1" temp_strand="+" temp_description="C02HBa0236E02.1  AC215430.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0236E02 sequenced_by:kribb upload_account_name:korea">
        <position start="14704" stop="18124"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="15004" g_stop="15182" g_length="179"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="179" r_length="179" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="15183" i_stop="16379" i_length="1197">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.971" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="16380" g_stop="16441" g_length="62"/>
          <reference_exon_boundary r_type="cDNA" r_start="180" r_stop="241" r_length="62" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="16442" i_stop="16813" i_length="372">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="16814" g_stop="16957" g_length="144"/>
          <reference_exon_boundary r_type="cDNA" r_start="242" r_stop="385" r_length="144" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="16958" i_stop="17055" i_length="98">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="17056" g_stop="17104" g_length="49"/>
          <reference_exon_boundary r_type="cDNA" r_start="386" r_stop="434" r_length="49" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="17105" i_stop="17188" i_length="84">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.961" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="17189" g_stop="17305" g_length="117"/>
          <reference_exon_boundary r_type="cDNA" r_start="435" r_stop="551" r_length="117" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="17306" i_stop="17390" i_length="85">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.979" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="17391" g_stop="17530" g_length="140"/>
          <reference_exon_boundary r_type="cDNA" r_start="552" r_stop="691" r_length="140" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="17531" i_stop="17607" i_length="77">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.948" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="17608" g_stop="17713" g_length="106"/>
          <reference_exon_boundary r_type="cDNA" r_start="692" r_stop="797" r_length="106" r_score="0.991"/>
        </exon>
        <intron i_serial="7">
          <gDNA_intron_boundary i_start="17714" i_stop="17793" i_length="80">
            <donor d_prob="1.000" d_score="0.98"/>
            <acceptor a_prob="0.997" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="8">
          <gDNA_exon_boundary g_start="17794" g_stop="17824" g_length="31"/>
          <reference_exon_boundary r_type="cDNA" r_start="798" r_stop="828" r_length="31" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0236E02.1" gen_strand="+" ref_id="SGN-E739538" ref_strand="+">
        <total_alignment_score>0.999</total_alignment_score>
        <cumulative_length_of_scored_exons>828</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0236E02.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E739538" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="15004" e_stop="15182"/>
          <exon e_start="16380" e_stop="16441"/>
          <exon e_start="16814" e_stop="16957"/>
          <exon e_start="17056" e_stop="17104"/>
          <exon e_start="17189" e_stop="17305"/>
          <exon e_start="17391" e_stop="17530"/>
          <exon e_start="17608" e_stop="17713"/>
          <exon e_start="17794" e_stop="17824"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAACTGCTTCCATTAACAATTGCCTTACTCTCTCCCCTGCTCAAGCTTCCCTTAAGAAACCTACTCGTCCCGTTGCCTTCGCAAGGCTTGGCAACTCTTCTTCTTCTTCTTCTATTCCAAGTCTCATCAGAAACGAGCCCGTCTTTGCTGCCCCTACTCCCATCATCAACCCCATTGTGGTACGAATTTTTAACTTACATCACTGTATTTTAATCTGTTATAACAAGTTATTTATATTTGACGTTACTTAATTTATTTTTTAAGCAAGACATTTTTTTTGTCTTATCGTATTTTTTGTAACGACTTGTGTCCATGCATGCTAGTTCACGTGAAAATTCAATATTGGCATAGTTCTAAACTTTAGTTTCTAACCACCTTTATTATTGGTATTGTTATTTTTGGCCATGAATCTCCTGAAGTTAGGTGAATTGATCATGTCGCTCTAAATTGTACACGTCTATTGCGTGTACTCAATGACATATAATATATTATTGCAATCCTAAAATAAGTGTTATTTTAATTTATTTTGAACTCATTAAAATAAATATGATATTTTACTGAGTTACTTATATTTATTACTTTGATTTTTTTGAGTACTAATTTGTATTTTGAAACTTTTAAGATGACGAGAGGGTGGAAATAACAAATTAAATTTGAAAATGAACCAAAATAGAGGTGGCAATTAGGTAGAGGTTCTCGCAAAATGAATATTAAATATGTAGGGCCGTATTGTGAATTATGTGGATAATGTTTTTGCTTTCTATTTTTTTTTAAAAAAAATAATTATTACTTACAATAATCCAACGGGTATCCTCGTATGTGCCCATCCTACAAGTGATAAAATGATAAGTACCAGTCTACCATCAAGTTTGTAGGATAGAAACTATTTAGTATACATTGTTTTTGTCTTAATTTCTAGTTTTGGTATCCATCTAAATCGATACTCCATTATGTTAATTATTTCATTTCTTTCTTTTGACATCTACATCACTTTTTAATGTGGTTACCACTTGCTATAATCATACTTCACTTAGCATTTTATTTGAACTTAGTGAAAGTGAAATTTTTCCTAATAATTGGTCTAAAAATTGAAGAAGATTAAAGCCAAGAAATTGAGTTCTTCCTTCTTTCTTCCAACTTTGAAAGTACCGATAGATACTATCATATAAAAAGAAGAGGTGGTCTGACTAACTCAATGAAGTGAATTTTTCAAAAACATGCTCAGAAAAATGAGAAAAATGGAGTTTTTGAAAAGAAAAATTAACAGATATTTAAAGATAAATTTTTGAAATTTGGTTCAAAATTTATGGTCAAATATTAACTTATATTTATATATATACCTCTTCTAAAATGCTAATGAGAATTAGAATTTGCAGAGAGAAGAAATGGCAAAAGAATCCTACGATCAAGCCATTGCTGCACTCGAGAAACTCCTCAGGTTTGTACTCTCTCTACGACTCTACCTTCTAAATCACACTACTTTTTTCTCGATCAAGTGGGGCCCAAAAAATATACATACACCCACACATACGTAGACAAAAAAAATGTTAAAATTTGCGAATATGCAGAGAAAACATAATATAATCATGCAATGTTTACTCGTAAAATTCAATTTCCCGGCAATGAACATGTTACTTGGTTTCGAGTTCTCCAGATCTGCATTAATTTTACCATTCTATCATCATTTTTTTACCCCATATCTGCATTAATTTATCATGGTAATGGTGCTCAAACCACAAATCTTTTTTTTTTCTACCTGAAATATTGCTTCAATAATAATAATGGTCTAAATTATTTTCTGCAATTACAGCGAGAAAGCAGAACTTGGACCAGTTGCTGCAGCAAGAGTTGACCAGATCACTGCTGAATTGAAATCAGCAGACGGCGGCAAGGCATTCGACCCTGTTGAGCACATGAAAGCTGGCTTTATTCATTTCAAGACTGAGAAATATGAGTAAGCAAATTCATTCAAATTAAAATTTCTGCATATTTGATGTTGTAACATTATTAGTGTCTGATAATTTTTCCTGTTTTCTATTTATGTACCAACAGCACAAACCCAGCCTTATATGGTGAGCTAGCAAAGGGCCAGAGCCCTAAGGTACAAATTCCTTGTTAATTTGTTGTCTAATTTTATGATTTGTACGGTTTCTGATGAGTTCTATTGTCCTAAATGTGTAAACAGTTCATGGTTTTCGCGTGCTCTGACTCACGAGTCTGCCCATCCCATGTCCTCAACTTCCAACCTGGTGAGGCATTCATGGTTCGTAACATCGCCAACATGGTCCCTGCTTATGACAAGGTCAGTTACAAATCGATCAACTAGTCGATTATTTCGCTCTGGAATTGTGTTTTTTAAAAATAAAGATGGAATTGAATTTTTACAGGTCAGGTACTCTGGAGTAGGAGCAGCCATTGAATACGCCGTTCTTCATCTTAAGGTGGAGAACATCGTTGTCATTGGCCACAGTGCTTGTGGAGGTATCAAAGGTCTCATGTCACTACCTGAAGATGGTAGTGAATCAACGTACGTCACTCTATAAATCTATTCATTCAAAACACTTATCCTTAACAGATGATTGATTAATAATCTAATATACGCAGTGCCTTTATTGAGGATTGGGTAAAAATTTGTTTACCTGCCAAGGCAAAGGTTCTGGCCGATCACGGAGGGAAAGAATTTGCACATCAATGCACAGCTTGTGAGAAGGTAAAATTCAAATTTAACTTTTTGATTATCAATTAATTACATATATAGCAGTATTTTATAATTGATGAAAAATGTTGCAGGAAGCTGTGAACGTTTCACTTGGAAATCTGC</genome_strand>
        <mrna_strand>CAACTGCTTCCATTAACAATTGCCTTACTCTCTCCCCTGCTCAAGCTTCCCTTAAGAAACCTACTCGTCCCGTTGCCTTCGCAAGGCTTGGCAACTCTTCTTCTTCTTCTTCTATTCCAAGTCTCATCAGAAACGAGCCCGTCTTTGCTGCCCCTACTCCCATCATCAACCCCATTGTG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGAGAAGAAATGGCAAAAGAATCCTACGATCAAGCCATTGCTGCACTCGAGAAACTCCTCAG....................................................................................................................................................................................................................................................................................................................................................................................CGAGAAAGCAGAACTTGGACCAGTTGCTGCAGCAAGAGTTGACCAGATCACTGCTGAATTGAAATCAGCAGACGGCGGCAAGGCATTCGACCCTGTTGAGCACATGAAAGCTGGCTTTATTCATTTCAAGACTGAGAAATATGA..................................................................................................CACAAACCCAGCCTTATATGGTGAGCTAGCAAAGGGCCAGAGCCCTAAG....................................................................................TTCATGGTTTTCGCGTGCTCTGACTCACGAGTCTGCCCATCCCATGTCCTCAACTTCCAACCTGGTGAGGCATTCATGGTTCGTAACATCGCCAACATGGTCCCTGCTTATGACAAG.....................................................................................GTCAGGTACTCTGGAGTAGGAGCAGCCATTGAATACGCCGTTCTTCATCTTAAGGTGGAGAACATCGTTGTCATTGGCCACAGTGCTTGTGGAGGTATCAAAGGTCTCATGTCACTACCTGAAGATGGTAGTGAATCAAC.............................................................................TGCCTTTATTGAGGATTGGGTAAAAATTTGTTTACCTGCCAAGGCAAAGGTTCTGGCCGATCACGGAGGGAAAGAATTTGCACATCAATGCACAGCTTGTGAGAAA................................................................................GAAGCTGTGAACGTTTCACTTGGAAATCTGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0236E02-u8qcS/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E290767" ref_strand="+" ref_description="SGN-E290767 [cLET-10-P17]">
      <seq>aactgcttccattaacaattgccttactctctcccctgctcaagcttcccttaagaaacctactcgtcccgttgccttcgcaaggcttggcaactcttcttcttcttcttctattccaagtctcatcagaaacgagcccgtctttgctgcccctactcccatcatcaaccccattgtgagagaagaaatggcaaaagaatcctacgatcaagccattgctgcactcgagaaactcctcagcgagaaagcagaacttggaccagttgctgcagcaagagttgaccagatcactgctgaattgaaatcagcagacggcggcaaggcattcgaccctgttgagcacatgaaagctggctttattcatttcaagactgagaaatatgacacaaacccagccttatatggtgagctagcaaagggccagagccctaagttcatggttttcgcgtgctctgactcacgagtctgcccatcccatgtcctcaacttccaacctggtgaggcattcatggttcgtaacatcgccaacatggtccctgcttatgacaaggtca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0236E02-u8qcS/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0236E02.1" temp_strand="+" temp_description="C02HBa0236E02.1  AC215430.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0236E02 sequenced_by:kribb upload_account_name:korea">
        <position start="14705" stop="17609"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="15005" g_stop="15182" g_length="178"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="178" r_length="178" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="15183" i_stop="16379" i_length="1197">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.971" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="16380" g_stop="16441" g_length="62"/>
          <reference_exon_boundary r_type="cDNA" r_start="179" r_stop="240" r_length="62" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="16442" i_stop="16813" i_length="372">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="16814" g_stop="16957" g_length="144"/>
          <reference_exon_boundary r_type="cDNA" r_start="241" r_stop="384" r_length="144" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="16958" i_stop="17055" i_length="98">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="17056" g_stop="17104" g_length="49"/>
          <reference_exon_boundary r_type="cDNA" r_start="385" r_stop="433" r_length="49" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="17105" i_stop="17188" i_length="84">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.961" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="17189" g_stop="17305" g_length="117"/>
          <reference_exon_boundary r_type="cDNA" r_start="434" r_stop="550" r_length="117" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0236E02.1" gen_strand="+" ref_id="SGN-E290767" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>550</cumulative_length_of_scored_exons>
        <coverage percentage="0.993" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0236E02.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E290767" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="15005" e_stop="15182"/>
          <exon e_start="16380" e_stop="16441"/>
          <exon e_start="16814" e_stop="16957"/>
          <exon e_start="17056" e_stop="17104"/>
          <exon e_start="17189" e_stop="17305"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AACTGCTTCCATTAACAATTGCCTTACTCTCTCCCCTGCTCAAGCTTCCCTTAAGAAACCTACTCGTCCCGTTGCCTTCGCAAGGCTTGGCAACTCTTCTTCTTCTTCTTCTATTCCAAGTCTCATCAGAAACGAGCCCGTCTTTGCTGCCCCTACTCCCATCATCAACCCCATTGTGGTACGAATTTTTAACTTACATCACTGTATTTTAATCTGTTATAACAAGTTATTTATATTTGACGTTACTTAATTTATTTTTTAAGCAAGACATTTTTTTTGTCTTATCGTATTTTTTGTAACGACTTGTGTCCATGCATGCTAGTTCACGTGAAAATTCAATATTGGCATAGTTCTAAACTTTAGTTTCTAACCACCTTTATTATTGGTATTGTTATTTTTGGCCATGAATCTCCTGAAGTTAGGTGAATTGATCATGTCGCTCTAAATTGTACACGTCTATTGCGTGTACTCAATGACATATAATATATTATTGCAATCCTAAAATAAGTGTTATTTTAATTTATTTTGAACTCATTAAAATAAATATGATATTTTACTGAGTTACTTATATTTATTACTTTGATTTTTTTGAGTACTAATTTGTATTTTGAAACTTTTAAGATGACGAGAGGGTGGAAATAACAAATTAAATTTGAAAATGAACCAAAATAGAGGTGGCAATTAGGTAGAGGTTCTCGCAAAATGAATATTAAATATGTAGGGCCGTATTGTGAATTATGTGGATAATGTTTTTGCTTTCTATTTTTTTTTAAAAAAAATAATTATTACTTACAATAATCCAACGGGTATCCTCGTATGTGCCCATCCTACAAGTGATAAAATGATAAGTACCAGTCTACCATCAAGTTTGTAGGATAGAAACTATTTAGTATACATTGTTTTTGTCTTAATTTCTAGTTTTGGTATCCATCTAAATCGATACTCCATTATGTTAATTATTTCATTTCTTTCTTTTGACATCTACATCACTTTTTAATGTGGTTACCACTTGCTATAATCATACTTCACTTAGCATTTTATTTGAACTTAGTGAAAGTGAAATTTTTCCTAATAATTGGTCTAAAAATTGAAGAAGATTAAAGCCAAGAAATTGAGTTCTTCCTTCTTTCTTCCAACTTTGAAAGTACCGATAGATACTATCATATAAAAAGAAGAGGTGGTCTGACTAACTCAATGAAGTGAATTTTTCAAAAACATGCTCAGAAAAATGAGAAAAATGGAGTTTTTGAAAAGAAAAATTAACAGATATTTAAAGATAAATTTTTGAAATTTGGTTCAAAATTTATGGTCAAATATTAACTTATATTTATATATATACCTCTTCTAAAATGCTAATGAGAATTAGAATTTGCAGAGAGAAGAAATGGCAAAAGAATCCTACGATCAAGCCATTGCTGCACTCGAGAAACTCCTCAGGTTTGTACTCTCTCTACGACTCTACCTTCTAAATCACACTACTTTTTTCTCGATCAAGTGGGGCCCAAAAAATATACATACACCCACACATACGTAGACAAAAAAAATGTTAAAATTTGCGAATATGCAGAGAAAACATAATATAATCATGCAATGTTTACTCGTAAAATTCAATTTCCCGGCAATGAACATGTTACTTGGTTTCGAGTTCTCCAGATCTGCATTAATTTTACCATTCTATCATCATTTTTTTACCCCATATCTGCATTAATTTATCATGGTAATGGTGCTCAAACCACAAATCTTTTTTTTTTCTACCTGAAATATTGCTTCAATAATAATAATGGTCTAAATTATTTTCTGCAATTACAGCGAGAAAGCAGAACTTGGACCAGTTGCTGCAGCAAGAGTTGACCAGATCACTGCTGAATTGAAATCAGCAGACGGCGGCAAGGCATTCGACCCTGTTGAGCACATGAAAGCTGGCTTTATTCATTTCAAGACTGAGAAATATGAGTAAGCAAATTCATTCAAATTAAAATTTCTGCATATTTGATGTTGTAACATTATTAGTGTCTGATAATTTTTCCTGTTTTCTATTTATGTACCAACAGCACAAACCCAGCCTTATATGGTGAGCTAGCAAAGGGCCAGAGCCCTAAGGTACAAATTCCTTGTTAATTTGTTGTCTAATTTTATGATTTGTACGGTTTCTGATGAGTTCTATTGTCCTAAATGTGTAAACAGTTCATGGTTTTCGCGTGCTCTGACTCACGAGTCTGCCCATCCCATGTCCTCAACTTCCAACCTGGTGAGGCATTCATGGTTCGTAACATCGCCAACATGGTCCCTGCTTATGACAAG</genome_strand>
        <mrna_strand>AACTGCTTCCATTAACAATTGCCTTACTCTCTCCCCTGCTCAAGCTTCCCTTAAGAAACCTACTCGTCCCGTTGCCTTCGCAAGGCTTGGCAACTCTTCTTCTTCTTCTTCTATTCCAAGTCTCATCAGAAACGAGCCCGTCTTTGCTGCCCCTACTCCCATCATCAACCCCATTGTG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGAGAAGAAATGGCAAAAGAATCCTACGATCAAGCCATTGCTGCACTCGAGAAACTCCTCAG....................................................................................................................................................................................................................................................................................................................................................................................CGAGAAAGCAGAACTTGGACCAGTTGCTGCAGCAAGAGTTGACCAGATCACTGCTGAATTGAAATCAGCAGACGGCGGCAAGGCATTCGACCCTGTTGAGCACATGAAAGCTGGCTTTATTCATTTCAAGACTGAGAAATATGA..................................................................................................CACAAACCCAGCCTTATATGGTGAGCTAGCAAAGGGCCAGAGCCCTAAG....................................................................................TTCATGGTTTTCGCGTGCTCTGACTCACGAGTCTGCCCATCCCATGTCCTCAACTTCCAACCTGGTGAGGCATTCATGGTTCGTAACATCGCCAACATGGTCCCTGCTTATGACAAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0236E02-u8qcS/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E545775" ref_strand="+" ref_description="SGN-E545775 [TUS-68-M19]">
      <seq>ctgcttccattaacaattgcctcactctctcccctgctcaagcttcccttaagaaacctactcgtcccgttgccttcgcaaggcttggcaactcttcttcttcttcttcttctattccaagtctcatcagaaacgagcccgtctttgctgcccctactcccatcatcaaccccattgtgagagaagaaatggcaaaagaatcctacgatcaggccattgctgcactcgagaaactcctcagcgagaaagcagaacttggaccagttgctgcagcaagagttgatcagatcactgctgaattgaaatcagcagatggcggcaaggcattcgaccctgttgagcacatgaaagctggctttattcatttcaagactgagaaatatgatacaaacccagccttatatggtgaactagcaaagggccagagccctaagttcatggttttcgcgtgctctgactcacgagtgtgcccatcccatgtcctcaacttccaacctggtgaggcattcatggttcgtaacatcgccaacatggtccctgcttatgacaaggtcaggtactctggagtaggagcagccattgaatacgccgttcttcatcttaaggtggagaacatcgttgtcattggccacagtgcttgtggaggtatcaaaggtctcatgtcactacctgaagatggtagtgaatcgactgcctttattgaggattgggtgaaaatttgtttacctgccaaggcaaaggttctggccgatcacggagggaaagatttgga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0236E02-u8qcS/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0236E02.1" temp_strand="+" temp_description="C02HBa0236E02.1  AC215430.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0236E02 sequenced_by:kribb upload_account_name:korea">
        <position start="14707" stop="17989"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="15007" g_stop="15182" g_length="176"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="179" r_length="179" r_score="0.960"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="15183" i_stop="16379" i_length="1197">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.971" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="16380" g_stop="16441" g_length="62"/>
          <reference_exon_boundary r_type="cDNA" r_start="180" r_stop="241" r_length="62" r_score="0.984"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="16442" i_stop="16813" i_length="372">
            <donor d_prob="0.999" d_score="0.98"/>
            <acceptor a_prob="1.000" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="16814" g_stop="16957" g_length="144"/>
          <reference_exon_boundary r_type="cDNA" r_start="242" r_stop="385" r_length="144" r_score="0.986"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="16958" i_stop="17055" i_length="98">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="17056" g_stop="17104" g_length="49"/>
          <reference_exon_boundary r_type="cDNA" r_start="386" r_stop="434" r_length="49" r_score="0.959"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="17105" i_stop="17188" i_length="84">
            <donor d_prob="1.000" d_score="0.96"/>
            <acceptor a_prob="0.961" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="17189" g_stop="17305" g_length="117"/>
          <reference_exon_boundary r_type="cDNA" r_start="435" r_stop="551" r_length="117" r_score="0.991"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="17306" i_stop="17390" i_length="85">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.979" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="17391" g_stop="17530" g_length="140"/>
          <reference_exon_boundary r_type="cDNA" r_start="552" r_stop="691" r_length="140" r_score="0.993"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="17531" i_stop="17607" i_length="77">
            <donor d_prob="0.999" d_score="0.98"/>
            <acceptor a_prob="0.948" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="17608" g_stop="17689" g_length="82"/>
          <reference_exon_boundary r_type="cDNA" r_start="692" r_stop="772" r_length="81" r_score="0.963"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0236E02.1" gen_strand="+" ref_id="SGN-E545775" ref_strand="+">
        <total_alignment_score>0.979</total_alignment_score>
        <cumulative_length_of_scored_exons>770</cumulative_length_of_scored_exons>
        <coverage percentage="0.997" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0236E02.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E545775" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="15007" e_stop="15182"/>
          <exon e_start="16380" e_stop="16441"/>
          <exon e_start="16814" e_stop="16957"/>
          <exon e_start="17056" e_stop="17104"/>
          <exon e_start="17189" e_stop="17305"/>
          <exon e_start="17391" e_stop="17530"/>
          <exon e_start="17608" e_stop="17689"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTGCTTCCATTAACAATTGCCTTACTCTCTCCCCTGCTCAAGCTTCCCTTAAGAAACCTACTCGTCCCGTTGCCTTCGCAAGGCTTGGCAA--C-TCTTCTTCTTCTTCTTCTATTCCAAGTCTCATCAGAAACGAGCCCGTCTTTGCTGCCCCTACTCCCATCATCAACCCCATTGTGGTACGAATTTTTAACTTACATCACTGTATTTTAATCTGTTATAACAAGTTATTTATATTTGACGTTACTTAATTTATTTTTTAAGCAAGACATTTTTTTTGTCTTATCGTATTTTTTGTAACGACTTGTGTCCATGCATGCTAGTTCACGTGAAAATTCAATATTGGCATAGTTCTAAACTTTAGTTTCTAACCACCTTTATTATTGGTATTGTTATTTTTGGCCATGAATCTCCTGAAGTTAGGTGAATTGATCATGTCGCTCTAAATTGTACACGTCTATTGCGTGTACTCAATGACATATAATATATTATTGCAATCCTAAAATAAGTGTTATTTTAATTTATTTTGAACTCATTAAAATAAATATGATATTTTACTGAGTTACTTATATTTATTACTTTGATTTTTTTGAGTACTAATTTGTATTTTGAAACTTTTAAGATGACGAGAGGGTGGAAATAACAAATTAAATTTGAAAATGAACCAAAATAGAGGTGGCAATTAGGTAGAGGTTCTCGCAAAATGAATATTAAATATGTAGGGCCGTATTGTGAATTATGTGGATAATGTTTTTGCTTTCTATTTTTTTTTAAAAAAAATAATTATTACTTACAATAATCCAACGGGTATCCTCGTATGTGCCCATCCTACAAGTGATAAAATGATAAGTACCAGTCTACCATCAAGTTTGTAGGATAGAAACTATTTAGTATACATTGTTTTTGTCTTAATTTCTAGTTTTGGTATCCATCTAAATCGATACTCCATTATGTTAATTATTTCATTTCTTTCTTTTGACATCTACATCACTTTTTAATGTGGTTACCACTTGCTATAATCATACTTCACTTAGCATTTTATTTGAACTTAGTGAAAGTGAAATTTTTCCTAATAATTGGTCTAAAAATTGAAGAAGATTAAAGCCAAGAAATTGAGTTCTTCCTTCTTTCTTCCAACTTTGAAAGTACCGATAGATACTATCATATAAAAAGAAGAGGTGGTCTGACTAACTCAATGAAGTGAATTTTTCAAAAACATGCTCAGAAAAATGAGAAAAATGGAGTTTTTGAAAAGAAAAATTAACAGATATTTAAAGATAAATTTTTGAAATTTGGTTCAAAATTTATGGTCAAATATTAACTTATATTTATATATATACCTCTTCTAAAATGCTAATGAGAATTAGAATTTGCAGAGAGAAGAAATGGCAAAAGAATCCTACGATCAAGCCATTGCTGCACTCGAGAAACTCCTCAGGTTTGTACTCTCTCTACGACTCTACCTTCTAAATCACACTACTTTTTTCTCGATCAAGTGGGGCCCAAAAAATATACATACACCCACACATACGTAGACAAAAAAAATGTTAAAATTTGCGAATATGCAGAGAAAACATAATATAATCATGCAATGTTTACTCGTAAAATTCAATTTCCCGGCAATGAACATGTTACTTGGTTTCGAGTTCTCCAGATCTGCATTAATTTTACCATTCTATCATCATTTTTTTACCCCATATCTGCATTAATTTATCATGGTAATGGTGCTCAAACCACAAATCTTTTTTTTTTCTACCTGAAATATTGCTTCAATAATAATAATGGTCTAAATTATTTTCTGCAATTACAGCGAGAAAGCAGAACTTGGACCAGTTGCTGCAGCAAGAGTTGACCAGATCACTGCTGAATTGAAATCAGCAGACGGCGGCAAGGCATTCGACCCTGTTGAGCACATGAAAGCTGGCTTTATTCATTTCAAGACTGAGAAATATGAGTAAGCAAATTCATTCAAATTAAAATTTCTGCATATTTGATGTTGTAACATTATTAGTGTCTGATAATTTTTCCTGTTTTCTATTTATGTACCAACAGCACAAACCCAGCCTTATATGGTGAGCTAGCAAAGGGCCAGAGCCCTAAGGTACAAATTCCTTGTTAATTTGTTGTCTAATTTTATGATTTGTACGGTTTCTGATGAGTTCTATTGTCCTAAATGTGTAAACAGTTCATGGTTTTCGCGTGCTCTGACTCACGAGTCTGCCCATCCCATGTCCTCAACTTCCAACCTGGTGAGGCATTCATGGTTCGTAACATCGCCAACATGGTCCCTGCTTATGACAAGGTCAGTTACAAATCGATCAACTAGTCGATTATTTCGCTCTGGAATTGTGTTTTTTAAAAATAAAGATGGAATTGAATTTTTACAGGTCAGGTACTCTGGAGTAGGAGCAGCCATTGAATACGCCGTTCTTCATCTTAAGGTGGAGAACATCGTTGTCATTGGCCACAGTGCTTGTGGAGGTATCAAAGGTCTCATGTCACTACCTGAAGATGGTAGTGAATCAACGTACGTCACTCTATAAATCTATTCATTCAAAACACTTATCCTTAACAGATGATTGATTAATAATCTAATATACGCAGTGCCTTTATTGAGGATTGGGTAAAAATTTGTTTACCTGCCAAGGCAAAGGTTCTGGCCGATCACGGAGGGAAAGAATTTGCA</genome_strand>
        <mrna_strand>CTGCTTCCATTAACAATTGCCTCACTCTCTCCCCTGCTCAAGCTTCCCTTAAGAAACCTACTCGTCCCGTTGCCTTCGCAAGGCTTGGCAACTCTTCTTCTTCTTCTTCTTCTATTCCAAGTCTCATCAGAAACGAGCCCGTCTTTGCTGCCCCTACTCCCATCATCAACCCCATTGTG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGAGAAGAAATGGCAAAAGAATCCTACGATCAGGCCATTGCTGCACTCGAGAAACTCCTCAG....................................................................................................................................................................................................................................................................................................................................................................................CGAGAAAGCAGAACTTGGACCAGTTGCTGCAGCAAGAGTTGATCAGATCACTGCTGAATTGAAATCAGCAGATGGCGGCAAGGCATTCGACCCTGTTGAGCACATGAAAGCTGGCTTTATTCATTTCAAGACTGAGAAATATGA..................................................................................................TACAAACCCAGCCTTATATGGTGAACTAGCAAAGGGCCAGAGCCCTAAG....................................................................................TTCATGGTTTTCGCGTGCTCTGACTCACGAGTGTGCCCATCCCATGTCCTCAACTTCCAACCTGGTGAGGCATTCATGGTTCGTAACATCGCCAACATGGTCCCTGCTTATGACAAG.....................................................................................GTCAGGTACTCTGGAGTAGGAGCAGCCATTGAATACGCCGTTCTTCATCTTAAGGTGGAGAACATCGTTGTCATTGGCCACAGTGCTTGTGGAGGTATCAAAGGTCTCATGTCACTACCTGAAGATGGTAGTGAATCGAC.............................................................................TGCCTTTATTGAGGATTGGGTGAAAATTTGTTTACCTGCCAAGGCAAAGGTTCTGGCCGATCACGGAGGGAAAG-ATTTGGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0236E02-u8qcS/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E545782" ref_strand="+" ref_description="SGN-E545782 [TUS-68-M23]">
      <seq>ctgcttccattaacaattgcctcactctctcccctgctcaagcttcccttaagaaacctactcgtcccgttgccttcgcaaggcttggcaactcttcttcttcttcttcttctattccaagtctcatcagaaacgagcccgtctttgctgcccctactcccatcatcaaccccattgtgagagaagaaatggcaaaagaatcctacgatcaggccattgctgcactcgagaaactcctcagcgagaaagcagaacttggaccagttgctgcagcaagagttgatcagatcactgctgaattgaaatcagcagatggcggcaaggcattcgaccctgttgagcacatgaaagctggctttattcatttcaagactgagaaatatgatacaaacccagccttatatggtgaactagcaaagggccagagccctaagttcatggttttcgcgtgctctgactcacgagtgtgcccatcccatgtcctcaacttccaacctggtgaggcattcatggttcgtaacatcgccaacatggtccctgcttatgacaaggtcaggtactctggagtaggagcagccattgaatacgccgttcttcatcttaaggaggaaaacatcgttgtcattggccacagtgcttgtggaggtatcataagtctcatgtcacta</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0236E02-u8qcS/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0236E02.1" temp_strand="+" temp_description="C02HBa0236E02.1  AC215430.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0236E02 sequenced_by:kribb upload_account_name:korea">
        <position start="14707" stop="17807"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="15007" g_stop="15182" g_length="176"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="179" r_length="179" r_score="0.960"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="15183" i_stop="16379" i_length="1197">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.971" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="16380" g_stop="16441" g_length="62"/>
          <reference_exon_boundary r_type="cDNA" r_start="180" r_stop="241" r_length="62" r_score="0.984"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="16442" i_stop="16813" i_length="372">
            <donor d_prob="0.999" d_score="0.98"/>
            <acceptor a_prob="1.000" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="16814" g_stop="16957" g_length="144"/>
          <reference_exon_boundary r_type="cDNA" r_start="242" r_stop="385" r_length="144" r_score="0.986"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="16958" i_stop="17055" i_length="98">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="17056" g_stop="17104" g_length="49"/>
          <reference_exon_boundary r_type="cDNA" r_start="386" r_stop="434" r_length="49" r_score="0.959"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="17105" i_stop="17188" i_length="84">
            <donor d_prob="1.000" d_score="0.96"/>
            <acceptor a_prob="0.961" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="17189" g_stop="17305" g_length="117"/>
          <reference_exon_boundary r_type="cDNA" r_start="435" r_stop="551" r_length="117" r_score="0.991"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="17306" i_stop="17390" i_length="85">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.979" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="17391" g_stop="17507" g_length="117"/>
          <reference_exon_boundary r_type="cDNA" r_start="552" r_stop="668" r_length="117" r_score="0.966"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0236E02.1" gen_strand="+" ref_id="SGN-E545782" ref_strand="+">
        <total_alignment_score>0.976</total_alignment_score>
        <cumulative_length_of_scored_exons>665</cumulative_length_of_scored_exons>
        <coverage percentage="0.996" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0236E02.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E545782" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="15007" e_stop="15182"/>
          <exon e_start="16380" e_stop="16441"/>
          <exon e_start="16814" e_stop="16957"/>
          <exon e_start="17056" e_stop="17104"/>
          <exon e_start="17189" e_stop="17305"/>
          <exon e_start="17391" e_stop="17507"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTGCTTCCATTAACAATTGCCTTACTCTCTCCCCTGCTCAAGCTTCCCTTAAGAAACCTACTCGTCCCGTTGCCTTCGCAAGGCTTGGCAA--C-TCTTCTTCTTCTTCTTCTATTCCAAGTCTCATCAGAAACGAGCCCGTCTTTGCTGCCCCTACTCCCATCATCAACCCCATTGTGGTACGAATTTTTAACTTACATCACTGTATTTTAATCTGTTATAACAAGTTATTTATATTTGACGTTACTTAATTTATTTTTTAAGCAAGACATTTTTTTTGTCTTATCGTATTTTTTGTAACGACTTGTGTCCATGCATGCTAGTTCACGTGAAAATTCAATATTGGCATAGTTCTAAACTTTAGTTTCTAACCACCTTTATTATTGGTATTGTTATTTTTGGCCATGAATCTCCTGAAGTTAGGTGAATTGATCATGTCGCTCTAAATTGTACACGTCTATTGCGTGTACTCAATGACATATAATATATTATTGCAATCCTAAAATAAGTGTTATTTTAATTTATTTTGAACTCATTAAAATAAATATGATATTTTACTGAGTTACTTATATTTATTACTTTGATTTTTTTGAGTACTAATTTGTATTTTGAAACTTTTAAGATGACGAGAGGGTGGAAATAACAAATTAAATTTGAAAATGAACCAAAATAGAGGTGGCAATTAGGTAGAGGTTCTCGCAAAATGAATATTAAATATGTAGGGCCGTATTGTGAATTATGTGGATAATGTTTTTGCTTTCTATTTTTTTTTAAAAAAAATAATTATTACTTACAATAATCCAACGGGTATCCTCGTATGTGCCCATCCTACAAGTGATAAAATGATAAGTACCAGTCTACCATCAAGTTTGTAGGATAGAAACTATTTAGTATACATTGTTTTTGTCTTAATTTCTAGTTTTGGTATCCATCTAAATCGATACTCCATTATGTTAATTATTTCATTTCTTTCTTTTGACATCTACATCACTTTTTAATGTGGTTACCACTTGCTATAATCATACTTCACTTAGCATTTTATTTGAACTTAGTGAAAGTGAAATTTTTCCTAATAATTGGTCTAAAAATTGAAGAAGATTAAAGCCAAGAAATTGAGTTCTTCCTTCTTTCTTCCAACTTTGAAAGTACCGATAGATACTATCATATAAAAAGAAGAGGTGGTCTGACTAACTCAATGAAGTGAATTTTTCAAAAACATGCTCAGAAAAATGAGAAAAATGGAGTTTTTGAAAAGAAAAATTAACAGATATTTAAAGATAAATTTTTGAAATTTGGTTCAAAATTTATGGTCAAATATTAACTTATATTTATATATATACCTCTTCTAAAATGCTAATGAGAATTAGAATTTGCAGAGAGAAGAAATGGCAAAAGAATCCTACGATCAAGCCATTGCTGCACTCGAGAAACTCCTCAGGTTTGTACTCTCTCTACGACTCTACCTTCTAAATCACACTACTTTTTTCTCGATCAAGTGGGGCCCAAAAAATATACATACACCCACACATACGTAGACAAAAAAAATGTTAAAATTTGCGAATATGCAGAGAAAACATAATATAATCATGCAATGTTTACTCGTAAAATTCAATTTCCCGGCAATGAACATGTTACTTGGTTTCGAGTTCTCCAGATCTGCATTAATTTTACCATTCTATCATCATTTTTTTACCCCATATCTGCATTAATTTATCATGGTAATGGTGCTCAAACCACAAATCTTTTTTTTTTCTACCTGAAATATTGCTTCAATAATAATAATGGTCTAAATTATTTTCTGCAATTACAGCGAGAAAGCAGAACTTGGACCAGTTGCTGCAGCAAGAGTTGACCAGATCACTGCTGAATTGAAATCAGCAGACGGCGGCAAGGCATTCGACCCTGTTGAGCACATGAAAGCTGGCTTTATTCATTTCAAGACTGAGAAATATGAGTAAGCAAATTCATTCAAATTAAAATTTCTGCATATTTGATGTTGTAACATTATTAGTGTCTGATAATTTTTCCTGTTTTCTATTTATGTACCAACAGCACAAACCCAGCCTTATATGGTGAGCTAGCAAAGGGCCAGAGCCCTAAGGTACAAATTCCTTGTTAATTTGTTGTCTAATTTTATGATTTGTACGGTTTCTGATGAGTTCTATTGTCCTAAATGTGTAAACAGTTCATGGTTTTCGCGTGCTCTGACTCACGAGTCTGCCCATCCCATGTCCTCAACTTCCAACCTGGTGAGGCATTCATGGTTCGTAACATCGCCAACATGGTCCCTGCTTATGACAAGGTCAGTTACAAATCGATCAACTAGTCGATTATTTCGCTCTGGAATTGTGTTTTTTAAAAATAAAGATGGAATTGAATTTTTACAGGTCAGGTACTCTGGAGTAGGAGCAGCCATTGAATACGCCGTTCTTCATCTTAAGGTGGAGAACATCGTTGTCATTGGCCACAGTGCTTGTGGAGGTATCAAAGGTCTCATGTCACTA</genome_strand>
        <mrna_strand>CTGCTTCCATTAACAATTGCCTCACTCTCTCCCCTGCTCAAGCTTCCCTTAAGAAACCTACTCGTCCCGTTGCCTTCGCAAGGCTTGGCAACTCTTCTTCTTCTTCTTCTTCTATTCCAAGTCTCATCAGAAACGAGCCCGTCTTTGCTGCCCCTACTCCCATCATCAACCCCATTGTG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGAGAAGAAATGGCAAAAGAATCCTACGATCAGGCCATTGCTGCACTCGAGAAACTCCTCAG....................................................................................................................................................................................................................................................................................................................................................................................CGAGAAAGCAGAACTTGGACCAGTTGCTGCAGCAAGAGTTGATCAGATCACTGCTGAATTGAAATCAGCAGATGGCGGCAAGGCATTCGACCCTGTTGAGCACATGAAAGCTGGCTTTATTCATTTCAAGACTGAGAAATATGA..................................................................................................TACAAACCCAGCCTTATATGGTGAACTAGCAAAGGGCCAGAGCCCTAAG....................................................................................TTCATGGTTTTCGCGTGCTCTGACTCACGAGTGTGCCCATCCCATGTCCTCAACTTCCAACCTGGTGAGGCATTCATGGTTCGTAACATCGCCAACATGGTCCCTGCTTATGACAAG.....................................................................................GTCAGGTACTCTGGAGTAGGAGCAGCCATTGAATACGCCGTTCTTCATCTTAAGGAGGAAAACATCGTTGTCATTGGCCACAGTGCTTGTGGAGGTATCATAAGTCTCATGTCACTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0236E02-u8qcS/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E355635" ref_strand="+" ref_description="SGN-E355635 [cLHT-1-F23]">
      <seq>tgcttccattaacaattgcctcactctctcccctgctcaagcttcccttaagaaacctactcgtcccgttgccttcgcaaggcttggcaactcttcttcttcttcttcttctattccaagtctcatcagaaacgagcccgtctttgctgcccctactcccatcatcaaccccattgtgagagaagaaatggcaaaagaatcctacgatcaggccattgctgcactcgagaaactcctcagcgagaaagcagaacttggaccagttgctgcagcaagagttgatcagatcactgctgaattgaaatcagcagatggcggcaaggcattcgaccctgttgagcacatgaaagctggctttattcatttcaagactgagaaatatgatacaaacccagccttatatggtgaactagcaaagggccagagccctaagttcatggttttcgcgtgctctgactcacgagtgtgcccatcccatgtcctcaacttccaacctggtgaggcattcatggttcgtaacatcgccaacatggtccctgcttatgac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0236E02-u8qcS/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0236E02.1" temp_strand="+" temp_description="C02HBa0236E02.1  AC215430.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0236E02 sequenced_by:kribb upload_account_name:korea">
        <position start="14708" stop="17602"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="15008" g_stop="15182" g_length="175"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="178" r_length="178" r_score="0.960"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="15183" i_stop="16379" i_length="1197">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.971" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="16380" g_stop="16441" g_length="62"/>
          <reference_exon_boundary r_type="cDNA" r_start="179" r_stop="240" r_length="62" r_score="0.984"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="16442" i_stop="16813" i_length="372">
            <donor d_prob="0.999" d_score="0.98"/>
            <acceptor a_prob="1.000" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="16814" g_stop="16957" g_length="144"/>
          <reference_exon_boundary r_type="cDNA" r_start="241" r_stop="384" r_length="144" r_score="0.986"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="16958" i_stop="17055" i_length="98">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="17056" g_stop="17104" g_length="49"/>
          <reference_exon_boundary r_type="cDNA" r_start="385" r_stop="433" r_length="49" r_score="0.959"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="17105" i_stop="17188" i_length="84">
            <donor d_prob="1.000" d_score="0.96"/>
            <acceptor a_prob="0.961" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="17189" g_stop="17302" g_length="114"/>
          <reference_exon_boundary r_type="cDNA" r_start="434" r_stop="547" r_length="114" r_score="0.991"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0236E02.1" gen_strand="+" ref_id="SGN-E355635" ref_strand="+">
        <total_alignment_score>0.978</total_alignment_score>
        <cumulative_length_of_scored_exons>544</cumulative_length_of_scored_exons>
        <coverage percentage="0.995" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0236E02.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E355635" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="15008" e_stop="15182"/>
          <exon e_start="16380" e_stop="16441"/>
          <exon e_start="16814" e_stop="16957"/>
          <exon e_start="17056" e_stop="17104"/>
          <exon e_start="17189" e_stop="17302"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGCTTCCATTAACAATTGCCTTACTCTCTCCCCTGCTCAAGCTTCCCTTAAGAAACCTACTCGTCCCGTTGCCTTCGCAAGGCTTGGCAA--C-TCTTCTTCTTCTTCTTCTATTCCAAGTCTCATCAGAAACGAGCCCGTCTTTGCTGCCCCTACTCCCATCATCAACCCCATTGTGGTACGAATTTTTAACTTACATCACTGTATTTTAATCTGTTATAACAAGTTATTTATATTTGACGTTACTTAATTTATTTTTTAAGCAAGACATTTTTTTTGTCTTATCGTATTTTTTGTAACGACTTGTGTCCATGCATGCTAGTTCACGTGAAAATTCAATATTGGCATAGTTCTAAACTTTAGTTTCTAACCACCTTTATTATTGGTATTGTTATTTTTGGCCATGAATCTCCTGAAGTTAGGTGAATTGATCATGTCGCTCTAAATTGTACACGTCTATTGCGTGTACTCAATGACATATAATATATTATTGCAATCCTAAAATAAGTGTTATTTTAATTTATTTTGAACTCATTAAAATAAATATGATATTTTACTGAGTTACTTATATTTATTACTTTGATTTTTTTGAGTACTAATTTGTATTTTGAAACTTTTAAGATGACGAGAGGGTGGAAATAACAAATTAAATTTGAAAATGAACCAAAATAGAGGTGGCAATTAGGTAGAGGTTCTCGCAAAATGAATATTAAATATGTAGGGCCGTATTGTGAATTATGTGGATAATGTTTTTGCTTTCTATTTTTTTTTAAAAAAAATAATTATTACTTACAATAATCCAACGGGTATCCTCGTATGTGCCCATCCTACAAGTGATAAAATGATAAGTACCAGTCTACCATCAAGTTTGTAGGATAGAAACTATTTAGTATACATTGTTTTTGTCTTAATTTCTAGTTTTGGTATCCATCTAAATCGATACTCCATTATGTTAATTATTTCATTTCTTTCTTTTGACATCTACATCACTTTTTAATGTGGTTACCACTTGCTATAATCATACTTCACTTAGCATTTTATTTGAACTTAGTGAAAGTGAAATTTTTCCTAATAATTGGTCTAAAAATTGAAGAAGATTAAAGCCAAGAAATTGAGTTCTTCCTTCTTTCTTCCAACTTTGAAAGTACCGATAGATACTATCATATAAAAAGAAGAGGTGGTCTGACTAACTCAATGAAGTGAATTTTTCAAAAACATGCTCAGAAAAATGAGAAAAATGGAGTTTTTGAAAAGAAAAATTAACAGATATTTAAAGATAAATTTTTGAAATTTGGTTCAAAATTTATGGTCAAATATTAACTTATATTTATATATATACCTCTTCTAAAATGCTAATGAGAATTAGAATTTGCAGAGAGAAGAAATGGCAAAAGAATCCTACGATCAAGCCATTGCTGCACTCGAGAAACTCCTCAGGTTTGTACTCTCTCTACGACTCTACCTTCTAAATCACACTACTTTTTTCTCGATCAAGTGGGGCCCAAAAAATATACATACACCCACACATACGTAGACAAAAAAAATGTTAAAATTTGCGAATATGCAGAGAAAACATAATATAATCATGCAATGTTTACTCGTAAAATTCAATTTCCCGGCAATGAACATGTTACTTGGTTTCGAGTTCTCCAGATCTGCATTAATTTTACCATTCTATCATCATTTTTTTACCCCATATCTGCATTAATTTATCATGGTAATGGTGCTCAAACCACAAATCTTTTTTTTTTCTACCTGAAATATTGCTTCAATAATAATAATGGTCTAAATTATTTTCTGCAATTACAGCGAGAAAGCAGAACTTGGACCAGTTGCTGCAGCAAGAGTTGACCAGATCACTGCTGAATTGAAATCAGCAGACGGCGGCAAGGCATTCGACCCTGTTGAGCACATGAAAGCTGGCTTTATTCATTTCAAGACTGAGAAATATGAGTAAGCAAATTCATTCAAATTAAAATTTCTGCATATTTGATGTTGTAACATTATTAGTGTCTGATAATTTTTCCTGTTTTCTATTTATGTACCAACAGCACAAACCCAGCCTTATATGGTGAGCTAGCAAAGGGCCAGAGCCCTAAGGTACAAATTCCTTGTTAATTTGTTGTCTAATTTTATGATTTGTACGGTTTCTGATGAGTTCTATTGTCCTAAATGTGTAAACAGTTCATGGTTTTCGCGTGCTCTGACTCACGAGTCTGCCCATCCCATGTCCTCAACTTCCAACCTGGTGAGGCATTCATGGTTCGTAACATCGCCAACATGGTCCCTGCTTATGAC</genome_strand>
        <mrna_strand>TGCTTCCATTAACAATTGCCTCACTCTCTCCCCTGCTCAAGCTTCCCTTAAGAAACCTACTCGTCCCGTTGCCTTCGCAAGGCTTGGCAACTCTTCTTCTTCTTCTTCTTCTATTCCAAGTCTCATCAGAAACGAGCCCGTCTTTGCTGCCCCTACTCCCATCATCAACCCCATTGTG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGAGAAGAAATGGCAAAAGAATCCTACGATCAGGCCATTGCTGCACTCGAGAAACTCCTCAG....................................................................................................................................................................................................................................................................................................................................................................................CGAGAAAGCAGAACTTGGACCAGTTGCTGCAGCAAGAGTTGATCAGATCACTGCTGAATTGAAATCAGCAGATGGCGGCAAGGCATTCGACCCTGTTGAGCACATGAAAGCTGGCTTTATTCATTTCAAGACTGAGAAATATGA..................................................................................................TACAAACCCAGCCTTATATGGTGAACTAGCAAAGGGCCAGAGCCCTAAG....................................................................................TTCATGGTTTTCGCGTGCTCTGACTCACGAGTGTGCCCATCCCATGTCCTCAACTTCCAACCTGGTGAGGCATTCATGGTTCGTAACATCGCCAACATGGTCCCTGCTTATGAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0236E02-u8qcS/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E340927" ref_strand="+" ref_description="SGN-E340927 [cTOF-5-A14]">
      <seq>tgcttccattaacaattgccttactctctcccctgctcaagcttcccttaagaaacctactcgtcccgttgccttcgcaaggcttggcaactcttcttcttcttcttctattccaagtctcatcagaaacgagcccgtctttgctgcccctactcccatcatcaaccccattgtgagagaagaaatggcaaaagaatcctacgatcaagccattgctgcactcgagaaactcctcagcgagaaagcagaacttggaccagttgctgcagcaagagttgaccagatcactgctgaattgaaatcagcagacggcggcaaggcattcgaccctgttgagcacatgaaagctggctntattcatttcaagactgagaaatatgacacanacccagccttatatggtgagctagcaaagggccagagccctaaagtcatggttttcgcgtgctctgactcacgagtctgcccatcccatgtcctcaacttcaacctggtgaggcattca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0236E02-u8qcS/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0236E02.1" temp_strand="+" temp_description="C02HBa0236E02.1  AC215430.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0236E02 sequenced_by:kribb upload_account_name:korea">
        <position start="14708" stop="17564"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="15008" g_stop="15182" g_length="175"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="175" r_length="175" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="15183" i_stop="16379" i_length="1197">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.971" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="16380" g_stop="16441" g_length="62"/>
          <reference_exon_boundary r_type="cDNA" r_start="176" r_stop="237" r_length="62" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="16442" i_stop="16813" i_length="372">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="16814" g_stop="16957" g_length="144"/>
          <reference_exon_boundary r_type="cDNA" r_start="238" r_stop="381" r_length="144" r_score="0.993"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="16958" i_stop="17055" i_length="98">
            <donor d_prob="0.999" d_score="0.98"/>
            <acceptor a_prob="0.999" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="17056" g_stop="17104" g_length="49"/>
          <reference_exon_boundary r_type="cDNA" r_start="382" r_stop="430" r_length="49" r_score="0.959"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="17105" i_stop="17188" i_length="84">
            <donor d_prob="1.000" d_score="0.96"/>
            <acceptor a_prob="0.961" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="17189" g_stop="17264" g_length="76"/>
          <reference_exon_boundary r_type="cDNA" r_start="431" r_stop="505" r_length="75" r_score="0.974"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0236E02.1" gen_strand="+" ref_id="SGN-E340927" ref_strand="+">
        <total_alignment_score>0.993</total_alignment_score>
        <cumulative_length_of_scored_exons>506</cumulative_length_of_scored_exons>
        <coverage percentage="1.002" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0236E02.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E340927" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="15008" e_stop="15182"/>
          <exon e_start="16380" e_stop="16441"/>
          <exon e_start="16814" e_stop="16957"/>
          <exon e_start="17056" e_stop="17104"/>
          <exon e_start="17189" e_stop="17264"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGCTTCCATTAACAATTGCCTTACTCTCTCCCCTGCTCAAGCTTCCCTTAAGAAACCTACTCGTCCCGTTGCCTTCGCAAGGCTTGGCAACTCTTCTTCTTCTTCTTCTATTCCAAGTCTCATCAGAAACGAGCCCGTCTTTGCTGCCCCTACTCCCATCATCAACCCCATTGTGGTACGAATTTTTAACTTACATCACTGTATTTTAATCTGTTATAACAAGTTATTTATATTTGACGTTACTTAATTTATTTTTTAAGCAAGACATTTTTTTTGTCTTATCGTATTTTTTGTAACGACTTGTGTCCATGCATGCTAGTTCACGTGAAAATTCAATATTGGCATAGTTCTAAACTTTAGTTTCTAACCACCTTTATTATTGGTATTGTTATTTTTGGCCATGAATCTCCTGAAGTTAGGTGAATTGATCATGTCGCTCTAAATTGTACACGTCTATTGCGTGTACTCAATGACATATAATATATTATTGCAATCCTAAAATAAGTGTTATTTTAATTTATTTTGAACTCATTAAAATAAATATGATATTTTACTGAGTTACTTATATTTATTACTTTGATTTTTTTGAGTACTAATTTGTATTTTGAAACTTTTAAGATGACGAGAGGGTGGAAATAACAAATTAAATTTGAAAATGAACCAAAATAGAGGTGGCAATTAGGTAGAGGTTCTCGCAAAATGAATATTAAATATGTAGGGCCGTATTGTGAATTATGTGGATAATGTTTTTGCTTTCTATTTTTTTTTAAAAAAAATAATTATTACTTACAATAATCCAACGGGTATCCTCGTATGTGCCCATCCTACAAGTGATAAAATGATAAGTACCAGTCTACCATCAAGTTTGTAGGATAGAAACTATTTAGTATACATTGTTTTTGTCTTAATTTCTAGTTTTGGTATCCATCTAAATCGATACTCCATTATGTTAATTATTTCATTTCTTTCTTTTGACATCTACATCACTTTTTAATGTGGTTACCACTTGCTATAATCATACTTCACTTAGCATTTTATTTGAACTTAGTGAAAGTGAAATTTTTCCTAATAATTGGTCTAAAAATTGAAGAAGATTAAAGCCAAGAAATTGAGTTCTTCCTTCTTTCTTCCAACTTTGAAAGTACCGATAGATACTATCATATAAAAAGAAGAGGTGGTCTGACTAACTCAATGAAGTGAATTTTTCAAAAACATGCTCAGAAAAATGAGAAAAATGGAGTTTTTGAAAAGAAAAATTAACAGATATTTAAAGATAAATTTTTGAAATTTGGTTCAAAATTTATGGTCAAATATTAACTTATATTTATATATATACCTCTTCTAAAATGCTAATGAGAATTAGAATTTGCAGAGAGAAGAAATGGCAAAAGAATCCTACGATCAAGCCATTGCTGCACTCGAGAAACTCCTCAGGTTTGTACTCTCTCTACGACTCTACCTTCTAAATCACACTACTTTTTTCTCGATCAAGTGGGGCCCAAAAAATATACATACACCCACACATACGTAGACAAAAAAAATGTTAAAATTTGCGAATATGCAGAGAAAACATAATATAATCATGCAATGTTTACTCGTAAAATTCAATTTCCCGGCAATGAACATGTTACTTGGTTTCGAGTTCTCCAGATCTGCATTAATTTTACCATTCTATCATCATTTTTTTACCCCATATCTGCATTAATTTATCATGGTAATGGTGCTCAAACCACAAATCTTTTTTTTTTCTACCTGAAATATTGCTTCAATAATAATAATGGTCTAAATTATTTTCTGCAATTACAGCGAGAAAGCAGAACTTGGACCAGTTGCTGCAGCAAGAGTTGACCAGATCACTGCTGAATTGAAATCAGCAGACGGCGGCAAGGCATTCGACCCTGTTGAGCACATGAAAGCTGGCTTTATTCATTTCAAGACTGAGAAATATGAGTAAGCAAATTCATTCAAATTAAAATTTCTGCATATTTGATGTTGTAACATTATTAGTGTCTGATAATTTTTCCTGTTTTCTATTTATGTACCAACAGCACAAACCCAGCCTTATATGGTGAGCTAGCAAAGGGCCAGAGCCCTAAGGTACAAATTCCTTGTTAATTTGTTGTCTAATTTTATGATTTGTACGGTTTCTGATGAGTTCTATTGTCCTAAATGTGTAAACAGTTCATGGTTTTCGCGTGCTCTGACTCACGAGTCTGCCCATCCCATGTCCTCAACTTCCAACCTGGTGAGGCATTCA</genome_strand>
        <mrna_strand>TGCTTCCATTAACAATTGCCTTACTCTCTCCCCTGCTCAAGCTTCCCTTAAGAAACCTACTCGTCCCGTTGCCTTCGCAAGGCTTGGCAACTCTTCTTCTTCTTCTTCTATTCCAAGTCTCATCAGAAACGAGCCCGTCTTTGCTGCCCCTACTCCCATCATCAACCCCATTGTG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGAGAAGAAATGGCAAAAGAATCCTACGATCAAGCCATTGCTGCACTCGAGAAACTCCTCAG....................................................................................................................................................................................................................................................................................................................................................................................CGAGAAAGCAGAACTTGGACCAGTTGCTGCAGCAAGAGTTGACCAGATCACTGCTGAATTGAAATCAGCAGACGGCGGCAAGGCATTCGACCCTGTTGAGCACATGAAAGCTGGCTNTATTCATTTCAAGACTGAGAAATATGA..................................................................................................CACANACCCAGCCTTATATGGTGAGCTAGCAAAGGGCCAGAGCCCTAAA....................................................................................GTCATGGTTTTCGCGTGCTCTGACTCACGAGTCTGCCCATCCCATGTCCTCAACTT-CAACCTGGTGAGGCATTCA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0236E02-u8qcS/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E355616" ref_strand="+" ref_description="SGN-E355616 [cLHT-1-I20]">
      <seq>tgcttccattaacaattgcctcactctctcccctgctcaagcttcccttaagaaacctactcgtcccgttgccttcgcaaggcttggcaactcttcttcttcttcttcttctattccaagtctcatcagaaacgagcccgtctttgctgcccctactcccatcatcaaccccattgtgagagaagaaatggcaaaagaatcctacgatcaggccattgctgcactcgagaaactcctcagcgagaaagcagaacttggaccagttgctgcagcaagagttgatcagatcactgctgaattgaaatcagcagatggcggcaaggcattcgaccctgttgagcacatgaaagctggctttattcatttcaagactgagaaatatgatacaaacc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0236E02-u8qcS/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0236E02.1" temp_strand="+" temp_description="C02HBa0236E02.1  AC215430.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0236E02 sequenced_by:kribb upload_account_name:korea">
        <position start="14708" stop="17260"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="15008" g_stop="15182" g_length="175"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="178" r_length="178" r_score="0.960"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="15183" i_stop="16379" i_length="1197">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.971" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="16380" g_stop="16441" g_length="62"/>
          <reference_exon_boundary r_type="cDNA" r_start="179" r_stop="240" r_length="62" r_score="0.984"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="16442" i_stop="16813" i_length="372">
            <donor d_prob="0.999" d_score="0.98"/>
            <acceptor a_prob="1.000" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="16814" g_stop="16957" g_length="144"/>
          <reference_exon_boundary r_type="cDNA" r_start="241" r_stop="384" r_length="144" r_score="0.986"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="16958" i_stop="17055" i_length="98">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="17056" g_stop="17063" g_length="8"/>
          <reference_exon_boundary r_type="cDNA" r_start="385" r_stop="392" r_length="8" r_score="0.875"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0236E02.1" gen_strand="+" ref_id="SGN-E355616" ref_strand="+">
        <total_alignment_score>0.974</total_alignment_score>
        <cumulative_length_of_scored_exons>389</cumulative_length_of_scored_exons>
        <coverage percentage="0.992" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0236E02.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E355616" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="15008" e_stop="15182"/>
          <exon e_start="16380" e_stop="16441"/>
          <exon e_start="16814" e_stop="16957"/>
          <exon e_start="17056" e_stop="17063"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGCTTCCATTAACAATTGCCTTACTCTCTCCCCTGCTCAAGCTTCCCTTAAGAAACCTACTCGTCCCGTTGCCTTCGCAAGGCTTGGCAA--C-TCTTCTTCTTCTTCTTCTATTCCAAGTCTCATCAGAAACGAGCCCGTCTTTGCTGCCCCTACTCCCATCATCAACCCCATTGTGGTACGAATTTTTAACTTACATCACTGTATTTTAATCTGTTATAACAAGTTATTTATATTTGACGTTACTTAATTTATTTTTTAAGCAAGACATTTTTTTTGTCTTATCGTATTTTTTGTAACGACTTGTGTCCATGCATGCTAGTTCACGTGAAAATTCAATATTGGCATAGTTCTAAACTTTAGTTTCTAACCACCTTTATTATTGGTATTGTTATTTTTGGCCATGAATCTCCTGAAGTTAGGTGAATTGATCATGTCGCTCTAAATTGTACACGTCTATTGCGTGTACTCAATGACATATAATATATTATTGCAATCCTAAAATAAGTGTTATTTTAATTTATTTTGAACTCATTAAAATAAATATGATATTTTACTGAGTTACTTATATTTATTACTTTGATTTTTTTGAGTACTAATTTGTATTTTGAAACTTTTAAGATGACGAGAGGGTGGAAATAACAAATTAAATTTGAAAATGAACCAAAATAGAGGTGGCAATTAGGTAGAGGTTCTCGCAAAATGAATATTAAATATGTAGGGCCGTATTGTGAATTATGTGGATAATGTTTTTGCTTTCTATTTTTTTTTAAAAAAAATAATTATTACTTACAATAATCCAACGGGTATCCTCGTATGTGCCCATCCTACAAGTGATAAAATGATAAGTACCAGTCTACCATCAAGTTTGTAGGATAGAAACTATTTAGTATACATTGTTTTTGTCTTAATTTCTAGTTTTGGTATCCATCTAAATCGATACTCCATTATGTTAATTATTTCATTTCTTTCTTTTGACATCTACATCACTTTTTAATGTGGTTACCACTTGCTATAATCATACTTCACTTAGCATTTTATTTGAACTTAGTGAAAGTGAAATTTTTCCTAATAATTGGTCTAAAAATTGAAGAAGATTAAAGCCAAGAAATTGAGTTCTTCCTTCTTTCTTCCAACTTTGAAAGTACCGATAGATACTATCATATAAAAAGAAGAGGTGGTCTGACTAACTCAATGAAGTGAATTTTTCAAAAACATGCTCAGAAAAATGAGAAAAATGGAGTTTTTGAAAAGAAAAATTAACAGATATTTAAAGATAAATTTTTGAAATTTGGTTCAAAATTTATGGTCAAATATTAACTTATATTTATATATATACCTCTTCTAAAATGCTAATGAGAATTAGAATTTGCAGAGAGAAGAAATGGCAAAAGAATCCTACGATCAAGCCATTGCTGCACTCGAGAAACTCCTCAGGTTTGTACTCTCTCTACGACTCTACCTTCTAAATCACACTACTTTTTTCTCGATCAAGTGGGGCCCAAAAAATATACATACACCCACACATACGTAGACAAAAAAAATGTTAAAATTTGCGAATATGCAGAGAAAACATAATATAATCATGCAATGTTTACTCGTAAAATTCAATTTCCCGGCAATGAACATGTTACTTGGTTTCGAGTTCTCCAGATCTGCATTAATTTTACCATTCTATCATCATTTTTTTACCCCATATCTGCATTAATTTATCATGGTAATGGTGCTCAAACCACAAATCTTTTTTTTTTCTACCTGAAATATTGCTTCAATAATAATAATGGTCTAAATTATTTTCTGCAATTACAGCGAGAAAGCAGAACTTGGACCAGTTGCTGCAGCAAGAGTTGACCAGATCACTGCTGAATTGAAATCAGCAGACGGCGGCAAGGCATTCGACCCTGTTGAGCACATGAAAGCTGGCTTTATTCATTTCAAGACTGAGAAATATGAGTAAGCAAATTCATTCAAATTAAAATTTCTGCATATTTGATGTTGTAACATTATTAGTGTCTGATAATTTTTCCTGTTTTCTATTTATGTACCAACAGCACAAACC</genome_strand>
        <mrna_strand>TGCTTCCATTAACAATTGCCTCACTCTCTCCCCTGCTCAAGCTTCCCTTAAGAAACCTACTCGTCCCGTTGCCTTCGCAAGGCTTGGCAACTCTTCTTCTTCTTCTTCTTCTATTCCAAGTCTCATCAGAAACGAGCCCGTCTTTGCTGCCCCTACTCCCATCATCAACCCCATTGTG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGAGAAGAAATGGCAAAAGAATCCTACGATCAGGCCATTGCTGCACTCGAGAAACTCCTCAG....................................................................................................................................................................................................................................................................................................................................................................................CGAGAAAGCAGAACTTGGACCAGTTGCTGCAGCAAGAGTTGATCAGATCACTGCTGAATTGAAATCAGCAGATGGCGGCAAGGCATTCGACCCTGTTGAGCACATGAAAGCTGGCTTTATTCATTTCAAGACTGAGAAATATGA..................................................................................................TACAAACC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0236E02-u8qcS/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E726959" ref_strand="+" ref_description="SGN-E726959 [LA13BC08]">
      <seq>gcttccattaacaattgccttactctctcccctgctcaagcttcccttaagaaacctactcgtcccgttgccttcgcaaggcttggcaactcttcttcttcttcttctattccaagtctcatcagaaacgagcccgtctttgctgcccctactcccatcatcaaccccattgtgagagaagaaatggcaaaagaatcctacgatcaagccattgctgcactcgagaaactcctcagcgagaaagcagaacttggaccagttgctgcagcaagagttgaccagatcactgctgaattgaaatcagcagacggcggcaaggcattcgaccctgttgagcacatgaaagctggctttattcatttcaagactgagaaatatgacacaaacccagccttatatggtgagctagcaaagggccagagccctaagttcatggttttcgcgtgctctgactcacgagtctgcccatcccatgtcctcaacttccaacctggtgaggcattcatggttcgtaacatcgccaacatggtccctgcttatgacaaggtcaggtactctggagtaggagcagccattgaatacgccgttcttcatcttaaggtggagaacatcgttgtcattggccacagtgcttgtggaggtatcaaaggtctcatgtcactacctgaagatggtagtgaatcaactgcctttattgaggattgggtaaaaatttgtttacctgccaaggcaaaggttctggccgatcacggagggaaagaatttgcacatcaatgcacagcttgtgagaaagaagctgtgaacgtttcacttggaaatctgcttacgtatccattcgtgagagaaggattggtga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0236E02-u8qcS/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0236E02.1" temp_strand="+" temp_description="C02HBa0236E02.1  AC215430.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0236E02 sequenced_by:kribb upload_account_name:korea">
        <position start="14709" stop="18157"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="15009" g_stop="15182" g_length="174"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="174" r_length="174" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="15183" i_stop="16379" i_length="1197">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.971" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="16380" g_stop="16441" g_length="62"/>
          <reference_exon_boundary r_type="cDNA" r_start="175" r_stop="236" r_length="62" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="16442" i_stop="16813" i_length="372">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="16814" g_stop="16957" g_length="144"/>
          <reference_exon_boundary r_type="cDNA" r_start="237" r_stop="380" r_length="144" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="16958" i_stop="17055" i_length="98">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="17056" g_stop="17104" g_length="49"/>
          <reference_exon_boundary r_type="cDNA" r_start="381" r_stop="429" r_length="49" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="17105" i_stop="17188" i_length="84">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.961" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="17189" g_stop="17305" g_length="117"/>
          <reference_exon_boundary r_type="cDNA" r_start="430" r_stop="546" r_length="117" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="17306" i_stop="17390" i_length="85">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.979" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="17391" g_stop="17530" g_length="140"/>
          <reference_exon_boundary r_type="cDNA" r_start="547" r_stop="686" r_length="140" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="17531" i_stop="17607" i_length="77">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.948" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="17608" g_stop="17713" g_length="106"/>
          <reference_exon_boundary r_type="cDNA" r_start="687" r_stop="792" r_length="106" r_score="0.991"/>
        </exon>
        <intron i_serial="7">
          <gDNA_intron_boundary i_start="17714" i_stop="17793" i_length="80">
            <donor d_prob="1.000" d_score="0.98"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="8">
          <gDNA_exon_boundary g_start="17794" g_stop="17857" g_length="64"/>
          <reference_exon_boundary r_type="cDNA" r_start="793" r_stop="856" r_length="64" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0236E02.1" gen_strand="+" ref_id="SGN-E726959" ref_strand="+">
        <total_alignment_score>0.999</total_alignment_score>
        <cumulative_length_of_scored_exons>856</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0236E02.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E726959" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="15009" e_stop="15182"/>
          <exon e_start="16380" e_stop="16441"/>
          <exon e_start="16814" e_stop="16957"/>
          <exon e_start="17056" e_stop="17104"/>
          <exon e_start="17189" e_stop="17305"/>
          <exon e_start="17391" e_stop="17530"/>
          <exon e_start="17608" e_stop="17713"/>
          <exon e_start="17794" e_stop="17857"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCTTCCATTAACAATTGCCTTACTCTCTCCCCTGCTCAAGCTTCCCTTAAGAAACCTACTCGTCCCGTTGCCTTCGCAAGGCTTGGCAACTCTTCTTCTTCTTCTTCTATTCCAAGTCTCATCAGAAACGAGCCCGTCTTTGCTGCCCCTACTCCCATCATCAACCCCATTGTGGTACGAATTTTTAACTTACATCACTGTATTTTAATCTGTTATAACAAGTTATTTATATTTGACGTTACTTAATTTATTTTTTAAGCAAGACATTTTTTTTGTCTTATCGTATTTTTTGTAACGACTTGTGTCCATGCATGCTAGTTCACGTGAAAATTCAATATTGGCATAGTTCTAAACTTTAGTTTCTAACCACCTTTATTATTGGTATTGTTATTTTTGGCCATGAATCTCCTGAAGTTAGGTGAATTGATCATGTCGCTCTAAATTGTACACGTCTATTGCGTGTACTCAATGACATATAATATATTATTGCAATCCTAAAATAAGTGTTATTTTAATTTATTTTGAACTCATTAAAATAAATATGATATTTTACTGAGTTACTTATATTTATTACTTTGATTTTTTTGAGTACTAATTTGTATTTTGAAACTTTTAAGATGACGAGAGGGTGGAAATAACAAATTAAATTTGAAAATGAACCAAAATAGAGGTGGCAATTAGGTAGAGGTTCTCGCAAAATGAATATTAAATATGTAGGGCCGTATTGTGAATTATGTGGATAATGTTTTTGCTTTCTATTTTTTTTTAAAAAAAATAATTATTACTTACAATAATCCAACGGGTATCCTCGTATGTGCCCATCCTACAAGTGATAAAATGATAAGTACCAGTCTACCATCAAGTTTGTAGGATAGAAACTATTTAGTATACATTGTTTTTGTCTTAATTTCTAGTTTTGGTATCCATCTAAATCGATACTCCATTATGTTAATTATTTCATTTCTTTCTTTTGACATCTACATCACTTTTTAATGTGGTTACCACTTGCTATAATCATACTTCACTTAGCATTTTATTTGAACTTAGTGAAAGTGAAATTTTTCCTAATAATTGGTCTAAAAATTGAAGAAGATTAAAGCCAAGAAATTGAGTTCTTCCTTCTTTCTTCCAACTTTGAAAGTACCGATAGATACTATCATATAAAAAGAAGAGGTGGTCTGACTAACTCAATGAAGTGAATTTTTCAAAAACATGCTCAGAAAAATGAGAAAAATGGAGTTTTTGAAAAGAAAAATTAACAGATATTTAAAGATAAATTTTTGAAATTTGGTTCAAAATTTATGGTCAAATATTAACTTATATTTATATATATACCTCTTCTAAAATGCTAATGAGAATTAGAATTTGCAGAGAGAAGAAATGGCAAAAGAATCCTACGATCAAGCCATTGCTGCACTCGAGAAACTCCTCAGGTTTGTACTCTCTCTACGACTCTACCTTCTAAATCACACTACTTTTTTCTCGATCAAGTGGGGCCCAAAAAATATACATACACCCACACATACGTAGACAAAAAAAATGTTAAAATTTGCGAATATGCAGAGAAAACATAATATAATCATGCAATGTTTACTCGTAAAATTCAATTTCCCGGCAATGAACATGTTACTTGGTTTCGAGTTCTCCAGATCTGCATTAATTTTACCATTCTATCATCATTTTTTTACCCCATATCTGCATTAATTTATCATGGTAATGGTGCTCAAACCACAAATCTTTTTTTTTTCTACCTGAAATATTGCTTCAATAATAATAATGGTCTAAATTATTTTCTGCAATTACAGCGAGAAAGCAGAACTTGGACCAGTTGCTGCAGCAAGAGTTGACCAGATCACTGCTGAATTGAAATCAGCAGACGGCGGCAAGGCATTCGACCCTGTTGAGCACATGAAAGCTGGCTTTATTCATTTCAAGACTGAGAAATATGAGTAAGCAAATTCATTCAAATTAAAATTTCTGCATATTTGATGTTGTAACATTATTAGTGTCTGATAATTTTTCCTGTTTTCTATTTATGTACCAACAGCACAAACCCAGCCTTATATGGTGAGCTAGCAAAGGGCCAGAGCCCTAAGGTACAAATTCCTTGTTAATTTGTTGTCTAATTTTATGATTTGTACGGTTTCTGATGAGTTCTATTGTCCTAAATGTGTAAACAGTTCATGGTTTTCGCGTGCTCTGACTCACGAGTCTGCCCATCCCATGTCCTCAACTTCCAACCTGGTGAGGCATTCATGGTTCGTAACATCGCCAACATGGTCCCTGCTTATGACAAGGTCAGTTACAAATCGATCAACTAGTCGATTATTTCGCTCTGGAATTGTGTTTTTTAAAAATAAAGATGGAATTGAATTTTTACAGGTCAGGTACTCTGGAGTAGGAGCAGCCATTGAATACGCCGTTCTTCATCTTAAGGTGGAGAACATCGTTGTCATTGGCCACAGTGCTTGTGGAGGTATCAAAGGTCTCATGTCACTACCTGAAGATGGTAGTGAATCAACGTACGTCACTCTATAAATCTATTCATTCAAAACACTTATCCTTAACAGATGATTGATTAATAATCTAATATACGCAGTGCCTTTATTGAGGATTGGGTAAAAATTTGTTTACCTGCCAAGGCAAAGGTTCTGGCCGATCACGGAGGGAAAGAATTTGCACATCAATGCACAGCTTGTGAGAAGGTAAAATTCAAATTTAACTTTTTGATTATCAATTAATTACATATATAGCAGTATTTTATAATTGATGAAAAATGTTGCAGGAAGCTGTGAACGTTTCACTTGGAAATCTGCTTACGTATCCATTCGTGAGAGAAGGATTGGTGA</genome_strand>
        <mrna_strand>GCTTCCATTAACAATTGCCTTACTCTCTCCCCTGCTCAAGCTTCCCTTAAGAAACCTACTCGTCCCGTTGCCTTCGCAAGGCTTGGCAACTCTTCTTCTTCTTCTTCTATTCCAAGTCTCATCAGAAACGAGCCCGTCTTTGCTGCCCCTACTCCCATCATCAACCCCATTGTG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGAGAAGAAATGGCAAAAGAATCCTACGATCAAGCCATTGCTGCACTCGAGAAACTCCTCAG....................................................................................................................................................................................................................................................................................................................................................................................CGAGAAAGCAGAACTTGGACCAGTTGCTGCAGCAAGAGTTGACCAGATCACTGCTGAATTGAAATCAGCAGACGGCGGCAAGGCATTCGACCCTGTTGAGCACATGAAAGCTGGCTTTATTCATTTCAAGACTGAGAAATATGA..................................................................................................CACAAACCCAGCCTTATATGGTGAGCTAGCAAAGGGCCAGAGCCCTAAG....................................................................................TTCATGGTTTTCGCGTGCTCTGACTCACGAGTCTGCCCATCCCATGTCCTCAACTTCCAACCTGGTGAGGCATTCATGGTTCGTAACATCGCCAACATGGTCCCTGCTTATGACAAG.....................................................................................GTCAGGTACTCTGGAGTAGGAGCAGCCATTGAATACGCCGTTCTTCATCTTAAGGTGGAGAACATCGTTGTCATTGGCCACAGTGCTTGTGGAGGTATCAAAGGTCTCATGTCACTACCTGAAGATGGTAGTGAATCAAC.............................................................................TGCCTTTATTGAGGATTGGGTAAAAATTTGTTTACCTGCCAAGGCAAAGGTTCTGGCCGATCACGGAGGGAAAGAATTTGCACATCAATGCACAGCTTGTGAGAAA................................................................................GAAGCTGTGAACGTTTCACTTGGAAATCTGCTTACGTATCCATTCGTGAGAGAAGGATTGGTGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0236E02-u8qcS/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E726107" ref_strand="+" ref_description="SGN-E726107 [LA10BD05]">
      <seq>gcttccattaacaattgccttactctctcccctgctcaagcttcccttaagaaacctactcgtcccgttgccttcgcaaggcttggcaactcttcttcttcttcttctattccaagtctcatcagaaacgagcccgtctttgctgcccctactcccatcatcaaccccattgtgagagaagaaatggcaaaagaatcctacgatcaagccattgctgcactcgagaaactcctcagcgagaaagcagaacttggaccagttgctgcagcaagagttgaccagatcactgctgaattgaaatcagcagacggcggcaaggcattcgaccctgttgagcacatgaaagctggctttattcatttcaagactgagaaatatgacacaaacccagccttatatggtgagctagcaaagggccagagccctaagttcatggttttcgcgtgctctgactcacgagtctgcccatcccatgtcctcaacttccacctggtgaggcattcatggttcgtacatcgccacatggtcctgctatga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0236E02-u8qcS/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0236E02.1" temp_strand="+" temp_description="C02HBa0236E02.1  AC215430.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0236E02 sequenced_by:kribb upload_account_name:korea">
        <position start="14709" stop="17601"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="15009" g_stop="15182" g_length="174"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="174" r_length="174" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="15183" i_stop="16379" i_length="1197">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.971" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="16380" g_stop="16441" g_length="62"/>
          <reference_exon_boundary r_type="cDNA" r_start="175" r_stop="236" r_length="62" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="16442" i_stop="16813" i_length="372">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="16814" g_stop="16957" g_length="144"/>
          <reference_exon_boundary r_type="cDNA" r_start="237" r_stop="380" r_length="144" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="16958" i_stop="17055" i_length="98">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="17056" g_stop="17104" g_length="49"/>
          <reference_exon_boundary r_type="cDNA" r_start="381" r_stop="429" r_length="49" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="17105" i_stop="17188" i_length="84">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.961" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="17189" g_stop="17301" g_length="113"/>
          <reference_exon_boundary r_type="cDNA" r_start="430" r_stop="537" r_length="108" r_score="0.956"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0236E02.1" gen_strand="+" ref_id="SGN-E726107" ref_strand="+">
        <total_alignment_score>0.990</total_alignment_score>
        <cumulative_length_of_scored_exons>542</cumulative_length_of_scored_exons>
        <coverage percentage="1.009" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0236E02.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E726107" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="15009" e_stop="15182"/>
          <exon e_start="16380" e_stop="16441"/>
          <exon e_start="16814" e_stop="16957"/>
          <exon e_start="17056" e_stop="17104"/>
          <exon e_start="17189" e_stop="17301"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCTTCCATTAACAATTGCCTTACTCTCTCCCCTGCTCAAGCTTCCCTTAAGAAACCTACTCGTCCCGTTGCCTTCGCAAGGCTTGGCAACTCTTCTTCTTCTTCTTCTATTCCAAGTCTCATCAGAAACGAGCCCGTCTTTGCTGCCCCTACTCCCATCATCAACCCCATTGTGGTACGAATTTTTAACTTACATCACTGTATTTTAATCTGTTATAACAAGTTATTTATATTTGACGTTACTTAATTTATTTTTTAAGCAAGACATTTTTTTTGTCTTATCGTATTTTTTGTAACGACTTGTGTCCATGCATGCTAGTTCACGTGAAAATTCAATATTGGCATAGTTCTAAACTTTAGTTTCTAACCACCTTTATTATTGGTATTGTTATTTTTGGCCATGAATCTCCTGAAGTTAGGTGAATTGATCATGTCGCTCTAAATTGTACACGTCTATTGCGTGTACTCAATGACATATAATATATTATTGCAATCCTAAAATAAGTGTTATTTTAATTTATTTTGAACTCATTAAAATAAATATGATATTTTACTGAGTTACTTATATTTATTACTTTGATTTTTTTGAGTACTAATTTGTATTTTGAAACTTTTAAGATGACGAGAGGGTGGAAATAACAAATTAAATTTGAAAATGAACCAAAATAGAGGTGGCAATTAGGTAGAGGTTCTCGCAAAATGAATATTAAATATGTAGGGCCGTATTGTGAATTATGTGGATAATGTTTTTGCTTTCTATTTTTTTTTAAAAAAAATAATTATTACTTACAATAATCCAACGGGTATCCTCGTATGTGCCCATCCTACAAGTGATAAAATGATAAGTACCAGTCTACCATCAAGTTTGTAGGATAGAAACTATTTAGTATACATTGTTTTTGTCTTAATTTCTAGTTTTGGTATCCATCTAAATCGATACTCCATTATGTTAATTATTTCATTTCTTTCTTTTGACATCTACATCACTTTTTAATGTGGTTACCACTTGCTATAATCATACTTCACTTAGCATTTTATTTGAACTTAGTGAAAGTGAAATTTTTCCTAATAATTGGTCTAAAAATTGAAGAAGATTAAAGCCAAGAAATTGAGTTCTTCCTTCTTTCTTCCAACTTTGAAAGTACCGATAGATACTATCATATAAAAAGAAGAGGTGGTCTGACTAACTCAATGAAGTGAATTTTTCAAAAACATGCTCAGAAAAATGAGAAAAATGGAGTTTTTGAAAAGAAAAATTAACAGATATTTAAAGATAAATTTTTGAAATTTGGTTCAAAATTTATGGTCAAATATTAACTTATATTTATATATATACCTCTTCTAAAATGCTAATGAGAATTAGAATTTGCAGAGAGAAGAAATGGCAAAAGAATCCTACGATCAAGCCATTGCTGCACTCGAGAAACTCCTCAGGTTTGTACTCTCTCTACGACTCTACCTTCTAAATCACACTACTTTTTTCTCGATCAAGTGGGGCCCAAAAAATATACATACACCCACACATACGTAGACAAAAAAAATGTTAAAATTTGCGAATATGCAGAGAAAACATAATATAATCATGCAATGTTTACTCGTAAAATTCAATTTCCCGGCAATGAACATGTTACTTGGTTTCGAGTTCTCCAGATCTGCATTAATTTTACCATTCTATCATCATTTTTTTACCCCATATCTGCATTAATTTATCATGGTAATGGTGCTCAAACCACAAATCTTTTTTTTTTCTACCTGAAATATTGCTTCAATAATAATAATGGTCTAAATTATTTTCTGCAATTACAGCGAGAAAGCAGAACTTGGACCAGTTGCTGCAGCAAGAGTTGACCAGATCACTGCTGAATTGAAATCAGCAGACGGCGGCAAGGCATTCGACCCTGTTGAGCACATGAAAGCTGGCTTTATTCATTTCAAGACTGAGAAATATGAGTAAGCAAATTCATTCAAATTAAAATTTCTGCATATTTGATGTTGTAACATTATTAGTGTCTGATAATTTTTCCTGTTTTCTATTTATGTACCAACAGCACAAACCCAGCCTTATATGGTGAGCTAGCAAAGGGCCAGAGCCCTAAGGTACAAATTCCTTGTTAATTTGTTGTCTAATTTTATGATTTGTACGGTTTCTGATGAGTTCTATTGTCCTAAATGTGTAAACAGTTCATGGTTTTCGCGTGCTCTGACTCACGAGTCTGCCCATCCCATGTCCTCAACTTCCAACCTGGTGAGGCATTCATGGTTCGTAACATCGCCAACATGGTCCCTGCTTATGA</genome_strand>
        <mrna_strand>GCTTCCATTAACAATTGCCTTACTCTCTCCCCTGCTCAAGCTTCCCTTAAGAAACCTACTCGTCCCGTTGCCTTCGCAAGGCTTGGCAACTCTTCTTCTTCTTCTTCTATTCCAAGTCTCATCAGAAACGAGCCCGTCTTTGCTGCCCCTACTCCCATCATCAACCCCATTGTG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGAGAAGAAATGGCAAAAGAATCCTACGATCAAGCCATTGCTGCACTCGAGAAACTCCTCAG....................................................................................................................................................................................................................................................................................................................................................................................CGAGAAAGCAGAACTTGGACCAGTTGCTGCAGCAAGAGTTGACCAGATCACTGCTGAATTGAAATCAGCAGACGGCGGCAAGGCATTCGACCCTGTTGAGCACATGAAAGCTGGCTTTATTCATTTCAAGACTGAGAAATATGA..................................................................................................CACAAACCCAGCCTTATATGGTGAGCTAGCAAAGGGCCAGAGCCCTAAG....................................................................................TTCATGGTTTTCGCGTGCTCTGACTCACGAGTCTGCCCATCCCATGTCCTCAACTTCC-ACCTGGTGAGGCATTCATGGTTCGT-ACATCGCC-ACATGGT-CCTGC-TATGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0236E02-u8qcS/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E731487" ref_strand="+" ref_description="SGN-E731487 [LA27BB07]">
      <seq>ttccattaacaattgccttactctctcccctgctcaagcttcccttaagaaacctactcgtcccgttgccttcgcaaggcttggcaactcttcttcttcttcttctattccaagtctcatcagaaacgagcccgtctttgctgcccctactcccatcatcaaccccattgtgagagaagaaatggcaaaagaatcctacgatcaagccattgctgcactcgagaaactcctcagcgagaaagcagaacttggaccagttgctgcagcaagagttgaccagatcactgctgaattgaaatcagcagacggcggcaaggcattcgaccctgttgagcacatgaaagctggctttattcatttcaagactgagaaatatgacacaaacccagccttatatggtgagctagcaaagggccagagccctaagttcatggttttcgcgtgctctgactcacgagtctgcccatcccatgtcctcaacttccaacctggtgaggcattcatggttcgtaacatcgccaacatggtccctgcttatgacaaggtcaggtactctggagtaggagcagccattgaatacgccgttcttcatcttaaggtggagaacatcgttgtcattggccacagtgcttgtggaggtatcaaaggtctcatgtcactacctgaagatggtagtgaatcaactgcctttattgaggattgggtaaaaatttgtttacctgccaaggcaaaggttctggccgatcacggagggaaagaatttgcacatcaatgcacagcttgtgagaaagaagctgtgaacgtttcacttggaaatctgcttacgtatccatt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0236E02-u8qcS/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0236E02.1" temp_strand="+" temp_description="C02HBa0236E02.1  AC215430.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0236E02 sequenced_by:kribb upload_account_name:korea">
        <position start="14711" stop="18137"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="15011" g_stop="15182" g_length="172"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="172" r_length="172" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="15183" i_stop="16379" i_length="1197">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.971" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="16380" g_stop="16441" g_length="62"/>
          <reference_exon_boundary r_type="cDNA" r_start="173" r_stop="234" r_length="62" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="16442" i_stop="16813" i_length="372">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="16814" g_stop="16957" g_length="144"/>
          <reference_exon_boundary r_type="cDNA" r_start="235" r_stop="378" r_length="144" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="16958" i_stop="17055" i_length="98">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="17056" g_stop="17104" g_length="49"/>
          <reference_exon_boundary r_type="cDNA" r_start="379" r_stop="427" r_length="49" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="17105" i_stop="17188" i_length="84">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.961" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="17189" g_stop="17305" g_length="117"/>
          <reference_exon_boundary r_type="cDNA" r_start="428" r_stop="544" r_length="117" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="17306" i_stop="17390" i_length="85">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.979" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="17391" g_stop="17530" g_length="140"/>
          <reference_exon_boundary r_type="cDNA" r_start="545" r_stop="684" r_length="140" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="17531" i_stop="17607" i_length="77">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.948" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="17608" g_stop="17713" g_length="106"/>
          <reference_exon_boundary r_type="cDNA" r_start="685" r_stop="790" r_length="106" r_score="0.991"/>
        </exon>
        <intron i_serial="7">
          <gDNA_intron_boundary i_start="17714" i_stop="17793" i_length="80">
            <donor d_prob="1.000" d_score="0.98"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="8">
          <gDNA_exon_boundary g_start="17794" g_stop="17837" g_length="44"/>
          <reference_exon_boundary r_type="cDNA" r_start="791" r_stop="834" r_length="44" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0236E02.1" gen_strand="+" ref_id="SGN-E731487" ref_strand="+">
        <total_alignment_score>0.999</total_alignment_score>
        <cumulative_length_of_scored_exons>834</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0236E02.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E731487" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="15011" e_stop="15182"/>
          <exon e_start="16380" e_stop="16441"/>
          <exon e_start="16814" e_stop="16957"/>
          <exon e_start="17056" e_stop="17104"/>
          <exon e_start="17189" e_stop="17305"/>
          <exon e_start="17391" e_stop="17530"/>
          <exon e_start="17608" e_stop="17713"/>
          <exon e_start="17794" e_stop="17837"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTCCATTAACAATTGCCTTACTCTCTCCCCTGCTCAAGCTTCCCTTAAGAAACCTACTCGTCCCGTTGCCTTCGCAAGGCTTGGCAACTCTTCTTCTTCTTCTTCTATTCCAAGTCTCATCAGAAACGAGCCCGTCTTTGCTGCCCCTACTCCCATCATCAACCCCATTGTGGTACGAATTTTTAACTTACATCACTGTATTTTAATCTGTTATAACAAGTTATTTATATTTGACGTTACTTAATTTATTTTTTAAGCAAGACATTTTTTTTGTCTTATCGTATTTTTTGTAACGACTTGTGTCCATGCATGCTAGTTCACGTGAAAATTCAATATTGGCATAGTTCTAAACTTTAGTTTCTAACCACCTTTATTATTGGTATTGTTATTTTTGGCCATGAATCTCCTGAAGTTAGGTGAATTGATCATGTCGCTCTAAATTGTACACGTCTATTGCGTGTACTCAATGACATATAATATATTATTGCAATCCTAAAATAAGTGTTATTTTAATTTATTTTGAACTCATTAAAATAAATATGATATTTTACTGAGTTACTTATATTTATTACTTTGATTTTTTTGAGTACTAATTTGTATTTTGAAACTTTTAAGATGACGAGAGGGTGGAAATAACAAATTAAATTTGAAAATGAACCAAAATAGAGGTGGCAATTAGGTAGAGGTTCTCGCAAAATGAATATTAAATATGTAGGGCCGTATTGTGAATTATGTGGATAATGTTTTTGCTTTCTATTTTTTTTTAAAAAAAATAATTATTACTTACAATAATCCAACGGGTATCCTCGTATGTGCCCATCCTACAAGTGATAAAATGATAAGTACCAGTCTACCATCAAGTTTGTAGGATAGAAACTATTTAGTATACATTGTTTTTGTCTTAATTTCTAGTTTTGGTATCCATCTAAATCGATACTCCATTATGTTAATTATTTCATTTCTTTCTTTTGACATCTACATCACTTTTTAATGTGGTTACCACTTGCTATAATCATACTTCACTTAGCATTTTATTTGAACTTAGTGAAAGTGAAATTTTTCCTAATAATTGGTCTAAAAATTGAAGAAGATTAAAGCCAAGAAATTGAGTTCTTCCTTCTTTCTTCCAACTTTGAAAGTACCGATAGATACTATCATATAAAAAGAAGAGGTGGTCTGACTAACTCAATGAAGTGAATTTTTCAAAAACATGCTCAGAAAAATGAGAAAAATGGAGTTTTTGAAAAGAAAAATTAACAGATATTTAAAGATAAATTTTTGAAATTTGGTTCAAAATTTATGGTCAAATATTAACTTATATTTATATATATACCTCTTCTAAAATGCTAATGAGAATTAGAATTTGCAGAGAGAAGAAATGGCAAAAGAATCCTACGATCAAGCCATTGCTGCACTCGAGAAACTCCTCAGGTTTGTACTCTCTCTACGACTCTACCTTCTAAATCACACTACTTTTTTCTCGATCAAGTGGGGCCCAAAAAATATACATACACCCACACATACGTAGACAAAAAAAATGTTAAAATTTGCGAATATGCAGAGAAAACATAATATAATCATGCAATGTTTACTCGTAAAATTCAATTTCCCGGCAATGAACATGTTACTTGGTTTCGAGTTCTCCAGATCTGCATTAATTTTACCATTCTATCATCATTTTTTTACCCCATATCTGCATTAATTTATCATGGTAATGGTGCTCAAACCACAAATCTTTTTTTTTTCTACCTGAAATATTGCTTCAATAATAATAATGGTCTAAATTATTTTCTGCAATTACAGCGAGAAAGCAGAACTTGGACCAGTTGCTGCAGCAAGAGTTGACCAGATCACTGCTGAATTGAAATCAGCAGACGGCGGCAAGGCATTCGACCCTGTTGAGCACATGAAAGCTGGCTTTATTCATTTCAAGACTGAGAAATATGAGTAAGCAAATTCATTCAAATTAAAATTTCTGCATATTTGATGTTGTAACATTATTAGTGTCTGATAATTTTTCCTGTTTTCTATTTATGTACCAACAGCACAAACCCAGCCTTATATGGTGAGCTAGCAAAGGGCCAGAGCCCTAAGGTACAAATTCCTTGTTAATTTGTTGTCTAATTTTATGATTTGTACGGTTTCTGATGAGTTCTATTGTCCTAAATGTGTAAACAGTTCATGGTTTTCGCGTGCTCTGACTCACGAGTCTGCCCATCCCATGTCCTCAACTTCCAACCTGGTGAGGCATTCATGGTTCGTAACATCGCCAACATGGTCCCTGCTTATGACAAGGTCAGTTACAAATCGATCAACTAGTCGATTATTTCGCTCTGGAATTGTGTTTTTTAAAAATAAAGATGGAATTGAATTTTTACAGGTCAGGTACTCTGGAGTAGGAGCAGCCATTGAATACGCCGTTCTTCATCTTAAGGTGGAGAACATCGTTGTCATTGGCCACAGTGCTTGTGGAGGTATCAAAGGTCTCATGTCACTACCTGAAGATGGTAGTGAATCAACGTACGTCACTCTATAAATCTATTCATTCAAAACACTTATCCTTAACAGATGATTGATTAATAATCTAATATACGCAGTGCCTTTATTGAGGATTGGGTAAAAATTTGTTTACCTGCCAAGGCAAAGGTTCTGGCCGATCACGGAGGGAAAGAATTTGCACATCAATGCACAGCTTGTGAGAAGGTAAAATTCAAATTTAACTTTTTGATTATCAATTAATTACATATATAGCAGTATTTTATAATTGATGAAAAATGTTGCAGGAAGCTGTGAACGTTTCACTTGGAAATCTGCTTACGTATCCATT</genome_strand>
        <mrna_strand>TTCCATTAACAATTGCCTTACTCTCTCCCCTGCTCAAGCTTCCCTTAAGAAACCTACTCGTCCCGTTGCCTTCGCAAGGCTTGGCAACTCTTCTTCTTCTTCTTCTATTCCAAGTCTCATCAGAAACGAGCCCGTCTTTGCTGCCCCTACTCCCATCATCAACCCCATTGTG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGAGAAGAAATGGCAAAAGAATCCTACGATCAAGCCATTGCTGCACTCGAGAAACTCCTCAG....................................................................................................................................................................................................................................................................................................................................................................................CGAGAAAGCAGAACTTGGACCAGTTGCTGCAGCAAGAGTTGACCAGATCACTGCTGAATTGAAATCAGCAGACGGCGGCAAGGCATTCGACCCTGTTGAGCACATGAAAGCTGGCTTTATTCATTTCAAGACTGAGAAATATGA..................................................................................................CACAAACCCAGCCTTATATGGTGAGCTAGCAAAGGGCCAGAGCCCTAAG....................................................................................TTCATGGTTTTCGCGTGCTCTGACTCACGAGTCTGCCCATCCCATGTCCTCAACTTCCAACCTGGTGAGGCATTCATGGTTCGTAACATCGCCAACATGGTCCCTGCTTATGACAAG.....................................................................................GTCAGGTACTCTGGAGTAGGAGCAGCCATTGAATACGCCGTTCTTCATCTTAAGGTGGAGAACATCGTTGTCATTGGCCACAGTGCTTGTGGAGGTATCAAAGGTCTCATGTCACTACCTGAAGATGGTAGTGAATCAAC.............................................................................TGCCTTTATTGAGGATTGGGTAAAAATTTGTTTACCTGCCAAGGCAAAGGTTCTGGCCGATCACGGAGGGAAAGAATTTGCACATCAATGCACAGCTTGTGAGAAA................................................................................GAAGCTGTGAACGTTTCACTTGGAAATCTGCTTACGTATCCATT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0236E02-u8qcS/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E740756" ref_strand="+" ref_description="SGN-E740756 [LC22DA07]">
      <seq>cattaacaattgccttactctctcccctgctcaagcttcccttaagaaacctactcgtcccgttgccttcgcaaggcttggcaactcttcttcttcttcttctattccaagtctcatcagaaacgagcccgtctttgctgcccctactcccatcatcaaccccattgtgagagaagaaatggcaaaagaatcctacgatcaagccattgctgcactcgagaaactcctcagcgagaaagcagaacttggaccagttgctgcagcaagagttgaccagatcactgctgaattgaaatcagcagacggcggcaaggcattcgaccctgttgagcacatgaaagctggctttattcatttcaagactgagaaatatgacacaaacccagccttatatggtgagctagcaaagggccagagccctaagttcatggttttcgcgtgctctgactcacgagtctgcccatcccatgtcctcaacttccaacctggtgaggcattcatggttcgtaacatcgccaacatggtccctgcttatgacaaggtcaggtactctggagtaggagcagccattgaatacgccgttcttcatcttaaggtggagaacatcgttgtcattggccacagtgcttgtggaggtatcaaaggtctcatgtcactacctgaagatggtagtgaatcaactgcctttattgaggattgggtaaaaatttgtttacctgccaaggcaaaggttctggccgatcacggagggaaagaatttgcacatcaatgcacagcttgtgagaaggaagctgtgaacgtttcacttggaaatctgcttacgtatccatt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0236E02-u8qcS/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0236E02.1" temp_strand="+" temp_description="C02HBa0236E02.1  AC215430.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0236E02 sequenced_by:kribb upload_account_name:korea">
        <position start="14714" stop="18137"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="15014" g_stop="15182" g_length="169"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="169" r_length="169" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="15183" i_stop="16379" i_length="1197">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.971" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="16380" g_stop="16441" g_length="62"/>
          <reference_exon_boundary r_type="cDNA" r_start="170" r_stop="231" r_length="62" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="16442" i_stop="16813" i_length="372">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="16814" g_stop="16957" g_length="144"/>
          <reference_exon_boundary r_type="cDNA" r_start="232" r_stop="375" r_length="144" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="16958" i_stop="17055" i_length="98">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="17056" g_stop="17104" g_length="49"/>
          <reference_exon_boundary r_type="cDNA" r_start="376" r_stop="424" r_length="49" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="17105" i_stop="17188" i_length="84">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.961" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="17189" g_stop="17305" g_length="117"/>
          <reference_exon_boundary r_type="cDNA" r_start="425" r_stop="541" r_length="117" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="17306" i_stop="17390" i_length="85">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.979" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="17391" g_stop="17530" g_length="140"/>
          <reference_exon_boundary r_type="cDNA" r_start="542" r_stop="681" r_length="140" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="17531" i_stop="17607" i_length="77">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.948" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="17608" g_stop="17713" g_length="106"/>
          <reference_exon_boundary r_type="cDNA" r_start="682" r_stop="787" r_length="106" r_score="1.000"/>
        </exon>
        <intron i_serial="7">
          <gDNA_intron_boundary i_start="17714" i_stop="17793" i_length="80">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="8">
          <gDNA_exon_boundary g_start="17794" g_stop="17837" g_length="44"/>
          <reference_exon_boundary r_type="cDNA" r_start="788" r_stop="831" r_length="44" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0236E02.1" gen_strand="+" ref_id="SGN-E740756" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>831</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0236E02.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E740756" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="15014" e_stop="15182"/>
          <exon e_start="16380" e_stop="16441"/>
          <exon e_start="16814" e_stop="16957"/>
          <exon e_start="17056" e_stop="17104"/>
          <exon e_start="17189" e_stop="17305"/>
          <exon e_start="17391" e_stop="17530"/>
          <exon e_start="17608" e_stop="17713"/>
          <exon e_start="17794" e_stop="17837"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CATTAACAATTGCCTTACTCTCTCCCCTGCTCAAGCTTCCCTTAAGAAACCTACTCGTCCCGTTGCCTTCGCAAGGCTTGGCAACTCTTCTTCTTCTTCTTCTATTCCAAGTCTCATCAGAAACGAGCCCGTCTTTGCTGCCCCTACTCCCATCATCAACCCCATTGTGGTACGAATTTTTAACTTACATCACTGTATTTTAATCTGTTATAACAAGTTATTTATATTTGACGTTACTTAATTTATTTTTTAAGCAAGACATTTTTTTTGTCTTATCGTATTTTTTGTAACGACTTGTGTCCATGCATGCTAGTTCACGTGAAAATTCAATATTGGCATAGTTCTAAACTTTAGTTTCTAACCACCTTTATTATTGGTATTGTTATTTTTGGCCATGAATCTCCTGAAGTTAGGTGAATTGATCATGTCGCTCTAAATTGTACACGTCTATTGCGTGTACTCAATGACATATAATATATTATTGCAATCCTAAAATAAGTGTTATTTTAATTTATTTTGAACTCATTAAAATAAATATGATATTTTACTGAGTTACTTATATTTATTACTTTGATTTTTTTGAGTACTAATTTGTATTTTGAAACTTTTAAGATGACGAGAGGGTGGAAATAACAAATTAAATTTGAAAATGAACCAAAATAGAGGTGGCAATTAGGTAGAGGTTCTCGCAAAATGAATATTAAATATGTAGGGCCGTATTGTGAATTATGTGGATAATGTTTTTGCTTTCTATTTTTTTTTAAAAAAAATAATTATTACTTACAATAATCCAACGGGTATCCTCGTATGTGCCCATCCTACAAGTGATAAAATGATAAGTACCAGTCTACCATCAAGTTTGTAGGATAGAAACTATTTAGTATACATTGTTTTTGTCTTAATTTCTAGTTTTGGTATCCATCTAAATCGATACTCCATTATGTTAATTATTTCATTTCTTTCTTTTGACATCTACATCACTTTTTAATGTGGTTACCACTTGCTATAATCATACTTCACTTAGCATTTTATTTGAACTTAGTGAAAGTGAAATTTTTCCTAATAATTGGTCTAAAAATTGAAGAAGATTAAAGCCAAGAAATTGAGTTCTTCCTTCTTTCTTCCAACTTTGAAAGTACCGATAGATACTATCATATAAAAAGAAGAGGTGGTCTGACTAACTCAATGAAGTGAATTTTTCAAAAACATGCTCAGAAAAATGAGAAAAATGGAGTTTTTGAAAAGAAAAATTAACAGATATTTAAAGATAAATTTTTGAAATTTGGTTCAAAATTTATGGTCAAATATTAACTTATATTTATATATATACCTCTTCTAAAATGCTAATGAGAATTAGAATTTGCAGAGAGAAGAAATGGCAAAAGAATCCTACGATCAAGCCATTGCTGCACTCGAGAAACTCCTCAGGTTTGTACTCTCTCTACGACTCTACCTTCTAAATCACACTACTTTTTTCTCGATCAAGTGGGGCCCAAAAAATATACATACACCCACACATACGTAGACAAAAAAAATGTTAAAATTTGCGAATATGCAGAGAAAACATAATATAATCATGCAATGTTTACTCGTAAAATTCAATTTCCCGGCAATGAACATGTTACTTGGTTTCGAGTTCTCCAGATCTGCATTAATTTTACCATTCTATCATCATTTTTTTACCCCATATCTGCATTAATTTATCATGGTAATGGTGCTCAAACCACAAATCTTTTTTTTTTCTACCTGAAATATTGCTTCAATAATAATAATGGTCTAAATTATTTTCTGCAATTACAGCGAGAAAGCAGAACTTGGACCAGTTGCTGCAGCAAGAGTTGACCAGATCACTGCTGAATTGAAATCAGCAGACGGCGGCAAGGCATTCGACCCTGTTGAGCACATGAAAGCTGGCTTTATTCATTTCAAGACTGAGAAATATGAGTAAGCAAATTCATTCAAATTAAAATTTCTGCATATTTGATGTTGTAACATTATTAGTGTCTGATAATTTTTCCTGTTTTCTATTTATGTACCAACAGCACAAACCCAGCCTTATATGGTGAGCTAGCAAAGGGCCAGAGCCCTAAGGTACAAATTCCTTGTTAATTTGTTGTCTAATTTTATGATTTGTACGGTTTCTGATGAGTTCTATTGTCCTAAATGTGTAAACAGTTCATGGTTTTCGCGTGCTCTGACTCACGAGTCTGCCCATCCCATGTCCTCAACTTCCAACCTGGTGAGGCATTCATGGTTCGTAACATCGCCAACATGGTCCCTGCTTATGACAAGGTCAGTTACAAATCGATCAACTAGTCGATTATTTCGCTCTGGAATTGTGTTTTTTAAAAATAAAGATGGAATTGAATTTTTACAGGTCAGGTACTCTGGAGTAGGAGCAGCCATTGAATACGCCGTTCTTCATCTTAAGGTGGAGAACATCGTTGTCATTGGCCACAGTGCTTGTGGAGGTATCAAAGGTCTCATGTCACTACCTGAAGATGGTAGTGAATCAACGTACGTCACTCTATAAATCTATTCATTCAAAACACTTATCCTTAACAGATGATTGATTAATAATCTAATATACGCAGTGCCTTTATTGAGGATTGGGTAAAAATTTGTTTACCTGCCAAGGCAAAGGTTCTGGCCGATCACGGAGGGAAAGAATTTGCACATCAATGCACAGCTTGTGAGAAGGTAAAATTCAAATTTAACTTTTTGATTATCAATTAATTACATATATAGCAGTATTTTATAATTGATGAAAAATGTTGCAGGAAGCTGTGAACGTTTCACTTGGAAATCTGCTTACGTATCCATT</genome_strand>
        <mrna_strand>CATTAACAATTGCCTTACTCTCTCCCCTGCTCAAGCTTCCCTTAAGAAACCTACTCGTCCCGTTGCCTTCGCAAGGCTTGGCAACTCTTCTTCTTCTTCTTCTATTCCAAGTCTCATCAGAAACGAGCCCGTCTTTGCTGCCCCTACTCCCATCATCAACCCCATTGTG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGAGAAGAAATGGCAAAAGAATCCTACGATCAAGCCATTGCTGCACTCGAGAAACTCCTCAG....................................................................................................................................................................................................................................................................................................................................................................................CGAGAAAGCAGAACTTGGACCAGTTGCTGCAGCAAGAGTTGACCAGATCACTGCTGAATTGAAATCAGCAGACGGCGGCAAGGCATTCGACCCTGTTGAGCACATGAAAGCTGGCTTTATTCATTTCAAGACTGAGAAATATGA..................................................................................................CACAAACCCAGCCTTATATGGTGAGCTAGCAAAGGGCCAGAGCCCTAAG....................................................................................TTCATGGTTTTCGCGTGCTCTGACTCACGAGTCTGCCCATCCCATGTCCTCAACTTCCAACCTGGTGAGGCATTCATGGTTCGTAACATCGCCAACATGGTCCCTGCTTATGACAAG.....................................................................................GTCAGGTACTCTGGAGTAGGAGCAGCCATTGAATACGCCGTTCTTCATCTTAAGGTGGAGAACATCGTTGTCATTGGCCACAGTGCTTGTGGAGGTATCAAAGGTCTCATGTCACTACCTGAAGATGGTAGTGAATCAAC.............................................................................TGCCTTTATTGAGGATTGGGTAAAAATTTGTTTACCTGCCAAGGCAAAGGTTCTGGCCGATCACGGAGGGAAAGAATTTGCACATCAATGCACAGCTTGTGAGAAG................................................................................GAAGCTGTGAACGTTTCACTTGGAAATCTGCTTACGTATCCATT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0236E02-u8qcS/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E291514" ref_strand="+" ref_description="SGN-E291514 [cLET-6-G13]">
      <seq>taacaattgccttactctctcccctgctcaagcttcccttaagaaacctactcgtcccgttgccttcgcaaggcttggcaactcttcttcttcttcttctattccaagtctcatcagaaacgagcccgtctttgctgcccctactcccatcatcaaccccattgtgagagaagaaatggcaaaagaatcctacgatcaagccattgctgcactcgagaaactcctcagcgagaaagcagaacttggaccagttgctgcagcaagagttgaccagatcactgctgaattgaaatcagcagacggcggcaaggcattcgaccctgttgagcacatgaaagctggctttattcatttcaagactgagaaatatgacacaaacccagccttatatggtgagctagcaaagggccagagccctaagttcatggttttcgcgtgctctgactcacgagtctgcccatcccatgtcctcaacttccaacctggtgaggcattcatggttcgtaacatcgccaacatggtccctgcttatgacanggtcaggtactctggagta</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0236E02-u8qcS/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0236E02.1" temp_strand="+" temp_description="C02HBa0236E02.1  AC215430.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0236E02 sequenced_by:kribb upload_account_name:korea">
        <position start="14717" stop="17708"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="15017" g_stop="15182" g_length="166"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="166" r_length="166" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="15183" i_stop="16379" i_length="1197">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.971" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="16380" g_stop="16441" g_length="62"/>
          <reference_exon_boundary r_type="cDNA" r_start="167" r_stop="228" r_length="62" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="16442" i_stop="16813" i_length="372">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="16814" g_stop="16957" g_length="144"/>
          <reference_exon_boundary r_type="cDNA" r_start="229" r_stop="372" r_length="144" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="16958" i_stop="17055" i_length="98">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="17056" g_stop="17104" g_length="49"/>
          <reference_exon_boundary r_type="cDNA" r_start="373" r_stop="421" r_length="49" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="17105" i_stop="17188" i_length="84">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.961" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="17189" g_stop="17305" g_length="117"/>
          <reference_exon_boundary r_type="cDNA" r_start="422" r_stop="538" r_length="117" r_score="0.991"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="17306" i_stop="17390" i_length="85">
            <donor d_prob="0.999" d_score="0.98"/>
            <acceptor a_prob="0.979" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="17391" g_stop="17408" g_length="18"/>
          <reference_exon_boundary r_type="cDNA" r_start="539" r_stop="556" r_length="18" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0236E02.1" gen_strand="+" ref_id="SGN-E291514" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>556</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0236E02.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E291514" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="15017" e_stop="15182"/>
          <exon e_start="16380" e_stop="16441"/>
          <exon e_start="16814" e_stop="16957"/>
          <exon e_start="17056" e_stop="17104"/>
          <exon e_start="17189" e_stop="17305"/>
          <exon e_start="17391" e_stop="17408"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TAACAATTGCCTTACTCTCTCCCCTGCTCAAGCTTCCCTTAAGAAACCTACTCGTCCCGTTGCCTTCGCAAGGCTTGGCAACTCTTCTTCTTCTTCTTCTATTCCAAGTCTCATCAGAAACGAGCCCGTCTTTGCTGCCCCTACTCCCATCATCAACCCCATTGTGGTACGAATTTTTAACTTACATCACTGTATTTTAATCTGTTATAACAAGTTATTTATATTTGACGTTACTTAATTTATTTTTTAAGCAAGACATTTTTTTTGTCTTATCGTATTTTTTGTAACGACTTGTGTCCATGCATGCTAGTTCACGTGAAAATTCAATATTGGCATAGTTCTAAACTTTAGTTTCTAACCACCTTTATTATTGGTATTGTTATTTTTGGCCATGAATCTCCTGAAGTTAGGTGAATTGATCATGTCGCTCTAAATTGTACACGTCTATTGCGTGTACTCAATGACATATAATATATTATTGCAATCCTAAAATAAGTGTTATTTTAATTTATTTTGAACTCATTAAAATAAATATGATATTTTACTGAGTTACTTATATTTATTACTTTGATTTTTTTGAGTACTAATTTGTATTTTGAAACTTTTAAGATGACGAGAGGGTGGAAATAACAAATTAAATTTGAAAATGAACCAAAATAGAGGTGGCAATTAGGTAGAGGTTCTCGCAAAATGAATATTAAATATGTAGGGCCGTATTGTGAATTATGTGGATAATGTTTTTGCTTTCTATTTTTTTTTAAAAAAAATAATTATTACTTACAATAATCCAACGGGTATCCTCGTATGTGCCCATCCTACAAGTGATAAAATGATAAGTACCAGTCTACCATCAAGTTTGTAGGATAGAAACTATTTAGTATACATTGTTTTTGTCTTAATTTCTAGTTTTGGTATCCATCTAAATCGATACTCCATTATGTTAATTATTTCATTTCTTTCTTTTGACATCTACATCACTTTTTAATGTGGTTACCACTTGCTATAATCATACTTCACTTAGCATTTTATTTGAACTTAGTGAAAGTGAAATTTTTCCTAATAATTGGTCTAAAAATTGAAGAAGATTAAAGCCAAGAAATTGAGTTCTTCCTTCTTTCTTCCAACTTTGAAAGTACCGATAGATACTATCATATAAAAAGAAGAGGTGGTCTGACTAACTCAATGAAGTGAATTTTTCAAAAACATGCTCAGAAAAATGAGAAAAATGGAGTTTTTGAAAAGAAAAATTAACAGATATTTAAAGATAAATTTTTGAAATTTGGTTCAAAATTTATGGTCAAATATTAACTTATATTTATATATATACCTCTTCTAAAATGCTAATGAGAATTAGAATTTGCAGAGAGAAGAAATGGCAAAAGAATCCTACGATCAAGCCATTGCTGCACTCGAGAAACTCCTCAGGTTTGTACTCTCTCTACGACTCTACCTTCTAAATCACACTACTTTTTTCTCGATCAAGTGGGGCCCAAAAAATATACATACACCCACACATACGTAGACAAAAAAAATGTTAAAATTTGCGAATATGCAGAGAAAACATAATATAATCATGCAATGTTTACTCGTAAAATTCAATTTCCCGGCAATGAACATGTTACTTGGTTTCGAGTTCTCCAGATCTGCATTAATTTTACCATTCTATCATCATTTTTTTACCCCATATCTGCATTAATTTATCATGGTAATGGTGCTCAAACCACAAATCTTTTTTTTTTCTACCTGAAATATTGCTTCAATAATAATAATGGTCTAAATTATTTTCTGCAATTACAGCGAGAAAGCAGAACTTGGACCAGTTGCTGCAGCAAGAGTTGACCAGATCACTGCTGAATTGAAATCAGCAGACGGCGGCAAGGCATTCGACCCTGTTGAGCACATGAAAGCTGGCTTTATTCATTTCAAGACTGAGAAATATGAGTAAGCAAATTCATTCAAATTAAAATTTCTGCATATTTGATGTTGTAACATTATTAGTGTCTGATAATTTTTCCTGTTTTCTATTTATGTACCAACAGCACAAACCCAGCCTTATATGGTGAGCTAGCAAAGGGCCAGAGCCCTAAGGTACAAATTCCTTGTTAATTTGTTGTCTAATTTTATGATTTGTACGGTTTCTGATGAGTTCTATTGTCCTAAATGTGTAAACAGTTCATGGTTTTCGCGTGCTCTGACTCACGAGTCTGCCCATCCCATGTCCTCAACTTCCAACCTGGTGAGGCATTCATGGTTCGTAACATCGCCAACATGGTCCCTGCTTATGACAAGGTCAGTTACAAATCGATCAACTAGTCGATTATTTCGCTCTGGAATTGTGTTTTTTAAAAATAAAGATGGAATTGAATTTTTACAGGTCAGGTACTCTGGAGTA</genome_strand>
        <mrna_strand>TAACAATTGCCTTACTCTCTCCCCTGCTCAAGCTTCCCTTAAGAAACCTACTCGTCCCGTTGCCTTCGCAAGGCTTGGCAACTCTTCTTCTTCTTCTTCTATTCCAAGTCTCATCAGAAACGAGCCCGTCTTTGCTGCCCCTACTCCCATCATCAACCCCATTGTG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGAGAAGAAATGGCAAAAGAATCCTACGATCAAGCCATTGCTGCACTCGAGAAACTCCTCAG....................................................................................................................................................................................................................................................................................................................................................................................CGAGAAAGCAGAACTTGGACCAGTTGCTGCAGCAAGAGTTGACCAGATCACTGCTGAATTGAAATCAGCAGACGGCGGCAAGGCATTCGACCCTGTTGAGCACATGAAAGCTGGCTTTATTCATTTCAAGACTGAGAAATATGA..................................................................................................CACAAACCCAGCCTTATATGGTGAGCTAGCAAAGGGCCAGAGCCCTAAG....................................................................................TTCATGGTTTTCGCGTGCTCTGACTCACGAGTCTGCCCATCCCATGTCCTCAACTTCCAACCTGGTGAGGCATTCATGGTTCGTAACATCGCCAACATGGTCCCTGCTTATGACANG.....................................................................................GTCAGGTACTCTGGAGTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0236E02-u8qcS/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E279852" ref_strand="+" ref_description="SGN-E279852 [cLER-8-N5]">
      <seq>taacaattgccttactctctcccctgctcaagcttcccttaagaaacctactcgtcccgttgccttcgcaaggcttggcaactcttcttcttcttcttctattccaagtctcatcagaaacgagcccgtctttgctgcccctactcccatcatcaaccccattgtgagagaagaaatggcaaaagaatcctacgatcaagccattgctgcactcgagaaactcctcagcgagaaagcagaacttggaccagttgctgcagcaagagttgaccagatcactgctgaattgaaatcagcagacggcggcaaggcattcgaccctgttgagcacatgaaagctggctttattcatttcaagactgagaaatatgaca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0236E02-u8qcS/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0236E02.1" temp_strand="+" temp_description="C02HBa0236E02.1  AC215430.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0236E02 sequenced_by:kribb upload_account_name:korea">
        <position start="14717" stop="17257"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="15017" g_stop="15182" g_length="166"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="166" r_length="166" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="15183" i_stop="16379" i_length="1197">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.971" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="16380" g_stop="16441" g_length="62"/>
          <reference_exon_boundary r_type="cDNA" r_start="167" r_stop="228" r_length="62" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="16442" i_stop="16813" i_length="372">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="16814" g_stop="16957" g_length="144"/>
          <reference_exon_boundary r_type="cDNA" r_start="229" r_stop="372" r_length="144" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0236E02.1" gen_strand="+" ref_id="SGN-E279852" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>372</cumulative_length_of_scored_exons>
        <coverage percentage="0.995" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0236E02.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E279852" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="15017" e_stop="15182"/>
          <exon e_start="16380" e_stop="16441"/>
          <exon e_start="16814" e_stop="16957"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TAACAATTGCCTTACTCTCTCCCCTGCTCAAGCTTCCCTTAAGAAACCTACTCGTCCCGTTGCCTTCGCAAGGCTTGGCAACTCTTCTTCTTCTTCTTCTATTCCAAGTCTCATCAGAAACGAGCCCGTCTTTGCTGCCCCTACTCCCATCATCAACCCCATTGTGGTACGAATTTTTAACTTACATCACTGTATTTTAATCTGTTATAACAAGTTATTTATATTTGACGTTACTTAATTTATTTTTTAAGCAAGACATTTTTTTTGTCTTATCGTATTTTTTGTAACGACTTGTGTCCATGCATGCTAGTTCACGTGAAAATTCAATATTGGCATAGTTCTAAACTTTAGTTTCTAACCACCTTTATTATTGGTATTGTTATTTTTGGCCATGAATCTCCTGAAGTTAGGTGAATTGATCATGTCGCTCTAAATTGTACACGTCTATTGCGTGTACTCAATGACATATAATATATTATTGCAATCCTAAAATAAGTGTTATTTTAATTTATTTTGAACTCATTAAAATAAATATGATATTTTACTGAGTTACTTATATTTATTACTTTGATTTTTTTGAGTACTAATTTGTATTTTGAAACTTTTAAGATGACGAGAGGGTGGAAATAACAAATTAAATTTGAAAATGAACCAAAATAGAGGTGGCAATTAGGTAGAGGTTCTCGCAAAATGAATATTAAATATGTAGGGCCGTATTGTGAATTATGTGGATAATGTTTTTGCTTTCTATTTTTTTTTAAAAAAAATAATTATTACTTACAATAATCCAACGGGTATCCTCGTATGTGCCCATCCTACAAGTGATAAAATGATAAGTACCAGTCTACCATCAAGTTTGTAGGATAGAAACTATTTAGTATACATTGTTTTTGTCTTAATTTCTAGTTTTGGTATCCATCTAAATCGATACTCCATTATGTTAATTATTTCATTTCTTTCTTTTGACATCTACATCACTTTTTAATGTGGTTACCACTTGCTATAATCATACTTCACTTAGCATTTTATTTGAACTTAGTGAAAGTGAAATTTTTCCTAATAATTGGTCTAAAAATTGAAGAAGATTAAAGCCAAGAAATTGAGTTCTTCCTTCTTTCTTCCAACTTTGAAAGTACCGATAGATACTATCATATAAAAAGAAGAGGTGGTCTGACTAACTCAATGAAGTGAATTTTTCAAAAACATGCTCAGAAAAATGAGAAAAATGGAGTTTTTGAAAAGAAAAATTAACAGATATTTAAAGATAAATTTTTGAAATTTGGTTCAAAATTTATGGTCAAATATTAACTTATATTTATATATATACCTCTTCTAAAATGCTAATGAGAATTAGAATTTGCAGAGAGAAGAAATGGCAAAAGAATCCTACGATCAAGCCATTGCTGCACTCGAGAAACTCCTCAGGTTTGTACTCTCTCTACGACTCTACCTTCTAAATCACACTACTTTTTTCTCGATCAAGTGGGGCCCAAAAAATATACATACACCCACACATACGTAGACAAAAAAAATGTTAAAATTTGCGAATATGCAGAGAAAACATAATATAATCATGCAATGTTTACTCGTAAAATTCAATTTCCCGGCAATGAACATGTTACTTGGTTTCGAGTTCTCCAGATCTGCATTAATTTTACCATTCTATCATCATTTTTTTACCCCATATCTGCATTAATTTATCATGGTAATGGTGCTCAAACCACAAATCTTTTTTTTTTCTACCTGAAATATTGCTTCAATAATAATAATGGTCTAAATTATTTTCTGCAATTACAGCGAGAAAGCAGAACTTGGACCAGTTGCTGCAGCAAGAGTTGACCAGATCACTGCTGAATTGAAATCAGCAGACGGCGGCAAGGCATTCGACCCTGTTGAGCACATGAAAGCTGGCTTTATTCATTTCAAGACTGAGAAATATGA</genome_strand>
        <mrna_strand>TAACAATTGCCTTACTCTCTCCCCTGCTCAAGCTTCCCTTAAGAAACCTACTCGTCCCGTTGCCTTCGCAAGGCTTGGCAACTCTTCTTCTTCTTCTTCTATTCCAAGTCTCATCAGAAACGAGCCCGTCTTTGCTGCCCCTACTCCCATCATCAACCCCATTGTG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGAGAAGAAATGGCAAAAGAATCCTACGATCAAGCCATTGCTGCACTCGAGAAACTCCTCAG....................................................................................................................................................................................................................................................................................................................................................................................CGAGAAAGCAGAACTTGGACCAGTTGCTGCAGCAAGAGTTGACCAGATCACTGCTGAATTGAAATCAGCAGACGGCGGCAAGGCATTCGACCCTGTTGAGCACATGAAAGCTGGCTTTATTCATTTCAAGACTGAGAAATATGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0236E02-u8qcS/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E286970" ref_strand="+" ref_description="SGN-E286970 [cLES-6-C22]">
      <seq>aacaattgccttactctctcccctgctcaagcttcccttaagaaacctactcgtcccgttgccttcgcaaggcttggcaactcttcttcttcttcttctattccaagtctcatcagaaacgagcccgtctttgctgcccctactcccatcatcaaccccattgtgagagaagaaatggcaaaagaatcctacgatcaagccattgctgcactcgagaaactcctcagcgagaaagcagaacttggaccagttgctgcagcaagagttgaccagatcactgctgaattgaaatcagcagacggcggcaaggcattcgaccctgttgagcacatgaaagctggctttattcatttcaagactgagaaatatgacacaaacccagccttatatggtgagctagcaaagggccagagccctaagttcatggttttcgcgtgctctgactcacgagtctgcccatcccatgtcctcaacttccaacctggtgaggcattcatggttcgtaacatcgccaacatggtccctgcttatgacaaggtcaggtactctggagtaggagcagccattgaatacgccgttcttcatcttaaggtggagaacatcgttgtcattggccacagtgcttgtggaggtatcaaaggtctcatgtcactacctgaaagatgtagtgaatcaact</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0236E02-u8qcS/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0236E02.1" temp_strand="+" temp_description="C02HBa0236E02.1  AC215430.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0236E02 sequenced_by:kribb upload_account_name:korea">
        <position start="14718" stop="17830"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="15018" g_stop="15182" g_length="165"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="165" r_length="165" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="15183" i_stop="16379" i_length="1197">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.971" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="16380" g_stop="16441" g_length="62"/>
          <reference_exon_boundary r_type="cDNA" r_start="166" r_stop="227" r_length="62" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="16442" i_stop="16813" i_length="372">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="16814" g_stop="16957" g_length="144"/>
          <reference_exon_boundary r_type="cDNA" r_start="228" r_stop="371" r_length="144" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="16958" i_stop="17055" i_length="98">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="17056" g_stop="17104" g_length="49"/>
          <reference_exon_boundary r_type="cDNA" r_start="372" r_stop="420" r_length="49" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="17105" i_stop="17188" i_length="84">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.961" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="17189" g_stop="17305" g_length="117"/>
          <reference_exon_boundary r_type="cDNA" r_start="421" r_stop="537" r_length="117" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="17306" i_stop="17390" i_length="85">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.979" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="17391" g_stop="17530" g_length="140"/>
          <reference_exon_boundary r_type="cDNA" r_start="538" r_stop="677" r_length="140" r_score="0.971"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0236E02.1" gen_strand="+" ref_id="SGN-E286970" ref_strand="+">
        <total_alignment_score>0.994</total_alignment_score>
        <cumulative_length_of_scored_exons>677</cumulative_length_of_scored_exons>
        <coverage percentage="0.999" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0236E02.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E286970" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="15018" e_stop="15182"/>
          <exon e_start="16380" e_stop="16441"/>
          <exon e_start="16814" e_stop="16957"/>
          <exon e_start="17056" e_stop="17104"/>
          <exon e_start="17189" e_stop="17305"/>
          <exon e_start="17391" e_stop="17530"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AACAATTGCCTTACTCTCTCCCCTGCTCAAGCTTCCCTTAAGAAACCTACTCGTCCCGTTGCCTTCGCAAGGCTTGGCAACTCTTCTTCTTCTTCTTCTATTCCAAGTCTCATCAGAAACGAGCCCGTCTTTGCTGCCCCTACTCCCATCATCAACCCCATTGTGGTACGAATTTTTAACTTACATCACTGTATTTTAATCTGTTATAACAAGTTATTTATATTTGACGTTACTTAATTTATTTTTTAAGCAAGACATTTTTTTTGTCTTATCGTATTTTTTGTAACGACTTGTGTCCATGCATGCTAGTTCACGTGAAAATTCAATATTGGCATAGTTCTAAACTTTAGTTTCTAACCACCTTTATTATTGGTATTGTTATTTTTGGCCATGAATCTCCTGAAGTTAGGTGAATTGATCATGTCGCTCTAAATTGTACACGTCTATTGCGTGTACTCAATGACATATAATATATTATTGCAATCCTAAAATAAGTGTTATTTTAATTTATTTTGAACTCATTAAAATAAATATGATATTTTACTGAGTTACTTATATTTATTACTTTGATTTTTTTGAGTACTAATTTGTATTTTGAAACTTTTAAGATGACGAGAGGGTGGAAATAACAAATTAAATTTGAAAATGAACCAAAATAGAGGTGGCAATTAGGTAGAGGTTCTCGCAAAATGAATATTAAATATGTAGGGCCGTATTGTGAATTATGTGGATAATGTTTTTGCTTTCTATTTTTTTTTAAAAAAAATAATTATTACTTACAATAATCCAACGGGTATCCTCGTATGTGCCCATCCTACAAGTGATAAAATGATAAGTACCAGTCTACCATCAAGTTTGTAGGATAGAAACTATTTAGTATACATTGTTTTTGTCTTAATTTCTAGTTTTGGTATCCATCTAAATCGATACTCCATTATGTTAATTATTTCATTTCTTTCTTTTGACATCTACATCACTTTTTAATGTGGTTACCACTTGCTATAATCATACTTCACTTAGCATTTTATTTGAACTTAGTGAAAGTGAAATTTTTCCTAATAATTGGTCTAAAAATTGAAGAAGATTAAAGCCAAGAAATTGAGTTCTTCCTTCTTTCTTCCAACTTTGAAAGTACCGATAGATACTATCATATAAAAAGAAGAGGTGGTCTGACTAACTCAATGAAGTGAATTTTTCAAAAACATGCTCAGAAAAATGAGAAAAATGGAGTTTTTGAAAAGAAAAATTAACAGATATTTAAAGATAAATTTTTGAAATTTGGTTCAAAATTTATGGTCAAATATTAACTTATATTTATATATATACCTCTTCTAAAATGCTAATGAGAATTAGAATTTGCAGAGAGAAGAAATGGCAAAAGAATCCTACGATCAAGCCATTGCTGCACTCGAGAAACTCCTCAGGTTTGTACTCTCTCTACGACTCTACCTTCTAAATCACACTACTTTTTTCTCGATCAAGTGGGGCCCAAAAAATATACATACACCCACACATACGTAGACAAAAAAAATGTTAAAATTTGCGAATATGCAGAGAAAACATAATATAATCATGCAATGTTTACTCGTAAAATTCAATTTCCCGGCAATGAACATGTTACTTGGTTTCGAGTTCTCCAGATCTGCATTAATTTTACCATTCTATCATCATTTTTTTACCCCATATCTGCATTAATTTATCATGGTAATGGTGCTCAAACCACAAATCTTTTTTTTTTCTACCTGAAATATTGCTTCAATAATAATAATGGTCTAAATTATTTTCTGCAATTACAGCGAGAAAGCAGAACTTGGACCAGTTGCTGCAGCAAGAGTTGACCAGATCACTGCTGAATTGAAATCAGCAGACGGCGGCAAGGCATTCGACCCTGTTGAGCACATGAAAGCTGGCTTTATTCATTTCAAGACTGAGAAATATGAGTAAGCAAATTCATTCAAATTAAAATTTCTGCATATTTGATGTTGTAACATTATTAGTGTCTGATAATTTTTCCTGTTTTCTATTTATGTACCAACAGCACAAACCCAGCCTTATATGGTGAGCTAGCAAAGGGCCAGAGCCCTAAGGTACAAATTCCTTGTTAATTTGTTGTCTAATTTTATGATTTGTACGGTTTCTGATGAGTTCTATTGTCCTAAATGTGTAAACAGTTCATGGTTTTCGCGTGCTCTGACTCACGAGTCTGCCCATCCCATGTCCTCAACTTCCAACCTGGTGAGGCATTCATGGTTCGTAACATCGCCAACATGGTCCCTGCTTATGACAAGGTCAGTTACAAATCGATCAACTAGTCGATTATTTCGCTCTGGAATTGTGTTTTTTAAAAATAAAGATGGAATTGAATTTTTACAGGTCAGGTACTCTGGAGTAGGAGCAGCCATTGAATACGCCGTTCTTCATCTTAAGGTGGAGAACATCGTTGTCATTGGCCACAGTGCTTGTGGAGGTATCAAAGGTCTCATGTCACTACCTGAAGATGGTAGTGAATCAAC</genome_strand>
        <mrna_strand>AACAATTGCCTTACTCTCTCCCCTGCTCAAGCTTCCCTTAAGAAACCTACTCGTCCCGTTGCCTTCGCAAGGCTTGGCAACTCTTCTTCTTCTTCTTCTATTCCAAGTCTCATCAGAAACGAGCCCGTCTTTGCTGCCCCTACTCCCATCATCAACCCCATTGTG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGAGAAGAAATGGCAAAAGAATCCTACGATCAAGCCATTGCTGCACTCGAGAAACTCCTCAG....................................................................................................................................................................................................................................................................................................................................................................................CGAGAAAGCAGAACTTGGACCAGTTGCTGCAGCAAGAGTTGACCAGATCACTGCTGAATTGAAATCAGCAGACGGCGGCAAGGCATTCGACCCTGTTGAGCACATGAAAGCTGGCTTTATTCATTTCAAGACTGAGAAATATGA..................................................................................................CACAAACCCAGCCTTATATGGTGAGCTAGCAAAGGGCCAGAGCCCTAAG....................................................................................TTCATGGTTTTCGCGTGCTCTGACTCACGAGTCTGCCCATCCCATGTCCTCAACTTCCAACCTGGTGAGGCATTCATGGTTCGTAACATCGCCAACATGGTCCCTGCTTATGACAAG.....................................................................................GTCAGGTACTCTGGAGTAGGAGCAGCCATTGAATACGCCGTTCTTCATCTTAAGGTGGAGAACATCGTTGTCATTGGCCACAGTGCTTGTGGAGGTATCAAAGGTCTCATGTCACTACCTGAAAGATGTAGTGAATCAAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0236E02-u8qcS/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E727824" ref_strand="+" ref_description="SGN-E727824 [LA15DD09]">
      <seq>caattgccttactctctcccctgctcaagcttcccttaagaaacctactcgtcccgttgccttcgcaaggcttggcaactcttcttcttcttcttctattccaagtctcatcagaaacgagcccgtctttgctgcccctactcccatcatcaaccccattgtgagagaagaaatggcaaaagaatcctacgatcaagccattgctgcactcgagaaactcctcagcgagaaagcagaacttggaccagttgctgcagcaagagttgaccagatcactgctgaattgaaatcagcagacggcggcaaggcattcgaccctgttgagcacatgaaagctggctttattcatttcaagactgagaaatatgacacaaacccagccttatatggtgagctagcaaagggccagagccctaagttcatggttttcgcgtgctctgactcacgagtctgcccatcccatgtcctcaacttccaacctggtgaggcattcatggttcgtaacatcgccaacatggtccctgcttatgacaaggtcaggtactctggagtaggagcagccattgaatacgccgttcttcatcttaaggtggagaacatcgttgtcattggccacagtgcttgtggaggtatcaaaggtctcatgtcactacctgaagatggtagtgaatcaactgcctttattgaggattgggtaaaaatttgtttacctgccaaggcaaaggttctggccgatcacggagggaaagaatttgcacatcaatgcacagcttgtgagaaggaagctgtgaacgtttcacttggaaatctgcttacgtatccattcgtg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0236E02-u8qcS/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0236E02.1" temp_strand="+" temp_description="C02HBa0236E02.1  AC215430.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0236E02 sequenced_by:kribb upload_account_name:korea">
        <position start="14720" stop="18141"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="15020" g_stop="15182" g_length="163"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="163" r_length="163" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="15183" i_stop="16379" i_length="1197">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.971" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="16380" g_stop="16441" g_length="62"/>
          <reference_exon_boundary r_type="cDNA" r_start="164" r_stop="225" r_length="62" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="16442" i_stop="16813" i_length="372">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="16814" g_stop="16957" g_length="144"/>
          <reference_exon_boundary r_type="cDNA" r_start="226" r_stop="369" r_length="144" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="16958" i_stop="17055" i_length="98">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="17056" g_stop="17104" g_length="49"/>
          <reference_exon_boundary r_type="cDNA" r_start="370" r_stop="418" r_length="49" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="17105" i_stop="17188" i_length="84">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.961" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="17189" g_stop="17305" g_length="117"/>
          <reference_exon_boundary r_type="cDNA" r_start="419" r_stop="535" r_length="117" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="17306" i_stop="17390" i_length="85">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.979" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="17391" g_stop="17530" g_length="140"/>
          <reference_exon_boundary r_type="cDNA" r_start="536" r_stop="675" r_length="140" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="17531" i_stop="17607" i_length="77">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.948" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="17608" g_stop="17713" g_length="106"/>
          <reference_exon_boundary r_type="cDNA" r_start="676" r_stop="781" r_length="106" r_score="1.000"/>
        </exon>
        <intron i_serial="7">
          <gDNA_intron_boundary i_start="17714" i_stop="17793" i_length="80">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="8">
          <gDNA_exon_boundary g_start="17794" g_stop="17841" g_length="48"/>
          <reference_exon_boundary r_type="cDNA" r_start="782" r_stop="829" r_length="48" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0236E02.1" gen_strand="+" ref_id="SGN-E727824" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>829</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0236E02.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E727824" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="15020" e_stop="15182"/>
          <exon e_start="16380" e_stop="16441"/>
          <exon e_start="16814" e_stop="16957"/>
          <exon e_start="17056" e_stop="17104"/>
          <exon e_start="17189" e_stop="17305"/>
          <exon e_start="17391" e_stop="17530"/>
          <exon e_start="17608" e_stop="17713"/>
          <exon e_start="17794" e_stop="17841"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAATTGCCTTACTCTCTCCCCTGCTCAAGCTTCCCTTAAGAAACCTACTCGTCCCGTTGCCTTCGCAAGGCTTGGCAACTCTTCTTCTTCTTCTTCTATTCCAAGTCTCATCAGAAACGAGCCCGTCTTTGCTGCCCCTACTCCCATCATCAACCCCATTGTGGTACGAATTTTTAACTTACATCACTGTATTTTAATCTGTTATAACAAGTTATTTATATTTGACGTTACTTAATTTATTTTTTAAGCAAGACATTTTTTTTGTCTTATCGTATTTTTTGTAACGACTTGTGTCCATGCATGCTAGTTCACGTGAAAATTCAATATTGGCATAGTTCTAAACTTTAGTTTCTAACCACCTTTATTATTGGTATTGTTATTTTTGGCCATGAATCTCCTGAAGTTAGGTGAATTGATCATGTCGCTCTAAATTGTACACGTCTATTGCGTGTACTCAATGACATATAATATATTATTGCAATCCTAAAATAAGTGTTATTTTAATTTATTTTGAACTCATTAAAATAAATATGATATTTTACTGAGTTACTTATATTTATTACTTTGATTTTTTTGAGTACTAATTTGTATTTTGAAACTTTTAAGATGACGAGAGGGTGGAAATAACAAATTAAATTTGAAAATGAACCAAAATAGAGGTGGCAATTAGGTAGAGGTTCTCGCAAAATGAATATTAAATATGTAGGGCCGTATTGTGAATTATGTGGATAATGTTTTTGCTTTCTATTTTTTTTTAAAAAAAATAATTATTACTTACAATAATCCAACGGGTATCCTCGTATGTGCCCATCCTACAAGTGATAAAATGATAAGTACCAGTCTACCATCAAGTTTGTAGGATAGAAACTATTTAGTATACATTGTTTTTGTCTTAATTTCTAGTTTTGGTATCCATCTAAATCGATACTCCATTATGTTAATTATTTCATTTCTTTCTTTTGACATCTACATCACTTTTTAATGTGGTTACCACTTGCTATAATCATACTTCACTTAGCATTTTATTTGAACTTAGTGAAAGTGAAATTTTTCCTAATAATTGGTCTAAAAATTGAAGAAGATTAAAGCCAAGAAATTGAGTTCTTCCTTCTTTCTTCCAACTTTGAAAGTACCGATAGATACTATCATATAAAAAGAAGAGGTGGTCTGACTAACTCAATGAAGTGAATTTTTCAAAAACATGCTCAGAAAAATGAGAAAAATGGAGTTTTTGAAAAGAAAAATTAACAGATATTTAAAGATAAATTTTTGAAATTTGGTTCAAAATTTATGGTCAAATATTAACTTATATTTATATATATACCTCTTCTAAAATGCTAATGAGAATTAGAATTTGCAGAGAGAAGAAATGGCAAAAGAATCCTACGATCAAGCCATTGCTGCACTCGAGAAACTCCTCAGGTTTGTACTCTCTCTACGACTCTACCTTCTAAATCACACTACTTTTTTCTCGATCAAGTGGGGCCCAAAAAATATACATACACCCACACATACGTAGACAAAAAAAATGTTAAAATTTGCGAATATGCAGAGAAAACATAATATAATCATGCAATGTTTACTCGTAAAATTCAATTTCCCGGCAATGAACATGTTACTTGGTTTCGAGTTCTCCAGATCTGCATTAATTTTACCATTCTATCATCATTTTTTTACCCCATATCTGCATTAATTTATCATGGTAATGGTGCTCAAACCACAAATCTTTTTTTTTTCTACCTGAAATATTGCTTCAATAATAATAATGGTCTAAATTATTTTCTGCAATTACAGCGAGAAAGCAGAACTTGGACCAGTTGCTGCAGCAAGAGTTGACCAGATCACTGCTGAATTGAAATCAGCAGACGGCGGCAAGGCATTCGACCCTGTTGAGCACATGAAAGCTGGCTTTATTCATTTCAAGACTGAGAAATATGAGTAAGCAAATTCATTCAAATTAAAATTTCTGCATATTTGATGTTGTAACATTATTAGTGTCTGATAATTTTTCCTGTTTTCTATTTATGTACCAACAGCACAAACCCAGCCTTATATGGTGAGCTAGCAAAGGGCCAGAGCCCTAAGGTACAAATTCCTTGTTAATTTGTTGTCTAATTTTATGATTTGTACGGTTTCTGATGAGTTCTATTGTCCTAAATGTGTAAACAGTTCATGGTTTTCGCGTGCTCTGACTCACGAGTCTGCCCATCCCATGTCCTCAACTTCCAACCTGGTGAGGCATTCATGGTTCGTAACATCGCCAACATGGTCCCTGCTTATGACAAGGTCAGTTACAAATCGATCAACTAGTCGATTATTTCGCTCTGGAATTGTGTTTTTTAAAAATAAAGATGGAATTGAATTTTTACAGGTCAGGTACTCTGGAGTAGGAGCAGCCATTGAATACGCCGTTCTTCATCTTAAGGTGGAGAACATCGTTGTCATTGGCCACAGTGCTTGTGGAGGTATCAAAGGTCTCATGTCACTACCTGAAGATGGTAGTGAATCAACGTACGTCACTCTATAAATCTATTCATTCAAAACACTTATCCTTAACAGATGATTGATTAATAATCTAATATACGCAGTGCCTTTATTGAGGATTGGGTAAAAATTTGTTTACCTGCCAAGGCAAAGGTTCTGGCCGATCACGGAGGGAAAGAATTTGCACATCAATGCACAGCTTGTGAGAAGGTAAAATTCAAATTTAACTTTTTGATTATCAATTAATTACATATATAGCAGTATTTTATAATTGATGAAAAATGTTGCAGGAAGCTGTGAACGTTTCACTTGGAAATCTGCTTACGTATCCATTCGTG</genome_strand>
        <mrna_strand>CAATTGCCTTACTCTCTCCCCTGCTCAAGCTTCCCTTAAGAAACCTACTCGTCCCGTTGCCTTCGCAAGGCTTGGCAACTCTTCTTCTTCTTCTTCTATTCCAAGTCTCATCAGAAACGAGCCCGTCTTTGCTGCCCCTACTCCCATCATCAACCCCATTGTG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGAGAAGAAATGGCAAAAGAATCCTACGATCAAGCCATTGCTGCACTCGAGAAACTCCTCAG....................................................................................................................................................................................................................................................................................................................................................................................CGAGAAAGCAGAACTTGGACCAGTTGCTGCAGCAAGAGTTGACCAGATCACTGCTGAATTGAAATCAGCAGACGGCGGCAAGGCATTCGACCCTGTTGAGCACATGAAAGCTGGCTTTATTCATTTCAAGACTGAGAAATATGA..................................................................................................CACAAACCCAGCCTTATATGGTGAGCTAGCAAAGGGCCAGAGCCCTAAG....................................................................................TTCATGGTTTTCGCGTGCTCTGACTCACGAGTCTGCCCATCCCATGTCCTCAACTTCCAACCTGGTGAGGCATTCATGGTTCGTAACATCGCCAACATGGTCCCTGCTTATGACAAG.....................................................................................GTCAGGTACTCTGGAGTAGGAGCAGCCATTGAATACGCCGTTCTTCATCTTAAGGTGGAGAACATCGTTGTCATTGGCCACAGTGCTTGTGGAGGTATCAAAGGTCTCATGTCACTACCTGAAGATGGTAGTGAATCAAC.............................................................................TGCCTTTATTGAGGATTGGGTAAAAATTTGTTTACCTGCCAAGGCAAAGGTTCTGGCCGATCACGGAGGGAAAGAATTTGCACATCAATGCACAGCTTGTGAGAAG................................................................................GAAGCTGTGAACGTTTCACTTGGAAATCTGCTTACGTATCCATTCGTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0236E02-u8qcS/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E288399" ref_strand="+" ref_description="SGN-E288399 [cLES-16-F15]">
      <seq>caattgccttactctctcccctgctcaagcttcccttaagaaacctactcgtcccgttgccttcgcaaggcttggcaactcttcttcttcttcttctattccaagtctcatcagaaacgagcccgtctttgctgcccctactcccatcatcaaccccattgtgagagaagaaatggcaaaagaatcctacgatcaagccattgctgcactcgagaaactcctcagcgagaaagcagaacttggaccagttgctgcagcaagagttgaccagatcactgctgaattgaaatcagcagacggcggcaaggcattcgaccctgttgagcacatgaaagctggctttattcatttcaagactgagaaatatgacacaaacccagccttatatggtgagctagcaaagggccagagcccgaagttcatggttttcgcgtgctctgactcacgagtctgcccatcccatgtcctcaacttccaacctggtgaggcattcatggttcgtaacat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0236E02-u8qcS/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0236E02.1" temp_strand="+" temp_description="C02HBa0236E02.1  AC215430.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0236E02 sequenced_by:kribb upload_account_name:korea">
        <position start="14720" stop="17577"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="15020" g_stop="15182" g_length="163"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="163" r_length="163" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="15183" i_stop="16379" i_length="1197">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.971" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="16380" g_stop="16441" g_length="62"/>
          <reference_exon_boundary r_type="cDNA" r_start="164" r_stop="225" r_length="62" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="16442" i_stop="16813" i_length="372">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="16814" g_stop="16957" g_length="144"/>
          <reference_exon_boundary r_type="cDNA" r_start="226" r_stop="369" r_length="144" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="16958" i_stop="17055" i_length="98">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="17056" g_stop="17104" g_length="49"/>
          <reference_exon_boundary r_type="cDNA" r_start="370" r_stop="418" r_length="49" r_score="0.980"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="17105" i_stop="17188" i_length="84">
            <donor d_prob="1.000" d_score="0.98"/>
            <acceptor a_prob="0.961" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="17189" g_stop="17277" g_length="89"/>
          <reference_exon_boundary r_type="cDNA" r_start="419" r_stop="507" r_length="89" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0236E02.1" gen_strand="+" ref_id="SGN-E288399" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>507</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0236E02.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E288399" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="15020" e_stop="15182"/>
          <exon e_start="16380" e_stop="16441"/>
          <exon e_start="16814" e_stop="16957"/>
          <exon e_start="17056" e_stop="17104"/>
          <exon e_start="17189" e_stop="17277"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAATTGCCTTACTCTCTCCCCTGCTCAAGCTTCCCTTAAGAAACCTACTCGTCCCGTTGCCTTCGCAAGGCTTGGCAACTCTTCTTCTTCTTCTTCTATTCCAAGTCTCATCAGAAACGAGCCCGTCTTTGCTGCCCCTACTCCCATCATCAACCCCATTGTGGTACGAATTTTTAACTTACATCACTGTATTTTAATCTGTTATAACAAGTTATTTATATTTGACGTTACTTAATTTATTTTTTAAGCAAGACATTTTTTTTGTCTTATCGTATTTTTTGTAACGACTTGTGTCCATGCATGCTAGTTCACGTGAAAATTCAATATTGGCATAGTTCTAAACTTTAGTTTCTAACCACCTTTATTATTGGTATTGTTATTTTTGGCCATGAATCTCCTGAAGTTAGGTGAATTGATCATGTCGCTCTAAATTGTACACGTCTATTGCGTGTACTCAATGACATATAATATATTATTGCAATCCTAAAATAAGTGTTATTTTAATTTATTTTGAACTCATTAAAATAAATATGATATTTTACTGAGTTACTTATATTTATTACTTTGATTTTTTTGAGTACTAATTTGTATTTTGAAACTTTTAAGATGACGAGAGGGTGGAAATAACAAATTAAATTTGAAAATGAACCAAAATAGAGGTGGCAATTAGGTAGAGGTTCTCGCAAAATGAATATTAAATATGTAGGGCCGTATTGTGAATTATGTGGATAATGTTTTTGCTTTCTATTTTTTTTTAAAAAAAATAATTATTACTTACAATAATCCAACGGGTATCCTCGTATGTGCCCATCCTACAAGTGATAAAATGATAAGTACCAGTCTACCATCAAGTTTGTAGGATAGAAACTATTTAGTATACATTGTTTTTGTCTTAATTTCTAGTTTTGGTATCCATCTAAATCGATACTCCATTATGTTAATTATTTCATTTCTTTCTTTTGACATCTACATCACTTTTTAATGTGGTTACCACTTGCTATAATCATACTTCACTTAGCATTTTATTTGAACTTAGTGAAAGTGAAATTTTTCCTAATAATTGGTCTAAAAATTGAAGAAGATTAAAGCCAAGAAATTGAGTTCTTCCTTCTTTCTTCCAACTTTGAAAGTACCGATAGATACTATCATATAAAAAGAAGAGGTGGTCTGACTAACTCAATGAAGTGAATTTTTCAAAAACATGCTCAGAAAAATGAGAAAAATGGAGTTTTTGAAAAGAAAAATTAACAGATATTTAAAGATAAATTTTTGAAATTTGGTTCAAAATTTATGGTCAAATATTAACTTATATTTATATATATACCTCTTCTAAAATGCTAATGAGAATTAGAATTTGCAGAGAGAAGAAATGGCAAAAGAATCCTACGATCAAGCCATTGCTGCACTCGAGAAACTCCTCAGGTTTGTACTCTCTCTACGACTCTACCTTCTAAATCACACTACTTTTTTCTCGATCAAGTGGGGCCCAAAAAATATACATACACCCACACATACGTAGACAAAAAAAATGTTAAAATTTGCGAATATGCAGAGAAAACATAATATAATCATGCAATGTTTACTCGTAAAATTCAATTTCCCGGCAATGAACATGTTACTTGGTTTCGAGTTCTCCAGATCTGCATTAATTTTACCATTCTATCATCATTTTTTTACCCCATATCTGCATTAATTTATCATGGTAATGGTGCTCAAACCACAAATCTTTTTTTTTTCTACCTGAAATATTGCTTCAATAATAATAATGGTCTAAATTATTTTCTGCAATTACAGCGAGAAAGCAGAACTTGGACCAGTTGCTGCAGCAAGAGTTGACCAGATCACTGCTGAATTGAAATCAGCAGACGGCGGCAAGGCATTCGACCCTGTTGAGCACATGAAAGCTGGCTTTATTCATTTCAAGACTGAGAAATATGAGTAAGCAAATTCATTCAAATTAAAATTTCTGCATATTTGATGTTGTAACATTATTAGTGTCTGATAATTTTTCCTGTTTTCTATTTATGTACCAACAGCACAAACCCAGCCTTATATGGTGAGCTAGCAAAGGGCCAGAGCCCTAAGGTACAAATTCCTTGTTAATTTGTTGTCTAATTTTATGATTTGTACGGTTTCTGATGAGTTCTATTGTCCTAAATGTGTAAACAGTTCATGGTTTTCGCGTGCTCTGACTCACGAGTCTGCCCATCCCATGTCCTCAACTTCCAACCTGGTGAGGCATTCATGGTTCGTAACAT</genome_strand>
        <mrna_strand>CAATTGCCTTACTCTCTCCCCTGCTCAAGCTTCCCTTAAGAAACCTACTCGTCCCGTTGCCTTCGCAAGGCTTGGCAACTCTTCTTCTTCTTCTTCTATTCCAAGTCTCATCAGAAACGAGCCCGTCTTTGCTGCCCCTACTCCCATCATCAACCCCATTGTG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGAGAAGAAATGGCAAAAGAATCCTACGATCAAGCCATTGCTGCACTCGAGAAACTCCTCAG....................................................................................................................................................................................................................................................................................................................................................................................CGAGAAAGCAGAACTTGGACCAGTTGCTGCAGCAAGAGTTGACCAGATCACTGCTGAATTGAAATCAGCAGACGGCGGCAAGGCATTCGACCCTGTTGAGCACATGAAAGCTGGCTTTATTCATTTCAAGACTGAGAAATATGA..................................................................................................CACAAACCCAGCCTTATATGGTGAGCTAGCAAAGGGCCAGAGCCCGAAG....................................................................................TTCATGGTTTTCGCGTGCTCTGACTCACGAGTCTGCCCATCCCATGTCCTCAACTTCCAACCTGGTGAGGCATTCATGGTTCGTAACAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0236E02-u8qcS/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E473444" ref_strand="+" ref_description="SGN-E473444 [cSTB-32-K20]">
      <seq>caattgccttactatctcccctgctcaagcttcccttaagaaacctactcgtcccgttgccttcgcaaggcttggcaactcttcttcttcttcttctattccaagtctcatcagaaacgagcccgtcttcgctgcccctactgccatcatcaaccccattgtgagagaagaaatggcaaaagaatcctactatcaggccattgctgcactcgagaaactcctcagtgagaaagcagaacttggaccagttgctgcagcaagagttgaccacattactgctgaattgaaatcagcagatggcagcaaggccttcgaccctgttgagcacatgaaagctggctttattcatttcaaaactgagaaatatgata</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0236E02-u8qcS/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0236E02.1" temp_strand="+" temp_description="C02HBa0236E02.1  AC215430.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0236E02 sequenced_by:kribb upload_account_name:korea">
        <position start="14720" stop="17260"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="15020" g_stop="15182" g_length="163"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="163" r_length="163" r_score="0.982"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="15183" i_stop="16379" i_length="1197">
            <donor d_prob="1.000" d_score="0.96"/>
            <acceptor a_prob="0.971" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="16380" g_stop="16441" g_length="62"/>
          <reference_exon_boundary r_type="cDNA" r_start="164" r_stop="225" r_length="62" r_score="0.968"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="16442" i_stop="16813" i_length="372">
            <donor d_prob="0.999" d_score="0.96"/>
            <acceptor a_prob="1.000" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="16814" g_stop="16957" g_length="144"/>
          <reference_exon_boundary r_type="cDNA" r_start="226" r_stop="369" r_length="144" r_score="0.951"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0236E02.1" gen_strand="+" ref_id="SGN-E473444" ref_strand="+">
        <total_alignment_score>0.967</total_alignment_score>
        <cumulative_length_of_scored_exons>369</cumulative_length_of_scored_exons>
        <coverage percentage="0.995" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0236E02.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E473444" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="15020" e_stop="15182"/>
          <exon e_start="16380" e_stop="16441"/>
          <exon e_start="16814" e_stop="16957"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAATTGCCTTACTCTCTCCCCTGCTCAAGCTTCCCTTAAGAAACCTACTCGTCCCGTTGCCTTCGCAAGGCTTGGCAACTCTTCTTCTTCTTCTTCTATTCCAAGTCTCATCAGAAACGAGCCCGTCTTTGCTGCCCCTACTCCCATCATCAACCCCATTGTGGTACGAATTTTTAACTTACATCACTGTATTTTAATCTGTTATAACAAGTTATTTATATTTGACGTTACTTAATTTATTTTTTAAGCAAGACATTTTTTTTGTCTTATCGTATTTTTTGTAACGACTTGTGTCCATGCATGCTAGTTCACGTGAAAATTCAATATTGGCATAGTTCTAAACTTTAGTTTCTAACCACCTTTATTATTGGTATTGTTATTTTTGGCCATGAATCTCCTGAAGTTAGGTGAATTGATCATGTCGCTCTAAATTGTACACGTCTATTGCGTGTACTCAATGACATATAATATATTATTGCAATCCTAAAATAAGTGTTATTTTAATTTATTTTGAACTCATTAAAATAAATATGATATTTTACTGAGTTACTTATATTTATTACTTTGATTTTTTTGAGTACTAATTTGTATTTTGAAACTTTTAAGATGACGAGAGGGTGGAAATAACAAATTAAATTTGAAAATGAACCAAAATAGAGGTGGCAATTAGGTAGAGGTTCTCGCAAAATGAATATTAAATATGTAGGGCCGTATTGTGAATTATGTGGATAATGTTTTTGCTTTCTATTTTTTTTTAAAAAAAATAATTATTACTTACAATAATCCAACGGGTATCCTCGTATGTGCCCATCCTACAAGTGATAAAATGATAAGTACCAGTCTACCATCAAGTTTGTAGGATAGAAACTATTTAGTATACATTGTTTTTGTCTTAATTTCTAGTTTTGGTATCCATCTAAATCGATACTCCATTATGTTAATTATTTCATTTCTTTCTTTTGACATCTACATCACTTTTTAATGTGGTTACCACTTGCTATAATCATACTTCACTTAGCATTTTATTTGAACTTAGTGAAAGTGAAATTTTTCCTAATAATTGGTCTAAAAATTGAAGAAGATTAAAGCCAAGAAATTGAGTTCTTCCTTCTTTCTTCCAACTTTGAAAGTACCGATAGATACTATCATATAAAAAGAAGAGGTGGTCTGACTAACTCAATGAAGTGAATTTTTCAAAAACATGCTCAGAAAAATGAGAAAAATGGAGTTTTTGAAAAGAAAAATTAACAGATATTTAAAGATAAATTTTTGAAATTTGGTTCAAAATTTATGGTCAAATATTAACTTATATTTATATATATACCTCTTCTAAAATGCTAATGAGAATTAGAATTTGCAGAGAGAAGAAATGGCAAAAGAATCCTACGATCAAGCCATTGCTGCACTCGAGAAACTCCTCAGGTTTGTACTCTCTCTACGACTCTACCTTCTAAATCACACTACTTTTTTCTCGATCAAGTGGGGCCCAAAAAATATACATACACCCACACATACGTAGACAAAAAAAATGTTAAAATTTGCGAATATGCAGAGAAAACATAATATAATCATGCAATGTTTACTCGTAAAATTCAATTTCCCGGCAATGAACATGTTACTTGGTTTCGAGTTCTCCAGATCTGCATTAATTTTACCATTCTATCATCATTTTTTTACCCCATATCTGCATTAATTTATCATGGTAATGGTGCTCAAACCACAAATCTTTTTTTTTTCTACCTGAAATATTGCTTCAATAATAATAATGGTCTAAATTATTTTCTGCAATTACAGCGAGAAAGCAGAACTTGGACCAGTTGCTGCAGCAAGAGTTGACCAGATCACTGCTGAATTGAAATCAGCAGACGGCGGCAAGGCATTCGACCCTGTTGAGCACATGAAAGCTGGCTTTATTCATTTCAAGACTGAGAAATATGA</genome_strand>
        <mrna_strand>CAATTGCCTTACTATCTCCCCTGCTCAAGCTTCCCTTAAGAAACCTACTCGTCCCGTTGCCTTCGCAAGGCTTGGCAACTCTTCTTCTTCTTCTTCTATTCCAAGTCTCATCAGAAACGAGCCCGTCTTCGCTGCCCCTACTGCCATCATCAACCCCATTGTG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGAGAAGAAATGGCAAAAGAATCCTACTATCAGGCCATTGCTGCACTCGAGAAACTCCTCAG....................................................................................................................................................................................................................................................................................................................................................................................TGAGAAAGCAGAACTTGGACCAGTTGCTGCAGCAAGAGTTGACCACATTACTGCTGAATTGAAATCAGCAGATGGCAGCAAGGCCTTCGACCCTGTTGAGCACATGAAAGCTGGCTTTATTCATTTCAAAACTGAGAAATATGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0236E02-u8qcS/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E727060" ref_strand="+" ref_description="SGN-E727060 [LA13CE01]">
      <seq>aattgccttactctctcccctgctcaagcttcccttaagaaacctactcgtcccgttgccttcgcaaggcttggcaactcttcttcttcttcttctattccaagtctcatcagaaacgagcccgtctttgctgcccctactcccatcatcaaccccattgtgagagaagaaatggcaaaagaatcctacgatcaagccattgctgcactcgagaaactcctcagcgagaaagcagaacttggaccagttgctgcagcaagagttgaccagatcactgctgaattgaaatcagcagacggcggcaaggcattcgaccctgttgagcacatgaaagctggctttattcatttcaagactgagaaatatgacacaaacccagccttatatggtgagctagcaaagggccagagccctaagttcatggttttcgcgtgctctgactcacgagtctgcccatcccatgtcctcaacttccaacctggtgaggcattcatggttcgtaacatcgccaacatggtccctgcttatgacaaggtcaggtactctggagtaggagcagccattgaatacgccgttcttcatcttaaggtggagaacatcgttgtcattggccacagtgcttgtggaggtatcaaaggtctcatgtcactacctgaagatggtagtgaatcaactgcctttattgaggattgggtaaaaatttgtttacctgccaaggcaaaggttctggccgatcacggagggaaagaatttgcacatcaatgcacagcttgtgagaaggaagctgtgaacgtttcacttggaaatctgcttacgtatccatt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0236E02-u8qcS/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0236E02.1" temp_strand="+" temp_description="C02HBa0236E02.1  AC215430.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0236E02 sequenced_by:kribb upload_account_name:korea">
        <position start="14721" stop="18137"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="15021" g_stop="15182" g_length="162"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="162" r_length="162" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="15183" i_stop="16379" i_length="1197">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.971" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="16380" g_stop="16441" g_length="62"/>
          <reference_exon_boundary r_type="cDNA" r_start="163" r_stop="224" r_length="62" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="16442" i_stop="16813" i_length="372">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="16814" g_stop="16957" g_length="144"/>
          <reference_exon_boundary r_type="cDNA" r_start="225" r_stop="368" r_length="144" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="16958" i_stop="17055" i_length="98">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="17056" g_stop="17104" g_length="49"/>
          <reference_exon_boundary r_type="cDNA" r_start="369" r_stop="417" r_length="49" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="17105" i_stop="17188" i_length="84">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.961" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="17189" g_stop="17305" g_length="117"/>
          <reference_exon_boundary r_type="cDNA" r_start="418" r_stop="534" r_length="117" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="17306" i_stop="17390" i_length="85">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.979" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="17391" g_stop="17530" g_length="140"/>
          <reference_exon_boundary r_type="cDNA" r_start="535" r_stop="674" r_length="140" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="17531" i_stop="17607" i_length="77">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.948" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="17608" g_stop="17713" g_length="106"/>
          <reference_exon_boundary r_type="cDNA" r_start="675" r_stop="780" r_length="106" r_score="1.000"/>
        </exon>
        <intron i_serial="7">
          <gDNA_intron_boundary i_start="17714" i_stop="17793" i_length="80">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="8">
          <gDNA_exon_boundary g_start="17794" g_stop="17837" g_length="44"/>
          <reference_exon_boundary r_type="cDNA" r_start="781" r_stop="824" r_length="44" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0236E02.1" gen_strand="+" ref_id="SGN-E727060" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>824</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0236E02.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E727060" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="15021" e_stop="15182"/>
          <exon e_start="16380" e_stop="16441"/>
          <exon e_start="16814" e_stop="16957"/>
          <exon e_start="17056" e_stop="17104"/>
          <exon e_start="17189" e_stop="17305"/>
          <exon e_start="17391" e_stop="17530"/>
          <exon e_start="17608" e_stop="17713"/>
          <exon e_start="17794" e_stop="17837"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AATTGCCTTACTCTCTCCCCTGCTCAAGCTTCCCTTAAGAAACCTACTCGTCCCGTTGCCTTCGCAAGGCTTGGCAACTCTTCTTCTTCTTCTTCTATTCCAAGTCTCATCAGAAACGAGCCCGTCTTTGCTGCCCCTACTCCCATCATCAACCCCATTGTGGTACGAATTTTTAACTTACATCACTGTATTTTAATCTGTTATAACAAGTTATTTATATTTGACGTTACTTAATTTATTTTTTAAGCAAGACATTTTTTTTGTCTTATCGTATTTTTTGTAACGACTTGTGTCCATGCATGCTAGTTCACGTGAAAATTCAATATTGGCATAGTTCTAAACTTTAGTTTCTAACCACCTTTATTATTGGTATTGTTATTTTTGGCCATGAATCTCCTGAAGTTAGGTGAATTGATCATGTCGCTCTAAATTGTACACGTCTATTGCGTGTACTCAATGACATATAATATATTATTGCAATCCTAAAATAAGTGTTATTTTAATTTATTTTGAACTCATTAAAATAAATATGATATTTTACTGAGTTACTTATATTTATTACTTTGATTTTTTTGAGTACTAATTTGTATTTTGAAACTTTTAAGATGACGAGAGGGTGGAAATAACAAATTAAATTTGAAAATGAACCAAAATAGAGGTGGCAATTAGGTAGAGGTTCTCGCAAAATGAATATTAAATATGTAGGGCCGTATTGTGAATTATGTGGATAATGTTTTTGCTTTCTATTTTTTTTTAAAAAAAATAATTATTACTTACAATAATCCAACGGGTATCCTCGTATGTGCCCATCCTACAAGTGATAAAATGATAAGTACCAGTCTACCATCAAGTTTGTAGGATAGAAACTATTTAGTATACATTGTTTTTGTCTTAATTTCTAGTTTTGGTATCCATCTAAATCGATACTCCATTATGTTAATTATTTCATTTCTTTCTTTTGACATCTACATCACTTTTTAATGTGGTTACCACTTGCTATAATCATACTTCACTTAGCATTTTATTTGAACTTAGTGAAAGTGAAATTTTTCCTAATAATTGGTCTAAAAATTGAAGAAGATTAAAGCCAAGAAATTGAGTTCTTCCTTCTTTCTTCCAACTTTGAAAGTACCGATAGATACTATCATATAAAAAGAAGAGGTGGTCTGACTAACTCAATGAAGTGAATTTTTCAAAAACATGCTCAGAAAAATGAGAAAAATGGAGTTTTTGAAAAGAAAAATTAACAGATATTTAAAGATAAATTTTTGAAATTTGGTTCAAAATTTATGGTCAAATATTAACTTATATTTATATATATACCTCTTCTAAAATGCTAATGAGAATTAGAATTTGCAGAGAGAAGAAATGGCAAAAGAATCCTACGATCAAGCCATTGCTGCACTCGAGAAACTCCTCAGGTTTGTACTCTCTCTACGACTCTACCTTCTAAATCACACTACTTTTTTCTCGATCAAGTGGGGCCCAAAAAATATACATACACCCACACATACGTAGACAAAAAAAATGTTAAAATTTGCGAATATGCAGAGAAAACATAATATAATCATGCAATGTTTACTCGTAAAATTCAATTTCCCGGCAATGAACATGTTACTTGGTTTCGAGTTCTCCAGATCTGCATTAATTTTACCATTCTATCATCATTTTTTTACCCCATATCTGCATTAATTTATCATGGTAATGGTGCTCAAACCACAAATCTTTTTTTTTTCTACCTGAAATATTGCTTCAATAATAATAATGGTCTAAATTATTTTCTGCAATTACAGCGAGAAAGCAGAACTTGGACCAGTTGCTGCAGCAAGAGTTGACCAGATCACTGCTGAATTGAAATCAGCAGACGGCGGCAAGGCATTCGACCCTGTTGAGCACATGAAAGCTGGCTTTATTCATTTCAAGACTGAGAAATATGAGTAAGCAAATTCATTCAAATTAAAATTTCTGCATATTTGATGTTGTAACATTATTAGTGTCTGATAATTTTTCCTGTTTTCTATTTATGTACCAACAGCACAAACCCAGCCTTATATGGTGAGCTAGCAAAGGGCCAGAGCCCTAAGGTACAAATTCCTTGTTAATTTGTTGTCTAATTTTATGATTTGTACGGTTTCTGATGAGTTCTATTGTCCTAAATGTGTAAACAGTTCATGGTTTTCGCGTGCTCTGACTCACGAGTCTGCCCATCCCATGTCCTCAACTTCCAACCTGGTGAGGCATTCATGGTTCGTAACATCGCCAACATGGTCCCTGCTTATGACAAGGTCAGTTACAAATCGATCAACTAGTCGATTATTTCGCTCTGGAATTGTGTTTTTTAAAAATAAAGATGGAATTGAATTTTTACAGGTCAGGTACTCTGGAGTAGGAGCAGCCATTGAATACGCCGTTCTTCATCTTAAGGTGGAGAACATCGTTGTCATTGGCCACAGTGCTTGTGGAGGTATCAAAGGTCTCATGTCACTACCTGAAGATGGTAGTGAATCAACGTACGTCACTCTATAAATCTATTCATTCAAAACACTTATCCTTAACAGATGATTGATTAATAATCTAATATACGCAGTGCCTTTATTGAGGATTGGGTAAAAATTTGTTTACCTGCCAAGGCAAAGGTTCTGGCCGATCACGGAGGGAAAGAATTTGCACATCAATGCACAGCTTGTGAGAAGGTAAAATTCAAATTTAACTTTTTGATTATCAATTAATTACATATATAGCAGTATTTTATAATTGATGAAAAATGTTGCAGGAAGCTGTGAACGTTTCACTTGGAAATCTGCTTACGTATCCATT</genome_strand>
        <mrna_strand>AATTGCCTTACTCTCTCCCCTGCTCAAGCTTCCCTTAAGAAACCTACTCGTCCCGTTGCCTTCGCAAGGCTTGGCAACTCTTCTTCTTCTTCTTCTATTCCAAGTCTCATCAGAAACGAGCCCGTCTTTGCTGCCCCTACTCCCATCATCAACCCCATTGTG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGAGAAGAAATGGCAAAAGAATCCTACGATCAAGCCATTGCTGCACTCGAGAAACTCCTCAG....................................................................................................................................................................................................................................................................................................................................................................................CGAGAAAGCAGAACTTGGACCAGTTGCTGCAGCAAGAGTTGACCAGATCACTGCTGAATTGAAATCAGCAGACGGCGGCAAGGCATTCGACCCTGTTGAGCACATGAAAGCTGGCTTTATTCATTTCAAGACTGAGAAATATGA..................................................................................................CACAAACCCAGCCTTATATGGTGAGCTAGCAAAGGGCCAGAGCCCTAAG....................................................................................TTCATGGTTTTCGCGTGCTCTGACTCACGAGTCTGCCCATCCCATGTCCTCAACTTCCAACCTGGTGAGGCATTCATGGTTCGTAACATCGCCAACATGGTCCCTGCTTATGACAAG.....................................................................................GTCAGGTACTCTGGAGTAGGAGCAGCCATTGAATACGCCGTTCTTCATCTTAAGGTGGAGAACATCGTTGTCATTGGCCACAGTGCTTGTGGAGGTATCAAAGGTCTCATGTCACTACCTGAAGATGGTAGTGAATCAAC.............................................................................TGCCTTTATTGAGGATTGGGTAAAAATTTGTTTACCTGCCAAGGCAAAGGTTCTGGCCGATCACGGAGGGAAAGAATTTGCACATCAATGCACAGCTTGTGAGAAG................................................................................GAAGCTGTGAACGTTTCACTTGGAAATCTGCTTACGTATCCATT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0236E02-u8qcS/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E278895" ref_strand="+" ref_description="SGN-E278895 [cLER-2-I5]">
      <seq>aattgccttactctctcccctgctcaagcttcccttaagaaacctactcgtcccgttgccttcgcaaggcttggcaactcttcttcttcttcttctattccaagtctcatcagaaacgagcccgtctttgctgcccctactcccatcatcaaccccattgtgagagaagaaatggcaaaagaatcctacgatcaagccattgctgcactcgagaaactcctcagcgagaaagcagaacttggaccagttgctgcagcaagagttgaccagatcactgctgaattgaaatcagcagacggcggcaaggcattcgaccctgttgagcacatgaaagctggctttattcatttcaagactgagaaatatgacacaaacccagccttatatggtgagctagcaaagggccagagccctaagttcatggttttcgcgtgctctgactcacgagtctgcccatcccatg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0236E02-u8qcS/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0236E02.1" temp_strand="+" temp_description="C02HBa0236E02.1  AC215430.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0236E02 sequenced_by:kribb upload_account_name:korea">
        <position start="14721" stop="17534"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="15021" g_stop="15182" g_length="162"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="162" r_length="162" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="15183" i_stop="16379" i_length="1197">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.971" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="16380" g_stop="16441" g_length="62"/>
          <reference_exon_boundary r_type="cDNA" r_start="163" r_stop="224" r_length="62" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="16442" i_stop="16813" i_length="372">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="16814" g_stop="16957" g_length="144"/>
          <reference_exon_boundary r_type="cDNA" r_start="225" r_stop="368" r_length="144" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="16958" i_stop="17055" i_length="98">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="17056" g_stop="17104" g_length="49"/>
          <reference_exon_boundary r_type="cDNA" r_start="369" r_stop="417" r_length="49" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="17105" i_stop="17188" i_length="84">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.961" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="17189" g_stop="17234" g_length="46"/>
          <reference_exon_boundary r_type="cDNA" r_start="418" r_stop="463" r_length="46" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0236E02.1" gen_strand="+" ref_id="SGN-E278895" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>463</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0236E02.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E278895" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="15021" e_stop="15182"/>
          <exon e_start="16380" e_stop="16441"/>
          <exon e_start="16814" e_stop="16957"/>
          <exon e_start="17056" e_stop="17104"/>
          <exon e_start="17189" e_stop="17234"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AATTGCCTTACTCTCTCCCCTGCTCAAGCTTCCCTTAAGAAACCTACTCGTCCCGTTGCCTTCGCAAGGCTTGGCAACTCTTCTTCTTCTTCTTCTATTCCAAGTCTCATCAGAAACGAGCCCGTCTTTGCTGCCCCTACTCCCATCATCAACCCCATTGTGGTACGAATTTTTAACTTACATCACTGTATTTTAATCTGTTATAACAAGTTATTTATATTTGACGTTACTTAATTTATTTTTTAAGCAAGACATTTTTTTTGTCTTATCGTATTTTTTGTAACGACTTGTGTCCATGCATGCTAGTTCACGTGAAAATTCAATATTGGCATAGTTCTAAACTTTAGTTTCTAACCACCTTTATTATTGGTATTGTTATTTTTGGCCATGAATCTCCTGAAGTTAGGTGAATTGATCATGTCGCTCTAAATTGTACACGTCTATTGCGTGTACTCAATGACATATAATATATTATTGCAATCCTAAAATAAGTGTTATTTTAATTTATTTTGAACTCATTAAAATAAATATGATATTTTACTGAGTTACTTATATTTATTACTTTGATTTTTTTGAGTACTAATTTGTATTTTGAAACTTTTAAGATGACGAGAGGGTGGAAATAACAAATTAAATTTGAAAATGAACCAAAATAGAGGTGGCAATTAGGTAGAGGTTCTCGCAAAATGAATATTAAATATGTAGGGCCGTATTGTGAATTATGTGGATAATGTTTTTGCTTTCTATTTTTTTTTAAAAAAAATAATTATTACTTACAATAATCCAACGGGTATCCTCGTATGTGCCCATCCTACAAGTGATAAAATGATAAGTACCAGTCTACCATCAAGTTTGTAGGATAGAAACTATTTAGTATACATTGTTTTTGTCTTAATTTCTAGTTTTGGTATCCATCTAAATCGATACTCCATTATGTTAATTATTTCATTTCTTTCTTTTGACATCTACATCACTTTTTAATGTGGTTACCACTTGCTATAATCATACTTCACTTAGCATTTTATTTGAACTTAGTGAAAGTGAAATTTTTCCTAATAATTGGTCTAAAAATTGAAGAAGATTAAAGCCAAGAAATTGAGTTCTTCCTTCTTTCTTCCAACTTTGAAAGTACCGATAGATACTATCATATAAAAAGAAGAGGTGGTCTGACTAACTCAATGAAGTGAATTTTTCAAAAACATGCTCAGAAAAATGAGAAAAATGGAGTTTTTGAAAAGAAAAATTAACAGATATTTAAAGATAAATTTTTGAAATTTGGTTCAAAATTTATGGTCAAATATTAACTTATATTTATATATATACCTCTTCTAAAATGCTAATGAGAATTAGAATTTGCAGAGAGAAGAAATGGCAAAAGAATCCTACGATCAAGCCATTGCTGCACTCGAGAAACTCCTCAGGTTTGTACTCTCTCTACGACTCTACCTTCTAAATCACACTACTTTTTTCTCGATCAAGTGGGGCCCAAAAAATATACATACACCCACACATACGTAGACAAAAAAAATGTTAAAATTTGCGAATATGCAGAGAAAACATAATATAATCATGCAATGTTTACTCGTAAAATTCAATTTCCCGGCAATGAACATGTTACTTGGTTTCGAGTTCTCCAGATCTGCATTAATTTTACCATTCTATCATCATTTTTTTACCCCATATCTGCATTAATTTATCATGGTAATGGTGCTCAAACCACAAATCTTTTTTTTTTCTACCTGAAATATTGCTTCAATAATAATAATGGTCTAAATTATTTTCTGCAATTACAGCGAGAAAGCAGAACTTGGACCAGTTGCTGCAGCAAGAGTTGACCAGATCACTGCTGAATTGAAATCAGCAGACGGCGGCAAGGCATTCGACCCTGTTGAGCACATGAAAGCTGGCTTTATTCATTTCAAGACTGAGAAATATGAGTAAGCAAATTCATTCAAATTAAAATTTCTGCATATTTGATGTTGTAACATTATTAGTGTCTGATAATTTTTCCTGTTTTCTATTTATGTACCAACAGCACAAACCCAGCCTTATATGGTGAGCTAGCAAAGGGCCAGAGCCCTAAGGTACAAATTCCTTGTTAATTTGTTGTCTAATTTTATGATTTGTACGGTTTCTGATGAGTTCTATTGTCCTAAATGTGTAAACAGTTCATGGTTTTCGCGTGCTCTGACTCACGAGTCTGCCCATCCCATG</genome_strand>
        <mrna_strand>AATTGCCTTACTCTCTCCCCTGCTCAAGCTTCCCTTAAGAAACCTACTCGTCCCGTTGCCTTCGCAAGGCTTGGCAACTCTTCTTCTTCTTCTTCTATTCCAAGTCTCATCAGAAACGAGCCCGTCTTTGCTGCCCCTACTCCCATCATCAACCCCATTGTG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGAGAAGAAATGGCAAAAGAATCCTACGATCAAGCCATTGCTGCACTCGAGAAACTCCTCAG....................................................................................................................................................................................................................................................................................................................................................................................CGAGAAAGCAGAACTTGGACCAGTTGCTGCAGCAAGAGTTGACCAGATCACTGCTGAATTGAAATCAGCAGACGGCGGCAAGGCATTCGACCCTGTTGAGCACATGAAAGCTGGCTTTATTCATTTCAAGACTGAGAAATATGA..................................................................................................CACAAACCCAGCCTTATATGGTGAGCTAGCAAAGGGCCAGAGCCCTAAG....................................................................................TTCATGGTTTTCGCGTGCTCTGACTCACGAGTCTGCCCATCCCATG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0236E02-u8qcS/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E725585" ref_strand="+" ref_description="SGN-E725585 [LA04AE11]">
      <seq>ttgccttactctctcccctgctcaagcttcccttaagaaacctactcgtcccgttgccttcgcaaggcttggcaactcttcttcttcttcttctattccaagtctcatcagaaacgagcccgtctttgctgcccctactcccatcatcaaccccattgtgagagaagaaatggcaaaagaaatcctacgatcaagccattgctgcacttcgagaaactcctcagcgagaaagcagaacttggaccagttgctgcagcaagagttgaccagaacactgctgaattgaaatcagcagacggcggcaaggcattcgaccctgttgagcacacgaaagctggctttaattcctttcaggctgagaaatatgacacaaacccagc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0236E02-u8qcS/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0236E02.1" temp_strand="+" temp_description="C02HBa0236E02.1  AC215430.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0236E02 sequenced_by:kribb upload_account_name:korea">
        <position start="14723" stop="17257"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="15023" g_stop="15182" g_length="160"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="160" r_length="160" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="15183" i_stop="16379" i_length="1197">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.971" a_score="0.92"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="16380" g_stop="16441" g_length="62"/>
          <reference_exon_boundary r_type="cDNA" r_start="161" r_stop="224" r_length="64" r_score="0.935"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="16442" i_stop="16813" i_length="372">
            <donor d_prob="0.999" d_score="0.92"/>
            <acceptor a_prob="1.000" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="16814" g_stop="16957" g_length="144"/>
          <reference_exon_boundary r_type="cDNA" r_start="225" r_stop="368" r_length="144" r_score="0.951"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="16958" i_stop="17055" i_length="98">
            <donor d_prob="0.999" d_score="0.88"/>
            <acceptor a_prob="0.999" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="17056" g_stop="17067" g_length="12"/>
          <reference_exon_boundary r_type="cDNA" r_start="369" r_stop="380" r_length="12" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0236E02.1" gen_strand="+" ref_id="SGN-E725585" ref_strand="+">
        <total_alignment_score>0.970</total_alignment_score>
        <cumulative_length_of_scored_exons>378</cumulative_length_of_scored_exons>
        <coverage percentage="0.995" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0236E02.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E725585" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="15023" e_stop="15182"/>
          <exon e_start="16380" e_stop="16441"/>
          <exon e_start="16814" e_stop="16957"/>
          <exon e_start="17056" e_stop="17067"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTGCCTTACTCTCTCCCCTGCTCAAGCTTCCCTTAAGAAACCTACTCGTCCCGTTGCCTTCGCAAGGCTTGGCAACTCTTCTTCTTCTTCTTCTATTCCAAGTCTCATCAGAAACGAGCCCGTCTTTGCTGCCCCTACTCCCATCATCAACCCCATTGTGGTACGAATTTTTAACTTACATCACTGTATTTTAATCTGTTATAACAAGTTATTTATATTTGACGTTACTTAATTTATTTTTTAAGCAAGACATTTTTTTTGTCTTATCGTATTTTTTGTAACGACTTGTGTCCATGCATGCTAGTTCACGTGAAAATTCAATATTGGCATAGTTCTAAACTTTAGTTTCTAACCACCTTTATTATTGGTATTGTTATTTTTGGCCATGAATCTCCTGAAGTTAGGTGAATTGATCATGTCGCTCTAAATTGTACACGTCTATTGCGTGTACTCAATGACATATAATATATTATTGCAATCCTAAAATAAGTGTTATTTTAATTTATTTTGAACTCATTAAAATAAATATGATATTTTACTGAGTTACTTATATTTATTACTTTGATTTTTTTGAGTACTAATTTGTATTTTGAAACTTTTAAGATGACGAGAGGGTGGAAATAACAAATTAAATTTGAAAATGAACCAAAATAGAGGTGGCAATTAGGTAGAGGTTCTCGCAAAATGAATATTAAATATGTAGGGCCGTATTGTGAATTATGTGGATAATGTTTTTGCTTTCTATTTTTTTTTAAAAAAAATAATTATTACTTACAATAATCCAACGGGTATCCTCGTATGTGCCCATCCTACAAGTGATAAAATGATAAGTACCAGTCTACCATCAAGTTTGTAGGATAGAAACTATTTAGTATACATTGTTTTTGTCTTAATTTCTAGTTTTGGTATCCATCTAAATCGATACTCCATTATGTTAATTATTTCATTTCTTTCTTTTGACATCTACATCACTTTTTAATGTGGTTACCACTTGCTATAATCATACTTCACTTAGCATTTTATTTGAACTTAGTGAAAGTGAAATTTTTCCTAATAATTGGTCTAAAAATTGAAGAAGATTAAAGCCAAGAAATTGAGTTCTTCCTTCTTTCTTCCAACTTTGAAAGTACCGATAGATACTATCATATAAAAAGAAGAGGTGGTCTGACTAACTCAATGAAGTGAATTTTTCAAAAACATGCTCAGAAAAATGAGAAAAATGGAGTTTTTGAAAAGAAAAATTAACAGATATTTAAAGATAAATTTTTGAAATTTGGTTCAAAATTTATGGTCAAATATTAACTTATATTTATATATATACCTCTTCTAAAATGCTAATGAGAATTAGAATTTGCAGAGAGAAGAAATGGCAAAAG-AATCCTACGATCAAGCCATTGCTGCAC-TCGAGAAACTCCTCAGGTTTGTACTCTCTCTACGACTCTACCTTCTAAATCACACTACTTTTTTCTCGATCAAGTGGGGCCCAAAAAATATACATACACCCACACATACGTAGACAAAAAAAATGTTAAAATTTGCGAATATGCAGAGAAAACATAATATAATCATGCAATGTTTACTCGTAAAATTCAATTTCCCGGCAATGAACATGTTACTTGGTTTCGAGTTCTCCAGATCTGCATTAATTTTACCATTCTATCATCATTTTTTTACCCCATATCTGCATTAATTTATCATGGTAATGGTGCTCAAACCACAAATCTTTTTTTTTTCTACCTGAAATATTGCTTCAATAATAATAATGGTCTAAATTATTTTCTGCAATTACAGCGAGAAAGCAGAACTTGGACCAGTTGCTGCAGCAAGAGTTGACCAGATCACTGCTGAATTGAAATCAGCAGACGGCGGCAAGGCATTCGACCCTGTTGAGCACATGAAAGCTGGCTTTA-TTCATTTCAAGACTGAGAAATATGAGTAAGCAAATTCATTCAAATTAAAATTTCTGCATATTTGATGTTGTAACATTATTAGTGTCTGATAATTTTTCCTGTTTTCTATTTATGTACCAACAGCACAAACCCAGC</genome_strand>
        <mrna_strand>TTGCCTTACTCTCTCCCCTGCTCAAGCTTCCCTTAAGAAACCTACTCGTCCCGTTGCCTTCGCAAGGCTTGGCAACTCTTCTTCTTCTTCTTCTATTCCAAGTCTCATCAGAAACGAGCCCGTCTTTGCTGCCCCTACTCCCATCATCAACCCCATTGTG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGAGAAGAAATGGCAAAAGAAATCCTACGATCAAGCCATTGCTGCACTTCGAGAAACTCCTCAG....................................................................................................................................................................................................................................................................................................................................................................................CGAGAAAGCAGAACTTGGACCAGTTGCTGCAGCAAGAGTTGACCAGAACACTGCTGAATTGAAATCAGCAGACGGCGGCAAGGCATTCGACCCTGTTGAGCACACGAAAGCTGGCTTTAATTCCTTTC-AGGCTGAGAAATATGA..................................................................................................CACAAACCCAGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0236E02-u8qcS/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E283210" ref_strand="+" ref_description="SGN-E283210 [cLER-17-D24]">
      <seq>cttactctctcccctgctcaagcttcccttaagaaacctactcgtcccgttgccttcgcaaggcttggcaactcttcttcttcttcttctattccaagtctcatcagaaacgagcccgtctttgctgcccctactcccatcatcaaccccattgtgagagaagaaatggcaaaagaatcctacgatcaagccattgctgcactcgagaaactcctcagcgagaaagcagaacttggaccagttgctgcagcaagagttgaccagatcactgctgaattgaaatcagcagacggcggcaaggcattcgaccctgttgagcacatgaaagctggctttattcatttcaagactgagaaatatgacacaaacc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0236E02-u8qcS/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0236E02.1" temp_strand="+" temp_description="C02HBa0236E02.1  AC215430.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0236E02 sequenced_by:kribb upload_account_name:korea">
        <position start="14727" stop="17257"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="15027" g_stop="15182" g_length="156"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="156" r_length="156" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="15183" i_stop="16379" i_length="1197">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.971" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="16380" g_stop="16441" g_length="62"/>
          <reference_exon_boundary r_type="cDNA" r_start="157" r_stop="218" r_length="62" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="16442" i_stop="16813" i_length="372">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="16814" g_stop="16957" g_length="144"/>
          <reference_exon_boundary r_type="cDNA" r_start="219" r_stop="362" r_length="144" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="16958" i_stop="17055" i_length="98">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="17056" g_stop="17063" g_length="8"/>
          <reference_exon_boundary r_type="cDNA" r_start="363" r_stop="370" r_length="8" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0236E02.1" gen_strand="+" ref_id="SGN-E283210" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>370</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0236E02.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E283210" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="15027" e_stop="15182"/>
          <exon e_start="16380" e_stop="16441"/>
          <exon e_start="16814" e_stop="16957"/>
          <exon e_start="17056" e_stop="17063"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTTACTCTCTCCCCTGCTCAAGCTTCCCTTAAGAAACCTACTCGTCCCGTTGCCTTCGCAAGGCTTGGCAACTCTTCTTCTTCTTCTTCTATTCCAAGTCTCATCAGAAACGAGCCCGTCTTTGCTGCCCCTACTCCCATCATCAACCCCATTGTGGTACGAATTTTTAACTTACATCACTGTATTTTAATCTGTTATAACAAGTTATTTATATTTGACGTTACTTAATTTATTTTTTAAGCAAGACATTTTTTTTGTCTTATCGTATTTTTTGTAACGACTTGTGTCCATGCATGCTAGTTCACGTGAAAATTCAATATTGGCATAGTTCTAAACTTTAGTTTCTAACCACCTTTATTATTGGTATTGTTATTTTTGGCCATGAATCTCCTGAAGTTAGGTGAATTGATCATGTCGCTCTAAATTGTACACGTCTATTGCGTGTACTCAATGACATATAATATATTATTGCAATCCTAAAATAAGTGTTATTTTAATTTATTTTGAACTCATTAAAATAAATATGATATTTTACTGAGTTACTTATATTTATTACTTTGATTTTTTTGAGTACTAATTTGTATTTTGAAACTTTTAAGATGACGAGAGGGTGGAAATAACAAATTAAATTTGAAAATGAACCAAAATAGAGGTGGCAATTAGGTAGAGGTTCTCGCAAAATGAATATTAAATATGTAGGGCCGTATTGTGAATTATGTGGATAATGTTTTTGCTTTCTATTTTTTTTTAAAAAAAATAATTATTACTTACAATAATCCAACGGGTATCCTCGTATGTGCCCATCCTACAAGTGATAAAATGATAAGTACCAGTCTACCATCAAGTTTGTAGGATAGAAACTATTTAGTATACATTGTTTTTGTCTTAATTTCTAGTTTTGGTATCCATCTAAATCGATACTCCATTATGTTAATTATTTCATTTCTTTCTTTTGACATCTACATCACTTTTTAATGTGGTTACCACTTGCTATAATCATACTTCACTTAGCATTTTATTTGAACTTAGTGAAAGTGAAATTTTTCCTAATAATTGGTCTAAAAATTGAAGAAGATTAAAGCCAAGAAATTGAGTTCTTCCTTCTTTCTTCCAACTTTGAAAGTACCGATAGATACTATCATATAAAAAGAAGAGGTGGTCTGACTAACTCAATGAAGTGAATTTTTCAAAAACATGCTCAGAAAAATGAGAAAAATGGAGTTTTTGAAAAGAAAAATTAACAGATATTTAAAGATAAATTTTTGAAATTTGGTTCAAAATTTATGGTCAAATATTAACTTATATTTATATATATACCTCTTCTAAAATGCTAATGAGAATTAGAATTTGCAGAGAGAAGAAATGGCAAAAGAATCCTACGATCAAGCCATTGCTGCACTCGAGAAACTCCTCAGGTTTGTACTCTCTCTACGACTCTACCTTCTAAATCACACTACTTTTTTCTCGATCAAGTGGGGCCCAAAAAATATACATACACCCACACATACGTAGACAAAAAAAATGTTAAAATTTGCGAATATGCAGAGAAAACATAATATAATCATGCAATGTTTACTCGTAAAATTCAATTTCCCGGCAATGAACATGTTACTTGGTTTCGAGTTCTCCAGATCTGCATTAATTTTACCATTCTATCATCATTTTTTTACCCCATATCTGCATTAATTTATCATGGTAATGGTGCTCAAACCACAAATCTTTTTTTTTTCTACCTGAAATATTGCTTCAATAATAATAATGGTCTAAATTATTTTCTGCAATTACAGCGAGAAAGCAGAACTTGGACCAGTTGCTGCAGCAAGAGTTGACCAGATCACTGCTGAATTGAAATCAGCAGACGGCGGCAAGGCATTCGACCCTGTTGAGCACATGAAAGCTGGCTTTATTCATTTCAAGACTGAGAAATATGAGTAAGCAAATTCATTCAAATTAAAATTTCTGCATATTTGATGTTGTAACATTATTAGTGTCTGATAATTTTTCCTGTTTTCTATTTATGTACCAACAGCACAAACC</genome_strand>
        <mrna_strand>CTTACTCTCTCCCCTGCTCAAGCTTCCCTTAAGAAACCTACTCGTCCCGTTGCCTTCGCAAGGCTTGGCAACTCTTCTTCTTCTTCTTCTATTCCAAGTCTCATCAGAAACGAGCCCGTCTTTGCTGCCCCTACTCCCATCATCAACCCCATTGTG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGAGAAGAAATGGCAAAAGAATCCTACGATCAAGCCATTGCTGCACTCGAGAAACTCCTCAG....................................................................................................................................................................................................................................................................................................................................................................................CGAGAAAGCAGAACTTGGACCAGTTGCTGCAGCAAGAGTTGACCAGATCACTGCTGAATTGAAATCAGCAGACGGCGGCAAGGCATTCGACCCTGTTGAGCACATGAAAGCTGGCTTTATTCATTTCAAGACTGAGAAATATGA..................................................................................................CACAAACC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0236E02-u8qcS/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E731221" ref_strand="+" ref_description="SGN-E731221 [LA26CA04]">
      <seq>ctctctcccctgctcaagcttcccttaagaaacctactcgtcccgttgccttcgcaaggcttggcaactcttcttcttcttcttctattccaagtctcatcagaaacgagcccgtctttgctgcccctactcccatcatcaaccccattgtgagagaagaaatggcaaaagaatcctacgatcaagccattgctgcactcgagaaactcctcagcgagaaagcagaacttggaccagttgctgcagcaagagttgaccagatcactgctgaattgaaatcagcagacggcggcaaggcattcgaccctgttgagcacatgaaagctggctttattcatttcaagactgagaaatatgacacaaacccagccttatatggtgagctagcaaagggccagagccctaagttcatggttttcgcgtgctctgactcacgagtctgcccatcccatgtcctcaacttccaacctggtgaggcattcatggttcgtaacatcgccaacatggtccctgcttatgacaaggtcaggtactctggagtaggagcagccattgaatacgccgttcttcatcttaaggtggagaacatcgttgtcattggccacagtgcttgtggaggtatcaaaggtctcatgtcactacctgaagatggtagtgaatcaactgcctttattgaggattgggtaaaaatttgtttacctgccaaggcaaaggttctggccgatcacggagggaaagaatttgcacatcaatgcacagcttgtgagaagggagctgtgaacgtttcacttggaaatctgcttacg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0236E02-u8qcS/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0236E02.1" temp_strand="+" temp_description="C02HBa0236E02.1  AC215430.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0236E02 sequenced_by:kribb upload_account_name:korea">
        <position start="14731" stop="18129"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="15031" g_stop="15182" g_length="152"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="152" r_length="152" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="15183" i_stop="16379" i_length="1197">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.971" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="16380" g_stop="16441" g_length="62"/>
          <reference_exon_boundary r_type="cDNA" r_start="153" r_stop="214" r_length="62" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="16442" i_stop="16813" i_length="372">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="16814" g_stop="16957" g_length="144"/>
          <reference_exon_boundary r_type="cDNA" r_start="215" r_stop="358" r_length="144" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="16958" i_stop="17055" i_length="98">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="17056" g_stop="17104" g_length="49"/>
          <reference_exon_boundary r_type="cDNA" r_start="359" r_stop="407" r_length="49" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="17105" i_stop="17188" i_length="84">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.961" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="17189" g_stop="17305" g_length="117"/>
          <reference_exon_boundary r_type="cDNA" r_start="408" r_stop="524" r_length="117" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="17306" i_stop="17390" i_length="85">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.979" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="17391" g_stop="17530" g_length="140"/>
          <reference_exon_boundary r_type="cDNA" r_start="525" r_stop="664" r_length="140" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="17531" i_stop="17607" i_length="77">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.948" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="17608" g_stop="17713" g_length="106"/>
          <reference_exon_boundary r_type="cDNA" r_start="665" r_stop="770" r_length="106" r_score="1.000"/>
        </exon>
        <intron i_serial="7">
          <gDNA_intron_boundary i_start="17714" i_stop="17793" i_length="80">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="8">
          <gDNA_exon_boundary g_start="17794" g_stop="17828" g_length="35"/>
          <reference_exon_boundary r_type="cDNA" r_start="771" r_stop="805" r_length="35" r_score="0.971"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0236E02.1" gen_strand="+" ref_id="SGN-E731221" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>805</cumulative_length_of_scored_exons>
        <coverage percentage="0.999" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0236E02.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E731221" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="15031" e_stop="15182"/>
          <exon e_start="16380" e_stop="16441"/>
          <exon e_start="16814" e_stop="16957"/>
          <exon e_start="17056" e_stop="17104"/>
          <exon e_start="17189" e_stop="17305"/>
          <exon e_start="17391" e_stop="17530"/>
          <exon e_start="17608" e_stop="17713"/>
          <exon e_start="17794" e_stop="17828"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTCTCTCCCCTGCTCAAGCTTCCCTTAAGAAACCTACTCGTCCCGTTGCCTTCGCAAGGCTTGGCAACTCTTCTTCTTCTTCTTCTATTCCAAGTCTCATCAGAAACGAGCCCGTCTTTGCTGCCCCTACTCCCATCATCAACCCCATTGTGGTACGAATTTTTAACTTACATCACTGTATTTTAATCTGTTATAACAAGTTATTTATATTTGACGTTACTTAATTTATTTTTTAAGCAAGACATTTTTTTTGTCTTATCGTATTTTTTGTAACGACTTGTGTCCATGCATGCTAGTTCACGTGAAAATTCAATATTGGCATAGTTCTAAACTTTAGTTTCTAACCACCTTTATTATTGGTATTGTTATTTTTGGCCATGAATCTCCTGAAGTTAGGTGAATTGATCATGTCGCTCTAAATTGTACACGTCTATTGCGTGTACTCAATGACATATAATATATTATTGCAATCCTAAAATAAGTGTTATTTTAATTTATTTTGAACTCATTAAAATAAATATGATATTTTACTGAGTTACTTATATTTATTACTTTGATTTTTTTGAGTACTAATTTGTATTTTGAAACTTTTAAGATGACGAGAGGGTGGAAATAACAAATTAAATTTGAAAATGAACCAAAATAGAGGTGGCAATTAGGTAGAGGTTCTCGCAAAATGAATATTAAATATGTAGGGCCGTATTGTGAATTATGTGGATAATGTTTTTGCTTTCTATTTTTTTTTAAAAAAAATAATTATTACTTACAATAATCCAACGGGTATCCTCGTATGTGCCCATCCTACAAGTGATAAAATGATAAGTACCAGTCTACCATCAAGTTTGTAGGATAGAAACTATTTAGTATACATTGTTTTTGTCTTAATTTCTAGTTTTGGTATCCATCTAAATCGATACTCCATTATGTTAATTATTTCATTTCTTTCTTTTGACATCTACATCACTTTTTAATGTGGTTACCACTTGCTATAATCATACTTCACTTAGCATTTTATTTGAACTTAGTGAAAGTGAAATTTTTCCTAATAATTGGTCTAAAAATTGAAGAAGATTAAAGCCAAGAAATTGAGTTCTTCCTTCTTTCTTCCAACTTTGAAAGTACCGATAGATACTATCATATAAAAAGAAGAGGTGGTCTGACTAACTCAATGAAGTGAATTTTTCAAAAACATGCTCAGAAAAATGAGAAAAATGGAGTTTTTGAAAAGAAAAATTAACAGATATTTAAAGATAAATTTTTGAAATTTGGTTCAAAATTTATGGTCAAATATTAACTTATATTTATATATATACCTCTTCTAAAATGCTAATGAGAATTAGAATTTGCAGAGAGAAGAAATGGCAAAAGAATCCTACGATCAAGCCATTGCTGCACTCGAGAAACTCCTCAGGTTTGTACTCTCTCTACGACTCTACCTTCTAAATCACACTACTTTTTTCTCGATCAAGTGGGGCCCAAAAAATATACATACACCCACACATACGTAGACAAAAAAAATGTTAAAATTTGCGAATATGCAGAGAAAACATAATATAATCATGCAATGTTTACTCGTAAAATTCAATTTCCCGGCAATGAACATGTTACTTGGTTTCGAGTTCTCCAGATCTGCATTAATTTTACCATTCTATCATCATTTTTTTACCCCATATCTGCATTAATTTATCATGGTAATGGTGCTCAAACCACAAATCTTTTTTTTTTCTACCTGAAATATTGCTTCAATAATAATAATGGTCTAAATTATTTTCTGCAATTACAGCGAGAAAGCAGAACTTGGACCAGTTGCTGCAGCAAGAGTTGACCAGATCACTGCTGAATTGAAATCAGCAGACGGCGGCAAGGCATTCGACCCTGTTGAGCACATGAAAGCTGGCTTTATTCATTTCAAGACTGAGAAATATGAGTAAGCAAATTCATTCAAATTAAAATTTCTGCATATTTGATGTTGTAACATTATTAGTGTCTGATAATTTTTCCTGTTTTCTATTTATGTACCAACAGCACAAACCCAGCCTTATATGGTGAGCTAGCAAAGGGCCAGAGCCCTAAGGTACAAATTCCTTGTTAATTTGTTGTCTAATTTTATGATTTGTACGGTTTCTGATGAGTTCTATTGTCCTAAATGTGTAAACAGTTCATGGTTTTCGCGTGCTCTGACTCACGAGTCTGCCCATCCCATGTCCTCAACTTCCAACCTGGTGAGGCATTCATGGTTCGTAACATCGCCAACATGGTCCCTGCTTATGACAAGGTCAGTTACAAATCGATCAACTAGTCGATTATTTCGCTCTGGAATTGTGTTTTTTAAAAATAAAGATGGAATTGAATTTTTACAGGTCAGGTACTCTGGAGTAGGAGCAGCCATTGAATACGCCGTTCTTCATCTTAAGGTGGAGAACATCGTTGTCATTGGCCACAGTGCTTGTGGAGGTATCAAAGGTCTCATGTCACTACCTGAAGATGGTAGTGAATCAACGTACGTCACTCTATAAATCTATTCATTCAAAACACTTATCCTTAACAGATGATTGATTAATAATCTAATATACGCAGTGCCTTTATTGAGGATTGGGTAAAAATTTGTTTACCTGCCAAGGCAAAGGTTCTGGCCGATCACGGAGGGAAAGAATTTGCACATCAATGCACAGCTTGTGAGAAGGTAAAATTCAAATTTAACTTTTTGATTATCAATTAATTACATATATAGCAGTATTTTATAATTGATGAAAAATGTTGCAGGAAGCTGTGAACGTTTCACTTGGAAATCTGCTTAC</genome_strand>
        <mrna_strand>CTCTCTCCCCTGCTCAAGCTTCCCTTAAGAAACCTACTCGTCCCGTTGCCTTCGCAAGGCTTGGCAACTCTTCTTCTTCTTCTTCTATTCCAAGTCTCATCAGAAACGAGCCCGTCTTTGCTGCCCCTACTCCCATCATCAACCCCATTGTG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGAGAAGAAATGGCAAAAGAATCCTACGATCAAGCCATTGCTGCACTCGAGAAACTCCTCAG....................................................................................................................................................................................................................................................................................................................................................................................CGAGAAAGCAGAACTTGGACCAGTTGCTGCAGCAAGAGTTGACCAGATCACTGCTGAATTGAAATCAGCAGACGGCGGCAAGGCATTCGACCCTGTTGAGCACATGAAAGCTGGCTTTATTCATTTCAAGACTGAGAAATATGA..................................................................................................CACAAACCCAGCCTTATATGGTGAGCTAGCAAAGGGCCAGAGCCCTAAG....................................................................................TTCATGGTTTTCGCGTGCTCTGACTCACGAGTCTGCCCATCCCATGTCCTCAACTTCCAACCTGGTGAGGCATTCATGGTTCGTAACATCGCCAACATGGTCCCTGCTTATGACAAG.....................................................................................GTCAGGTACTCTGGAGTAGGAGCAGCCATTGAATACGCCGTTCTTCATCTTAAGGTGGAGAACATCGTTGTCATTGGCCACAGTGCTTGTGGAGGTATCAAAGGTCTCATGTCACTACCTGAAGATGGTAGTGAATCAAC.............................................................................TGCCTTTATTGAGGATTGGGTAAAAATTTGTTTACCTGCCAAGGCAAAGGTTCTGGCCGATCACGGAGGGAAAGAATTTGCACATCAATGCACAGCTTGTGAGAAG................................................................................GGAGCTGTGAACGTTTCACTTGGAAATCTGCTTAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0236E02-u8qcS/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E730737" ref_strand="+" ref_description="SGN-E730737 [LA25AB07]">
      <seq>cctttcccctgctcaagcttcccttaagaaacctactcgtcccgttgccttcgcaaggcttggcaactcttcttcttcttcttctattccaagtctcatcagaaacgagcccgtctttgctgcccctactcccatcatcaaccccattgtgagagaagaaatggcaaaagaatcctacgatcaagccattgctgcactcgagaaactcctcagcgagaaagcagaacttggaccagttgctgcagcaagagttgaccagatcactgctgaattgaaatcagcagacggcggcaaggcattcgaccctgttgagcacatgaaagctggctttattcatttcaagactgagaaatatgacacaaacccagccttatatggtgagctagcaaagggccagagccctaagttcatggttttcgcgtgctctgactcacgagtctgcccatcccatgtcctcaacttccaacctggtgaggcattcatggttcgtaacatcgccaacatggtccctgcttatgacaaggtcaggtactctggagtaggagcagccattgaatacgccgttcttcatcttaaggtggagaacatcgttgtcattggccacagtgcttgtggaggtatcaaaggtctcatgtcactacctgaagatggtagtgaatcaactgcctttattgaggattgggtaaaaatttgtttacctgccaaggcaaaggttctggccgatcacggagggaaagaatttgcacatcaatgcacagcttgtgagaaggaagctgtgaacgtttcacttggaaatctgcttacgtatccattcgtgagagaaggattggtgaagaaaacattggcattgaagggaggttactatgatttcgt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0236E02-u8qcS/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0236E02.1" temp_strand="+" temp_description="C02HBa0236E02.1  AC215430.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0236E02 sequenced_by:kribb upload_account_name:korea">
        <position start="14733" stop="18197"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="15032" g_stop="15182" g_length="151"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="151" r_length="151" r_score="0.987"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="15183" i_stop="16379" i_length="1197">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.971" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="16380" g_stop="16441" g_length="62"/>
          <reference_exon_boundary r_type="cDNA" r_start="152" r_stop="213" r_length="62" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="16442" i_stop="16813" i_length="372">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="16814" g_stop="16957" g_length="144"/>
          <reference_exon_boundary r_type="cDNA" r_start="214" r_stop="357" r_length="144" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="16958" i_stop="17055" i_length="98">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="17056" g_stop="17104" g_length="49"/>
          <reference_exon_boundary r_type="cDNA" r_start="358" r_stop="406" r_length="49" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="17105" i_stop="17188" i_length="84">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.961" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="17189" g_stop="17305" g_length="117"/>
          <reference_exon_boundary r_type="cDNA" r_start="407" r_stop="523" r_length="117" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="17306" i_stop="17390" i_length="85">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.979" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="17391" g_stop="17530" g_length="140"/>
          <reference_exon_boundary r_type="cDNA" r_start="524" r_stop="663" r_length="140" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="17531" i_stop="17607" i_length="77">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.948" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="17608" g_stop="17713" g_length="106"/>
          <reference_exon_boundary r_type="cDNA" r_start="664" r_stop="769" r_length="106" r_score="1.000"/>
        </exon>
        <intron i_serial="7">
          <gDNA_intron_boundary i_start="17714" i_stop="17793" i_length="80">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="8">
          <gDNA_exon_boundary g_start="17794" g_stop="17897" g_length="104"/>
          <reference_exon_boundary r_type="cDNA" r_start="770" r_stop="873" r_length="104" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0236E02.1" gen_strand="+" ref_id="SGN-E730737" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>873</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0236E02.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E730737" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="15032" e_stop="15182"/>
          <exon e_start="16380" e_stop="16441"/>
          <exon e_start="16814" e_stop="16957"/>
          <exon e_start="17056" e_stop="17104"/>
          <exon e_start="17189" e_stop="17305"/>
          <exon e_start="17391" e_stop="17530"/>
          <exon e_start="17608" e_stop="17713"/>
          <exon e_start="17794" e_stop="17897"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCTCTCCCCTGCTCAAGCTTCCCTTAAGAAACCTACTCGTCCCGTTGCCTTCGCAAGGCTTGGCAACTCTTCTTCTTCTTCTTCTATTCCAAGTCTCATCAGAAACGAGCCCGTCTTTGCTGCCCCTACTCCCATCATCAACCCCATTGTGGTACGAATTTTTAACTTACATCACTGTATTTTAATCTGTTATAACAAGTTATTTATATTTGACGTTACTTAATTTATTTTTTAAGCAAGACATTTTTTTTGTCTTATCGTATTTTTTGTAACGACTTGTGTCCATGCATGCTAGTTCACGTGAAAATTCAATATTGGCATAGTTCTAAACTTTAGTTTCTAACCACCTTTATTATTGGTATTGTTATTTTTGGCCATGAATCTCCTGAAGTTAGGTGAATTGATCATGTCGCTCTAAATTGTACACGTCTATTGCGTGTACTCAATGACATATAATATATTATTGCAATCCTAAAATAAGTGTTATTTTAATTTATTTTGAACTCATTAAAATAAATATGATATTTTACTGAGTTACTTATATTTATTACTTTGATTTTTTTGAGTACTAATTTGTATTTTGAAACTTTTAAGATGACGAGAGGGTGGAAATAACAAATTAAATTTGAAAATGAACCAAAATAGAGGTGGCAATTAGGTAGAGGTTCTCGCAAAATGAATATTAAATATGTAGGGCCGTATTGTGAATTATGTGGATAATGTTTTTGCTTTCTATTTTTTTTTAAAAAAAATAATTATTACTTACAATAATCCAACGGGTATCCTCGTATGTGCCCATCCTACAAGTGATAAAATGATAAGTACCAGTCTACCATCAAGTTTGTAGGATAGAAACTATTTAGTATACATTGTTTTTGTCTTAATTTCTAGTTTTGGTATCCATCTAAATCGATACTCCATTATGTTAATTATTTCATTTCTTTCTTTTGACATCTACATCACTTTTTAATGTGGTTACCACTTGCTATAATCATACTTCACTTAGCATTTTATTTGAACTTAGTGAAAGTGAAATTTTTCCTAATAATTGGTCTAAAAATTGAAGAAGATTAAAGCCAAGAAATTGAGTTCTTCCTTCTTTCTTCCAACTTTGAAAGTACCGATAGATACTATCATATAAAAAGAAGAGGTGGTCTGACTAACTCAATGAAGTGAATTTTTCAAAAACATGCTCAGAAAAATGAGAAAAATGGAGTTTTTGAAAAGAAAAATTAACAGATATTTAAAGATAAATTTTTGAAATTTGGTTCAAAATTTATGGTCAAATATTAACTTATATTTATATATATACCTCTTCTAAAATGCTAATGAGAATTAGAATTTGCAGAGAGAAGAAATGGCAAAAGAATCCTACGATCAAGCCATTGCTGCACTCGAGAAACTCCTCAGGTTTGTACTCTCTCTACGACTCTACCTTCTAAATCACACTACTTTTTTCTCGATCAAGTGGGGCCCAAAAAATATACATACACCCACACATACGTAGACAAAAAAAATGTTAAAATTTGCGAATATGCAGAGAAAACATAATATAATCATGCAATGTTTACTCGTAAAATTCAATTTCCCGGCAATGAACATGTTACTTGGTTTCGAGTTCTCCAGATCTGCATTAATTTTACCATTCTATCATCATTTTTTTACCCCATATCTGCATTAATTTATCATGGTAATGGTGCTCAAACCACAAATCTTTTTTTTTTCTACCTGAAATATTGCTTCAATAATAATAATGGTCTAAATTATTTTCTGCAATTACAGCGAGAAAGCAGAACTTGGACCAGTTGCTGCAGCAAGAGTTGACCAGATCACTGCTGAATTGAAATCAGCAGACGGCGGCAAGGCATTCGACCCTGTTGAGCACATGAAAGCTGGCTTTATTCATTTCAAGACTGAGAAATATGAGTAAGCAAATTCATTCAAATTAAAATTTCTGCATATTTGATGTTGTAACATTATTAGTGTCTGATAATTTTTCCTGTTTTCTATTTATGTACCAACAGCACAAACCCAGCCTTATATGGTGAGCTAGCAAAGGGCCAGAGCCCTAAGGTACAAATTCCTTGTTAATTTGTTGTCTAATTTTATGATTTGTACGGTTTCTGATGAGTTCTATTGTCCTAAATGTGTAAACAGTTCATGGTTTTCGCGTGCTCTGACTCACGAGTCTGCCCATCCCATGTCCTCAACTTCCAACCTGGTGAGGCATTCATGGTTCGTAACATCGCCAACATGGTCCCTGCTTATGACAAGGTCAGTTACAAATCGATCAACTAGTCGATTATTTCGCTCTGGAATTGTGTTTTTTAAAAATAAAGATGGAATTGAATTTTTACAGGTCAGGTACTCTGGAGTAGGAGCAGCCATTGAATACGCCGTTCTTCATCTTAAGGTGGAGAACATCGTTGTCATTGGCCACAGTGCTTGTGGAGGTATCAAAGGTCTCATGTCACTACCTGAAGATGGTAGTGAATCAACGTACGTCACTCTATAAATCTATTCATTCAAAACACTTATCCTTAACAGATGATTGATTAATAATCTAATATACGCAGTGCCTTTATTGAGGATTGGGTAAAAATTTGTTTACCTGCCAAGGCAAAGGTTCTGGCCGATCACGGAGGGAAAGAATTTGCACATCAATGCACAGCTTGTGAGAAGGTAAAATTCAAATTTAACTTTTTGATTATCAATTAATTACATATATAGCAGTATTTTATAATTGATGAAAAATGTTGCAGGAAGCTGTGAACGTTTCACTTGGAAATCTGCTTACGTATCCATTCGTGAGAGAAGGATTGGTGAAGAAAACATTGGCATTGAAGGGAGGTTACTATGATTTCGT</genome_strand>
        <mrna_strand>CCTTTCCCCTGCTCAAGCTTCCCTTAAGAAACCTACTCGTCCCGTTGCCTTCGCAAGGCTTGGCAACTCTTCTTCTTCTTCTTCTATTCCAAGTCTCATCAGAAACGAGCCCGTCTTTGCTGCCCCTACTCCCATCATCAACCCCATTGTG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGAGAAGAAATGGCAAAAGAATCCTACGATCAAGCCATTGCTGCACTCGAGAAACTCCTCAG....................................................................................................................................................................................................................................................................................................................................................................................CGAGAAAGCAGAACTTGGACCAGTTGCTGCAGCAAGAGTTGACCAGATCACTGCTGAATTGAAATCAGCAGACGGCGGCAAGGCATTCGACCCTGTTGAGCACATGAAAGCTGGCTTTATTCATTTCAAGACTGAGAAATATGA..................................................................................................CACAAACCCAGCCTTATATGGTGAGCTAGCAAAGGGCCAGAGCCCTAAG....................................................................................TTCATGGTTTTCGCGTGCTCTGACTCACGAGTCTGCCCATCCCATGTCCTCAACTTCCAACCTGGTGAGGCATTCATGGTTCGTAACATCGCCAACATGGTCCCTGCTTATGACAAG.....................................................................................GTCAGGTACTCTGGAGTAGGAGCAGCCATTGAATACGCCGTTCTTCATCTTAAGGTGGAGAACATCGTTGTCATTGGCCACAGTGCTTGTGGAGGTATCAAAGGTCTCATGTCACTACCTGAAGATGGTAGTGAATCAAC.............................................................................TGCCTTTATTGAGGATTGGGTAAAAATTTGTTTACCTGCCAAGGCAAAGGTTCTGGCCGATCACGGAGGGAAAGAATTTGCACATCAATGCACAGCTTGTGAGAAG................................................................................GAAGCTGTGAACGTTTCACTTGGAAATCTGCTTACGTATCCATTCGTGAGAGAAGGATTGGTGAAGAAAACATTGGCATTGAAGGGAGGTTACTATGATTTCGT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0236E02-u8qcS/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E365447" ref_strand="+" ref_description="SGN-E365447 [cLPT-2-K22]">
      <seq>gaggctcaagccttcccttaagaaacctactcgtcccgttgccttcgcaaggcttggcaactcttcttcttcttcttcttcttctattccaagtctcatcagaaaccagccccgtctttgctgcccctacctcccatcatcaaccccattgtgagagaagaaatggcaaaagaatcctaccgatcaggccgttgctgcacctcgagaaactcctcagcgagaaagcagaacttggaccagttgctgcagcaagagttgaccagatcacctgctgaattgaaatcagcagatggcggcaaggcattcgacccctgttgagccaccatgaaagctggctttattcatttcaagactgagaaatatgatacaaacccagccttatatggtgaactagcaaagggccagagcccaaagttcatggttttcgcgtgcctctgactcacgagtgtgcccatcccatgtcctcaacttccaacctggtgaggcattcatggttcgtaacatcgccaacatggtccctgcttatgacaaggtcaggtactctggagtaggagcagccattgaatacgccgttcttcatctt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0236E02-u8qcS/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0236E02.1" temp_strand="+" temp_description="C02HBa0236E02.1  AC215430.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0236E02 sequenced_by:kribb upload_account_name:korea">
        <position start="14742" stop="17741"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="15039" g_stop="15182" g_length="144"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="153" r_length="153" r_score="0.847"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="15183" i_stop="16379" i_length="1197">
            <donor d_prob="1.000" d_score="0.90"/>
            <acceptor a_prob="0.971" a_score="0.88"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="16380" g_stop="16441" g_length="62"/>
          <reference_exon_boundary r_type="cDNA" r_start="154" r_stop="217" r_length="64" r_score="0.903"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="16442" i_stop="16813" i_length="372">
            <donor d_prob="0.999" d_score="0.88"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="16814" g_stop="16957" g_length="144"/>
          <reference_exon_boundary r_type="cDNA" r_start="218" r_stop="365" r_length="148" r_score="0.938"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="16958" i_stop="17055" i_length="98">
            <donor d_prob="0.999" d_score="0.92"/>
            <acceptor a_prob="0.999" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="17056" g_stop="17104" g_length="49"/>
          <reference_exon_boundary r_type="cDNA" r_start="366" r_stop="414" r_length="49" r_score="0.939"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="17105" i_stop="17188" i_length="84">
            <donor d_prob="1.000" d_score="0.94"/>
            <acceptor a_prob="0.961" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="17189" g_stop="17305" g_length="117"/>
          <reference_exon_boundary r_type="cDNA" r_start="415" r_stop="532" r_length="118" r_score="0.974"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="17306" i_stop="17390" i_length="85">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.979" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="17391" g_stop="17441" g_length="51"/>
          <reference_exon_boundary r_type="cDNA" r_start="533" r_stop="583" r_length="51" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0236E02.1" gen_strand="+" ref_id="SGN-E365447" ref_strand="+">
        <total_alignment_score>0.923</total_alignment_score>
        <cumulative_length_of_scored_exons>567</cumulative_length_of_scored_exons>
        <coverage percentage="0.973" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0236E02.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E365447" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="15039" e_stop="15182"/>
          <exon e_start="16380" e_stop="16441"/>
          <exon e_start="16814" e_stop="16957"/>
          <exon e_start="17056" e_stop="17104"/>
          <exon e_start="17189" e_stop="17305"/>
          <exon e_start="17391" e_stop="17441"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCTGCTCAAG-CTTCCCTTAAGAAACCTACTCGTCCCGTTGCCTTCGCAAGGCTTGGCAA-----CT-CTTCTTCTTCTTCTTCTATTCCAAGTCTCATCAGAAACGAGCCC-GTCTTTGCTGCCCCTA-CTCCCATCATCAACCCCATTGTGGTACGAATTTTTAACTTACATCACTGTATTTTAATCTGTTATAACAAGTTATTTATATTTGACGTTACTTAATTTATTTTTTAAGCAAGACATTTTTTTTGTCTTATCGTATTTTTTGTAACGACTTGTGTCCATGCATGCTAGTTCACGTGAAAATTCAATATTGGCATAGTTCTAAACTTTAGTTTCTAACCACCTTTATTATTGGTATTGTTATTTTTGGCCATGAATCTCCTGAAGTTAGGTGAATTGATCATGTCGCTCTAAATTGTACACGTCTATTGCGTGTACTCAATGACATATAATATATTATTGCAATCCTAAAATAAGTGTTATTTTAATTTATTTTGAACTCATTAAAATAAATATGATATTTTACTGAGTTACTTATATTTATTACTTTGATTTTTTTGAGTACTAATTTGTATTTTGAAACTTTTAAGATGACGAGAGGGTGGAAATAACAAATTAAATTTGAAAATGAACCAAAATAGAGGTGGCAATTAGGTAGAGGTTCTCGCAAAATGAATATTAAATATGTAGGGCCGTATTGTGAATTATGTGGATAATGTTTTTGCTTTCTATTTTTTTTTAAAAAAAATAATTATTACTTACAATAATCCAACGGGTATCCTCGTATGTGCCCATCCTACAAGTGATAAAATGATAAGTACCAGTCTACCATCAAGTTTGTAGGATAGAAACTATTTAGTATACATTGTTTTTGTCTTAATTTCTAGTTTTGGTATCCATCTAAATCGATACTCCATTATGTTAATTATTTCATTTCTTTCTTTTGACATCTACATCACTTTTTAATGTGGTTACCACTTGCTATAATCATACTTCACTTAGCATTTTATTTGAACTTAGTGAAAGTGAAATTTTTCCTAATAATTGGTCTAAAAATTGAAGAAGATTAAAGCCAAGAAATTGAGTTCTTCCTTCTTTCTTCCAACTTTGAAAGTACCGATAGATACTATCATATAAAAAGAAGAGGTGGTCTGACTAACTCAATGAAGTGAATTTTTCAAAAACATGCTCAGAAAAATGAGAAAAATGGAGTTTTTGAAAAGAAAAATTAACAGATATTTAAAGATAAATTTTTGAAATTTGGTTCAAAATTTATGGTCAAATATTAACTTATATTTATATATATACCTCTTCTAAAATGCTAATGAGAATTAGAATTTGCAGAGAGAAGAAATGGCAAAAGAATCCTA-CGATCAAGCCATTGCTGCA-CTCGAGAAACTCCTCAGGTTTGTACTCTCTCTACGACTCTACCTTCTAAATCACACTACTTTTTTCTCGATCAAGTGGGGCCCAAAAAATATACATACACCCACACATACGTAGACAAAAAAAATGTTAAAATTTGCGAATATGCAGAGAAAACATAATATAATCATGCAATGTTTACTCGTAAAATTCAATTTCCCGGCAATGAACATGTTACTTGGTTTCGAGTTCTCCAGATCTGCATTAATTTTACCATTCTATCATCATTTTTTTACCCCATATCTGCATTAATTTATCATGGTAATGGTGCTCAAACCACAAATCTTTTTTTTTTCTACCTGAAATATTGCTTCAATAATAATAATGGTCTAAATTATTTTCTGCAATTACAGCGAGAAAGCAGAACTTGGACCAGTTGCTGCAGCAAGAGTTGACCAGATCA-CTGCTGAATTGAAATCAGCAGACGGCGGCAAGGCATTCGA-CCCTGTTGAG-CA-CATGAAAGCTGGCTTTATTCATTTCAAGACTGAGAAATATGAGTAAGCAAATTCATTCAAATTAAAATTTCTGCATATTTGATGTTGTAACATTATTAGTGTCTGATAATTTTTCCTGTTTTCTATTTATGTACCAACAGCACAAACCCAGCCTTATATGGTGAGCTAGCAAAGGGCCAGAGCCCTAAGGTACAAATTCCTTGTTAATTTGTTGTCTAATTTTATGATTTGTACGGTTTCTGATGAGTTCTATTGTCCTAAATGTGTAAACAGTTCATGGTTTTCGCGTG-CTCTGACTCACGAGTCTGCCCATCCCATGTCCTCAACTTCCAACCTGGTGAGGCATTCATGGTTCGTAACATCGCCAACATGGTCCCTGCTTATGACAAGGTCAGTTACAAATCGATCAACTAGTCGATTATTTCGCTCTGGAATTGTGTTTTTTAAAAATAAAGATGGAATTGAATTTTTACAGGTCAGGTACTCTGGAGTAGGAGCAGCCATTGAATACGCCGTTCTTCATCTT</genome_strand>
        <mrna_strand>GAGGCTCAAGCCTTCCCTTAAGAAACCTACTCGTCCCGTTGCCTTCGCAAGGCTTGGCAACTCTTCTTCTTCTTCTTCTTCTTCTATTCCAAGTCTCATCAGAAACCAGCCCCGTCTTTGCTGCCCCTACCTCCCATCATCAACCCCATTGTG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGAGAAGAAATGGCAAAAGAATCCTACCGATCAGGCCGTTGCTGCACCTCGAGAAACTCCTCAG....................................................................................................................................................................................................................................................................................................................................................................................CGAGAAAGCAGAACTTGGACCAGTTGCTGCAGCAAGAGTTGACCAGATCACCTGCTGAATTGAAATCAGCAGATGGCGGCAAGGCATTCGACCCCTGTTGAGCCACCATGAAAGCTGGCTTTATTCATTTCAAGACTGAGAAATATGA..................................................................................................TACAAACCCAGCCTTATATGGTGAACTAGCAAAGGGCCAGAGCCCAAAG....................................................................................TTCATGGTTTTCGCGTGCCTCTGACTCACGAGTGTGCCCATCCCATGTCCTCAACTTCCAACCTGGTGAGGCATTCATGGTTCGTAACATCGCCAACATGGTCCCTGCTTATGACAAG.....................................................................................GTCAGGTACTCTGGAGTAGGAGCAGCCATTGAATACGCCGTTCTTCATCTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0236E02-u8qcS/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E740848" ref_strand="+" ref_description="SGN-E740848 [LC23AF03]">
      <seq>cgcttttggcttctcccacccctgcgggggcttcggttaggaaattctactctgtcctgttgccttttaaaggcttggcaactcttcttcttcttcttctattccaagtctcatcagaaacgagcccgtctttgctgcccctactcccatcatcaaccccattgtgagagaagaaatggcaaaagaatcctacgatcaagccattgctgcactcgagaaactcctcagcgagaaagcagaacttggaccagttgctgcagcaagagttgaccagatcactgctgaattgaaatcagcagacggcggcaaggcattcgaccctgttgagcacatgaaagctggctttattcatttcaagactgagaaatatgacacaaacccagccttatatggtgagctagcaaagggccagagccctaagttcatggttttcgcgtgctctgactcacgagtctgcccatcccatgtcctcaacttccaacctggtgaggcattcatggttcgtaacatcgccaacatggtccctgcttatgacaaggtcaggtactctggagtaggagcagccattgaatacgccgttcttcatcttaaggtggagaacatcgttgtcattggccacagtgcttgtggaggtatcaaaggtctcatgtcactacctgaagatggtagtgaatcaactgcctttattgaggattgggtaaaaatttgtttacctgccaaggcaaaggttctggccgatcacggaggggaagaatttgcacatcaatgcacagcttgtgagaaggaacctgtgaacgtttcact</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0236E02-u8qcS/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0236E02.1" temp_strand="+" temp_description="C02HBa0236E02.1  AC215430.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0236E02 sequenced_by:kribb upload_account_name:korea">
        <position start="14786" stop="18113"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="15064" g_stop="15182" g_length="119"/>
          <reference_exon_boundary r_type="cDNA" r_start="47" r_stop="166" r_length="120" r_score="0.950"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="15183" i_stop="16379" i_length="1197">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.971" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="16380" g_stop="16441" g_length="62"/>
          <reference_exon_boundary r_type="cDNA" r_start="167" r_stop="228" r_length="62" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="16442" i_stop="16813" i_length="372">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="16814" g_stop="16957" g_length="144"/>
          <reference_exon_boundary r_type="cDNA" r_start="229" r_stop="372" r_length="144" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="16958" i_stop="17055" i_length="98">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="17056" g_stop="17104" g_length="49"/>
          <reference_exon_boundary r_type="cDNA" r_start="373" r_stop="421" r_length="49" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="17105" i_stop="17188" i_length="84">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.961" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="17189" g_stop="17305" g_length="117"/>
          <reference_exon_boundary r_type="cDNA" r_start="422" r_stop="538" r_length="117" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="17306" i_stop="17390" i_length="85">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.979" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="17391" g_stop="17530" g_length="140"/>
          <reference_exon_boundary r_type="cDNA" r_start="539" r_stop="678" r_length="140" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="17531" i_stop="17607" i_length="77">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.948" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="17608" g_stop="17713" g_length="106"/>
          <reference_exon_boundary r_type="cDNA" r_start="679" r_stop="784" r_length="106" r_score="0.991"/>
        </exon>
        <intron i_serial="7">
          <gDNA_intron_boundary i_start="17714" i_stop="17793" i_length="80">
            <donor d_prob="1.000" d_score="0.98"/>
            <acceptor a_prob="0.997" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="8">
          <gDNA_exon_boundary g_start="17794" g_stop="17813" g_length="20"/>
          <reference_exon_boundary r_type="cDNA" r_start="785" r_stop="804" r_length="20" r_score="0.950"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0236E02.1" gen_strand="+" ref_id="SGN-E740848" ref_strand="+">
        <total_alignment_score>0.990</total_alignment_score>
        <cumulative_length_of_scored_exons>757</cumulative_length_of_scored_exons>
        <coverage percentage="0.942" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0236E02.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E740848" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="15064" e_stop="15182"/>
          <exon e_start="16380" e_stop="16441"/>
          <exon e_start="16814" e_stop="16957"/>
          <exon e_start="17056" e_stop="17104"/>
          <exon e_start="17189" e_stop="17305"/>
          <exon e_start="17391" e_stop="17530"/>
          <exon e_start="17608" e_stop="17713"/>
          <exon e_start="17794" e_stop="17813"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTACTC-GTCCCGTTGCCTTCGCAAGGCTTGGCAACTCTTCTTCTTCTTCTTCTATTCCAAGTCTCATCAGAAACGAGCCCGTCTTTGCTGCCCCTACTCCCATCATCAACCCCATTGTGGTACGAATTTTTAACTTACATCACTGTATTTTAATCTGTTATAACAAGTTATTTATATTTGACGTTACTTAATTTATTTTTTAAGCAAGACATTTTTTTTGTCTTATCGTATTTTTTGTAACGACTTGTGTCCATGCATGCTAGTTCACGTGAAAATTCAATATTGGCATAGTTCTAAACTTTAGTTTCTAACCACCTTTATTATTGGTATTGTTATTTTTGGCCATGAATCTCCTGAAGTTAGGTGAATTGATCATGTCGCTCTAAATTGTACACGTCTATTGCGTGTACTCAATGACATATAATATATTATTGCAATCCTAAAATAAGTGTTATTTTAATTTATTTTGAACTCATTAAAATAAATATGATATTTTACTGAGTTACTTATATTTATTACTTTGATTTTTTTGAGTACTAATTTGTATTTTGAAACTTTTAAGATGACGAGAGGGTGGAAATAACAAATTAAATTTGAAAATGAACCAAAATAGAGGTGGCAATTAGGTAGAGGTTCTCGCAAAATGAATATTAAATATGTAGGGCCGTATTGTGAATTATGTGGATAATGTTTTTGCTTTCTATTTTTTTTTAAAAAAAATAATTATTACTTACAATAATCCAACGGGTATCCTCGTATGTGCCCATCCTACAAGTGATAAAATGATAAGTACCAGTCTACCATCAAGTTTGTAGGATAGAAACTATTTAGTATACATTGTTTTTGTCTTAATTTCTAGTTTTGGTATCCATCTAAATCGATACTCCATTATGTTAATTATTTCATTTCTTTCTTTTGACATCTACATCACTTTTTAATGTGGTTACCACTTGCTATAATCATACTTCACTTAGCATTTTATTTGAACTTAGTGAAAGTGAAATTTTTCCTAATAATTGGTCTAAAAATTGAAGAAGATTAAAGCCAAGAAATTGAGTTCTTCCTTCTTTCTTCCAACTTTGAAAGTACCGATAGATACTATCATATAAAAAGAAGAGGTGGTCTGACTAACTCAATGAAGTGAATTTTTCAAAAACATGCTCAGAAAAATGAGAAAAATGGAGTTTTTGAAAAGAAAAATTAACAGATATTTAAAGATAAATTTTTGAAATTTGGTTCAAAATTTATGGTCAAATATTAACTTATATTTATATATATACCTCTTCTAAAATGCTAATGAGAATTAGAATTTGCAGAGAGAAGAAATGGCAAAAGAATCCTACGATCAAGCCATTGCTGCACTCGAGAAACTCCTCAGGTTTGTACTCTCTCTACGACTCTACCTTCTAAATCACACTACTTTTTTCTCGATCAAGTGGGGCCCAAAAAATATACATACACCCACACATACGTAGACAAAAAAAATGTTAAAATTTGCGAATATGCAGAGAAAACATAATATAATCATGCAATGTTTACTCGTAAAATTCAATTTCCCGGCAATGAACATGTTACTTGGTTTCGAGTTCTCCAGATCTGCATTAATTTTACCATTCTATCATCATTTTTTTACCCCATATCTGCATTAATTTATCATGGTAATGGTGCTCAAACCACAAATCTTTTTTTTTTCTACCTGAAATATTGCTTCAATAATAATAATGGTCTAAATTATTTTCTGCAATTACAGCGAGAAAGCAGAACTTGGACCAGTTGCTGCAGCAAGAGTTGACCAGATCACTGCTGAATTGAAATCAGCAGACGGCGGCAAGGCATTCGACCCTGTTGAGCACATGAAAGCTGGCTTTATTCATTTCAAGACTGAGAAATATGAGTAAGCAAATTCATTCAAATTAAAATTTCTGCATATTTGATGTTGTAACATTATTAGTGTCTGATAATTTTTCCTGTTTTCTATTTATGTACCAACAGCACAAACCCAGCCTTATATGGTGAGCTAGCAAAGGGCCAGAGCCCTAAGGTACAAATTCCTTGTTAATTTGTTGTCTAATTTTATGATTTGTACGGTTTCTGATGAGTTCTATTGTCCTAAATGTGTAAACAGTTCATGGTTTTCGCGTGCTCTGACTCACGAGTCTGCCCATCCCATGTCCTCAACTTCCAACCTGGTGAGGCATTCATGGTTCGTAACATCGCCAACATGGTCCCTGCTTATGACAAGGTCAGTTACAAATCGATCAACTAGTCGATTATTTCGCTCTGGAATTGTGTTTTTTAAAAATAAAGATGGAATTGAATTTTTACAGGTCAGGTACTCTGGAGTAGGAGCAGCCATTGAATACGCCGTTCTTCATCTTAAGGTGGAGAACATCGTTGTCATTGGCCACAGTGCTTGTGGAGGTATCAAAGGTCTCATGTCACTACCTGAAGATGGTAGTGAATCAACGTACGTCACTCTATAAATCTATTCATTCAAAACACTTATCCTTAACAGATGATTGATTAATAATCTAATATACGCAGTGCCTTTATTGAGGATTGGGTAAAAATTTGTTTACCTGCCAAGGCAAAGGTTCTGGCCGATCACGGAGGGAAAGAATTTGCACATCAATGCACAGCTTGTGAGAAGGTAAAATTCAAATTTAACTTTTTGATTATCAATTAATTACATATATAGCAGTATTTTATAATTGATGAAAAATGTTGCAGGAAGCTGTGAACGTTTCACT</genome_strand>
        <mrna_strand>CTACTCTGTCCTGTTGCCTTTTAAAGGCTTGGCAACTCTTCTTCTTCTTCTTCTATTCCAAGTCTCATCAGAAACGAGCCCGTCTTTGCTGCCCCTACTCCCATCATCAACCCCATTGTG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGAGAAGAAATGGCAAAAGAATCCTACGATCAAGCCATTGCTGCACTCGAGAAACTCCTCAG....................................................................................................................................................................................................................................................................................................................................................................................CGAGAAAGCAGAACTTGGACCAGTTGCTGCAGCAAGAGTTGACCAGATCACTGCTGAATTGAAATCAGCAGACGGCGGCAAGGCATTCGACCCTGTTGAGCACATGAAAGCTGGCTTTATTCATTTCAAGACTGAGAAATATGA..................................................................................................CACAAACCCAGCCTTATATGGTGAGCTAGCAAAGGGCCAGAGCCCTAAG....................................................................................TTCATGGTTTTCGCGTGCTCTGACTCACGAGTCTGCCCATCCCATGTCCTCAACTTCCAACCTGGTGAGGCATTCATGGTTCGTAACATCGCCAACATGGTCCCTGCTTATGACAAG.....................................................................................GTCAGGTACTCTGGAGTAGGAGCAGCCATTGAATACGCCGTTCTTCATCTTAAGGTGGAGAACATCGTTGTCATTGGCCACAGTGCTTGTGGAGGTATCAAAGGTCTCATGTCACTACCTGAAGATGGTAGTGAATCAAC.............................................................................TGCCTTTATTGAGGATTGGGTAAAAATTTGTTTACCTGCCAAGGCAAAGGTTCTGGCCGATCACGGAGGGGAAGAATTTGCACATCAATGCACAGCTTGTGAGAAG................................................................................GAACCTGTGAACGTTTCACT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0236E02-u8qcS/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E738930" ref_strand="+" ref_description="SGN-E738930 [LC15BH12]">
      <seq>cgcgtttgttgccttcgcaaggcttggcaactcttcttcttcttcttctattccaagtctcatcagaaacgagcccgtctttgctgcccctactcccatcatcaaccccattgtgagagaagaaatggcaaaagaatcctacgatcaagccattgctgcactcgagaaactcctcagcgagaaagcagaacttggaccagttgctgcagcaagagttgaccagatcactgctgaattgaaatcagcagacggcggcaaggcattcgaccctgttgagcacatgaaagctggctttattcatttcaagactgagaaatatgacacaaacccagccttatatggtgagctagcaaagggccagagccctaagttcatggttttcgcgtgctctgactcacgagtctgcccatcccatgtcctcaacttccaacctggtgaggcattcatggttcgtaacatcgccaacatggtccctgcttatgacaaggtcaggtactctggagtaggagcagccattgaatacgccgttcttcatcttaaggtggagaacatcgttgtcattggccacagtgcttgtggaggtatcaaaggtctcatgtcactacctgaagatggtagtgaatcaactgcctttattgaggattgggtaaaaatttgtttacctgccaaggcaaaggttctggccgatcacggagggaaagaatttgcacatcaatgcacagcttgtgagaaggaagctgtgaacgtttcacttggaaatctgcttacgtatccattcgtgaaagaaggattggtgaagaaaacattggcattgaagggaggttactatgatttcgtgaagggt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0236E02-u8qcS/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0236E02.1" temp_strand="+" temp_description="C02HBa0236E02.1  AC215430.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0236E02 sequenced_by:kribb upload_account_name:korea">
        <position start="14775" stop="18204"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="15067" g_stop="15182" g_length="116"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="115" r_length="115" r_score="0.966"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="15183" i_stop="16379" i_length="1197">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.971" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="16380" g_stop="16441" g_length="62"/>
          <reference_exon_boundary r_type="cDNA" r_start="116" r_stop="177" r_length="62" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="16442" i_stop="16813" i_length="372">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="16814" g_stop="16957" g_length="144"/>
          <reference_exon_boundary r_type="cDNA" r_start="178" r_stop="321" r_length="144" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="16958" i_stop="17055" i_length="98">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="17056" g_stop="17104" g_length="49"/>
          <reference_exon_boundary r_type="cDNA" r_start="322" r_stop="370" r_length="49" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="17105" i_stop="17188" i_length="84">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.961" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="17189" g_stop="17305" g_length="117"/>
          <reference_exon_boundary r_type="cDNA" r_start="371" r_stop="487" r_length="117" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="17306" i_stop="17390" i_length="85">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.979" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="17391" g_stop="17530" g_length="140"/>
          <reference_exon_boundary r_type="cDNA" r_start="488" r_stop="627" r_length="140" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="17531" i_stop="17607" i_length="77">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.948" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="17608" g_stop="17713" g_length="106"/>
          <reference_exon_boundary r_type="cDNA" r_start="628" r_stop="733" r_length="106" r_score="1.000"/>
        </exon>
        <intron i_serial="7">
          <gDNA_intron_boundary i_start="17714" i_stop="17793" i_length="80">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="8">
          <gDNA_exon_boundary g_start="17794" g_stop="17904" g_length="111"/>
          <reference_exon_boundary r_type="cDNA" r_start="734" r_stop="844" r_length="111" r_score="0.991"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0236E02.1" gen_strand="+" ref_id="SGN-E738930" ref_strand="+">
        <total_alignment_score>0.994</total_alignment_score>
        <cumulative_length_of_scored_exons>845</cumulative_length_of_scored_exons>
        <coverage percentage="1.001" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0236E02.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E738930" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="15067" e_stop="15182"/>
          <exon e_start="16380" e_stop="16441"/>
          <exon e_start="16814" e_stop="16957"/>
          <exon e_start="17056" e_stop="17104"/>
          <exon e_start="17189" e_stop="17305"/>
          <exon e_start="17391" e_stop="17530"/>
          <exon e_start="17608" e_stop="17713"/>
          <exon e_start="17794" e_stop="17904"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTCGTCCCGTTGCCTTCGCAAGGCTTGGCAACTCTTCTTCTTCTTCTTCTATTCCAAGTCTCATCAGAAACGAGCCCGTCTTTGCTGCCCCTACTCCCATCATCAACCCCATTGTGGTACGAATTTTTAACTTACATCACTGTATTTTAATCTGTTATAACAAGTTATTTATATTTGACGTTACTTAATTTATTTTTTAAGCAAGACATTTTTTTTGTCTTATCGTATTTTTTGTAACGACTTGTGTCCATGCATGCTAGTTCACGTGAAAATTCAATATTGGCATAGTTCTAAACTTTAGTTTCTAACCACCTTTATTATTGGTATTGTTATTTTTGGCCATGAATCTCCTGAAGTTAGGTGAATTGATCATGTCGCTCTAAATTGTACACGTCTATTGCGTGTACTCAATGACATATAATATATTATTGCAATCCTAAAATAAGTGTTATTTTAATTTATTTTGAACTCATTAAAATAAATATGATATTTTACTGAGTTACTTATATTTATTACTTTGATTTTTTTGAGTACTAATTTGTATTTTGAAACTTTTAAGATGACGAGAGGGTGGAAATAACAAATTAAATTTGAAAATGAACCAAAATAGAGGTGGCAATTAGGTAGAGGTTCTCGCAAAATGAATATTAAATATGTAGGGCCGTATTGTGAATTATGTGGATAATGTTTTTGCTTTCTATTTTTTTTTAAAAAAAATAATTATTACTTACAATAATCCAACGGGTATCCTCGTATGTGCCCATCCTACAAGTGATAAAATGATAAGTACCAGTCTACCATCAAGTTTGTAGGATAGAAACTATTTAGTATACATTGTTTTTGTCTTAATTTCTAGTTTTGGTATCCATCTAAATCGATACTCCATTATGTTAATTATTTCATTTCTTTCTTTTGACATCTACATCACTTTTTAATGTGGTTACCACTTGCTATAATCATACTTCACTTAGCATTTTATTTGAACTTAGTGAAAGTGAAATTTTTCCTAATAATTGGTCTAAAAATTGAAGAAGATTAAAGCCAAGAAATTGAGTTCTTCCTTCTTTCTTCCAACTTTGAAAGTACCGATAGATACTATCATATAAAAAGAAGAGGTGGTCTGACTAACTCAATGAAGTGAATTTTTCAAAAACATGCTCAGAAAAATGAGAAAAATGGAGTTTTTGAAAAGAAAAATTAACAGATATTTAAAGATAAATTTTTGAAATTTGGTTCAAAATTTATGGTCAAATATTAACTTATATTTATATATATACCTCTTCTAAAATGCTAATGAGAATTAGAATTTGCAGAGAGAAGAAATGGCAAAAGAATCCTACGATCAAGCCATTGCTGCACTCGAGAAACTCCTCAGGTTTGTACTCTCTCTACGACTCTACCTTCTAAATCACACTACTTTTTTCTCGATCAAGTGGGGCCCAAAAAATATACATACACCCACACATACGTAGACAAAAAAAATGTTAAAATTTGCGAATATGCAGAGAAAACATAATATAATCATGCAATGTTTACTCGTAAAATTCAATTTCCCGGCAATGAACATGTTACTTGGTTTCGAGTTCTCCAGATCTGCATTAATTTTACCATTCTATCATCATTTTTTTACCCCATATCTGCATTAATTTATCATGGTAATGGTGCTCAAACCACAAATCTTTTTTTTTTCTACCTGAAATATTGCTTCAATAATAATAATGGTCTAAATTATTTTCTGCAATTACAGCGAGAAAGCAGAACTTGGACCAGTTGCTGCAGCAAGAGTTGACCAGATCACTGCTGAATTGAAATCAGCAGACGGCGGCAAGGCATTCGACCCTGTTGAGCACATGAAAGCTGGCTTTATTCATTTCAAGACTGAGAAATATGAGTAAGCAAATTCATTCAAATTAAAATTTCTGCATATTTGATGTTGTAACATTATTAGTGTCTGATAATTTTTCCTGTTTTCTATTTATGTACCAACAGCACAAACCCAGCCTTATATGGTGAGCTAGCAAAGGGCCAGAGCCCTAAGGTACAAATTCCTTGTTAATTTGTTGTCTAATTTTATGATTTGTACGGTTTCTGATGAGTTCTATTGTCCTAAATGTGTAAACAGTTCATGGTTTTCGCGTGCTCTGACTCACGAGTCTGCCCATCCCATGTCCTCAACTTCCAACCTGGTGAGGCATTCATGGTTCGTAACATCGCCAACATGGTCCCTGCTTATGACAAGGTCAGTTACAAATCGATCAACTAGTCGATTATTTCGCTCTGGAATTGTGTTTTTTAAAAATAAAGATGGAATTGAATTTTTACAGGTCAGGTACTCTGGAGTAGGAGCAGCCATTGAATACGCCGTTCTTCATCTTAAGGTGGAGAACATCGTTGTCATTGGCCACAGTGCTTGTGGAGGTATCAAAGGTCTCATGTCACTACCTGAAGATGGTAGTGAATCAACGTACGTCACTCTATAAATCTATTCATTCAAAACACTTATCCTTAACAGATGATTGATTAATAATCTAATATACGCAGTGCCTTTATTGAGGATTGGGTAAAAATTTGTTTACCTGCCAAGGCAAAGGTTCTGGCCGATCACGGAGGGAAAGAATTTGCACATCAATGCACAGCTTGTGAGAAGGTAAAATTCAAATTTAACTTTTTGATTATCAATTAATTACATATATAGCAGTATTTTATAATTGATGAAAAATGTTGCAGGAAGCTGTGAACGTTTCACTTGGAAATCTGCTTACGTATCCATTCGTGAGAGAAGGATTGGTGAAGAAAACATTGGCATTGAAGGGAGGTTACTATGATTTCGTGAAGGGT</genome_strand>
        <mrna_strand>CGCGT-TTGTTGCCTTCGCAAGGCTTGGCAACTCTTCTTCTTCTTCTTCTATTCCAAGTCTCATCAGAAACGAGCCCGTCTTTGCTGCCCCTACTCCCATCATCAACCCCATTGTG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGAGAAGAAATGGCAAAAGAATCCTACGATCAAGCCATTGCTGCACTCGAGAAACTCCTCAG....................................................................................................................................................................................................................................................................................................................................................................................CGAGAAAGCAGAACTTGGACCAGTTGCTGCAGCAAGAGTTGACCAGATCACTGCTGAATTGAAATCAGCAGACGGCGGCAAGGCATTCGACCCTGTTGAGCACATGAAAGCTGGCTTTATTCATTTCAAGACTGAGAAATATGA..................................................................................................CACAAACCCAGCCTTATATGGTGAGCTAGCAAAGGGCCAGAGCCCTAAG....................................................................................TTCATGGTTTTCGCGTGCTCTGACTCACGAGTCTGCCCATCCCATGTCCTCAACTTCCAACCTGGTGAGGCATTCATGGTTCGTAACATCGCCAACATGGTCCCTGCTTATGACAAG.....................................................................................GTCAGGTACTCTGGAGTAGGAGCAGCCATTGAATACGCCGTTCTTCATCTTAAGGTGGAGAACATCGTTGTCATTGGCCACAGTGCTTGTGGAGGTATCAAAGGTCTCATGTCACTACCTGAAGATGGTAGTGAATCAAC.............................................................................TGCCTTTATTGAGGATTGGGTAAAAATTTGTTTACCTGCCAAGGCAAAGGTTCTGGCCGATCACGGAGGGAAAGAATTTGCACATCAATGCACAGCTTGTGAGAAG................................................................................GAAGCTGTGAACGTTTCACTTGGAAATCTGCTTACGTATCCATTCGTGAAAGAAGGATTGGTGAAGAAAACATTGGCATTGAAGGGAGGTTACTATGATTTCGTGAAGGGT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0236E02-u8qcS/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E730331" ref_strand="+" ref_description="SGN-E730331 [LA23DC01]">
      <seq>cgctaactagcgcaaggcttggcaactcttcttcttcttcttccattccaagtctcatcagaaacgagcccgtctttgctgcccctactcccatcatcaaccccattgtgagagaagaaatggcaaaagaatcctacgatcaagccattgctgcactcgagaaactcctcagcgagaaagcagaacttggaccagttgctgcagcaagagttgaccagatcactgctgaattgaaatcagcagacggcggcaaggcattcgaccctgttgagcacatgaaagctggctttattcatttcaagactgagaaatatgacacaaacccagccttatatggtgagctagcaaagggccagagccctaagttcatggttttcgcgtgctctgactcacgagtctgcccatcccatgtcctcaacttccaacctggtgaggcattcatggttcgtaacatcgccaacatggtccctgcttatgacaaggtcaggtactctggagtaggagcagccattgaatacgccgttcttcatcttaaggtggagaacatcgttgtcattggccacagtgcttgtggaggtatcaaaggtctcatgtcactacctgaagatggtagtgaatcaactgcctttattgaggattgggtaaaaatttgtttacctgccaaggcaaaggttctggccgatcacggagggaaagaatttgcacatcaatgcacagcttgtgagaaggaagctgtgaacgtttcacttggaaatctgcttacgtatccattcgtgagagaaggattggtgaagaaaacattggcattngaggggagttactatgatttt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0236E02-u8qcS/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0236E02.1" temp_strand="+" temp_description="C02HBa0236E02.1  AC215430.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0236E02 sequenced_by:kribb upload_account_name:korea">
        <position start="14783" stop="18194"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="15074" g_stop="15182" g_length="109"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="110" r_length="110" r_score="0.936"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="15183" i_stop="16379" i_length="1197">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.971" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="16380" g_stop="16441" g_length="62"/>
          <reference_exon_boundary r_type="cDNA" r_start="111" r_stop="172" r_length="62" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="16442" i_stop="16813" i_length="372">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="16814" g_stop="16957" g_length="144"/>
          <reference_exon_boundary r_type="cDNA" r_start="173" r_stop="316" r_length="144" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="16958" i_stop="17055" i_length="98">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="17056" g_stop="17104" g_length="49"/>
          <reference_exon_boundary r_type="cDNA" r_start="317" r_stop="365" r_length="49" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="17105" i_stop="17188" i_length="84">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.961" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="17189" g_stop="17305" g_length="117"/>
          <reference_exon_boundary r_type="cDNA" r_start="366" r_stop="482" r_length="117" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="17306" i_stop="17390" i_length="85">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.979" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="17391" g_stop="17530" g_length="140"/>
          <reference_exon_boundary r_type="cDNA" r_start="483" r_stop="622" r_length="140" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="17531" i_stop="17607" i_length="77">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.948" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="17608" g_stop="17713" g_length="106"/>
          <reference_exon_boundary r_type="cDNA" r_start="623" r_stop="728" r_length="106" r_score="1.000"/>
        </exon>
        <intron i_serial="7">
          <gDNA_intron_boundary i_start="17714" i_stop="17793" i_length="80">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="8">
          <gDNA_exon_boundary g_start="17794" g_stop="17895" g_length="102"/>
          <reference_exon_boundary r_type="cDNA" r_start="729" r_stop="830" r_length="102" r_score="0.951"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0236E02.1" gen_strand="+" ref_id="SGN-E730331" ref_strand="+">
        <total_alignment_score>0.985</total_alignment_score>
        <cumulative_length_of_scored_exons>829</cumulative_length_of_scored_exons>
        <coverage percentage="0.999" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0236E02.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E730331" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="15074" e_stop="15182"/>
          <exon e_start="16380" e_stop="16441"/>
          <exon e_start="16814" e_stop="16957"/>
          <exon e_start="17056" e_stop="17104"/>
          <exon e_start="17189" e_stop="17305"/>
          <exon e_start="17391" e_stop="17530"/>
          <exon e_start="17608" e_stop="17713"/>
          <exon e_start="17794" e_stop="17895"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CGTTGCCT-TCGCAAGGCTTGGCAACTCTTCTTCTTCTTCTTCTATTCCAAGTCTCATCAGAAACGAGCCCGTCTTTGCTGCCCCTACTCCCATCATCAACCCCATTGTGGTACGAATTTTTAACTTACATCACTGTATTTTAATCTGTTATAACAAGTTATTTATATTTGACGTTACTTAATTTATTTTTTAAGCAAGACATTTTTTTTGTCTTATCGTATTTTTTGTAACGACTTGTGTCCATGCATGCTAGTTCACGTGAAAATTCAATATTGGCATAGTTCTAAACTTTAGTTTCTAACCACCTTTATTATTGGTATTGTTATTTTTGGCCATGAATCTCCTGAAGTTAGGTGAATTGATCATGTCGCTCTAAATTGTACACGTCTATTGCGTGTACTCAATGACATATAATATATTATTGCAATCCTAAAATAAGTGTTATTTTAATTTATTTTGAACTCATTAAAATAAATATGATATTTTACTGAGTTACTTATATTTATTACTTTGATTTTTTTGAGTACTAATTTGTATTTTGAAACTTTTAAGATGACGAGAGGGTGGAAATAACAAATTAAATTTGAAAATGAACCAAAATAGAGGTGGCAATTAGGTAGAGGTTCTCGCAAAATGAATATTAAATATGTAGGGCCGTATTGTGAATTATGTGGATAATGTTTTTGCTTTCTATTTTTTTTTAAAAAAAATAATTATTACTTACAATAATCCAACGGGTATCCTCGTATGTGCCCATCCTACAAGTGATAAAATGATAAGTACCAGTCTACCATCAAGTTTGTAGGATAGAAACTATTTAGTATACATTGTTTTTGTCTTAATTTCTAGTTTTGGTATCCATCTAAATCGATACTCCATTATGTTAATTATTTCATTTCTTTCTTTTGACATCTACATCACTTTTTAATGTGGTTACCACTTGCTATAATCATACTTCACTTAGCATTTTATTTGAACTTAGTGAAAGTGAAATTTTTCCTAATAATTGGTCTAAAAATTGAAGAAGATTAAAGCCAAGAAATTGAGTTCTTCCTTCTTTCTTCCAACTTTGAAAGTACCGATAGATACTATCATATAAAAAGAAGAGGTGGTCTGACTAACTCAATGAAGTGAATTTTTCAAAAACATGCTCAGAAAAATGAGAAAAATGGAGTTTTTGAAAAGAAAAATTAACAGATATTTAAAGATAAATTTTTGAAATTTGGTTCAAAATTTATGGTCAAATATTAACTTATATTTATATATATACCTCTTCTAAAATGCTAATGAGAATTAGAATTTGCAGAGAGAAGAAATGGCAAAAGAATCCTACGATCAAGCCATTGCTGCACTCGAGAAACTCCTCAGGTTTGTACTCTCTCTACGACTCTACCTTCTAAATCACACTACTTTTTTCTCGATCAAGTGGGGCCCAAAAAATATACATACACCCACACATACGTAGACAAAAAAAATGTTAAAATTTGCGAATATGCAGAGAAAACATAATATAATCATGCAATGTTTACTCGTAAAATTCAATTTCCCGGCAATGAACATGTTACTTGGTTTCGAGTTCTCCAGATCTGCATTAATTTTACCATTCTATCATCATTTTTTTACCCCATATCTGCATTAATTTATCATGGTAATGGTGCTCAAACCACAAATCTTTTTTTTTTCTACCTGAAATATTGCTTCAATAATAATAATGGTCTAAATTATTTTCTGCAATTACAGCGAGAAAGCAGAACTTGGACCAGTTGCTGCAGCAAGAGTTGACCAGATCACTGCTGAATTGAAATCAGCAGACGGCGGCAAGGCATTCGACCCTGTTGAGCACATGAAAGCTGGCTTTATTCATTTCAAGACTGAGAAATATGAGTAAGCAAATTCATTCAAATTAAAATTTCTGCATATTTGATGTTGTAACATTATTAGTGTCTGATAATTTTTCCTGTTTTCTATTTATGTACCAACAGCACAAACCCAGCCTTATATGGTGAGCTAGCAAAGGGCCAGAGCCCTAAGGTACAAATTCCTTGTTAATTTGTTGTCTAATTTTATGATTTGTACGGTTTCTGATGAGTTCTATTGTCCTAAATGTGTAAACAGTTCATGGTTTTCGCGTGCTCTGACTCACGAGTCTGCCCATCCCATGTCCTCAACTTCCAACCTGGTGAGGCATTCATGGTTCGTAACATCGCCAACATGGTCCCTGCTTATGACAAGGTCAGTTACAAATCGATCAACTAGTCGATTATTTCGCTCTGGAATTGTGTTTTTTAAAAATAAAGATGGAATTGAATTTTTACAGGTCAGGTACTCTGGAGTAGGAGCAGCCATTGAATACGCCGTTCTTCATCTTAAGGTGGAGAACATCGTTGTCATTGGCCACAGTGCTTGTGGAGGTATCAAAGGTCTCATGTCACTACCTGAAGATGGTAGTGAATCAACGTACGTCACTCTATAAATCTATTCATTCAAAACACTTATCCTTAACAGATGATTGATTAATAATCTAATATACGCAGTGCCTTTATTGAGGATTGGGTAAAAATTTGTTTACCTGCCAAGGCAAAGGTTCTGGCCGATCACGGAGGGAAAGAATTTGCACATCAATGCACAGCTTGTGAGAAGGTAAAATTCAAATTTAACTTTTTGATTATCAATTAATTACATATATAGCAGTATTTTATAATTGATGAAAAATGTTGCAGGAAGCTGTGAACGTTTCACTTGGAAATCTGCTTACGTATCCATTCGTGAGAGAAGGATTGGTGAAGAAAACATTGGCATTGAAGGGAGGTTACTATGATTTC</genome_strand>
        <mrna_strand>CGCTAACTAGCGCAAGGCTTGGCAACTCTTCTTCTTCTTCTTCCATTCCAAGTCTCATCAGAAACGAGCCCGTCTTTGCTGCCCCTACTCCCATCATCAACCCCATTGTG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGAGAAGAAATGGCAAAAGAATCCTACGATCAAGCCATTGCTGCACTCGAGAAACTCCTCAG....................................................................................................................................................................................................................................................................................................................................................................................CGAGAAAGCAGAACTTGGACCAGTTGCTGCAGCAAGAGTTGACCAGATCACTGCTGAATTGAAATCAGCAGACGGCGGCAAGGCATTCGACCCTGTTGAGCACATGAAAGCTGGCTTTATTCATTTCAAGACTGAGAAATATGA..................................................................................................CACAAACCCAGCCTTATATGGTGAGCTAGCAAAGGGCCAGAGCCCTAAG....................................................................................TTCATGGTTTTCGCGTGCTCTGACTCACGAGTCTGCCCATCCCATGTCCTCAACTTCCAACCTGGTGAGGCATTCATGGTTCGTAACATCGCCAACATGGTCCCTGCTTATGACAAG.....................................................................................GTCAGGTACTCTGGAGTAGGAGCAGCCATTGAATACGCCGTTCTTCATCTTAAGGTGGAGAACATCGTTGTCATTGGCCACAGTGCTTGTGGAGGTATCAAAGGTCTCATGTCACTACCTGAAGATGGTAGTGAATCAAC.............................................................................TGCCTTTATTGAGGATTGGGTAAAAATTTGTTTACCTGCCAAGGCAAAGGTTCTGGCCGATCACGGAGGGAAAGAATTTGCACATCAATGCACAGCTTGTGAGAAG................................................................................GAAGCTGTGAACGTTTCACTTGGAAATCTGCTTACGTATCCATTCGTGAGAGAAGGATTGGTGAAGAAAACATTGGCATTNGAGGGGAGTTACTATGATTTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0236E02-u8qcS/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E726082" ref_strand="+" ref_description="SGN-E726082 [LA10BA11]">
      <seq>tcttcttctattccaagtctcatcagaaacgagcccgtctttgctgcccctactcccatcatcaaccccattgtgagagaagaaatggcaaaagaatcctacgatcaagccattgctgcactcgagaaactcctcagcgagaaagcagaacttggaccagttgctgcagcaagagttgaccagatcactgctgaattgaaatcagcagacggcggcaaggcattcgaccctgttgagcacatgaaagctggctttattcatttcaagactgagaaatatgacacaaacccagccttatatggtgagctagcaaagggccagagccctaagttcatggttttcgcgtgctctgactcacgagtctgcccatcccatgtcctcaacttccaacctggtgaggcattcatggttcgtaacatcgccaacatggtccctgcttatgacaaggtcaggtactctggagtaggagcagccattgatacgccgttcttatcttaggtggagacatcgt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0236E02-u8qcS/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0236E02.1" temp_strand="+" temp_description="C02HBa0236E02.1  AC215430.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0236E02 sequenced_by:kribb upload_account_name:korea">
        <position start="14808" stop="17758"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="15108" g_stop="15182" g_length="75"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="75" r_length="75" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="15183" i_stop="16379" i_length="1197">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.971" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="16380" g_stop="16441" g_length="62"/>
          <reference_exon_boundary r_type="cDNA" r_start="76" r_stop="137" r_length="62" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="16442" i_stop="16813" i_length="372">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="16814" g_stop="16957" g_length="144"/>
          <reference_exon_boundary r_type="cDNA" r_start="138" r_stop="281" r_length="144" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="16958" i_stop="17055" i_length="98">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="17056" g_stop="17104" g_length="49"/>
          <reference_exon_boundary r_type="cDNA" r_start="282" r_stop="330" r_length="49" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="17105" i_stop="17188" i_length="84">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.961" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="17189" g_stop="17305" g_length="117"/>
          <reference_exon_boundary r_type="cDNA" r_start="331" r_stop="447" r_length="117" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="17306" i_stop="17390" i_length="85">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.979" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="17391" g_stop="17458" g_length="68"/>
          <reference_exon_boundary r_type="cDNA" r_start="448" r_stop="511" r_length="64" r_score="0.941"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0236E02.1" gen_strand="+" ref_id="SGN-E726082" ref_strand="+">
        <total_alignment_score>0.991</total_alignment_score>
        <cumulative_length_of_scored_exons>515</cumulative_length_of_scored_exons>
        <coverage percentage="1.008" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0236E02.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E726082" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="15108" e_stop="15182"/>
          <exon e_start="16380" e_stop="16441"/>
          <exon e_start="16814" e_stop="16957"/>
          <exon e_start="17056" e_stop="17104"/>
          <exon e_start="17189" e_stop="17305"/>
          <exon e_start="17391" e_stop="17458"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCTTCTTCTATTCCAAGTCTCATCAGAAACGAGCCCGTCTTTGCTGCCCCTACTCCCATCATCAACCCCATTGTGGTACGAATTTTTAACTTACATCACTGTATTTTAATCTGTTATAACAAGTTATTTATATTTGACGTTACTTAATTTATTTTTTAAGCAAGACATTTTTTTTGTCTTATCGTATTTTTTGTAACGACTTGTGTCCATGCATGCTAGTTCACGTGAAAATTCAATATTGGCATAGTTCTAAACTTTAGTTTCTAACCACCTTTATTATTGGTATTGTTATTTTTGGCCATGAATCTCCTGAAGTTAGGTGAATTGATCATGTCGCTCTAAATTGTACACGTCTATTGCGTGTACTCAATGACATATAATATATTATTGCAATCCTAAAATAAGTGTTATTTTAATTTATTTTGAACTCATTAAAATAAATATGATATTTTACTGAGTTACTTATATTTATTACTTTGATTTTTTTGAGTACTAATTTGTATTTTGAAACTTTTAAGATGACGAGAGGGTGGAAATAACAAATTAAATTTGAAAATGAACCAAAATAGAGGTGGCAATTAGGTAGAGGTTCTCGCAAAATGAATATTAAATATGTAGGGCCGTATTGTGAATTATGTGGATAATGTTTTTGCTTTCTATTTTTTTTTAAAAAAAATAATTATTACTTACAATAATCCAACGGGTATCCTCGTATGTGCCCATCCTACAAGTGATAAAATGATAAGTACCAGTCTACCATCAAGTTTGTAGGATAGAAACTATTTAGTATACATTGTTTTTGTCTTAATTTCTAGTTTTGGTATCCATCTAAATCGATACTCCATTATGTTAATTATTTCATTTCTTTCTTTTGACATCTACATCACTTTTTAATGTGGTTACCACTTGCTATAATCATACTTCACTTAGCATTTTATTTGAACTTAGTGAAAGTGAAATTTTTCCTAATAATTGGTCTAAAAATTGAAGAAGATTAAAGCCAAGAAATTGAGTTCTTCCTTCTTTCTTCCAACTTTGAAAGTACCGATAGATACTATCATATAAAAAGAAGAGGTGGTCTGACTAACTCAATGAAGTGAATTTTTCAAAAACATGCTCAGAAAAATGAGAAAAATGGAGTTTTTGAAAAGAAAAATTAACAGATATTTAAAGATAAATTTTTGAAATTTGGTTCAAAATTTATGGTCAAATATTAACTTATATTTATATATATACCTCTTCTAAAATGCTAATGAGAATTAGAATTTGCAGAGAGAAGAAATGGCAAAAGAATCCTACGATCAAGCCATTGCTGCACTCGAGAAACTCCTCAGGTTTGTACTCTCTCTACGACTCTACCTTCTAAATCACACTACTTTTTTCTCGATCAAGTGGGGCCCAAAAAATATACATACACCCACACATACGTAGACAAAAAAAATGTTAAAATTTGCGAATATGCAGAGAAAACATAATATAATCATGCAATGTTTACTCGTAAAATTCAATTTCCCGGCAATGAACATGTTACTTGGTTTCGAGTTCTCCAGATCTGCATTAATTTTACCATTCTATCATCATTTTTTTACCCCATATCTGCATTAATTTATCATGGTAATGGTGCTCAAACCACAAATCTTTTTTTTTTCTACCTGAAATATTGCTTCAATAATAATAATGGTCTAAATTATTTTCTGCAATTACAGCGAGAAAGCAGAACTTGGACCAGTTGCTGCAGCAAGAGTTGACCAGATCACTGCTGAATTGAAATCAGCAGACGGCGGCAAGGCATTCGACCCTGTTGAGCACATGAAAGCTGGCTTTATTCATTTCAAGACTGAGAAATATGAGTAAGCAAATTCATTCAAATTAAAATTTCTGCATATTTGATGTTGTAACATTATTAGTGTCTGATAATTTTTCCTGTTTTCTATTTATGTACCAACAGCACAAACCCAGCCTTATATGGTGAGCTAGCAAAGGGCCAGAGCCCTAAGGTACAAATTCCTTGTTAATTTGTTGTCTAATTTTATGATTTGTACGGTTTCTGATGAGTTCTATTGTCCTAAATGTGTAAACAGTTCATGGTTTTCGCGTGCTCTGACTCACGAGTCTGCCCATCCCATGTCCTCAACTTCCAACCTGGTGAGGCATTCATGGTTCGTAACATCGCCAACATGGTCCCTGCTTATGACAAGGTCAGTTACAAATCGATCAACTAGTCGATTATTTCGCTCTGGAATTGTGTTTTTTAAAAATAAAGATGGAATTGAATTTTTACAGGTCAGGTACTCTGGAGTAGGAGCAGCCATTGAATACGCCGTTCTTCATCTTAAGGTGGAGAACATCGT</genome_strand>
        <mrna_strand>TCTTCTTCTATTCCAAGTCTCATCAGAAACGAGCCCGTCTTTGCTGCCCCTACTCCCATCATCAACCCCATTGTG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGAGAAGAAATGGCAAAAGAATCCTACGATCAAGCCATTGCTGCACTCGAGAAACTCCTCAG....................................................................................................................................................................................................................................................................................................................................................................................CGAGAAAGCAGAACTTGGACCAGTTGCTGCAGCAAGAGTTGACCAGATCACTGCTGAATTGAAATCAGCAGACGGCGGCAAGGCATTCGACCCTGTTGAGCACATGAAAGCTGGCTTTATTCATTTCAAGACTGAGAAATATGA..................................................................................................CACAAACCCAGCCTTATATGGTGAGCTAGCAAAGGGCCAGAGCCCTAAG....................................................................................TTCATGGTTTTCGCGTGCTCTGACTCACGAGTCTGCCCATCCCATGTCCTCAACTTCCAACCTGGTGAGGCATTCATGGTTCGTAACATCGCCAACATGGTCCCTGCTTATGACAAG.....................................................................................GTCAGGTACTCTGGAGTAGGAGCAGCCATTG-ATACGCCGTTCTT-ATCTT-AGGTGGAG-ACATCGT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0236E02-u8qcS/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E296757" ref_strand="+" ref_description="SGN-E296757 [cLET-26-C19]">
      <seq>aagaagaagaagaagagttgccaagcctcatcagaaacgagcccgtctttgctgcccctactcccatcatcaaccccattgtgagagaagaaatggcaaaagaatcctacgatcaagccattgctgcactcgagaaactcctcagcgagaaagcagaacttggaccagttgctgcagcaagagttgaccagatcactgctgaattgaaatcagcagacggcggcaaggcattcgaccctgttgagcacatgaaagctggctttattcatttcaagactgagaaatatgacacaaacccagccttatatggtgagctagcaaagggccagagccctaagttcatggttttcgcgtgctctgactcacgagtctgcccatcccatgtcctcaacttccaacctggtgaggcattcatggttcgtaacatcgccaacatggtccctgcttatgacaaggtcaggtactctggagtaggagcagccattgaatacgccgttcttcatcttaaggtggagaacatcgttgtcattggccacagtgcttgtggaggtatcaaaggtctcatgtcactacctgaagatggtagtgaatcaactgcctttattgaggattgggtaaaaatttgtttacct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0236E02-u8qcS/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0236E02.1" temp_strand="+" temp_description="C02HBa0236E02.1  AC215430.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0236E02 sequenced_by:kribb upload_account_name:korea">
        <position start="14818" stop="17944"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="15120" g_stop="15182" g_length="63"/>
          <reference_exon_boundary r_type="cDNA" r_start="21" r_stop="83" r_length="63" r_score="0.984"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="15183" i_stop="16379" i_length="1197">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.971" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="16380" g_stop="16441" g_length="62"/>
          <reference_exon_boundary r_type="cDNA" r_start="84" r_stop="145" r_length="62" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="16442" i_stop="16813" i_length="372">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="16814" g_stop="16957" g_length="144"/>
          <reference_exon_boundary r_type="cDNA" r_start="146" r_stop="289" r_length="144" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="16958" i_stop="17055" i_length="98">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="17056" g_stop="17104" g_length="49"/>
          <reference_exon_boundary r_type="cDNA" r_start="290" r_stop="338" r_length="49" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="17105" i_stop="17188" i_length="84">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.961" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="17189" g_stop="17305" g_length="117"/>
          <reference_exon_boundary r_type="cDNA" r_start="339" r_stop="455" r_length="117" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="17306" i_stop="17390" i_length="85">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.979" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="17391" g_stop="17530" g_length="140"/>
          <reference_exon_boundary r_type="cDNA" r_start="456" r_stop="595" r_length="140" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="17531" i_stop="17607" i_length="77">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.948" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="17608" g_stop="17644" g_length="37"/>
          <reference_exon_boundary r_type="cDNA" r_start="596" r_stop="632" r_length="37" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0236E02.1" gen_strand="+" ref_id="SGN-E296757" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>612</cumulative_length_of_scored_exons>
        <coverage percentage="0.968" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0236E02.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E296757" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="15120" e_stop="15182"/>
          <exon e_start="16380" e_stop="16441"/>
          <exon e_start="16814" e_stop="16957"/>
          <exon e_start="17056" e_stop="17104"/>
          <exon e_start="17189" e_stop="17305"/>
          <exon e_start="17391" e_stop="17530"/>
          <exon e_start="17608" e_stop="17644"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCAAGTCTCATCAGAAACGAGCCCGTCTTTGCTGCCCCTACTCCCATCATCAACCCCATTGTGGTACGAATTTTTAACTTACATCACTGTATTTTAATCTGTTATAACAAGTTATTTATATTTGACGTTACTTAATTTATTTTTTAAGCAAGACATTTTTTTTGTCTTATCGTATTTTTTGTAACGACTTGTGTCCATGCATGCTAGTTCACGTGAAAATTCAATATTGGCATAGTTCTAAACTTTAGTTTCTAACCACCTTTATTATTGGTATTGTTATTTTTGGCCATGAATCTCCTGAAGTTAGGTGAATTGATCATGTCGCTCTAAATTGTACACGTCTATTGCGTGTACTCAATGACATATAATATATTATTGCAATCCTAAAATAAGTGTTATTTTAATTTATTTTGAACTCATTAAAATAAATATGATATTTTACTGAGTTACTTATATTTATTACTTTGATTTTTTTGAGTACTAATTTGTATTTTGAAACTTTTAAGATGACGAGAGGGTGGAAATAACAAATTAAATTTGAAAATGAACCAAAATAGAGGTGGCAATTAGGTAGAGGTTCTCGCAAAATGAATATTAAATATGTAGGGCCGTATTGTGAATTATGTGGATAATGTTTTTGCTTTCTATTTTTTTTTAAAAAAAATAATTATTACTTACAATAATCCAACGGGTATCCTCGTATGTGCCCATCCTACAAGTGATAAAATGATAAGTACCAGTCTACCATCAAGTTTGTAGGATAGAAACTATTTAGTATACATTGTTTTTGTCTTAATTTCTAGTTTTGGTATCCATCTAAATCGATACTCCATTATGTTAATTATTTCATTTCTTTCTTTTGACATCTACATCACTTTTTAATGTGGTTACCACTTGCTATAATCATACTTCACTTAGCATTTTATTTGAACTTAGTGAAAGTGAAATTTTTCCTAATAATTGGTCTAAAAATTGAAGAAGATTAAAGCCAAGAAATTGAGTTCTTCCTTCTTTCTTCCAACTTTGAAAGTACCGATAGATACTATCATATAAAAAGAAGAGGTGGTCTGACTAACTCAATGAAGTGAATTTTTCAAAAACATGCTCAGAAAAATGAGAAAAATGGAGTTTTTGAAAAGAAAAATTAACAGATATTTAAAGATAAATTTTTGAAATTTGGTTCAAAATTTATGGTCAAATATTAACTTATATTTATATATATACCTCTTCTAAAATGCTAATGAGAATTAGAATTTGCAGAGAGAAGAAATGGCAAAAGAATCCTACGATCAAGCCATTGCTGCACTCGAGAAACTCCTCAGGTTTGTACTCTCTCTACGACTCTACCTTCTAAATCACACTACTTTTTTCTCGATCAAGTGGGGCCCAAAAAATATACATACACCCACACATACGTAGACAAAAAAAATGTTAAAATTTGCGAATATGCAGAGAAAACATAATATAATCATGCAATGTTTACTCGTAAAATTCAATTTCCCGGCAATGAACATGTTACTTGGTTTCGAGTTCTCCAGATCTGCATTAATTTTACCATTCTATCATCATTTTTTTACCCCATATCTGCATTAATTTATCATGGTAATGGTGCTCAAACCACAAATCTTTTTTTTTTCTACCTGAAATATTGCTTCAATAATAATAATGGTCTAAATTATTTTCTGCAATTACAGCGAGAAAGCAGAACTTGGACCAGTTGCTGCAGCAAGAGTTGACCAGATCACTGCTGAATTGAAATCAGCAGACGGCGGCAAGGCATTCGACCCTGTTGAGCACATGAAAGCTGGCTTTATTCATTTCAAGACTGAGAAATATGAGTAAGCAAATTCATTCAAATTAAAATTTCTGCATATTTGATGTTGTAACATTATTAGTGTCTGATAATTTTTCCTGTTTTCTATTTATGTACCAACAGCACAAACCCAGCCTTATATGGTGAGCTAGCAAAGGGCCAGAGCCCTAAGGTACAAATTCCTTGTTAATTTGTTGTCTAATTTTATGATTTGTACGGTTTCTGATGAGTTCTATTGTCCTAAATGTGTAAACAGTTCATGGTTTTCGCGTGCTCTGACTCACGAGTCTGCCCATCCCATGTCCTCAACTTCCAACCTGGTGAGGCATTCATGGTTCGTAACATCGCCAACATGGTCCCTGCTTATGACAAGGTCAGTTACAAATCGATCAACTAGTCGATTATTTCGCTCTGGAATTGTGTTTTTTAAAAATAAAGATGGAATTGAATTTTTACAGGTCAGGTACTCTGGAGTAGGAGCAGCCATTGAATACGCCGTTCTTCATCTTAAGGTGGAGAACATCGTTGTCATTGGCCACAGTGCTTGTGGAGGTATCAAAGGTCTCATGTCACTACCTGAAGATGGTAGTGAATCAACGTACGTCACTCTATAAATCTATTCATTCAAAACACTTATCCTTAACAGATGATTGATTAATAATCTAATATACGCAGTGCCTTTATTGAGGATTGGGTAAAAATTTGTTTACCT</genome_strand>
        <mrna_strand>CCAAGCCTCATCAGAAACGAGCCCGTCTTTGCTGCCCCTACTCCCATCATCAACCCCATTGTG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGAGAAGAAATGGCAAAAGAATCCTACGATCAAGCCATTGCTGCACTCGAGAAACTCCTCAG....................................................................................................................................................................................................................................................................................................................................................................................CGAGAAAGCAGAACTTGGACCAGTTGCTGCAGCAAGAGTTGACCAGATCACTGCTGAATTGAAATCAGCAGACGGCGGCAAGGCATTCGACCCTGTTGAGCACATGAAAGCTGGCTTTATTCATTTCAAGACTGAGAAATATGA..................................................................................................CACAAACCCAGCCTTATATGGTGAGCTAGCAAAGGGCCAGAGCCCTAAG....................................................................................TTCATGGTTTTCGCGTGCTCTGACTCACGAGTCTGCCCATCCCATGTCCTCAACTTCCAACCTGGTGAGGCATTCATGGTTCGTAACATCGCCAACATGGTCCCTGCTTATGACAAG.....................................................................................GTCAGGTACTCTGGAGTAGGAGCAGCCATTGAATACGCCGTTCTTCATCTTAAGGTGGAGAACATCGTTGTCATTGGCCACAGTGCTTGTGGAGGTATCAAAGGTCTCATGTCACTACCTGAAGATGGTAGTGAATCAAC.............................................................................TGCCTTTATTGAGGATTGGGTAAAAATTTGTTTACCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0236E02-u8qcS/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E727700" ref_strand="+" ref_description="SGN-E727700 [LA15CA01]">
      <seq>cgtgaaacgagcccgtctttgctgcccctactcccatcatcaaccccattgtgagagaagaaatggcaaaagaatcctacgatcaagccattgctgcactcgagaaactcctcagcgagaaagcagaacttggaccagttgctgcagcaagagttgaccagatcactgctgaattgaaatcagcagacggcggcaaggcattcgaccctgttgagcacatgaaagctggctttattcatttcaagactgagaaatatgacacaaacccagccttatatggtgagctagcaaagggccagagccctaagttcatggttttcgcgtgctctgactcacgagtctgcccatcccatgtcctcaacttccaacctggtgaggcattcatggttcgtaacatcgccaacatggtccctgcttatgacaaggtcaggtactctggagtaggagcagccattgaatacgccgttcttcatcttaaggtggagaacatcgttgtcattggccacagtgcttgtggaggtatcaaaggtctcatgtcactacctgaagatggtagtgaatcaactgcctttattgaggattgggtaaaaatttgtttacctgccaaggcaaaggttctggccgatcacggagggaaagaatttgcacatcaatgcacagcttgtgagaaggaagctgtgaacgtttcactt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0236E02-u8qcS/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0236E02.1" temp_strand="+" temp_description="C02HBa0236E02.1  AC215430.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0236E02 sequenced_by:kribb upload_account_name:korea">
        <position start="14833" stop="18114"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="15130" g_stop="15182" g_length="53"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="53" r_length="53" r_score="0.943"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="15183" i_stop="16379" i_length="1197">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.971" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="16380" g_stop="16441" g_length="62"/>
          <reference_exon_boundary r_type="cDNA" r_start="54" r_stop="115" r_length="62" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="16442" i_stop="16813" i_length="372">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="16814" g_stop="16957" g_length="144"/>
          <reference_exon_boundary r_type="cDNA" r_start="116" r_stop="259" r_length="144" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="16958" i_stop="17055" i_length="98">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="17056" g_stop="17104" g_length="49"/>
          <reference_exon_boundary r_type="cDNA" r_start="260" r_stop="308" r_length="49" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="17105" i_stop="17188" i_length="84">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.961" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="17189" g_stop="17305" g_length="117"/>
          <reference_exon_boundary r_type="cDNA" r_start="309" r_stop="425" r_length="117" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="17306" i_stop="17390" i_length="85">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.979" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="17391" g_stop="17530" g_length="140"/>
          <reference_exon_boundary r_type="cDNA" r_start="426" r_stop="565" r_length="140" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="17531" i_stop="17607" i_length="77">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.948" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="17608" g_stop="17713" g_length="106"/>
          <reference_exon_boundary r_type="cDNA" r_start="566" r_stop="671" r_length="106" r_score="1.000"/>
        </exon>
        <intron i_serial="7">
          <gDNA_intron_boundary i_start="17714" i_stop="17793" i_length="80">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="8">
          <gDNA_exon_boundary g_start="17794" g_stop="17814" g_length="21"/>
          <reference_exon_boundary r_type="cDNA" r_start="672" r_stop="692" r_length="21" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0236E02.1" gen_strand="+" ref_id="SGN-E727700" ref_strand="+">
        <total_alignment_score>0.995</total_alignment_score>
        <cumulative_length_of_scored_exons>692</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0236E02.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E727700" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="15130" e_stop="15182"/>
          <exon e_start="16380" e_stop="16441"/>
          <exon e_start="16814" e_stop="16957"/>
          <exon e_start="17056" e_stop="17104"/>
          <exon e_start="17189" e_stop="17305"/>
          <exon e_start="17391" e_stop="17530"/>
          <exon e_start="17608" e_stop="17713"/>
          <exon e_start="17794" e_stop="17814"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCAGAAACGAGCCCGTCTTTGCTGCCCCTACTCCCATCATCAACCCCATTGTGGTACGAATTTTTAACTTACATCACTGTATTTTAATCTGTTATAACAAGTTATTTATATTTGACGTTACTTAATTTATTTTTTAAGCAAGACATTTTTTTTGTCTTATCGTATTTTTTGTAACGACTTGTGTCCATGCATGCTAGTTCACGTGAAAATTCAATATTGGCATAGTTCTAAACTTTAGTTTCTAACCACCTTTATTATTGGTATTGTTATTTTTGGCCATGAATCTCCTGAAGTTAGGTGAATTGATCATGTCGCTCTAAATTGTACACGTCTATTGCGTGTACTCAATGACATATAATATATTATTGCAATCCTAAAATAAGTGTTATTTTAATTTATTTTGAACTCATTAAAATAAATATGATATTTTACTGAGTTACTTATATTTATTACTTTGATTTTTTTGAGTACTAATTTGTATTTTGAAACTTTTAAGATGACGAGAGGGTGGAAATAACAAATTAAATTTGAAAATGAACCAAAATAGAGGTGGCAATTAGGTAGAGGTTCTCGCAAAATGAATATTAAATATGTAGGGCCGTATTGTGAATTATGTGGATAATGTTTTTGCTTTCTATTTTTTTTTAAAAAAAATAATTATTACTTACAATAATCCAACGGGTATCCTCGTATGTGCCCATCCTACAAGTGATAAAATGATAAGTACCAGTCTACCATCAAGTTTGTAGGATAGAAACTATTTAGTATACATTGTTTTTGTCTTAATTTCTAGTTTTGGTATCCATCTAAATCGATACTCCATTATGTTAATTATTTCATTTCTTTCTTTTGACATCTACATCACTTTTTAATGTGGTTACCACTTGCTATAATCATACTTCACTTAGCATTTTATTTGAACTTAGTGAAAGTGAAATTTTTCCTAATAATTGGTCTAAAAATTGAAGAAGATTAAAGCCAAGAAATTGAGTTCTTCCTTCTTTCTTCCAACTTTGAAAGTACCGATAGATACTATCATATAAAAAGAAGAGGTGGTCTGACTAACTCAATGAAGTGAATTTTTCAAAAACATGCTCAGAAAAATGAGAAAAATGGAGTTTTTGAAAAGAAAAATTAACAGATATTTAAAGATAAATTTTTGAAATTTGGTTCAAAATTTATGGTCAAATATTAACTTATATTTATATATATACCTCTTCTAAAATGCTAATGAGAATTAGAATTTGCAGAGAGAAGAAATGGCAAAAGAATCCTACGATCAAGCCATTGCTGCACTCGAGAAACTCCTCAGGTTTGTACTCTCTCTACGACTCTACCTTCTAAATCACACTACTTTTTTCTCGATCAAGTGGGGCCCAAAAAATATACATACACCCACACATACGTAGACAAAAAAAATGTTAAAATTTGCGAATATGCAGAGAAAACATAATATAATCATGCAATGTTTACTCGTAAAATTCAATTTCCCGGCAATGAACATGTTACTTGGTTTCGAGTTCTCCAGATCTGCATTAATTTTACCATTCTATCATCATTTTTTTACCCCATATCTGCATTAATTTATCATGGTAATGGTGCTCAAACCACAAATCTTTTTTTTTTCTACCTGAAATATTGCTTCAATAATAATAATGGTCTAAATTATTTTCTGCAATTACAGCGAGAAAGCAGAACTTGGACCAGTTGCTGCAGCAAGAGTTGACCAGATCACTGCTGAATTGAAATCAGCAGACGGCGGCAAGGCATTCGACCCTGTTGAGCACATGAAAGCTGGCTTTATTCATTTCAAGACTGAGAAATATGAGTAAGCAAATTCATTCAAATTAAAATTTCTGCATATTTGATGTTGTAACATTATTAGTGTCTGATAATTTTTCCTGTTTTCTATTTATGTACCAACAGCACAAACCCAGCCTTATATGGTGAGCTAGCAAAGGGCCAGAGCCCTAAGGTACAAATTCCTTGTTAATTTGTTGTCTAATTTTATGATTTGTACGGTTTCTGATGAGTTCTATTGTCCTAAATGTGTAAACAGTTCATGGTTTTCGCGTGCTCTGACTCACGAGTCTGCCCATCCCATGTCCTCAACTTCCAACCTGGTGAGGCATTCATGGTTCGTAACATCGCCAACATGGTCCCTGCTTATGACAAGGTCAGTTACAAATCGATCAACTAGTCGATTATTTCGCTCTGGAATTGTGTTTTTTAAAAATAAAGATGGAATTGAATTTTTACAGGTCAGGTACTCTGGAGTAGGAGCAGCCATTGAATACGCCGTTCTTCATCTTAAGGTGGAGAACATCGTTGTCATTGGCCACAGTGCTTGTGGAGGTATCAAAGGTCTCATGTCACTACCTGAAGATGGTAGTGAATCAACGTACGTCACTCTATAAATCTATTCATTCAAAACACTTATCCTTAACAGATGATTGATTAATAATCTAATATACGCAGTGCCTTTATTGAGGATTGGGTAAAAATTTGTTTACCTGCCAAGGCAAAGGTTCTGGCCGATCACGGAGGGAAAGAATTTGCACATCAATGCACAGCTTGTGAGAAGGTAAAATTCAAATTTAACTTTTTGATTATCAATTAATTACATATATAGCAGTATTTTATAATTGATGAAAAATGTTGCAGGAAGCTGTGAACGTTTCACTT</genome_strand>
        <mrna_strand>CGTGAAACGAGCCCGTCTTTGCTGCCCCTACTCCCATCATCAACCCCATTGTG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGAGAAGAAATGGCAAAAGAATCCTACGATCAAGCCATTGCTGCACTCGAGAAACTCCTCAG....................................................................................................................................................................................................................................................................................................................................................................................CGAGAAAGCAGAACTTGGACCAGTTGCTGCAGCAAGAGTTGACCAGATCACTGCTGAATTGAAATCAGCAGACGGCGGCAAGGCATTCGACCCTGTTGAGCACATGAAAGCTGGCTTTATTCATTTCAAGACTGAGAAATATGA..................................................................................................CACAAACCCAGCCTTATATGGTGAGCTAGCAAAGGGCCAGAGCCCTAAG....................................................................................TTCATGGTTTTCGCGTGCTCTGACTCACGAGTCTGCCCATCCCATGTCCTCAACTTCCAACCTGGTGAGGCATTCATGGTTCGTAACATCGCCAACATGGTCCCTGCTTATGACAAG.....................................................................................GTCAGGTACTCTGGAGTAGGAGCAGCCATTGAATACGCCGTTCTTCATCTTAAGGTGGAGAACATCGTTGTCATTGGCCACAGTGCTTGTGGAGGTATCAAAGGTCTCATGTCACTACCTGAAGATGGTAGTGAATCAAC.............................................................................TGCCTTTATTGAGGATTGGGTAAAAATTTGTTTACCTGCCAAGGCAAAGGTTCTGGCCGATCACGGAGGGAAAGAATTTGCACATCAATGCACAGCTTGTGAGAAG................................................................................GAAGCTGTGAACGTTTCACTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0236E02-u8qcS/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E294181" ref_strand="+" ref_description="SGN-E294181 [cLET-13-J6]">
      <seq>agaaacgagcccgtctttgctgcccctactcccatcatcaaccccattgtgagagaagaaatggcaaaagaatcctacgatcaagccattgctgcactcgagaaactcctcagcgagaaagcagaacttggaccagttgctgcagcaagagttgaccagatcactgctgaattgaaatcagcagacggcggcaaggcattcgaccctgttgagcacatgaaagctggctttattcatttcaagactgagaaatatgacacaaacccagccttatatggtgagctagcaaagggccagagccctaagttcatggttttcgcgtgctctgactcacgagtctgcccatcccatgtcctcaacttccaacctggtgaggcattcatggttcgtaacatcgccaacatggtccctgcttatgacaaggtcaggtactctggagtaggagcagccattgaatacgccgttcttcatcttaaggtggagaacatcgttgtcattggccacagtgcttgtggaggtatcaaaggtctcatgtcactacctgaaga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0236E02-u8qcS/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0236E02.1" temp_strand="+" temp_description="C02HBa0236E02.1  AC215430.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0236E02 sequenced_by:kribb upload_account_name:korea">
        <position start="14832" stop="17815"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="15132" g_stop="15182" g_length="51"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="51" r_length="51" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="15183" i_stop="16379" i_length="1197">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.971" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="16380" g_stop="16441" g_length="62"/>
          <reference_exon_boundary r_type="cDNA" r_start="52" r_stop="113" r_length="62" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="16442" i_stop="16813" i_length="372">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="16814" g_stop="16957" g_length="144"/>
          <reference_exon_boundary r_type="cDNA" r_start="114" r_stop="257" r_length="144" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="16958" i_stop="17055" i_length="98">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="17056" g_stop="17104" g_length="49"/>
          <reference_exon_boundary r_type="cDNA" r_start="258" r_stop="306" r_length="49" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="17105" i_stop="17188" i_length="84">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.961" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="17189" g_stop="17305" g_length="117"/>
          <reference_exon_boundary r_type="cDNA" r_start="307" r_stop="423" r_length="117" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="17306" i_stop="17390" i_length="85">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.979" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="17391" g_stop="17515" g_length="125"/>
          <reference_exon_boundary r_type="cDNA" r_start="424" r_stop="548" r_length="125" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0236E02.1" gen_strand="+" ref_id="SGN-E294181" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>548</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0236E02.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E294181" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="15132" e_stop="15182"/>
          <exon e_start="16380" e_stop="16441"/>
          <exon e_start="16814" e_stop="16957"/>
          <exon e_start="17056" e_stop="17104"/>
          <exon e_start="17189" e_stop="17305"/>
          <exon e_start="17391" e_stop="17515"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGAAACGAGCCCGTCTTTGCTGCCCCTACTCCCATCATCAACCCCATTGTGGTACGAATTTTTAACTTACATCACTGTATTTTAATCTGTTATAACAAGTTATTTATATTTGACGTTACTTAATTTATTTTTTAAGCAAGACATTTTTTTTGTCTTATCGTATTTTTTGTAACGACTTGTGTCCATGCATGCTAGTTCACGTGAAAATTCAATATTGGCATAGTTCTAAACTTTAGTTTCTAACCACCTTTATTATTGGTATTGTTATTTTTGGCCATGAATCTCCTGAAGTTAGGTGAATTGATCATGTCGCTCTAAATTGTACACGTCTATTGCGTGTACTCAATGACATATAATATATTATTGCAATCCTAAAATAAGTGTTATTTTAATTTATTTTGAACTCATTAAAATAAATATGATATTTTACTGAGTTACTTATATTTATTACTTTGATTTTTTTGAGTACTAATTTGTATTTTGAAACTTTTAAGATGACGAGAGGGTGGAAATAACAAATTAAATTTGAAAATGAACCAAAATAGAGGTGGCAATTAGGTAGAGGTTCTCGCAAAATGAATATTAAATATGTAGGGCCGTATTGTGAATTATGTGGATAATGTTTTTGCTTTCTATTTTTTTTTAAAAAAAATAATTATTACTTACAATAATCCAACGGGTATCCTCGTATGTGCCCATCCTACAAGTGATAAAATGATAAGTACCAGTCTACCATCAAGTTTGTAGGATAGAAACTATTTAGTATACATTGTTTTTGTCTTAATTTCTAGTTTTGGTATCCATCTAAATCGATACTCCATTATGTTAATTATTTCATTTCTTTCTTTTGACATCTACATCACTTTTTAATGTGGTTACCACTTGCTATAATCATACTTCACTTAGCATTTTATTTGAACTTAGTGAAAGTGAAATTTTTCCTAATAATTGGTCTAAAAATTGAAGAAGATTAAAGCCAAGAAATTGAGTTCTTCCTTCTTTCTTCCAACTTTGAAAGTACCGATAGATACTATCATATAAAAAGAAGAGGTGGTCTGACTAACTCAATGAAGTGAATTTTTCAAAAACATGCTCAGAAAAATGAGAAAAATGGAGTTTTTGAAAAGAAAAATTAACAGATATTTAAAGATAAATTTTTGAAATTTGGTTCAAAATTTATGGTCAAATATTAACTTATATTTATATATATACCTCTTCTAAAATGCTAATGAGAATTAGAATTTGCAGAGAGAAGAAATGGCAAAAGAATCCTACGATCAAGCCATTGCTGCACTCGAGAAACTCCTCAGGTTTGTACTCTCTCTACGACTCTACCTTCTAAATCACACTACTTTTTTCTCGATCAAGTGGGGCCCAAAAAATATACATACACCCACACATACGTAGACAAAAAAAATGTTAAAATTTGCGAATATGCAGAGAAAACATAATATAATCATGCAATGTTTACTCGTAAAATTCAATTTCCCGGCAATGAACATGTTACTTGGTTTCGAGTTCTCCAGATCTGCATTAATTTTACCATTCTATCATCATTTTTTTACCCCATATCTGCATTAATTTATCATGGTAATGGTGCTCAAACCACAAATCTTTTTTTTTTCTACCTGAAATATTGCTTCAATAATAATAATGGTCTAAATTATTTTCTGCAATTACAGCGAGAAAGCAGAACTTGGACCAGTTGCTGCAGCAAGAGTTGACCAGATCACTGCTGAATTGAAATCAGCAGACGGCGGCAAGGCATTCGACCCTGTTGAGCACATGAAAGCTGGCTTTATTCATTTCAAGACTGAGAAATATGAGTAAGCAAATTCATTCAAATTAAAATTTCTGCATATTTGATGTTGTAACATTATTAGTGTCTGATAATTTTTCCTGTTTTCTATTTATGTACCAACAGCACAAACCCAGCCTTATATGGTGAGCTAGCAAAGGGCCAGAGCCCTAAGGTACAAATTCCTTGTTAATTTGTTGTCTAATTTTATGATTTGTACGGTTTCTGATGAGTTCTATTGTCCTAAATGTGTAAACAGTTCATGGTTTTCGCGTGCTCTGACTCACGAGTCTGCCCATCCCATGTCCTCAACTTCCAACCTGGTGAGGCATTCATGGTTCGTAACATCGCCAACATGGTCCCTGCTTATGACAAGGTCAGTTACAAATCGATCAACTAGTCGATTATTTCGCTCTGGAATTGTGTTTTTTAAAAATAAAGATGGAATTGAATTTTTACAGGTCAGGTACTCTGGAGTAGGAGCAGCCATTGAATACGCCGTTCTTCATCTTAAGGTGGAGAACATCGTTGTCATTGGCCACAGTGCTTGTGGAGGTATCAAAGGTCTCATGTCACTACCTGAAGA</genome_strand>
        <mrna_strand>AGAAACGAGCCCGTCTTTGCTGCCCCTACTCCCATCATCAACCCCATTGTG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGAGAAGAAATGGCAAAAGAATCCTACGATCAAGCCATTGCTGCACTCGAGAAACTCCTCAG....................................................................................................................................................................................................................................................................................................................................................................................CGAGAAAGCAGAACTTGGACCAGTTGCTGCAGCAAGAGTTGACCAGATCACTGCTGAATTGAAATCAGCAGACGGCGGCAAGGCATTCGACCCTGTTGAGCACATGAAAGCTGGCTTTATTCATTTCAAGACTGAGAAATATGA..................................................................................................CACAAACCCAGCCTTATATGGTGAGCTAGCAAAGGGCCAGAGCCCTAAG....................................................................................TTCATGGTTTTCGCGTGCTCTGACTCACGAGTCTGCCCATCCCATGTCCTCAACTTCCAACCTGGTGAGGCATTCATGGTTCGTAACATCGCCAACATGGTCCCTGCTTATGACAAG.....................................................................................GTCAGGTACTCTGGAGTAGGAGCAGCCATTGAATACGCCGTTCTTCATCTTAAGGTGGAGAACATCGTTGTCATTGGCCACAGTGCTTGTGGAGGTATCAAAGGTCTCATGTCACTACCTGAAGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0236E02-u8qcS/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E296748" ref_strand="+" ref_description="SGN-E296748 [cLET-26-A11]">
      <seq>agaaacgagcccgtctttgctgcccctactgccatcatcaaccccattgtgagagaagaaatggcaaaagaatcctacgatcaagccattgctgcactcgagaaactcctcagcgagaaagcagaacttggaccagttgctgcagcaagagttgaccagatcactgctgaattgaaatcagcagacggcggcaaggcattcgaccctgttgagcacatgaaagctggctttattcatttcaagactgagaaatatgacacaaacccagccttatatggtgagctagcaaagggccagagccctaagttcatggttttcgcgtgctctgactcacgagtctgcccatcccatgtcctcaacttccaacctggtgaggcattcatggttcgtaacatcgccaacatggtccctgcttatgacaaggtcaggtactctggagtaggagcagccattgaatacgccgttcttcatcttaaggtggagaacatcggtgtcattggccacagtgcttgtggaggtatcaaaggtctcatgtcacta</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0236E02-u8qcS/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0236E02.1" temp_strand="+" temp_description="C02HBa0236E02.1  AC215430.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0236E02 sequenced_by:kribb upload_account_name:korea">
        <position start="14832" stop="17807"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="15132" g_stop="15182" g_length="51"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="51" r_length="51" r_score="0.980"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="15183" i_stop="16379" i_length="1197">
            <donor d_prob="1.000" d_score="0.98"/>
            <acceptor a_prob="0.971" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="16380" g_stop="16441" g_length="62"/>
          <reference_exon_boundary r_type="cDNA" r_start="52" r_stop="113" r_length="62" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="16442" i_stop="16813" i_length="372">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="16814" g_stop="16957" g_length="144"/>
          <reference_exon_boundary r_type="cDNA" r_start="114" r_stop="257" r_length="144" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="16958" i_stop="17055" i_length="98">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="17056" g_stop="17104" g_length="49"/>
          <reference_exon_boundary r_type="cDNA" r_start="258" r_stop="306" r_length="49" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="17105" i_stop="17188" i_length="84">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.961" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="17189" g_stop="17305" g_length="117"/>
          <reference_exon_boundary r_type="cDNA" r_start="307" r_stop="423" r_length="117" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="17306" i_stop="17390" i_length="85">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.979" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="17391" g_stop="17507" g_length="117"/>
          <reference_exon_boundary r_type="cDNA" r_start="424" r_stop="540" r_length="117" r_score="0.991"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0236E02.1" gen_strand="+" ref_id="SGN-E296748" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>540</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0236E02.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E296748" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="15132" e_stop="15182"/>
          <exon e_start="16380" e_stop="16441"/>
          <exon e_start="16814" e_stop="16957"/>
          <exon e_start="17056" e_stop="17104"/>
          <exon e_start="17189" e_stop="17305"/>
          <exon e_start="17391" e_stop="17507"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGAAACGAGCCCGTCTTTGCTGCCCCTACTCCCATCATCAACCCCATTGTGGTACGAATTTTTAACTTACATCACTGTATTTTAATCTGTTATAACAAGTTATTTATATTTGACGTTACTTAATTTATTTTTTAAGCAAGACATTTTTTTTGTCTTATCGTATTTTTTGTAACGACTTGTGTCCATGCATGCTAGTTCACGTGAAAATTCAATATTGGCATAGTTCTAAACTTTAGTTTCTAACCACCTTTATTATTGGTATTGTTATTTTTGGCCATGAATCTCCTGAAGTTAGGTGAATTGATCATGTCGCTCTAAATTGTACACGTCTATTGCGTGTACTCAATGACATATAATATATTATTGCAATCCTAAAATAAGTGTTATTTTAATTTATTTTGAACTCATTAAAATAAATATGATATTTTACTGAGTTACTTATATTTATTACTTTGATTTTTTTGAGTACTAATTTGTATTTTGAAACTTTTAAGATGACGAGAGGGTGGAAATAACAAATTAAATTTGAAAATGAACCAAAATAGAGGTGGCAATTAGGTAGAGGTTCTCGCAAAATGAATATTAAATATGTAGGGCCGTATTGTGAATTATGTGGATAATGTTTTTGCTTTCTATTTTTTTTTAAAAAAAATAATTATTACTTACAATAATCCAACGGGTATCCTCGTATGTGCCCATCCTACAAGTGATAAAATGATAAGTACCAGTCTACCATCAAGTTTGTAGGATAGAAACTATTTAGTATACATTGTTTTTGTCTTAATTTCTAGTTTTGGTATCCATCTAAATCGATACTCCATTATGTTAATTATTTCATTTCTTTCTTTTGACATCTACATCACTTTTTAATGTGGTTACCACTTGCTATAATCATACTTCACTTAGCATTTTATTTGAACTTAGTGAAAGTGAAATTTTTCCTAATAATTGGTCTAAAAATTGAAGAAGATTAAAGCCAAGAAATTGAGTTCTTCCTTCTTTCTTCCAACTTTGAAAGTACCGATAGATACTATCATATAAAAAGAAGAGGTGGTCTGACTAACTCAATGAAGTGAATTTTTCAAAAACATGCTCAGAAAAATGAGAAAAATGGAGTTTTTGAAAAGAAAAATTAACAGATATTTAAAGATAAATTTTTGAAATTTGGTTCAAAATTTATGGTCAAATATTAACTTATATTTATATATATACCTCTTCTAAAATGCTAATGAGAATTAGAATTTGCAGAGAGAAGAAATGGCAAAAGAATCCTACGATCAAGCCATTGCTGCACTCGAGAAACTCCTCAGGTTTGTACTCTCTCTACGACTCTACCTTCTAAATCACACTACTTTTTTCTCGATCAAGTGGGGCCCAAAAAATATACATACACCCACACATACGTAGACAAAAAAAATGTTAAAATTTGCGAATATGCAGAGAAAACATAATATAATCATGCAATGTTTACTCGTAAAATTCAATTTCCCGGCAATGAACATGTTACTTGGTTTCGAGTTCTCCAGATCTGCATTAATTTTACCATTCTATCATCATTTTTTTACCCCATATCTGCATTAATTTATCATGGTAATGGTGCTCAAACCACAAATCTTTTTTTTTTCTACCTGAAATATTGCTTCAATAATAATAATGGTCTAAATTATTTTCTGCAATTACAGCGAGAAAGCAGAACTTGGACCAGTTGCTGCAGCAAGAGTTGACCAGATCACTGCTGAATTGAAATCAGCAGACGGCGGCAAGGCATTCGACCCTGTTGAGCACATGAAAGCTGGCTTTATTCATTTCAAGACTGAGAAATATGAGTAAGCAAATTCATTCAAATTAAAATTTCTGCATATTTGATGTTGTAACATTATTAGTGTCTGATAATTTTTCCTGTTTTCTATTTATGTACCAACAGCACAAACCCAGCCTTATATGGTGAGCTAGCAAAGGGCCAGAGCCCTAAGGTACAAATTCCTTGTTAATTTGTTGTCTAATTTTATGATTTGTACGGTTTCTGATGAGTTCTATTGTCCTAAATGTGTAAACAGTTCATGGTTTTCGCGTGCTCTGACTCACGAGTCTGCCCATCCCATGTCCTCAACTTCCAACCTGGTGAGGCATTCATGGTTCGTAACATCGCCAACATGGTCCCTGCTTATGACAAGGTCAGTTACAAATCGATCAACTAGTCGATTATTTCGCTCTGGAATTGTGTTTTTTAAAAATAAAGATGGAATTGAATTTTTACAGGTCAGGTACTCTGGAGTAGGAGCAGCCATTGAATACGCCGTTCTTCATCTTAAGGTGGAGAACATCGTTGTCATTGGCCACAGTGCTTGTGGAGGTATCAAAGGTCTCATGTCACTA</genome_strand>
        <mrna_strand>AGAAACGAGCCCGTCTTTGCTGCCCCTACTGCCATCATCAACCCCATTGTG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGAGAAGAAATGGCAAAAGAATCCTACGATCAAGCCATTGCTGCACTCGAGAAACTCCTCAG....................................................................................................................................................................................................................................................................................................................................................................................CGAGAAAGCAGAACTTGGACCAGTTGCTGCAGCAAGAGTTGACCAGATCACTGCTGAATTGAAATCAGCAGACGGCGGCAAGGCATTCGACCCTGTTGAGCACATGAAAGCTGGCTTTATTCATTTCAAGACTGAGAAATATGA..................................................................................................CACAAACCCAGCCTTATATGGTGAGCTAGCAAAGGGCCAGAGCCCTAAG....................................................................................TTCATGGTTTTCGCGTGCTCTGACTCACGAGTCTGCCCATCCCATGTCCTCAACTTCCAACCTGGTGAGGCATTCATGGTTCGTAACATCGCCAACATGGTCCCTGCTTATGACAAG.....................................................................................GTCAGGTACTCTGGAGTAGGAGCAGCCATTGAATACGCCGTTCTTCATCTTAAGGTGGAGAACATCGGTGTCATTGGCCACAGTGCTTGTGGAGGTATCAAAGGTCTCATGTCACTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0236E02-u8qcS/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E299392" ref_strand="+" ref_description="SGN-E299392 [cLET-43-C22]">
      <seq>agaaacgagcccgtctttgctgcccctactcccatcatcaaccccattgtgagagaagaaatggcaaaagaatcctacgatcaagccattgctgcactcgagaaactcctcagcgagaaagcagaacttggaccagttgctgcagcaagagttgaccagatcactgctgaattgaaatcagcagacggcggcaaggcattcgaccctgttgagcacatgaaagctggctttattcatttcaagactgagaaatatgacacaaacccagccttatatggtgagctagcaaagggccagagccctaagttcatggttttcgcgtgctctgactcacgagtctgcccatcccatgtcctcaacttccaacctggtgaggcattcatggttcgtaacatcgccaacatggtccctgcttatgacaaggtcaggtactctggagtaggagcagccattgaatacgccgttcttcatcttaaggtggagaacatcgttgtcatt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0236E02-u8qcS/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0236E02.1" temp_strand="+" temp_description="C02HBa0236E02.1  AC215430.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0236E02 sequenced_by:kribb upload_account_name:korea">
        <position start="14832" stop="17765"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="15132" g_stop="15182" g_length="51"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="51" r_length="51" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="15183" i_stop="16379" i_length="1197">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.971" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="16380" g_stop="16441" g_length="62"/>
          <reference_exon_boundary r_type="cDNA" r_start="52" r_stop="113" r_length="62" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="16442" i_stop="16813" i_length="372">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="16814" g_stop="16957" g_length="144"/>
          <reference_exon_boundary r_type="cDNA" r_start="114" r_stop="257" r_length="144" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="16958" i_stop="17055" i_length="98">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="17056" g_stop="17104" g_length="49"/>
          <reference_exon_boundary r_type="cDNA" r_start="258" r_stop="306" r_length="49" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="17105" i_stop="17188" i_length="84">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.961" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="17189" g_stop="17305" g_length="117"/>
          <reference_exon_boundary r_type="cDNA" r_start="307" r_stop="423" r_length="117" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="17306" i_stop="17390" i_length="85">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.979" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="17391" g_stop="17465" g_length="75"/>
          <reference_exon_boundary r_type="cDNA" r_start="424" r_stop="498" r_length="75" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0236E02.1" gen_strand="+" ref_id="SGN-E299392" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>498</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0236E02.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E299392" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="15132" e_stop="15182"/>
          <exon e_start="16380" e_stop="16441"/>
          <exon e_start="16814" e_stop="16957"/>
          <exon e_start="17056" e_stop="17104"/>
          <exon e_start="17189" e_stop="17305"/>
          <exon e_start="17391" e_stop="17465"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGAAACGAGCCCGTCTTTGCTGCCCCTACTCCCATCATCAACCCCATTGTGGTACGAATTTTTAACTTACATCACTGTATTTTAATCTGTTATAACAAGTTATTTATATTTGACGTTACTTAATTTATTTTTTAAGCAAGACATTTTTTTTGTCTTATCGTATTTTTTGTAACGACTTGTGTCCATGCATGCTAGTTCACGTGAAAATTCAATATTGGCATAGTTCTAAACTTTAGTTTCTAACCACCTTTATTATTGGTATTGTTATTTTTGGCCATGAATCTCCTGAAGTTAGGTGAATTGATCATGTCGCTCTAAATTGTACACGTCTATTGCGTGTACTCAATGACATATAATATATTATTGCAATCCTAAAATAAGTGTTATTTTAATTTATTTTGAACTCATTAAAATAAATATGATATTTTACTGAGTTACTTATATTTATTACTTTGATTTTTTTGAGTACTAATTTGTATTTTGAAACTTTTAAGATGACGAGAGGGTGGAAATAACAAATTAAATTTGAAAATGAACCAAAATAGAGGTGGCAATTAGGTAGAGGTTCTCGCAAAATGAATATTAAATATGTAGGGCCGTATTGTGAATTATGTGGATAATGTTTTTGCTTTCTATTTTTTTTTAAAAAAAATAATTATTACTTACAATAATCCAACGGGTATCCTCGTATGTGCCCATCCTACAAGTGATAAAATGATAAGTACCAGTCTACCATCAAGTTTGTAGGATAGAAACTATTTAGTATACATTGTTTTTGTCTTAATTTCTAGTTTTGGTATCCATCTAAATCGATACTCCATTATGTTAATTATTTCATTTCTTTCTTTTGACATCTACATCACTTTTTAATGTGGTTACCACTTGCTATAATCATACTTCACTTAGCATTTTATTTGAACTTAGTGAAAGTGAAATTTTTCCTAATAATTGGTCTAAAAATTGAAGAAGATTAAAGCCAAGAAATTGAGTTCTTCCTTCTTTCTTCCAACTTTGAAAGTACCGATAGATACTATCATATAAAAAGAAGAGGTGGTCTGACTAACTCAATGAAGTGAATTTTTCAAAAACATGCTCAGAAAAATGAGAAAAATGGAGTTTTTGAAAAGAAAAATTAACAGATATTTAAAGATAAATTTTTGAAATTTGGTTCAAAATTTATGGTCAAATATTAACTTATATTTATATATATACCTCTTCTAAAATGCTAATGAGAATTAGAATTTGCAGAGAGAAGAAATGGCAAAAGAATCCTACGATCAAGCCATTGCTGCACTCGAGAAACTCCTCAGGTTTGTACTCTCTCTACGACTCTACCTTCTAAATCACACTACTTTTTTCTCGATCAAGTGGGGCCCAAAAAATATACATACACCCACACATACGTAGACAAAAAAAATGTTAAAATTTGCGAATATGCAGAGAAAACATAATATAATCATGCAATGTTTACTCGTAAAATTCAATTTCCCGGCAATGAACATGTTACTTGGTTTCGAGTTCTCCAGATCTGCATTAATTTTACCATTCTATCATCATTTTTTTACCCCATATCTGCATTAATTTATCATGGTAATGGTGCTCAAACCACAAATCTTTTTTTTTTCTACCTGAAATATTGCTTCAATAATAATAATGGTCTAAATTATTTTCTGCAATTACAGCGAGAAAGCAGAACTTGGACCAGTTGCTGCAGCAAGAGTTGACCAGATCACTGCTGAATTGAAATCAGCAGACGGCGGCAAGGCATTCGACCCTGTTGAGCACATGAAAGCTGGCTTTATTCATTTCAAGACTGAGAAATATGAGTAAGCAAATTCATTCAAATTAAAATTTCTGCATATTTGATGTTGTAACATTATTAGTGTCTGATAATTTTTCCTGTTTTCTATTTATGTACCAACAGCACAAACCCAGCCTTATATGGTGAGCTAGCAAAGGGCCAGAGCCCTAAGGTACAAATTCCTTGTTAATTTGTTGTCTAATTTTATGATTTGTACGGTTTCTGATGAGTTCTATTGTCCTAAATGTGTAAACAGTTCATGGTTTTCGCGTGCTCTGACTCACGAGTCTGCCCATCCCATGTCCTCAACTTCCAACCTGGTGAGGCATTCATGGTTCGTAACATCGCCAACATGGTCCCTGCTTATGACAAGGTCAGTTACAAATCGATCAACTAGTCGATTATTTCGCTCTGGAATTGTGTTTTTTAAAAATAAAGATGGAATTGAATTTTTACAGGTCAGGTACTCTGGAGTAGGAGCAGCCATTGAATACGCCGTTCTTCATCTTAAGGTGGAGAACATCGTTGTCATT</genome_strand>
        <mrna_strand>AGAAACGAGCCCGTCTTTGCTGCCCCTACTCCCATCATCAACCCCATTGTG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGAGAAGAAATGGCAAAAGAATCCTACGATCAAGCCATTGCTGCACTCGAGAAACTCCTCAG....................................................................................................................................................................................................................................................................................................................................................................................CGAGAAAGCAGAACTTGGACCAGTTGCTGCAGCAAGAGTTGACCAGATCACTGCTGAATTGAAATCAGCAGACGGCGGCAAGGCATTCGACCCTGTTGAGCACATGAAAGCTGGCTTTATTCATTTCAAGACTGAGAAATATGA..................................................................................................CACAAACCCAGCCTTATATGGTGAGCTAGCAAAGGGCCAGAGCCCTAAG....................................................................................TTCATGGTTTTCGCGTGCTCTGACTCACGAGTCTGCCCATCCCATGTCCTCAACTTCCAACCTGGTGAGGCATTCATGGTTCGTAACATCGCCAACATGGTCCCTGCTTATGACAAG.....................................................................................GTCAGGTACTCTGGAGTAGGAGCAGCCATTGAATACGCCGTTCTTCATCTTAAGGTGGAGAACATCGTTGTCATT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0236E02-u8qcS/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E283453" ref_strand="+" ref_description="SGN-E283453 [cLER-12-N7]">
      <seq>tttgctgcccctactcccatcatcaaccccattgtgagagaagaaatggcaaaagaatcctacgatcaagccattgctgcgctcaagaaacttcttcttgagacatctgaacttggaccatttgctgcagcaagagttgaccagatcactgctgaattgaaatcagcagacggcggcaaggcattcgaccctgttgagcacatgaaagctggctttattcatttcaagactgagaaatatgacacaaacccagccttatatggtgagctagcaaagggccagagccctaagttcatggttttcgcgtgctctgactcacgagtctgcccatcccatgtcctcaacttccaacctggtgaggcattcatggttcgtaacatcgccaacatggtccctgcttatgacaaggtcaggtactctggagtaggagcagccattgaatacgccgttcttcatcttaaggtggagaacatcgttgtcattggccacagtgcttgtggaggtatcaaaggtctcatgtcactacctgaagat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0236E02-u8qcS/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0236E02.1" temp_strand="+" temp_description="C02HBa0236E02.1  AC215430.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0236E02 sequenced_by:kribb upload_account_name:korea">
        <position start="14847" stop="17816"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="15147" g_stop="15182" g_length="36"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="36" r_length="36" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="15183" i_stop="16379" i_length="1197">
            <donor d_prob="1.000" d_score="0.00"/>
            <acceptor a_prob="0.971" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="16380" g_stop="16441" g_length="62"/>
          <reference_exon_boundary r_type="cDNA" r_start="37" r_stop="98" r_length="62" r_score="0.903"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="16442" i_stop="16813" i_length="372">
            <donor d_prob="0.999" d_score="0.88"/>
            <acceptor a_prob="1.000" a_score="0.90"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="16814" g_stop="16957" g_length="144"/>
          <reference_exon_boundary r_type="cDNA" r_start="99" r_stop="242" r_length="144" r_score="0.965"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="16958" i_stop="17055" i_length="98">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="17056" g_stop="17104" g_length="49"/>
          <reference_exon_boundary r_type="cDNA" r_start="243" r_stop="291" r_length="49" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="17105" i_stop="17188" i_length="84">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.961" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="17189" g_stop="17305" g_length="117"/>
          <reference_exon_boundary r_type="cDNA" r_start="292" r_stop="408" r_length="117" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="17306" i_stop="17390" i_length="85">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.979" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="17391" g_stop="17516" g_length="126"/>
          <reference_exon_boundary r_type="cDNA" r_start="409" r_stop="534" r_length="126" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0236E02.1" gen_strand="+" ref_id="SGN-E283453" ref_strand="+">
        <total_alignment_score>0.976</total_alignment_score>
        <cumulative_length_of_scored_exons>534</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0236E02.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E283453" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="15147" e_stop="15182"/>
          <exon e_start="16380" e_stop="16441"/>
          <exon e_start="16814" e_stop="16957"/>
          <exon e_start="17056" e_stop="17104"/>
          <exon e_start="17189" e_stop="17305"/>
          <exon e_start="17391" e_stop="17516"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTGCTGCCCCTACTCCCATCATCAACCCCATTGTGGTACGAATTTTTAACTTACATCACTGTATTTTAATCTGTTATAACAAGTTATTTATATTTGACGTTACTTAATTTATTTTTTAAGCAAGACATTTTTTTTGTCTTATCGTATTTTTTGTAACGACTTGTGTCCATGCATGCTAGTTCACGTGAAAATTCAATATTGGCATAGTTCTAAACTTTAGTTTCTAACCACCTTTATTATTGGTATTGTTATTTTTGGCCATGAATCTCCTGAAGTTAGGTGAATTGATCATGTCGCTCTAAATTGTACACGTCTATTGCGTGTACTCAATGACATATAATATATTATTGCAATCCTAAAATAAGTGTTATTTTAATTTATTTTGAACTCATTAAAATAAATATGATATTTTACTGAGTTACTTATATTTATTACTTTGATTTTTTTGAGTACTAATTTGTATTTTGAAACTTTTAAGATGACGAGAGGGTGGAAATAACAAATTAAATTTGAAAATGAACCAAAATAGAGGTGGCAATTAGGTAGAGGTTCTCGCAAAATGAATATTAAATATGTAGGGCCGTATTGTGAATTATGTGGATAATGTTTTTGCTTTCTATTTTTTTTTAAAAAAAATAATTATTACTTACAATAATCCAACGGGTATCCTCGTATGTGCCCATCCTACAAGTGATAAAATGATAAGTACCAGTCTACCATCAAGTTTGTAGGATAGAAACTATTTAGTATACATTGTTTTTGTCTTAATTTCTAGTTTTGGTATCCATCTAAATCGATACTCCATTATGTTAATTATTTCATTTCTTTCTTTTGACATCTACATCACTTTTTAATGTGGTTACCACTTGCTATAATCATACTTCACTTAGCATTTTATTTGAACTTAGTGAAAGTGAAATTTTTCCTAATAATTGGTCTAAAAATTGAAGAAGATTAAAGCCAAGAAATTGAGTTCTTCCTTCTTTCTTCCAACTTTGAAAGTACCGATAGATACTATCATATAAAAAGAAGAGGTGGTCTGACTAACTCAATGAAGTGAATTTTTCAAAAACATGCTCAGAAAAATGAGAAAAATGGAGTTTTTGAAAAGAAAAATTAACAGATATTTAAAGATAAATTTTTGAAATTTGGTTCAAAATTTATGGTCAAATATTAACTTATATTTATATATATACCTCTTCTAAAATGCTAATGAGAATTAGAATTTGCAGAGAGAAGAAATGGCAAAAGAATCCTACGATCAAGCCATTGCTGCACTCGAGAAACTCCTCAGGTTTGTACTCTCTCTACGACTCTACCTTCTAAATCACACTACTTTTTTCTCGATCAAGTGGGGCCCAAAAAATATACATACACCCACACATACGTAGACAAAAAAAATGTTAAAATTTGCGAATATGCAGAGAAAACATAATATAATCATGCAATGTTTACTCGTAAAATTCAATTTCCCGGCAATGAACATGTTACTTGGTTTCGAGTTCTCCAGATCTGCATTAATTTTACCATTCTATCATCATTTTTTTACCCCATATCTGCATTAATTTATCATGGTAATGGTGCTCAAACCACAAATCTTTTTTTTTTCTACCTGAAATATTGCTTCAATAATAATAATGGTCTAAATTATTTTCTGCAATTACAGCGAGAAAGCAGAACTTGGACCAGTTGCTGCAGCAAGAGTTGACCAGATCACTGCTGAATTGAAATCAGCAGACGGCGGCAAGGCATTCGACCCTGTTGAGCACATGAAAGCTGGCTTTATTCATTTCAAGACTGAGAAATATGAGTAAGCAAATTCATTCAAATTAAAATTTCTGCATATTTGATGTTGTAACATTATTAGTGTCTGATAATTTTTCCTGTTTTCTATTTATGTACCAACAGCACAAACCCAGCCTTATATGGTGAGCTAGCAAAGGGCCAGAGCCCTAAGGTACAAATTCCTTGTTAATTTGTTGTCTAATTTTATGATTTGTACGGTTTCTGATGAGTTCTATTGTCCTAAATGTGTAAACAGTTCATGGTTTTCGCGTGCTCTGACTCACGAGTCTGCCCATCCCATGTCCTCAACTTCCAACCTGGTGAGGCATTCATGGTTCGTAACATCGCCAACATGGTCCCTGCTTATGACAAGGTCAGTTACAAATCGATCAACTAGTCGATTATTTCGCTCTGGAATTGTGTTTTTTAAAAATAAAGATGGAATTGAATTTTTACAGGTCAGGTACTCTGGAGTAGGAGCAGCCATTGAATACGCCGTTCTTCATCTTAAGGTGGAGAACATCGTTGTCATTGGCCACAGTGCTTGTGGAGGTATCAAAGGTCTCATGTCACTACCTGAAGAT</genome_strand>
        <mrna_strand>TTTGCTGCCCCTACTCCCATCATCAACCCCATTGTG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGAGAAGAAATGGCAAAAGAATCCTACGATCAAGCCATTGCTGCGCTCAAGAAACTTCTTCT....................................................................................................................................................................................................................................................................................................................................................................................TGAGACATCTGAACTTGGACCATTTGCTGCAGCAAGAGTTGACCAGATCACTGCTGAATTGAAATCAGCAGACGGCGGCAAGGCATTCGACCCTGTTGAGCACATGAAAGCTGGCTTTATTCATTTCAAGACTGAGAAATATGA..................................................................................................CACAAACCCAGCCTTATATGGTGAGCTAGCAAAGGGCCAGAGCCCTAAG....................................................................................TTCATGGTTTTCGCGTGCTCTGACTCACGAGTCTGCCCATCCCATGTCCTCAACTTCCAACCTGGTGAGGCATTCATGGTTCGTAACATCGCCAACATGGTCCCTGCTTATGACAAG.....................................................................................GTCAGGTACTCTGGAGTAGGAGCAGCCATTGAATACGCCGTTCTTCATCTTAAGGTGGAGAACATCGTTGTCATTGGCCACAGTGCTTGTGGAGGTATCAAAGGTCTCATGTCACTACCTGAAGAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0236E02-u8qcS/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E372119" ref_strand="+" ref_description="SGN-E372119 [TUS-30-B12]">
      <seq>tcccatcatcaaccccattgtgagagaagaaatggcagaagaatcctacgatcaagccattgctgcactcgagaaactcctcagcgagaaagcagaacttggaccagttgctgcagcaagagttgaccagatcactgctgaattgaaatcagcagacggcggcaaggcattcgaccctgttgagcacatgaaagctggctttattcatttcaagactgagaaatatgacacaaacccagccttatatggtgagctagcaaagggccagagccctaagttcatggttttcgcgtgctctgactcacgagtctgcccatcccatgtcctcaacttccaacctggtgaggcattcatggttcgtaacatcgccaacatggtccctgcttatgacaaggtcaggtactctggagtaggagcagccattgaatacgccgttcttcatcttaaggtggagaacatcgttgtcattggccacagtgcttgtggaggtatcaaaggtctcatgtcactacctgaagatggtagtgaatcaactgcctttattgaggattgggtaaaaatttgtttacctgccaaggcaaaggttctggccgatcacggagggaaagaatttgcacatcaatgcacagcttgtgagaaggaagctgtgaacgtttcacttggaaatctgcttacgtatccattcgtgagagaaggattggtgaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0236E02-u8qcS/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0236E02.1" temp_strand="+" temp_description="C02HBa0236E02.1  AC215430.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0236E02 sequenced_by:kribb upload_account_name:korea">
        <position start="14861" stop="18158"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="15161" g_stop="15182" g_length="22"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="22" r_length="22" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="15183" i_stop="16379" i_length="1197">
            <donor d_prob="1.000" d_score="0.00"/>
            <acceptor a_prob="0.971" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="16380" g_stop="16441" g_length="62"/>
          <reference_exon_boundary r_type="cDNA" r_start="23" r_stop="84" r_length="62" r_score="0.984"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="16442" i_stop="16813" i_length="372">
            <donor d_prob="0.999" d_score="0.98"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="16814" g_stop="16957" g_length="144"/>
          <reference_exon_boundary r_type="cDNA" r_start="85" r_stop="228" r_length="144" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="16958" i_stop="17055" i_length="98">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="17056" g_stop="17104" g_length="49"/>
          <reference_exon_boundary r_type="cDNA" r_start="229" r_stop="277" r_length="49" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="17105" i_stop="17188" i_length="84">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.961" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="17189" g_stop="17305" g_length="117"/>
          <reference_exon_boundary r_type="cDNA" r_start="278" r_stop="394" r_length="117" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="17306" i_stop="17390" i_length="85">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.979" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="17391" g_stop="17530" g_length="140"/>
          <reference_exon_boundary r_type="cDNA" r_start="395" r_stop="534" r_length="140" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="17531" i_stop="17607" i_length="77">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.948" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="17608" g_stop="17713" g_length="106"/>
          <reference_exon_boundary r_type="cDNA" r_start="535" r_stop="640" r_length="106" r_score="1.000"/>
        </exon>
        <intron i_serial="7">
          <gDNA_intron_boundary i_start="17714" i_stop="17793" i_length="80">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="8">
          <gDNA_exon_boundary g_start="17794" g_stop="17858" g_length="65"/>
          <reference_exon_boundary r_type="cDNA" r_start="641" r_stop="705" r_length="65" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0236E02.1" gen_strand="+" ref_id="SGN-E372119" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>705</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0236E02.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E372119" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="15161" e_stop="15182"/>
          <exon e_start="16380" e_stop="16441"/>
          <exon e_start="16814" e_stop="16957"/>
          <exon e_start="17056" e_stop="17104"/>
          <exon e_start="17189" e_stop="17305"/>
          <exon e_start="17391" e_stop="17530"/>
          <exon e_start="17608" e_stop="17713"/>
          <exon e_start="17794" e_stop="17858"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCCCATCATCAACCCCATTGTGGTACGAATTTTTAACTTACATCACTGTATTTTAATCTGTTATAACAAGTTATTTATATTTGACGTTACTTAATTTATTTTTTAAGCAAGACATTTTTTTTGTCTTATCGTATTTTTTGTAACGACTTGTGTCCATGCATGCTAGTTCACGTGAAAATTCAATATTGGCATAGTTCTAAACTTTAGTTTCTAACCACCTTTATTATTGGTATTGTTATTTTTGGCCATGAATCTCCTGAAGTTAGGTGAATTGATCATGTCGCTCTAAATTGTACACGTCTATTGCGTGTACTCAATGACATATAATATATTATTGCAATCCTAAAATAAGTGTTATTTTAATTTATTTTGAACTCATTAAAATAAATATGATATTTTACTGAGTTACTTATATTTATTACTTTGATTTTTTTGAGTACTAATTTGTATTTTGAAACTTTTAAGATGACGAGAGGGTGGAAATAACAAATTAAATTTGAAAATGAACCAAAATAGAGGTGGCAATTAGGTAGAGGTTCTCGCAAAATGAATATTAAATATGTAGGGCCGTATTGTGAATTATGTGGATAATGTTTTTGCTTTCTATTTTTTTTTAAAAAAAATAATTATTACTTACAATAATCCAACGGGTATCCTCGTATGTGCCCATCCTACAAGTGATAAAATGATAAGTACCAGTCTACCATCAAGTTTGTAGGATAGAAACTATTTAGTATACATTGTTTTTGTCTTAATTTCTAGTTTTGGTATCCATCTAAATCGATACTCCATTATGTTAATTATTTCATTTCTTTCTTTTGACATCTACATCACTTTTTAATGTGGTTACCACTTGCTATAATCATACTTCACTTAGCATTTTATTTGAACTTAGTGAAAGTGAAATTTTTCCTAATAATTGGTCTAAAAATTGAAGAAGATTAAAGCCAAGAAATTGAGTTCTTCCTTCTTTCTTCCAACTTTGAAAGTACCGATAGATACTATCATATAAAAAGAAGAGGTGGTCTGACTAACTCAATGAAGTGAATTTTTCAAAAACATGCTCAGAAAAATGAGAAAAATGGAGTTTTTGAAAAGAAAAATTAACAGATATTTAAAGATAAATTTTTGAAATTTGGTTCAAAATTTATGGTCAAATATTAACTTATATTTATATATATACCTCTTCTAAAATGCTAATGAGAATTAGAATTTGCAGAGAGAAGAAATGGCAAAAGAATCCTACGATCAAGCCATTGCTGCACTCGAGAAACTCCTCAGGTTTGTACTCTCTCTACGACTCTACCTTCTAAATCACACTACTTTTTTCTCGATCAAGTGGGGCCCAAAAAATATACATACACCCACACATACGTAGACAAAAAAAATGTTAAAATTTGCGAATATGCAGAGAAAACATAATATAATCATGCAATGTTTACTCGTAAAATTCAATTTCCCGGCAATGAACATGTTACTTGGTTTCGAGTTCTCCAGATCTGCATTAATTTTACCATTCTATCATCATTTTTTTACCCCATATCTGCATTAATTTATCATGGTAATGGTGCTCAAACCACAAATCTTTTTTTTTTCTACCTGAAATATTGCTTCAATAATAATAATGGTCTAAATTATTTTCTGCAATTACAGCGAGAAAGCAGAACTTGGACCAGTTGCTGCAGCAAGAGTTGACCAGATCACTGCTGAATTGAAATCAGCAGACGGCGGCAAGGCATTCGACCCTGTTGAGCACATGAAAGCTGGCTTTATTCATTTCAAGACTGAGAAATATGAGTAAGCAAATTCATTCAAATTAAAATTTCTGCATATTTGATGTTGTAACATTATTAGTGTCTGATAATTTTTCCTGTTTTCTATTTATGTACCAACAGCACAAACCCAGCCTTATATGGTGAGCTAGCAAAGGGCCAGAGCCCTAAGGTACAAATTCCTTGTTAATTTGTTGTCTAATTTTATGATTTGTACGGTTTCTGATGAGTTCTATTGTCCTAAATGTGTAAACAGTTCATGGTTTTCGCGTGCTCTGACTCACGAGTCTGCCCATCCCATGTCCTCAACTTCCAACCTGGTGAGGCATTCATGGTTCGTAACATCGCCAACATGGTCCCTGCTTATGACAAGGTCAGTTACAAATCGATCAACTAGTCGATTATTTCGCTCTGGAATTGTGTTTTTTAAAAATAAAGATGGAATTGAATTTTTACAGGTCAGGTACTCTGGAGTAGGAGCAGCCATTGAATACGCCGTTCTTCATCTTAAGGTGGAGAACATCGTTGTCATTGGCCACAGTGCTTGTGGAGGTATCAAAGGTCTCATGTCACTACCTGAAGATGGTAGTGAATCAACGTACGTCACTCTATAAATCTATTCATTCAAAACACTTATCCTTAACAGATGATTGATTAATAATCTAATATACGCAGTGCCTTTATTGAGGATTGGGTAAAAATTTGTTTACCTGCCAAGGCAAAGGTTCTGGCCGATCACGGAGGGAAAGAATTTGCACATCAATGCACAGCTTGTGAGAAGGTAAAATTCAAATTTAACTTTTTGATTATCAATTAATTACATATATAGCAGTATTTTATAATTGATGAAAAATGTTGCAGGAAGCTGTGAACGTTTCACTTGGAAATCTGCTTACGTATCCATTCGTGAGAGAAGGATTGGTGAA</genome_strand>
        <mrna_strand>TCCCATCATCAACCCCATTGTG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGAGAAGAAATGGCAGAAGAATCCTACGATCAAGCCATTGCTGCACTCGAGAAACTCCTCAG....................................................................................................................................................................................................................................................................................................................................................................................CGAGAAAGCAGAACTTGGACCAGTTGCTGCAGCAAGAGTTGACCAGATCACTGCTGAATTGAAATCAGCAGACGGCGGCAAGGCATTCGACCCTGTTGAGCACATGAAAGCTGGCTTTATTCATTTCAAGACTGAGAAATATGA..................................................................................................CACAAACCCAGCCTTATATGGTGAGCTAGCAAAGGGCCAGAGCCCTAAG....................................................................................TTCATGGTTTTCGCGTGCTCTGACTCACGAGTCTGCCCATCCCATGTCCTCAACTTCCAACCTGGTGAGGCATTCATGGTTCGTAACATCGCCAACATGGTCCCTGCTTATGACAAG.....................................................................................GTCAGGTACTCTGGAGTAGGAGCAGCCATTGAATACGCCGTTCTTCATCTTAAGGTGGAGAACATCGTTGTCATTGGCCACAGTGCTTGTGGAGGTATCAAAGGTCTCATGTCACTACCTGAAGATGGTAGTGAATCAAC.............................................................................TGCCTTTATTGAGGATTGGGTAAAAATTTGTTTACCTGCCAAGGCAAAGGTTCTGGCCGATCACGGAGGGAAAGAATTTGCACATCAATGCACAGCTTGTGAGAAG................................................................................GAAGCTGTGAACGTTTCACTTGGAAATCTGCTTACGTATCCATTCGTGAGAGAAGGATTGGTGAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0236E02-u8qcS/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E366716" ref_strand="+" ref_description="SGN-E366716 [cLPT-17-G4]">
      <seq>tcatcaaccccattgtgagagaagaaatggcaaaagaatcctacgatcaggccgttgctgcactcgagaaactcctcagcgagaaagcagaacttggaccagttgctgcagcaagagttgaccagatcactgctgaattgaaatcagcagatggcggcaaggcattcgaccctgttgagcacatgaaagctggctttattcatttcaagactgagaaatatgatacaaacccagccttatatggtgaactagcaaagggccagagcccaaagttcatggttttcgcgtgctctgactcacgagtgtgcccatcccatgtcctcaacttccaacctggtgaggcattcatggttcgtaacatcgccaacatggtccctgcttatgacaaggtcaggtactctggagtaggagcagccattgaatacgccgttcttcatcttaaggtggagaacatcgttgtcattggccacagtgcttgtggaggtatcaaaggtctcatgtcactacctgaaga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0236E02-u8qcS/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0236E02.1" temp_strand="+" temp_description="C02HBa0236E02.1  AC215430.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0236E02 sequenced_by:kribb upload_account_name:korea">
        <position start="14866" stop="17815"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="15166" g_stop="15182" g_length="17"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="17" r_length="17" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="15183" i_stop="16379" i_length="1197">
            <donor d_prob="1.000" d_score="0.00"/>
            <acceptor a_prob="0.971" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="16380" g_stop="16441" g_length="62"/>
          <reference_exon_boundary r_type="cDNA" r_start="18" r_stop="79" r_length="62" r_score="0.968"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="16442" i_stop="16813" i_length="372">
            <donor d_prob="0.999" d_score="0.96"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="16814" g_stop="16957" g_length="144"/>
          <reference_exon_boundary r_type="cDNA" r_start="80" r_stop="223" r_length="144" r_score="0.993"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="16958" i_stop="17055" i_length="98">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="17056" g_stop="17104" g_length="49"/>
          <reference_exon_boundary r_type="cDNA" r_start="224" r_stop="272" r_length="49" r_score="0.939"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="17105" i_stop="17188" i_length="84">
            <donor d_prob="1.000" d_score="0.94"/>
            <acceptor a_prob="0.961" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="17189" g_stop="17305" g_length="117"/>
          <reference_exon_boundary r_type="cDNA" r_start="273" r_stop="389" r_length="117" r_score="0.991"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="17306" i_stop="17390" i_length="85">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.979" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="17391" g_stop="17515" g_length="125"/>
          <reference_exon_boundary r_type="cDNA" r_start="390" r_stop="514" r_length="125" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0236E02.1" gen_strand="+" ref_id="SGN-E366716" ref_strand="+">
        <total_alignment_score>0.991</total_alignment_score>
        <cumulative_length_of_scored_exons>514</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0236E02.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E366716" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="15166" e_stop="15182"/>
          <exon e_start="16380" e_stop="16441"/>
          <exon e_start="16814" e_stop="16957"/>
          <exon e_start="17056" e_stop="17104"/>
          <exon e_start="17189" e_stop="17305"/>
          <exon e_start="17391" e_stop="17515"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCATCAACCCCATTGTGGTACGAATTTTTAACTTACATCACTGTATTTTAATCTGTTATAACAAGTTATTTATATTTGACGTTACTTAATTTATTTTTTAAGCAAGACATTTTTTTTGTCTTATCGTATTTTTTGTAACGACTTGTGTCCATGCATGCTAGTTCACGTGAAAATTCAATATTGGCATAGTTCTAAACTTTAGTTTCTAACCACCTTTATTATTGGTATTGTTATTTTTGGCCATGAATCTCCTGAAGTTAGGTGAATTGATCATGTCGCTCTAAATTGTACACGTCTATTGCGTGTACTCAATGACATATAATATATTATTGCAATCCTAAAATAAGTGTTATTTTAATTTATTTTGAACTCATTAAAATAAATATGATATTTTACTGAGTTACTTATATTTATTACTTTGATTTTTTTGAGTACTAATTTGTATTTTGAAACTTTTAAGATGACGAGAGGGTGGAAATAACAAATTAAATTTGAAAATGAACCAAAATAGAGGTGGCAATTAGGTAGAGGTTCTCGCAAAATGAATATTAAATATGTAGGGCCGTATTGTGAATTATGTGGATAATGTTTTTGCTTTCTATTTTTTTTTAAAAAAAATAATTATTACTTACAATAATCCAACGGGTATCCTCGTATGTGCCCATCCTACAAGTGATAAAATGATAAGTACCAGTCTACCATCAAGTTTGTAGGATAGAAACTATTTAGTATACATTGTTTTTGTCTTAATTTCTAGTTTTGGTATCCATCTAAATCGATACTCCATTATGTTAATTATTTCATTTCTTTCTTTTGACATCTACATCACTTTTTAATGTGGTTACCACTTGCTATAATCATACTTCACTTAGCATTTTATTTGAACTTAGTGAAAGTGAAATTTTTCCTAATAATTGGTCTAAAAATTGAAGAAGATTAAAGCCAAGAAATTGAGTTCTTCCTTCTTTCTTCCAACTTTGAAAGTACCGATAGATACTATCATATAAAAAGAAGAGGTGGTCTGACTAACTCAATGAAGTGAATTTTTCAAAAACATGCTCAGAAAAATGAGAAAAATGGAGTTTTTGAAAAGAAAAATTAACAGATATTTAAAGATAAATTTTTGAAATTTGGTTCAAAATTTATGGTCAAATATTAACTTATATTTATATATATACCTCTTCTAAAATGCTAATGAGAATTAGAATTTGCAGAGAGAAGAAATGGCAAAAGAATCCTACGATCAAGCCATTGCTGCACTCGAGAAACTCCTCAGGTTTGTACTCTCTCTACGACTCTACCTTCTAAATCACACTACTTTTTTCTCGATCAAGTGGGGCCCAAAAAATATACATACACCCACACATACGTAGACAAAAAAAATGTTAAAATTTGCGAATATGCAGAGAAAACATAATATAATCATGCAATGTTTACTCGTAAAATTCAATTTCCCGGCAATGAACATGTTACTTGGTTTCGAGTTCTCCAGATCTGCATTAATTTTACCATTCTATCATCATTTTTTTACCCCATATCTGCATTAATTTATCATGGTAATGGTGCTCAAACCACAAATCTTTTTTTTTTCTACCTGAAATATTGCTTCAATAATAATAATGGTCTAAATTATTTTCTGCAATTACAGCGAGAAAGCAGAACTTGGACCAGTTGCTGCAGCAAGAGTTGACCAGATCACTGCTGAATTGAAATCAGCAGACGGCGGCAAGGCATTCGACCCTGTTGAGCACATGAAAGCTGGCTTTATTCATTTCAAGACTGAGAAATATGAGTAAGCAAATTCATTCAAATTAAAATTTCTGCATATTTGATGTTGTAACATTATTAGTGTCTGATAATTTTTCCTGTTTTCTATTTATGTACCAACAGCACAAACCCAGCCTTATATGGTGAGCTAGCAAAGGGCCAGAGCCCTAAGGTACAAATTCCTTGTTAATTTGTTGTCTAATTTTATGATTTGTACGGTTTCTGATGAGTTCTATTGTCCTAAATGTGTAAACAGTTCATGGTTTTCGCGTGCTCTGACTCACGAGTCTGCCCATCCCATGTCCTCAACTTCCAACCTGGTGAGGCATTCATGGTTCGTAACATCGCCAACATGGTCCCTGCTTATGACAAGGTCAGTTACAAATCGATCAACTAGTCGATTATTTCGCTCTGGAATTGTGTTTTTTAAAAATAAAGATGGAATTGAATTTTTACAGGTCAGGTACTCTGGAGTAGGAGCAGCCATTGAATACGCCGTTCTTCATCTTAAGGTGGAGAACATCGTTGTCATTGGCCACAGTGCTTGTGGAGGTATCAAAGGTCTCATGTCACTACCTGAAGA</genome_strand>
        <mrna_strand>TCATCAACCCCATTGTG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGAGAAGAAATGGCAAAAGAATCCTACGATCAGGCCGTTGCTGCACTCGAGAAACTCCTCAG....................................................................................................................................................................................................................................................................................................................................................................................CGAGAAAGCAGAACTTGGACCAGTTGCTGCAGCAAGAGTTGACCAGATCACTGCTGAATTGAAATCAGCAGATGGCGGCAAGGCATTCGACCCTGTTGAGCACATGAAAGCTGGCTTTATTCATTTCAAGACTGAGAAATATGA..................................................................................................TACAAACCCAGCCTTATATGGTGAACTAGCAAAGGGCCAGAGCCCAAAG....................................................................................TTCATGGTTTTCGCGTGCTCTGACTCACGAGTGTGCCCATCCCATGTCCTCAACTTCCAACCTGGTGAGGCATTCATGGTTCGTAACATCGCCAACATGGTCCCTGCTTATGACAAG.....................................................................................GTCAGGTACTCTGGAGTAGGAGCAGCCATTGAATACGCCGTTCTTCATCTTAAGGTGGAGAACATCGTTGTCATTGGCCACAGTGCTTGTGGAGGTATCAAAGGTCTCATGTCACTACCTGAAGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0236E02-u8qcS/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E282909" ref_strand="+" ref_description="SGN-E282909 [cLER-15-L10]">
      <seq>tcccatcatgaaccccattgtgagagaagaaatggcagaagaatcctacgatcaagccattgctgcactcgagaaactcctcagcgagaaagcagaacttggaccagttgctgcagcaagagttgaccagatcactgctgaattgaaatcagcagacggcggcaaggcattcgaccctgttgagcacatgaaagctggctttattcatttcaagactgagaaatatgacacaaacccagccttatatggtgagctagcaaagggccagagccctaagttcatggttttcgcgtgctctgactcacgagtctgtccatcccatgtcctcaacttacaacctggtgaggcattcatggctcgtaacatcgccaacatggtccctgcttatgacaaggtcaggtactctggagtaggagcagccattgaatacgccggtcttcatcttaaggtggagaaca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0236E02-u8qcS/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0236E02.1" temp_strand="+" temp_description="C02HBa0236E02.1  AC215430.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0236E02 sequenced_by:kribb upload_account_name:korea">
        <position start="16079" stop="17754"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="16380" g_stop="16441" g_length="62"/>
          <reference_exon_boundary r_type="cDNA" r_start="23" r_stop="84" r_length="62" r_score="0.984"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="16442" i_stop="16813" i_length="372">
            <donor d_prob="0.999" d_score="0.98"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="16814" g_stop="16957" g_length="144"/>
          <reference_exon_boundary r_type="cDNA" r_start="85" r_stop="228" r_length="144" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="16958" i_stop="17055" i_length="98">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="17056" g_stop="17104" g_length="49"/>
          <reference_exon_boundary r_type="cDNA" r_start="229" r_stop="277" r_length="49" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="17105" i_stop="17188" i_length="84">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.961" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="17189" g_stop="17305" g_length="117"/>
          <reference_exon_boundary r_type="cDNA" r_start="278" r_stop="394" r_length="117" r_score="0.974"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="17306" i_stop="17390" i_length="85">
            <donor d_prob="0.999" d_score="0.98"/>
            <acceptor a_prob="0.979" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="17391" g_stop="17454" g_length="64"/>
          <reference_exon_boundary r_type="cDNA" r_start="395" r_stop="458" r_length="64" r_score="0.984"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0236E02.1" gen_strand="+" ref_id="SGN-E282909" ref_strand="+">
        <total_alignment_score>0.987</total_alignment_score>
        <cumulative_length_of_scored_exons>436</cumulative_length_of_scored_exons>
        <coverage percentage="0.952" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0236E02.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E282909" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="16380" e_stop="16441"/>
          <exon e_start="16814" e_stop="16957"/>
          <exon e_start="17056" e_stop="17104"/>
          <exon e_start="17189" e_stop="17305"/>
          <exon e_start="17391" e_stop="17454"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGAGAAGAAATGGCAAAAGAATCCTACGATCAAGCCATTGCTGCACTCGAGAAACTCCTCAGGTTTGTACTCTCTCTACGACTCTACCTTCTAAATCACACTACTTTTTTCTCGATCAAGTGGGGCCCAAAAAATATACATACACCCACACATACGTAGACAAAAAAAATGTTAAAATTTGCGAATATGCAGAGAAAACATAATATAATCATGCAATGTTTACTCGTAAAATTCAATTTCCCGGCAATGAACATGTTACTTGGTTTCGAGTTCTCCAGATCTGCATTAATTTTACCATTCTATCATCATTTTTTTACCCCATATCTGCATTAATTTATCATGGTAATGGTGCTCAAACCACAAATCTTTTTTTTTTCTACCTGAAATATTGCTTCAATAATAATAATGGTCTAAATTATTTTCTGCAATTACAGCGAGAAAGCAGAACTTGGACCAGTTGCTGCAGCAAGAGTTGACCAGATCACTGCTGAATTGAAATCAGCAGACGGCGGCAAGGCATTCGACCCTGTTGAGCACATGAAAGCTGGCTTTATTCATTTCAAGACTGAGAAATATGAGTAAGCAAATTCATTCAAATTAAAATTTCTGCATATTTGATGTTGTAACATTATTAGTGTCTGATAATTTTTCCTGTTTTCTATTTATGTACCAACAGCACAAACCCAGCCTTATATGGTGAGCTAGCAAAGGGCCAGAGCCCTAAGGTACAAATTCCTTGTTAATTTGTTGTCTAATTTTATGATTTGTACGGTTTCTGATGAGTTCTATTGTCCTAAATGTGTAAACAGTTCATGGTTTTCGCGTGCTCTGACTCACGAGTCTGCCCATCCCATGTCCTCAACTTCCAACCTGGTGAGGCATTCATGGTTCGTAACATCGCCAACATGGTCCCTGCTTATGACAAGGTCAGTTACAAATCGATCAACTAGTCGATTATTTCGCTCTGGAATTGTGTTTTTTAAAAATAAAGATGGAATTGAATTTTTACAGGTCAGGTACTCTGGAGTAGGAGCAGCCATTGAATACGCCGTTCTTCATCTTAAGGTGGAGAACA</genome_strand>
        <mrna_strand>AGAGAAGAAATGGCAGAAGAATCCTACGATCAAGCCATTGCTGCACTCGAGAAACTCCTCAG....................................................................................................................................................................................................................................................................................................................................................................................CGAGAAAGCAGAACTTGGACCAGTTGCTGCAGCAAGAGTTGACCAGATCACTGCTGAATTGAAATCAGCAGACGGCGGCAAGGCATTCGACCCTGTTGAGCACATGAAAGCTGGCTTTATTCATTTCAAGACTGAGAAATATGA..................................................................................................CACAAACCCAGCCTTATATGGTGAGCTAGCAAAGGGCCAGAGCCCTAAG....................................................................................TTCATGGTTTTCGCGTGCTCTGACTCACGAGTCTGTCCATCCCATGTCCTCAACTTACAACCTGGTGAGGCATTCATGGCTCGTAACATCGCCAACATGGTCCCTGCTTATGACAAG.....................................................................................GTCAGGTACTCTGGAGTAGGAGCAGCCATTGAATACGCCGGTCTTCATCTTAAGGTGGAGAACA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0236E02-u8qcS/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E278884" ref_strand="+" ref_description="SGN-E278884 [cLER-2-E21]">
      <seq>aaccccattgtgagagaagaaatggcaaaagaatcctacgatcaagccattgctgcactcgagaaactcctcagcgagaaagcagaacttggaccagttgctgcagcaagagttgaccagatcactgctgaattgaaatcagcagacggcggcaaggcattcgaccctgttgagcacatgaaagctggctttattcatttcaagactgagaaatatgacacaaacccagccttatatggtgagctagcaaagggccagagccctaagttcatgggtttcgcgtgctctgactcacgagtctgcccatcccatgtcctcaacttccaacctggtgaggcattcatggttcgtaacatcgccaacatggtccctgcttatgacaaggtcaggtactctggagtaggagcagccattgaatac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0236E02-u8qcS/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0236E02.1" temp_strand="+" temp_description="C02HBa0236E02.1  AC215430.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0236E02 sequenced_by:kribb upload_account_name:korea">
        <position start="16079" stop="17726"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="16380" g_stop="16441" g_length="62"/>
          <reference_exon_boundary r_type="cDNA" r_start="13" r_stop="74" r_length="62" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="16442" i_stop="16813" i_length="372">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="16814" g_stop="16957" g_length="144"/>
          <reference_exon_boundary r_type="cDNA" r_start="75" r_stop="218" r_length="144" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="16958" i_stop="17055" i_length="98">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="17056" g_stop="17104" g_length="49"/>
          <reference_exon_boundary r_type="cDNA" r_start="219" r_stop="267" r_length="49" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="17105" i_stop="17188" i_length="84">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.961" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="17189" g_stop="17305" g_length="117"/>
          <reference_exon_boundary r_type="cDNA" r_start="268" r_stop="384" r_length="117" r_score="0.991"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="17306" i_stop="17390" i_length="85">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.979" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="17391" g_stop="17426" g_length="36"/>
          <reference_exon_boundary r_type="cDNA" r_start="385" r_stop="420" r_length="36" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0236E02.1" gen_strand="+" ref_id="SGN-E278884" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>408</cumulative_length_of_scored_exons>
        <coverage percentage="0.971" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0236E02.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E278884" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="16380" e_stop="16441"/>
          <exon e_start="16814" e_stop="16957"/>
          <exon e_start="17056" e_stop="17104"/>
          <exon e_start="17189" e_stop="17305"/>
          <exon e_start="17391" e_stop="17426"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGAGAAGAAATGGCAAAAGAATCCTACGATCAAGCCATTGCTGCACTCGAGAAACTCCTCAGGTTTGTACTCTCTCTACGACTCTACCTTCTAAATCACACTACTTTTTTCTCGATCAAGTGGGGCCCAAAAAATATACATACACCCACACATACGTAGACAAAAAAAATGTTAAAATTTGCGAATATGCAGAGAAAACATAATATAATCATGCAATGTTTACTCGTAAAATTCAATTTCCCGGCAATGAACATGTTACTTGGTTTCGAGTTCTCCAGATCTGCATTAATTTTACCATTCTATCATCATTTTTTTACCCCATATCTGCATTAATTTATCATGGTAATGGTGCTCAAACCACAAATCTTTTTTTTTTCTACCTGAAATATTGCTTCAATAATAATAATGGTCTAAATTATTTTCTGCAATTACAGCGAGAAAGCAGAACTTGGACCAGTTGCTGCAGCAAGAGTTGACCAGATCACTGCTGAATTGAAATCAGCAGACGGCGGCAAGGCATTCGACCCTGTTGAGCACATGAAAGCTGGCTTTATTCATTTCAAGACTGAGAAATATGAGTAAGCAAATTCATTCAAATTAAAATTTCTGCATATTTGATGTTGTAACATTATTAGTGTCTGATAATTTTTCCTGTTTTCTATTTATGTACCAACAGCACAAACCCAGCCTTATATGGTGAGCTAGCAAAGGGCCAGAGCCCTAAGGTACAAATTCCTTGTTAATTTGTTGTCTAATTTTATGATTTGTACGGTTTCTGATGAGTTCTATTGTCCTAAATGTGTAAACAGTTCATGGTTTTCGCGTGCTCTGACTCACGAGTCTGCCCATCCCATGTCCTCAACTTCCAACCTGGTGAGGCATTCATGGTTCGTAACATCGCCAACATGGTCCCTGCTTATGACAAGGTCAGTTACAAATCGATCAACTAGTCGATTATTTCGCTCTGGAATTGTGTTTTTTAAAAATAAAGATGGAATTGAATTTTTACAGGTCAGGTACTCTGGAGTAGGAGCAGCCATTGAATAC</genome_strand>
        <mrna_strand>AGAGAAGAAATGGCAAAAGAATCCTACGATCAAGCCATTGCTGCACTCGAGAAACTCCTCAG....................................................................................................................................................................................................................................................................................................................................................................................CGAGAAAGCAGAACTTGGACCAGTTGCTGCAGCAAGAGTTGACCAGATCACTGCTGAATTGAAATCAGCAGACGGCGGCAAGGCATTCGACCCTGTTGAGCACATGAAAGCTGGCTTTATTCATTTCAAGACTGAGAAATATGA..................................................................................................CACAAACCCAGCCTTATATGGTGAGCTAGCAAAGGGCCAGAGCCCTAAG....................................................................................TTCATGGGTTTCGCGTGCTCTGACTCACGAGTCTGCCCATCCCATGTCCTCAACTTCCAACCTGGTGAGGCATTCATGGTTCGTAACATCGCCAACATGGTCCCTGCTTATGACAAG.....................................................................................GTCAGGTACTCTGGAGTAGGAGCAGCCATTGAATAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0236E02-u8qcS/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E289724" ref_strand="+" ref_description="SGN-E289724 [cLET-4-H17]">
      <seq>aaccccattgtgagagaagaaatggcaaaagaatcctacgatcaagccattgctgcactcgagaaactcctcagcgagaaagcagaacttggaccagttgctgcagcaagagttgaccagatcactgctgaattgaaatcagcagacggcggcaaggcattcgacccttgtgagcacatgaaagctggctttattcatttcaagactgagaaatatgacacaaaccc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0236E02-u8qcS/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0236E02.1" temp_strand="+" temp_description="C02HBa0236E02.1  AC215430.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0236E02 sequenced_by:kribb upload_account_name:korea">
        <position start="16079" stop="17257"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="16380" g_stop="16441" g_length="62"/>
          <reference_exon_boundary r_type="cDNA" r_start="13" r_stop="74" r_length="62" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="16442" i_stop="16813" i_length="372">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="16814" g_stop="16957" g_length="144"/>
          <reference_exon_boundary r_type="cDNA" r_start="75" r_stop="218" r_length="144" r_score="0.986"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="16958" i_stop="17055" i_length="98">
            <donor d_prob="0.999" d_score="0.96"/>
            <acceptor a_prob="0.999" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="17056" g_stop="17064" g_length="9"/>
          <reference_exon_boundary r_type="cDNA" r_start="219" r_stop="227" r_length="9" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0236E02.1" gen_strand="+" ref_id="SGN-E289724" ref_strand="+">
        <total_alignment_score>0.990</total_alignment_score>
        <cumulative_length_of_scored_exons>215</cumulative_length_of_scored_exons>
        <coverage percentage="0.947" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0236E02.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E289724" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="16380" e_stop="16441"/>
          <exon e_start="16814" e_stop="16957"/>
          <exon e_start="17056" e_stop="17064"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGAGAAGAAATGGCAAAAGAATCCTACGATCAAGCCATTGCTGCACTCGAGAAACTCCTCAGGTTTGTACTCTCTCTACGACTCTACCTTCTAAATCACACTACTTTTTTCTCGATCAAGTGGGGCCCAAAAAATATACATACACCCACACATACGTAGACAAAAAAAATGTTAAAATTTGCGAATATGCAGAGAAAACATAATATAATCATGCAATGTTTACTCGTAAAATTCAATTTCCCGGCAATGAACATGTTACTTGGTTTCGAGTTCTCCAGATCTGCATTAATTTTACCATTCTATCATCATTTTTTTACCCCATATCTGCATTAATTTATCATGGTAATGGTGCTCAAACCACAAATCTTTTTTTTTTCTACCTGAAATATTGCTTCAATAATAATAATGGTCTAAATTATTTTCTGCAATTACAGCGAGAAAGCAGAACTTGGACCAGTTGCTGCAGCAAGAGTTGACCAGATCACTGCTGAATTGAAATCAGCAGACGGCGGCAAGGCATTCGACCCTGTTGAGCACATGAAAGCTGGCTTTATTCATTTCAAGACTGAGAAATATGAGTAAGCAAATTCATTCAAATTAAAATTTCTGCATATTTGATGTTGTAACATTATTAGTGTCTGATAATTTTTCCTGTTTTCTATTTATGTACCAACAGCACAAACCC</genome_strand>
        <mrna_strand>AGAGAAGAAATGGCAAAAGAATCCTACGATCAAGCCATTGCTGCACTCGAGAAACTCCTCAG....................................................................................................................................................................................................................................................................................................................................................................................CGAGAAAGCAGAACTTGGACCAGTTGCTGCAGCAAGAGTTGACCAGATCACTGCTGAATTGAAATCAGCAGACGGCGGCAAGGCATTCGACCCTTGTGAGCACATGAAAGCTGGCTTTATTCATTTCAAGACTGAGAAATATGA..................................................................................................CACAAACCC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0236E02-u8qcS/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E471224" ref_strand="+" ref_description="SGN-E471224 [cSTB-23-A4]">
      <seq>gaagaaatggcaaaagaatcctacgatcaggccattgctgcactcgagaaactcctcagtgagaaagcagaacttggaccagttgctgcagcaagagttgaccagattactgctgaattgaaatcagcagatggcagcaaggccttcgaccctgttgagcacatgaaagctggctttattcatttcaaaactgagaaatatgatacaaacc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0236E02-u8qcS/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0236E02.1" temp_strand="+" temp_description="C02HBa0236E02.1  AC215430.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0236E02 sequenced_by:kribb upload_account_name:korea">
        <position start="16083" stop="17260"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="16383" g_stop="16441" g_length="59"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="59" r_length="59" r_score="0.983"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="16442" i_stop="16813" i_length="372">
            <donor d_prob="0.999" d_score="0.98"/>
            <acceptor a_prob="1.000" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="16814" g_stop="16957" g_length="144"/>
          <reference_exon_boundary r_type="cDNA" r_start="60" r_stop="203" r_length="144" r_score="0.958"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="16958" i_stop="17055" i_length="98">
            <donor d_prob="0.999" d_score="0.98"/>
            <acceptor a_prob="0.999" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="17056" g_stop="17063" g_length="8"/>
          <reference_exon_boundary r_type="cDNA" r_start="204" r_stop="211" r_length="8" r_score="0.875"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0236E02.1" gen_strand="+" ref_id="SGN-E471224" ref_strand="+">
        <total_alignment_score>0.966</total_alignment_score>
        <cumulative_length_of_scored_exons>211</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0236E02.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E471224" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="16383" e_stop="16441"/>
          <exon e_start="16814" e_stop="16957"/>
          <exon e_start="17056" e_stop="17063"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAAGAAATGGCAAAAGAATCCTACGATCAAGCCATTGCTGCACTCGAGAAACTCCTCAGGTTTGTACTCTCTCTACGACTCTACCTTCTAAATCACACTACTTTTTTCTCGATCAAGTGGGGCCCAAAAAATATACATACACCCACACATACGTAGACAAAAAAAATGTTAAAATTTGCGAATATGCAGAGAAAACATAATATAATCATGCAATGTTTACTCGTAAAATTCAATTTCCCGGCAATGAACATGTTACTTGGTTTCGAGTTCTCCAGATCTGCATTAATTTTACCATTCTATCATCATTTTTTTACCCCATATCTGCATTAATTTATCATGGTAATGGTGCTCAAACCACAAATCTTTTTTTTTTCTACCTGAAATATTGCTTCAATAATAATAATGGTCTAAATTATTTTCTGCAATTACAGCGAGAAAGCAGAACTTGGACCAGTTGCTGCAGCAAGAGTTGACCAGATCACTGCTGAATTGAAATCAGCAGACGGCGGCAAGGCATTCGACCCTGTTGAGCACATGAAAGCTGGCTTTATTCATTTCAAGACTGAGAAATATGAGTAAGCAAATTCATTCAAATTAAAATTTCTGCATATTTGATGTTGTAACATTATTAGTGTCTGATAATTTTTCCTGTTTTCTATTTATGTACCAACAGCACAAACC</genome_strand>
        <mrna_strand>GAAGAAATGGCAAAAGAATCCTACGATCAGGCCATTGCTGCACTCGAGAAACTCCTCAG....................................................................................................................................................................................................................................................................................................................................................................................TGAGAAAGCAGAACTTGGACCAGTTGCTGCAGCAAGAGTTGACCAGATTACTGCTGAATTGAAATCAGCAGATGGCAGCAAGGCCTTCGACCCTGTTGAGCACATGAAAGCTGGCTTTATTCATTTCAAAACTGAGAAATATGA..................................................................................................TACAAACC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0236E02-u8qcS/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E728631" ref_strand="+" ref_description="SGN-E728631 [LA18BG07]">
      <seq>acagaatcctacgatcaagccattgctgcactcgagaaactcctcagcgagaaagcagaacttggaccagttgctgcagcaagagttgaccagatcactgctgaattgaaatcagcagacggcggcaaggcattcgaccctgttgagcacatgaaagctggctttattcatttcaagactgagaaatatgacacaaacccagccttatatggtgagctagcaaagggccagagccctaagttcatggttttcgcgtgctctgactcacgagtctgcccatcccatgtcctcaacttccaacctggtgaggcattcatggttcgtaacatcgccaacatggtccctgcttatgacaaggtcaggtactctggagtaggagcagccattgaatacgccgttcttcatcttaaggtggagaacatcgttgtcattggccacagtgcttgtggaggtatcaaaggtctcatgtcactacctgaagatggtagtgaatcaactgcctttattgaggattgggtaaaaatttgtttacctgccaaggcaaaggttctggccgatcacggagggaaagaatttgcacatcaatgcacagcttgtgagaaggaagctgtgaacgtttcacttggaaatctgcttacgtatccattcgtgagagaaggattggtgaagaaaacattggcattgaagggaggttactatgatttcgtgaagggtggatttgagctgtggggacttgagttcggtctttctcctcctctttccgtatgaacttaattcaattaccatttggccctcacaatttccttccttttttttttttt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0236E02-u8qcS/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0236E02.1" temp_strand="+" temp_description="C02HBa0236E02.1  AC215430.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0236E02 sequenced_by:kribb upload_account_name:korea">
        <position start="16097" stop="18311"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="16395" g_stop="16441" g_length="47"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="47" r_length="47" r_score="0.979"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="16442" i_stop="16813" i_length="372">
            <donor d_prob="0.999" d_score="0.98"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="16814" g_stop="16957" g_length="144"/>
          <reference_exon_boundary r_type="cDNA" r_start="48" r_stop="191" r_length="144" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="16958" i_stop="17055" i_length="98">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="17056" g_stop="17104" g_length="49"/>
          <reference_exon_boundary r_type="cDNA" r_start="192" r_stop="240" r_length="49" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="17105" i_stop="17188" i_length="84">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.961" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="17189" g_stop="17305" g_length="117"/>
          <reference_exon_boundary r_type="cDNA" r_start="241" r_stop="357" r_length="117" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="17306" i_stop="17390" i_length="85">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.979" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="17391" g_stop="17530" g_length="140"/>
          <reference_exon_boundary r_type="cDNA" r_start="358" r_stop="497" r_length="140" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="17531" i_stop="17607" i_length="77">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.948" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="17608" g_stop="17713" g_length="106"/>
          <reference_exon_boundary r_type="cDNA" r_start="498" r_stop="603" r_length="106" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="17714" i_stop="17793" i_length="80">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="17794" g_stop="18011" g_length="218"/>
          <reference_exon_boundary r_type="cDNA" r_start="604" r_stop="821" r_length="218" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0236E02.1" gen_strand="+" ref_id="SGN-E728631" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>821</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0236E02.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E728631" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="16395" e_stop="16441"/>
          <exon e_start="16814" e_stop="16957"/>
          <exon e_start="17056" e_stop="17104"/>
          <exon e_start="17189" e_stop="17305"/>
          <exon e_start="17391" e_stop="17530"/>
          <exon e_start="17608" e_stop="17713"/>
          <exon e_start="17794" e_stop="18011"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAGAATCCTACGATCAAGCCATTGCTGCACTCGAGAAACTCCTCAGGTTTGTACTCTCTCTACGACTCTACCTTCTAAATCACACTACTTTTTTCTCGATCAAGTGGGGCCCAAAAAATATACATACACCCACACATACGTAGACAAAAAAAATGTTAAAATTTGCGAATATGCAGAGAAAACATAATATAATCATGCAATGTTTACTCGTAAAATTCAATTTCCCGGCAATGAACATGTTACTTGGTTTCGAGTTCTCCAGATCTGCATTAATTTTACCATTCTATCATCATTTTTTTACCCCATATCTGCATTAATTTATCATGGTAATGGTGCTCAAACCACAAATCTTTTTTTTTTCTACCTGAAATATTGCTTCAATAATAATAATGGTCTAAATTATTTTCTGCAATTACAGCGAGAAAGCAGAACTTGGACCAGTTGCTGCAGCAAGAGTTGACCAGATCACTGCTGAATTGAAATCAGCAGACGGCGGCAAGGCATTCGACCCTGTTGAGCACATGAAAGCTGGCTTTATTCATTTCAAGACTGAGAAATATGAGTAAGCAAATTCATTCAAATTAAAATTTCTGCATATTTGATGTTGTAACATTATTAGTGTCTGATAATTTTTCCTGTTTTCTATTTATGTACCAACAGCACAAACCCAGCCTTATATGGTGAGCTAGCAAAGGGCCAGAGCCCTAAGGTACAAATTCCTTGTTAATTTGTTGTCTAATTTTATGATTTGTACGGTTTCTGATGAGTTCTATTGTCCTAAATGTGTAAACAGTTCATGGTTTTCGCGTGCTCTGACTCACGAGTCTGCCCATCCCATGTCCTCAACTTCCAACCTGGTGAGGCATTCATGGTTCGTAACATCGCCAACATGGTCCCTGCTTATGACAAGGTCAGTTACAAATCGATCAACTAGTCGATTATTTCGCTCTGGAATTGTGTTTTTTAAAAATAAAGATGGAATTGAATTTTTACAGGTCAGGTACTCTGGAGTAGGAGCAGCCATTGAATACGCCGTTCTTCATCTTAAGGTGGAGAACATCGTTGTCATTGGCCACAGTGCTTGTGGAGGTATCAAAGGTCTCATGTCACTACCTGAAGATGGTAGTGAATCAACGTACGTCACTCTATAAATCTATTCATTCAAAACACTTATCCTTAACAGATGATTGATTAATAATCTAATATACGCAGTGCCTTTATTGAGGATTGGGTAAAAATTTGTTTACCTGCCAAGGCAAAGGTTCTGGCCGATCACGGAGGGAAAGAATTTGCACATCAATGCACAGCTTGTGAGAAGGTAAAATTCAAATTTAACTTTTTGATTATCAATTAATTACATATATAGCAGTATTTTATAATTGATGAAAAATGTTGCAGGAAGCTGTGAACGTTTCACTTGGAAATCTGCTTACGTATCCATTCGTGAGAGAAGGATTGGTGAAGAAAACATTGGCATTGAAGGGAGGTTACTATGATTTCGTGAAGGGTGGATTTGAGCTGTGGGGACTTGAGTTCGGTCTTTCTCCTCCTCTTTCCGTATGAACTTAATTCAATTACCATTTGGCCCTCACAATTTCCTTCCTTTTTTTTTTTTT</genome_strand>
        <mrna_strand>ACAGAATCCTACGATCAAGCCATTGCTGCACTCGAGAAACTCCTCAG....................................................................................................................................................................................................................................................................................................................................................................................CGAGAAAGCAGAACTTGGACCAGTTGCTGCAGCAAGAGTTGACCAGATCACTGCTGAATTGAAATCAGCAGACGGCGGCAAGGCATTCGACCCTGTTGAGCACATGAAAGCTGGCTTTATTCATTTCAAGACTGAGAAATATGA..................................................................................................CACAAACCCAGCCTTATATGGTGAGCTAGCAAAGGGCCAGAGCCCTAAG....................................................................................TTCATGGTTTTCGCGTGCTCTGACTCACGAGTCTGCCCATCCCATGTCCTCAACTTCCAACCTGGTGAGGCATTCATGGTTCGTAACATCGCCAACATGGTCCCTGCTTATGACAAG.....................................................................................GTCAGGTACTCTGGAGTAGGAGCAGCCATTGAATACGCCGTTCTTCATCTTAAGGTGGAGAACATCGTTGTCATTGGCCACAGTGCTTGTGGAGGTATCAAAGGTCTCATGTCACTACCTGAAGATGGTAGTGAATCAAC.............................................................................TGCCTTTATTGAGGATTGGGTAAAAATTTGTTTACCTGCCAAGGCAAAGGTTCTGGCCGATCACGGAGGGAAAGAATTTGCACATCAATGCACAGCTTGTGAGAAG................................................................................GAAGCTGTGAACGTTTCACTTGGAAATCTGCTTACGTATCCATTCGTGAGAGAAGGATTGGTGAAGAAAACATTGGCATTGAAGGGAGGTTACTATGATTTCGTGAAGGGTGGATTTGAGCTGTGGGGACTTGAGTTCGGTCTTTCTCCTCCTCTTTCCGTATGAACTTAATTCAATTACCATTTGGCCCTCACAATTTCCTTCCTTTTTTTTTTTTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0236E02-u8qcS/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E738380" ref_strand="+" ref_description="SGN-E738380 [LC13BG01]">
      <seq>catgaatcctacgatcaagccattgctgcactcgagaaactcctcagcgagaaagcagaacttggaccagttgctgcagcaagagttgaccagatcactgctgaattgaaatcagcagacggcggcaaggcattcgaccctgttgagcacatgaaagctggctttattcatttcaagactgagaaatatgacacaaacccagccttatatggtgagctagcaaagggccagagccctaagttcatggttttcgcgtgctctgactcacgagtctgcccatcccatgtcctcaacttccaacctggtgaggcattcatggttcgtaacatcgccaacatggtccctgcttatgacaaggtcaggtactctggagtaggagcagccattgaatacgccgttcttcatcttaaggtggagaacatcgttgtcattggccacagtgcttgtggaggtatcaaaggtctcatgtcactacctgaagatggtagtgaatcaactgcctttattgaggattgggtaaaaatttgtttacctgccaaggcaaaggttctggccgatcacggagggaaagaatttgcacatcaatgcacagcttgtgagaaggaagctgtgaacgtttcacttggaaatctgcttacgtatccattcgtgagagaaggattggtgaagaaaacattggcattgaagggaggttactatgatttcgtgaagggtggatttgagctgtggggacttgagttcggtctttctcctcctctttccgtatgaacttaattcaattaccatttggccctcacaatttccttccttttttttttttt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0236E02-u8qcS/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0236E02.1" temp_strand="+" temp_description="C02HBa0236E02.1  AC215430.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0236E02 sequenced_by:kribb upload_account_name:korea">
        <position start="16096" stop="18311"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="16395" g_stop="16441" g_length="47"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="47" r_length="47" r_score="0.957"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="16442" i_stop="16813" i_length="372">
            <donor d_prob="0.999" d_score="0.96"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="16814" g_stop="16957" g_length="144"/>
          <reference_exon_boundary r_type="cDNA" r_start="48" r_stop="191" r_length="144" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="16958" i_stop="17055" i_length="98">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="17056" g_stop="17104" g_length="49"/>
          <reference_exon_boundary r_type="cDNA" r_start="192" r_stop="240" r_length="49" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="17105" i_stop="17188" i_length="84">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.961" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="17189" g_stop="17305" g_length="117"/>
          <reference_exon_boundary r_type="cDNA" r_start="241" r_stop="357" r_length="117" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="17306" i_stop="17390" i_length="85">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.979" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="17391" g_stop="17530" g_length="140"/>
          <reference_exon_boundary r_type="cDNA" r_start="358" r_stop="497" r_length="140" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="17531" i_stop="17607" i_length="77">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.948" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="17608" g_stop="17713" g_length="106"/>
          <reference_exon_boundary r_type="cDNA" r_start="498" r_stop="603" r_length="106" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="17714" i_stop="17793" i_length="80">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="17794" g_stop="18011" g_length="218"/>
          <reference_exon_boundary r_type="cDNA" r_start="604" r_stop="821" r_length="218" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0236E02.1" gen_strand="+" ref_id="SGN-E738380" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>821</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0236E02.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E738380" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="16395" e_stop="16441"/>
          <exon e_start="16814" e_stop="16957"/>
          <exon e_start="17056" e_stop="17104"/>
          <exon e_start="17189" e_stop="17305"/>
          <exon e_start="17391" e_stop="17530"/>
          <exon e_start="17608" e_stop="17713"/>
          <exon e_start="17794" e_stop="18011"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAGAATCCTACGATCAAGCCATTGCTGCACTCGAGAAACTCCTCAGGTTTGTACTCTCTCTACGACTCTACCTTCTAAATCACACTACTTTTTTCTCGATCAAGTGGGGCCCAAAAAATATACATACACCCACACATACGTAGACAAAAAAAATGTTAAAATTTGCGAATATGCAGAGAAAACATAATATAATCATGCAATGTTTACTCGTAAAATTCAATTTCCCGGCAATGAACATGTTACTTGGTTTCGAGTTCTCCAGATCTGCATTAATTTTACCATTCTATCATCATTTTTTTACCCCATATCTGCATTAATTTATCATGGTAATGGTGCTCAAACCACAAATCTTTTTTTTTTCTACCTGAAATATTGCTTCAATAATAATAATGGTCTAAATTATTTTCTGCAATTACAGCGAGAAAGCAGAACTTGGACCAGTTGCTGCAGCAAGAGTTGACCAGATCACTGCTGAATTGAAATCAGCAGACGGCGGCAAGGCATTCGACCCTGTTGAGCACATGAAAGCTGGCTTTATTCATTTCAAGACTGAGAAATATGAGTAAGCAAATTCATTCAAATTAAAATTTCTGCATATTTGATGTTGTAACATTATTAGTGTCTGATAATTTTTCCTGTTTTCTATTTATGTACCAACAGCACAAACCCAGCCTTATATGGTGAGCTAGCAAAGGGCCAGAGCCCTAAGGTACAAATTCCTTGTTAATTTGTTGTCTAATTTTATGATTTGTACGGTTTCTGATGAGTTCTATTGTCCTAAATGTGTAAACAGTTCATGGTTTTCGCGTGCTCTGACTCACGAGTCTGCCCATCCCATGTCCTCAACTTCCAACCTGGTGAGGCATTCATGGTTCGTAACATCGCCAACATGGTCCCTGCTTATGACAAGGTCAGTTACAAATCGATCAACTAGTCGATTATTTCGCTCTGGAATTGTGTTTTTTAAAAATAAAGATGGAATTGAATTTTTACAGGTCAGGTACTCTGGAGTAGGAGCAGCCATTGAATACGCCGTTCTTCATCTTAAGGTGGAGAACATCGTTGTCATTGGCCACAGTGCTTGTGGAGGTATCAAAGGTCTCATGTCACTACCTGAAGATGGTAGTGAATCAACGTACGTCACTCTATAAATCTATTCATTCAAAACACTTATCCTTAACAGATGATTGATTAATAATCTAATATACGCAGTGCCTTTATTGAGGATTGGGTAAAAATTTGTTTACCTGCCAAGGCAAAGGTTCTGGCCGATCACGGAGGGAAAGAATTTGCACATCAATGCACAGCTTGTGAGAAGGTAAAATTCAAATTTAACTTTTTGATTATCAATTAATTACATATATAGCAGTATTTTATAATTGATGAAAAATGTTGCAGGAAGCTGTGAACGTTTCACTTGGAAATCTGCTTACGTATCCATTCGTGAGAGAAGGATTGGTGAAGAAAACATTGGCATTGAAGGGAGGTTACTATGATTTCGTGAAGGGTGGATTTGAGCTGTGGGGACTTGAGTTCGGTCTTTCTCCTCCTCTTTCCGTATGAACTTAATTCAATTACCATTTGGCCCTCACAATTTCCTTCCTTTTTTTTTTTTT</genome_strand>
        <mrna_strand>CATGAATCCTACGATCAAGCCATTGCTGCACTCGAGAAACTCCTCAG....................................................................................................................................................................................................................................................................................................................................................................................CGAGAAAGCAGAACTTGGACCAGTTGCTGCAGCAAGAGTTGACCAGATCACTGCTGAATTGAAATCAGCAGACGGCGGCAAGGCATTCGACCCTGTTGAGCACATGAAAGCTGGCTTTATTCATTTCAAGACTGAGAAATATGA..................................................................................................CACAAACCCAGCCTTATATGGTGAGCTAGCAAAGGGCCAGAGCCCTAAG....................................................................................TTCATGGTTTTCGCGTGCTCTGACTCACGAGTCTGCCCATCCCATGTCCTCAACTTCCAACCTGGTGAGGCATTCATGGTTCGTAACATCGCCAACATGGTCCCTGCTTATGACAAG.....................................................................................GTCAGGTACTCTGGAGTAGGAGCAGCCATTGAATACGCCGTTCTTCATCTTAAGGTGGAGAACATCGTTGTCATTGGCCACAGTGCTTGTGGAGGTATCAAAGGTCTCATGTCACTACCTGAAGATGGTAGTGAATCAAC.............................................................................TGCCTTTATTGAGGATTGGGTAAAAATTTGTTTACCTGCCAAGGCAAAGGTTCTGGCCGATCACGGAGGGAAAGAATTTGCACATCAATGCACAGCTTGTGAGAAG................................................................................GAAGCTGTGAACGTTTCACTTGGAAATCTGCTTACGTATCCATTCGTGAGAGAAGGATTGGTGAAGAAAACATTGGCATTGAAGGGAGGTTACTATGATTTCGTGAAGGGTGGATTTGAGCTGTGGGGACTTGAGTTCGGTCTTTCTCCTCCTCTTTCCGTATGAACTTAATTCAATTACCATTTGGCCCTCACAATTTCCTTCCTTTTTTTTTTTTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0236E02-u8qcS/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E278996" ref_strand="+" ref_description="SGN-E278996 [cLER-2-D20]">
      <seq>agaatcctacgatcaagccattgctgcactcgagaaactcctcagcgagaaagcagaacttggaccagttgctgcagcaagagttgaccagatcactgctgaattgaaatcagcagacggcggcaaggcattcgaccctgttgagcacatgaaagctggctttattcatttcaagactgagaaatatgacacaaacccagccttatatggtgagctagcaaagggccagagccctaagttcatggttttcgcgtgctctgactcacgagtctgcccatcccatgtcctcaacttccaacctggtgaggcattcatggttcgtaacatcgccaacatggtccctgcttatgacaaggtcaggtactctggagtaggagcagccattgaatacgccgttcttcatcttaaggtggagaacatcgttgtcattggccacagtgcttgtggaggt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0236E02-u8qcS/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0236E02.1" temp_strand="+" temp_description="C02HBa0236E02.1  AC215430.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0236E02 sequenced_by:kribb upload_account_name:korea">
        <position start="16097" stop="17786"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="16397" g_stop="16441" g_length="45"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="45" r_length="45" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="16442" i_stop="16813" i_length="372">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="16814" g_stop="16957" g_length="144"/>
          <reference_exon_boundary r_type="cDNA" r_start="46" r_stop="189" r_length="144" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="16958" i_stop="17055" i_length="98">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="17056" g_stop="17104" g_length="49"/>
          <reference_exon_boundary r_type="cDNA" r_start="190" r_stop="238" r_length="49" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="17105" i_stop="17188" i_length="84">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.961" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="17189" g_stop="17305" g_length="117"/>
          <reference_exon_boundary r_type="cDNA" r_start="239" r_stop="355" r_length="117" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="17306" i_stop="17390" i_length="85">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.979" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="17391" g_stop="17486" g_length="96"/>
          <reference_exon_boundary r_type="cDNA" r_start="356" r_stop="451" r_length="96" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0236E02.1" gen_strand="+" ref_id="SGN-E278996" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>451</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0236E02.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E278996" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="16397" e_stop="16441"/>
          <exon e_start="16814" e_stop="16957"/>
          <exon e_start="17056" e_stop="17104"/>
          <exon e_start="17189" e_stop="17305"/>
          <exon e_start="17391" e_stop="17486"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGAATCCTACGATCAAGCCATTGCTGCACTCGAGAAACTCCTCAGGTTTGTACTCTCTCTACGACTCTACCTTCTAAATCACACTACTTTTTTCTCGATCAAGTGGGGCCCAAAAAATATACATACACCCACACATACGTAGACAAAAAAAATGTTAAAATTTGCGAATATGCAGAGAAAACATAATATAATCATGCAATGTTTACTCGTAAAATTCAATTTCCCGGCAATGAACATGTTACTTGGTTTCGAGTTCTCCAGATCTGCATTAATTTTACCATTCTATCATCATTTTTTTACCCCATATCTGCATTAATTTATCATGGTAATGGTGCTCAAACCACAAATCTTTTTTTTTTCTACCTGAAATATTGCTTCAATAATAATAATGGTCTAAATTATTTTCTGCAATTACAGCGAGAAAGCAGAACTTGGACCAGTTGCTGCAGCAAGAGTTGACCAGATCACTGCTGAATTGAAATCAGCAGACGGCGGCAAGGCATTCGACCCTGTTGAGCACATGAAAGCTGGCTTTATTCATTTCAAGACTGAGAAATATGAGTAAGCAAATTCATTCAAATTAAAATTTCTGCATATTTGATGTTGTAACATTATTAGTGTCTGATAATTTTTCCTGTTTTCTATTTATGTACCAACAGCACAAACCCAGCCTTATATGGTGAGCTAGCAAAGGGCCAGAGCCCTAAGGTACAAATTCCTTGTTAATTTGTTGTCTAATTTTATGATTTGTACGGTTTCTGATGAGTTCTATTGTCCTAAATGTGTAAACAGTTCATGGTTTTCGCGTGCTCTGACTCACGAGTCTGCCCATCCCATGTCCTCAACTTCCAACCTGGTGAGGCATTCATGGTTCGTAACATCGCCAACATGGTCCCTGCTTATGACAAGGTCAGTTACAAATCGATCAACTAGTCGATTATTTCGCTCTGGAATTGTGTTTTTTAAAAATAAAGATGGAATTGAATTTTTACAGGTCAGGTACTCTGGAGTAGGAGCAGCCATTGAATACGCCGTTCTTCATCTTAAGGTGGAGAACATCGTTGTCATTGGCCACAGTGCTTGTGGAGGT</genome_strand>
        <mrna_strand>AGAATCCTACGATCAAGCCATTGCTGCACTCGAGAAACTCCTCAG....................................................................................................................................................................................................................................................................................................................................................................................CGAGAAAGCAGAACTTGGACCAGTTGCTGCAGCAAGAGTTGACCAGATCACTGCTGAATTGAAATCAGCAGACGGCGGCAAGGCATTCGACCCTGTTGAGCACATGAAAGCTGGCTTTATTCATTTCAAGACTGAGAAATATGA..................................................................................................CACAAACCCAGCCTTATATGGTGAGCTAGCAAAGGGCCAGAGCCCTAAG....................................................................................TTCATGGTTTTCGCGTGCTCTGACTCACGAGTCTGCCCATCCCATGTCCTCAACTTCCAACCTGGTGAGGCATTCATGGTTCGTAACATCGCCAACATGGTCCCTGCTTATGACAAG.....................................................................................GTCAGGTACTCTGGAGTAGGAGCAGCCATTGAATACGCCGTTCTTCATCTTAAGGTGGAGAACATCGTTGTCATTGGCCACAGTGCTTGTGGAGGT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0236E02-u8qcS/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E278639" ref_strand="-" ref_description="SGN-E278639 [cLER-10-P6]">
      <seq>aaactcctcagcgagaaagcagaacttggaccagttgctgcagcaagagttgaccagatcactgctgaattgaaatcagcagacggcggcaaggcattcgaccctgttgagcacatgaaagctggctttattcatttcaagactgagaaatatgacacaaacccagccttatatggtgagctagcaaagggccagagccctaagttcatggttttc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0236E02-u8qcS/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0236E02.1" temp_strand="+" temp_description="C02HBa0236E02.1  AC215430.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0236E02 sequenced_by:kribb upload_account_name:korea">
        <position start="16511" stop="17409"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="16814" g_stop="16957" g_length="144"/>
          <reference_exon_boundary r_type="cDNA" r_start="12" r_stop="155" r_length="144" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="16958" i_stop="17055" i_length="98">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="17056" g_stop="17104" g_length="49"/>
          <reference_exon_boundary r_type="cDNA" r_start="156" r_stop="204" r_length="49" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="17105" i_stop="17188" i_length="84">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.961" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="17189" g_stop="17200" g_length="12"/>
          <reference_exon_boundary r_type="cDNA" r_start="205" r_stop="216" r_length="12" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0236E02.1" gen_strand="+" ref_id="SGN-E278639" ref_strand="-">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>205</cumulative_length_of_scored_exons>
        <coverage percentage="0.949" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0236E02.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E278639" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="16814" e_stop="16957"/>
          <exon e_start="17056" e_stop="17104"/>
          <exon e_start="17189" e_stop="17200"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CGAGAAAGCAGAACTTGGACCAGTTGCTGCAGCAAGAGTTGACCAGATCACTGCTGAATTGAAATCAGCAGACGGCGGCAAGGCATTCGACCCTGTTGAGCACATGAAAGCTGGCTTTATTCATTTCAAGACTGAGAAATATGAGTAAGCAAATTCATTCAAATTAAAATTTCTGCATATTTGATGTTGTAACATTATTAGTGTCTGATAATTTTTCCTGTTTTCTATTTATGTACCAACAGCACAAACCCAGCCTTATATGGTGAGCTAGCAAAGGGCCAGAGCCCTAAGGTACAAATTCCTTGTTAATTTGTTGTCTAATTTTATGATTTGTACGGTTTCTGATGAGTTCTATTGTCCTAAATGTGTAAACAGTTCATGGTTTTC</genome_strand>
        <mrna_strand>CGAGAAAGCAGAACTTGGACCAGTTGCTGCAGCAAGAGTTGACCAGATCACTGCTGAATTGAAATCAGCAGACGGCGGCAAGGCATTCGACCCTGTTGAGCACATGAAAGCTGGCTTTATTCATTTCAAGACTGAGAAATATGA..................................................................................................CACAAACCCAGCCTTATATGGTGAGCTAGCAAAGGGCCAGAGCCCTAAG....................................................................................TTCATGGTTTTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0236E02-u8qcS/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E298503" ref_strand="+" ref_description="SGN-E298503 [cLET-41-I4]">
      <seq>aagagttgaccagatcactgctgaattgaaatcagcagacggcggcaaggcattcgaccctgttgagcacatgaaagctggctttattcatttcaagactgagaaatatgacacaaacccagccttatatggtgagctagcaaagggccagagccctaagttcatggttttcgcgtgctctgactcacga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0236E02-u8qcS/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0236E02.1" temp_strand="+" temp_description="C02HBa0236E02.1  AC215430.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0236E02 sequenced_by:kribb upload_account_name:korea">
        <position start="16547" stop="17518"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="16847" g_stop="16957" g_length="111"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="111" r_length="111" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="16958" i_stop="17055" i_length="98">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="17056" g_stop="17104" g_length="49"/>
          <reference_exon_boundary r_type="cDNA" r_start="112" r_stop="160" r_length="49" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="17105" i_stop="17188" i_length="84">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.961" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="17189" g_stop="17218" g_length="30"/>
          <reference_exon_boundary r_type="cDNA" r_start="161" r_stop="190" r_length="30" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0236E02.1" gen_strand="+" ref_id="SGN-E298503" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>190</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0236E02.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E298503" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="16847" e_stop="16957"/>
          <exon e_start="17056" e_stop="17104"/>
          <exon e_start="17189" e_stop="17218"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAGAGTTGACCAGATCACTGCTGAATTGAAATCAGCAGACGGCGGCAAGGCATTCGACCCTGTTGAGCACATGAAAGCTGGCTTTATTCATTTCAAGACTGAGAAATATGAGTAAGCAAATTCATTCAAATTAAAATTTCTGCATATTTGATGTTGTAACATTATTAGTGTCTGATAATTTTTCCTGTTTTCTATTTATGTACCAACAGCACAAACCCAGCCTTATATGGTGAGCTAGCAAAGGGCCAGAGCCCTAAGGTACAAATTCCTTGTTAATTTGTTGTCTAATTTTATGATTTGTACGGTTTCTGATGAGTTCTATTGTCCTAAATGTGTAAACAGTTCATGGTTTTCGCGTGCTCTGACTCACGA</genome_strand>
        <mrna_strand>AAGAGTTGACCAGATCACTGCTGAATTGAAATCAGCAGACGGCGGCAAGGCATTCGACCCTGTTGAGCACATGAAAGCTGGCTTTATTCATTTCAAGACTGAGAAATATGA..................................................................................................CACAAACCCAGCCTTATATGGTGAGCTAGCAAAGGGCCAGAGCCCTAAG....................................................................................TTCATGGTTTTCGCGTGCTCTGACTCACGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0236E02-u8qcS/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E737813" ref_strand="+" ref_description="SGN-E737813 [LC11BC09]">
      <seq>cagatcactgctgaattgaaatcagcagacggcggcaaggcattcgaccctgttgagcacatgaaagctggctttattcatttcaagactgagaaatatgacacaaacccagccttatatggtgagctagcaaagggccagagccctaagttcatggttttcgcgtgctctgactcacgagtctgcccatcccatgtcctcaacttccaacctggtgaggcattcatggttcgtaacatcgccaacatggtccctgcttatgacaaggtcaggtactctggagtaggagcagccattgaatacgccgttcttcatcttaaggtggagaacatcgttgtcattggccacagtgcttgtggaggtatcaaaggtctcatgtcactacctgaagatggtagtgaatcaactgcctttattgaggattgggtaaaaatttgtttacctgccaaggcaaaggttctggccgatcacggagggaaagaatttgcacatcaatgcacagcttgtgagaaggaagctgtgaacgtttcacttggaaatctgcttacgtatccattcgtgagagaaggattggtgaagaaaacattggcattgaagggaggttactatgatttcgtgaagggtggatttgagctgtggggacttgagttcggtctttctcctcctctttccgtatgaacttaattcaattaccatttggccctcacaatttccttcctttttttttttt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0236E02-u8qcS/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0236E02.1" temp_strand="+" temp_description="C02HBa0236E02.1  AC215430.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0236E02 sequenced_by:kribb upload_account_name:korea">
        <position start="16557" stop="18310"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="16857" g_stop="16957" g_length="101"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="101" r_length="101" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="16958" i_stop="17055" i_length="98">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="17056" g_stop="17104" g_length="49"/>
          <reference_exon_boundary r_type="cDNA" r_start="102" r_stop="150" r_length="49" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="17105" i_stop="17188" i_length="84">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.961" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="17189" g_stop="17305" g_length="117"/>
          <reference_exon_boundary r_type="cDNA" r_start="151" r_stop="267" r_length="117" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="17306" i_stop="17390" i_length="85">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.979" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="17391" g_stop="17530" g_length="140"/>
          <reference_exon_boundary r_type="cDNA" r_start="268" r_stop="407" r_length="140" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="17531" i_stop="17607" i_length="77">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.948" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="17608" g_stop="17713" g_length="106"/>
          <reference_exon_boundary r_type="cDNA" r_start="408" r_stop="513" r_length="106" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="17714" i_stop="17793" i_length="80">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="17794" g_stop="18010" g_length="217"/>
          <reference_exon_boundary r_type="cDNA" r_start="514" r_stop="730" r_length="217" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0236E02.1" gen_strand="+" ref_id="SGN-E737813" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>730</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0236E02.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E737813" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="16857" e_stop="16957"/>
          <exon e_start="17056" e_stop="17104"/>
          <exon e_start="17189" e_stop="17305"/>
          <exon e_start="17391" e_stop="17530"/>
          <exon e_start="17608" e_stop="17713"/>
          <exon e_start="17794" e_stop="18010"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAGATCACTGCTGAATTGAAATCAGCAGACGGCGGCAAGGCATTCGACCCTGTTGAGCACATGAAAGCTGGCTTTATTCATTTCAAGACTGAGAAATATGAGTAAGCAAATTCATTCAAATTAAAATTTCTGCATATTTGATGTTGTAACATTATTAGTGTCTGATAATTTTTCCTGTTTTCTATTTATGTACCAACAGCACAAACCCAGCCTTATATGGTGAGCTAGCAAAGGGCCAGAGCCCTAAGGTACAAATTCCTTGTTAATTTGTTGTCTAATTTTATGATTTGTACGGTTTCTGATGAGTTCTATTGTCCTAAATGTGTAAACAGTTCATGGTTTTCGCGTGCTCTGACTCACGAGTCTGCCCATCCCATGTCCTCAACTTCCAACCTGGTGAGGCATTCATGGTTCGTAACATCGCCAACATGGTCCCTGCTTATGACAAGGTCAGTTACAAATCGATCAACTAGTCGATTATTTCGCTCTGGAATTGTGTTTTTTAAAAATAAAGATGGAATTGAATTTTTACAGGTCAGGTACTCTGGAGTAGGAGCAGCCATTGAATACGCCGTTCTTCATCTTAAGGTGGAGAACATCGTTGTCATTGGCCACAGTGCTTGTGGAGGTATCAAAGGTCTCATGTCACTACCTGAAGATGGTAGTGAATCAACGTACGTCACTCTATAAATCTATTCATTCAAAACACTTATCCTTAACAGATGATTGATTAATAATCTAATATACGCAGTGCCTTTATTGAGGATTGGGTAAAAATTTGTTTACCTGCCAAGGCAAAGGTTCTGGCCGATCACGGAGGGAAAGAATTTGCACATCAATGCACAGCTTGTGAGAAGGTAAAATTCAAATTTAACTTTTTGATTATCAATTAATTACATATATAGCAGTATTTTATAATTGATGAAAAATGTTGCAGGAAGCTGTGAACGTTTCACTTGGAAATCTGCTTACGTATCCATTCGTGAGAGAAGGATTGGTGAAGAAAACATTGGCATTGAAGGGAGGTTACTATGATTTCGTGAAGGGTGGATTTGAGCTGTGGGGACTTGAGTTCGGTCTTTCTCCTCCTCTTTCCGTATGAACTTAATTCAATTACCATTTGGCCCTCACAATTTCCTTCCTTTTTTTTTTTT</genome_strand>
        <mrna_strand>CAGATCACTGCTGAATTGAAATCAGCAGACGGCGGCAAGGCATTCGACCCTGTTGAGCACATGAAAGCTGGCTTTATTCATTTCAAGACTGAGAAATATGA..................................................................................................CACAAACCCAGCCTTATATGGTGAGCTAGCAAAGGGCCAGAGCCCTAAG....................................................................................TTCATGGTTTTCGCGTGCTCTGACTCACGAGTCTGCCCATCCCATGTCCTCAACTTCCAACCTGGTGAGGCATTCATGGTTCGTAACATCGCCAACATGGTCCCTGCTTATGACAAG.....................................................................................GTCAGGTACTCTGGAGTAGGAGCAGCCATTGAATACGCCGTTCTTCATCTTAAGGTGGAGAACATCGTTGTCATTGGCCACAGTGCTTGTGGAGGTATCAAAGGTCTCATGTCACTACCTGAAGATGGTAGTGAATCAAC.............................................................................TGCCTTTATTGAGGATTGGGTAAAAATTTGTTTACCTGCCAAGGCAAAGGTTCTGGCCGATCACGGAGGGAAAGAATTTGCACATCAATGCACAGCTTGTGAGAAG................................................................................GAAGCTGTGAACGTTTCACTTGGAAATCTGCTTACGTATCCATTCGTGAGAGAAGGATTGGTGAAGAAAACATTGGCATTGAAGGGAGGTTACTATGATTTCGTGAAGGGTGGATTTGAGCTGTGGGGACTTGAGTTCGGTCTTTCTCCTCCTCTTTCCGTATGAACTTAATTCAATTACCATTTGGCCCTCACAATTTCCTTCCTTTTTTTTTTTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0236E02-u8qcS/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E475944" ref_strand="+" ref_description="SGN-E475944 [cSTB-42-F20]">
      <seq>caaggccttcgaccctgttgagcacatgaaaactggctttattcatttcaagactgagaaatatgatacaaacccagccttatatggtgaactagcaaagggccagagccctaagttcatggttttcgcgtgctctgactcgcgagtgtgcccatcccatatcctcaacttccaacctggtgaggcattcatggttcgtaacattgccaacatggtccctgcttatgacaaggtgagatactctggagtgggagcagccattgagtacgctgttcttcatcttaaggtggagaacattgttgtcattggccacagtgcttgtggaggtatcaaaggtctcatgtctctacctgaagatggtagtgaatcaactgcctttattgaagattgggtgaaaatttgtttacctgccaaggccaaagttctagccgatcacggagataaagaatttggacatcaatgca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0236E02-u8qcS/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0236E02.1" temp_strand="+" temp_description="C02HBa0236E02.1  AC215430.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0236E02 sequenced_by:kribb upload_account_name:korea">
        <position start="16592" stop="17999"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="16892" g_stop="16957" g_length="66"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="66" r_length="66" r_score="0.970"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="16958" i_stop="17055" i_length="98">
            <donor d_prob="0.999" d_score="0.98"/>
            <acceptor a_prob="0.999" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="17056" g_stop="17104" g_length="49"/>
          <reference_exon_boundary r_type="cDNA" r_start="67" r_stop="115" r_length="49" r_score="0.959"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="17105" i_stop="17188" i_length="84">
            <donor d_prob="1.000" d_score="0.96"/>
            <acceptor a_prob="0.961" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="17189" g_stop="17305" g_length="117"/>
          <reference_exon_boundary r_type="cDNA" r_start="116" r_stop="232" r_length="117" r_score="0.966"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="17306" i_stop="17390" i_length="85">
            <donor d_prob="0.999" d_score="0.98"/>
            <acceptor a_prob="0.979" a_score="0.90"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="17391" g_stop="17530" g_length="140"/>
          <reference_exon_boundary r_type="cDNA" r_start="233" r_stop="372" r_length="140" r_score="0.950"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="17531" i_stop="17607" i_length="77">
            <donor d_prob="0.999" d_score="0.98"/>
            <acceptor a_prob="0.948" a_score="0.92"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="17608" g_stop="17699" g_length="92"/>
          <reference_exon_boundary r_type="cDNA" r_start="373" r_stop="464" r_length="92" r_score="0.913"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0236E02.1" gen_strand="+" ref_id="SGN-E475944" ref_strand="+">
        <total_alignment_score>0.949</total_alignment_score>
        <cumulative_length_of_scored_exons>464</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0236E02.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E475944" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="16892" e_stop="16957"/>
          <exon e_start="17056" e_stop="17104"/>
          <exon e_start="17189" e_stop="17305"/>
          <exon e_start="17391" e_stop="17530"/>
          <exon e_start="17608" e_stop="17699"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAAGGCATTCGACCCTGTTGAGCACATGAAAGCTGGCTTTATTCATTTCAAGACTGAGAAATATGAGTAAGCAAATTCATTCAAATTAAAATTTCTGCATATTTGATGTTGTAACATTATTAGTGTCTGATAATTTTTCCTGTTTTCTATTTATGTACCAACAGCACAAACCCAGCCTTATATGGTGAGCTAGCAAAGGGCCAGAGCCCTAAGGTACAAATTCCTTGTTAATTTGTTGTCTAATTTTATGATTTGTACGGTTTCTGATGAGTTCTATTGTCCTAAATGTGTAAACAGTTCATGGTTTTCGCGTGCTCTGACTCACGAGTCTGCCCATCCCATGTCCTCAACTTCCAACCTGGTGAGGCATTCATGGTTCGTAACATCGCCAACATGGTCCCTGCTTATGACAAGGTCAGTTACAAATCGATCAACTAGTCGATTATTTCGCTCTGGAATTGTGTTTTTTAAAAATAAAGATGGAATTGAATTTTTACAGGTCAGGTACTCTGGAGTAGGAGCAGCCATTGAATACGCCGTTCTTCATCTTAAGGTGGAGAACATCGTTGTCATTGGCCACAGTGCTTGTGGAGGTATCAAAGGTCTCATGTCACTACCTGAAGATGGTAGTGAATCAACGTACGTCACTCTATAAATCTATTCATTCAAAACACTTATCCTTAACAGATGATTGATTAATAATCTAATATACGCAGTGCCTTTATTGAGGATTGGGTAAAAATTTGTTTACCTGCCAAGGCAAAGGTTCTGGCCGATCACGGAGGGAAAGAATTTGCACATCAATGCA</genome_strand>
        <mrna_strand>CAAGGCCTTCGACCCTGTTGAGCACATGAAAACTGGCTTTATTCATTTCAAGACTGAGAAATATGA..................................................................................................TACAAACCCAGCCTTATATGGTGAACTAGCAAAGGGCCAGAGCCCTAAG....................................................................................TTCATGGTTTTCGCGTGCTCTGACTCGCGAGTGTGCCCATCCCATATCCTCAACTTCCAACCTGGTGAGGCATTCATGGTTCGTAACATTGCCAACATGGTCCCTGCTTATGACAAG.....................................................................................GTGAGATACTCTGGAGTGGGAGCAGCCATTGAGTACGCTGTTCTTCATCTTAAGGTGGAGAACATTGTTGTCATTGGCCACAGTGCTTGTGGAGGTATCAAAGGTCTCATGTCTCTACCTGAAGATGGTAGTGAATCAAC.............................................................................TGCCTTTATTGAAGATTGGGTGAAAATTTGTTTACCTGCCAAGGCCAAAGTTCTAGCCGATCACGGAGATAAAGAATTTGGACATCAATGCA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0236E02-u8qcS/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E295257" ref_strand="+" ref_description="SGN-E295257 [cLET-20-O10]">
      <seq>gcattcgaccctgttgagcacatgaaagctttctttattcatttcaagactgagaaatatgacacaaacccagccttatatggtgagctagcaaagggccagagccctaagttcatggttttcgcgtgctctgactcacgagtctgcccatcccatgtcctcaacttccaacctggtgaggcattcatggttcgtaacatcgccaacatggtccctgcttatgacaaggtcaggtactctggagtaggagcagccattgaatacgccgttcttcatcttaaggtggagaacatcgttgtcattggccacagtgcttgtggaggtatcaaaggtctcatgtcactacctgaagatggtagtgaatcaactgcctttattgaggattgggtaaaaatttgtttaccggccaaggcaaaggttctggccgatcacggagggaaagaatttgcacatcaatgcacagcttgtgagaaggaagctgtgaacgtttcacttggaaatctgcttacgtatccattcgtgagagaaggattggtgaagaaaacattggcattgaagggaggttactatgatt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0236E02-u8qcS/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0236E02.1" temp_strand="+" temp_description="C02HBa0236E02.1  AC215430.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0236E02 sequenced_by:kribb upload_account_name:korea">
        <position start="16596" stop="18193"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="16896" g_stop="16957" g_length="62"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="62" r_length="62" r_score="0.968"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="16958" i_stop="17055" i_length="98">
            <donor d_prob="0.999" d_score="0.96"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="17056" g_stop="17104" g_length="49"/>
          <reference_exon_boundary r_type="cDNA" r_start="63" r_stop="111" r_length="49" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="17105" i_stop="17188" i_length="84">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.961" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="17189" g_stop="17305" g_length="117"/>
          <reference_exon_boundary r_type="cDNA" r_start="112" r_stop="228" r_length="117" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="17306" i_stop="17390" i_length="85">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.979" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="17391" g_stop="17530" g_length="140"/>
          <reference_exon_boundary r_type="cDNA" r_start="229" r_stop="368" r_length="140" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="17531" i_stop="17607" i_length="77">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.948" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="17608" g_stop="17713" g_length="106"/>
          <reference_exon_boundary r_type="cDNA" r_start="369" r_stop="474" r_length="106" r_score="0.991"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="17714" i_stop="17793" i_length="80">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="17794" g_stop="17893" g_length="100"/>
          <reference_exon_boundary r_type="cDNA" r_start="475" r_stop="574" r_length="100" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0236E02.1" gen_strand="+" ref_id="SGN-E295257" ref_strand="+">
        <total_alignment_score>0.994</total_alignment_score>
        <cumulative_length_of_scored_exons>574</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0236E02.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E295257" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="16896" e_stop="16957"/>
          <exon e_start="17056" e_stop="17104"/>
          <exon e_start="17189" e_stop="17305"/>
          <exon e_start="17391" e_stop="17530"/>
          <exon e_start="17608" e_stop="17713"/>
          <exon e_start="17794" e_stop="17893"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCATTCGACCCTGTTGAGCACATGAAAGCTGGCTTTATTCATTTCAAGACTGAGAAATATGAGTAAGCAAATTCATTCAAATTAAAATTTCTGCATATTTGATGTTGTAACATTATTAGTGTCTGATAATTTTTCCTGTTTTCTATTTATGTACCAACAGCACAAACCCAGCCTTATATGGTGAGCTAGCAAAGGGCCAGAGCCCTAAGGTACAAATTCCTTGTTAATTTGTTGTCTAATTTTATGATTTGTACGGTTTCTGATGAGTTCTATTGTCCTAAATGTGTAAACAGTTCATGGTTTTCGCGTGCTCTGACTCACGAGTCTGCCCATCCCATGTCCTCAACTTCCAACCTGGTGAGGCATTCATGGTTCGTAACATCGCCAACATGGTCCCTGCTTATGACAAGGTCAGTTACAAATCGATCAACTAGTCGATTATTTCGCTCTGGAATTGTGTTTTTTAAAAATAAAGATGGAATTGAATTTTTACAGGTCAGGTACTCTGGAGTAGGAGCAGCCATTGAATACGCCGTTCTTCATCTTAAGGTGGAGAACATCGTTGTCATTGGCCACAGTGCTTGTGGAGGTATCAAAGGTCTCATGTCACTACCTGAAGATGGTAGTGAATCAACGTACGTCACTCTATAAATCTATTCATTCAAAACACTTATCCTTAACAGATGATTGATTAATAATCTAATATACGCAGTGCCTTTATTGAGGATTGGGTAAAAATTTGTTTACCTGCCAAGGCAAAGGTTCTGGCCGATCACGGAGGGAAAGAATTTGCACATCAATGCACAGCTTGTGAGAAGGTAAAATTCAAATTTAACTTTTTGATTATCAATTAATTACATATATAGCAGTATTTTATAATTGATGAAAAATGTTGCAGGAAGCTGTGAACGTTTCACTTGGAAATCTGCTTACGTATCCATTCGTGAGAGAAGGATTGGTGAAGAAAACATTGGCATTGAAGGGAGGTTACTATGATT</genome_strand>
        <mrna_strand>GCATTCGACCCTGTTGAGCACATGAAAGCTTTCTTTATTCATTTCAAGACTGAGAAATATGA..................................................................................................CACAAACCCAGCCTTATATGGTGAGCTAGCAAAGGGCCAGAGCCCTAAG....................................................................................TTCATGGTTTTCGCGTGCTCTGACTCACGAGTCTGCCCATCCCATGTCCTCAACTTCCAACCTGGTGAGGCATTCATGGTTCGTAACATCGCCAACATGGTCCCTGCTTATGACAAG.....................................................................................GTCAGGTACTCTGGAGTAGGAGCAGCCATTGAATACGCCGTTCTTCATCTTAAGGTGGAGAACATCGTTGTCATTGGCCACAGTGCTTGTGGAGGTATCAAAGGTCTCATGTCACTACCTGAAGATGGTAGTGAATCAAC.............................................................................TGCCTTTATTGAGGATTGGGTAAAAATTTGTTTACCGGCCAAGGCAAAGGTTCTGGCCGATCACGGAGGGAAAGAATTTGCACATCAATGCACAGCTTGTGAGAAG................................................................................GAAGCTGTGAACGTTTCACTTGGAAATCTGCTTACGTATCCATTCGTGAGAGAAGGATTGGTGAAGAAAACATTGGCATTGAAGGGAGGTTACTATGATT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0236E02-u8qcS/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E296160" ref_strand="+" ref_description="SGN-E296160 [cLET-24-H18]">
      <seq>gcattcgaccctgttgagcacatgaaagctggctttattcatttcaagactgagaaatatgacacaaacccagccttatatggtgagctagcaaagggccagagccctaagttcatggttttcgcgtgctctgactcacgagtctgcccatcccatgtcctcaacttccaacctggtgaggcattcatggttcgtaacatcgccaacatggtccctgcttatgacaaggtcaggtactctggagtaggagcagccattgaatacgccgttcttcatcttaaggtggagaacatcgttgtcattggccacagtgcttgtggaggtatcaaaggtctcatgtcactacctgaagatggtagtgaatcaactgcctttattgaggattgggtaaaaatttgtttacctgccaaggcaaaggttctggccgatcacggagggaaagaatttgcacatcaatgcacagcttgtgagaaggaagctgtgaacgtttcacttggaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0236E02-u8qcS/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0236E02.1" temp_strand="+" temp_description="C02HBa0236E02.1  AC215430.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0236E02 sequenced_by:kribb upload_account_name:korea">
        <position start="16596" stop="18118"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="16896" g_stop="16957" g_length="62"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="62" r_length="62" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="16958" i_stop="17055" i_length="98">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="17056" g_stop="17104" g_length="49"/>
          <reference_exon_boundary r_type="cDNA" r_start="63" r_stop="111" r_length="49" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="17105" i_stop="17188" i_length="84">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.961" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="17189" g_stop="17305" g_length="117"/>
          <reference_exon_boundary r_type="cDNA" r_start="112" r_stop="228" r_length="117" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="17306" i_stop="17390" i_length="85">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.979" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="17391" g_stop="17530" g_length="140"/>
          <reference_exon_boundary r_type="cDNA" r_start="229" r_stop="368" r_length="140" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="17531" i_stop="17607" i_length="77">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.948" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="17608" g_stop="17713" g_length="106"/>
          <reference_exon_boundary r_type="cDNA" r_start="369" r_stop="474" r_length="106" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="17714" i_stop="17793" i_length="80">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="17794" g_stop="17818" g_length="25"/>
          <reference_exon_boundary r_type="cDNA" r_start="475" r_stop="499" r_length="25" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0236E02.1" gen_strand="+" ref_id="SGN-E296160" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>499</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0236E02.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E296160" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="16896" e_stop="16957"/>
          <exon e_start="17056" e_stop="17104"/>
          <exon e_start="17189" e_stop="17305"/>
          <exon e_start="17391" e_stop="17530"/>
          <exon e_start="17608" e_stop="17713"/>
          <exon e_start="17794" e_stop="17818"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCATTCGACCCTGTTGAGCACATGAAAGCTGGCTTTATTCATTTCAAGACTGAGAAATATGAGTAAGCAAATTCATTCAAATTAAAATTTCTGCATATTTGATGTTGTAACATTATTAGTGTCTGATAATTTTTCCTGTTTTCTATTTATGTACCAACAGCACAAACCCAGCCTTATATGGTGAGCTAGCAAAGGGCCAGAGCCCTAAGGTACAAATTCCTTGTTAATTTGTTGTCTAATTTTATGATTTGTACGGTTTCTGATGAGTTCTATTGTCCTAAATGTGTAAACAGTTCATGGTTTTCGCGTGCTCTGACTCACGAGTCTGCCCATCCCATGTCCTCAACTTCCAACCTGGTGAGGCATTCATGGTTCGTAACATCGCCAACATGGTCCCTGCTTATGACAAGGTCAGTTACAAATCGATCAACTAGTCGATTATTTCGCTCTGGAATTGTGTTTTTTAAAAATAAAGATGGAATTGAATTTTTACAGGTCAGGTACTCTGGAGTAGGAGCAGCCATTGAATACGCCGTTCTTCATCTTAAGGTGGAGAACATCGTTGTCATTGGCCACAGTGCTTGTGGAGGTATCAAAGGTCTCATGTCACTACCTGAAGATGGTAGTGAATCAACGTACGTCACTCTATAAATCTATTCATTCAAAACACTTATCCTTAACAGATGATTGATTAATAATCTAATATACGCAGTGCCTTTATTGAGGATTGGGTAAAAATTTGTTTACCTGCCAAGGCAAAGGTTCTGGCCGATCACGGAGGGAAAGAATTTGCACATCAATGCACAGCTTGTGAGAAGGTAAAATTCAAATTTAACTTTTTGATTATCAATTAATTACATATATAGCAGTATTTTATAATTGATGAAAAATGTTGCAGGAAGCTGTGAACGTTTCACTTGGAA</genome_strand>
        <mrna_strand>GCATTCGACCCTGTTGAGCACATGAAAGCTGGCTTTATTCATTTCAAGACTGAGAAATATGA..................................................................................................CACAAACCCAGCCTTATATGGTGAGCTAGCAAAGGGCCAGAGCCCTAAG....................................................................................TTCATGGTTTTCGCGTGCTCTGACTCACGAGTCTGCCCATCCCATGTCCTCAACTTCCAACCTGGTGAGGCATTCATGGTTCGTAACATCGCCAACATGGTCCCTGCTTATGACAAG.....................................................................................GTCAGGTACTCTGGAGTAGGAGCAGCCATTGAATACGCCGTTCTTCATCTTAAGGTGGAGAACATCGTTGTCATTGGCCACAGTGCTTGTGGAGGTATCAAAGGTCTCATGTCACTACCTGAAGATGGTAGTGAATCAAC.............................................................................TGCCTTTATTGAGGATTGGGTAAAAATTTGTTTACCTGCCAAGGCAAAGGTTCTGGCCGATCACGGAGGGAAAGAATTTGCACATCAATGCACAGCTTGTGAGAAG................................................................................GAAGCTGTGAACGTTTCACTTGGAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0236E02-u8qcS/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E734210" ref_strand="+" ref_description="SGN-E734210 [LB12AC09]">
      <seq>gctttattcatttcaagactgagaaatatgacacaaacccagccttatatggtgagctagcaaagggccagagccctaagttcatggttttcgcgtgctctgactcacgagtctgcccatcccatgtcctcaacttccaacctggtgaggcattcatggttcgtaacatcgccaacatggtccctgcttatgacaaggtcaggtactctggagtaggagcagccattgaatacgccgttcttcatcttaaggtggagaacatcgttgtcattggccacagtgcttgtggaggtatcaaaggtctcatgtcactacctgaagatggtagtgaatcaactgcctttattgaggattgggtaaaaatttgtttacctgccaaggcaaaggttctggccgatcacggagggaaagaatttgcacatcaatgcacagcttgtgagaaggaagctgtgaacgtttcacttggaaatctgcttacgtatccattcgtgagagaaggattggtgaagaaaacattggcattgaagggaggttactatgatttcgtgaagggtggatttgagctgtggggacttgagttcggtctttctcctcctctttccgtatgaacttaattcaattaccatttggccctcacaatttccttccttttttttttttttcgcctgacagaacttttgcttcgcaaaatcaactgggggaatgttgtttgaatgaatt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0236E02-u8qcS/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0236E02.1" temp_strand="+" temp_description="C02HBa0236E02.1  AC215430.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0236E02 sequenced_by:kribb upload_account_name:korea">
        <position start="16627" stop="18369"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="16927" g_stop="16957" g_length="31"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="31" r_length="31" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="16958" i_stop="17055" i_length="98">
            <donor d_prob="0.999" d_score="0.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="17056" g_stop="17104" g_length="49"/>
          <reference_exon_boundary r_type="cDNA" r_start="32" r_stop="80" r_length="49" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="17105" i_stop="17188" i_length="84">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.961" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="17189" g_stop="17305" g_length="117"/>
          <reference_exon_boundary r_type="cDNA" r_start="81" r_stop="197" r_length="117" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="17306" i_stop="17390" i_length="85">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.979" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="17391" g_stop="17530" g_length="140"/>
          <reference_exon_boundary r_type="cDNA" r_start="198" r_stop="337" r_length="140" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="17531" i_stop="17607" i_length="77">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.948" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="17608" g_stop="17713" g_length="106"/>
          <reference_exon_boundary r_type="cDNA" r_start="338" r_stop="443" r_length="106" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="17714" i_stop="17793" i_length="80">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="17794" g_stop="18069" g_length="276"/>
          <reference_exon_boundary r_type="cDNA" r_start="444" r_stop="720" r_length="277" r_score="0.971"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0236E02.1" gen_strand="+" ref_id="SGN-E734210" ref_strand="+">
        <total_alignment_score>0.987</total_alignment_score>
        <cumulative_length_of_scored_exons>719</cumulative_length_of_scored_exons>
        <coverage percentage="0.999" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0236E02.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E734210" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="16927" e_stop="16957"/>
          <exon e_start="17056" e_stop="17104"/>
          <exon e_start="17189" e_stop="17305"/>
          <exon e_start="17391" e_stop="17530"/>
          <exon e_start="17608" e_stop="17713"/>
          <exon e_start="17794" e_stop="18069"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCTTTATTCATTTCAAGACTGAGAAATATGAGTAAGCAAATTCATTCAAATTAAAATTTCTGCATATTTGATGTTGTAACATTATTAGTGTCTGATAATTTTTCCTGTTTTCTATTTATGTACCAACAGCACAAACCCAGCCTTATATGGTGAGCTAGCAAAGGGCCAGAGCCCTAAGGTACAAATTCCTTGTTAATTTGTTGTCTAATTTTATGATTTGTACGGTTTCTGATGAGTTCTATTGTCCTAAATGTGTAAACAGTTCATGGTTTTCGCGTGCTCTGACTCACGAGTCTGCCCATCCCATGTCCTCAACTTCCAACCTGGTGAGGCATTCATGGTTCGTAACATCGCCAACATGGTCCCTGCTTATGACAAGGTCAGTTACAAATCGATCAACTAGTCGATTATTTCGCTCTGGAATTGTGTTTTTTAAAAATAAAGATGGAATTGAATTTTTACAGGTCAGGTACTCTGGAGTAGGAGCAGCCATTGAATACGCCGTTCTTCATCTTAAGGTGGAGAACATCGTTGTCATTGGCCACAGTGCTTGTGGAGGTATCAAAGGTCTCATGTCACTACCTGAAGATGGTAGTGAATCAACGTACGTCACTCTATAAATCTATTCATTCAAAACACTTATCCTTAACAGATGATTGATTAATAATCTAATATACGCAGTGCCTTTATTGAGGATTGGGTAAAAATTTGTTTACCTGCCAAGGCAAAGGTTCTGGCCGATCACGGAGGGAAAGAATTTGCACATCAATGCACAGCTTGTGAGAAGGTAAAATTCAAATTTAACTTTTTGATTATCAATTAATTACATATATAGCAGTATTTTATAATTGATGAAAAATGTTGCAGGAAGCTGTGAACGTTTCACTTGGAAATCTGCTTACGTATCCATTCGTGAGAGAAGGATTGGTGAAGAAAACATTGGCATTGAAGGGAGGTTACTATGATTTCGTGAAGGGTGGATTTGAGCTGTGGGGACTTGAGTTCGGTCTTTCTCCTCCTCTTTCCGTATGAACTTAATTCAATTACCATTTGGCCCTCACAATTTCCTTCC-TTTTTTTTTTTTTCGCCTGACAGTACTTTTGCTTCGCAAAATCAACTGTGTGTATGTTGTTTGTATGTATT</genome_strand>
        <mrna_strand>GCTTTATTCATTTCAAGACTGAGAAATATGA..................................................................................................CACAAACCCAGCCTTATATGGTGAGCTAGCAAAGGGCCAGAGCCCTAAG....................................................................................TTCATGGTTTTCGCGTGCTCTGACTCACGAGTCTGCCCATCCCATGTCCTCAACTTCCAACCTGGTGAGGCATTCATGGTTCGTAACATCGCCAACATGGTCCCTGCTTATGACAAG.....................................................................................GTCAGGTACTCTGGAGTAGGAGCAGCCATTGAATACGCCGTTCTTCATCTTAAGGTGGAGAACATCGTTGTCATTGGCCACAGTGCTTGTGGAGGTATCAAAGGTCTCATGTCACTACCTGAAGATGGTAGTGAATCAAC.............................................................................TGCCTTTATTGAGGATTGGGTAAAAATTTGTTTACCTGCCAAGGCAAAGGTTCTGGCCGATCACGGAGGGAAAGAATTTGCACATCAATGCACAGCTTGTGAGAAG................................................................................GAAGCTGTGAACGTTTCACTTGGAAATCTGCTTACGTATCCATTCGTGAGAGAAGGATTGGTGAAGAAAACATTGGCATTGAAGGGAGGTTACTATGATTTCGTGAAGGGTGGATTTGAGCTGTGGGGACTTGAGTTCGGTCTTTCTCCTCCTCTTTCCGTATGAACTTAATTCAATTACCATTTGGCCCTCACAATTTCCTTCCTTTTTTTTTTTTTTCGCCTGACAGAACTTTTGCTTCGCAAAATCAACTGGGGGAATGTTGTTTGAATGAATT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0236E02-u8qcS/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E734101" ref_strand="+" ref_description="SGN-E734101 [LB11DB07]">
      <seq>ctttattcatttcaagactgagaaatatgacacaaacccagccttatatggtgagctagcaaagggccagagccctaagttcatggttttcgcgtgctctgactcacgagtctgcccatcccatgtcctcaacttccaacctggtgaggcattcatggttcgtaacatcgccaacatggtccctgcttatgacaaggtcaggtactctggagtaggagcagccattgaatacgccgttcttcatcttaaggtggagaacatcgttgtcattggccacagtgcttgtggaggtatcaaaggtctcatgtcactacctgaagatggtagtgaatcaactgcctttattgaggattgggtaaaaatttgtttacctgccaaggcaaaggttctggccgatcacggagggaaagaatttgcacatcaatgcacagcttgtgagaaggaagctgtgaacgtttcacttggaaatctgcttacgtatccattcgtgagagaaggattggtgaagaaaacattggcattgaagggaggttactatgatttcgtgaagggtggatttgagctgtggggacttgagttcggtctttctcctcctctttccgtatgaacttaattcaattaccatttggccctcacaatttccttcctttttttttttttttcccctgacagaatttttgcttcccaaaaccaacggggggaatgttgttggaatgaattaggaaggaataaatcaaatatggaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0236E02-u8qcS/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0236E02.1" temp_strand="+" temp_description="C02HBa0236E02.1  AC215430.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0236E02 sequenced_by:kribb upload_account_name:korea">
        <position start="16628" stop="97884"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="16928" g_stop="16957" g_length="30"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="30" r_length="30" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="16958" i_stop="17055" i_length="98">
            <donor d_prob="0.999" d_score="0.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="17056" g_stop="17104" g_length="49"/>
          <reference_exon_boundary r_type="cDNA" r_start="31" r_stop="79" r_length="49" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="17105" i_stop="17188" i_length="84">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.961" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="17189" g_stop="17305" g_length="117"/>
          <reference_exon_boundary r_type="cDNA" r_start="80" r_stop="196" r_length="117" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="17306" i_stop="17390" i_length="85">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.979" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="17391" g_stop="17530" g_length="140"/>
          <reference_exon_boundary r_type="cDNA" r_start="197" r_stop="336" r_length="140" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="17531" i_stop="17607" i_length="77">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.948" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="17608" g_stop="17713" g_length="106"/>
          <reference_exon_boundary r_type="cDNA" r_start="337" r_stop="442" r_length="106" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="17714" i_stop="17793" i_length="80">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="17794" g_stop="18096" g_length="303"/>
          <reference_exon_boundary r_type="cDNA" r_start="443" r_stop="747" r_length="305" r_score="0.927"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0236E02.1" gen_strand="+" ref_id="SGN-E734101" ref_strand="+">
        <total_alignment_score>0.967</total_alignment_score>
        <cumulative_length_of_scored_exons>745</cumulative_length_of_scored_exons>
        <coverage percentage="0.997" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0236E02.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E734101" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="16928" e_stop="16957"/>
          <exon e_start="17056" e_stop="17104"/>
          <exon e_start="17189" e_stop="17305"/>
          <exon e_start="17391" e_stop="17530"/>
          <exon e_start="17608" e_stop="17713"/>
          <exon e_start="17794" e_stop="18096"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTTTATTCATTTCAAGACTGAGAAATATGAGTAAGCAAATTCATTCAAATTAAAATTTCTGCATATTTGATGTTGTAACATTATTAGTGTCTGATAATTTTTCCTGTTTTCTATTTATGTACCAACAGCACAAACCCAGCCTTATATGGTGAGCTAGCAAAGGGCCAGAGCCCTAAGGTACAAATTCCTTGTTAATTTGTTGTCTAATTTTATGATTTGTACGGTTTCTGATGAGTTCTATTGTCCTAAATGTGTAAACAGTTCATGGTTTTCGCGTGCTCTGACTCACGAGTCTGCCCATCCCATGTCCTCAACTTCCAACCTGGTGAGGCATTCATGGTTCGTAACATCGCCAACATGGTCCCTGCTTATGACAAGGTCAGTTACAAATCGATCAACTAGTCGATTATTTCGCTCTGGAATTGTGTTTTTTAAAAATAAAGATGGAATTGAATTTTTACAGGTCAGGTACTCTGGAGTAGGAGCAGCCATTGAATACGCCGTTCTTCATCTTAAGGTGGAGAACATCGTTGTCATTGGCCACAGTGCTTGTGGAGGTATCAAAGGTCTCATGTCACTACCTGAAGATGGTAGTGAATCAACGTACGTCACTCTATAAATCTATTCATTCAAAACACTTATCCTTAACAGATGATTGATTAATAATCTAATATACGCAGTGCCTTTATTGAGGATTGGGTAAAAATTTGTTTACCTGCCAAGGCAAAGGTTCTGGCCGATCACGGAGGGAAAGAATTTGCACATCAATGCACAGCTTGTGAGAAGGTAAAATTCAAATTTAACTTTTTGATTATCAATTAATTACATATATAGCAGTATTTTATAATTGATGAAAAATGTTGCAGGAAGCTGTGAACGTTTCACTTGGAAATCTGCTTACGTATCCATTCGTGAGAGAAGGATTGGTGAAGAAAACATTGGCATTGAAGGGAGGTTACTATGATTTCGTGAAGGGTGGATTTGAGCTGTGGGGACTTGAGTTCGGTCTTTCTCCTCCTCTTTCCGTATGAACTTAATTCAATTACCATTTGGCCCTCACAATTTCCTTCC--TTTTTTTTTTTTTCGCCTGACAGTACTTTTGCTTCGCAAAATCAACTGTGTGTATGTTGTTTGTATGTATTATGTATGTATGAATCAAATATGGAAGA</genome_strand>
        <mrna_strand>CTTTATTCATTTCAAGACTGAGAAATATGA..................................................................................................CACAAACCCAGCCTTATATGGTGAGCTAGCAAAGGGCCAGAGCCCTAAG....................................................................................TTCATGGTTTTCGCGTGCTCTGACTCACGAGTCTGCCCATCCCATGTCCTCAACTTCCAACCTGGTGAGGCATTCATGGTTCGTAACATCGCCAACATGGTCCCTGCTTATGACAAG.....................................................................................GTCAGGTACTCTGGAGTAGGAGCAGCCATTGAATACGCCGTTCTTCATCTTAAGGTGGAGAACATCGTTGTCATTGGCCACAGTGCTTGTGGAGGTATCAAAGGTCTCATGTCACTACCTGAAGATGGTAGTGAATCAAC.............................................................................TGCCTTTATTGAGGATTGGGTAAAAATTTGTTTACCTGCCAAGGCAAAGGTTCTGGCCGATCACGGAGGGAAAGAATTTGCACATCAATGCACAGCTTGTGAGAAG................................................................................GAAGCTGTGAACGTTTCACTTGGAAATCTGCTTACGTATCCATTCGTGAGAGAAGGATTGGTGAAGAAAACATTGGCATTGAAGGGAGGTTACTATGATTTCGTGAAGGGTGGATTTGAGCTGTGGGGACTTGAGTTCGGTCTTTCTCCTCCTCTTTCCGTATGAACTTAATTCAATTACCATTTGGCCCTCACAATTTCCTTCCTTTTTTTTTTTTTTTCCCCTGACAGAATTTTTGCTTCCCAAAACCAACGGGGGGAATGTTGTTGGAATGAATTAGGAAGGAATAAATCAAATATGGAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0236E02-u8qcS/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E283889" ref_strand="+" ref_description="SGN-E283889 [cLER-13-C8]">
      <seq>tttattcatttcaagactgagaaatatgacacaaacccagccttatatggtgagctagcaaagggccagagccctaagttcatggttttcgcgtgctctgactcacgagtctgcccatcccatgtcctcaacttccaacctggtgaggcattcatggttcgtaacatcgccaacatggtccctgcttatgacaaggtcaggtactctggagtaggagcagccattgaatacgccgttcttcatcttaaggtggagaacatcgttgtcattggccacagtgcttgtggaggtatcaaaggtctcatgtcactacctgaagatggtagtgaatcaactgcctttattgaggattgggtaaaaatttgtttacctgccaaggcaaaggttctggccgatcacggagggaaagaatttgcacatcaatgcacagcttgtgagaaggaagctgtgaacgtttcacttggaaatctgcttacgtatccattcgtgagagaaggattggtgaagaaaacattggcattgaagggaggttactatgatttcgtgaagggtggatttgagctgtggggacttg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0236E02-u8qcS/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0236E02.1" temp_strand="+" temp_description="C02HBa0236E02.1  AC215430.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0236E02 sequenced_by:kribb upload_account_name:korea">
        <position start="16629" stop="18226"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="16929" g_stop="16957" g_length="29"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="29" r_length="29" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="16958" i_stop="17055" i_length="98">
            <donor d_prob="0.999" d_score="0.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="17056" g_stop="17104" g_length="49"/>
          <reference_exon_boundary r_type="cDNA" r_start="30" r_stop="78" r_length="49" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="17105" i_stop="17188" i_length="84">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.961" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="17189" g_stop="17305" g_length="117"/>
          <reference_exon_boundary r_type="cDNA" r_start="79" r_stop="195" r_length="117" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="17306" i_stop="17390" i_length="85">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.979" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="17391" g_stop="17530" g_length="140"/>
          <reference_exon_boundary r_type="cDNA" r_start="196" r_stop="335" r_length="140" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="17531" i_stop="17607" i_length="77">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.948" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="17608" g_stop="17713" g_length="106"/>
          <reference_exon_boundary r_type="cDNA" r_start="336" r_stop="441" r_length="106" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="17714" i_stop="17793" i_length="80">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="17794" g_stop="17926" g_length="133"/>
          <reference_exon_boundary r_type="cDNA" r_start="442" r_stop="574" r_length="133" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0236E02.1" gen_strand="+" ref_id="SGN-E283889" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>574</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0236E02.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E283889" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="16929" e_stop="16957"/>
          <exon e_start="17056" e_stop="17104"/>
          <exon e_start="17189" e_stop="17305"/>
          <exon e_start="17391" e_stop="17530"/>
          <exon e_start="17608" e_stop="17713"/>
          <exon e_start="17794" e_stop="17926"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTATTCATTTCAAGACTGAGAAATATGAGTAAGCAAATTCATTCAAATTAAAATTTCTGCATATTTGATGTTGTAACATTATTAGTGTCTGATAATTTTTCCTGTTTTCTATTTATGTACCAACAGCACAAACCCAGCCTTATATGGTGAGCTAGCAAAGGGCCAGAGCCCTAAGGTACAAATTCCTTGTTAATTTGTTGTCTAATTTTATGATTTGTACGGTTTCTGATGAGTTCTATTGTCCTAAATGTGTAAACAGTTCATGGTTTTCGCGTGCTCTGACTCACGAGTCTGCCCATCCCATGTCCTCAACTTCCAACCTGGTGAGGCATTCATGGTTCGTAACATCGCCAACATGGTCCCTGCTTATGACAAGGTCAGTTACAAATCGATCAACTAGTCGATTATTTCGCTCTGGAATTGTGTTTTTTAAAAATAAAGATGGAATTGAATTTTTACAGGTCAGGTACTCTGGAGTAGGAGCAGCCATTGAATACGCCGTTCTTCATCTTAAGGTGGAGAACATCGTTGTCATTGGCCACAGTGCTTGTGGAGGTATCAAAGGTCTCATGTCACTACCTGAAGATGGTAGTGAATCAACGTACGTCACTCTATAAATCTATTCATTCAAAACACTTATCCTTAACAGATGATTGATTAATAATCTAATATACGCAGTGCCTTTATTGAGGATTGGGTAAAAATTTGTTTACCTGCCAAGGCAAAGGTTCTGGCCGATCACGGAGGGAAAGAATTTGCACATCAATGCACAGCTTGTGAGAAGGTAAAATTCAAATTTAACTTTTTGATTATCAATTAATTACATATATAGCAGTATTTTATAATTGATGAAAAATGTTGCAGGAAGCTGTGAACGTTTCACTTGGAAATCTGCTTACGTATCCATTCGTGAGAGAAGGATTGGTGAAGAAAACATTGGCATTGAAGGGAGGTTACTATGATTTCGTGAAGGGTGGATTTGAGCTGTGGGGACTTG</genome_strand>
        <mrna_strand>TTTATTCATTTCAAGACTGAGAAATATGA..................................................................................................CACAAACCCAGCCTTATATGGTGAGCTAGCAAAGGGCCAGAGCCCTAAG....................................................................................TTCATGGTTTTCGCGTGCTCTGACTCACGAGTCTGCCCATCCCATGTCCTCAACTTCCAACCTGGTGAGGCATTCATGGTTCGTAACATCGCCAACATGGTCCCTGCTTATGACAAG.....................................................................................GTCAGGTACTCTGGAGTAGGAGCAGCCATTGAATACGCCGTTCTTCATCTTAAGGTGGAGAACATCGTTGTCATTGGCCACAGTGCTTGTGGAGGTATCAAAGGTCTCATGTCACTACCTGAAGATGGTAGTGAATCAAC.............................................................................TGCCTTTATTGAGGATTGGGTAAAAATTTGTTTACCTGCCAAGGCAAAGGTTCTGGCCGATCACGGAGGGAAAGAATTTGCACATCAATGCACAGCTTGTGAGAAG................................................................................GAAGCTGTGAACGTTTCACTTGGAAATCTGCTTACGTATCCATTCGTGAGAGAAGGATTGGTGAAGAAAACATTGGCATTGAAGGGAGGTTACTATGATTTCGTGAAGGGTGGATTTGAGCTGTGGGGACTTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0236E02-u8qcS/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E298369" ref_strand="+" ref_description="SGN-E298369 [cLET-41-L19]">
      <seq>tcatttcaagactgagaaatatgacacaaacccagccttatatggtgagctagcaaagggccagagccctaagttcatggttttcgcgtgctctgactcacgagtctgcccatcccatgtcctcaacttccaacctggtgaggcattcatggttcgtaacatcgccaacatggtccctgcttatgacaaggtcaggtactctggagtaggagcagccattgaatacgccgttcttcatcttaaggtggagaacatcgttgtcattggccacagtgcttgtggaggtatcaaaggtctcatgtcactacctgaagatggtagtgaatcaactgcctttattgaggattgggtaaaaatttgtttacctgccaaggcaaaggttctggccgatcacggagggaaagaatttgcacatcaatgcacagcttgtgagaaggaagctgtgaacgtttcacttggaaatctgcttacgtatccattcgtgagagaaggattggtgaagaaaacattggcattg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0236E02-u8qcS/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0236E02.1" temp_strand="+" temp_description="C02HBa0236E02.1  AC215430.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0236E02 sequenced_by:kribb upload_account_name:korea">
        <position start="16634" stop="18174"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="16934" g_stop="16957" g_length="24"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="24" r_length="24" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="16958" i_stop="17055" i_length="98">
            <donor d_prob="0.999" d_score="0.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="17056" g_stop="17104" g_length="49"/>
          <reference_exon_boundary r_type="cDNA" r_start="25" r_stop="73" r_length="49" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="17105" i_stop="17188" i_length="84">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.961" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="17189" g_stop="17305" g_length="117"/>
          <reference_exon_boundary r_type="cDNA" r_start="74" r_stop="190" r_length="117" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="17306" i_stop="17390" i_length="85">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.979" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="17391" g_stop="17530" g_length="140"/>
          <reference_exon_boundary r_type="cDNA" r_start="191" r_stop="330" r_length="140" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="17531" i_stop="17607" i_length="77">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.948" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="17608" g_stop="17713" g_length="106"/>
          <reference_exon_boundary r_type="cDNA" r_start="331" r_stop="436" r_length="106" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="17714" i_stop="17793" i_length="80">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="17794" g_stop="17874" g_length="81"/>
          <reference_exon_boundary r_type="cDNA" r_start="437" r_stop="517" r_length="81" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0236E02.1" gen_strand="+" ref_id="SGN-E298369" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>517</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0236E02.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E298369" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="16934" e_stop="16957"/>
          <exon e_start="17056" e_stop="17104"/>
          <exon e_start="17189" e_stop="17305"/>
          <exon e_start="17391" e_stop="17530"/>
          <exon e_start="17608" e_stop="17713"/>
          <exon e_start="17794" e_stop="17874"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCATTTCAAGACTGAGAAATATGAGTAAGCAAATTCATTCAAATTAAAATTTCTGCATATTTGATGTTGTAACATTATTAGTGTCTGATAATTTTTCCTGTTTTCTATTTATGTACCAACAGCACAAACCCAGCCTTATATGGTGAGCTAGCAAAGGGCCAGAGCCCTAAGGTACAAATTCCTTGTTAATTTGTTGTCTAATTTTATGATTTGTACGGTTTCTGATGAGTTCTATTGTCCTAAATGTGTAAACAGTTCATGGTTTTCGCGTGCTCTGACTCACGAGTCTGCCCATCCCATGTCCTCAACTTCCAACCTGGTGAGGCATTCATGGTTCGTAACATCGCCAACATGGTCCCTGCTTATGACAAGGTCAGTTACAAATCGATCAACTAGTCGATTATTTCGCTCTGGAATTGTGTTTTTTAAAAATAAAGATGGAATTGAATTTTTACAGGTCAGGTACTCTGGAGTAGGAGCAGCCATTGAATACGCCGTTCTTCATCTTAAGGTGGAGAACATCGTTGTCATTGGCCACAGTGCTTGTGGAGGTATCAAAGGTCTCATGTCACTACCTGAAGATGGTAGTGAATCAACGTACGTCACTCTATAAATCTATTCATTCAAAACACTTATCCTTAACAGATGATTGATTAATAATCTAATATACGCAGTGCCTTTATTGAGGATTGGGTAAAAATTTGTTTACCTGCCAAGGCAAAGGTTCTGGCCGATCACGGAGGGAAAGAATTTGCACATCAATGCACAGCTTGTGAGAAGGTAAAATTCAAATTTAACTTTTTGATTATCAATTAATTACATATATAGCAGTATTTTATAATTGATGAAAAATGTTGCAGGAAGCTGTGAACGTTTCACTTGGAAATCTGCTTACGTATCCATTCGTGAGAGAAGGATTGGTGAAGAAAACATTGGCATTG</genome_strand>
        <mrna_strand>TCATTTCAAGACTGAGAAATATGA..................................................................................................CACAAACCCAGCCTTATATGGTGAGCTAGCAAAGGGCCAGAGCCCTAAG....................................................................................TTCATGGTTTTCGCGTGCTCTGACTCACGAGTCTGCCCATCCCATGTCCTCAACTTCCAACCTGGTGAGGCATTCATGGTTCGTAACATCGCCAACATGGTCCCTGCTTATGACAAG.....................................................................................GTCAGGTACTCTGGAGTAGGAGCAGCCATTGAATACGCCGTTCTTCATCTTAAGGTGGAGAACATCGTTGTCATTGGCCACAGTGCTTGTGGAGGTATCAAAGGTCTCATGTCACTACCTGAAGATGGTAGTGAATCAAC.............................................................................TGCCTTTATTGAGGATTGGGTAAAAATTTGTTTACCTGCCAAGGCAAAGGTTCTGGCCGATCACGGAGGGAAAGAATTTGCACATCAATGCACAGCTTGTGAGAAG................................................................................GAAGCTGTGAACGTTTCACTTGGAAATCTGCTTACGTATCCATTCGTGAGAGAAGGATTGGTGAAGAAAACATTGGCATTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0236E02-u8qcS/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E691066" ref_strand="+" ref_description="SGN-E691066 [LH_Ea05C08]">
      <seq>ccgttaagatgatacaaacccagccttatatggtgaactagccttgggccagagccctaagttcatggttttcgcgtgctctgactcacgagtgtgcccatcccatgtcctcaacttccaacctggtgaggcattcatggttcgtaacattgccaacatggtccctgcttatgacaaggtcaggtactctggagtaggagcagccattgaatacgcggttcttcatcttaaggtggagaacatcgttgtcattggccacagtgcttgtggaggtatcaaaggtctcatgtcactacctgaagatggtagtgaatcaactgcctttattgaggattgggtgaaaatttgtttacctgccaaggcaaaggttctggccgatcacggagggaaagaatttggacatcaatgcacagcttgtgagaaggaagctgtgaacgtttcacttggaaatctgcttacgtatccattcgtgagagaaggattggtgaagaaaacattggcattgaagggaggatactatgatttcgtgaagggtggatttgagctgtggggacttgagttcggtctttctcctcctctttccgtatgaacttaattcaattaccatttggccctcacaatttccttcctttttttttttcgcctgacagtatttttgcttcgcaaaatcaactgtgtatgttgtttgtatgtattatgtatgtatgaatcaaatatggaagagcactcgttgttatatttctgaaataaataaaatggagactacttttggtataaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0236E02-u8qcS/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0236E02.1" temp_strand="+" temp_description="C02HBa0236E02.1  AC215430.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0236E02 sequenced_by:kribb upload_account_name:korea">
        <position start="16757" stop="18453"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="16945" g_stop="16957" g_length="13"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="12" r_length="12" r_score="0.615"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="16958" i_stop="17055" i_length="98">
            <donor d_prob="0.999" d_score="0.00"/>
            <acceptor a_prob="0.999" a_score="0.90"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="17056" g_stop="17104" g_length="49"/>
          <reference_exon_boundary r_type="cDNA" r_start="13" r_stop="61" r_length="49" r_score="0.898"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="17105" i_stop="17188" i_length="84">
            <donor d_prob="1.000" d_score="0.90"/>
            <acceptor a_prob="0.961" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="17189" g_stop="17305" g_length="117"/>
          <reference_exon_boundary r_type="cDNA" r_start="62" r_stop="178" r_length="117" r_score="0.983"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="17306" i_stop="17390" i_length="85">
            <donor d_prob="0.999" d_score="0.98"/>
            <acceptor a_prob="0.979" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="17391" g_stop="17530" g_length="140"/>
          <reference_exon_boundary r_type="cDNA" r_start="179" r_stop="318" r_length="140" r_score="0.993"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="17531" i_stop="17607" i_length="77">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.948" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="17608" g_stop="17713" g_length="106"/>
          <reference_exon_boundary r_type="cDNA" r_start="319" r_stop="424" r_length="106" r_score="0.981"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="17714" i_stop="17793" i_length="80">
            <donor d_prob="1.000" d_score="0.98"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="17794" g_stop="18159" g_length="366"/>
          <reference_exon_boundary r_type="cDNA" r_start="425" r_stop="786" r_length="362" r_score="0.962"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0236E02.1" gen_strand="+" ref_id="SGN-E691066" ref_strand="+">
        <total_alignment_score>0.974</total_alignment_score>
        <cumulative_length_of_scored_exons>791</cumulative_length_of_scored_exons>
        <coverage percentage="1.006" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0236E02.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E691066" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="16945" e_stop="16957"/>
          <exon e_start="17056" e_stop="17104"/>
          <exon e_start="17189" e_stop="17305"/>
          <exon e_start="17391" e_stop="17530"/>
          <exon e_start="17608" e_stop="17713"/>
          <exon e_start="17794" e_stop="18159"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTGAGAAATATGAGTAAGCAAATTCATTCAAATTAAAATTTCTGCATATTTGATGTTGTAACATTATTAGTGTCTGATAATTTTTCCTGTTTTCTATTTATGTACCAACAGCACAAACCCAGCCTTATATGGTGAGCTAGCAAAGGGCCAGAGCCCTAAGGTACAAATTCCTTGTTAATTTGTTGTCTAATTTTATGATTTGTACGGTTTCTGATGAGTTCTATTGTCCTAAATGTGTAAACAGTTCATGGTTTTCGCGTGCTCTGACTCACGAGTCTGCCCATCCCATGTCCTCAACTTCCAACCTGGTGAGGCATTCATGGTTCGTAACATCGCCAACATGGTCCCTGCTTATGACAAGGTCAGTTACAAATCGATCAACTAGTCGATTATTTCGCTCTGGAATTGTGTTTTTTAAAAATAAAGATGGAATTGAATTTTTACAGGTCAGGTACTCTGGAGTAGGAGCAGCCATTGAATACGCCGTTCTTCATCTTAAGGTGGAGAACATCGTTGTCATTGGCCACAGTGCTTGTGGAGGTATCAAAGGTCTCATGTCACTACCTGAAGATGGTAGTGAATCAACGTACGTCACTCTATAAATCTATTCATTCAAAACACTTATCCTTAACAGATGATTGATTAATAATCTAATATACGCAGTGCCTTTATTGAGGATTGGGTAAAAATTTGTTTACCTGCCAAGGCAAAGGTTCTGGCCGATCACGGAGGGAAAGAATTTGCACATCAATGCACAGCTTGTGAGAAGGTAAAATTCAAATTTAACTTTTTGATTATCAATTAATTACATATATAGCAGTATTTTATAATTGATGAAAAATGTTGCAGGAAGCTGTGAACGTTTCACTTGGAAATCTGCTTACGTATCCATTCGTGAGAGAAGGATTGGTGAAGAAAACATTGGCATTGAAGGGAGGTTACTATGATTTCGTGAAGGGTGGATTTGAGCTGTGGGGACTTGAGTTCGGTCTTTCTCCTCCTCTTTCCGTATGAACTTAATTCAATTACCATTTGGCCCTCACAATTTCCTTCCTTTTTTTTTTTTTCGCCTGACAGTACTTTTGCTTCGCAAAATCAACTGTGTGTATGTTGTTTGTATGTATTATGTATGTATGAATCAAATATGGAAGAGCACTCGTTGTTATATTTCTGAAATAAATAAAATGGAGACTACTTTTTGTATAAATACGTTTG</genome_strand>
        <mrna_strand>CCGTTA-AGATGA..................................................................................................TACAAACCCAGCCTTATATGGTGAACTAGCCTTGGGCCAGAGCCCTAAG....................................................................................TTCATGGTTTTCGCGTGCTCTGACTCACGAGTGTGCCCATCCCATGTCCTCAACTTCCAACCTGGTGAGGCATTCATGGTTCGTAACATTGCCAACATGGTCCCTGCTTATGACAAG.....................................................................................GTCAGGTACTCTGGAGTAGGAGCAGCCATTGAATACGCGGTTCTTCATCTTAAGGTGGAGAACATCGTTGTCATTGGCCACAGTGCTTGTGGAGGTATCAAAGGTCTCATGTCACTACCTGAAGATGGTAGTGAATCAAC.............................................................................TGCCTTTATTGAGGATTGGGTGAAAATTTGTTTACCTGCCAAGGCAAAGGTTCTGGCCGATCACGGAGGGAAAGAATTTGGACATCAATGCACAGCTTGTGAGAAG................................................................................GAAGCTGTGAACGTTTCACTTGGAAATCTGCTTACGTATCCATTCGTGAGAGAAGGATTGGTGAAGAAAACATTGGCATTGAAGGGAGGATACTATGATTTCGTGAAGGGTGGATTTGAGCTGTGGGGACTTGAGTTCGGTCTTTCTCCTCCTCTTTCCGTATGAACTTAATTCAATTACCATTTGGCCCTCACAATTTCCTTCC--TTTTTTTTTTTCGCCTGACAGTATTTTTGCTTCGCAAAATCAAC--TGTGTATGTTGTTTGTATGTATTATGTATGTATGAATCAAATATGGAAGAGCACTCGTTGTTATATTTCTGAAATAAATAAAATGGAGACTACTTTTGGTATAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0236E02-u8qcS/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E691065" ref_strand="+" ref_description="SGN-E691065 [LH_Ea05C07]">
      <seq>tgaaatatgatacaaacccagccttatatggtgaactagcaaagggccagagccctaagttcatggttttcgcgtgctctgactcacgagtgtgcccatcccatgtcctcaacttccaacctggtgaggcattcatggttcgtaacattgccaacatggtccctgcttatgacaaggtcaggtactctggagtaggagcagccattgaatacgcggttcttcatcttaaggtggagaacatcgttgtcattggccacagtgcttgtggaggtatcaaaggtctcatgtcactacctgaagatggtagtgaatcaactgcctttattgaggattgggtgaaaatttgtttacctgccaaggcaaaggttctggccgatcacggagggaaagaatttggacatcaatgcacagcttgtgagaaggaagctgtgaacgtttcacttggaaatctgcttacgtatccattcgtgagagaaggattggtgaagaaaacattggcattgaagggaggatactatgatttcgtgaagggtggatttgagctgtggggacttgagttcggtctttctcctcctctttccgtatgaacttaattcaattaccatttggccctcacaatttccttcctttttttttttcgcctgacagtatttttgcttcgcaaaatcaactgtgtatgttgtttgtatgtattatgtatgtatgaatcaaatatggaagagcactcgttgttatatttctgaaataaataaaatggagactacttttggtataaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0236E02-u8qcS/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0236E02.1" temp_strand="+" temp_description="C02HBa0236E02.1  AC215430.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0236E02 sequenced_by:kribb upload_account_name:korea">
        <position start="16757" stop="18453"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="16948" g_stop="16957" g_length="10"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="10" r_length="10" r_score="0.900"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="16958" i_stop="17055" i_length="98">
            <donor d_prob="0.999" d_score="0.00"/>
            <acceptor a_prob="0.999" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="17056" g_stop="17104" g_length="49"/>
          <reference_exon_boundary r_type="cDNA" r_start="11" r_stop="59" r_length="49" r_score="0.959"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="17105" i_stop="17188" i_length="84">
            <donor d_prob="1.000" d_score="0.96"/>
            <acceptor a_prob="0.961" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="17189" g_stop="17305" g_length="117"/>
          <reference_exon_boundary r_type="cDNA" r_start="60" r_stop="176" r_length="117" r_score="0.983"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="17306" i_stop="17390" i_length="85">
            <donor d_prob="0.999" d_score="0.98"/>
            <acceptor a_prob="0.979" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="17391" g_stop="17530" g_length="140"/>
          <reference_exon_boundary r_type="cDNA" r_start="177" r_stop="316" r_length="140" r_score="0.993"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="17531" i_stop="17607" i_length="77">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.948" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="17608" g_stop="17713" g_length="106"/>
          <reference_exon_boundary r_type="cDNA" r_start="317" r_stop="422" r_length="106" r_score="0.981"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="17714" i_stop="17793" i_length="80">
            <donor d_prob="1.000" d_score="0.98"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="17794" g_stop="18158" g_length="365"/>
          <reference_exon_boundary r_type="cDNA" r_start="423" r_stop="783" r_length="361" r_score="0.964"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0236E02.1" gen_strand="+" ref_id="SGN-E691065" ref_strand="+">
        <total_alignment_score>0.975</total_alignment_score>
        <cumulative_length_of_scored_exons>787</cumulative_length_of_scored_exons>
        <coverage percentage="1.005" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0236E02.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E691065" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="16948" e_stop="16957"/>
          <exon e_start="17056" e_stop="17104"/>
          <exon e_start="17189" e_stop="17305"/>
          <exon e_start="17391" e_stop="17530"/>
          <exon e_start="17608" e_stop="17713"/>
          <exon e_start="17794" e_stop="18158"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGAAATATGAGTAAGCAAATTCATTCAAATTAAAATTTCTGCATATTTGATGTTGTAACATTATTAGTGTCTGATAATTTTTCCTGTTTTCTATTTATGTACCAACAGCACAAACCCAGCCTTATATGGTGAGCTAGCAAAGGGCCAGAGCCCTAAGGTACAAATTCCTTGTTAATTTGTTGTCTAATTTTATGATTTGTACGGTTTCTGATGAGTTCTATTGTCCTAAATGTGTAAACAGTTCATGGTTTTCGCGTGCTCTGACTCACGAGTCTGCCCATCCCATGTCCTCAACTTCCAACCTGGTGAGGCATTCATGGTTCGTAACATCGCCAACATGGTCCCTGCTTATGACAAGGTCAGTTACAAATCGATCAACTAGTCGATTATTTCGCTCTGGAATTGTGTTTTTTAAAAATAAAGATGGAATTGAATTTTTACAGGTCAGGTACTCTGGAGTAGGAGCAGCCATTGAATACGCCGTTCTTCATCTTAAGGTGGAGAACATCGTTGTCATTGGCCACAGTGCTTGTGGAGGTATCAAAGGTCTCATGTCACTACCTGAAGATGGTAGTGAATCAACGTACGTCACTCTATAAATCTATTCATTCAAAACACTTATCCTTAACAGATGATTGATTAATAATCTAATATACGCAGTGCCTTTATTGAGGATTGGGTAAAAATTTGTTTACCTGCCAAGGCAAAGGTTCTGGCCGATCACGGAGGGAAAGAATTTGCACATCAATGCACAGCTTGTGAGAAGGTAAAATTCAAATTTAACTTTTTGATTATCAATTAATTACATATATAGCAGTATTTTATAATTGATGAAAAATGTTGCAGGAAGCTGTGAACGTTTCACTTGGAAATCTGCTTACGTATCCATTCGTGAGAGAAGGATTGGTGAAGAAAACATTGGCATTGAAGGGAGGTTACTATGATTTCGTGAAGGGTGGATTTGAGCTGTGGGGACTTGAGTTCGGTCTTTCTCCTCCTCTTTCCGTATGAACTTAATTCAATTACCATTTGGCCCTCACAATTTCCTTCCTTTTTTTTTTTTTCGCCTGACAGTACTTTTGCTTCGCAAAATCAACTGTGTGTATGTTGTTTGTATGTATTATGTATGTATGAATCAAATATGGAAGAGCACTCGTTGTTATATTTCTGAAATAAATAAAATGGAGACTACTTTTTGTATAAATACGTTT</genome_strand>
        <mrna_strand>TGAAATATGA..................................................................................................TACAAACCCAGCCTTATATGGTGAACTAGCAAAGGGCCAGAGCCCTAAG....................................................................................TTCATGGTTTTCGCGTGCTCTGACTCACGAGTGTGCCCATCCCATGTCCTCAACTTCCAACCTGGTGAGGCATTCATGGTTCGTAACATTGCCAACATGGTCCCTGCTTATGACAAG.....................................................................................GTCAGGTACTCTGGAGTAGGAGCAGCCATTGAATACGCGGTTCTTCATCTTAAGGTGGAGAACATCGTTGTCATTGGCCACAGTGCTTGTGGAGGTATCAAAGGTCTCATGTCACTACCTGAAGATGGTAGTGAATCAAC.............................................................................TGCCTTTATTGAGGATTGGGTGAAAATTTGTTTACCTGCCAAGGCAAAGGTTCTGGCCGATCACGGAGGGAAAGAATTTGGACATCAATGCACAGCTTGTGAGAAG................................................................................GAAGCTGTGAACGTTTCACTTGGAAATCTGCTTACGTATCCATTCGTGAGAGAAGGATTGGTGAAGAAAACATTGGCATTGAAGGGAGGATACTATGATTTCGTGAAGGGTGGATTTGAGCTGTGGGGACTTGAGTTCGGTCTTTCTCCTCCTCTTTCCGTATGAACTTAATTCAATTACCATTTGGCCCTCACAATTTCCTTCC--TTTTTTTTTTTCGCCTGACAGTATTTTTGCTTCGCAAAATCAAC--TGTGTATGTTGTTTGTATGTATTATGTATGTATGAATCAAATATGGAAGAGCACTCGTTGTTATATTTCTGAAATAAATAAAATGGAGACTACTTTTGGTATAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0236E02-u8qcS/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E295882" ref_strand="+" ref_description="SGN-E295882 [cLET-27-M3]">
      <seq>agaaatatgacacaaacccagccttatatggtgagctagcaaagggccagagccctaagttcatggttttcgcgtgctctgactcacgagtctgcccatcccatgtcctcaacttccaacctggtgaggcattcatggttcgtaacatcgccaacatggtccctgcttatgacaaggtcaggtactctggagtaggagcagccattgaatacgccgttcttcatcttaaggtggagaacatcgttgtcattggccacagtgcttgtggaggtatcaaaggtctcatgtcactacctgaagatggtagtgaatcaactgcctttattgaggattgggtaaaaatttgtttacctgccaaggcaaaggttctggccgatcacggagggaaagaatttgcacatcaatgcacagcttgtgagaaggaagctgtgaacgtttcacttggaaatctgcttacgtatccattcgtgagagaaggattggtgaagaaaacattggcattgaagggaggttactatgatttcgtgaagggtggatttgagctgtggggacttgagttcggtctttctcctcctctttccgtatgaacttaattcaattaccatttggccctcacaatttcccttctttttttttttttt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0236E02-u8qcS/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0236E02.1" temp_strand="+" temp_description="C02HBa0236E02.1  AC215430.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0236E02 sequenced_by:kribb upload_account_name:korea">
        <position start="16751" stop="18311"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="16948" g_stop="16957" g_length="10"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="10" r_length="10" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="16958" i_stop="17055" i_length="98">
            <donor d_prob="0.999" d_score="0.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="17056" g_stop="17104" g_length="49"/>
          <reference_exon_boundary r_type="cDNA" r_start="11" r_stop="59" r_length="49" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="17105" i_stop="17188" i_length="84">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.961" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="17189" g_stop="17305" g_length="117"/>
          <reference_exon_boundary r_type="cDNA" r_start="60" r_stop="176" r_length="117" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="17306" i_stop="17390" i_length="85">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.979" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="17391" g_stop="17530" g_length="140"/>
          <reference_exon_boundary r_type="cDNA" r_start="177" r_stop="316" r_length="140" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="17531" i_stop="17607" i_length="77">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.948" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="17608" g_stop="17713" g_length="106"/>
          <reference_exon_boundary r_type="cDNA" r_start="317" r_stop="422" r_length="106" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="17714" i_stop="17793" i_length="80">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="17794" g_stop="18012" g_length="219"/>
          <reference_exon_boundary r_type="cDNA" r_start="423" r_stop="641" r_length="219" r_score="0.986"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0236E02.1" gen_strand="+" ref_id="SGN-E295882" ref_strand="+">
        <total_alignment_score>0.995</total_alignment_score>
        <cumulative_length_of_scored_exons>641</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0236E02.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E295882" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="16948" e_stop="16957"/>
          <exon e_start="17056" e_stop="17104"/>
          <exon e_start="17189" e_stop="17305"/>
          <exon e_start="17391" e_stop="17530"/>
          <exon e_start="17608" e_stop="17713"/>
          <exon e_start="17794" e_stop="18012"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGAAATATGAGTAAGCAAATTCATTCAAATTAAAATTTCTGCATATTTGATGTTGTAACATTATTAGTGTCTGATAATTTTTCCTGTTTTCTATTTATGTACCAACAGCACAAACCCAGCCTTATATGGTGAGCTAGCAAAGGGCCAGAGCCCTAAGGTACAAATTCCTTGTTAATTTGTTGTCTAATTTTATGATTTGTACGGTTTCTGATGAGTTCTATTGTCCTAAATGTGTAAACAGTTCATGGTTTTCGCGTGCTCTGACTCACGAGTCTGCCCATCCCATGTCCTCAACTTCCAACCTGGTGAGGCATTCATGGTTCGTAACATCGCCAACATGGTCCCTGCTTATGACAAGGTCAGTTACAAATCGATCAACTAGTCGATTATTTCGCTCTGGAATTGTGTTTTTTAAAAATAAAGATGGAATTGAATTTTTACAGGTCAGGTACTCTGGAGTAGGAGCAGCCATTGAATACGCCGTTCTTCATCTTAAGGTGGAGAACATCGTTGTCATTGGCCACAGTGCTTGTGGAGGTATCAAAGGTCTCATGTCACTACCTGAAGATGGTAGTGAATCAACGTACGTCACTCTATAAATCTATTCATTCAAAACACTTATCCTTAACAGATGATTGATTAATAATCTAATATACGCAGTGCCTTTATTGAGGATTGGGTAAAAATTTGTTTACCTGCCAAGGCAAAGGTTCTGGCCGATCACGGAGGGAAAGAATTTGCACATCAATGCACAGCTTGTGAGAAGGTAAAATTCAAATTTAACTTTTTGATTATCAATTAATTACATATATAGCAGTATTTTATAATTGATGAAAAATGTTGCAGGAAGCTGTGAACGTTTCACTTGGAAATCTGCTTACGTATCCATTCGTGAGAGAAGGATTGGTGAAGAAAACATTGGCATTGAAGGGAGGTTACTATGATTTCGTGAAGGGTGGATTTGAGCTGTGGGGACTTGAGTTCGGTCTTTCTCCTCCTCTTTCCGTATGAACTTAATTCAATTACCATTTGGCCCTCACAATTTCCTTCCTTTTTTTTTTTTTC</genome_strand>
        <mrna_strand>AGAAATATGA..................................................................................................CACAAACCCAGCCTTATATGGTGAGCTAGCAAAGGGCCAGAGCCCTAAG....................................................................................TTCATGGTTTTCGCGTGCTCTGACTCACGAGTCTGCCCATCCCATGTCCTCAACTTCCAACCTGGTGAGGCATTCATGGTTCGTAACATCGCCAACATGGTCCCTGCTTATGACAAG.....................................................................................GTCAGGTACTCTGGAGTAGGAGCAGCCATTGAATACGCCGTTCTTCATCTTAAGGTGGAGAACATCGTTGTCATTGGCCACAGTGCTTGTGGAGGTATCAAAGGTCTCATGTCACTACCTGAAGATGGTAGTGAATCAAC.............................................................................TGCCTTTATTGAGGATTGGGTAAAAATTTGTTTACCTGCCAAGGCAAAGGTTCTGGCCGATCACGGAGGGAAAGAATTTGCACATCAATGCACAGCTTGTGAGAAG................................................................................GAAGCTGTGAACGTTTCACTTGGAAATCTGCTTACGTATCCATTCGTGAGAGAAGGATTGGTGAAGAAAACATTGGCATTGAAGGGAGGTTACTATGATTTCGTGAAGGGTGGATTTGAGCTGTGGGGACTTGAGTTCGGTCTTTCTCCTCCTCTTTCCGTATGAACTTAATTCAATTACCATTTGGCCCTCACAATTTCCCTTCTTTTTTTTTTTTTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0236E02-u8qcS/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E694906" ref_strand="+" ref_description="SGN-E694906 [LH_Ea05C08](-)">
      <seq>gaaatatgatacaaacccagccttatatggtgaactagcaaagggccagagccctaagttcatggttttcgcgtgctctgactcacgagtgtgcccatcccatgtcctcaacttccaacctggtgaggcattcatggttcgtaacattgccaacatggtccctgcttatgacaaggtcaggtactctggagtaggagcagccattgaatacgcggttcttcatcttaaggtggagaacatcgttgtcattggccacagtgcttgtggaggtatcaaaggtctcatgtcactacctgaagatggtagtgaatcaactgcctttattgaggattgggtgaaaatttgtttacctgccaaggcaaaggttctggccgatcacggagggaaagaatttggacatcaatgcacagcttgtgagaaggaagctgtgaacgtttcacttggaaatctgcttacgtatccattcgtgagagaaggattggtgaagaaaacattggcattgaagggaggatactatgatttcgtgaagggtggatttgagctgtggggacttgagttcggtctttctcctcctctttccgtatgaacttaattcaattaccatttggccctcacaatttccttcctttttttttttcgcctgacagtatttttgcttcgcaaaatcaactgtgtatgttgtttgtatgtattatgtaggtatgaatcaaatatggaagagcacctcgttgttatatatgggaaataaataaaatggagactacttttggtataaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0236E02-u8qcS/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0236E02.1" temp_strand="+" temp_description="C02HBa0236E02.1  AC215430.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0236E02 sequenced_by:kribb upload_account_name:korea">
        <position start="16757" stop="18453"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="16949" g_stop="16957" g_length="9"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="9" r_length="9" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="16958" i_stop="17055" i_length="98">
            <donor d_prob="0.999" d_score="0.00"/>
            <acceptor a_prob="0.999" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="17056" g_stop="17104" g_length="49"/>
          <reference_exon_boundary r_type="cDNA" r_start="10" r_stop="58" r_length="49" r_score="0.959"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="17105" i_stop="17188" i_length="84">
            <donor d_prob="1.000" d_score="0.96"/>
            <acceptor a_prob="0.961" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="17189" g_stop="17305" g_length="117"/>
          <reference_exon_boundary r_type="cDNA" r_start="59" r_stop="175" r_length="117" r_score="0.983"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="17306" i_stop="17390" i_length="85">
            <donor d_prob="0.999" d_score="0.98"/>
            <acceptor a_prob="0.979" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="17391" g_stop="17530" g_length="140"/>
          <reference_exon_boundary r_type="cDNA" r_start="176" r_stop="315" r_length="140" r_score="0.993"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="17531" i_stop="17607" i_length="77">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.948" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="17608" g_stop="17713" g_length="106"/>
          <reference_exon_boundary r_type="cDNA" r_start="316" r_stop="421" r_length="106" r_score="0.981"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="17714" i_stop="17793" i_length="80">
            <donor d_prob="1.000" d_score="0.98"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="17794" g_stop="18150" g_length="357"/>
          <reference_exon_boundary r_type="cDNA" r_start="422" r_stop="775" r_length="354" r_score="0.964"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="776" polyA_stop="789"/>
      <MATCH_line gen_id="C02HBa0236E02.1" gen_strand="+" ref_id="SGN-E694906" ref_strand="+">
        <total_alignment_score>0.975</total_alignment_score>
        <cumulative_length_of_scored_exons>778</cumulative_length_of_scored_exons>
        <coverage percentage="0.986" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0236E02.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E694906" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="16949" e_stop="16957"/>
          <exon e_start="17056" e_stop="17104"/>
          <exon e_start="17189" e_stop="17305"/>
          <exon e_start="17391" e_stop="17530"/>
          <exon e_start="17608" e_stop="17713"/>
          <exon e_start="17794" e_stop="18150"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAAATATGAGTAAGCAAATTCATTCAAATTAAAATTTCTGCATATTTGATGTTGTAACATTATTAGTGTCTGATAATTTTTCCTGTTTTCTATTTATGTACCAACAGCACAAACCCAGCCTTATATGGTGAGCTAGCAAAGGGCCAGAGCCCTAAGGTACAAATTCCTTGTTAATTTGTTGTCTAATTTTATGATTTGTACGGTTTCTGATGAGTTCTATTGTCCTAAATGTGTAAACAGTTCATGGTTTTCGCGTGCTCTGACTCACGAGTCTGCCCATCCCATGTCCTCAACTTCCAACCTGGTGAGGCATTCATGGTTCGTAACATCGCCAACATGGTCCCTGCTTATGACAAGGTCAGTTACAAATCGATCAACTAGTCGATTATTTCGCTCTGGAATTGTGTTTTTTAAAAATAAAGATGGAATTGAATTTTTACAGGTCAGGTACTCTGGAGTAGGAGCAGCCATTGAATACGCCGTTCTTCATCTTAAGGTGGAGAACATCGTTGTCATTGGCCACAGTGCTTGTGGAGGTATCAAAGGTCTCATGTCACTACCTGAAGATGGTAGTGAATCAACGTACGTCACTCTATAAATCTATTCATTCAAAACACTTATCCTTAACAGATGATTGATTAATAATCTAATATACGCAGTGCCTTTATTGAGGATTGGGTAAAAATTTGTTTACCTGCCAAGGCAAAGGTTCTGGCCGATCACGGAGGGAAAGAATTTGCACATCAATGCACAGCTTGTGAGAAGGTAAAATTCAAATTTAACTTTTTGATTATCAATTAATTACATATATAGCAGTATTTTATAATTGATGAAAAATGTTGCAGGAAGCTGTGAACGTTTCACTTGGAAATCTGCTTACGTATCCATTCGTGAGAGAAGGATTGGTGAAGAAAACATTGGCATTGAAGGGAGGTTACTATGATTTCGTGAAGGGTGGATTTGAGCTGTGGGGACTTGAGTTCGGTCTTTCTCCTCCTCTTTCCGTATGAACTTAATTCAATTACCATTTGGCCCTCACAATTTCCTTCCTTTTTTTTTTTTTCGCCTGACAGTACTTTTGCTTCGCAAAATCAACTGTGTGTATGTTGTTTGTATGTATTATGTATGTATGAATCAAATATGGAAGAGCA-CTCGTTGTTATATTTCTGAAATAAATAAAATGGAGACTACTTTTTGTATAA</genome_strand>
        <mrna_strand>GAAATATGA..................................................................................................TACAAACCCAGCCTTATATGGTGAACTAGCAAAGGGCCAGAGCCCTAAG....................................................................................TTCATGGTTTTCGCGTGCTCTGACTCACGAGTGTGCCCATCCCATGTCCTCAACTTCCAACCTGGTGAGGCATTCATGGTTCGTAACATTGCCAACATGGTCCCTGCTTATGACAAG.....................................................................................GTCAGGTACTCTGGAGTAGGAGCAGCCATTGAATACGCGGTTCTTCATCTTAAGGTGGAGAACATCGTTGTCATTGGCCACAGTGCTTGTGGAGGTATCAAAGGTCTCATGTCACTACCTGAAGATGGTAGTGAATCAAC.............................................................................TGCCTTTATTGAGGATTGGGTGAAAATTTGTTTACCTGCCAAGGCAAAGGTTCTGGCCGATCACGGAGGGAAAGAATTTGGACATCAATGCACAGCTTGTGAGAAG................................................................................GAAGCTGTGAACGTTTCACTTGGAAATCTGCTTACGTATCCATTCGTGAGAGAAGGATTGGTGAAGAAAACATTGGCATTGAAGGGAGGATACTATGATTTCGTGAAGGGTGGATTTGAGCTGTGGGGACTTGAGTTCGGTCTTTCTCCTCCTCTTTCCGTATGAACTTAATTCAATTACCATTTGGCCCTCACAATTTCCTTCC--TTTTTTTTTTTCGCCTGACAGTATTTTTGCTTCGCAAAATCAAC--TGTGTATGTTGTTTGTATGTATTATGTAGGTATGAATCAAATATGGAAGAGCACCTCGTTGTTATATATGGGAAATAAATAAAATGGAGACTACTTTTGGTATAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0236E02-u8qcS/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E289687" ref_strand="+" ref_description="SGN-E289687 [cLET-4-E23]">
      <seq>aaacccagccttatatggtgagctagcaaagggccagagccctaagttcatggttttcgcgtgctctgactcacgagtctgcccatcccatgtcctcaacttccaacctggtgaggcattcatggttcgtaacatcgccaacatggtccctgcttatgacaaggtcaggtactctggagtaggagcagccattgaatacgccgttcttcatcttaaggtggagaacatcgttgtcattggccacagtgcttgtggaggtatcaaaggtctcatgtcactacctgaagatggtagtgaatcaactgcctttattgaggattgggtaaaaatttgtttacctgccaaggcaaaggttctggccgatcaccgagggaaagaatttgcacatcaatgcacagc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0236E02-u8qcS/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0236E02.1" temp_strand="+" temp_description="C02HBa0236E02.1  AC215430.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0236E02 sequenced_by:kribb upload_account_name:korea">
        <position start="16759" stop="18003"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="17059" g_stop="17104" g_length="46"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="46" r_length="46" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="17105" i_stop="17188" i_length="84">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.961" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="17189" g_stop="17305" g_length="117"/>
          <reference_exon_boundary r_type="cDNA" r_start="47" r_stop="163" r_length="117" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="17306" i_stop="17390" i_length="85">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.979" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="17391" g_stop="17530" g_length="140"/>
          <reference_exon_boundary r_type="cDNA" r_start="164" r_stop="303" r_length="140" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="17531" i_stop="17607" i_length="77">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.948" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="17608" g_stop="17703" g_length="96"/>
          <reference_exon_boundary r_type="cDNA" r_start="304" r_stop="399" r_length="96" r_score="0.990"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0236E02.1" gen_strand="+" ref_id="SGN-E289687" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>399</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0236E02.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E289687" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="17059" e_stop="17104"/>
          <exon e_start="17189" e_stop="17305"/>
          <exon e_start="17391" e_stop="17530"/>
          <exon e_start="17608" e_stop="17703"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAACCCAGCCTTATATGGTGAGCTAGCAAAGGGCCAGAGCCCTAAGGTACAAATTCCTTGTTAATTTGTTGTCTAATTTTATGATTTGTACGGTTTCTGATGAGTTCTATTGTCCTAAATGTGTAAACAGTTCATGGTTTTCGCGTGCTCTGACTCACGAGTCTGCCCATCCCATGTCCTCAACTTCCAACCTGGTGAGGCATTCATGGTTCGTAACATCGCCAACATGGTCCCTGCTTATGACAAGGTCAGTTACAAATCGATCAACTAGTCGATTATTTCGCTCTGGAATTGTGTTTTTTAAAAATAAAGATGGAATTGAATTTTTACAGGTCAGGTACTCTGGAGTAGGAGCAGCCATTGAATACGCCGTTCTTCATCTTAAGGTGGAGAACATCGTTGTCATTGGCCACAGTGCTTGTGGAGGTATCAAAGGTCTCATGTCACTACCTGAAGATGGTAGTGAATCAACGTACGTCACTCTATAAATCTATTCATTCAAAACACTTATCCTTAACAGATGATTGATTAATAATCTAATATACGCAGTGCCTTTATTGAGGATTGGGTAAAAATTTGTTTACCTGCCAAGGCAAAGGTTCTGGCCGATCACGGAGGGAAAGAATTTGCACATCAATGCACAGC</genome_strand>
        <mrna_strand>AAACCCAGCCTTATATGGTGAGCTAGCAAAGGGCCAGAGCCCTAAG....................................................................................TTCATGGTTTTCGCGTGCTCTGACTCACGAGTCTGCCCATCCCATGTCCTCAACTTCCAACCTGGTGAGGCATTCATGGTTCGTAACATCGCCAACATGGTCCCTGCTTATGACAAG.....................................................................................GTCAGGTACTCTGGAGTAGGAGCAGCCATTGAATACGCCGTTCTTCATCTTAAGGTGGAGAACATCGTTGTCATTGGCCACAGTGCTTGTGGAGGTATCAAAGGTCTCATGTCACTACCTGAAGATGGTAGTGAATCAAC.............................................................................TGCCTTTATTGAGGATTGGGTAAAAATTTGTTTACCTGCCAAGGCAAAGGTTCTGGCCGATCACCGAGGGAAAGAATTTGCACATCAATGCACAGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0236E02-u8qcS/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E732335" ref_strand="+" ref_description="SGN-E732335 [LB01DF01]">
      <seq>ccgctctaagttcatggttttcgcgtgctctgactcacgagtctgcccatcccatgtcctcaacttccaacctggtgaggcattcatggttcgtaacatcgccaacatggtccctgcttatgacaaggtcaggtactctggagtaggagcagccattgaatacgccgttcttcatcttaaggtggagaacatcgttgtcattggccacagtgcttgtggaggtatcaaaggtctcatgtcactacctgaagatggtagtgaatcaactgcctttattgaggattgggtaaaaatttgtttacctgccaaggcaaaggttctggccgatcacggagggaaagaatttgcacatcaatgcacagcttgtgagaaggaagctgtgaacgtttcacttggaaatctgcttacgtatccattcgtgagagaaggattggtgaagaaaacattggcattgaagggaggttactatgatttcgtgaagggtggatttgagctgtggggacttgagttcggtctttctcctcctctttccgtaaaagatgtggccagtatactgcactggaagctcatgtagagacagagagatcgtcaagcaacaagaggattcccagatttaatctgttattcttgctcatgtagaccaaaaattggccataataatctacaaacactcttttcggctaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0236E02-u8qcS/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0236E02.1" temp_strand="+" temp_description="C02HBa0236E02.1  AC215430.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0236E02 sequenced_by:kribb upload_account_name:korea">
        <position start="16887" stop="18629"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="17095" g_stop="17104" g_length="10"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="10" r_length="10" r_score="0.700"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="17105" i_stop="17188" i_length="84">
            <donor d_prob="1.000" d_score="0.00"/>
            <acceptor a_prob="0.961" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="17189" g_stop="17305" g_length="117"/>
          <reference_exon_boundary r_type="cDNA" r_start="11" r_stop="127" r_length="117" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="17306" i_stop="17390" i_length="85">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.979" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="17391" g_stop="17530" g_length="140"/>
          <reference_exon_boundary r_type="cDNA" r_start="128" r_stop="267" r_length="140" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="17531" i_stop="17607" i_length="77">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.948" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="17608" g_stop="17713" g_length="106"/>
          <reference_exon_boundary r_type="cDNA" r_start="268" r_stop="373" r_length="106" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="17714" i_stop="17793" i_length="80">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="17794" g_stop="17952" g_length="159"/>
          <reference_exon_boundary r_type="cDNA" r_start="374" r_stop="532" r_length="159" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="17953" i_stop="18175" i_length="223">
            <donor d_prob="0.934" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="18176" g_stop="18328" g_length="153"/>
          <reference_exon_boundary r_type="cDNA" r_start="533" r_stop="685" r_length="153" r_score="0.993"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0236E02.1" gen_strand="+" ref_id="SGN-E732335" ref_strand="+">
        <total_alignment_score>0.999</total_alignment_score>
        <cumulative_length_of_scored_exons>685</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0236E02.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E732335" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="17095" e_stop="17104"/>
          <exon e_start="17189" e_stop="17305"/>
          <exon e_start="17391" e_stop="17530"/>
          <exon e_start="17608" e_stop="17713"/>
          <exon e_start="17794" e_stop="17952"/>
          <exon e_start="18176" e_stop="18328"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAGCCCTAAGGTACAAATTCCTTGTTAATTTGTTGTCTAATTTTATGATTTGTACGGTTTCTGATGAGTTCTATTGTCCTAAATGTGTAAACAGTTCATGGTTTTCGCGTGCTCTGACTCACGAGTCTGCCCATCCCATGTCCTCAACTTCCAACCTGGTGAGGCATTCATGGTTCGTAACATCGCCAACATGGTCCCTGCTTATGACAAGGTCAGTTACAAATCGATCAACTAGTCGATTATTTCGCTCTGGAATTGTGTTTTTTAAAAATAAAGATGGAATTGAATTTTTACAGGTCAGGTACTCTGGAGTAGGAGCAGCCATTGAATACGCCGTTCTTCATCTTAAGGTGGAGAACATCGTTGTCATTGGCCACAGTGCTTGTGGAGGTATCAAAGGTCTCATGTCACTACCTGAAGATGGTAGTGAATCAACGTACGTCACTCTATAAATCTATTCATTCAAAACACTTATCCTTAACAGATGATTGATTAATAATCTAATATACGCAGTGCCTTTATTGAGGATTGGGTAAAAATTTGTTTACCTGCCAAGGCAAAGGTTCTGGCCGATCACGGAGGGAAAGAATTTGCACATCAATGCACAGCTTGTGAGAAGGTAAAATTCAAATTTAACTTTTTGATTATCAATTAATTACATATATAGCAGTATTTTATAATTGATGAAAAATGTTGCAGGAAGCTGTGAACGTTTCACTTGGAAATCTGCTTACGTATCCATTCGTGAGAGAAGGATTGGTGAAGAAAACATTGGCATTGAAGGGAGGTTACTATGATTTCGTGAAGGGTGGATTTGAGCTGTGGGGACTTGAGTTCGGTCTTTCTCCTCCTCTTTCCGTATGAACTTAATTCAATTACCATTTGGCCCTCACAATTTCCTTCCTTTTTTTTTTTTTCGCCTGACAGTACTTTTGCTTCGCAAAATCAACTGTGTGTATGTTGTTTGTATGTATTATGTATGTATGAATCAAATATGGAAGAGCACTCGTTGTTATATTTCTGAAATAAATAAAATGGAGACTACTTTTTGTATAAATACGTTTGTGGTGGGCTTTGGTAGGTAAAAGATGTGGCCAGTATACTGCACTGGAAGCTCATGTAGAGACAGAGAGATCGTCAAGCAACAAGAGGATTCCCAGATTTAATCTGTTATTCTTGCTCATGTAGACCAAAAATTGGCCATAATAATCTACAAACACTCTTTTCGGCTACA</genome_strand>
        <mrna_strand>CCGCTCTAAG....................................................................................TTCATGGTTTTCGCGTGCTCTGACTCACGAGTCTGCCCATCCCATGTCCTCAACTTCCAACCTGGTGAGGCATTCATGGTTCGTAACATCGCCAACATGGTCCCTGCTTATGACAAG.....................................................................................GTCAGGTACTCTGGAGTAGGAGCAGCCATTGAATACGCCGTTCTTCATCTTAAGGTGGAGAACATCGTTGTCATTGGCCACAGTGCTTGTGGAGGTATCAAAGGTCTCATGTCACTACCTGAAGATGGTAGTGAATCAAC.............................................................................TGCCTTTATTGAGGATTGGGTAAAAATTTGTTTACCTGCCAAGGCAAAGGTTCTGGCCGATCACGGAGGGAAAGAATTTGCACATCAATGCACAGCTTGTGAGAAG................................................................................GAAGCTGTGAACGTTTCACTTGGAAATCTGCTTACGTATCCATTCGTGAGAGAAGGATTGGTGAAGAAAACATTGGCATTGAAGGGAGGTTACTATGATTTCGTGAAGGGTGGATTTGAGCTGTGGGGACTTGAGTTCGGTCTTTCTCCTCCTCTTTCC...............................................................................................................................................................................................................................GTAAAAGATGTGGCCAGTATACTGCACTGGAAGCTCATGTAGAGACAGAGAGATCGTCAAGCAACAAGAGGATTCCCAGATTTAATCTGTTATTCTTGCTCATGTAGACCAAAAATTGGCCATAATAATCTACAAACACTCTTTTCGGCTAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0236E02-u8qcS/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E372118" ref_strand="+" ref_description="SGN-E372118 [TUS-30-B12](-)">
      <seq>atggttttcgcgtgctctgactcacgagtctgcccatcccatgtcctcaacttccaacctggtgaggcattcatggttcgtaacatcgccaacatggtccctgcttatgacaaggtcaggtactctggagtaggagcagccattgaatacgccgttcttcatcttaaggtggagaacatcgttgtcattggccacagtgcttgtggaggtatcaaaggtctcatgtcactacctgaagatggtagtgaatcaactgcctttattgaggattgggtaaaaatttgtttacctgccaaggcaaaggttctggccgatcacggagggaaagaatttgcacatcaatgcacagcttgtgagaaggaagctgtgaacgtttcacttggaaatctgcttacgtatccattcgtgagagaaggattggtgaagaaaacattggcattgaagggaggttactatgatttcgtgaagggtggatttgagctgtggggacttgagttcggtctttctcctcctctttccgtatgaacttaattcaattaccatttggccctcacaatttccttcctttttttttttttcgcctgacagtacttatgcttcgcaaaatcaactgtgtgtatgttgtttgtatgtattatgtatgtatgaatcaaatatggaagagcactcgttgttatatttctgaaataaataaaatggagtctacttctgatataaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0236E02-u8qcS/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0236E02.1" temp_strand="+" temp_description="C02HBa0236E02.1  AC215430.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0236E02 sequenced_by:kribb upload_account_name:korea">
        <position start="16892" stop="18453"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="17192" g_stop="17305" g_length="114"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="114" r_length="114" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="17306" i_stop="17390" i_length="85">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.979" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="17391" g_stop="17530" g_length="140"/>
          <reference_exon_boundary r_type="cDNA" r_start="115" r_stop="254" r_length="140" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="17531" i_stop="17607" i_length="77">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.948" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="17608" g_stop="17713" g_length="106"/>
          <reference_exon_boundary r_type="cDNA" r_start="255" r_stop="360" r_length="106" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="17714" i_stop="17793" i_length="80">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="17794" g_stop="18157" g_length="364"/>
          <reference_exon_boundary r_type="cDNA" r_start="361" r_stop="724" r_length="364" r_score="0.973"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0236E02.1" gen_strand="+" ref_id="SGN-E372118" ref_strand="+">
        <total_alignment_score>0.986</total_alignment_score>
        <cumulative_length_of_scored_exons>724</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0236E02.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E372118" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="17192" e_stop="17305"/>
          <exon e_start="17391" e_stop="17530"/>
          <exon e_start="17608" e_stop="17713"/>
          <exon e_start="17794" e_stop="18157"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATGGTTTTCGCGTGCTCTGACTCACGAGTCTGCCCATCCCATGTCCTCAACTTCCAACCTGGTGAGGCATTCATGGTTCGTAACATCGCCAACATGGTCCCTGCTTATGACAAGGTCAGTTACAAATCGATCAACTAGTCGATTATTTCGCTCTGGAATTGTGTTTTTTAAAAATAAAGATGGAATTGAATTTTTACAGGTCAGGTACTCTGGAGTAGGAGCAGCCATTGAATACGCCGTTCTTCATCTTAAGGTGGAGAACATCGTTGTCATTGGCCACAGTGCTTGTGGAGGTATCAAAGGTCTCATGTCACTACCTGAAGATGGTAGTGAATCAACGTACGTCACTCTATAAATCTATTCATTCAAAACACTTATCCTTAACAGATGATTGATTAATAATCTAATATACGCAGTGCCTTTATTGAGGATTGGGTAAAAATTTGTTTACCTGCCAAGGCAAAGGTTCTGGCCGATCACGGAGGGAAAGAATTTGCACATCAATGCACAGCTTGTGAGAAGGTAAAATTCAAATTTAACTTTTTGATTATCAATTAATTACATATATAGCAGTATTTTATAATTGATGAAAAATGTTGCAGGAAGCTGTGAACGTTTCACTTGGAAATCTGCTTACGTATCCATTCGTGAGAGAAGGATTGGTGAAGAAAACATTGGCATTGAAGGGAGGTTACTATGATTTCGTGAAGGGTGGATTTGAGCTGTGGGGACTTGAGTTCGGTCTTTCTCCTCCTCTTTCCGTATGAACTTAATTCAATTACCATTTGGCCCTCACAATTTCCTTCCTTTTTTTTTTTTTCGCCTGACAGTACTTTTGCTTCGCAAAATCAACTGTGTGTATGTTGTTTGTATGTATTATGTATGTATGAATCAAATATGGAAGAGCACTCGTTGTTATATTTCTGAAATAAATAAAATGGAGACTACTTTTTGTATAAATACGTT</genome_strand>
        <mrna_strand>ATGGTTTTCGCGTGCTCTGACTCACGAGTCTGCCCATCCCATGTCCTCAACTTCCAACCTGGTGAGGCATTCATGGTTCGTAACATCGCCAACATGGTCCCTGCTTATGACAAG.....................................................................................GTCAGGTACTCTGGAGTAGGAGCAGCCATTGAATACGCCGTTCTTCATCTTAAGGTGGAGAACATCGTTGTCATTGGCCACAGTGCTTGTGGAGGTATCAAAGGTCTCATGTCACTACCTGAAGATGGTAGTGAATCAAC.............................................................................TGCCTTTATTGAGGATTGGGTAAAAATTTGTTTACCTGCCAAGGCAAAGGTTCTGGCCGATCACGGAGGGAAAGAATTTGCACATCAATGCACAGCTTGTGAGAAG................................................................................GAAGCTGTGAACGTTTCACTTGGAAATCTGCTTACGTATCCATTCGTGAGAGAAGGATTGGTGAAGAAAACATTGGCATTGAAGGGAGGTTACTATGATTTCGTGAAGGGTGGATTTGAGCTGTGGGGACTTGAGTTCGGTCTTTCTCCTCCTCTTTCCGTATGAACTTAATTCAATTACCATTTGGCCCTCACAATTTCCTTCCTTTTTTTTTTTTTCGCCTGACAGTACTTATGCTTCGCAAAATCAACTGTGTGTATGTTGTTTGTATGTATTATGTATGTATGAATCAAATATGGAAGAGCACTCGTTGTTATATTTCTGAAATAAATAAAATGGAGTCTACTTCTGATATAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0236E02-u8qcS/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E289789" ref_strand="+" ref_description="SGN-E289789 [cLET-9-I12]">
      <seq>ggttttcgcgtgctctgactcacgagtctgcccatcccatgtcctcaacttccaacctggtgaggcattcatggttcgtaacatcgccaacatggtccctgcttatgacaaggtcaggtactctggagtaggagcagccattgaatacgccgttcttcatcttaaggtggagaacatcgttgtcattggccacagtgcttgtggaggtatcaaaggtctcatgtcactacctgaagatggtagtgaatcaactgcctttattgaggattgggtaaaaatttgtttacctgccaaggcaaaggttctggccgatcacggagggaaagaatttgcacatcaatgcacagcttgtgagaaggaagctgtgaacgtttcacttggaaatctgcttacgta</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0236E02-u8qcS/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0236E02.1" temp_strand="+" temp_description="C02HBa0236E02.1  AC215430.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0236E02 sequenced_by:kribb upload_account_name:korea">
        <position start="16894" stop="18131"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="17194" g_stop="17305" g_length="112"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="112" r_length="112" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="17306" i_stop="17390" i_length="85">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.979" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="17391" g_stop="17530" g_length="140"/>
          <reference_exon_boundary r_type="cDNA" r_start="113" r_stop="252" r_length="140" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="17531" i_stop="17607" i_length="77">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.948" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="17608" g_stop="17713" g_length="106"/>
          <reference_exon_boundary r_type="cDNA" r_start="253" r_stop="358" r_length="106" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="17714" i_stop="17793" i_length="80">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="17794" g_stop="17831" g_length="38"/>
          <reference_exon_boundary r_type="cDNA" r_start="359" r_stop="396" r_length="38" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0236E02.1" gen_strand="+" ref_id="SGN-E289789" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>396</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0236E02.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E289789" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="17194" e_stop="17305"/>
          <exon e_start="17391" e_stop="17530"/>
          <exon e_start="17608" e_stop="17713"/>
          <exon e_start="17794" e_stop="17831"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGTTTTCGCGTGCTCTGACTCACGAGTCTGCCCATCCCATGTCCTCAACTTCCAACCTGGTGAGGCATTCATGGTTCGTAACATCGCCAACATGGTCCCTGCTTATGACAAGGTCAGTTACAAATCGATCAACTAGTCGATTATTTCGCTCTGGAATTGTGTTTTTTAAAAATAAAGATGGAATTGAATTTTTACAGGTCAGGTACTCTGGAGTAGGAGCAGCCATTGAATACGCCGTTCTTCATCTTAAGGTGGAGAACATCGTTGTCATTGGCCACAGTGCTTGTGGAGGTATCAAAGGTCTCATGTCACTACCTGAAGATGGTAGTGAATCAACGTACGTCACTCTATAAATCTATTCATTCAAAACACTTATCCTTAACAGATGATTGATTAATAATCTAATATACGCAGTGCCTTTATTGAGGATTGGGTAAAAATTTGTTTACCTGCCAAGGCAAAGGTTCTGGCCGATCACGGAGGGAAAGAATTTGCACATCAATGCACAGCTTGTGAGAAGGTAAAATTCAAATTTAACTTTTTGATTATCAATTAATTACATATATAGCAGTATTTTATAATTGATGAAAAATGTTGCAGGAAGCTGTGAACGTTTCACTTGGAAATCTGCTTACGTA</genome_strand>
        <mrna_strand>GGTTTTCGCGTGCTCTGACTCACGAGTCTGCCCATCCCATGTCCTCAACTTCCAACCTGGTGAGGCATTCATGGTTCGTAACATCGCCAACATGGTCCCTGCTTATGACAAG.....................................................................................GTCAGGTACTCTGGAGTAGGAGCAGCCATTGAATACGCCGTTCTTCATCTTAAGGTGGAGAACATCGTTGTCATTGGCCACAGTGCTTGTGGAGGTATCAAAGGTCTCATGTCACTACCTGAAGATGGTAGTGAATCAAC.............................................................................TGCCTTTATTGAGGATTGGGTAAAAATTTGTTTACCTGCCAAGGCAAAGGTTCTGGCCGATCACGGAGGGAAAGAATTTGCACATCAATGCACAGCTTGTGAGAAG................................................................................GAAGCTGTGAACGTTTCACTTGGAAATCTGCTTACGTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0236E02-u8qcS/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E278109" ref_strand="+" ref_description="SGN-E278109 [cLER-4-D11]">
      <seq>tcgcgtgctctgactcacgagtctgcccatcccatgtcctcaacttccaacctggtgaggcattcatggttcgtaacatcgccaacatggtccctgcttatgacaaggtcaggtactctggagtaggagcagccattgaatacgccggtcttcatcttaaggtggagaacatcgttgtcattggccacagtgcttgtggaggtatcaaaagtctcatgtcactacctgaagatggtagtgaatcaactgcctttattgaggattgggtaaaaatttgtttacctgccaaggcaaaggttctggccgatcacggagggaaagaatttgcacatcaatgcacagcttgtgagaaggaagctgtgaacgtttcacttggaaatctgcttacgtatccattcntgagagaaagattggtgaagaaaacattggcatt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0236E02-u8qcS/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0236E02.1" temp_strand="+" temp_description="C02HBa0236E02.1  AC215430.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0236E02 sequenced_by:kribb upload_account_name:korea">
        <position start="16899" stop="18173"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="17199" g_stop="17305" g_length="107"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="107" r_length="107" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="17306" i_stop="17390" i_length="85">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.979" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="17391" g_stop="17530" g_length="140"/>
          <reference_exon_boundary r_type="cDNA" r_start="108" r_stop="247" r_length="140" r_score="0.986"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="17531" i_stop="17607" i_length="77">
            <donor d_prob="0.999" d_score="0.98"/>
            <acceptor a_prob="0.948" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="17608" g_stop="17713" g_length="106"/>
          <reference_exon_boundary r_type="cDNA" r_start="248" r_stop="353" r_length="106" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="17714" i_stop="17793" i_length="80">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="17794" g_stop="17873" g_length="80"/>
          <reference_exon_boundary r_type="cDNA" r_start="354" r_stop="433" r_length="80" r_score="0.975"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0236E02.1" gen_strand="+" ref_id="SGN-E278109" ref_strand="+">
        <total_alignment_score>0.991</total_alignment_score>
        <cumulative_length_of_scored_exons>433</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0236E02.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E278109" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="17199" e_stop="17305"/>
          <exon e_start="17391" e_stop="17530"/>
          <exon e_start="17608" e_stop="17713"/>
          <exon e_start="17794" e_stop="17873"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCGCGTGCTCTGACTCACGAGTCTGCCCATCCCATGTCCTCAACTTCCAACCTGGTGAGGCATTCATGGTTCGTAACATCGCCAACATGGTCCCTGCTTATGACAAGGTCAGTTACAAATCGATCAACTAGTCGATTATTTCGCTCTGGAATTGTGTTTTTTAAAAATAAAGATGGAATTGAATTTTTACAGGTCAGGTACTCTGGAGTAGGAGCAGCCATTGAATACGCCGTTCTTCATCTTAAGGTGGAGAACATCGTTGTCATTGGCCACAGTGCTTGTGGAGGTATCAAAGGTCTCATGTCACTACCTGAAGATGGTAGTGAATCAACGTACGTCACTCTATAAATCTATTCATTCAAAACACTTATCCTTAACAGATGATTGATTAATAATCTAATATACGCAGTGCCTTTATTGAGGATTGGGTAAAAATTTGTTTACCTGCCAAGGCAAAGGTTCTGGCCGATCACGGAGGGAAAGAATTTGCACATCAATGCACAGCTTGTGAGAAGGTAAAATTCAAATTTAACTTTTTGATTATCAATTAATTACATATATAGCAGTATTTTATAATTGATGAAAAATGTTGCAGGAAGCTGTGAACGTTTCACTTGGAAATCTGCTTACGTATCCATTCGTGAGAGAAGGATTGGTGAAGAAAACATTGGCATT</genome_strand>
        <mrna_strand>TCGCGTGCTCTGACTCACGAGTCTGCCCATCCCATGTCCTCAACTTCCAACCTGGTGAGGCATTCATGGTTCGTAACATCGCCAACATGGTCCCTGCTTATGACAAG.....................................................................................GTCAGGTACTCTGGAGTAGGAGCAGCCATTGAATACGCCGGTCTTCATCTTAAGGTGGAGAACATCGTTGTCATTGGCCACAGTGCTTGTGGAGGTATCAAAAGTCTCATGTCACTACCTGAAGATGGTAGTGAATCAAC.............................................................................TGCCTTTATTGAGGATTGGGTAAAAATTTGTTTACCTGCCAAGGCAAAGGTTCTGGCCGATCACGGAGGGAAAGAATTTGCACATCAATGCACAGCTTGTGAGAAG................................................................................GAAGCTGTGAACGTTTCACTTGGAAATCTGCTTACGTATCCATTCNTGAGAGAAAGATTGGTGAAGAAAACATTGGCATT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0236E02-u8qcS/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E290692" ref_strand="+" ref_description="SGN-E290692 [cLET-10-A12]">
      <seq>acgagtctgcccatcccatgtcctcaacttccaacctggtgaggcattcatggttcgtaacatcgccaacatggtccctgcttatgacaaggtcaggtactctggagtaggagcagccattgaatacgccgttcttcatcttaaggtggagaacatcgttgtcattggccacagtgcttgtggaggtatcaaaggtctcatgtcactacctgaagatggtagtgaatca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0236E02-u8qcS/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0236E02.1" temp_strand="+" temp_description="C02HBa0236E02.1  AC215430.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0236E02 sequenced_by:kribb upload_account_name:korea">
        <position start="16915" stop="17828"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="17215" g_stop="17305" g_length="91"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="91" r_length="91" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="17306" i_stop="17390" i_length="85">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.979" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="17391" g_stop="17528" g_length="138"/>
          <reference_exon_boundary r_type="cDNA" r_start="92" r_stop="229" r_length="138" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0236E02.1" gen_strand="+" ref_id="SGN-E290692" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>229</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0236E02.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E290692" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="17215" e_stop="17305"/>
          <exon e_start="17391" e_stop="17528"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACGAGTCTGCCCATCCCATGTCCTCAACTTCCAACCTGGTGAGGCATTCATGGTTCGTAACATCGCCAACATGGTCCCTGCTTATGACAAGGTCAGTTACAAATCGATCAACTAGTCGATTATTTCGCTCTGGAATTGTGTTTTTTAAAAATAAAGATGGAATTGAATTTTTACAGGTCAGGTACTCTGGAGTAGGAGCAGCCATTGAATACGCCGTTCTTCATCTTAAGGTGGAGAACATCGTTGTCATTGGCCACAGTGCTTGTGGAGGTATCAAAGGTCTCATGTCACTACCTGAAGATGGTAGTGAATCA</genome_strand>
        <mrna_strand>ACGAGTCTGCCCATCCCATGTCCTCAACTTCCAACCTGGTGAGGCATTCATGGTTCGTAACATCGCCAACATGGTCCCTGCTTATGACAAG.....................................................................................GTCAGGTACTCTGGAGTAGGAGCAGCCATTGAATACGCCGTTCTTCATCTTAAGGTGGAGAACATCGTTGTCATTGGCCACAGTGCTTGTGGAGGTATCAAAGGTCTCATGTCACTACCTGAAGATGGTAGTGAATCA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0236E02-u8qcS/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E402991" ref_strand="-" ref_description="SGN-E402991 [PPC-9-E16]">
      <seq>agtgtgcccatcccatgtcctcaacttccaacctgtngaggcattcatggttcgtaacattgccaacatggtccctgcttatgacaaggtgagatactctggagtgggagcagccattgagtacgctgttcttcatcttaaggtggagaacatcgttgtcattggccacagtgcttgtggaggtatcaaaggtctcatgtctctacctgaagatggtagtgaatcaactgcctttattgaggattgggtgaaaatttgtttacctgccaaggccaaggttctggccgatcacggagataaagaatttggacatcaatgcacagcttgtgagaaggaagctgtgaacgtttcacttggaaatctgcttacgtatccattcgtgagagaaggattggtgaagaaaacattggcattgaagggaggttactatgatttcgtgaagggaggatttgagctgtggggacttgagttcggtctttctcctgctctttccgtatgaacttaattcaattaccatttggccctcacaatttccttcctttttttttcgcctgacagtactttttctttgcttatgtaattgcttcgcaaaatcaactgtgtatgttgtttgtatgtattatgtatgtatcaatcaaatatgtaagaggcactcgtttttatatttctgaaataaatgaaatggagagtaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0236E02-u8qcS/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0236E02.1" temp_strand="+" temp_description="C02HBa0236E02.1  AC215430.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0236E02 sequenced_by:kribb upload_account_name:korea">
        <position start="16918" stop="18438"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="17218" g_stop="17305" g_length="88"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="88" r_length="88" r_score="0.955"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="17306" i_stop="17390" i_length="85">
            <donor d_prob="0.999" d_score="0.98"/>
            <acceptor a_prob="0.979" a_score="0.90"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="17391" g_stop="17530" g_length="140"/>
          <reference_exon_boundary r_type="cDNA" r_start="89" r_stop="228" r_length="140" r_score="0.957"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="17531" i_stop="17607" i_length="77">
            <donor d_prob="0.999" d_score="0.98"/>
            <acceptor a_prob="0.948" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="17608" g_stop="17713" g_length="106"/>
          <reference_exon_boundary r_type="cDNA" r_start="229" r_stop="334" r_length="106" r_score="0.953"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="17714" i_stop="17793" i_length="80">
            <donor d_prob="1.000" d_score="0.94"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="17794" g_stop="18144" g_length="351"/>
          <reference_exon_boundary r_type="cDNA" r_start="335" r_stop="697" r_length="363" r_score="0.852"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0236E02.1" gen_strand="+" ref_id="SGN-E402991" ref_strand="-">
        <total_alignment_score>0.902</total_alignment_score>
        <cumulative_length_of_scored_exons>685</cumulative_length_of_scored_exons>
        <coverage percentage="0.983" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0236E02.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E402991" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="17218" e_stop="17305"/>
          <exon e_start="17391" e_stop="17530"/>
          <exon e_start="17608" e_stop="17713"/>
          <exon e_start="17794" e_stop="18144"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGTCTGCCCATCCCATGTCCTCAACTTCCAACCTGGTGAGGCATTCATGGTTCGTAACATCGCCAACATGGTCCCTGCTTATGACAAGGTCAGTTACAAATCGATCAACTAGTCGATTATTTCGCTCTGGAATTGTGTTTTTTAAAAATAAAGATGGAATTGAATTTTTACAGGTCAGGTACTCTGGAGTAGGAGCAGCCATTGAATACGCCGTTCTTCATCTTAAGGTGGAGAACATCGTTGTCATTGGCCACAGTGCTTGTGGAGGTATCAAAGGTCTCATGTCACTACCTGAAGATGGTAGTGAATCAACGTACGTCACTCTATAAATCTATTCATTCAAAACACTTATCCTTAACAGATGATTGATTAATAATCTAATATACGCAGTGCCTTTATTGAGGATTGGGTAAAAATTTGTTTACCTGCCAAGGCAAAGGTTCTGGCCGATCACGGAGGGAAAGAATTTGCACATCAATGCACAGCTTGTGAGAAGGTAAAATTCAAATTTAACTTTTTGATTATCAATTAATTACATATATAGCAGTATTTTATAATTGATGAAAAATGTTGCAGGAAGCTGTGAACGTTTCACTTGGAAATCTGCTTACGTATCCATTCGTGAGAGAAGGATTGGTGAAGAAAACATTGGCATTGAAGGGAGGTTACTATGATTTCGTGAAGGGTGGATTTGAGCTGTGGGGACTTGAGTTCGGTCTTTCTCCTCCTCTTTCCGTATGAACTTAATTCAATTACCATTTGGCCCTCACAATTTCCTTCCTTTTTTTTT---TTTTC-G--C-CTGAC--AG--TA-CT-TTTGCTTCGCAAAATCAACTGTGTGTATGTTGTTTGTATGTATTATGTATGTATGAATCAAATATGGAAGA-GCACTCGTTGTTATATTTCTGAAATAAATAAAATGGAGACTACTTTTT</genome_strand>
        <mrna_strand>AGTGTGCCCATCCCATGTCCTCAACTTCCAACCTGTNGAGGCATTCATGGTTCGTAACATTGCCAACATGGTCCCTGCTTATGACAAG.....................................................................................GTGAGATACTCTGGAGTGGGAGCAGCCATTGAGTACGCTGTTCTTCATCTTAAGGTGGAGAACATCGTTGTCATTGGCCACAGTGCTTGTGGAGGTATCAAAGGTCTCATGTCTCTACCTGAAGATGGTAGTGAATCAAC.............................................................................TGCCTTTATTGAGGATTGGGTGAAAATTTGTTTACCTGCCAAGGCCAAGGTTCTGGCCGATCACGGAGATAAAGAATTTGGACATCAATGCACAGCTTGTGAGAAG................................................................................GAAGCTGTGAACGTTTCACTTGGAAATCTGCTTACGTATCCATTCGTGAGAGAAGGATTGGTGAAGAAAACATTGGCATTGAAGGGAGGTTACTATGATTTCGTGAAGGGAGGATTTGAGCTGTGGGGACTTGAGTTCGGTCTTTCTCCTGCTCTTTCCGTATGAACTTAATTCAATTACCATTTGGCCCTCACAATTTCCTTCCTTTTTTTTTCGCCTGACAGTACTTTTTCTTTGCTTATGTAATTGCTTCGCAAAATCAAC--TGTGTATGTTGTTTGTATGTATTATGTATGTATCAATCAAATATGTAAGAGGCACTCGTTTTTATATTTCTGAAATAAATGAAATGGAGAGTAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0236E02-u8qcS/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E694905" ref_strand="+" ref_description="SGN-E694905 [LH_Ea05C07](-)">
      <seq>cccatcccatgtcctcaacttccaacctggtgaggcaatcatggttcgtaacattgccaacatggtccctgcttatgacaaggtcaggtactctggagtaggagcagccattgaatacgcggttcttcatattaaggtggagaacatcgttgtcattggccacagtgcttgtggaggtatcaaaggtctcatgtcactacctgaagatggtagtgaatcaactgcctttattgaggattgggtgaaaatttgtttacctgccaaggcaaaggttctggccgatcacggagggaaagaatttggacatcaatgcacagcttgtgagaaggaagctgtgaacgtttcacttggaaatctgcttacgtatccattcgtgagagaaggattggtgaagaaaacattggcattgaagggaggatactatgatttcgtgaagggtggatttgagctgtggggacttgaattcaatctttctcctcctctttccctatnaacttaattcaattaccatttaaccctcacaatttccggcctttttttttttcccctgacagtatttttgcttcgcaaaatcaactntctatcttctttgtatgttttataagtgtatgaatcaaatatggaagagcactcgttgcttttattgtaaataaataaaatggagactacttttgtaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0236E02-u8qcS/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0236E02.1" temp_strand="+" temp_description="C02HBa0236E02.1  AC215430.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0236E02 sequenced_by:kribb upload_account_name:korea">
        <position start="16924" stop="18453"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="17224" g_stop="17305" g_length="82"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="82" r_length="82" r_score="0.976"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="17306" i_stop="17390" i_length="85">
            <donor d_prob="0.999" d_score="0.96"/>
            <acceptor a_prob="0.979" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="17391" g_stop="17530" g_length="140"/>
          <reference_exon_boundary r_type="cDNA" r_start="83" r_stop="222" r_length="140" r_score="0.986"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="17531" i_stop="17607" i_length="77">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.948" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="17608" g_stop="17713" g_length="106"/>
          <reference_exon_boundary r_type="cDNA" r_start="223" r_stop="328" r_length="106" r_score="0.981"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="17714" i_stop="17793" i_length="80">
            <donor d_prob="1.000" d_score="0.98"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="17794" g_stop="18155" g_length="362"/>
          <reference_exon_boundary r_type="cDNA" r_start="329" r_stop="684" r_length="356" r_score="0.903"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0236E02.1" gen_strand="+" ref_id="SGN-E694905" ref_strand="+">
        <total_alignment_score>0.941</total_alignment_score>
        <cumulative_length_of_scored_exons>690</cumulative_length_of_scored_exons>
        <coverage percentage="1.009" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0236E02.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E694905" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="17224" e_stop="17305"/>
          <exon e_start="17391" e_stop="17530"/>
          <exon e_start="17608" e_stop="17713"/>
          <exon e_start="17794" e_stop="18155"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCCATCCCATGTCCTCAACTTCCAACCTGGTGAGGCATTCATGGTTCGTAACATCGCCAACATGGTCCCTGCTTATGACAAGGTCAGTTACAAATCGATCAACTAGTCGATTATTTCGCTCTGGAATTGTGTTTTTTAAAAATAAAGATGGAATTGAATTTTTACAGGTCAGGTACTCTGGAGTAGGAGCAGCCATTGAATACGCCGTTCTTCATCTTAAGGTGGAGAACATCGTTGTCATTGGCCACAGTGCTTGTGGAGGTATCAAAGGTCTCATGTCACTACCTGAAGATGGTAGTGAATCAACGTACGTCACTCTATAAATCTATTCATTCAAAACACTTATCCTTAACAGATGATTGATTAATAATCTAATATACGCAGTGCCTTTATTGAGGATTGGGTAAAAATTTGTTTACCTGCCAAGGCAAAGGTTCTGGCCGATCACGGAGGGAAAGAATTTGCACATCAATGCACAGCTTGTGAGAAGGTAAAATTCAAATTTAACTTTTTGATTATCAATTAATTACATATATAGCAGTATTTTATAATTGATGAAAAATGTTGCAGGAAGCTGTGAACGTTTCACTTGGAAATCTGCTTACGTATCCATTCGTGAGAGAAGGATTGGTGAAGAAAACATTGGCATTGAAGGGAGGTTACTATGATTTCGTGAAGGGTGGATTTGAGCTGTGGGGACTTGAGTTCGGTCTTTCTCCTCCTCTTTCCGTATGAACTTAATTCAATTACCATTTGGCCCTCACAATTTCCTTCCTTTTTTTTTTTTTCGCCTGACAGTACTTTTGCTTCGCAAAATCAACTGTGTGTATGTTGTTTGTATGTATTATGTATGTATGAATCAAATATGGAAGAGCACTCGTTGTTATATTTCTGAAATAAATAAAATGGAGACTACTTTTTGTATAAATACG</genome_strand>
        <mrna_strand>CCCATCCCATGTCCTCAACTTCCAACCTGGTGAGGCAATCATGGTTCGTAACATTGCCAACATGGTCCCTGCTTATGACAAG.....................................................................................GTCAGGTACTCTGGAGTAGGAGCAGCCATTGAATACGCGGTTCTTCATATTAAGGTGGAGAACATCGTTGTCATTGGCCACAGTGCTTGTGGAGGTATCAAAGGTCTCATGTCACTACCTGAAGATGGTAGTGAATCAAC.............................................................................TGCCTTTATTGAGGATTGGGTGAAAATTTGTTTACCTGCCAAGGCAAAGGTTCTGGCCGATCACGGAGGGAAAGAATTTGGACATCAATGCACAGCTTGTGAGAAG................................................................................GAAGCTGTGAACGTTTCACTTGGAAATCTGCTTACGTATCCATTCGTGAGAGAAGGATTGGTGAAGAAAACATTGGCATTGAAGGGAGGATACTATGATTTCGTGAAGGGTGGATTTGAGCTGTGGGGACTTGAATTCAATCTTTCTCCTCCTCTTTCCCTATNAACTTAATTCAATTACCATTTAACCCTCACAATTTCCGGCC--TTTTTTTTTTTCCCCTGACAGTATTTTTGCTTCGCAAAATCAAC--TNTCTATCTTCTTTGTATGTTTTATAAGTGTATGAATCAAATATGGAAGAGCACTCGTTGCTTTTATTGT-AAATAAATAAAATGGAGACTAC-TTTTGTAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0236E02-u8qcS/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E296253" ref_strand="+" ref_description="SGN-E296253 [cLET-24-H2]">
      <seq>caacttccaacctggtgaggcattcatggttcgtaacatcgccaacatggtccctgcttatgacaaggtcaggtactctggagtaggagcagccattgaatacgccgttcttcatcttaaggtggagaacatcgctgtcattggccacagtgcttgtggaggtatcaaaggtctcatgtcactacctgaagatggtagtgaactcaactgcctttattgaggattgggtaaaaatttgtttacctgccaaggcaaaggttctggccgatcacggagggaaagaatttgcacatcaatgcacagcttgtgagaaggaagctgtgaacgtttcacttggaaatctgcttacgtatccattcgtgagagaaggattggtgaataaaacattggcattgaagggaggttactatgatttcgtgaagggtggatttgagctgtggggacttgagttcggtctttctcctcctctttccgtatgaacttaattcaattaccatttggccctcac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0236E02-u8qcS/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0236E02.1" temp_strand="+" temp_description="C02HBa0236E02.1  AC215430.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0236E02 sequenced_by:kribb upload_account_name:korea">
        <position start="16939" stop="18287"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="17239" g_stop="17305" g_length="67"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="67" r_length="67" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="17306" i_stop="17390" i_length="85">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.979" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="17391" g_stop="17530" g_length="140"/>
          <reference_exon_boundary r_type="cDNA" r_start="68" r_stop="208" r_length="141" r_score="0.979"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="17531" i_stop="17607" i_length="77">
            <donor d_prob="0.999" d_score="0.96"/>
            <acceptor a_prob="0.948" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="17608" g_stop="17713" g_length="106"/>
          <reference_exon_boundary r_type="cDNA" r_start="209" r_stop="314" r_length="106" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="17714" i_stop="17793" i_length="80">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="17794" g_stop="17987" g_length="194"/>
          <reference_exon_boundary r_type="cDNA" r_start="315" r_stop="508" r_length="194" r_score="0.995"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0236E02.1" gen_strand="+" ref_id="SGN-E296253" ref_strand="+">
        <total_alignment_score>0.992</total_alignment_score>
        <cumulative_length_of_scored_exons>507</cumulative_length_of_scored_exons>
        <coverage percentage="0.998" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0236E02.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E296253" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="17239" e_stop="17305"/>
          <exon e_start="17391" e_stop="17530"/>
          <exon e_start="17608" e_stop="17713"/>
          <exon e_start="17794" e_stop="17987"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAACTTCCAACCTGGTGAGGCATTCATGGTTCGTAACATCGCCAACATGGTCCCTGCTTATGACAAGGTCAGTTACAAATCGATCAACTAGTCGATTATTTCGCTCTGGAATTGTGTTTTTTAAAAATAAAGATGGAATTGAATTTTTACAGGTCAGGTACTCTGGAGTAGGAGCAGCCATTGAATACGCCGTTCTTCATCTTAAGGTGGAGAACATCGTTGTCATTGGCCACAGTGCTTGTGGAGGTATCAAAGGTCTCATGTCACTACCTGAAGATGGTAGTGAA-TCAACGTACGTCACTCTATAAATCTATTCATTCAAAACACTTATCCTTAACAGATGATTGATTAATAATCTAATATACGCAGTGCCTTTATTGAGGATTGGGTAAAAATTTGTTTACCTGCCAAGGCAAAGGTTCTGGCCGATCACGGAGGGAAAGAATTTGCACATCAATGCACAGCTTGTGAGAAGGTAAAATTCAAATTTAACTTTTTGATTATCAATTAATTACATATATAGCAGTATTTTATAATTGATGAAAAATGTTGCAGGAAGCTGTGAACGTTTCACTTGGAAATCTGCTTACGTATCCATTCGTGAGAGAAGGATTGGTGAAGAAAACATTGGCATTGAAGGGAGGTTACTATGATTTCGTGAAGGGTGGATTTGAGCTGTGGGGACTTGAGTTCGGTCTTTCTCCTCCTCTTTCCGTATGAACTTAATTCAATTACCATTTGGCCCTCAC</genome_strand>
        <mrna_strand>CAACTTCCAACCTGGTGAGGCATTCATGGTTCGTAACATCGCCAACATGGTCCCTGCTTATGACAAG.....................................................................................GTCAGGTACTCTGGAGTAGGAGCAGCCATTGAATACGCCGTTCTTCATCTTAAGGTGGAGAACATCGCTGTCATTGGCCACAGTGCTTGTGGAGGTATCAAAGGTCTCATGTCACTACCTGAAGATGGTAGTGAACTCAAC.............................................................................TGCCTTTATTGAGGATTGGGTAAAAATTTGTTTACCTGCCAAGGCAAAGGTTCTGGCCGATCACGGAGGGAAAGAATTTGCACATCAATGCACAGCTTGTGAGAAG................................................................................GAAGCTGTGAACGTTTCACTTGGAAATCTGCTTACGTATCCATTCGTGAGAGAAGGATTGGTGAATAAAACATTGGCATTGAAGGGAGGTTACTATGATTTCGTGAAGGGTGGATTTGAGCTGTGGGGACTTGAGTTCGGTCTTTCTCCTCCTCTTTCCGTATGAACTTAATTCAATTACCATTTGGCCCTCAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0236E02-u8qcS/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E278631" ref_strand="+" ref_description="SGN-E278631 [cLER-10-N2]">
      <seq>aacttccaacctggtgaggcattcatggttcgtaacatcgccaacatggtccctgcttatgacaaggtcaggtactctggagtaggagcagccattgaatacgccgttcttcatcttaaggtggagaacatcgttgtcattggccacagtgcttgtggaggtatcaaaggtctcatgtcactacctgaagatggtagtgaatcaactgcctttattgaggattgggtaaaaatttgtttacctgccaaggcaaaggttctggccgatcacggagggaaagaatttgcacatcaatgcacagcttgtgagaaggaagctgtgaacgtttcacttggaaatctgcttacgtatccattcgtgagagaaggattggtgaagaaaacattggcattgaagggaggttactatgatttcgtgaagggtggatttgagctgtggggact</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0236E02-u8qcS/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0236E02.1" temp_strand="+" temp_description="C02HBa0236E02.1  AC215430.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0236E02 sequenced_by:kribb upload_account_name:korea">
        <position start="16940" stop="18224"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="17240" g_stop="17305" g_length="66"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="66" r_length="66" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="17306" i_stop="17390" i_length="85">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.979" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="17391" g_stop="17530" g_length="140"/>
          <reference_exon_boundary r_type="cDNA" r_start="67" r_stop="206" r_length="140" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="17531" i_stop="17607" i_length="77">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.948" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="17608" g_stop="17713" g_length="106"/>
          <reference_exon_boundary r_type="cDNA" r_start="207" r_stop="312" r_length="106" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="17714" i_stop="17793" i_length="80">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="17794" g_stop="17924" g_length="131"/>
          <reference_exon_boundary r_type="cDNA" r_start="313" r_stop="443" r_length="131" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0236E02.1" gen_strand="+" ref_id="SGN-E278631" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>443</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0236E02.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E278631" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="17240" e_stop="17305"/>
          <exon e_start="17391" e_stop="17530"/>
          <exon e_start="17608" e_stop="17713"/>
          <exon e_start="17794" e_stop="17924"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AACTTCCAACCTGGTGAGGCATTCATGGTTCGTAACATCGCCAACATGGTCCCTGCTTATGACAAGGTCAGTTACAAATCGATCAACTAGTCGATTATTTCGCTCTGGAATTGTGTTTTTTAAAAATAAAGATGGAATTGAATTTTTACAGGTCAGGTACTCTGGAGTAGGAGCAGCCATTGAATACGCCGTTCTTCATCTTAAGGTGGAGAACATCGTTGTCATTGGCCACAGTGCTTGTGGAGGTATCAAAGGTCTCATGTCACTACCTGAAGATGGTAGTGAATCAACGTACGTCACTCTATAAATCTATTCATTCAAAACACTTATCCTTAACAGATGATTGATTAATAATCTAATATACGCAGTGCCTTTATTGAGGATTGGGTAAAAATTTGTTTACCTGCCAAGGCAAAGGTTCTGGCCGATCACGGAGGGAAAGAATTTGCACATCAATGCACAGCTTGTGAGAAGGTAAAATTCAAATTTAACTTTTTGATTATCAATTAATTACATATATAGCAGTATTTTATAATTGATGAAAAATGTTGCAGGAAGCTGTGAACGTTTCACTTGGAAATCTGCTTACGTATCCATTCGTGAGAGAAGGATTGGTGAAGAAAACATTGGCATTGAAGGGAGGTTACTATGATTTCGTGAAGGGTGGATTTGAGCTGTGGGGACT</genome_strand>
        <mrna_strand>AACTTCCAACCTGGTGAGGCATTCATGGTTCGTAACATCGCCAACATGGTCCCTGCTTATGACAAG.....................................................................................GTCAGGTACTCTGGAGTAGGAGCAGCCATTGAATACGCCGTTCTTCATCTTAAGGTGGAGAACATCGTTGTCATTGGCCACAGTGCTTGTGGAGGTATCAAAGGTCTCATGTCACTACCTGAAGATGGTAGTGAATCAAC.............................................................................TGCCTTTATTGAGGATTGGGTAAAAATTTGTTTACCTGCCAAGGCAAAGGTTCTGGCCGATCACGGAGGGAAAGAATTTGCACATCAATGCACAGCTTGTGAGAAG................................................................................GAAGCTGTGAACGTTTCACTTGGAAATCTGCTTACGTATCCATTCGTGAGAGAAGGATTGGTGAAGAAAACATTGGCATTGAAGGGAGGTTACTATGATTTCGTGAAGGGTGGATTTGAGCTGTGGGGACT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0236E02-u8qcS/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E549262" ref_strand="+" ref_description="SGN-E549262 [TUS-68-M19](-)">
      <seq>ttccaacctggtgaggcattcatggttcgtaacatcgccaacatggtcccctgcttatgacaaggtcaggtactctggagtaggagcagccattgaatacgccgttcttcatcttaaggtggagaacatcgttgtcattggccacagtgcttgtggaggtatcaaaggtctcatgtcactacctgaagatggtagtgaatcgactgcctttattgaggattgggtgaaaatttgtttacctgccaaggcaaaggttctggccgatcacggagggaaagaatttggacatcaatgcacagcttgtgagaaggaagctgtgaacgtttcacttggaaatctgcttacgtatccattcgtgagagaaggattggtgaagaaaacattggcattgaagggaggttactatgatttcgtgaagggtggatttgagctgtggggacttgagttcggtctttctcctcctctttccgtatgaacttaattcaattaccatttggccctcacaatttccttccttttttttttccgcctgacagtatttttgcttcgcaaaatcaactgtgtatgttgtttgtatgtattatgtatgtatgaatcaaatatggaagagcactcgttgttatatttctgaaatgaataaaatggagactacttttggtataaaaaaaaaaaaaagaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0236E02-u8qcS/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0236E02.1" temp_strand="+" temp_description="C02HBa0236E02.1  AC215430.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0236E02 sequenced_by:kribb upload_account_name:korea">
        <position start="16943" stop="126851"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="17243" g_stop="17305" g_length="63"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="64" r_length="64" r_score="0.968"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="17306" i_stop="17390" i_length="85">
            <donor d_prob="0.999" d_score="0.96"/>
            <acceptor a_prob="0.979" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="17391" g_stop="17530" g_length="140"/>
          <reference_exon_boundary r_type="cDNA" r_start="65" r_stop="204" r_length="140" r_score="0.993"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="17531" i_stop="17607" i_length="77">
            <donor d_prob="0.999" d_score="0.98"/>
            <acceptor a_prob="0.948" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="17608" g_stop="17713" g_length="106"/>
          <reference_exon_boundary r_type="cDNA" r_start="205" r_stop="310" r_length="106" r_score="0.981"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="17714" i_stop="17793" i_length="80">
            <donor d_prob="1.000" d_score="0.98"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="17794" g_stop="18150" g_length="357"/>
          <reference_exon_boundary r_type="cDNA" r_start="311" r_stop="663" r_length="353" r_score="0.978"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="18151" i_stop="18522" i_length="372">
            <donor d_prob="0.000" d_score="0.96"/>
            <acceptor a_prob="0.000" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="18523" g_stop="18541" g_length="19"/>
          <reference_exon_boundary r_type="cDNA" r_start="664" r_stop="681" r_length="18" r_score="0.842"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0236E02.1" gen_strand="+" ref_id="SGN-E549262" ref_strand="+">
        <total_alignment_score>0.980</total_alignment_score>
        <cumulative_length_of_scored_exons>685</cumulative_length_of_scored_exons>
        <coverage percentage="1.006" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0236E02.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E549262" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="17243" e_stop="17305"/>
          <exon e_start="17391" e_stop="17530"/>
          <exon e_start="17608" e_stop="17713"/>
          <exon e_start="17794" e_stop="18150"/>
          <exon e_start="18523" e_stop="18541"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTCCAACCTGGTGAGGCATTCATGGTTCGTAACATCGCCAACATGGT-CCCTGCTTATGACAAGGTCAGTTACAAATCGATCAACTAGTCGATTATTTCGCTCTGGAATTGTGTTTTTTAAAAATAAAGATGGAATTGAATTTTTACAGGTCAGGTACTCTGGAGTAGGAGCAGCCATTGAATACGCCGTTCTTCATCTTAAGGTGGAGAACATCGTTGTCATTGGCCACAGTGCTTGTGGAGGTATCAAAGGTCTCATGTCACTACCTGAAGATGGTAGTGAATCAACGTACGTCACTCTATAAATCTATTCATTCAAAACACTTATCCTTAACAGATGATTGATTAATAATCTAATATACGCAGTGCCTTTATTGAGGATTGGGTAAAAATTTGTTTACCTGCCAAGGCAAAGGTTCTGGCCGATCACGGAGGGAAAGAATTTGCACATCAATGCACAGCTTGTGAGAAGGTAAAATTCAAATTTAACTTTTTGATTATCAATTAATTACATATATAGCAGTATTTTATAATTGATGAAAAATGTTGCAGGAAGCTGTGAACGTTTCACTTGGAAATCTGCTTACGTATCCATTCGTGAGAGAAGGATTGGTGAAGAAAACATTGGCATTGAAGGGAGGTTACTATGATTTCGTGAAGGGTGGATTTGAGCTGTGGGGACTTGAGTTCGGTCTTTCTCCTCCTCTTTCCGTATGAACTTAATTCAATTACCATTTGGCCCTCACAATTTCCTTCCTTTTTTTTTTTTTCGCCTGACAGTACTTTTGCTTCGCAAAATCAACTGTGTGTATGTTGTTTGTATGTATTATGTATGTATGAATCAAATATGGAAGAGCACTCGTTGTTATATTTCTGAAATAAATAAAATGGAGACTACTTTTTGTATAAATACGTTTGTGGTGGGCTTTGGTAGGTAAAAGATGTGGCCAGTATACTGCACTGGAAGCTCATGTAGAGACAGAGAGATCGTCAAGCAACAAGAGGATTCCCAGATTTAATCTGTTATTCTTGCTCATGTAGACCAAAAATTGGCCATAATAATCTACAAACACTCTTTTCGGCTACAATTATACTAGTTTAACTTTCCATGATGCTTCTCTCATTTGTTAGTGTCAGACAACAATCCATTACAAAGCGGAAAATTTGTCTTAGTTTGCAAATCCTTTCAAGAGATTTAGGGTTCCACTCTAAAATGGGAAAGTTCGAATAAGTTGAAGCTAATGGATTGGGAATACCAAATGGAGTAATAATCTATATAAGAAAAAAAAAAGAAGCAAAT</genome_strand>
        <mrna_strand>TTCCAACCTGGTGAGGCATTCATGGTTCGTAACATCGCCAACATGGTCCCCTGCTTATGACAAG.....................................................................................GTCAGGTACTCTGGAGTAGGAGCAGCCATTGAATACGCCGTTCTTCATCTTAAGGTGGAGAACATCGTTGTCATTGGCCACAGTGCTTGTGGAGGTATCAAAGGTCTCATGTCACTACCTGAAGATGGTAGTGAATCGAC.............................................................................TGCCTTTATTGAGGATTGGGTGAAAATTTGTTTACCTGCCAAGGCAAAGGTTCTGGCCGATCACGGAGGGAAAGAATTTGGACATCAATGCACAGCTTGTGAGAAG................................................................................GAAGCTGTGAACGTTTCACTTGGAAATCTGCTTACGTATCCATTCGTGAGAGAAGGATTGGTGAAGAAAACATTGGCATTGAAGGGAGGTTACTATGATTTCGTGAAGGGTGGATTTGAGCTGTGGGGACTTGAGTTCGGTCTTTCTCCTCCTCTTTCCGTATGAACTTAATTCAATTACCATTTGGCCCTCACAATTTCCTTCC--TTTTTTTTTTCCGCCTGACAGTATTTTTGCTTCGCAAAATCAAC--TGTGTATGTTGTTTGTATGTATTATGTATGTATGAATCAAATATGGAAGAGCACTCGTTGTTATATTTCTGAAATGAATAAAATGGAGACTACTTTTGGTATAA....................................................................................................................................................................................................................................................................................................................................................................................AAAAAAAAAA-AAGAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0236E02-u8qcS/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E342393" ref_strand="+" ref_description="SGN-E342393 [cTOF-8-A11]">
      <seq>tggttcgtaacatcgccaacatggtccctgcttatgacaaggtcaggtactctggagtaggagcagccattgaatacgccgttcttcatcttaaggtggagaacatcgttgtcattggccacagtgcttgtggaggtatcaaaggtctcatgtcactacctgaagatggtagtgaatcaactgcctttattgaggattgggtaaaaatttgtttacctgccaaggcaaaggttctggccgatcacggagggaaagaatttgcacatcaatgcacagcttgtgagaaggaagctgtgaacgtttcacttggaaatctgcttacgtatccattcgtgagagaaggattggtgaagaaaacattggcattgaagggaggttactatgatttcgtgaagggtggatttgagctgtggggacttgagttcggtctttctcctcctctttccgtatgaacttaattcaattaccatttggccctcacaatttccttccttttttttttttttcgcctgacagtacttttgcttcgcaaatcaactngtgtgtatgtgnttgtatgtattatgtatgtatgaatcaaatatggaagagcactcgttgttatatttctgaaataaataaaatggagactacttt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0236E02-u8qcS/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0236E02.1" temp_strand="+" temp_description="C02HBa0236E02.1  AC215430.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0236E02 sequenced_by:kribb upload_account_name:korea">
        <position start="16965" stop="18442"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="17265" g_stop="17305" g_length="41"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="41" r_length="41" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="17306" i_stop="17390" i_length="85">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.979" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="17391" g_stop="17530" g_length="140"/>
          <reference_exon_boundary r_type="cDNA" r_start="42" r_stop="181" r_length="140" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="17531" i_stop="17607" i_length="77">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.948" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="17608" g_stop="17713" g_length="106"/>
          <reference_exon_boundary r_type="cDNA" r_start="182" r_stop="287" r_length="106" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="17714" i_stop="17793" i_length="80">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="17794" g_stop="18142" g_length="349"/>
          <reference_exon_boundary r_type="cDNA" r_start="288" r_stop="636" r_length="349" r_score="0.980"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0236E02.1" gen_strand="+" ref_id="SGN-E342393" ref_strand="+">
        <total_alignment_score>0.988</total_alignment_score>
        <cumulative_length_of_scored_exons>636</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0236E02.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E342393" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="17265" e_stop="17305"/>
          <exon e_start="17391" e_stop="17530"/>
          <exon e_start="17608" e_stop="17713"/>
          <exon e_start="17794" e_stop="18142"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGGTTCGTAACATCGCCAACATGGTCCCTGCTTATGACAAGGTCAGTTACAAATCGATCAACTAGTCGATTATTTCGCTCTGGAATTGTGTTTTTTAAAAATAAAGATGGAATTGAATTTTTACAGGTCAGGTACTCTGGAGTAGGAGCAGCCATTGAATACGCCGTTCTTCATCTTAAGGTGGAGAACATCGTTGTCATTGGCCACAGTGCTTGTGGAGGTATCAAAGGTCTCATGTCACTACCTGAAGATGGTAGTGAATCAACGTACGTCACTCTATAAATCTATTCATTCAAAACACTTATCCTTAACAGATGATTGATTAATAATCTAATATACGCAGTGCCTTTATTGAGGATTGGGTAAAAATTTGTTTACCTGCCAAGGCAAAGGTTCTGGCCGATCACGGAGGGAAAGAATTTGCACATCAATGCACAGCTTGTGAGAAGGTAAAATTCAAATTTAACTTTTTGATTATCAATTAATTACATATATAGCAGTATTTTATAATTGATGAAAAATGTTGCAGGAAGCTGTGAACGTTTCACTTGGAAATCTGCTTACGTATCCATTCGTGAGAGAAGGATTGGTGAAGAAAACATTGGCATTGAAGGGAGGTTACTATGATTTCGTGAAGGGTGGATTTGAGCTGTGGGGACTTGAGTTCGGTCTTTCTCCTCCTCTTTCCGTATGAACTTAATTCAATTACCATTTGGCCCTCACAATTTCCTTCC-TTTTTTTTTTTTTCGCCTGACAGTACTTTTGCTTCGCAAAATCAACT-GTGTGTATGTTGTTTGTATGTATTATGTATGTATGAATCAAATATGGAAGAGCACTCGTTGTTATATTTCTGAAATAAATAAAATGGAGACTACTTT</genome_strand>
        <mrna_strand>TGGTTCGTAACATCGCCAACATGGTCCCTGCTTATGACAAG.....................................................................................GTCAGGTACTCTGGAGTAGGAGCAGCCATTGAATACGCCGTTCTTCATCTTAAGGTGGAGAACATCGTTGTCATTGGCCACAGTGCTTGTGGAGGTATCAAAGGTCTCATGTCACTACCTGAAGATGGTAGTGAATCAAC.............................................................................TGCCTTTATTGAGGATTGGGTAAAAATTTGTTTACCTGCCAAGGCAAAGGTTCTGGCCGATCACGGAGGGAAAGAATTTGCACATCAATGCACAGCTTGTGAGAAG................................................................................GAAGCTGTGAACGTTTCACTTGGAAATCTGCTTACGTATCCATTCGTGAGAGAAGGATTGGTGAAGAAAACATTGGCATTGAAGGGAGGTTACTATGATTTCGTGAAGGGTGGATTTGAGCTGTGGGGACTTGAGTTCGGTCTTTCTCCTCCTCTTTCCGTATGAACTTAATTCAATTACCATTTGGCCCTCACAATTTCCTTCCTTTTTTTTTTTTTTCGCCTGACAGTACTTTTGCTTCGC-AAATCAACTNGTGTGTATG-TGNTTGTATGTATTATGTATGTATGAATCAAATATGGAAGAGCACTCGTTGTTATATTTCTGAAATAAATAAAATGGAGACTACTTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0236E02-u8qcS/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E298412" ref_strand="+" ref_description="SGN-E298412 [cLET-41-J24]">
      <seq>ggttcgtaacatcgccaacatggtccctgcttatgacaaggtcaggtactctggagtaggagcagccattgaatacgccgttcttcatcttaaggtggagaacatcgttgtcattggccacagtgcttgtggaggtatcaaaggtctcatgtcactacctgaagatggtagtgaatcaactgcctttattgaggattgggtaaaaatttgtttacctgccaaggcaaaggttctggccgatcacggagggaaagaatttgcacatcaatgcacagcttgtgagaaggaagctgtgaacgtttcacttggaaatctgcttacgtatccattcgtgagagaaggattggtgaagaaaacattggcattgaagggaggttactatgatttcgtgaagggtggatttgagctgtggggacttgagttcggtctttctcctcctctttccgtatgaacttaattcaattaccatttggccctcacaatttccttcctttttttttttttcgcct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0236E02-u8qcS/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0236E02.1" temp_strand="+" temp_description="C02HBa0236E02.1  AC215430.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0236E02 sequenced_by:kribb upload_account_name:korea">
        <position start="16966" stop="18316"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="17266" g_stop="17305" g_length="40"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="40" r_length="40" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="17306" i_stop="17390" i_length="85">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.979" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="17391" g_stop="17530" g_length="140"/>
          <reference_exon_boundary r_type="cDNA" r_start="41" r_stop="180" r_length="140" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="17531" i_stop="17607" i_length="77">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.948" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="17608" g_stop="17713" g_length="106"/>
          <reference_exon_boundary r_type="cDNA" r_start="181" r_stop="286" r_length="106" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="17714" i_stop="17793" i_length="80">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="17794" g_stop="18016" g_length="223"/>
          <reference_exon_boundary r_type="cDNA" r_start="287" r_stop="509" r_length="223" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0236E02.1" gen_strand="+" ref_id="SGN-E298412" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>509</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0236E02.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E298412" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="17266" e_stop="17305"/>
          <exon e_start="17391" e_stop="17530"/>
          <exon e_start="17608" e_stop="17713"/>
          <exon e_start="17794" e_stop="18016"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGTTCGTAACATCGCCAACATGGTCCCTGCTTATGACAAGGTCAGTTACAAATCGATCAACTAGTCGATTATTTCGCTCTGGAATTGTGTTTTTTAAAAATAAAGATGGAATTGAATTTTTACAGGTCAGGTACTCTGGAGTAGGAGCAGCCATTGAATACGCCGTTCTTCATCTTAAGGTGGAGAACATCGTTGTCATTGGCCACAGTGCTTGTGGAGGTATCAAAGGTCTCATGTCACTACCTGAAGATGGTAGTGAATCAACGTACGTCACTCTATAAATCTATTCATTCAAAACACTTATCCTTAACAGATGATTGATTAATAATCTAATATACGCAGTGCCTTTATTGAGGATTGGGTAAAAATTTGTTTACCTGCCAAGGCAAAGGTTCTGGCCGATCACGGAGGGAAAGAATTTGCACATCAATGCACAGCTTGTGAGAAGGTAAAATTCAAATTTAACTTTTTGATTATCAATTAATTACATATATAGCAGTATTTTATAATTGATGAAAAATGTTGCAGGAAGCTGTGAACGTTTCACTTGGAAATCTGCTTACGTATCCATTCGTGAGAGAAGGATTGGTGAAGAAAACATTGGCATTGAAGGGAGGTTACTATGATTTCGTGAAGGGTGGATTTGAGCTGTGGGGACTTGAGTTCGGTCTTTCTCCTCCTCTTTCCGTATGAACTTAATTCAATTACCATTTGGCCCTCACAATTTCCTTCCTTTTTTTTTTTTTCGCCT</genome_strand>
        <mrna_strand>GGTTCGTAACATCGCCAACATGGTCCCTGCTTATGACAAG.....................................................................................GTCAGGTACTCTGGAGTAGGAGCAGCCATTGAATACGCCGTTCTTCATCTTAAGGTGGAGAACATCGTTGTCATTGGCCACAGTGCTTGTGGAGGTATCAAAGGTCTCATGTCACTACCTGAAGATGGTAGTGAATCAAC.............................................................................TGCCTTTATTGAGGATTGGGTAAAAATTTGTTTACCTGCCAAGGCAAAGGTTCTGGCCGATCACGGAGGGAAAGAATTTGCACATCAATGCACAGCTTGTGAGAAG................................................................................GAAGCTGTGAACGTTTCACTTGGAAATCTGCTTACGTATCCATTCGTGAGAGAAGGATTGGTGAAGAAAACATTGGCATTGAAGGGAGGTTACTATGATTTCGTGAAGGGTGGATTTGAGCTGTGGGGACTTGAGTTCGGTCTTTCTCCTCCTCTTTCCGTATGAACTTAATTCAATTACCATTTGGCCCTCACAATTTCCTTCCTTTTTTTTTTTTTCGCCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0236E02-u8qcS/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E733936" ref_strand="+" ref_description="SGN-E733936 [LB11BD06]">
      <seq>cgtaacatcgccaacatggtccctgcttatgacaaggtcaggtactctggagtaggagcagccattgaatacgccgttcttcatcttaaggtggagaacatcgttgtcattggccacagtgcttgtggaggtatcaaaggtctcatgtcactacctgaagatggtagtgaatcaactgcctttattgaggattgggtaaaaatttgtttacctgccaaggcaaaggttctggccgatcacggagggaaagaatttgcacatcaatgcacagcttgtgagaaggaagctgtgaacgtttcacttggaaatctgcttacgtatccattcgtgagagaaggattggtgaagaaaacattggcattgaagggaggttactatgatttcgtgaagggtggatttgagctgtggggacttgagttcggtctttctcctcctctttccgtatgaacttaattcaattaccatttggccctcacaatttccttcctttttttttttttcccctgacagaacttttgcttcccaaaatcaactgggggaatgttgtttgaatgtattatgaatgaatgaatcaaatatggaaaacccctcgttgtcatatttctgaaataaataaaatggaaactactttttgtttnagaaaaaaaaaaaaaaaaacaaaaanaaaatccggggggggggccgggccccttttcccc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0236E02-u8qcS/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0236E02.1" temp_strand="+" temp_description="C02HBa0236E02.1  AC215430.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0236E02 sequenced_by:kribb upload_account_name:korea">
        <position start="16970" stop="95704"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="17270" g_stop="17305" g_length="36"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="36" r_length="36" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="17306" i_stop="17390" i_length="85">
            <donor d_prob="0.999" d_score="0.00"/>
            <acceptor a_prob="0.979" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="17391" g_stop="17530" g_length="140"/>
          <reference_exon_boundary r_type="cDNA" r_start="37" r_stop="176" r_length="140" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="17531" i_stop="17607" i_length="77">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.948" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="17608" g_stop="17713" g_length="106"/>
          <reference_exon_boundary r_type="cDNA" r_start="177" r_stop="282" r_length="106" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="17714" i_stop="17793" i_length="80">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="17794" g_stop="18154" g_length="361"/>
          <reference_exon_boundary r_type="cDNA" r_start="283" r_stop="643" r_length="361" r_score="0.947"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="18155" i_stop="18515" i_length="361">
            <donor d_prob="0.000" d_score="0.86"/>
            <acceptor a_prob="0.000" a_score="0.54"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="18516" g_stop="18571" g_length="56"/>
          <reference_exon_boundary r_type="cDNA" r_start="644" r_stop="698" r_length="55" r_score="0.518"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0236E02.1" gen_strand="+" ref_id="SGN-E733936" ref_strand="+">
        <total_alignment_score>0.931</total_alignment_score>
        <cumulative_length_of_scored_exons>699</cumulative_length_of_scored_exons>
        <coverage percentage="1.001" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0236E02.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E733936" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="17270" e_stop="17305"/>
          <exon e_start="17391" e_stop="17530"/>
          <exon e_start="17608" e_stop="17713"/>
          <exon e_start="17794" e_stop="18154"/>
          <exon e_start="18516" e_stop="18571"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CGTAACATCGCCAACATGGTCCCTGCTTATGACAAGGTCAGTTACAAATCGATCAACTAGTCGATTATTTCGCTCTGGAATTGTGTTTTTTAAAAATAAAGATGGAATTGAATTTTTACAGGTCAGGTACTCTGGAGTAGGAGCAGCCATTGAATACGCCGTTCTTCATCTTAAGGTGGAGAACATCGTTGTCATTGGCCACAGTGCTTGTGGAGGTATCAAAGGTCTCATGTCACTACCTGAAGATGGTAGTGAATCAACGTACGTCACTCTATAAATCTATTCATTCAAAACACTTATCCTTAACAGATGATTGATTAATAATCTAATATACGCAGTGCCTTTATTGAGGATTGGGTAAAAATTTGTTTACCTGCCAAGGCAAAGGTTCTGGCCGATCACGGAGGGAAAGAATTTGCACATCAATGCACAGCTTGTGAGAAGGTAAAATTCAAATTTAACTTTTTGATTATCAATTAATTACATATATAGCAGTATTTTATAATTGATGAAAAATGTTGCAGGAAGCTGTGAACGTTTCACTTGGAAATCTGCTTACGTATCCATTCGTGAGAGAAGGATTGGTGAAGAAAACATTGGCATTGAAGGGAGGTTACTATGATTTCGTGAAGGGTGGATTTGAGCTGTGGGGACTTGAGTTCGGTCTTTCTCCTCCTCTTTCCGTATGAACTTAATTCAATTACCATTTGGCCCTCACAATTTCCTTCCTTTTTTTTTTTTTCGCCTGACAGTACTTTTGCTTCGCAAAATCAACTGTGTGTATGTTGTTTGTATGTATTATGTATGTATGAATCAAATATGGAAGAGCACTCGTTGTTATATTTCTGAAATAAATAAAATGGAGACTACTTTTTGTATAAATACGTTTGTGGTGGGCTTTGGTAGGTAAAAGATGTGGCCAGTATACTGCACTGGAAGCTCATGTAGAGACAGAGAGATCGTCAAGCAACAAGAGGATTCCCAGATTTAATCTGTTATTCTTGCTCATGTAGACCAAAAATTGGCCATAATAATCTACAAACACTCTTTTCGGCTACAATTATACTAGTTTAACTTTCCATGATGCTTCTCTCATTTGTTAGTGTCAGACAACAATCCATTACAAAGCGGAAAATTTGTCTTAGTTTGCAAATCCTTTCAAGAGATTTAGGGTTCCACTCTAAAATGGGAAAGTTCGAATAAGTTGAAGCTAATGGATTGGGAATACCAAATGGAGTAATAATCTATATAAGAAAAAAAAAAGAAGCAAATCACCATGGAATATTAAAGACAGTTCTCATA</genome_strand>
        <mrna_strand>CGTAACATCGCCAACATGGTCCCTGCTTATGACAAG.....................................................................................GTCAGGTACTCTGGAGTAGGAGCAGCCATTGAATACGCCGTTCTTCATCTTAAGGTGGAGAACATCGTTGTCATTGGCCACAGTGCTTGTGGAGGTATCAAAGGTCTCATGTCACTACCTGAAGATGGTAGTGAATCAAC.............................................................................TGCCTTTATTGAGGATTGGGTAAAAATTTGTTTACCTGCCAAGGCAAAGGTTCTGGCCGATCACGGAGGGAAAGAATTTGCACATCAATGCACAGCTTGTGAGAAG................................................................................GAAGCTGTGAACGTTTCACTTGGAAATCTGCTTACGTATCCATTCGTGAGAGAAGGATTGGTGAAGAAAACATTGGCATTGAAGGGAGGTTACTATGATTTCGTGAAGGGTGGATTTGAGCTGTGGGGACTTGAGTTCGGTCTTTCTCCTCCTCTTTCCGTATGAACTTAATTCAATTACCATTTGGCCCTCACAATTTCCTTCCTTTTTTTTTTTTTCCCCTGACAGAACTTTTGCTTCCCAAAATCAACTGGGGGAATGTTGTTTGAATGTATTATGAATGAATGAATCAAATATGGAAAACCCCTCGTTGTCATATTTCTGAAATAAATAAAATGGAAACTACTTTTTGTTTNAGAAA.........................................................................................................................................................................................................................................................................................................................................................................AAAAAAAAAAAAAACAAAAANAAAATC-CGGGGGGGGGGCCGGGCCCCTTTTCCCC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0236E02-u8qcS/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E733939" ref_strand="+" ref_description="SGN-E733939 [LB11BD09]">
      <seq>cgtaacatcgccaacatggtccctgcttatgacaaggtcaggtactctggagtaggagcagccattgaatacgccgttcttcatcttaaggtggagaacatcgttgtcattggccacagtgcttgtggaggtatcaaaggtctcatgtcactacctgaagatggtagtgaatcaactgcctttattgaggattgggtaaaaatttgtttacctgccaaggcaaaggttctggccgatcacggagggaaagaatttgcacatcaatgcacagcttgtgagaaggaagctgtgaacgtttcacttggaaatctgcttacgtatccattcgtgagagaaggattggtgaagaaaacattggcattgaagggaggttactatgatttcgtgaagggtggatttgagctgtggggacttgagttcggtctttctcctcctctttccgtatgaacttaattcaattaccatttggccctcacaatttccttcctttttttttttttcccctgacagaacttttgcttcccaaaatcaactgggggaatgttgtttgaaggtattatgaatgtaggaaccaaatatggaaaaccactcgttgttatatttctgaaataaataaaagggaaactattttttgtttgggaaaaaacaaaaaaaaaaaaaaaacctcccccgggggggg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0236E02-u8qcS/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0236E02.1" temp_strand="+" temp_description="C02HBa0236E02.1  AC215430.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0236E02 sequenced_by:kribb upload_account_name:korea">
        <position start="16970" stop="78356"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="17270" g_stop="17305" g_length="36"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="36" r_length="36" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="17306" i_stop="17390" i_length="85">
            <donor d_prob="0.999" d_score="0.00"/>
            <acceptor a_prob="0.979" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="17391" g_stop="17530" g_length="140"/>
          <reference_exon_boundary r_type="cDNA" r_start="37" r_stop="176" r_length="140" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="17531" i_stop="17607" i_length="77">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.948" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="17608" g_stop="17713" g_length="106"/>
          <reference_exon_boundary r_type="cDNA" r_start="177" r_stop="282" r_length="106" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="17714" i_stop="17793" i_length="80">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="17794" g_stop="18150" g_length="357"/>
          <reference_exon_boundary r_type="cDNA" r_start="283" r_stop="639" r_length="357" r_score="0.947"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="18151" i_stop="18514" i_length="364">
            <donor d_prob="0.000" d_score="0.88"/>
            <acceptor a_prob="0.000" a_score="0.57"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="18515" g_stop="18554" g_length="40"/>
          <reference_exon_boundary r_type="cDNA" r_start="640" r_stop="679" r_length="40" r_score="0.575"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0236E02.1" gen_strand="+" ref_id="SGN-E733939" ref_strand="+">
        <total_alignment_score>0.968</total_alignment_score>
        <cumulative_length_of_scored_exons>679</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0236E02.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E733939" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="17270" e_stop="17305"/>
          <exon e_start="17391" e_stop="17530"/>
          <exon e_start="17608" e_stop="17713"/>
          <exon e_start="17794" e_stop="18150"/>
          <exon e_start="18515" e_stop="18554"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CGTAACATCGCCAACATGGTCCCTGCTTATGACAAGGTCAGTTACAAATCGATCAACTAGTCGATTATTTCGCTCTGGAATTGTGTTTTTTAAAAATAAAGATGGAATTGAATTTTTACAGGTCAGGTACTCTGGAGTAGGAGCAGCCATTGAATACGCCGTTCTTCATCTTAAGGTGGAGAACATCGTTGTCATTGGCCACAGTGCTTGTGGAGGTATCAAAGGTCTCATGTCACTACCTGAAGATGGTAGTGAATCAACGTACGTCACTCTATAAATCTATTCATTCAAAACACTTATCCTTAACAGATGATTGATTAATAATCTAATATACGCAGTGCCTTTATTGAGGATTGGGTAAAAATTTGTTTACCTGCCAAGGCAAAGGTTCTGGCCGATCACGGAGGGAAAGAATTTGCACATCAATGCACAGCTTGTGAGAAGGTAAAATTCAAATTTAACTTTTTGATTATCAATTAATTACATATATAGCAGTATTTTATAATTGATGAAAAATGTTGCAGGAAGCTGTGAACGTTTCACTTGGAAATCTGCTTACGTATCCATTCGTGAGAGAAGGATTGGTGAAGAAAACATTGGCATTGAAGGGAGGTTACTATGATTTCGTGAAGGGTGGATTTGAGCTGTGGGGACTTGAGTTCGGTCTTTCTCCTCCTCTTTCCGTATGAACTTAATTCAATTACCATTTGGCCCTCACAATTTCCTTCCTTTTTTTTTTTTTCGCCTGACAGTACTTTTGCTTCGCAAAATCAACTGTGTGTATGTTGTTTGTATGTATTATGTATGTATGAATCAAATATGGAAGAGCACTCGTTGTTATATTTCTGAAATAAATAAAATGGAGACTACTTTTTGTATAAATACGTTTGTGGTGGGCTTTGGTAGGTAAAAGATGTGGCCAGTATACTGCACTGGAAGCTCATGTAGAGACAGAGAGATCGTCAAGCAACAAGAGGATTCCCAGATTTAATCTGTTATTCTTGCTCATGTAGACCAAAAATTGGCCATAATAATCTACAAACACTCTTTTCGGCTACAATTATACTAGTTTAACTTTCCATGATGCTTCTCTCATTTGTTAGTGTCAGACAACAATCCATTACAAAGCGGAAAATTTGTCTTAGTTTGCAAATCCTTTCAAGAGATTTAGGGTTCCACTCTAAAATGGGAAAGTTCGAATAAGTTGAAGCTAATGGATTGGGAATACCAAATGGAGTAATAATCTATATAAGAAAAAAAAAAGAAGCAAATCACCATGGAATAT</genome_strand>
        <mrna_strand>CGTAACATCGCCAACATGGTCCCTGCTTATGACAAG.....................................................................................GTCAGGTACTCTGGAGTAGGAGCAGCCATTGAATACGCCGTTCTTCATCTTAAGGTGGAGAACATCGTTGTCATTGGCCACAGTGCTTGTGGAGGTATCAAAGGTCTCATGTCACTACCTGAAGATGGTAGTGAATCAAC.............................................................................TGCCTTTATTGAGGATTGGGTAAAAATTTGTTTACCTGCCAAGGCAAAGGTTCTGGCCGATCACGGAGGGAAAGAATTTGCACATCAATGCACAGCTTGTGAGAAG................................................................................GAAGCTGTGAACGTTTCACTTGGAAATCTGCTTACGTATCCATTCGTGAGAGAAGGATTGGTGAAGAAAACATTGGCATTGAAGGGAGGTTACTATGATTTCGTGAAGGGTGGATTTGAGCTGTGGGGACTTGAGTTCGGTCTTTCTCCTCCTCTTTCCGTATGAACTTAATTCAATTACCATTTGGCCCTCACAATTTCCTTCCTTTTTTTTTTTTTCCCCTGACAGAACTTTTGCTTCCCAAAATCAACTGGGGGAATGTTGTTTGAAGGTATTATGAATGTAGGAACCAAATATGGAAAACCACTCGTTGTTATATTTCTGAAATAAATAAAAGGGAAACTATTTTTTGTTTGG............................................................................................................................................................................................................................................................................................................................................................................GAAAAAACAAAAAAAAAAAAAAAACCTCCCCCGGGGGGGG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0236E02-u8qcS/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E725665" ref_strand="-" ref_description="SGN-E725665 [LA05AE01]">
      <seq>gccaacatggtccctgcttatgacaaggtcaggtactctggagtaggagcagccattgaatacgccgttcttcatcttaaggtggagaacatcgttgtcattggccacagtgcttgtggaggtatcaaaggtctcatgtcactcctgcagcccggggg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0236E02-u8qcS/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0236E02.1" temp_strand="+" temp_description="C02HBa0236E02.1  AC215430.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0236E02 sequenced_by:kribb upload_account_name:korea">
        <position start="16979" stop="17814"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="17279" g_stop="17305" g_length="27"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="27" r_length="27" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="17306" i_stop="17390" i_length="85">
            <donor d_prob="0.999" d_score="0.00"/>
            <acceptor a_prob="0.979" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="17391" g_stop="17517" g_length="127"/>
          <reference_exon_boundary r_type="cDNA" r_start="28" r_stop="153" r_length="126" r_score="0.961"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="17518" i_stop="17793" i_length="276">
            <donor d_prob="0.959" d_score="0.90"/>
            <acceptor a_prob="0.997" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="17794" g_stop="17798" g_length="5"/>
          <reference_exon_boundary r_type="cDNA" r_start="154" r_stop="158" r_length="5" r_score="0.400"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0236E02.1" gen_strand="+" ref_id="SGN-E725665" ref_strand="-">
        <total_alignment_score>0.961</total_alignment_score>
        <cumulative_length_of_scored_exons>159</cumulative_length_of_scored_exons>
        <coverage percentage="1.006" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0236E02.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E725665" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="17279" e_stop="17305"/>
          <exon e_start="17391" e_stop="17517"/>
          <exon e_start="17794" e_stop="17798"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCCAACATGGTCCCTGCTTATGACAAGGTCAGTTACAAATCGATCAACTAGTCGATTATTTCGCTCTGGAATTGTGTTTTTTAAAAATAAAGATGGAATTGAATTTTTACAGGTCAGGTACTCTGGAGTAGGAGCAGCCATTGAATACGCCGTTCTTCATCTTAAGGTGGAGAACATCGTTGTCATTGGCCACAGTGCTTGTGGAGGTATCAAAGGTCTCATGTCACTACCTGAAGATGGTAGTGAATCAACGTACGTCACTCTATAAATCTATTCATTCAAAACACTTATCCTTAACAGATGATTGATTAATAATCTAATATACGCAGTGCCTTTATTGAGGATTGGGTAAAAATTTGTTTACCTGCCAAGGCAAAGGTTCTGGCCGATCACGGAGGGAAAGAATTTGCACATCAATGCACAGCTTGTGAGAAGGTAAAATTCAAATTTAACTTTTTGATTATCAATTAATTACATATATAGCAGTATTTTATAATTGATGAAAAATGTTGCAGGAAGC</genome_strand>
        <mrna_strand>GCCAACATGGTCCCTGCTTATGACAAG.....................................................................................GTCAGGTACTCTGGAGTAGGAGCAGCCATTGAATACGCCGTTCTTCATCTTAAGGTGGAGAACATCGTTGTCATTGGCCACAGTGCTTGTGGAGGTATCAAAGGTCTCATGTCACT-CCTGCAGCCC....................................................................................................................................................................................................................................................................................GGGGG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0236E02-u8qcS/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E370485" ref_strand="+" ref_description="SGN-E370485 [TUS-29-E7](-)">
      <seq>ccaacatggtccctgcttattacaaggtcaggtactctggaagtagaagcagccattgaataccccgtttttcattttaaggtggagaacatcgttgtcattggccacagtgcttgtggaggtatcaaaggtctcatgtccctacctgaaaatggtagtgaatcaactgcctttattgaggattgggtaaaaatttgtttacctgccaaggcaaaggttttggccgatcacggaaggaaaaaatttgcacatcaatgcacagcttgtgaaaaagaaactgtgaacgtttcacttggaaatctgcttacgtatccattcgtgaaagaaggattggtgaaaaaaacattggcattgaaaggaggttactatgatttcgtgaagggtggatttgaactgtggggacttgagttcggtctttttcctcctctttccgtatgaacttaattcaattaccatttggccctcacaatttccttccttttttttttttcgcctgacagtacttttgcttcgcaaaatcaactgtgtgtatgttgtttgtatgtattatgtatgtatgaatctgttgaatgccttaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0236E02-u8qcS/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0236E02.1" temp_strand="+" temp_description="C02HBa0236E02.1  AC215430.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0236E02 sequenced_by:kribb upload_account_name:korea">
        <position start="16980" stop="95694"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="17280" g_stop="17305" g_length="26"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="26" r_length="26" r_score="0.962"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="17306" i_stop="17390" i_length="85">
            <donor d_prob="0.999" d_score="0.00"/>
            <acceptor a_prob="0.979" a_score="0.88"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="17391" g_stop="17530" g_length="140"/>
          <reference_exon_boundary r_type="cDNA" r_start="27" r_stop="167" r_length="141" r_score="0.943"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="17531" i_stop="17607" i_length="77">
            <donor d_prob="0.999" d_score="0.96"/>
            <acceptor a_prob="0.948" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="17608" g_stop="17713" g_length="106"/>
          <reference_exon_boundary r_type="cDNA" r_start="168" r_stop="273" r_length="106" r_score="0.953"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="17714" i_stop="17793" i_length="80">
            <donor d_prob="1.000" d_score="0.92"/>
            <acceptor a_prob="0.997" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="17794" g_stop="18088" g_length="295"/>
          <reference_exon_boundary r_type="cDNA" r_start="274" r_stop="567" r_length="294" r_score="0.966"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="18089" i_stop="18506" i_length="418">
            <donor d_prob="0.000" d_score="0.94"/>
            <acceptor a_prob="0.000" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="18507" g_stop="18534" g_length="28"/>
          <reference_exon_boundary r_type="cDNA" r_start="568" r_stop="595" r_length="28" r_score="0.679"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0236E02.1" gen_strand="+" ref_id="SGN-E370485" ref_strand="+">
        <total_alignment_score>0.957</total_alignment_score>
        <cumulative_length_of_scored_exons>595</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0236E02.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E370485" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="17280" e_stop="17305"/>
          <exon e_start="17391" e_stop="17530"/>
          <exon e_start="17608" e_stop="17713"/>
          <exon e_start="17794" e_stop="18088"/>
          <exon e_start="18507" e_stop="18534"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCAACATGGTCCCTGCTTATGACAAGGTCAGTTACAAATCGATCAACTAGTCGATTATTTCGCTCTGGAATTGTGTTTTTTAAAAATAAAGATGGAATTGAATTTTTACAGGTCAGGTACTCTGG-AGTAGGAGCAGCCATTGAATACGCCGTTCTTCATCTTAAGGTGGAGAACATCGTTGTCATTGGCCACAGTGCTTGTGGAGGTATCAAAGGTCTCATGTCACTACCTGAAGATGGTAGTGAATCAACGTACGTCACTCTATAAATCTATTCATTCAAAACACTTATCCTTAACAGATGATTGATTAATAATCTAATATACGCAGTGCCTTTATTGAGGATTGGGTAAAAATTTGTTTACCTGCCAAGGCAAAGGTTCTGGCCGATCACGGAGGGAAAGAATTTGCACATCAATGCACAGCTTGTGAGAAGGTAAAATTCAAATTTAACTTTTTGATTATCAATTAATTACATATATAGCAGTATTTTATAATTGATGAAAAATGTTGCAGGAAGCTGTGAACGTTTCACTTGGAAATCTGCTTACGTATCCATTCGTGAGAGAAGGATTGGTGAAGAAAACATTGGCATTGAAGGGAGGTTACTATGATTTCGTGAAGGGTGGATTTGAGCTGTGGGGACTTGAGTTCGGTCTTTCTCCTCCTCTTTCCGTATGAACTTAATTCAATTACCATTTGGCCCTCACAATTTCCTTCCTTTTTTTTTTTTTCGCCTGACAGTACTTTTGCTTCGCAAAATCAACTGTGTGTATGTTGTTTGTATGTATTATGTATGTATGAATCAAATATGGAAGAGCACTCGTTGTTATATTTCTGAAATAAATAAAATGGAGACTACTTTTTGTATAAATACGTTTGTGGTGGGCTTTGGTAGGTAAAAGATGTGGCCAGTATACTGCACTGGAAGCTCATGTAGAGACAGAGAGATCGTCAAGCAACAAGAGGATTCCCAGATTTAATCTGTTATTCTTGCTCATGTAGACCAAAAATTGGCCATAATAATCTACAAACACTCTTTTCGGCTACAATTATACTAGTTTAACTTTCCATGATGCTTCTCTCATTTGTTAGTGTCAGACAACAATCCATTACAAAGCGGAAAATTTGTCTTAGTTTGCAAATCCTTTCAAGAGATTTAGGGTTCCACTCTAAAATGGGAAAGTTCGAATAAGTTGAAGCTAATGGATTGGGAATACCAAATGGAGTAATAATCTATATAAGAAAAAAAAAAGA</genome_strand>
        <mrna_strand>CCAACATGGTCCCTGCTTATTACAAG.....................................................................................GTCAGGTACTCTGGAAGTAGAAGCAGCCATTGAATACCCCGTTTTTCATTTTAAGGTGGAGAACATCGTTGTCATTGGCCACAGTGCTTGTGGAGGTATCAAAGGTCTCATGTCCCTACCTGAAAATGGTAGTGAATCAAC.............................................................................TGCCTTTATTGAGGATTGGGTAAAAATTTGTTTACCTGCCAAGGCAAAGGTTTTGGCCGATCACGGAAGGAAAAAATTTGCACATCAATGCACAGCTTGTGAAAAA................................................................................GAAACTGTGAACGTTTCACTTGGAAATCTGCTTACGTATCCATTCGTGAAAGAAGGATTGGTGAAAAAAACATTGGCATTGAAAGGAGGTTACTATGATTTCGTGAAGGGTGGATTTGAACTGTGGGGACTTGAGTTCGGTCTTTTTCCTCCTCTTTCCGTATGAACTTAATTCAATTACCATTTGGCCCTCACAATTTCCTTCC-TTTTTTTTTTTTCGCCTGACAGTACTTTTGCTTCGCAAAATCAACTGTGTGTATGTTGTTTGTATGTATTATGTATGTATGAATCTGTT..................................................................................................................................................................................................................................................................................................................................................................................................................................GAATGCCTTAAAAAAAAAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0236E02-u8qcS/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E734692" ref_strand="+" ref_description="SGN-E734692 [LB13BD04]">
      <seq>gtccctgcttatgacaaggtcaggtactctggagtaggagcagccattgaatacgccgttcttcatcttaaggtggagaacatcgttgtcattggccacagtgcttgtggaggtatcaaaggtctcatgtcactacctgaagatggtagtgaatcaactgcctttattgaggattgggtaaaaatttgtttacctgccaaggcaaaggttctggccgatcacggagggaaagaatttgcacatcaatgcacagcttgtgagaaggaagctgtgaacgtttcacttggaaatctgcttacgtatccattcgtgagagaaggattggtgaagaaaacattggcattgaagggaggttactatgatttcgtgaaggctggatttgagctgtggggacttgagttcggtctttctcctcctctttccgtatgaacttaattcaattaccatttggccctcacaatttccttcctttttttttttttccccggcaagaatttttgtttcccaaaatcaactgggggaatgtggtttgaatgtattatgtatgtataaatcaaatatggaaaagccctcgttgttatatttctgaaataaataaaatggaaactactttttgtataaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0236E02-u8qcS/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0236E02.1" temp_strand="+" temp_description="C02HBa0236E02.1  AC215430.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0236E02 sequenced_by:kribb upload_account_name:korea">
        <position start="16988" stop="18453"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="17288" g_stop="17305" g_length="18"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="18" r_length="18" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="17306" i_stop="17390" i_length="85">
            <donor d_prob="0.999" d_score="0.00"/>
            <acceptor a_prob="0.979" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="17391" g_stop="17530" g_length="140"/>
          <reference_exon_boundary r_type="cDNA" r_start="19" r_stop="158" r_length="140" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="17531" i_stop="17607" i_length="77">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.948" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="17608" g_stop="17713" g_length="106"/>
          <reference_exon_boundary r_type="cDNA" r_start="159" r_stop="264" r_length="106" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="17714" i_stop="17793" i_length="80">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="17794" g_stop="18157" g_length="364"/>
          <reference_exon_boundary r_type="cDNA" r_start="265" r_stop="628" r_length="364" r_score="0.937"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0236E02.1" gen_strand="+" ref_id="SGN-E734692" ref_strand="+">
        <total_alignment_score>0.962</total_alignment_score>
        <cumulative_length_of_scored_exons>628</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0236E02.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E734692" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="17288" e_stop="17305"/>
          <exon e_start="17391" e_stop="17530"/>
          <exon e_start="17608" e_stop="17713"/>
          <exon e_start="17794" e_stop="18157"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTCCCTGCTTATGACAAGGTCAGTTACAAATCGATCAACTAGTCGATTATTTCGCTCTGGAATTGTGTTTTTTAAAAATAAAGATGGAATTGAATTTTTACAGGTCAGGTACTCTGGAGTAGGAGCAGCCATTGAATACGCCGTTCTTCATCTTAAGGTGGAGAACATCGTTGTCATTGGCCACAGTGCTTGTGGAGGTATCAAAGGTCTCATGTCACTACCTGAAGATGGTAGTGAATCAACGTACGTCACTCTATAAATCTATTCATTCAAAACACTTATCCTTAACAGATGATTGATTAATAATCTAATATACGCAGTGCCTTTATTGAGGATTGGGTAAAAATTTGTTTACCTGCCAAGGCAAAGGTTCTGGCCGATCACGGAGGGAAAGAATTTGCACATCAATGCACAGCTTGTGAGAAGGTAAAATTCAAATTTAACTTTTTGATTATCAATTAATTACATATATAGCAGTATTTTATAATTGATGAAAAATGTTGCAGGAAGCTGTGAACGTTTCACTTGGAAATCTGCTTACGTATCCATTCGTGAGAGAAGGATTGGTGAAGAAAACATTGGCATTGAAGGGAGGTTACTATGATTTCGTGAAGGGTGGATTTGAGCTGTGGGGACTTGAGTTCGGTCTTTCTCCTCCTCTTTCCGTATGAACTTAATTCAATTACCATTTGGCCCTCACAATTTCCTTCCTTTTTTTTTTTTTCGCCTGACAGTACTTTTGCTTCGCAAAATCAACTGTGTGTATGTTGTTTGTATGTATTATGTATGTATGAATCAAATATGGAAGAGCACTCGTTGTTATATTTCTGAAATAAATAAAATGGAGACTACTTTTTGTATAAATACGTT</genome_strand>
        <mrna_strand>GTCCCTGCTTATGACAAG.....................................................................................GTCAGGTACTCTGGAGTAGGAGCAGCCATTGAATACGCCGTTCTTCATCTTAAGGTGGAGAACATCGTTGTCATTGGCCACAGTGCTTGTGGAGGTATCAAAGGTCTCATGTCACTACCTGAAGATGGTAGTGAATCAAC.............................................................................TGCCTTTATTGAGGATTGGGTAAAAATTTGTTTACCTGCCAAGGCAAAGGTTCTGGCCGATCACGGAGGGAAAGAATTTGCACATCAATGCACAGCTTGTGAGAAG................................................................................GAAGCTGTGAACGTTTCACTTGGAAATCTGCTTACGTATCCATTCGTGAGAGAAGGATTGGTGAAGAAAACATTGGCATTGAAGGGAGGTTACTATGATTTCGTGAAGGCTGGATTTGAGCTGTGGGGACTTGAGTTCGGTCTTTCTCCTCCTCTTTCCGTATGAACTTAATTCAATTACCATTTGGCCCTCACAATTTCCTTCCTTTTTTTTTTTTTCCCCGGCAAGAATTTTTGTTTCCCAAAATCAACTGGGGGAATGTGGTTTGAATGTATTATGTATGTATAAATCAAATATGGAAAAGCCCTCGTTGTTATATTTCTGAAATAAATAAAATGGAAACTACTTTTTGTATAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0236E02-u8qcS/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E291385" ref_strand="+" ref_description="SGN-E291385 [cLET-2-D6]">
      <seq>tactctggagtaggagcagccattgaatacgccgttcttcatcttaaggtggagaacatcgttgtcattggccacagtgcttgtggaggtatcaaaggtctcatgtcactacctgaagatggtagtgaatcaactgcctttattgaggattgggtaaaaatttgtttacctgccaaggcaaaggttctggccgatcacggagggaaagaatttgcacatcaatgcacagcttgtgagaaggaagctgtgaacgtttcacttggaaatctgcttacgtatccattcgtgagagaaggattggtgaagaaaacattggcattgaagggaggttactatgatttcttgaagggtggatttgagctgtggggacttgagttcg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0236E02-u8qcS/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0236E02.1" temp_strand="+" temp_description="C02HBa0236E02.1  AC215430.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0236E02 sequenced_by:kribb upload_account_name:korea">
        <position start="17097" stop="18232"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="17397" g_stop="17530" g_length="134"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="134" r_length="134" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="17531" i_stop="17607" i_length="77">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.948" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="17608" g_stop="17713" g_length="106"/>
          <reference_exon_boundary r_type="cDNA" r_start="135" r_stop="240" r_length="106" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="17714" i_stop="17793" i_length="80">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="17794" g_stop="17932" g_length="139"/>
          <reference_exon_boundary r_type="cDNA" r_start="241" r_stop="379" r_length="139" r_score="0.993"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0236E02.1" gen_strand="+" ref_id="SGN-E291385" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>379</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0236E02.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E291385" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="17397" e_stop="17530"/>
          <exon e_start="17608" e_stop="17713"/>
          <exon e_start="17794" e_stop="17932"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TACTCTGGAGTAGGAGCAGCCATTGAATACGCCGTTCTTCATCTTAAGGTGGAGAACATCGTTGTCATTGGCCACAGTGCTTGTGGAGGTATCAAAGGTCTCATGTCACTACCTGAAGATGGTAGTGAATCAACGTACGTCACTCTATAAATCTATTCATTCAAAACACTTATCCTTAACAGATGATTGATTAATAATCTAATATACGCAGTGCCTTTATTGAGGATTGGGTAAAAATTTGTTTACCTGCCAAGGCAAAGGTTCTGGCCGATCACGGAGGGAAAGAATTTGCACATCAATGCACAGCTTGTGAGAAGGTAAAATTCAAATTTAACTTTTTGATTATCAATTAATTACATATATAGCAGTATTTTATAATTGATGAAAAATGTTGCAGGAAGCTGTGAACGTTTCACTTGGAAATCTGCTTACGTATCCATTCGTGAGAGAAGGATTGGTGAAGAAAACATTGGCATTGAAGGGAGGTTACTATGATTTCGTGAAGGGTGGATTTGAGCTGTGGGGACTTGAGTTCG</genome_strand>
        <mrna_strand>TACTCTGGAGTAGGAGCAGCCATTGAATACGCCGTTCTTCATCTTAAGGTGGAGAACATCGTTGTCATTGGCCACAGTGCTTGTGGAGGTATCAAAGGTCTCATGTCACTACCTGAAGATGGTAGTGAATCAAC.............................................................................TGCCTTTATTGAGGATTGGGTAAAAATTTGTTTACCTGCCAAGGCAAAGGTTCTGGCCGATCACGGAGGGAAAGAATTTGCACATCAATGCACAGCTTGTGAGAAG................................................................................GAAGCTGTGAACGTTTCACTTGGAAATCTGCTTACGTATCCATTCGTGAGAGAAGGATTGGTGAAGAAAACATTGGCATTGAAGGGAGGTTACTATGATTTCTTGAAGGGTGGATTTGAGCTGTGGGGACTTGAGTTCG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0236E02-u8qcS/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E285134" ref_strand="-" ref_description="SGN-E285134 [cLER-20-C6]">
      <seq>ctggagtaggagcagccattgaatacgccgtttttcatcttaaggtggagaacatcgttgtcattggccacagtgcttgtggaggtatcaaaggtctcatgtcactacctgaagatggtagtgaatcaactgcctttattgaggattgggtaaaaatttgtttacctgccaaggcaaaggttctggccgatcacggagggaaagaatttgcacatcaatgcacagcttgtgagaaggaagctgtgaacgtttcacttggaaatctgcttacgtatccattcgtgagagaaggattggtgaagaaaacattggcattgaagggaggttactatgatttcgtgaagggtggatttgagctgtggggacttgagttcggtctttctcctcctctttccgtatgaacttaattcaattaccatttggccctcacaatttccttccttttttttttttcgcctgacagtacttttgcttcgcaaaatcaactgtgtgtatgttgtttgtatgtattatgtatgtatgaatctgt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0236E02-u8qcS/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0236E02.1" temp_strand="+" temp_description="C02HBa0236E02.1  AC215430.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0236E02 sequenced_by:kribb upload_account_name:korea">
        <position start="17101" stop="18384"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="17401" g_stop="17530" g_length="130"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="130" r_length="130" r_score="0.992"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="17531" i_stop="17607" i_length="77">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.948" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="17608" g_stop="17713" g_length="106"/>
          <reference_exon_boundary r_type="cDNA" r_start="131" r_stop="236" r_length="106" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="17714" i_stop="17793" i_length="80">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="17794" g_stop="18087" g_length="294"/>
          <reference_exon_boundary r_type="cDNA" r_start="237" r_stop="529" r_length="293" r_score="0.986"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0236E02.1" gen_strand="+" ref_id="SGN-E285134" ref_strand="-">
        <total_alignment_score>0.991</total_alignment_score>
        <cumulative_length_of_scored_exons>530</cumulative_length_of_scored_exons>
        <coverage percentage="1.002" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0236E02.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E285134" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="17401" e_stop="17530"/>
          <exon e_start="17608" e_stop="17713"/>
          <exon e_start="17794" e_stop="18087"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTGGAGTAGGAGCAGCCATTGAATACGCCGTTCTTCATCTTAAGGTGGAGAACATCGTTGTCATTGGCCACAGTGCTTGTGGAGGTATCAAAGGTCTCATGTCACTACCTGAAGATGGTAGTGAATCAACGTACGTCACTCTATAAATCTATTCATTCAAAACACTTATCCTTAACAGATGATTGATTAATAATCTAATATACGCAGTGCCTTTATTGAGGATTGGGTAAAAATTTGTTTACCTGCCAAGGCAAAGGTTCTGGCCGATCACGGAGGGAAAGAATTTGCACATCAATGCACAGCTTGTGAGAAGGTAAAATTCAAATTTAACTTTTTGATTATCAATTAATTACATATATAGCAGTATTTTATAATTGATGAAAAATGTTGCAGGAAGCTGTGAACGTTTCACTTGGAAATCTGCTTACGTATCCATTCGTGAGAGAAGGATTGGTGAAGAAAACATTGGCATTGAAGGGAGGTTACTATGATTTCGTGAAGGGTGGATTTGAGCTGTGGGGACTTGAGTTCGGTCTTTCTCCTCCTCTTTCCGTATGAACTTAATTCAATTACCATTTGGCCCTCACAATTTCCTTCCTTTTTTTTTTTTTCGCCTGACAGTACTTTTGCTTCGCAAAATCAACTGTGTGTATGTTGTTTGTATGTATTATGTATGTATGAATCAAA</genome_strand>
        <mrna_strand>CTGGAGTAGGAGCAGCCATTGAATACGCCGTTTTTCATCTTAAGGTGGAGAACATCGTTGTCATTGGCCACAGTGCTTGTGGAGGTATCAAAGGTCTCATGTCACTACCTGAAGATGGTAGTGAATCAAC.............................................................................TGCCTTTATTGAGGATTGGGTAAAAATTTGTTTACCTGCCAAGGCAAAGGTTCTGGCCGATCACGGAGGGAAAGAATTTGCACATCAATGCACAGCTTGTGAGAAG................................................................................GAAGCTGTGAACGTTTCACTTGGAAATCTGCTTACGTATCCATTCGTGAGAGAAGGATTGGTGAAGAAAACATTGGCATTGAAGGGAGGTTACTATGATTTCGTGAAGGGTGGATTTGAGCTGTGGGGACTTGAGTTCGGTCTTTCTCCTCCTCTTTCCGTATGAACTTAATTCAATTACCATTTGGCCCTCACAATTTCCTTCC-TTTTTTTTTTTTCGCCTGACAGTACTTTTGCTTCGCAAAATCAACTGTGTGTATGTTGTTTGTATGTATTATGTATGTATGAATCTGT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0236E02-u8qcS/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E321065" ref_strand="-" ref_description="SGN-E321065 [cTOB-13-C3]">
      <seq>tcatcttaaggtggagaacatcgttgtcattggccacagtgcttgtggaggtatcaaaggtctcatgtcactacctgaagatggtagtgaatcaactgcctttattgaggattgggtaaaaatttgtttacctgccaaggcaaaggttctggccgatcacggagggaaagaatttgcacatcaatgcacagcttgtgagaaggaagctgtgaacgtttcacttggaaatctgcttacgtatccattcgtgagagaaggattggtgaagaaaacattggcattgaagggaggttactatgatttcgtgaagggtggatttgagctgtggggacttgagttcggtctttctcctcctctttccgtatgaacttaattcaattaccatttggccctcacaatttccttcctttttttttttttcgcctgacagtacttttgcttcgcaaaatcaactgtgtgtatgttgtttgtatgtattatgtatgtatgaatcaaatatggaagagcactcgttgttatatttctgaaataaataaaaaaaaaaaaaaaaaaaactcagacta</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0236E02-u8qcS/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0236E02.1" temp_strand="+" temp_description="C02HBa0236E02.1  AC215430.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0236E02 sequenced_by:kribb upload_account_name:korea">
        <position start="17135" stop="95696"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="17435" g_stop="17530" g_length="96"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="96" r_length="96" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="17531" i_stop="17607" i_length="77">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.948" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="17608" g_stop="17713" g_length="106"/>
          <reference_exon_boundary r_type="cDNA" r_start="97" r_stop="202" r_length="106" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="17714" i_stop="17793" i_length="80">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="17794" g_stop="18128" g_length="335"/>
          <reference_exon_boundary r_type="cDNA" r_start="203" r_stop="537" r_length="335" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="18129" i_stop="18522" i_length="394">
            <donor d_prob="0.000" d_score="1.00"/>
            <acceptor a_prob="0.000" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="18523" g_stop="18548" g_length="26"/>
          <reference_exon_boundary r_type="cDNA" r_start="538" r_stop="563" r_length="26" r_score="0.692"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0236E02.1" gen_strand="+" ref_id="SGN-E321065" ref_strand="-">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>563</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0236E02.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E321065" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="17435" e_stop="17530"/>
          <exon e_start="17608" e_stop="17713"/>
          <exon e_start="17794" e_stop="18128"/>
          <exon e_start="18523" e_stop="18548"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCATCTTAAGGTGGAGAACATCGTTGTCATTGGCCACAGTGCTTGTGGAGGTATCAAAGGTCTCATGTCACTACCTGAAGATGGTAGTGAATCAACGTACGTCACTCTATAAATCTATTCATTCAAAACACTTATCCTTAACAGATGATTGATTAATAATCTAATATACGCAGTGCCTTTATTGAGGATTGGGTAAAAATTTGTTTACCTGCCAAGGCAAAGGTTCTGGCCGATCACGGAGGGAAAGAATTTGCACATCAATGCACAGCTTGTGAGAAGGTAAAATTCAAATTTAACTTTTTGATTATCAATTAATTACATATATAGCAGTATTTTATAATTGATGAAAAATGTTGCAGGAAGCTGTGAACGTTTCACTTGGAAATCTGCTTACGTATCCATTCGTGAGAGAAGGATTGGTGAAGAAAACATTGGCATTGAAGGGAGGTTACTATGATTTCGTGAAGGGTGGATTTGAGCTGTGGGGACTTGAGTTCGGTCTTTCTCCTCCTCTTTCCGTATGAACTTAATTCAATTACCATTTGGCCCTCACAATTTCCTTCCTTTTTTTTTTTTTCGCCTGACAGTACTTTTGCTTCGCAAAATCAACTGTGTGTATGTTGTTTGTATGTATTATGTATGTATGAATCAAATATGGAAGAGCACTCGTTGTTATATTTCTGAAATAAATAAAATGGAGACTACTTTTTGTATAAATACGTTTGTGGTGGGCTTTGGTAGGTAAAAGATGTGGCCAGTATACTGCACTGGAAGCTCATGTAGAGACAGAGAGATCGTCAAGCAACAAGAGGATTCCCAGATTTAATCTGTTATTCTTGCTCATGTAGACCAAAAATTGGCCATAATAATCTACAAACACTCTTTTCGGCTACAATTATACTAGTTTAACTTTCCATGATGCTTCTCTCATTTGTTAGTGTCAGACAACAATCCATTACAAAGCGGAAAATTTGTCTTAGTTTGCAAATCCTTTCAAGAGATTTAGGGTTCCACTCTAAAATGGGAAAGTTCGAATAAGTTGAAGCTAATGGATTGGGAATACCAAATGGAGTAATAATCTATATAAGAAAAAAAAAAGAAGCAAATCACCATG</genome_strand>
        <mrna_strand>TCATCTTAAGGTGGAGAACATCGTTGTCATTGGCCACAGTGCTTGTGGAGGTATCAAAGGTCTCATGTCACTACCTGAAGATGGTAGTGAATCAAC.............................................................................TGCCTTTATTGAGGATTGGGTAAAAATTTGTTTACCTGCCAAGGCAAAGGTTCTGGCCGATCACGGAGGGAAAGAATTTGCACATCAATGCACAGCTTGTGAGAAG................................................................................GAAGCTGTGAACGTTTCACTTGGAAATCTGCTTACGTATCCATTCGTGAGAGAAGGATTGGTGAAGAAAACATTGGCATTGAAGGGAGGTTACTATGATTTCGTGAAGGGTGGATTTGAGCTGTGGGGACTTGAGTTCGGTCTTTCTCCTCCTCTTTCCGTATGAACTTAATTCAATTACCATTTGGCCCTCACAATTTCCTTCCTTTTTTTTTTTTTCGCCTGACAGTACTTTTGCTTCGCAAAATCAACTGTGTGTATGTTGTTTGTATGTATTATGTATGTATGAATCAAATATGGAAGAGCACTCGTTGTTATATTTCTGAAATAAATAAA..........................................................................................................................................................................................................................................................................................................................................................................................................AAAAAAAAAAAAAAAAACTCAGACTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0236E02-u8qcS/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E366177" ref_strand="+" ref_description="SGN-E366177 [cLPT-1-E15](-)">
      <seq>tcatcttaaggtggagaacatcgttgtcattggccacagtgcttgtggaggtatcaaaggtctcatgtcactacctgaagatggtagtgaatcaactgcctttattgaggattgggtgaaaatttgtttacctgccaaggcaaaggttctggccgatcacggagggaaagaatttgcacatcaatgcacagcttgtgagaaggaagctgtgaacgtttcacttggaaatctgcttacgtatccattcgtgagagaaggattggtgaagaaaacattggcattgaagggaggttactatgatttcgtgaagggtggatttgagctgtggggacttgagttcggtctttctcctcctctttccgtatgaacttaattcaattaccatttggccctcacaatttccttcctttttttggcctgacagtacttttgcttcgcaaaatcaactgtgtgtatgttgtttgtatgtattatgtatgtatgaatcaaatatggaagagcactcgttgttatatttctgaaataaataaaatggagactacttttggtataaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0236E02-u8qcS/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0236E02.1" temp_strand="+" temp_description="C02HBa0236E02.1  AC215430.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0236E02 sequenced_by:kribb upload_account_name:korea">
        <position start="17135" stop="18453"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="17435" g_stop="17530" g_length="96"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="96" r_length="96" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="17531" i_stop="17607" i_length="77">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.948" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="17608" g_stop="17713" g_length="106"/>
          <reference_exon_boundary r_type="cDNA" r_start="97" r_stop="202" r_length="106" r_score="0.991"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="17714" i_stop="17793" i_length="80">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="17794" g_stop="18157" g_length="364"/>
          <reference_exon_boundary r_type="cDNA" r_start="203" r_stop="560" r_length="358" r_score="0.964"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0236E02.1" gen_strand="+" ref_id="SGN-E366177" ref_strand="+">
        <total_alignment_score>0.975</total_alignment_score>
        <cumulative_length_of_scored_exons>566</cumulative_length_of_scored_exons>
        <coverage percentage="1.011" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0236E02.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E366177" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="17435" e_stop="17530"/>
          <exon e_start="17608" e_stop="17713"/>
          <exon e_start="17794" e_stop="18157"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCATCTTAAGGTGGAGAACATCGTTGTCATTGGCCACAGTGCTTGTGGAGGTATCAAAGGTCTCATGTCACTACCTGAAGATGGTAGTGAATCAACGTACGTCACTCTATAAATCTATTCATTCAAAACACTTATCCTTAACAGATGATTGATTAATAATCTAATATACGCAGTGCCTTTATTGAGGATTGGGTAAAAATTTGTTTACCTGCCAAGGCAAAGGTTCTGGCCGATCACGGAGGGAAAGAATTTGCACATCAATGCACAGCTTGTGAGAAGGTAAAATTCAAATTTAACTTTTTGATTATCAATTAATTACATATATAGCAGTATTTTATAATTGATGAAAAATGTTGCAGGAAGCTGTGAACGTTTCACTTGGAAATCTGCTTACGTATCCATTCGTGAGAGAAGGATTGGTGAAGAAAACATTGGCATTGAAGGGAGGTTACTATGATTTCGTGAAGGGTGGATTTGAGCTGTGGGGACTTGAGTTCGGTCTTTCTCCTCCTCTTTCCGTATGAACTTAATTCAATTACCATTTGGCCCTCACAATTTCCTTCCTTTTTTTTTTTTTCGCCTGACAGTACTTTTGCTTCGCAAAATCAACTGTGTGTATGTTGTTTGTATGTATTATGTATGTATGAATCAAATATGGAAGAGCACTCGTTGTTATATTTCTGAAATAAATAAAATGGAGACTACTTTTTGTATAAATACGTT</genome_strand>
        <mrna_strand>TCATCTTAAGGTGGAGAACATCGTTGTCATTGGCCACAGTGCTTGTGGAGGTATCAAAGGTCTCATGTCACTACCTGAAGATGGTAGTGAATCAAC.............................................................................TGCCTTTATTGAGGATTGGGTGAAAATTTGTTTACCTGCCAAGGCAAAGGTTCTGGCCGATCACGGAGGGAAAGAATTTGCACATCAATGCACAGCTTGTGAGAAG................................................................................GAAGCTGTGAACGTTTCACTTGGAAATCTGCTTACGTATCCATTCGTGAGAGAAGGATTGGTGAAGAAAACATTGGCATTGAAGGGAGGTTACTATGATTTCGTGAAGGGTGGATTTGAGCTGTGGGGACTTGAGTTCGGTCTTTCTCCTCCTCTTTCCGTATGAACTTAATTCAATTACCATTTGGCCCTCACAATTTCCTTCC------TTTTTTTGGCCTGACAGTACTTTTGCTTCGCAAAATCAACTGTGTGTATGTTGTTTGTATGTATTATGTATGTATGAATCAAATATGGAAGAGCACTCGTTGTTATATTTCTGAAATAAATAAAATGGAGACTACTTTTGGTATAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0236E02-u8qcS/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E295890" ref_strand="+" ref_description="SGN-E295890 [cLET-27-C10]">
      <seq>taaggtggagaacatcgttgtcattggccacagtgcttgtggaggtatcaaaggtctcatgtcactacctgaagatggtagtgaatcaactgcctttattgaggattgggtaaaaatttgtttacctgccaaggcaaaggttctggccgatcacggagggaaagaatttgcacatcaatgcacagcttgtgagaaggaagctgtgaacgtttcacttggaaatctgcttacgtatccattcctgagagaaggattggtgaagaaaacattggcatttgaaggagggtactattattttcttaaaggggggatttgagctgtggggacttgaagtcggtctttctcctcctttttccgatgaacttaattcaattaccatttggccctcacaatttccttcctttttttttttttcgcctgacagtacttttgcttcgcaaaatcaactgtgtgtatgttggttgtatgtattatgtatgtatgaatcaaatatggaagagcactcgtt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0236E02-u8qcS/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0236E02.1" temp_strand="+" temp_description="C02HBa0236E02.1  AC215430.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0236E02 sequenced_by:kribb upload_account_name:korea">
        <position start="17141" stop="18405"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="17441" g_stop="17530" g_length="90"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="90" r_length="90" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="17531" i_stop="17607" i_length="77">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.948" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="17608" g_stop="17713" g_length="106"/>
          <reference_exon_boundary r_type="cDNA" r_start="91" r_stop="196" r_length="106" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="17714" i_stop="17793" i_length="80">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="17794" g_stop="18105" g_length="312"/>
          <reference_exon_boundary r_type="cDNA" r_start="197" r_stop="508" r_length="312" r_score="0.949"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0236E02.1" gen_strand="+" ref_id="SGN-E295890" ref_strand="+">
        <total_alignment_score>0.969</total_alignment_score>
        <cumulative_length_of_scored_exons>508</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0236E02.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E295890" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="17441" e_stop="17530"/>
          <exon e_start="17608" e_stop="17713"/>
          <exon e_start="17794" e_stop="18105"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TAAGGTGGAGAACATCGTTGTCATTGGCCACAGTGCTTGTGGAGGTATCAAAGGTCTCATGTCACTACCTGAAGATGGTAGTGAATCAACGTACGTCACTCTATAAATCTATTCATTCAAAACACTTATCCTTAACAGATGATTGATTAATAATCTAATATACGCAGTGCCTTTATTGAGGATTGGGTAAAAATTTGTTTACCTGCCAAGGCAAAGGTTCTGGCCGATCACGGAGGGAAAGAATTTGCACATCAATGCACAGCTTGTGAGAAGGTAAAATTCAAATTTAACTTTTTGATTATCAATTAATTACATATATAGCAGTATTTTATAATTGATGAAAAATGTTGCAGGAAGCTGTGAACGTTTCACTTGGAAATCTGCTTACGTATCCATTCGTGAGAGAAGGATTGGTGAAGAAAACATTGGCATTGAAGGGAGGTTACTATGA-TTTCGTGAAGGGTGGATTTGAGCTGTGGGGACTTGAGTTCGGTCTTTCTCCTCCTCTTTCCGTATGAACTTAATTCAATTACCATTTGGCCCTCACAATTTCCTTCCTTTTTTTTTTTTTCGCCTGACAGTACTTTTGCTTCGCAAAATCAACTGTGTGTATGTTGTTTGTATGTATTATGTATGTATGAATCAAATATGGAAGAGCACTCGTT</genome_strand>
        <mrna_strand>TAAGGTGGAGAACATCGTTGTCATTGGCCACAGTGCTTGTGGAGGTATCAAAGGTCTCATGTCACTACCTGAAGATGGTAGTGAATCAAC.............................................................................TGCCTTTATTGAGGATTGGGTAAAAATTTGTTTACCTGCCAAGGCAAAGGTTCTGGCCGATCACGGAGGGAAAGAATTTGCACATCAATGCACAGCTTGTGAGAAG................................................................................GAAGCTGTGAACGTTTCACTTGGAAATCTGCTTACGTATCCATTCCTGAGAGAAGGATTGGTGAAGAAAACATTGGCATTTGAAGGAGGGTACTATTATTTTCTTAAAGGGGGGATTTGAGCTGTGGGGACTTGAAGTCGGTCTTTCTCCTCCTTTTTCCG-ATGAACTTAATTCAATTACCATTTGGCCCTCACAATTTCCTTCCTTTTTTTTTTTTTCGCCTGACAGTACTTTTGCTTCGCAAAATCAACTGTGTGTATGTTGGTTGTATGTATTATGTATGTATGAATCAAATATGGAAGAGCACTCGTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0236E02-u8qcS/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E731998" ref_strand="+" ref_description="SGN-E731998 [LB01AA07]">
      <seq>cgatacatcgttgtcattggccacagtgcttgtggaggtatcaaaggtctcatgtcactacctgaagatggtagtgaatcaactgcctttattgaggattgggtaaaaatttgtttacctgccaaggcaaaggttctggccgatcacggagggaaagaatttgcacatcaatgcacagcttgtgagaaggaagctgtgaacgtttcacttggaaatctgcttacgtatccattcgtgagagaaggattggtgaagaaaacattggcattgaagggaggttactatgatttcgtgaagggtggatttgagctgtggggacttgagttcggtctttctcctcctctttccgtaaaagatgtggccagtatactgcactggaagctcatgtagagacagagagatcgtcaagcaacaagaggattcccagatttaatctgttattcttgctcatgtagaccaaaaattggccataataatctacaaacactcttttcggctacaattatactaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0236E02-u8qcS/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0236E02.1" temp_strand="+" temp_description="C02HBa0236E02.1  AC215430.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0236E02 sequenced_by:kribb upload_account_name:korea">
        <position start="17150" stop="95691"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="17447" g_stop="17530" g_length="84"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="83" r_length="83" r_score="0.964"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="17531" i_stop="17607" i_length="77">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.948" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="17608" g_stop="17713" g_length="106"/>
          <reference_exon_boundary r_type="cDNA" r_start="84" r_stop="189" r_length="106" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="17714" i_stop="17793" i_length="80">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="17794" g_stop="17952" g_length="159"/>
          <reference_exon_boundary r_type="cDNA" r_start="190" r_stop="348" r_length="159" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="17953" i_stop="18175" i_length="223">
            <donor d_prob="0.934" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="18176" g_stop="18337" g_length="162"/>
          <reference_exon_boundary r_type="cDNA" r_start="349" r_stop="510" r_length="162" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="18338" i_stop="18522" i_length="185">
            <donor d_prob="0.000" d_score="1.00"/>
            <acceptor a_prob="0.000" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="18523" g_stop="18536" g_length="14"/>
          <reference_exon_boundary r_type="cDNA" r_start="511" r_stop="524" r_length="14" r_score="0.857"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0236E02.1" gen_strand="+" ref_id="SGN-E731998" ref_strand="+">
        <total_alignment_score>0.994</total_alignment_score>
        <cumulative_length_of_scored_exons>525</cumulative_length_of_scored_exons>
        <coverage percentage="1.002" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0236E02.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E731998" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="17447" e_stop="17530"/>
          <exon e_start="17608" e_stop="17713"/>
          <exon e_start="17794" e_stop="17952"/>
          <exon e_start="18176" e_stop="18337"/>
          <exon e_start="18523" e_stop="18536"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGAGAACATCGTTGTCATTGGCCACAGTGCTTGTGGAGGTATCAAAGGTCTCATGTCACTACCTGAAGATGGTAGTGAATCAACGTACGTCACTCTATAAATCTATTCATTCAAAACACTTATCCTTAACAGATGATTGATTAATAATCTAATATACGCAGTGCCTTTATTGAGGATTGGGTAAAAATTTGTTTACCTGCCAAGGCAAAGGTTCTGGCCGATCACGGAGGGAAAGAATTTGCACATCAATGCACAGCTTGTGAGAAGGTAAAATTCAAATTTAACTTTTTGATTATCAATTAATTACATATATAGCAGTATTTTATAATTGATGAAAAATGTTGCAGGAAGCTGTGAACGTTTCACTTGGAAATCTGCTTACGTATCCATTCGTGAGAGAAGGATTGGTGAAGAAAACATTGGCATTGAAGGGAGGTTACTATGATTTCGTGAAGGGTGGATTTGAGCTGTGGGGACTTGAGTTCGGTCTTTCTCCTCCTCTTTCCGTATGAACTTAATTCAATTACCATTTGGCCCTCACAATTTCCTTCCTTTTTTTTTTTTTCGCCTGACAGTACTTTTGCTTCGCAAAATCAACTGTGTGTATGTTGTTTGTATGTATTATGTATGTATGAATCAAATATGGAAGAGCACTCGTTGTTATATTTCTGAAATAAATAAAATGGAGACTACTTTTTGTATAAATACGTTTGTGGTGGGCTTTGGTAGGTAAAAGATGTGGCCAGTATACTGCACTGGAAGCTCATGTAGAGACAGAGAGATCGTCAAGCAACAAGAGGATTCCCAGATTTAATCTGTTATTCTTGCTCATGTAGACCAAAAATTGGCCATAATAATCTACAAACACTCTTTTCGGCTACAATTATACTAGTTTAACTTTCCATGATGCTTCTCTCATTTGTTAGTGTCAGACAACAATCCATTACAAAGCGGAAAATTTGTCTTAGTTTGCAAATCCTTTCAAGAGATTTAGGGTTCCACTCTAAAATGGGAAAGTTCGAATAAGTTGAAGCTAATGGATTGGGAATACCAAATGGAGTAATAATCTATATAAGAAAAAAAAAAGAAG</genome_strand>
        <mrna_strand>CGAT-ACATCGTTGTCATTGGCCACAGTGCTTGTGGAGGTATCAAAGGTCTCATGTCACTACCTGAAGATGGTAGTGAATCAAC.............................................................................TGCCTTTATTGAGGATTGGGTAAAAATTTGTTTACCTGCCAAGGCAAAGGTTCTGGCCGATCACGGAGGGAAAGAATTTGCACATCAATGCACAGCTTGTGAGAAG................................................................................GAAGCTGTGAACGTTTCACTTGGAAATCTGCTTACGTATCCATTCGTGAGAGAAGGATTGGTGAAGAAAACATTGGCATTGAAGGGAGGTTACTATGATTTCGTGAAGGGTGGATTTGAGCTGTGGGGACTTGAGTTCGGTCTTTCTCCTCCTCTTTCC...............................................................................................................................................................................................................................GTAAAAGATGTGGCCAGTATACTGCACTGGAAGCTCATGTAGAGACAGAGAGATCGTCAAGCAACAAGAGGATTCCCAGATTTAATCTGTTATTCTTGCTCATGTAGACCAAAAATTGGCCATAATAATCTACAAACACTCTTTTCGGCTACAATTATACTA.........................................................................................................................................................................................AAAAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0236E02-u8qcS/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E293777" ref_strand="-" ref_description="SGN-E293777 [cLET-21-P14]">
      <seq>gtgcttgtggaggtatcaaaggtctcatgtcactacctgaagatggtagtgaatcaactgcctttattgaggattgggtaaaaatttgtttacctgccaaggcaaaggttctggccgatcacggagggaaagaatttgcacatcaatgcacagcttgtgagaaggaagctgtgaacgtttcacttggaaatctgcttacgtatccattcgtgagagaaggattggtgaagaaaacattggcattgaagggaggttactatgatttcgtgaagggtggatttgagctgtggggacttgagttcggtctttctcctcctctttccgtatgaacttaattcaattaccatttggccctcacaatttccttcctttttttttttttcgcctgacagtacttttgcttcgc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0236E02-u8qcS/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0236E02.1" temp_strand="+" temp_description="C02HBa0236E02.1  AC215430.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0236E02 sequenced_by:kribb upload_account_name:korea">
        <position start="17173" stop="18335"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="17473" g_stop="17530" g_length="58"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="58" r_length="58" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="17531" i_stop="17607" i_length="77">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.948" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="17608" g_stop="17713" g_length="106"/>
          <reference_exon_boundary r_type="cDNA" r_start="59" r_stop="164" r_length="106" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="17714" i_stop="17793" i_length="80">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="17794" g_stop="18035" g_length="242"/>
          <reference_exon_boundary r_type="cDNA" r_start="165" r_stop="406" r_length="242" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0236E02.1" gen_strand="+" ref_id="SGN-E293777" ref_strand="-">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>406</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0236E02.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E293777" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="17473" e_stop="17530"/>
          <exon e_start="17608" e_stop="17713"/>
          <exon e_start="17794" e_stop="18035"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTGCTTGTGGAGGTATCAAAGGTCTCATGTCACTACCTGAAGATGGTAGTGAATCAACGTACGTCACTCTATAAATCTATTCATTCAAAACACTTATCCTTAACAGATGATTGATTAATAATCTAATATACGCAGTGCCTTTATTGAGGATTGGGTAAAAATTTGTTTACCTGCCAAGGCAAAGGTTCTGGCCGATCACGGAGGGAAAGAATTTGCACATCAATGCACAGCTTGTGAGAAGGTAAAATTCAAATTTAACTTTTTGATTATCAATTAATTACATATATAGCAGTATTTTATAATTGATGAAAAATGTTGCAGGAAGCTGTGAACGTTTCACTTGGAAATCTGCTTACGTATCCATTCGTGAGAGAAGGATTGGTGAAGAAAACATTGGCATTGAAGGGAGGTTACTATGATTTCGTGAAGGGTGGATTTGAGCTGTGGGGACTTGAGTTCGGTCTTTCTCCTCCTCTTTCCGTATGAACTTAATTCAATTACCATTTGGCCCTCACAATTTCCTTCCTTTTTTTTTTTTTCGCCTGACAGTACTTTTGCTTCGC</genome_strand>
        <mrna_strand>GTGCTTGTGGAGGTATCAAAGGTCTCATGTCACTACCTGAAGATGGTAGTGAATCAAC.............................................................................TGCCTTTATTGAGGATTGGGTAAAAATTTGTTTACCTGCCAAGGCAAAGGTTCTGGCCGATCACGGAGGGAAAGAATTTGCACATCAATGCACAGCTTGTGAGAAG................................................................................GAAGCTGTGAACGTTTCACTTGGAAATCTGCTTACGTATCCATTCGTGAGAGAAGGATTGGTGAAGAAAACATTGGCATTGAAGGGAGGTTACTATGATTTCGTGAAGGGTGGATTTGAGCTGTGGGGACTTGAGTTCGGTCTTTCTCCTCCTCTTTCCGTATGAACTTAATTCAATTACCATTTGGCCCTCACAATTTCCTTCCTTTTTTTTTTTTTCGCCTGACAGTACTTTTGCTTCGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0236E02-u8qcS/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E734573" ref_strand="+" ref_description="SGN-E734573 [LB13AB03]">
      <seq>gcttgtggaggtatcaaaggtctcatgtcactacctgaagatggtagtgaatcaactgcctttattgaggattgggtaaaaatttgtttacctgccaaggcaaaggttctggccgatcacggagggaaagaatttgcacatcaatgcacagcttgtgagaaggaagctgtgaacgtttcacttggaaatctgcttacgtatccattcgtgagagaaggattggtgaagaaaacattggcattgaagggaggttactatgatttcgtgaagggtggatttgagctgtggggacttgagttcggtctttctcctcctctttccgtatgaacttaattcaattaccatttggccctcacaatttccttcctttttttttttttcccctgacagaacttttgcttcccaaaatcaactgggggaatgttgtttgaatgtattatgtatgtatgaatcaaatatggaaaaccactcgttgttatatttctgaaataaataaaatggaaactactttttgtaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0236E02-u8qcS/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0236E02.1" temp_strand="+" temp_description="C02HBa0236E02.1  AC215430.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0236E02 sequenced_by:kribb upload_account_name:korea">
        <position start="17175" stop="29497"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="17475" g_stop="17530" g_length="56"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="56" r_length="56" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="17531" i_stop="17607" i_length="77">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.948" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="17608" g_stop="17713" g_length="106"/>
          <reference_exon_boundary r_type="cDNA" r_start="57" r_stop="162" r_length="106" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="17714" i_stop="17793" i_length="80">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="17794" g_stop="18158" g_length="365"/>
          <reference_exon_boundary r_type="cDNA" r_start="163" r_stop="527" r_length="365" r_score="0.953"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0236E02.1" gen_strand="+" ref_id="SGN-E734573" ref_strand="+">
        <total_alignment_score>0.968</total_alignment_score>
        <cumulative_length_of_scored_exons>527</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0236E02.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E734573" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="17475" e_stop="17530"/>
          <exon e_start="17608" e_stop="17713"/>
          <exon e_start="17794" e_stop="18158"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCTTGTGGAGGTATCAAAGGTCTCATGTCACTACCTGAAGATGGTAGTGAATCAACGTACGTCACTCTATAAATCTATTCATTCAAAACACTTATCCTTAACAGATGATTGATTAATAATCTAATATACGCAGTGCCTTTATTGAGGATTGGGTAAAAATTTGTTTACCTGCCAAGGCAAAGGTTCTGGCCGATCACGGAGGGAAAGAATTTGCACATCAATGCACAGCTTGTGAGAAGGTAAAATTCAAATTTAACTTTTTGATTATCAATTAATTACATATATAGCAGTATTTTATAATTGATGAAAAATGTTGCAGGAAGCTGTGAACGTTTCACTTGGAAATCTGCTTACGTATCCATTCGTGAGAGAAGGATTGGTGAAGAAAACATTGGCATTGAAGGGAGGTTACTATGATTTCGTGAAGGGTGGATTTGAGCTGTGGGGACTTGAGTTCGGTCTTTCTCCTCCTCTTTCCGTATGAACTTAATTCAATTACCATTTGGCCCTCACAATTTCCTTCCTTTTTTTTTTTTTCGCCTGACAGTACTTTTGCTTCGCAAAATCAACTGTGTGTATGTTGTTTGTATGTATTATGTATGTATGAATCAAATATGGAAGAGCACTCGTTGTTATATTTCTGAAATAAATAAAATGGAGACTACTTTTTGTATAAATACGTTT</genome_strand>
        <mrna_strand>GCTTGTGGAGGTATCAAAGGTCTCATGTCACTACCTGAAGATGGTAGTGAATCAAC.............................................................................TGCCTTTATTGAGGATTGGGTAAAAATTTGTTTACCTGCCAAGGCAAAGGTTCTGGCCGATCACGGAGGGAAAGAATTTGCACATCAATGCACAGCTTGTGAGAAG................................................................................GAAGCTGTGAACGTTTCACTTGGAAATCTGCTTACGTATCCATTCGTGAGAGAAGGATTGGTGAAGAAAACATTGGCATTGAAGGGAGGTTACTATGATTTCGTGAAGGGTGGATTTGAGCTGTGGGGACTTGAGTTCGGTCTTTCTCCTCCTCTTTCCGTATGAACTTAATTCAATTACCATTTGGCCCTCACAATTTCCTTCCTTTTTTTTTTTTTCCCCTGACAGAACTTTTGCTTCCCAAAATCAACTGGGGGAATGTTGTTTGAATGTATTATGTATGTATGAATCAAATATGGAAAACCACTCGTTGTTATATTTCTGAAATAAATAAAATGGAAACTACTTTTTGTAAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0236E02-u8qcS/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E297794" ref_strand="+" ref_description="SGN-E297794 [cLET-38-D11]">
      <seq>gcttgtggaggtatcaaaggtctcatgtcactacctgaagatggtagtgaatcaactgcctttattgaggattgggtaaaaatttgtttacctgccaaggcaaaggttctggccgatcacggagggaaagaatttgcacatcaatgcacagcttgtgagaaggaagctgtgaacgtttcacttggaaatctgcttacgtatccattcgtgagagaaggattggtgaagaaaacattggcattgaagggaggttactatgatttcgtgaagggtggatttgagctgtggggacttgagttcggtctttctcctcctctttccgtatgaacttaattcaattaccatttggccctcacaatttccttcctttttttttttttttcgcctgacagtacttttgcttcgcaaaatcaactgtgtgtatgttgtttgtatgtattatgtatgtatgaatcaaatatggnagaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0236E02-u8qcS/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0236E02.1" temp_strand="+" temp_description="C02HBa0236E02.1  AC215430.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0236E02 sequenced_by:kribb upload_account_name:korea">
        <position start="17175" stop="95707"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="17475" g_stop="17530" g_length="56"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="56" r_length="56" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="17531" i_stop="17607" i_length="77">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.948" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="17608" g_stop="17713" g_length="106"/>
          <reference_exon_boundary r_type="cDNA" r_start="57" r_stop="162" r_length="106" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="17714" i_stop="17793" i_length="80">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="17794" g_stop="18129" g_length="336"/>
          <reference_exon_boundary r_type="cDNA" r_start="163" r_stop="500" r_length="338" r_score="0.926"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0236E02.1" gen_strand="+" ref_id="SGN-E297794" ref_strand="+">
        <total_alignment_score>0.950</total_alignment_score>
        <cumulative_length_of_scored_exons>498</cumulative_length_of_scored_exons>
        <coverage percentage="0.996" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0236E02.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E297794" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="17475" e_stop="17530"/>
          <exon e_start="17608" e_stop="17713"/>
          <exon e_start="17794" e_stop="18129"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCTTGTGGAGGTATCAAAGGTCTCATGTCACTACCTGAAGATGGTAGTGAATCAACGTACGTCACTCTATAAATCTATTCATTCAAAACACTTATCCTTAACAGATGATTGATTAATAATCTAATATACGCAGTGCCTTTATTGAGGATTGGGTAAAAATTTGTTTACCTGCCAAGGCAAAGGTTCTGGCCGATCACGGAGGGAAAGAATTTGCACATCAATGCACAGCTTGTGAGAAGGTAAAATTCAAATTTAACTTTTTGATTATCAATTAATTACATATATAGCAGTATTTTATAATTGATGAAAAATGTTGCAGGAAGCTGTGAACGTTTCACTTGGAAATCTGCTTACGTATCCATTCGTGAGAGAAGGATTGGTGAAGAAAACATTGGCATTGAAGGGAGGTTACTATGATTTCGTGAAGGGTGGATTTGAGCTGTGGGGACTTGAGTTCGGTCTTTCTCCTCCTCTTTCCGTATGAACTTAATTCAATTACCATTTGGCCCTCACAATTTCCTTCC--TTTTTTTTTTTTTCGCCTGACAGTACTTTTGCTTCGCAAAATCAACTGTGTGTATGTTGTTTGTATGTATTATGTATGTATGAATCAAATATGGAAGAGCACTCGTTGTTATATTTCTGAAATAAATAAAA</genome_strand>
        <mrna_strand>GCTTGTGGAGGTATCAAAGGTCTCATGTCACTACCTGAAGATGGTAGTGAATCAAC.............................................................................TGCCTTTATTGAGGATTGGGTAAAAATTTGTTTACCTGCCAAGGCAAAGGTTCTGGCCGATCACGGAGGGAAAGAATTTGCACATCAATGCACAGCTTGTGAGAAG................................................................................GAAGCTGTGAACGTTTCACTTGGAAATCTGCTTACGTATCCATTCGTGAGAGAAGGATTGGTGAAGAAAACATTGGCATTGAAGGGAGGTTACTATGATTTCGTGAAGGGTGGATTTGAGCTGTGGGGACTTGAGTTCGGTCTTTCTCCTCCTCTTTCCGTATGAACTTAATTCAATTACCATTTGGCCCTCACAATTTCCTTCCTTTTTTTTTTTTTTTCGCCTGACAGTACTTTTGCTTCGCAAAATCAACTGTGTGTATGTTGTTTGTATGTATTATGTATGTATGAATCAAATATGGNAGAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0236E02-u8qcS/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E734337" ref_strand="+" ref_description="SGN-E734337 [LB12BF05]">
      <seq>cttgtggaggtatcaaaggtctcatgtcactacctgaagatggtagtgaatcaactgcctttattgaggattgggtaaaaatttgtttacctgccaaggcaaaggttctggccgatcacggagggaaagaatttgcacatcaatgcacagcttgtgagaaggaagctgtgaacgtttcacttggaaatctgcttacgtatccattcgtgagagaaggattggtgaagaaaacattggcattgaagggaggttactatgatttcgtgaagggtggatttgagctgtggggacttgagttcggtctttctcctcctctttccgtatgaacttaattcaattaccatttggccctcacaatttccttccttttttttttttttcccctgacagaacttttgcttcccaaaatcaactgggggaatgttgtttgaatgtattatgtatgtatgaatcaaatatggaaaacccctcgttgttatatttctgaaataaataaaagggaaactactttttgtataaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0236E02-u8qcS/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0236E02.1" temp_strand="+" temp_description="C02HBa0236E02.1  AC215430.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0236E02 sequenced_by:kribb upload_account_name:korea">
        <position start="17176" stop="18453"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="17476" g_stop="17530" g_length="55"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="55" r_length="55" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="17531" i_stop="17607" i_length="77">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.948" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="17608" g_stop="17713" g_length="106"/>
          <reference_exon_boundary r_type="cDNA" r_start="56" r_stop="161" r_length="106" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="17714" i_stop="17793" i_length="80">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="17794" g_stop="18158" g_length="365"/>
          <reference_exon_boundary r_type="cDNA" r_start="162" r_stop="527" r_length="366" r_score="0.945"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0236E02.1" gen_strand="+" ref_id="SGN-E734337" ref_strand="+">
        <total_alignment_score>0.962</total_alignment_score>
        <cumulative_length_of_scored_exons>526</cumulative_length_of_scored_exons>
        <coverage percentage="0.998" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0236E02.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E734337" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="17476" e_stop="17530"/>
          <exon e_start="17608" e_stop="17713"/>
          <exon e_start="17794" e_stop="18158"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTTGTGGAGGTATCAAAGGTCTCATGTCACTACCTGAAGATGGTAGTGAATCAACGTACGTCACTCTATAAATCTATTCATTCAAAACACTTATCCTTAACAGATGATTGATTAATAATCTAATATACGCAGTGCCTTTATTGAGGATTGGGTAAAAATTTGTTTACCTGCCAAGGCAAAGGTTCTGGCCGATCACGGAGGGAAAGAATTTGCACATCAATGCACAGCTTGTGAGAAGGTAAAATTCAAATTTAACTTTTTGATTATCAATTAATTACATATATAGCAGTATTTTATAATTGATGAAAAATGTTGCAGGAAGCTGTGAACGTTTCACTTGGAAATCTGCTTACGTATCCATTCGTGAGAGAAGGATTGGTGAAGAAAACATTGGCATTGAAGGGAGGTTACTATGATTTCGTGAAGGGTGGATTTGAGCTGTGGGGACTTGAGTTCGGTCTTTCTCCTCCTCTTTCCGTATGAACTTAATTCAATTACCATTTGGCCCTCACAATTTCCTTCC-TTTTTTTTTTTTTCGCCTGACAGTACTTTTGCTTCGCAAAATCAACTGTGTGTATGTTGTTTGTATGTATTATGTATGTATGAATCAAATATGGAAGAGCACTCGTTGTTATATTTCTGAAATAAATAAAATGGAGACTACTTTTTGTATAAATACGTTT</genome_strand>
        <mrna_strand>CTTGTGGAGGTATCAAAGGTCTCATGTCACTACCTGAAGATGGTAGTGAATCAAC.............................................................................TGCCTTTATTGAGGATTGGGTAAAAATTTGTTTACCTGCCAAGGCAAAGGTTCTGGCCGATCACGGAGGGAAAGAATTTGCACATCAATGCACAGCTTGTGAGAAG................................................................................GAAGCTGTGAACGTTTCACTTGGAAATCTGCTTACGTATCCATTCGTGAGAGAAGGATTGGTGAAGAAAACATTGGCATTGAAGGGAGGTTACTATGATTTCGTGAAGGGTGGATTTGAGCTGTGGGGACTTGAGTTCGGTCTTTCTCCTCCTCTTTCCGTATGAACTTAATTCAATTACCATTTGGCCCTCACAATTTCCTTCCTTTTTTTTTTTTTTCCCCTGACAGAACTTTTGCTTCCCAAAATCAACTGGGGGAATGTTGTTTGAATGTATTATGTATGTATGAATCAAATATGGAAAACCCCTCGTTGTTATATTTCTGAAATAAATAAAAGGGAAACTACTTTTTGTATAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0236E02-u8qcS/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E734148" ref_strand="+" ref_description="SGN-E734148 [LB11DF07]">
      <seq>catctaaggtctcatgtcactacctgaagatggtagtgaatcaactgcctttattgaggattgggtaaaaatttgtttacctgccaaggcaaaggttctggccgatcacggagggaaagaatttgcacatcaatgcacagcttgtgagaaggaagctgtgaacgtttcacttggaaatctgcttacgtatccattcgtgagagaaggattggtgaagaaaacattggcattgaagggaggttactatgatttcgtgaagggtggatttgagctgtggggacttgagttcggtctttctcctcctctttccgtatgaacttaattcaattaccatttggccctcacaatttccttcctttttttttttttcccctgacagaacttttgcttcccaaaatcaactgggggaatgttgtttgaatgtattatgtatgtataaatcaaatatggaaaacccctcgttgttatatttctgaaataaataaaatggaaactactttttgtataaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0236E02-u8qcS/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0236E02.1" temp_strand="+" temp_description="C02HBa0236E02.1  AC215430.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0236E02 sequenced_by:kribb upload_account_name:korea">
        <position start="17187" stop="18453"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="17486" g_stop="17530" g_length="45"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="45" r_length="45" r_score="0.956"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="17531" i_stop="17607" i_length="77">
            <donor d_prob="0.999" d_score="0.96"/>
            <acceptor a_prob="0.948" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="17608" g_stop="17713" g_length="106"/>
          <reference_exon_boundary r_type="cDNA" r_start="46" r_stop="151" r_length="106" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="17714" i_stop="17793" i_length="80">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="17794" g_stop="18155" g_length="362"/>
          <reference_exon_boundary r_type="cDNA" r_start="152" r_stop="513" r_length="362" r_score="0.959"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0236E02.1" gen_strand="+" ref_id="SGN-E734148" ref_strand="+">
        <total_alignment_score>0.968</total_alignment_score>
        <cumulative_length_of_scored_exons>513</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0236E02.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E734148" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="17486" e_stop="17530"/>
          <exon e_start="17608" e_stop="17713"/>
          <exon e_start="17794" e_stop="18155"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TATCAAAGGTCTCATGTCACTACCTGAAGATGGTAGTGAATCAACGTACGTCACTCTATAAATCTATTCATTCAAAACACTTATCCTTAACAGATGATTGATTAATAATCTAATATACGCAGTGCCTTTATTGAGGATTGGGTAAAAATTTGTTTACCTGCCAAGGCAAAGGTTCTGGCCGATCACGGAGGGAAAGAATTTGCACATCAATGCACAGCTTGTGAGAAGGTAAAATTCAAATTTAACTTTTTGATTATCAATTAATTACATATATAGCAGTATTTTATAATTGATGAAAAATGTTGCAGGAAGCTGTGAACGTTTCACTTGGAAATCTGCTTACGTATCCATTCGTGAGAGAAGGATTGGTGAAGAAAACATTGGCATTGAAGGGAGGTTACTATGATTTCGTGAAGGGTGGATTTGAGCTGTGGGGACTTGAGTTCGGTCTTTCTCCTCCTCTTTCCGTATGAACTTAATTCAATTACCATTTGGCCCTCACAATTTCCTTCCTTTTTTTTTTTTTCGCCTGACAGTACTTTTGCTTCGCAAAATCAACTGTGTGTATGTTGTTTGTATGTATTATGTATGTATGAATCAAATATGGAAGAGCACTCGTTGTTATATTTCTGAAATAAATAAAATGGAGACTACTTTTTGTATAAATACG</genome_strand>
        <mrna_strand>CATCTAAGGTCTCATGTCACTACCTGAAGATGGTAGTGAATCAAC.............................................................................TGCCTTTATTGAGGATTGGGTAAAAATTTGTTTACCTGCCAAGGCAAAGGTTCTGGCCGATCACGGAGGGAAAGAATTTGCACATCAATGCACAGCTTGTGAGAAG................................................................................GAAGCTGTGAACGTTTCACTTGGAAATCTGCTTACGTATCCATTCGTGAGAGAAGGATTGGTGAAGAAAACATTGGCATTGAAGGGAGGTTACTATGATTTCGTGAAGGGTGGATTTGAGCTGTGGGGACTTGAGTTCGGTCTTTCTCCTCCTCTTTCCGTATGAACTTAATTCAATTACCATTTGGCCCTCACAATTTCCTTCCTTTTTTTTTTTTTCCCCTGACAGAACTTTTGCTTCCCAAAATCAACTGGGGGAATGTTGTTTGAATGTATTATGTATGTATAAATCAAATATGGAAAACCCCTCGTTGTTATATTTCTGAAATAAATAAAATGGAAACTACTTTTTGTATAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0236E02-u8qcS/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E740588" ref_strand="+" ref_description="SGN-E740588 [LC22AD05]">
      <seq>atctaaggtctcatgtcactacctgaagatggtagtgaatcaactgcctttattgaggattgggtaaaaatttgtttacctgccaaggcaaaggttctggccgatcacggagggaaagaatttgcacatcaatgcacagcttgtgagaaggaagctgtgaacgtttcacttggaaatctgcttacgtatccattcgtgagagaaggattggtgaagaaaacattggcattgaagggaggttactatgatttcgtgaagggtggatttgagctgtggggacttgagttcggtctttctcctcctctttccgtatgaacttaattcaattaccatttggccctcacaatttccttccttttttttttttttccccggacagtacttttgcttcccaaaaccaactgggtgtatgttgtttgtatgtattatgtatgtataaatcaaatatggaaaacccctctttgttatttttctaaaataaataaaagggaaactactttttgtaaaaatacttttggggggggctttggtaggaaaaaaatgtggccagtatactgcactggaacctcatgtaaaaacaaaaaaatcttcaaccaacaaaaggattcccaaatttaatctgttattcttgcccaggaaaaccaaaaattggccataataatctacaaacactcttttcggctnnnaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0236E02-u8qcS/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0236E02.1" temp_strand="+" temp_description="C02HBa0236E02.1  AC215430.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0236E02 sequenced_by:kribb upload_account_name:korea">
        <position start="17187" stop="18625"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="17487" g_stop="17530" g_length="44"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="44" r_length="44" r_score="0.977"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="17531" i_stop="17607" i_length="77">
            <donor d_prob="0.999" d_score="0.98"/>
            <acceptor a_prob="0.948" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="17608" g_stop="17713" g_length="106"/>
          <reference_exon_boundary r_type="cDNA" r_start="45" r_stop="150" r_length="106" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="17714" i_stop="17793" i_length="80">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="17794" g_stop="18328" g_length="535"/>
          <reference_exon_boundary r_type="cDNA" r_start="151" r_stop="686" r_length="536" r_score="0.927"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="687" polyA_stop="702"/>
      <MATCH_line gen_id="C02HBa0236E02.1" gen_strand="+" ref_id="SGN-E740588" ref_strand="+">
        <total_alignment_score>0.939</total_alignment_score>
        <cumulative_length_of_scored_exons>685</cumulative_length_of_scored_exons>
        <coverage percentage="0.976" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0236E02.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E740588" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="17487" e_stop="17530"/>
          <exon e_start="17608" e_stop="17713"/>
          <exon e_start="17794" e_stop="18328"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATCAAAGGTCTCATGTCACTACCTGAAGATGGTAGTGAATCAACGTACGTCACTCTATAAATCTATTCATTCAAAACACTTATCCTTAACAGATGATTGATTAATAATCTAATATACGCAGTGCCTTTATTGAGGATTGGGTAAAAATTTGTTTACCTGCCAAGGCAAAGGTTCTGGCCGATCACGGAGGGAAAGAATTTGCACATCAATGCACAGCTTGTGAGAAGGTAAAATTCAAATTTAACTTTTTGATTATCAATTAATTACATATATAGCAGTATTTTATAATTGATGAAAAATGTTGCAGGAAGCTGTGAACGTTTCACTTGGAAATCTGCTTACGTATCCATTCGTGAGAGAAGGATTGGTGAAGAAAACATTGGCATTGAAGGGAGGTTACTATGATTTCGTGAAGGGTGGATTTGAGCTGTGGGGACTTGAGTTCGGTCTTTCTCCTCCTCTTTCCGTATGAACTTAATTCAATTACCATTTGGCCCTCACAATTTCCTTCC-TTTTTTTTTTTTTCGCCTGACAGTACTTTTGCTTCGCAAAATCAACTGTGTGTATGTTGTTTGTATGTATTATGTATGTATGAATCAAATATGGAAGAGCACTCGTTGTTATATTTCTGAAATAAATAAAATGGAGACTACTTTTTGTATAAATACGTTTGTGGTGGGCTTTGGTAGGTAAAAGATGTGGCCAGTATACTGCACTGGAAGCTCATGTAGAGACAGAGAGATCGTCAAGCAACAAGAGGATTCCCAGATTTAATCTGTTATTCTTGCTCATGTAGACCAAAAATTGGCCATAATAATCTACAAACACTCTTTTCGGCTACA</genome_strand>
        <mrna_strand>ATCTAAGGTCTCATGTCACTACCTGAAGATGGTAGTGAATCAAC.............................................................................TGCCTTTATTGAGGATTGGGTAAAAATTTGTTTACCTGCCAAGGCAAAGGTTCTGGCCGATCACGGAGGGAAAGAATTTGCACATCAATGCACAGCTTGTGAGAAG................................................................................GAAGCTGTGAACGTTTCACTTGGAAATCTGCTTACGTATCCATTCGTGAGAGAAGGATTGGTGAAGAAAACATTGGCATTGAAGGGAGGTTACTATGATTTCGTGAAGGGTGGATTTGAGCTGTGGGGACTTGAGTTCGGTCTTTCTCCTCCTCTTTCCGTATGAACTTAATTCAATTACCATTTGGCCCTCACAATTTCCTTCCTTTTTTTTTTTTTTCCCCGGACAGTACTTTTGCTTCCCAAAACCAACTGGGTGTATGTTGTTTGTATGTATTATGTATGTATAAATCAAATATGGAAAACCCCTCTTTGTTATTTTTCTAAAATAAATAAAAGGGAAACTACTTTTTGTAAAAATACTTTTGGGGGGGGCTTTGGTAGGAAAAAAATGTGGCCAGTATACTGCACTGGAACCTCATGTAAAAACAAAAAAATCTTCAACCAACAAAAGGATTCCCAAATTTAATCTGTTATTCTTGCCCAGGAAAACCAAAAATTGGCCATAATAATCTACAAACACTCTTTTCGGCTNNN</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0236E02-u8qcS/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E732225" ref_strand="+" ref_description="SGN-E732225 [LB01CD10]">
      <seq>ctcttgtcactacctgaagatggtagtgaatcaactgcctttattgaggattgggtaaaaatttgtttacctgccaaggcaaaggttctggccgatcacggagggaaagaatttgcacatcaatgcacagcttgtgagaaggaagctgtgaacgtttcacttggaaatctgcttacgtatccattcgtgagagaaggattggtgaagaaaacattggcattgaagggaggttactatgatttcgtgaagggtggatttgagctgtggggacttgagttcggtctttctcctcctctttccgtaaaagatgtggccagtatactgcactggaagctcatgtagagacagagagatcgtcaagcaacaagaggattcccagatttaatctgttattcttgctcatgtagaccaaaaattggccataataatctacaaacactcttttcggctacaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0236E02-u8qcS/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0236E02.1" temp_strand="+" temp_description="C02HBa0236E02.1  AC215430.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0236E02 sequenced_by:kribb upload_account_name:korea">
        <position start="17196" stop="18634"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="17496" g_stop="17530" g_length="35"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="35" r_length="35" r_score="0.971"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="17531" i_stop="17607" i_length="77">
            <donor d_prob="0.999" d_score="0.00"/>
            <acceptor a_prob="0.948" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="17608" g_stop="17713" g_length="106"/>
          <reference_exon_boundary r_type="cDNA" r_start="36" r_stop="141" r_length="106" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="17714" i_stop="17793" i_length="80">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="17794" g_stop="17952" g_length="159"/>
          <reference_exon_boundary r_type="cDNA" r_start="142" r_stop="300" r_length="159" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="17953" i_stop="18175" i_length="223">
            <donor d_prob="0.934" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="18176" g_stop="18328" g_length="153"/>
          <reference_exon_boundary r_type="cDNA" r_start="301" r_stop="453" r_length="153" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="454" polyA_stop="467"/>
      <MATCH_line gen_id="C02HBa0236E02.1" gen_strand="+" ref_id="SGN-E732225" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>453</cumulative_length_of_scored_exons>
        <coverage percentage="0.970" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0236E02.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E732225" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="17496" e_stop="17530"/>
          <exon e_start="17608" e_stop="17713"/>
          <exon e_start="17794" e_stop="17952"/>
          <exon e_start="18176" e_stop="18328"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTCATGTCACTACCTGAAGATGGTAGTGAATCAACGTACGTCACTCTATAAATCTATTCATTCAAAACACTTATCCTTAACAGATGATTGATTAATAATCTAATATACGCAGTGCCTTTATTGAGGATTGGGTAAAAATTTGTTTACCTGCCAAGGCAAAGGTTCTGGCCGATCACGGAGGGAAAGAATTTGCACATCAATGCACAGCTTGTGAGAAGGTAAAATTCAAATTTAACTTTTTGATTATCAATTAATTACATATATAGCAGTATTTTATAATTGATGAAAAATGTTGCAGGAAGCTGTGAACGTTTCACTTGGAAATCTGCTTACGTATCCATTCGTGAGAGAAGGATTGGTGAAGAAAACATTGGCATTGAAGGGAGGTTACTATGATTTCGTGAAGGGTGGATTTGAGCTGTGGGGACTTGAGTTCGGTCTTTCTCCTCCTCTTTCCGTATGAACTTAATTCAATTACCATTTGGCCCTCACAATTTCCTTCCTTTTTTTTTTTTTCGCCTGACAGTACTTTTGCTTCGCAAAATCAACTGTGTGTATGTTGTTTGTATGTATTATGTATGTATGAATCAAATATGGAAGAGCACTCGTTGTTATATTTCTGAAATAAATAAAATGGAGACTACTTTTTGTATAAATACGTTTGTGGTGGGCTTTGGTAGGTAAAAGATGTGGCCAGTATACTGCACTGGAAGCTCATGTAGAGACAGAGAGATCGTCAAGCAACAAGAGGATTCCCAGATTTAATCTGTTATTCTTGCTCATGTAGACCAAAAATTGGCCATAATAATCTACAAACACTCTTTTCGGCTACA</genome_strand>
        <mrna_strand>CTCTTGTCACTACCTGAAGATGGTAGTGAATCAAC.............................................................................TGCCTTTATTGAGGATTGGGTAAAAATTTGTTTACCTGCCAAGGCAAAGGTTCTGGCCGATCACGGAGGGAAAGAATTTGCACATCAATGCACAGCTTGTGAGAAG................................................................................GAAGCTGTGAACGTTTCACTTGGAAATCTGCTTACGTATCCATTCGTGAGAGAAGGATTGGTGAAGAAAACATTGGCATTGAAGGGAGGTTACTATGATTTCGTGAAGGGTGGATTTGAGCTGTGGGGACTTGAGTTCGGTCTTTCTCCTCCTCTTTCC...............................................................................................................................................................................................................................GTAAAAGATGTGGCCAGTATACTGCACTGGAAGCTCATGTAGAGACAGAGAGATCGTCAAGCAACAAGAGGATTCCCAGATTTAATCTGTTATTCTTGCTCATGTAGACCAAAAATTGGCCATAATAATCTACAAACACTCTTTTCGGCTACA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0236E02-u8qcS/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E291224" ref_strand="+" ref_description="SGN-E291224 [cLET-2-M20]">
      <seq>cactacctgaagatggtagtgaatcaactgcctttattgaggattgggtaaaaatttgtttacctgccaaggcaaaggttctggccgatcacggagggaaagaatttgcacatcaatgcacagcttgtgagaaggaagctgtgaacgtttcacttggaaatctgcttacgtatccattcgtgagagaaggattggtgaagaaaacattggcattgaagggaggttactatgatttcgtgaagggtggatttgagctgtggggacttgagttcggtctttctcctcctctttccgtatgaacttaattcaattaccatttggccctcacaatttccttcctttttttttttttcgcctgacagtacttttgcttcgcaaaatcaactgtgtgtatgttgtttgtatgtattatgtatgtatgaatcaaatatggaagagcactcgttgttatatttctgaaataaataaaatggagactactttttatataaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0236E02-u8qcS/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0236E02.1" temp_strand="+" temp_description="C02HBa0236E02.1  AC215430.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0236E02 sequenced_by:kribb upload_account_name:korea">
        <position start="17203" stop="18453"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="17503" g_stop="17530" g_length="28"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="28" r_length="28" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="17531" i_stop="17607" i_length="77">
            <donor d_prob="0.999" d_score="0.00"/>
            <acceptor a_prob="0.948" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="17608" g_stop="17713" g_length="106"/>
          <reference_exon_boundary r_type="cDNA" r_start="29" r_stop="134" r_length="106" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="17714" i_stop="17793" i_length="80">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="17794" g_stop="18158" g_length="365"/>
          <reference_exon_boundary r_type="cDNA" r_start="135" r_stop="499" r_length="365" r_score="0.981"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0236E02.1" gen_strand="+" ref_id="SGN-E291224" ref_strand="+">
        <total_alignment_score>0.985</total_alignment_score>
        <cumulative_length_of_scored_exons>499</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0236E02.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E291224" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="17503" e_stop="17530"/>
          <exon e_start="17608" e_stop="17713"/>
          <exon e_start="17794" e_stop="18158"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CACTACCTGAAGATGGTAGTGAATCAACGTACGTCACTCTATAAATCTATTCATTCAAAACACTTATCCTTAACAGATGATTGATTAATAATCTAATATACGCAGTGCCTTTATTGAGGATTGGGTAAAAATTTGTTTACCTGCCAAGGCAAAGGTTCTGGCCGATCACGGAGGGAAAGAATTTGCACATCAATGCACAGCTTGTGAGAAGGTAAAATTCAAATTTAACTTTTTGATTATCAATTAATTACATATATAGCAGTATTTTATAATTGATGAAAAATGTTGCAGGAAGCTGTGAACGTTTCACTTGGAAATCTGCTTACGTATCCATTCGTGAGAGAAGGATTGGTGAAGAAAACATTGGCATTGAAGGGAGGTTACTATGATTTCGTGAAGGGTGGATTTGAGCTGTGGGGACTTGAGTTCGGTCTTTCTCCTCCTCTTTCCGTATGAACTTAATTCAATTACCATTTGGCCCTCACAATTTCCTTCCTTTTTTTTTTTTTCGCCTGACAGTACTTTTGCTTCGCAAAATCAACTGTGTGTATGTTGTTTGTATGTATTATGTATGTATGAATCAAATATGGAAGAGCACTCGTTGTTATATTTCTGAAATAAATAAAATGGAGACTACTTTTTGTATAAATACGTTT</genome_strand>
        <mrna_strand>CACTACCTGAAGATGGTAGTGAATCAAC.............................................................................TGCCTTTATTGAGGATTGGGTAAAAATTTGTTTACCTGCCAAGGCAAAGGTTCTGGCCGATCACGGAGGGAAAGAATTTGCACATCAATGCACAGCTTGTGAGAAG................................................................................GAAGCTGTGAACGTTTCACTTGGAAATCTGCTTACGTATCCATTCGTGAGAGAAGGATTGGTGAAGAAAACATTGGCATTGAAGGGAGGTTACTATGATTTCGTGAAGGGTGGATTTGAGCTGTGGGGACTTGAGTTCGGTCTTTCTCCTCCTCTTTCCGTATGAACTTAATTCAATTACCATTTGGCCCTCACAATTTCCTTCCTTTTTTTTTTTTTCGCCTGACAGTACTTTTGCTTCGCAAAATCAACTGTGTGTATGTTGTTTGTATGTATTATGTATGTATGAATCAAATATGGAAGAGCACTCGTTGTTATATTTCTGAAATAAATAAAATGGAGACTACTTTTTATATAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0236E02-u8qcS/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E294938" ref_strand="-" ref_description="SGN-E294938 [cLET-17-B15]">
      <seq>tagtgaatcaactgcctttattgaggattgggtaaaaatttgtttacctgccaaggcaaaggttctggccgatcacggagggaaagaatttgcacatcaatgcacagcttgtgagaaggaagctgtgaacgtttcacttggaaatctgcttacgtatccattcgtgagagaaggattggtgaagaaaacattggcattgaagggaggttactatgatttcgtgaagggtggatttgagctgtggggacttgagttcggtctttctcctcctctttccgtatgaacttaattcaattaccatttggccctcacaatttccttcctttttttttttttcgcctgacagtacttttgcttcgcaaaatcaactgtgtgtatgttgtttgtatgtattatgtatgtatgaatcaaatatggaagagcactcgttgttatatttctgaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0236E02-u8qcS/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0236E02.1" temp_strand="+" temp_description="C02HBa0236E02.1  AC215430.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0236E02 sequenced_by:kribb upload_account_name:korea">
        <position start="17299" stop="18419"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="17519" g_stop="17530" g_length="12"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="12" r_length="12" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="17531" i_stop="17607" i_length="77">
            <donor d_prob="0.999" d_score="0.00"/>
            <acceptor a_prob="0.948" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="17608" g_stop="17713" g_length="106"/>
          <reference_exon_boundary r_type="cDNA" r_start="13" r_stop="118" r_length="106" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="17714" i_stop="17793" i_length="80">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="17794" g_stop="18119" g_length="326"/>
          <reference_exon_boundary r_type="cDNA" r_start="119" r_stop="444" r_length="326" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0236E02.1" gen_strand="+" ref_id="SGN-E294938" ref_strand="-">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>444</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0236E02.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E294938" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="17519" e_stop="17530"/>
          <exon e_start="17608" e_stop="17713"/>
          <exon e_start="17794" e_stop="18119"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TAGTGAATCAACGTACGTCACTCTATAAATCTATTCATTCAAAACACTTATCCTTAACAGATGATTGATTAATAATCTAATATACGCAGTGCCTTTATTGAGGATTGGGTAAAAATTTGTTTACCTGCCAAGGCAAAGGTTCTGGCCGATCACGGAGGGAAAGAATTTGCACATCAATGCACAGCTTGTGAGAAGGTAAAATTCAAATTTAACTTTTTGATTATCAATTAATTACATATATAGCAGTATTTTATAATTGATGAAAAATGTTGCAGGAAGCTGTGAACGTTTCACTTGGAAATCTGCTTACGTATCCATTCGTGAGAGAAGGATTGGTGAAGAAAACATTGGCATTGAAGGGAGGTTACTATGATTTCGTGAAGGGTGGATTTGAGCTGTGGGGACTTGAGTTCGGTCTTTCTCCTCCTCTTTCCGTATGAACTTAATTCAATTACCATTTGGCCCTCACAATTTCCTTCCTTTTTTTTTTTTTCGCCTGACAGTACTTTTGCTTCGCAAAATCAACTGTGTGTATGTTGTTTGTATGTATTATGTATGTATGAATCAAATATGGAAGAGCACTCGTTGTTATATTTCTGAA</genome_strand>
        <mrna_strand>TAGTGAATCAAC.............................................................................TGCCTTTATTGAGGATTGGGTAAAAATTTGTTTACCTGCCAAGGCAAAGGTTCTGGCCGATCACGGAGGGAAAGAATTTGCACATCAATGCACAGCTTGTGAGAAG................................................................................GAAGCTGTGAACGTTTCACTTGGAAATCTGCTTACGTATCCATTCGTGAGAGAAGGATTGGTGAAGAAAACATTGGCATTGAAGGGAGGTTACTATGATTTCGTGAAGGGTGGATTTGAGCTGTGGGGACTTGAGTTCGGTCTTTCTCCTCCTCTTTCCGTATGAACTTAATTCAATTACCATTTGGCCCTCACAATTTCCTTCCTTTTTTTTTTTTTCGCCTGACAGTACTTTTGCTTCGCAAAATCAACTGTGTGTATGTTGTTTGTATGTATTATGTATGTATGAATCAAATATGGAAGAGCACTCGTTGTTATATTTCTGAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0236E02-u8qcS/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E545781" ref_strand="+" ref_description="SGN-E545781 [TUS-68-M23](-)">
      <seq>ctttattgaggattgggtgaaaatttgtttacctgccaaggcaaaggttctggccgatcacggagggaaagaatttggacatcaatgcacagcttgtgagaaggaagctgtgaacgtttcacttggaaatctgcttaagtatccattcgtgagagaaggattggtgaagaaaacattggcattgaagggaggttactatgatttcgtgaagggtggatttgagctgtggggacttgagttcggtctttctcctcctctttccgtatgaacttaattcaattaccatttggccctcacaatttccttccttttttttttcacgcctgacagtatttttgcttcgcaaaatcaactgtgtatgttgtttgtatgtattatgtatgtatgaatcaaatatggaagagcactcgttgttatatttctgaaatgaataaaatggagactacttttgg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0236E02-u8qcS/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0236E02.1" temp_strand="+" temp_description="C02HBa0236E02.1  AC215430.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0236E02 sequenced_by:kribb upload_account_name:korea">
        <position start="17311" stop="18445"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="17611" g_stop="17713" g_length="103"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="103" r_length="103" r_score="0.981"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="17714" i_stop="17793" i_length="80">
            <donor d_prob="1.000" d_score="0.98"/>
            <acceptor a_prob="0.997" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="17794" g_stop="18145" g_length="352"/>
          <reference_exon_boundary r_type="cDNA" r_start="104" r_stop="452" r_length="349" r_score="0.974"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0236E02.1" gen_strand="+" ref_id="SGN-E545781" ref_strand="+">
        <total_alignment_score>0.976</total_alignment_score>
        <cumulative_length_of_scored_exons>455</cumulative_length_of_scored_exons>
        <coverage percentage="1.007" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0236E02.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E545781" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="17611" e_stop="17713"/>
          <exon e_start="17794" e_stop="18145"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTTTATTGAGGATTGGGTAAAAATTTGTTTACCTGCCAAGGCAAAGGTTCTGGCCGATCACGGAGGGAAAGAATTTGCACATCAATGCACAGCTTGTGAGAAGGTAAAATTCAAATTTAACTTTTTGATTATCAATTAATTACATATATAGCAGTATTTTATAATTGATGAAAAATGTTGCAGGAAGCTGTGAACGTTTCACTTGGAAATCTGCTTACGTATCCATTCGTGAGAGAAGGATTGGTGAAGAAAACATTGGCATTGAAGGGAGGTTACTATGATTTCGTGAAGGGTGGATTTGAGCTGTGGGGACTTGAGTTCGGTCTTTCTCCTCCTCTTTCCGTATGAACTTAATTCAATTACCATTTGGCCCTCACAATTTCCTTCCTTTTTTTTTTTTTCGCCTGACAGTACTTTTGCTTCGCAAAATCAACTGTGTGTATGTTGTTTGTATGTATTATGTATGTATGAATCAAATATGGAAGAGCACTCGTTGTTATATTTCTGAAATAAATAAAATGGAGACTACTTTTTG</genome_strand>
        <mrna_strand>CTTTATTGAGGATTGGGTGAAAATTTGTTTACCTGCCAAGGCAAAGGTTCTGGCCGATCACGGAGGGAAAGAATTTGGACATCAATGCACAGCTTGTGAGAAG................................................................................GAAGCTGTGAACGTTTCACTTGGAAATCTGCTTAAGTATCCATTCGTGAGAGAAGGATTGGTGAAGAAAACATTGGCATTGAAGGGAGGTTACTATGATTTCGTGAAGGGTGGATTTGAGCTGTGGGGACTTGAGTTCGGTCTTTCTCCTCCTCTTTCCGTATGAACTTAATTCAATTACCATTTGGCCCTCACAATTTCCTTCC-TTTTTTTTTTCACGCCTGACAGTATTTTTGCTTCGCAAAATCAAC--TGTGTATGTTGTTTGTATGTATTATGTATGTATGAATCAAATATGGAAGAGCACTCGTTGTTATATTTCTGAAATGAATAAAATGGAGACTACTTTTGG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0236E02-u8qcS/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E390842" ref_strand="+" ref_description="SGN-E390842 [TUS-47-C6](-)">
      <seq>attgaggattgggtaaaaatttgttttcctgccaaggcaaaggttctggccgatcacggagggaaagaatttgcacatcaatgcacagcttgtgagaaggaagctgtgaacgtttcacttggaaatttgcttacgtatccattcgtgagagaaggattggtgaagaaaacattggcattgaagggaggttactatgatttcgtgaagggtggatttgagctgtggggacttgagttcggtctttctcctcctctttccgtatgaacttaattcaattaccatttggccctcacaatttccttcctttttttttttttcgcctgacagtacttttgcttcgcaaaatcaactgtgtgtaaggtgtttgtatgtattatgtatgtatgaatctgttgaatgccttgaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0236E02-u8qcS/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0236E02.1" temp_strand="+" temp_description="C02HBa0236E02.1  AC215430.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0236E02 sequenced_by:kribb upload_account_name:korea">
        <position start="17315" stop="18384"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="17615" g_stop="17713" g_length="99"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="99" r_length="99" r_score="0.990"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="17714" i_stop="17793" i_length="80">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="17794" g_stop="18081" g_length="288"/>
          <reference_exon_boundary r_type="cDNA" r_start="100" r_stop="387" r_length="288" r_score="0.990"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="405" polyA_stop="419"/>
      <MATCH_line gen_id="C02HBa0236E02.1" gen_strand="+" ref_id="SGN-E390842" ref_strand="+">
        <total_alignment_score>0.990</total_alignment_score>
        <cumulative_length_of_scored_exons>387</cumulative_length_of_scored_exons>
        <coverage percentage="0.924" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0236E02.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E390842" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="17615" e_stop="17713"/>
          <exon e_start="17794" e_stop="18081"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATTGAGGATTGGGTAAAAATTTGTTTACCTGCCAAGGCAAAGGTTCTGGCCGATCACGGAGGGAAAGAATTTGCACATCAATGCACAGCTTGTGAGAAGGTAAAATTCAAATTTAACTTTTTGATTATCAATTAATTACATATATAGCAGTATTTTATAATTGATGAAAAATGTTGCAGGAAGCTGTGAACGTTTCACTTGGAAATCTGCTTACGTATCCATTCGTGAGAGAAGGATTGGTGAAGAAAACATTGGCATTGAAGGGAGGTTACTATGATTTCGTGAAGGGTGGATTTGAGCTGTGGGGACTTGAGTTCGGTCTTTCTCCTCCTCTTTCCGTATGAACTTAATTCAATTACCATTTGGCCCTCACAATTTCCTTCCTTTTTTTTTTTTTCGCCTGACAGTACTTTTGCTTCGCAAAATCAACTGTGTGTATGTTGTTTGTATGTATTATGTATGTATGA</genome_strand>
        <mrna_strand>ATTGAGGATTGGGTAAAAATTTGTTTTCCTGCCAAGGCAAAGGTTCTGGCCGATCACGGAGGGAAAGAATTTGCACATCAATGCACAGCTTGTGAGAAG................................................................................GAAGCTGTGAACGTTTCACTTGGAAATTTGCTTACGTATCCATTCGTGAGAGAAGGATTGGTGAAGAAAACATTGGCATTGAAGGGAGGTTACTATGATTTCGTGAAGGGTGGATTTGAGCTGTGGGGACTTGAGTTCGGTCTTTCTCCTCCTCTTTCCGTATGAACTTAATTCAATTACCATTTGGCCCTCACAATTTCCTTCCTTTTTTTTTTTTTCGCCTGACAGTACTTTTGCTTCGCAAAATCAACTGTGTGTAAGGTGTTTGTATGTATTATGTATGTATGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0236E02-u8qcS/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E278439" ref_strand="-" ref_description="SGN-E278439 [cLEL-2-C11]">
      <seq>ttgggtaaaaatttgtttccctgccaaggcaaaggttctggccgatcacggagggaaagaatttgcacatcaatgcacagcttgtgagaaggaaactgtgaacgtttcacttggaaatctgcttacgtatccattcgtgagagaaggattggtgaagaaaacattggcattgaagggaggttactatgatttcgtgaagggtggatttgaactgtggggacttgagttcggtctttctcctcctctttccgtatgaacttaattcaattaccatttggccctcacaatttccttccttttttttttttttcgcctgacagtacttttgcttcgcaaaatcaactgtgtgtatgttgtttgtatgtattatgtatgtatggatcaaatatggaagagcactccctgttatatttctgaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0236E02-u8qcS/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0236E02.1" temp_strand="+" temp_description="C02HBa0236E02.1  AC215430.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0236E02 sequenced_by:kribb upload_account_name:korea">
        <position start="17323" stop="18429"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="17623" g_stop="17713" g_length="91"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="91" r_length="91" r_score="0.989"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="17714" i_stop="17793" i_length="80">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="17794" g_stop="18133" g_length="340"/>
          <reference_exon_boundary r_type="cDNA" r_start="92" r_stop="432" r_length="341" r_score="0.965"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0236E02.1" gen_strand="+" ref_id="SGN-E278439" ref_strand="-">
        <total_alignment_score>0.970</total_alignment_score>
        <cumulative_length_of_scored_exons>431</cumulative_length_of_scored_exons>
        <coverage percentage="0.998" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0236E02.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E278439" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="17623" e_stop="17713"/>
          <exon e_start="17794" e_stop="18133"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTGGGTAAAAATTTGTTTACCTGCCAAGGCAAAGGTTCTGGCCGATCACGGAGGGAAAGAATTTGCACATCAATGCACAGCTTGTGAGAAGGTAAAATTCAAATTTAACTTTTTGATTATCAATTAATTACATATATAGCAGTATTTTATAATTGATGAAAAATGTTGCAGGAAGCTGTGAACGTTTCACTTGGAAATCTGCTTACGTATCCATTCGTGAGAGAAGGATTGGTGAAGAAAACATTGGCATTGAAGGGAGGTTACTATGATTTCGTGAAGGGTGGATTTGAGCTGTGGGGACTTGAGTTCGGTCTTTCTCCTCCTCTTTCCGTATGAACTTAATTCAATTACCATTTGGCCCTCACAATTTCCTTCC-TTTTTTTTTTTTTCGCCTGACAGTACTTTTGCTTCGCAAAATCAACTGTGTGTATGTTGTTTGTATGTATTATGTATGTATGAATCAAATATGGAAGAGCACTCGTTGTTATATTTCTGAAATAAATAAAATGGA</genome_strand>
        <mrna_strand>TTGGGTAAAAATTTGTTTCCCTGCCAAGGCAAAGGTTCTGGCCGATCACGGAGGGAAAGAATTTGCACATCAATGCACAGCTTGTGAGAAG................................................................................GAAACTGTGAACGTTTCACTTGGAAATCTGCTTACGTATCCATTCGTGAGAGAAGGATTGGTGAAGAAAACATTGGCATTGAAGGGAGGTTACTATGATTTCGTGAAGGGTGGATTTGAACTGTGGGGACTTGAGTTCGGTCTTTCTCCTCCTCTTTCCGTATGAACTTAATTCAATTACCATTTGGCCCTCACAATTTCCTTCCTTTTTTTTTTTTTTCGCCTGACAGTACTTTTGCTTCGCAAAATCAACTGTGTGTATGTTGTTTGTATGTATTATGTATGTATGGATCAAATATGGAAGAGCACTCCCTGTTATATTTCTGAAAAAAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0236E02-u8qcS/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E224758" ref_strand="+" ref_description="SGN-E224758 [cLEL-27-I17](-)">
      <seq>aaatttgtttacctgccaaggcaaaggttctggccgatcacggagggaaagaatttgcacatcaatgcacagcttgtgagaaggaagctgtgaacgtttcacttggaaatctgcttacgtatccattcgtgagagaaggattggtgaagaaaacattggcattgaagggaggttactatgatttcgtgaagggtggatttgagctgtggggacttgagttcggtctttctcctcctctttccgtatgaacttaattcaattaccatttggccctcacaatttccttcctttttttttttttcgcctgacagtacttttgcttcgcaaaatcaactgtgtgtatgttgtttgtatgtattatgtatgtatgaatcaaatatggaagagcactcgttgttatatttctgaaataaataaaatggagactacttttcctataaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0236E02-u8qcS/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0236E02.1" temp_strand="+" temp_description="C02HBa0236E02.1  AC215430.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0236E02 sequenced_by:kribb upload_account_name:korea">
        <position start="17331" stop="126850"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="17631" g_stop="17713" g_length="83"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="83" r_length="83" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="17714" i_stop="17793" i_length="80">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="17794" g_stop="18154" g_length="361"/>
          <reference_exon_boundary r_type="cDNA" r_start="84" r_stop="444" r_length="361" r_score="0.989"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="18155" i_stop="18522" i_length="368">
            <donor d_prob="0.000" d_score="0.92"/>
            <acceptor a_prob="0.000" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="18523" g_stop="18534" g_length="12"/>
          <reference_exon_boundary r_type="cDNA" r_start="445" r_stop="456" r_length="12" r_score="0.917"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0236E02.1" gen_strand="+" ref_id="SGN-E224758" ref_strand="+">
        <total_alignment_score>0.991</total_alignment_score>
        <cumulative_length_of_scored_exons>456</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0236E02.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E224758" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="17631" e_stop="17713"/>
          <exon e_start="17794" e_stop="18154"/>
          <exon e_start="18523" e_stop="18534"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAATTTGTTTACCTGCCAAGGCAAAGGTTCTGGCCGATCACGGAGGGAAAGAATTTGCACATCAATGCACAGCTTGTGAGAAGGTAAAATTCAAATTTAACTTTTTGATTATCAATTAATTACATATATAGCAGTATTTTATAATTGATGAAAAATGTTGCAGGAAGCTGTGAACGTTTCACTTGGAAATCTGCTTACGTATCCATTCGTGAGAGAAGGATTGGTGAAGAAAACATTGGCATTGAAGGGAGGTTACTATGATTTCGTGAAGGGTGGATTTGAGCTGTGGGGACTTGAGTTCGGTCTTTCTCCTCCTCTTTCCGTATGAACTTAATTCAATTACCATTTGGCCCTCACAATTTCCTTCCTTTTTTTTTTTTTCGCCTGACAGTACTTTTGCTTCGCAAAATCAACTGTGTGTATGTTGTTTGTATGTATTATGTATGTATGAATCAAATATGGAAGAGCACTCGTTGTTATATTTCTGAAATAAATAAAATGGAGACTACTTTTTGTATAAATACGTTTGTGGTGGGCTTTGGTAGGTAAAAGATGTGGCCAGTATACTGCACTGGAAGCTCATGTAGAGACAGAGAGATCGTCAAGCAACAAGAGGATTCCCAGATTTAATCTGTTATTCTTGCTCATGTAGACCAAAAATTGGCCATAATAATCTACAAACACTCTTTTCGGCTACAATTATACTAGTTTAACTTTCCATGATGCTTCTCTCATTTGTTAGTGTCAGACAACAATCCATTACAAAGCGGAAAATTTGTCTTAGTTTGCAAATCCTTTCAAGAGATTTAGGGTTCCACTCTAAAATGGGAAAGTTCGAATAAGTTGAAGCTAATGGATTGGGAATACCAAATGGAGTAATAATCTATATAAGAAAAAAAAAAGA</genome_strand>
        <mrna_strand>AAATTTGTTTACCTGCCAAGGCAAAGGTTCTGGCCGATCACGGAGGGAAAGAATTTGCACATCAATGCACAGCTTGTGAGAAG................................................................................GAAGCTGTGAACGTTTCACTTGGAAATCTGCTTACGTATCCATTCGTGAGAGAAGGATTGGTGAAGAAAACATTGGCATTGAAGGGAGGTTACTATGATTTCGTGAAGGGTGGATTTGAGCTGTGGGGACTTGAGTTCGGTCTTTCTCCTCCTCTTTCCGTATGAACTTAATTCAATTACCATTTGGCCCTCACAATTTCCTTCCTTTTTTTTTTTTTCGCCTGACAGTACTTTTGCTTCGCAAAATCAACTGTGTGTATGTTGTTTGTATGTATTATGTATGTATGAATCAAATATGGAAGAGCACTCGTTGTTATATTTCTGAAATAAATAAAATGGAGACTACTTTTCCTATAAAAAA................................................................................................................................................................................................................................................................................................................................................................................AAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0236E02-u8qcS/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E397296" ref_strand="+" ref_description="SGN-E397296 [TUS-45-G22](-)">
      <seq>ggagggaaagaatttgcacttcaatgcacagcttgtgagaaggaagctgtgaacgtttcacttggaaatttgcttacgtatccatttgtgagagaaggattggtgaagaaaacattggcattgaagggaggttactatgatttcgtgaagggtggatttgagctgtggggacttgagttcggtctttctcctcctctttccgtatgaacttaattcaattaccatttggccctcacaatttccttcctttttttttttttcgcctgacagtacttttgcttcgcaaaatcaactgtgtgtatgttgtttgtatgtattatgtatgtatgaatcaaatatggaagagcactcgttgttatatttctgaaataaataaaatggagactactttttgtataaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0236E02-u8qcS/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0236E02.1" temp_strand="+" temp_description="C02HBa0236E02.1  AC215430.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0236E02 sequenced_by:kribb upload_account_name:korea">
        <position start="17372" stop="18453"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="17672" g_stop="17713" g_length="42"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="42" r_length="42" r_score="0.976"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="17714" i_stop="17793" i_length="80">
            <donor d_prob="1.000" d_score="0.98"/>
            <acceptor a_prob="0.997" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="17794" g_stop="18160" g_length="367"/>
          <reference_exon_boundary r_type="cDNA" r_start="43" r_stop="409" r_length="367" r_score="0.973"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0236E02.1" gen_strand="+" ref_id="SGN-E397296" ref_strand="+">
        <total_alignment_score>0.973</total_alignment_score>
        <cumulative_length_of_scored_exons>409</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0236E02.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E397296" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="17672" e_stop="17713"/>
          <exon e_start="17794" e_stop="18160"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGAGGGAAAGAATTTGCACATCAATGCACAGCTTGTGAGAAGGTAAAATTCAAATTTAACTTTTTGATTATCAATTAATTACATATATAGCAGTATTTTATAATTGATGAAAAATGTTGCAGGAAGCTGTGAACGTTTCACTTGGAAATCTGCTTACGTATCCATTCGTGAGAGAAGGATTGGTGAAGAAAACATTGGCATTGAAGGGAGGTTACTATGATTTCGTGAAGGGTGGATTTGAGCTGTGGGGACTTGAGTTCGGTCTTTCTCCTCCTCTTTCCGTATGAACTTAATTCAATTACCATTTGGCCCTCACAATTTCCTTCCTTTTTTTTTTTTTCGCCTGACAGTACTTTTGCTTCGCAAAATCAACTGTGTGTATGTTGTTTGTATGTATTATGTATGTATGAATCAAATATGGAAGAGCACTCGTTGTTATATTTCTGAAATAAATAAAATGGAGACTACTTTTTGTATAAATACGTTTGT</genome_strand>
        <mrna_strand>GGAGGGAAAGAATTTGCACTTCAATGCACAGCTTGTGAGAAG................................................................................GAAGCTGTGAACGTTTCACTTGGAAATTTGCTTACGTATCCATTTGTGAGAGAAGGATTGGTGAAGAAAACATTGGCATTGAAGGGAGGTTACTATGATTTCGTGAAGGGTGGATTTGAGCTGTGGGGACTTGAGTTCGGTCTTTCTCCTCCTCTTTCCGTATGAACTTAATTCAATTACCATTTGGCCCTCACAATTTCCTTCCTTTTTTTTTTTTTCGCCTGACAGTACTTTTGCTTCGCAAAATCAACTGTGTGTATGTTGTTTGTATGTATTATGTATGTATGAATCAAATATGGAAGAGCACTCGTTGTTATATTTCTGAAATAAATAAAATGGAGACTACTTTTTGTATAAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0236E02-u8qcS/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E237382" ref_strand="+" ref_description="SGN-E237382 [cLEL-7-G20](-)">
      <seq>gggaaagaatttgcacatcaatgcacagcttgtgagaaggaagctgtgaacgtttcacttggaaatctgcttacgtatccattcgtgagagaaggattggtgaagaaaacattggcattgaagggaggttactatgatttcgtgaagggtggatttgagctgtggggacttgagttcggtctttctcctcctctttccgtatgaacttaattcaattaccatttggccctcacaatttccttcctttttttttttttcgcctgacagtacttttgcttcgcaaaatcaactgtgtgtatgttgtttgtatgtattatgtatgtatgaatcaaatatggaagagcactcgttgttatatttctgaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0236E02-u8qcS/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0236E02.1" temp_strand="+" temp_description="C02HBa0236E02.1  AC215430.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0236E02 sequenced_by:kribb upload_account_name:korea">
        <position start="17375" stop="18429"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="17675" g_stop="17713" g_length="39"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="39" r_length="39" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="17714" i_stop="17793" i_length="80">
            <donor d_prob="1.000" d_score="0.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="17794" g_stop="18134" g_length="341"/>
          <reference_exon_boundary r_type="cDNA" r_start="40" r_stop="380" r_length="341" r_score="0.982"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0236E02.1" gen_strand="+" ref_id="SGN-E237382" ref_strand="+">
        <total_alignment_score>0.982</total_alignment_score>
        <cumulative_length_of_scored_exons>380</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0236E02.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E237382" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="17675" e_stop="17713"/>
          <exon e_start="17794" e_stop="18134"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGGAAAGAATTTGCACATCAATGCACAGCTTGTGAGAAGGTAAAATTCAAATTTAACTTTTTGATTATCAATTAATTACATATATAGCAGTATTTTATAATTGATGAAAAATGTTGCAGGAAGCTGTGAACGTTTCACTTGGAAATCTGCTTACGTATCCATTCGTGAGAGAAGGATTGGTGAAGAAAACATTGGCATTGAAGGGAGGTTACTATGATTTCGTGAAGGGTGGATTTGAGCTGTGGGGACTTGAGTTCGGTCTTTCTCCTCCTCTTTCCGTATGAACTTAATTCAATTACCATTTGGCCCTCACAATTTCCTTCCTTTTTTTTTTTTTCGCCTGACAGTACTTTTGCTTCGCAAAATCAACTGTGTGTATGTTGTTTGTATGTATTATGTATGTATGAATCAAATATGGAAGAGCACTCGTTGTTATATTTCTGAAATAAATAAAATGGAG</genome_strand>
        <mrna_strand>GGGAAAGAATTTGCACATCAATGCACAGCTTGTGAGAAG................................................................................GAAGCTGTGAACGTTTCACTTGGAAATCTGCTTACGTATCCATTCGTGAGAGAAGGATTGGTGAAGAAAACATTGGCATTGAAGGGAGGTTACTATGATTTCGTGAAGGGTGGATTTGAGCTGTGGGGACTTGAGTTCGGTCTTTCTCCTCCTCTTTCCGTATGAACTTAATTCAATTACCATTTGGCCCTCACAATTTCCTTCCTTTTTTTTTTTTTCGCCTGACAGTACTTTTGCTTCGCAAAATCAACTGTGTGTATGTTGTTTGTATGTATTATGTATGTATGAATCAAATATGGAAGAGCACTCGTTGTTATATTTCTGAAAAAAAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0236E02-u8qcS/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E378485" ref_strand="+" ref_description="SGN-E378485 [TUS-48-H15]">
      <seq>ggaaagaatttgcacatcaatgcactcgcttgtgagaaggaagctgtgaacgtttcacttggaaatctgcttacgtatccattcgtgagagaaggattggtgaagaaaacattggcattgaagggaggttactatgatttcgtgaagggtggatttgagctgtggggacttgagttcggtctttctcctcctctttccgtatgaacttaattcaattaccatttggccctcacatttcccttcttttttttttttttccccggaaaattcttttggttccaaaaatcaacggggg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0236E02-u8qcS/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0236E02.1" temp_strand="+" temp_description="C02HBa0236E02.1  AC215430.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0236E02 sequenced_by:kribb upload_account_name:korea">
        <position start="17376" stop="18348"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="17676" g_stop="17713" g_length="38"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="39" r_length="39" r_score="0.921"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="17714" i_stop="17793" i_length="80">
            <donor d_prob="1.000" d_score="0.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="17794" g_stop="18049" g_length="256"/>
          <reference_exon_boundary r_type="cDNA" r_start="40" r_stop="295" r_length="256" r_score="0.945"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0236E02.1" gen_strand="+" ref_id="SGN-E378485" ref_strand="+">
        <total_alignment_score>0.945</total_alignment_score>
        <cumulative_length_of_scored_exons>294</cumulative_length_of_scored_exons>
        <coverage percentage="0.997" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0236E02.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E378485" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="17676" e_stop="17713"/>
          <exon e_start="17794" e_stop="18049"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGAAAGAATTTGCACATCAATGCAC-AGCTTGTGAGAAGGTAAAATTCAAATTTAACTTTTTGATTATCAATTAATTACATATATAGCAGTATTTTATAATTGATGAAAAATGTTGCAGGAAGCTGTGAACGTTTCACTTGGAAATCTGCTTACGTATCCATTCGTGAGAGAAGGATTGGTGAAGAAAACATTGGCATTGAAGGGAGGTTACTATGATTTCGTGAAGGGTGGATTTGAGCTGTGGGGACTTGAGTTCGGTCTTTCTCCTCCTCTTTCCGTATGAACTTAATTCAATTACCATTTGGCCCTCACAATTTCCTTCCTTTTTTTTTTTTTCGCCTGACAGTACTTTTGCTTCGCAAAATCAACTGTGT</genome_strand>
        <mrna_strand>GGAAAGAATTTGCACATCAATGCACTCGCTTGTGAGAAG................................................................................GAAGCTGTGAACGTTTCACTTGGAAATCTGCTTACGTATCCATTCGTGAGAGAAGGATTGGTGAAGAAAACATTGGCATTGAAGGGAGGTTACTATGATTTCGTGAAGGGTGGATTTGAGCTGTGGGGACTTGAGTTCGGTCTTTCTCCTCCTCTTTCCGTATGAACTTAATTCAATTACCATTTGGCCCTCACATTTCCCTTCTTTTTTTTTTTTTTCCCCGGAAAATTCTTTTGGTTCCAAAAATCAACGGGGG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0236E02-u8qcS/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E237283" ref_strand="+" ref_description="SGN-E237283 [cLEL-7-G10](-)">
      <seq>aaagaatttgcacatcaatgcacagcttgtagaagaaagctgtgaacgtttcacttggaaatctgcttacgtatccattcgtgagagaaggattggtgaagaaaacattggcattgaagggaggttactatgatttcgtgaagggtggatttgagctgtggggacttgagttcggtctttctcctcctctttccgtatgaacttaattcaattaccatttggccctcacaatttccttcctttttttttttttcgcctgacagtacttttgcttcgcaaaatcaactgtgtgtatgttgtttgtatgtattatgtatgtatgaatcaaatatggaagagcactcgttgttatatttctgaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0236E02-u8qcS/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0236E02.1" temp_strand="+" temp_description="C02HBa0236E02.1  AC215430.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0236E02 sequenced_by:kribb upload_account_name:korea">
        <position start="17378" stop="18429"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="17678" g_stop="17713" g_length="36"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="35" r_length="35" r_score="0.972"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="17714" i_stop="17793" i_length="80">
            <donor d_prob="1.000" d_score="0.00"/>
            <acceptor a_prob="0.997" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="17794" g_stop="18134" g_length="341"/>
          <reference_exon_boundary r_type="cDNA" r_start="36" r_stop="376" r_length="341" r_score="0.979"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0236E02.1" gen_strand="+" ref_id="SGN-E237283" ref_strand="+">
        <total_alignment_score>0.979</total_alignment_score>
        <cumulative_length_of_scored_exons>377</cumulative_length_of_scored_exons>
        <coverage percentage="1.003" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0236E02.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E237283" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="17678" e_stop="17713"/>
          <exon e_start="17794" e_stop="18134"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAGAATTTGCACATCAATGCACAGCTTGTGAGAAGGTAAAATTCAAATTTAACTTTTTGATTATCAATTAATTACATATATAGCAGTATTTTATAATTGATGAAAAATGTTGCAGGAAGCTGTGAACGTTTCACTTGGAAATCTGCTTACGTATCCATTCGTGAGAGAAGGATTGGTGAAGAAAACATTGGCATTGAAGGGAGGTTACTATGATTTCGTGAAGGGTGGATTTGAGCTGTGGGGACTTGAGTTCGGTCTTTCTCCTCCTCTTTCCGTATGAACTTAATTCAATTACCATTTGGCCCTCACAATTTCCTTCCTTTTTTTTTTTTTCGCCTGACAGTACTTTTGCTTCGCAAAATCAACTGTGTGTATGTTGTTTGTATGTATTATGTATGTATGAATCAAATATGGAAGAGCACTCGTTGTTATATTTCTGAAATAAATAAAATGGAG</genome_strand>
        <mrna_strand>AAAGAATTTGCACATCAATGCACAGCTTGT-AGAAG................................................................................AAAGCTGTGAACGTTTCACTTGGAAATCTGCTTACGTATCCATTCGTGAGAGAAGGATTGGTGAAGAAAACATTGGCATTGAAGGGAGGTTACTATGATTTCGTGAAGGGTGGATTTGAGCTGTGGGGACTTGAGTTCGGTCTTTCTCCTCCTCTTTCCGTATGAACTTAATTCAATTACCATTTGGCCCTCACAATTTCCTTCCTTTTTTTTTTTTTCGCCTGACAGTACTTTTGCTTCGCAAAATCAACTGTGTGTATGTTGTTTGTATGTATTATGTATGTATGAATCAAATATGGAAGAGCACTCGTTGTTATATTTCTGAAAAAAAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0236E02-u8qcS/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E290956" ref_strand="+" ref_description="SGN-E290956 [cLET-8-I2]">
      <seq>gaatttgcacatcaatgcacagcttgtgagaaggaagctgtgaacgtttcacttggaaatctgcttacgtatccattcgtgagagaaggattggtgaagaaaacattggcattgaagggaggttactatgatttcgtgaagggtggatttgagctgtggggacttgagttcggactttctcctcctctttccgtatgaacttaattcaattaccatttggccctcacaatttccttcctttttttttttttcgcctgacagtgcttttgcttcgcaaaatcaactgcgtgtatgtagtttgtatgtattatgtatgtatgaatcaaatatggaagagcactcgttgttatatttctgaaataaataaattggagactactttttg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0236E02-u8qcS/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0236E02.1" temp_strand="+" temp_description="C02HBa0236E02.1  AC215430.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0236E02 sequenced_by:kribb upload_account_name:korea">
        <position start="17381" stop="18445"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="17681" g_stop="17713" g_length="33"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="33" r_length="33" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="17714" i_stop="17793" i_length="80">
            <donor d_prob="1.000" d_score="0.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="17794" g_stop="18145" g_length="352"/>
          <reference_exon_boundary r_type="cDNA" r_start="34" r_stop="385" r_length="352" r_score="0.986"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0236E02.1" gen_strand="+" ref_id="SGN-E290956" ref_strand="+">
        <total_alignment_score>0.986</total_alignment_score>
        <cumulative_length_of_scored_exons>385</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0236E02.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E290956" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="17681" e_stop="17713"/>
          <exon e_start="17794" e_stop="18145"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAATTTGCACATCAATGCACAGCTTGTGAGAAGGTAAAATTCAAATTTAACTTTTTGATTATCAATTAATTACATATATAGCAGTATTTTATAATTGATGAAAAATGTTGCAGGAAGCTGTGAACGTTTCACTTGGAAATCTGCTTACGTATCCATTCGTGAGAGAAGGATTGGTGAAGAAAACATTGGCATTGAAGGGAGGTTACTATGATTTCGTGAAGGGTGGATTTGAGCTGTGGGGACTTGAGTTCGGTCTTTCTCCTCCTCTTTCCGTATGAACTTAATTCAATTACCATTTGGCCCTCACAATTTCCTTCCTTTTTTTTTTTTTCGCCTGACAGTACTTTTGCTTCGCAAAATCAACTGTGTGTATGTTGTTTGTATGTATTATGTATGTATGAATCAAATATGGAAGAGCACTCGTTGTTATATTTCTGAAATAAATAAAATGGAGACTACTTTTTG</genome_strand>
        <mrna_strand>GAATTTGCACATCAATGCACAGCTTGTGAGAAG................................................................................GAAGCTGTGAACGTTTCACTTGGAAATCTGCTTACGTATCCATTCGTGAGAGAAGGATTGGTGAAGAAAACATTGGCATTGAAGGGAGGTTACTATGATTTCGTGAAGGGTGGATTTGAGCTGTGGGGACTTGAGTTCGGACTTTCTCCTCCTCTTTCCGTATGAACTTAATTCAATTACCATTTGGCCCTCACAATTTCCTTCCTTTTTTTTTTTTTCGCCTGACAGTGCTTTTGCTTCGCAAAATCAACTGCGTGTATGTAGTTTGTATGTATTATGTATGTATGAATCAAATATGGAAGAGCACTCGTTGTTATATTTCTGAAATAAATAAATTGGAGACTACTTTTTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0236E02-u8qcS/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E365325" ref_strand="-" ref_description="SGN-E365325 [cLPT-2-B15]">
      <seq>atttgcacatcaatgcacagcttgtgaaaaggaagctgtgaacgtttcacttggaaatctgcttacgtatccattcgtgagagaaggattggtaaaaaaaacattggcattgaagggaggttactatgatttcgtaaagggtggatttgagctgtggggacttgagttcggtctttctcctcctctttccgtatgaacttaattcaattaccatttggccctcacaatttccttcctttttttggccagacagtacttttgcttcgcaaaatcaactgtgtgtatgttgtttgtatgtattatgtatgtatgaatcaaatatggaagagcactcgttgttatatttctgaaataaataaaatggagactacttttggtataaaaaaaaaaaaaaaaaaaaaaaaactcgagactagttctcc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0236E02-u8qcS/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0236E02.1" temp_strand="+" temp_description="C02HBa0236E02.1  AC215430.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0236E02 sequenced_by:kribb upload_account_name:korea">
        <position start="17383" stop="95696"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="17683" g_stop="17713" g_length="31"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="31" r_length="31" r_score="0.968"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="17714" i_stop="17793" i_length="80">
            <donor d_prob="1.000" d_score="0.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="17794" g_stop="18154" g_length="361"/>
          <reference_exon_boundary r_type="cDNA" r_start="32" r_stop="386" r_length="355" r_score="0.961"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="18155" i_stop="18522" i_length="368">
            <donor d_prob="0.000" d_score="0.94"/>
            <acceptor a_prob="0.000" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="18523" g_stop="18560" g_length="38"/>
          <reference_exon_boundary r_type="cDNA" r_start="387" r_stop="422" r_length="36" r_score="0.605"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0236E02.1" gen_strand="+" ref_id="SGN-E365325" ref_strand="-">
        <total_alignment_score>0.961</total_alignment_score>
        <cumulative_length_of_scored_exons>430</cumulative_length_of_scored_exons>
        <coverage percentage="1.019" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0236E02.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E365325" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="17683" e_stop="17713"/>
          <exon e_start="17794" e_stop="18154"/>
          <exon e_start="18523" e_stop="18560"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATTTGCACATCAATGCACAGCTTGTGAGAAGGTAAAATTCAAATTTAACTTTTTGATTATCAATTAATTACATATATAGCAGTATTTTATAATTGATGAAAAATGTTGCAGGAAGCTGTGAACGTTTCACTTGGAAATCTGCTTACGTATCCATTCGTGAGAGAAGGATTGGTGAAGAAAACATTGGCATTGAAGGGAGGTTACTATGATTTCGTGAAGGGTGGATTTGAGCTGTGGGGACTTGAGTTCGGTCTTTCTCCTCCTCTTTCCGTATGAACTTAATTCAATTACCATTTGGCCCTCACAATTTCCTTCCTTTTTTTTTTTTTCGCCTGACAGTACTTTTGCTTCGCAAAATCAACTGTGTGTATGTTGTTTGTATGTATTATGTATGTATGAATCAAATATGGAAGAGCACTCGTTGTTATATTTCTGAAATAAATAAAATGGAGACTACTTTTTGTATAAATACGTTTGTGGTGGGCTTTGGTAGGTAAAAGATGTGGCCAGTATACTGCACTGGAAGCTCATGTAGAGACAGAGAGATCGTCAAGCAACAAGAGGATTCCCAGATTTAATCTGTTATTCTTGCTCATGTAGACCAAAAATTGGCCATAATAATCTACAAACACTCTTTTCGGCTACAATTATACTAGTTTAACTTTCCATGATGCTTCTCTCATTTGTTAGTGTCAGACAACAATCCATTACAAAGCGGAAAATTTGTCTTAGTTTGCAAATCCTTTCAAGAGATTTAGGGTTCCACTCTAAAATGGGAAAGTTCGAATAAGTTGAAGCTAATGGATTGGGAATACCAAATGGAGTAATAATCTATATAAGAAAAAAAAAAGAAGCAAATCACCATGGAATATTAAAGA</genome_strand>
        <mrna_strand>ATTTGCACATCAATGCACAGCTTGTGAAAAG................................................................................GAAGCTGTGAACGTTTCACTTGGAAATCTGCTTACGTATCCATTCGTGAGAGAAGGATTGGTAAAAAAAACATTGGCATTGAAGGGAGGTTACTATGATTTCGTAAAGGGTGGATTTGAGCTGTGGGGACTTGAGTTCGGTCTTTCTCCTCCTCTTTCCGTATGAACTTAATTCAATTACCATTTGGCCCTCACAATTTCCTTCC------TTTTTTTGGCCAGACAGTACTTTTGCTTCGCAAAATCAACTGTGTGTATGTTGTTTGTATGTATTATGTATGTATGAATCAAATATGGAAGAGCACTCGTTGTTATATTTCTGAAATAAATAAAATGGAGACTACTTTTGGTATAAAAAA................................................................................................................................................................................................................................................................................................................................................................................AAAAAAAAAAAAAAAAAAACTCGA--GACTAGTTCTCC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0236E02-u8qcS/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E295997" ref_strand="+" ref_description="SGN-E295997 [cLET-27-I8]">
      <seq>ttgtgagaaggaagctgagaacgttttacttggaaatctgcttacgtatccattcgtgagagaaggattggtgaagaaaacattggcattgaagggaggttactatgatttcgtgaagggtggatttgagctgtggggacttgagtaaaagatgtggccagtatactgcactggaagctcatgtagagacagagagatcgtcaagcaacaagaggattcccagatttaatctgtt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0236E02-u8qcS/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0236E02.1" temp_strand="+" temp_description="C02HBa0236E02.1  AC215430.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0236E02 sequenced_by:kribb upload_account_name:korea">
        <position start="17490" stop="18566"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="17704" g_stop="17713" g_length="10"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="10" r_length="10" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="17714" i_stop="17793" i_length="80">
            <donor d_prob="1.000" d_score="0.00"/>
            <acceptor a_prob="0.997" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="17794" g_stop="17927" g_length="134"/>
          <reference_exon_boundary r_type="cDNA" r_start="11" r_stop="144" r_length="134" r_score="0.985"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="17928" i_stop="18175" i_length="248">
            <donor d_prob="0.000" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="18176" g_stop="18266" g_length="91"/>
          <reference_exon_boundary r_type="cDNA" r_start="145" r_stop="235" r_length="91" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0236E02.1" gen_strand="+" ref_id="SGN-E295997" ref_strand="+">
        <total_alignment_score>0.991</total_alignment_score>
        <cumulative_length_of_scored_exons>235</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0236E02.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E295997" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="17704" e_stop="17713"/>
          <exon e_start="17794" e_stop="17927"/>
          <exon e_start="18176" e_stop="18266"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTGTGAGAAGGTAAAATTCAAATTTAACTTTTTGATTATCAATTAATTACATATATAGCAGTATTTTATAATTGATGAAAAATGTTGCAGGAAGCTGTGAACGTTTCACTTGGAAATCTGCTTACGTATCCATTCGTGAGAGAAGGATTGGTGAAGAAAACATTGGCATTGAAGGGAGGTTACTATGATTTCGTGAAGGGTGGATTTGAGCTGTGGGGACTTGAGTTCGGTCTTTCTCCTCCTCTTTCCGTATGAACTTAATTCAATTACCATTTGGCCCTCACAATTTCCTTCCTTTTTTTTTTTTTCGCCTGACAGTACTTTTGCTTCGCAAAATCAACTGTGTGTATGTTGTTTGTATGTATTATGTATGTATGAATCAAATATGGAAGAGCACTCGTTGTTATATTTCTGAAATAAATAAAATGGAGACTACTTTTTGTATAAATACGTTTGTGGTGGGCTTTGGTAGGTAAAAGATGTGGCCAGTATACTGCACTGGAAGCTCATGTAGAGACAGAGAGATCGTCAAGCAACAAGAGGATTCCCAGATTTAATCTGTT</genome_strand>
        <mrna_strand>TTGTGAGAAG................................................................................GAAGCTGAGAACGTTTTACTTGGAAATCTGCTTACGTATCCATTCGTGAGAGAAGGATTGGTGAAGAAAACATTGGCATTGAAGGGAGGTTACTATGATTTCGTGAAGGGTGGATTTGAGCTGTGGGGACTTGA........................................................................................................................................................................................................................................................GTAAAAGATGTGGCCAGTATACTGCACTGGAAGCTCATGTAGAGACAGAGAGATCGTCAAGCAACAAGAGGATTCCCAGATTTAATCTGTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0236E02-u8qcS/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E288144" ref_strand="+" ref_description="SGN-E288144 [cLES-7-K16]">
      <seq>atgtgagaaggaagctgtgaacgtttcacttggaaatctgcttacgtatccattcgtgagagaaggattggtgaagaaaacattggcattgaagggaggttactatgatttcgtgaagggtggatttgagctgtggggacttgagttcggtctttctcctcctctttccgtatgaacttaattcaattaccatttggccctcacaatttccttcctttttttttttttcgcctgacagtacttttgcttcgcaaaatcaactgtgtgtatgttgtttgtatgtattatgtatgtatgaatcaaatatggaagagcactcgttgttatatttctgaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0236E02-u8qcS/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0236E02.1" temp_strand="+" temp_description="C02HBa0236E02.1  AC215430.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0236E02 sequenced_by:kribb upload_account_name:korea">
        <position start="17490" stop="18429"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="17704" g_stop="17713" g_length="10"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="10" r_length="10" r_score="0.900"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="17714" i_stop="17793" i_length="80">
            <donor d_prob="1.000" d_score="0.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="17794" g_stop="18130" g_length="337"/>
          <reference_exon_boundary r_type="cDNA" r_start="11" r_stop="347" r_length="337" r_score="0.991"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0236E02.1" gen_strand="+" ref_id="SGN-E288144" ref_strand="+">
        <total_alignment_score>0.991</total_alignment_score>
        <cumulative_length_of_scored_exons>347</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0236E02.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E288144" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="17704" e_stop="17713"/>
          <exon e_start="17794" e_stop="18130"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTGTGAGAAGGTAAAATTCAAATTTAACTTTTTGATTATCAATTAATTACATATATAGCAGTATTTTATAATTGATGAAAAATGTTGCAGGAAGCTGTGAACGTTTCACTTGGAAATCTGCTTACGTATCCATTCGTGAGAGAAGGATTGGTGAAGAAAACATTGGCATTGAAGGGAGGTTACTATGATTTCGTGAAGGGTGGATTTGAGCTGTGGGGACTTGAGTTCGGTCTTTCTCCTCCTCTTTCCGTATGAACTTAATTCAATTACCATTTGGCCCTCACAATTTCCTTCCTTTTTTTTTTTTTCGCCTGACAGTACTTTTGCTTCGCAAAATCAACTGTGTGTATGTTGTTTGTATGTATTATGTATGTATGAATCAAATATGGAAGAGCACTCGTTGTTATATTTCTGAAATAAATAAAAT</genome_strand>
        <mrna_strand>ATGTGAGAAG................................................................................GAAGCTGTGAACGTTTCACTTGGAAATCTGCTTACGTATCCATTCGTGAGAGAAGGATTGGTGAAGAAAACATTGGCATTGAAGGGAGGTTACTATGATTTCGTGAAGGGTGGATTTGAGCTGTGGGGACTTGAGTTCGGTCTTTCTCCTCCTCTTTCCGTATGAACTTAATTCAATTACCATTTGGCCCTCACAATTTCCTTCCTTTTTTTTTTTTTCGCCTGACAGTACTTTTGCTTCGCAAAATCAACTGTGTGTATGTTGTTTGTATGTATTATGTATGTATGAATCAAATATGGAAGAGCACTCGTTGTTATATTTCTGAAAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0236E02-u8qcS/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E234581" ref_strand="+" ref_description="SGN-E234581 [cLEL-6-P14](-)">
      <seq>cctgtgaacgtttcacttggaaatctgcttacgtatccattcgtgagagaaggattggtgaagaaaacattggcattgaagggaggttactatgatttcgtcaagggtggatttgagctgtggggacttgagttcggtctttctcctcctctttccgtatgaacttaattcaattaccatttggccctcacaatttccttcctttttttttttttcgcctgacagtacttttgcttcgcaaaatcaactgtgtgtatgttgtttgtatgtattatgtatgtatgaatcaaatacggaagagcactcgttgttatatttcttagaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0236E02-u8qcS/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0236E02.1" temp_strand="+" temp_description="C02HBa0236E02.1  AC215430.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0236E02 sequenced_by:kribb upload_account_name:korea">
        <position start="17498" stop="18429"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="17797" g_stop="18134" g_length="338"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="338" r_length="338" r_score="0.967"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0236E02.1" gen_strand="+" ref_id="SGN-E234581" ref_strand="+">
        <total_alignment_score>0.967</total_alignment_score>
        <cumulative_length_of_scored_exons>338</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0236E02.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E234581" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="17797" e_stop="18134"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCTGTGAACGTTTCACTTGGAAATCTGCTTACGTATCCATTCGTGAGAGAAGGATTGGTGAAGAAAACATTGGCATTGAAGGGAGGTTACTATGATTTCGTGAAGGGTGGATTTGAGCTGTGGGGACTTGAGTTCGGTCTTTCTCCTCCTCTTTCCGTATGAACTTAATTCAATTACCATTTGGCCCTCACAATTTCCTTCCTTTTTTTTTTTTTCGCCTGACAGTACTTTTGCTTCGCAAAATCAACTGTGTGTATGTTGTTTGTATGTATTATGTATGTATGAATCAAATATGGAAGAGCACTCGTTGTTATATTTCTGAAATAAATAAAATGGAG</genome_strand>
        <mrna_strand>CCTGTGAACGTTTCACTTGGAAATCTGCTTACGTATCCATTCGTGAGAGAAGGATTGGTGAAGAAAACATTGGCATTGAAGGGAGGTTACTATGATTTCGTCAAGGGTGGATTTGAGCTGTGGGGACTTGAGTTCGGTCTTTCTCCTCCTCTTTCCGTATGAACTTAATTCAATTACCATTTGGCCCTCACAATTTCCTTCCTTTTTTTTTTTTTCGCCTGACAGTACTTTTGCTTCGCAAAATCAACTGTGTGTATGTTGTTTGTATGTATTATGTATGTATGAATCAAATACGGAAGAGCACTCGTTGTTATATTTCTTAGAAAAAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0236E02-u8qcS/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E224538" ref_strand="+" ref_description="SGN-E224538 [cLEL-27-I17](-)">
      <seq>agggaggttactatgatttcgtaaagggtggatatcagctgtggggacttgagatcggtctttctcctcctctttcggtatggtcttaattcaatagccatttggccctcacaatttccttcctttttttttttttcgcctgacagtacttttgcttcgcaaaatcaactgtgtgtatgttgtttgtatgtattatgtatgtatcaatcatatatggtagagcacacgttgttatatttttgaaacaaatataatggagcctactttttgtataaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0236E02-u8qcS/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0236E02.1" temp_strand="+" temp_description="C02HBa0236E02.1  AC215430.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0236E02 sequenced_by:kribb upload_account_name:korea">
        <position start="17576" stop="126850"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="17876" g_stop="18154" g_length="279"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="279" r_length="279" r_score="0.932"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="18155" i_stop="18522" i_length="368">
            <donor d_prob="0.000" d_score="0.88"/>
            <acceptor a_prob="0.000" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="18523" g_stop="18534" g_length="12"/>
          <reference_exon_boundary r_type="cDNA" r_start="280" r_stop="291" r_length="12" r_score="0.917"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0236E02.1" gen_strand="+" ref_id="SGN-E224538" ref_strand="+">
        <total_alignment_score>0.932</total_alignment_score>
        <cumulative_length_of_scored_exons>291</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0236E02.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E224538" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="17876" e_stop="18154"/>
          <exon e_start="18523" e_stop="18534"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGGGAGGTTACTATGATTTCGTGAAGGGTGGATTTGAGCTGTGGGGACTTGAGTTCGGTCTTTCTCCTCCTCTTTCCGTATGAACTTAATTCAATTACCATTTGGCCCTCACAATTTCCTTCCTTTTTTTTTTTTTCGCCTGACAGTACTTTTGCTTCGCAAAATCAACTGTGTGTATGTTGTTTGTATGTATTATGTATGTATGAATCAAATATGGAAGAGCACTCGTTGTTATATTTCTGAAATAAATAAAATGGAGACTACTTTTTGTATAAATACGTTTGTGGTGGGCTTTGGTAGGTAAAAGATGTGGCCAGTATACTGCACTGGAAGCTCATGTAGAGACAGAGAGATCGTCAAGCAACAAGAGGATTCCCAGATTTAATCTGTTATTCTTGCTCATGTAGACCAAAAATTGGCCATAATAATCTACAAACACTCTTTTCGGCTACAATTATACTAGTTTAACTTTCCATGATGCTTCTCTCATTTGTTAGTGTCAGACAACAATCCATTACAAAGCGGAAAATTTGTCTTAGTTTGCAAATCCTTTCAAGAGATTTAGGGTTCCACTCTAAAATGGGAAAGTTCGAATAAGTTGAAGCTAATGGATTGGGAATACCAAATGGAGTAATAATCTATATAAGAAAAAAAAAAGA</genome_strand>
        <mrna_strand>AGGGAGGTTACTATGATTTCGTAAAGGGTGGATATCAGCTGTGGGGACTTGAGATCGGTCTTTCTCCTCCTCTTTCGGTATGGTCTTAATTCAATAGCCATTTGGCCCTCACAATTTCCTTCCTTTTTTTTTTTTTCGCCTGACAGTACTTTTGCTTCGCAAAATCAACTGTGTGTATGTTGTTTGTATGTATTATGTATGTATCAATCATATATGGTAGAGCACACGTTGTTATATTTTTGAAACAAATATAATGGAGCCTACTTTTTGTATAAAAAA................................................................................................................................................................................................................................................................................................................................................................................AAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0236E02-u8qcS/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E289268" ref_strand="+" ref_description="SGN-E289268 [cLES-18-K16]">
      <seq>ttttttcagaaatataacaacgagtgctcttccatatttgattcatacatacataatacatacaaacaacatacacacagttgattttgcgaagcaaaagtactgtcaggcgaaaaaaaaaaaaaggaaggaaattgtgagggccaaatggtaattgaattaagttcatacggaaagaggaggagaaagaccgaactcaagtccccacagctcaaatccaccctt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0236E02-u8qcS/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0236E02.1" temp_strand="-" temp_description="C02HBa0236E02.1  AC215430.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0236E02 sequenced_by:kribb upload_account_name:korea">
        <position start="18424" stop="17599"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="18123" g_stop="17899" g_length="225"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="225" r_length="225" r_score="0.996"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0236E02.1" gen_strand="-" ref_id="SGN-E289268" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>225</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0236E02.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E289268" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="18123" e_stop="17899"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTATTTCAGAAATATAACAACGAGTGCTCTTCCATATTTGATTCATACATACATAATACATACAAACAACATACACACAGTTGATTTTGCGAAGCAAAAGTACTGTCAGGCGAAAAAAAAAAAAAGGAAGGAAATTGTGAGGGCCAAATGGTAATTGAATTAAGTTCATACGGAAAGAGGAGGAGAAAGACCGAACTCAAGTCCCCACAGCTCAAATCCACCCTT</genome_strand>
        <mrna_strand>TTTTTTCAGAAATATAACAACGAGTGCTCTTCCATATTTGATTCATACATACATAATACATACAAACAACATACACACAGTTGATTTTGCGAAGCAAAAGTACTGTCAGGCGAAAAAAAAAAAAAGGAAGGAAATTGTGAGGGCCAAATGGTAATTGAATTAAGTTCATACGGAAAGAGGAGGAGAAAGACCGAACTCAAGTCCCCACAGCTCAAATCCACCCTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0236E02-u8qcS/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E297630" ref_strand="+" ref_description="SGN-E297630 [cLET-28-A24]">
      <seq>tgagctgtggggacttgagttcggtctttctcctcctctttccgtatgaacttaattcaattaccatttggccctcacaatttccttcctttttttttttttcgcctgacagtacttttgcttcgcaaaatcaactgtgtgtatgttgtttgtatgtattatgtatgtatgaatcaaatatggaagagcactcgttgttatatttctgaaataaataaaatggagactactttttgtataaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0236E02-u8qcS/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0236E02.1" temp_strand="+" temp_description="C02HBa0236E02.1  AC215430.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0236E02 sequenced_by:kribb upload_account_name:korea">
        <position start="17610" stop="18453"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="17910" g_stop="18159" g_length="250"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="250" r_length="250" r_score="0.972"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0236E02.1" gen_strand="+" ref_id="SGN-E297630" ref_strand="+">
        <total_alignment_score>0.972</total_alignment_score>
        <cumulative_length_of_scored_exons>250</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0236E02.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E297630" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="17910" e_stop="18159"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGAGCTGTGGGGACTTGAGTTCGGTCTTTCTCCTCCTCTTTCCGTATGAACTTAATTCAATTACCATTTGGCCCTCACAATTTCCTTCCTTTTTTTTTTTTTCGCCTGACAGTACTTTTGCTTCGCAAAATCAACTGTGTGTATGTTGTTTGTATGTATTATGTATGTATGAATCAAATATGGAAGAGCACTCGTTGTTATATTTCTGAAATAAATAAAATGGAGACTACTTTTTGTATAAATACGTTTG</genome_strand>
        <mrna_strand>TGAGCTGTGGGGACTTGAGTTCGGTCTTTCTCCTCCTCTTTCCGTATGAACTTAATTCAATTACCATTTGGCCCTCACAATTTCCTTCCTTTTTTTTTTTTTCGCCTGACAGTACTTTTGCTTCGCAAAATCAACTGTGTGTATGTTGTTTGTATGTATTATGTATGTATGAATCAAATATGGAAGAGCACTCGTTGTTATATTTCTGAAATAAATAAAATGGAGACTACTTTTTGTATAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0236E02-u8qcS/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E287260" ref_strand="+" ref_description="SGN-E287260 [cLES-15-K1]">
      <seq>tcctctttccgtatgaacttaattcaattaccatttggccctcacaatttccttccttttttttttttcgcctgacagtacttttgcttcgcaaaatcaactgtgtgtatgttgtttgtatgtattatgtatgtatgaatcaaatatggaagagcactcgttgttatatttctgaaataaataaaatggagactactttttgtaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0236E02-u8qcS/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0236E02.1" temp_strand="+" temp_description="C02HBa0236E02.1  AC215430.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0236E02 sequenced_by:kribb upload_account_name:korea">
        <position start="17643" stop="18453"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="17943" g_stop="18156" g_length="214"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="213" r_length="213" r_score="0.972"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0236E02.1" gen_strand="+" ref_id="SGN-E287260" ref_strand="+">
        <total_alignment_score>0.972</total_alignment_score>
        <cumulative_length_of_scored_exons>214</cumulative_length_of_scored_exons>
        <coverage percentage="1.005" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0236E02.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E287260" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="17943" e_stop="18156"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCCTCTTTCCGTATGAACTTAATTCAATTACCATTTGGCCCTCACAATTTCCTTCCTTTTTTTTTTTTTCGCCTGACAGTACTTTTGCTTCGCAAAATCAACTGTGTGTATGTTGTTTGTATGTATTATGTATGTATGAATCAAATATGGAAGAGCACTCGTTGTTATATTTCTGAAATAAATAAAATGGAGACTACTTTTTGTATAAATACGT</genome_strand>
        <mrna_strand>TCCTCTTTCCGTATGAACTTAATTCAATTACCATTTGGCCCTCACAATTTCCTTCC-TTTTTTTTTTTTCGCCTGACAGTACTTTTGCTTCGCAAAATCAACTGTGTGTATGTTGTTTGTATGTATTATGTATGTATGAATCAAATATGGAAGAGCACTCGTTGTTATATTTCTGAAATAAATAAAATGGAGACTACTTTTTGTAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0236E02-u8qcS/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E278374" ref_strand="+" ref_description="SGN-E278374 [cLEL-2-P23](-)">
      <seq>agtgcatgccacaaaaatactatccataagcttcttcccgtagttggactggtcaccggaagaggcatagttagagcaaatacgccgagcgcagaccacactgccggagaaaccaggtattttccggcagagtaaagacttagcaagttgaaatcgatctgagccggaaaatttccgtgccggagttgtggaggaccaagcagaagaagctagggagctccgaagatgcagccattgttaagaagacaactggtgagaggcacgagctcgtgc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0236E02-u8qcS/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0236E02.1" temp_strand="-" temp_description="C02HBa0236E02.1  AC215430.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0236E02 sequenced_by:kribb upload_account_name:korea">
        <position start="21043" stop="20184"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="20743" g_stop="20472" g_length="272"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="273" r_length="273" r_score="0.949"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0236E02.1" gen_strand="-" ref_id="SGN-E278374" ref_strand="+">
        <total_alignment_score>0.949</total_alignment_score>
        <cumulative_length_of_scored_exons>272</cumulative_length_of_scored_exons>
        <coverage percentage="0.996" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0236E02.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E278374" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="20743" e_stop="20472"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGTGCATGCCACAAAAATACTATCCATAAGCTTCTTCCCGTAGTTGGACTGGTCACCGGAAGAGGCATAGTTAGAGCAAATACGCCGAGCGCAGACCACACTGCCGGAGAAACCAGGTATTTTCCGGCAGAGTAAAGACTTAGCAAGTTGAAATCGATCTGAGCCGGAAAATTTCCGTGCCGGAGTTGTGGAGAAGCAAGCAGAAGAAGCTAGGGAG-TGTGAAGATGCAGCCATTGTTAAGAAGACAACTGGTGAGAGCAAAGAGGAAGACC</genome_strand>
        <mrna_strand>AGTGCATGCCACAAAAATACTATCCATAAGCTTCTTCCCGTAGTTGGACTGGTCACCGGAAGAGGCATAGTTAGAGCAAATACGCCGAGCGCAGACCACACTGCCGGAGAAACCAGGTATTTTCCGGCAGAGTAAAGACTTAGCAAGTTGAAATCGATCTGAGCCGGAAAATTTCCGTGCCGGAGTTGTGGAGGACCAAGCAGAAGAAGCTAGGGAGCTCCGAAGATGCAGCCATTGTTAAGAAGACAACTGGTGAGAGGCACGAGCTCGTGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0236E02-u8qcS/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E332335" ref_strand="+" ref_description="SGN-E332335 [cTOD-17-D14]">
      <seq>tcctctttgctctcaccagttgtcttcttaacaatggctgcatcttcacactccctagcttcttctgcttgcttctccacaactccggcacggaaattttccggctcagatcgatttcaacttgctaagtctttactctgccggaaaatacctggtttctccggcagtgtggtctgcgctcggcgtatttgctctaactatgcctcttccggtgaccagtccaactacgggaagaagcttatggatagtatttttgtggcatgcacttccgttgccttgtctttctctctctatatagcagacgttgaccctgcctcggcttttgtagtcacttcacccaggaaattgcagactgatgaacttgctactgttcgtctcttccaagagaatacaccttccgttgtgtatattactaatcttgcttccaggcaggatatgttcacactggatgtatttgaggtgcctcaagggtctgggtcaggcttcgtctgggataaaaatggaaatattgttactaattatcatgtgattcgaggtgcttctgatctcagagtgactcttgctgatcaaactacttatgatgcaaaagttgttggatttgaccaagataaagatngtgctgtgttgcatattgatgcacaaaagacaagttgcgacctataccaattggcgtatcggcagacttgctcgttggtcaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0236E02-u8qcS/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0236E02.1" temp_strand="+" temp_description="C02HBa0236E02.1  AC215430.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0236E02 sequenced_by:kribb upload_account_name:korea">
        <position start="20177" stop="21967"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="20477" g_stop="20904" g_length="428"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="428" r_length="428" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="20905" i_stop="21087" i_length="183">
            <donor d_prob="0.964" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="21088" g_stop="21210" g_length="123"/>
          <reference_exon_boundary r_type="cDNA" r_start="429" r_stop="551" r_length="123" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="21211" i_stop="21517" i_length="307">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="21518" g_stop="21667" g_length="150"/>
          <reference_exon_boundary r_type="cDNA" r_start="552" r_stop="700" r_length="149" r_score="0.980"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0236E02.1" gen_strand="+" ref_id="SGN-E332335" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>701</cumulative_length_of_scored_exons>
        <coverage percentage="1.001" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0236E02.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E332335" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="20477" e_stop="20904"/>
          <exon e_start="21088" e_stop="21210"/>
          <exon e_start="21518" e_stop="21667"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCCTCTTTGCTCTCACCAGTTGTCTTCTTAACAATGGCTGCATCTTCACACTCCCTAGCTTCTTCTGCTTGCTTCTCCACAACTCCGGCACGGAAATTTTCCGGCTCAGATCGATTTCAACTTGCTAAGTCTTTACTCTGCCGGAAAATACCTGGTTTCTCCGGCAGTGTGGTCTGCGCTCGGCGTATTTGCTCTAACTATGCCTCTTCCGGTGACCAGTCCAACTACGGGAAGAAGCTTATGGATAGTATTTTTGTGGCATGCACTTCCGTTGCCTTGTCTTTCTCTCTCTATATAGCAGACGTTGACCCTGCCTCGGCTTTTGTAGTCACTTCACCCAGGAAATTGCAGACTGATGAACTTGCTACTGTTCGTCTCTTCCAAGAGAATACACCTTCCGTTGTGTATATTACTAATCTTGCTTCCAGGTGATCTATCAATGAGGATGGTCCTTTTTTTTTTTTCCTTATATGTTAGTAATTCACGTGCATTTGAGTTTGTAGATATAGTGCTAGATGAAAGTCTGCTAGATGTATTTCCTGTTATTGTAATTGCCGTCCACCTTTGTTTTTCCGGTTTGGTTAATTTGGATTCCGTTTGTGATATAATAGGCAGGATATGTTCACACTGGATGTATTTGAGGTGCCTCAAGGGTCTGGGTCAGGCTTCGTCTGGGATAAAAATGGAAATATTGTTACTAATTATCATGTGATTCGAGGTGCTTCTGATCTCAGGTGAGTTAATTGGCAACTGGAAACACATTTTTCTGATTTAAACAAGTTTCTATTTATTAGTATCTGCCTAAATGATTTCAGTTTCAAGTTCCTTGCCACAGTCCTCATATTATTTCTATATGCTATCTGACTGCTCTTATACTAGCATGATTCTACAACTTCGATTGTCTTAGCTAATCGTGGAGTATTAGGAAACCTGCAATTTTTTTCATGATATGAATTTGTTTGGATTGAACAGTCTGTTAGTTGCTTAATTATGGTTTTACGCTCTAATTGCTAGTACTAATATAGTCTTAGTCTTGCTCAGAGTGACTCTTGCTGATCAAACTACTTATGATGCAAAAGTTGTTGGATTTGACCAAGATAAAGATGTTGCTGTGTTGCATATTGATGCACCAAAAGACAAGTTGCGACCTATACCAATTGGCGTATCGGCAGACTTGCTCGTTGGTCAAAA</genome_strand>
        <mrna_strand>TCCTCTTTGCTCTCACCAGTTGTCTTCTTAACAATGGCTGCATCTTCACACTCCCTAGCTTCTTCTGCTTGCTTCTCCACAACTCCGGCACGGAAATTTTCCGGCTCAGATCGATTTCAACTTGCTAAGTCTTTACTCTGCCGGAAAATACCTGGTTTCTCCGGCAGTGTGGTCTGCGCTCGGCGTATTTGCTCTAACTATGCCTCTTCCGGTGACCAGTCCAACTACGGGAAGAAGCTTATGGATAGTATTTTTGTGGCATGCACTTCCGTTGCCTTGTCTTTCTCTCTCTATATAGCAGACGTTGACCCTGCCTCGGCTTTTGTAGTCACTTCACCCAGGAAATTGCAGACTGATGAACTTGCTACTGTTCGTCTCTTCCAAGAGAATACACCTTCCGTTGTGTATATTACTAATCTTGCTTCCAG.......................................................................................................................................................................................GCAGGATATGTTCACACTGGATGTATTTGAGGTGCCTCAAGGGTCTGGGTCAGGCTTCGTCTGGGATAAAAATGGAAATATTGTTACTAATTATCATGTGATTCGAGGTGCTTCTGATCTCAG...................................................................................................................................................................................................................................................................................................................AGTGACTCTTGCTGATCAAACTACTTATGATGCAAAAGTTGTTGGATTTGACCAAGATAAAGATNGTGCTGTGTTGCATATTGATGCA-CAAAAGACAAGTTGCGACCTATACCAATTGGCGTATCGGCAGACTTGCTCGTTGGTCAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0236E02-u8qcS/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E729683" ref_strand="+" ref_description="SGN-E729683 [LA21DB08]">
      <seq>ctctttgctctcaccagttgtcttcttaacaatggctgcatcttcacactccctagcttcttctgcttgcttctccacaactccggcacggaaattttccggctcagatcgatttcaacttgctaagtctttactctgccggaaaatacctggtttctccggcagtgtggtctgcgctcggcgtatttgctctaactatgcctcttccggtgaccagtccaactacgggaagaagcttatggatagtatttttgtggcatgcacttccgttgccttgtctttctctctctatatagcagacgttgaccctgcctcggcttttgtagtcacttcacccaggaaattgcagactgatgaacttgctactgttcgtctcttccaagagaatacaccttccgttgtgtatattactaatcttgcttccaggcaggatatgttcacactggatgtatttgaggtgcctcaagggtctgggtcaggcttcgtctgggataaaaatggaaatattgttactaattatcatgtgattcgaggtgcttctgatctcagagtgactcttgctgatcaaactacttatgatgcaaaagttgttggattttcaattccagttgatactgtcagtggcattgttgatcagttagtgcagtttgggaaagtcacaaggccaattttgggcataaagtttgcacctgatcagtccgttgagcaactgggagtcactggagtacttgtcctggatgctcctccaaatggtcctgcaggcaaagcaggtcttctacctactaaacgtgattcctacggaagacttattttaggtgatataatcacatctataaatggaaagaaggtctctaatgg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0236E02-u8qcS/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0236E02.1" temp_strand="+" temp_description="C02HBa0236E02.1  AC215430.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0236E02 sequenced_by:kribb upload_account_name:korea">
        <position start="20179" stop="23986"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="20479" g_stop="20904" g_length="426"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="426" r_length="426" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="20905" i_stop="21087" i_length="183">
            <donor d_prob="0.964" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="21088" g_stop="21210" g_length="123"/>
          <reference_exon_boundary r_type="cDNA" r_start="427" r_stop="549" r_length="123" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="21211" i_stop="21517" i_length="307">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.000" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="21518" g_stop="21555" g_length="38"/>
          <reference_exon_boundary r_type="cDNA" r_start="550" r_stop="587" r_length="38" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="21556" i_stop="23033" i_length="1478">
            <donor d_prob="0.000" d_score="0.00"/>
            <acceptor a_prob="0.463" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="23034" g_stop="23062" g_length="29"/>
          <reference_exon_boundary r_type="cDNA" r_start="588" r_stop="616" r_length="29" r_score="0.966"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="23063" i_stop="23244" i_length="182">
            <donor d_prob="0.996" d_score="0.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="23245" g_stop="23397" g_length="153"/>
          <reference_exon_boundary r_type="cDNA" r_start="617" r_stop="769" r_length="153" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="23398" i_stop="23597" i_length="200">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.908" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="23598" g_stop="23686" g_length="89"/>
          <reference_exon_boundary r_type="cDNA" r_start="770" r_stop="858" r_length="89" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0236E02.1" gen_strand="+" ref_id="SGN-E729683" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>858</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0236E02.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E729683" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="20479" e_stop="20904"/>
          <exon e_start="21088" e_stop="21210"/>
          <exon e_start="21518" e_stop="21555"/>
          <exon e_start="23034" e_stop="23062"/>
          <exon e_start="23245" e_stop="23397"/>
          <exon e_start="23598" e_stop="23686"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTCTTTGCTCTCACCAGTTGTCTTCTTAACAATGGCTGCATCTTCACACTCCCTAGCTTCTTCTGCTTGCTTCTCCACAACTCCGGCACGGAAATTTTCCGGCTCAGATCGATTTCAACTTGCTAAGTCTTTACTCTGCCGGAAAATACCTGGTTTCTCCGGCAGTGTGGTCTGCGCTCGGCGTATTTGCTCTAACTATGCCTCTTCCGGTGACCAGTCCAACTACGGGAAGAAGCTTATGGATAGTATTTTTGTGGCATGCACTTCCGTTGCCTTGTCTTTCTCTCTCTATATAGCAGACGTTGACCCTGCCTCGGCTTTTGTAGTCACTTCACCCAGGAAATTGCAGACTGATGAACTTGCTACTGTTCGTCTCTTCCAAGAGAATACACCTTCCGTTGTGTATATTACTAATCTTGCTTCCAGGTGATCTATCAATGAGGATGGTCCTTTTTTTTTTTTCCTTATATGTTAGTAATTCACGTGCATTTGAGTTTGTAGATATAGTGCTAGATGAAAGTCTGCTAGATGTATTTCCTGTTATTGTAATTGCCGTCCACCTTTGTTTTTCCGGTTTGGTTAATTTGGATTCCGTTTGTGATATAATAGGCAGGATATGTTCACACTGGATGTATTTGAGGTGCCTCAAGGGTCTGGGTCAGGCTTCGTCTGGGATAAAAATGGAAATATTGTTACTAATTATCATGTGATTCGAGGTGCTTCTGATCTCAGGTGAGTTAATTGGCAACTGGAAACACATTTTTCTGATTTAAACAAGTTTCTATTTATTAGTATCTGCCTAAATGATTTCAGTTTCAAGTTCCTTGCCACAGTCCTCATATTATTTCTATATGCTATCTGACTGCTCTTATACTAGCATGATTCTACAACTTCGATTGTCTTAGCTAATCGTGGAGTATTAGGAAACCTGCAATTTTTTTCATGATATGAATTTGTTTGGATTGAACAGTCTGTTAGTTGCTTAATTATGGTTTTACGCTCTAATTGCTAGTACTAATATAGTCTTAGTCTTGCTCAGAGTGACTCTTGCTGATCAAACTACTTATGATGCAAAAGTTGTTGGATTTGACCAAGATAAAGATGTTGCTGTGTTGCATATTGATGCACCAAAAGACAAGTTGCGACCTATACCAATTGGCGTATCGGCAGACTTGCTCGTTGGTCAAAAAGTATTTGCTATTGGAAATCCAGTATGTGACGAAATACAAACCTGCTAGAGAATTCTGTTCATGTAATAATAGTACTTTTATCTGCTCTGTTGTCCCTTCTCTAAACCTAGTTTGAGCCATTCTATATTCAGCTTTCGCTTTAGAGGAAAACTATCGTCTTGCAGGCGTTCATGAGCATTACAACAATTAGAAAGTATTAATTTGCATATAGAATGCTAGTGCATTTTGTTATCAATAAAATTTGTGCAAGTAAGGAAAAAAACCAACTGACAGCGAGTAAGGAAAAAAAACAACTGATAGCAAGTACAACTTAGTTCAGTCTTCTGGTTCAACTGCTTGCTTGTAAGCGCACCTTCTTCTCCAGCTAAAGAATCAGTATCTGAAAGTTGGCTGTTACTTCTGAACATTCATCGCCTGCTAATATTTTTAACTGCTTCTTTTCCCATTAGTTTAAAGCATAACAATTCCCCCCCTGTAGTGCTCCAACTTCTGCCAAAATGTGTCACTGACTTGCACTTAAATCAAATTACTTTTTAAGGGCCCTAAAACAATTGTTGACTTACACATTGAAAATCTCTTGTTGCAATGAGTATATGTTTCTTGTGTTTAGGTACCCCACCACTTCACACCTCTTTTTCCTCTTTATTCATATAAATTTACTATAAAACATGAATATTTTACTTCTCTTTTATGTTTCATATGTTAAACACATGATGAATGATTTATAATGTAAATATCTTTGCAGTTTGGACTTGATCATACACTCACCACTGGTGTAATCAGGTATTTAGACATTTCATTTATGGTGTGCAGGTTCCTAATGTTCAGATATTCCAGTGAAATGGTGTTAACTATGTTTCTGTGAAGATAGGAGATGAAATAAATGAATCTAGCCACTCAAAGTCGTGGTAAAAATGACGTTAACTTCTTCCATTGTTTAAAACGGAGATGAAGTAGAGAATTTTGTTTAATCTTTTCCGTGTATTCAACTGTAAGACTAGCCTTGTGATGTTGACGTGGTTGTCACTGTTGAGTGCCTTGCACCCATAAATTCCAAGAAGCAAACATAAATACTAACCATATGTCATGGTAAATGGATACATATGCATAAGCAAGCTGTGTTGGATATGGATTAACTTAATGCTATGGATCATGCATATTCTTTAACATCACTGATCAATTTATATGTTTCTAGTGGGCTTAGGAGAGAAATCAATTCTGCGGCTACTGGCCGCCCAATCCAAGATGTTATTCAGACAGATGCAGCAATCAATCCTGGTAACAGTGGAGGGCCACTTCTAGATAGTTCTGGAAATCTTATTGGAATAAATACTGCTATATATTCTCCTTCCGGTGCATCATCAGGTGTTGGATTTTCAATTCCAGTTGATACTGTAAGTTGTTATTTGTCTTTCAGAATTTTATTATTTGCAATGCTGATTGAAACTTTTAGGTTAAACATACTTCCCCATATAAAGCAAACTGATTTATTACACCCTGTGGTTCAGAAAGTTGCCCTTGCTTCTACTACGATGTGGTAGTCTCTCCCTGATGATTTTGATTTTTACCTATTCAGGTCAGTGGCATTGTTGATCAGTTAGTGCAGTTTGGGAAAGTCACAAGGCCAATTTTGGGCATAAAGTTTGCACCTGATCAGTCCGTTGAGCAACTGGGAGTCACTGGAGTACTTGTCCTGGATGCTCCTCCAAATGGTCCTGCAGGCAAAGCAGTATGTTATTTCCTGTATCTTTTCTCTTGACATTCCTTACCAGTTTCTCCTTCCTTTTATACACTATAATTATCAGCAGTTTCCACCAGTTATATCACCCTACCGATTTTCTTTCATGTGATTGTTTGTACAAGCCAGTATAAATTTGTGACCGACATGATGAGAAACCGAATATGAGATGTTAAATCTTGTAAATGCAGGGTCTTCTACCTACTAAACGTGATTCCTACGGAAGACTTATTTTAGGTGATATAATCACATCTATAAATGGAAAGAAGGTCTCTAATGG</genome_strand>
        <mrna_strand>CTCTTTGCTCTCACCAGTTGTCTTCTTAACAATGGCTGCATCTTCACACTCCCTAGCTTCTTCTGCTTGCTTCTCCACAACTCCGGCACGGAAATTTTCCGGCTCAGATCGATTTCAACTTGCTAAGTCTTTACTCTGCCGGAAAATACCTGGTTTCTCCGGCAGTGTGGTCTGCGCTCGGCGTATTTGCTCTAACTATGCCTCTTCCGGTGACCAGTCCAACTACGGGAAGAAGCTTATGGATAGTATTTTTGTGGCATGCACTTCCGTTGCCTTGTCTTTCTCTCTCTATATAGCAGACGTTGACCCTGCCTCGGCTTTTGTAGTCACTTCACCCAGGAAATTGCAGACTGATGAACTTGCTACTGTTCGTCTCTTCCAAGAGAATACACCTTCCGTTGTGTATATTACTAATCTTGCTTCCAG.......................................................................................................................................................................................GCAGGATATGTTCACACTGGATGTATTTGAGGTGCCTCAAGGGTCTGGGTCAGGCTTCGTCTGGGATAAAAATGGAAATATTGTTACTAATTATCATGTGATTCGAGGTGCTTCTGATCTCAG...................................................................................................................................................................................................................................................................................................................AGTGACTCTTGCTGATCAAACTACTTATGATGCAAAAG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTGTTGGATTTTCAATTCCAGTTGATACT......................................................................................................................................................................................GTCAGTGGCATTGTTGATCAGTTAGTGCAGTTTGGGAAAGTCACAAGGCCAATTTTGGGCATAAAGTTTGCACCTGATCAGTCCGTTGAGCAACTGGGAGTCACTGGAGTACTTGTCCTGGATGCTCCTCCAAATGGTCCTGCAGGCAAAGCA........................................................................................................................................................................................................GGTCTTCTACCTACTAAACGTGATTCCTACGGAAGACTTATTTTAGGTGATATAATCACATCTATAAATGGAAAGAAGGTCTCTAATGG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0236E02-u8qcS/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E329180" ref_strand="+" ref_description="SGN-E329180 [cTOD-2-H23]">
      <seq>tctttgctctcaccagttgtcttcttaacaatggctgcatcttcacactccctagcttcttctgcttgcttctccacaactccggcacggaaattttccggctcagatcgatttcaacttgctaagtctttactctgccggaaaatacctggtttctccggcagtgtggtctgcgctcggcgtatttgctctaactatgcctcttccggtgaccagtccaactacgggaagaagcttatggatagtatttttgtggcatgcacttccgttgccttgtctttctctctctatatagcagacgttgaccctgcctcggcttttgtagtcacttcacccaggaaattgcagactgatgaacttgctactgttcgtctc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0236E02-u8qcS/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0236E02.1" temp_strand="+" temp_description="C02HBa0236E02.1  AC215430.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0236E02 sequenced_by:kribb upload_account_name:korea">
        <position start="20180" stop="21154"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="20480" g_stop="20854" g_length="375"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="375" r_length="375" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0236E02.1" gen_strand="+" ref_id="SGN-E329180" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>375</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0236E02.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E329180" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="20480" e_stop="20854"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCTTTGCTCTCACCAGTTGTCTTCTTAACAATGGCTGCATCTTCACACTCCCTAGCTTCTTCTGCTTGCTTCTCCACAACTCCGGCACGGAAATTTTCCGGCTCAGATCGATTTCAACTTGCTAAGTCTTTACTCTGCCGGAAAATACCTGGTTTCTCCGGCAGTGTGGTCTGCGCTCGGCGTATTTGCTCTAACTATGCCTCTTCCGGTGACCAGTCCAACTACGGGAAGAAGCTTATGGATAGTATTTTTGTGGCATGCACTTCCGTTGCCTTGTCTTTCTCTCTCTATATAGCAGACGTTGACCCTGCCTCGGCTTTTGTAGTCACTTCACCCAGGAAATTGCAGACTGATGAACTTGCTACTGTTCGTCTC</genome_strand>
        <mrna_strand>TCTTTGCTCTCACCAGTTGTCTTCTTAACAATGGCTGCATCTTCACACTCCCTAGCTTCTTCTGCTTGCTTCTCCACAACTCCGGCACGGAAATTTTCCGGCTCAGATCGATTTCAACTTGCTAAGTCTTTACTCTGCCGGAAAATACCTGGTTTCTCCGGCAGTGTGGTCTGCGCTCGGCGTATTTGCTCTAACTATGCCTCTTCCGGTGACCAGTCCAACTACGGGAAGAAGCTTATGGATAGTATTTTTGTGGCATGCACTTCCGTTGCCTTGTCTTTCTCTCTCTATATAGCAGACGTTGACCCTGCCTCGGCTTTTGTAGTCACTTCACCCAGGAAATTGCAGACTGATGAACTTGCTACTGTTCGTCTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0236E02-u8qcS/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E704574" ref_strand="+" ref_description="SGN-E704574 [FA24CF10]">
      <seq>ctttgctctcaccagttgtcttcttaacaatggctgcatcttcacactccctagcttcttctgcttgcttctccacaactccggcacggaaattttccggctcagatcgatttcaacttgctaagtctttactctgccggaaaatacctggtttctccggcagtgtggtctgcgctcggcgtatttgctctaactatgcctcttccggtgaccagtccaactacgggaagaagcttatggatagtatttttgtggcatgcacttccgttgccttgtctttctctctctatatagcagacgttgaccctgcctcggcttttgtagtcacttcacccaggaaattgcagactgatgaacttgctactgttcgtctcttccaagagaatacaccttccgttgtgtatattactaatcttgcttccaggcaggatatgttcacactggatgtatttgaggtgcctcaagggtctgggtcaggcttcgtctgggataaaaatggaaatattgttactaattatcatgtgattcgaggtgcttctgatctcagagtgactcttgctgatcaaactacttatgatgcaaaagttgttggatttgaccaagataaagatgttgctgtgttgcatattgatgcaccaaaagacaagttgcgacctataccaattggcgtatcggcagacttgctcgttggtcaaaaagtatttgctattggaaatccatttggacttgatcatacactcaccactggtgtaatcagtgggcttaggagagaaatcaattctgcg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0236E02-u8qcS/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0236E02.1" temp_strand="+" temp_description="C02HBa0236E02.1  AC215430.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0236E02 sequenced_by:kribb upload_account_name:korea">
        <position start="20181" stop="23191"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="20481" g_stop="20904" g_length="424"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="424" r_length="424" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="20905" i_stop="21087" i_length="183">
            <donor d_prob="0.964" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="21088" g_stop="21210" g_length="123"/>
          <reference_exon_boundary r_type="cDNA" r_start="425" r_stop="547" r_length="123" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="21211" i_stop="21517" i_length="307">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="21518" g_stop="21689" g_length="172"/>
          <reference_exon_boundary r_type="cDNA" r_start="548" r_stop="719" r_length="172" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="21690" i_stop="22413" i_length="724">
            <donor d_prob="0.928" d_score="1.00"/>
            <acceptor a_prob="0.991" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="22414" g_stop="22451" g_length="38"/>
          <reference_exon_boundary r_type="cDNA" r_start="720" r_stop="757" r_length="38" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="22452" i_stop="22863" i_length="412">
            <donor d_prob="0.968" d_score="0.00"/>
            <acceptor a_prob="0.886" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="22864" g_stop="22891" g_length="28"/>
          <reference_exon_boundary r_type="cDNA" r_start="758" r_stop="785" r_length="28" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0236E02.1" gen_strand="+" ref_id="SGN-E704574" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>785</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0236E02.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E704574" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="20481" e_stop="20904"/>
          <exon e_start="21088" e_stop="21210"/>
          <exon e_start="21518" e_stop="21689"/>
          <exon e_start="22414" e_stop="22451"/>
          <exon e_start="22864" e_stop="22891"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTTTGCTCTCACCAGTTGTCTTCTTAACAATGGCTGCATCTTCACACTCCCTAGCTTCTTCTGCTTGCTTCTCCACAACTCCGGCACGGAAATTTTCCGGCTCAGATCGATTTCAACTTGCTAAGTCTTTACTCTGCCGGAAAATACCTGGTTTCTCCGGCAGTGTGGTCTGCGCTCGGCGTATTTGCTCTAACTATGCCTCTTCCGGTGACCAGTCCAACTACGGGAAGAAGCTTATGGATAGTATTTTTGTGGCATGCACTTCCGTTGCCTTGTCTTTCTCTCTCTATATAGCAGACGTTGACCCTGCCTCGGCTTTTGTAGTCACTTCACCCAGGAAATTGCAGACTGATGAACTTGCTACTGTTCGTCTCTTCCAAGAGAATACACCTTCCGTTGTGTATATTACTAATCTTGCTTCCAGGTGATCTATCAATGAGGATGGTCCTTTTTTTTTTTTCCTTATATGTTAGTAATTCACGTGCATTTGAGTTTGTAGATATAGTGCTAGATGAAAGTCTGCTAGATGTATTTCCTGTTATTGTAATTGCCGTCCACCTTTGTTTTTCCGGTTTGGTTAATTTGGATTCCGTTTGTGATATAATAGGCAGGATATGTTCACACTGGATGTATTTGAGGTGCCTCAAGGGTCTGGGTCAGGCTTCGTCTGGGATAAAAATGGAAATATTGTTACTAATTATCATGTGATTCGAGGTGCTTCTGATCTCAGGTGAGTTAATTGGCAACTGGAAACACATTTTTCTGATTTAAACAAGTTTCTATTTATTAGTATCTGCCTAAATGATTTCAGTTTCAAGTTCCTTGCCACAGTCCTCATATTATTTCTATATGCTATCTGACTGCTCTTATACTAGCATGATTCTACAACTTCGATTGTCTTAGCTAATCGTGGAGTATTAGGAAACCTGCAATTTTTTTCATGATATGAATTTGTTTGGATTGAACAGTCTGTTAGTTGCTTAATTATGGTTTTACGCTCTAATTGCTAGTACTAATATAGTCTTAGTCTTGCTCAGAGTGACTCTTGCTGATCAAACTACTTATGATGCAAAAGTTGTTGGATTTGACCAAGATAAAGATGTTGCTGTGTTGCATATTGATGCACCAAAAGACAAGTTGCGACCTATACCAATTGGCGTATCGGCAGACTTGCTCGTTGGTCAAAAAGTATTTGCTATTGGAAATCCAGTATGTGACGAAATACAAACCTGCTAGAGAATTCTGTTCATGTAATAATAGTACTTTTATCTGCTCTGTTGTCCCTTCTCTAAACCTAGTTTGAGCCATTCTATATTCAGCTTTCGCTTTAGAGGAAAACTATCGTCTTGCAGGCGTTCATGAGCATTACAACAATTAGAAAGTATTAATTTGCATATAGAATGCTAGTGCATTTTGTTATCAATAAAATTTGTGCAAGTAAGGAAAAAAACCAACTGACAGCGAGTAAGGAAAAAAAACAACTGATAGCAAGTACAACTTAGTTCAGTCTTCTGGTTCAACTGCTTGCTTGTAAGCGCACCTTCTTCTCCAGCTAAAGAATCAGTATCTGAAAGTTGGCTGTTACTTCTGAACATTCATCGCCTGCTAATATTTTTAACTGCTTCTTTTCCCATTAGTTTAAAGCATAACAATTCCCCCCCTGTAGTGCTCCAACTTCTGCCAAAATGTGTCACTGACTTGCACTTAAATCAAATTACTTTTTAAGGGCCCTAAAACAATTGTTGACTTACACATTGAAAATCTCTTGTTGCAATGAGTATATGTTTCTTGTGTTTAGGTACCCCACCACTTCACACCTCTTTTTCCTCTTTATTCATATAAATTTACTATAAAACATGAATATTTTACTTCTCTTTTATGTTTCATATGTTAAACACATGATGAATGATTTATAATGTAAATATCTTTGCAGTTTGGACTTGATCATACACTCACCACTGGTGTAATCAGGTATTTAGACATTTCATTTATGGTGTGCAGGTTCCTAATGTTCAGATATTCCAGTGAAATGGTGTTAACTATGTTTCTGTGAAGATAGGAGATGAAATAAATGAATCTAGCCACTCAAAGTCGTGGTAAAAATGACGTTAACTTCTTCCATTGTTTAAAACGGAGATGAAGTAGAGAATTTTGTTTAATCTTTTCCGTGTATTCAACTGTAAGACTAGCCTTGTGATGTTGACGTGGTTGTCACTGTTGAGTGCCTTGCACCCATAAATTCCAAGAAGCAAACATAAATACTAACCATATGTCATGGTAAATGGATACATATGCATAAGCAAGCTGTGTTGGATATGGATTAACTTAATGCTATGGATCATGCATATTCTTTAACATCACTGATCAATTTATATGTTTCTAGTGGGCTTAGGAGAGAAATCAATTCTGCG</genome_strand>
        <mrna_strand>CTTTGCTCTCACCAGTTGTCTTCTTAACAATGGCTGCATCTTCACACTCCCTAGCTTCTTCTGCTTGCTTCTCCACAACTCCGGCACGGAAATTTTCCGGCTCAGATCGATTTCAACTTGCTAAGTCTTTACTCTGCCGGAAAATACCTGGTTTCTCCGGCAGTGTGGTCTGCGCTCGGCGTATTTGCTCTAACTATGCCTCTTCCGGTGACCAGTCCAACTACGGGAAGAAGCTTATGGATAGTATTTTTGTGGCATGCACTTCCGTTGCCTTGTCTTTCTCTCTCTATATAGCAGACGTTGACCCTGCCTCGGCTTTTGTAGTCACTTCACCCAGGAAATTGCAGACTGATGAACTTGCTACTGTTCGTCTCTTCCAAGAGAATACACCTTCCGTTGTGTATATTACTAATCTTGCTTCCAG.......................................................................................................................................................................................GCAGGATATGTTCACACTGGATGTATTTGAGGTGCCTCAAGGGTCTGGGTCAGGCTTCGTCTGGGATAAAAATGGAAATATTGTTACTAATTATCATGTGATTCGAGGTGCTTCTGATCTCAG...................................................................................................................................................................................................................................................................................................................AGTGACTCTTGCTGATCAAACTACTTATGATGCAAAAGTTGTTGGATTTGACCAAGATAAAGATGTTGCTGTGTTGCATATTGATGCACCAAAAGACAAGTTGCGACCTATACCAATTGGCGTATCGGCAGACTTGCTCGTTGGTCAAAAAGTATTTGCTATTGGAAATCCA....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTTGGACTTGATCATACACTCACCACTGGTGTAATCAG............................................................................................................................................................................................................................................................................................................................................................................................................................TGGGCTTAGGAGAGAAATCAATTCTGCG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0236E02-u8qcS/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E284320" ref_strand="+" ref_description="SGN-E284320 [cLER-16-L12]">
      <seq>tttgctctcaccagttgtcttcttaacaatggctgcatcttcacactccctagcttcttctgcttgcttctccacaactccggcacggaaattttccggctcagatcgatttcaacttgctaagtctttactctgccggaaaatacctggtttctccggcagtgtggtctgcgctcggcgtatttgctctaactatgcctcttccggtgaccagtccaactacgggaagaagcttatggatagtatttttgtggcatgcacttccgatgccttgtctttctctctctatatagcagacgttgaccctgcctcggcttttgtagtcacttcacccaggaaattgcagactgatgaacttgctactgttcgtctcttccaagagaatacaccttccgttgtgtatattactaatcttgcttccaggcaggatatgttcacactggatgtatttgaggtgcctcaagggtctgggtcaggcttcgtctgggataaaaatggaaatattgttactaattatcatgtgattcgaggtgcttctgatctcagtcttgctcagagtgactcttgctgatcaaactacttatgatgcaaaagttgttggatttgac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0236E02-u8qcS/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0236E02.1" temp_strand="+" temp_description="C02HBa0236E02.1  AC215430.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0236E02 sequenced_by:kribb upload_account_name:korea">
        <position start="20182" stop="21869"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="20482" g_stop="20904" g_length="423"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="423" r_length="423" r_score="0.998"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="20905" i_stop="21087" i_length="183">
            <donor d_prob="0.964" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="21088" g_stop="21210" g_length="123"/>
          <reference_exon_boundary r_type="cDNA" r_start="424" r_stop="546" r_length="123" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="21211" i_stop="21507" i_length="297">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="21508" g_stop="21569" g_length="62"/>
          <reference_exon_boundary r_type="cDNA" r_start="547" r_stop="608" r_length="62" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0236E02.1" gen_strand="+" ref_id="SGN-E284320" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>608</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0236E02.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E284320" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="20482" e_stop="20904"/>
          <exon e_start="21088" e_stop="21210"/>
          <exon e_start="21508" e_stop="21569"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTGCTCTCACCAGTTGTCTTCTTAACAATGGCTGCATCTTCACACTCCCTAGCTTCTTCTGCTTGCTTCTCCACAACTCCGGCACGGAAATTTTCCGGCTCAGATCGATTTCAACTTGCTAAGTCTTTACTCTGCCGGAAAATACCTGGTTTCTCCGGCAGTGTGGTCTGCGCTCGGCGTATTTGCTCTAACTATGCCTCTTCCGGTGACCAGTCCAACTACGGGAAGAAGCTTATGGATAGTATTTTTGTGGCATGCACTTCCGTTGCCTTGTCTTTCTCTCTCTATATAGCAGACGTTGACCCTGCCTCGGCTTTTGTAGTCACTTCACCCAGGAAATTGCAGACTGATGAACTTGCTACTGTTCGTCTCTTCCAAGAGAATACACCTTCCGTTGTGTATATTACTAATCTTGCTTCCAGGTGATCTATCAATGAGGATGGTCCTTTTTTTTTTTTCCTTATATGTTAGTAATTCACGTGCATTTGAGTTTGTAGATATAGTGCTAGATGAAAGTCTGCTAGATGTATTTCCTGTTATTGTAATTGCCGTCCACCTTTGTTTTTCCGGTTTGGTTAATTTGGATTCCGTTTGTGATATAATAGGCAGGATATGTTCACACTGGATGTATTTGAGGTGCCTCAAGGGTCTGGGTCAGGCTTCGTCTGGGATAAAAATGGAAATATTGTTACTAATTATCATGTGATTCGAGGTGCTTCTGATCTCAGGTGAGTTAATTGGCAACTGGAAACACATTTTTCTGATTTAAACAAGTTTCTATTTATTAGTATCTGCCTAAATGATTTCAGTTTCAAGTTCCTTGCCACAGTCCTCATATTATTTCTATATGCTATCTGACTGCTCTTATACTAGCATGATTCTACAACTTCGATTGTCTTAGCTAATCGTGGAGTATTAGGAAACCTGCAATTTTTTTCATGATATGAATTTGTTTGGATTGAACAGTCTGTTAGTTGCTTAATTATGGTTTTACGCTCTAATTGCTAGTACTAATATAGTCTTAGTCTTGCTCAGAGTGACTCTTGCTGATCAAACTACTTATGATGCAAAAGTTGTTGGATTTGAC</genome_strand>
        <mrna_strand>TTTGCTCTCACCAGTTGTCTTCTTAACAATGGCTGCATCTTCACACTCCCTAGCTTCTTCTGCTTGCTTCTCCACAACTCCGGCACGGAAATTTTCCGGCTCAGATCGATTTCAACTTGCTAAGTCTTTACTCTGCCGGAAAATACCTGGTTTCTCCGGCAGTGTGGTCTGCGCTCGGCGTATTTGCTCTAACTATGCCTCTTCCGGTGACCAGTCCAACTACGGGAAGAAGCTTATGGATAGTATTTTTGTGGCATGCACTTCCGATGCCTTGTCTTTCTCTCTCTATATAGCAGACGTTGACCCTGCCTCGGCTTTTGTAGTCACTTCACCCAGGAAATTGCAGACTGATGAACTTGCTACTGTTCGTCTCTTCCAAGAGAATACACCTTCCGTTGTGTATATTACTAATCTTGCTTCCAG.......................................................................................................................................................................................GCAGGATATGTTCACACTGGATGTATTTGAGGTGCCTCAAGGGTCTGGGTCAGGCTTCGTCTGGGATAAAAATGGAAATATTGTTACTAATTATCATGTGATTCGAGGTGCTTCTGATCTCAG.........................................................................................................................................................................................................................................................................................................TCTTGCTCAGAGTGACTCTTGCTGATCAAACTACTTATGATGCAAAAGTTGTTGGATTTGAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0236E02-u8qcS/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E302347" ref_strand="+" ref_description="SGN-E302347 [cLEW-27-C20]">
      <seq>tttgctctcaccagttgtcttcttaacaatggctgcatcttcacactccctagcttcttctgcttgcttctccacaactccggcacggaaattttccggctcagatcgatttcaaccttgctaagtctttactctgccggaaaataccctggtttctccggcagtgtggtctgcgctcggcgtatttgctctaacctatgcctcttccggtgacccagtccaactacgggaagaagcttatggatagtatttttgtggcatgccaccttccgttgccttgtctttctctctctatatagcagacgttgacccctgcctcggcttttgtagtcacttcacccaggaaattgcagacctgatgaacttgctactgttcgtctcttccaagagaataccaccttccgttgtgtatattactaatcttgcttccaggcaggatatgttcacactggatgtatttgaggtgcctcaagggtctgggtcaggcttcgtctgggataaaaatggaaatattgttactaattatcatgtgattcgaggtgcttctgatctcagagtgactcttgctgatcaaactacttatgat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0236E02-u8qcS/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0236E02.1" temp_strand="+" temp_description="C02HBa0236E02.1  AC215430.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0236E02 sequenced_by:kribb upload_account_name:korea">
        <position start="20182" stop="21848"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="20482" g_stop="20904" g_length="423"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="432" r_length="432" r_score="0.957"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="20905" i_stop="21087" i_length="183">
            <donor d_prob="0.964" d_score="0.96"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="21088" g_stop="21210" g_length="123"/>
          <reference_exon_boundary r_type="cDNA" r_start="433" r_stop="555" r_length="123" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="21211" i_stop="21517" i_length="307">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.000" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="21518" g_stop="21548" g_length="31"/>
          <reference_exon_boundary r_type="cDNA" r_start="556" r_stop="586" r_length="31" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0236E02.1" gen_strand="+" ref_id="SGN-E302347" ref_strand="+">
        <total_alignment_score>0.967</total_alignment_score>
        <cumulative_length_of_scored_exons>577</cumulative_length_of_scored_exons>
        <coverage percentage="0.985" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0236E02.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E302347" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="20482" e_stop="20904"/>
          <exon e_start="21088" e_stop="21210"/>
          <exon e_start="21518" e_stop="21548"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTGCTCTCACCAGTTGTCTTCTTAACAATGGCTGCATCTTCACACTCCCTAGCTTCTTCTGCTTGCTTCTCCACAACTCCGGCACGGAAATTTTCCGGCTCAGATCGATTTCAA-CTTGCTAAGTCTTTACTCTGCCGGAAAATA-CCTGGTTTCTCCGGCAGTGTGGTCTGCGCTCGGCGTATTTGCTCTAA-CTATGCCTCTTCCGGTGA-CCAGTCCAACTACGGGAAGAAGCTTATGGATAGTATTTTTGTGGCATG-CA-CTTCCGTTGCCTTGTCTTTCTCTCTCTATATAGCAGACGTTGA-CCCTGCCTCGGCTTTTGTAGTCACTTCACCCAGGAAATTGCAGA-CTGATGAACTTGCTACTGTTCGTCTCTTCCAAGAGAATA-CACCTTCCGTTGTGTATATTACTAATCTTGCTTCCAGGTGATCTATCAATGAGGATGGTCCTTTTTTTTTTTTCCTTATATGTTAGTAATTCACGTGCATTTGAGTTTGTAGATATAGTGCTAGATGAAAGTCTGCTAGATGTATTTCCTGTTATTGTAATTGCCGTCCACCTTTGTTTTTCCGGTTTGGTTAATTTGGATTCCGTTTGTGATATAATAGGCAGGATATGTTCACACTGGATGTATTTGAGGTGCCTCAAGGGTCTGGGTCAGGCTTCGTCTGGGATAAAAATGGAAATATTGTTACTAATTATCATGTGATTCGAGGTGCTTCTGATCTCAGGTGAGTTAATTGGCAACTGGAAACACATTTTTCTGATTTAAACAAGTTTCTATTTATTAGTATCTGCCTAAATGATTTCAGTTTCAAGTTCCTTGCCACAGTCCTCATATTATTTCTATATGCTATCTGACTGCTCTTATACTAGCATGATTCTACAACTTCGATTGTCTTAGCTAATCGTGGAGTATTAGGAAACCTGCAATTTTTTTCATGATATGAATTTGTTTGGATTGAACAGTCTGTTAGTTGCTTAATTATGGTTTTACGCTCTAATTGCTAGTACTAATATAGTCTTAGTCTTGCTCAGAGTGACTCTTGCTGATCAAACTACTTATGAT</genome_strand>
        <mrna_strand>TTTGCTCTCACCAGTTGTCTTCTTAACAATGGCTGCATCTTCACACTCCCTAGCTTCTTCTGCTTGCTTCTCCACAACTCCGGCACGGAAATTTTCCGGCTCAGATCGATTTCAACCTTGCTAAGTCTTTACTCTGCCGGAAAATACCCTGGTTTCTCCGGCAGTGTGGTCTGCGCTCGGCGTATTTGCTCTAACCTATGCCTCTTCCGGTGACCCAGTCCAACTACGGGAAGAAGCTTATGGATAGTATTTTTGTGGCATGCCACCTTCCGTTGCCTTGTCTTTCTCTCTCTATATAGCAGACGTTGACCCCTGCCTCGGCTTTTGTAGTCACTTCACCCAGGAAATTGCAGACCTGATGAACTTGCTACTGTTCGTCTCTTCCAAGAGAATACCACCTTCCGTTGTGTATATTACTAATCTTGCTTCCAG.......................................................................................................................................................................................GCAGGATATGTTCACACTGGATGTATTTGAGGTGCCTCAAGGGTCTGGGTCAGGCTTCGTCTGGGATAAAAATGGAAATATTGTTACTAATTATCATGTGATTCGAGGTGCTTCTGATCTCAG...................................................................................................................................................................................................................................................................................................................AGTGACTCTTGCTGATCAAACTACTTATGAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0236E02-u8qcS/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E291953" ref_strand="+" ref_description="SGN-E291953 [cLET-7-E4]">
      <seq>ttgctctcaccagttgtcttcttaacaatggctgcatcttcacactccctagcttcttctgcttgcttctccacaactccggcacggaaattttccggctcagatcgatttcaacttgctaagtctttactctgccggaaaatacctggattctccggcagtgaggtctgcgctcggcgtatttgctctaactatgcctcttccggtgaccagtccaactacgggaagaagctcatggatagcatttttgtggcatgcacttccagtgccttgtctttctctctctatatagcagacgttgaccctgcctcggcttttgtagtcacttcacccaggaaattgcagactgatgaacttgctactgttcgtctcttccaagagaatacaccttccggtgtgcatattactaatcttgcttccaggcaggatatgttcacactggatgtatttgacgtgcctcaagggtctgggtcacgcttcgtctgggataaaaatggaaatattgttactaattatcatgtgattcgaggtgcttctgatctcagagtgactcttgctgatcaaactacttatgatg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0236E02-u8qcS/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0236E02.1" temp_strand="+" temp_description="C02HBa0236E02.1  AC215430.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0236E02 sequenced_by:kribb upload_account_name:korea">
        <position start="20183" stop="21849"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="20483" g_stop="20904" g_length="422"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="422" r_length="422" r_score="0.981"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="20905" i_stop="21087" i_length="183">
            <donor d_prob="0.964" d_score="0.96"/>
            <acceptor a_prob="0.997" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="21088" g_stop="21210" g_length="123"/>
          <reference_exon_boundary r_type="cDNA" r_start="423" r_stop="545" r_length="123" r_score="0.984"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="21211" i_stop="21517" i_length="307">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.000" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="21518" g_stop="21549" g_length="32"/>
          <reference_exon_boundary r_type="cDNA" r_start="546" r_stop="577" r_length="32" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0236E02.1" gen_strand="+" ref_id="SGN-E291953" ref_strand="+">
        <total_alignment_score>0.982</total_alignment_score>
        <cumulative_length_of_scored_exons>577</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0236E02.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E291953" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="20483" e_stop="20904"/>
          <exon e_start="21088" e_stop="21210"/>
          <exon e_start="21518" e_stop="21549"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTGCTCTCACCAGTTGTCTTCTTAACAATGGCTGCATCTTCACACTCCCTAGCTTCTTCTGCTTGCTTCTCCACAACTCCGGCACGGAAATTTTCCGGCTCAGATCGATTTCAACTTGCTAAGTCTTTACTCTGCCGGAAAATACCTGGTTTCTCCGGCAGTGTGGTCTGCGCTCGGCGTATTTGCTCTAACTATGCCTCTTCCGGTGACCAGTCCAACTACGGGAAGAAGCTTATGGATAGTATTTTTGTGGCATGCACTTCCGTTGCCTTGTCTTTCTCTCTCTATATAGCAGACGTTGACCCTGCCTCGGCTTTTGTAGTCACTTCACCCAGGAAATTGCAGACTGATGAACTTGCTACTGTTCGTCTCTTCCAAGAGAATACACCTTCCGTTGTGTATATTACTAATCTTGCTTCCAGGTGATCTATCAATGAGGATGGTCCTTTTTTTTTTTTCCTTATATGTTAGTAATTCACGTGCATTTGAGTTTGTAGATATAGTGCTAGATGAAAGTCTGCTAGATGTATTTCCTGTTATTGTAATTGCCGTCCACCTTTGTTTTTCCGGTTTGGTTAATTTGGATTCCGTTTGTGATATAATAGGCAGGATATGTTCACACTGGATGTATTTGAGGTGCCTCAAGGGTCTGGGTCAGGCTTCGTCTGGGATAAAAATGGAAATATTGTTACTAATTATCATGTGATTCGAGGTGCTTCTGATCTCAGGTGAGTTAATTGGCAACTGGAAACACATTTTTCTGATTTAAACAAGTTTCTATTTATTAGTATCTGCCTAAATGATTTCAGTTTCAAGTTCCTTGCCACAGTCCTCATATTATTTCTATATGCTATCTGACTGCTCTTATACTAGCATGATTCTACAACTTCGATTGTCTTAGCTAATCGTGGAGTATTAGGAAACCTGCAATTTTTTTCATGATATGAATTTGTTTGGATTGAACAGTCTGTTAGTTGCTTAATTATGGTTTTACGCTCTAATTGCTAGTACTAATATAGTCTTAGTCTTGCTCAGAGTGACTCTTGCTGATCAAACTACTTATGATG</genome_strand>
        <mrna_strand>TTGCTCTCACCAGTTGTCTTCTTAACAATGGCTGCATCTTCACACTCCCTAGCTTCTTCTGCTTGCTTCTCCACAACTCCGGCACGGAAATTTTCCGGCTCAGATCGATTTCAACTTGCTAAGTCTTTACTCTGCCGGAAAATACCTGGATTCTCCGGCAGTGAGGTCTGCGCTCGGCGTATTTGCTCTAACTATGCCTCTTCCGGTGACCAGTCCAACTACGGGAAGAAGCTCATGGATAGCATTTTTGTGGCATGCACTTCCAGTGCCTTGTCTTTCTCTCTCTATATAGCAGACGTTGACCCTGCCTCGGCTTTTGTAGTCACTTCACCCAGGAAATTGCAGACTGATGAACTTGCTACTGTTCGTCTCTTCCAAGAGAATACACCTTCCGGTGTGCATATTACTAATCTTGCTTCCAG.......................................................................................................................................................................................GCAGGATATGTTCACACTGGATGTATTTGACGTGCCTCAAGGGTCTGGGTCACGCTTCGTCTGGGATAAAAATGGAAATATTGTTACTAATTATCATGTGATTCGAGGTGCTTCTGATCTCAG...................................................................................................................................................................................................................................................................................................................AGTGACTCTTGCTGATCAAACTACTTATGATG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0236E02-u8qcS/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E621415" ref_strand="+" ref_description="SGN-E621415 [75161]">
      <seq>ctgctctgctctaaacaagtcagctctcggcagctgtcttcttaacaatggctgcatcttcacactccttagctttcttcagcttgcttctccacaactccgacacggaaaatttccggctcagatcgatttcaacttgctaagtctatactctgccggaaaatacctggtttcgccggcagtgtggtctgtgctcggcgtatgtgctctaattatgcctcttccgatgaccagtccaactacaggaagaagcttatggatagtatttttgtggcatgcacttccgttgccttgtctttttctctctatatagcagacgttgaccctgcctcggcttttgtagtcacttcacccaggaaattgcagactgatgaacttgctactgttcgcctcttccaggagaatacaccttccgttgtgtatattactaatcttgcttccaggcaggatatgtttacattggatgtatttgaggtgcctcaagggtctgggtcaggcttcgtctgggataaaaatggaaatattgttactaattatcatgtgattcgaggtgcctctgatctcagagtgactcttgctgatcaaactacttatgatgcaaaagttgttggatttgaccaagataacgatgttgctgtgttgcatatcgatgcaccaaaagacaagttgcgacctataccaattggagtatctgcagacttgctcgttaggtcaaaaagtattggctattggaaatccattttggacttgatcatacacttaccacttggtgttatcagtggccttaggagagaaatcattctgcagctacttgggcgccaat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0236E02-u8qcS/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0236E02.1" temp_strand="+" temp_description="C02HBa0236E02.1  AC215430.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0236E02 sequenced_by:kribb upload_account_name:korea">
        <position start="20185" stop="23208"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="20493" g_stop="20904" g_length="412"/>
          <reference_exon_boundary r_type="cDNA" r_start="31" r_stop="443" r_length="413" r_score="0.959"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="20905" i_stop="21087" i_length="183">
            <donor d_prob="0.964" d_score="0.98"/>
            <acceptor a_prob="0.997" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="21088" g_stop="21210" g_length="123"/>
          <reference_exon_boundary r_type="cDNA" r_start="444" r_stop="566" r_length="123" r_score="0.976"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="21211" i_stop="21517" i_length="307">
            <donor d_prob="0.997" d_score="0.98"/>
            <acceptor a_prob="0.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="21518" g_stop="21689" g_length="172"/>
          <reference_exon_boundary r_type="cDNA" r_start="567" r_stop="739" r_length="173" r_score="0.959"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="21690" i_stop="22413" i_length="724">
            <donor d_prob="0.928" d_score="0.92"/>
            <acceptor a_prob="0.991" a_score="0.84"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="22414" g_stop="22451" g_length="38"/>
          <reference_exon_boundary r_type="cDNA" r_start="740" r_stop="779" r_length="40" r_score="0.842"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="22452" i_stop="22863" i_length="412">
            <donor d_prob="0.968" d_score="0.84"/>
            <acceptor a_prob="0.886" a_score="0.82"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="22864" g_stop="22908" g_length="45"/>
          <reference_exon_boundary r_type="cDNA" r_start="780" r_stop="823" r_length="44" r_score="0.822"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0236E02.1" gen_strand="+" ref_id="SGN-E621415" ref_strand="+">
        <total_alignment_score>0.962</total_alignment_score>
        <cumulative_length_of_scored_exons>790</cumulative_length_of_scored_exons>
        <coverage percentage="0.960" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0236E02.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E621415" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="20493" e_stop="20904"/>
          <exon e_start="21088" e_stop="21210"/>
          <exon e_start="21518" e_stop="21689"/>
          <exon e_start="22414" e_stop="22451"/>
          <exon e_start="22864" e_stop="22908"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAGTTGTCTTCTTAACAATGGCTGCATCTTCACACTCCCTAGC-TTCTTCTGCTTGCTTCTCCACAACTCCGGCACGGAAATTTTCCGGCTCAGATCGATTTCAACTTGCTAAGTCTTTACTCTGCCGGAAAATACCTGGTTTCTCCGGCAGTGTGGTCTGCGCTCGGCGTATTTGCTCTAACTATGCCTCTTCCGGTGACCAGTCCAACTACGGGAAGAAGCTTATGGATAGTATTTTTGTGGCATGCACTTCCGTTGCCTTGTCTTTCTCTCTCTATATAGCAGACGTTGACCCTGCCTCGGCTTTTGTAGTCACTTCACCCAGGAAATTGCAGACTGATGAACTTGCTACTGTTCGTCTCTTCCAAGAGAATACACCTTCCGTTGTGTATATTACTAATCTTGCTTCCAGGTGATCTATCAATGAGGATGGTCCTTTTTTTTTTTTCCTTATATGTTAGTAATTCACGTGCATTTGAGTTTGTAGATATAGTGCTAGATGAAAGTCTGCTAGATGTATTTCCTGTTATTGTAATTGCCGTCCACCTTTGTTTTTCCGGTTTGGTTAATTTGGATTCCGTTTGTGATATAATAGGCAGGATATGTTCACACTGGATGTATTTGAGGTGCCTCAAGGGTCTGGGTCAGGCTTCGTCTGGGATAAAAATGGAAATATTGTTACTAATTATCATGTGATTCGAGGTGCTTCTGATCTCAGGTGAGTTAATTGGCAACTGGAAACACATTTTTCTGATTTAAACAAGTTTCTATTTATTAGTATCTGCCTAAATGATTTCAGTTTCAAGTTCCTTGCCACAGTCCTCATATTATTTCTATATGCTATCTGACTGCTCTTATACTAGCATGATTCTACAACTTCGATTGTCTTAGCTAATCGTGGAGTATTAGGAAACCTGCAATTTTTTTCATGATATGAATTTGTTTGGATTGAACAGTCTGTTAGTTGCTTAATTATGGTTTTACGCTCTAATTGCTAGTACTAATATAGTCTTAGTCTTGCTCAGAGTGACTCTTGCTGATCAAACTACTTATGATGCAAAAGTTGTTGGATTTGACCAAGATAAAGATGTTGCTGTGTTGCATATTGATGCACCAAAAGACAAGTTGCGACCTATACCAATTGGCGTATCGGCAGACTTGCTCGTT-GGTCAAAAAGTATTTGCTATTGGAAATCCAGTATGTGACGAAATACAAACCTGCTAGAGAATTCTGTTCATGTAATAATAGTACTTTTATCTGCTCTGTTGTCCCTTCTCTAAACCTAGTTTGAGCCATTCTATATTCAGCTTTCGCTTTAGAGGAAAACTATCGTCTTGCAGGCGTTCATGAGCATTACAACAATTAGAAAGTATTAATTTGCATATAGAATGCTAGTGCATTTTGTTATCAATAAAATTTGTGCAAGTAAGGAAAAAAACCAACTGACAGCGAGTAAGGAAAAAAAACAACTGATAGCAAGTACAACTTAGTTCAGTCTTCTGGTTCAACTGCTTGCTTGTAAGCGCACCTTCTTCTCCAGCTAAAGAATCAGTATCTGAAAGTTGGCTGTTACTTCTGAACATTCATCGCCTGCTAATATTTTTAACTGCTTCTTTTCCCATTAGTTTAAAGCATAACAATTCCCCCCCTGTAGTGCTCCAACTTCTGCCAAAATGTGTCACTGACTTGCACTTAAATCAAATTACTTTTTAAGGGCCCTAAAACAATTGTTGACTTACACATTGAAAATCTCTTGTTGCAATGAGTATATGTTTCTTGTGTTTAGGTACCCCACCACTTCACACCTCTTTTTCCTCTTTATTCATATAAATTTACTATAAAACATGAATATTTTACTTCTCTTTTATGTTTCATATGTTAAACACATGATGAATGATTTATAATGTAAATATCTTTGCAG-TTTGGACTTGATCATACACTCACCAC-TGGTGTAATCAGGTATTTAGACATTTCATTTATGGTGTGCAGGTTCCTAATGTTCAGATATTCCAGTGAAATGGTGTTAACTATGTTTCTGTGAAGATAGGAGATGAAATAAATGAATCTAGCCACTCAAAGTCGTGGTAAAAATGACGTTAACTTCTTCCATTGTTTAAAACGGAGATGAAGTAGAGAATTTTGTTTAATCTTTTCCGTGTATTCAACTGTAAGACTAGCCTTGTGATGTTGACGTGGTTGTCACTGTTGAGTGCCTTGCACCCATAAATTCCAAGAAGCAAACATAAATACTAACCATATGTCATGGTAAATGGATACATATGCATAAGCAAGCTGTGTTGGATATGGATTAACTTAATGCTATGGATCATGCATATTCTTTAACATCACTGATCAATTTATATGTTTCTAGTGGGCTTAGGAGAGAAATCAATTCTGCGGCTACTGGCCGCCCAAT</genome_strand>
        <mrna_strand>CAGCTGTCTTCTTAACAATGGCTGCATCTTCACACTCCTTAGCTTTCTTCAGCTTGCTTCTCCACAACTCCGACACGGAAAATTTCCGGCTCAGATCGATTTCAACTTGCTAAGTCTATACTCTGCCGGAAAATACCTGGTTTCGCCGGCAGTGTGGTCTGTGCTCGGCGTATGTGCTCTAATTATGCCTCTTCCGATGACCAGTCCAACTACAGGAAGAAGCTTATGGATAGTATTTTTGTGGCATGCACTTCCGTTGCCTTGTCTTTTTCTCTCTATATAGCAGACGTTGACCCTGCCTCGGCTTTTGTAGTCACTTCACCCAGGAAATTGCAGACTGATGAACTTGCTACTGTTCGCCTCTTCCAGGAGAATACACCTTCCGTTGTGTATATTACTAATCTTGCTTCCAG.......................................................................................................................................................................................GCAGGATATGTTTACATTGGATGTATTTGAGGTGCCTCAAGGGTCTGGGTCAGGCTTCGTCTGGGATAAAAATGGAAATATTGTTACTAATTATCATGTGATTCGAGGTGCCTCTGATCTCAG...................................................................................................................................................................................................................................................................................................................AGTGACTCTTGCTGATCAAACTACTTATGATGCAAAAGTTGTTGGATTTGACCAAGATAACGATGTTGCTGTGTTGCATATCGATGCACCAAAAGACAAGTTGCGACCTATACCAATTGGAGTATCTGCAGACTTGCTCGTTAGGTCAAAAAGTATTGGCTATTGGAAATCCA....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTTTGGACTTGATCATACACTTACCACTTGGTGTTATCAG............................................................................................................................................................................................................................................................................................................................................................................................................................TGGCCTTAGGAGAGAAATC-ATTCTGCAGCTACTTGGGCGCCAAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0236E02-u8qcS/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E418571" ref_strand="+" ref_description="SGN-E418571 [STM-27-H10]">
      <seq>ctgctctaaacaagtcagctctcggcagctgtcttcttaacaatggctgcatcttcacactccttagcttcttctgcttgcttctccacaactccgacgcggaaaatttccggctcagatcgatttcaacttgctaagtctatactctgccggaaaatacctggtttcgccggcagtgtggtctgtgctcggcgtatttgctctaactatgcctcttccgatgaccagtccaactacaggaagaatcttatggatagtatttttgtggcatgcacttccgttgccttgtctttttctctctatatagcagacgttgaccctgcctccgcttttgtagtcacttcacccaggaaattgcagactgatgaacttgctactgttcgcctcttccaggagaatacaccttccggtgtgtatattactaatcttgcttccaggcaggatatgtttacattggatgtatttgaggtgcctcaagggtctgggtcaggcttcgtctgggataaaaatggaaatattgttactaattatcatgtgattcgaggggcttctgatctcagagtgactctngctgatcaaactacttatgatgcaaaaagtgttggatttgaccaagataaagatgttgctgtattgcatatcgatgcaccaaaagacaagttgcgacctataccaattggcgtatctgcagacttgctcgttggtcaaaaagtatttgctattggaaatccatttggacttgatcata</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0236E02-u8qcS/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0236E02.1" temp_strand="+" temp_description="C02HBa0236E02.1  AC215430.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0236E02 sequenced_by:kribb upload_account_name:korea">
        <position start="20185" stop="22729"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="20493" g_stop="20904" g_length="412"/>
          <reference_exon_boundary r_type="cDNA" r_start="26" r_stop="437" r_length="412" r_score="0.961"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="20905" i_stop="21087" i_length="183">
            <donor d_prob="0.964" d_score="0.96"/>
            <acceptor a_prob="0.997" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="21088" g_stop="21210" g_length="123"/>
          <reference_exon_boundary r_type="cDNA" r_start="438" r_stop="560" r_length="123" r_score="0.976"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="21211" i_stop="21517" i_length="307">
            <donor d_prob="0.997" d_score="0.98"/>
            <acceptor a_prob="0.000" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="21518" g_stop="21689" g_length="172"/>
          <reference_exon_boundary r_type="cDNA" r_start="561" r_stop="732" r_length="172" r_score="0.965"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="21690" i_stop="22413" i_length="724">
            <donor d_prob="0.928" d_score="0.98"/>
            <acceptor a_prob="0.991" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="22414" g_stop="22429" g_length="16"/>
          <reference_exon_boundary r_type="cDNA" r_start="733" r_stop="748" r_length="16" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0236E02.1" gen_strand="+" ref_id="SGN-E418571" ref_strand="+">
        <total_alignment_score>0.965</total_alignment_score>
        <cumulative_length_of_scored_exons>723</cumulative_length_of_scored_exons>
        <coverage percentage="0.967" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0236E02.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E418571" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="20493" e_stop="20904"/>
          <exon e_start="21088" e_stop="21210"/>
          <exon e_start="21518" e_stop="21689"/>
          <exon e_start="22414" e_stop="22429"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAGTTGTCTTCTTAACAATGGCTGCATCTTCACACTCCCTAGCTTCTTCTGCTTGCTTCTCCACAACTCCGGCACGGAAATTTTCCGGCTCAGATCGATTTCAACTTGCTAAGTCTTTACTCTGCCGGAAAATACCTGGTTTCTCCGGCAGTGTGGTCTGCGCTCGGCGTATTTGCTCTAACTATGCCTCTTCCGGTGACCAGTCCAACTACGGGAAGAAGCTTATGGATAGTATTTTTGTGGCATGCACTTCCGTTGCCTTGTCTTTCTCTCTCTATATAGCAGACGTTGACCCTGCCTCGGCTTTTGTAGTCACTTCACCCAGGAAATTGCAGACTGATGAACTTGCTACTGTTCGTCTCTTCCAAGAGAATACACCTTCCGTTGTGTATATTACTAATCTTGCTTCCAGGTGATCTATCAATGAGGATGGTCCTTTTTTTTTTTTCCTTATATGTTAGTAATTCACGTGCATTTGAGTTTGTAGATATAGTGCTAGATGAAAGTCTGCTAGATGTATTTCCTGTTATTGTAATTGCCGTCCACCTTTGTTTTTCCGGTTTGGTTAATTTGGATTCCGTTTGTGATATAATAGGCAGGATATGTTCACACTGGATGTATTTGAGGTGCCTCAAGGGTCTGGGTCAGGCTTCGTCTGGGATAAAAATGGAAATATTGTTACTAATTATCATGTGATTCGAGGTGCTTCTGATCTCAGGTGAGTTAATTGGCAACTGGAAACACATTTTTCTGATTTAAACAAGTTTCTATTTATTAGTATCTGCCTAAATGATTTCAGTTTCAAGTTCCTTGCCACAGTCCTCATATTATTTCTATATGCTATCTGACTGCTCTTATACTAGCATGATTCTACAACTTCGATTGTCTTAGCTAATCGTGGAGTATTAGGAAACCTGCAATTTTTTTCATGATATGAATTTGTTTGGATTGAACAGTCTGTTAGTTGCTTAATTATGGTTTTACGCTCTAATTGCTAGTACTAATATAGTCTTAGTCTTGCTCAGAGTGACTCTTGCTGATCAAACTACTTATGATGCAAAAGTTGTTGGATTTGACCAAGATAAAGATGTTGCTGTGTTGCATATTGATGCACCAAAAGACAAGTTGCGACCTATACCAATTGGCGTATCGGCAGACTTGCTCGTTGGTCAAAAAGTATTTGCTATTGGAAATCCAGTATGTGACGAAATACAAACCTGCTAGAGAATTCTGTTCATGTAATAATAGTACTTTTATCTGCTCTGTTGTCCCTTCTCTAAACCTAGTTTGAGCCATTCTATATTCAGCTTTCGCTTTAGAGGAAAACTATCGTCTTGCAGGCGTTCATGAGCATTACAACAATTAGAAAGTATTAATTTGCATATAGAATGCTAGTGCATTTTGTTATCAATAAAATTTGTGCAAGTAAGGAAAAAAACCAACTGACAGCGAGTAAGGAAAAAAAACAACTGATAGCAAGTACAACTTAGTTCAGTCTTCTGGTTCAACTGCTTGCTTGTAAGCGCACCTTCTTCTCCAGCTAAAGAATCAGTATCTGAAAGTTGGCTGTTACTTCTGAACATTCATCGCCTGCTAATATTTTTAACTGCTTCTTTTCCCATTAGTTTAAAGCATAACAATTCCCCCCCTGTAGTGCTCCAACTTCTGCCAAAATGTGTCACTGACTTGCACTTAAATCAAATTACTTTTTAAGGGCCCTAAAACAATTGTTGACTTACACATTGAAAATCTCTTGTTGCAATGAGTATATGTTTCTTGTGTTTAGGTACCCCACCACTTCACACCTCTTTTTCCTCTTTATTCATATAAATTTACTATAAAACATGAATATTTTACTTCTCTTTTATGTTTCATATGTTAAACACATGATGAATGATTTATAATGTAAATATCTTTGCAGTTTGGACTTGATCATA</genome_strand>
        <mrna_strand>CAGCTGTCTTCTTAACAATGGCTGCATCTTCACACTCCTTAGCTTCTTCTGCTTGCTTCTCCACAACTCCGACGCGGAAAATTTCCGGCTCAGATCGATTTCAACTTGCTAAGTCTATACTCTGCCGGAAAATACCTGGTTTCGCCGGCAGTGTGGTCTGTGCTCGGCGTATTTGCTCTAACTATGCCTCTTCCGATGACCAGTCCAACTACAGGAAGAATCTTATGGATAGTATTTTTGTGGCATGCACTTCCGTTGCCTTGTCTTTTTCTCTCTATATAGCAGACGTTGACCCTGCCTCCGCTTTTGTAGTCACTTCACCCAGGAAATTGCAGACTGATGAACTTGCTACTGTTCGCCTCTTCCAGGAGAATACACCTTCCGGTGTGTATATTACTAATCTTGCTTCCAG.......................................................................................................................................................................................GCAGGATATGTTTACATTGGATGTATTTGAGGTGCCTCAAGGGTCTGGGTCAGGCTTCGTCTGGGATAAAAATGGAAATATTGTTACTAATTATCATGTGATTCGAGGGGCTTCTGATCTCAG...................................................................................................................................................................................................................................................................................................................AGTGACTCTNGCTGATCAAACTACTTATGATGCAAAAAGTGTTGGATTTGACCAAGATAAAGATGTTGCTGTATTGCATATCGATGCACCAAAAGACAAGTTGCGACCTATACCAATTGGCGTATCTGCAGACTTGCTCGTTGGTCAAAAAGTATTTGCTATTGGAAATCCA....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTTGGACTTGATCATA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0236E02-u8qcS/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E442314" ref_strand="+" ref_description="SGN-E442314 [cSTA-32-P17]">
      <seq>ctgctctaaacaagtcagctctcggcagctgtcttcttaacaatggctgcatcttcacactccttagcttcttctgcttgcttctccacaactccgacgcggaaaatttccggctcagatcgatttcaacttgctaagtctatactctgccggaaaatacctggtttcgccggcagtgtggtctgtgctcggcgtatttgctctaactatgcctcttccgatgaccagtccaactacaggaagaatcttatggatagtatttttgtggcatgcacttccgttgccttgtctttttctctctatatagcagacgttgaccctgcctccgcttttgtagtcacttcacccaggaaattgcagactgatgaacttgctactgttcgcctcttccaggagaatacaccttccgttgtgtatattactaatcttgcttccaggcaggatatgtttacatctgatgtatttg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0236E02-u8qcS/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0236E02.1" temp_strand="+" temp_description="C02HBa0236E02.1  AC215430.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0236E02 sequenced_by:kribb upload_account_name:korea">
        <position start="20185" stop="21205"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="20493" g_stop="20904" g_length="412"/>
          <reference_exon_boundary r_type="cDNA" r_start="26" r_stop="437" r_length="412" r_score="0.964"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="20905" i_stop="21087" i_length="183">
            <donor d_prob="0.964" d_score="0.98"/>
            <acceptor a_prob="0.997" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="21088" g_stop="21116" g_length="29"/>
          <reference_exon_boundary r_type="cDNA" r_start="438" r_stop="466" r_length="29" r_score="0.862"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0236E02.1" gen_strand="+" ref_id="SGN-E442314" ref_strand="+">
        <total_alignment_score>0.964</total_alignment_score>
        <cumulative_length_of_scored_exons>441</cumulative_length_of_scored_exons>
        <coverage percentage="0.946" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0236E02.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E442314" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="20493" e_stop="20904"/>
          <exon e_start="21088" e_stop="21116"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAGTTGTCTTCTTAACAATGGCTGCATCTTCACACTCCCTAGCTTCTTCTGCTTGCTTCTCCACAACTCCGGCACGGAAATTTTCCGGCTCAGATCGATTTCAACTTGCTAAGTCTTTACTCTGCCGGAAAATACCTGGTTTCTCCGGCAGTGTGGTCTGCGCTCGGCGTATTTGCTCTAACTATGCCTCTTCCGGTGACCAGTCCAACTACGGGAAGAAGCTTATGGATAGTATTTTTGTGGCATGCACTTCCGTTGCCTTGTCTTTCTCTCTCTATATAGCAGACGTTGACCCTGCCTCGGCTTTTGTAGTCACTTCACCCAGGAAATTGCAGACTGATGAACTTGCTACTGTTCGTCTCTTCCAAGAGAATACACCTTCCGTTGTGTATATTACTAATCTTGCTTCCAGGTGATCTATCAATGAGGATGGTCCTTTTTTTTTTTTCCTTATATGTTAGTAATTCACGTGCATTTGAGTTTGTAGATATAGTGCTAGATGAAAGTCTGCTAGATGTATTTCCTGTTATTGTAATTGCCGTCCACCTTTGTTTTTCCGGTTTGGTTAATTTGGATTCCGTTTGTGATATAATAGGCAGGATATGTTCACACTGGATGTATTTG</genome_strand>
        <mrna_strand>CAGCTGTCTTCTTAACAATGGCTGCATCTTCACACTCCTTAGCTTCTTCTGCTTGCTTCTCCACAACTCCGACGCGGAAAATTTCCGGCTCAGATCGATTTCAACTTGCTAAGTCTATACTCTGCCGGAAAATACCTGGTTTCGCCGGCAGTGTGGTCTGTGCTCGGCGTATTTGCTCTAACTATGCCTCTTCCGATGACCAGTCCAACTACAGGAAGAATCTTATGGATAGTATTTTTGTGGCATGCACTTCCGTTGCCTTGTCTTTTTCTCTCTATATAGCAGACGTTGACCCTGCCTCCGCTTTTGTAGTCACTTCACCCAGGAAATTGCAGACTGATGAACTTGCTACTGTTCGCCTCTTCCAGGAGAATACACCTTCCGTTGTGTATATTACTAATCTTGCTTCCAG.......................................................................................................................................................................................GCAGGATATGTTTACATCTGATGTATTTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0236E02-u8qcS/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E439642" ref_strand="+" ref_description="SGN-E439642 [cSTA-12-P12]">
      <seq>gaggggtttatggacagctgtcttcttaacaatggctgcatcttcacactccttagcttcttctgcttgcttctccacaactccgacacggaaaatgtccggctcagatcgatttcaacttgctaagtctatactctgccggaaaatacctggtttcgccggcagtgtggtctgtgctcggcgtatttgctctaactatgcatcttccgatgaccagtccaactacaggaagaatcttatggatagtatttttgtggcatgcac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0236E02-u8qcS/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0236E02.1" temp_strand="+" temp_description="C02HBa0236E02.1  AC215430.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0236E02 sequenced_by:kribb upload_account_name:korea">
        <position start="20193" stop="21042"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="20493" g_stop="20742" g_length="250"/>
          <reference_exon_boundary r_type="cDNA" r_start="15" r_stop="264" r_length="250" r_score="0.952"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0236E02.1" gen_strand="+" ref_id="SGN-E439642" ref_strand="+">
        <total_alignment_score>0.952</total_alignment_score>
        <cumulative_length_of_scored_exons>250</cumulative_length_of_scored_exons>
        <coverage percentage="0.947" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0236E02.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E439642" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="20493" e_stop="20742"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAGTTGTCTTCTTAACAATGGCTGCATCTTCACACTCCCTAGCTTCTTCTGCTTGCTTCTCCACAACTCCGGCACGGAAATTTTCCGGCTCAGATCGATTTCAACTTGCTAAGTCTTTACTCTGCCGGAAAATACCTGGTTTCTCCGGCAGTGTGGTCTGCGCTCGGCGTATTTGCTCTAACTATGCCTCTTCCGGTGACCAGTCCAACTACGGGAAGAAGCTTATGGATAGTATTTTTGTGGCATGCAC</genome_strand>
        <mrna_strand>CAGCTGTCTTCTTAACAATGGCTGCATCTTCACACTCCTTAGCTTCTTCTGCTTGCTTCTCCACAACTCCGACACGGAAAATGTCCGGCTCAGATCGATTTCAACTTGCTAAGTCTATACTCTGCCGGAAAATACCTGGTTTCGCCGGCAGTGTGGTCTGTGCTCGGCGTATTTGCTCTAACTATGCATCTTCCGATGACCAGTCCAACTACAGGAAGAATCTTATGGATAGTATTTTTGTGGCATGCAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0236E02-u8qcS/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E725724" ref_strand="+" ref_description="SGN-E725724 [LA05CA01]">
      <seq>gttgtcttcttaacaatggctgcatcttcacactccctagcttcttctgcttgcttctccacaactccggcacggaaattttccggctcagatcgatttcaacttgctaagtctttactctgccggaaaatacctggtttctccggcagtgtggtctgcgctcggcgtatttgctctaactatgcctcttccggtgaccagtccaactacgggaagaagcttatggatagtatttttgtggcatgcacttccgttgccttgtctttctctctctatatagcagacgttgaccctgcctcggcttttgtagtcacttcacccaggaaattgcagactgatgaacttgctactgttcgtctcttccaagagaatacaccttccgttgtgtatattactaatcttgcttccaggcaggatatgttcacactggatgtatttgaggtgcctcaagggtctgggtcaggcctcgtctgggataaaaatggaaatattgttactaattatcatgtg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0236E02-u8qcS/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0236E02.1" temp_strand="+" temp_description="C02HBa0236E02.1  AC215430.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0236E02 sequenced_by:kribb upload_account_name:korea">
        <position start="20195" stop="21487"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="20495" g_stop="20904" g_length="410"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="410" r_length="410" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="20905" i_stop="21087" i_length="183">
            <donor d_prob="0.964" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="21088" g_stop="21187" g_length="100"/>
          <reference_exon_boundary r_type="cDNA" r_start="411" r_stop="510" r_length="100" r_score="0.990"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0236E02.1" gen_strand="+" ref_id="SGN-E725724" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>510</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0236E02.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E725724" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="20495" e_stop="20904"/>
          <exon e_start="21088" e_stop="21187"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTTGTCTTCTTAACAATGGCTGCATCTTCACACTCCCTAGCTTCTTCTGCTTGCTTCTCCACAACTCCGGCACGGAAATTTTCCGGCTCAGATCGATTTCAACTTGCTAAGTCTTTACTCTGCCGGAAAATACCTGGTTTCTCCGGCAGTGTGGTCTGCGCTCGGCGTATTTGCTCTAACTATGCCTCTTCCGGTGACCAGTCCAACTACGGGAAGAAGCTTATGGATAGTATTTTTGTGGCATGCACTTCCGTTGCCTTGTCTTTCTCTCTCTATATAGCAGACGTTGACCCTGCCTCGGCTTTTGTAGTCACTTCACCCAGGAAATTGCAGACTGATGAACTTGCTACTGTTCGTCTCTTCCAAGAGAATACACCTTCCGTTGTGTATATTACTAATCTTGCTTCCAGGTGATCTATCAATGAGGATGGTCCTTTTTTTTTTTTCCTTATATGTTAGTAATTCACGTGCATTTGAGTTTGTAGATATAGTGCTAGATGAAAGTCTGCTAGATGTATTTCCTGTTATTGTAATTGCCGTCCACCTTTGTTTTTCCGGTTTGGTTAATTTGGATTCCGTTTGTGATATAATAGGCAGGATATGTTCACACTGGATGTATTTGAGGTGCCTCAAGGGTCTGGGTCAGGCTTCGTCTGGGATAAAAATGGAAATATTGTTACTAATTATCATGTG</genome_strand>
        <mrna_strand>GTTGTCTTCTTAACAATGGCTGCATCTTCACACTCCCTAGCTTCTTCTGCTTGCTTCTCCACAACTCCGGCACGGAAATTTTCCGGCTCAGATCGATTTCAACTTGCTAAGTCTTTACTCTGCCGGAAAATACCTGGTTTCTCCGGCAGTGTGGTCTGCGCTCGGCGTATTTGCTCTAACTATGCCTCTTCCGGTGACCAGTCCAACTACGGGAAGAAGCTTATGGATAGTATTTTTGTGGCATGCACTTCCGTTGCCTTGTCTTTCTCTCTCTATATAGCAGACGTTGACCCTGCCTCGGCTTTTGTAGTCACTTCACCCAGGAAATTGCAGACTGATGAACTTGCTACTGTTCGTCTCTTCCAAGAGAATACACCTTCCGTTGTGTATATTACTAATCTTGCTTCCAG.......................................................................................................................................................................................GCAGGATATGTTCACACTGGATGTATTTGAGGTGCCTCAAGGGTCTGGGTCAGGCCTCGTCTGGGATAAAAATGGAAATATTGTTACTAATTATCATGTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0236E02-u8qcS/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E249718" ref_strand="+" ref_description="SGN-E249718 [cLEF-56-N10]">
      <seq>cttcttaacaatggctgcatcttcacactccctagcttctgctgcttgcttctccacaactccggcacggaaattttccggctcagatcgatttcaacttgctaagtctttactctgccggaaaatacctggtttctccggcagtgtggtctgcgctcggcgtatttgctctaactatgcctcttccggtgaccagtccaactacgggaagaagcttatggatagtatttttgtggcatgcacttccgttgccttgtctttctctctctatatagcagacgttgaccctgcctcggcttttgtagtcacttcacccaggaaattgcagactgatgaacttgctactgttcgtctcttccaagagaatacaccttccgttgtgtatattactaatcttgcttccaggcaggatatgttcacactggatgtatttgaggtgcctcaagggtctgggtcaagcttcgtctgggataaaaatggaaatattgttactaattatcatgtgattcgaggtgcttctgatctcagagtgactcttgctgatcaaactacttatgatgcaaaagttgttggatttgaccaagataaagatgttgctgtgttgcatattgatgcaccaaaagacaagttgcgacctataccaattggcgtatcggcag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0236E02-u8qcS/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0236E02.1" temp_strand="+" temp_description="C02HBa0236E02.1  AC215430.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0236E02 sequenced_by:kribb upload_account_name:korea">
        <position start="20200" stop="21948"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="20500" g_stop="20904" g_length="405"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="405" r_length="405" r_score="0.998"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="20905" i_stop="21087" i_length="183">
            <donor d_prob="0.964" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="21088" g_stop="21210" g_length="123"/>
          <reference_exon_boundary r_type="cDNA" r_start="406" r_stop="528" r_length="123" r_score="0.992"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="21211" i_stop="21517" i_length="307">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="21518" g_stop="21648" g_length="131"/>
          <reference_exon_boundary r_type="cDNA" r_start="529" r_stop="659" r_length="131" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0236E02.1" gen_strand="+" ref_id="SGN-E249718" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>659</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0236E02.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E249718" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="20500" e_stop="20904"/>
          <exon e_start="21088" e_stop="21210"/>
          <exon e_start="21518" e_stop="21648"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTTCTTAACAATGGCTGCATCTTCACACTCCCTAGCTTCTTCTGCTTGCTTCTCCACAACTCCGGCACGGAAATTTTCCGGCTCAGATCGATTTCAACTTGCTAAGTCTTTACTCTGCCGGAAAATACCTGGTTTCTCCGGCAGTGTGGTCTGCGCTCGGCGTATTTGCTCTAACTATGCCTCTTCCGGTGACCAGTCCAACTACGGGAAGAAGCTTATGGATAGTATTTTTGTGGCATGCACTTCCGTTGCCTTGTCTTTCTCTCTCTATATAGCAGACGTTGACCCTGCCTCGGCTTTTGTAGTCACTTCACCCAGGAAATTGCAGACTGATGAACTTGCTACTGTTCGTCTCTTCCAAGAGAATACACCTTCCGTTGTGTATATTACTAATCTTGCTTCCAGGTGATCTATCAATGAGGATGGTCCTTTTTTTTTTTTCCTTATATGTTAGTAATTCACGTGCATTTGAGTTTGTAGATATAGTGCTAGATGAAAGTCTGCTAGATGTATTTCCTGTTATTGTAATTGCCGTCCACCTTTGTTTTTCCGGTTTGGTTAATTTGGATTCCGTTTGTGATATAATAGGCAGGATATGTTCACACTGGATGTATTTGAGGTGCCTCAAGGGTCTGGGTCAGGCTTCGTCTGGGATAAAAATGGAAATATTGTTACTAATTATCATGTGATTCGAGGTGCTTCTGATCTCAGGTGAGTTAATTGGCAACTGGAAACACATTTTTCTGATTTAAACAAGTTTCTATTTATTAGTATCTGCCTAAATGATTTCAGTTTCAAGTTCCTTGCCACAGTCCTCATATTATTTCTATATGCTATCTGACTGCTCTTATACTAGCATGATTCTACAACTTCGATTGTCTTAGCTAATCGTGGAGTATTAGGAAACCTGCAATTTTTTTCATGATATGAATTTGTTTGGATTGAACAGTCTGTTAGTTGCTTAATTATGGTTTTACGCTCTAATTGCTAGTACTAATATAGTCTTAGTCTTGCTCAGAGTGACTCTTGCTGATCAAACTACTTATGATGCAAAAGTTGTTGGATTTGACCAAGATAAAGATGTTGCTGTGTTGCATATTGATGCACCAAAAGACAAGTTGCGACCTATACCAATTGGCGTATCGGCAG</genome_strand>
        <mrna_strand>CTTCTTAACAATGGCTGCATCTTCACACTCCCTAGCTTCTGCTGCTTGCTTCTCCACAACTCCGGCACGGAAATTTTCCGGCTCAGATCGATTTCAACTTGCTAAGTCTTTACTCTGCCGGAAAATACCTGGTTTCTCCGGCAGTGTGGTCTGCGCTCGGCGTATTTGCTCTAACTATGCCTCTTCCGGTGACCAGTCCAACTACGGGAAGAAGCTTATGGATAGTATTTTTGTGGCATGCACTTCCGTTGCCTTGTCTTTCTCTCTCTATATAGCAGACGTTGACCCTGCCTCGGCTTTTGTAGTCACTTCACCCAGGAAATTGCAGACTGATGAACTTGCTACTGTTCGTCTCTTCCAAGAGAATACACCTTCCGTTGTGTATATTACTAATCTTGCTTCCAG.......................................................................................................................................................................................GCAGGATATGTTCACACTGGATGTATTTGAGGTGCCTCAAGGGTCTGGGTCAAGCTTCGTCTGGGATAAAAATGGAAATATTGTTACTAATTATCATGTGATTCGAGGTGCTTCTGATCTCAG...................................................................................................................................................................................................................................................................................................................AGTGACTCTTGCTGATCAAACTACTTATGATGCAAAAGTTGTTGGATTTGACCAAGATAAAGATGTTGCTGTGTTGCATATTGATGCACCAAAAGACAAGTTGCGACCTATACCAATTGGCGTATCGGCAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0236E02-u8qcS/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E621090" ref_strand="+" ref_description="SGN-E621090 [71797]">
      <seq>gcttctccacaactccgacacggaaaattccggctcagatcgatttcaacttgctaagtctatactctgccggaaaatacctggtttcgccggcagtgtggtctgtgctcggcgtatgtgctctaattatgcctcttccgatgaccagtccaactacaggaagaagcttatggatagtatttttgtggcatgcacttccgttgccttgtctttttctctctatatagcagacgttgaccctgcctcggcttttgtagtcacttcacccaggaaattgcagactgatgaacttgctactgttcgcctcttccaggagaatacaccttccgttgtgtatattactaatcttgcttccaggcaggatatgtttacattggatgtatttgaggtgcctcaagggtctgggtcaggcttcgtctgggataaaaatggaaatattgttactaattatcatgtgattcgaggtgcctctgatctcagagtgactcttgctgaatcaaaatacttatgat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0236E02-u8qcS/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0236E02.1" temp_strand="+" temp_description="C02HBa0236E02.1  AC215430.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0236E02 sequenced_by:kribb upload_account_name:korea">
        <position start="20247" stop="21848"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="20547" g_stop="20904" g_length="358"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="357" r_length="357" r_score="0.964"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="20905" i_stop="21087" i_length="183">
            <donor d_prob="0.964" d_score="0.98"/>
            <acceptor a_prob="0.997" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="21088" g_stop="21210" g_length="123"/>
          <reference_exon_boundary r_type="cDNA" r_start="358" r_stop="480" r_length="123" r_score="0.976"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="21211" i_stop="21517" i_length="307">
            <donor d_prob="0.997" d_score="0.98"/>
            <acceptor a_prob="0.000" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="21518" g_stop="21548" g_length="31"/>
          <reference_exon_boundary r_type="cDNA" r_start="481" r_stop="512" r_length="32" r_score="0.903"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0236E02.1" gen_strand="+" ref_id="SGN-E621090" ref_strand="+">
        <total_alignment_score>0.967</total_alignment_score>
        <cumulative_length_of_scored_exons>512</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0236E02.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E621090" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="20547" e_stop="20904"/>
          <exon e_start="21088" e_stop="21210"/>
          <exon e_start="21518" e_stop="21548"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCTTCTCCACAACTCCGGCACGGAAATTTTCCGGCTCAGATCGATTTCAACTTGCTAAGTCTTTACTCTGCCGGAAAATACCTGGTTTCTCCGGCAGTGTGGTCTGCGCTCGGCGTATTTGCTCTAACTATGCCTCTTCCGGTGACCAGTCCAACTACGGGAAGAAGCTTATGGATAGTATTTTTGTGGCATGCACTTCCGTTGCCTTGTCTTTCTCTCTCTATATAGCAGACGTTGACCCTGCCTCGGCTTTTGTAGTCACTTCACCCAGGAAATTGCAGACTGATGAACTTGCTACTGTTCGTCTCTTCCAAGAGAATACACCTTCCGTTGTGTATATTACTAATCTTGCTTCCAGGTGATCTATCAATGAGGATGGTCCTTTTTTTTTTTTCCTTATATGTTAGTAATTCACGTGCATTTGAGTTTGTAGATATAGTGCTAGATGAAAGTCTGCTAGATGTATTTCCTGTTATTGTAATTGCCGTCCACCTTTGTTTTTCCGGTTTGGTTAATTTGGATTCCGTTTGTGATATAATAGGCAGGATATGTTCACACTGGATGTATTTGAGGTGCCTCAAGGGTCTGGGTCAGGCTTCGTCTGGGATAAAAATGGAAATATTGTTACTAATTATCATGTGATTCGAGGTGCTTCTGATCTCAGGTGAGTTAATTGGCAACTGGAAACACATTTTTCTGATTTAAACAAGTTTCTATTTATTAGTATCTGCCTAAATGATTTCAGTTTCAAGTTCCTTGCCACAGTCCTCATATTATTTCTATATGCTATCTGACTGCTCTTATACTAGCATGATTCTACAACTTCGATTGTCTTAGCTAATCGTGGAGTATTAGGAAACCTGCAATTTTTTTCATGATATGAATTTGTTTGGATTGAACAGTCTGTTAGTTGCTTAATTATGGTTTTACGCTCTAATTGCTAGTACTAATATAGTCTTAGTCTTGCTCAGAGTGACTCTTGCTG-ATCAAACTACTTATGAT</genome_strand>
        <mrna_strand>GCTTCTCCACAACTCCGACACGGAAA-ATTCCGGCTCAGATCGATTTCAACTTGCTAAGTCTATACTCTGCCGGAAAATACCTGGTTTCGCCGGCAGTGTGGTCTGTGCTCGGCGTATGTGCTCTAATTATGCCTCTTCCGATGACCAGTCCAACTACAGGAAGAAGCTTATGGATAGTATTTTTGTGGCATGCACTTCCGTTGCCTTGTCTTTTTCTCTCTATATAGCAGACGTTGACCCTGCCTCGGCTTTTGTAGTCACTTCACCCAGGAAATTGCAGACTGATGAACTTGCTACTGTTCGCCTCTTCCAGGAGAATACACCTTCCGTTGTGTATATTACTAATCTTGCTTCCAG.......................................................................................................................................................................................GCAGGATATGTTTACATTGGATGTATTTGAGGTGCCTCAAGGGTCTGGGTCAGGCTTCGTCTGGGATAAAAATGGAAATATTGTTACTAATTATCATGTGATTCGAGGTGCCTCTGATCTCAG...................................................................................................................................................................................................................................................................................................................AGTGACTCTTGCTGAATCAAAATACTTATGAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0236E02-u8qcS/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E406320" ref_strand="+" ref_description="SGN-E406320 [PPI-3-M18]">
      <seq>tttcaacttgctaagtccacactctgccggaaaacacctggtttcgccggcagtgtggtctgtgctcggcgtatttgctctaacctatgcatcttccgatgacccagtccaacctaccaggaagaatcttatggatagtatttttgtggcatgcaccttccgttgccttgtctttttctctcttatatagcagacgttgaccctgcctcggcttttgtagtcacttcacccaggaaattgcagaactgatgaacttgctactgttcgcctcttccaggagaatacaccttccgttgtgtatattactaatcttgcttccaggcaggatatgtttacattggatgtatttgaggtgcctcaagggtctgggtcaggcttcgtctgggataaaaatggaaatattgttactaattatcatgtgattcgaggtgcctctgatctcagagtgactcttgctgatcaaactacttatgatgcaaaagttgttggnatttgaccaagataaagatgtttgctgtattgcatatcgatgcaccaaaagacaaagtgcgacctataccaattggcgtatctg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0236E02-u8qcS/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0236E02.1" temp_strand="+" temp_description="C02HBa0236E02.1  AC215430.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0236E02 sequenced_by:kribb upload_account_name:korea">
        <position start="20311" stop="21945"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="20591" g_stop="20904" g_length="314"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="321" r_length="321" r_score="0.914"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="20905" i_stop="21087" i_length="183">
            <donor d_prob="0.964" d_score="0.98"/>
            <acceptor a_prob="0.997" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="21088" g_stop="21210" g_length="123"/>
          <reference_exon_boundary r_type="cDNA" r_start="322" r_stop="444" r_length="123" r_score="0.976"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="21211" i_stop="21517" i_length="307">
            <donor d_prob="0.997" d_score="0.98"/>
            <acceptor a_prob="0.000" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="21518" g_stop="21645" g_length="128"/>
          <reference_exon_boundary r_type="cDNA" r_start="445" r_stop="574" r_length="130" r_score="0.930"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0236E02.1" gen_strand="+" ref_id="SGN-E406320" ref_strand="+">
        <total_alignment_score>0.931</total_alignment_score>
        <cumulative_length_of_scored_exons>565</cumulative_length_of_scored_exons>
        <coverage percentage="0.984" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0236E02.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E406320" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="20591" e_stop="20904"/>
          <exon e_start="21088" e_stop="21210"/>
          <exon e_start="21518" e_stop="21645"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTCAACTTGCTAAGTCTTTACTCTGCCGGAAAATACCTGGTTTCTCCGGCAGTGTGGTCTGCGCTCGGCGTATTTGCTCTAAC-TATGCCTCTTCCGGTGA-CCAGTCCAA-CTA-CGGGAAGAAGCTTATGGATAGTATTTTTGTGGCATGCA-CTTCCGTTGCCTTGTCTTTCTCTCTC-TATATAGCAGACGTTGACCCTGCCTCGGCTTTTGTAGTCACTTCACCCAGGAAATTGCAG-ACTGATGAACTTGCTACTGTTCGTCTCTTCCAAGAGAATACACCTTCCGTTGTGTATATTACTAATCTTGCTTCCAGGTGATCTATCAATGAGGATGGTCCTTTTTTTTTTTTCCTTATATGTTAGTAATTCACGTGCATTTGAGTTTGTAGATATAGTGCTAGATGAAAGTCTGCTAGATGTATTTCCTGTTATTGTAATTGCCGTCCACCTTTGTTTTTCCGGTTTGGTTAATTTGGATTCCGTTTGTGATATAATAGGCAGGATATGTTCACACTGGATGTATTTGAGGTGCCTCAAGGGTCTGGGTCAGGCTTCGTCTGGGATAAAAATGGAAATATTGTTACTAATTATCATGTGATTCGAGGTGCTTCTGATCTCAGGTGAGTTAATTGGCAACTGGAAACACATTTTTCTGATTTAAACAAGTTTCTATTTATTAGTATCTGCCTAAATGATTTCAGTTTCAAGTTCCTTGCCACAGTCCTCATATTATTTCTATATGCTATCTGACTGCTCTTATACTAGCATGATTCTACAACTTCGATTGTCTTAGCTAATCGTGGAGTATTAGGAAACCTGCAATTTTTTTCATGATATGAATTTGTTTGGATTGAACAGTCTGTTAGTTGCTTAATTATGGTTTTACGCTCTAATTGCTAGTACTAATATAGTCTTAGTCTTGCTCAGAGTGACTCTTGCTGATCAAACTACTTATGATGCAAAAGTTGTTGG-ATTTGACCAAGATAAAGATG-TTGCTGTGTTGCATATTGATGCACCAAAAGACAAGTTGCGACCTATACCAATTGGCGTATCGG</genome_strand>
        <mrna_strand>TTTCAACTTGCTAAGTCCACACTCTGCCGGAAAACACCTGGTTTCGCCGGCAGTGTGGTCTGTGCTCGGCGTATTTGCTCTAACCTATGCATCTTCCGATGACCCAGTCCAACCTACCAGGAAGAATCTTATGGATAGTATTTTTGTGGCATGCACCTTCCGTTGCCTTGTCTTTTTCTCTCTTATATAGCAGACGTTGACCCTGCCTCGGCTTTTGTAGTCACTTCACCCAGGAAATTGCAGAACTGATGAACTTGCTACTGTTCGCCTCTTCCAGGAGAATACACCTTCCGTTGTGTATATTACTAATCTTGCTTCCAG.......................................................................................................................................................................................GCAGGATATGTTTACATTGGATGTATTTGAGGTGCCTCAAGGGTCTGGGTCAGGCTTCGTCTGGGATAAAAATGGAAATATTGTTACTAATTATCATGTGATTCGAGGTGCCTCTGATCTCAG...................................................................................................................................................................................................................................................................................................................AGTGACTCTTGCTGATCAAACTACTTATGATGCAAAAGTTGTTGGNATTTGACCAAGATAAAGATGTTTGCTGTATTGCATATCGATGCACCAAAAGACAAAGTGCGACCTATACCAATTGGCGTATCTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0236E02-u8qcS/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E274855" ref_strand="+" ref_description="SGN-E274855 [cLEN-13-J20]">
      <seq>tctgcgctcggcgtatttgctctaactatgcctcttccggtgaccagtccaactacgggaagaagcttatggatagtatttttgtggcatgcacttccgttgccttgtctttctctctctatatagcagacgttgaccctgcctcggcttttgtagtcacttcacccaggaaattgcagactgatgaacttgctactgttcgtctcttccaagagaatacaccttccgttgtgtatattactaatcttgcttccaggcaggatatgttcacactggatgtatttgaggtgcctcaagggtctgggtcaggcttcgtctgggataaaaatggaaatattgttactaattatcatgtgattcgaggtgcttctgatctcagagtgactcttgctgatcaaactacttatgatgcaaaagttgttggatttgaccaagataaagatgttgctgtgttgcatattgatgcaccaaaagacaagttgcgacctataccaattggcgtatcggcagacttgctcgttggtcaaaaagtatttgctattggaaatccatttggacttgatcatacactcaccact</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0236E02-u8qcS/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0236E02.1" temp_strand="+" temp_description="C02HBa0236E02.1  AC215430.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0236E02 sequenced_by:kribb upload_account_name:korea">
        <position start="20349" stop="22740"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="20649" g_stop="20904" g_length="256"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="256" r_length="256" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="20905" i_stop="21087" i_length="183">
            <donor d_prob="0.964" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="21088" g_stop="21210" g_length="123"/>
          <reference_exon_boundary r_type="cDNA" r_start="257" r_stop="379" r_length="123" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="21211" i_stop="21517" i_length="307">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="21518" g_stop="21689" g_length="172"/>
          <reference_exon_boundary r_type="cDNA" r_start="380" r_stop="551" r_length="172" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="21690" i_stop="22413" i_length="724">
            <donor d_prob="0.928" d_score="1.00"/>
            <acceptor a_prob="0.991" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="22414" g_stop="22440" g_length="27"/>
          <reference_exon_boundary r_type="cDNA" r_start="552" r_stop="578" r_length="27" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0236E02.1" gen_strand="+" ref_id="SGN-E274855" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>578</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0236E02.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E274855" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="20649" e_stop="20904"/>
          <exon e_start="21088" e_stop="21210"/>
          <exon e_start="21518" e_stop="21689"/>
          <exon e_start="22414" e_stop="22440"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCTGCGCTCGGCGTATTTGCTCTAACTATGCCTCTTCCGGTGACCAGTCCAACTACGGGAAGAAGCTTATGGATAGTATTTTTGTGGCATGCACTTCCGTTGCCTTGTCTTTCTCTCTCTATATAGCAGACGTTGACCCTGCCTCGGCTTTTGTAGTCACTTCACCCAGGAAATTGCAGACTGATGAACTTGCTACTGTTCGTCTCTTCCAAGAGAATACACCTTCCGTTGTGTATATTACTAATCTTGCTTCCAGGTGATCTATCAATGAGGATGGTCCTTTTTTTTTTTTCCTTATATGTTAGTAATTCACGTGCATTTGAGTTTGTAGATATAGTGCTAGATGAAAGTCTGCTAGATGTATTTCCTGTTATTGTAATTGCCGTCCACCTTTGTTTTTCCGGTTTGGTTAATTTGGATTCCGTTTGTGATATAATAGGCAGGATATGTTCACACTGGATGTATTTGAGGTGCCTCAAGGGTCTGGGTCAGGCTTCGTCTGGGATAAAAATGGAAATATTGTTACTAATTATCATGTGATTCGAGGTGCTTCTGATCTCAGGTGAGTTAATTGGCAACTGGAAACACATTTTTCTGATTTAAACAAGTTTCTATTTATTAGTATCTGCCTAAATGATTTCAGTTTCAAGTTCCTTGCCACAGTCCTCATATTATTTCTATATGCTATCTGACTGCTCTTATACTAGCATGATTCTACAACTTCGATTGTCTTAGCTAATCGTGGAGTATTAGGAAACCTGCAATTTTTTTCATGATATGAATTTGTTTGGATTGAACAGTCTGTTAGTTGCTTAATTATGGTTTTACGCTCTAATTGCTAGTACTAATATAGTCTTAGTCTTGCTCAGAGTGACTCTTGCTGATCAAACTACTTATGATGCAAAAGTTGTTGGATTTGACCAAGATAAAGATGTTGCTGTGTTGCATATTGATGCACCAAAAGACAAGTTGCGACCTATACCAATTGGCGTATCGGCAGACTTGCTCGTTGGTCAAAAAGTATTTGCTATTGGAAATCCAGTATGTGACGAAATACAAACCTGCTAGAGAATTCTGTTCATGTAATAATAGTACTTTTATCTGCTCTGTTGTCCCTTCTCTAAACCTAGTTTGAGCCATTCTATATTCAGCTTTCGCTTTAGAGGAAAACTATCGTCTTGCAGGCGTTCATGAGCATTACAACAATTAGAAAGTATTAATTTGCATATAGAATGCTAGTGCATTTTGTTATCAATAAAATTTGTGCAAGTAAGGAAAAAAACCAACTGACAGCGAGTAAGGAAAAAAAACAACTGATAGCAAGTACAACTTAGTTCAGTCTTCTGGTTCAACTGCTTGCTTGTAAGCGCACCTTCTTCTCCAGCTAAAGAATCAGTATCTGAAAGTTGGCTGTTACTTCTGAACATTCATCGCCTGCTAATATTTTTAACTGCTTCTTTTCCCATTAGTTTAAAGCATAACAATTCCCCCCCTGTAGTGCTCCAACTTCTGCCAAAATGTGTCACTGACTTGCACTTAAATCAAATTACTTTTTAAGGGCCCTAAAACAATTGTTGACTTACACATTGAAAATCTCTTGTTGCAATGAGTATATGTTTCTTGTGTTTAGGTACCCCACCACTTCACACCTCTTTTTCCTCTTTATTCATATAAATTTACTATAAAACATGAATATTTTACTTCTCTTTTATGTTTCATATGTTAAACACATGATGAATGATTTATAATGTAAATATCTTTGCAGTTTGGACTTGATCATACACTCACCACT</genome_strand>
        <mrna_strand>TCTGCGCTCGGCGTATTTGCTCTAACTATGCCTCTTCCGGTGACCAGTCCAACTACGGGAAGAAGCTTATGGATAGTATTTTTGTGGCATGCACTTCCGTTGCCTTGTCTTTCTCTCTCTATATAGCAGACGTTGACCCTGCCTCGGCTTTTGTAGTCACTTCACCCAGGAAATTGCAGACTGATGAACTTGCTACTGTTCGTCTCTTCCAAGAGAATACACCTTCCGTTGTGTATATTACTAATCTTGCTTCCAG.......................................................................................................................................................................................GCAGGATATGTTCACACTGGATGTATTTGAGGTGCCTCAAGGGTCTGGGTCAGGCTTCGTCTGGGATAAAAATGGAAATATTGTTACTAATTATCATGTGATTCGAGGTGCTTCTGATCTCAG...................................................................................................................................................................................................................................................................................................................AGTGACTCTTGCTGATCAAACTACTTATGATGCAAAAGTTGTTGGATTTGACCAAGATAAAGATGTTGCTGTGTTGCATATTGATGCACCAAAAGACAAGTTGCGACCTATACCAATTGGCGTATCGGCAGACTTGCTCGTTGGTCAAAAAGTATTTGCTATTGGAAATCCA....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTTGGACTTGATCATACACTCACCACT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0236E02-u8qcS/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E276746" ref_strand="+" ref_description="SGN-E276746 [cLEN-14-J8]">
      <seq>tctgcgctcggcgtatttgctctaactatgcctcttccggtgaccagtccaactacgggaagaagcttatggatagtatttttgtggcatgcacttccgttgccttgtctttctctctctatatagcagacgttgaccctgcctcggcttttgtagtcacttcacccaggaaattgcagactgatgaacttgctactgttcgtctcttccaagagaatacaccttccgttgtgtatattactaatcttgcttccaggcaggatatgttcacactggatgtatttgaggtgcctcaagggtctgggtcacgcttcgtctgggataaaaatggaaatattgttactaattatcatgtgattcgaggtgcttctgatctcagagtgactcttgctgatcaaactacttatgatgcaaaagttgttggatttgaccaagataaagatgttgctgtgttgcatattgatgcacc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0236E02-u8qcS/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0236E02.1" temp_strand="+" temp_description="C02HBa0236E02.1  AC215430.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0236E02 sequenced_by:kribb upload_account_name:korea">
        <position start="20349" stop="21907"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="20649" g_stop="20904" g_length="256"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="256" r_length="256" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="20905" i_stop="21087" i_length="183">
            <donor d_prob="0.964" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="21088" g_stop="21210" g_length="123"/>
          <reference_exon_boundary r_type="cDNA" r_start="257" r_stop="379" r_length="123" r_score="0.992"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="21211" i_stop="21517" i_length="307">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="21518" g_stop="21607" g_length="90"/>
          <reference_exon_boundary r_type="cDNA" r_start="380" r_stop="469" r_length="90" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0236E02.1" gen_strand="+" ref_id="SGN-E276746" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>469</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0236E02.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E276746" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="20649" e_stop="20904"/>
          <exon e_start="21088" e_stop="21210"/>
          <exon e_start="21518" e_stop="21607"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCTGCGCTCGGCGTATTTGCTCTAACTATGCCTCTTCCGGTGACCAGTCCAACTACGGGAAGAAGCTTATGGATAGTATTTTTGTGGCATGCACTTCCGTTGCCTTGTCTTTCTCTCTCTATATAGCAGACGTTGACCCTGCCTCGGCTTTTGTAGTCACTTCACCCAGGAAATTGCAGACTGATGAACTTGCTACTGTTCGTCTCTTCCAAGAGAATACACCTTCCGTTGTGTATATTACTAATCTTGCTTCCAGGTGATCTATCAATGAGGATGGTCCTTTTTTTTTTTTCCTTATATGTTAGTAATTCACGTGCATTTGAGTTTGTAGATATAGTGCTAGATGAAAGTCTGCTAGATGTATTTCCTGTTATTGTAATTGCCGTCCACCTTTGTTTTTCCGGTTTGGTTAATTTGGATTCCGTTTGTGATATAATAGGCAGGATATGTTCACACTGGATGTATTTGAGGTGCCTCAAGGGTCTGGGTCAGGCTTCGTCTGGGATAAAAATGGAAATATTGTTACTAATTATCATGTGATTCGAGGTGCTTCTGATCTCAGGTGAGTTAATTGGCAACTGGAAACACATTTTTCTGATTTAAACAAGTTTCTATTTATTAGTATCTGCCTAAATGATTTCAGTTTCAAGTTCCTTGCCACAGTCCTCATATTATTTCTATATGCTATCTGACTGCTCTTATACTAGCATGATTCTACAACTTCGATTGTCTTAGCTAATCGTGGAGTATTAGGAAACCTGCAATTTTTTTCATGATATGAATTTGTTTGGATTGAACAGTCTGTTAGTTGCTTAATTATGGTTTTACGCTCTAATTGCTAGTACTAATATAGTCTTAGTCTTGCTCAGAGTGACTCTTGCTGATCAAACTACTTATGATGCAAAAGTTGTTGGATTTGACCAAGATAAAGATGTTGCTGTGTTGCATATTGATGCACC</genome_strand>
        <mrna_strand>TCTGCGCTCGGCGTATTTGCTCTAACTATGCCTCTTCCGGTGACCAGTCCAACTACGGGAAGAAGCTTATGGATAGTATTTTTGTGGCATGCACTTCCGTTGCCTTGTCTTTCTCTCTCTATATAGCAGACGTTGACCCTGCCTCGGCTTTTGTAGTCACTTCACCCAGGAAATTGCAGACTGATGAACTTGCTACTGTTCGTCTCTTCCAAGAGAATACACCTTCCGTTGTGTATATTACTAATCTTGCTTCCAG.......................................................................................................................................................................................GCAGGATATGTTCACACTGGATGTATTTGAGGTGCCTCAAGGGTCTGGGTCACGCTTCGTCTGGGATAAAAATGGAAATATTGTTACTAATTATCATGTGATTCGAGGTGCTTCTGATCTCAG...................................................................................................................................................................................................................................................................................................................AGTGACTCTTGCTGATCAAACTACTTATGATGCAAAAGTTGTTGGATTTGACCAAGATAAAGATGTTGCTGTGTTGCATATTGATGCACC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0236E02-u8qcS/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E272938" ref_strand="+" ref_description="SGN-E272938 [cLEM-25-N14]">
      <seq>ttatggatagtatttttgtggcatgcacttccgttgccttgtctttctctctctatatagcagacgttgaccctgcctcggcttttgtagtcacttcacccaggaaattgcagactgatgaacttgctactgttcgtctcttccaagagaatacaccttccgttgtgtatactactaatcttgcttccaggcaggatatgttcacactggatgtatttgaggtgcctcaagggtctgggtcaggcttcgtctgggataaaaatggaaatattgttactaattatcatgtgattcgaggtgcttctgatctcagagtgactcttgctgatcaaactacttatgatgcaaaagttgttggatttgaccaagataaagatgttgctgtgttgcatattgatgcaccaaaagacaagttgcgacctataccaattggcgtatcggcagacttgctcgttggtcaaaaagtatttgctattggaaatccagtatgtgacgaaatacaaacctgctagagaattctgttcattttggacttgatcatacactcacc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0236E02-u8qcS/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0236E02.1" temp_strand="+" temp_description="C02HBa0236E02.1  AC215430.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0236E02 sequenced_by:kribb upload_account_name:korea">
        <position start="20415" stop="22737"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="20715" g_stop="20904" g_length="190"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="190" r_length="190" r_score="0.995"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="20905" i_stop="21087" i_length="183">
            <donor d_prob="0.964" d_score="0.98"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="21088" g_stop="21210" g_length="123"/>
          <reference_exon_boundary r_type="cDNA" r_start="191" r_stop="313" r_length="123" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="21211" i_stop="21517" i_length="307">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="21518" g_stop="21730" g_length="213"/>
          <reference_exon_boundary r_type="cDNA" r_start="314" r_stop="526" r_length="213" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="21731" i_stop="22413" i_length="683">
            <donor d_prob="0.779" d_score="1.00"/>
            <acceptor a_prob="0.991" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="22414" g_stop="22437" g_length="24"/>
          <reference_exon_boundary r_type="cDNA" r_start="527" r_stop="550" r_length="24" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0236E02.1" gen_strand="+" ref_id="SGN-E272938" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>550</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0236E02.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E272938" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="20715" e_stop="20904"/>
          <exon e_start="21088" e_stop="21210"/>
          <exon e_start="21518" e_stop="21730"/>
          <exon e_start="22414" e_stop="22437"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTATGGATAGTATTTTTGTGGCATGCACTTCCGTTGCCTTGTCTTTCTCTCTCTATATAGCAGACGTTGACCCTGCCTCGGCTTTTGTAGTCACTTCACCCAGGAAATTGCAGACTGATGAACTTGCTACTGTTCGTCTCTTCCAAGAGAATACACCTTCCGTTGTGTATATTACTAATCTTGCTTCCAGGTGATCTATCAATGAGGATGGTCCTTTTTTTTTTTTCCTTATATGTTAGTAATTCACGTGCATTTGAGTTTGTAGATATAGTGCTAGATGAAAGTCTGCTAGATGTATTTCCTGTTATTGTAATTGCCGTCCACCTTTGTTTTTCCGGTTTGGTTAATTTGGATTCCGTTTGTGATATAATAGGCAGGATATGTTCACACTGGATGTATTTGAGGTGCCTCAAGGGTCTGGGTCAGGCTTCGTCTGGGATAAAAATGGAAATATTGTTACTAATTATCATGTGATTCGAGGTGCTTCTGATCTCAGGTGAGTTAATTGGCAACTGGAAACACATTTTTCTGATTTAAACAAGTTTCTATTTATTAGTATCTGCCTAAATGATTTCAGTTTCAAGTTCCTTGCCACAGTCCTCATATTATTTCTATATGCTATCTGACTGCTCTTATACTAGCATGATTCTACAACTTCGATTGTCTTAGCTAATCGTGGAGTATTAGGAAACCTGCAATTTTTTTCATGATATGAATTTGTTTGGATTGAACAGTCTGTTAGTTGCTTAATTATGGTTTTACGCTCTAATTGCTAGTACTAATATAGTCTTAGTCTTGCTCAGAGTGACTCTTGCTGATCAAACTACTTATGATGCAAAAGTTGTTGGATTTGACCAAGATAAAGATGTTGCTGTGTTGCATATTGATGCACCAAAAGACAAGTTGCGACCTATACCAATTGGCGTATCGGCAGACTTGCTCGTTGGTCAAAAAGTATTTGCTATTGGAAATCCAGTATGTGACGAAATACAAACCTGCTAGAGAATTCTGTTCATGTAATAATAGTACTTTTATCTGCTCTGTTGTCCCTTCTCTAAACCTAGTTTGAGCCATTCTATATTCAGCTTTCGCTTTAGAGGAAAACTATCGTCTTGCAGGCGTTCATGAGCATTACAACAATTAGAAAGTATTAATTTGCATATAGAATGCTAGTGCATTTTGTTATCAATAAAATTTGTGCAAGTAAGGAAAAAAACCAACTGACAGCGAGTAAGGAAAAAAAACAACTGATAGCAAGTACAACTTAGTTCAGTCTTCTGGTTCAACTGCTTGCTTGTAAGCGCACCTTCTTCTCCAGCTAAAGAATCAGTATCTGAAAGTTGGCTGTTACTTCTGAACATTCATCGCCTGCTAATATTTTTAACTGCTTCTTTTCCCATTAGTTTAAAGCATAACAATTCCCCCCCTGTAGTGCTCCAACTTCTGCCAAAATGTGTCACTGACTTGCACTTAAATCAAATTACTTTTTAAGGGCCCTAAAACAATTGTTGACTTACACATTGAAAATCTCTTGTTGCAATGAGTATATGTTTCTTGTGTTTAGGTACCCCACCACTTCACACCTCTTTTTCCTCTTTATTCATATAAATTTACTATAAAACATGAATATTTTACTTCTCTTTTATGTTTCATATGTTAAACACATGATGAATGATTTATAATGTAAATATCTTTGCAGTTTGGACTTGATCATACACTCACC</genome_strand>
        <mrna_strand>TTATGGATAGTATTTTTGTGGCATGCACTTCCGTTGCCTTGTCTTTCTCTCTCTATATAGCAGACGTTGACCCTGCCTCGGCTTTTGTAGTCACTTCACCCAGGAAATTGCAGACTGATGAACTTGCTACTGTTCGTCTCTTCCAAGAGAATACACCTTCCGTTGTGTATACTACTAATCTTGCTTCCAG.......................................................................................................................................................................................GCAGGATATGTTCACACTGGATGTATTTGAGGTGCCTCAAGGGTCTGGGTCAGGCTTCGTCTGGGATAAAAATGGAAATATTGTTACTAATTATCATGTGATTCGAGGTGCTTCTGATCTCAG...................................................................................................................................................................................................................................................................................................................AGTGACTCTTGCTGATCAAACTACTTATGATGCAAAAGTTGTTGGATTTGACCAAGATAAAGATGTTGCTGTGTTGCATATTGATGCACCAAAAGACAAGTTGCGACCTATACCAATTGGCGTATCGGCAGACTTGCTCGTTGGTCAAAAAGTATTTGCTATTGGAAATCCAGTATGTGACGAAATACAAACCTGCTAGAGAATTCTGTTCAT...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTTGGACTTGATCATACACTCACC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0236E02-u8qcS/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E616284" ref_strand="+" ref_description="SGN-E616284 [66092]">
      <seq>ttgatttgaggtgcctcaagggtctgggtcaggcttcgtctgggataaaaatggaaatattgttactaattatcatgtgattcgaggtgcttctgatctcagagtgactcttgctgatcaaactacttatgatgcaaaagttgttggatttgaccaagataaagatgttgctgtattgcatatcgatgcaccaaaagacaagttgcgacctataccaattggcgtatctgcagacttgctcgttggtcaaaaagtatttgctattggaaatccatttggacttgatcatacactcaccactggtgttatcagtggccttaggagagaaatcaattctgcagctactggccgcccaatccaagatgttattcagacagatgcagcaatcaatcctggtaacagtggagggccacttctagatagttctggaaatcttattggaataaatactgctatatattctccttccggtgcatcatcaggtgttggattttcaattccagttgatactgtcagtggcattgttgatcaattggtgcagtttgggaaagtcacaaggccaattttgggcataaagtttgcacctgatcagtccgttgagcaactgggagtcactggagtacttgtcctggatgctcctccaaatggtcctgcaggcaaagcaggtcttcta</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0236E02-u8qcS/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0236E02.1" temp_strand="+" temp_description="C02HBa0236E02.1  AC215430.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0236E02 sequenced_by:kribb upload_account_name:korea">
        <position start="20809" stop="23705"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="21109" g_stop="21210" g_length="102"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="102" r_length="102" r_score="0.980"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="21211" i_stop="21517" i_length="307">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="21518" g_stop="21689" g_length="172"/>
          <reference_exon_boundary r_type="cDNA" r_start="103" r_stop="274" r_length="172" r_score="0.983"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="21690" i_stop="22413" i_length="724">
            <donor d_prob="0.928" d_score="0.98"/>
            <acceptor a_prob="0.991" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="22414" g_stop="22451" g_length="38"/>
          <reference_exon_boundary r_type="cDNA" r_start="275" r_stop="312" r_length="38" r_score="0.974"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="22452" i_stop="22863" i_length="412">
            <donor d_prob="0.968" d_score="0.00"/>
            <acceptor a_prob="0.886" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="22864" g_stop="23062" g_length="199"/>
          <reference_exon_boundary r_type="cDNA" r_start="313" r_stop="511" r_length="199" r_score="0.990"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="23063" i_stop="23244" i_length="182">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="23245" g_stop="23397" g_length="153"/>
          <reference_exon_boundary r_type="cDNA" r_start="512" r_stop="664" r_length="153" r_score="0.987"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="23398" i_stop="23597" i_length="200">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.908" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="23598" g_stop="23606" g_length="9"/>
          <reference_exon_boundary r_type="cDNA" r_start="665" r_stop="673" r_length="9" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0236E02.1" gen_strand="+" ref_id="SGN-E616284" ref_strand="+">
        <total_alignment_score>0.986</total_alignment_score>
        <cumulative_length_of_scored_exons>673</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0236E02.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E616284" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="21109" e_stop="21210"/>
          <exon e_start="21518" e_stop="21689"/>
          <exon e_start="22414" e_stop="22451"/>
          <exon e_start="22864" e_stop="23062"/>
          <exon e_start="23245" e_stop="23397"/>
          <exon e_start="23598" e_stop="23606"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGTATTTGAGGTGCCTCAAGGGTCTGGGTCAGGCTTCGTCTGGGATAAAAATGGAAATATTGTTACTAATTATCATGTGATTCGAGGTGCTTCTGATCTCAGGTGAGTTAATTGGCAACTGGAAACACATTTTTCTGATTTAAACAAGTTTCTATTTATTAGTATCTGCCTAAATGATTTCAGTTTCAAGTTCCTTGCCACAGTCCTCATATTATTTCTATATGCTATCTGACTGCTCTTATACTAGCATGATTCTACAACTTCGATTGTCTTAGCTAATCGTGGAGTATTAGGAAACCTGCAATTTTTTTCATGATATGAATTTGTTTGGATTGAACAGTCTGTTAGTTGCTTAATTATGGTTTTACGCTCTAATTGCTAGTACTAATATAGTCTTAGTCTTGCTCAGAGTGACTCTTGCTGATCAAACTACTTATGATGCAAAAGTTGTTGGATTTGACCAAGATAAAGATGTTGCTGTGTTGCATATTGATGCACCAAAAGACAAGTTGCGACCTATACCAATTGGCGTATCGGCAGACTTGCTCGTTGGTCAAAAAGTATTTGCTATTGGAAATCCAGTATGTGACGAAATACAAACCTGCTAGAGAATTCTGTTCATGTAATAATAGTACTTTTATCTGCTCTGTTGTCCCTTCTCTAAACCTAGTTTGAGCCATTCTATATTCAGCTTTCGCTTTAGAGGAAAACTATCGTCTTGCAGGCGTTCATGAGCATTACAACAATTAGAAAGTATTAATTTGCATATAGAATGCTAGTGCATTTTGTTATCAATAAAATTTGTGCAAGTAAGGAAAAAAACCAACTGACAGCGAGTAAGGAAAAAAAACAACTGATAGCAAGTACAACTTAGTTCAGTCTTCTGGTTCAACTGCTTGCTTGTAAGCGCACCTTCTTCTCCAGCTAAAGAATCAGTATCTGAAAGTTGGCTGTTACTTCTGAACATTCATCGCCTGCTAATATTTTTAACTGCTTCTTTTCCCATTAGTTTAAAGCATAACAATTCCCCCCCTGTAGTGCTCCAACTTCTGCCAAAATGTGTCACTGACTTGCACTTAAATCAAATTACTTTTTAAGGGCCCTAAAACAATTGTTGACTTACACATTGAAAATCTCTTGTTGCAATGAGTATATGTTTCTTGTGTTTAGGTACCCCACCACTTCACACCTCTTTTTCCTCTTTATTCATATAAATTTACTATAAAACATGAATATTTTACTTCTCTTTTATGTTTCATATGTTAAACACATGATGAATGATTTATAATGTAAATATCTTTGCAGTTTGGACTTGATCATACACTCACCACTGGTGTAATCAGGTATTTAGACATTTCATTTATGGTGTGCAGGTTCCTAATGTTCAGATATTCCAGTGAAATGGTGTTAACTATGTTTCTGTGAAGATAGGAGATGAAATAAATGAATCTAGCCACTCAAAGTCGTGGTAAAAATGACGTTAACTTCTTCCATTGTTTAAAACGGAGATGAAGTAGAGAATTTTGTTTAATCTTTTCCGTGTATTCAACTGTAAGACTAGCCTTGTGATGTTGACGTGGTTGTCACTGTTGAGTGCCTTGCACCCATAAATTCCAAGAAGCAAACATAAATACTAACCATATGTCATGGTAAATGGATACATATGCATAAGCAAGCTGTGTTGGATATGGATTAACTTAATGCTATGGATCATGCATATTCTTTAACATCACTGATCAATTTATATGTTTCTAGTGGGCTTAGGAGAGAAATCAATTCTGCGGCTACTGGCCGCCCAATCCAAGATGTTATTCAGACAGATGCAGCAATCAATCCTGGTAACAGTGGAGGGCCACTTCTAGATAGTTCTGGAAATCTTATTGGAATAAATACTGCTATATATTCTCCTTCCGGTGCATCATCAGGTGTTGGATTTTCAATTCCAGTTGATACTGTAAGTTGTTATTTGTCTTTCAGAATTTTATTATTTGCAATGCTGATTGAAACTTTTAGGTTAAACATACTTCCCCATATAAAGCAAACTGATTTATTACACCCTGTGGTTCAGAAAGTTGCCCTTGCTTCTACTACGATGTGGTAGTCTCTCCCTGATGATTTTGATTTTTACCTATTCAGGTCAGTGGCATTGTTGATCAGTTAGTGCAGTTTGGGAAAGTCACAAGGCCAATTTTGGGCATAAAGTTTGCACCTGATCAGTCCGTTGAGCAACTGGGAGTCACTGGAGTACTTGTCCTGGATGCTCCTCCAAATGGTCCTGCAGGCAAAGCAGTATGTTATTTCCTGTATCTTTTCTCTTGACATTCCTTACCAGTTTCTCCTTCCTTTTATACACTATAATTATCAGCAGTTTCCACCAGTTATATCACCCTACCGATTTTCTTTCATGTGATTGTTTGTACAAGCCAGTATAAATTTGTGACCGACATGATGAGAAACCGAATATGAGATGTTAAATCTTGTAAATGCAGGGTCTTCTA</genome_strand>
        <mrna_strand>TTGATTTGAGGTGCCTCAAGGGTCTGGGTCAGGCTTCGTCTGGGATAAAAATGGAAATATTGTTACTAATTATCATGTGATTCGAGGTGCTTCTGATCTCAG...................................................................................................................................................................................................................................................................................................................AGTGACTCTTGCTGATCAAACTACTTATGATGCAAAAGTTGTTGGATTTGACCAAGATAAAGATGTTGCTGTATTGCATATCGATGCACCAAAAGACAAGTTGCGACCTATACCAATTGGCGTATCTGCAGACTTGCTCGTTGGTCAAAAAGTATTTGCTATTGGAAATCCA....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTTGGACTTGATCATACACTCACCACTGGTGTTATCAG............................................................................................................................................................................................................................................................................................................................................................................................................................TGGCCTTAGGAGAGAAATCAATTCTGCAGCTACTGGCCGCCCAATCCAAGATGTTATTCAGACAGATGCAGCAATCAATCCTGGTAACAGTGGAGGGCCACTTCTAGATAGTTCTGGAAATCTTATTGGAATAAATACTGCTATATATTCTCCTTCCGGTGCATCATCAGGTGTTGGATTTTCAATTCCAGTTGATACT......................................................................................................................................................................................GTCAGTGGCATTGTTGATCAATTGGTGCAGTTTGGGAAAGTCACAAGGCCAATTTTGGGCATAAAGTTTGCACCTGATCAGTCCGTTGAGCAACTGGGAGTCACTGGAGTACTTGTCCTGGATGCTCCTCCAAATGGTCCTGCAGGCAAAGCA........................................................................................................................................................................................................GGTCTTCTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0236E02-u8qcS/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E303366" ref_strand="+" ref_description="SGN-E303366 [cLEX-2-B5]">
      <seq>gataaaaatggaaatattgttactaattatcatgtgattcgaggtgcttctgatctcaaagtgactcttgctgatcaaactacttatgatgcaaacgttgttggatttgaccaagatcaagatgttgctgtgttgcatattgatgcaccaaaagacaagttgcgacctataccaattggcgtctcggcagacttgctcgttggtcaaaaagtatttgctattggaaatccatttggacttgatcatacactcaccactggtgtaatcagtgggcttaggagagaaatcaattctgcggctactggccgaccaatccaagatgttattcagacagatgcagcaatcaatcctggtaacagtggagggccacttatagatagttctggaaatcttattggaataaatactgctatatattctccttccggagcatcatcaggtgttggattttcaattccagttgatactgacagtggcattgatgatcagttagtgcagtttgggaaagtcacaatgccaattctgggcataaagatcgcacctgatcagtccgtagagcaactg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0236E02-u8qcS/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0236E02.1" temp_strand="+" temp_description="C02HBa0236E02.1  AC215430.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0236E02 sequenced_by:kribb upload_account_name:korea">
        <position start="20852" stop="23640"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="21152" g_stop="21210" g_length="59"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="59" r_length="59" r_score="0.983"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="21211" i_stop="21517" i_length="307">
            <donor d_prob="0.997" d_score="0.98"/>
            <acceptor a_prob="0.000" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="21518" g_stop="21689" g_length="172"/>
          <reference_exon_boundary r_type="cDNA" r_start="60" r_stop="231" r_length="172" r_score="0.983"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="21690" i_stop="22413" i_length="724">
            <donor d_prob="0.928" d_score="0.98"/>
            <acceptor a_prob="0.991" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="22414" g_stop="22451" g_length="38"/>
          <reference_exon_boundary r_type="cDNA" r_start="232" r_stop="269" r_length="38" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="22452" i_stop="22863" i_length="412">
            <donor d_prob="0.968" d_score="0.00"/>
            <acceptor a_prob="0.886" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="22864" g_stop="23062" g_length="199"/>
          <reference_exon_boundary r_type="cDNA" r_start="270" r_stop="468" r_length="199" r_score="0.985"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="23063" i_stop="23244" i_length="182">
            <donor d_prob="0.996" d_score="0.98"/>
            <acceptor a_prob="0.999" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="23245" g_stop="23340" g_length="96"/>
          <reference_exon_boundary r_type="cDNA" r_start="469" r_stop="564" r_length="96" r_score="0.927"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0236E02.1" gen_strand="+" ref_id="SGN-E303366" ref_strand="+">
        <total_alignment_score>0.973</total_alignment_score>
        <cumulative_length_of_scored_exons>564</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0236E02.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E303366" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="21152" e_stop="21210"/>
          <exon e_start="21518" e_stop="21689"/>
          <exon e_start="22414" e_stop="22451"/>
          <exon e_start="22864" e_stop="23062"/>
          <exon e_start="23245" e_stop="23340"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GATAAAAATGGAAATATTGTTACTAATTATCATGTGATTCGAGGTGCTTCTGATCTCAGGTGAGTTAATTGGCAACTGGAAACACATTTTTCTGATTTAAACAAGTTTCTATTTATTAGTATCTGCCTAAATGATTTCAGTTTCAAGTTCCTTGCCACAGTCCTCATATTATTTCTATATGCTATCTGACTGCTCTTATACTAGCATGATTCTACAACTTCGATTGTCTTAGCTAATCGTGGAGTATTAGGAAACCTGCAATTTTTTTCATGATATGAATTTGTTTGGATTGAACAGTCTGTTAGTTGCTTAATTATGGTTTTACGCTCTAATTGCTAGTACTAATATAGTCTTAGTCTTGCTCAGAGTGACTCTTGCTGATCAAACTACTTATGATGCAAAAGTTGTTGGATTTGACCAAGATAAAGATGTTGCTGTGTTGCATATTGATGCACCAAAAGACAAGTTGCGACCTATACCAATTGGCGTATCGGCAGACTTGCTCGTTGGTCAAAAAGTATTTGCTATTGGAAATCCAGTATGTGACGAAATACAAACCTGCTAGAGAATTCTGTTCATGTAATAATAGTACTTTTATCTGCTCTGTTGTCCCTTCTCTAAACCTAGTTTGAGCCATTCTATATTCAGCTTTCGCTTTAGAGGAAAACTATCGTCTTGCAGGCGTTCATGAGCATTACAACAATTAGAAAGTATTAATTTGCATATAGAATGCTAGTGCATTTTGTTATCAATAAAATTTGTGCAAGTAAGGAAAAAAACCAACTGACAGCGAGTAAGGAAAAAAAACAACTGATAGCAAGTACAACTTAGTTCAGTCTTCTGGTTCAACTGCTTGCTTGTAAGCGCACCTTCTTCTCCAGCTAAAGAATCAGTATCTGAAAGTTGGCTGTTACTTCTGAACATTCATCGCCTGCTAATATTTTTAACTGCTTCTTTTCCCATTAGTTTAAAGCATAACAATTCCCCCCCTGTAGTGCTCCAACTTCTGCCAAAATGTGTCACTGACTTGCACTTAAATCAAATTACTTTTTAAGGGCCCTAAAACAATTGTTGACTTACACATTGAAAATCTCTTGTTGCAATGAGTATATGTTTCTTGTGTTTAGGTACCCCACCACTTCACACCTCTTTTTCCTCTTTATTCATATAAATTTACTATAAAACATGAATATTTTACTTCTCTTTTATGTTTCATATGTTAAACACATGATGAATGATTTATAATGTAAATATCTTTGCAGTTTGGACTTGATCATACACTCACCACTGGTGTAATCAGGTATTTAGACATTTCATTTATGGTGTGCAGGTTCCTAATGTTCAGATATTCCAGTGAAATGGTGTTAACTATGTTTCTGTGAAGATAGGAGATGAAATAAATGAATCTAGCCACTCAAAGTCGTGGTAAAAATGACGTTAACTTCTTCCATTGTTTAAAACGGAGATGAAGTAGAGAATTTTGTTTAATCTTTTCCGTGTATTCAACTGTAAGACTAGCCTTGTGATGTTGACGTGGTTGTCACTGTTGAGTGCCTTGCACCCATAAATTCCAAGAAGCAAACATAAATACTAACCATATGTCATGGTAAATGGATACATATGCATAAGCAAGCTGTGTTGGATATGGATTAACTTAATGCTATGGATCATGCATATTCTTTAACATCACTGATCAATTTATATGTTTCTAGTGGGCTTAGGAGAGAAATCAATTCTGCGGCTACTGGCCGCCCAATCCAAGATGTTATTCAGACAGATGCAGCAATCAATCCTGGTAACAGTGGAGGGCCACTTCTAGATAGTTCTGGAAATCTTATTGGAATAAATACTGCTATATATTCTCCTTCCGGTGCATCATCAGGTGTTGGATTTTCAATTCCAGTTGATACTGTAAGTTGTTATTTGTCTTTCAGAATTTTATTATTTGCAATGCTGATTGAAACTTTTAGGTTAAACATACTTCCCCATATAAAGCAAACTGATTTATTACACCCTGTGGTTCAGAAAGTTGCCCTTGCTTCTACTACGATGTGGTAGTCTCTCCCTGATGATTTTGATTTTTACCTATTCAGGTCAGTGGCATTGTTGATCAGTTAGTGCAGTTTGGGAAAGTCACAAGGCCAATTTTGGGCATAAAGTTTGCACCTGATCAGTCCGTTGAGCAACTG</genome_strand>
        <mrna_strand>GATAAAAATGGAAATATTGTTACTAATTATCATGTGATTCGAGGTGCTTCTGATCTCAA...................................................................................................................................................................................................................................................................................................................AGTGACTCTTGCTGATCAAACTACTTATGATGCAAACGTTGTTGGATTTGACCAAGATCAAGATGTTGCTGTGTTGCATATTGATGCACCAAAAGACAAGTTGCGACCTATACCAATTGGCGTCTCGGCAGACTTGCTCGTTGGTCAAAAAGTATTTGCTATTGGAAATCCA....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTTGGACTTGATCATACACTCACCACTGGTGTAATCAG............................................................................................................................................................................................................................................................................................................................................................................................................................TGGGCTTAGGAGAGAAATCAATTCTGCGGCTACTGGCCGACCAATCCAAGATGTTATTCAGACAGATGCAGCAATCAATCCTGGTAACAGTGGAGGGCCACTTATAGATAGTTCTGGAAATCTTATTGGAATAAATACTGCTATATATTCTCCTTCCGGAGCATCATCAGGTGTTGGATTTTCAATTCCAGTTGATACT......................................................................................................................................................................................GACAGTGGCATTGATGATCAGTTAGTGCAGTTTGGGAAAGTCACAATGCCAATTCTGGGCATAAAGATCGCACCTGATCAGTCCGTAGAGCAACTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0236E02-u8qcS/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E286262" ref_strand="+" ref_description="SGN-E286262 [cLES-11-P15]">
      <seq>gcgtatcggcagacttgctcgttggtcaaaaagtatttgctattggaaatccatttggacttgatcatacactcaccactggtgtaatcagtgggcttaggagagaaatcaattctgcggctactggccgcccaatccaagatgttattcagacagatgcagcaatcaatcctggtaacagtggagggccacttctagatagttctggaaatcttattggaataaatactgctatatattctccttccggtgcatcatcaggtgttggattttcaattccagttgatactgtcagtggcattgttgatcagttagtgcagtttgggaaagtcacaaggccaattttgggcataaagtttgcacctgatcagtccgttgagcaactgggagtcactggagtacttgtcctggatgctcctccaaatggtcctgcaggcaaagcaggtcttctacctactaaacgtgattcctacggaagacttattttaggtgatataatcacatctataaatggaaagaaagtctctaatggcaccgac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0236E02-u8qcS/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0236E02.1" temp_strand="+" temp_description="C02HBa0236E02.1  AC215430.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0236E02 sequenced_by:kribb upload_account_name:korea">
        <position start="21337" stop="23993"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="21637" g_stop="21689" g_length="53"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="53" r_length="53" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="21690" i_stop="22413" i_length="724">
            <donor d_prob="0.928" d_score="1.00"/>
            <acceptor a_prob="0.991" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="22414" g_stop="22451" g_length="38"/>
          <reference_exon_boundary r_type="cDNA" r_start="54" r_stop="91" r_length="38" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="22452" i_stop="22863" i_length="412">
            <donor d_prob="0.968" d_score="0.00"/>
            <acceptor a_prob="0.886" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="22864" g_stop="23062" g_length="199"/>
          <reference_exon_boundary r_type="cDNA" r_start="92" r_stop="290" r_length="199" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="23063" i_stop="23244" i_length="182">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="23245" g_stop="23397" g_length="153"/>
          <reference_exon_boundary r_type="cDNA" r_start="291" r_stop="443" r_length="153" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="23398" i_stop="23597" i_length="200">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.908" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="23598" g_stop="23693" g_length="96"/>
          <reference_exon_boundary r_type="cDNA" r_start="444" r_stop="539" r_length="96" r_score="0.990"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0236E02.1" gen_strand="+" ref_id="SGN-E286262" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>539</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0236E02.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E286262" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="21637" e_stop="21689"/>
          <exon e_start="22414" e_stop="22451"/>
          <exon e_start="22864" e_stop="23062"/>
          <exon e_start="23245" e_stop="23397"/>
          <exon e_start="23598" e_stop="23693"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCGTATCGGCAGACTTGCTCGTTGGTCAAAAAGTATTTGCTATTGGAAATCCAGTATGTGACGAAATACAAACCTGCTAGAGAATTCTGTTCATGTAATAATAGTACTTTTATCTGCTCTGTTGTCCCTTCTCTAAACCTAGTTTGAGCCATTCTATATTCAGCTTTCGCTTTAGAGGAAAACTATCGTCTTGCAGGCGTTCATGAGCATTACAACAATTAGAAAGTATTAATTTGCATATAGAATGCTAGTGCATTTTGTTATCAATAAAATTTGTGCAAGTAAGGAAAAAAACCAACTGACAGCGAGTAAGGAAAAAAAACAACTGATAGCAAGTACAACTTAGTTCAGTCTTCTGGTTCAACTGCTTGCTTGTAAGCGCACCTTCTTCTCCAGCTAAAGAATCAGTATCTGAAAGTTGGCTGTTACTTCTGAACATTCATCGCCTGCTAATATTTTTAACTGCTTCTTTTCCCATTAGTTTAAAGCATAACAATTCCCCCCCTGTAGTGCTCCAACTTCTGCCAAAATGTGTCACTGACTTGCACTTAAATCAAATTACTTTTTAAGGGCCCTAAAACAATTGTTGACTTACACATTGAAAATCTCTTGTTGCAATGAGTATATGTTTCTTGTGTTTAGGTACCCCACCACTTCACACCTCTTTTTCCTCTTTATTCATATAAATTTACTATAAAACATGAATATTTTACTTCTCTTTTATGTTTCATATGTTAAACACATGATGAATGATTTATAATGTAAATATCTTTGCAGTTTGGACTTGATCATACACTCACCACTGGTGTAATCAGGTATTTAGACATTTCATTTATGGTGTGCAGGTTCCTAATGTTCAGATATTCCAGTGAAATGGTGTTAACTATGTTTCTGTGAAGATAGGAGATGAAATAAATGAATCTAGCCACTCAAAGTCGTGGTAAAAATGACGTTAACTTCTTCCATTGTTTAAAACGGAGATGAAGTAGAGAATTTTGTTTAATCTTTTCCGTGTATTCAACTGTAAGACTAGCCTTGTGATGTTGACGTGGTTGTCACTGTTGAGTGCCTTGCACCCATAAATTCCAAGAAGCAAACATAAATACTAACCATATGTCATGGTAAATGGATACATATGCATAAGCAAGCTGTGTTGGATATGGATTAACTTAATGCTATGGATCATGCATATTCTTTAACATCACTGATCAATTTATATGTTTCTAGTGGGCTTAGGAGAGAAATCAATTCTGCGGCTACTGGCCGCCCAATCCAAGATGTTATTCAGACAGATGCAGCAATCAATCCTGGTAACAGTGGAGGGCCACTTCTAGATAGTTCTGGAAATCTTATTGGAATAAATACTGCTATATATTCTCCTTCCGGTGCATCATCAGGTGTTGGATTTTCAATTCCAGTTGATACTGTAAGTTGTTATTTGTCTTTCAGAATTTTATTATTTGCAATGCTGATTGAAACTTTTAGGTTAAACATACTTCCCCATATAAAGCAAACTGATTTATTACACCCTGTGGTTCAGAAAGTTGCCCTTGCTTCTACTACGATGTGGTAGTCTCTCCCTGATGATTTTGATTTTTACCTATTCAGGTCAGTGGCATTGTTGATCAGTTAGTGCAGTTTGGGAAAGTCACAAGGCCAATTTTGGGCATAAAGTTTGCACCTGATCAGTCCGTTGAGCAACTGGGAGTCACTGGAGTACTTGTCCTGGATGCTCCTCCAAATGGTCCTGCAGGCAAAGCAGTATGTTATTTCCTGTATCTTTTCTCTTGACATTCCTTACCAGTTTCTCCTTCCTTTTATACACTATAATTATCAGCAGTTTCCACCAGTTATATCACCCTACCGATTTTCTTTCATGTGATTGTTTGTACAAGCCAGTATAAATTTGTGACCGACATGATGAGAAACCGAATATGAGATGTTAAATCTTGTAAATGCAGGGTCTTCTACCTACTAAACGTGATTCCTACGGAAGACTTATTTTAGGTGATATAATCACATCTATAAATGGAAAGAAGGTCTCTAATGGCACCGAC</genome_strand>
        <mrna_strand>GCGTATCGGCAGACTTGCTCGTTGGTCAAAAAGTATTTGCTATTGGAAATCCA....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTTGGACTTGATCATACACTCACCACTGGTGTAATCAG............................................................................................................................................................................................................................................................................................................................................................................................................................TGGGCTTAGGAGAGAAATCAATTCTGCGGCTACTGGCCGCCCAATCCAAGATGTTATTCAGACAGATGCAGCAATCAATCCTGGTAACAGTGGAGGGCCACTTCTAGATAGTTCTGGAAATCTTATTGGAATAAATACTGCTATATATTCTCCTTCCGGTGCATCATCAGGTGTTGGATTTTCAATTCCAGTTGATACT......................................................................................................................................................................................GTCAGTGGCATTGTTGATCAGTTAGTGCAGTTTGGGAAAGTCACAAGGCCAATTTTGGGCATAAAGTTTGCACCTGATCAGTCCGTTGAGCAACTGGGAGTCACTGGAGTACTTGTCCTGGATGCTCCTCCAAATGGTCCTGCAGGCAAAGCA........................................................................................................................................................................................................GGTCTTCTACCTACTAAACGTGATTCCTACGGAAGACTTATTTTAGGTGATATAATCACATCTATAAATGGAAAGAAAGTCTCTAATGGCACCGAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0236E02-u8qcS/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E710799" ref_strand="+" ref_description="SGN-E710799 [FA56DB01]">
      <seq>ggcagacttgctcgttggtcaaaaagtatttgctattggaaatccatttggacttgatcatacactcaccactggtgtaatcagtgggcttaggagagaaatcaattctgcggctactggccgcccaatccaagatgttattcagacagatgcagcaatcaatcctggtaacagtggagggccacttctagatagttctggaaatcttattggaataaatactgctatatattctccttccggtgcatcatcaggtgttggattttcaattccagttgatactgtcagtggcattgttgatcagttagtgcagtttgggaaagtcacaaggccaattttgggcataaagtttgcacctgatcagtccgttgagcaactgggagtcactggagtacttgtcctggatgctcctccaaatggtcctgcaggcaaagcaggtcttctacctactaaacgtgattcctacggaagacttattttaggtgatataatcacatctataaatggaaagaaggtctctaatggcaccgacttgtacagaattcttgaccaatgcaaagttggagaaaaggtaattgtggaagtgctgcgtggggatcagaaagagaagatcccctgtacttcctggaacccaaagcctgaagaatcgtagttcctccaatggatagagtatgtgttgatatgcatttcttggccaaccaccccatattatt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0236E02-u8qcS/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0236E02.1" temp_strand="+" temp_description="C02HBa0236E02.1  AC215430.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0236E02 sequenced_by:kribb upload_account_name:korea">
        <position start="21344" stop="24627"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="21644" g_stop="21689" g_length="46"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="46" r_length="46" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="21690" i_stop="22413" i_length="724">
            <donor d_prob="0.928" d_score="1.00"/>
            <acceptor a_prob="0.991" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="22414" g_stop="22451" g_length="38"/>
          <reference_exon_boundary r_type="cDNA" r_start="47" r_stop="84" r_length="38" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="22452" i_stop="22863" i_length="412">
            <donor d_prob="0.968" d_score="0.00"/>
            <acceptor a_prob="0.886" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="22864" g_stop="23062" g_length="199"/>
          <reference_exon_boundary r_type="cDNA" r_start="85" r_stop="283" r_length="199" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="23063" i_stop="23244" i_length="182">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="23245" g_stop="23397" g_length="153"/>
          <reference_exon_boundary r_type="cDNA" r_start="284" r_stop="436" r_length="153" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="23398" i_stop="23597" i_length="200">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.908" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="23598" g_stop="23732" g_length="135"/>
          <reference_exon_boundary r_type="cDNA" r_start="437" r_stop="571" r_length="135" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="23733" i_stop="24188" i_length="456">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="24189" g_stop="24327" g_length="139"/>
          <reference_exon_boundary r_type="cDNA" r_start="572" r_stop="713" r_length="142" r_score="0.928"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0236E02.1" gen_strand="+" ref_id="SGN-E710799" ref_strand="+">
        <total_alignment_score>0.984</total_alignment_score>
        <cumulative_length_of_scored_exons>710</cumulative_length_of_scored_exons>
        <coverage percentage="0.996" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0236E02.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E710799" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="21644" e_stop="21689"/>
          <exon e_start="22414" e_stop="22451"/>
          <exon e_start="22864" e_stop="23062"/>
          <exon e_start="23245" e_stop="23397"/>
          <exon e_start="23598" e_stop="23732"/>
          <exon e_start="24189" e_stop="24327"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGCAGACTTGCTCGTTGGTCAAAAAGTATTTGCTATTGGAAATCCAGTATGTGACGAAATACAAACCTGCTAGAGAATTCTGTTCATGTAATAATAGTACTTTTATCTGCTCTGTTGTCCCTTCTCTAAACCTAGTTTGAGCCATTCTATATTCAGCTTTCGCTTTAGAGGAAAACTATCGTCTTGCAGGCGTTCATGAGCATTACAACAATTAGAAAGTATTAATTTGCATATAGAATGCTAGTGCATTTTGTTATCAATAAAATTTGTGCAAGTAAGGAAAAAAACCAACTGACAGCGAGTAAGGAAAAAAAACAACTGATAGCAAGTACAACTTAGTTCAGTCTTCTGGTTCAACTGCTTGCTTGTAAGCGCACCTTCTTCTCCAGCTAAAGAATCAGTATCTGAAAGTTGGCTGTTACTTCTGAACATTCATCGCCTGCTAATATTTTTAACTGCTTCTTTTCCCATTAGTTTAAAGCATAACAATTCCCCCCCTGTAGTGCTCCAACTTCTGCCAAAATGTGTCACTGACTTGCACTTAAATCAAATTACTTTTTAAGGGCCCTAAAACAATTGTTGACTTACACATTGAAAATCTCTTGTTGCAATGAGTATATGTTTCTTGTGTTTAGGTACCCCACCACTTCACACCTCTTTTTCCTCTTTATTCATATAAATTTACTATAAAACATGAATATTTTACTTCTCTTTTATGTTTCATATGTTAAACACATGATGAATGATTTATAATGTAAATATCTTTGCAGTTTGGACTTGATCATACACTCACCACTGGTGTAATCAGGTATTTAGACATTTCATTTATGGTGTGCAGGTTCCTAATGTTCAGATATTCCAGTGAAATGGTGTTAACTATGTTTCTGTGAAGATAGGAGATGAAATAAATGAATCTAGCCACTCAAAGTCGTGGTAAAAATGACGTTAACTTCTTCCATTGTTTAAAACGGAGATGAAGTAGAGAATTTTGTTTAATCTTTTCCGTGTATTCAACTGTAAGACTAGCCTTGTGATGTTGACGTGGTTGTCACTGTTGAGTGCCTTGCACCCATAAATTCCAAGAAGCAAACATAAATACTAACCATATGTCATGGTAAATGGATACATATGCATAAGCAAGCTGTGTTGGATATGGATTAACTTAATGCTATGGATCATGCATATTCTTTAACATCACTGATCAATTTATATGTTTCTAGTGGGCTTAGGAGAGAAATCAATTCTGCGGCTACTGGCCGCCCAATCCAAGATGTTATTCAGACAGATGCAGCAATCAATCCTGGTAACAGTGGAGGGCCACTTCTAGATAGTTCTGGAAATCTTATTGGAATAAATACTGCTATATATTCTCCTTCCGGTGCATCATCAGGTGTTGGATTTTCAATTCCAGTTGATACTGTAAGTTGTTATTTGTCTTTCAGAATTTTATTATTTGCAATGCTGATTGAAACTTTTAGGTTAAACATACTTCCCCATATAAAGCAAACTGATTTATTACACCCTGTGGTTCAGAAAGTTGCCCTTGCTTCTACTACGATGTGGTAGTCTCTCCCTGATGATTTTGATTTTTACCTATTCAGGTCAGTGGCATTGTTGATCAGTTAGTGCAGTTTGGGAAAGTCACAAGGCCAATTTTGGGCATAAAGTTTGCACCTGATCAGTCCGTTGAGCAACTGGGAGTCACTGGAGTACTTGTCCTGGATGCTCCTCCAAATGGTCCTGCAGGCAAAGCAGTATGTTATTTCCTGTATCTTTTCTCTTGACATTCCTTACCAGTTTCTCCTTCCTTTTATACACTATAATTATCAGCAGTTTCCACCAGTTATATCACCCTACCGATTTTCTTTCATGTGATTGTTTGTACAAGCCAGTATAAATTTGTGACCGACATGATGAGAAACCGAATATGAGATGTTAAATCTTGTAAATGCAGGGTCTTCTACCTACTAAACGTGATTCCTACGGAAGACTTATTTTAGGTGATATAATCACATCTATAAATGGAAAGAAGGTCTCTAATGGCACCGACTTGTACAGAATTCTTGACCAATGCAAAGTTGGAGAAAAGGTAATTCTCATACATCTATTACAAAAATTTTCATCTATATTGTTGGCTTAGAATTCATATGGAGTACAGAGAATTTCTCAAGCATACACCAACTCGCAACGCTTTTAGATAAACATCATATTTGGAATTGCACCTTTGCTTGCATGAAACTTTATTAGTTGATCTTCCTTTTTATTTCTGCAACTTTATTTAAGTGGTCTTTAAGAATATGAATAGTTAGGTATTTGACCTTGATATTGACAGTAGTAATGTTTCTCTTATCAATCTTGCTAAATATTTTGTTTTCCCCAAGTTTGTATACTTGCACATACTTTTTCATTAACATTTCCATTAGCTTTTCTCCTTCCAGTAATTATGAGATAATTGGAAAGTATTCAGTATGAAAAGGTAGTGAAACTTGGAACTACATTTGTGGAAATTGTAGAAAGCTAAGCTTACGGCTGATGTTATGAACAGGTAATTGTGGAAGTGCTGCGTGGGGATCAGAAAGAGAAGAT-CCCTGTACTT-CTGGAA-CCAAAGCCTGAAGAATCGTAGTTCCTCAAATGGATAGAGTATGTGTTGATATGCATTTCTTGGCGAACAAGCCCATATTATT</genome_strand>
        <mrna_strand>GGCAGACTTGCTCGTTGGTCAAAAAGTATTTGCTATTGGAAATCCA....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTTGGACTTGATCATACACTCACCACTGGTGTAATCAG............................................................................................................................................................................................................................................................................................................................................................................................................................TGGGCTTAGGAGAGAAATCAATTCTGCGGCTACTGGCCGCCCAATCCAAGATGTTATTCAGACAGATGCAGCAATCAATCCTGGTAACAGTGGAGGGCCACTTCTAGATAGTTCTGGAAATCTTATTGGAATAAATACTGCTATATATTCTCCTTCCGGTGCATCATCAGGTGTTGGATTTTCAATTCCAGTTGATACT......................................................................................................................................................................................GTCAGTGGCATTGTTGATCAGTTAGTGCAGTTTGGGAAAGTCACAAGGCCAATTTTGGGCATAAAGTTTGCACCTGATCAGTCCGTTGAGCAACTGGGAGTCACTGGAGTACTTGTCCTGGATGCTCCTCCAAATGGTCCTGCAGGCAAAGCA........................................................................................................................................................................................................GGTCTTCTACCTACTAAACGTGATTCCTACGGAAGACTTATTTTAGGTGATATAATCACATCTATAAATGGAAAGAAGGTCTCTAATGGCACCGACTTGTACAGAATTCTTGACCAATGCAAAGTTGGAGAAAAG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTAATTGTGGAAGTGCTGCGTGGGGATCAGAAAGAGAAGATCCCCTGTACTTCCTGGAACCCAAAGCCTGAAGAATCGTAGTTCCTCCAATGGATAGAGTATGTGTTGATATGCATTTCTTGGCCAACCACCCCATATTATT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0236E02-u8qcS/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E418572" ref_strand="-" ref_description="SGN-E418572 [STM-27-H10]">
      <seq>tggaaatccatttggacttgatcatacactcaccactggtgttatcagtggccttaggagagaaatcaattctgcagctactggccgcccaatccaagatgttattcagacagatgcagcaatcaatcctggtaacagtggagggccacttctagatagttctggaaatcttattggaataaatactgctatatattctccttccggtgcatcatcaggtgttggattttcaattccagttgatactgtcagtggcattgttgatcaattggtgcagtttgggaaagtcacaaggccaattttgggcataaagtttgcacctgatcagtccgttgagcaactgggagtcactggagtacttgtcctggatgctcctccaaatggtcctgcaggcaaagcaggtcttctacctactaaacgtgattcctacggaagacttattttaggtgatataatcacatctataaatggaaagaaggtctctaatggcactgacttgtacagaattcttgaccaatgcaaagttggagataaggtaattgtggaagtgctgcgtggggatcagaaagagaagatccctgtacttctggaaccaaagcctgaagaatcgtagttcctcaagtggataagagtatgtgttgatatgcatttcttggcgaacaagcccatattattagttcatcaattgttgaatagttgtgtatatacaaaaagtacacttaaaactagggtgcaagcaatatagttgggagtctcaacactgctgcctaaatatttctaaagtaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0236E02-u8qcS/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0236E02.1" temp_strand="+" temp_description="C02HBa0236E02.1  AC215430.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0236E02 sequenced_by:kribb upload_account_name:korea">
        <position start="22109" stop="24730"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="22414" g_stop="22451" g_length="38"/>
          <reference_exon_boundary r_type="cDNA" r_start="11" r_stop="48" r_length="38" r_score="0.974"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="22452" i_stop="22863" i_length="412">
            <donor d_prob="0.968" d_score="0.00"/>
            <acceptor a_prob="0.886" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="22864" g_stop="23062" g_length="199"/>
          <reference_exon_boundary r_type="cDNA" r_start="49" r_stop="247" r_length="199" r_score="0.990"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="23063" i_stop="23244" i_length="182">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="23245" g_stop="23397" g_length="153"/>
          <reference_exon_boundary r_type="cDNA" r_start="248" r_stop="400" r_length="153" r_score="0.987"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="23398" i_stop="23597" i_length="200">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.908" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="23598" g_stop="23732" g_length="135"/>
          <reference_exon_boundary r_type="cDNA" r_start="401" r_stop="535" r_length="135" r_score="0.985"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="23733" i_stop="24188" i_length="456">
            <donor d_prob="0.999" d_score="0.96"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="24189" g_stop="24439" g_length="251"/>
          <reference_exon_boundary r_type="cDNA" r_start="536" r_stop="789" r_length="254" r_score="0.928"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0236E02.1" gen_strand="+" ref_id="SGN-E418572" ref_strand="-">
        <total_alignment_score>0.967</total_alignment_score>
        <cumulative_length_of_scored_exons>776</cumulative_length_of_scored_exons>
        <coverage percentage="0.977" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0236E02.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E418572" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="22414" e_stop="22451"/>
          <exon e_start="22864" e_stop="23062"/>
          <exon e_start="23245" e_stop="23397"/>
          <exon e_start="23598" e_stop="23732"/>
          <exon e_start="24189" e_stop="24439"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTGGACTTGATCATACACTCACCACTGGTGTAATCAGGTATTTAGACATTTCATTTATGGTGTGCAGGTTCCTAATGTTCAGATATTCCAGTGAAATGGTGTTAACTATGTTTCTGTGAAGATAGGAGATGAAATAAATGAATCTAGCCACTCAAAGTCGTGGTAAAAATGACGTTAACTTCTTCCATTGTTTAAAACGGAGATGAAGTAGAGAATTTTGTTTAATCTTTTCCGTGTATTCAACTGTAAGACTAGCCTTGTGATGTTGACGTGGTTGTCACTGTTGAGTGCCTTGCACCCATAAATTCCAAGAAGCAAACATAAATACTAACCATATGTCATGGTAAATGGATACATATGCATAAGCAAGCTGTGTTGGATATGGATTAACTTAATGCTATGGATCATGCATATTCTTTAACATCACTGATCAATTTATATGTTTCTAGTGGGCTTAGGAGAGAAATCAATTCTGCGGCTACTGGCCGCCCAATCCAAGATGTTATTCAGACAGATGCAGCAATCAATCCTGGTAACAGTGGAGGGCCACTTCTAGATAGTTCTGGAAATCTTATTGGAATAAATACTGCTATATATTCTCCTTCCGGTGCATCATCAGGTGTTGGATTTTCAATTCCAGTTGATACTGTAAGTTGTTATTTGTCTTTCAGAATTTTATTATTTGCAATGCTGATTGAAACTTTTAGGTTAAACATACTTCCCCATATAAAGCAAACTGATTTATTACACCCTGTGGTTCAGAAAGTTGCCCTTGCTTCTACTACGATGTGGTAGTCTCTCCCTGATGATTTTGATTTTTACCTATTCAGGTCAGTGGCATTGTTGATCAGTTAGTGCAGTTTGGGAAAGTCACAAGGCCAATTTTGGGCATAAAGTTTGCACCTGATCAGTCCGTTGAGCAACTGGGAGTCACTGGAGTACTTGTCCTGGATGCTCCTCCAAATGGTCCTGCAGGCAAAGCAGTATGTTATTTCCTGTATCTTTTCTCTTGACATTCCTTACCAGTTTCTCCTTCCTTTTATACACTATAATTATCAGCAGTTTCCACCAGTTATATCACCCTACCGATTTTCTTTCATGTGATTGTTTGTACAAGCCAGTATAAATTTGTGACCGACATGATGAGAAACCGAATATGAGATGTTAAATCTTGTAAATGCAGGGTCTTCTACCTACTAAACGTGATTCCTACGGAAGACTTATTTTAGGTGATATAATCACATCTATAAATGGAAAGAAGGTCTCTAATGGCACCGACTTGTACAGAATTCTTGACCAATGCAAAGTTGGAGAAAAGGTAATTCTCATACATCTATTACAAAAATTTTCATCTATATTGTTGGCTTAGAATTCATATGGAGTACAGAGAATTTCTCAAGCATACACCAACTCGCAACGCTTTTAGATAAACATCATATTTGGAATTGCACCTTTGCTTGCATGAAACTTTATTAGTTGATCTTCCTTTTTATTTCTGCAACTTTATTTAAGTGGTCTTTAAGAATATGAATAGTTAGGTATTTGACCTTGATATTGACAGTAGTAATGTTTCTCTTATCAATCTTGCTAAATATTTTGTTTTCCCCAAGTTTGTATACTTGCACATACTTTTTCATTAACATTTCCATTAGCTTTTCTCCTTCCAGTAATTATGAGATAATTGGAAAGTATTCAGTATGAAAAGGTAGTGAAACTTGGAACTACATTTGTGGAAATTGTAGAAAGCTAAGCTTACGGCTGATGTTATGAACAGGTAATTGTGGAAGTGCTGCGTGGGGATCAGAAAGAGAAGATCCCTGTACTTCTGGAACCAAAGCCTGAAGAATCGTAGTTCCTCAAATGGAT-AGAGTATGTGTTGATATGCATTTCTTGGCGAACAAGCCCATATTATTAGTGCATCAATTGTTGAATGGTTGTGTATATAC-AAAACAACGCTTAAAACTAGGGTGCAAGCAATATAGTTGGGAGTCT-AACACTGCTGCCTAAATATTTCTACTATATTAG</genome_strand>
        <mrna_strand>TTTGGACTTGATCATACACTCACCACTGGTGTTATCAG............................................................................................................................................................................................................................................................................................................................................................................................................................TGGCCTTAGGAGAGAAATCAATTCTGCAGCTACTGGCCGCCCAATCCAAGATGTTATTCAGACAGATGCAGCAATCAATCCTGGTAACAGTGGAGGGCCACTTCTAGATAGTTCTGGAAATCTTATTGGAATAAATACTGCTATATATTCTCCTTCCGGTGCATCATCAGGTGTTGGATTTTCAATTCCAGTTGATACT......................................................................................................................................................................................GTCAGTGGCATTGTTGATCAATTGGTGCAGTTTGGGAAAGTCACAAGGCCAATTTTGGGCATAAAGTTTGCACCTGATCAGTCCGTTGAGCAACTGGGAGTCACTGGAGTACTTGTCCTGGATGCTCCTCCAAATGGTCCTGCAGGCAAAGCA........................................................................................................................................................................................................GGTCTTCTACCTACTAAACGTGATTCCTACGGAAGACTTATTTTAGGTGATATAATCACATCTATAAATGGAAAGAAGGTCTCTAATGGCACTGACTTGTACAGAATTCTTGACCAATGCAAAGTTGGAGATAAG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTAATTGTGGAAGTGCTGCGTGGGGATCAGAAAGAGAAGATCCCTGTACTTCTGGAACCAAAGCCTGAAGAATCGTAGTTCCTCAAGTGGATAAGAGTATGTGTTGATATGCATTTCTTGGCGAACAAGCCCATATTATTAGTTCATCAATTGTTGAATAGTTGTGTATATACAAAAAGTACACTTAAAACTAGGGTGCAAGCAATATAGTTGGGAGTCTCAACACTGCTGCCTAAATATTTCTAAAGTAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0236E02-u8qcS/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E278984" ref_strand="-" ref_description="SGN-E278984 [cLER-2-N19]">
      <seq>tgatcagtccgttgagcaactgggagtcactggagtacttgtcctggatgctcctccaaatggtcctgcaggcaaagcaggtcttctacctactaaacgtgattcctacggaagacttattttaggtgatataatcacatctataaatggaaagaaggtctctaatggcaccgacttgtacagaattcttgaccaatgcaaagttggagaaaaggtaattgtggaagtgctgcgtggggatcagaaagagaagatccctgtacttctggaaccaaagcctgaagaatcgtagttcctcaaatggatagagtatgtgttgatatgcatttcttggcgaacaagcccatattattagtgcatcaattgttgaatggttgtgtatatacaaaacaacgcttaaaactagggtgcaagcaatatagttgggagtctaacactgctgcctaaatatttctactatattagatatcctcaaattgtataaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0236E02-u8qcS/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0236E02.1" temp_strand="+" temp_description="C02HBa0236E02.1  AC215430.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0236E02 sequenced_by:kribb upload_account_name:korea">
        <position start="23019" stop="24758"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="23319" g_stop="23397" g_length="79"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="79" r_length="79" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="23398" i_stop="23597" i_length="200">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.908" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="23598" g_stop="23732" g_length="135"/>
          <reference_exon_boundary r_type="cDNA" r_start="80" r_stop="214" r_length="135" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="23733" i_stop="24188" i_length="456">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="24189" g_stop="24460" g_length="272"/>
          <reference_exon_boundary r_type="cDNA" r_start="215" r_stop="486" r_length="272" r_score="0.993"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0236E02.1" gen_strand="+" ref_id="SGN-E278984" ref_strand="-">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>486</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0236E02.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E278984" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="23319" e_stop="23397"/>
          <exon e_start="23598" e_stop="23732"/>
          <exon e_start="24189" e_stop="24460"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGATCAGTCCGTTGAGCAACTGGGAGTCACTGGAGTACTTGTCCTGGATGCTCCTCCAAATGGTCCTGCAGGCAAAGCAGTATGTTATTTCCTGTATCTTTTCTCTTGACATTCCTTACCAGTTTCTCCTTCCTTTTATACACTATAATTATCAGCAGTTTCCACCAGTTATATCACCCTACCGATTTTCTTTCATGTGATTGTTTGTACAAGCCAGTATAAATTTGTGACCGACATGATGAGAAACCGAATATGAGATGTTAAATCTTGTAAATGCAGGGTCTTCTACCTACTAAACGTGATTCCTACGGAAGACTTATTTTAGGTGATATAATCACATCTATAAATGGAAAGAAGGTCTCTAATGGCACCGACTTGTACAGAATTCTTGACCAATGCAAAGTTGGAGAAAAGGTAATTCTCATACATCTATTACAAAAATTTTCATCTATATTGTTGGCTTAGAATTCATATGGAGTACAGAGAATTTCTCAAGCATACACCAACTCGCAACGCTTTTAGATAAACATCATATTTGGAATTGCACCTTTGCTTGCATGAAACTTTATTAGTTGATCTTCCTTTTTATTTCTGCAACTTTATTTAAGTGGTCTTTAAGAATATGAATAGTTAGGTATTTGACCTTGATATTGACAGTAGTAATGTTTCTCTTATCAATCTTGCTAAATATTTTGTTTTCCCCAAGTTTGTATACTTGCACATACTTTTTCATTAACATTTCCATTAGCTTTTCTCCTTCCAGTAATTATGAGATAATTGGAAAGTATTCAGTATGAAAAGGTAGTGAAACTTGGAACTACATTTGTGGAAATTGTAGAAAGCTAAGCTTACGGCTGATGTTATGAACAGGTAATTGTGGAAGTGCTGCGTGGGGATCAGAAAGAGAAGATCCCTGTACTTCTGGAACCAAAGCCTGAAGAATCGTAGTTCCTCAAATGGATAGAGTATGTGTTGATATGCATTTCTTGGCGAACAAGCCCATATTATTAGTGCATCAATTGTTGAATGGTTGTGTATATACAAAACAACGCTTAAAACTAGGGTGCAAGCAATATAGTTGGGAGTCTAACACTGCTGCCTAAATATTTCTACTATATTAGATATCCTCAAATTGTATAATG</genome_strand>
        <mrna_strand>TGATCAGTCCGTTGAGCAACTGGGAGTCACTGGAGTACTTGTCCTGGATGCTCCTCCAAATGGTCCTGCAGGCAAAGCA........................................................................................................................................................................................................GGTCTTCTACCTACTAAACGTGATTCCTACGGAAGACTTATTTTAGGTGATATAATCACATCTATAAATGGAAAGAAGGTCTCTAATGGCACCGACTTGTACAGAATTCTTGACCAATGCAAAGTTGGAGAAAAG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTAATTGTGGAAGTGCTGCGTGGGGATCAGAAAGAGAAGATCCCTGTACTTCTGGAACCAAAGCCTGAAGAATCGTAGTTCCTCAAATGGATAGAGTATGTGTTGATATGCATTTCTTGGCGAACAAGCCCATATTATTAGTGCATCAATTGTTGAATGGTTGTGTATATACAAAACAACGCTTAAAACTAGGGTGCAAGCAATATAGTTGGGAGTCTAACACTGCTGCCTAAATATTTCTACTATATTAGATATCCTCAAATTGTATAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0236E02-u8qcS/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E553344" ref_strand="+" ref_description="SGN-E553344 [cTSB-5-A23]">
      <seq>atcgtagttcctcaaatggatagagtatgtgttgatatgcatttcttggcgaacaagcccatattattagtgcatcaattgttgaatggttgtgtatatacaaaacaacgcttaaaactagggtgcaagcaatatagttgggagtctaacactgctgcctaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaagggggggggccgggccccctttccccctttgggggggtttttaaaaatttcggggggggtttttaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0236E02-u8qcS/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0236E02.1" temp_strand="+" temp_description="C02HBa0236E02.1  AC215430.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0236E02 sequenced_by:kribb upload_account_name:korea">
        <position start="23960" stop="95714"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="24260" g_stop="24421" g_length="162"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="162" r_length="162" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="24422" i_stop="24979" i_length="558">
            <donor d_prob="0.000" d_score="1.00"/>
            <acceptor a_prob="0.000" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="24980" g_stop="25014" g_length="35"/>
          <reference_exon_boundary r_type="cDNA" r_start="163" r_stop="197" r_length="35" r_score="0.657"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="25015" i_stop="25510" i_length="496">
            <donor d_prob="0.000" d_score="0.00"/>
            <acceptor a_prob="0.000" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="25511" g_stop="25545" g_length="35"/>
          <reference_exon_boundary r_type="cDNA" r_start="198" r_stop="232" r_length="35" r_score="0.771"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="25546" i_stop="25812" i_length="267">
            <donor d_prob="0.000" d_score="0.00"/>
            <acceptor a_prob="0.419" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="25813" g_stop="25843" g_length="31"/>
          <reference_exon_boundary r_type="cDNA" r_start="233" r_stop="261" r_length="29" r_score="0.484"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="25844" i_stop="26027" i_length="184">
            <donor d_prob="0.000" d_score="0.00"/>
            <acceptor a_prob="0.204" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="26028" g_stop="26064" g_length="37"/>
          <reference_exon_boundary r_type="cDNA" r_start="262" r_stop="298" r_length="37" r_score="0.541"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0236E02.1" gen_strand="+" ref_id="SGN-E553344" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>300</cumulative_length_of_scored_exons>
        <coverage percentage="0.993" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0236E02.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E553344" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="24260" e_stop="24421"/>
          <exon e_start="24980" e_stop="25014"/>
          <exon e_start="25511" e_stop="25545"/>
          <exon e_start="25813" e_stop="25843"/>
          <exon e_start="26028" e_stop="26064"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATCGTAGTTCCTCAAATGGATAGAGTATGTGTTGATATGCATTTCTTGGCGAACAAGCCCATATTATTAGTGCATCAATTGTTGAATGGTTGTGTATATACAAAACAACGCTTAAAACTAGGGTGCAAGCAATATAGTTGGGAGTCTAACACTGCTGCCTAAATATTTCTACTATATTAGATATCCTCAAATTGTATAATGTTAGGTAAGATGGGTGTCCACTTAACGGGATGACAGAACTACATCAATCTGGTGAAATTCCCAATCCTAAATCAGATGAAAAGGACGAACTAGAAAATTATTTGGCTAAAGTGTAAGCATGAACTGATTTGCCTTGCAAGTTCCTTAAAACTTAAAGAGCTAGATGTGACAACAAAAGGATAGCAAAAGTCCAGCATATTCTATTTACATTCAAGATACAAAAAGACCAAATTGATAAAGAAACATTATCAACTCTGACAATGAAATCTGAAAATTTTAGTCCAACACTAATATATTTACATTCAAGACATGGCAAGAACAAATTGATAGAGAAACTTTATCTATTTTGACAATCAAAATTGAAAACTCAAGTCTACCATTATTCTATTAGCCTTCAAGTTGCACCAAGAACCATCCAGGGTATCAGTGGAATGGACAGTAGTCCTCCACCCTTAGTCGGAGGTCCTAAACCCTAAATGCAGATTAGTTGGGATCAGGGCGCTGAACGCATTGATACAGAAAGAACAAATTGATAAAGAAATGACAACAAAGAAATCGAGAATTTAAGTGTAACGATTATATTAACATTCAAGATACACAAAGAACGAATTGATAGAGAGACTTTATTCTGACAATGAAAATAAAAACTTTACATTCATTTCTAGTACAAACCGTATACCACAAGCAGGAAGAATCTCAATTCCTCATTGCCCAAATAAGACAATTTTATTTTCCTAGTTTGTCTTATCCAAATGTACAAAAAGTTGATGCCCCAACATGACAACAAAGACCTTATTCTTTCATCTTTCTAGTATATCAATCTCTTGATCCTGGAGGAAAATATGAGACATGTTACCAAGAAGTGTTTCCAGGGATCTTGATTTCCTGCTCCTCACTCTCCCTGATTCTCTTAACAACTCAGTTAATCTCCTCTTCTCATCATCCACGTCAGGATTTGCTGTCCCCAGTTTCTCCTCTCTCATTCCGACGACGAATTCTAAGATTTCAATTGCATCATCCGTCCTGCAAACAATTACATTGTTATGATGAAAAAAAGAAAAAAAAAAACAGAAACCAAACATAACATGATATAGTAATATGACAATCGAAGACATCAATTACCTGCCCATAGCATCATAAGTTCCAGCAAGATTGCTATAGATTCCTAATGTATCTGCATGATATGGTCCACATTCAGTCTCTAAAATTATCCTTGCTTCTTCAAATAGGTCCCCAGCCTCATTAATTGCATAAAGTTGTACACATGCAAGTCCCATTTGGTTTAAAGTAATACCAAAAATTGCAGACTTCTTCTCTCCAATTTCTCTGAATTTCGATACTGCAGTTTTCAGGGAATCGTACGAGTCCATATAATCCCCCAGAATATAGTACAAGACCCCAATCTGGGCTTCAATTCCTGCAATAGTGCTCTGTTGTCCTGGTGCATTTCCATACACTTTTATGGCCTTCTGAAGCAACTTGAGCGCCTGATCAGGTTCGTTCATCGACTCATAGATCACAGATACATCGACAAGACCACTTGCAATCTCTTCTGGATGGCTTCCAGGGACGGCCTTAGTATAAATCCGAAGTGCATTTTCACA</genome_strand>
        <mrna_strand>ATCGTAGTTCCTCAAATGGATAGAGTATGTGTTGATATGCATTTCTTGGCGAACAAGCCCATATTATTAGTGCATCAATTGTTGAATGGTTGTGTATATACAAAACAACGCTTAAAACTAGGGTGCAAGCAATATAGTTGGGAGTCTAACACTGCTGCCTAA..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAG...........................................................................................................................................................................................................................................................................GGGGGGGGCCG-GGCCCCCT-TTCCCCCTTT........................................................................................................................................................................................GGGGGGGTTTTTAAAAATTTCGGGGGGGGTTTTTAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0236E02-u8qcS/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E334690" ref_strand="+" ref_description="SGN-E334690 [cTOD-23-D10]">
      <seq>ttcttcatggaattgaatcataccaagcagactctgcaaacggctatggagaatgaacagcagcatctctccctctctgaatcagattctactgattctgaacctgagaaagctattactttctcctccccagctcgttttcatagcggctccgattctgatcattccactaagttccaaacagataaagctactaatccctctaccgtcaatggcgattctactaaggcgcaatctcagccgaggtcatcaatttcctccgattcagatgattttagtaagtgtggagaacataaagttagtaagattgattctactactgctactgttaatagagattctacagctactaaagtatcttcaccgccggtggaatctccgccgaggtcgtcaatttcctctgatcaaatttctcttcctcatgagtccttaaatatggaggatactaagccttctgcagctccgacggggagtccgccggaaaaacctccaataccggaagcggtggtgaagaagtttatcaaggaggagccactggctttggtgaaagcggatctgtttgtcggagatggtacagctagtattaaggaaggtgaagacagcggcaaccgtcggcag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0236E02-u8qcS/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0236E02.1" temp_strand="-" temp_description="C02HBa0236E02.1  AC215430.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0236E02 sequenced_by:kribb upload_account_name:korea">
        <position start="47156" stop="45939"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="46856" g_stop="46239" g_length="618"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="618" r_length="618" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0236E02.1" gen_strand="-" ref_id="SGN-E334690" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>618</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0236E02.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E334690" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="46856" e_stop="46239"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTCTTCATGGAATTGAATCATACCAAGCAGACTCTGCAAACGGCTATGGAGAATGAACAGCAGCATCTCTCCCTCTCTGAATCAGATTCTACTGATTCTGAACCTGAGAAAGCTATTACTTTCTCCTCCCCAGCTCGTTTTCATAGCGGCTCCGATTCTGATCATTCCACTAAGTTCCAAACAGATAAAGCTACTAATCCCTCTACCGTCAATGGCGATTCTACTAAGGCGCAATCTCAGCCGAGGTCATCAATTTCCTCCGATTCAGATGATTTTAGTAAGTGTGGAGAACATAAAGTTAGTAAGATTGATTCTACTACTGCTACTGTTAATAGAGATTCTACAGCTACTAAAGTATCTTCACCGCCGGTGGAATCTCCGCCGAGGTCGTCAATTTCCTCTGATCAAATTTCTCTTCCTCATGAGTCCTTAAATATGGAGGATACTAAGCCTTCTGCAGCTCCGACGGGGAGTCCGCCGGAAAAACCTCCAATACCGGAAGCGGTGGTGAAGAAGTTTATCAAGGAGGAGCCACTGGCTTTGGTGAAAGCGGATCTGTTTGTCGGAGATGGTACAGCTAGTATTAAGGAAGGTGAAGACAGCGGCAACCGTCGGCAG</genome_strand>
        <mrna_strand>TTCTTCATGGAATTGAATCATACCAAGCAGACTCTGCAAACGGCTATGGAGAATGAACAGCAGCATCTCTCCCTCTCTGAATCAGATTCTACTGATTCTGAACCTGAGAAAGCTATTACTTTCTCCTCCCCAGCTCGTTTTCATAGCGGCTCCGATTCTGATCATTCCACTAAGTTCCAAACAGATAAAGCTACTAATCCCTCTACCGTCAATGGCGATTCTACTAAGGCGCAATCTCAGCCGAGGTCATCAATTTCCTCCGATTCAGATGATTTTAGTAAGTGTGGAGAACATAAAGTTAGTAAGATTGATTCTACTACTGCTACTGTTAATAGAGATTCTACAGCTACTAAAGTATCTTCACCGCCGGTGGAATCTCCGCCGAGGTCGTCAATTTCCTCTGATCAAATTTCTCTTCCTCATGAGTCCTTAAATATGGAGGATACTAAGCCTTCTGCAGCTCCGACGGGGAGTCCGCCGGAAAAACCTCCAATACCGGAAGCGGTGGTGAAGAAGTTTATCAAGGAGGAGCCACTGGCTTTGGTGAAAGCGGATCTGTTTGTCGGAGATGGTACAGCTAGTATTAAGGAAGGTGAAGACAGCGGCAACCGTCGGCAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0236E02-u8qcS/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E728818" ref_strand="+" ref_description="SGN-E728818 [LA19AC01]">
      <seq>cccaatccctttttgtagcagcagtgttctgtttcttgcttcatggaattgaatcataccaagcagactctgcaaacggctatggagaatgaacagcagcatctctccctctctgaatcagattctactgattctgaacctgagaaagctattactttctcctccccagctcgttttcatagcggctccgattctgatcattccactaagttccaaacagataaagctactaatccctctaccgtcaatggcgattctactaaggcgcaatctcagccgaggtcatcaatttcctccgattcagatgattttagtaagtgtggagaacataaagttagtaagattgattctactactgctactgttaatagagattctacagctactaaagtatcttcaccgccggtggaatctccgccgaggtcgtcaatttcctctgatcaaatttctcttcctcatgagtccttaaatatggaggatactaagccttctgcagctccgacggggagtccgccggaaaaacctccaataccggaagcggtggtgaagaagtttatcaaggaggagccactggctttggtgaaagtggatctgtttgtcggacatggtacagctagtattaaggaaggtgattacagcggcaac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0236E02-u8qcS/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0236E02.1" temp_strand="-" temp_description="C02HBa0236E02.1  AC215430.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0236E02 sequenced_by:kribb upload_account_name:korea">
        <position start="47192" stop="45948"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="46892" g_stop="46248" g_length="645"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="645" r_length="645" r_score="0.989"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0236E02.1" gen_strand="-" ref_id="SGN-E728818" ref_strand="+">
        <total_alignment_score>0.989</total_alignment_score>
        <cumulative_length_of_scored_exons>645</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0236E02.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E728818" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="46892" e_stop="46248"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCCAATCCCATTTTTGTAGCAGCAGTGTTCTGTTTCTT-CTTCATGGAATTGAATCATACCAAGCAGACTCTGCAAACGGCTATGGAGAATGAACAGCAGCATCTCTCCCTCTCTGAATCAGATTCTACTGATTCTGAACCTGAGAAAGCTATTACTTTCTCCTCCCCAGCTCGTTTTCATAGCGGCTCCGATTCTGATCATTCCACTAAGTTCCAAACAGATAAAGCTACTAATCCCTCTACCGTCAATGGCGATTCTACTAAGGCGCAATCTCAGCCGAGGTCATCAATTTCCTCCGATTCAGATGATTTTAGTAAGTGTGGAGAACATAAAGTTAGTAAGATTGATTCTACTACTGCTACTGTTAATAGAGATTCTACAGCTACTAAAGTATCTTCACCGCCGGTGGAATCTCCGCCGAGGTCGTCAATTTCCTCTGATCAAATTTCTCTTCCTCATGAGTCCTTAAATATGGAGGATACTAAGCCTTCTGCAGCTCCGACGGGGAGTCCGCCGGAAAAACCTCCAATACCGGAAGCGGTGGTGAAGAAGTTTATCAAGGAGGAGCCACTGGCTTTGGTGAAAGCGGATCTGTTTGTCGGAGATGGTACAGCTAGTATTAAGGAAGGTGAAGACAGCGGCAAC</genome_strand>
        <mrna_strand>CCCAATCCC-TTTTTGTAGCAGCAGTGTTCTGTTTCTTGCTTCATGGAATTGAATCATACCAAGCAGACTCTGCAAACGGCTATGGAGAATGAACAGCAGCATCTCTCCCTCTCTGAATCAGATTCTACTGATTCTGAACCTGAGAAAGCTATTACTTTCTCCTCCCCAGCTCGTTTTCATAGCGGCTCCGATTCTGATCATTCCACTAAGTTCCAAACAGATAAAGCTACTAATCCCTCTACCGTCAATGGCGATTCTACTAAGGCGCAATCTCAGCCGAGGTCATCAATTTCCTCCGATTCAGATGATTTTAGTAAGTGTGGAGAACATAAAGTTAGTAAGATTGATTCTACTACTGCTACTGTTAATAGAGATTCTACAGCTACTAAAGTATCTTCACCGCCGGTGGAATCTCCGCCGAGGTCGTCAATTTCCTCTGATCAAATTTCTCTTCCTCATGAGTCCTTAAATATGGAGGATACTAAGCCTTCTGCAGCTCCGACGGGGAGTCCGCCGGAAAAACCTCCAATACCGGAAGCGGTGGTGAAGAAGTTTATCAAGGAGGAGCCACTGGCTTTGGTGAAAGTGGATCTGTTTGTCGGACATGGTACAGCTAGTATTAAGGAAGGTGATTACAGCGGCAAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0236E02-u8qcS/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E345006" ref_strand="+" ref_description="SGN-E345006 [cTOF-22-H21]">
      <seq>ccaaaactatcattatcgcagagacctcatctttcaacttccattcattattctattttccgtttcactccattttcatacacccaatcccatttttgtagcagcagtgttctgtttcttcttcatggaattgaatcataccaagcagactctgcaaacggctatggagaatgaacagcagcatctctccctctctgaatcagattctactgattctgaacctgagaaagctattactttctcctccccagctcgttttcatagcggctccgattctgatcattccactaagttccaaacagataaagctactaatccctctaccgtcaatggcgattctactaaggcgcaatctcagccgaggtcatcaatttcctccgattcagatgattttagtaagtgtggagaacataaagttagtaagattgattctactactgctactgttaatagagattctacagctactaaagtatcttcaccgccggtggaatctccgccgaggtcgtcaatttcctctgatcaaatttctcttcctcatgagtccttaaatatggaggatactaagccttctgcagctccgacggggagtccgccggaaaaacctccaataccggaagcggtggtgaagaagtttatcaaggaggagccactggctttggtgaaagcggatctgtttgtcgg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0236E02-u8qcS/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0236E02.1" temp_strand="-" temp_description="C02HBa0236E02.1  AC215430.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0236E02 sequenced_by:kribb upload_account_name:korea">
        <position start="47274" stop="45991"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="46974" g_stop="46291" g_length="684"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="684" r_length="684" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0236E02.1" gen_strand="-" ref_id="SGN-E345006" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>684</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0236E02.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E345006" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="46974" e_stop="46291"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCAAAACTATCATTATCGCAGAGACCTCATCTTTCAACTTCCATTCATTATTCTATTTTCCGTTTCACTCCATTTTCATACACCCAATCCCATTTTTGTAGCAGCAGTGTTCTGTTTCTTCTTCATGGAATTGAATCATACCAAGCAGACTCTGCAAACGGCTATGGAGAATGAACAGCAGCATCTCTCCCTCTCTGAATCAGATTCTACTGATTCTGAACCTGAGAAAGCTATTACTTTCTCCTCCCCAGCTCGTTTTCATAGCGGCTCCGATTCTGATCATTCCACTAAGTTCCAAACAGATAAAGCTACTAATCCCTCTACCGTCAATGGCGATTCTACTAAGGCGCAATCTCAGCCGAGGTCATCAATTTCCTCCGATTCAGATGATTTTAGTAAGTGTGGAGAACATAAAGTTAGTAAGATTGATTCTACTACTGCTACTGTTAATAGAGATTCTACAGCTACTAAAGTATCTTCACCGCCGGTGGAATCTCCGCCGAGGTCGTCAATTTCCTCTGATCAAATTTCTCTTCCTCATGAGTCCTTAAATATGGAGGATACTAAGCCTTCTGCAGCTCCGACGGGGAGTCCGCCGGAAAAACCTCCAATACCGGAAGCGGTGGTGAAGAAGTTTATCAAGGAGGAGCCACTGGCTTTGGTGAAAGCGGATCTGTTTGTCGG</genome_strand>
        <mrna_strand>CCAAAACTATCATTATCGCAGAGACCTCATCTTTCAACTTCCATTCATTATTCTATTTTCCGTTTCACTCCATTTTCATACACCCAATCCCATTTTTGTAGCAGCAGTGTTCTGTTTCTTCTTCATGGAATTGAATCATACCAAGCAGACTCTGCAAACGGCTATGGAGAATGAACAGCAGCATCTCTCCCTCTCTGAATCAGATTCTACTGATTCTGAACCTGAGAAAGCTATTACTTTCTCCTCCCCAGCTCGTTTTCATAGCGGCTCCGATTCTGATCATTCCACTAAGTTCCAAACAGATAAAGCTACTAATCCCTCTACCGTCAATGGCGATTCTACTAAGGCGCAATCTCAGCCGAGGTCATCAATTTCCTCCGATTCAGATGATTTTAGTAAGTGTGGAGAACATAAAGTTAGTAAGATTGATTCTACTACTGCTACTGTTAATAGAGATTCTACAGCTACTAAAGTATCTTCACCGCCGGTGGAATCTCCGCCGAGGTCGTCAATTTCCTCTGATCAAATTTCTCTTCCTCATGAGTCCTTAAATATGGAGGATACTAAGCCTTCTGCAGCTCCGACGGGGAGTCCGCCGGAAAAACCTCCAATACCGGAAGCGGTGGTGAAGAAGTTTATCAAGGAGGAGCCACTGGCTTTGGTGAAAGCGGATCTGTTTGTCGG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0236E02-u8qcS/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E314807" ref_strand="+" ref_description="SGN-E314807 [cTOA-20-L23]">
      <seq>gaaagtggaaaccgccaaaactatcattatcgcagagacctcatctttcaacttccattcattattctattttccgtttcactccattttcatacacccaatcccatttttgtagcagcagtgttctgtttcttcttcatggaattgaatcataccaagcagactctgcaaacggctatggagaatgaacagcagcatctctccctctctgaatcagattctactgattctgaacctgagaaagctattactttctcctccccagctcgttttcatagcggctccgattctgatcattccactaagttccaaacagataaagctactaatccctctaccgtcaatggcgattctactaaggcgcaatctcagccgaggtcatcaatttcctccgattcagatgattttagtaagtgtggagaacataaagttagtaagattgattctactactgctactgttaatagagattctacagctactaaagtatcttcaccgccggtggaatctccgccgaggtcgtcaatttcctctgatcaaatttctcttcctcatgagtccttaaatatggaggatactaagccttctgcagctccgacggggagtccgccggaaaaacctccaataccggaagcg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0236E02-u8qcS/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0236E02.1" temp_strand="-" temp_description="C02HBa0236E02.1  AC215430.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0236E02 sequenced_by:kribb upload_account_name:korea">
        <position start="47288" stop="46053"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="46988" g_stop="46353" g_length="636"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="636" r_length="636" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0236E02.1" gen_strand="-" ref_id="SGN-E314807" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>636</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0236E02.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E314807" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="46988" e_stop="46353"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAAAGTGGAAACCGCCAAAACTATCATTATCGCAGAGACCTCATCTTTCAACTTCCATTCATTATTCTATTTTCCGTTTCACTCCATTTTCATACACCCAATCCCATTTTTGTAGCAGCAGTGTTCTGTTTCTTCTTCATGGAATTGAATCATACCAAGCAGACTCTGCAAACGGCTATGGAGAATGAACAGCAGCATCTCTCCCTCTCTGAATCAGATTCTACTGATTCTGAACCTGAGAAAGCTATTACTTTCTCCTCCCCAGCTCGTTTTCATAGCGGCTCCGATTCTGATCATTCCACTAAGTTCCAAACAGATAAAGCTACTAATCCCTCTACCGTCAATGGCGATTCTACTAAGGCGCAATCTCAGCCGAGGTCATCAATTTCCTCCGATTCAGATGATTTTAGTAAGTGTGGAGAACATAAAGTTAGTAAGATTGATTCTACTACTGCTACTGTTAATAGAGATTCTACAGCTACTAAAGTATCTTCACCGCCGGTGGAATCTCCGCCGAGGTCGTCAATTTCCTCTGATCAAATTTCTCTTCCTCATGAGTCCTTAAATATGGAGGATACTAAGCCTTCTGCAGCTCCGACGGGGAGTCCGCCGGAAAAACCTCCAATACCGGAAGCG</genome_strand>
        <mrna_strand>GAAAGTGGAAACCGCCAAAACTATCATTATCGCAGAGACCTCATCTTTCAACTTCCATTCATTATTCTATTTTCCGTTTCACTCCATTTTCATACACCCAATCCCATTTTTGTAGCAGCAGTGTTCTGTTTCTTCTTCATGGAATTGAATCATACCAAGCAGACTCTGCAAACGGCTATGGAGAATGAACAGCAGCATCTCTCCCTCTCTGAATCAGATTCTACTGATTCTGAACCTGAGAAAGCTATTACTTTCTCCTCCCCAGCTCGTTTTCATAGCGGCTCCGATTCTGATCATTCCACTAAGTTCCAAACAGATAAAGCTACTAATCCCTCTACCGTCAATGGCGATTCTACTAAGGCGCAATCTCAGCCGAGGTCATCAATTTCCTCCGATTCAGATGATTTTAGTAAGTGTGGAGAACATAAAGTTAGTAAGATTGATTCTACTACTGCTACTGTTAATAGAGATTCTACAGCTACTAAAGTATCTTCACCGCCGGTGGAATCTCCGCCGAGGTCGTCAATTTCCTCTGATCAAATTTCTCTTCCTCATGAGTCCTTAAATATGGAGGATACTAAGCCTTCTGCAGCTCCGACGGGGAGTCCGCCGGAAAAACCTCCAATACCGGAAGCG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0236E02-u8qcS/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E307417" ref_strand="+" ref_description="SGN-E307417 [cLEY-12-K18]">
      <seq>gactctgcaaacggctatggagaatgaacagcagcatctctccctctctgaatcagattctactgattctgaacctgagaaagctattactttctcctccccagctcgttttcatagcggctccgattctgatcattccactaagttccaaacagataaagctactaatccctctaccgtcaatggcgattctactaaggcgcaatctcagccgatgtcatcaatttcctccgattcagatgattgtagtaagtgtggagaacataaagttagtaagattgattctactactgctactgttaatagagattctacagctactaaaggatcttcaccgccggtggaatctccgccgaggtcgtcaatttcctctgatcaaatatctctgcctcatgagtccttaaatatggaggatac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0236E02-u8qcS/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0236E02.1" temp_strand="-" temp_description="C02HBa0236E02.1  AC215430.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0236E02 sequenced_by:kribb upload_account_name:korea">
        <position start="47127" stop="46111"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="46827" g_stop="46411" g_length="417"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="417" r_length="417" r_score="0.988"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0236E02.1" gen_strand="-" ref_id="SGN-E307417" ref_strand="+">
        <total_alignment_score>0.988</total_alignment_score>
        <cumulative_length_of_scored_exons>417</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0236E02.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E307417" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="46827" e_stop="46411"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GACTCTGCAAACGGCTATGGAGAATGAACAGCAGCATCTCTCCCTCTCTGAATCAGATTCTACTGATTCTGAACCTGAGAAAGCTATTACTTTCTCCTCCCCAGCTCGTTTTCATAGCGGCTCCGATTCTGATCATTCCACTAAGTTCCAAACAGATAAAGCTACTAATCCCTCTACCGTCAATGGCGATTCTACTAAGGCGCAATCTCAGCCGAGGTCATCAATTTCCTCCGATTCAGATGATTTTAGTAAGTGTGGAGAACATAAAGTTAGTAAGATTGATTCTACTACTGCTACTGTTAATAGAGATTCTACAGCTACTAAAGTATCTTCACCGCCGGTGGAATCTCCGCCGAGGTCGTCAATTTCCTCTGATCAAATTTCTCTTCCTCATGAGTCCTTAAATATGGAGGATAC</genome_strand>
        <mrna_strand>GACTCTGCAAACGGCTATGGAGAATGAACAGCAGCATCTCTCCCTCTCTGAATCAGATTCTACTGATTCTGAACCTGAGAAAGCTATTACTTTCTCCTCCCCAGCTCGTTTTCATAGCGGCTCCGATTCTGATCATTCCACTAAGTTCCAAACAGATAAAGCTACTAATCCCTCTACCGTCAATGGCGATTCTACTAAGGCGCAATCTCAGCCGATGTCATCAATTTCCTCCGATTCAGATGATTGTAGTAAGTGTGGAGAACATAAAGTTAGTAAGATTGATTCTACTACTGCTACTGTTAATAGAGATTCTACAGCTACTAAAGGATCTTCACCGCCGGTGGAATCTCCGCCGAGGTCGTCAATTTCCTCTGATCAAATATCTCTGCCTCATGAGTCCTTAAATATGGAGGATAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0236E02-u8qcS/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E744923" ref_strand="+" ref_description="SGN-E744923 [GI|1815667]">
      <seq>gtaaacgagcgttgatttgtcgctgacgaaatttacagtcaagagtagtaaccggttgtagtgaaaaaatggagtcgaggaaagtgacgaagacgctggaagatcaatgggtggtggagcgtcgagtccgagagatatacgattatttctacagcatttcccccaactctccgtccgacctcatagagatcgaacgtgacaaacacttcggttatctaagccaaggtctcagaaaacttggtccgtcgttttccgttttggatgccagtcgaccatggctttgctactggacacttcattcaatcgctttgttgggagaatctattggtggcaaactggaaaatgatgcaattgactttctgacccgttgccaggataaagatggtggctatggaggtggacctggtcagatgcctcatcttgcaactacttatgctgcagtcaattcactaataactttgggcaaacctgaagctctgtcatcaattaatagagaaaagttgtacacatttttgctgcgaatgaaagacgcaagtggtggattcaggatgcacgatggtggagaagtagatgttcgtgcctgttatactgccatttctgttgcaaatatattaaacattgtggatgacgagctgattcatggtgttggaaattacatcctaagttgtcagacttatgaaggtggaattgctggcgaaccaggttctgaagctcatggtgggtatactttctgtgggttggctgcaatgattctgatcaacgaagtagatcgattggacttgccaggtttaattgattgggtggtatttagacaaggggtcgaaggtggatttcaaggcaggacaaataaattagtcgatggctgctattccttttggcagggcgcggtagtgtttcttatacaaagactaaatttgatagtccatgaacaactagggctgtcaaatgacctcagtacagaaagtgctgatgattcttcagagtcagagttatctgatgaagaagagcatttggaagggatatcctctcatgttcaggatactttccctcttggacaagcaggtgcttgtcaagaaaatgcttctcatagcccaaaaatagcagatactggatatgagtttatcaaccgacccatagctatgaggcctctctttgacagcatgtatctgcagcaatatgttcttctttgctctcagattgaagttggtggtttcagagacaaacctgggaagggtagagactactaccatacctgttactgtttaagtggtctttcaattgctcagtatagctggaccgacgaagctgattctacaccattacccagggatgtatttggtccttattccaaatgtctgttggaacaggttcacccactcttcaacgtagtgttggatcggtattatgaagctcgcgaatactctcaggcttgtgagactgtttcaccactttcattagcaccaactttttcagaaacttagttgcaatccagaagttaaaagtgtcattgggttcaaaagagttgtgatcgtttatgtacatatccttgcatttgtatacgtgatacaagttgagagaataacgggtactttctgaacttgctgaactagcacgtaaattcgtctctggtttagtgaggtctgtaaacatcaatgtgaaattgcgagatatgcatgtaatagtggctaagatttacaaatctggataccggttattagtgatcagaaatttcattcaatttcccaaacggtcacctaagtttaggatattgctttaaaatattatttatttttcatttaagaatcaaaaaaaaaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0236E02-u8qcS/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0236E02.1" temp_strand="-" temp_description="C02HBa0236E02.1  AC215430.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0236E02 sequenced_by:kribb upload_account_name:korea">
        <position start="59897" stop="47219"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="59597" g_stop="59417" g_length="181"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="181" r_length="181" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="59416" i_stop="59314" i_length="103">
            <donor d_prob="0.960" d_score="1.00"/>
            <acceptor a_prob="0.965" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="59313" g_stop="59227" g_length="87"/>
          <reference_exon_boundary r_type="cDNA" r_start="182" r_stop="268" r_length="87" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="59226" i_stop="58046" i_length="1181">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.593" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="58045" g_stop="57940" g_length="106"/>
          <reference_exon_boundary r_type="cDNA" r_start="269" r_stop="374" r_length="106" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="57939" i_stop="56816" i_length="1124">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="56815" g_stop="56780" g_length="36"/>
          <reference_exon_boundary r_type="cDNA" r_start="375" r_stop="410" r_length="36" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="56779" i_stop="56141" i_length="639">
            <donor d_prob="0.894" d_score="0.00"/>
            <acceptor a_prob="0.975" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="56140" g_stop="56058" g_length="83"/>
          <reference_exon_boundary r_type="cDNA" r_start="411" r_stop="493" r_length="83" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="56057" i_stop="55977" i_length="81">
            <donor d_prob="0.533" d_score="1.00"/>
            <acceptor a_prob="0.738" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="55976" g_stop="55923" g_length="54"/>
          <reference_exon_boundary r_type="cDNA" r_start="494" r_stop="547" r_length="54" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="55922" i_stop="55438" i_length="485">
            <donor d_prob="0.993" d_score="1.00"/>
            <acceptor a_prob="0.981" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="55437" g_stop="55386" g_length="52"/>
          <reference_exon_boundary r_type="cDNA" r_start="548" r_stop="599" r_length="52" r_score="1.000"/>
        </exon>
        <intron i_serial="7">
          <gDNA_intron_boundary i_start="55385" i_stop="54759" i_length="627">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.984" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="8">
          <gDNA_exon_boundary g_start="54758" g_stop="54694" g_length="65"/>
          <reference_exon_boundary r_type="cDNA" r_start="600" r_stop="664" r_length="65" r_score="1.000"/>
        </exon>
        <intron i_serial="8">
          <gDNA_intron_boundary i_start="54693" i_stop="53379" i_length="1315">
            <donor d_prob="0.496" d_score="1.00"/>
            <acceptor a_prob="0.987" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="9">
          <gDNA_exon_boundary g_start="53378" g_stop="53322" g_length="57"/>
          <reference_exon_boundary r_type="cDNA" r_start="665" r_stop="721" r_length="57" r_score="1.000"/>
        </exon>
        <intron i_serial="9">
          <gDNA_intron_boundary i_start="53321" i_stop="53172" i_length="150">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.962" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="10">
          <gDNA_exon_boundary g_start="53171" g_stop="53099" g_length="73"/>
          <reference_exon_boundary r_type="cDNA" r_start="722" r_stop="794" r_length="73" r_score="0.973"/>
        </exon>
        <intron i_serial="10">
          <gDNA_intron_boundary i_start="53098" i_stop="49928" i_length="3171">
            <donor d_prob="0.521" d_score="0.96"/>
            <acceptor a_prob="0.989" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="11">
          <gDNA_exon_boundary g_start="49927" g_stop="49841" g_length="87"/>
          <reference_exon_boundary r_type="cDNA" r_start="795" r_stop="881" r_length="87" r_score="1.000"/>
        </exon>
        <intron i_serial="11">
          <gDNA_intron_boundary i_start="49840" i_stop="49755" i_length="86">
            <donor d_prob="0.992" d_score="1.00"/>
            <acceptor a_prob="0.919" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="12">
          <gDNA_exon_boundary g_start="49754" g_stop="49574" g_length="181"/>
          <reference_exon_boundary r_type="cDNA" r_start="882" r_stop="1062" r_length="181" r_score="1.000"/>
        </exon>
        <intron i_serial="12">
          <gDNA_intron_boundary i_start="49573" i_stop="49015" i_length="559">
            <donor d_prob="0.776" d_score="1.00"/>
            <acceptor a_prob="0.985" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="13">
          <gDNA_exon_boundary g_start="49014" g_stop="48881" g_length="134"/>
          <reference_exon_boundary r_type="cDNA" r_start="1063" r_stop="1196" r_length="134" r_score="1.000"/>
        </exon>
        <intron i_serial="13">
          <gDNA_intron_boundary i_start="48880" i_stop="48133" i_length="748">
            <donor d_prob="0.816" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="14">
          <gDNA_exon_boundary g_start="48132" g_stop="47522" g_length="611"/>
          <reference_exon_boundary r_type="cDNA" r_start="1197" r_stop="1808" r_length="612" r_score="0.985"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="1809" polyA_stop="1832"/>
      <MATCH_line gen_id="C02HBa0236E02.1" gen_strand="-" ref_id="SGN-E744923" ref_strand="+">
        <total_alignment_score>0.994</total_alignment_score>
        <cumulative_length_of_scored_exons>1807</cumulative_length_of_scored_exons>
        <coverage percentage="0.986" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0236E02.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E744923" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="59597" e_stop="59417"/>
          <exon e_start="59313" e_stop="59227"/>
          <exon e_start="58045" e_stop="57940"/>
          <exon e_start="56815" e_stop="56780"/>
          <exon e_start="56140" e_stop="56058"/>
          <exon e_start="55976" e_stop="55923"/>
          <exon e_start="55437" e_stop="55386"/>
          <exon e_start="54758" e_stop="54694"/>
          <exon e_start="53378" e_stop="53322"/>
          <exon e_start="53171" e_stop="53099"/>
          <exon e_start="49927" e_stop="49841"/>
          <exon e_start="49754" e_stop="49574"/>
          <exon e_start="49014" e_stop="48881"/>
          <exon e_start="48132" e_stop="47522"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTAAACGAGCGTTGATTTGTCGCTGACGAAATTTACAGTCAAGAGTAGTAACCGGTTGTAGTGAAAAAATGGAGTCGAGGAAAGTGACGAAGACGCTGGAAGATCAATGGGTGGTGGAGCGTCGAGTCCGAGAGATATACGATTATTTCTACAGCATTTCCCCCAACTCTCCGTCCGACCTGTTAGCTCTCAACCTTTTTCAATTTCTAGGGTTCTTATTCCTTTATTCATCAACTTATTTTTGTGTTGATTTCTTTCTTTCTTTCTTTCTTTCTGTTATAAAGCATAGAGATCGAACGTGACAAACACTTCGGTTATCTAAGCCAAGGTCTCAGAAAACTTGGTCCGTCGTTTTCCGTTTTGGATGCCAGGTAAGTTCCCTCTATCTTTGATCGTTTCTCACCACTAGTTCACTTGTGATGTTGAAGATTCCAATTTTAACTGGTGGCTAATTGGAAAACAAAATTAAAATTTCGTATTATGAATTCAATGTGCTTTAAAAGGAAAATTATTTAGTATTGGAATGGAATTGACTTGAATGAAGTAATGTCTTAGTTAATATAACTTTATATAGCTGATCTCAACTTATTTGGGAGCTAGTCTATTGATTGATTGAGTGACTTTTTAGGAAGAAAAGAACATTGTTTGCAAGATTCAATCGTAATGAGAGAGTTGAGATTCTATGGTAACGAGAGGAAAGAACTAAACAAGCTAACGTGGATGAATATTGACCTTCAAATAAACTCTCTCCAAGCATCCACCCAAGAGTGCAGTCTAGTGGTTAATGAACTAGGTCGAGAATCACGAGGTCTCAAATTCAAAGGCAAAAGGTTAGGTGAGTTCTTCCCAAGTTCTTATACTGTCCATGTATTGAGGGACAGAGTTACCCACTATCTATGCTAGTGGGAGGTAGGACGTACCACGTGGAAATAATCGAGTTGAGCACTCCATAGTTACAAAAAATAAAAATAAAGCTCTCTCCAATGATTAGTTACATACAACATATTTGGATTGGTATAAGTTTCATAATGACTAATCTTGTCAGTGTAGGACACACTAAGGTTTTCTTCTTTTCCATTTTCTCGTGGGGGATCACAATGTTGTCCAACCAACTTGCTCATACCTCGACTAATGGATTGAAACATGCTATCTCTCACTAGCACATGTGCTATCTACCATGGGGTTTGGAACTTTGGTGTATCAGGTTCATCTGAACCCAATAAAATTCAATGTTGGGCATAAATCTGTGTGTAAATTTTTCATGGAATTACAATAAATAGTATATATGAAAGCATAAATTTTATAAATATAATGGGTTCAACAATAAAACTTGAGGGGAAGAATTCTGTGGTCTCCCATTCCCAATGTCCATTCAAACTTCATTAAGTCATGCCCTTTGGTTCCCTTTCCCATACCTCACCAACATAATATAAAAGTTTGGAAAATGTGTTCATCAAGATGGGATCTTGGCGTCTATTCTAGTCCAATGGAACCAAAGGCTATTTTGTTAACATCAACTATTTCTATGCCTTACTTAAGTTTTTCTTTCTAGTCGACCATGGCTTTGCTACTGGACACTTCATTCAATCGCTTTGTTGGGAGAATCTATTGGTGGCAAACTGGAAAATGATGCAATTGACTTTCTGACCCGTTGCCAGGTTTGTTCATTTTGTATTCTGCTGGTTATGTATCTATGTCTTTCTTTAAAAAGAATTGTGTAGGGATTTAGTGTATTTGTTTTTAGGGTGGGTTCAGAGCAAGCTAATAGGATCACTTTCACTGAGGAAAACTTATGTGTAATGAATCACCTTTTTTGTTTGTTTTAGGACCATACTGTGCTACAAGAGCATGATATATATAACAGCAGGCTTTTTTTTACATATTGAGCAGGAGTTTCTTGTGGTGATAAAAGTGAGTTTGAAGCATTAAACTTAGAGAAATTGTTTTACCTCCCAGATTTTGAAGTTAAAACCTGAAAATTTGAGTTTTTGAAATTGTGATTTTTGGAACTTGAAGTTGTGCTTATACATGCATATTACTTGGAAAATTTGAAACTTTTGTGAGTAAAAGTGAATTTCTCCCAAAACTGGTCTGGACCAGCTTTTGGAACTTGATATTTTTTTGAAGACAGATTTTCAAAATTTGATTGAATATCTATGGCCAAACAGATATTTTAAGACAAGTGTTCTAAGCAGAAAAGGCTACTACTAAAGTACATGCTATATTCTAAGTGCCCAGTTACGTCTTGCTTAGGGATGACAACTTTAATAGGCTTCAGCTACTGTACAAAACTCAAGTCTCTGTAGACTTCTCAAAGATATGGTAGACTTTATAACAAACTTCAAGAGGCTTTCCACCAAGGACTTTATTGTGGTTCTTATGAACTAAAATTGGGACTACTTGTATTCATCTCTGTACTATTGCTTAGACATTGTAATCATAAAGAGTTATAGACCAGTGCGCATGATTGATTGTGTTTAGGAGTGACTAATAATGATGCATGGAGAAAAGATTCCGTAGTGATATTCGAGCCTAGTTATAGAAATGTGATATACATGGTGAGTAGAATGTCATCCCAAATTATTGTTATTACCATATTTGCTTAAAAGATAATTTATTGTATTTATGATATGTTTAATCATCCACCTTTCCAGAATACTGGTGTAACTGTCCTTTTTTTTTTCTTGCCTGCGATTCTAGCTAATTTGTTTTTGGACTTCTCGTTCAATAAAATGCGGTAAGATTTAGTTTCATGTGTTGTTTACTGTTACCTTCCTCACAGGATAAAGATGGTGGCTATGGAGGTGGACCTGGTCAGGCAAGTCAAATTCTCCCACTCCAGTCTTAGTGCCGTTAAATCAGATTTGTGTCAGATTCTTCATGCTTATTTTCACATTGAGTTTGATTATCTGATGTCTTCAATTGTTTTTAATATGCAGTATGCTGCTTTATTTTGTGATGATGGTTGATTTGAATATTGTAAATTTGTTAACTCTATAATTCTGTTGGAGGACTTATAATTAAAAGATAATTCTATTAGAGGGAAATAGTCATCTGTATTGATATGCATTTAACTATTGGCATGGTCAGTGGTTTGAGCTTGGGACTTCCACGTTGGAGGTATCCAGTTCGAAACGGAAACGCCTTGCCAGCGAAAGCAAGGGGTTTGCCTTCTGGGTCGAGCTCGCATGGTGCGAGTTACCTCTCCTATGTAGTTTGCGAGCTATTGCATAGGAGCGGGGTTTTACCCTTGTCATTAAAAAAAAAAAGACTATTGGCCTGGTTCTTGTTCTTTTATAAGTTAGCTTGAAACTCTTTTTCTGTTTCTTTTAGAATCACAAATTTAACAGTTCCAAGCTTCGTTTATTCTGGTCAACCTGTTAATTTTATACAGTTCTTGTGCTTCTTATCATTAAGGTTCTTTGAAGTAATACTTGTATTGTATTGCTTTTTTCAGATGCCTCATCTTGCAACTACTTATGCTGCAGTCAATTCACTAATAACTTTGGGCAAACCTGAAGCTCTGTCATCAATTAATAGGTGCACAAGCTATAGTATGTTTTTGTTGGTGTCTTATCTATTGTTCATTCCTGTTGACATTGATCTAGTAATATGCCTCAGAGAAAAGTTGTACACATTTTTGCTGCGAATGAAAGACGCAAGTGGTGGATTCAGGTAGGATGCTTTCTACTTGTTTACATTATTTGATCAGCTCCCCAATTCATGTCTTCCCTTGTATCTCATTCCTAGTCTGCTGTATTTATCTACTATCAGTTTCTAAAAAAAATCTAGGTGCTTTTCTTTCTATTTGTAACTTGTTTATCCATTTTAAATTTGCCATCTCTATGTTGTATGTGCTAATGTTTTCCATTACTACTGATTCTCCTGATTAATCCTACCTGCTAATTTTGTTATGTTTTCCTTCTGAGGAGAACTAGACTTTTGGGTGAACTAGCACTGTAGTTGACACTTTTACCCTGATCTGTAAATGTATAAATATTTGTGTGTGTATTCTTGAGTTTGTAGATCCAAGTGTATTTAACGAACAGCATCTGAGAGATCACTTGTTTCTAGCATTTTCTTTCAATATTCAAGTTTCCTCAAAAATGACTTGCCACTTCCCATCTTTGCTAAGTTCAAACTTCAAATATTATCTGCAGGATGCACGATGGTGGAGAAGTAGATGTTCGTGCCTGTTATACTGCCATTTCTGTAAGTGTGATCTCCTTGTGATCTGAGTTCTGGTCATATTTTCATTATTTTGCTGCACTTGGATGGAAGACTCTGAGATAAGCTTTAAGCAAATATAATTTTCTTATTGATGAATCATGCAAGCTACGTATGTGAAACTTATCCTTCGGGGTGGCCTAGTGGCTTGGGCTTGGGACTTCCATGTTGGAGGTCTCAAGTTCGAAACCTTGCCAGCGAAAGTAAGGGGTTTTGCCTTCTTGTTTGAGCTTGTTGCACCGGGCTTGCCTAGTGCAGCTTACCTCTCTTATGTGGTTTGCGAGCTATTGCATAAGAGCGGGGGTTTTACCCTGTGCGCACCCAAAGGGTAGTGGTTGCGGGTTTCCCTTGTCATAAAAAAAATTAAAAATATGTGAAACTTAACCGTCTCTTTAGTTTTTTGAAAATAAATTAGATTCGAACATTTCCCGAATTTCATTCACGAGGCAATCAAAGCCTTCTGATACACGCCTCTCTTGCAAATCGTATAGATATTTTATACTTTATTACATACACATTTCTTGCATGTTACATTCTCAAGTTTGACGTTTTTCTTCTTAATTGTCTTTGGAATAATGTGCTTTCATGTTAATTGATACATTAGTTTCTTAGGTTGCAAATATATTAAACATTGTGGATGACGAGCTGATTCATGGTGTTGGAAATTACATCCTAAGGTTGGTTTGAGATGCGCACTCATCTGCTACAGCTTATTCAACTCTCTCTTTATGTATACCGTATTCATACTCAAGCTGTAATATCTCTTTTTGATTTACTAGTGTAGTTGTCTTCCAAGAGAAATTACACGAAATTAAAAGAGCATGGCAGAAATTTGGGAGTTTTAGAGGAGTGTAATCTGATAAAAAGATAACTATCAGAAAAGAAAGCAAGTTATATTACAAATGGTTGTGAGACTAGCGATAATACGTGAGTGATTGTTTTCTATAAAACCCAACATGTTCACTAGTTAACTGTCATGAATTATAGATGTTAATATGGATATTTGGTCATACAAGCTTGAAAATCAGATTGGAAATGCTCACCTCCAACAAAAGACGCAACAAGATAGCACGCATAGAGGATCATGAGTGAAGATTTGTCGAAATGGTTTAATTATGTTTACATTAACCTTCGAATATACCAGACTAGGTACAATACTGGAATAATTGAAGTTGCTATAAAGGCAACGAGGTAGATTCTAAATTACATGAAGAAAAACTGTTTAAAGACCTACAATCACCCAAAAGCCATTACATCAATTAGTTGAGATTAAGGAAAAGAAAAGAATTAGTTGTTGTTAAACTTACATTAGGTTGTGTTTGCCAGAGGTCCTTTTGTGTGGTAAGTTATATGTTTATGGCAGAGCAGGTGTGAGATTTTAAGAACTAATATATCTTAAAGGCAAAATATTGAGTATTGGGATGACACAAAGTAATGGATTTGGAGTATTCATATTACTGTCACCAACTAGTCAGTGCATGTTGACTAGTTAATTATACATACTAAATGCATGACCGAAGCTGGTACTTAAGTTGCATTGAAGGGTTTCTTTGAGATTCGATCCCATTGGTAAGAGAACAATTTTCCAAGTATCATTTCAGAACGATGTTATGTTTGAATATTCATGGCTCTGAGTTGATGACAGCCTCCATTTGTCAGGGATTAAAATATGAGAGATAAGTGATGTTTCCTAATTCTTGCCATCTGAGAAAGTTGAAAGTCCTTGAATAAAAATTGATGAAGGAACTATTCTTTTATTCTAGTTTGTTCTTATTCTTGTTCTCTGAAGTTCTTGATTTAATCCTAGTCTCATCATAAGAATTATTTAGCTAGGATAAATAAGAATTTATTCTATTTAGTGTCAGAAATACAAGATAAGAAGCAGGTGGCAGATCTTTCTTTTCCTTAATGTCCCTCATTTTTTGTTTGAAATATTAAGAATGTATTTTCATGGATAAGCCTTTCCTAAGCTGTTCTCCGTTTTTGCTTCAGTTGTCAGACTTATGAAGGTGGAATTGCTGGCGAACCAGGTTCTGAAGCTCATGGTGGGTAAGTCTCACGTTGGAGATATTCTCATCTTTCTAATCTTGTTTCGCTCTTTTTCTTATAGTTCTCTTTCAATGTTAGTTGCCGTAGTAGAACTATCACTTCTCAGCTTATGATGTTACTGAAGCCCTTTACATTTAACTCATTTTCTAGGTATACTTTCTGTGGGTTGGCTGCAATGATTCTGATCAACGAAGTGAATCGATTGGACTTGCCAGGTTTAATTGTAAGTTGCTTTAGGACTCTGTTGGGGACTGATGAGTGTTGCTAAGATAATCATGTGTGTGTACACTCTCTTTTTTTAGCATCAGAGTGACAGGACTATGGCATTCCTCTCACTGTCATGAAATGGGATATTATCATTTCTTTTTTGTTACTGGCCTTCATGACTGATTAAATGAAACTGAAACAAGATTGTTATAATAGTTGCATTTTAGTTTGTCTTCACAAATGTTCCACATTGCTTTTTTGTTGCTTATCATAAAATGTAAAGGAGAACAAAAAGAACGTAGACTCTTCTCTCAGAAAGTTACTCAACTTTCAATTTTCACTCAAAAGTCACTCAACTATGCACTTCTTTCCAGAAAGTCACTCAACTTTGAATTTTAATTCAAAAGTCACTCAACTATCCACTCTTTCCTCAAAAAGTCACTTAATCTATTAAATTGTTTTTTAATTAAAATTTATTGATATTAATTATTTATATAACAAACCAAAATTTTTAAAAAATAAAAATACCATTTAAAGATCCACCCACCTAACTCGACCCATTAAAAAATATGATATGATCTATTTTATTTTGTCTTTAATCCTAATTCAAGGTTTAAAGAGAGGGATTAATTTAGGATTAAAGACAAAATAAAATGGGTCATATTATATTTTTAATGGGTCGGGTTAGGTGGGTGGATCACTAAATGATTTAATTTATTTTTTAAAAATTTTGGTTTGTTATATAAATAATTAATATCAATAAATTTTAATTAAAAAACAATTTAATAGATTGAGTGACTTTTTGAGGAAAGAGTGGATTGTTGAGTGACTTTTTGAGGAAAGAGTGGATAGTTGAGTGACTTTTGAATTAAAATTCAAAGTTGAGTGACTTTCTGAGAAAGAAGTGCATAGTTGAGTGACTTTTGAGTGAAAATTGAAAGTTGAGTGACTTTCTGAGAGAAGAGTGCATAGTTGAGTGACCATCTGAGGTATTAACTCAGAACGTAGAGATGAGCTGAATCTCAGCTGGCAATTGAAGAACTGGAAAAACATTTTAGTGCTGTGATTACCGAGTACAGGAGATTATTCTAGTACTTAAGGTGATAAGCCATAATCCAAAAAAATAAATAAAATCATTGGTTTTATGATGGTAGGCTATTTTATTTTTACAGATACAACTTTTTGTTGGATATTTAGGAATCAAAAGTGAATAAATTGGAAATAACTTTGATGCACTAGAAAAGTTAGCATATGGGAAAAAGTGTATTAGATGATAAACAACTGGGAAATAACATGCAACATTTTGGTGGTTGTCCTTATTGGGGATGTTGGAGTATTATTTTTGAATGCTTTTTATTACCTTGTTGGAGTATTAAACTTTTGAATGCTTTTTATTACCTTGTGGTCCGACCCTTCCTTGGACCACGCTATGCGCAGGGAGCTTGGTGTTGGGTTCGAAAGTGATTAAGGCGTCATGTCGAAGTTTACAATTGCAAATCAAGATGTTGATAAATTAGATGACAAAAACTTATACTAAAAATTAAAATATTATTATATAGAATTTGGTCAATTGACCTACATATTAAAAACTAATTTAAAACATTAAAATTGTTTAGAAAAAATCTCCCCATAATCCTTCGAGGTGGCCCAGTGGTTTGAGCTTGGGAGTTTCATGTTAGAGGTCTCAAGCTCGAAACCCCTTGCCAGCGAAAGCAAGGGGTTTACCTTCCGGGCCGAGCTCGTCGCACCAGGCTTGCCTAGTGCGGGTTACCTCTCCCATGTGGTTTGCGAGATATTGCATAGAAGCGGGATTTTAACCCCGTGTGCACCCAAAGGGTAGCGGCTGCAGGTTTCCCTTGTCATAAAAATAAAATACAATCTCTCCATAAAGAAAAGTCTCTAAAACGAGTACATTGTGGATTCTATTGTTGTTTTGTGATGACTTATGAGAATAGGGATTTTCAATATATAATCTCCTAACTTTTTCTTTAACGAAAAAATAAACCAAATATGAAAAAAAAATATTTTCCTTTCATGAAAAGTAAAAACATTTGAAGTACTGTTTTGTCTCTTCTTTTAGAAAAAAAGGGAAAAATATTAAAATATACCCCCGAACTATCGTAAATGGTATGCAAATATCCTCCGTCATACTTTTGGGACATTGGTGCCCCTGTCTTCCATAAACTAGAACATATATGCCCTTCACTCAGACACGTGGTCCAATCTTATTCGTCGATAAATATTGTATCGGTGGATAAGATTATAACACGTGTGTGTCCGTTAGTATAAAGGGTATATATGCTCTATTTTTTGGACGACAGGGGCACCAATGTCCCAAAAGTATGATGGATGGTATTTGCATACCATTTACAATAGTTCGAGGGTATATCTGTCCTTTTCCCCTAAAAAAAATAAATTTCAGATAAGCTATGAAAATTAGAACAAAATCTTAACACTTACGGGTCGTTTGTTAGAGCATATAAAAATAATACCTAATAGATTGTGTTAGTAATGAAAGCATTAGTTATACTTGTATTAGTTATGCATTGTTTGGTTTGGTATATTAAAAATAGTGTGTATTATATAAAATATATATTTACAAAAGTAGCCTTCACAATTATGGTGGAAAAGATAACCATATTAATGCACGTATTAAATCCTTTGCATCACTAATACCAAGAAATCCATGCTATTAGTAATACACTCTTCAATACACAATAGAATAGTGTGTATAATTAGTCATACATAGCATGAAAAAATGCACTAAACAAGGTACTACTAATACATATAATTAATGCATGCATTATTTTTGCTAATACACCACCTTTTTATATGGTTAGGAGGATATCTAGGAACTCAGGAATGGCCTTCTGGCCTTTAATTTTGGTTTTGACGCTGGTTCATTTTGTAGAGCTGCACCAGGTTCTGTTGCTGCATTCCTGGGATTGTTGGGGGTAGATTATTAATGAACGTATTAGTTCCTTTTCCTTCCAAGTATCTTTCGTATAGTAGTACCTCTACATGACTTCCTCTTAGTCTCTTTACTTCTCTTAGCAGTTTCATTCTGTTGCTTTTTTAATAACTCTTCCCAAGTTGAGTTCTATCGAGTTGTTGAATTGATGTTACTTAAATCTGGATCATCTGACGGTATTGATGGAGATGATGTATTATGATTATGAATCTTTAGGATTGGGTGGTATTTAGACAAGGGGTCGAAGGTGGATTTCAAGGCAGGACAAATAAATTAGTCGATGGCTGCTATTCCTTTTGGCAGGTGACTACCAGTTTTACCTTTATGTCCTGAACTCTTCCATTTCCAGTTTAATTATTACTGAGCTAAAGATGACTTTGATTGATCAGGGCGCGGTAGTGTTTCTTATACAAAGACTAAATTTGATAGTCCATGAACAACTAGGGCTGTCAAATGACCTCAGTACAGAAAGTGCTGATGATTCTTCAGAGTCAGAGTTATCTGATGAAGAAGAGCATTTGGAAGGGATATCCTCTCATGTTCAGGATACTTTCCCTCTTGGACAAGCAGGTATGTCAATTTGAGGAACAATAGTTCAAAAGGCCAAAAAGAAAGTACCACTGTGTGATTCACTGGTCTGTTTGTTGCAGTGCTATTCAACTTTGTCCTTGGATCTGAATTAAATAGAGCATATCATGTTATAACGGAATCCAGTGGGTGGAATTTAATAAATGAAGGATGAAAAGAATATATTCCATCTTAAACCACTTCTCTTGTCACAGAAGTGGCACTTGGATTGTATATGAACTTGATATCTCCAGATGGTCAGGTAGTTAGTAACCTATAGTGCTATCAGCTGAACTTCACCTTAACTAGTTACCATATGTTGGATTCTTCAAACAATGTATGTGTAAAAGTTGGATTATCAAAATGGGTTGTATGTCCCTTACTCTGATCCATTTGTCCATTTGACGGTGTACCGAGATTGTTTAGTAGAGCATTTCATTGGAAGTTTGAAACTCTGACAGCTCCTAATATTTCTATCCAGATTCTTTGTGTTGTCTAGATCTTTCTTTCTTTTAGGTCTTATCACAATTACTTTCTAATCACATCATTTCATTTTTCTTAGGTGCTTGTCAAGAAAATGCTTCTCATAGCCCAAAAATAGCAGATACTGGATATGAGTTTATCAACCGACCCATAGCTATGAGGCCTCTCTTTGACAGCATGTATCTGCAGCAATATGTTCTTCTTTGCTCTCAGGTGCTTAAATTTTCGAGAAAATATATTCTGAAGATCCCTGTTCACTCTTGCATGTCCCTTGCTTTGGTGTAGGATTGTAATGCATATGCACAGCAGCACAAGCTGGAAAATAAGGGATGAAGAAAAAATCTCAAGAAAATTATAATCGTATAAGAAGCTAAGATTTTGTTTATAAAATTTGTAACATCACTGAAAATGCATATGAGAAACTGGTTTATTTGAGCTTCTAGGCCCTACATAGTTTAAAGAAATAAGTAAATTATATCGGGTTTCTCTCCTAATCTCGTCTGAAGATGGAATTGTTGTCTGATTTTGGAGCATCACTAAAACCACACCGTTCTTGTTAGAACATCTTGAATATCATTCATCTGCTGGGCATCATTATTTCTCCATTAACATATAAATTCAAGAGCCTTTAAAAGGCATGTGTATTTGATATAATGTTCTTTTTTGAATTTGTTGGCAACATGAAGTCGTGTACTAATCATCCTCTTAATTGGTGTTGGATTCAACAGCTTTATTTTGCATTCTTTTCATAATCAGAGTTCAATTTTCTTGTGTATAATTGGTAACTATTTATTCATTCTTCCAAGGGAAAAAGAAAGTTAAGTGGGTTTTAAATATTCTATATCAGATGCTGCGACTCACCAAGATATTAGTGTTTAGTTTCTTTTGGCAGTTTGTTATTCCTGTTTCTATTGCTTTTATATCTTTTTCAAGATTCTAATATATCATGTTGTGGATGTAGATTGAAGTTGGTGGTTTCAGAGACAAACCTGGGAAGGGTAGAGACTACTACCATACCTGTTACTGTTTAAGTGGTCTTTCAATTGCTCAGTATAGCTGGACCGACGAAGCTGATTCTCCACCATTACCCAGGGATGTATTTGGTCCTTATTCCAAATGTCTGTTGGAACAGGTTCACCCACTCTTCAACGTAGTGTTGGATCGGTATTATGAAGCTCGCGAATACTTCTCAGGCTTGTGAGACTGTTTCACCACTTTCATTAGCACCAACTTTTTCAGAAACTTAGTTGCAATCCAGAAGTTAAAAGTGTCATTGGGTTCAAAAGAGTTGTGATCGTTTATGTACAATATCCTTGCATTTGTATACGTGATACAAGTTGAGAGAATAACGGGTACTTTCTGAACTTGCTGAACTAGCAC-TAAATTCGTCTCT-GTTTAGTGAGGTCTGTAAACATCAATGTGAAATTGCGAGATATGCATGTAATAGTGGCTAAGATTTACAAATCTGGATACCGGTTATTAGTGATCAGAAATTTCATTCAATTTCCCAAACGGTCACCTAAGTTTAGGATATTGCTTTAAAATATTATTTATTTTTCATTTAAG-ATCAAA</genome_strand>
        <mrna_strand>GTAAACGAGCGTTGATTTGTCGCTGACGAAATTTACAGTCAAGAGTAGTAACCGGTTGTAGTGAAAAAATGGAGTCGAGGAAAGTGACGAAGACGCTGGAAGATCAATGGGTGGTGGAGCGTCGAGTCCGAGAGATATACGATTATTTCTACAGCATTTCCCCCAACTCTCCGTCCGACCT.......................................................................................................CATAGAGATCGAACGTGACAAACACTTCGGTTATCTAAGCCAAGGTCTCAGAAAACTTGGTCCGTCGTTTTCCGTTTTGGATGCCAG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCGACCATGGCTTTGCTACTGGACACTTCATTCAATCGCTTTGTTGGGAGAATCTATTGGTGGCAAACTGGAAAATGATGCAATTGACTTTCTGACCCGTTGCCAG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATAAAGATGGTGGCTATGGAGGTGGACCTGGTCAG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATGCCTCATCTTGCAACTACTTATGCTGCAGTCAATTCACTAATAACTTTGGGCAAACCTGAAGCTCTGTCATCAATTAATAG.................................................................................AGAAAAGTTGTACACATTTTTGCTGCGAATGAAAGACGCAAGTGGTGGATTCAG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATGCACGATGGTGGAGAAGTAGATGTTCGTGCCTGTTATACTGCCATTTCT...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTGCAAATATATTAAACATTGTGGATGACGAGCTGATTCATGGTGTTGGAAATTACATCCTAAG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTGTCAGACTTATGAAGGTGGAATTGCTGGCGAACCAGGTTCTGAAGCTCATGGTGG......................................................................................................................................................GTATACTTTCTGTGGGTTGGCTGCAATGATTCTGATCAACGAAGTAGATCGATTGGACTTGCCAGGTTTAATT...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATTGGGTGGTATTTAGACAAGGGGTCGAAGGTGGATTTCAAGGCAGGACAAATAAATTAGTCGATGGCTGCTATTCCTTTTGGCAG......................................................................................GGCGCGGTAGTGTTTCTTATACAAAGACTAAATTTGATAGTCCATGAACAACTAGGGCTGTCAAATGACCTCAGTACAGAAAGTGCTGATGATTCTTCAGAGTCAGAGTTATCTGATGAAGAAGAGCATTTGGAAGGGATATCCTCTCATGTTCAGGATACTTTCCCTCTTGGACAAGCAG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGCTTGTCAAGAAAATGCTTCTCATAGCCCAAAAATAGCAGATACTGGATATGAGTTTATCAACCGACCCATAGCTATGAGGCCTCTCTTTGACAGCATGTATCTGCAGCAATATGTTCTTCTTTGCTCTCAG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTGAAGTTGGTGGTTTCAGAGACAAACCTGGGAAGGGTAGAGACTACTACCATACCTGTTACTGTTTAAGTGGTCTTTCAATTGCTCAGTATAGCTGGACCGACGAAGCTGATTCTACACCATTACCCAGGGATGTATTTGGTCCTTATTCCAAATGTCTGTTGGAACAGGTTCACCCACTCTTCAACGTAGTGTTGGATCGGTATTATGAAGCTCGCGAATAC-TCTCAGGCTTGTGAGACTGTTTCACCACTTTCATTAGCACCAACTTTTTCAGAAACTTAGTTGCAATCCAGAAGTTAAAAGTGTCATTGGGTTCAAAAGAGTTGTGATCGTTTATGTAC-ATATCCTTGCATTTGTATACGTGATACAAGTTGAGAGAATAACGGGTACTTTCTGAACTTGCTGAACTAGCACGTAAATTCGTCTCTGGTTTAGTGAGGTCTGTAAACATCAATGTGAAATTGCGAGATATGCATGTAATAGTGGCTAAGATTTACAAATCTGGATACCGGTTATTAGTGATCAGAAATTTCATTCAATTTCCCAAACGGTCACCTAAGTTTAGGATATTGCTTTAAAATATTATTTATTTTTCATTTAAGAATCAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0236E02-u8qcS/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E618323" ref_strand="+" ref_description="SGN-E618323 [69000]">
      <seq>ttaagataatgcttctgatagcccaaagatagcagatactggatatgagtttatcaaccggcccatagctatgcggcctctctttgacagcatgtatctgcaacaatatgttcttctttgctcccagattgaagtaggtggtttcagagacaaacctgggaagggtagagactactatcatacgtgttactgtttaagtggtctttcaattgctcagtatagctggaccgacgaagctgattctccaccattacccagggatgtatttggtccttattccaaatgtctgttggaacaggttcacccactcttcaacatagagttggatcggtattatgaagctcgcaaatacttctcaggcttgtgagaatgtttcaccactttcattagcaccaacttttcagaaacgtaggtgcatccagaacttgaaagagtcactgggttcttgtaatcgtttatatgtacaatctatacgtaatacaagttgagagtaacgggtacctactgaacctgccgaactagctctaaatccgtctctgtttagttaggtctgtaaaccatcaatgtgaaattgcgagatatgcatgtaaaagtggctatgatttacgaatctggatactggtgattagtgatcagaaatttcattttggtg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0236E02-u8qcS/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0236E02.1" temp_strand="-" temp_description="C02HBa0236E02.1  AC215430.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0236E02 sequenced_by:kribb upload_account_name:korea">
        <position start="49307" stop="47294"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="49007" g_stop="48881" g_length="127"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="127" r_length="127" r_score="0.937"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="48880" i_stop="48133" i_length="748">
            <donor d_prob="0.816" d_score="0.96"/>
            <acceptor a_prob="0.999" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="48132" g_stop="47588" g_length="545"/>
          <reference_exon_boundary r_type="cDNA" r_start="128" r_stop="652" r_length="525" r_score="0.892"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0236E02.1" gen_strand="-" ref_id="SGN-E618323" ref_strand="+">
        <total_alignment_score>0.900</total_alignment_score>
        <cumulative_length_of_scored_exons>672</cumulative_length_of_scored_exons>
        <coverage percentage="1.031" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0236E02.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E618323" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="49007" e_stop="48881"/>
          <exon e_start="48132" e_stop="47588"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCAAGAAAATGCTTCTCATAGCCCAAAAATAGCAGATACTGGATATGAGTTTATCAACCGACCCATAGCTATGAGGCCTCTCTTTGACAGCATGTATCTGCAGCAATATGTTCTTCTTTGCTCTCAGGTGCTTAAATTTTCGAGAAAATATATTCTGAAGATCCCTGTTCACTCTTGCATGTCCCTTGCTTTGGTGTAGGATTGTAATGCATATGCACAGCAGCACAAGCTGGAAAATAAGGGATGAAGAAAAAATCTCAAGAAAATTATAATCGTATAAGAAGCTAAGATTTTGTTTATAAAATTTGTAACATCACTGAAAATGCATATGAGAAACTGGTTTATTTGAGCTTCTAGGCCCTACATAGTTTAAAGAAATAAGTAAATTATATCGGGTTTCTCTCCTAATCTCGTCTGAAGATGGAATTGTTGTCTGATTTTGGAGCATCACTAAAACCACACCGTTCTTGTTAGAACATCTTGAATATCATTCATCTGCTGGGCATCATTATTTCTCCATTAACATATAAATTCAAGAGCCTTTAAAAGGCATGTGTATTTGATATAATGTTCTTTTTTGAATTTGTTGGCAACATGAAGTCGTGTACTAATCATCCTCTTAATTGGTGTTGGATTCAACAGCTTTATTTTGCATTCTTTTCATAATCAGAGTTCAATTTTCTTGTGTATAATTGGTAACTATTTATTCATTCTTCCAAGGGAAAAAGAAAGTTAAGTGGGTTTTAAATATTCTATATCAGATGCTGCGACTCACCAAGATATTAGTGTTTAGTTTCTTTTGGCAGTTTGTTATTCCTGTTTCTATTGCTTTTATATCTTTTTCAAGATTCTAATATATCATGTTGTGGATGTAGATTGAAGTTGGTGGTTTCAGAGACAAACCTGGGAAGGGTAGAGACTACTACCATACCTGTTACTGTTTAAGTGGTCTTTCAATTGCTCAGTATAGCTGGACCGACGAAGCTGATTCTCCACCATTACCCAGGGATGTATTTGGTCCTTATTCCAAATGTCTGTTGGAACAGGTTCACCCACTCTTCAACGTAGTGTTGGATCGGTATTATGAAGCTCGCGAATACTTCTCAGGCTTGTGAGACTGTTTCACCACTTTCATTAGCACCAACTTTTTCAGAAACTTAGTTGCAATCCAGAAGTTAAAAGTGTCATTGGGTTCAAAAGAGTTGTGATCGTTTATGTACAATATCCTTGCATTTGTATACGTGATACAAGTTGAGAGAATAACGGGTACTTTCTGAACTTGCTGAACTAGCACTAAATTCGTCTCTGTTTAGTGAGGTCTGTAAA-CATCAATGTGAAATTGCGAGATATGCATGTAATAGTGGCTAAGATTTACAAATCTGGATACCGGTTATTAGTGATCAGAAATTTCATTCAATTT</genome_strand>
        <mrna_strand>TTAAGATAATGCTTCTGATAGCCCAAAGATAGCAGATACTGGATATGAGTTTATCAACCGGCCCATAGCTATGCGGCCTCTCTTTGACAGCATGTATCTGCAACAATATGTTCTTCTTTGCTCCCAG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTGAAGTAGGTGGTTTCAGAGACAAACCTGGGAAGGGTAGAGACTACTATCATACGTGTTACTGTTTAAGTGGTCTTTCAATTGCTCAGTATAGCTGGACCGACGAAGCTGATTCTCCACCATTACCCAGGGATGTATTTGGTCCTTATTCCAAATGTCTGTTGGAACAGGTTCACCCACTCTTCAACATAGAGTTGGATCGGTATTATGAAGCTCGCAAATACTTCTCAGGCTTGTGAGAATGTTTCACCACTTTCATTAGCACCAAC-TTTTCAGAAACGTAGGTGC-ATCCAGAACTTGAAAGAGTCACTGGGTTC-------TTGTAATCG--T-T-T---ATAT--GTACA-ATCTATACGTAATACAAGTTGAGAG--TAACGGGTACCTACTGAACCTGCCGAACTAGCTCTAAATCCGTCTCTGTTTAGTTAGGTCTGTAAACCATCAATGTGAAATTGCGAGATATGCATGTAAAAGTGGCTATGATTTACGAATCTGGATACTGGTGATTAGTGATCAGAAATTTCATTTTGGTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0236E02-u8qcS/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E458852" ref_strand="-" ref_description="SGN-E458852 [cPRO-32-J1]">
      <seq>ccatgttcaggagactttccctcttggacaagaaggtgcaggacaagataatgcttctgatagcccaaagatagcagatactggatatgagtttatcaaccggcccatagctatgcggcctctctttgacagcatgtatctgcaacaatatgttcttctttgctcccagattgaagtaggtggtttcagagacaaacctgggaagggtagagactactatcatacgtgttactgtttaagtggtctttcaattgctcagtatagctggaccgacgaagctgattctccaccattacccagggatgtatttggtccttattccaaatgtctgttggaacaggttcacccactcttcaacgtagagttggatcggtattatgaagctcgcaaatacttctcaggcttgtgagaatgtttcaccactttcattagcaccaacttttcagaaacgtagatgcatccagaacttaaaagagtcactgggttcttgtaatcgtttatatgtacaatatctatacgtaatacaagttgagagtaacgggtaccttctgaacctgctgaactagctcaaaatccgtctctgtttagctaggtctgtaaaacatcaatgtgaaattgcgagatatgcatgtaaaagtggctatgatttacgaatctggatactggtgattagtgatcagaaatttcattttggtgaaaaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0236E02-u8qcS/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0236E02.1" temp_strand="-" temp_description="C02HBa0236E02.1  AC215430.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0236E02 sequenced_by:kribb upload_account_name:korea">
        <position start="49907" stop="47294"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="49608" g_stop="49574" g_length="35"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="35" r_length="35" r_score="0.914"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="49573" i_stop="49015" i_length="559">
            <donor d_prob="0.776" d_score="0.00"/>
            <acceptor a_prob="0.985" a_score="0.88"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="49014" g_stop="48881" g_length="134"/>
          <reference_exon_boundary r_type="cDNA" r_start="36" r_stop="169" r_length="134" r_score="0.925"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="48880" i_stop="48133" i_length="748">
            <donor d_prob="0.816" d_score="0.96"/>
            <acceptor a_prob="0.999" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="48132" g_stop="47597" g_length="536"/>
          <reference_exon_boundary r_type="cDNA" r_start="170" r_stop="687" r_length="518" r_score="0.905"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="697" polyA_stop="718"/>
      <MATCH_line gen_id="C02HBa0236E02.1" gen_strand="-" ref_id="SGN-E458852" ref_strand="-">
        <total_alignment_score>0.909</total_alignment_score>
        <cumulative_length_of_scored_exons>705</cumulative_length_of_scored_exons>
        <coverage percentage="0.982" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0236E02.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E458852" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="49608" e_stop="49574"/>
          <exon e_start="49014" e_stop="48881"/>
          <exon e_start="48132" e_stop="47597"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCATGTTCAGGATACTTTCCCTCTTGGACAAGCAGGTATGTCAATTTGAGGAACAATAGTTCAAAAGGCCAAAAAGAAAGTACCACTGTGTGATTCACTGGTCTGTTTGTTGCAGTGCTATTCAACTTTGTCCTTGGATCTGAATTAAATAGAGCATATCATGTTATAACGGAATCCAGTGGGTGGAATTTAATAAATGAAGGATGAAAAGAATATATTCCATCTTAAACCACTTCTCTTGTCACAGAAGTGGCACTTGGATTGTATATGAACTTGATATCTCCAGATGGTCAGGTAGTTAGTAACCTATAGTGCTATCAGCTGAACTTCACCTTAACTAGTTACCATATGTTGGATTCTTCAAACAATGTATGTGTAAAAGTTGGATTATCAAAATGGGTTGTATGTCCCTTACTCTGATCCATTTGTCCATTTGACGGTGTACCGAGATTGTTTAGTAGAGCATTTCATTGGAAGTTTGAAACTCTGACAGCTCCTAATATTTCTATCCAGATTCTTTGTGTTGTCTAGATCTTTCTTTCTTTTAGGTCTTATCACAATTACTTTCTAATCACATCATTTCATTTTTCTTAGGTGCTTGTCAAGAAAATGCTTCTCATAGCCCAAAAATAGCAGATACTGGATATGAGTTTATCAACCGACCCATAGCTATGAGGCCTCTCTTTGACAGCATGTATCTGCAGCAATATGTTCTTCTTTGCTCTCAGGTGCTTAAATTTTCGAGAAAATATATTCTGAAGATCCCTGTTCACTCTTGCATGTCCCTTGCTTTGGTGTAGGATTGTAATGCATATGCACAGCAGCACAAGCTGGAAAATAAGGGATGAAGAAAAAATCTCAAGAAAATTATAATCGTATAAGAAGCTAAGATTTTGTTTATAAAATTTGTAACATCACTGAAAATGCATATGAGAAACTGGTTTATTTGAGCTTCTAGGCCCTACATAGTTTAAAGAAATAAGTAAATTATATCGGGTTTCTCTCCTAATCTCGTCTGAAGATGGAATTGTTGTCTGATTTTGGAGCATCACTAAAACCACACCGTTCTTGTTAGAACATCTTGAATATCATTCATCTGCTGGGCATCATTATTTCTCCATTAACATATAAATTCAAGAGCCTTTAAAAGGCATGTGTATTTGATATAATGTTCTTTTTTGAATTTGTTGGCAACATGAAGTCGTGTACTAATCATCCTCTTAATTGGTGTTGGATTCAACAGCTTTATTTTGCATTCTTTTCATAATCAGAGTTCAATTTTCTTGTGTATAATTGGTAACTATTTATTCATTCTTCCAAGGGAAAAAGAAAGTTAAGTGGGTTTTAAATATTCTATATCAGATGCTGCGACTCACCAAGATATTAGTGTTTAGTTTCTTTTGGCAGTTTGTTATTCCTGTTTCTATTGCTTTTATATCTTTTTCAAGATTCTAATATATCATGTTGTGGATGTAGATTGAAGTTGGTGGTTTCAGAGACAAACCTGGGAAGGGTAGAGACTACTACCATACCTGTTACTGTTTAAGTGGTCTTTCAATTGCTCAGTATAGCTGGACCGACGAAGCTGATTCTCCACCATTACCCAGGGATGTATTTGGTCCTTATTCCAAATGTCTGTTGGAACAGGTTCACCCACTCTTCAACGTAGTGTTGGATCGGTATTATGAAGCTCGCGAATACTTCTCAGGCTTGTGAGACTGTTTCACCACTTTCATTAGCACCAACTTTTTCAGAAACTTAGTTGCAATCCAGAAGTTAAAAGTGTCATTGGGTTCAAAAGAGTTGTGATCGTTTATGTACAATATCCTTGCATTTGTATACGTGATACAAGTTGAGAGAATAACGGGTACTTTCTGAACTTGCTGAACTAGCACTAAATTCGTCTCTGTTTAGTGAGGTCTGT-AAACATCAATGTGAAATTGCGAGATATGCATGTAATAGTGGCTAAGATTTACAAATCTGGATACCGGTTATTAGTGATCAGAAATTTC</genome_strand>
        <mrna_strand>CCATGTTCAGGAGACTTTCCCTCTTGGACAAGAAG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGCAGGACAAGATAATGCTTCTGATAGCCCAAAGATAGCAGATACTGGATATGAGTTTATCAACCGGCCCATAGCTATGCGGCCTCTCTTTGACAGCATGTATCTGCAACAATATGTTCTTCTTTGCTCCCAG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTGAAGTAGGTGGTTTCAGAGACAAACCTGGGAAGGGTAGAGACTACTATCATACGTGTTACTGTTTAAGTGGTCTTTCAATTGCTCAGTATAGCTGGACCGACGAAGCTGATTCTCCACCATTACCCAGGGATGTATTTGGTCCTTATTCCAAATGTCTGTTGGAACAGGTTCACCCACTCTTCAACGTAGAGTTGGATCGGTATTATGAAGCTCGCAAATACTTCTCAGGCTTGTGAGAATGTTTCACCACTTTCATTAGCACCAAC-TTTTCAGAAACGTAGATGC-ATCCAGAACTTAAAAGAGTCACTGGGTTC-------TTGTAATCGTTTA--T---ATGTAC---AATATCTATACGTAATACAAGTTGAGAG--TAACGGGTACCTTCTGAACCTGCTGAACTAGCTCAAAATCCGTCTCTGTTTAGCTAGGTCTGTAAAACATCAATGTGAAATTGCGAGATATGCATGTAAAAGTGGCTATGATTTACGAATCTGGATACTGGTGATTAGTGATCAGAAATTTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0236E02-u8qcS/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E427079" ref_strand="-" ref_description="SGN-E427079 [STM-47-B16]">
      <seq>acaagaaggtgcaggacaagataatgcttctgatagcccaaagatagcagatactggacatgagtttatcaaccggcccatagctatgcggcctctctttgacagcatgtatctgcaacaatatgtcttctttgctcccagattgaagtaggtggtttcagagacaaacctgggaagggtagagactactaccatacgtgttactgtttaagtggtctttcaattgctcagtatagctggaccgacgaagctgattctccaccattacccagggatgtatttggtccttattccaaatgtctgttggaacaggttcacccactcttcaacgtagagttggatcggtattatgaagctcgcaaatacttctcaggcttgtgagaatgtttcactactttcattagcaccaacttttcagaaacgtaggtgcatccagaacttaaaagagtcactgggttcttgtaatcgtttatatgtacaatatctatacgtaatacaagttgagagtaacgggtgccttctgaacctgctgaactagctctaaatccgtctctgtttagttaggtctgtaaacatcaatgtgaaattgagagatatgcatgtaaaagtggctatgatttacgaatctggatactggtgattagtgatcagaaatttcattttggtgaaaacaatttgttatcaggcaagaggtagaaattgc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0236E02-u8qcS/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0236E02.1" temp_strand="-" temp_description="C02HBa0236E02.1  AC215430.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0236E02 sequenced_by:kribb upload_account_name:korea">
        <position start="49316" stop="47294"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="49014" g_stop="48881" g_length="134"/>
          <reference_exon_boundary r_type="cDNA" r_start="9" r_stop="141" r_length="133" r_score="0.910"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="48880" i_stop="48133" i_length="748">
            <donor d_prob="0.816" d_score="0.94"/>
            <acceptor a_prob="0.999" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="48132" g_stop="47597" g_length="536"/>
          <reference_exon_boundary r_type="cDNA" r_start="142" r_stop="658" r_length="517" r_score="0.909"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0236E02.1" gen_strand="-" ref_id="SGN-E427079" ref_strand="-">
        <total_alignment_score>0.909</total_alignment_score>
        <cumulative_length_of_scored_exons>670</cumulative_length_of_scored_exons>
        <coverage percentage="0.953" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0236E02.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E427079" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="49014" e_stop="48881"/>
          <exon e_start="48132" e_stop="47597"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTGCTTGTCAAGAAAATGCTTCTCATAGCCCAAAAATAGCAGATACTGGATATGAGTTTATCAACCGACCCATAGCTATGAGGCCTCTCTTTGACAGCATGTATCTGCAGCAATATGTTCTTCTTTGCTCTCAGGTGCTTAAATTTTCGAGAAAATATATTCTGAAGATCCCTGTTCACTCTTGCATGTCCCTTGCTTTGGTGTAGGATTGTAATGCATATGCACAGCAGCACAAGCTGGAAAATAAGGGATGAAGAAAAAATCTCAAGAAAATTATAATCGTATAAGAAGCTAAGATTTTGTTTATAAAATTTGTAACATCACTGAAAATGCATATGAGAAACTGGTTTATTTGAGCTTCTAGGCCCTACATAGTTTAAAGAAATAAGTAAATTATATCGGGTTTCTCTCCTAATCTCGTCTGAAGATGGAATTGTTGTCTGATTTTGGAGCATCACTAAAACCACACCGTTCTTGTTAGAACATCTTGAATATCATTCATCTGCTGGGCATCATTATTTCTCCATTAACATATAAATTCAAGAGCCTTTAAAAGGCATGTGTATTTGATATAATGTTCTTTTTTGAATTTGTTGGCAACATGAAGTCGTGTACTAATCATCCTCTTAATTGGTGTTGGATTCAACAGCTTTATTTTGCATTCTTTTCATAATCAGAGTTCAATTTTCTTGTGTATAATTGGTAACTATTTATTCATTCTTCCAAGGGAAAAAGAAAGTTAAGTGGGTTTTAAATATTCTATATCAGATGCTGCGACTCACCAAGATATTAGTGTTTAGTTTCTTTTGGCAGTTTGTTATTCCTGTTTCTATTGCTTTTATATCTTTTTCAAGATTCTAATATATCATGTTGTGGATGTAGATTGAAGTTGGTGGTTTCAGAGACAAACCTGGGAAGGGTAGAGACTACTACCATACCTGTTACTGTTTAAGTGGTCTTTCAATTGCTCAGTATAGCTGGACCGACGAAGCTGATTCTCCACCATTACCCAGGGATGTATTTGGTCCTTATTCCAAATGTCTGTTGGAACAGGTTCACCCACTCTTCAACGTAGTGTTGGATCGGTATTATGAAGCTCGCGAATACTTCTCAGGCTTGTGAGACTGTTTCACCACTTTCATTAGCACCAACTTTTTCAGAAACTTAGTTGCAATCCAGAAGTTAAAAGTGTCATTGGGTTCAAAAGAGTTGTGATCGTTTATGTACAATATCCTTGCATTTGTATACGTGATACAAGTTGAGAGAATAACGGGTACTTTCTGAACTTGCTGAACTAGCACTAAATTCGTCTCTGTTTAGTGAGGTCTGTAAACATCAATGTGAAATTGCGAGATATGCATGTAATAGTGGCTAAGATTTACAAATCTGGATACCGGTTATTAGTGATCAGAAATTTC</genome_strand>
        <mrna_strand>GTGCAGGACAAGATAATGCTTCTGATAGCCCAAAGATAGCAGATACTGGACATGAGTTTATCAACCGGCCCATAGCTATGCGGCCTCTCTTTGACAGCATGTATCTGCAACAATATG-TCTTCTTTGCTCCCAG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTGAAGTAGGTGGTTTCAGAGACAAACCTGGGAAGGGTAGAGACTACTACCATACGTGTTACTGTTTAAGTGGTCTTTCAATTGCTCAGTATAGCTGGACCGACGAAGCTGATTCTCCACCATTACCCAGGGATGTATTTGGTCCTTATTCCAAATGTCTGTTGGAACAGGTTCACCCACTCTTCAACGTAGAGTTGGATCGGTATTATGAAGCTCGCAAATACTTCTCAGGCTTGTGAGAATGTTTCACTACTTTCATTAGCACCAAC-TTTTCAGAAACGTAGGTGC-ATCCAGAACTTAAAAGAGTCACTGGGTTC-------TTGTAATCGTTTA--T---ATGTAC---AATATCTATACGTAATACAAGTTGAGAG--TAACGGGTGCCTTCTGAACCTGCTGAACTAGCTCTAAATCCGTCTCTGTTTAGTTAGGTCTGTAAACATCAATGTGAAATTGAGAGATATGCATGTAAAAGTGGCTATGATTTACGAATCTGGATACTGGTGATTAGTGATCAGAAATTTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0236E02-u8qcS/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E436404" ref_strand="-" ref_description="SGN-E436404 [STM-62-P6]">
      <seq>cccagattgaagtaggtggtttcagagacaaacctgggaagggtagagactactatcatacgtgttactgtttaagtggtctttcaattgctcagtatagctggaccgacgaagctgattctccaccattacccagggatgtatttggtccttattccaaatgtctgttggaacaggttcacccactcttcaacgtagagttggatcggtattatgaagctcgcaaatacttctcaggcttgtgagaatgtttcaccactttcattagcaccaacttttcagaaacgtagatgcatccagaacttaaaagagtcactgggttcttgtaatcgtttatatgtacaatatctatacgtaatacaagttgagagtaacgggtaccttctgaacctgctgaactagctcaaaatccgtctctgtttagctaggtctgtaaaacatcaatgtgaaattgcgagatatgcatgtaaaagtggctatgatttacgaatctggatactggtgattagtgatcagaaatttcattttggtgaaaaaaaaaaaaaaaaaaaaac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0236E02-u8qcS/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0236E02.1" temp_strand="-" temp_description="C02HBa0236E02.1  AC215430.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0236E02 sequenced_by:kribb upload_account_name:korea">
        <position start="48434" stop="47294"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="48132" g_stop="47597" g_length="536"/>
          <reference_exon_boundary r_type="cDNA" r_start="6" r_stop="523" r_length="518" r_score="0.905"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="533" polyA_stop="554"/>
      <MATCH_line gen_id="C02HBa0236E02.1" gen_strand="-" ref_id="SGN-E436404" ref_strand="-">
        <total_alignment_score>0.905</total_alignment_score>
        <cumulative_length_of_scored_exons>536</cumulative_length_of_scored_exons>
        <coverage percentage="0.968" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0236E02.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E436404" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="48132" e_stop="47597"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATTGAAGTTGGTGGTTTCAGAGACAAACCTGGGAAGGGTAGAGACTACTACCATACCTGTTACTGTTTAAGTGGTCTTTCAATTGCTCAGTATAGCTGGACCGACGAAGCTGATTCTCCACCATTACCCAGGGATGTATTTGGTCCTTATTCCAAATGTCTGTTGGAACAGGTTCACCCACTCTTCAACGTAGTGTTGGATCGGTATTATGAAGCTCGCGAATACTTCTCAGGCTTGTGAGACTGTTTCACCACTTTCATTAGCACCAACTTTTTCAGAAACTTAGTTGCAATCCAGAAGTTAAAAGTGTCATTGGGTTCAAAAGAGTTGTGATCGTTTATGTACAATATCCTTGCATTTGTATACGTGATACAAGTTGAGAGAATAACGGGTACTTTCTGAACTTGCTGAACTAGCACTAAATTCGTCTCTGTTTAGTGAGGTCTGT-AAACATCAATGTGAAATTGCGAGATATGCATGTAATAGTGGCTAAGATTTACAAATCTGGATACCGGTTATTAGTGATCAGAAATTTC</genome_strand>
        <mrna_strand>ATTGAAGTAGGTGGTTTCAGAGACAAACCTGGGAAGGGTAGAGACTACTATCATACGTGTTACTGTTTAAGTGGTCTTTCAATTGCTCAGTATAGCTGGACCGACGAAGCTGATTCTCCACCATTACCCAGGGATGTATTTGGTCCTTATTCCAAATGTCTGTTGGAACAGGTTCACCCACTCTTCAACGTAGAGTTGGATCGGTATTATGAAGCTCGCAAATACTTCTCAGGCTTGTGAGAATGTTTCACCACTTTCATTAGCACCAAC-TTTTCAGAAACGTAGATGC-ATCCAGAACTTAAAAGAGTCACTGGGTTC-------TTGTAATCGTTTA--T---ATGTAC---AATATCTATACGTAATACAAGTTGAGAG--TAACGGGTACCTTCTGAACCTGCTGAACTAGCTCAAAATCCGTCTCTGTTTAGCTAGGTCTGTAAAACATCAATGTGAAATTGCGAGATATGCATGTAAAAGTGGCTATGATTTACGAATCTGGATACTGGTGATTAGTGATCAGAAATTTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0236E02-u8qcS/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E614115" ref_strand="+" ref_description="SGN-E614115 [63897]">
      <seq>caaacctgggaagggtagagactactatcatacgtgttactgtttaagtggtctttcaattgctcagtatagctggaccgacgaagctgattctccaccattacccagggatgtatttggtccttattccaaatgtctgttggaacaggttcacccactcttcaacgtagagttggatcggtattatgaagctcgcaaatacttctcaggcttgtgagaatgtttcaccactttcattagcaccaacttttcagaaacgtagatgcatccagaacttaaaagagtcactgggttcttgtaatcgtttatatgtacaatatctatacgtaatacaagttgagagtaacgggtaccttctgaacctgctgaactagctcaaaatccgtctctgtttagctaggtctgtaaaacatcaatgtgaaattgcgagatatgcatgtaaaagtggctatgatttacgaatctggatactggtgattagtgatcagaaatttcattttggtgaaaacaatttgttatcaggccgcaacttttctttgataaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0236E02-u8qcS/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0236E02.1" temp_strand="-" temp_description="C02HBa0236E02.1  AC215430.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0236E02 sequenced_by:kribb upload_account_name:korea">
        <position start="48409" stop="47161"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="48109" g_stop="47597" g_length="513"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="495" r_length="495" r_score="0.903"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="540" polyA_stop="551"/>
      <MATCH_line gen_id="C02HBa0236E02.1" gen_strand="-" ref_id="SGN-E614115" ref_strand="+">
        <total_alignment_score>0.903</total_alignment_score>
        <cumulative_length_of_scored_exons>513</cumulative_length_of_scored_exons>
        <coverage percentage="0.931" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0236E02.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E614115" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="48109" e_stop="47597"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAAACCTGGGAAGGGTAGAGACTACTACCATACCTGTTACTGTTTAAGTGGTCTTTCAATTGCTCAGTATAGCTGGACCGACGAAGCTGATTCTCCACCATTACCCAGGGATGTATTTGGTCCTTATTCCAAATGTCTGTTGGAACAGGTTCACCCACTCTTCAACGTAGTGTTGGATCGGTATTATGAAGCTCGCGAATACTTCTCAGGCTTGTGAGACTGTTTCACCACTTTCATTAGCACCAACTTTTTCAGAAACTTAGTTGCAATCCAGAAGTTAAAAGTGTCATTGGGTTCAAAAGAGTTGTGATCGTTTATGTACAATATCCTTGCATTTGTATACGTGATACAAGTTGAGAGAATAACGGGTACTTTCTGAACTTGCTGAACTAGCACTAAATTCGTCTCTGTTTAGTGAGGTCTGT-AAACATCAATGTGAAATTGCGAGATATGCATGTAATAGTGGCTAAGATTTACAAATCTGGATACCGGTTATTAGTGATCAGAAATTTC</genome_strand>
        <mrna_strand>CAAACCTGGGAAGGGTAGAGACTACTATCATACGTGTTACTGTTTAAGTGGTCTTTCAATTGCTCAGTATAGCTGGACCGACGAAGCTGATTCTCCACCATTACCCAGGGATGTATTTGGTCCTTATTCCAAATGTCTGTTGGAACAGGTTCACCCACTCTTCAACGTAGAGTTGGATCGGTATTATGAAGCTCGCAAATACTTCTCAGGCTTGTGAGAATGTTTCACCACTTTCATTAGCACCAAC-TTTTCAGAAACGTAGATGC-ATCCAGAACTTAAAAGAGTCACTGGGTTC-------TTGTAATCGTTTA--T---ATGTAC---AATATCTATACGTAATACAAGTTGAGAG--TAACGGGTACCTTCTGAACCTGCTGAACTAGCTCAAAATCCGTCTCTGTTTAGCTAGGTCTGTAAAACATCAATGTGAAATTGCGAGATATGCATGTAAAAGTGGCTATGATTTACGAATCTGGATACTGGTGATTAGTGATCAGAAATTTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0236E02-u8qcS/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E619157" ref_strand="+" ref_description="SGN-E619157 [69843]">
      <seq>caagataatgcttctgatagcccaaagatagcagatactggatatgagtttatcaaccggcccatagctatgcggcctctctttgacagcatgtatctgcaacaatatgttcttctttgctcccagattgaagtaggtggtttcagagacaaacctgggaagggtagagactactatcatacgtgttactgtttaagtggtctttcaattgctcagtatagctggaccgacgaagctgattctccaccattacccagggatgtatttggtccttattccaaatgtctgttggaacaggttcacccactcttcaacatagagttggatcggtattatgaagctcgcaaatacttctcaggcttgtgagaatgtttcaccactttcattagcaccaacttttcagaaacgtaggtgcatccagaacttgaaagagtcactgggttcttgtaatcgtttatatgtacaatctatacgtaatacaagttgagagtaacgggtacctactgaacctgccgaactagctctaaatccgtctctgtttagttaggtctgtaaacatcaatgtgaaattgcgagatatgcatgtaaaagtggctatgatttacgaatctggatactggtgattagt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0236E02-u8qcS/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0236E02.1" temp_strand="-" temp_description="C02HBa0236E02.1  AC215430.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0236E02 sequenced_by:kribb upload_account_name:korea">
        <position start="49306" stop="47310"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="49006" g_stop="48881" g_length="126"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="126" r_length="126" r_score="0.944"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="48880" i_stop="48133" i_length="748">
            <donor d_prob="0.816" d_score="0.96"/>
            <acceptor a_prob="0.999" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="48132" g_stop="47610" g_length="523"/>
          <reference_exon_boundary r_type="cDNA" r_start="127" r_stop="628" r_length="502" r_score="0.901"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0236E02.1" gen_strand="-" ref_id="SGN-E619157" ref_strand="+">
        <total_alignment_score>0.909</total_alignment_score>
        <cumulative_length_of_scored_exons>649</cumulative_length_of_scored_exons>
        <coverage percentage="1.033" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0236E02.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E619157" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="49006" e_stop="48881"/>
          <exon e_start="48132" e_stop="47610"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAAGAAAATGCTTCTCATAGCCCAAAAATAGCAGATACTGGATATGAGTTTATCAACCGACCCATAGCTATGAGGCCTCTCTTTGACAGCATGTATCTGCAGCAATATGTTCTTCTTTGCTCTCAGGTGCTTAAATTTTCGAGAAAATATATTCTGAAGATCCCTGTTCACTCTTGCATGTCCCTTGCTTTGGTGTAGGATTGTAATGCATATGCACAGCAGCACAAGCTGGAAAATAAGGGATGAAGAAAAAATCTCAAGAAAATTATAATCGTATAAGAAGCTAAGATTTTGTTTATAAAATTTGTAACATCACTGAAAATGCATATGAGAAACTGGTTTATTTGAGCTTCTAGGCCCTACATAGTTTAAAGAAATAAGTAAATTATATCGGGTTTCTCTCCTAATCTCGTCTGAAGATGGAATTGTTGTCTGATTTTGGAGCATCACTAAAACCACACCGTTCTTGTTAGAACATCTTGAATATCATTCATCTGCTGGGCATCATTATTTCTCCATTAACATATAAATTCAAGAGCCTTTAAAAGGCATGTGTATTTGATATAATGTTCTTTTTTGAATTTGTTGGCAACATGAAGTCGTGTACTAATCATCCTCTTAATTGGTGTTGGATTCAACAGCTTTATTTTGCATTCTTTTCATAATCAGAGTTCAATTTTCTTGTGTATAATTGGTAACTATTTATTCATTCTTCCAAGGGAAAAAGAAAGTTAAGTGGGTTTTAAATATTCTATATCAGATGCTGCGACTCACCAAGATATTAGTGTTTAGTTTCTTTTGGCAGTTTGTTATTCCTGTTTCTATTGCTTTTATATCTTTTTCAAGATTCTAATATATCATGTTGTGGATGTAGATTGAAGTTGGTGGTTTCAGAGACAAACCTGGGAAGGGTAGAGACTACTACCATACCTGTTACTGTTTAAGTGGTCTTTCAATTGCTCAGTATAGCTGGACCGACGAAGCTGATTCTCCACCATTACCCAGGGATGTATTTGGTCCTTATTCCAAATGTCTGTTGGAACAGGTTCACCCACTCTTCAACGTAGTGTTGGATCGGTATTATGAAGCTCGCGAATACTTCTCAGGCTTGTGAGACTGTTTCACCACTTTCATTAGCACCAACTTTTTCAGAAACTTAGTTGCAATCCAGAAGTTAAAAGTGTCATTGGGTTCAAAAGAGTTGTGATCGTTTATGTACAATATCCTTGCATTTGTATACGTGATACAAGTTGAGAGAATAACGGGTACTTTCTGAACTTGCTGAACTAGCACTAAATTCGTCTCTGTTTAGTGAGGTCTGTAAACATCAATGTGAAATTGCGAGATATGCATGTAATAGTGGCTAAGATTTACAAATCTGGATACCGGTTATTAGT</genome_strand>
        <mrna_strand>CAAGATAATGCTTCTGATAGCCCAAAGATAGCAGATACTGGATATGAGTTTATCAACCGGCCCATAGCTATGCGGCCTCTCTTTGACAGCATGTATCTGCAACAATATGTTCTTCTTTGCTCCCAG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTGAAGTAGGTGGTTTCAGAGACAAACCTGGGAAGGGTAGAGACTACTATCATACGTGTTACTGTTTAAGTGGTCTTTCAATTGCTCAGTATAGCTGGACCGACGAAGCTGATTCTCCACCATTACCCAGGGATGTATTTGGTCCTTATTCCAAATGTCTGTTGGAACAGGTTCACCCACTCTTCAACATAGAGTTGGATCGGTATTATGAAGCTCGCAAATACTTCTCAGGCTTGTGAGAATGTTTCACCACTTTCATTAGCACCAAC-TTTTCAGAAACGTAGGTGC-ATCCAGAACTTGAAAGAGTCACTGGGTTC-------TTGTAATCG--T-T-T---ATAT--GTACA-ATCTATACGTAATACAAGTTGAGAG--TAACGGGTACCTACTGAACCTGCCGAACTAGCTCTAAATCCGTCTCTGTTTAGTTAGGTCTGTAAACATCAATGTGAAATTGCGAGATATGCATGTAAAAGTGGCTATGATTTACGAATCTGGATACTGGTGATTAGT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0236E02-u8qcS/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E223291" ref_strand="+" ref_description="SGN-E223291 [cLEL-14-O4](-)">
      <seq>tacccagggatgtatttggtccttattccaaatgtctgttggaacaggttcacccactcttcaacgtagtgttggatcggtattatgaagctcgcgaatacttctcaggcttgtgagactgtttcaccactttcattagcaccaactttttcagaaacttagttgcaatccagaagttaaaagtgtcattgggttcaaagagttgtgatcgtttatgtgcaatatccttgcatttgtatacgtgatacaagttgagagaataacgggtactttctgaacttgctgaactagcactaaattcgtctctgtttagtgaggtctgtaaacatcaatgtgaaattgcgagatatgcatgtaatagtggctaacctttccaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0236E02-u8qcS/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0236E02.1" temp_strand="-" temp_description="C02HBa0236E02.1  AC215430.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0236E02 sequenced_by:kribb upload_account_name:korea">
        <position start="48308" stop="47330"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="48008" g_stop="47645" g_length="364"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="363" r_length="363" r_score="0.995"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="376" polyA_stop="393"/>
      <MATCH_line gen_id="C02HBa0236E02.1" gen_strand="-" ref_id="SGN-E223291" ref_strand="+">
        <total_alignment_score>0.995</total_alignment_score>
        <cumulative_length_of_scored_exons>364</cumulative_length_of_scored_exons>
        <coverage percentage="0.926" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0236E02.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E223291" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="48008" e_stop="47645"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TACCCAGGGATGTATTTGGTCCTTATTCCAAATGTCTGTTGGAACAGGTTCACCCACTCTTCAACGTAGTGTTGGATCGGTATTATGAAGCTCGCGAATACTTCTCAGGCTTGTGAGACTGTTTCACCACTTTCATTAGCACCAACTTTTTCAGAAACTTAGTTGCAATCCAGAAGTTAAAAGTGTCATTGGGTTCAAAAGAGTTGTGATCGTTTATGTACAATATCCTTGCATTTGTATACGTGATACAAGTTGAGAGAATAACGGGTACTTTCTGAACTTGCTGAACTAGCACTAAATTCGTCTCTGTTTAGTGAGGTCTGTAAACATCAATGTGAAATTGCGAGATATGCATGTAATAGTG</genome_strand>
        <mrna_strand>TACCCAGGGATGTATTTGGTCCTTATTCCAAATGTCTGTTGGAACAGGTTCACCCACTCTTCAACGTAGTGTTGGATCGGTATTATGAAGCTCGCGAATACTTCTCAGGCTTGTGAGACTGTTTCACCACTTTCATTAGCACCAACTTTTTCAGAAACTTAGTTGCAATCCAGAAGTTAAAAGTGTCATTGGGTTC-AAAGAGTTGTGATCGTTTATGTGCAATATCCTTGCATTTGTATACGTGATACAAGTTGAGAGAATAACGGGTACTTTCTGAACTTGCTGAACTAGCACTAAATTCGTCTCTGTTTAGTGAGGTCTGTAAACATCAATGTGAAATTGCGAGATATGCATGTAATAGTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0236E02-u8qcS/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E223058" ref_strand="+" ref_description="SGN-E223058 [cLEL-14-O4](-)">
      <seq>acgtagtgttggatcggtattatgaagctcgcgaatacttctcaggcttgtgagactgtttcaccactttcattagcaccagctttttcagaaacttagttgcaatccagaagttaaaagtgtcattgggttcaaagagttgtgatcgtttatgtacaatatccttgcatttgtatacgtgatacaagttgagagaataacgggtactttctgaacttgctgaactagcactaaattcgtctctgtttagtgaggtctgtaagcatcaatgtgaaattgcgacatatgcatgtaatagtggctaagatttcaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0236E02-u8qcS/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0236E02.1" temp_strand="-" temp_description="C02HBa0236E02.1  AC215430.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0236E02 sequenced_by:kribb upload_account_name:korea">
        <position start="48245" stop="47330"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="47945" g_stop="47645" g_length="301"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="300" r_length="300" r_score="0.987"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="312" polyA_stop="330"/>
      <MATCH_line gen_id="C02HBa0236E02.1" gen_strand="-" ref_id="SGN-E223058" ref_strand="+">
        <total_alignment_score>0.987</total_alignment_score>
        <cumulative_length_of_scored_exons>301</cumulative_length_of_scored_exons>
        <coverage percentage="0.912" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0236E02.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E223058" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="47945" e_stop="47645"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACGTAGTGTTGGATCGGTATTATGAAGCTCGCGAATACTTCTCAGGCTTGTGAGACTGTTTCACCACTTTCATTAGCACCAACTTTTTCAGAAACTTAGTTGCAATCCAGAAGTTAAAAGTGTCATTGGGTTCAAAAGAGTTGTGATCGTTTATGTACAATATCCTTGCATTTGTATACGTGATACAAGTTGAGAGAATAACGGGTACTTTCTGAACTTGCTGAACTAGCACTAAATTCGTCTCTGTTTAGTGAGGTCTGTAAACATCAATGTGAAATTGCGAGATATGCATGTAATAGTG</genome_strand>
        <mrna_strand>ACGTAGTGTTGGATCGGTATTATGAAGCTCGCGAATACTTCTCAGGCTTGTGAGACTGTTTCACCACTTTCATTAGCACCAGCTTTTTCAGAAACTTAGTTGCAATCCAGAAGTTAAAAGTGTCATTGGGTTC-AAAGAGTTGTGATCGTTTATGTACAATATCCTTGCATTTGTATACGTGATACAAGTTGAGAGAATAACGGGTACTTTCTGAACTTGCTGAACTAGCACTAAATTCGTCTCTGTTTAGTGAGGTCTGTAAGCATCAATGTGAAATTGCGACATATGCATGTAATAGTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0236E02-u8qcS/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E698492" ref_strand="+" ref_description="SGN-E698492 [FA06CB05]">
      <seq>ccggtcgaaggtggatttcaaggcaggacaaataaattagtcgatggctgctattccttttggcagggcgcggtagtgtttcttatacaaagactaaatttgatagtccatgaacaactagggctgtcaaatgacctcagtacagaaagtgctgatgattcttcagagtcagagttatctgatgaagaagagcatttggaagggatatcctctcatgttcaggatactttccctcttggacaagcaggtgcttgtcaagaaaatgcttctcatagcccaaaaatagcagatactggatatgagtttatcaaccgacccatagctatgaggcctctctttgacagcatgtatctgcagcaatatgttcttctttgctctcagattgaagttggtggtttcagagacaaacctgggaagggtagagactactaccatacctgttactgtttaagtggtctttcaattgctcagtatagctggaccgacgaagctgattctccaccattacccagggatgtatttggtccttattccaaatgtctgttggaacaggttcacccactcttcaacgtagtgttggatcggtattatgaagctcgcgaatacttctcaggcttgtgagactgtttcaccactttcattagcaccaactttttcagaaacttagttgcaatccagaagttaaaagtgtcattgggttcaaaagagttgtgatcgtttatgtacaatatccttgcatttgtatacgtgatacaagttgagagaataacgggtactttctgaacttgctgaactagcactaaattcgtctctgtttagtga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0236E02-u8qcS/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0236E02.1" temp_strand="-" temp_description="C02HBa0236E02.1  AC215430.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0236E02 sequenced_by:kribb upload_account_name:korea">
        <position start="50204" stop="47392"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="49906" g_stop="49841" g_length="66"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="66" r_length="66" r_score="0.970"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="49840" i_stop="49755" i_length="86">
            <donor d_prob="0.992" d_score="1.00"/>
            <acceptor a_prob="0.919" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="49754" g_stop="49574" g_length="181"/>
          <reference_exon_boundary r_type="cDNA" r_start="67" r_stop="247" r_length="181" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="49573" i_stop="49015" i_length="559">
            <donor d_prob="0.776" d_score="1.00"/>
            <acceptor a_prob="0.985" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="49014" g_stop="48881" g_length="134"/>
          <reference_exon_boundary r_type="cDNA" r_start="248" r_stop="381" r_length="134" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="48880" i_stop="48133" i_length="748">
            <donor d_prob="0.816" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="48132" g_stop="47692" g_length="441"/>
          <reference_exon_boundary r_type="cDNA" r_start="382" r_stop="822" r_length="441" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0236E02.1" gen_strand="-" ref_id="SGN-E698492" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>822</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0236E02.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E698492" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="49906" e_stop="49841"/>
          <exon e_start="49754" e_stop="49574"/>
          <exon e_start="49014" e_stop="48881"/>
          <exon e_start="48132" e_stop="47692"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGGGTCGAAGGTGGATTTCAAGGCAGGACAAATAAATTAGTCGATGGCTGCTATTCCTTTTGGCAGGTGACTACCAGTTTTACCTTTATGTCCTGAACTCTTCCATTTCCAGTTTAATTATTACTGAGCTAAAGATGACTTTGATTGATCAGGGCGCGGTAGTGTTTCTTATACAAAGACTAAATTTGATAGTCCATGAACAACTAGGGCTGTCAAATGACCTCAGTACAGAAAGTGCTGATGATTCTTCAGAGTCAGAGTTATCTGATGAAGAAGAGCATTTGGAAGGGATATCCTCTCATGTTCAGGATACTTTCCCTCTTGGACAAGCAGGTATGTCAATTTGAGGAACAATAGTTCAAAAGGCCAAAAAGAAAGTACCACTGTGTGATTCACTGGTCTGTTTGTTGCAGTGCTATTCAACTTTGTCCTTGGATCTGAATTAAATAGAGCATATCATGTTATAACGGAATCCAGTGGGTGGAATTTAATAAATGAAGGATGAAAAGAATATATTCCATCTTAAACCACTTCTCTTGTCACAGAAGTGGCACTTGGATTGTATATGAACTTGATATCTCCAGATGGTCAGGTAGTTAGTAACCTATAGTGCTATCAGCTGAACTTCACCTTAACTAGTTACCATATGTTGGATTCTTCAAACAATGTATGTGTAAAAGTTGGATTATCAAAATGGGTTGTATGTCCCTTACTCTGATCCATTTGTCCATTTGACGGTGTACCGAGATTGTTTAGTAGAGCATTTCATTGGAAGTTTGAAACTCTGACAGCTCCTAATATTTCTATCCAGATTCTTTGTGTTGTCTAGATCTTTCTTTCTTTTAGGTCTTATCACAATTACTTTCTAATCACATCATTTCATTTTTCTTAGGTGCTTGTCAAGAAAATGCTTCTCATAGCCCAAAAATAGCAGATACTGGATATGAGTTTATCAACCGACCCATAGCTATGAGGCCTCTCTTTGACAGCATGTATCTGCAGCAATATGTTCTTCTTTGCTCTCAGGTGCTTAAATTTTCGAGAAAATATATTCTGAAGATCCCTGTTCACTCTTGCATGTCCCTTGCTTTGGTGTAGGATTGTAATGCATATGCACAGCAGCACAAGCTGGAAAATAAGGGATGAAGAAAAAATCTCAAGAAAATTATAATCGTATAAGAAGCTAAGATTTTGTTTATAAAATTTGTAACATCACTGAAAATGCATATGAGAAACTGGTTTATTTGAGCTTCTAGGCCCTACATAGTTTAAAGAAATAAGTAAATTATATCGGGTTTCTCTCCTAATCTCGTCTGAAGATGGAATTGTTGTCTGATTTTGGAGCATCACTAAAACCACACCGTTCTTGTTAGAACATCTTGAATATCATTCATCTGCTGGGCATCATTATTTCTCCATTAACATATAAATTCAAGAGCCTTTAAAAGGCATGTGTATTTGATATAATGTTCTTTTTTGAATTTGTTGGCAACATGAAGTCGTGTACTAATCATCCTCTTAATTGGTGTTGGATTCAACAGCTTTATTTTGCATTCTTTTCATAATCAGAGTTCAATTTTCTTGTGTATAATTGGTAACTATTTATTCATTCTTCCAAGGGAAAAAGAAAGTTAAGTGGGTTTTAAATATTCTATATCAGATGCTGCGACTCACCAAGATATTAGTGTTTAGTTTCTTTTGGCAGTTTGTTATTCCTGTTTCTATTGCTTTTATATCTTTTTCAAGATTCTAATATATCATGTTGTGGATGTAGATTGAAGTTGGTGGTTTCAGAGACAAACCTGGGAAGGGTAGAGACTACTACCATACCTGTTACTGTTTAAGTGGTCTTTCAATTGCTCAGTATAGCTGGACCGACGAAGCTGATTCTCCACCATTACCCAGGGATGTATTTGGTCCTTATTCCAAATGTCTGTTGGAACAGGTTCACCCACTCTTCAACGTAGTGTTGGATCGGTATTATGAAGCTCGCGAATACTTCTCAGGCTTGTGAGACTGTTTCACCACTTTCATTAGCACCAACTTTTTCAGAAACTTAGTTGCAATCCAGAAGTTAAAAGTGTCATTGGGTTCAAAAGAGTTGTGATCGTTTATGTACAATATCCTTGCATTTGTATACGTGATACAAGTTGAGAGAATAACGGGTACTTTCTGAACTTGCTGAACTAGCACTAAATTCGTCTCTGTTTAGTGA</genome_strand>
        <mrna_strand>CCGGTCGAAGGTGGATTTCAAGGCAGGACAAATAAATTAGTCGATGGCTGCTATTCCTTTTGGCAG......................................................................................GGCGCGGTAGTGTTTCTTATACAAAGACTAAATTTGATAGTCCATGAACAACTAGGGCTGTCAAATGACCTCAGTACAGAAAGTGCTGATGATTCTTCAGAGTCAGAGTTATCTGATGAAGAAGAGCATTTGGAAGGGATATCCTCTCATGTTCAGGATACTTTCCCTCTTGGACAAGCAG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGCTTGTCAAGAAAATGCTTCTCATAGCCCAAAAATAGCAGATACTGGATATGAGTTTATCAACCGACCCATAGCTATGAGGCCTCTCTTTGACAGCATGTATCTGCAGCAATATGTTCTTCTTTGCTCTCAG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTGAAGTTGGTGGTTTCAGAGACAAACCTGGGAAGGGTAGAGACTACTACCATACCTGTTACTGTTTAAGTGGTCTTTCAATTGCTCAGTATAGCTGGACCGACGAAGCTGATTCTCCACCATTACCCAGGGATGTATTTGGTCCTTATTCCAAATGTCTGTTGGAACAGGTTCACCCACTCTTCAACGTAGTGTTGGATCGGTATTATGAAGCTCGCGAATACTTCTCAGGCTTGTGAGACTGTTTCACCACTTTCATTAGCACCAACTTTTTCAGAAACTTAGTTGCAATCCAGAAGTTAAAAGTGTCATTGGGTTCAAAAGAGTTGTGATCGTTTATGTACAATATCCTTGCATTTGTATACGTGATACAAGTTGAGAGAATAACGGGTACTTTCTGAACTTGCTGAACTAGCACTAAATTCGTCTCTGTTTAGTGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0236E02-u8qcS/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E344965" ref_strand="+" ref_description="SGN-E344965 [cTOF-22-I4]">
      <seq>gtcgaaggtggatttcaaggcaggacaaataaattagtcgatggctgctattccttttggcagggcgcggtagtgtttcttatacaaagactaaatttgatagtccatgaacaactagggctgtcaaatgacctcagtacagaaagtgctgatgattcttcagagtcagagttatctgatgaagaagagcatttggaagggatatcctctcatgttcaggatactttccctcttggacaagcaggtgcttgtcaagaaaatgcttctcatagcccaaaaatagcagatactggatatgagtttatcaaccgacccatagctatgaggcctctctttgacagcatgtatctgcagcaatatgttcttctttgctctcagattgaagttggtggtttcagagacaaacctgggaagggtagagactactaccatacctgttactgtttaagtggtctttcaattgctcagtatagctggaccgacgaagctgattctccaccattacccagggatgtatttggtccttattccaaatgtctgttggaacaggttcacccactcttcaacgtagtgttggatcggtattatgaagctcgcgaatacttctcaggcttgtgagactgtttcaccactttcattagcaccaactttttcagaaacttagttgcaatccagaagttaaaagtgtcattgggttcaaaagagttgtgatcggttatgtacaatatccttgcatttg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0236E02-u8qcS/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0236E02.1" temp_strand="-" temp_description="C02HBa0236E02.1  AC215430.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0236E02 sequenced_by:kribb upload_account_name:korea">
        <position start="50203" stop="47472"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="49903" g_stop="49841" g_length="63"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="63" r_length="63" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="49840" i_stop="49755" i_length="86">
            <donor d_prob="0.992" d_score="1.00"/>
            <acceptor a_prob="0.919" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="49754" g_stop="49574" g_length="181"/>
          <reference_exon_boundary r_type="cDNA" r_start="64" r_stop="244" r_length="181" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="49573" i_stop="49015" i_length="559">
            <donor d_prob="0.776" d_score="1.00"/>
            <acceptor a_prob="0.985" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="49014" g_stop="48881" g_length="134"/>
          <reference_exon_boundary r_type="cDNA" r_start="245" r_stop="378" r_length="134" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="48880" i_stop="48133" i_length="748">
            <donor d_prob="0.816" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="48132" g_stop="47772" g_length="361"/>
          <reference_exon_boundary r_type="cDNA" r_start="379" r_stop="739" r_length="361" r_score="0.997"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0236E02.1" gen_strand="-" ref_id="SGN-E344965" ref_strand="+">
        <total_alignment_score>0.999</total_alignment_score>
        <cumulative_length_of_scored_exons>739</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0236E02.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E344965" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="49903" e_stop="49841"/>
          <exon e_start="49754" e_stop="49574"/>
          <exon e_start="49014" e_stop="48881"/>
          <exon e_start="48132" e_stop="47772"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTCGAAGGTGGATTTCAAGGCAGGACAAATAAATTAGTCGATGGCTGCTATTCCTTTTGGCAGGTGACTACCAGTTTTACCTTTATGTCCTGAACTCTTCCATTTCCAGTTTAATTATTACTGAGCTAAAGATGACTTTGATTGATCAGGGCGCGGTAGTGTTTCTTATACAAAGACTAAATTTGATAGTCCATGAACAACTAGGGCTGTCAAATGACCTCAGTACAGAAAGTGCTGATGATTCTTCAGAGTCAGAGTTATCTGATGAAGAAGAGCATTTGGAAGGGATATCCTCTCATGTTCAGGATACTTTCCCTCTTGGACAAGCAGGTATGTCAATTTGAGGAACAATAGTTCAAAAGGCCAAAAAGAAAGTACCACTGTGTGATTCACTGGTCTGTTTGTTGCAGTGCTATTCAACTTTGTCCTTGGATCTGAATTAAATAGAGCATATCATGTTATAACGGAATCCAGTGGGTGGAATTTAATAAATGAAGGATGAAAAGAATATATTCCATCTTAAACCACTTCTCTTGTCACAGAAGTGGCACTTGGATTGTATATGAACTTGATATCTCCAGATGGTCAGGTAGTTAGTAACCTATAGTGCTATCAGCTGAACTTCACCTTAACTAGTTACCATATGTTGGATTCTTCAAACAATGTATGTGTAAAAGTTGGATTATCAAAATGGGTTGTATGTCCCTTACTCTGATCCATTTGTCCATTTGACGGTGTACCGAGATTGTTTAGTAGAGCATTTCATTGGAAGTTTGAAACTCTGACAGCTCCTAATATTTCTATCCAGATTCTTTGTGTTGTCTAGATCTTTCTTTCTTTTAGGTCTTATCACAATTACTTTCTAATCACATCATTTCATTTTTCTTAGGTGCTTGTCAAGAAAATGCTTCTCATAGCCCAAAAATAGCAGATACTGGATATGAGTTTATCAACCGACCCATAGCTATGAGGCCTCTCTTTGACAGCATGTATCTGCAGCAATATGTTCTTCTTTGCTCTCAGGTGCTTAAATTTTCGAGAAAATATATTCTGAAGATCCCTGTTCACTCTTGCATGTCCCTTGCTTTGGTGTAGGATTGTAATGCATATGCACAGCAGCACAAGCTGGAAAATAAGGGATGAAGAAAAAATCTCAAGAAAATTATAATCGTATAAGAAGCTAAGATTTTGTTTATAAAATTTGTAACATCACTGAAAATGCATATGAGAAACTGGTTTATTTGAGCTTCTAGGCCCTACATAGTTTAAAGAAATAAGTAAATTATATCGGGTTTCTCTCCTAATCTCGTCTGAAGATGGAATTGTTGTCTGATTTTGGAGCATCACTAAAACCACACCGTTCTTGTTAGAACATCTTGAATATCATTCATCTGCTGGGCATCATTATTTCTCCATTAACATATAAATTCAAGAGCCTTTAAAAGGCATGTGTATTTGATATAATGTTCTTTTTTGAATTTGTTGGCAACATGAAGTCGTGTACTAATCATCCTCTTAATTGGTGTTGGATTCAACAGCTTTATTTTGCATTCTTTTCATAATCAGAGTTCAATTTTCTTGTGTATAATTGGTAACTATTTATTCATTCTTCCAAGGGAAAAAGAAAGTTAAGTGGGTTTTAAATATTCTATATCAGATGCTGCGACTCACCAAGATATTAGTGTTTAGTTTCTTTTGGCAGTTTGTTATTCCTGTTTCTATTGCTTTTATATCTTTTTCAAGATTCTAATATATCATGTTGTGGATGTAGATTGAAGTTGGTGGTTTCAGAGACAAACCTGGGAAGGGTAGAGACTACTACCATACCTGTTACTGTTTAAGTGGTCTTTCAATTGCTCAGTATAGCTGGACCGACGAAGCTGATTCTCCACCATTACCCAGGGATGTATTTGGTCCTTATTCCAAATGTCTGTTGGAACAGGTTCACCCACTCTTCAACGTAGTGTTGGATCGGTATTATGAAGCTCGCGAATACTTCTCAGGCTTGTGAGACTGTTTCACCACTTTCATTAGCACCAACTTTTTCAGAAACTTAGTTGCAATCCAGAAGTTAAAAGTGTCATTGGGTTCAAAAGAGTTGTGATCGTTTATGTACAATATCCTTGCATTTG</genome_strand>
        <mrna_strand>GTCGAAGGTGGATTTCAAGGCAGGACAAATAAATTAGTCGATGGCTGCTATTCCTTTTGGCAG......................................................................................GGCGCGGTAGTGTTTCTTATACAAAGACTAAATTTGATAGTCCATGAACAACTAGGGCTGTCAAATGACCTCAGTACAGAAAGTGCTGATGATTCTTCAGAGTCAGAGTTATCTGATGAAGAAGAGCATTTGGAAGGGATATCCTCTCATGTTCAGGATACTTTCCCTCTTGGACAAGCAG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGCTTGTCAAGAAAATGCTTCTCATAGCCCAAAAATAGCAGATACTGGATATGAGTTTATCAACCGACCCATAGCTATGAGGCCTCTCTTTGACAGCATGTATCTGCAGCAATATGTTCTTCTTTGCTCTCAG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTGAAGTTGGTGGTTTCAGAGACAAACCTGGGAAGGGTAGAGACTACTACCATACCTGTTACTGTTTAAGTGGTCTTTCAATTGCTCAGTATAGCTGGACCGACGAAGCTGATTCTCCACCATTACCCAGGGATGTATTTGGTCCTTATTCCAAATGTCTGTTGGAACAGGTTCACCCACTCTTCAACGTAGTGTTGGATCGGTATTATGAAGCTCGCGAATACTTCTCAGGCTTGTGAGACTGTTTCACCACTTTCATTAGCACCAACTTTTTCAGAAACTTAGTTGCAATCCAGAAGTTAAAAGTGTCATTGGGTTCAAAAGAGTTGTGATCGGTTATGTACAATATCCTTGCATTTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0236E02-u8qcS/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E431102" ref_strand="+" ref_description="SGN-E431102 [STM-54-N6]">
      <seq>gatattgtactataaacgattacaagaacccagtgactcttttagctctggatgcacctacgtttctgaaaagttggtgctaatgaaagtggtgaaacattctcacaagcctgagaagtatttgcgagcttcataataccgatccaactctacgttgaagagtgggtgaacctgttccaacagacatttggaataaggaccaaatacatccctgggtaatggtggagaatctgcttcgtcggtccagctatactgagcaattgaaagaccacttaaacagtaacacgtatgatagtagtctctacccttcccaggtttgtctctgaaaccacctacttcaatctggg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0236E02-u8qcS/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0236E02.1" temp_strand="+" temp_description="C02HBa0236E02.1  AC215430.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0236E02 sequenced_by:kribb upload_account_name:korea">
        <position start="47513" stop="48434"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="47782" g_stop="48137" g_length="356"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="347" r_length="347" r_score="0.921"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0236E02.1" gen_strand="+" ref_id="SGN-E431102" ref_strand="+">
        <total_alignment_score>0.921</total_alignment_score>
        <cumulative_length_of_scored_exons>356</cumulative_length_of_scored_exons>
        <coverage percentage="1.026" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0236E02.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E431102" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="47782" e_stop="48137"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GATATTGTAC-ATAAACGATCACAACTCTTTTGAACCCAATGACACTTTTAACTTCTGGATTGCAACTAAGTTTCTGAAAAAGTTGGTGCTAATGAAAGTGGTGAAACAGTCTCACAAGCCTGAGAAGTATTCGCGAGCTTCATAATACCGATCCAACACTACGTTGAAGAGTGGGTGAACCTGTTCCAACAGACATTTGGAATAAGGACCAAATACATCCCTGGGTAATGGTGGAGAATCAGCTTCGTCGGTCCAGCTATACTGAGCAATTGAAAGACCACTTAAACAGTAACAGGTATGGTAGTAGTCTCTACCCTTCCCAGGTTTGTCTCTGAAACCACCAACTTCAATCTACA</genome_strand>
        <mrna_strand>GATATTGTACTATAAACGATTACAA-------GAACCCAGTGACTCTTTTAGC-TCTGGAT-GCACCTACGTTTCTGAAA-AGTTGGTGCTAATGAAAGTGGTGAAACATTCTCACAAGCCTGAGAAGTATTTGCGAGCTTCATAATACCGATCCAACTCTACGTTGAAGAGTGGGTGAACCTGTTCCAACAGACATTTGGAATAAGGACCAAATACATCCCTGGGTAATGGTGGAGAATCTGCTTCGTCGGTCCAGCTATACTGAGCAATTGAAAGACCACTTAAACAGTAACACGTATGATAGTAGTCTCTACCCTTCCCAGGTTTGTCTCTGAAACCACCTACTTCAATCTGGG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0236E02-u8qcS/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E450077" ref_strand="+" ref_description="SGN-E450077 [cSTS-8-G6]">
      <seq>cctcgtgccgcgctgacgaaatttacagtcagagtagtaatcggttgtagtgaaaaaatggagtcgaggaaagtgacgaagacgctggaagatcaatgggtggtggagcgtcgagtccgagagatatacgattatttctacagcatttcccccaattccctgtccgacctcatagagctggaacgtgacaaacacttcgattatcttagccaaggtctcagaaaacttggtccgtcgttttccgttttggatgccagtcgaccatggctttgctactggatacttcattcaattgctttgttgggagaatctattgatgccaaactggaaaatgatgcgactgactttctgacccgttgccaggataaagatggtggctatggaggtggacctggtcagatgcctcatcttgcaactacttatgctgcagtcaattcactcataactttgggcaaacctgaagctctgtcatcaattaatagagaaaaattgtacacatttttgctgcgaatgaaagacgcaagtggtggattcaggatgcatgatggtggagaagtagatgttcgtgcctgttatactgccatttctgttgcaaatatattaaacattgtggatgacgagctgattcatggtgttggaaattacatcctaagttgtcagacttatgaaggtggaattgctggcgaaccaggttctgaagctcatggtgggtatactttctgtgggttggctgcaatgattctgatcaacgaagtgaatcgattggacttgccaggtttacttga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0236E02-u8qcS/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0236E02.1" temp_strand="-" temp_description="C02HBa0236E02.1  AC215430.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0236E02 sequenced_by:kribb upload_account_name:korea">
        <position start="59877" stop="52798"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="59588" g_stop="59417" g_length="172"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="170" r_length="170" r_score="0.930"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="59416" i_stop="59314" i_length="103">
            <donor d_prob="0.960" d_score="0.94"/>
            <acceptor a_prob="0.965" a_score="0.92"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="59313" g_stop="59227" g_length="87"/>
          <reference_exon_boundary r_type="cDNA" r_start="171" r_stop="257" r_length="87" r_score="0.954"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="59226" i_stop="58046" i_length="1181">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.593" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="58045" g_stop="57940" g_length="106"/>
          <reference_exon_boundary r_type="cDNA" r_start="258" r_stop="363" r_length="106" r_score="0.943"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="57939" i_stop="56816" i_length="1124">
            <donor d_prob="1.000" d_score="0.92"/>
            <acceptor a_prob="0.999" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="56815" g_stop="56780" g_length="36"/>
          <reference_exon_boundary r_type="cDNA" r_start="364" r_stop="399" r_length="36" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="56779" i_stop="56141" i_length="639">
            <donor d_prob="0.894" d_score="0.00"/>
            <acceptor a_prob="0.975" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="56140" g_stop="56058" g_length="83"/>
          <reference_exon_boundary r_type="cDNA" r_start="400" r_stop="482" r_length="83" r_score="0.988"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="56057" i_stop="55977" i_length="81">
            <donor d_prob="0.533" d_score="0.98"/>
            <acceptor a_prob="0.738" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="55976" g_stop="55923" g_length="54"/>
          <reference_exon_boundary r_type="cDNA" r_start="483" r_stop="536" r_length="54" r_score="0.981"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="55922" i_stop="55438" i_length="485">
            <donor d_prob="0.993" d_score="0.98"/>
            <acceptor a_prob="0.981" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="55437" g_stop="55386" g_length="52"/>
          <reference_exon_boundary r_type="cDNA" r_start="537" r_stop="588" r_length="52" r_score="0.981"/>
        </exon>
        <intron i_serial="7">
          <gDNA_intron_boundary i_start="55385" i_stop="54759" i_length="627">
            <donor d_prob="0.996" d_score="0.98"/>
            <acceptor a_prob="0.984" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="8">
          <gDNA_exon_boundary g_start="54758" g_stop="54694" g_length="65"/>
          <reference_exon_boundary r_type="cDNA" r_start="589" r_stop="653" r_length="65" r_score="1.000"/>
        </exon>
        <intron i_serial="8">
          <gDNA_intron_boundary i_start="54693" i_stop="53379" i_length="1315">
            <donor d_prob="0.496" d_score="1.00"/>
            <acceptor a_prob="0.987" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="9">
          <gDNA_exon_boundary g_start="53378" g_stop="53322" g_length="57"/>
          <reference_exon_boundary r_type="cDNA" r_start="654" r_stop="710" r_length="57" r_score="1.000"/>
        </exon>
        <intron i_serial="9">
          <gDNA_intron_boundary i_start="53321" i_stop="53172" i_length="150">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.962" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="10">
          <gDNA_exon_boundary g_start="53171" g_stop="53099" g_length="73"/>
          <reference_exon_boundary r_type="cDNA" r_start="711" r_stop="783" r_length="73" r_score="0.986"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0236E02.1" gen_strand="-" ref_id="SGN-E450077" ref_strand="+">
        <total_alignment_score>0.965</total_alignment_score>
        <cumulative_length_of_scored_exons>785</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0236E02.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E450077" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="59588" e_stop="59417"/>
          <exon e_start="59313" e_stop="59227"/>
          <exon e_start="58045" e_stop="57940"/>
          <exon e_start="56815" e_stop="56780"/>
          <exon e_start="56140" e_stop="56058"/>
          <exon e_start="55976" e_stop="55923"/>
          <exon e_start="55437" e_stop="55386"/>
          <exon e_start="54758" e_stop="54694"/>
          <exon e_start="53378" e_stop="53322"/>
          <exon e_start="53171" e_stop="53099"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CGTTGATTTGTCGCTGACGAAATTTACAGTCAAGAGTAGTAACCGGTTGTAGTGAAAAAATGGAGTCGAGGAAAGTGACGAAGACGCTGGAAGATCAATGGGTGGTGGAGCGTCGAGTCCGAGAGATATACGATTATTTCTACAGCATTTCCCCCAACTCTCCGTCCGACCTGTTAGCTCTCAACCTTTTTCAATTTCTAGGGTTCTTATTCCTTTATTCATCAACTTATTTTTGTGTTGATTTCTTTCTTTCTTTCTTTCTTTCTGTTATAAAGCATAGAGATCGAACGTGACAAACACTTCGGTTATCTAAGCCAAGGTCTCAGAAAACTTGGTCCGTCGTTTTCCGTTTTGGATGCCAGGTAAGTTCCCTCTATCTTTGATCGTTTCTCACCACTAGTTCACTTGTGATGTTGAAGATTCCAATTTTAACTGGTGGCTAATTGGAAAACAAAATTAAAATTTCGTATTATGAATTCAATGTGCTTTAAAAGGAAAATTATTTAGTATTGGAATGGAATTGACTTGAATGAAGTAATGTCTTAGTTAATATAACTTTATATAGCTGATCTCAACTTATTTGGGAGCTAGTCTATTGATTGATTGAGTGACTTTTTAGGAAGAAAAGAACATTGTTTGCAAGATTCAATCGTAATGAGAGAGTTGAGATTCTATGGTAACGAGAGGAAAGAACTAAACAAGCTAACGTGGATGAATATTGACCTTCAAATAAACTCTCTCCAAGCATCCACCCAAGAGTGCAGTCTAGTGGTTAATGAACTAGGTCGAGAATCACGAGGTCTCAAATTCAAAGGCAAAAGGTTAGGTGAGTTCTTCCCAAGTTCTTATACTGTCCATGTATTGAGGGACAGAGTTACCCACTATCTATGCTAGTGGGAGGTAGGACGTACCACGTGGAAATAATCGAGTTGAGCACTCCATAGTTACAAAAAATAAAAATAAAGCTCTCTCCAATGATTAGTTACATACAACATATTTGGATTGGTATAAGTTTCATAATGACTAATCTTGTCAGTGTAGGACACACTAAGGTTTTCTTCTTTTCCATTTTCTCGTGGGGGATCACAATGTTGTCCAACCAACTTGCTCATACCTCGACTAATGGATTGAAACATGCTATCTCTCACTAGCACATGTGCTATCTACCATGGGGTTTGGAACTTTGGTGTATCAGGTTCATCTGAACCCAATAAAATTCAATGTTGGGCATAAATCTGTGTGTAAATTTTTCATGGAATTACAATAAATAGTATATATGAAAGCATAAATTTTATAAATATAATGGGTTCAACAATAAAACTTGAGGGGAAGAATTCTGTGGTCTCCCATTCCCAATGTCCATTCAAACTTCATTAAGTCATGCCCTTTGGTTCCCTTTCCCATACCTCACCAACATAATATAAAAGTTTGGAAAATGTGTTCATCAAGATGGGATCTTGGCGTCTATTCTAGTCCAATGGAACCAAAGGCTATTTTGTTAACATCAACTATTTCTATGCCTTACTTAAGTTTTTCTTTCTAGTCGACCATGGCTTTGCTACTGGACACTTCATTCAATCGCTTTGTTGGGAGAATCTATTGGTGGCAAACTGGAAAATGATGCAATTGACTTTCTGACCCGTTGCCAGGTTTGTTCATTTTGTATTCTGCTGGTTATGTATCTATGTCTTTCTTTAAAAAGAATTGTGTAGGGATTTAGTGTATTTGTTTTTAGGGTGGGTTCAGAGCAAGCTAATAGGATCACTTTCACTGAGGAAAACTTATGTGTAATGAATCACCTTTTTTGTTTGTTTTAGGACCATACTGTGCTACAAGAGCATGATATATATAACAGCAGGCTTTTTTTTACATATTGAGCAGGAGTTTCTTGTGGTGATAAAAGTGAGTTTGAAGCATTAAACTTAGAGAAATTGTTTTACCTCCCAGATTTTGAAGTTAAAACCTGAAAATTTGAGTTTTTGAAATTGTGATTTTTGGAACTTGAAGTTGTGCTTATACATGCATATTACTTGGAAAATTTGAAACTTTTGTGAGTAAAAGTGAATTTCTCCCAAAACTGGTCTGGACCAGCTTTTGGAACTTGATATTTTTTTGAAGACAGATTTTCAAAATTTGATTGAATATCTATGGCCAAACAGATATTTTAAGACAAGTGTTCTAAGCAGAAAAGGCTACTACTAAAGTACATGCTATATTCTAAGTGCCCAGTTACGTCTTGCTTAGGGATGACAACTTTAATAGGCTTCAGCTACTGTACAAAACTCAAGTCTCTGTAGACTTCTCAAAGATATGGTAGACTTTATAACAAACTTCAAGAGGCTTTCCACCAAGGACTTTATTGTGGTTCTTATGAACTAAAATTGGGACTACTTGTATTCATCTCTGTACTATTGCTTAGACATTGTAATCATAAAGAGTTATAGACCAGTGCGCATGATTGATTGTGTTTAGGAGTGACTAATAATGATGCATGGAGAAAAGATTCCGTAGTGATATTCGAGCCTAGTTATAGAAATGTGATATACATGGTGAGTAGAATGTCATCCCAAATTATTGTTATTACCATATTTGCTTAAAAGATAATTTATTGTATTTATGATATGTTTAATCATCCACCTTTCCAGAATACTGGTGTAACTGTCCTTTTTTTTTTCTTGCCTGCGATTCTAGCTAATTTGTTTTTGGACTTCTCGTTCAATAAAATGCGGTAAGATTTAGTTTCATGTGTTGTTTACTGTTACCTTCCTCACAGGATAAAGATGGTGGCTATGGAGGTGGACCTGGTCAGGCAAGTCAAATTCTCCCACTCCAGTCTTAGTGCCGTTAAATCAGATTTGTGTCAGATTCTTCATGCTTATTTTCACATTGAGTTTGATTATCTGATGTCTTCAATTGTTTTTAATATGCAGTATGCTGCTTTATTTTGTGATGATGGTTGATTTGAATATTGTAAATTTGTTAACTCTATAATTCTGTTGGAGGACTTATAATTAAAAGATAATTCTATTAGAGGGAAATAGTCATCTGTATTGATATGCATTTAACTATTGGCATGGTCAGTGGTTTGAGCTTGGGACTTCCACGTTGGAGGTATCCAGTTCGAAACGGAAACGCCTTGCCAGCGAAAGCAAGGGGTTTGCCTTCTGGGTCGAGCTCGCATGGTGCGAGTTACCTCTCCTATGTAGTTTGCGAGCTATTGCATAGGAGCGGGGTTTTACCCTTGTCATTAAAAAAAAAAAGACTATTGGCCTGGTTCTTGTTCTTTTATAAGTTAGCTTGAAACTCTTTTTCTGTTTCTTTTAGAATCACAAATTTAACAGTTCCAAGCTTCGTTTATTCTGGTCAACCTGTTAATTTTATACAGTTCTTGTGCTTCTTATCATTAAGGTTCTTTGAAGTAATACTTGTATTGTATTGCTTTTTTCAGATGCCTCATCTTGCAACTACTTATGCTGCAGTCAATTCACTAATAACTTTGGGCAAACCTGAAGCTCTGTCATCAATTAATAGGTGCACAAGCTATAGTATGTTTTTGTTGGTGTCTTATCTATTGTTCATTCCTGTTGACATTGATCTAGTAATATGCCTCAGAGAAAAGTTGTACACATTTTTGCTGCGAATGAAAGACGCAAGTGGTGGATTCAGGTAGGATGCTTTCTACTTGTTTACATTATTTGATCAGCTCCCCAATTCATGTCTTCCCTTGTATCTCATTCCTAGTCTGCTGTATTTATCTACTATCAGTTTCTAAAAAAAATCTAGGTGCTTTTCTTTCTATTTGTAACTTGTTTATCCATTTTAAATTTGCCATCTCTATGTTGTATGTGCTAATGTTTTCCATTACTACTGATTCTCCTGATTAATCCTACCTGCTAATTTTGTTATGTTTTCCTTCTGAGGAGAACTAGACTTTTGGGTGAACTAGCACTGTAGTTGACACTTTTACCCTGATCTGTAAATGTATAAATATTTGTGTGTGTATTCTTGAGTTTGTAGATCCAAGTGTATTTAACGAACAGCATCTGAGAGATCACTTGTTTCTAGCATTTTCTTTCAATATTCAAGTTTCCTCAAAAATGACTTGCCACTTCCCATCTTTGCTAAGTTCAAACTTCAAATATTATCTGCAGGATGCACGATGGTGGAGAAGTAGATGTTCGTGCCTGTTATACTGCCATTTCTGTAAGTGTGATCTCCTTGTGATCTGAGTTCTGGTCATATTTTCATTATTTTGCTGCACTTGGATGGAAGACTCTGAGATAAGCTTTAAGCAAATATAATTTTCTTATTGATGAATCATGCAAGCTACGTATGTGAAACTTATCCTTCGGGGTGGCCTAGTGGCTTGGGCTTGGGACTTCCATGTTGGAGGTCTCAAGTTCGAAACCTTGCCAGCGAAAGTAAGGGGTTTTGCCTTCTTGTTTGAGCTTGTTGCACCGGGCTTGCCTAGTGCAGCTTACCTCTCTTATGTGGTTTGCGAGCTATTGCATAAGAGCGGGGGTTTTACCCTGTGCGCACCCAAAGGGTAGTGGTTGCGGGTTTCCCTTGTCATAAAAAAAATTAAAAATATGTGAAACTTAACCGTCTCTTTAGTTTTTTGAAAATAAATTAGATTCGAACATTTCCCGAATTTCATTCACGAGGCAATCAAAGCCTTCTGATACACGCCTCTCTTGCAAATCGTATAGATATTTTATACTTTATTACATACACATTTCTTGCATGTTACATTCTCAAGTTTGACGTTTTTCTTCTTAATTGTCTTTGGAATAATGTGCTTTCATGTTAATTGATACATTAGTTTCTTAGGTTGCAAATATATTAAACATTGTGGATGACGAGCTGATTCATGGTGTTGGAAATTACATCCTAAGGTTGGTTTGAGATGCGCACTCATCTGCTACAGCTTATTCAACTCTCTCTTTATGTATACCGTATTCATACTCAAGCTGTAATATCTCTTTTTGATTTACTAGTGTAGTTGTCTTCCAAGAGAAATTACACGAAATTAAAAGAGCATGGCAGAAATTTGGGAGTTTTAGAGGAGTGTAATCTGATAAAAAGATAACTATCAGAAAAGAAAGCAAGTTATATTACAAATGGTTGTGAGACTAGCGATAATACGTGAGTGATTGTTTTCTATAAAACCCAACATGTTCACTAGTTAACTGTCATGAATTATAGATGTTAATATGGATATTTGGTCATACAAGCTTGAAAATCAGATTGGAAATGCTCACCTCCAACAAAAGACGCAACAAGATAGCACGCATAGAGGATCATGAGTGAAGATTTGTCGAAATGGTTTAATTATGTTTACATTAACCTTCGAATATACCAGACTAGGTACAATACTGGAATAATTGAAGTTGCTATAAAGGCAACGAGGTAGATTCTAAATTACATGAAGAAAAACTGTTTAAAGACCTACAATCACCCAAAAGCCATTACATCAATTAGTTGAGATTAAGGAAAAGAAAAGAATTAGTTGTTGTTAAACTTACATTAGGTTGTGTTTGCCAGAGGTCCTTTTGTGTGGTAAGTTATATGTTTATGGCAGAGCAGGTGTGAGATTTTAAGAACTAATATATCTTAAAGGCAAAATATTGAGTATTGGGATGACACAAAGTAATGGATTTGGAGTATTCATATTACTGTCACCAACTAGTCAGTGCATGTTGACTAGTTAATTATACATACTAAATGCATGACCGAAGCTGGTACTTAAGTTGCATTGAAGGGTTTCTTTGAGATTCGATCCCATTGGTAAGAGAACAATTTTCCAAGTATCATTTCAGAACGATGTTATGTTTGAATATTCATGGCTCTGAGTTGATGACAGCCTCCATTTGTCAGGGATTAAAATATGAGAGATAAGTGATGTTTCCTAATTCTTGCCATCTGAGAAAGTTGAAAGTCCTTGAATAAAAATTGATGAAGGAACTATTCTTTTATTCTAGTTTGTTCTTATTCTTGTTCTCTGAAGTTCTTGATTTAATCCTAGTCTCATCATAAGAATTATTTAGCTAGGATAAATAAGAATTTATTCTATTTAGTGTCAGAAATACAAGATAAGAAGCAGGTGGCAGATCTTTCTTTTCCTTAATGTCCCTCATTTTTTGTTTGAAATATTAAGAATGTATTTTCATGGATAAGCCTTTCCTAAGCTGTTCTCCGTTTTTGCTTCAGTTGTCAGACTTATGAAGGTGGAATTGCTGGCGAACCAGGTTCTGAAGCTCATGGTGGGTAAGTCTCACGTTGGAGATATTCTCATCTTTCTAATCTTGTTTCGCTCTTTTTCTTATAGTTCTCTTTCAATGTTAGTTGCCGTAGTAGAACTATCACTTCTCAGCTTATGATGTTACTGAAGCCCTTTACATTTAACTCATTTTCTAGGTATACTTTCTGTGGGTTGGCTGCAATGATTCTGATCAACGAAGTGAATCGATTGGACTTGCCAGGTTTAATT</genome_strand>
        <mrna_strand>CCTCG-TGCCGCGCTGACGAAATTTACAGTC-AGAGTAGTAATCGGTTGTAGTGAAAAAATGGAGTCGAGGAAAGTGACGAAGACGCTGGAAGATCAATGGGTGGTGGAGCGTCGAGTCCGAGAGATATACGATTATTTCTACAGCATTTCCCCCAATTCCCTGTCCGACCT.......................................................................................................CATAGAGCTGGAACGTGACAAACACTTCGATTATCTTAGCCAAGGTCTCAGAAAACTTGGTCCGTCGTTTTCCGTTTTGGATGCCAG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCGACCATGGCTTTGCTACTGGATACTTCATTCAATTGCTTTGTTGGGAGAATCTATTGATGCCAAACTGGAAAATGATGCGACTGACTTTCTGACCCGTTGCCAG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATAAAGATGGTGGCTATGGAGGTGGACCTGGTCAG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATGCCTCATCTTGCAACTACTTATGCTGCAGTCAATTCACTCATAACTTTGGGCAAACCTGAAGCTCTGTCATCAATTAATAG.................................................................................AGAAAAATTGTACACATTTTTGCTGCGAATGAAAGACGCAAGTGGTGGATTCAG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATGCATGATGGTGGAGAAGTAGATGTTCGTGCCTGTTATACTGCCATTTCT...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTGCAAATATATTAAACATTGTGGATGACGAGCTGATTCATGGTGTTGGAAATTACATCCTAAG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTGTCAGACTTATGAAGGTGGAATTGCTGGCGAACCAGGTTCTGAAGCTCATGGTGG......................................................................................................................................................GTATACTTTCTGTGGGTTGGCTGCAATGATTCTGATCAACGAAGTGAATCGATTGGACTTGCCAGGTTTACTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0236E02-u8qcS/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E456720" ref_strand="+" ref_description="SGN-E456720 [cSTS-30-G24]">
      <seq>gagtaaacgagcgttgatttggcgctgacgacatttacagtcagagtagtaatcggttatagtgaaaaaatggagtcgaggaaagtgacgaagacgctggaagatcaatgggtggtggagcgtcgagtccgagagatatacgattatttctacagcatttcccccaattccctgtccgacctcatagagctggaacgtgacaaacacttcgattatcttagccaaggtctcagaaaacttggtccgtcgttttccgttttggatgccagtcgaccatggctttgctactggatacttcattcaattgctttgttgggagaatctattgatgccaaactggaaaatgatgcgactgactttctgacccgttgccaggataaagatggtggctatggaggtggacctggtcagatgcctcatcttgcaactacttatgctgcagtcaattcactcataactttgggcaaacctgaagctctgtcatcaattaatagagaaaaattgtacacatttttgcggcgaatgaaagacacaagtggtggattcaggatgcatgatggtggagaagtagatgttcgtgcctgttatactgccatttctgttgcaaatatattaaacattgtggatgacgagctgattcatggtgttggaaattacatcctaagttgtcagacttttgaaggtggaattgctggcgaaccagggtctgaagctcatg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0236E02-u8qcS/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0236E02.1" temp_strand="-" temp_description="C02HBa0236E02.1  AC215430.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0236E02 sequenced_by:kribb upload_account_name:korea">
        <position start="59899" stop="53026"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="59599" g_stop="59417" g_length="183"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="182" r_length="182" r_score="0.956"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="59416" i_stop="59314" i_length="103">
            <donor d_prob="0.960" d_score="0.94"/>
            <acceptor a_prob="0.965" a_score="0.92"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="59313" g_stop="59227" g_length="87"/>
          <reference_exon_boundary r_type="cDNA" r_start="183" r_stop="269" r_length="87" r_score="0.954"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="59226" i_stop="58046" i_length="1181">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.593" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="58045" g_stop="57940" g_length="106"/>
          <reference_exon_boundary r_type="cDNA" r_start="270" r_stop="375" r_length="106" r_score="0.943"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="57939" i_stop="56816" i_length="1124">
            <donor d_prob="1.000" d_score="0.92"/>
            <acceptor a_prob="0.999" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="56815" g_stop="56780" g_length="36"/>
          <reference_exon_boundary r_type="cDNA" r_start="376" r_stop="411" r_length="36" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="56779" i_stop="56141" i_length="639">
            <donor d_prob="0.894" d_score="0.00"/>
            <acceptor a_prob="0.975" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="56140" g_stop="56058" g_length="83"/>
          <reference_exon_boundary r_type="cDNA" r_start="412" r_stop="494" r_length="83" r_score="0.988"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="56057" i_stop="55977" i_length="81">
            <donor d_prob="0.533" d_score="0.98"/>
            <acceptor a_prob="0.738" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="55976" g_stop="55923" g_length="54"/>
          <reference_exon_boundary r_type="cDNA" r_start="495" r_stop="548" r_length="54" r_score="0.944"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="55922" i_stop="55438" i_length="485">
            <donor d_prob="0.993" d_score="0.94"/>
            <acceptor a_prob="0.981" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="55437" g_stop="55386" g_length="52"/>
          <reference_exon_boundary r_type="cDNA" r_start="549" r_stop="600" r_length="52" r_score="0.981"/>
        </exon>
        <intron i_serial="7">
          <gDNA_intron_boundary i_start="55385" i_stop="54759" i_length="627">
            <donor d_prob="0.996" d_score="0.98"/>
            <acceptor a_prob="0.984" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="8">
          <gDNA_exon_boundary g_start="54758" g_stop="54694" g_length="65"/>
          <reference_exon_boundary r_type="cDNA" r_start="601" r_stop="665" r_length="65" r_score="1.000"/>
        </exon>
        <intron i_serial="8">
          <gDNA_intron_boundary i_start="54693" i_stop="53379" i_length="1315">
            <donor d_prob="0.496" d_score="1.00"/>
            <acceptor a_prob="0.987" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="9">
          <gDNA_exon_boundary g_start="53378" g_stop="53326" g_length="53"/>
          <reference_exon_boundary r_type="cDNA" r_start="666" r_stop="718" r_length="53" r_score="0.962"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0236E02.1" gen_strand="-" ref_id="SGN-E456720" ref_strand="+">
        <total_alignment_score>0.963</total_alignment_score>
        <cumulative_length_of_scored_exons>719</cumulative_length_of_scored_exons>
        <coverage percentage="1.001" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0236E02.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E456720" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="59599" e_stop="59417"/>
          <exon e_start="59313" e_stop="59227"/>
          <exon e_start="58045" e_stop="57940"/>
          <exon e_start="56815" e_stop="56780"/>
          <exon e_start="56140" e_stop="56058"/>
          <exon e_start="55976" e_stop="55923"/>
          <exon e_start="55437" e_stop="55386"/>
          <exon e_start="54758" e_stop="54694"/>
          <exon e_start="53378" e_stop="53326"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAGTAAACGAGCGTTGATTTGTCGCTGACGAAATTTACAGTCAAGAGTAGTAACCGGTTGTAGTGAAAAAATGGAGTCGAGGAAAGTGACGAAGACGCTGGAAGATCAATGGGTGGTGGAGCGTCGAGTCCGAGAGATATACGATTATTTCTACAGCATTTCCCCCAACTCTCCGTCCGACCTGTTAGCTCTCAACCTTTTTCAATTTCTAGGGTTCTTATTCCTTTATTCATCAACTTATTTTTGTGTTGATTTCTTTCTTTCTTTCTTTCTTTCTGTTATAAAGCATAGAGATCGAACGTGACAAACACTTCGGTTATCTAAGCCAAGGTCTCAGAAAACTTGGTCCGTCGTTTTCCGTTTTGGATGCCAGGTAAGTTCCCTCTATCTTTGATCGTTTCTCACCACTAGTTCACTTGTGATGTTGAAGATTCCAATTTTAACTGGTGGCTAATTGGAAAACAAAATTAAAATTTCGTATTATGAATTCAATGTGCTTTAAAAGGAAAATTATTTAGTATTGGAATGGAATTGACTTGAATGAAGTAATGTCTTAGTTAATATAACTTTATATAGCTGATCTCAACTTATTTGGGAGCTAGTCTATTGATTGATTGAGTGACTTTTTAGGAAGAAAAGAACATTGTTTGCAAGATTCAATCGTAATGAGAGAGTTGAGATTCTATGGTAACGAGAGGAAAGAACTAAACAAGCTAACGTGGATGAATATTGACCTTCAAATAAACTCTCTCCAAGCATCCACCCAAGAGTGCAGTCTAGTGGTTAATGAACTAGGTCGAGAATCACGAGGTCTCAAATTCAAAGGCAAAAGGTTAGGTGAGTTCTTCCCAAGTTCTTATACTGTCCATGTATTGAGGGACAGAGTTACCCACTATCTATGCTAGTGGGAGGTAGGACGTACCACGTGGAAATAATCGAGTTGAGCACTCCATAGTTACAAAAAATAAAAATAAAGCTCTCTCCAATGATTAGTTACATACAACATATTTGGATTGGTATAAGTTTCATAATGACTAATCTTGTCAGTGTAGGACACACTAAGGTTTTCTTCTTTTCCATTTTCTCGTGGGGGATCACAATGTTGTCCAACCAACTTGCTCATACCTCGACTAATGGATTGAAACATGCTATCTCTCACTAGCACATGTGCTATCTACCATGGGGTTTGGAACTTTGGTGTATCAGGTTCATCTGAACCCAATAAAATTCAATGTTGGGCATAAATCTGTGTGTAAATTTTTCATGGAATTACAATAAATAGTATATATGAAAGCATAAATTTTATAAATATAATGGGTTCAACAATAAAACTTGAGGGGAAGAATTCTGTGGTCTCCCATTCCCAATGTCCATTCAAACTTCATTAAGTCATGCCCTTTGGTTCCCTTTCCCATACCTCACCAACATAATATAAAAGTTTGGAAAATGTGTTCATCAAGATGGGATCTTGGCGTCTATTCTAGTCCAATGGAACCAAAGGCTATTTTGTTAACATCAACTATTTCTATGCCTTACTTAAGTTTTTCTTTCTAGTCGACCATGGCTTTGCTACTGGACACTTCATTCAATCGCTTTGTTGGGAGAATCTATTGGTGGCAAACTGGAAAATGATGCAATTGACTTTCTGACCCGTTGCCAGGTTTGTTCATTTTGTATTCTGCTGGTTATGTATCTATGTCTTTCTTTAAAAAGAATTGTGTAGGGATTTAGTGTATTTGTTTTTAGGGTGGGTTCAGAGCAAGCTAATAGGATCACTTTCACTGAGGAAAACTTATGTGTAATGAATCACCTTTTTTGTTTGTTTTAGGACCATACTGTGCTACAAGAGCATGATATATATAACAGCAGGCTTTTTTTTACATATTGAGCAGGAGTTTCTTGTGGTGATAAAAGTGAGTTTGAAGCATTAAACTTAGAGAAATTGTTTTACCTCCCAGATTTTGAAGTTAAAACCTGAAAATTTGAGTTTTTGAAATTGTGATTTTTGGAACTTGAAGTTGTGCTTATACATGCATATTACTTGGAAAATTTGAAACTTTTGTGAGTAAAAGTGAATTTCTCCCAAAACTGGTCTGGACCAGCTTTTGGAACTTGATATTTTTTTGAAGACAGATTTTCAAAATTTGATTGAATATCTATGGCCAAACAGATATTTTAAGACAAGTGTTCTAAGCAGAAAAGGCTACTACTAAAGTACATGCTATATTCTAAGTGCCCAGTTACGTCTTGCTTAGGGATGACAACTTTAATAGGCTTCAGCTACTGTACAAAACTCAAGTCTCTGTAGACTTCTCAAAGATATGGTAGACTTTATAACAAACTTCAAGAGGCTTTCCACCAAGGACTTTATTGTGGTTCTTATGAACTAAAATTGGGACTACTTGTATTCATCTCTGTACTATTGCTTAGACATTGTAATCATAAAGAGTTATAGACCAGTGCGCATGATTGATTGTGTTTAGGAGTGACTAATAATGATGCATGGAGAAAAGATTCCGTAGTGATATTCGAGCCTAGTTATAGAAATGTGATATACATGGTGAGTAGAATGTCATCCCAAATTATTGTTATTACCATATTTGCTTAAAAGATAATTTATTGTATTTATGATATGTTTAATCATCCACCTTTCCAGAATACTGGTGTAACTGTCCTTTTTTTTTTCTTGCCTGCGATTCTAGCTAATTTGTTTTTGGACTTCTCGTTCAATAAAATGCGGTAAGATTTAGTTTCATGTGTTGTTTACTGTTACCTTCCTCACAGGATAAAGATGGTGGCTATGGAGGTGGACCTGGTCAGGCAAGTCAAATTCTCCCACTCCAGTCTTAGTGCCGTTAAATCAGATTTGTGTCAGATTCTTCATGCTTATTTTCACATTGAGTTTGATTATCTGATGTCTTCAATTGTTTTTAATATGCAGTATGCTGCTTTATTTTGTGATGATGGTTGATTTGAATATTGTAAATTTGTTAACTCTATAATTCTGTTGGAGGACTTATAATTAAAAGATAATTCTATTAGAGGGAAATAGTCATCTGTATTGATATGCATTTAACTATTGGCATGGTCAGTGGTTTGAGCTTGGGACTTCCACGTTGGAGGTATCCAGTTCGAAACGGAAACGCCTTGCCAGCGAAAGCAAGGGGTTTGCCTTCTGGGTCGAGCTCGCATGGTGCGAGTTACCTCTCCTATGTAGTTTGCGAGCTATTGCATAGGAGCGGGGTTTTACCCTTGTCATTAAAAAAAAAAAGACTATTGGCCTGGTTCTTGTTCTTTTATAAGTTAGCTTGAAACTCTTTTTCTGTTTCTTTTAGAATCACAAATTTAACAGTTCCAAGCTTCGTTTATTCTGGTCAACCTGTTAATTTTATACAGTTCTTGTGCTTCTTATCATTAAGGTTCTTTGAAGTAATACTTGTATTGTATTGCTTTTTTCAGATGCCTCATCTTGCAACTACTTATGCTGCAGTCAATTCACTAATAACTTTGGGCAAACCTGAAGCTCTGTCATCAATTAATAGGTGCACAAGCTATAGTATGTTTTTGTTGGTGTCTTATCTATTGTTCATTCCTGTTGACATTGATCTAGTAATATGCCTCAGAGAAAAGTTGTACACATTTTTGCTGCGAATGAAAGACGCAAGTGGTGGATTCAGGTAGGATGCTTTCTACTTGTTTACATTATTTGATCAGCTCCCCAATTCATGTCTTCCCTTGTATCTCATTCCTAGTCTGCTGTATTTATCTACTATCAGTTTCTAAAAAAAATCTAGGTGCTTTTCTTTCTATTTGTAACTTGTTTATCCATTTTAAATTTGCCATCTCTATGTTGTATGTGCTAATGTTTTCCATTACTACTGATTCTCCTGATTAATCCTACCTGCTAATTTTGTTATGTTTTCCTTCTGAGGAGAACTAGACTTTTGGGTGAACTAGCACTGTAGTTGACACTTTTACCCTGATCTGTAAATGTATAAATATTTGTGTGTGTATTCTTGAGTTTGTAGATCCAAGTGTATTTAACGAACAGCATCTGAGAGATCACTTGTTTCTAGCATTTTCTTTCAATATTCAAGTTTCCTCAAAAATGACTTGCCACTTCCCATCTTTGCTAAGTTCAAACTTCAAATATTATCTGCAGGATGCACGATGGTGGAGAAGTAGATGTTCGTGCCTGTTATACTGCCATTTCTGTAAGTGTGATCTCCTTGTGATCTGAGTTCTGGTCATATTTTCATTATTTTGCTGCACTTGGATGGAAGACTCTGAGATAAGCTTTAAGCAAATATAATTTTCTTATTGATGAATCATGCAAGCTACGTATGTGAAACTTATCCTTCGGGGTGGCCTAGTGGCTTGGGCTTGGGACTTCCATGTTGGAGGTCTCAAGTTCGAAACCTTGCCAGCGAAAGTAAGGGGTTTTGCCTTCTTGTTTGAGCTTGTTGCACCGGGCTTGCCTAGTGCAGCTTACCTCTCTTATGTGGTTTGCGAGCTATTGCATAAGAGCGGGGGTTTTACCCTGTGCGCACCCAAAGGGTAGTGGTTGCGGGTTTCCCTTGTCATAAAAAAAATTAAAAATATGTGAAACTTAACCGTCTCTTTAGTTTTTTGAAAATAAATTAGATTCGAACATTTCCCGAATTTCATTCACGAGGCAATCAAAGCCTTCTGATACACGCCTCTCTTGCAAATCGTATAGATATTTTATACTTTATTACATACACATTTCTTGCATGTTACATTCTCAAGTTTGACGTTTTTCTTCTTAATTGTCTTTGGAATAATGTGCTTTCATGTTAATTGATACATTAGTTTCTTAGGTTGCAAATATATTAAACATTGTGGATGACGAGCTGATTCATGGTGTTGGAAATTACATCCTAAGGTTGGTTTGAGATGCGCACTCATCTGCTACAGCTTATTCAACTCTCTCTTTATGTATACCGTATTCATACTCAAGCTGTAATATCTCTTTTTGATTTACTAGTGTAGTTGTCTTCCAAGAGAAATTACACGAAATTAAAAGAGCATGGCAGAAATTTGGGAGTTTTAGAGGAGTGTAATCTGATAAAAAGATAACTATCAGAAAAGAAAGCAAGTTATATTACAAATGGTTGTGAGACTAGCGATAATACGTGAGTGATTGTTTTCTATAAAACCCAACATGTTCACTAGTTAACTGTCATGAATTATAGATGTTAATATGGATATTTGGTCATACAAGCTTGAAAATCAGATTGGAAATGCTCACCTCCAACAAAAGACGCAACAAGATAGCACGCATAGAGGATCATGAGTGAAGATTTGTCGAAATGGTTTAATTATGTTTACATTAACCTTCGAATATACCAGACTAGGTACAATACTGGAATAATTGAAGTTGCTATAAAGGCAACGAGGTAGATTCTAAATTACATGAAGAAAAACTGTTTAAAGACCTACAATCACCCAAAAGCCATTACATCAATTAGTTGAGATTAAGGAAAAGAAAAGAATTAGTTGTTGTTAAACTTACATTAGGTTGTGTTTGCCAGAGGTCCTTTTGTGTGGTAAGTTATATGTTTATGGCAGAGCAGGTGTGAGATTTTAAGAACTAATATATCTTAAAGGCAAAATATTGAGTATTGGGATGACACAAAGTAATGGATTTGGAGTATTCATATTACTGTCACCAACTAGTCAGTGCATGTTGACTAGTTAATTATACATACTAAATGCATGACCGAAGCTGGTACTTAAGTTGCATTGAAGGGTTTCTTTGAGATTCGATCCCATTGGTAAGAGAACAATTTTCCAAGTATCATTTCAGAACGATGTTATGTTTGAATATTCATGGCTCTGAGTTGATGACAGCCTCCATTTGTCAGGGATTAAAATATGAGAGATAAGTGATGTTTCCTAATTCTTGCCATCTGAGAAAGTTGAAAGTCCTTGAATAAAAATTGATGAAGGAACTATTCTTTTATTCTAGTTTGTTCTTATTCTTGTTCTCTGAAGTTCTTGATTTAATCCTAGTCTCATCATAAGAATTATTTAGCTAGGATAAATAAGAATTTATTCTATTTAGTGTCAGAAATACAAGATAAGAAGCAGGTGGCAGATCTTTCTTTTCCTTAATGTCCCTCATTTTTTGTTTGAAATATTAAGAATGTATTTTCATGGATAAGCCTTTCCTAAGCTGTTCTCCGTTTTTGCTTCAGTTGTCAGACTTATGAAGGTGGAATTGCTGGCGAACCAGGTTCTGAAGCTCATG</genome_strand>
        <mrna_strand>GAGTAAACGAGCGTTGATTTGGCGCTGACGACATTTACAGTC-AGAGTAGTAATCGGTTATAGTGAAAAAATGGAGTCGAGGAAAGTGACGAAGACGCTGGAAGATCAATGGGTGGTGGAGCGTCGAGTCCGAGAGATATACGATTATTTCTACAGCATTTCCCCCAATTCCCTGTCCGACCT.......................................................................................................CATAGAGCTGGAACGTGACAAACACTTCGATTATCTTAGCCAAGGTCTCAGAAAACTTGGTCCGTCGTTTTCCGTTTTGGATGCCAG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCGACCATGGCTTTGCTACTGGATACTTCATTCAATTGCTTTGTTGGGAGAATCTATTGATGCCAAACTGGAAAATGATGCGACTGACTTTCTGACCCGTTGCCAG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATAAAGATGGTGGCTATGGAGGTGGACCTGGTCAG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATGCCTCATCTTGCAACTACTTATGCTGCAGTCAATTCACTCATAACTTTGGGCAAACCTGAAGCTCTGTCATCAATTAATAG.................................................................................AGAAAAATTGTACACATTTTTGCGGCGAATGAAAGACACAAGTGGTGGATTCAG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATGCATGATGGTGGAGAAGTAGATGTTCGTGCCTGTTATACTGCCATTTCT...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTGCAAATATATTAAACATTGTGGATGACGAGCTGATTCATGGTGTTGGAAATTACATCCTAAG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTGTCAGACTTTTGAAGGTGGAATTGCTGGCGAACCAGGGTCTGAAGCTCATG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0236E02-u8qcS/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E475349" ref_strand="+" ref_description="SGN-E475349 [cSTB-38-B18]">
      <seq>agagtaagcgagcgttgatttggcgctgacgaaatttacagtcagagtagtaatcggttgtagtgaaaaaatggagtcgaggaaagtgacgaagacgctggaagatcaatgggtggtggagcgtcgagtccgagagatatacgattatttctacagcatttcccccaattccctgtccgacctcatagagctggaacgtgacaaacacttcgattatcttagccaaggtctcagataacttggtccgtcgttttccgttttggatgccagtcgaccatggctttgctactggatacttcattcaattgctttgttgggagaatctattgatgccaaactggaaaatgatgcgactgactttctgacccgttgccaggataaagatggtggctatggaggtggacctggtcagatgcctcatcttgcaactacttatgctgcagtcaattcactcataactttgggcaaacctgaagctctgtcatcaattaatagagaaaaattgtacacatttttgctgcgaatgaaagacgcaagtggtggattcaggatgcatgatggtggagaagtagatgttcgtgcctgttatactgccatttcttttc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0236E02-u8qcS/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0236E02.1" temp_strand="-" temp_description="C02HBa0236E02.1  AC215430.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0236E02 sequenced_by:kribb upload_account_name:korea">
        <position start="59900" stop="55084"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="59600" g_stop="59417" g_length="184"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="183" r_length="183" r_score="0.962"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="59416" i_stop="59314" i_length="103">
            <donor d_prob="0.960" d_score="0.94"/>
            <acceptor a_prob="0.965" a_score="0.92"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="59313" g_stop="59227" g_length="87"/>
          <reference_exon_boundary r_type="cDNA" r_start="184" r_stop="270" r_length="87" r_score="0.943"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="59226" i_stop="58046" i_length="1181">
            <donor d_prob="1.000" d_score="0.98"/>
            <acceptor a_prob="0.593" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="58045" g_stop="57940" g_length="106"/>
          <reference_exon_boundary r_type="cDNA" r_start="271" r_stop="376" r_length="106" r_score="0.943"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="57939" i_stop="56816" i_length="1124">
            <donor d_prob="1.000" d_score="0.92"/>
            <acceptor a_prob="0.999" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="56815" g_stop="56780" g_length="36"/>
          <reference_exon_boundary r_type="cDNA" r_start="377" r_stop="412" r_length="36" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="56779" i_stop="56141" i_length="639">
            <donor d_prob="0.894" d_score="0.00"/>
            <acceptor a_prob="0.975" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="56140" g_stop="56058" g_length="83"/>
          <reference_exon_boundary r_type="cDNA" r_start="413" r_stop="495" r_length="83" r_score="0.988"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="56057" i_stop="55977" i_length="81">
            <donor d_prob="0.533" d_score="0.98"/>
            <acceptor a_prob="0.738" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="55976" g_stop="55923" g_length="54"/>
          <reference_exon_boundary r_type="cDNA" r_start="496" r_stop="549" r_length="54" r_score="0.981"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="55922" i_stop="55438" i_length="485">
            <donor d_prob="0.993" d_score="0.98"/>
            <acceptor a_prob="0.981" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="55437" g_stop="55386" g_length="52"/>
          <reference_exon_boundary r_type="cDNA" r_start="550" r_stop="601" r_length="52" r_score="0.981"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0236E02.1" gen_strand="-" ref_id="SGN-E475349" ref_strand="+">
        <total_alignment_score>0.963</total_alignment_score>
        <cumulative_length_of_scored_exons>602</cumulative_length_of_scored_exons>
        <coverage percentage="0.995" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0236E02.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E475349" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="59600" e_stop="59417"/>
          <exon e_start="59313" e_stop="59227"/>
          <exon e_start="58045" e_stop="57940"/>
          <exon e_start="56815" e_stop="56780"/>
          <exon e_start="56140" e_stop="56058"/>
          <exon e_start="55976" e_stop="55923"/>
          <exon e_start="55437" e_stop="55386"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGAGTAAACGAGCGTTGATTTGTCGCTGACGAAATTTACAGTCAAGAGTAGTAACCGGTTGTAGTGAAAAAATGGAGTCGAGGAAAGTGACGAAGACGCTGGAAGATCAATGGGTGGTGGAGCGTCGAGTCCGAGAGATATACGATTATTTCTACAGCATTTCCCCCAACTCTCCGTCCGACCTGTTAGCTCTCAACCTTTTTCAATTTCTAGGGTTCTTATTCCTTTATTCATCAACTTATTTTTGTGTTGATTTCTTTCTTTCTTTCTTTCTTTCTGTTATAAAGCATAGAGATCGAACGTGACAAACACTTCGGTTATCTAAGCCAAGGTCTCAGAAAACTTGGTCCGTCGTTTTCCGTTTTGGATGCCAGGTAAGTTCCCTCTATCTTTGATCGTTTCTCACCACTAGTTCACTTGTGATGTTGAAGATTCCAATTTTAACTGGTGGCTAATTGGAAAACAAAATTAAAATTTCGTATTATGAATTCAATGTGCTTTAAAAGGAAAATTATTTAGTATTGGAATGGAATTGACTTGAATGAAGTAATGTCTTAGTTAATATAACTTTATATAGCTGATCTCAACTTATTTGGGAGCTAGTCTATTGATTGATTGAGTGACTTTTTAGGAAGAAAAGAACATTGTTTGCAAGATTCAATCGTAATGAGAGAGTTGAGATTCTATGGTAACGAGAGGAAAGAACTAAACAAGCTAACGTGGATGAATATTGACCTTCAAATAAACTCTCTCCAAGCATCCACCCAAGAGTGCAGTCTAGTGGTTAATGAACTAGGTCGAGAATCACGAGGTCTCAAATTCAAAGGCAAAAGGTTAGGTGAGTTCTTCCCAAGTTCTTATACTGTCCATGTATTGAGGGACAGAGTTACCCACTATCTATGCTAGTGGGAGGTAGGACGTACCACGTGGAAATAATCGAGTTGAGCACTCCATAGTTACAAAAAATAAAAATAAAGCTCTCTCCAATGATTAGTTACATACAACATATTTGGATTGGTATAAGTTTCATAATGACTAATCTTGTCAGTGTAGGACACACTAAGGTTTTCTTCTTTTCCATTTTCTCGTGGGGGATCACAATGTTGTCCAACCAACTTGCTCATACCTCGACTAATGGATTGAAACATGCTATCTCTCACTAGCACATGTGCTATCTACCATGGGGTTTGGAACTTTGGTGTATCAGGTTCATCTGAACCCAATAAAATTCAATGTTGGGCATAAATCTGTGTGTAAATTTTTCATGGAATTACAATAAATAGTATATATGAAAGCATAAATTTTATAAATATAATGGGTTCAACAATAAAACTTGAGGGGAAGAATTCTGTGGTCTCCCATTCCCAATGTCCATTCAAACTTCATTAAGTCATGCCCTTTGGTTCCCTTTCCCATACCTCACCAACATAATATAAAAGTTTGGAAAATGTGTTCATCAAGATGGGATCTTGGCGTCTATTCTAGTCCAATGGAACCAAAGGCTATTTTGTTAACATCAACTATTTCTATGCCTTACTTAAGTTTTTCTTTCTAGTCGACCATGGCTTTGCTACTGGACACTTCATTCAATCGCTTTGTTGGGAGAATCTATTGGTGGCAAACTGGAAAATGATGCAATTGACTTTCTGACCCGTTGCCAGGTTTGTTCATTTTGTATTCTGCTGGTTATGTATCTATGTCTTTCTTTAAAAAGAATTGTGTAGGGATTTAGTGTATTTGTTTTTAGGGTGGGTTCAGAGCAAGCTAATAGGATCACTTTCACTGAGGAAAACTTATGTGTAATGAATCACCTTTTTTGTTTGTTTTAGGACCATACTGTGCTACAAGAGCATGATATATATAACAGCAGGCTTTTTTTTACATATTGAGCAGGAGTTTCTTGTGGTGATAAAAGTGAGTTTGAAGCATTAAACTTAGAGAAATTGTTTTACCTCCCAGATTTTGAAGTTAAAACCTGAAAATTTGAGTTTTTGAAATTGTGATTTTTGGAACTTGAAGTTGTGCTTATACATGCATATTACTTGGAAAATTTGAAACTTTTGTGAGTAAAAGTGAATTTCTCCCAAAACTGGTCTGGACCAGCTTTTGGAACTTGATATTTTTTTGAAGACAGATTTTCAAAATTTGATTGAATATCTATGGCCAAACAGATATTTTAAGACAAGTGTTCTAAGCAGAAAAGGCTACTACTAAAGTACATGCTATATTCTAAGTGCCCAGTTACGTCTTGCTTAGGGATGACAACTTTAATAGGCTTCAGCTACTGTACAAAACTCAAGTCTCTGTAGACTTCTCAAAGATATGGTAGACTTTATAACAAACTTCAAGAGGCTTTCCACCAAGGACTTTATTGTGGTTCTTATGAACTAAAATTGGGACTACTTGTATTCATCTCTGTACTATTGCTTAGACATTGTAATCATAAAGAGTTATAGACCAGTGCGCATGATTGATTGTGTTTAGGAGTGACTAATAATGATGCATGGAGAAAAGATTCCGTAGTGATATTCGAGCCTAGTTATAGAAATGTGATATACATGGTGAGTAGAATGTCATCCCAAATTATTGTTATTACCATATTTGCTTAAAAGATAATTTATTGTATTTATGATATGTTTAATCATCCACCTTTCCAGAATACTGGTGTAACTGTCCTTTTTTTTTTCTTGCCTGCGATTCTAGCTAATTTGTTTTTGGACTTCTCGTTCAATAAAATGCGGTAAGATTTAGTTTCATGTGTTGTTTACTGTTACCTTCCTCACAGGATAAAGATGGTGGCTATGGAGGTGGACCTGGTCAGGCAAGTCAAATTCTCCCACTCCAGTCTTAGTGCCGTTAAATCAGATTTGTGTCAGATTCTTCATGCTTATTTTCACATTGAGTTTGATTATCTGATGTCTTCAATTGTTTTTAATATGCAGTATGCTGCTTTATTTTGTGATGATGGTTGATTTGAATATTGTAAATTTGTTAACTCTATAATTCTGTTGGAGGACTTATAATTAAAAGATAATTCTATTAGAGGGAAATAGTCATCTGTATTGATATGCATTTAACTATTGGCATGGTCAGTGGTTTGAGCTTGGGACTTCCACGTTGGAGGTATCCAGTTCGAAACGGAAACGCCTTGCCAGCGAAAGCAAGGGGTTTGCCTTCTGGGTCGAGCTCGCATGGTGCGAGTTACCTCTCCTATGTAGTTTGCGAGCTATTGCATAGGAGCGGGGTTTTACCCTTGTCATTAAAAAAAAAAAGACTATTGGCCTGGTTCTTGTTCTTTTATAAGTTAGCTTGAAACTCTTTTTCTGTTTCTTTTAGAATCACAAATTTAACAGTTCCAAGCTTCGTTTATTCTGGTCAACCTGTTAATTTTATACAGTTCTTGTGCTTCTTATCATTAAGGTTCTTTGAAGTAATACTTGTATTGTATTGCTTTTTTCAGATGCCTCATCTTGCAACTACTTATGCTGCAGTCAATTCACTAATAACTTTGGGCAAACCTGAAGCTCTGTCATCAATTAATAGGTGCACAAGCTATAGTATGTTTTTGTTGGTGTCTTATCTATTGTTCATTCCTGTTGACATTGATCTAGTAATATGCCTCAGAGAAAAGTTGTACACATTTTTGCTGCGAATGAAAGACGCAAGTGGTGGATTCAGGTAGGATGCTTTCTACTTGTTTACATTATTTGATCAGCTCCCCAATTCATGTCTTCCCTTGTATCTCATTCCTAGTCTGCTGTATTTATCTACTATCAGTTTCTAAAAAAAATCTAGGTGCTTTTCTTTCTATTTGTAACTTGTTTATCCATTTTAAATTTGCCATCTCTATGTTGTATGTGCTAATGTTTTCCATTACTACTGATTCTCCTGATTAATCCTACCTGCTAATTTTGTTATGTTTTCCTTCTGAGGAGAACTAGACTTTTGGGTGAACTAGCACTGTAGTTGACACTTTTACCCTGATCTGTAAATGTATAAATATTTGTGTGTGTATTCTTGAGTTTGTAGATCCAAGTGTATTTAACGAACAGCATCTGAGAGATCACTTGTTTCTAGCATTTTCTTTCAATATTCAAGTTTCCTCAAAAATGACTTGCCACTTCCCATCTTTGCTAAGTTCAAACTTCAAATATTATCTGCAGGATGCACGATGGTGGAGAAGTAGATGTTCGTGCCTGTTATACTGCCATTTCT</genome_strand>
        <mrna_strand>AGAGTAAGCGAGCGTTGATTTGGCGCTGACGAAATTTACAGTC-AGAGTAGTAATCGGTTGTAGTGAAAAAATGGAGTCGAGGAAAGTGACGAAGACGCTGGAAGATCAATGGGTGGTGGAGCGTCGAGTCCGAGAGATATACGATTATTTCTACAGCATTTCCCCCAATTCCCTGTCCGACCT.......................................................................................................CATAGAGCTGGAACGTGACAAACACTTCGATTATCTTAGCCAAGGTCTCAGATAACTTGGTCCGTCGTTTTCCGTTTTGGATGCCAG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCGACCATGGCTTTGCTACTGGATACTTCATTCAATTGCTTTGTTGGGAGAATCTATTGATGCCAAACTGGAAAATGATGCGACTGACTTTCTGACCCGTTGCCAG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATAAAGATGGTGGCTATGGAGGTGGACCTGGTCAG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATGCCTCATCTTGCAACTACTTATGCTGCAGTCAATTCACTCATAACTTTGGGCAAACCTGAAGCTCTGTCATCAATTAATAG.................................................................................AGAAAAATTGTACACATTTTTGCTGCGAATGAAAGACGCAAGTGGTGGATTCAG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATGCATGATGGTGGAGAAGTAGATGTTCGTGCCTGTTATACTGCCATTTCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0236E02-u8qcS/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E301063" ref_strand="+" ref_description="SGN-E301063 [cLEW-22-H17]">
      <seq>agggtcaagagtagtaaccggttgtagtgaaaaaatggagtcgaggaaagtgacgaagacgctggaagatcaatgggtggtggagcgtcgagtccgagagatatacgattatttctacagcatttcccccaactctccgtccgacctcatagagatcgaacgtgacaaacacttcggttatctaagccaaggtctcagaaaacttggtccgtcgttttccgttttggatgccagtcgaccatggctttgctactggacacttcattcaatcgctttgttgggagaatctattggtggcaaactggaaaatgatgcaattgactttctgacccgttgccaggataaagatggtggctatggaggtggacctggtcagatgcctcatcttgcaactacttatgctgcagtcaattcactaataactttgggcaaacctgaagctctgtcatcaattaatagagaaaagttgtacacatttttgctgcgaatgaaagacgcaagtggtggattcaggatgcacgatggtggagaagtagatgttcgt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0236E02-u8qcS/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0236E02.1" temp_strand="-" temp_description="C02HBa0236E02.1  AC215430.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0236E02 sequenced_by:kribb upload_account_name:korea">
        <position start="59860" stop="55107"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="59563" g_stop="59417" g_length="147"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="147" r_length="147" r_score="0.986"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="59416" i_stop="59314" i_length="103">
            <donor d_prob="0.960" d_score="1.00"/>
            <acceptor a_prob="0.965" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="59313" g_stop="59227" g_length="87"/>
          <reference_exon_boundary r_type="cDNA" r_start="148" r_stop="234" r_length="87" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="59226" i_stop="58046" i_length="1181">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.593" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="58045" g_stop="57940" g_length="106"/>
          <reference_exon_boundary r_type="cDNA" r_start="235" r_stop="340" r_length="106" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="57939" i_stop="56816" i_length="1124">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="56815" g_stop="56780" g_length="36"/>
          <reference_exon_boundary r_type="cDNA" r_start="341" r_stop="376" r_length="36" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="56779" i_stop="56141" i_length="639">
            <donor d_prob="0.894" d_score="0.00"/>
            <acceptor a_prob="0.975" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="56140" g_stop="56058" g_length="83"/>
          <reference_exon_boundary r_type="cDNA" r_start="377" r_stop="459" r_length="83" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="56057" i_stop="55977" i_length="81">
            <donor d_prob="0.533" d_score="1.00"/>
            <acceptor a_prob="0.738" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="55976" g_stop="55923" g_length="54"/>
          <reference_exon_boundary r_type="cDNA" r_start="460" r_stop="513" r_length="54" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="55922" i_stop="55438" i_length="485">
            <donor d_prob="0.993" d_score="1.00"/>
            <acceptor a_prob="0.981" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="55437" g_stop="55407" g_length="31"/>
          <reference_exon_boundary r_type="cDNA" r_start="514" r_stop="544" r_length="31" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0236E02.1" gen_strand="-" ref_id="SGN-E301063" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>544</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0236E02.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E301063" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="59563" e_stop="59417"/>
          <exon e_start="59313" e_stop="59227"/>
          <exon e_start="58045" e_stop="57940"/>
          <exon e_start="56815" e_stop="56780"/>
          <exon e_start="56140" e_stop="56058"/>
          <exon e_start="55976" e_stop="55923"/>
          <exon e_start="55437" e_stop="55407"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACAGTCAAGAGTAGTAACCGGTTGTAGTGAAAAAATGGAGTCGAGGAAAGTGACGAAGACGCTGGAAGATCAATGGGTGGTGGAGCGTCGAGTCCGAGAGATATACGATTATTTCTACAGCATTTCCCCCAACTCTCCGTCCGACCTGTTAGCTCTCAACCTTTTTCAATTTCTAGGGTTCTTATTCCTTTATTCATCAACTTATTTTTGTGTTGATTTCTTTCTTTCTTTCTTTCTTTCTGTTATAAAGCATAGAGATCGAACGTGACAAACACTTCGGTTATCTAAGCCAAGGTCTCAGAAAACTTGGTCCGTCGTTTTCCGTTTTGGATGCCAGGTAAGTTCCCTCTATCTTTGATCGTTTCTCACCACTAGTTCACTTGTGATGTTGAAGATTCCAATTTTAACTGGTGGCTAATTGGAAAACAAAATTAAAATTTCGTATTATGAATTCAATGTGCTTTAAAAGGAAAATTATTTAGTATTGGAATGGAATTGACTTGAATGAAGTAATGTCTTAGTTAATATAACTTTATATAGCTGATCTCAACTTATTTGGGAGCTAGTCTATTGATTGATTGAGTGACTTTTTAGGAAGAAAAGAACATTGTTTGCAAGATTCAATCGTAATGAGAGAGTTGAGATTCTATGGTAACGAGAGGAAAGAACTAAACAAGCTAACGTGGATGAATATTGACCTTCAAATAAACTCTCTCCAAGCATCCACCCAAGAGTGCAGTCTAGTGGTTAATGAACTAGGTCGAGAATCACGAGGTCTCAAATTCAAAGGCAAAAGGTTAGGTGAGTTCTTCCCAAGTTCTTATACTGTCCATGTATTGAGGGACAGAGTTACCCACTATCTATGCTAGTGGGAGGTAGGACGTACCACGTGGAAATAATCGAGTTGAGCACTCCATAGTTACAAAAAATAAAAATAAAGCTCTCTCCAATGATTAGTTACATACAACATATTTGGATTGGTATAAGTTTCATAATGACTAATCTTGTCAGTGTAGGACACACTAAGGTTTTCTTCTTTTCCATTTTCTCGTGGGGGATCACAATGTTGTCCAACCAACTTGCTCATACCTCGACTAATGGATTGAAACATGCTATCTCTCACTAGCACATGTGCTATCTACCATGGGGTTTGGAACTTTGGTGTATCAGGTTCATCTGAACCCAATAAAATTCAATGTTGGGCATAAATCTGTGTGTAAATTTTTCATGGAATTACAATAAATAGTATATATGAAAGCATAAATTTTATAAATATAATGGGTTCAACAATAAAACTTGAGGGGAAGAATTCTGTGGTCTCCCATTCCCAATGTCCATTCAAACTTCATTAAGTCATGCCCTTTGGTTCCCTTTCCCATACCTCACCAACATAATATAAAAGTTTGGAAAATGTGTTCATCAAGATGGGATCTTGGCGTCTATTCTAGTCCAATGGAACCAAAGGCTATTTTGTTAACATCAACTATTTCTATGCCTTACTTAAGTTTTTCTTTCTAGTCGACCATGGCTTTGCTACTGGACACTTCATTCAATCGCTTTGTTGGGAGAATCTATTGGTGGCAAACTGGAAAATGATGCAATTGACTTTCTGACCCGTTGCCAGGTTTGTTCATTTTGTATTCTGCTGGTTATGTATCTATGTCTTTCTTTAAAAAGAATTGTGTAGGGATTTAGTGTATTTGTTTTTAGGGTGGGTTCAGAGCAAGCTAATAGGATCACTTTCACTGAGGAAAACTTATGTGTAATGAATCACCTTTTTTGTTTGTTTTAGGACCATACTGTGCTACAAGAGCATGATATATATAACAGCAGGCTTTTTTTTACATATTGAGCAGGAGTTTCTTGTGGTGATAAAAGTGAGTTTGAAGCATTAAACTTAGAGAAATTGTTTTACCTCCCAGATTTTGAAGTTAAAACCTGAAAATTTGAGTTTTTGAAATTGTGATTTTTGGAACTTGAAGTTGTGCTTATACATGCATATTACTTGGAAAATTTGAAACTTTTGTGAGTAAAAGTGAATTTCTCCCAAAACTGGTCTGGACCAGCTTTTGGAACTTGATATTTTTTTGAAGACAGATTTTCAAAATTTGATTGAATATCTATGGCCAAACAGATATTTTAAGACAAGTGTTCTAAGCAGAAAAGGCTACTACTAAAGTACATGCTATATTCTAAGTGCCCAGTTACGTCTTGCTTAGGGATGACAACTTTAATAGGCTTCAGCTACTGTACAAAACTCAAGTCTCTGTAGACTTCTCAAAGATATGGTAGACTTTATAACAAACTTCAAGAGGCTTTCCACCAAGGACTTTATTGTGGTTCTTATGAACTAAAATTGGGACTACTTGTATTCATCTCTGTACTATTGCTTAGACATTGTAATCATAAAGAGTTATAGACCAGTGCGCATGATTGATTGTGTTTAGGAGTGACTAATAATGATGCATGGAGAAAAGATTCCGTAGTGATATTCGAGCCTAGTTATAGAAATGTGATATACATGGTGAGTAGAATGTCATCCCAAATTATTGTTATTACCATATTTGCTTAAAAGATAATTTATTGTATTTATGATATGTTTAATCATCCACCTTTCCAGAATACTGGTGTAACTGTCCTTTTTTTTTTCTTGCCTGCGATTCTAGCTAATTTGTTTTTGGACTTCTCGTTCAATAAAATGCGGTAAGATTTAGTTTCATGTGTTGTTTACTGTTACCTTCCTCACAGGATAAAGATGGTGGCTATGGAGGTGGACCTGGTCAGGCAAGTCAAATTCTCCCACTCCAGTCTTAGTGCCGTTAAATCAGATTTGTGTCAGATTCTTCATGCTTATTTTCACATTGAGTTTGATTATCTGATGTCTTCAATTGTTTTTAATATGCAGTATGCTGCTTTATTTTGTGATGATGGTTGATTTGAATATTGTAAATTTGTTAACTCTATAATTCTGTTGGAGGACTTATAATTAAAAGATAATTCTATTAGAGGGAAATAGTCATCTGTATTGATATGCATTTAACTATTGGCATGGTCAGTGGTTTGAGCTTGGGACTTCCACGTTGGAGGTATCCAGTTCGAAACGGAAACGCCTTGCCAGCGAAAGCAAGGGGTTTGCCTTCTGGGTCGAGCTCGCATGGTGCGAGTTACCTCTCCTATGTAGTTTGCGAGCTATTGCATAGGAGCGGGGTTTTACCCTTGTCATTAAAAAAAAAAAGACTATTGGCCTGGTTCTTGTTCTTTTATAAGTTAGCTTGAAACTCTTTTTCTGTTTCTTTTAGAATCACAAATTTAACAGTTCCAAGCTTCGTTTATTCTGGTCAACCTGTTAATTTTATACAGTTCTTGTGCTTCTTATCATTAAGGTTCTTTGAAGTAATACTTGTATTGTATTGCTTTTTTCAGATGCCTCATCTTGCAACTACTTATGCTGCAGTCAATTCACTAATAACTTTGGGCAAACCTGAAGCTCTGTCATCAATTAATAGGTGCACAAGCTATAGTATGTTTTTGTTGGTGTCTTATCTATTGTTCATTCCTGTTGACATTGATCTAGTAATATGCCTCAGAGAAAAGTTGTACACATTTTTGCTGCGAATGAAAGACGCAAGTGGTGGATTCAGGTAGGATGCTTTCTACTTGTTTACATTATTTGATCAGCTCCCCAATTCATGTCTTCCCTTGTATCTCATTCCTAGTCTGCTGTATTTATCTACTATCAGTTTCTAAAAAAAATCTAGGTGCTTTTCTTTCTATTTGTAACTTGTTTATCCATTTTAAATTTGCCATCTCTATGTTGTATGTGCTAATGTTTTCCATTACTACTGATTCTCCTGATTAATCCTACCTGCTAATTTTGTTATGTTTTCCTTCTGAGGAGAACTAGACTTTTGGGTGAACTAGCACTGTAGTTGACACTTTTACCCTGATCTGTAAATGTATAAATATTTGTGTGTGTATTCTTGAGTTTGTAGATCCAAGTGTATTTAACGAACAGCATCTGAGAGATCACTTGTTTCTAGCATTTTCTTTCAATATTCAAGTTTCCTCAAAAATGACTTGCCACTTCCCATCTTTGCTAAGTTCAAACTTCAAATATTATCTGCAGGATGCACGATGGTGGAGAAGTAGATGTTCGT</genome_strand>
        <mrna_strand>AGGGTCAAGAGTAGTAACCGGTTGTAGTGAAAAAATGGAGTCGAGGAAAGTGACGAAGACGCTGGAAGATCAATGGGTGGTGGAGCGTCGAGTCCGAGAGATATACGATTATTTCTACAGCATTTCCCCCAACTCTCCGTCCGACCT.......................................................................................................CATAGAGATCGAACGTGACAAACACTTCGGTTATCTAAGCCAAGGTCTCAGAAAACTTGGTCCGTCGTTTTCCGTTTTGGATGCCAG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCGACCATGGCTTTGCTACTGGACACTTCATTCAATCGCTTTGTTGGGAGAATCTATTGGTGGCAAACTGGAAAATGATGCAATTGACTTTCTGACCCGTTGCCAG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATAAAGATGGTGGCTATGGAGGTGGACCTGGTCAG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATGCCTCATCTTGCAACTACTTATGCTGCAGTCAATTCACTAATAACTTTGGGCAAACCTGAAGCTCTGTCATCAATTAATAG.................................................................................AGAAAAGTTGTACACATTTTTGCTGCGAATGAAAGACGCAAGTGGTGGATTCAG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATGCACGATGGTGGAGAAGTAGATGTTCGT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0236E02-u8qcS/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E485055" ref_strand="+" ref_description="SGN-E485055 [cSTE-16-I10]">
      <seq>agagtaaacgagcgttgatttggcgctgacgaaatttacagtcagagtagtaatcggttgtagtgaaaaaatggagtcgaggaaagtgacgaagacgctggaagatcaatgggtggtggagcgtcgagtccgagagatatacgattatttctacagcatttcccccaattccctgtccgacctcatagagctggaacgtgacaaacacttcgattatcttagccaaggtctcagaaaacttggtccgtcgttttccgttttggatgccagtcgaccatggctttgctactggatacttcattcaattgctttgttgggagaatctattggtgccaaactggaaaatgatgcgactgactttctgacccgttgccagaatactggtgcaactgtcctttttttcttgcctgcaattctagctaatttgtttttggacttctcgcgcaagaaaatgcggtaagatttagtttcatgtgttgtttacggttaccttcctcacaggataaagatggtggctatggaggtggacctggtcagatgcctcatcttgcaactacttatgctgcagtcaattcactcataactttgggcaaacctgaagctctgtcatcaattaataggtgcacaagctataagaaaaattgtacacatttttgctgcgaatgaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0236E02-u8qcS/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0236E02.1" temp_strand="-" temp_description="C02HBa0236E02.1  AC215430.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0236E02 sequenced_by:kribb upload_account_name:korea">
        <position start="59900" stop="55644"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="59600" g_stop="59417" g_length="184"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="183" r_length="183" r_score="0.967"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="59416" i_stop="59314" i_length="103">
            <donor d_prob="0.960" d_score="0.94"/>
            <acceptor a_prob="0.965" a_score="0.92"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="59313" g_stop="59227" g_length="87"/>
          <reference_exon_boundary r_type="cDNA" r_start="184" r_stop="270" r_length="87" r_score="0.954"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="59226" i_stop="58046" i_length="1181">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.593" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="58045" g_stop="57940" g_length="106"/>
          <reference_exon_boundary r_type="cDNA" r_start="271" r_stop="376" r_length="106" r_score="0.953"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="57939" i_stop="56944" i_length="996">
            <donor d_prob="1.000" d_score="0.94"/>
            <acceptor a_prob="0.664" a_score="0.90"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="56943" g_stop="56780" g_length="164"/>
          <reference_exon_boundary r_type="cDNA" r_start="377" r_stop="537" r_length="161" r_score="0.945"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="56779" i_stop="56141" i_length="639">
            <donor d_prob="0.894" d_score="1.00"/>
            <acceptor a_prob="0.975" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="56140" g_stop="56044" g_length="97"/>
          <reference_exon_boundary r_type="cDNA" r_start="538" r_stop="634" r_length="97" r_score="0.990"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="56043" i_stop="55977" i_length="67">
            <donor d_prob="0.476" d_score="1.00"/>
            <acceptor a_prob="0.738" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="55976" g_stop="55944" g_length="33"/>
          <reference_exon_boundary r_type="cDNA" r_start="635" r_stop="667" r_length="33" r_score="0.970"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0236E02.1" gen_strand="-" ref_id="SGN-E485055" ref_strand="+">
        <total_alignment_score>0.961</total_alignment_score>
        <cumulative_length_of_scored_exons>671</cumulative_length_of_scored_exons>
        <coverage percentage="1.006" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0236E02.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E485055" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="59600" e_stop="59417"/>
          <exon e_start="59313" e_stop="59227"/>
          <exon e_start="58045" e_stop="57940"/>
          <exon e_start="56943" e_stop="56780"/>
          <exon e_start="56140" e_stop="56044"/>
          <exon e_start="55976" e_stop="55944"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGAGTAAACGAGCGTTGATTTGTCGCTGACGAAATTTACAGTCAAGAGTAGTAACCGGTTGTAGTGAAAAAATGGAGTCGAGGAAAGTGACGAAGACGCTGGAAGATCAATGGGTGGTGGAGCGTCGAGTCCGAGAGATATACGATTATTTCTACAGCATTTCCCCCAACTCTCCGTCCGACCTGTTAGCTCTCAACCTTTTTCAATTTCTAGGGTTCTTATTCCTTTATTCATCAACTTATTTTTGTGTTGATTTCTTTCTTTCTTTCTTTCTTTCTGTTATAAAGCATAGAGATCGAACGTGACAAACACTTCGGTTATCTAAGCCAAGGTCTCAGAAAACTTGGTCCGTCGTTTTCCGTTTTGGATGCCAGGTAAGTTCCCTCTATCTTTGATCGTTTCTCACCACTAGTTCACTTGTGATGTTGAAGATTCCAATTTTAACTGGTGGCTAATTGGAAAACAAAATTAAAATTTCGTATTATGAATTCAATGTGCTTTAAAAGGAAAATTATTTAGTATTGGAATGGAATTGACTTGAATGAAGTAATGTCTTAGTTAATATAACTTTATATAGCTGATCTCAACTTATTTGGGAGCTAGTCTATTGATTGATTGAGTGACTTTTTAGGAAGAAAAGAACATTGTTTGCAAGATTCAATCGTAATGAGAGAGTTGAGATTCTATGGTAACGAGAGGAAAGAACTAAACAAGCTAACGTGGATGAATATTGACCTTCAAATAAACTCTCTCCAAGCATCCACCCAAGAGTGCAGTCTAGTGGTTAATGAACTAGGTCGAGAATCACGAGGTCTCAAATTCAAAGGCAAAAGGTTAGGTGAGTTCTTCCCAAGTTCTTATACTGTCCATGTATTGAGGGACAGAGTTACCCACTATCTATGCTAGTGGGAGGTAGGACGTACCACGTGGAAATAATCGAGTTGAGCACTCCATAGTTACAAAAAATAAAAATAAAGCTCTCTCCAATGATTAGTTACATACAACATATTTGGATTGGTATAAGTTTCATAATGACTAATCTTGTCAGTGTAGGACACACTAAGGTTTTCTTCTTTTCCATTTTCTCGTGGGGGATCACAATGTTGTCCAACCAACTTGCTCATACCTCGACTAATGGATTGAAACATGCTATCTCTCACTAGCACATGTGCTATCTACCATGGGGTTTGGAACTTTGGTGTATCAGGTTCATCTGAACCCAATAAAATTCAATGTTGGGCATAAATCTGTGTGTAAATTTTTCATGGAATTACAATAAATAGTATATATGAAAGCATAAATTTTATAAATATAATGGGTTCAACAATAAAACTTGAGGGGAAGAATTCTGTGGTCTCCCATTCCCAATGTCCATTCAAACTTCATTAAGTCATGCCCTTTGGTTCCCTTTCCCATACCTCACCAACATAATATAAAAGTTTGGAAAATGTGTTCATCAAGATGGGATCTTGGCGTCTATTCTAGTCCAATGGAACCAAAGGCTATTTTGTTAACATCAACTATTTCTATGCCTTACTTAAGTTTTTCTTTCTAGTCGACCATGGCTTTGCTACTGGACACTTCATTCAATCGCTTTGTTGGGAGAATCTATTGGTGGCAAACTGGAAAATGATGCAATTGACTTTCTGACCCGTTGCCAGGTTTGTTCATTTTGTATTCTGCTGGTTATGTATCTATGTCTTTCTTTAAAAAGAATTGTGTAGGGATTTAGTGTATTTGTTTTTAGGGTGGGTTCAGAGCAAGCTAATAGGATCACTTTCACTGAGGAAAACTTATGTGTAATGAATCACCTTTTTTGTTTGTTTTAGGACCATACTGTGCTACAAGAGCATGATATATATAACAGCAGGCTTTTTTTTACATATTGAGCAGGAGTTTCTTGTGGTGATAAAAGTGAGTTTGAAGCATTAAACTTAGAGAAATTGTTTTACCTCCCAGATTTTGAAGTTAAAACCTGAAAATTTGAGTTTTTGAAATTGTGATTTTTGGAACTTGAAGTTGTGCTTATACATGCATATTACTTGGAAAATTTGAAACTTTTGTGAGTAAAAGTGAATTTCTCCCAAAACTGGTCTGGACCAGCTTTTGGAACTTGATATTTTTTTGAAGACAGATTTTCAAAATTTGATTGAATATCTATGGCCAAACAGATATTTTAAGACAAGTGTTCTAAGCAGAAAAGGCTACTACTAAAGTACATGCTATATTCTAAGTGCCCAGTTACGTCTTGCTTAGGGATGACAACTTTAATAGGCTTCAGCTACTGTACAAAACTCAAGTCTCTGTAGACTTCTCAAAGATATGGTAGACTTTATAACAAACTTCAAGAGGCTTTCCACCAAGGACTTTATTGTGGTTCTTATGAACTAAAATTGGGACTACTTGTATTCATCTCTGTACTATTGCTTAGACATTGTAATCATAAAGAGTTATAGACCAGTGCGCATGATTGATTGTGTTTAGGAGTGACTAATAATGATGCATGGAGAAAAGATTCCGTAGTGATATTCGAGCCTAGTTATAGAAATGTGATATACATGGTGAGTAGAATGTCATCCCAAATTATTGTTATTACCATATTTGCTTAAAAGATAATTTATTGTATTTATGATATGTTTAATCATCCACCTTTCCAGAATACTGGTGTAACTGTCCTTTTTTTTTTCTTGCCTGCGATTCTAGCTAATTTGTTTTTGGACTTCTCGTTCAATAAAATGCGGTAAGATTTAGTTTCATGTGTTGTTTACTGTTACCTTCCTCACAGGATAAAGATGGTGGCTATGGAGGTGGACCTGGTCAGGCAAGTCAAATTCTCCCACTCCAGTCTTAGTGCCGTTAAATCAGATTTGTGTCAGATTCTTCATGCTTATTTTCACATTGAGTTTGATTATCTGATGTCTTCAATTGTTTTTAATATGCAGTATGCTGCTTTATTTTGTGATGATGGTTGATTTGAATATTGTAAATTTGTTAACTCTATAATTCTGTTGGAGGACTTATAATTAAAAGATAATTCTATTAGAGGGAAATAGTCATCTGTATTGATATGCATTTAACTATTGGCATGGTCAGTGGTTTGAGCTTGGGACTTCCACGTTGGAGGTATCCAGTTCGAAACGGAAACGCCTTGCCAGCGAAAGCAAGGGGTTTGCCTTCTGGGTCGAGCTCGCATGGTGCGAGTTACCTCTCCTATGTAGTTTGCGAGCTATTGCATAGGAGCGGGGTTTTACCCTTGTCATTAAAAAAAAAAAGACTATTGGCCTGGTTCTTGTTCTTTTATAAGTTAGCTTGAAACTCTTTTTCTGTTTCTTTTAGAATCACAAATTTAACAGTTCCAAGCTTCGTTTATTCTGGTCAACCTGTTAATTTTATACAGTTCTTGTGCTTCTTATCATTAAGGTTCTTTGAAGTAATACTTGTATTGTATTGCTTTTTTCAGATGCCTCATCTTGCAACTACTTATGCTGCAGTCAATTCACTAATAACTTTGGGCAAACCTGAAGCTCTGTCATCAATTAATAGGTGCACAAGCTATAGTATGTTTTTGTTGGTGTCTTATCTATTGTTCATTCCTGTTGACATTGATCTAGTAATATGCCTCAGAGAAAAGTTGTACACATTTTTGCTGCGAATGAA</genome_strand>
        <mrna_strand>AGAGTAAACGAGCGTTGATTTGGCGCTGACGAAATTTACAGTC-AGAGTAGTAATCGGTTGTAGTGAAAAAATGGAGTCGAGGAAAGTGACGAAGACGCTGGAAGATCAATGGGTGGTGGAGCGTCGAGTCCGAGAGATATACGATTATTTCTACAGCATTTCCCCCAATTCCCTGTCCGACCT.......................................................................................................CATAGAGCTGGAACGTGACAAACACTTCGATTATCTTAGCCAAGGTCTCAGAAAACTTGGTCCGTCGTTTTCCGTTTTGGATGCCAG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCGACCATGGCTTTGCTACTGGATACTTCATTCAATTGCTTTGTTGGGAGAATCTATTGGTGCCAAACTGGAAAATGATGCGACTGACTTTCTGACCCGTTGCCAG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AATACTGGTGCAACTGTCC---TTTTTTTCTTGCCTGCAATTCTAGCTAATTTGTTTTTGGACTTCTCGCGCAAGAAAATGCGGTAAGATTTAGTTTCATGTGTTGTTTACGGTTACCTTCCTCACAGGATAAAGATGGTGGCTATGGAGGTGGACCTGGTCAG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATGCCTCATCTTGCAACTACTTATGCTGCAGTCAATTCACTCATAACTTTGGGCAAACCTGAAGCTCTGTCATCAATTAATAGGTGCACAAGCTATA...................................................................AGAAAAATTGTACACATTTTTGCTGCGAATGAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0236E02-u8qcS/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E239516" ref_strand="+" ref_description="SGN-E239516 [cLED-23-L24]">
      <seq>tggagcgtcgagtccgagagatatacgattatttctacagcatttcccccaactctccgtccgacctcatagagatcgaacgtgacaaacacttcggttatctaagccaaggtctcagaaaacttggtccgtcgttttccgttttggatgccagtcgaccatggctttgctactggacacttcattcaatcgctttgttgggagaatctattggtggcaaactggaaaatgatgcaattgactttctgacccgttgccaggataaagatggtggctatggaggtggacctggtcagatgcctcatcttgcaactacttatgctgcagtcaattcactaataactttgg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0236E02-u8qcS/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0236E02.1" temp_strand="-" temp_description="C02HBa0236E02.1  AC215430.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0236E02 sequenced_by:kribb upload_account_name:korea">
        <position start="59783" stop="55789"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="59483" g_stop="59417" g_length="67"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="67" r_length="67" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="59416" i_stop="59314" i_length="103">
            <donor d_prob="0.960" d_score="1.00"/>
            <acceptor a_prob="0.965" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="59313" g_stop="59227" g_length="87"/>
          <reference_exon_boundary r_type="cDNA" r_start="68" r_stop="154" r_length="87" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="59226" i_stop="58046" i_length="1181">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.593" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="58045" g_stop="57940" g_length="106"/>
          <reference_exon_boundary r_type="cDNA" r_start="155" r_stop="260" r_length="106" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="57939" i_stop="56816" i_length="1124">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="56815" g_stop="56780" g_length="36"/>
          <reference_exon_boundary r_type="cDNA" r_start="261" r_stop="296" r_length="36" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="56779" i_stop="56141" i_length="639">
            <donor d_prob="0.894" d_score="0.00"/>
            <acceptor a_prob="0.975" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="56140" g_stop="56089" g_length="52"/>
          <reference_exon_boundary r_type="cDNA" r_start="297" r_stop="348" r_length="52" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0236E02.1" gen_strand="-" ref_id="SGN-E239516" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>348</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0236E02.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E239516" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="59483" e_stop="59417"/>
          <exon e_start="59313" e_stop="59227"/>
          <exon e_start="58045" e_stop="57940"/>
          <exon e_start="56815" e_stop="56780"/>
          <exon e_start="56140" e_stop="56089"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGGAGCGTCGAGTCCGAGAGATATACGATTATTTCTACAGCATTTCCCCCAACTCTCCGTCCGACCTGTTAGCTCTCAACCTTTTTCAATTTCTAGGGTTCTTATTCCTTTATTCATCAACTTATTTTTGTGTTGATTTCTTTCTTTCTTTCTTTCTTTCTGTTATAAAGCATAGAGATCGAACGTGACAAACACTTCGGTTATCTAAGCCAAGGTCTCAGAAAACTTGGTCCGTCGTTTTCCGTTTTGGATGCCAGGTAAGTTCCCTCTATCTTTGATCGTTTCTCACCACTAGTTCACTTGTGATGTTGAAGATTCCAATTTTAACTGGTGGCTAATTGGAAAACAAAATTAAAATTTCGTATTATGAATTCAATGTGCTTTAAAAGGAAAATTATTTAGTATTGGAATGGAATTGACTTGAATGAAGTAATGTCTTAGTTAATATAACTTTATATAGCTGATCTCAACTTATTTGGGAGCTAGTCTATTGATTGATTGAGTGACTTTTTAGGAAGAAAAGAACATTGTTTGCAAGATTCAATCGTAATGAGAGAGTTGAGATTCTATGGTAACGAGAGGAAAGAACTAAACAAGCTAACGTGGATGAATATTGACCTTCAAATAAACTCTCTCCAAGCATCCACCCAAGAGTGCAGTCTAGTGGTTAATGAACTAGGTCGAGAATCACGAGGTCTCAAATTCAAAGGCAAAAGGTTAGGTGAGTTCTTCCCAAGTTCTTATACTGTCCATGTATTGAGGGACAGAGTTACCCACTATCTATGCTAGTGGGAGGTAGGACGTACCACGTGGAAATAATCGAGTTGAGCACTCCATAGTTACAAAAAATAAAAATAAAGCTCTCTCCAATGATTAGTTACATACAACATATTTGGATTGGTATAAGTTTCATAATGACTAATCTTGTCAGTGTAGGACACACTAAGGTTTTCTTCTTTTCCATTTTCTCGTGGGGGATCACAATGTTGTCCAACCAACTTGCTCATACCTCGACTAATGGATTGAAACATGCTATCTCTCACTAGCACATGTGCTATCTACCATGGGGTTTGGAACTTTGGTGTATCAGGTTCATCTGAACCCAATAAAATTCAATGTTGGGCATAAATCTGTGTGTAAATTTTTCATGGAATTACAATAAATAGTATATATGAAAGCATAAATTTTATAAATATAATGGGTTCAACAATAAAACTTGAGGGGAAGAATTCTGTGGTCTCCCATTCCCAATGTCCATTCAAACTTCATTAAGTCATGCCCTTTGGTTCCCTTTCCCATACCTCACCAACATAATATAAAAGTTTGGAAAATGTGTTCATCAAGATGGGATCTTGGCGTCTATTCTAGTCCAATGGAACCAAAGGCTATTTTGTTAACATCAACTATTTCTATGCCTTACTTAAGTTTTTCTTTCTAGTCGACCATGGCTTTGCTACTGGACACTTCATTCAATCGCTTTGTTGGGAGAATCTATTGGTGGCAAACTGGAAAATGATGCAATTGACTTTCTGACCCGTTGCCAGGTTTGTTCATTTTGTATTCTGCTGGTTATGTATCTATGTCTTTCTTTAAAAAGAATTGTGTAGGGATTTAGTGTATTTGTTTTTAGGGTGGGTTCAGAGCAAGCTAATAGGATCACTTTCACTGAGGAAAACTTATGTGTAATGAATCACCTTTTTTGTTTGTTTTAGGACCATACTGTGCTACAAGAGCATGATATATATAACAGCAGGCTTTTTTTTACATATTGAGCAGGAGTTTCTTGTGGTGATAAAAGTGAGTTTGAAGCATTAAACTTAGAGAAATTGTTTTACCTCCCAGATTTTGAAGTTAAAACCTGAAAATTTGAGTTTTTGAAATTGTGATTTTTGGAACTTGAAGTTGTGCTTATACATGCATATTACTTGGAAAATTTGAAACTTTTGTGAGTAAAAGTGAATTTCTCCCAAAACTGGTCTGGACCAGCTTTTGGAACTTGATATTTTTTTGAAGACAGATTTTCAAAATTTGATTGAATATCTATGGCCAAACAGATATTTTAAGACAAGTGTTCTAAGCAGAAAAGGCTACTACTAAAGTACATGCTATATTCTAAGTGCCCAGTTACGTCTTGCTTAGGGATGACAACTTTAATAGGCTTCAGCTACTGTACAAAACTCAAGTCTCTGTAGACTTCTCAAAGATATGGTAGACTTTATAACAAACTTCAAGAGGCTTTCCACCAAGGACTTTATTGTGGTTCTTATGAACTAAAATTGGGACTACTTGTATTCATCTCTGTACTATTGCTTAGACATTGTAATCATAAAGAGTTATAGACCAGTGCGCATGATTGATTGTGTTTAGGAGTGACTAATAATGATGCATGGAGAAAAGATTCCGTAGTGATATTCGAGCCTAGTTATAGAAATGTGATATACATGGTGAGTAGAATGTCATCCCAAATTATTGTTATTACCATATTTGCTTAAAAGATAATTTATTGTATTTATGATATGTTTAATCATCCACCTTTCCAGAATACTGGTGTAACTGTCCTTTTTTTTTTCTTGCCTGCGATTCTAGCTAATTTGTTTTTGGACTTCTCGTTCAATAAAATGCGGTAAGATTTAGTTTCATGTGTTGTTTACTGTTACCTTCCTCACAGGATAAAGATGGTGGCTATGGAGGTGGACCTGGTCAGGCAAGTCAAATTCTCCCACTCCAGTCTTAGTGCCGTTAAATCAGATTTGTGTCAGATTCTTCATGCTTATTTTCACATTGAGTTTGATTATCTGATGTCTTCAATTGTTTTTAATATGCAGTATGCTGCTTTATTTTGTGATGATGGTTGATTTGAATATTGTAAATTTGTTAACTCTATAATTCTGTTGGAGGACTTATAATTAAAAGATAATTCTATTAGAGGGAAATAGTCATCTGTATTGATATGCATTTAACTATTGGCATGGTCAGTGGTTTGAGCTTGGGACTTCCACGTTGGAGGTATCCAGTTCGAAACGGAAACGCCTTGCCAGCGAAAGCAAGGGGTTTGCCTTCTGGGTCGAGCTCGCATGGTGCGAGTTACCTCTCCTATGTAGTTTGCGAGCTATTGCATAGGAGCGGGGTTTTACCCTTGTCATTAAAAAAAAAAAGACTATTGGCCTGGTTCTTGTTCTTTTATAAGTTAGCTTGAAACTCTTTTTCTGTTTCTTTTAGAATCACAAATTTAACAGTTCCAAGCTTCGTTTATTCTGGTCAACCTGTTAATTTTATACAGTTCTTGTGCTTCTTATCATTAAGGTTCTTTGAAGTAATACTTGTATTGTATTGCTTTTTTCAGATGCCTCATCTTGCAACTACTTATGCTGCAGTCAATTCACTAATAACTTTGG</genome_strand>
        <mrna_strand>TGGAGCGTCGAGTCCGAGAGATATACGATTATTTCTACAGCATTTCCCCCAACTCTCCGTCCGACCT.......................................................................................................CATAGAGATCGAACGTGACAAACACTTCGGTTATCTAAGCCAAGGTCTCAGAAAACTTGGTCCGTCGTTTTCCGTTTTGGATGCCAG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCGACCATGGCTTTGCTACTGGACACTTCATTCAATCGCTTTGTTGGGAGAATCTATTGGTGGCAAACTGGAAAATGATGCAATTGACTTTCTGACCCGTTGCCAG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATAAAGATGGTGGCTATGGAGGTGGACCTGGTCAG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATGCCTCATCTTGCAACTACTTATGCTGCAGTCAATTCACTAATAACTTTGG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0236E02-u8qcS/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E613174" ref_strand="+" ref_description="SGN-E613174 [62945]">
      <seq>ttggcgctgacgacatttacagtcagagtagtaatcggttatagtgaaaaaatggagtcgaggaaagtgacgaagacgctggaagatcaatgggtggtggagcgtcgagtccgagagatatacgattatttctacagcatttcccccaattccctgtccgacctcatagagctggaacgtgacaaacacttcgattatcttagccaaggtctcagaaaacttggtccgtcgttttccgttttggatgccagtcgaccatggctttgctactggatacttcattcaattgctttgttgggagaatctattgatgccaaactggaaaatgatgcgactgactttctgacccgttgccagaatactggtgcaactgtcctttttttcttgcctgcaattctagctaatttgtttttggacttctcgcgcaagaaaatgcggtaagatttagtttcacgtgttgtttacggttaccttcctcacaggataaagatggtggctatggaggtggacctggtcaggcaagtcaaattctcccactccactcttagtgccgttaaatcagatttgtgtcagcttcttcatgcttattttcacattgagcttgattttctgatgtcttcaattgtttttgatatgcagtatgctggctttantttgtgatgctggttgatttgaatattgtaaatttgtaaactctatataa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0236E02-u8qcS/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0236E02.1" temp_strand="-" temp_description="C02HBa0236E02.1  AC215430.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0236E02 sequenced_by:kribb upload_account_name:korea">
        <position start="59881" stop="56299"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="59581" g_stop="59417" g_length="165"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="164" r_length="164" r_score="0.952"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="59416" i_stop="59314" i_length="103">
            <donor d_prob="0.960" d_score="0.94"/>
            <acceptor a_prob="0.965" a_score="0.92"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="59313" g_stop="59227" g_length="87"/>
          <reference_exon_boundary r_type="cDNA" r_start="165" r_stop="251" r_length="87" r_score="0.954"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="59226" i_stop="58046" i_length="1181">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.593" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="58045" g_stop="57940" g_length="106"/>
          <reference_exon_boundary r_type="cDNA" r_start="252" r_stop="357" r_length="106" r_score="0.943"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="57939" i_stop="56944" i_length="996">
            <donor d_prob="1.000" d_score="0.92"/>
            <acceptor a_prob="0.664" a_score="0.90"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="56943" g_stop="56596" g_length="348"/>
          <reference_exon_boundary r_type="cDNA" r_start="358" r_stop="703" r_length="346" r_score="0.934"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0236E02.1" gen_strand="-" ref_id="SGN-E613174" ref_strand="+">
        <total_alignment_score>0.942</total_alignment_score>
        <cumulative_length_of_scored_exons>706</cumulative_length_of_scored_exons>
        <coverage percentage="1.004" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0236E02.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E613174" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="59581" e_stop="59417"/>
          <exon e_start="59313" e_stop="59227"/>
          <exon e_start="58045" e_stop="57940"/>
          <exon e_start="56943" e_stop="56596"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTGTCGCTGACGAAATTTACAGTCAAGAGTAGTAACCGGTTGTAGTGAAAAAATGGAGTCGAGGAAAGTGACGAAGACGCTGGAAGATCAATGGGTGGTGGAGCGTCGAGTCCGAGAGATATACGATTATTTCTACAGCATTTCCCCCAACTCTCCGTCCGACCTGTTAGCTCTCAACCTTTTTCAATTTCTAGGGTTCTTATTCCTTTATTCATCAACTTATTTTTGTGTTGATTTCTTTCTTTCTTTCTTTCTTTCTGTTATAAAGCATAGAGATCGAACGTGACAAACACTTCGGTTATCTAAGCCAAGGTCTCAGAAAACTTGGTCCGTCGTTTTCCGTTTTGGATGCCAGGTAAGTTCCCTCTATCTTTGATCGTTTCTCACCACTAGTTCACTTGTGATGTTGAAGATTCCAATTTTAACTGGTGGCTAATTGGAAAACAAAATTAAAATTTCGTATTATGAATTCAATGTGCTTTAAAAGGAAAATTATTTAGTATTGGAATGGAATTGACTTGAATGAAGTAATGTCTTAGTTAATATAACTTTATATAGCTGATCTCAACTTATTTGGGAGCTAGTCTATTGATTGATTGAGTGACTTTTTAGGAAGAAAAGAACATTGTTTGCAAGATTCAATCGTAATGAGAGAGTTGAGATTCTATGGTAACGAGAGGAAAGAACTAAACAAGCTAACGTGGATGAATATTGACCTTCAAATAAACTCTCTCCAAGCATCCACCCAAGAGTGCAGTCTAGTGGTTAATGAACTAGGTCGAGAATCACGAGGTCTCAAATTCAAAGGCAAAAGGTTAGGTGAGTTCTTCCCAAGTTCTTATACTGTCCATGTATTGAGGGACAGAGTTACCCACTATCTATGCTAGTGGGAGGTAGGACGTACCACGTGGAAATAATCGAGTTGAGCACTCCATAGTTACAAAAAATAAAAATAAAGCTCTCTCCAATGATTAGTTACATACAACATATTTGGATTGGTATAAGTTTCATAATGACTAATCTTGTCAGTGTAGGACACACTAAGGTTTTCTTCTTTTCCATTTTCTCGTGGGGGATCACAATGTTGTCCAACCAACTTGCTCATACCTCGACTAATGGATTGAAACATGCTATCTCTCACTAGCACATGTGCTATCTACCATGGGGTTTGGAACTTTGGTGTATCAGGTTCATCTGAACCCAATAAAATTCAATGTTGGGCATAAATCTGTGTGTAAATTTTTCATGGAATTACAATAAATAGTATATATGAAAGCATAAATTTTATAAATATAATGGGTTCAACAATAAAACTTGAGGGGAAGAATTCTGTGGTCTCCCATTCCCAATGTCCATTCAAACTTCATTAAGTCATGCCCTTTGGTTCCCTTTCCCATACCTCACCAACATAATATAAAAGTTTGGAAAATGTGTTCATCAAGATGGGATCTTGGCGTCTATTCTAGTCCAATGGAACCAAAGGCTATTTTGTTAACATCAACTATTTCTATGCCTTACTTAAGTTTTTCTTTCTAGTCGACCATGGCTTTGCTACTGGACACTTCATTCAATCGCTTTGTTGGGAGAATCTATTGGTGGCAAACTGGAAAATGATGCAATTGACTTTCTGACCCGTTGCCAGGTTTGTTCATTTTGTATTCTGCTGGTTATGTATCTATGTCTTTCTTTAAAAAGAATTGTGTAGGGATTTAGTGTATTTGTTTTTAGGGTGGGTTCAGAGCAAGCTAATAGGATCACTTTCACTGAGGAAAACTTATGTGTAATGAATCACCTTTTTTGTTTGTTTTAGGACCATACTGTGCTACAAGAGCATGATATATATAACAGCAGGCTTTTTTTTACATATTGAGCAGGAGTTTCTTGTGGTGATAAAAGTGAGTTTGAAGCATTAAACTTAGAGAAATTGTTTTACCTCCCAGATTTTGAAGTTAAAACCTGAAAATTTGAGTTTTTGAAATTGTGATTTTTGGAACTTGAAGTTGTGCTTATACATGCATATTACTTGGAAAATTTGAAACTTTTGTGAGTAAAAGTGAATTTCTCCCAAAACTGGTCTGGACCAGCTTTTGGAACTTGATATTTTTTTGAAGACAGATTTTCAAAATTTGATTGAATATCTATGGCCAAACAGATATTTTAAGACAAGTGTTCTAAGCAGAAAAGGCTACTACTAAAGTACATGCTATATTCTAAGTGCCCAGTTACGTCTTGCTTAGGGATGACAACTTTAATAGGCTTCAGCTACTGTACAAAACTCAAGTCTCTGTAGACTTCTCAAAGATATGGTAGACTTTATAACAAACTTCAAGAGGCTTTCCACCAAGGACTTTATTGTGGTTCTTATGAACTAAAATTGGGACTACTTGTATTCATCTCTGTACTATTGCTTAGACATTGTAATCATAAAGAGTTATAGACCAGTGCGCATGATTGATTGTGTTTAGGAGTGACTAATAATGATGCATGGAGAAAAGATTCCGTAGTGATATTCGAGCCTAGTTATAGAAATGTGATATACATGGTGAGTAGAATGTCATCCCAAATTATTGTTATTACCATATTTGCTTAAAAGATAATTTATTGTATTTATGATATGTTTAATCATCCACCTTTCCAGAATACTGGTGTAACTGTCCTTTTTTTTTTCTTGCCTGCGATTCTAGCTAATTTGTTTTTGGACTTCTCGTTCAATAAAATGCGGTAAGATTTAGTTTCATGTGTTGTTTACTGTTACCTTCCTCACAGGATAAAGATGGTGGCTATGGAGGTGGACCTGGTCAGGCAAGTCAAATTCTCCCACTCCAGTCTTAGTGCCGTTAAATCAGATTTGTGTCAGATTCTTCATGCTTATTTTCACATTGAGTTTGATTATCTGATGTCTTCAATTGTTTTTAATATGCAGTATGCT-GCTTTATTTTGTGATGATGGTTGATTTGAATATTGTAAATTTGTTAACTCTATAATT</genome_strand>
        <mrna_strand>TTGGCGCTGACGACATTTACAGTC-AGAGTAGTAATCGGTTATAGTGAAAAAATGGAGTCGAGGAAAGTGACGAAGACGCTGGAAGATCAATGGGTGGTGGAGCGTCGAGTCCGAGAGATATACGATTATTTCTACAGCATTTCCCCCAATTCCCTGTCCGACCT.......................................................................................................CATAGAGCTGGAACGTGACAAACACTTCGATTATCTTAGCCAAGGTCTCAGAAAACTTGGTCCGTCGTTTTCCGTTTTGGATGCCAG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCGACCATGGCTTTGCTACTGGATACTTCATTCAATTGCTTTGTTGGGAGAATCTATTGATGCCAAACTGGAAAATGATGCGACTGACTTTCTGACCCGTTGCCAG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AATACTGGTGCAACTGTCC---TTTTTTTCTTGCCTGCAATTCTAGCTAATTTGTTTTTGGACTTCTCGCGCAAGAAAATGCGGTAAGATTTAGTTTCACGTGTTGTTTACGGTTACCTTCCTCACAGGATAAAGATGGTGGCTATGGAGGTGGACCTGGTCAGGCAAGTCAAATTCTCCCACTCCACTCTTAGTGCCGTTAAATCAGATTTGTGTCAGCTTCTTCATGCTTATTTTCACATTGAGCTTGATTTTCTGATGTCTTCAATTGTTTTTGATATGCAGTATGCTGGCTTTANTTTGTGATGCTGGTTGATTTGAATATTGTAAATTTGTAAACTCTATATAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0236E02-u8qcS/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E427078" ref_strand="+" ref_description="SGN-E427078 [STM-47-B16]">
      <seq>agagtaaacgagcgttgatttggcgctgacgaaatttacagtcttagtactaatcggttgtagtgaaaaaatggagtcgaggaaagtgacgaagacgctggaagatcaatgggtggtggagcgtccagtccgagagatatacgattatttctacagcatttcccccaattccctgtccgacctcatagagctggaacgtgacaaacacttccattatcttagccaaggtctcagaaaacttggtccgtcgttttccgttttggatgccagtcgaccatggctttgctactggatac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0236E02-u8qcS/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0236E02.1" temp_strand="-" temp_description="C02HBa0236E02.1  AC215430.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0236E02 sequenced_by:kribb upload_account_name:korea">
        <position start="59900" stop="57720"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="59600" g_stop="59417" g_length="184"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="183" r_length="183" r_score="0.946"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="59416" i_stop="59314" i_length="103">
            <donor d_prob="0.960" d_score="0.94"/>
            <acceptor a_prob="0.965" a_score="0.90"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="59313" g_stop="59227" g_length="87"/>
          <reference_exon_boundary r_type="cDNA" r_start="184" r_stop="270" r_length="87" r_score="0.943"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="59226" i_stop="58046" i_length="1181">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.593" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="58045" g_stop="58020" g_length="26"/>
          <reference_exon_boundary r_type="cDNA" r_start="271" r_stop="296" r_length="26" r_score="0.962"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0236E02.1" gen_strand="-" ref_id="SGN-E427078" ref_strand="+">
        <total_alignment_score>0.945</total_alignment_score>
        <cumulative_length_of_scored_exons>297</cumulative_length_of_scored_exons>
        <coverage percentage="1.003" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0236E02.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E427078" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="59600" e_stop="59417"/>
          <exon e_start="59313" e_stop="59227"/>
          <exon e_start="58045" e_stop="58020"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGAGTAAACGAGCGTTGATTTGTCGCTGACGAAATTTACAGTCAAGAGTAGTAACCGGTTGTAGTGAAAAAATGGAGTCGAGGAAAGTGACGAAGACGCTGGAAGATCAATGGGTGGTGGAGCGTCGAGTCCGAGAGATATACGATTATTTCTACAGCATTTCCCCCAACTCTCCGTCCGACCTGTTAGCTCTCAACCTTTTTCAATTTCTAGGGTTCTTATTCCTTTATTCATCAACTTATTTTTGTGTTGATTTCTTTCTTTCTTTCTTTCTTTCTGTTATAAAGCATAGAGATCGAACGTGACAAACACTTCGGTTATCTAAGCCAAGGTCTCAGAAAACTTGGTCCGTCGTTTTCCGTTTTGGATGCCAGGTAAGTTCCCTCTATCTTTGATCGTTTCTCACCACTAGTTCACTTGTGATGTTGAAGATTCCAATTTTAACTGGTGGCTAATTGGAAAACAAAATTAAAATTTCGTATTATGAATTCAATGTGCTTTAAAAGGAAAATTATTTAGTATTGGAATGGAATTGACTTGAATGAAGTAATGTCTTAGTTAATATAACTTTATATAGCTGATCTCAACTTATTTGGGAGCTAGTCTATTGATTGATTGAGTGACTTTTTAGGAAGAAAAGAACATTGTTTGCAAGATTCAATCGTAATGAGAGAGTTGAGATTCTATGGTAACGAGAGGAAAGAACTAAACAAGCTAACGTGGATGAATATTGACCTTCAAATAAACTCTCTCCAAGCATCCACCCAAGAGTGCAGTCTAGTGGTTAATGAACTAGGTCGAGAATCACGAGGTCTCAAATTCAAAGGCAAAAGGTTAGGTGAGTTCTTCCCAAGTTCTTATACTGTCCATGTATTGAGGGACAGAGTTACCCACTATCTATGCTAGTGGGAGGTAGGACGTACCACGTGGAAATAATCGAGTTGAGCACTCCATAGTTACAAAAAATAAAAATAAAGCTCTCTCCAATGATTAGTTACATACAACATATTTGGATTGGTATAAGTTTCATAATGACTAATCTTGTCAGTGTAGGACACACTAAGGTTTTCTTCTTTTCCATTTTCTCGTGGGGGATCACAATGTTGTCCAACCAACTTGCTCATACCTCGACTAATGGATTGAAACATGCTATCTCTCACTAGCACATGTGCTATCTACCATGGGGTTTGGAACTTTGGTGTATCAGGTTCATCTGAACCCAATAAAATTCAATGTTGGGCATAAATCTGTGTGTAAATTTTTCATGGAATTACAATAAATAGTATATATGAAAGCATAAATTTTATAAATATAATGGGTTCAACAATAAAACTTGAGGGGAAGAATTCTGTGGTCTCCCATTCCCAATGTCCATTCAAACTTCATTAAGTCATGCCCTTTGGTTCCCTTTCCCATACCTCACCAACATAATATAAAAGTTTGGAAAATGTGTTCATCAAGATGGGATCTTGGCGTCTATTCTAGTCCAATGGAACCAAAGGCTATTTTGTTAACATCAACTATTTCTATGCCTTACTTAAGTTTTTCTTTCTAGTCGACCATGGCTTTGCTACTGGACAC</genome_strand>
        <mrna_strand>AGAGTAAACGAGCGTTGATTTGGCGCTGACGAAATTTACAGTC-TTAGTACTAATCGGTTGTAGTGAAAAAATGGAGTCGAGGAAAGTGACGAAGACGCTGGAAGATCAATGGGTGGTGGAGCGTCCAGTCCGAGAGATATACGATTATTTCTACAGCATTTCCCCCAATTCCCTGTCCGACCT.......................................................................................................CATAGAGCTGGAACGTGACAAACACTTCCATTATCTTAGCCAAGGTCTCAGAAAACTTGGTCCGTCGTTTTCCGTTTTGGATGCCAG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCGACCATGGCTTTGCTACTGGATAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0236E02-u8qcS/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E721018" ref_strand="+" ref_description="SGN-E721018 [FC12CB04]">
      <seq>gggagttgaagcaggtcgcttctaagtactgggccttcgccctttcctataaaaagccgttacgtctctccagtaagtcatctcagccaactggagtttattcttctctctgtttttagtaagtacgaaacccttttctgtaaatccaaaaaaaattccgatggcgatgaggcgtgtagcttctacagcagctcgtgctattgcttcaccttcatccttagtttttaccagagaacttcaggcttcccctggccccaaaaagattgtgggtgttttctacaaagcaaatgaatatgctgaaatgaaccccaactttttgggctgtgcagaaaatgccttggggatacgtgaatggttagagtctaaaggtcatcagtacatagtcactcctgacaaagaaggaccaaattgtgagcttgagaaacacattcctgatctccatgtgttgatttcgaccccttttcatcctgcctatgtcacggctgaaaggatcaagaaggcaaaaaatctacaacttctgctgacagctggaattggatcaaatcatgttgatctgaaagctgctgctgctgctggattgacagtagcaaaggtcactggaagcaatactgtctcagttgcggaagatgaactgatgcgaatcttaattcttgtccgaaatttcttacctggacatcatcaggttatcaatggggagtggaatgttgctgcaattgcgcacagagcttatgatttggaaggcaagactgttggaactgttggtgcaggacgtattggcaaacttttactccagcgattgaaaccatttaactgtaatctactttaccatgaccg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0236E02-u8qcS/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0236E02.1" temp_strand="+" temp_description="C02HBa0236E02.1  AC215430.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0236E02 sequenced_by:kribb upload_account_name:korea">
        <position start="65150" stop="68485"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="65449" g_stop="65689" g_length="241"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="241" r_length="241" r_score="0.996"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="65690" i_stop="66849" i_length="1160">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="66850" g_stop="67021" g_length="172"/>
          <reference_exon_boundary r_type="cDNA" r_start="242" r_stop="413" r_length="172" r_score="0.994"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="67022" i_stop="67764" i_length="743">
            <donor d_prob="0.994" d_score="0.98"/>
            <acceptor a_prob="0.987" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="67765" g_stop="68185" g_length="421"/>
          <reference_exon_boundary r_type="cDNA" r_start="414" r_stop="834" r_length="421" r_score="0.990"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0236E02.1" gen_strand="+" ref_id="SGN-E721018" ref_strand="+">
        <total_alignment_score>0.993</total_alignment_score>
        <cumulative_length_of_scored_exons>834</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0236E02.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E721018" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="65449" e_stop="65689"/>
          <exon e_start="66850" e_stop="67021"/>
          <exon e_start="67765" e_stop="68185"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGGAGTTGAAGCAGGTCGCTTCTAAGTACTGGGCCTTCGCCCTTTCCTATAAAAAGCCGTTACGTCTCTCCAGTAAGTCATCTCAGCCAACTGGAGTTTATTCTTCTCTCTGTTTTTAGTAAGTACGAAACCCTTTTCTGTAAATCCAAAAAAAATTCCGATGGCGATGAGGCGTGTAGCTTCTACAGCAGCTCGTGCTATTGCTTCACCTTCATCCTTAGTTTTTACCAGAGAACTTCAGGTAACTAGCCATTTCTCCTCAATAGCCACTTTTTGTTGCTTTTGTTTTATATGACCTAGTTTTCGCCCTTTGATGAATTATCGGAAACCGGCACGGATCAACTCCGATTTTTCGAGAATCAAGTGAGTTGGAGATTGGAACAGAGGAAACTAAAGGAATTTAACCGTGTAAAGGAAAAAATTAAACACACTGTATTTGGTGCTCTACCCCTCGTCTCTTCTTTTTGGCTTTCCCCGTACTCTACACACCAAATGAAATGGCTCGGATATGAAAGGACTAATAACTTTTCAGTTTTCATTACTGCGTCCTTTTTTAAGCTTTCAGTTTTAATTTGCGTGAATATACCTAATTTTTATTAGGGTAGAGTTATATGTTTCAAATTAAATTGCTACCAAGTTAAATTTAAGAATGTTACATAAATTTAGAGACGGCAAGTTTATATACCAAGAAGGGTACTCCTTCATCCACAGAGAAACGGTGTCCAGTTCGAGTATGGGCGTGAATCTAGATATAGTTAATTCCAATGCAGATATCAGACATCGAGTGAGGAAAAAAAAGATTTTATTAATTTGTTATTTTTAGGTTGCTTTTCCTTTAACTGAAAATCTAACCCGGCAGGACCACAACAGTTCTTTTCCGATCATTACTAATGATACTTGATTTTCACGTGCGATTTCTGATATTTTTATACGGAGTAGGTGAAGAGTGAAATGTTTCACGGGTCTCAAGGACAATGGCAGCAGTGCTTCATTTTTTTTTGCATCTTCACGTGCTATATTATTACTTTGTTTATACTAGTTCGACTTGGAAAATCTTTTCATATTCAGTTGTCTGGGGAATAAATAAGATATTTCTTATTTTTTGATTAAAAAAAGAAGAAGATATTTCTTATTTAAAGAAGTGACAAATTGTACTAACTCATTTACCATGCCTAATATATTATATGTGACAATGATGATTTTTTTTAACTATTAATTGTTAGTTTGGACAAAAATGATCAAAGCAAGTATATTGAATAATGCTTATTTCTTGCCAACTGGTGCATCTACGAGATTATAGGAGTTGGATTATAATTTTAGCACATCCAGCATGCTTATATGACCTTAAAATATTCATGTATATTCTGTCCACTCACCTTTTATTTCTTCATTATTTTACAGGCTTCCCCTGGCCCCAAAAAGATTGTGGGTGTTTTCTACAAAGCAAATGAATATGCTGAAATGAACCCCAACTTTTTGGGCTGTGCAGAAAATGCCTTGGGGATACGTGAATGGTTAGAGTCTAAAGGTCATCAGTACATAGTCACTCCTGACAAAGAAGGACCAGATTGTGGTTAGTTCCTGCTAATCTATAATCTCTCATGTTCTATCCATTATCCCACTGAAGCCTATGCATTTCTAAAGATAATTTCTTTACCCTTCATGCTTGTACAACTAAACACATCTTAAAAGGAGTATTTTTGCATTTAAAACATGCATATATGTGCTGAAGTTTTTTAAAAATATATGGCTCACGTGAGGAGAATATAACGGTCATAGCAGGAACATTTATTTAGATAAAGAGCAAAGCAAAGTAAACAATATTTGCTTTGTTAGTGTTGGTCCTTTGCTGCTAGTGAATTATGATCAGGACATTGTGAGGTAGTTTCTTGCAGGAGGGAAAAAAAGAGTGTATTTTACCTTGATATACAGGTGTGCATTTGCAAAACGTCTATACTTCAGGACTCAGGTGTAAGTTGTACTAGTTTGATAAGACTATGGCTAAATTTTGTAATTTAAACAAGGATTTATCAAAGTCGCAGGGGCTTGTTTAGTTGTTGAGTAGAGTGCACACATGGATGCTTTAGTGATTTTCTGATGGATGACATGCTTAGTGTAAATCCTTGCTTATTAGTATCTTTTATCATGAGAAAGAATGGTGCCCTAGTCTGACACACAAACTACTCTGTGTCTTAGTTTTTCACTGTTGAATCCTTTACTATGCTCTATGCAAAGAAATTTCTCCTGAGCTAAAGTTTTTGAGTGTGTCCATCTATAATAGCTTCTTTTTTTTTTCCCATGACTTTCTCTCTGCAGAGCTTGAGAAACACATTCCTGATCTCCATGTGTTGATTTCGACCCCTTTTCATCCTGCCTATGTCACGGCTGAAAGGATCAAGAAGGCAAAAAATCTACAACTTCTGCTGACAGCTGGAATTGGATCAGATCATGTTGATCTGAAAGCTGCTGCTGCTGCTGGATTGACAGTAGCAGAGGTCACTGGAAGCAATACTGTCTCAGTTGCGGAAGATGAACTGATGCGAATCTTAATTCTTGTCCGAAATTTCTTACCTGGACATCATCAGGTTATCAATGGGGAGTGGAATGTTGCTGCAATTGCGCACAGAGCTTATGATTTGGAAGGCAAGACTGTTGGAACTGTTGGTGCAGGACGTATTGGCAGACTTTTACTCCAGCGATTGAAGCCATTTAACTGTAATCTACTTTACCATGACCG</genome_strand>
        <mrna_strand>GGGAGTTGAAGCAGGTCGCTTCTAAGTACTGGGCCTTCGCCCTTTCCTATAAAAAGCCGTTACGTCTCTCCAGTAAGTCATCTCAGCCAACTGGAGTTTATTCTTCTCTCTGTTTTTAGTAAGTACGAAACCCTTTTCTGTAAATCCAAAAAAAATTCCGATGGCGATGAGGCGTGTAGCTTCTACAGCAGCTCGTGCTATTGCTTCACCTTCATCCTTAGTTTTTACCAGAGAACTTCAG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCTTCCCCTGGCCCCAAAAAGATTGTGGGTGTTTTCTACAAAGCAAATGAATATGCTGAAATGAACCCCAACTTTTTGGGCTGTGCAGAAAATGCCTTGGGGATACGTGAATGGTTAGAGTCTAAAGGTCATCAGTACATAGTCACTCCTGACAAAGAAGGACCAAATTGTG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGCTTGAGAAACACATTCCTGATCTCCATGTGTTGATTTCGACCCCTTTTCATCCTGCCTATGTCACGGCTGAAAGGATCAAGAAGGCAAAAAATCTACAACTTCTGCTGACAGCTGGAATTGGATCAAATCATGTTGATCTGAAAGCTGCTGCTGCTGCTGGATTGACAGTAGCAAAGGTCACTGGAAGCAATACTGTCTCAGTTGCGGAAGATGAACTGATGCGAATCTTAATTCTTGTCCGAAATTTCTTACCTGGACATCATCAGGTTATCAATGGGGAGTGGAATGTTGCTGCAATTGCGCACAGAGCTTATGATTTGGAAGGCAAGACTGTTGGAACTGTTGGTGCAGGACGTATTGGCAAACTTTTACTCCAGCGATTGAAACCATTTAACTGTAATCTACTTTACCATGACCG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0236E02-u8qcS/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E747059" ref_strand="+" ref_description="SGN-E747059 [GI|56562180]">
      <seq>caggtcgcttctaagtactgggccttcgccctttcctataaaaagccgttacgtctctccagtaagtcatctcagccaactggagtttattcttctctctgtttttagtaagtacgaaacccttttctgtaaatccaaaaaaaattccgatggcgatgaggcgtgtagcttctacagcagctcgtgctattgcttcaccttcatccttagtttttaccagagaacttcaggcttcccctggccccaaaaagattgtgggtgttttctacaaagcaaatgaatatgctgaaatgaaccccaactttttgggctgtgcagaaaatgccttggggatacgtgaatggttagagtctaaaggtcatcagtacatagtcactcctgacaaagaaggaccagattgtgagcttgagaaacacattcctgatctccatgtgttgatttcgaccccttttcatcctgcctatgtcacggctgaaaggatcaagaaggcaaaaaatctacaacttctgctgacagctggaattggatcagatcatgttgatctgaaagctgctgctgctgctggattgacagtagcagaggtcactggaagcaatactgtctcagttgcggaagatgaactgatgcgaatcttaattcttgtccgaaatttcttacctggacatcatcaggttatcaatggggagtggaatgttgctgcaattgcgcacagagcttatgatttggaaggcaagactgttggaactgttggtgcaggacgtattggcagacttttactccagcgattgaagccatttaactgtaatctactttaccatgaccgtcttaagatggattctgagctagagaatcaaattggagcaaagtttgaggaagatctcgataagatgctctcgaaatgtgacatagtggtcatcaatacgcctcttacagagaaaacaaaaggaatgtttgacaaggaaagaattgcaaagttgaagaagggagttctaattgtaaacaatgctcgaggagcaattatggacactcaagcagttgttgatgcttgtaacagcggtcatattgcaggatacagtggagatgtttggtacccacaaccagctcccaaggaccatctatggcgttacatgccaaaccaagctatgactcctcacatttctgggactaccattgatgcacagttgaggtatgcagctggaacaaaggatatgttggacaggtacttcaagggtgaggatttccctgctgaaaattacattgtcaaggatggggaattggcacctcagtatcgctaaattatttatgtatagagttgtgtctagatttctgtgttaaataaactggcaagccgtgtcttcaataagctgataaaattggctactttatgttcttctagaactctaatgcagtttttctccgggttagctgtaacttttgtgatggaaacatatgtcctcttctgtgatggaggtctatgtatgatcctccagtgtctttcttgagtctataactgaacttccttgctgtggtagttgtactggtgttcctggacattttatgttttaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0236E02-u8qcS/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0236E02.1" temp_strand="+" temp_description="C02HBa0236E02.1  AC215430.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0236E02 sequenced_by:kribb upload_account_name:korea">
        <position start="65160" stop="70321"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="65460" g_stop="65689" g_length="230"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="230" r_length="230" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="65690" i_stop="66849" i_length="1160">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="66850" g_stop="67021" g_length="172"/>
          <reference_exon_boundary r_type="cDNA" r_start="231" r_stop="402" r_length="172" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="67022" i_stop="67764" i_length="743">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="0.987" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="67765" g_stop="68305" g_length="541"/>
          <reference_exon_boundary r_type="cDNA" r_start="403" r_stop="943" r_length="541" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="68306" i_stop="69046" i_length="741">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.768" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="69047" g_stop="69171" g_length="125"/>
          <reference_exon_boundary r_type="cDNA" r_start="944" r_stop="1068" r_length="125" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="69172" i_stop="69406" i_length="235">
            <donor d_prob="0.983" d_score="1.00"/>
            <acceptor a_prob="0.964" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="69407" g_stop="69519" g_length="113"/>
          <reference_exon_boundary r_type="cDNA" r_start="1069" r_stop="1181" r_length="113" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="69520" i_stop="69630" i_length="111">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.989" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="69631" g_stop="70021" g_length="391"/>
          <reference_exon_boundary r_type="cDNA" r_start="1182" r_stop="1572" r_length="391" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0236E02.1" gen_strand="+" ref_id="SGN-E747059" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>1572</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0236E02.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E747059" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="65460" e_stop="65689"/>
          <exon e_start="66850" e_stop="67021"/>
          <exon e_start="67765" e_stop="68305"/>
          <exon e_start="69047" e_stop="69171"/>
          <exon e_start="69407" e_stop="69519"/>
          <exon e_start="69631" e_stop="70021"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAGGTCGCTTCTAAGTACTGGGCCTTCGCCCTTTCCTATAAAAAGCCGTTACGTCTCTCCAGTAAGTCATCTCAGCCAACTGGAGTTTATTCTTCTCTCTGTTTTTAGTAAGTACGAAACCCTTTTCTGTAAATCCAAAAAAAATTCCGATGGCGATGAGGCGTGTAGCTTCTACAGCAGCTCGTGCTATTGCTTCACCTTCATCCTTAGTTTTTACCAGAGAACTTCAGGTAACTAGCCATTTCTCCTCAATAGCCACTTTTTGTTGCTTTTGTTTTATATGACCTAGTTTTCGCCCTTTGATGAATTATCGGAAACCGGCACGGATCAACTCCGATTTTTCGAGAATCAAGTGAGTTGGAGATTGGAACAGAGGAAACTAAAGGAATTTAACCGTGTAAAGGAAAAAATTAAACACACTGTATTTGGTGCTCTACCCCTCGTCTCTTCTTTTTGGCTTTCCCCGTACTCTACACACCAAATGAAATGGCTCGGATATGAAAGGACTAATAACTTTTCAGTTTTCATTACTGCGTCCTTTTTTAAGCTTTCAGTTTTAATTTGCGTGAATATACCTAATTTTTATTAGGGTAGAGTTATATGTTTCAAATTAAATTGCTACCAAGTTAAATTTAAGAATGTTACATAAATTTAGAGACGGCAAGTTTATATACCAAGAAGGGTACTCCTTCATCCACAGAGAAACGGTGTCCAGTTCGAGTATGGGCGTGAATCTAGATATAGTTAATTCCAATGCAGATATCAGACATCGAGTGAGGAAAAAAAAGATTTTATTAATTTGTTATTTTTAGGTTGCTTTTCCTTTAACTGAAAATCTAACCCGGCAGGACCACAACAGTTCTTTTCCGATCATTACTAATGATACTTGATTTTCACGTGCGATTTCTGATATTTTTATACGGAGTAGGTGAAGAGTGAAATGTTTCACGGGTCTCAAGGACAATGGCAGCAGTGCTTCATTTTTTTTTGCATCTTCACGTGCTATATTATTACTTTGTTTATACTAGTTCGACTTGGAAAATCTTTTCATATTCAGTTGTCTGGGGAATAAATAAGATATTTCTTATTTTTTGATTAAAAAAAGAAGAAGATATTTCTTATTTAAAGAAGTGACAAATTGTACTAACTCATTTACCATGCCTAATATATTATATGTGACAATGATGATTTTTTTTAACTATTAATTGTTAGTTTGGACAAAAATGATCAAAGCAAGTATATTGAATAATGCTTATTTCTTGCCAACTGGTGCATCTACGAGATTATAGGAGTTGGATTATAATTTTAGCACATCCAGCATGCTTATATGACCTTAAAATATTCATGTATATTCTGTCCACTCACCTTTTATTTCTTCATTATTTTACAGGCTTCCCCTGGCCCCAAAAAGATTGTGGGTGTTTTCTACAAAGCAAATGAATATGCTGAAATGAACCCCAACTTTTTGGGCTGTGCAGAAAATGCCTTGGGGATACGTGAATGGTTAGAGTCTAAAGGTCATCAGTACATAGTCACTCCTGACAAAGAAGGACCAGATTGTGGTTAGTTCCTGCTAATCTATAATCTCTCATGTTCTATCCATTATCCCACTGAAGCCTATGCATTTCTAAAGATAATTTCTTTACCCTTCATGCTTGTACAACTAAACACATCTTAAAAGGAGTATTTTTGCATTTAAAACATGCATATATGTGCTGAAGTTTTTTAAAAATATATGGCTCACGTGAGGAGAATATAACGGTCATAGCAGGAACATTTATTTAGATAAAGAGCAAAGCAAAGTAAACAATATTTGCTTTGTTAGTGTTGGTCCTTTGCTGCTAGTGAATTATGATCAGGACATTGTGAGGTAGTTTCTTGCAGGAGGGAAAAAAAGAGTGTATTTTACCTTGATATACAGGTGTGCATTTGCAAAACGTCTATACTTCAGGACTCAGGTGTAAGTTGTACTAGTTTGATAAGACTATGGCTAAATTTTGTAATTTAAACAAGGATTTATCAAAGTCGCAGGGGCTTGTTTAGTTGTTGAGTAGAGTGCACACATGGATGCTTTAGTGATTTTCTGATGGATGACATGCTTAGTGTAAATCCTTGCTTATTAGTATCTTTTATCATGAGAAAGAATGGTGCCCTAGTCTGACACACAAACTACTCTGTGTCTTAGTTTTTCACTGTTGAATCCTTTACTATGCTCTATGCAAAGAAATTTCTCCTGAGCTAAAGTTTTTGAGTGTGTCCATCTATAATAGCTTCTTTTTTTTTTCCCATGACTTTCTCTCTGCAGAGCTTGAGAAACACATTCCTGATCTCCATGTGTTGATTTCGACCCCTTTTCATCCTGCCTATGTCACGGCTGAAAGGATCAAGAAGGCAAAAAATCTACAACTTCTGCTGACAGCTGGAATTGGATCAGATCATGTTGATCTGAAAGCTGCTGCTGCTGCTGGATTGACAGTAGCAGAGGTCACTGGAAGCAATACTGTCTCAGTTGCGGAAGATGAACTGATGCGAATCTTAATTCTTGTCCGAAATTTCTTACCTGGACATCATCAGGTTATCAATGGGGAGTGGAATGTTGCTGCAATTGCGCACAGAGCTTATGATTTGGAAGGCAAGACTGTTGGAACTGTTGGTGCAGGACGTATTGGCAGACTTTTACTCCAGCGATTGAAGCCATTTAACTGTAATCTACTTTACCATGACCGTCTTAAGATGGATTCTGAGCTAGAGAATCAAATTGGAGCAAAGTTTGAGGAAGATCTCGATAAGATGCTCTCGAAATGTGACATAGTGGTCATCAATACGCCTCTTACAGAGAAAACAAAGTAAGGTTTCTGTTTCTGTAATTACCCGTCGTAAACCTATACAATAATATTTATTGACAAAGCTTCTTATATTCAAGTTATTTTAACAATGACTTAATTATGAAATGAACTAAGTAAGCTAAAGTGAATATTCATTGAGAATGAAATATGATATTTAGCGAAGGGAAGGAGAATCTTTGGTGTCATCGTAATTTTTTGGTATCACTCTAGATCATATATAAAGTAGTTGTATATTTAGATTCCCCGATTGTATTCCCTAAGTTAAGAAATTCTCTTGAGCATCCACCATATACTATGATACATGACTTTGGCTAAGCTCAAAAAGACTATCTCAATGATGGCCCTCCATGGATTCTCCACCTATATAAGCCACGGCTAAAGAAAAATTGCTTGGCCAAGTTGTCTTTTACCTTTGGCATGATGCAAAAAACATTTGATATTCTTTCTGTGTGAACCACTGCTACGAGTAATATGTTCTTAGAGATCATGTTTTCTTTTTGTTCTTCCTTTAATTTTCTATTTGAAGATTTGTCATCAGTTAGAGGTCATCGGTAGGATGATAGATGTTCTCAGCAACTTGTGTTGCCAGAATAATATGATTGCCAATGGAGTATTTTTAAGATTCTTGGAGATGTAAGAGTTGTTTCTGTCCATACATCACTCTTCTCATGTCACTAAGGTCATTGATTGTTTCCATGTGCTATATCGCAAATTGCTCACAATTTTAACTATGTGATCCAGAGGAATGTTTGACAAGGAAAGAATTGCAAAGTTGAAGAAGGGAGTTCTAATTGTAAACAATGCTCGAGGAGCAATTATGGACACTCAAGCAGTTGTTGATGCTTGTAACAGCGGTCATATTGCAGGTATTTTAACATAACTTGAACACATCATCCAGAGATGAGCCCTCAGCCTTAATATCAATTGAACACACCATTATATTTTTTTCTTCAATTCTTGCTTGTTTCTTTTCTTCAATATATTTTATCGACATTTGGAAGTAGTTCCATATCTTGTGGAATTGCCGAATCCTTTGAAGAAAGAAGTACTTCTAAAACTATATTGAGTTCTTTTCTTTCGGTTATTTCCCCCCAAATTTAGGATACAGTGGAGATGTTTGGTACCCACAACCAGCTCCCAAGGACCATCTATGGCGTTACATGCCAAACCAAGCTATGACTCCTCACATTTCTGGGACTACCATTGATGCACAGGTTTGTAAATACTCTGTTTCTCTAATTTCTTTAGGCTTTGCTTTTTCTTTACTTTCACGACATTATAATTGCGATTAAACTGAGAGAAGCTTGTTACTTTCAATTTCGCAGTTGAGGTATGCAGCTGGAACAAAGGATATGTTGGACAGGTACTTCAAGGGTGAGGATTTCCCTGCTGAAAATTACATTGTCAAGGATGGGGAATTGGCACCTCAGTATCGCTAAATTATTTATGTATAGAGTTGTGTCTAGATTTCTGTGTTAAATAAACTGGCAAGCCGTGTCTTCAATAAGCTGATAAAATTGGCTACTTTATGTTCTTCTAGAACTCTAATGCAGTTTTTCTCCGGGTTAGCTGTAACTTTTGTGATGGAAACATATGTCCTCTTCTGTGATGGAGGTCTATGTATGATCCTCCAGTGTCTTTCTTGAGTCTATAACTGAACTTCCTTGCTGTGGTAGTTGTACTGGTGTTCCTGGACATTTTATGTTTTAAAAAAAA</genome_strand>
        <mrna_strand>CAGGTCGCTTCTAAGTACTGGGCCTTCGCCCTTTCCTATAAAAAGCCGTTACGTCTCTCCAGTAAGTCATCTCAGCCAACTGGAGTTTATTCTTCTCTCTGTTTTTAGTAAGTACGAAACCCTTTTCTGTAAATCCAAAAAAAATTCCGATGGCGATGAGGCGTGTAGCTTCTACAGCAGCTCGTGCTATTGCTTCACCTTCATCCTTAGTTTTTACCAGAGAACTTCAG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCTTCCCCTGGCCCCAAAAAGATTGTGGGTGTTTTCTACAAAGCAAATGAATATGCTGAAATGAACCCCAACTTTTTGGGCTGTGCAGAAAATGCCTTGGGGATACGTGAATGGTTAGAGTCTAAAGGTCATCAGTACATAGTCACTCCTGACAAAGAAGGACCAGATTGTG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGCTTGAGAAACACATTCCTGATCTCCATGTGTTGATTTCGACCCCTTTTCATCCTGCCTATGTCACGGCTGAAAGGATCAAGAAGGCAAAAAATCTACAACTTCTGCTGACAGCTGGAATTGGATCAGATCATGTTGATCTGAAAGCTGCTGCTGCTGCTGGATTGACAGTAGCAGAGGTCACTGGAAGCAATACTGTCTCAGTTGCGGAAGATGAACTGATGCGAATCTTAATTCTTGTCCGAAATTTCTTACCTGGACATCATCAGGTTATCAATGGGGAGTGGAATGTTGCTGCAATTGCGCACAGAGCTTATGATTTGGAAGGCAAGACTGTTGGAACTGTTGGTGCAGGACGTATTGGCAGACTTTTACTCCAGCGATTGAAGCCATTTAACTGTAATCTACTTTACCATGACCGTCTTAAGATGGATTCTGAGCTAGAGAATCAAATTGGAGCAAAGTTTGAGGAAGATCTCGATAAGATGCTCTCGAAATGTGACATAGTGGTCATCAATACGCCTCTTACAGAGAAAACAAA.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGGAATGTTTGACAAGGAAAGAATTGCAAAGTTGAAGAAGGGAGTTCTAATTGTAAACAATGCTCGAGGAGCAATTATGGACACTCAAGCAGTTGTTGATGCTTGTAACAGCGGTCATATTGCAG...........................................................................................................................................................................................................................................GATACAGTGGAGATGTTTGGTACCCACAACCAGCTCCCAAGGACCATCTATGGCGTTACATGCCAAACCAAGCTATGACTCCTCACATTTCTGGGACTACCATTGATGCACAG...............................................................................................................TTGAGGTATGCAGCTGGAACAAAGGATATGTTGGACAGGTACTTCAAGGGTGAGGATTTCCCTGCTGAAAATTACATTGTCAAGGATGGGGAATTGGCACCTCAGTATCGCTAAATTATTTATGTATAGAGTTGTGTCTAGATTTCTGTGTTAAATAAACTGGCAAGCCGTGTCTTCAATAAGCTGATAAAATTGGCTACTTTATGTTCTTCTAGAACTCTAATGCAGTTTTTCTCCGGGTTAGCTGTAACTTTTGTGATGGAAACATATGTCCTCTTCTGTGATGGAGGTCTATGTATGATCCTCCAGTGTCTTTCTTGAGTCTATAACTGAACTTCCTTGCTGTGGTAGTTGTACTGGTGTTCCTGGACATTTTATGTTTTAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0236E02-u8qcS/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E721102" ref_strand="+" ref_description="SGN-E721102 [FC12DB05]">
      <seq>gcggccaaatcggccgaattgggagttgaagcaggtcgcttctaagtactgggccttcgccctttcctataaaaagccgttacgtctctccagtaagtcatctcagccaactggagtttattcttctctctgtttttagtaagtacgaaacccttttctgtaaatccaaaaaaaattccgatggcgatgaggcgtgtagcttctacagcagctcgtgctattgcttcaccttcatccttagtttttaccagagaacttcaggcttcccctggccccaaaaagattgtgggtgttttctacaaagcaaatgaatatgctgaaatgaaccccaactttttgggctgtgcagaaaatgccttggggatacgtgaatggttagagtctaaaggtcatcagtacatagtcactcctgacaaagaaggaccagattgtgagcttgagaaacacattcctgatctccatgtgttgatttcgaccccttttcatcctgcctatgtcacggctgaaaggatcaagaaggcaaaaaatctacaacttctgctgacagctggaattggatcagatcatgttgatctgaaagctgctgctgctgctggattgacagtagcagaggtcactggaagcaatactgtctcagttgcggaagatgaactgatgcgaatcttaattcttgtccgaaatttcttacctggacatcatcaggttatcaatggggagtggaatgttgctgcaattgcgcacagagcttatgatttggaaggcaagactgttggaactgttggtgcaggacgta</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0236E02-u8qcS/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0236E02.1" temp_strand="+" temp_description="C02HBa0236E02.1  AC215430.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0236E02 sequenced_by:kribb upload_account_name:korea">
        <position start="65146" stop="68424"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="65463" g_stop="65689" g_length="227"/>
          <reference_exon_boundary r_type="cDNA" r_start="35" r_stop="261" r_length="227" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="65690" i_stop="66849" i_length="1160">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="66850" g_stop="67021" g_length="172"/>
          <reference_exon_boundary r_type="cDNA" r_start="262" r_stop="433" r_length="172" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="67022" i_stop="67764" i_length="743">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="0.987" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="67765" g_stop="68124" g_length="360"/>
          <reference_exon_boundary r_type="cDNA" r_start="434" r_stop="793" r_length="360" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0236E02.1" gen_strand="+" ref_id="SGN-E721102" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>759</cumulative_length_of_scored_exons>
        <coverage percentage="0.957" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0236E02.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E721102" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="65463" e_stop="65689"/>
          <exon e_start="66850" e_stop="67021"/>
          <exon e_start="67765" e_stop="68124"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTCGCTTCTAAGTACTGGGCCTTCGCCCTTTCCTATAAAAAGCCGTTACGTCTCTCCAGTAAGTCATCTCAGCCAACTGGAGTTTATTCTTCTCTCTGTTTTTAGTAAGTACGAAACCCTTTTCTGTAAATCCAAAAAAAATTCCGATGGCGATGAGGCGTGTAGCTTCTACAGCAGCTCGTGCTATTGCTTCACCTTCATCCTTAGTTTTTACCAGAGAACTTCAGGTAACTAGCCATTTCTCCTCAATAGCCACTTTTTGTTGCTTTTGTTTTATATGACCTAGTTTTCGCCCTTTGATGAATTATCGGAAACCGGCACGGATCAACTCCGATTTTTCGAGAATCAAGTGAGTTGGAGATTGGAACAGAGGAAACTAAAGGAATTTAACCGTGTAAAGGAAAAAATTAAACACACTGTATTTGGTGCTCTACCCCTCGTCTCTTCTTTTTGGCTTTCCCCGTACTCTACACACCAAATGAAATGGCTCGGATATGAAAGGACTAATAACTTTTCAGTTTTCATTACTGCGTCCTTTTTTAAGCTTTCAGTTTTAATTTGCGTGAATATACCTAATTTTTATTAGGGTAGAGTTATATGTTTCAAATTAAATTGCTACCAAGTTAAATTTAAGAATGTTACATAAATTTAGAGACGGCAAGTTTATATACCAAGAAGGGTACTCCTTCATCCACAGAGAAACGGTGTCCAGTTCGAGTATGGGCGTGAATCTAGATATAGTTAATTCCAATGCAGATATCAGACATCGAGTGAGGAAAAAAAAGATTTTATTAATTTGTTATTTTTAGGTTGCTTTTCCTTTAACTGAAAATCTAACCCGGCAGGACCACAACAGTTCTTTTCCGATCATTACTAATGATACTTGATTTTCACGTGCGATTTCTGATATTTTTATACGGAGTAGGTGAAGAGTGAAATGTTTCACGGGTCTCAAGGACAATGGCAGCAGTGCTTCATTTTTTTTTGCATCTTCACGTGCTATATTATTACTTTGTTTATACTAGTTCGACTTGGAAAATCTTTTCATATTCAGTTGTCTGGGGAATAAATAAGATATTTCTTATTTTTTGATTAAAAAAAGAAGAAGATATTTCTTATTTAAAGAAGTGACAAATTGTACTAACTCATTTACCATGCCTAATATATTATATGTGACAATGATGATTTTTTTTAACTATTAATTGTTAGTTTGGACAAAAATGATCAAAGCAAGTATATTGAATAATGCTTATTTCTTGCCAACTGGTGCATCTACGAGATTATAGGAGTTGGATTATAATTTTAGCACATCCAGCATGCTTATATGACCTTAAAATATTCATGTATATTCTGTCCACTCACCTTTTATTTCTTCATTATTTTACAGGCTTCCCCTGGCCCCAAAAAGATTGTGGGTGTTTTCTACAAAGCAAATGAATATGCTGAAATGAACCCCAACTTTTTGGGCTGTGCAGAAAATGCCTTGGGGATACGTGAATGGTTAGAGTCTAAAGGTCATCAGTACATAGTCACTCCTGACAAAGAAGGACCAGATTGTGGTTAGTTCCTGCTAATCTATAATCTCTCATGTTCTATCCATTATCCCACTGAAGCCTATGCATTTCTAAAGATAATTTCTTTACCCTTCATGCTTGTACAACTAAACACATCTTAAAAGGAGTATTTTTGCATTTAAAACATGCATATATGTGCTGAAGTTTTTTAAAAATATATGGCTCACGTGAGGAGAATATAACGGTCATAGCAGGAACATTTATTTAGATAAAGAGCAAAGCAAAGTAAACAATATTTGCTTTGTTAGTGTTGGTCCTTTGCTGCTAGTGAATTATGATCAGGACATTGTGAGGTAGTTTCTTGCAGGAGGGAAAAAAAGAGTGTATTTTACCTTGATATACAGGTGTGCATTTGCAAAACGTCTATACTTCAGGACTCAGGTGTAAGTTGTACTAGTTTGATAAGACTATGGCTAAATTTTGTAATTTAAACAAGGATTTATCAAAGTCGCAGGGGCTTGTTTAGTTGTTGAGTAGAGTGCACACATGGATGCTTTAGTGATTTTCTGATGGATGACATGCTTAGTGTAAATCCTTGCTTATTAGTATCTTTTATCATGAGAAAGAATGGTGCCCTAGTCTGACACACAAACTACTCTGTGTCTTAGTTTTTCACTGTTGAATCCTTTACTATGCTCTATGCAAAGAAATTTCTCCTGAGCTAAAGTTTTTGAGTGTGTCCATCTATAATAGCTTCTTTTTTTTTTCCCATGACTTTCTCTCTGCAGAGCTTGAGAAACACATTCCTGATCTCCATGTGTTGATTTCGACCCCTTTTCATCCTGCCTATGTCACGGCTGAAAGGATCAAGAAGGCAAAAAATCTACAACTTCTGCTGACAGCTGGAATTGGATCAGATCATGTTGATCTGAAAGCTGCTGCTGCTGCTGGATTGACAGTAGCAGAGGTCACTGGAAGCAATACTGTCTCAGTTGCGGAAGATGAACTGATGCGAATCTTAATTCTTGTCCGAAATTTCTTACCTGGACATCATCAGGTTATCAATGGGGAGTGGAATGTTGCTGCAATTGCGCACAGAGCTTATGATTTGGAAGGCAAGACTGTTGGAACTGTTGGTGCAGGACGTA</genome_strand>
        <mrna_strand>GTCGCTTCTAAGTACTGGGCCTTCGCCCTTTCCTATAAAAAGCCGTTACGTCTCTCCAGTAAGTCATCTCAGCCAACTGGAGTTTATTCTTCTCTCTGTTTTTAGTAAGTACGAAACCCTTTTCTGTAAATCCAAAAAAAATTCCGATGGCGATGAGGCGTGTAGCTTCTACAGCAGCTCGTGCTATTGCTTCACCTTCATCCTTAGTTTTTACCAGAGAACTTCAG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCTTCCCCTGGCCCCAAAAAGATTGTGGGTGTTTTCTACAAAGCAAATGAATATGCTGAAATGAACCCCAACTTTTTGGGCTGTGCAGAAAATGCCTTGGGGATACGTGAATGGTTAGAGTCTAAAGGTCATCAGTACATAGTCACTCCTGACAAAGAAGGACCAGATTGTG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGCTTGAGAAACACATTCCTGATCTCCATGTGTTGATTTCGACCCCTTTTCATCCTGCCTATGTCACGGCTGAAAGGATCAAGAAGGCAAAAAATCTACAACTTCTGCTGACAGCTGGAATTGGATCAGATCATGTTGATCTGAAAGCTGCTGCTGCTGCTGGATTGACAGTAGCAGAGGTCACTGGAAGCAATACTGTCTCAGTTGCGGAAGATGAACTGATGCGAATCTTAATTCTTGTCCGAAATTTCTTACCTGGACATCATCAGGTTATCAATGGGGAGTGGAATGTTGCTGCAATTGCGCACAGAGCTTATGATTTGGAAGGCAAGACTGTTGGAACTGTTGGTGCAGGACGTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0236E02-u8qcS/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E418914" ref_strand="+" ref_description="SGN-E418914 [STM-28-J3]">
      <seq>gtcgcttctaagtactgggccttcgccctttcctataaaaaggcgatacgtctctccagtgagtcatctcagccaactggagtgtattcttctctctgtttttagcaaagtacaaaaccctttgctgtaaatccaaaaaattccgatggcgatgagtcgtgtagcttctacagcagctcgtgctattacttcaccttcatccttagtttttaccagagaacttcaggcttcccctggccccaaaaagattgtgggtgttttctacaaagcaaatgaatatgctgaaatgaaccccaactttttgggctgtgcagaaaatgccttggggatacgtgaatggttagaatctaaaggtcatcagtacatagtcactcctgacaaagaaggaccagattgtgagcttgagaaacacattcctgatctccatgtgttgatttcgaccccttttcatcctgcctatgtcacggctgaaaggatcaagaaggcaaaaaatctacaactactgctgacagctggaattggatcagatcatgttgatctgaaagctgctgctgctgctggattgacagtggcagaagtcactggaagcaatactgtctcagttgcggaagatgaactgatgcgaatcttaattcttgtccgaaatttcttgcctggacatcatcaggttatcaatggggagtggaatgttgctgcaattg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0236E02-u8qcS/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0236E02.1" temp_strand="+" temp_description="C02HBa0236E02.1  AC215430.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0236E02 sequenced_by:kribb upload_account_name:korea">
        <position start="65163" stop="68367"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="65463" g_stop="65689" g_length="227"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="226" r_length="226" r_score="0.943"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="65690" i_stop="66849" i_length="1160">
            <donor d_prob="1.000" d_score="0.98"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="66850" g_stop="67021" g_length="172"/>
          <reference_exon_boundary r_type="cDNA" r_start="227" r_stop="398" r_length="172" r_score="0.994"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="67022" i_stop="67764" i_length="743">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="0.987" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="67765" g_stop="68067" g_length="303"/>
          <reference_exon_boundary r_type="cDNA" r_start="399" r_stop="701" r_length="303" r_score="0.987"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0236E02.1" gen_strand="+" ref_id="SGN-E418914" ref_strand="+">
        <total_alignment_score>0.974</total_alignment_score>
        <cumulative_length_of_scored_exons>702</cumulative_length_of_scored_exons>
        <coverage percentage="1.001" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0236E02.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E418914" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="65463" e_stop="65689"/>
          <exon e_start="66850" e_stop="67021"/>
          <exon e_start="67765" e_stop="68067"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTCGCTTCTAAGTACTGGGCCTTCGCCCTTTCCTATAAAAAGCCGTTACGTCTCTCCAGTAAGTCATCTCAGCCAACTGGAGTTTATTCTTCTCTCTGTTTTTAG-TAAGTACGAAACCCTTTTCTGTAAATCCAAAAAAAATTCCGATGGCGATGAGGCGTGTAGCTTCTACAGCAGCTCGTGCTATTGCTTCACCTTCATCCTTAGTTTTTACCAGAGAACTTCAGGTAACTAGCCATTTCTCCTCAATAGCCACTTTTTGTTGCTTTTGTTTTATATGACCTAGTTTTCGCCCTTTGATGAATTATCGGAAACCGGCACGGATCAACTCCGATTTTTCGAGAATCAAGTGAGTTGGAGATTGGAACAGAGGAAACTAAAGGAATTTAACCGTGTAAAGGAAAAAATTAAACACACTGTATTTGGTGCTCTACCCCTCGTCTCTTCTTTTTGGCTTTCCCCGTACTCTACACACCAAATGAAATGGCTCGGATATGAAAGGACTAATAACTTTTCAGTTTTCATTACTGCGTCCTTTTTTAAGCTTTCAGTTTTAATTTGCGTGAATATACCTAATTTTTATTAGGGTAGAGTTATATGTTTCAAATTAAATTGCTACCAAGTTAAATTTAAGAATGTTACATAAATTTAGAGACGGCAAGTTTATATACCAAGAAGGGTACTCCTTCATCCACAGAGAAACGGTGTCCAGTTCGAGTATGGGCGTGAATCTAGATATAGTTAATTCCAATGCAGATATCAGACATCGAGTGAGGAAAAAAAAGATTTTATTAATTTGTTATTTTTAGGTTGCTTTTCCTTTAACTGAAAATCTAACCCGGCAGGACCACAACAGTTCTTTTCCGATCATTACTAATGATACTTGATTTTCACGTGCGATTTCTGATATTTTTATACGGAGTAGGTGAAGAGTGAAATGTTTCACGGGTCTCAAGGACAATGGCAGCAGTGCTTCATTTTTTTTTGCATCTTCACGTGCTATATTATTACTTTGTTTATACTAGTTCGACTTGGAAAATCTTTTCATATTCAGTTGTCTGGGGAATAAATAAGATATTTCTTATTTTTTGATTAAAAAAAGAAGAAGATATTTCTTATTTAAAGAAGTGACAAATTGTACTAACTCATTTACCATGCCTAATATATTATATGTGACAATGATGATTTTTTTTAACTATTAATTGTTAGTTTGGACAAAAATGATCAAAGCAAGTATATTGAATAATGCTTATTTCTTGCCAACTGGTGCATCTACGAGATTATAGGAGTTGGATTATAATTTTAGCACATCCAGCATGCTTATATGACCTTAAAATATTCATGTATATTCTGTCCACTCACCTTTTATTTCTTCATTATTTTACAGGCTTCCCCTGGCCCCAAAAAGATTGTGGGTGTTTTCTACAAAGCAAATGAATATGCTGAAATGAACCCCAACTTTTTGGGCTGTGCAGAAAATGCCTTGGGGATACGTGAATGGTTAGAGTCTAAAGGTCATCAGTACATAGTCACTCCTGACAAAGAAGGACCAGATTGTGGTTAGTTCCTGCTAATCTATAATCTCTCATGTTCTATCCATTATCCCACTGAAGCCTATGCATTTCTAAAGATAATTTCTTTACCCTTCATGCTTGTACAACTAAACACATCTTAAAAGGAGTATTTTTGCATTTAAAACATGCATATATGTGCTGAAGTTTTTTAAAAATATATGGCTCACGTGAGGAGAATATAACGGTCATAGCAGGAACATTTATTTAGATAAAGAGCAAAGCAAAGTAAACAATATTTGCTTTGTTAGTGTTGGTCCTTTGCTGCTAGTGAATTATGATCAGGACATTGTGAGGTAGTTTCTTGCAGGAGGGAAAAAAAGAGTGTATTTTACCTTGATATACAGGTGTGCATTTGCAAAACGTCTATACTTCAGGACTCAGGTGTAAGTTGTACTAGTTTGATAAGACTATGGCTAAATTTTGTAATTTAAACAAGGATTTATCAAAGTCGCAGGGGCTTGTTTAGTTGTTGAGTAGAGTGCACACATGGATGCTTTAGTGATTTTCTGATGGATGACATGCTTAGTGTAAATCCTTGCTTATTAGTATCTTTTATCATGAGAAAGAATGGTGCCCTAGTCTGACACACAAACTACTCTGTGTCTTAGTTTTTCACTGTTGAATCCTTTACTATGCTCTATGCAAAGAAATTTCTCCTGAGCTAAAGTTTTTGAGTGTGTCCATCTATAATAGCTTCTTTTTTTTTTCCCATGACTTTCTCTCTGCAGAGCTTGAGAAACACATTCCTGATCTCCATGTGTTGATTTCGACCCCTTTTCATCCTGCCTATGTCACGGCTGAAAGGATCAAGAAGGCAAAAAATCTACAACTTCTGCTGACAGCTGGAATTGGATCAGATCATGTTGATCTGAAAGCTGCTGCTGCTGCTGGATTGACAGTAGCAGAGGTCACTGGAAGCAATACTGTCTCAGTTGCGGAAGATGAACTGATGCGAATCTTAATTCTTGTCCGAAATTTCTTACCTGGACATCATCAGGTTATCAATGGGGAGTGGAATGTTGCTGCAATTG</genome_strand>
        <mrna_strand>GTCGCTTCTAAGTACTGGGCCTTCGCCCTTTCCTATAAAAAGGCGATACGTCTCTCCAGTGAGTCATCTCAGCCAACTGGAGTGTATTCTTCTCTCTGTTTTTAGCAAAGTACAAAACCCTTTGCTGTAAATCC--AAAAAATTCCGATGGCGATGAGTCGTGTAGCTTCTACAGCAGCTCGTGCTATTACTTCACCTTCATCCTTAGTTTTTACCAGAGAACTTCAG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCTTCCCCTGGCCCCAAAAAGATTGTGGGTGTTTTCTACAAAGCAAATGAATATGCTGAAATGAACCCCAACTTTTTGGGCTGTGCAGAAAATGCCTTGGGGATACGTGAATGGTTAGAATCTAAAGGTCATCAGTACATAGTCACTCCTGACAAAGAAGGACCAGATTGTG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGCTTGAGAAACACATTCCTGATCTCCATGTGTTGATTTCGACCCCTTTTCATCCTGCCTATGTCACGGCTGAAAGGATCAAGAAGGCAAAAAATCTACAACTACTGCTGACAGCTGGAATTGGATCAGATCATGTTGATCTGAAAGCTGCTGCTGCTGCTGGATTGACAGTGGCAGAAGTCACTGGAAGCAATACTGTCTCAGTTGCGGAAGATGAACTGATGCGAATCTTAATTCTTGTCCGAAATTTCTTGCCTGGACATCATCAGGTTATCAATGGGGAGTGGAATGTTGCTGCAATTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0236E02-u8qcS/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E443104" ref_strand="+" ref_description="SGN-E443104 [cSTA-36-E2]">
      <seq>gtcgcttctaagtactgggccttcgccctttcctataaaaaggcgatacgtctctccagtgagtcatctcagccaactggagtgtattcttctctctgtttttagcaaagtacaaaaccctttgctgtaaatccaaaaaattccgatggcgatgagtcgtgtagcttctacagcagctcgtgctattacttcaccttcatccttagtttttaccagagaacttcaggcttcccctggccccaaaaagattgtgggtgttttctacaaagcaaatgaatatgctgaaatgaaccccaactttttgggctgtgcagaaaatgccttggggatacgtgaatggttagaatctaaaggtcatcagtacatagtcactcctgac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0236E02-u8qcS/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0236E02.1" temp_strand="+" temp_description="C02HBa0236E02.1  AC215430.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0236E02 sequenced_by:kribb upload_account_name:korea">
        <position start="65163" stop="67302"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="65463" g_stop="65689" g_length="227"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="226" r_length="226" r_score="0.943"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="65690" i_stop="66849" i_length="1160">
            <donor d_prob="1.000" d_score="0.98"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="66850" g_stop="67002" g_length="153"/>
          <reference_exon_boundary r_type="cDNA" r_start="227" r_stop="379" r_length="153" r_score="0.993"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0236E02.1" gen_strand="+" ref_id="SGN-E443104" ref_strand="+">
        <total_alignment_score>0.963</total_alignment_score>
        <cumulative_length_of_scored_exons>380</cumulative_length_of_scored_exons>
        <coverage percentage="1.003" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0236E02.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E443104" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="65463" e_stop="65689"/>
          <exon e_start="66850" e_stop="67002"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTCGCTTCTAAGTACTGGGCCTTCGCCCTTTCCTATAAAAAGCCGTTACGTCTCTCCAGTAAGTCATCTCAGCCAACTGGAGTTTATTCTTCTCTCTGTTTTTAG-TAAGTACGAAACCCTTTTCTGTAAATCCAAAAAAAATTCCGATGGCGATGAGGCGTGTAGCTTCTACAGCAGCTCGTGCTATTGCTTCACCTTCATCCTTAGTTTTTACCAGAGAACTTCAGGTAACTAGCCATTTCTCCTCAATAGCCACTTTTTGTTGCTTTTGTTTTATATGACCTAGTTTTCGCCCTTTGATGAATTATCGGAAACCGGCACGGATCAACTCCGATTTTTCGAGAATCAAGTGAGTTGGAGATTGGAACAGAGGAAACTAAAGGAATTTAACCGTGTAAAGGAAAAAATTAAACACACTGTATTTGGTGCTCTACCCCTCGTCTCTTCTTTTTGGCTTTCCCCGTACTCTACACACCAAATGAAATGGCTCGGATATGAAAGGACTAATAACTTTTCAGTTTTCATTACTGCGTCCTTTTTTAAGCTTTCAGTTTTAATTTGCGTGAATATACCTAATTTTTATTAGGGTAGAGTTATATGTTTCAAATTAAATTGCTACCAAGTTAAATTTAAGAATGTTACATAAATTTAGAGACGGCAAGTTTATATACCAAGAAGGGTACTCCTTCATCCACAGAGAAACGGTGTCCAGTTCGAGTATGGGCGTGAATCTAGATATAGTTAATTCCAATGCAGATATCAGACATCGAGTGAGGAAAAAAAAGATTTTATTAATTTGTTATTTTTAGGTTGCTTTTCCTTTAACTGAAAATCTAACCCGGCAGGACCACAACAGTTCTTTTCCGATCATTACTAATGATACTTGATTTTCACGTGCGATTTCTGATATTTTTATACGGAGTAGGTGAAGAGTGAAATGTTTCACGGGTCTCAAGGACAATGGCAGCAGTGCTTCATTTTTTTTTGCATCTTCACGTGCTATATTATTACTTTGTTTATACTAGTTCGACTTGGAAAATCTTTTCATATTCAGTTGTCTGGGGAATAAATAAGATATTTCTTATTTTTTGATTAAAAAAAGAAGAAGATATTTCTTATTTAAAGAAGTGACAAATTGTACTAACTCATTTACCATGCCTAATATATTATATGTGACAATGATGATTTTTTTTAACTATTAATTGTTAGTTTGGACAAAAATGATCAAAGCAAGTATATTGAATAATGCTTATTTCTTGCCAACTGGTGCATCTACGAGATTATAGGAGTTGGATTATAATTTTAGCACATCCAGCATGCTTATATGACCTTAAAATATTCATGTATATTCTGTCCACTCACCTTTTATTTCTTCATTATTTTACAGGCTTCCCCTGGCCCCAAAAAGATTGTGGGTGTTTTCTACAAAGCAAATGAATATGCTGAAATGAACCCCAACTTTTTGGGCTGTGCAGAAAATGCCTTGGGGATACGTGAATGGTTAGAGTCTAAAGGTCATCAGTACATAGTCACTCCTGAC</genome_strand>
        <mrna_strand>GTCGCTTCTAAGTACTGGGCCTTCGCCCTTTCCTATAAAAAGGCGATACGTCTCTCCAGTGAGTCATCTCAGCCAACTGGAGTGTATTCTTCTCTCTGTTTTTAGCAAAGTACAAAACCCTTTGCTGTAAATCC--AAAAAATTCCGATGGCGATGAGTCGTGTAGCTTCTACAGCAGCTCGTGCTATTACTTCACCTTCATCCTTAGTTTTTACCAGAGAACTTCAG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCTTCCCCTGGCCCCAAAAAGATTGTGGGTGTTTTCTACAAAGCAAATGAATATGCTGAAATGAACCCCAACTTTTTGGGCTGTGCAGAAAATGCCTTGGGGATACGTGAATGGTTAGAATCTAAAGGTCATCAGTACATAGTCACTCCTGAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0236E02-u8qcS/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E202248" ref_strand="+" ref_description="SGN-E202248 [cLEC-6-E21]">
      <seq>cgcttctaagtactgggccttcgccctttcctataaaaagccgttacgtctctccagtaagtcatctcagccaactggagtttattcttctctctgtttttagtaagtacgaaacccttttctgtaaatccaaaaaaaattccgatggcgatgaggcgtgtagcttctacagcagctcgtgctattgcttcaccttcatccttagtttttaccagagaacttcaggcttcccctggccccaaaaagattgtgggtgttttctacacagcaaatgaatatgctgaaatgaaccccaactttttgggctgtgcagaaaatgccttggggatacgtgaatggttagagtctaaaggtcatcagtacatagtcactcctgacaaagaaggaccagattgtgagcttgagaaacacattcctgatctccatgtgttgatttcgaccccttttcatcctgcctatgtcacggctgaaaggatcaagaaggcaaaaaatctacaacttctgctgacagctggaattggatcagatcatgttgatctgaaagctgctgctgctgc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0236E02-u8qcS/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0236E02.1" temp_strand="+" temp_description="C02HBa0236E02.1  AC215430.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0236E02 sequenced_by:kribb upload_account_name:korea">
        <position start="65165" stop="68224"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="65465" g_stop="65689" g_length="225"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="225" r_length="225" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="65690" i_stop="66849" i_length="1160">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="66850" g_stop="67021" g_length="172"/>
          <reference_exon_boundary r_type="cDNA" r_start="226" r_stop="397" r_length="172" r_score="0.994"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="67022" i_stop="67764" i_length="743">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="0.987" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="67765" g_stop="67924" g_length="160"/>
          <reference_exon_boundary r_type="cDNA" r_start="398" r_stop="557" r_length="160" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0236E02.1" gen_strand="+" ref_id="SGN-E202248" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>557</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0236E02.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E202248" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="65465" e_stop="65689"/>
          <exon e_start="66850" e_stop="67021"/>
          <exon e_start="67765" e_stop="67924"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CGCTTCTAAGTACTGGGCCTTCGCCCTTTCCTATAAAAAGCCGTTACGTCTCTCCAGTAAGTCATCTCAGCCAACTGGAGTTTATTCTTCTCTCTGTTTTTAGTAAGTACGAAACCCTTTTCTGTAAATCCAAAAAAAATTCCGATGGCGATGAGGCGTGTAGCTTCTACAGCAGCTCGTGCTATTGCTTCACCTTCATCCTTAGTTTTTACCAGAGAACTTCAGGTAACTAGCCATTTCTCCTCAATAGCCACTTTTTGTTGCTTTTGTTTTATATGACCTAGTTTTCGCCCTTTGATGAATTATCGGAAACCGGCACGGATCAACTCCGATTTTTCGAGAATCAAGTGAGTTGGAGATTGGAACAGAGGAAACTAAAGGAATTTAACCGTGTAAAGGAAAAAATTAAACACACTGTATTTGGTGCTCTACCCCTCGTCTCTTCTTTTTGGCTTTCCCCGTACTCTACACACCAAATGAAATGGCTCGGATATGAAAGGACTAATAACTTTTCAGTTTTCATTACTGCGTCCTTTTTTAAGCTTTCAGTTTTAATTTGCGTGAATATACCTAATTTTTATTAGGGTAGAGTTATATGTTTCAAATTAAATTGCTACCAAGTTAAATTTAAGAATGTTACATAAATTTAGAGACGGCAAGTTTATATACCAAGAAGGGTACTCCTTCATCCACAGAGAAACGGTGTCCAGTTCGAGTATGGGCGTGAATCTAGATATAGTTAATTCCAATGCAGATATCAGACATCGAGTGAGGAAAAAAAAGATTTTATTAATTTGTTATTTTTAGGTTGCTTTTCCTTTAACTGAAAATCTAACCCGGCAGGACCACAACAGTTCTTTTCCGATCATTACTAATGATACTTGATTTTCACGTGCGATTTCTGATATTTTTATACGGAGTAGGTGAAGAGTGAAATGTTTCACGGGTCTCAAGGACAATGGCAGCAGTGCTTCATTTTTTTTTGCATCTTCACGTGCTATATTATTACTTTGTTTATACTAGTTCGACTTGGAAAATCTTTTCATATTCAGTTGTCTGGGGAATAAATAAGATATTTCTTATTTTTTGATTAAAAAAAGAAGAAGATATTTCTTATTTAAAGAAGTGACAAATTGTACTAACTCATTTACCATGCCTAATATATTATATGTGACAATGATGATTTTTTTTAACTATTAATTGTTAGTTTGGACAAAAATGATCAAAGCAAGTATATTGAATAATGCTTATTTCTTGCCAACTGGTGCATCTACGAGATTATAGGAGTTGGATTATAATTTTAGCACATCCAGCATGCTTATATGACCTTAAAATATTCATGTATATTCTGTCCACTCACCTTTTATTTCTTCATTATTTTACAGGCTTCCCCTGGCCCCAAAAAGATTGTGGGTGTTTTCTACAAAGCAAATGAATATGCTGAAATGAACCCCAACTTTTTGGGCTGTGCAGAAAATGCCTTGGGGATACGTGAATGGTTAGAGTCTAAAGGTCATCAGTACATAGTCACTCCTGACAAAGAAGGACCAGATTGTGGTTAGTTCCTGCTAATCTATAATCTCTCATGTTCTATCCATTATCCCACTGAAGCCTATGCATTTCTAAAGATAATTTCTTTACCCTTCATGCTTGTACAACTAAACACATCTTAAAAGGAGTATTTTTGCATTTAAAACATGCATATATGTGCTGAAGTTTTTTAAAAATATATGGCTCACGTGAGGAGAATATAACGGTCATAGCAGGAACATTTATTTAGATAAAGAGCAAAGCAAAGTAAACAATATTTGCTTTGTTAGTGTTGGTCCTTTGCTGCTAGTGAATTATGATCAGGACATTGTGAGGTAGTTTCTTGCAGGAGGGAAAAAAAGAGTGTATTTTACCTTGATATACAGGTGTGCATTTGCAAAACGTCTATACTTCAGGACTCAGGTGTAAGTTGTACTAGTTTGATAAGACTATGGCTAAATTTTGTAATTTAAACAAGGATTTATCAAAGTCGCAGGGGCTTGTTTAGTTGTTGAGTAGAGTGCACACATGGATGCTTTAGTGATTTTCTGATGGATGACATGCTTAGTGTAAATCCTTGCTTATTAGTATCTTTTATCATGAGAAAGAATGGTGCCCTAGTCTGACACACAAACTACTCTGTGTCTTAGTTTTTCACTGTTGAATCCTTTACTATGCTCTATGCAAAGAAATTTCTCCTGAGCTAAAGTTTTTGAGTGTGTCCATCTATAATAGCTTCTTTTTTTTTTCCCATGACTTTCTCTCTGCAGAGCTTGAGAAACACATTCCTGATCTCCATGTGTTGATTTCGACCCCTTTTCATCCTGCCTATGTCACGGCTGAAAGGATCAAGAAGGCAAAAAATCTACAACTTCTGCTGACAGCTGGAATTGGATCAGATCATGTTGATCTGAAAGCTGCTGCTGCTGC</genome_strand>
        <mrna_strand>CGCTTCTAAGTACTGGGCCTTCGCCCTTTCCTATAAAAAGCCGTTACGTCTCTCCAGTAAGTCATCTCAGCCAACTGGAGTTTATTCTTCTCTCTGTTTTTAGTAAGTACGAAACCCTTTTCTGTAAATCCAAAAAAAATTCCGATGGCGATGAGGCGTGTAGCTTCTACAGCAGCTCGTGCTATTGCTTCACCTTCATCCTTAGTTTTTACCAGAGAACTTCAG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCTTCCCCTGGCCCCAAAAAGATTGTGGGTGTTTTCTACACAGCAAATGAATATGCTGAAATGAACCCCAACTTTTTGGGCTGTGCAGAAAATGCCTTGGGGATACGTGAATGGTTAGAGTCTAAAGGTCATCAGTACATAGTCACTCCTGACAAAGAAGGACCAGATTGTG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGCTTGAGAAACACATTCCTGATCTCCATGTGTTGATTTCGACCCCTTTTCATCCTGCCTATGTCACGGCTGAAAGGATCAAGAAGGCAAAAAATCTACAACTTCTGCTGACAGCTGGAATTGGATCAGATCATGTTGATCTGAAAGCTGCTGCTGCTGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0236E02-u8qcS/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E557549" ref_strand="+" ref_description="SGN-E557549 [16366]">
      <seq>ctgggccttcgccctttactataaagaaagtgatacgtctctccagtgagtcatctcagccaactggagtgtattcttctctctgtttttagcaaagtacaaaaccctttgctgtaaatccaaaaaattccgatggcgatgagtcgtgtagcttctacagcagctcgtgctattacttcaccttcatccttagtttttaccagagaacttcaggcttcccctggccccaaaaagattgtgggtgttttctacaaagcaaatgaatatgctgaaatgaaccccaactttttgggctgtgcagaaaatgccttggggatacgtgaatggttagaatctaaaggtcatcagtacatagtcactcctgacaaagaaggaccagattgtgagcttgagaaacacattcctgatctccatgtgttgatttcgaccccttttcatcctgcctatgtcacggctgaaaggatcaagaaggcaaaaaatctacaattactgctgacagctggaattggatcagatcatgttgatctgaaagctgctgctgctgctggattgacagtggcagaagtcactggaagcaatactgtctcagttgcggaagatgaactgatgcgaat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0236E02-u8qcS/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0236E02.1" temp_strand="+" temp_description="C02HBa0236E02.1  AC215430.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0236E02 sequenced_by:kribb upload_account_name:korea">
        <position start="65177" stop="68293"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="65477" g_stop="65689" g_length="213"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="213" r_length="213" r_score="0.915"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="65690" i_stop="66849" i_length="1160">
            <donor d_prob="1.000" d_score="0.98"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="66850" g_stop="67021" g_length="172"/>
          <reference_exon_boundary r_type="cDNA" r_start="214" r_stop="385" r_length="172" r_score="0.994"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="67022" i_stop="67764" i_length="743">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="0.987" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="67765" g_stop="67993" g_length="229"/>
          <reference_exon_boundary r_type="cDNA" r_start="386" r_stop="614" r_length="229" r_score="0.983"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0236E02.1" gen_strand="+" ref_id="SGN-E557549" ref_strand="+">
        <total_alignment_score>0.963</total_alignment_score>
        <cumulative_length_of_scored_exons>614</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0236E02.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E557549" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="65477" e_stop="65689"/>
          <exon e_start="66850" e_stop="67021"/>
          <exon e_start="67765" e_stop="67993"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTGGGCCTTCGCCCTTTCCTATAAA-AAGCCGTTACGTCTCTCCAGTAAGTCATCTCAGCCAACTGGAGTTTATTCTTCTCTCTGTTTTTAGTAA-GTACGAAACCCTTTTCTGTAAATCCAAAAAAAATTCCGATGGCGATGAGGCGTGTAGCTTCTACAGCAGCTCGTGCTATTGCTTCACCTTCATCCTTAGTTTTTACCAGAGAACTTCAGGTAACTAGCCATTTCTCCTCAATAGCCACTTTTTGTTGCTTTTGTTTTATATGACCTAGTTTTCGCCCTTTGATGAATTATCGGAAACCGGCACGGATCAACTCCGATTTTTCGAGAATCAAGTGAGTTGGAGATTGGAACAGAGGAAACTAAAGGAATTTAACCGTGTAAAGGAAAAAATTAAACACACTGTATTTGGTGCTCTACCCCTCGTCTCTTCTTTTTGGCTTTCCCCGTACTCTACACACCAAATGAAATGGCTCGGATATGAAAGGACTAATAACTTTTCAGTTTTCATTACTGCGTCCTTTTTTAAGCTTTCAGTTTTAATTTGCGTGAATATACCTAATTTTTATTAGGGTAGAGTTATATGTTTCAAATTAAATTGCTACCAAGTTAAATTTAAGAATGTTACATAAATTTAGAGACGGCAAGTTTATATACCAAGAAGGGTACTCCTTCATCCACAGAGAAACGGTGTCCAGTTCGAGTATGGGCGTGAATCTAGATATAGTTAATTCCAATGCAGATATCAGACATCGAGTGAGGAAAAAAAAGATTTTATTAATTTGTTATTTTTAGGTTGCTTTTCCTTTAACTGAAAATCTAACCCGGCAGGACCACAACAGTTCTTTTCCGATCATTACTAATGATACTTGATTTTCACGTGCGATTTCTGATATTTTTATACGGAGTAGGTGAAGAGTGAAATGTTTCACGGGTCTCAAGGACAATGGCAGCAGTGCTTCATTTTTTTTTGCATCTTCACGTGCTATATTATTACTTTGTTTATACTAGTTCGACTTGGAAAATCTTTTCATATTCAGTTGTCTGGGGAATAAATAAGATATTTCTTATTTTTTGATTAAAAAAAGAAGAAGATATTTCTTATTTAAAGAAGTGACAAATTGTACTAACTCATTTACCATGCCTAATATATTATATGTGACAATGATGATTTTTTTTAACTATTAATTGTTAGTTTGGACAAAAATGATCAAAGCAAGTATATTGAATAATGCTTATTTCTTGCCAACTGGTGCATCTACGAGATTATAGGAGTTGGATTATAATTTTAGCACATCCAGCATGCTTATATGACCTTAAAATATTCATGTATATTCTGTCCACTCACCTTTTATTTCTTCATTATTTTACAGGCTTCCCCTGGCCCCAAAAAGATTGTGGGTGTTTTCTACAAAGCAAATGAATATGCTGAAATGAACCCCAACTTTTTGGGCTGTGCAGAAAATGCCTTGGGGATACGTGAATGGTTAGAGTCTAAAGGTCATCAGTACATAGTCACTCCTGACAAAGAAGGACCAGATTGTGGTTAGTTCCTGCTAATCTATAATCTCTCATGTTCTATCCATTATCCCACTGAAGCCTATGCATTTCTAAAGATAATTTCTTTACCCTTCATGCTTGTACAACTAAACACATCTTAAAAGGAGTATTTTTGCATTTAAAACATGCATATATGTGCTGAAGTTTTTTAAAAATATATGGCTCACGTGAGGAGAATATAACGGTCATAGCAGGAACATTTATTTAGATAAAGAGCAAAGCAAAGTAAACAATATTTGCTTTGTTAGTGTTGGTCCTTTGCTGCTAGTGAATTATGATCAGGACATTGTGAGGTAGTTTCTTGCAGGAGGGAAAAAAAGAGTGTATTTTACCTTGATATACAGGTGTGCATTTGCAAAACGTCTATACTTCAGGACTCAGGTGTAAGTTGTACTAGTTTGATAAGACTATGGCTAAATTTTGTAATTTAAACAAGGATTTATCAAAGTCGCAGGGGCTTGTTTAGTTGTTGAGTAGAGTGCACACATGGATGCTTTAGTGATTTTCTGATGGATGACATGCTTAGTGTAAATCCTTGCTTATTAGTATCTTTTATCATGAGAAAGAATGGTGCCCTAGTCTGACACACAAACTACTCTGTGTCTTAGTTTTTCACTGTTGAATCCTTTACTATGCTCTATGCAAAGAAATTTCTCCTGAGCTAAAGTTTTTGAGTGTGTCCATCTATAATAGCTTCTTTTTTTTTTCCCATGACTTTCTCTCTGCAGAGCTTGAGAAACACATTCCTGATCTCCATGTGTTGATTTCGACCCCTTTTCATCCTGCCTATGTCACGGCTGAAAGGATCAAGAAGGCAAAAAATCTACAACTTCTGCTGACAGCTGGAATTGGATCAGATCATGTTGATCTGAAAGCTGCTGCTGCTGCTGGATTGACAGTAGCAGAGGTCACTGGAAGCAATACTGTCTCAGTTGCGGAAGATGAACTGATGCGAAT</genome_strand>
        <mrna_strand>CTGGGCCTTCGCCCTTTACTATAAAGAAAGTGATACGTCTCTCCAGTGAGTCATCTCAGCCAACTGGAGTGTATTCTTCTCTCTGTTTTTAGCAAAGTACAAAACCCTTTGCTGTAAATCC--AAAAAATTCCGATGGCGATGAGTCGTGTAGCTTCTACAGCAGCTCGTGCTATTACTTCACCTTCATCCTTAGTTTTTACCAGAGAACTTCAG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCTTCCCCTGGCCCCAAAAAGATTGTGGGTGTTTTCTACAAAGCAAATGAATATGCTGAAATGAACCCCAACTTTTTGGGCTGTGCAGAAAATGCCTTGGGGATACGTGAATGGTTAGAATCTAAAGGTCATCAGTACATAGTCACTCCTGACAAAGAAGGACCAGATTGTG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGCTTGAGAAACACATTCCTGATCTCCATGTGTTGATTTCGACCCCTTTTCATCCTGCCTATGTCACGGCTGAAAGGATCAAGAAGGCAAAAAATCTACAATTACTGCTGACAGCTGGAATTGGATCAGATCATGTTGATCTGAAAGCTGCTGCTGCTGCTGGATTGACAGTGGCAGAAGTCACTGGAAGCAATACTGTCTCAGTTGCGGAAGATGAACTGATGCGAAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0236E02-u8qcS/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E329089" ref_strand="+" ref_description="SGN-E329089 [cTOC-24-N9]">
      <seq>ccctttcctataaaaagccgttacgtctctccagtaagtcatctcagccaactggagtttattcttctctctgtttttagtaagtacgaaacccttttctgtaaatccaaaaaaaattccgatggcgatgaggcgtgtagcttctacagcagctcgtgctattgcttcaccttcatccttagtttttaccagagaacttcaggcttcccctggccccaaaaagattgtgggtgttttctacaaagcaaatgaatatgctgaaatgaaccccaactttttgggctgtgcagaaaatgccttggggatacgtgaatggttagagtctaaaggtcatcagtacatagtcactcctgacaaagaaggaccagattgtgagcttgagaaacacattcctgatctccatgtgttgatttcgaccccttttcatcctgcctatgtcacggctgaaaggatcaagaaggcaaaaaatctacaacttctgctgacagctggaattggatcagatcatgttgatctgaaagctgctgctgctgctggattgacagtagcagaggtcactggaagcaatactgtctcagttgcggaagatgaactgatgcgaatcttaattcttgtccgaaatttcttacctggacatcatcaggttatcaatggggagtggaatgttgctgcaattgcgcacagagcttatgatttggaaggcaagactgttggaactgttggtgcaggacgtattggcagacttttactccagcgattgaaagcatttaactgtaatctactttacca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0236E02-u8qcS/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0236E02.1" temp_strand="+" temp_description="C02HBa0236E02.1  AC215430.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0236E02 sequenced_by:kribb upload_account_name:korea">
        <position start="65188" stop="68479"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="65488" g_stop="65689" g_length="202"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="202" r_length="202" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="65690" i_stop="66849" i_length="1160">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="66850" g_stop="67021" g_length="172"/>
          <reference_exon_boundary r_type="cDNA" r_start="203" r_stop="374" r_length="172" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="67022" i_stop="67764" i_length="743">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="0.987" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="67765" g_stop="68179" g_length="415"/>
          <reference_exon_boundary r_type="cDNA" r_start="375" r_stop="789" r_length="415" r_score="0.995"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0236E02.1" gen_strand="+" ref_id="SGN-E329089" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>789</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0236E02.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E329089" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="65488" e_stop="65689"/>
          <exon e_start="66850" e_stop="67021"/>
          <exon e_start="67765" e_stop="68179"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCCTTTCCTATAAAAAGCCGTTACGTCTCTCCAGTAAGTCATCTCAGCCAACTGGAGTTTATTCTTCTCTCTGTTTTTAGTAAGTACGAAACCCTTTTCTGTAAATCCAAAAAAAATTCCGATGGCGATGAGGCGTGTAGCTTCTACAGCAGCTCGTGCTATTGCTTCACCTTCATCCTTAGTTTTTACCAGAGAACTTCAGGTAACTAGCCATTTCTCCTCAATAGCCACTTTTTGTTGCTTTTGTTTTATATGACCTAGTTTTCGCCCTTTGATGAATTATCGGAAACCGGCACGGATCAACTCCGATTTTTCGAGAATCAAGTGAGTTGGAGATTGGAACAGAGGAAACTAAAGGAATTTAACCGTGTAAAGGAAAAAATTAAACACACTGTATTTGGTGCTCTACCCCTCGTCTCTTCTTTTTGGCTTTCCCCGTACTCTACACACCAAATGAAATGGCTCGGATATGAAAGGACTAATAACTTTTCAGTTTTCATTACTGCGTCCTTTTTTAAGCTTTCAGTTTTAATTTGCGTGAATATACCTAATTTTTATTAGGGTAGAGTTATATGTTTCAAATTAAATTGCTACCAAGTTAAATTTAAGAATGTTACATAAATTTAGAGACGGCAAGTTTATATACCAAGAAGGGTACTCCTTCATCCACAGAGAAACGGTGTCCAGTTCGAGTATGGGCGTGAATCTAGATATAGTTAATTCCAATGCAGATATCAGACATCGAGTGAGGAAAAAAAAGATTTTATTAATTTGTTATTTTTAGGTTGCTTTTCCTTTAACTGAAAATCTAACCCGGCAGGACCACAACAGTTCTTTTCCGATCATTACTAATGATACTTGATTTTCACGTGCGATTTCTGATATTTTTATACGGAGTAGGTGAAGAGTGAAATGTTTCACGGGTCTCAAGGACAATGGCAGCAGTGCTTCATTTTTTTTTGCATCTTCACGTGCTATATTATTACTTTGTTTATACTAGTTCGACTTGGAAAATCTTTTCATATTCAGTTGTCTGGGGAATAAATAAGATATTTCTTATTTTTTGATTAAAAAAAGAAGAAGATATTTCTTATTTAAAGAAGTGACAAATTGTACTAACTCATTTACCATGCCTAATATATTATATGTGACAATGATGATTTTTTTTAACTATTAATTGTTAGTTTGGACAAAAATGATCAAAGCAAGTATATTGAATAATGCTTATTTCTTGCCAACTGGTGCATCTACGAGATTATAGGAGTTGGATTATAATTTTAGCACATCCAGCATGCTTATATGACCTTAAAATATTCATGTATATTCTGTCCACTCACCTTTTATTTCTTCATTATTTTACAGGCTTCCCCTGGCCCCAAAAAGATTGTGGGTGTTTTCTACAAAGCAAATGAATATGCTGAAATGAACCCCAACTTTTTGGGCTGTGCAGAAAATGCCTTGGGGATACGTGAATGGTTAGAGTCTAAAGGTCATCAGTACATAGTCACTCCTGACAAAGAAGGACCAGATTGTGGTTAGTTCCTGCTAATCTATAATCTCTCATGTTCTATCCATTATCCCACTGAAGCCTATGCATTTCTAAAGATAATTTCTTTACCCTTCATGCTTGTACAACTAAACACATCTTAAAAGGAGTATTTTTGCATTTAAAACATGCATATATGTGCTGAAGTTTTTTAAAAATATATGGCTCACGTGAGGAGAATATAACGGTCATAGCAGGAACATTTATTTAGATAAAGAGCAAAGCAAAGTAAACAATATTTGCTTTGTTAGTGTTGGTCCTTTGCTGCTAGTGAATTATGATCAGGACATTGTGAGGTAGTTTCTTGCAGGAGGGAAAAAAAGAGTGTATTTTACCTTGATATACAGGTGTGCATTTGCAAAACGTCTATACTTCAGGACTCAGGTGTAAGTTGTACTAGTTTGATAAGACTATGGCTAAATTTTGTAATTTAAACAAGGATTTATCAAAGTCGCAGGGGCTTGTTTAGTTGTTGAGTAGAGTGCACACATGGATGCTTTAGTGATTTTCTGATGGATGACATGCTTAGTGTAAATCCTTGCTTATTAGTATCTTTTATCATGAGAAAGAATGGTGCCCTAGTCTGACACACAAACTACTCTGTGTCTTAGTTTTTCACTGTTGAATCCTTTACTATGCTCTATGCAAAGAAATTTCTCCTGAGCTAAAGTTTTTGAGTGTGTCCATCTATAATAGCTTCTTTTTTTTTTCCCATGACTTTCTCTCTGCAGAGCTTGAGAAACACATTCCTGATCTCCATGTGTTGATTTCGACCCCTTTTCATCCTGCCTATGTCACGGCTGAAAGGATCAAGAAGGCAAAAAATCTACAACTTCTGCTGACAGCTGGAATTGGATCAGATCATGTTGATCTGAAAGCTGCTGCTGCTGCTGGATTGACAGTAGCAGAGGTCACTGGAAGCAATACTGTCTCAGTTGCGGAAGATGAACTGATGCGAATCTTAATTCTTGTCCGAAATTTCTTACCTGGACATCATCAGGTTATCAATGGGGAGTGGAATGTTGCTGCAATTGCGCACAGAGCTTATGATTTGGAAGGCAAGACTGTTGGAACTGTTGGTGCAGGACGTATTGGCAGACTTTTACTCCAGCGATTGAAGCCATTTAACTGTAATCTACTTTACCA</genome_strand>
        <mrna_strand>CCCTTTCCTATAAAAAGCCGTTACGTCTCTCCAGTAAGTCATCTCAGCCAACTGGAGTTTATTCTTCTCTCTGTTTTTAGTAAGTACGAAACCCTTTTCTGTAAATCCAAAAAAAATTCCGATGGCGATGAGGCGTGTAGCTTCTACAGCAGCTCGTGCTATTGCTTCACCTTCATCCTTAGTTTTTACCAGAGAACTTCAG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCTTCCCCTGGCCCCAAAAAGATTGTGGGTGTTTTCTACAAAGCAAATGAATATGCTGAAATGAACCCCAACTTTTTGGGCTGTGCAGAAAATGCCTTGGGGATACGTGAATGGTTAGAGTCTAAAGGTCATCAGTACATAGTCACTCCTGACAAAGAAGGACCAGATTGTG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGCTTGAGAAACACATTCCTGATCTCCATGTGTTGATTTCGACCCCTTTTCATCCTGCCTATGTCACGGCTGAAAGGATCAAGAAGGCAAAAAATCTACAACTTCTGCTGACAGCTGGAATTGGATCAGATCATGTTGATCTGAAAGCTGCTGCTGCTGCTGGATTGACAGTAGCAGAGGTCACTGGAAGCAATACTGTCTCAGTTGCGGAAGATGAACTGATGCGAATCTTAATTCTTGTCCGAAATTTCTTACCTGGACATCATCAGGTTATCAATGGGGAGTGGAATGTTGCTGCAATTGCGCACAGAGCTTATGATTTGGAAGGCAAGACTGTTGGAACTGTTGGTGCAGGACGTATTGGCAGACTTTTACTCCAGCGATTGAAAGCATTTAACTGTAATCTACTTTACCA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0236E02-u8qcS/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E325708" ref_strand="+" ref_description="SGN-E325708 [cTOC-15-D3]">
      <seq>ccctttcctataaaaagccgttacgtctctccagtaagtcatctcagccaactggagtttattcttctctctgtttttagtaagtacgaaacccttttctgtaaatccaaaaaaaattccgatggcgatgaggcgtgtagcttctacagcagctcgtgctattgcttcaccttcatccttagtttttaccagagaacttcaggcttcccctggccccaaaaagattgtgggtgttttctacaaagcaaatgaatatgctgaaatgaaccccaactttttgggctgtgcagaaaatgccttggggatacgtgaatggttagagtctaaaggtcatcagtacatagtcactcctgacaaagaaggaccagattgtgagcttgagaaacacattcctgatctccatgtgttgatttcgaccccttttcatcctgcctatgtcacggctganaggatcaagaaggcaaaaaatctacaacttctgctgacagctggaattggatcagatcatgttgatctgaaagctgctgctgctgctggattgacagtagcagaggtcactggaagcatactgtctcagttgcngaagatgaactgatgcgaatcttaattcttgtccgaaattcttacct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0236E02-u8qcS/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0236E02.1" temp_strand="+" temp_description="C02HBa0236E02.1  AC215430.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0236E02 sequenced_by:kribb upload_account_name:korea">
        <position start="65188" stop="68321"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="65488" g_stop="65689" g_length="202"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="202" r_length="202" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="65690" i_stop="66849" i_length="1160">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="66850" g_stop="67021" g_length="172"/>
          <reference_exon_boundary r_type="cDNA" r_start="203" r_stop="374" r_length="172" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="67022" i_stop="67764" i_length="743">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="0.987" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="67765" g_stop="68021" g_length="257"/>
          <reference_exon_boundary r_type="cDNA" r_start="375" r_stop="629" r_length="255" r_score="0.984"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0236E02.1" gen_strand="+" ref_id="SGN-E325708" ref_strand="+">
        <total_alignment_score>0.994</total_alignment_score>
        <cumulative_length_of_scored_exons>631</cumulative_length_of_scored_exons>
        <coverage percentage="1.003" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0236E02.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E325708" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="65488" e_stop="65689"/>
          <exon e_start="66850" e_stop="67021"/>
          <exon e_start="67765" e_stop="68021"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCCTTTCCTATAAAAAGCCGTTACGTCTCTCCAGTAAGTCATCTCAGCCAACTGGAGTTTATTCTTCTCTCTGTTTTTAGTAAGTACGAAACCCTTTTCTGTAAATCCAAAAAAAATTCCGATGGCGATGAGGCGTGTAGCTTCTACAGCAGCTCGTGCTATTGCTTCACCTTCATCCTTAGTTTTTACCAGAGAACTTCAGGTAACTAGCCATTTCTCCTCAATAGCCACTTTTTGTTGCTTTTGTTTTATATGACCTAGTTTTCGCCCTTTGATGAATTATCGGAAACCGGCACGGATCAACTCCGATTTTTCGAGAATCAAGTGAGTTGGAGATTGGAACAGAGGAAACTAAAGGAATTTAACCGTGTAAAGGAAAAAATTAAACACACTGTATTTGGTGCTCTACCCCTCGTCTCTTCTTTTTGGCTTTCCCCGTACTCTACACACCAAATGAAATGGCTCGGATATGAAAGGACTAATAACTTTTCAGTTTTCATTACTGCGTCCTTTTTTAAGCTTTCAGTTTTAATTTGCGTGAATATACCTAATTTTTATTAGGGTAGAGTTATATGTTTCAAATTAAATTGCTACCAAGTTAAATTTAAGAATGTTACATAAATTTAGAGACGGCAAGTTTATATACCAAGAAGGGTACTCCTTCATCCACAGAGAAACGGTGTCCAGTTCGAGTATGGGCGTGAATCTAGATATAGTTAATTCCAATGCAGATATCAGACATCGAGTGAGGAAAAAAAAGATTTTATTAATTTGTTATTTTTAGGTTGCTTTTCCTTTAACTGAAAATCTAACCCGGCAGGACCACAACAGTTCTTTTCCGATCATTACTAATGATACTTGATTTTCACGTGCGATTTCTGATATTTTTATACGGAGTAGGTGAAGAGTGAAATGTTTCACGGGTCTCAAGGACAATGGCAGCAGTGCTTCATTTTTTTTTGCATCTTCACGTGCTATATTATTACTTTGTTTATACTAGTTCGACTTGGAAAATCTTTTCATATTCAGTTGTCTGGGGAATAAATAAGATATTTCTTATTTTTTGATTAAAAAAAGAAGAAGATATTTCTTATTTAAAGAAGTGACAAATTGTACTAACTCATTTACCATGCCTAATATATTATATGTGACAATGATGATTTTTTTTAACTATTAATTGTTAGTTTGGACAAAAATGATCAAAGCAAGTATATTGAATAATGCTTATTTCTTGCCAACTGGTGCATCTACGAGATTATAGGAGTTGGATTATAATTTTAGCACATCCAGCATGCTTATATGACCTTAAAATATTCATGTATATTCTGTCCACTCACCTTTTATTTCTTCATTATTTTACAGGCTTCCCCTGGCCCCAAAAAGATTGTGGGTGTTTTCTACAAAGCAAATGAATATGCTGAAATGAACCCCAACTTTTTGGGCTGTGCAGAAAATGCCTTGGGGATACGTGAATGGTTAGAGTCTAAAGGTCATCAGTACATAGTCACTCCTGACAAAGAAGGACCAGATTGTGGTTAGTTCCTGCTAATCTATAATCTCTCATGTTCTATCCATTATCCCACTGAAGCCTATGCATTTCTAAAGATAATTTCTTTACCCTTCATGCTTGTACAACTAAACACATCTTAAAAGGAGTATTTTTGCATTTAAAACATGCATATATGTGCTGAAGTTTTTTAAAAATATATGGCTCACGTGAGGAGAATATAACGGTCATAGCAGGAACATTTATTTAGATAAAGAGCAAAGCAAAGTAAACAATATTTGCTTTGTTAGTGTTGGTCCTTTGCTGCTAGTGAATTATGATCAGGACATTGTGAGGTAGTTTCTTGCAGGAGGGAAAAAAAGAGTGTATTTTACCTTGATATACAGGTGTGCATTTGCAAAACGTCTATACTTCAGGACTCAGGTGTAAGTTGTACTAGTTTGATAAGACTATGGCTAAATTTTGTAATTTAAACAAGGATTTATCAAAGTCGCAGGGGCTTGTTTAGTTGTTGAGTAGAGTGCACACATGGATGCTTTAGTGATTTTCTGATGGATGACATGCTTAGTGTAAATCCTTGCTTATTAGTATCTTTTATCATGAGAAAGAATGGTGCCCTAGTCTGACACACAAACTACTCTGTGTCTTAGTTTTTCACTGTTGAATCCTTTACTATGCTCTATGCAAAGAAATTTCTCCTGAGCTAAAGTTTTTGAGTGTGTCCATCTATAATAGCTTCTTTTTTTTTTCCCATGACTTTCTCTCTGCAGAGCTTGAGAAACACATTCCTGATCTCCATGTGTTGATTTCGACCCCTTTTCATCCTGCCTATGTCACGGCTGAAAGGATCAAGAAGGCAAAAAATCTACAACTTCTGCTGACAGCTGGAATTGGATCAGATCATGTTGATCTGAAAGCTGCTGCTGCTGCTGGATTGACAGTAGCAGAGGTCACTGGAAGCAATACTGTCTCAGTTGCGGAAGATGAACTGATGCGAATCTTAATTCTTGTCCGAAATTTCTTACCT</genome_strand>
        <mrna_strand>CCCTTTCCTATAAAAAGCCGTTACGTCTCTCCAGTAAGTCATCTCAGCCAACTGGAGTTTATTCTTCTCTCTGTTTTTAGTAAGTACGAAACCCTTTTCTGTAAATCCAAAAAAAATTCCGATGGCGATGAGGCGTGTAGCTTCTACAGCAGCTCGTGCTATTGCTTCACCTTCATCCTTAGTTTTTACCAGAGAACTTCAG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCTTCCCCTGGCCCCAAAAAGATTGTGGGTGTTTTCTACAAAGCAAATGAATATGCTGAAATGAACCCCAACTTTTTGGGCTGTGCAGAAAATGCCTTGGGGATACGTGAATGGTTAGAGTCTAAAGGTCATCAGTACATAGTCACTCCTGACAAAGAAGGACCAGATTGTG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGCTTGAGAAACACATTCCTGATCTCCATGTGTTGATTTCGACCCCTTTTCATCCTGCCTATGTCACGGCTGANAGGATCAAGAAGGCAAAAAATCTACAACTTCTGCTGACAGCTGGAATTGGATCAGATCATGTTGATCTGAAAGCTGCTGCTGCTGCTGGATTGACAGTAGCAGAGGTCACTGGAAGC-ATACTGTCTCAGTTGCNGAAGATGAACTGATGCGAATCTTAATTCTTGTCCGAAA-TTCTTACCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0236E02-u8qcS/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E306010" ref_strand="+" ref_description="SGN-E306010 [cLEY-17-F10]">
      <seq>cctttcctataaaaagccgttacgtctctccagtaagtcatctcagccaactggagtttattcttctctctgtttttagtaagtacgaaacccttttctgtaaatccaaaaaaaattccgatggcgatgaggcgtgtagcttctacagcagctcgtgctattgcttcaccttcatccttagtttttaccagagaacttcaggcttcccctggccccaaaaagattgtgggtgttttctacaaagcaaatgaatatgctgaaatgaaccccaactttttgggctgtgcagaaaatgccttggggatacgtgaatggttagagtctaaaggtcatcagtacatagtcactcctgacaaagaaggaccagattgtgagcttgagaaacacattcctgatctccatgtgttgatttcgaccccttttcatcctgcctatgtcacggctgaaaggatcaagaaggcaaaaaatctacaacttctgctgacagctggaattggatcagatcatgttgatctgaaagctgctgctgctgctggattgacagtagcagaggtcactggaagcaatactgtctcagttgcggaagatgaactgatgcgaatcttaattcttgtccgaaatttcttacctggacatcatc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0236E02-u8qcS/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0236E02.1" temp_strand="+" temp_description="C02HBa0236E02.1  AC215430.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0236E02 sequenced_by:kribb upload_account_name:korea">
        <position start="65189" stop="68331"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="65489" g_stop="65689" g_length="201"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="201" r_length="201" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="65690" i_stop="66849" i_length="1160">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="66850" g_stop="67021" g_length="172"/>
          <reference_exon_boundary r_type="cDNA" r_start="202" r_stop="373" r_length="172" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="67022" i_stop="67764" i_length="743">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="0.987" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="67765" g_stop="68031" g_length="267"/>
          <reference_exon_boundary r_type="cDNA" r_start="374" r_stop="640" r_length="267" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0236E02.1" gen_strand="+" ref_id="SGN-E306010" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>640</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0236E02.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E306010" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="65489" e_stop="65689"/>
          <exon e_start="66850" e_stop="67021"/>
          <exon e_start="67765" e_stop="68031"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCTTTCCTATAAAAAGCCGTTACGTCTCTCCAGTAAGTCATCTCAGCCAACTGGAGTTTATTCTTCTCTCTGTTTTTAGTAAGTACGAAACCCTTTTCTGTAAATCCAAAAAAAATTCCGATGGCGATGAGGCGTGTAGCTTCTACAGCAGCTCGTGCTATTGCTTCACCTTCATCCTTAGTTTTTACCAGAGAACTTCAGGTAACTAGCCATTTCTCCTCAATAGCCACTTTTTGTTGCTTTTGTTTTATATGACCTAGTTTTCGCCCTTTGATGAATTATCGGAAACCGGCACGGATCAACTCCGATTTTTCGAGAATCAAGTGAGTTGGAGATTGGAACAGAGGAAACTAAAGGAATTTAACCGTGTAAAGGAAAAAATTAAACACACTGTATTTGGTGCTCTACCCCTCGTCTCTTCTTTTTGGCTTTCCCCGTACTCTACACACCAAATGAAATGGCTCGGATATGAAAGGACTAATAACTTTTCAGTTTTCATTACTGCGTCCTTTTTTAAGCTTTCAGTTTTAATTTGCGTGAATATACCTAATTTTTATTAGGGTAGAGTTATATGTTTCAAATTAAATTGCTACCAAGTTAAATTTAAGAATGTTACATAAATTTAGAGACGGCAAGTTTATATACCAAGAAGGGTACTCCTTCATCCACAGAGAAACGGTGTCCAGTTCGAGTATGGGCGTGAATCTAGATATAGTTAATTCCAATGCAGATATCAGACATCGAGTGAGGAAAAAAAAGATTTTATTAATTTGTTATTTTTAGGTTGCTTTTCCTTTAACTGAAAATCTAACCCGGCAGGACCACAACAGTTCTTTTCCGATCATTACTAATGATACTTGATTTTCACGTGCGATTTCTGATATTTTTATACGGAGTAGGTGAAGAGTGAAATGTTTCACGGGTCTCAAGGACAATGGCAGCAGTGCTTCATTTTTTTTTGCATCTTCACGTGCTATATTATTACTTTGTTTATACTAGTTCGACTTGGAAAATCTTTTCATATTCAGTTGTCTGGGGAATAAATAAGATATTTCTTATTTTTTGATTAAAAAAAGAAGAAGATATTTCTTATTTAAAGAAGTGACAAATTGTACTAACTCATTTACCATGCCTAATATATTATATGTGACAATGATGATTTTTTTTAACTATTAATTGTTAGTTTGGACAAAAATGATCAAAGCAAGTATATTGAATAATGCTTATTTCTTGCCAACTGGTGCATCTACGAGATTATAGGAGTTGGATTATAATTTTAGCACATCCAGCATGCTTATATGACCTTAAAATATTCATGTATATTCTGTCCACTCACCTTTTATTTCTTCATTATTTTACAGGCTTCCCCTGGCCCCAAAAAGATTGTGGGTGTTTTCTACAAAGCAAATGAATATGCTGAAATGAACCCCAACTTTTTGGGCTGTGCAGAAAATGCCTTGGGGATACGTGAATGGTTAGAGTCTAAAGGTCATCAGTACATAGTCACTCCTGACAAAGAAGGACCAGATTGTGGTTAGTTCCTGCTAATCTATAATCTCTCATGTTCTATCCATTATCCCACTGAAGCCTATGCATTTCTAAAGATAATTTCTTTACCCTTCATGCTTGTACAACTAAACACATCTTAAAAGGAGTATTTTTGCATTTAAAACATGCATATATGTGCTGAAGTTTTTTAAAAATATATGGCTCACGTGAGGAGAATATAACGGTCATAGCAGGAACATTTATTTAGATAAAGAGCAAAGCAAAGTAAACAATATTTGCTTTGTTAGTGTTGGTCCTTTGCTGCTAGTGAATTATGATCAGGACATTGTGAGGTAGTTTCTTGCAGGAGGGAAAAAAAGAGTGTATTTTACCTTGATATACAGGTGTGCATTTGCAAAACGTCTATACTTCAGGACTCAGGTGTAAGTTGTACTAGTTTGATAAGACTATGGCTAAATTTTGTAATTTAAACAAGGATTTATCAAAGTCGCAGGGGCTTGTTTAGTTGTTGAGTAGAGTGCACACATGGATGCTTTAGTGATTTTCTGATGGATGACATGCTTAGTGTAAATCCTTGCTTATTAGTATCTTTTATCATGAGAAAGAATGGTGCCCTAGTCTGACACACAAACTACTCTGTGTCTTAGTTTTTCACTGTTGAATCCTTTACTATGCTCTATGCAAAGAAATTTCTCCTGAGCTAAAGTTTTTGAGTGTGTCCATCTATAATAGCTTCTTTTTTTTTTCCCATGACTTTCTCTCTGCAGAGCTTGAGAAACACATTCCTGATCTCCATGTGTTGATTTCGACCCCTTTTCATCCTGCCTATGTCACGGCTGAAAGGATCAAGAAGGCAAAAAATCTACAACTTCTGCTGACAGCTGGAATTGGATCAGATCATGTTGATCTGAAAGCTGCTGCTGCTGCTGGATTGACAGTAGCAGAGGTCACTGGAAGCAATACTGTCTCAGTTGCGGAAGATGAACTGATGCGAATCTTAATTCTTGTCCGAAATTTCTTACCTGGACATCATC</genome_strand>
        <mrna_strand>CCTTTCCTATAAAAAGCCGTTACGTCTCTCCAGTAAGTCATCTCAGCCAACTGGAGTTTATTCTTCTCTCTGTTTTTAGTAAGTACGAAACCCTTTTCTGTAAATCCAAAAAAAATTCCGATGGCGATGAGGCGTGTAGCTTCTACAGCAGCTCGTGCTATTGCTTCACCTTCATCCTTAGTTTTTACCAGAGAACTTCAG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCTTCCCCTGGCCCCAAAAAGATTGTGGGTGTTTTCTACAAAGCAAATGAATATGCTGAAATGAACCCCAACTTTTTGGGCTGTGCAGAAAATGCCTTGGGGATACGTGAATGGTTAGAGTCTAAAGGTCATCAGTACATAGTCACTCCTGACAAAGAAGGACCAGATTGTG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGCTTGAGAAACACATTCCTGATCTCCATGTGTTGATTTCGACCCCTTTTCATCCTGCCTATGTCACGGCTGAAAGGATCAAGAAGGCAAAAAATCTACAACTTCTGCTGACAGCTGGAATTGGATCAGATCATGTTGATCTGAAAGCTGCTGCTGCTGCTGGATTGACAGTAGCAGAGGTCACTGGAAGCAATACTGTCTCAGTTGCGGAAGATGAACTGATGCGAATCTTAATTCTTGTCCGAAATTTCTTACCTGGACATCATC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0236E02-u8qcS/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E624064" ref_strand="+" ref_description="SGN-E624064 [GI|3821729]">
      <seq>atctcaaccaactggagtgtattcttctctctgtttttaccaagtacaaaaccctttgctgtaaatccaaaaaattccgatggcgatgagtcgtgtagcttctacagcagctcgtgctattacttcaccttcatccttagtttttaccagagaacttcaggcttcccctggccccaaaaagattgtgggtgttttctacaaagcaaatgaatatgctgaaatgaaccccaactttttgggctgtgcagaaaatgccttggggatacgtgaatggttagaatc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0236E02-u8qcS/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0236E02.1" temp_strand="+" temp_description="C02HBa0236E02.1  AC215430.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0236E02 sequenced_by:kribb upload_account_name:korea">
        <position start="65228" stop="67271"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="65528" g_stop="65689" g_length="162"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="160" r_length="160" r_score="0.938"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="65690" i_stop="66849" i_length="1160">
            <donor d_prob="1.000" d_score="0.98"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="66850" g_stop="66971" g_length="122"/>
          <reference_exon_boundary r_type="cDNA" r_start="161" r_stop="282" r_length="122" r_score="0.992"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0236E02.1" gen_strand="+" ref_id="SGN-E624064" ref_strand="+">
        <total_alignment_score>0.961</total_alignment_score>
        <cumulative_length_of_scored_exons>284</cumulative_length_of_scored_exons>
        <coverage percentage="1.007" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0236E02.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E624064" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="65528" e_stop="65689"/>
          <exon e_start="66850" e_stop="66971"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATCTCAGCCAACTGGAGTTTATTCTTCTCTCTGTTTTTAGTAAGTACGAAACCCTTTTCTGTAAATCCAAAAAAAATTCCGATGGCGATGAGGCGTGTAGCTTCTACAGCAGCTCGTGCTATTGCTTCACCTTCATCCTTAGTTTTTACCAGAGAACTTCAGGTAACTAGCCATTTCTCCTCAATAGCCACTTTTTGTTGCTTTTGTTTTATATGACCTAGTTTTCGCCCTTTGATGAATTATCGGAAACCGGCACGGATCAACTCCGATTTTTCGAGAATCAAGTGAGTTGGAGATTGGAACAGAGGAAACTAAAGGAATTTAACCGTGTAAAGGAAAAAATTAAACACACTGTATTTGGTGCTCTACCCCTCGTCTCTTCTTTTTGGCTTTCCCCGTACTCTACACACCAAATGAAATGGCTCGGATATGAAAGGACTAATAACTTTTCAGTTTTCATTACTGCGTCCTTTTTTAAGCTTTCAGTTTTAATTTGCGTGAATATACCTAATTTTTATTAGGGTAGAGTTATATGTTTCAAATTAAATTGCTACCAAGTTAAATTTAAGAATGTTACATAAATTTAGAGACGGCAAGTTTATATACCAAGAAGGGTACTCCTTCATCCACAGAGAAACGGTGTCCAGTTCGAGTATGGGCGTGAATCTAGATATAGTTAATTCCAATGCAGATATCAGACATCGAGTGAGGAAAAAAAAGATTTTATTAATTTGTTATTTTTAGGTTGCTTTTCCTTTAACTGAAAATCTAACCCGGCAGGACCACAACAGTTCTTTTCCGATCATTACTAATGATACTTGATTTTCACGTGCGATTTCTGATATTTTTATACGGAGTAGGTGAAGAGTGAAATGTTTCACGGGTCTCAAGGACAATGGCAGCAGTGCTTCATTTTTTTTTGCATCTTCACGTGCTATATTATTACTTTGTTTATACTAGTTCGACTTGGAAAATCTTTTCATATTCAGTTGTCTGGGGAATAAATAAGATATTTCTTATTTTTTGATTAAAAAAAGAAGAAGATATTTCTTATTTAAAGAAGTGACAAATTGTACTAACTCATTTACCATGCCTAATATATTATATGTGACAATGATGATTTTTTTTAACTATTAATTGTTAGTTTGGACAAAAATGATCAAAGCAAGTATATTGAATAATGCTTATTTCTTGCCAACTGGTGCATCTACGAGATTATAGGAGTTGGATTATAATTTTAGCACATCCAGCATGCTTATATGACCTTAAAATATTCATGTATATTCTGTCCACTCACCTTTTATTTCTTCATTATTTTACAGGCTTCCCCTGGCCCCAAAAAGATTGTGGGTGTTTTCTACAAAGCAAATGAATATGCTGAAATGAACCCCAACTTTTTGGGCTGTGCAGAAAATGCCTTGGGGATACGTGAATGGTTAGAGTC</genome_strand>
        <mrna_strand>ATCTCAACCAACTGGAGTGTATTCTTCTCTCTGTTTTTACCAAGTACAAAACCCTTTGCTGTAAATCC--AAAAAATTCCGATGGCGATGAGTCGTGTAGCTTCTACAGCAGCTCGTGCTATTACTTCACCTTCATCCTTAGTTTTTACCAGAGAACTTCAG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCTTCCCCTGGCCCCAAAAAGATTGTGGGTGTTTTCTACAAAGCAAATGAATATGCTGAAATGAACCCCAACTTTTTGGGCTGTGCAGAAAATGCCTTGGGGATACGTGAATGGTTAGAATC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0236E02-u8qcS/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E579738" ref_strand="+" ref_description="SGN-E579738 [86870]">
      <seq>gcacgaggctggagttattcttctctctgtttttagcaagtacaaaaccctttgctgtaaatccaaaaaattccgatggcgatgagtcgtgtagcttctacagcagctcgtgctattacttcaccttcatccttagttttaccagagaacttcaggcttcccctggccccaaaaagattgtgggtgttttctacaaagcaaatgaatatgctgaaatgaaccccaactttttgggctgtgcagaaaatgccttggggatacgtgaatggttagaatctaaaggtcatcagtacatagtcactcctgacaaagaaggaccagattgtgagcttgagaaacacattcctgatctccatgtgttgatttcgaccccttttcatcctgcctatgtcacggctgaaaggatcaagaaggcaaaaaatctacaactactgctgacagctggaattggatcagatcatgttgatctgaaagctgctgctgctgctggattgaca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0236E02-u8qcS/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0236E02.1" temp_strand="+" temp_description="C02HBa0236E02.1  AC215430.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0236E02 sequenced_by:kribb upload_account_name:korea">
        <position start="65239" stop="68234"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="65531" g_stop="65689" g_length="159"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="155" r_length="155" r_score="0.906"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="65690" i_stop="66849" i_length="1160">
            <donor d_prob="1.000" d_score="0.96"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="66850" g_stop="67021" g_length="172"/>
          <reference_exon_boundary r_type="cDNA" r_start="156" r_stop="327" r_length="172" r_score="0.994"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="67022" i_stop="67764" i_length="743">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="0.987" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="67765" g_stop="67934" g_length="170"/>
          <reference_exon_boundary r_type="cDNA" r_start="328" r_stop="497" r_length="170" r_score="0.994"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0236E02.1" gen_strand="+" ref_id="SGN-E579738" ref_strand="+">
        <total_alignment_score>0.966</total_alignment_score>
        <cumulative_length_of_scored_exons>501</cumulative_length_of_scored_exons>
        <coverage percentage="1.008" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0236E02.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E579738" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="65531" e_stop="65689"/>
          <exon e_start="66850" e_stop="67021"/>
          <exon e_start="67765" e_stop="67934"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCAGCCAACTGGAGTTTATTCTTCTCTCTGTTTTTAGTAAGTACGAAACCCTTTTCTGTAAATCCAAAAAAAATTCCGATGGCGATGAGGCGTGTAGCTTCTACAGCAGCTCGTGCTATTGCTTCACCTTCATCCTTAGTTTTTACCAGAGAACTTCAGGTAACTAGCCATTTCTCCTCAATAGCCACTTTTTGTTGCTTTTGTTTTATATGACCTAGTTTTCGCCCTTTGATGAATTATCGGAAACCGGCACGGATCAACTCCGATTTTTCGAGAATCAAGTGAGTTGGAGATTGGAACAGAGGAAACTAAAGGAATTTAACCGTGTAAAGGAAAAAATTAAACACACTGTATTTGGTGCTCTACCCCTCGTCTCTTCTTTTTGGCTTTCCCCGTACTCTACACACCAAATGAAATGGCTCGGATATGAAAGGACTAATAACTTTTCAGTTTTCATTACTGCGTCCTTTTTTAAGCTTTCAGTTTTAATTTGCGTGAATATACCTAATTTTTATTAGGGTAGAGTTATATGTTTCAAATTAAATTGCTACCAAGTTAAATTTAAGAATGTTACATAAATTTAGAGACGGCAAGTTTATATACCAAGAAGGGTACTCCTTCATCCACAGAGAAACGGTGTCCAGTTCGAGTATGGGCGTGAATCTAGATATAGTTAATTCCAATGCAGATATCAGACATCGAGTGAGGAAAAAAAAGATTTTATTAATTTGTTATTTTTAGGTTGCTTTTCCTTTAACTGAAAATCTAACCCGGCAGGACCACAACAGTTCTTTTCCGATCATTACTAATGATACTTGATTTTCACGTGCGATTTCTGATATTTTTATACGGAGTAGGTGAAGAGTGAAATGTTTCACGGGTCTCAAGGACAATGGCAGCAGTGCTTCATTTTTTTTTGCATCTTCACGTGCTATATTATTACTTTGTTTATACTAGTTCGACTTGGAAAATCTTTTCATATTCAGTTGTCTGGGGAATAAATAAGATATTTCTTATTTTTTGATTAAAAAAAGAAGAAGATATTTCTTATTTAAAGAAGTGACAAATTGTACTAACTCATTTACCATGCCTAATATATTATATGTGACAATGATGATTTTTTTTAACTATTAATTGTTAGTTTGGACAAAAATGATCAAAGCAAGTATATTGAATAATGCTTATTTCTTGCCAACTGGTGCATCTACGAGATTATAGGAGTTGGATTATAATTTTAGCACATCCAGCATGCTTATATGACCTTAAAATATTCATGTATATTCTGTCCACTCACCTTTTATTTCTTCATTATTTTACAGGCTTCCCCTGGCCCCAAAAAGATTGTGGGTGTTTTCTACAAAGCAAATGAATATGCTGAAATGAACCCCAACTTTTTGGGCTGTGCAGAAAATGCCTTGGGGATACGTGAATGGTTAGAGTCTAAAGGTCATCAGTACATAGTCACTCCTGACAAAGAAGGACCAGATTGTGGTTAGTTCCTGCTAATCTATAATCTCTCATGTTCTATCCATTATCCCACTGAAGCCTATGCATTTCTAAAGATAATTTCTTTACCCTTCATGCTTGTACAACTAAACACATCTTAAAAGGAGTATTTTTGCATTTAAAACATGCATATATGTGCTGAAGTTTTTTAAAAATATATGGCTCACGTGAGGAGAATATAACGGTCATAGCAGGAACATTTATTTAGATAAAGAGCAAAGCAAAGTAAACAATATTTGCTTTGTTAGTGTTGGTCCTTTGCTGCTAGTGAATTATGATCAGGACATTGTGAGGTAGTTTCTTGCAGGAGGGAAAAAAAGAGTGTATTTTACCTTGATATACAGGTGTGCATTTGCAAAACGTCTATACTTCAGGACTCAGGTGTAAGTTGTACTAGTTTGATAAGACTATGGCTAAATTTTGTAATTTAAACAAGGATTTATCAAAGTCGCAGGGGCTTGTTTAGTTGTTGAGTAGAGTGCACACATGGATGCTTTAGTGATTTTCTGATGGATGACATGCTTAGTGTAAATCCTTGCTTATTAGTATCTTTTATCATGAGAAAGAATGGTGCCCTAGTCTGACACACAAACTACTCTGTGTCTTAGTTTTTCACTGTTGAATCCTTTACTATGCTCTATGCAAAGAAATTTCTCCTGAGCTAAAGTTTTTGAGTGTGTCCATCTATAATAGCTTCTTTTTTTTTTCCCATGACTTTCTCTCTGCAGAGCTTGAGAAACACATTCCTGATCTCCATGTGTTGATTTCGACCCCTTTTCATCCTGCCTATGTCACGGCTGAAAGGATCAAGAAGGCAAAAAATCTACAACTTCTGCTGACAGCTGGAATTGGATCAGATCATGTTGATCTGAAAGCTGCTGCTGCTGCTGGATTGACA</genome_strand>
        <mrna_strand>GCACGAGGCTGGAGT-TATTCTTCTCTCTGTTTTTAGCAAGTACAAAACCCTTTGCTGTAAATCCAAA--AAATTCCGATGGCGATGAGTCGTGTAGCTTCTACAGCAGCTCGTGCTATTACTTCACCTTCATCCTTAG-TTTTACCAGAGAACTTCAG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCTTCCCCTGGCCCCAAAAAGATTGTGGGTGTTTTCTACAAAGCAAATGAATATGCTGAAATGAACCCCAACTTTTTGGGCTGTGCAGAAAATGCCTTGGGGATACGTGAATGGTTAGAATCTAAAGGTCATCAGTACATAGTCACTCCTGACAAAGAAGGACCAGATTGTG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGCTTGAGAAACACATTCCTGATCTCCATGTGTTGATTTCGACCCCTTTTCATCCTGCCTATGTCACGGCTGAAAGGATCAAGAAGGCAAAAAATCTACAACTACTGCTGACAGCTGGAATTGGATCAGATCATGTTGATCTGAAAGCTGCTGCTGCTGCTGGATTGACA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0236E02-u8qcS/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E275589" ref_strand="+" ref_description="SGN-E275589 [cLEN-10-P7]">
      <seq>actggagtttattcttctctctgtttttagtaagtacgaaacccttttctgtaaatccaaaaaaaattccgatggcgatgaggcgtgtagcttctacagcagctcgtgctattgcttcaccttcatccttagtttttaccagagaacttcaggcttcccctggccccaaaaagattgtgggtgttttctacaaagcaaatgaatatgctgaaatgaaccccaactttttgggctgtgcagaaaatgccttggggatacgtgaatggttagagtctaaaggtcatcagtacatagtcactcctgacaaagaaggaccagattgtgagcttgagaaacacattcctgatctccatgtgttgatttcgaccccttttcatcctgcctatgtcacggctgaaaggatcaagaaggcaaaaaatctacaacttctgctgacagctggaattggatcagatcatgttgatctgaaagctgctgctgctgctggattgacagtagcagaggtcactggaagcaatactgtctcagttgcggaagatgaactgatgcgaatct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0236E02-u8qcS/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0236E02.1" temp_strand="+" temp_description="C02HBa0236E02.1  AC215430.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0236E02 sequenced_by:kribb upload_account_name:korea">
        <position start="65238" stop="68295"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="65538" g_stop="65689" g_length="152"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="152" r_length="152" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="65690" i_stop="66849" i_length="1160">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="66850" g_stop="67021" g_length="172"/>
          <reference_exon_boundary r_type="cDNA" r_start="153" r_stop="324" r_length="172" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="67022" i_stop="67764" i_length="743">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="0.987" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="67765" g_stop="67995" g_length="231"/>
          <reference_exon_boundary r_type="cDNA" r_start="325" r_stop="555" r_length="231" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0236E02.1" gen_strand="+" ref_id="SGN-E275589" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>555</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0236E02.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E275589" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="65538" e_stop="65689"/>
          <exon e_start="66850" e_stop="67021"/>
          <exon e_start="67765" e_stop="67995"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACTGGAGTTTATTCTTCTCTCTGTTTTTAGTAAGTACGAAACCCTTTTCTGTAAATCCAAAAAAAATTCCGATGGCGATGAGGCGTGTAGCTTCTACAGCAGCTCGTGCTATTGCTTCACCTTCATCCTTAGTTTTTACCAGAGAACTTCAGGTAACTAGCCATTTCTCCTCAATAGCCACTTTTTGTTGCTTTTGTTTTATATGACCTAGTTTTCGCCCTTTGATGAATTATCGGAAACCGGCACGGATCAACTCCGATTTTTCGAGAATCAAGTGAGTTGGAGATTGGAACAGAGGAAACTAAAGGAATTTAACCGTGTAAAGGAAAAAATTAAACACACTGTATTTGGTGCTCTACCCCTCGTCTCTTCTTTTTGGCTTTCCCCGTACTCTACACACCAAATGAAATGGCTCGGATATGAAAGGACTAATAACTTTTCAGTTTTCATTACTGCGTCCTTTTTTAAGCTTTCAGTTTTAATTTGCGTGAATATACCTAATTTTTATTAGGGTAGAGTTATATGTTTCAAATTAAATTGCTACCAAGTTAAATTTAAGAATGTTACATAAATTTAGAGACGGCAAGTTTATATACCAAGAAGGGTACTCCTTCATCCACAGAGAAACGGTGTCCAGTTCGAGTATGGGCGTGAATCTAGATATAGTTAATTCCAATGCAGATATCAGACATCGAGTGAGGAAAAAAAAGATTTTATTAATTTGTTATTTTTAGGTTGCTTTTCCTTTAACTGAAAATCTAACCCGGCAGGACCACAACAGTTCTTTTCCGATCATTACTAATGATACTTGATTTTCACGTGCGATTTCTGATATTTTTATACGGAGTAGGTGAAGAGTGAAATGTTTCACGGGTCTCAAGGACAATGGCAGCAGTGCTTCATTTTTTTTTGCATCTTCACGTGCTATATTATTACTTTGTTTATACTAGTTCGACTTGGAAAATCTTTTCATATTCAGTTGTCTGGGGAATAAATAAGATATTTCTTATTTTTTGATTAAAAAAAGAAGAAGATATTTCTTATTTAAAGAAGTGACAAATTGTACTAACTCATTTACCATGCCTAATATATTATATGTGACAATGATGATTTTTTTTAACTATTAATTGTTAGTTTGGACAAAAATGATCAAAGCAAGTATATTGAATAATGCTTATTTCTTGCCAACTGGTGCATCTACGAGATTATAGGAGTTGGATTATAATTTTAGCACATCCAGCATGCTTATATGACCTTAAAATATTCATGTATATTCTGTCCACTCACCTTTTATTTCTTCATTATTTTACAGGCTTCCCCTGGCCCCAAAAAGATTGTGGGTGTTTTCTACAAAGCAAATGAATATGCTGAAATGAACCCCAACTTTTTGGGCTGTGCAGAAAATGCCTTGGGGATACGTGAATGGTTAGAGTCTAAAGGTCATCAGTACATAGTCACTCCTGACAAAGAAGGACCAGATTGTGGTTAGTTCCTGCTAATCTATAATCTCTCATGTTCTATCCATTATCCCACTGAAGCCTATGCATTTCTAAAGATAATTTCTTTACCCTTCATGCTTGTACAACTAAACACATCTTAAAAGGAGTATTTTTGCATTTAAAACATGCATATATGTGCTGAAGTTTTTTAAAAATATATGGCTCACGTGAGGAGAATATAACGGTCATAGCAGGAACATTTATTTAGATAAAGAGCAAAGCAAAGTAAACAATATTTGCTTTGTTAGTGTTGGTCCTTTGCTGCTAGTGAATTATGATCAGGACATTGTGAGGTAGTTTCTTGCAGGAGGGAAAAAAAGAGTGTATTTTACCTTGATATACAGGTGTGCATTTGCAAAACGTCTATACTTCAGGACTCAGGTGTAAGTTGTACTAGTTTGATAAGACTATGGCTAAATTTTGTAATTTAAACAAGGATTTATCAAAGTCGCAGGGGCTTGTTTAGTTGTTGAGTAGAGTGCACACATGGATGCTTTAGTGATTTTCTGATGGATGACATGCTTAGTGTAAATCCTTGCTTATTAGTATCTTTTATCATGAGAAAGAATGGTGCCCTAGTCTGACACACAAACTACTCTGTGTCTTAGTTTTTCACTGTTGAATCCTTTACTATGCTCTATGCAAAGAAATTTCTCCTGAGCTAAAGTTTTTGAGTGTGTCCATCTATAATAGCTTCTTTTTTTTTTCCCATGACTTTCTCTCTGCAGAGCTTGAGAAACACATTCCTGATCTCCATGTGTTGATTTCGACCCCTTTTCATCCTGCCTATGTCACGGCTGAAAGGATCAAGAAGGCAAAAAATCTACAACTTCTGCTGACAGCTGGAATTGGATCAGATCATGTTGATCTGAAAGCTGCTGCTGCTGCTGGATTGACAGTAGCAGAGGTCACTGGAAGCAATACTGTCTCAGTTGCGGAAGATGAACTGATGCGAATCT</genome_strand>
        <mrna_strand>ACTGGAGTTTATTCTTCTCTCTGTTTTTAGTAAGTACGAAACCCTTTTCTGTAAATCCAAAAAAAATTCCGATGGCGATGAGGCGTGTAGCTTCTACAGCAGCTCGTGCTATTGCTTCACCTTCATCCTTAGTTTTTACCAGAGAACTTCAG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCTTCCCCTGGCCCCAAAAAGATTGTGGGTGTTTTCTACAAAGCAAATGAATATGCTGAAATGAACCCCAACTTTTTGGGCTGTGCAGAAAATGCCTTGGGGATACGTGAATGGTTAGAGTCTAAAGGTCATCAGTACATAGTCACTCCTGACAAAGAAGGACCAGATTGTG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGCTTGAGAAACACATTCCTGATCTCCATGTGTTGATTTCGACCCCTTTTCATCCTGCCTATGTCACGGCTGAAAGGATCAAGAAGGCAAAAAATCTACAACTTCTGCTGACAGCTGGAATTGGATCAGATCATGTTGATCTGAAAGCTGCTGCTGCTGCTGGATTGACAGTAGCAGAGGTCACTGGAAGCAATACTGTCTCAGTTGCGGAAGATGAACTGATGCGAATCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0236E02-u8qcS/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E463322" ref_strand="+" ref_description="SGN-E463322 [cPRO-14-C24]">
      <seq>ctggagtgtattcttctctctgtttttaccaagtacaaaaccctttgctgtaaatccaaaaaattccgatggcgatgagtcgtgtagcttctacagcagctcgtgctattacttcaccttcatccttagtttttaccagagaacttcaggcttcccctggccccaaaaagattgtgggtgttttctacaaagcaaatgaatatgctgaaatgaaccccaactttttgggctgtgcagaaaatgccttggggatacgtgaatggttagaatctaaaggtcatcagtacatagtcactcctgacaaagaaggaccagattgtgagcttgagaaacacattcctgatctccatgtgttgatttcgaccccttttcatcctgcctatgtcacggctgaaaggatcaagaaggcaaaaaatctacaactactgctgacagctggaattggatcagatcatgttgatctgaaagctgctgctgctgctggattgacagtagcagaggtcactggaagcaatactgtctcagttgcggaagatgaactgatgcgaatcttaattcttgtccgaaatttcttgcctggacatcatcaggttatcaatggggagtggaatgttgctgcaattgcgcacagagcttatgatttggaaggcaagactgttggaactgttggtgcaggacgtattggcagacttttactccaacgattgaagccatttaactgtaatctactttaccatgaccgtcttaagatggattctgagctagagaaatcaattgga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0236E02-u8qcS/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0236E02.1" temp_strand="+" temp_description="C02HBa0236E02.1  AC215430.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0236E02 sequenced_by:kribb upload_account_name:korea">
        <position start="65239" stop="68522"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="65539" g_stop="65689" g_length="151"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="149" r_length="149" r_score="0.940"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="65690" i_stop="66849" i_length="1160">
            <donor d_prob="1.000" d_score="0.98"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="66850" g_stop="67021" g_length="172"/>
          <reference_exon_boundary r_type="cDNA" r_start="150" r_stop="321" r_length="172" r_score="0.994"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="67022" i_stop="67764" i_length="743">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="0.987" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="67765" g_stop="68222" g_length="458"/>
          <reference_exon_boundary r_type="cDNA" r_start="322" r_stop="779" r_length="458" r_score="0.987"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0236E02.1" gen_strand="+" ref_id="SGN-E463322" ref_strand="+">
        <total_alignment_score>0.980</total_alignment_score>
        <cumulative_length_of_scored_exons>781</cumulative_length_of_scored_exons>
        <coverage percentage="1.003" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0236E02.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E463322" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="65539" e_stop="65689"/>
          <exon e_start="66850" e_stop="67021"/>
          <exon e_start="67765" e_stop="68222"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTGGAGTTTATTCTTCTCTCTGTTTTTAGTAAGTACGAAACCCTTTTCTGTAAATCCAAAAAAAATTCCGATGGCGATGAGGCGTGTAGCTTCTACAGCAGCTCGTGCTATTGCTTCACCTTCATCCTTAGTTTTTACCAGAGAACTTCAGGTAACTAGCCATTTCTCCTCAATAGCCACTTTTTGTTGCTTTTGTTTTATATGACCTAGTTTTCGCCCTTTGATGAATTATCGGAAACCGGCACGGATCAACTCCGATTTTTCGAGAATCAAGTGAGTTGGAGATTGGAACAGAGGAAACTAAAGGAATTTAACCGTGTAAAGGAAAAAATTAAACACACTGTATTTGGTGCTCTACCCCTCGTCTCTTCTTTTTGGCTTTCCCCGTACTCTACACACCAAATGAAATGGCTCGGATATGAAAGGACTAATAACTTTTCAGTTTTCATTACTGCGTCCTTTTTTAAGCTTTCAGTTTTAATTTGCGTGAATATACCTAATTTTTATTAGGGTAGAGTTATATGTTTCAAATTAAATTGCTACCAAGTTAAATTTAAGAATGTTACATAAATTTAGAGACGGCAAGTTTATATACCAAGAAGGGTACTCCTTCATCCACAGAGAAACGGTGTCCAGTTCGAGTATGGGCGTGAATCTAGATATAGTTAATTCCAATGCAGATATCAGACATCGAGTGAGGAAAAAAAAGATTTTATTAATTTGTTATTTTTAGGTTGCTTTTCCTTTAACTGAAAATCTAACCCGGCAGGACCACAACAGTTCTTTTCCGATCATTACTAATGATACTTGATTTTCACGTGCGATTTCTGATATTTTTATACGGAGTAGGTGAAGAGTGAAATGTTTCACGGGTCTCAAGGACAATGGCAGCAGTGCTTCATTTTTTTTTGCATCTTCACGTGCTATATTATTACTTTGTTTATACTAGTTCGACTTGGAAAATCTTTTCATATTCAGTTGTCTGGGGAATAAATAAGATATTTCTTATTTTTTGATTAAAAAAAGAAGAAGATATTTCTTATTTAAAGAAGTGACAAATTGTACTAACTCATTTACCATGCCTAATATATTATATGTGACAATGATGATTTTTTTTAACTATTAATTGTTAGTTTGGACAAAAATGATCAAAGCAAGTATATTGAATAATGCTTATTTCTTGCCAACTGGTGCATCTACGAGATTATAGGAGTTGGATTATAATTTTAGCACATCCAGCATGCTTATATGACCTTAAAATATTCATGTATATTCTGTCCACTCACCTTTTATTTCTTCATTATTTTACAGGCTTCCCCTGGCCCCAAAAAGATTGTGGGTGTTTTCTACAAAGCAAATGAATATGCTGAAATGAACCCCAACTTTTTGGGCTGTGCAGAAAATGCCTTGGGGATACGTGAATGGTTAGAGTCTAAAGGTCATCAGTACATAGTCACTCCTGACAAAGAAGGACCAGATTGTGGTTAGTTCCTGCTAATCTATAATCTCTCATGTTCTATCCATTATCCCACTGAAGCCTATGCATTTCTAAAGATAATTTCTTTACCCTTCATGCTTGTACAACTAAACACATCTTAAAAGGAGTATTTTTGCATTTAAAACATGCATATATGTGCTGAAGTTTTTTAAAAATATATGGCTCACGTGAGGAGAATATAACGGTCATAGCAGGAACATTTATTTAGATAAAGAGCAAAGCAAAGTAAACAATATTTGCTTTGTTAGTGTTGGTCCTTTGCTGCTAGTGAATTATGATCAGGACATTGTGAGGTAGTTTCTTGCAGGAGGGAAAAAAAGAGTGTATTTTACCTTGATATACAGGTGTGCATTTGCAAAACGTCTATACTTCAGGACTCAGGTGTAAGTTGTACTAGTTTGATAAGACTATGGCTAAATTTTGTAATTTAAACAAGGATTTATCAAAGTCGCAGGGGCTTGTTTAGTTGTTGAGTAGAGTGCACACATGGATGCTTTAGTGATTTTCTGATGGATGACATGCTTAGTGTAAATCCTTGCTTATTAGTATCTTTTATCATGAGAAAGAATGGTGCCCTAGTCTGACACACAAACTACTCTGTGTCTTAGTTTTTCACTGTTGAATCCTTTACTATGCTCTATGCAAAGAAATTTCTCCTGAGCTAAAGTTTTTGAGTGTGTCCATCTATAATAGCTTCTTTTTTTTTTCCCATGACTTTCTCTCTGCAGAGCTTGAGAAACACATTCCTGATCTCCATGTGTTGATTTCGACCCCTTTTCATCCTGCCTATGTCACGGCTGAAAGGATCAAGAAGGCAAAAAATCTACAACTTCTGCTGACAGCTGGAATTGGATCAGATCATGTTGATCTGAAAGCTGCTGCTGCTGCTGGATTGACAGTAGCAGAGGTCACTGGAAGCAATACTGTCTCAGTTGCGGAAGATGAACTGATGCGAATCTTAATTCTTGTCCGAAATTTCTTACCTGGACATCATCAGGTTATCAATGGGGAGTGGAATGTTGCTGCAATTGCGCACAGAGCTTATGATTTGGAAGGCAAGACTGTTGGAACTGTTGGTGCAGGACGTATTGGCAGACTTTTACTCCAGCGATTGAAGCCATTTAACTGTAATCTACTTTACCATGACCGTCTTAAGATGGATTCTGAGCTAGAGAATCAAATTGGA</genome_strand>
        <mrna_strand>CTGGAGTGTATTCTTCTCTCTGTTTTTACCAAGTACAAAACCCTTTGCTGTAAATCC--AAAAAATTCCGATGGCGATGAGTCGTGTAGCTTCTACAGCAGCTCGTGCTATTACTTCACCTTCATCCTTAGTTTTTACCAGAGAACTTCAG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCTTCCCCTGGCCCCAAAAAGATTGTGGGTGTTTTCTACAAAGCAAATGAATATGCTGAAATGAACCCCAACTTTTTGGGCTGTGCAGAAAATGCCTTGGGGATACGTGAATGGTTAGAATCTAAAGGTCATCAGTACATAGTCACTCCTGACAAAGAAGGACCAGATTGTG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGCTTGAGAAACACATTCCTGATCTCCATGTGTTGATTTCGACCCCTTTTCATCCTGCCTATGTCACGGCTGAAAGGATCAAGAAGGCAAAAAATCTACAACTACTGCTGACAGCTGGAATTGGATCAGATCATGTTGATCTGAAAGCTGCTGCTGCTGCTGGATTGACAGTAGCAGAGGTCACTGGAAGCAATACTGTCTCAGTTGCGGAAGATGAACTGATGCGAATCTTAATTCTTGTCCGAAATTTCTTGCCTGGACATCATCAGGTTATCAATGGGGAGTGGAATGTTGCTGCAATTGCGCACAGAGCTTATGATTTGGAAGGCAAGACTGTTGGAACTGTTGGTGCAGGACGTATTGGCAGACTTTTACTCCAACGATTGAAGCCATTTAACTGTAATCTACTTTACCATGACCGTCTTAAGATGGATTCTGAGCTAGAGAAATCAATTGGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0236E02-u8qcS/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E477905" ref_strand="+" ref_description="SGN-E477905 [cSTD-2-O15]">
      <seq>ctggagtgtattcttctctctgtttttagcaaagtacaaaaccctttgctgtaaatccaaaaaattccgatggcgatgagtcgtgtagcttctacagcagctcgtgctattacttcaccttcatccttagtttttaccagagaacttcaggcttcccctggccccaaaaagattgtgggtgttttctacaaagcaaatgaatatgctgaaatgaaccccaactttttgggctgtgcagaaaatgccttggggatacgtgaatggttagaatctaaaggtcatcagtacatagtcactcctgacaaagaaggaccagattgtgagcttgagaaacacattcctgatctccatgtgttgatttcgaccccttttcatcctgcctatgtcacggctgaaaggatcaagaaggcaaaaaatctacaactactgctgacagctggaattggatcagatcatgttgatctgaaagctgctgctgctgctggattgacagtggcagaagtcactggaagcaatactgtctcagttgcggaagatgaactgatgcgaatcttaattcttgtccgaaatttcttgcctggacatcatcangttatcaatggggagtgggatgttgctgcaat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0236E02-u8qcS/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0236E02.1" temp_strand="+" temp_description="C02HBa0236E02.1  AC215430.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0236E02 sequenced_by:kribb upload_account_name:korea">
        <position start="65239" stop="68365"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="65539" g_stop="65689" g_length="151"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="150" r_length="150" r_score="0.934"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="65690" i_stop="66849" i_length="1160">
            <donor d_prob="1.000" d_score="0.98"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="66850" g_stop="67021" g_length="172"/>
          <reference_exon_boundary r_type="cDNA" r_start="151" r_stop="322" r_length="172" r_score="0.994"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="67022" i_stop="67764" i_length="743">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="0.987" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="67765" g_stop="68065" g_length="301"/>
          <reference_exon_boundary r_type="cDNA" r_start="323" r_stop="623" r_length="301" r_score="0.980"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0236E02.1" gen_strand="+" ref_id="SGN-E477905" ref_strand="+">
        <total_alignment_score>0.973</total_alignment_score>
        <cumulative_length_of_scored_exons>624</cumulative_length_of_scored_exons>
        <coverage percentage="1.002" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0236E02.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E477905" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="65539" e_stop="65689"/>
          <exon e_start="66850" e_stop="67021"/>
          <exon e_start="67765" e_stop="68065"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTGGAGTTTATTCTTCTCTCTGTTTTTAG-TAAGTACGAAACCCTTTTCTGTAAATCCAAAAAAAATTCCGATGGCGATGAGGCGTGTAGCTTCTACAGCAGCTCGTGCTATTGCTTCACCTTCATCCTTAGTTTTTACCAGAGAACTTCAGGTAACTAGCCATTTCTCCTCAATAGCCACTTTTTGTTGCTTTTGTTTTATATGACCTAGTTTTCGCCCTTTGATGAATTATCGGAAACCGGCACGGATCAACTCCGATTTTTCGAGAATCAAGTGAGTTGGAGATTGGAACAGAGGAAACTAAAGGAATTTAACCGTGTAAAGGAAAAAATTAAACACACTGTATTTGGTGCTCTACCCCTCGTCTCTTCTTTTTGGCTTTCCCCGTACTCTACACACCAAATGAAATGGCTCGGATATGAAAGGACTAATAACTTTTCAGTTTTCATTACTGCGTCCTTTTTTAAGCTTTCAGTTTTAATTTGCGTGAATATACCTAATTTTTATTAGGGTAGAGTTATATGTTTCAAATTAAATTGCTACCAAGTTAAATTTAAGAATGTTACATAAATTTAGAGACGGCAAGTTTATATACCAAGAAGGGTACTCCTTCATCCACAGAGAAACGGTGTCCAGTTCGAGTATGGGCGTGAATCTAGATATAGTTAATTCCAATGCAGATATCAGACATCGAGTGAGGAAAAAAAAGATTTTATTAATTTGTTATTTTTAGGTTGCTTTTCCTTTAACTGAAAATCTAACCCGGCAGGACCACAACAGTTCTTTTCCGATCATTACTAATGATACTTGATTTTCACGTGCGATTTCTGATATTTTTATACGGAGTAGGTGAAGAGTGAAATGTTTCACGGGTCTCAAGGACAATGGCAGCAGTGCTTCATTTTTTTTTGCATCTTCACGTGCTATATTATTACTTTGTTTATACTAGTTCGACTTGGAAAATCTTTTCATATTCAGTTGTCTGGGGAATAAATAAGATATTTCTTATTTTTTGATTAAAAAAAGAAGAAGATATTTCTTATTTAAAGAAGTGACAAATTGTACTAACTCATTTACCATGCCTAATATATTATATGTGACAATGATGATTTTTTTTAACTATTAATTGTTAGTTTGGACAAAAATGATCAAAGCAAGTATATTGAATAATGCTTATTTCTTGCCAACTGGTGCATCTACGAGATTATAGGAGTTGGATTATAATTTTAGCACATCCAGCATGCTTATATGACCTTAAAATATTCATGTATATTCTGTCCACTCACCTTTTATTTCTTCATTATTTTACAGGCTTCCCCTGGCCCCAAAAAGATTGTGGGTGTTTTCTACAAAGCAAATGAATATGCTGAAATGAACCCCAACTTTTTGGGCTGTGCAGAAAATGCCTTGGGGATACGTGAATGGTTAGAGTCTAAAGGTCATCAGTACATAGTCACTCCTGACAAAGAAGGACCAGATTGTGGTTAGTTCCTGCTAATCTATAATCTCTCATGTTCTATCCATTATCCCACTGAAGCCTATGCATTTCTAAAGATAATTTCTTTACCCTTCATGCTTGTACAACTAAACACATCTTAAAAGGAGTATTTTTGCATTTAAAACATGCATATATGTGCTGAAGTTTTTTAAAAATATATGGCTCACGTGAGGAGAATATAACGGTCATAGCAGGAACATTTATTTAGATAAAGAGCAAAGCAAAGTAAACAATATTTGCTTTGTTAGTGTTGGTCCTTTGCTGCTAGTGAATTATGATCAGGACATTGTGAGGTAGTTTCTTGCAGGAGGGAAAAAAAGAGTGTATTTTACCTTGATATACAGGTGTGCATTTGCAAAACGTCTATACTTCAGGACTCAGGTGTAAGTTGTACTAGTTTGATAAGACTATGGCTAAATTTTGTAATTTAAACAAGGATTTATCAAAGTCGCAGGGGCTTGTTTAGTTGTTGAGTAGAGTGCACACATGGATGCTTTAGTGATTTTCTGATGGATGACATGCTTAGTGTAAATCCTTGCTTATTAGTATCTTTTATCATGAGAAAGAATGGTGCCCTAGTCTGACACACAAACTACTCTGTGTCTTAGTTTTTCACTGTTGAATCCTTTACTATGCTCTATGCAAAGAAATTTCTCCTGAGCTAAAGTTTTTGAGTGTGTCCATCTATAATAGCTTCTTTTTTTTTTCCCATGACTTTCTCTCTGCAGAGCTTGAGAAACACATTCCTGATCTCCATGTGTTGATTTCGACCCCTTTTCATCCTGCCTATGTCACGGCTGAAAGGATCAAGAAGGCAAAAAATCTACAACTTCTGCTGACAGCTGGAATTGGATCAGATCATGTTGATCTGAAAGCTGCTGCTGCTGCTGGATTGACAGTAGCAGAGGTCACTGGAAGCAATACTGTCTCAGTTGCGGAAGATGAACTGATGCGAATCTTAATTCTTGTCCGAAATTTCTTACCTGGACATCATCAGGTTATCAATGGGGAGTGGAATGTTGCTGCAAT</genome_strand>
        <mrna_strand>CTGGAGTGTATTCTTCTCTCTGTTTTTAGCAAAGTACAAAACCCTTTGCTGTAAATCC--AAAAAATTCCGATGGCGATGAGTCGTGTAGCTTCTACAGCAGCTCGTGCTATTACTTCACCTTCATCCTTAGTTTTTACCAGAGAACTTCAG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCTTCCCCTGGCCCCAAAAAGATTGTGGGTGTTTTCTACAAAGCAAATGAATATGCTGAAATGAACCCCAACTTTTTGGGCTGTGCAGAAAATGCCTTGGGGATACGTGAATGGTTAGAATCTAAAGGTCATCAGTACATAGTCACTCCTGACAAAGAAGGACCAGATTGTG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGCTTGAGAAACACATTCCTGATCTCCATGTGTTGATTTCGACCCCTTTTCATCCTGCCTATGTCACGGCTGAAAGGATCAAGAAGGCAAAAAATCTACAACTACTGCTGACAGCTGGAATTGGATCAGATCATGTTGATCTGAAAGCTGCTGCTGCTGCTGGATTGACAGTGGCAGAAGTCACTGGAAGCAATACTGTCTCAGTTGCGGAAGATGAACTGATGCGAATCTTAATTCTTGTCCGAAATTTCTTGCCTGGACATCATCANGTTATCAATGGGGAGTGGGATGTTGCTGCAAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0236E02-u8qcS/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E606855" ref_strand="+" ref_description="SGN-E606855 [22808]">
      <seq>ctggagtgtattcttctctctgtttttaccaagtacaaaaccctttgctgtaaatccaaaaaattccgatggcgatgagtcgtgtagcttctacagcagctcgtgctattacttcaccttcatccttagtttttaccagagaacttcaggcttcccctggccccaaaaagattgtgggtgttttctacaaagcaaatgaatatgctgaaatgaaccccaactttttgggctgtgcagaaaatgccttggggatacgtgaatggttagaatctaaaggtcatcagtacatagtcactcctgacaaagaaggaccagattgtgagcttgagaaacacattcctgatctccatgtgttgatttcgaccccttttcatcctgcctatgtcacggctgaaaggatcaagaaggcaaaaaatctacaactactgctgacagctggaattggatcagatcatgttgatctgaaagctgctgctgctgctggattgacagtagcagaggtcactggaagcaatactg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0236E02-u8qcS/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0236E02.1" temp_strand="+" temp_description="C02HBa0236E02.1  AC215430.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0236E02 sequenced_by:kribb upload_account_name:korea">
        <position start="65239" stop="68262"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="65539" g_stop="65689" g_length="151"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="149" r_length="149" r_score="0.940"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="65690" i_stop="66849" i_length="1160">
            <donor d_prob="1.000" d_score="0.98"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="66850" g_stop="67021" g_length="172"/>
          <reference_exon_boundary r_type="cDNA" r_start="150" r_stop="321" r_length="172" r_score="0.994"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="67022" i_stop="67764" i_length="743">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="0.987" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="67765" g_stop="67962" g_length="198"/>
          <reference_exon_boundary r_type="cDNA" r_start="322" r_stop="519" r_length="198" r_score="0.995"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0236E02.1" gen_strand="+" ref_id="SGN-E606855" ref_strand="+">
        <total_alignment_score>0.979</total_alignment_score>
        <cumulative_length_of_scored_exons>521</cumulative_length_of_scored_exons>
        <coverage percentage="1.004" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0236E02.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E606855" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="65539" e_stop="65689"/>
          <exon e_start="66850" e_stop="67021"/>
          <exon e_start="67765" e_stop="67962"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTGGAGTTTATTCTTCTCTCTGTTTTTAGTAAGTACGAAACCCTTTTCTGTAAATCCAAAAAAAATTCCGATGGCGATGAGGCGTGTAGCTTCTACAGCAGCTCGTGCTATTGCTTCACCTTCATCCTTAGTTTTTACCAGAGAACTTCAGGTAACTAGCCATTTCTCCTCAATAGCCACTTTTTGTTGCTTTTGTTTTATATGACCTAGTTTTCGCCCTTTGATGAATTATCGGAAACCGGCACGGATCAACTCCGATTTTTCGAGAATCAAGTGAGTTGGAGATTGGAACAGAGGAAACTAAAGGAATTTAACCGTGTAAAGGAAAAAATTAAACACACTGTATTTGGTGCTCTACCCCTCGTCTCTTCTTTTTGGCTTTCCCCGTACTCTACACACCAAATGAAATGGCTCGGATATGAAAGGACTAATAACTTTTCAGTTTTCATTACTGCGTCCTTTTTTAAGCTTTCAGTTTTAATTTGCGTGAATATACCTAATTTTTATTAGGGTAGAGTTATATGTTTCAAATTAAATTGCTACCAAGTTAAATTTAAGAATGTTACATAAATTTAGAGACGGCAAGTTTATATACCAAGAAGGGTACTCCTTCATCCACAGAGAAACGGTGTCCAGTTCGAGTATGGGCGTGAATCTAGATATAGTTAATTCCAATGCAGATATCAGACATCGAGTGAGGAAAAAAAAGATTTTATTAATTTGTTATTTTTAGGTTGCTTTTCCTTTAACTGAAAATCTAACCCGGCAGGACCACAACAGTTCTTTTCCGATCATTACTAATGATACTTGATTTTCACGTGCGATTTCTGATATTTTTATACGGAGTAGGTGAAGAGTGAAATGTTTCACGGGTCTCAAGGACAATGGCAGCAGTGCTTCATTTTTTTTTGCATCTTCACGTGCTATATTATTACTTTGTTTATACTAGTTCGACTTGGAAAATCTTTTCATATTCAGTTGTCTGGGGAATAAATAAGATATTTCTTATTTTTTGATTAAAAAAAGAAGAAGATATTTCTTATTTAAAGAAGTGACAAATTGTACTAACTCATTTACCATGCCTAATATATTATATGTGACAATGATGATTTTTTTTAACTATTAATTGTTAGTTTGGACAAAAATGATCAAAGCAAGTATATTGAATAATGCTTATTTCTTGCCAACTGGTGCATCTACGAGATTATAGGAGTTGGATTATAATTTTAGCACATCCAGCATGCTTATATGACCTTAAAATATTCATGTATATTCTGTCCACTCACCTTTTATTTCTTCATTATTTTACAGGCTTCCCCTGGCCCCAAAAAGATTGTGGGTGTTTTCTACAAAGCAAATGAATATGCTGAAATGAACCCCAACTTTTTGGGCTGTGCAGAAAATGCCTTGGGGATACGTGAATGGTTAGAGTCTAAAGGTCATCAGTACATAGTCACTCCTGACAAAGAAGGACCAGATTGTGGTTAGTTCCTGCTAATCTATAATCTCTCATGTTCTATCCATTATCCCACTGAAGCCTATGCATTTCTAAAGATAATTTCTTTACCCTTCATGCTTGTACAACTAAACACATCTTAAAAGGAGTATTTTTGCATTTAAAACATGCATATATGTGCTGAAGTTTTTTAAAAATATATGGCTCACGTGAGGAGAATATAACGGTCATAGCAGGAACATTTATTTAGATAAAGAGCAAAGCAAAGTAAACAATATTTGCTTTGTTAGTGTTGGTCCTTTGCTGCTAGTGAATTATGATCAGGACATTGTGAGGTAGTTTCTTGCAGGAGGGAAAAAAAGAGTGTATTTTACCTTGATATACAGGTGTGCATTTGCAAAACGTCTATACTTCAGGACTCAGGTGTAAGTTGTACTAGTTTGATAAGACTATGGCTAAATTTTGTAATTTAAACAAGGATTTATCAAAGTCGCAGGGGCTTGTTTAGTTGTTGAGTAGAGTGCACACATGGATGCTTTAGTGATTTTCTGATGGATGACATGCTTAGTGTAAATCCTTGCTTATTAGTATCTTTTATCATGAGAAAGAATGGTGCCCTAGTCTGACACACAAACTACTCTGTGTCTTAGTTTTTCACTGTTGAATCCTTTACTATGCTCTATGCAAAGAAATTTCTCCTGAGCTAAAGTTTTTGAGTGTGTCCATCTATAATAGCTTCTTTTTTTTTTCCCATGACTTTCTCTCTGCAGAGCTTGAGAAACACATTCCTGATCTCCATGTGTTGATTTCGACCCCTTTTCATCCTGCCTATGTCACGGCTGAAAGGATCAAGAAGGCAAAAAATCTACAACTTCTGCTGACAGCTGGAATTGGATCAGATCATGTTGATCTGAAAGCTGCTGCTGCTGCTGGATTGACAGTAGCAGAGGTCACTGGAAGCAATACTG</genome_strand>
        <mrna_strand>CTGGAGTGTATTCTTCTCTCTGTTTTTACCAAGTACAAAACCCTTTGCTGTAAATCC--AAAAAATTCCGATGGCGATGAGTCGTGTAGCTTCTACAGCAGCTCGTGCTATTACTTCACCTTCATCCTTAGTTTTTACCAGAGAACTTCAG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCTTCCCCTGGCCCCAAAAAGATTGTGGGTGTTTTCTACAAAGCAAATGAATATGCTGAAATGAACCCCAACTTTTTGGGCTGTGCAGAAAATGCCTTGGGGATACGTGAATGGTTAGAATCTAAAGGTCATCAGTACATAGTCACTCCTGACAAAGAAGGACCAGATTGTG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGCTTGAGAAACACATTCCTGATCTCCATGTGTTGATTTCGACCCCTTTTCATCCTGCCTATGTCACGGCTGAAAGGATCAAGAAGGCAAAAAATCTACAACTACTGCTGACAGCTGGAATTGGATCAGATCATGTTGATCTGAAAGCTGCTGCTGCTGCTGGATTGACAGTAGCAGAGGTCACTGGAAGCAATACTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0236E02-u8qcS/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E338733" ref_strand="+" ref_description="SGN-E338733 [cTOE-21-A2]">
      <seq>ggggagtttattcttctctctgtttttagtaagtacgaaacccttttctgtaaatccaaaaaaaattccgatggcgatgaggcgtgtagcttctacagcagctcgtgctattgcttcaccttcatccttagtttttaccagagaacttcaggcttcccctggccccaaaaagattgtgggtgttttctacaaagcaaatgaatatgctgaaatgaaccccaactttttgggctgt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0236E02-u8qcS/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0236E02.1" temp_strand="+" temp_description="C02HBa0236E02.1  AC215430.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0236E02 sequenced_by:kribb upload_account_name:korea">
        <position start="65241" stop="67233"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="65539" g_stop="65689" g_length="151"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="151" r_length="151" r_score="0.987"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="65690" i_stop="66849" i_length="1160">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="66850" g_stop="66933" g_length="84"/>
          <reference_exon_boundary r_type="cDNA" r_start="152" r_stop="235" r_length="84" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0236E02.1" gen_strand="+" ref_id="SGN-E338733" ref_strand="+">
        <total_alignment_score>0.991</total_alignment_score>
        <cumulative_length_of_scored_exons>235</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0236E02.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E338733" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="65539" e_stop="65689"/>
          <exon e_start="66850" e_stop="66933"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTGGAGTTTATTCTTCTCTCTGTTTTTAGTAAGTACGAAACCCTTTTCTGTAAATCCAAAAAAAATTCCGATGGCGATGAGGCGTGTAGCTTCTACAGCAGCTCGTGCTATTGCTTCACCTTCATCCTTAGTTTTTACCAGAGAACTTCAGGTAACTAGCCATTTCTCCTCAATAGCCACTTTTTGTTGCTTTTGTTTTATATGACCTAGTTTTCGCCCTTTGATGAATTATCGGAAACCGGCACGGATCAACTCCGATTTTTCGAGAATCAAGTGAGTTGGAGATTGGAACAGAGGAAACTAAAGGAATTTAACCGTGTAAAGGAAAAAATTAAACACACTGTATTTGGTGCTCTACCCCTCGTCTCTTCTTTTTGGCTTTCCCCGTACTCTACACACCAAATGAAATGGCTCGGATATGAAAGGACTAATAACTTTTCAGTTTTCATTACTGCGTCCTTTTTTAAGCTTTCAGTTTTAATTTGCGTGAATATACCTAATTTTTATTAGGGTAGAGTTATATGTTTCAAATTAAATTGCTACCAAGTTAAATTTAAGAATGTTACATAAATTTAGAGACGGCAAGTTTATATACCAAGAAGGGTACTCCTTCATCCACAGAGAAACGGTGTCCAGTTCGAGTATGGGCGTGAATCTAGATATAGTTAATTCCAATGCAGATATCAGACATCGAGTGAGGAAAAAAAAGATTTTATTAATTTGTTATTTTTAGGTTGCTTTTCCTTTAACTGAAAATCTAACCCGGCAGGACCACAACAGTTCTTTTCCGATCATTACTAATGATACTTGATTTTCACGTGCGATTTCTGATATTTTTATACGGAGTAGGTGAAGAGTGAAATGTTTCACGGGTCTCAAGGACAATGGCAGCAGTGCTTCATTTTTTTTTGCATCTTCACGTGCTATATTATTACTTTGTTTATACTAGTTCGACTTGGAAAATCTTTTCATATTCAGTTGTCTGGGGAATAAATAAGATATTTCTTATTTTTTGATTAAAAAAAGAAGAAGATATTTCTTATTTAAAGAAGTGACAAATTGTACTAACTCATTTACCATGCCTAATATATTATATGTGACAATGATGATTTTTTTTAACTATTAATTGTTAGTTTGGACAAAAATGATCAAAGCAAGTATATTGAATAATGCTTATTTCTTGCCAACTGGTGCATCTACGAGATTATAGGAGTTGGATTATAATTTTAGCACATCCAGCATGCTTATATGACCTTAAAATATTCATGTATATTCTGTCCACTCACCTTTTATTTCTTCATTATTTTACAGGCTTCCCCTGGCCCCAAAAAGATTGTGGGTGTTTTCTACAAAGCAAATGAATATGCTGAAATGAACCCCAACTTTTTGGGCTGT</genome_strand>
        <mrna_strand>GGGGAGTTTATTCTTCTCTCTGTTTTTAGTAAGTACGAAACCCTTTTCTGTAAATCCAAAAAAAATTCCGATGGCGATGAGGCGTGTAGCTTCTACAGCAGCTCGTGCTATTGCTTCACCTTCATCCTTAGTTTTTACCAGAGAACTTCAG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCTTCCCCTGGCCCCAAAAAGATTGTGGGTGTTTTCTACAAAGCAAATGAATATGCTGAAATGAACCCCAACTTTTTGGGCTGT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0236E02-u8qcS/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E341514" ref_strand="+" ref_description="SGN-E341514 [cTOE-23-C11]">
      <seq>tggagtttattcttctctctgtttttagtaagtacgaaacccttttctgtaaatccaaaaaaaattccgatggcgatgaggcgtgtagcttctacagcagctcgtgctattgcttcaccttcatccttagtttttaccagagaacttcaggcttcccctggccccaaaaagattgtgggtgttttctacaaagcaaatgaatatgctgaaatgaaccccaactttttgggctgtgcagaaaatgccttggggatacgtgaatggttagagtctaaaggtcatcagtacatagtcactcctgacaaagaaggaccagattgtgagcttgagaaacacattcctgatctccatgtgttgatttcgaccccttttcatcctgcctatgtcacggctgaaaggatcaagaaggcaaaaaatctacaacttctgctgacagctggaattggatcagatcatgttgatctgaaagctgctgctgctgctggattgacagtagcagaggtcactggaagcaatactgtctcagttgcggaagatgaactgatgcgaatcttaattcttgtccgaaatttcttacctggacatcatcaggttatcaatggggagtggaatgttgctgcaattgcgcacagagcttatgatttgga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0236E02-u8qcS/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0236E02.1" temp_strand="+" temp_description="C02HBa0236E02.1  AC215430.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0236E02 sequenced_by:kribb upload_account_name:korea">
        <position start="65240" stop="68389"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="65540" g_stop="65689" g_length="150"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="150" r_length="150" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="65690" i_stop="66849" i_length="1160">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="66850" g_stop="67021" g_length="172"/>
          <reference_exon_boundary r_type="cDNA" r_start="151" r_stop="322" r_length="172" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="67022" i_stop="67764" i_length="743">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="0.987" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="67765" g_stop="68089" g_length="325"/>
          <reference_exon_boundary r_type="cDNA" r_start="323" r_stop="647" r_length="325" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0236E02.1" gen_strand="+" ref_id="SGN-E341514" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>647</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0236E02.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E341514" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="65540" e_stop="65689"/>
          <exon e_start="66850" e_stop="67021"/>
          <exon e_start="67765" e_stop="68089"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGGAGTTTATTCTTCTCTCTGTTTTTAGTAAGTACGAAACCCTTTTCTGTAAATCCAAAAAAAATTCCGATGGCGATGAGGCGTGTAGCTTCTACAGCAGCTCGTGCTATTGCTTCACCTTCATCCTTAGTTTTTACCAGAGAACTTCAGGTAACTAGCCATTTCTCCTCAATAGCCACTTTTTGTTGCTTTTGTTTTATATGACCTAGTTTTCGCCCTTTGATGAATTATCGGAAACCGGCACGGATCAACTCCGATTTTTCGAGAATCAAGTGAGTTGGAGATTGGAACAGAGGAAACTAAAGGAATTTAACCGTGTAAAGGAAAAAATTAAACACACTGTATTTGGTGCTCTACCCCTCGTCTCTTCTTTTTGGCTTTCCCCGTACTCTACACACCAAATGAAATGGCTCGGATATGAAAGGACTAATAACTTTTCAGTTTTCATTACTGCGTCCTTTTTTAAGCTTTCAGTTTTAATTTGCGTGAATATACCTAATTTTTATTAGGGTAGAGTTATATGTTTCAAATTAAATTGCTACCAAGTTAAATTTAAGAATGTTACATAAATTTAGAGACGGCAAGTTTATATACCAAGAAGGGTACTCCTTCATCCACAGAGAAACGGTGTCCAGTTCGAGTATGGGCGTGAATCTAGATATAGTTAATTCCAATGCAGATATCAGACATCGAGTGAGGAAAAAAAAGATTTTATTAATTTGTTATTTTTAGGTTGCTTTTCCTTTAACTGAAAATCTAACCCGGCAGGACCACAACAGTTCTTTTCCGATCATTACTAATGATACTTGATTTTCACGTGCGATTTCTGATATTTTTATACGGAGTAGGTGAAGAGTGAAATGTTTCACGGGTCTCAAGGACAATGGCAGCAGTGCTTCATTTTTTTTTGCATCTTCACGTGCTATATTATTACTTTGTTTATACTAGTTCGACTTGGAAAATCTTTTCATATTCAGTTGTCTGGGGAATAAATAAGATATTTCTTATTTTTTGATTAAAAAAAGAAGAAGATATTTCTTATTTAAAGAAGTGACAAATTGTACTAACTCATTTACCATGCCTAATATATTATATGTGACAATGATGATTTTTTTTAACTATTAATTGTTAGTTTGGACAAAAATGATCAAAGCAAGTATATTGAATAATGCTTATTTCTTGCCAACTGGTGCATCTACGAGATTATAGGAGTTGGATTATAATTTTAGCACATCCAGCATGCTTATATGACCTTAAAATATTCATGTATATTCTGTCCACTCACCTTTTATTTCTTCATTATTTTACAGGCTTCCCCTGGCCCCAAAAAGATTGTGGGTGTTTTCTACAAAGCAAATGAATATGCTGAAATGAACCCCAACTTTTTGGGCTGTGCAGAAAATGCCTTGGGGATACGTGAATGGTTAGAGTCTAAAGGTCATCAGTACATAGTCACTCCTGACAAAGAAGGACCAGATTGTGGTTAGTTCCTGCTAATCTATAATCTCTCATGTTCTATCCATTATCCCACTGAAGCCTATGCATTTCTAAAGATAATTTCTTTACCCTTCATGCTTGTACAACTAAACACATCTTAAAAGGAGTATTTTTGCATTTAAAACATGCATATATGTGCTGAAGTTTTTTAAAAATATATGGCTCACGTGAGGAGAATATAACGGTCATAGCAGGAACATTTATTTAGATAAAGAGCAAAGCAAAGTAAACAATATTTGCTTTGTTAGTGTTGGTCCTTTGCTGCTAGTGAATTATGATCAGGACATTGTGAGGTAGTTTCTTGCAGGAGGGAAAAAAAGAGTGTATTTTACCTTGATATACAGGTGTGCATTTGCAAAACGTCTATACTTCAGGACTCAGGTGTAAGTTGTACTAGTTTGATAAGACTATGGCTAAATTTTGTAATTTAAACAAGGATTTATCAAAGTCGCAGGGGCTTGTTTAGTTGTTGAGTAGAGTGCACACATGGATGCTTTAGTGATTTTCTGATGGATGACATGCTTAGTGTAAATCCTTGCTTATTAGTATCTTTTATCATGAGAAAGAATGGTGCCCTAGTCTGACACACAAACTACTCTGTGTCTTAGTTTTTCACTGTTGAATCCTTTACTATGCTCTATGCAAAGAAATTTCTCCTGAGCTAAAGTTTTTGAGTGTGTCCATCTATAATAGCTTCTTTTTTTTTTCCCATGACTTTCTCTCTGCAGAGCTTGAGAAACACATTCCTGATCTCCATGTGTTGATTTCGACCCCTTTTCATCCTGCCTATGTCACGGCTGAAAGGATCAAGAAGGCAAAAAATCTACAACTTCTGCTGACAGCTGGAATTGGATCAGATCATGTTGATCTGAAAGCTGCTGCTGCTGCTGGATTGACAGTAGCAGAGGTCACTGGAAGCAATACTGTCTCAGTTGCGGAAGATGAACTGATGCGAATCTTAATTCTTGTCCGAAATTTCTTACCTGGACATCATCAGGTTATCAATGGGGAGTGGAATGTTGCTGCAATTGCGCACAGAGCTTATGATTTGGA</genome_strand>
        <mrna_strand>TGGAGTTTATTCTTCTCTCTGTTTTTAGTAAGTACGAAACCCTTTTCTGTAAATCCAAAAAAAATTCCGATGGCGATGAGGCGTGTAGCTTCTACAGCAGCTCGTGCTATTGCTTCACCTTCATCCTTAGTTTTTACCAGAGAACTTCAG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCTTCCCCTGGCCCCAAAAAGATTGTGGGTGTTTTCTACAAAGCAAATGAATATGCTGAAATGAACCCCAACTTTTTGGGCTGTGCAGAAAATGCCTTGGGGATACGTGAATGGTTAGAGTCTAAAGGTCATCAGTACATAGTCACTCCTGACAAAGAAGGACCAGATTGTG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGCTTGAGAAACACATTCCTGATCTCCATGTGTTGATTTCGACCCCTTTTCATCCTGCCTATGTCACGGCTGAAAGGATCAAGAAGGCAAAAAATCTACAACTTCTGCTGACAGCTGGAATTGGATCAGATCATGTTGATCTGAAAGCTGCTGCTGCTGCTGGATTGACAGTAGCAGAGGTCACTGGAAGCAATACTGTCTCAGTTGCGGAAGATGAACTGATGCGAATCTTAATTCTTGTCCGAAATTTCTTACCTGGACATCATCAGGTTATCAATGGGGAGTGGAATGTTGCTGCAATTGCGCACAGAGCTTATGATTTGGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0236E02-u8qcS/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E270090" ref_strand="+" ref_description="SGN-E270090 [cLEM-7-D13]">
      <seq>tggagtttattcttctctctgtttttagtaagtacgaaaccgttttctgtaaatccaaaaaaaattccgatggcgatgaggcgtgtagcttctacagcagctcgtgctattgcttcaccttcatccttagtttttaccagagaacttcaggcttcccctggccccaaaaagattgtgggtgttttctacaaagcaaatgaatatgctgaaatgaaccccaactttttgggctgtgcagaaaatgccttggggatacgtgaatggttagagtctaaaggtcatcagtacatagtcactcctgacaaagaaggaccagattgtgagcttgagaaacacattcctgatctccatgtgttgatttcgaccccttttcatcctgcctatgtcacggctgaaaggatcaagaaggcaaaaaatctacaacttctgctgacagctggaattggatcagatcatgttgatctgaaagctgctgctgctgctggattgacagtagcagaggtcactggaagcaatactgtctcagttgcggaagatgaactgatgcgaatcttaattc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0236E02-u8qcS/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0236E02.1" temp_strand="+" temp_description="C02HBa0236E02.1  AC215430.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0236E02 sequenced_by:kribb upload_account_name:korea">
        <position start="65240" stop="68301"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="65540" g_stop="65689" g_length="150"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="150" r_length="150" r_score="0.993"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="65690" i_stop="66849" i_length="1160">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="66850" g_stop="67021" g_length="172"/>
          <reference_exon_boundary r_type="cDNA" r_start="151" r_stop="322" r_length="172" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="67022" i_stop="67764" i_length="743">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="0.987" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="67765" g_stop="68001" g_length="237"/>
          <reference_exon_boundary r_type="cDNA" r_start="323" r_stop="559" r_length="237" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0236E02.1" gen_strand="+" ref_id="SGN-E270090" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>559</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0236E02.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E270090" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="65540" e_stop="65689"/>
          <exon e_start="66850" e_stop="67021"/>
          <exon e_start="67765" e_stop="68001"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGGAGTTTATTCTTCTCTCTGTTTTTAGTAAGTACGAAACCCTTTTCTGTAAATCCAAAAAAAATTCCGATGGCGATGAGGCGTGTAGCTTCTACAGCAGCTCGTGCTATTGCTTCACCTTCATCCTTAGTTTTTACCAGAGAACTTCAGGTAACTAGCCATTTCTCCTCAATAGCCACTTTTTGTTGCTTTTGTTTTATATGACCTAGTTTTCGCCCTTTGATGAATTATCGGAAACCGGCACGGATCAACTCCGATTTTTCGAGAATCAAGTGAGTTGGAGATTGGAACAGAGGAAACTAAAGGAATTTAACCGTGTAAAGGAAAAAATTAAACACACTGTATTTGGTGCTCTACCCCTCGTCTCTTCTTTTTGGCTTTCCCCGTACTCTACACACCAAATGAAATGGCTCGGATATGAAAGGACTAATAACTTTTCAGTTTTCATTACTGCGTCCTTTTTTAAGCTTTCAGTTTTAATTTGCGTGAATATACCTAATTTTTATTAGGGTAGAGTTATATGTTTCAAATTAAATTGCTACCAAGTTAAATTTAAGAATGTTACATAAATTTAGAGACGGCAAGTTTATATACCAAGAAGGGTACTCCTTCATCCACAGAGAAACGGTGTCCAGTTCGAGTATGGGCGTGAATCTAGATATAGTTAATTCCAATGCAGATATCAGACATCGAGTGAGGAAAAAAAAGATTTTATTAATTTGTTATTTTTAGGTTGCTTTTCCTTTAACTGAAAATCTAACCCGGCAGGACCACAACAGTTCTTTTCCGATCATTACTAATGATACTTGATTTTCACGTGCGATTTCTGATATTTTTATACGGAGTAGGTGAAGAGTGAAATGTTTCACGGGTCTCAAGGACAATGGCAGCAGTGCTTCATTTTTTTTTGCATCTTCACGTGCTATATTATTACTTTGTTTATACTAGTTCGACTTGGAAAATCTTTTCATATTCAGTTGTCTGGGGAATAAATAAGATATTTCTTATTTTTTGATTAAAAAAAGAAGAAGATATTTCTTATTTAAAGAAGTGACAAATTGTACTAACTCATTTACCATGCCTAATATATTATATGTGACAATGATGATTTTTTTTAACTATTAATTGTTAGTTTGGACAAAAATGATCAAAGCAAGTATATTGAATAATGCTTATTTCTTGCCAACTGGTGCATCTACGAGATTATAGGAGTTGGATTATAATTTTAGCACATCCAGCATGCTTATATGACCTTAAAATATTCATGTATATTCTGTCCACTCACCTTTTATTTCTTCATTATTTTACAGGCTTCCCCTGGCCCCAAAAAGATTGTGGGTGTTTTCTACAAAGCAAATGAATATGCTGAAATGAACCCCAACTTTTTGGGCTGTGCAGAAAATGCCTTGGGGATACGTGAATGGTTAGAGTCTAAAGGTCATCAGTACATAGTCACTCCTGACAAAGAAGGACCAGATTGTGGTTAGTTCCTGCTAATCTATAATCTCTCATGTTCTATCCATTATCCCACTGAAGCCTATGCATTTCTAAAGATAATTTCTTTACCCTTCATGCTTGTACAACTAAACACATCTTAAAAGGAGTATTTTTGCATTTAAAACATGCATATATGTGCTGAAGTTTTTTAAAAATATATGGCTCACGTGAGGAGAATATAACGGTCATAGCAGGAACATTTATTTAGATAAAGAGCAAAGCAAAGTAAACAATATTTGCTTTGTTAGTGTTGGTCCTTTGCTGCTAGTGAATTATGATCAGGACATTGTGAGGTAGTTTCTTGCAGGAGGGAAAAAAAGAGTGTATTTTACCTTGATATACAGGTGTGCATTTGCAAAACGTCTATACTTCAGGACTCAGGTGTAAGTTGTACTAGTTTGATAAGACTATGGCTAAATTTTGTAATTTAAACAAGGATTTATCAAAGTCGCAGGGGCTTGTTTAGTTGTTGAGTAGAGTGCACACATGGATGCTTTAGTGATTTTCTGATGGATGACATGCTTAGTGTAAATCCTTGCTTATTAGTATCTTTTATCATGAGAAAGAATGGTGCCCTAGTCTGACACACAAACTACTCTGTGTCTTAGTTTTTCACTGTTGAATCCTTTACTATGCTCTATGCAAAGAAATTTCTCCTGAGCTAAAGTTTTTGAGTGTGTCCATCTATAATAGCTTCTTTTTTTTTTCCCATGACTTTCTCTCTGCAGAGCTTGAGAAACACATTCCTGATCTCCATGTGTTGATTTCGACCCCTTTTCATCCTGCCTATGTCACGGCTGAAAGGATCAAGAAGGCAAAAAATCTACAACTTCTGCTGACAGCTGGAATTGGATCAGATCATGTTGATCTGAAAGCTGCTGCTGCTGCTGGATTGACAGTAGCAGAGGTCACTGGAAGCAATACTGTCTCAGTTGCGGAAGATGAACTGATGCGAATCTTAATTC</genome_strand>
        <mrna_strand>TGGAGTTTATTCTTCTCTCTGTTTTTAGTAAGTACGAAACCGTTTTCTGTAAATCCAAAAAAAATTCCGATGGCGATGAGGCGTGTAGCTTCTACAGCAGCTCGTGCTATTGCTTCACCTTCATCCTTAGTTTTTACCAGAGAACTTCAG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCTTCCCCTGGCCCCAAAAAGATTGTGGGTGTTTTCTACAAAGCAAATGAATATGCTGAAATGAACCCCAACTTTTTGGGCTGTGCAGAAAATGCCTTGGGGATACGTGAATGGTTAGAGTCTAAAGGTCATCAGTACATAGTCACTCCTGACAAAGAAGGACCAGATTGTG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGCTTGAGAAACACATTCCTGATCTCCATGTGTTGATTTCGACCCCTTTTCATCCTGCCTATGTCACGGCTGAAAGGATCAAGAAGGCAAAAAATCTACAACTTCTGCTGACAGCTGGAATTGGATCAGATCATGTTGATCTGAAAGCTGCTGCTGCTGCTGGATTGACAGTAGCAGAGGTCACTGGAAGCAATACTGTCTCAGTTGCGGAAGATGAACTGATGCGAATCTTAATTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0236E02-u8qcS/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E335622" ref_strand="+" ref_description="SGN-E335622 [cTOE-8-I12]">
      <seq>tggagtttattcttctctctgtttttagtaagtacgaaacccttttctgtaaatccaaaaaaaattccgatggcgatgaggcgtgtagcttctacagcagctcgtgctattgcttcaccttcatccttagtttttaccagagaacttcaggcttcccctggccccaaaaagattgtgggtgttttctacaaagcaaatgaatatgctgaaatgaaccccaactttttgggctgtgcagaaaatgccttggggatacgtgaatggttagagtctaaaggtcatcagtacatagtcactcctgacaaagaaggaccagattgtgagcttgagaaacacattcctgatctccatgtgttgatttcgaccccttttcatcctgcctatgtcacggctgaaaggatcaagaaggcaaaaaatctacaacttctgctgacagctggaattggatcagatcatgttgatctgaaagctgctgctgctgctggattgacagtagcagaggtcactggaagcaatactgtctcagttgcggaagatgaactgatgcgaatctta</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0236E02-u8qcS/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0236E02.1" temp_strand="+" temp_description="C02HBa0236E02.1  AC215430.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0236E02 sequenced_by:kribb upload_account_name:korea">
        <position start="65240" stop="68297"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="65540" g_stop="65689" g_length="150"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="150" r_length="150" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="65690" i_stop="66849" i_length="1160">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="66850" g_stop="67021" g_length="172"/>
          <reference_exon_boundary r_type="cDNA" r_start="151" r_stop="322" r_length="172" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="67022" i_stop="67764" i_length="743">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="0.987" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="67765" g_stop="67997" g_length="233"/>
          <reference_exon_boundary r_type="cDNA" r_start="323" r_stop="555" r_length="233" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0236E02.1" gen_strand="+" ref_id="SGN-E335622" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>555</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0236E02.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E335622" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="65540" e_stop="65689"/>
          <exon e_start="66850" e_stop="67021"/>
          <exon e_start="67765" e_stop="67997"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGGAGTTTATTCTTCTCTCTGTTTTTAGTAAGTACGAAACCCTTTTCTGTAAATCCAAAAAAAATTCCGATGGCGATGAGGCGTGTAGCTTCTACAGCAGCTCGTGCTATTGCTTCACCTTCATCCTTAGTTTTTACCAGAGAACTTCAGGTAACTAGCCATTTCTCCTCAATAGCCACTTTTTGTTGCTTTTGTTTTATATGACCTAGTTTTCGCCCTTTGATGAATTATCGGAAACCGGCACGGATCAACTCCGATTTTTCGAGAATCAAGTGAGTTGGAGATTGGAACAGAGGAAACTAAAGGAATTTAACCGTGTAAAGGAAAAAATTAAACACACTGTATTTGGTGCTCTACCCCTCGTCTCTTCTTTTTGGCTTTCCCCGTACTCTACACACCAAATGAAATGGCTCGGATATGAAAGGACTAATAACTTTTCAGTTTTCATTACTGCGTCCTTTTTTAAGCTTTCAGTTTTAATTTGCGTGAATATACCTAATTTTTATTAGGGTAGAGTTATATGTTTCAAATTAAATTGCTACCAAGTTAAATTTAAGAATGTTACATAAATTTAGAGACGGCAAGTTTATATACCAAGAAGGGTACTCCTTCATCCACAGAGAAACGGTGTCCAGTTCGAGTATGGGCGTGAATCTAGATATAGTTAATTCCAATGCAGATATCAGACATCGAGTGAGGAAAAAAAAGATTTTATTAATTTGTTATTTTTAGGTTGCTTTTCCTTTAACTGAAAATCTAACCCGGCAGGACCACAACAGTTCTTTTCCGATCATTACTAATGATACTTGATTTTCACGTGCGATTTCTGATATTTTTATACGGAGTAGGTGAAGAGTGAAATGTTTCACGGGTCTCAAGGACAATGGCAGCAGTGCTTCATTTTTTTTTGCATCTTCACGTGCTATATTATTACTTTGTTTATACTAGTTCGACTTGGAAAATCTTTTCATATTCAGTTGTCTGGGGAATAAATAAGATATTTCTTATTTTTTGATTAAAAAAAGAAGAAGATATTTCTTATTTAAAGAAGTGACAAATTGTACTAACTCATTTACCATGCCTAATATATTATATGTGACAATGATGATTTTTTTTAACTATTAATTGTTAGTTTGGACAAAAATGATCAAAGCAAGTATATTGAATAATGCTTATTTCTTGCCAACTGGTGCATCTACGAGATTATAGGAGTTGGATTATAATTTTAGCACATCCAGCATGCTTATATGACCTTAAAATATTCATGTATATTCTGTCCACTCACCTTTTATTTCTTCATTATTTTACAGGCTTCCCCTGGCCCCAAAAAGATTGTGGGTGTTTTCTACAAAGCAAATGAATATGCTGAAATGAACCCCAACTTTTTGGGCTGTGCAGAAAATGCCTTGGGGATACGTGAATGGTTAGAGTCTAAAGGTCATCAGTACATAGTCACTCCTGACAAAGAAGGACCAGATTGTGGTTAGTTCCTGCTAATCTATAATCTCTCATGTTCTATCCATTATCCCACTGAAGCCTATGCATTTCTAAAGATAATTTCTTTACCCTTCATGCTTGTACAACTAAACACATCTTAAAAGGAGTATTTTTGCATTTAAAACATGCATATATGTGCTGAAGTTTTTTAAAAATATATGGCTCACGTGAGGAGAATATAACGGTCATAGCAGGAACATTTATTTAGATAAAGAGCAAAGCAAAGTAAACAATATTTGCTTTGTTAGTGTTGGTCCTTTGCTGCTAGTGAATTATGATCAGGACATTGTGAGGTAGTTTCTTGCAGGAGGGAAAAAAAGAGTGTATTTTACCTTGATATACAGGTGTGCATTTGCAAAACGTCTATACTTCAGGACTCAGGTGTAAGTTGTACTAGTTTGATAAGACTATGGCTAAATTTTGTAATTTAAACAAGGATTTATCAAAGTCGCAGGGGCTTGTTTAGTTGTTGAGTAGAGTGCACACATGGATGCTTTAGTGATTTTCTGATGGATGACATGCTTAGTGTAAATCCTTGCTTATTAGTATCTTTTATCATGAGAAAGAATGGTGCCCTAGTCTGACACACAAACTACTCTGTGTCTTAGTTTTTCACTGTTGAATCCTTTACTATGCTCTATGCAAAGAAATTTCTCCTGAGCTAAAGTTTTTGAGTGTGTCCATCTATAATAGCTTCTTTTTTTTTTCCCATGACTTTCTCTCTGCAGAGCTTGAGAAACACATTCCTGATCTCCATGTGTTGATTTCGACCCCTTTTCATCCTGCCTATGTCACGGCTGAAAGGATCAAGAAGGCAAAAAATCTACAACTTCTGCTGACAGCTGGAATTGGATCAGATCATGTTGATCTGAAAGCTGCTGCTGCTGCTGGATTGACAGTAGCAGAGGTCACTGGAAGCAATACTGTCTCAGTTGCGGAAGATGAACTGATGCGAATCTTA</genome_strand>
        <mrna_strand>TGGAGTTTATTCTTCTCTCTGTTTTTAGTAAGTACGAAACCCTTTTCTGTAAATCCAAAAAAAATTCCGATGGCGATGAGGCGTGTAGCTTCTACAGCAGCTCGTGCTATTGCTTCACCTTCATCCTTAGTTTTTACCAGAGAACTTCAG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCTTCCCCTGGCCCCAAAAAGATTGTGGGTGTTTTCTACAAAGCAAATGAATATGCTGAAATGAACCCCAACTTTTTGGGCTGTGCAGAAAATGCCTTGGGGATACGTGAATGGTTAGAGTCTAAAGGTCATCAGTACATAGTCACTCCTGACAAAGAAGGACCAGATTGTG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGCTTGAGAAACACATTCCTGATCTCCATGTGTTGATTTCGACCCCTTTTCATCCTGCCTATGTCACGGCTGAAAGGATCAAGAAGGCAAAAAATCTACAACTTCTGCTGACAGCTGGAATTGGATCAGATCATGTTGATCTGAAAGCTGCTGCTGCTGCTGGATTGACAGTAGCAGAGGTCACTGGAAGCAATACTGTCTCAGTTGCGGAAGATGAACTGATGCGAATCTTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0236E02-u8qcS/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E232047" ref_strand="+" ref_description="SGN-E232047 [cLED-7-B9]">
      <seq>tggagtttattcttctctctgtttttagtaagtacgaaacccttttctgtaaatccaaaaaaaattccgatggcgatgaggcgtgtagcttctacagcagctcgtgctattgcttcaccttcatccttagtttttaccagagaacttcaggcttcccctggccccaaaaagattgtgggtgttttctacaaagcaaatgaatatgctgaaatgaaccccaactttttgggctgtgcagaaaatgccttggggatacgtgaatggttagagtctaaaggtcatcagtacatagtcactcctgacaaagaaggaccagattgtgagcttgagaaacacattcctgatctccatgtgttgatttcgaccccttttcatcctgcctatgtcacggctgaaaggatcaagaaggcaaaaaatctacaacttctgctgacagctggaattggatcagatcatgttgatctgaaagctgctgctgctgctggattgacagtagcagaggtcactggaagcaatactgtctcagttgcggaagatgaactgatgcga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0236E02-u8qcS/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0236E02.1" temp_strand="+" temp_description="C02HBa0236E02.1  AC215430.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0236E02 sequenced_by:kribb upload_account_name:korea">
        <position start="65240" stop="68291"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="65540" g_stop="65689" g_length="150"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="150" r_length="150" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="65690" i_stop="66849" i_length="1160">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="66850" g_stop="67021" g_length="172"/>
          <reference_exon_boundary r_type="cDNA" r_start="151" r_stop="322" r_length="172" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="67022" i_stop="67764" i_length="743">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="0.987" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="67765" g_stop="67991" g_length="227"/>
          <reference_exon_boundary r_type="cDNA" r_start="323" r_stop="549" r_length="227" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0236E02.1" gen_strand="+" ref_id="SGN-E232047" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>549</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0236E02.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E232047" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="65540" e_stop="65689"/>
          <exon e_start="66850" e_stop="67021"/>
          <exon e_start="67765" e_stop="67991"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGGAGTTTATTCTTCTCTCTGTTTTTAGTAAGTACGAAACCCTTTTCTGTAAATCCAAAAAAAATTCCGATGGCGATGAGGCGTGTAGCTTCTACAGCAGCTCGTGCTATTGCTTCACCTTCATCCTTAGTTTTTACCAGAGAACTTCAGGTAACTAGCCATTTCTCCTCAATAGCCACTTTTTGTTGCTTTTGTTTTATATGACCTAGTTTTCGCCCTTTGATGAATTATCGGAAACCGGCACGGATCAACTCCGATTTTTCGAGAATCAAGTGAGTTGGAGATTGGAACAGAGGAAACTAAAGGAATTTAACCGTGTAAAGGAAAAAATTAAACACACTGTATTTGGTGCTCTACCCCTCGTCTCTTCTTTTTGGCTTTCCCCGTACTCTACACACCAAATGAAATGGCTCGGATATGAAAGGACTAATAACTTTTCAGTTTTCATTACTGCGTCCTTTTTTAAGCTTTCAGTTTTAATTTGCGTGAATATACCTAATTTTTATTAGGGTAGAGTTATATGTTTCAAATTAAATTGCTACCAAGTTAAATTTAAGAATGTTACATAAATTTAGAGACGGCAAGTTTATATACCAAGAAGGGTACTCCTTCATCCACAGAGAAACGGTGTCCAGTTCGAGTATGGGCGTGAATCTAGATATAGTTAATTCCAATGCAGATATCAGACATCGAGTGAGGAAAAAAAAGATTTTATTAATTTGTTATTTTTAGGTTGCTTTTCCTTTAACTGAAAATCTAACCCGGCAGGACCACAACAGTTCTTTTCCGATCATTACTAATGATACTTGATTTTCACGTGCGATTTCTGATATTTTTATACGGAGTAGGTGAAGAGTGAAATGTTTCACGGGTCTCAAGGACAATGGCAGCAGTGCTTCATTTTTTTTTGCATCTTCACGTGCTATATTATTACTTTGTTTATACTAGTTCGACTTGGAAAATCTTTTCATATTCAGTTGTCTGGGGAATAAATAAGATATTTCTTATTTTTTGATTAAAAAAAGAAGAAGATATTTCTTATTTAAAGAAGTGACAAATTGTACTAACTCATTTACCATGCCTAATATATTATATGTGACAATGATGATTTTTTTTAACTATTAATTGTTAGTTTGGACAAAAATGATCAAAGCAAGTATATTGAATAATGCTTATTTCTTGCCAACTGGTGCATCTACGAGATTATAGGAGTTGGATTATAATTTTAGCACATCCAGCATGCTTATATGACCTTAAAATATTCATGTATATTCTGTCCACTCACCTTTTATTTCTTCATTATTTTACAGGCTTCCCCTGGCCCCAAAAAGATTGTGGGTGTTTTCTACAAAGCAAATGAATATGCTGAAATGAACCCCAACTTTTTGGGCTGTGCAGAAAATGCCTTGGGGATACGTGAATGGTTAGAGTCTAAAGGTCATCAGTACATAGTCACTCCTGACAAAGAAGGACCAGATTGTGGTTAGTTCCTGCTAATCTATAATCTCTCATGTTCTATCCATTATCCCACTGAAGCCTATGCATTTCTAAAGATAATTTCTTTACCCTTCATGCTTGTACAACTAAACACATCTTAAAAGGAGTATTTTTGCATTTAAAACATGCATATATGTGCTGAAGTTTTTTAAAAATATATGGCTCACGTGAGGAGAATATAACGGTCATAGCAGGAACATTTATTTAGATAAAGAGCAAAGCAAAGTAAACAATATTTGCTTTGTTAGTGTTGGTCCTTTGCTGCTAGTGAATTATGATCAGGACATTGTGAGGTAGTTTCTTGCAGGAGGGAAAAAAAGAGTGTATTTTACCTTGATATACAGGTGTGCATTTGCAAAACGTCTATACTTCAGGACTCAGGTGTAAGTTGTACTAGTTTGATAAGACTATGGCTAAATTTTGTAATTTAAACAAGGATTTATCAAAGTCGCAGGGGCTTGTTTAGTTGTTGAGTAGAGTGCACACATGGATGCTTTAGTGATTTTCTGATGGATGACATGCTTAGTGTAAATCCTTGCTTATTAGTATCTTTTATCATGAGAAAGAATGGTGCCCTAGTCTGACACACAAACTACTCTGTGTCTTAGTTTTTCACTGTTGAATCCTTTACTATGCTCTATGCAAAGAAATTTCTCCTGAGCTAAAGTTTTTGAGTGTGTCCATCTATAATAGCTTCTTTTTTTTTTCCCATGACTTTCTCTCTGCAGAGCTTGAGAAACACATTCCTGATCTCCATGTGTTGATTTCGACCCCTTTTCATCCTGCCTATGTCACGGCTGAAAGGATCAAGAAGGCAAAAAATCTACAACTTCTGCTGACAGCTGGAATTGGATCAGATCATGTTGATCTGAAAGCTGCTGCTGCTGCTGGATTGACAGTAGCAGAGGTCACTGGAAGCAATACTGTCTCAGTTGCGGAAGATGAACTGATGCGA</genome_strand>
        <mrna_strand>TGGAGTTTATTCTTCTCTCTGTTTTTAGTAAGTACGAAACCCTTTTCTGTAAATCCAAAAAAAATTCCGATGGCGATGAGGCGTGTAGCTTCTACAGCAGCTCGTGCTATTGCTTCACCTTCATCCTTAGTTTTTACCAGAGAACTTCAG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCTTCCCCTGGCCCCAAAAAGATTGTGGGTGTTTTCTACAAAGCAAATGAATATGCTGAAATGAACCCCAACTTTTTGGGCTGTGCAGAAAATGCCTTGGGGATACGTGAATGGTTAGAGTCTAAAGGTCATCAGTACATAGTCACTCCTGACAAAGAAGGACCAGATTGTG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGCTTGAGAAACACATTCCTGATCTCCATGTGTTGATTTCGACCCCTTTTCATCCTGCCTATGTCACGGCTGAAAGGATCAAGAAGGCAAAAAATCTACAACTTCTGCTGACAGCTGGAATTGGATCAGATCATGTTGATCTGAAAGCTGCTGCTGCTGCTGGATTGACAGTAGCAGAGGTCACTGGAAGCAATACTGTCTCAGTTGCGGAAGATGAACTGATGCGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0236E02-u8qcS/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E484045" ref_strand="+" ref_description="SGN-E484045 [cSTE-11-L6]">
      <seq>tggagggtctaggtctctctgtttttaccaagtacaaaaccctttgctgtaaatccaaaaaattccgatggcgatgagtcgtgtagcttctacagcagctcgtgctattacttcaccttcatccttagtttttaccagagaacttcaggcttcccctggccccaaaaagattgtgggtgttttctacaaagcaaatgaatatgctgaaatgaaccccaactttttgggctgtgcagaaaatgccttggggatacgtgaatggctagaatctaaaggtcatcagcacatagtcactcctgacaaagaaggaccggattgtgagcttgagaaacacattgctgatctccatgtgttgatttcgaccccttttcatcctgcctatgtcacggctgataggatcaagaaggcaaaaaatctacaactactgctgacagctggaattggatcagatcatgttgatctgaaagctgctgctgctgctggattgacagtaacagaggtcactggaagcaatactgtctcaattgcggaagatgaactgatg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0236E02-u8qcS/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0236E02.1" temp_strand="+" temp_description="C02HBa0236E02.1  AC215430.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0236E02 sequenced_by:kribb upload_account_name:korea">
        <position start="65253" stop="68288"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="65540" g_stop="65689" g_length="150"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="148" r_length="148" r_score="0.907"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="65690" i_stop="66849" i_length="1160">
            <donor d_prob="1.000" d_score="0.98"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="66850" g_stop="67021" g_length="172"/>
          <reference_exon_boundary r_type="cDNA" r_start="149" r_stop="320" r_length="172" r_score="0.977"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="67022" i_stop="67764" i_length="743">
            <donor d_prob="0.994" d_score="0.96"/>
            <acceptor a_prob="0.987" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="67765" g_stop="67988" g_length="224"/>
          <reference_exon_boundary r_type="cDNA" r_start="321" r_stop="544" r_length="224" r_score="0.978"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0236E02.1" gen_strand="+" ref_id="SGN-E484045" ref_strand="+">
        <total_alignment_score>0.958</total_alignment_score>
        <cumulative_length_of_scored_exons>546</cumulative_length_of_scored_exons>
        <coverage percentage="1.004" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0236E02.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E484045" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="65540" e_stop="65689"/>
          <exon e_start="66850" e_stop="67021"/>
          <exon e_start="67765" e_stop="67988"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGGAGTTTATTCTTCTCTCTGTTTTTAGTAAGTACGAAACCCTTTTCTGTAAATCCAAAAAAAATTCCGATGGCGATGAGGCGTGTAGCTTCTACAGCAGCTCGTGCTATTGCTTCACCTTCATCCTTAGTTTTTACCAGAGAACTTCAGGTAACTAGCCATTTCTCCTCAATAGCCACTTTTTGTTGCTTTTGTTTTATATGACCTAGTTTTCGCCCTTTGATGAATTATCGGAAACCGGCACGGATCAACTCCGATTTTTCGAGAATCAAGTGAGTTGGAGATTGGAACAGAGGAAACTAAAGGAATTTAACCGTGTAAAGGAAAAAATTAAACACACTGTATTTGGTGCTCTACCCCTCGTCTCTTCTTTTTGGCTTTCCCCGTACTCTACACACCAAATGAAATGGCTCGGATATGAAAGGACTAATAACTTTTCAGTTTTCATTACTGCGTCCTTTTTTAAGCTTTCAGTTTTAATTTGCGTGAATATACCTAATTTTTATTAGGGTAGAGTTATATGTTTCAAATTAAATTGCTACCAAGTTAAATTTAAGAATGTTACATAAATTTAGAGACGGCAAGTTTATATACCAAGAAGGGTACTCCTTCATCCACAGAGAAACGGTGTCCAGTTCGAGTATGGGCGTGAATCTAGATATAGTTAATTCCAATGCAGATATCAGACATCGAGTGAGGAAAAAAAAGATTTTATTAATTTGTTATTTTTAGGTTGCTTTTCCTTTAACTGAAAATCTAACCCGGCAGGACCACAACAGTTCTTTTCCGATCATTACTAATGATACTTGATTTTCACGTGCGATTTCTGATATTTTTATACGGAGTAGGTGAAGAGTGAAATGTTTCACGGGTCTCAAGGACAATGGCAGCAGTGCTTCATTTTTTTTTGCATCTTCACGTGCTATATTATTACTTTGTTTATACTAGTTCGACTTGGAAAATCTTTTCATATTCAGTTGTCTGGGGAATAAATAAGATATTTCTTATTTTTTGATTAAAAAAAGAAGAAGATATTTCTTATTTAAAGAAGTGACAAATTGTACTAACTCATTTACCATGCCTAATATATTATATGTGACAATGATGATTTTTTTTAACTATTAATTGTTAGTTTGGACAAAAATGATCAAAGCAAGTATATTGAATAATGCTTATTTCTTGCCAACTGGTGCATCTACGAGATTATAGGAGTTGGATTATAATTTTAGCACATCCAGCATGCTTATATGACCTTAAAATATTCATGTATATTCTGTCCACTCACCTTTTATTTCTTCATTATTTTACAGGCTTCCCCTGGCCCCAAAAAGATTGTGGGTGTTTTCTACAAAGCAAATGAATATGCTGAAATGAACCCCAACTTTTTGGGCTGTGCAGAAAATGCCTTGGGGATACGTGAATGGTTAGAGTCTAAAGGTCATCAGTACATAGTCACTCCTGACAAAGAAGGACCAGATTGTGGTTAGTTCCTGCTAATCTATAATCTCTCATGTTCTATCCATTATCCCACTGAAGCCTATGCATTTCTAAAGATAATTTCTTTACCCTTCATGCTTGTACAACTAAACACATCTTAAAAGGAGTATTTTTGCATTTAAAACATGCATATATGTGCTGAAGTTTTTTAAAAATATATGGCTCACGTGAGGAGAATATAACGGTCATAGCAGGAACATTTATTTAGATAAAGAGCAAAGCAAAGTAAACAATATTTGCTTTGTTAGTGTTGGTCCTTTGCTGCTAGTGAATTATGATCAGGACATTGTGAGGTAGTTTCTTGCAGGAGGGAAAAAAAGAGTGTATTTTACCTTGATATACAGGTGTGCATTTGCAAAACGTCTATACTTCAGGACTCAGGTGTAAGTTGTACTAGTTTGATAAGACTATGGCTAAATTTTGTAATTTAAACAAGGATTTATCAAAGTCGCAGGGGCTTGTTTAGTTGTTGAGTAGAGTGCACACATGGATGCTTTAGTGATTTTCTGATGGATGACATGCTTAGTGTAAATCCTTGCTTATTAGTATCTTTTATCATGAGAAAGAATGGTGCCCTAGTCTGACACACAAACTACTCTGTGTCTTAGTTTTTCACTGTTGAATCCTTTACTATGCTCTATGCAAAGAAATTTCTCCTGAGCTAAAGTTTTTGAGTGTGTCCATCTATAATAGCTTCTTTTTTTTTTCCCATGACTTTCTCTCTGCAGAGCTTGAGAAACACATTCCTGATCTCCATGTGTTGATTTCGACCCCTTTTCATCCTGCCTATGTCACGGCTGAAAGGATCAAGAAGGCAAAAAATCTACAACTTCTGCTGACAGCTGGAATTGGATCAGATCATGTTGATCTGAAAGCTGCTGCTGCTGCTGGATTGACAGTAGCAGAGGTCACTGGAAGCAATACTGTCTCAGTTGCGGAAGATGAACTGATG</genome_strand>
        <mrna_strand>TGGAGGGTCTAGGTCTCTCTGTTTTTACCAAGTACAAAACCCTTTGCTGTAAATCC--AAAAAATTCCGATGGCGATGAGTCGTGTAGCTTCTACAGCAGCTCGTGCTATTACTTCACCTTCATCCTTAGTTTTTACCAGAGAACTTCAG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCTTCCCCTGGCCCCAAAAAGATTGTGGGTGTTTTCTACAAAGCAAATGAATATGCTGAAATGAACCCCAACTTTTTGGGCTGTGCAGAAAATGCCTTGGGGATACGTGAATGGCTAGAATCTAAAGGTCATCAGCACATAGTCACTCCTGACAAAGAAGGACCGGATTGTG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGCTTGAGAAACACATTGCTGATCTCCATGTGTTGATTTCGACCCCTTTTCATCCTGCCTATGTCACGGCTGATAGGATCAAGAAGGCAAAAAATCTACAACTACTGCTGACAGCTGGAATTGGATCAGATCATGTTGATCTGAAAGCTGCTGCTGCTGCTGGATTGACAGTAACAGAGGTCACTGGAAGCAATACTGTCTCAATTGCGGAAGATGAACTGATG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0236E02-u8qcS/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E284248" ref_strand="+" ref_description="SGN-E284248 [cLER-16-O22]">
      <seq>tggagtttattcttctctctgtttttagtaagtacgaaacccttttctgtaaatccaaaaaaaattccgatggcgatgaggcgtgtagcttctacagcagctcgtgctattgcttcaccttcatccttagtttttaccagagaacttcaggcttcccctggccccaaaaagattgtgggtgttttctacaaagcaaatgaatatgctgaaatgaaccccaactttttgggctgtgcagaaaatgccttggggatacgtgaatggttagagtctaaaggtcatcagtacatagtcactcctgacaaagaaggaccagattgtgagcttgagaaacacattcctgatctccatgtgttgatttcgaccccttttcatcctgcctatgtcacggctgaaaggatcaagaaggcaaaaaatctacaacttctgctgacagctggaattggatcagatcatgttgatctgaaagctgctgctgctgctggattgaca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0236E02-u8qcS/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0236E02.1" temp_strand="+" temp_description="C02HBa0236E02.1  AC215430.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0236E02 sequenced_by:kribb upload_account_name:korea">
        <position start="65240" stop="68234"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="65540" g_stop="65689" g_length="150"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="150" r_length="150" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="65690" i_stop="66849" i_length="1160">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="66850" g_stop="67021" g_length="172"/>
          <reference_exon_boundary r_type="cDNA" r_start="151" r_stop="322" r_length="172" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="67022" i_stop="67764" i_length="743">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="0.987" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="67765" g_stop="67934" g_length="170"/>
          <reference_exon_boundary r_type="cDNA" r_start="323" r_stop="492" r_length="170" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0236E02.1" gen_strand="+" ref_id="SGN-E284248" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>492</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0236E02.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E284248" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="65540" e_stop="65689"/>
          <exon e_start="66850" e_stop="67021"/>
          <exon e_start="67765" e_stop="67934"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGGAGTTTATTCTTCTCTCTGTTTTTAGTAAGTACGAAACCCTTTTCTGTAAATCCAAAAAAAATTCCGATGGCGATGAGGCGTGTAGCTTCTACAGCAGCTCGTGCTATTGCTTCACCTTCATCCTTAGTTTTTACCAGAGAACTTCAGGTAACTAGCCATTTCTCCTCAATAGCCACTTTTTGTTGCTTTTGTTTTATATGACCTAGTTTTCGCCCTTTGATGAATTATCGGAAACCGGCACGGATCAACTCCGATTTTTCGAGAATCAAGTGAGTTGGAGATTGGAACAGAGGAAACTAAAGGAATTTAACCGTGTAAAGGAAAAAATTAAACACACTGTATTTGGTGCTCTACCCCTCGTCTCTTCTTTTTGGCTTTCCCCGTACTCTACACACCAAATGAAATGGCTCGGATATGAAAGGACTAATAACTTTTCAGTTTTCATTACTGCGTCCTTTTTTAAGCTTTCAGTTTTAATTTGCGTGAATATACCTAATTTTTATTAGGGTAGAGTTATATGTTTCAAATTAAATTGCTACCAAGTTAAATTTAAGAATGTTACATAAATTTAGAGACGGCAAGTTTATATACCAAGAAGGGTACTCCTTCATCCACAGAGAAACGGTGTCCAGTTCGAGTATGGGCGTGAATCTAGATATAGTTAATTCCAATGCAGATATCAGACATCGAGTGAGGAAAAAAAAGATTTTATTAATTTGTTATTTTTAGGTTGCTTTTCCTTTAACTGAAAATCTAACCCGGCAGGACCACAACAGTTCTTTTCCGATCATTACTAATGATACTTGATTTTCACGTGCGATTTCTGATATTTTTATACGGAGTAGGTGAAGAGTGAAATGTTTCACGGGTCTCAAGGACAATGGCAGCAGTGCTTCATTTTTTTTTGCATCTTCACGTGCTATATTATTACTTTGTTTATACTAGTTCGACTTGGAAAATCTTTTCATATTCAGTTGTCTGGGGAATAAATAAGATATTTCTTATTTTTTGATTAAAAAAAGAAGAAGATATTTCTTATTTAAAGAAGTGACAAATTGTACTAACTCATTTACCATGCCTAATATATTATATGTGACAATGATGATTTTTTTTAACTATTAATTGTTAGTTTGGACAAAAATGATCAAAGCAAGTATATTGAATAATGCTTATTTCTTGCCAACTGGTGCATCTACGAGATTATAGGAGTTGGATTATAATTTTAGCACATCCAGCATGCTTATATGACCTTAAAATATTCATGTATATTCTGTCCACTCACCTTTTATTTCTTCATTATTTTACAGGCTTCCCCTGGCCCCAAAAAGATTGTGGGTGTTTTCTACAAAGCAAATGAATATGCTGAAATGAACCCCAACTTTTTGGGCTGTGCAGAAAATGCCTTGGGGATACGTGAATGGTTAGAGTCTAAAGGTCATCAGTACATAGTCACTCCTGACAAAGAAGGACCAGATTGTGGTTAGTTCCTGCTAATCTATAATCTCTCATGTTCTATCCATTATCCCACTGAAGCCTATGCATTTCTAAAGATAATTTCTTTACCCTTCATGCTTGTACAACTAAACACATCTTAAAAGGAGTATTTTTGCATTTAAAACATGCATATATGTGCTGAAGTTTTTTAAAAATATATGGCTCACGTGAGGAGAATATAACGGTCATAGCAGGAACATTTATTTAGATAAAGAGCAAAGCAAAGTAAACAATATTTGCTTTGTTAGTGTTGGTCCTTTGCTGCTAGTGAATTATGATCAGGACATTGTGAGGTAGTTTCTTGCAGGAGGGAAAAAAAGAGTGTATTTTACCTTGATATACAGGTGTGCATTTGCAAAACGTCTATACTTCAGGACTCAGGTGTAAGTTGTACTAGTTTGATAAGACTATGGCTAAATTTTGTAATTTAAACAAGGATTTATCAAAGTCGCAGGGGCTTGTTTAGTTGTTGAGTAGAGTGCACACATGGATGCTTTAGTGATTTTCTGATGGATGACATGCTTAGTGTAAATCCTTGCTTATTAGTATCTTTTATCATGAGAAAGAATGGTGCCCTAGTCTGACACACAAACTACTCTGTGTCTTAGTTTTTCACTGTTGAATCCTTTACTATGCTCTATGCAAAGAAATTTCTCCTGAGCTAAAGTTTTTGAGTGTGTCCATCTATAATAGCTTCTTTTTTTTTTCCCATGACTTTCTCTCTGCAGAGCTTGAGAAACACATTCCTGATCTCCATGTGTTGATTTCGACCCCTTTTCATCCTGCCTATGTCACGGCTGAAAGGATCAAGAAGGCAAAAAATCTACAACTTCTGCTGACAGCTGGAATTGGATCAGATCATGTTGATCTGAAAGCTGCTGCTGCTGCTGGATTGACA</genome_strand>
        <mrna_strand>TGGAGTTTATTCTTCTCTCTGTTTTTAGTAAGTACGAAACCCTTTTCTGTAAATCCAAAAAAAATTCCGATGGCGATGAGGCGTGTAGCTTCTACAGCAGCTCGTGCTATTGCTTCACCTTCATCCTTAGTTTTTACCAGAGAACTTCAG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCTTCCCCTGGCCCCAAAAAGATTGTGGGTGTTTTCTACAAAGCAAATGAATATGCTGAAATGAACCCCAACTTTTTGGGCTGTGCAGAAAATGCCTTGGGGATACGTGAATGGTTAGAGTCTAAAGGTCATCAGTACATAGTCACTCCTGACAAAGAAGGACCAGATTGTG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGCTTGAGAAACACATTCCTGATCTCCATGTGTTGATTTCGACCCCTTTTCATCCTGCCTATGTCACGGCTGAAAGGATCAAGAAGGCAAAAAATCTACAACTTCTGCTGACAGCTGGAATTGGATCAGATCATGTTGATCTGAAAGCTGCTGCTGCTGCTGGATTGACA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0236E02-u8qcS/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E317598" ref_strand="+" ref_description="SGN-E317598 [cTOB-8-K17]">
      <seq>tggagtttattcttctctctgtttgtagtaagtacgaaacccttttctgtaaatccaaaaaaaattccgatggcgatgaggcgtgtagcttctacagcagctcgtgctattgcttcaccttcatccttagtttttaccagagaacttcaggcttcccctggccccaaaaagattgtgggtgttttctacaaagcaaatgaatatgctgaaatgaaccccaactttttgggctgtgcagaaaatgccttggggatacgtgaatggttagagtctaaaggtcatcagtacatagtcactcctgacaaagaaggaccagattgtgagcttgagaaacacattcctgatctccatgtgttgattccgaccccttttcatcctgcctatgtcacggctgaaaggatcaagaaggcagaaaatctacaacttctgctgacagctggaattggatcagatcatgttgatctgaaagctgctgctgct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0236E02-u8qcS/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0236E02.1" temp_strand="+" temp_description="C02HBa0236E02.1  AC215430.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0236E02 sequenced_by:kribb upload_account_name:korea">
        <position start="65240" stop="68222"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="65540" g_stop="65689" g_length="150"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="150" r_length="150" r_score="0.993"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="65690" i_stop="66849" i_length="1160">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="66850" g_stop="67021" g_length="172"/>
          <reference_exon_boundary r_type="cDNA" r_start="151" r_stop="322" r_length="172" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="67022" i_stop="67764" i_length="743">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="0.987" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="67765" g_stop="67922" g_length="158"/>
          <reference_exon_boundary r_type="cDNA" r_start="323" r_stop="480" r_length="158" r_score="0.987"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0236E02.1" gen_strand="+" ref_id="SGN-E317598" ref_strand="+">
        <total_alignment_score>0.994</total_alignment_score>
        <cumulative_length_of_scored_exons>480</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0236E02.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E317598" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="65540" e_stop="65689"/>
          <exon e_start="66850" e_stop="67021"/>
          <exon e_start="67765" e_stop="67922"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGGAGTTTATTCTTCTCTCTGTTTTTAGTAAGTACGAAACCCTTTTCTGTAAATCCAAAAAAAATTCCGATGGCGATGAGGCGTGTAGCTTCTACAGCAGCTCGTGCTATTGCTTCACCTTCATCCTTAGTTTTTACCAGAGAACTTCAGGTAACTAGCCATTTCTCCTCAATAGCCACTTTTTGTTGCTTTTGTTTTATATGACCTAGTTTTCGCCCTTTGATGAATTATCGGAAACCGGCACGGATCAACTCCGATTTTTCGAGAATCAAGTGAGTTGGAGATTGGAACAGAGGAAACTAAAGGAATTTAACCGTGTAAAGGAAAAAATTAAACACACTGTATTTGGTGCTCTACCCCTCGTCTCTTCTTTTTGGCTTTCCCCGTACTCTACACACCAAATGAAATGGCTCGGATATGAAAGGACTAATAACTTTTCAGTTTTCATTACTGCGTCCTTTTTTAAGCTTTCAGTTTTAATTTGCGTGAATATACCTAATTTTTATTAGGGTAGAGTTATATGTTTCAAATTAAATTGCTACCAAGTTAAATTTAAGAATGTTACATAAATTTAGAGACGGCAAGTTTATATACCAAGAAGGGTACTCCTTCATCCACAGAGAAACGGTGTCCAGTTCGAGTATGGGCGTGAATCTAGATATAGTTAATTCCAATGCAGATATCAGACATCGAGTGAGGAAAAAAAAGATTTTATTAATTTGTTATTTTTAGGTTGCTTTTCCTTTAACTGAAAATCTAACCCGGCAGGACCACAACAGTTCTTTTCCGATCATTACTAATGATACTTGATTTTCACGTGCGATTTCTGATATTTTTATACGGAGTAGGTGAAGAGTGAAATGTTTCACGGGTCTCAAGGACAATGGCAGCAGTGCTTCATTTTTTTTTGCATCTTCACGTGCTATATTATTACTTTGTTTATACTAGTTCGACTTGGAAAATCTTTTCATATTCAGTTGTCTGGGGAATAAATAAGATATTTCTTATTTTTTGATTAAAAAAAGAAGAAGATATTTCTTATTTAAAGAAGTGACAAATTGTACTAACTCATTTACCATGCCTAATATATTATATGTGACAATGATGATTTTTTTTAACTATTAATTGTTAGTTTGGACAAAAATGATCAAAGCAAGTATATTGAATAATGCTTATTTCTTGCCAACTGGTGCATCTACGAGATTATAGGAGTTGGATTATAATTTTAGCACATCCAGCATGCTTATATGACCTTAAAATATTCATGTATATTCTGTCCACTCACCTTTTATTTCTTCATTATTTTACAGGCTTCCCCTGGCCCCAAAAAGATTGTGGGTGTTTTCTACAAAGCAAATGAATATGCTGAAATGAACCCCAACTTTTTGGGCTGTGCAGAAAATGCCTTGGGGATACGTGAATGGTTAGAGTCTAAAGGTCATCAGTACATAGTCACTCCTGACAAAGAAGGACCAGATTGTGGTTAGTTCCTGCTAATCTATAATCTCTCATGTTCTATCCATTATCCCACTGAAGCCTATGCATTTCTAAAGATAATTTCTTTACCCTTCATGCTTGTACAACTAAACACATCTTAAAAGGAGTATTTTTGCATTTAAAACATGCATATATGTGCTGAAGTTTTTTAAAAATATATGGCTCACGTGAGGAGAATATAACGGTCATAGCAGGAACATTTATTTAGATAAAGAGCAAAGCAAAGTAAACAATATTTGCTTTGTTAGTGTTGGTCCTTTGCTGCTAGTGAATTATGATCAGGACATTGTGAGGTAGTTTCTTGCAGGAGGGAAAAAAAGAGTGTATTTTACCTTGATATACAGGTGTGCATTTGCAAAACGTCTATACTTCAGGACTCAGGTGTAAGTTGTACTAGTTTGATAAGACTATGGCTAAATTTTGTAATTTAAACAAGGATTTATCAAAGTCGCAGGGGCTTGTTTAGTTGTTGAGTAGAGTGCACACATGGATGCTTTAGTGATTTTCTGATGGATGACATGCTTAGTGTAAATCCTTGCTTATTAGTATCTTTTATCATGAGAAAGAATGGTGCCCTAGTCTGACACACAAACTACTCTGTGTCTTAGTTTTTCACTGTTGAATCCTTTACTATGCTCTATGCAAAGAAATTTCTCCTGAGCTAAAGTTTTTGAGTGTGTCCATCTATAATAGCTTCTTTTTTTTTTCCCATGACTTTCTCTCTGCAGAGCTTGAGAAACACATTCCTGATCTCCATGTGTTGATTTCGACCCCTTTTCATCCTGCCTATGTCACGGCTGAAAGGATCAAGAAGGCAAAAAATCTACAACTTCTGCTGACAGCTGGAATTGGATCAGATCATGTTGATCTGAAAGCTGCTGCTGCT</genome_strand>
        <mrna_strand>TGGAGTTTATTCTTCTCTCTGTTTGTAGTAAGTACGAAACCCTTTTCTGTAAATCCAAAAAAAATTCCGATGGCGATGAGGCGTGTAGCTTCTACAGCAGCTCGTGCTATTGCTTCACCTTCATCCTTAGTTTTTACCAGAGAACTTCAG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCTTCCCCTGGCCCCAAAAAGATTGTGGGTGTTTTCTACAAAGCAAATGAATATGCTGAAATGAACCCCAACTTTTTGGGCTGTGCAGAAAATGCCTTGGGGATACGTGAATGGTTAGAGTCTAAAGGTCATCAGTACATAGTCACTCCTGACAAAGAAGGACCAGATTGTG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGCTTGAGAAACACATTCCTGATCTCCATGTGTTGATTCCGACCCCTTTTCATCCTGCCTATGTCACGGCTGAAAGGATCAAGAAGGCAGAAAATCTACAACTTCTGCTGACAGCTGGAATTGGATCAGATCATGTTGATCTGAAAGCTGCTGCTGCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0236E02-u8qcS/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E336580" ref_strand="+" ref_description="SGN-E336580 [cTOE-4-E6]">
      <seq>tggagtttattcttctctctgtttttagtaagtacgaaacccttttctgtaaatccaaaaaaaattccgatggcgatgaggcgtgtagcttctacagcagctcgtgctattgnnacaccttcatccttagtttttaccagagaacttcaggcttcccctggccccaaaaagattgtgggtgttttctacaaagcaaatgaatatgctgaaatgaaccccaactttttgggctgtgcagaaaatgccttggggatacgtgaatggttagagtctaaaggtcatcagtacatattcactcctgacaaagaaggaccagattgtgagcttgagaaacacattcctgatctccatgtgttgatttcgaccccttttcatcctgcctatgtcacggctgaaaggatcaagaaggcaaaaaatctac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0236E02-u8qcS/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0236E02.1" temp_strand="+" temp_description="C02HBa0236E02.1  AC215430.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0236E02 sequenced_by:kribb upload_account_name:korea">
        <position start="65240" stop="68163"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="65540" g_stop="65689" g_length="150"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="150" r_length="150" r_score="0.980"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="65690" i_stop="66849" i_length="1160">
            <donor d_prob="1.000" d_score="0.94"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="66850" g_stop="67021" g_length="172"/>
          <reference_exon_boundary r_type="cDNA" r_start="151" r_stop="322" r_length="172" r_score="0.994"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="67022" i_stop="67764" i_length="743">
            <donor d_prob="0.994" d_score="0.98"/>
            <acceptor a_prob="0.987" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="67765" g_stop="67863" g_length="99"/>
          <reference_exon_boundary r_type="cDNA" r_start="323" r_stop="421" r_length="99" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0236E02.1" gen_strand="+" ref_id="SGN-E336580" ref_strand="+">
        <total_alignment_score>0.990</total_alignment_score>
        <cumulative_length_of_scored_exons>421</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0236E02.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E336580" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="65540" e_stop="65689"/>
          <exon e_start="66850" e_stop="67021"/>
          <exon e_start="67765" e_stop="67863"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGGAGTTTATTCTTCTCTCTGTTTTTAGTAAGTACGAAACCCTTTTCTGTAAATCCAAAAAAAATTCCGATGGCGATGAGGCGTGTAGCTTCTACAGCAGCTCGTGCTATTGCTTCACCTTCATCCTTAGTTTTTACCAGAGAACTTCAGGTAACTAGCCATTTCTCCTCAATAGCCACTTTTTGTTGCTTTTGTTTTATATGACCTAGTTTTCGCCCTTTGATGAATTATCGGAAACCGGCACGGATCAACTCCGATTTTTCGAGAATCAAGTGAGTTGGAGATTGGAACAGAGGAAACTAAAGGAATTTAACCGTGTAAAGGAAAAAATTAAACACACTGTATTTGGTGCTCTACCCCTCGTCTCTTCTTTTTGGCTTTCCCCGTACTCTACACACCAAATGAAATGGCTCGGATATGAAAGGACTAATAACTTTTCAGTTTTCATTACTGCGTCCTTTTTTAAGCTTTCAGTTTTAATTTGCGTGAATATACCTAATTTTTATTAGGGTAGAGTTATATGTTTCAAATTAAATTGCTACCAAGTTAAATTTAAGAATGTTACATAAATTTAGAGACGGCAAGTTTATATACCAAGAAGGGTACTCCTTCATCCACAGAGAAACGGTGTCCAGTTCGAGTATGGGCGTGAATCTAGATATAGTTAATTCCAATGCAGATATCAGACATCGAGTGAGGAAAAAAAAGATTTTATTAATTTGTTATTTTTAGGTTGCTTTTCCTTTAACTGAAAATCTAACCCGGCAGGACCACAACAGTTCTTTTCCGATCATTACTAATGATACTTGATTTTCACGTGCGATTTCTGATATTTTTATACGGAGTAGGTGAAGAGTGAAATGTTTCACGGGTCTCAAGGACAATGGCAGCAGTGCTTCATTTTTTTTTGCATCTTCACGTGCTATATTATTACTTTGTTTATACTAGTTCGACTTGGAAAATCTTTTCATATTCAGTTGTCTGGGGAATAAATAAGATATTTCTTATTTTTTGATTAAAAAAAGAAGAAGATATTTCTTATTTAAAGAAGTGACAAATTGTACTAACTCATTTACCATGCCTAATATATTATATGTGACAATGATGATTTTTTTTAACTATTAATTGTTAGTTTGGACAAAAATGATCAAAGCAAGTATATTGAATAATGCTTATTTCTTGCCAACTGGTGCATCTACGAGATTATAGGAGTTGGATTATAATTTTAGCACATCCAGCATGCTTATATGACCTTAAAATATTCATGTATATTCTGTCCACTCACCTTTTATTTCTTCATTATTTTACAGGCTTCCCCTGGCCCCAAAAAGATTGTGGGTGTTTTCTACAAAGCAAATGAATATGCTGAAATGAACCCCAACTTTTTGGGCTGTGCAGAAAATGCCTTGGGGATACGTGAATGGTTAGAGTCTAAAGGTCATCAGTACATAGTCACTCCTGACAAAGAAGGACCAGATTGTGGTTAGTTCCTGCTAATCTATAATCTCTCATGTTCTATCCATTATCCCACTGAAGCCTATGCATTTCTAAAGATAATTTCTTTACCCTTCATGCTTGTACAACTAAACACATCTTAAAAGGAGTATTTTTGCATTTAAAACATGCATATATGTGCTGAAGTTTTTTAAAAATATATGGCTCACGTGAGGAGAATATAACGGTCATAGCAGGAACATTTATTTAGATAAAGAGCAAAGCAAAGTAAACAATATTTGCTTTGTTAGTGTTGGTCCTTTGCTGCTAGTGAATTATGATCAGGACATTGTGAGGTAGTTTCTTGCAGGAGGGAAAAAAAGAGTGTATTTTACCTTGATATACAGGTGTGCATTTGCAAAACGTCTATACTTCAGGACTCAGGTGTAAGTTGTACTAGTTTGATAAGACTATGGCTAAATTTTGTAATTTAAACAAGGATTTATCAAAGTCGCAGGGGCTTGTTTAGTTGTTGAGTAGAGTGCACACATGGATGCTTTAGTGATTTTCTGATGGATGACATGCTTAGTGTAAATCCTTGCTTATTAGTATCTTTTATCATGAGAAAGAATGGTGCCCTAGTCTGACACACAAACTACTCTGTGTCTTAGTTTTTCACTGTTGAATCCTTTACTATGCTCTATGCAAAGAAATTTCTCCTGAGCTAAAGTTTTTGAGTGTGTCCATCTATAATAGCTTCTTTTTTTTTTCCCATGACTTTCTCTCTGCAGAGCTTGAGAAACACATTCCTGATCTCCATGTGTTGATTTCGACCCCTTTTCATCCTGCCTATGTCACGGCTGAAAGGATCAAGAAGGCAAAAAATCTAC</genome_strand>
        <mrna_strand>TGGAGTTTATTCTTCTCTCTGTTTTTAGTAAGTACGAAACCCTTTTCTGTAAATCCAAAAAAAATTCCGATGGCGATGAGGCGTGTAGCTTCTACAGCAGCTCGTGCTATTGNNACACCTTCATCCTTAGTTTTTACCAGAGAACTTCAG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCTTCCCCTGGCCCCAAAAAGATTGTGGGTGTTTTCTACAAAGCAAATGAATATGCTGAAATGAACCCCAACTTTTTGGGCTGTGCAGAAAATGCCTTGGGGATACGTGAATGGTTAGAGTCTAAAGGTCATCAGTACATATTCACTCCTGACAAAGAAGGACCAGATTGTG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGCTTGAGAAACACATTCCTGATCTCCATGTGTTGATTTCGACCCCTTTTCATCCTGCCTATGTCACGGCTGAAAGGATCAAGAAGGCAAAAAATCTAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0236E02-u8qcS/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E471275" ref_strand="+" ref_description="SGN-E471275 [cSTB-23-M12]">
      <seq>tggagttgattcttctctctgtttttaggaagtacataaccctttgctgtaaatccaaaaatttccgatggccatgaggcgtgtagcttctacagcagctcgtgctattgcttcaccttcatccttagtttttaccaaaaaacttcaggcttcccctggccccaaaaagattgtgggtgttttctacaaagcaaatgaatattcttaaatgaaccccaactttttcggctgagcataaaatgccttggggatacatgaatggttataatctaaaggtcatcagtacatagtcactcctgacaaagaaggaccagattgtgagcttgagaaacacattcctgatcttcatgtgttgattaagaccccttttcatactgcctatgtcacggctgaaaggatca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0236E02-u8qcS/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0236E02.1" temp_strand="+" temp_description="C02HBa0236E02.1  AC215430.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0236E02 sequenced_by:kribb upload_account_name:korea">
        <position start="65240" stop="68145"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="65540" g_stop="65689" g_length="150"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="148" r_length="148" r_score="0.927"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="65690" i_stop="66849" i_length="1160">
            <donor d_prob="1.000" d_score="0.96"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="66850" g_stop="67021" g_length="172"/>
          <reference_exon_boundary r_type="cDNA" r_start="149" r_stop="320" r_length="172" r_score="0.953"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="67022" i_stop="67764" i_length="743">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="0.987" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="67765" g_stop="67845" g_length="81"/>
          <reference_exon_boundary r_type="cDNA" r_start="321" r_stop="401" r_length="81" r_score="0.951"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0236E02.1" gen_strand="+" ref_id="SGN-E471275" ref_strand="+">
        <total_alignment_score>0.943</total_alignment_score>
        <cumulative_length_of_scored_exons>403</cumulative_length_of_scored_exons>
        <coverage percentage="1.005" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0236E02.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E471275" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="65540" e_stop="65689"/>
          <exon e_start="66850" e_stop="67021"/>
          <exon e_start="67765" e_stop="67845"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGGAGTTTATTCTTCTCTCTGTTTTTAGTAAGTACGAAACCCTTTTCTGTAAATCCAAAAAAAATTCCGATGGCGATGAGGCGTGTAGCTTCTACAGCAGCTCGTGCTATTGCTTCACCTTCATCCTTAGTTTTTACCAGAGAACTTCAGGTAACTAGCCATTTCTCCTCAATAGCCACTTTTTGTTGCTTTTGTTTTATATGACCTAGTTTTCGCCCTTTGATGAATTATCGGAAACCGGCACGGATCAACTCCGATTTTTCGAGAATCAAGTGAGTTGGAGATTGGAACAGAGGAAACTAAAGGAATTTAACCGTGTAAAGGAAAAAATTAAACACACTGTATTTGGTGCTCTACCCCTCGTCTCTTCTTTTTGGCTTTCCCCGTACTCTACACACCAAATGAAATGGCTCGGATATGAAAGGACTAATAACTTTTCAGTTTTCATTACTGCGTCCTTTTTTAAGCTTTCAGTTTTAATTTGCGTGAATATACCTAATTTTTATTAGGGTAGAGTTATATGTTTCAAATTAAATTGCTACCAAGTTAAATTTAAGAATGTTACATAAATTTAGAGACGGCAAGTTTATATACCAAGAAGGGTACTCCTTCATCCACAGAGAAACGGTGTCCAGTTCGAGTATGGGCGTGAATCTAGATATAGTTAATTCCAATGCAGATATCAGACATCGAGTGAGGAAAAAAAAGATTTTATTAATTTGTTATTTTTAGGTTGCTTTTCCTTTAACTGAAAATCTAACCCGGCAGGACCACAACAGTTCTTTTCCGATCATTACTAATGATACTTGATTTTCACGTGCGATTTCTGATATTTTTATACGGAGTAGGTGAAGAGTGAAATGTTTCACGGGTCTCAAGGACAATGGCAGCAGTGCTTCATTTTTTTTTGCATCTTCACGTGCTATATTATTACTTTGTTTATACTAGTTCGACTTGGAAAATCTTTTCATATTCAGTTGTCTGGGGAATAAATAAGATATTTCTTATTTTTTGATTAAAAAAAGAAGAAGATATTTCTTATTTAAAGAAGTGACAAATTGTACTAACTCATTTACCATGCCTAATATATTATATGTGACAATGATGATTTTTTTTAACTATTAATTGTTAGTTTGGACAAAAATGATCAAAGCAAGTATATTGAATAATGCTTATTTCTTGCCAACTGGTGCATCTACGAGATTATAGGAGTTGGATTATAATTTTAGCACATCCAGCATGCTTATATGACCTTAAAATATTCATGTATATTCTGTCCACTCACCTTTTATTTCTTCATTATTTTACAGGCTTCCCCTGGCCCCAAAAAGATTGTGGGTGTTTTCTACAAAGCAAATGAATATGCTGAAATGAACCCCAACTTTTTGGGCTGTGCAGAAAATGCCTTGGGGATACGTGAATGGTTAGAGTCTAAAGGTCATCAGTACATAGTCACTCCTGACAAAGAAGGACCAGATTGTGGTTAGTTCCTGCTAATCTATAATCTCTCATGTTCTATCCATTATCCCACTGAAGCCTATGCATTTCTAAAGATAATTTCTTTACCCTTCATGCTTGTACAACTAAACACATCTTAAAAGGAGTATTTTTGCATTTAAAACATGCATATATGTGCTGAAGTTTTTTAAAAATATATGGCTCACGTGAGGAGAATATAACGGTCATAGCAGGAACATTTATTTAGATAAAGAGCAAAGCAAAGTAAACAATATTTGCTTTGTTAGTGTTGGTCCTTTGCTGCTAGTGAATTATGATCAGGACATTGTGAGGTAGTTTCTTGCAGGAGGGAAAAAAAGAGTGTATTTTACCTTGATATACAGGTGTGCATTTGCAAAACGTCTATACTTCAGGACTCAGGTGTAAGTTGTACTAGTTTGATAAGACTATGGCTAAATTTTGTAATTTAAACAAGGATTTATCAAAGTCGCAGGGGCTTGTTTAGTTGTTGAGTAGAGTGCACACATGGATGCTTTAGTGATTTTCTGATGGATGACATGCTTAGTGTAAATCCTTGCTTATTAGTATCTTTTATCATGAGAAAGAATGGTGCCCTAGTCTGACACACAAACTACTCTGTGTCTTAGTTTTTCACTGTTGAATCCTTTACTATGCTCTATGCAAAGAAATTTCTCCTGAGCTAAAGTTTTTGAGTGTGTCCATCTATAATAGCTTCTTTTTTTTTTCCCATGACTTTCTCTCTGCAGAGCTTGAGAAACACATTCCTGATCTCCATGTGTTGATTTCGACCCCTTTTCATCCTGCCTATGTCACGGCTGAAAGGATCA</genome_strand>
        <mrna_strand>TGGAGTTGATTCTTCTCTCTGTTTTTAGGAAGTACATAACCCTTTGCTGTAAATCC--AAAAATTTCCGATGGCCATGAGGCGTGTAGCTTCTACAGCAGCTCGTGCTATTGCTTCACCTTCATCCTTAGTTTTTACCAAAAAACTTCAG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCTTCCCCTGGCCCCAAAAAGATTGTGGGTGTTTTCTACAAAGCAAATGAATATTCTTAAATGAACCCCAACTTTTTCGGCTGAGCATAAAATGCCTTGGGGATACATGAATGGTTATAATCTAAAGGTCATCAGTACATAGTCACTCCTGACAAAGAAGGACCAGATTGTG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGCTTGAGAAACACATTCCTGATCTTCATGTGTTGATTAAGACCCCTTTTCATACTGCCTATGTCACGGCTGAAAGGATCA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0236E02-u8qcS/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E341207" ref_strand="+" ref_description="SGN-E341207 [cTOE-22-K15]">
      <seq>tggagtttattcttctctctgtttttagtaagtacgaaacccttttctgtaaatccaaaaaaaattccgatggcgatgaggcgtgtagcttctacagcagctcgtgctattgcttcaccttcatccttagtttttaccagagaacttcaggcttcccctggccccaaaaagattgtgggtgttttctacaaagcaaatgaatatgctgaaatgaaccccaactttttgggctgtgcagaaaatgccttggggatacgtgaatggttagagtctaaaggtcatcagtacatagtcactcctgacaaagaaggaccagattgtgagcttgagaaacacattcctgatctccatgtgttgatttcgaccccttt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0236E02-u8qcS/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0236E02.1" temp_strand="+" temp_description="C02HBa0236E02.1  AC215430.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0236E02 sequenced_by:kribb upload_account_name:korea">
        <position start="65240" stop="68113"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="65540" g_stop="65689" g_length="150"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="150" r_length="150" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="65690" i_stop="66849" i_length="1160">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="66850" g_stop="67021" g_length="172"/>
          <reference_exon_boundary r_type="cDNA" r_start="151" r_stop="322" r_length="172" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="67022" i_stop="67764" i_length="743">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="0.987" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="67765" g_stop="67813" g_length="49"/>
          <reference_exon_boundary r_type="cDNA" r_start="323" r_stop="371" r_length="49" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0236E02.1" gen_strand="+" ref_id="SGN-E341207" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>371</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0236E02.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E341207" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="65540" e_stop="65689"/>
          <exon e_start="66850" e_stop="67021"/>
          <exon e_start="67765" e_stop="67813"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGGAGTTTATTCTTCTCTCTGTTTTTAGTAAGTACGAAACCCTTTTCTGTAAATCCAAAAAAAATTCCGATGGCGATGAGGCGTGTAGCTTCTACAGCAGCTCGTGCTATTGCTTCACCTTCATCCTTAGTTTTTACCAGAGAACTTCAGGTAACTAGCCATTTCTCCTCAATAGCCACTTTTTGTTGCTTTTGTTTTATATGACCTAGTTTTCGCCCTTTGATGAATTATCGGAAACCGGCACGGATCAACTCCGATTTTTCGAGAATCAAGTGAGTTGGAGATTGGAACAGAGGAAACTAAAGGAATTTAACCGTGTAAAGGAAAAAATTAAACACACTGTATTTGGTGCTCTACCCCTCGTCTCTTCTTTTTGGCTTTCCCCGTACTCTACACACCAAATGAAATGGCTCGGATATGAAAGGACTAATAACTTTTCAGTTTTCATTACTGCGTCCTTTTTTAAGCTTTCAGTTTTAATTTGCGTGAATATACCTAATTTTTATTAGGGTAGAGTTATATGTTTCAAATTAAATTGCTACCAAGTTAAATTTAAGAATGTTACATAAATTTAGAGACGGCAAGTTTATATACCAAGAAGGGTACTCCTTCATCCACAGAGAAACGGTGTCCAGTTCGAGTATGGGCGTGAATCTAGATATAGTTAATTCCAATGCAGATATCAGACATCGAGTGAGGAAAAAAAAGATTTTATTAATTTGTTATTTTTAGGTTGCTTTTCCTTTAACTGAAAATCTAACCCGGCAGGACCACAACAGTTCTTTTCCGATCATTACTAATGATACTTGATTTTCACGTGCGATTTCTGATATTTTTATACGGAGTAGGTGAAGAGTGAAATGTTTCACGGGTCTCAAGGACAATGGCAGCAGTGCTTCATTTTTTTTTGCATCTTCACGTGCTATATTATTACTTTGTTTATACTAGTTCGACTTGGAAAATCTTTTCATATTCAGTTGTCTGGGGAATAAATAAGATATTTCTTATTTTTTGATTAAAAAAAGAAGAAGATATTTCTTATTTAAAGAAGTGACAAATTGTACTAACTCATTTACCATGCCTAATATATTATATGTGACAATGATGATTTTTTTTAACTATTAATTGTTAGTTTGGACAAAAATGATCAAAGCAAGTATATTGAATAATGCTTATTTCTTGCCAACTGGTGCATCTACGAGATTATAGGAGTTGGATTATAATTTTAGCACATCCAGCATGCTTATATGACCTTAAAATATTCATGTATATTCTGTCCACTCACCTTTTATTTCTTCATTATTTTACAGGCTTCCCCTGGCCCCAAAAAGATTGTGGGTGTTTTCTACAAAGCAAATGAATATGCTGAAATGAACCCCAACTTTTTGGGCTGTGCAGAAAATGCCTTGGGGATACGTGAATGGTTAGAGTCTAAAGGTCATCAGTACATAGTCACTCCTGACAAAGAAGGACCAGATTGTGGTTAGTTCCTGCTAATCTATAATCTCTCATGTTCTATCCATTATCCCACTGAAGCCTATGCATTTCTAAAGATAATTTCTTTACCCTTCATGCTTGTACAACTAAACACATCTTAAAAGGAGTATTTTTGCATTTAAAACATGCATATATGTGCTGAAGTTTTTTAAAAATATATGGCTCACGTGAGGAGAATATAACGGTCATAGCAGGAACATTTATTTAGATAAAGAGCAAAGCAAAGTAAACAATATTTGCTTTGTTAGTGTTGGTCCTTTGCTGCTAGTGAATTATGATCAGGACATTGTGAGGTAGTTTCTTGCAGGAGGGAAAAAAAGAGTGTATTTTACCTTGATATACAGGTGTGCATTTGCAAAACGTCTATACTTCAGGACTCAGGTGTAAGTTGTACTAGTTTGATAAGACTATGGCTAAATTTTGTAATTTAAACAAGGATTTATCAAAGTCGCAGGGGCTTGTTTAGTTGTTGAGTAGAGTGCACACATGGATGCTTTAGTGATTTTCTGATGGATGACATGCTTAGTGTAAATCCTTGCTTATTAGTATCTTTTATCATGAGAAAGAATGGTGCCCTAGTCTGACACACAAACTACTCTGTGTCTTAGTTTTTCACTGTTGAATCCTTTACTATGCTCTATGCAAAGAAATTTCTCCTGAGCTAAAGTTTTTGAGTGTGTCCATCTATAATAGCTTCTTTTTTTTTTCCCATGACTTTCTCTCTGCAGAGCTTGAGAAACACATTCCTGATCTCCATGTGTTGATTTCGACCCCTTT</genome_strand>
        <mrna_strand>TGGAGTTTATTCTTCTCTCTGTTTTTAGTAAGTACGAAACCCTTTTCTGTAAATCCAAAAAAAATTCCGATGGCGATGAGGCGTGTAGCTTCTACAGCAGCTCGTGCTATTGCTTCACCTTCATCCTTAGTTTTTACCAGAGAACTTCAG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCTTCCCCTGGCCCCAAAAAGATTGTGGGTGTTTTCTACAAAGCAAATGAATATGCTGAAATGAACCCCAACTTTTTGGGCTGTGCAGAAAATGCCTTGGGGATACGTGAATGGTTAGAGTCTAAAGGTCATCAGTACATAGTCACTCCTGACAAAGAAGGACCAGATTGTG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGCTTGAGAAACACATTCCTGATCTCCATGTGTTGATTTCGACCCCTTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0236E02-u8qcS/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E339737" ref_strand="+" ref_description="SGN-E339737 [cTOE-16-B17]">
      <seq>gaattcggcaccgaggctggagttcattcttctctctgtttttagtaagtacgaaacccttttctgtaaatccaaaaaaaattccgatggcgatgaggcgtgtagcttctacagcagctcgtgcctattgcttcaccttcatccttagtttttaccagagaacttcaggcttcccctggccccaaaaagattgtgggtgttttctacaaagcaaatgaatatgctgaaatgaaccccaactttttgggctg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0236E02-u8qcS/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0236E02.1" temp_strand="+" temp_description="C02HBa0236E02.1  AC215430.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0236E02 sequenced_by:kribb upload_account_name:korea">
        <position start="65239" stop="67232"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="65540" g_stop="65689" g_length="150"/>
          <reference_exon_boundary r_type="cDNA" r_start="18" r_stop="168" r_length="151" r_score="0.980"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="65690" i_stop="66849" i_length="1160">
            <donor d_prob="1.000" d_score="0.96"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="66850" g_stop="66932" g_length="83"/>
          <reference_exon_boundary r_type="cDNA" r_start="169" r_stop="251" r_length="83" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0236E02.1" gen_strand="+" ref_id="SGN-E339737" ref_strand="+">
        <total_alignment_score>0.987</total_alignment_score>
        <cumulative_length_of_scored_exons>233</cumulative_length_of_scored_exons>
        <coverage percentage="0.928" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0236E02.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E339737" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="65540" e_stop="65689"/>
          <exon e_start="66850" e_stop="66932"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGGAGTTTATTCTTCTCTCTGTTTTTAGTAAGTACGAAACCCTTTTCTGTAAATCCAAAAAAAATTCCGATGGCGATGAGGCGTGTAGCTTCTACAGCAGCTCGTG-CTATTGCTTCACCTTCATCCTTAGTTTTTACCAGAGAACTTCAGGTAACTAGCCATTTCTCCTCAATAGCCACTTTTTGTTGCTTTTGTTTTATATGACCTAGTTTTCGCCCTTTGATGAATTATCGGAAACCGGCACGGATCAACTCCGATTTTTCGAGAATCAAGTGAGTTGGAGATTGGAACAGAGGAAACTAAAGGAATTTAACCGTGTAAAGGAAAAAATTAAACACACTGTATTTGGTGCTCTACCCCTCGTCTCTTCTTTTTGGCTTTCCCCGTACTCTACACACCAAATGAAATGGCTCGGATATGAAAGGACTAATAACTTTTCAGTTTTCATTACTGCGTCCTTTTTTAAGCTTTCAGTTTTAATTTGCGTGAATATACCTAATTTTTATTAGGGTAGAGTTATATGTTTCAAATTAAATTGCTACCAAGTTAAATTTAAGAATGTTACATAAATTTAGAGACGGCAAGTTTATATACCAAGAAGGGTACTCCTTCATCCACAGAGAAACGGTGTCCAGTTCGAGTATGGGCGTGAATCTAGATATAGTTAATTCCAATGCAGATATCAGACATCGAGTGAGGAAAAAAAAGATTTTATTAATTTGTTATTTTTAGGTTGCTTTTCCTTTAACTGAAAATCTAACCCGGCAGGACCACAACAGTTCTTTTCCGATCATTACTAATGATACTTGATTTTCACGTGCGATTTCTGATATTTTTATACGGAGTAGGTGAAGAGTGAAATGTTTCACGGGTCTCAAGGACAATGGCAGCAGTGCTTCATTTTTTTTTGCATCTTCACGTGCTATATTATTACTTTGTTTATACTAGTTCGACTTGGAAAATCTTTTCATATTCAGTTGTCTGGGGAATAAATAAGATATTTCTTATTTTTTGATTAAAAAAAGAAGAAGATATTTCTTATTTAAAGAAGTGACAAATTGTACTAACTCATTTACCATGCCTAATATATTATATGTGACAATGATGATTTTTTTTAACTATTAATTGTTAGTTTGGACAAAAATGATCAAAGCAAGTATATTGAATAATGCTTATTTCTTGCCAACTGGTGCATCTACGAGATTATAGGAGTTGGATTATAATTTTAGCACATCCAGCATGCTTATATGACCTTAAAATATTCATGTATATTCTGTCCACTCACCTTTTATTTCTTCATTATTTTACAGGCTTCCCCTGGCCCCAAAAAGATTGTGGGTGTTTTCTACAAAGCAAATGAATATGCTGAAATGAACCCCAACTTTTTGGGCTG</genome_strand>
        <mrna_strand>TGGAGTTCATTCTTCTCTCTGTTTTTAGTAAGTACGAAACCCTTTTCTGTAAATCCAAAAAAAATTCCGATGGCGATGAGGCGTGTAGCTTCTACAGCAGCTCGTGCCTATTGCTTCACCTTCATCCTTAGTTTTTACCAGAGAACTTCAG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCTTCCCCTGGCCCCAAAAAGATTGTGGGTGTTTTCTACAAAGCAAATGAATATGCTGAAATGAACCCCAACTTTTTGGGCTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0236E02-u8qcS/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E702568" ref_strand="+" ref_description="SGN-E702568 [FA19AD05]">
      <seq>ggagtttattcttctctctgtttttagtaagtacgaaacccttttctgtaaatccaaaaaaaattccgatggcgatgaggcgtgtagcttctacagcagctcgtgctattgcttcaccttcatccttagtttttaccagagaacttcaggcttcccctggccccaaaaagattgtgggtgttttctacaaagcaaatgaatatgctgaaatgaaccccaactttttgggctgtgcagaaaatgccttggggatacgtgaatggttagagtctaaaggtcatcagtacatagtcactcctgacaaagaaggaccagattgtgagcttgagaaacacattcctgatctccatgtgttgatttcgaccccttttcatcctgcctatgtcacggctgaaaggatcaagaaggcaaaaaatctacaacttctgctgacagctggaattggatcagatcatgttgatctgaaagctgctgctgctgctggattgacagtagcagaggtcactggaagcaatactgtctcagttgcggaagatgaactgatgcgaatcttaattcttgtccgaaatttcttacctggacatcatcaggttatcaatggggagtggaatgttgctgcaattgcgcacagagcttatgatttggaaggcaagactgttggaactgttggtgcaggacgtattggcagacttttactccagcgattgaagccatttaactgtaatctactttaccatgaccgtcttaagatggattctgagctagagaatcaaattggagcaaagtttgaggaagatctcgataagatgctctcgaaatgtgacatagtggtcatcaatacgcctcttacagagaaaacaaaaggaatgtttga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0236E02-u8qcS/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0236E02.1" temp_strand="+" temp_description="C02HBa0236E02.1  AC215430.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0236E02 sequenced_by:kribb upload_account_name:korea">
        <position start="65241" stop="68614"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="65541" g_stop="65689" g_length="149"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="149" r_length="149" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="65690" i_stop="66849" i_length="1160">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="66850" g_stop="67021" g_length="172"/>
          <reference_exon_boundary r_type="cDNA" r_start="150" r_stop="321" r_length="172" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="67022" i_stop="67764" i_length="743">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="0.987" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="67765" g_stop="68305" g_length="541"/>
          <reference_exon_boundary r_type="cDNA" r_start="322" r_stop="862" r_length="541" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0236E02.1" gen_strand="+" ref_id="SGN-E702568" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>862</cumulative_length_of_scored_exons>
        <coverage percentage="0.986" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0236E02.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E702568" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="65541" e_stop="65689"/>
          <exon e_start="66850" e_stop="67021"/>
          <exon e_start="67765" e_stop="68305"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGAGTTTATTCTTCTCTCTGTTTTTAGTAAGTACGAAACCCTTTTCTGTAAATCCAAAAAAAATTCCGATGGCGATGAGGCGTGTAGCTTCTACAGCAGCTCGTGCTATTGCTTCACCTTCATCCTTAGTTTTTACCAGAGAACTTCAGGTAACTAGCCATTTCTCCTCAATAGCCACTTTTTGTTGCTTTTGTTTTATATGACCTAGTTTTCGCCCTTTGATGAATTATCGGAAACCGGCACGGATCAACTCCGATTTTTCGAGAATCAAGTGAGTTGGAGATTGGAACAGAGGAAACTAAAGGAATTTAACCGTGTAAAGGAAAAAATTAAACACACTGTATTTGGTGCTCTACCCCTCGTCTCTTCTTTTTGGCTTTCCCCGTACTCTACACACCAAATGAAATGGCTCGGATATGAAAGGACTAATAACTTTTCAGTTTTCATTACTGCGTCCTTTTTTAAGCTTTCAGTTTTAATTTGCGTGAATATACCTAATTTTTATTAGGGTAGAGTTATATGTTTCAAATTAAATTGCTACCAAGTTAAATTTAAGAATGTTACATAAATTTAGAGACGGCAAGTTTATATACCAAGAAGGGTACTCCTTCATCCACAGAGAAACGGTGTCCAGTTCGAGTATGGGCGTGAATCTAGATATAGTTAATTCCAATGCAGATATCAGACATCGAGTGAGGAAAAAAAAGATTTTATTAATTTGTTATTTTTAGGTTGCTTTTCCTTTAACTGAAAATCTAACCCGGCAGGACCACAACAGTTCTTTTCCGATCATTACTAATGATACTTGATTTTCACGTGCGATTTCTGATATTTTTATACGGAGTAGGTGAAGAGTGAAATGTTTCACGGGTCTCAAGGACAATGGCAGCAGTGCTTCATTTTTTTTTGCATCTTCACGTGCTATATTATTACTTTGTTTATACTAGTTCGACTTGGAAAATCTTTTCATATTCAGTTGTCTGGGGAATAAATAAGATATTTCTTATTTTTTGATTAAAAAAAGAAGAAGATATTTCTTATTTAAAGAAGTGACAAATTGTACTAACTCATTTACCATGCCTAATATATTATATGTGACAATGATGATTTTTTTTAACTATTAATTGTTAGTTTGGACAAAAATGATCAAAGCAAGTATATTGAATAATGCTTATTTCTTGCCAACTGGTGCATCTACGAGATTATAGGAGTTGGATTATAATTTTAGCACATCCAGCATGCTTATATGACCTTAAAATATTCATGTATATTCTGTCCACTCACCTTTTATTTCTTCATTATTTTACAGGCTTCCCCTGGCCCCAAAAAGATTGTGGGTGTTTTCTACAAAGCAAATGAATATGCTGAAATGAACCCCAACTTTTTGGGCTGTGCAGAAAATGCCTTGGGGATACGTGAATGGTTAGAGTCTAAAGGTCATCAGTACATAGTCACTCCTGACAAAGAAGGACCAGATTGTGGTTAGTTCCTGCTAATCTATAATCTCTCATGTTCTATCCATTATCCCACTGAAGCCTATGCATTTCTAAAGATAATTTCTTTACCCTTCATGCTTGTACAACTAAACACATCTTAAAAGGAGTATTTTTGCATTTAAAACATGCATATATGTGCTGAAGTTTTTTAAAAATATATGGCTCACGTGAGGAGAATATAACGGTCATAGCAGGAACATTTATTTAGATAAAGAGCAAAGCAAAGTAAACAATATTTGCTTTGTTAGTGTTGGTCCTTTGCTGCTAGTGAATTATGATCAGGACATTGTGAGGTAGTTTCTTGCAGGAGGGAAAAAAAGAGTGTATTTTACCTTGATATACAGGTGTGCATTTGCAAAACGTCTATACTTCAGGACTCAGGTGTAAGTTGTACTAGTTTGATAAGACTATGGCTAAATTTTGTAATTTAAACAAGGATTTATCAAAGTCGCAGGGGCTTGTTTAGTTGTTGAGTAGAGTGCACACATGGATGCTTTAGTGATTTTCTGATGGATGACATGCTTAGTGTAAATCCTTGCTTATTAGTATCTTTTATCATGAGAAAGAATGGTGCCCTAGTCTGACACACAAACTACTCTGTGTCTTAGTTTTTCACTGTTGAATCCTTTACTATGCTCTATGCAAAGAAATTTCTCCTGAGCTAAAGTTTTTGAGTGTGTCCATCTATAATAGCTTCTTTTTTTTTTCCCATGACTTTCTCTCTGCAGAGCTTGAGAAACACATTCCTGATCTCCATGTGTTGATTTCGACCCCTTTTCATCCTGCCTATGTCACGGCTGAAAGGATCAAGAAGGCAAAAAATCTACAACTTCTGCTGACAGCTGGAATTGGATCAGATCATGTTGATCTGAAAGCTGCTGCTGCTGCTGGATTGACAGTAGCAGAGGTCACTGGAAGCAATACTGTCTCAGTTGCGGAAGATGAACTGATGCGAATCTTAATTCTTGTCCGAAATTTCTTACCTGGACATCATCAGGTTATCAATGGGGAGTGGAATGTTGCTGCAATTGCGCACAGAGCTTATGATTTGGAAGGCAAGACTGTTGGAACTGTTGGTGCAGGACGTATTGGCAGACTTTTACTCCAGCGATTGAAGCCATTTAACTGTAATCTACTTTACCATGACCGTCTTAAGATGGATTCTGAGCTAGAGAATCAAATTGGAGCAAAGTTTGAGGAAGATCTCGATAAGATGCTCTCGAAATGTGACATAGTGGTCATCAATACGCCTCTTACAGAGAAAACAAA</genome_strand>
        <mrna_strand>GGAGTTTATTCTTCTCTCTGTTTTTAGTAAGTACGAAACCCTTTTCTGTAAATCCAAAAAAAATTCCGATGGCGATGAGGCGTGTAGCTTCTACAGCAGCTCGTGCTATTGCTTCACCTTCATCCTTAGTTTTTACCAGAGAACTTCAG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCTTCCCCTGGCCCCAAAAAGATTGTGGGTGTTTTCTACAAAGCAAATGAATATGCTGAAATGAACCCCAACTTTTTGGGCTGTGCAGAAAATGCCTTGGGGATACGTGAATGGTTAGAGTCTAAAGGTCATCAGTACATAGTCACTCCTGACAAAGAAGGACCAGATTGTG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGCTTGAGAAACACATTCCTGATCTCCATGTGTTGATTTCGACCCCTTTTCATCCTGCCTATGTCACGGCTGAAAGGATCAAGAAGGCAAAAAATCTACAACTTCTGCTGACAGCTGGAATTGGATCAGATCATGTTGATCTGAAAGCTGCTGCTGCTGCTGGATTGACAGTAGCAGAGGTCACTGGAAGCAATACTGTCTCAGTTGCGGAAGATGAACTGATGCGAATCTTAATTCTTGTCCGAAATTTCTTACCTGGACATCATCAGGTTATCAATGGGGAGTGGAATGTTGCTGCAATTGCGCACAGAGCTTATGATTTGGAAGGCAAGACTGTTGGAACTGTTGGTGCAGGACGTATTGGCAGACTTTTACTCCAGCGATTGAAGCCATTTAACTGTAATCTACTTTACCATGACCGTCTTAAGATGGATTCTGAGCTAGAGAATCAAATTGGAGCAAAGTTTGAGGAAGATCTCGATAAGATGCTCTCGAAATGTGACATAGTGGTCATCAATACGCCTCTTACAGAGAAAACAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0236E02-u8qcS/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E213527" ref_strand="+" ref_description="SGN-E213527 [cLEC-71-M23]">
      <seq>ggagtttattcttctctctgtttttagtaagtacgaaacccttttctgtaaatccaaaaaaaattccgatggcgatgaggcgtgtagcttctacagcagctcgtgctattgcttcaccttcatccttagtttttaccagagaacttcaggcttcccctggccccaaaaagattgtgggtgttttctacaaagcaaatgaatatgctgaaatgaaccccaactttttgggctgtgcagaaaatgccttggggatacgtgaatggttagagtctaaaggtcatcagtacatagtcactcctgacaaagaaggaccagattgtgagcttgagaaacacattcctgatctccatgtgttgatttcgaccccttttcatcctgcctatgtcacggctgaaaggatcaagaaggcaaaaaatctacaacttctgctgacagctggaattggatcagatcatgttgatctgaaagctgctgctgctgctggattgacagtagcagaggtcactggaagcaatactgtctcagttgcggaagatgaactgatgcgaatcttaattcttgtccgaaatttcttacctggacatcatcaggttatcaatggggagtggaatgttgctgcaattgcgcacagagcttatgatttggaaggcaagactgttggaactgttggtgcaggacgtattggcagacttttactccagcgattgaagccatttaactgtaatctactttaccatgaccgtcttaagatggattctgagct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0236E02-u8qcS/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0236E02.1" temp_strand="+" temp_description="C02HBa0236E02.1  AC215430.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0236E02 sequenced_by:kribb upload_account_name:korea">
        <position start="65241" stop="68506"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="65541" g_stop="65689" g_length="149"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="149" r_length="149" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="65690" i_stop="66849" i_length="1160">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="66850" g_stop="67021" g_length="172"/>
          <reference_exon_boundary r_type="cDNA" r_start="150" r_stop="321" r_length="172" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="67022" i_stop="67764" i_length="743">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="0.987" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="67765" g_stop="68206" g_length="442"/>
          <reference_exon_boundary r_type="cDNA" r_start="322" r_stop="763" r_length="442" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0236E02.1" gen_strand="+" ref_id="SGN-E213527" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>763</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0236E02.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E213527" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="65541" e_stop="65689"/>
          <exon e_start="66850" e_stop="67021"/>
          <exon e_start="67765" e_stop="68206"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGAGTTTATTCTTCTCTCTGTTTTTAGTAAGTACGAAACCCTTTTCTGTAAATCCAAAAAAAATTCCGATGGCGATGAGGCGTGTAGCTTCTACAGCAGCTCGTGCTATTGCTTCACCTTCATCCTTAGTTTTTACCAGAGAACTTCAGGTAACTAGCCATTTCTCCTCAATAGCCACTTTTTGTTGCTTTTGTTTTATATGACCTAGTTTTCGCCCTTTGATGAATTATCGGAAACCGGCACGGATCAACTCCGATTTTTCGAGAATCAAGTGAGTTGGAGATTGGAACAGAGGAAACTAAAGGAATTTAACCGTGTAAAGGAAAAAATTAAACACACTGTATTTGGTGCTCTACCCCTCGTCTCTTCTTTTTGGCTTTCCCCGTACTCTACACACCAAATGAAATGGCTCGGATATGAAAGGACTAATAACTTTTCAGTTTTCATTACTGCGTCCTTTTTTAAGCTTTCAGTTTTAATTTGCGTGAATATACCTAATTTTTATTAGGGTAGAGTTATATGTTTCAAATTAAATTGCTACCAAGTTAAATTTAAGAATGTTACATAAATTTAGAGACGGCAAGTTTATATACCAAGAAGGGTACTCCTTCATCCACAGAGAAACGGTGTCCAGTTCGAGTATGGGCGTGAATCTAGATATAGTTAATTCCAATGCAGATATCAGACATCGAGTGAGGAAAAAAAAGATTTTATTAATTTGTTATTTTTAGGTTGCTTTTCCTTTAACTGAAAATCTAACCCGGCAGGACCACAACAGTTCTTTTCCGATCATTACTAATGATACTTGATTTTCACGTGCGATTTCTGATATTTTTATACGGAGTAGGTGAAGAGTGAAATGTTTCACGGGTCTCAAGGACAATGGCAGCAGTGCTTCATTTTTTTTTGCATCTTCACGTGCTATATTATTACTTTGTTTATACTAGTTCGACTTGGAAAATCTTTTCATATTCAGTTGTCTGGGGAATAAATAAGATATTTCTTATTTTTTGATTAAAAAAAGAAGAAGATATTTCTTATTTAAAGAAGTGACAAATTGTACTAACTCATTTACCATGCCTAATATATTATATGTGACAATGATGATTTTTTTTAACTATTAATTGTTAGTTTGGACAAAAATGATCAAAGCAAGTATATTGAATAATGCTTATTTCTTGCCAACTGGTGCATCTACGAGATTATAGGAGTTGGATTATAATTTTAGCACATCCAGCATGCTTATATGACCTTAAAATATTCATGTATATTCTGTCCACTCACCTTTTATTTCTTCATTATTTTACAGGCTTCCCCTGGCCCCAAAAAGATTGTGGGTGTTTTCTACAAAGCAAATGAATATGCTGAAATGAACCCCAACTTTTTGGGCTGTGCAGAAAATGCCTTGGGGATACGTGAATGGTTAGAGTCTAAAGGTCATCAGTACATAGTCACTCCTGACAAAGAAGGACCAGATTGTGGTTAGTTCCTGCTAATCTATAATCTCTCATGTTCTATCCATTATCCCACTGAAGCCTATGCATTTCTAAAGATAATTTCTTTACCCTTCATGCTTGTACAACTAAACACATCTTAAAAGGAGTATTTTTGCATTTAAAACATGCATATATGTGCTGAAGTTTTTTAAAAATATATGGCTCACGTGAGGAGAATATAACGGTCATAGCAGGAACATTTATTTAGATAAAGAGCAAAGCAAAGTAAACAATATTTGCTTTGTTAGTGTTGGTCCTTTGCTGCTAGTGAATTATGATCAGGACATTGTGAGGTAGTTTCTTGCAGGAGGGAAAAAAAGAGTGTATTTTACCTTGATATACAGGTGTGCATTTGCAAAACGTCTATACTTCAGGACTCAGGTGTAAGTTGTACTAGTTTGATAAGACTATGGCTAAATTTTGTAATTTAAACAAGGATTTATCAAAGTCGCAGGGGCTTGTTTAGTTGTTGAGTAGAGTGCACACATGGATGCTTTAGTGATTTTCTGATGGATGACATGCTTAGTGTAAATCCTTGCTTATTAGTATCTTTTATCATGAGAAAGAATGGTGCCCTAGTCTGACACACAAACTACTCTGTGTCTTAGTTTTTCACTGTTGAATCCTTTACTATGCTCTATGCAAAGAAATTTCTCCTGAGCTAAAGTTTTTGAGTGTGTCCATCTATAATAGCTTCTTTTTTTTTTCCCATGACTTTCTCTCTGCAGAGCTTGAGAAACACATTCCTGATCTCCATGTGTTGATTTCGACCCCTTTTCATCCTGCCTATGTCACGGCTGAAAGGATCAAGAAGGCAAAAAATCTACAACTTCTGCTGACAGCTGGAATTGGATCAGATCATGTTGATCTGAAAGCTGCTGCTGCTGCTGGATTGACAGTAGCAGAGGTCACTGGAAGCAATACTGTCTCAGTTGCGGAAGATGAACTGATGCGAATCTTAATTCTTGTCCGAAATTTCTTACCTGGACATCATCAGGTTATCAATGGGGAGTGGAATGTTGCTGCAATTGCGCACAGAGCTTATGATTTGGAAGGCAAGACTGTTGGAACTGTTGGTGCAGGACGTATTGGCAGACTTTTACTCCAGCGATTGAAGCCATTTAACTGTAATCTACTTTACCATGACCGTCTTAAGATGGATTCTGAGCT</genome_strand>
        <mrna_strand>GGAGTTTATTCTTCTCTCTGTTTTTAGTAAGTACGAAACCCTTTTCTGTAAATCCAAAAAAAATTCCGATGGCGATGAGGCGTGTAGCTTCTACAGCAGCTCGTGCTATTGCTTCACCTTCATCCTTAGTTTTTACCAGAGAACTTCAG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCTTCCCCTGGCCCCAAAAAGATTGTGGGTGTTTTCTACAAAGCAAATGAATATGCTGAAATGAACCCCAACTTTTTGGGCTGTGCAGAAAATGCCTTGGGGATACGTGAATGGTTAGAGTCTAAAGGTCATCAGTACATAGTCACTCCTGACAAAGAAGGACCAGATTGTG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGCTTGAGAAACACATTCCTGATCTCCATGTGTTGATTTCGACCCCTTTTCATCCTGCCTATGTCACGGCTGAAAGGATCAAGAAGGCAAAAAATCTACAACTTCTGCTGACAGCTGGAATTGGATCAGATCATGTTGATCTGAAAGCTGCTGCTGCTGCTGGATTGACAGTAGCAGAGGTCACTGGAAGCAATACTGTCTCAGTTGCGGAAGATGAACTGATGCGAATCTTAATTCTTGTCCGAAATTTCTTACCTGGACATCATCAGGTTATCAATGGGGAGTGGAATGTTGCTGCAATTGCGCACAGAGCTTATGATTTGGAAGGCAAGACTGTTGGAACTGTTGGTGCAGGACGTATTGGCAGACTTTTACTCCAGCGATTGAAGCCATTTAACTGTAATCTACTTTACCATGACCGTCTTAAGATGGATTCTGAGCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0236E02-u8qcS/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E484833" ref_strand="+" ref_description="SGN-E484833 [cSTE-15-B5]">
      <seq>ggagtgtattcttctctctgtttttaccaagtacaaaaccctttgctgtaaatccaaaaaattccgatggcgatgagtcgtgtagcttctacagcagctcgtgctattacttcaccttcatccttagtttttaccagagaacttcaggcttcccctggccccaaaaagattgtgggtgttttctacaaagcaaatgaatatgctgaaatgaaccccaactttttgggctgtgcagaaaatgccttggggatacgtgaatggttagaatctaaaggtcatcagtacatagtcactcctgacaaagaaggaccggattgtgagcttgagaaacacattcctgatctccatgtgttgatttcgaccccttttcatcctgcctatgtcacggctgaaaggatcaagaaggcaaaaaatctacaactactgctgacagctggaattggatcagatcatgttgatctgaaagctgctgctgctgctggattgacagtagcagaggtcactggaagcaatactgtctcagttgcggaagatgaactgatgcgaatcttaattcttgtccgaaattcttgcctggacatcatcaggttatcaatggggagtggaaatgttgctgcattgcgcacagagcttatgatttggaag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0236E02-u8qcS/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0236E02.1" temp_strand="+" temp_description="C02HBa0236E02.1  AC215430.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0236E02 sequenced_by:kribb upload_account_name:korea">
        <position start="65241" stop="68391"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="65541" g_stop="65689" g_length="149"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="147" r_length="147" r_score="0.940"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="65690" i_stop="66849" i_length="1160">
            <donor d_prob="1.000" d_score="0.98"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="66850" g_stop="67021" g_length="172"/>
          <reference_exon_boundary r_type="cDNA" r_start="148" r_stop="319" r_length="172" r_score="0.988"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="67022" i_stop="67764" i_length="743">
            <donor d_prob="0.994" d_score="0.98"/>
            <acceptor a_prob="0.987" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="67765" g_stop="68091" g_length="327"/>
          <reference_exon_boundary r_type="cDNA" r_start="320" r_stop="645" r_length="326" r_score="0.982"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0236E02.1" gen_strand="+" ref_id="SGN-E484833" ref_strand="+">
        <total_alignment_score>0.974</total_alignment_score>
        <cumulative_length_of_scored_exons>648</cumulative_length_of_scored_exons>
        <coverage percentage="1.005" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0236E02.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E484833" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="65541" e_stop="65689"/>
          <exon e_start="66850" e_stop="67021"/>
          <exon e_start="67765" e_stop="68091"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGAGTTTATTCTTCTCTCTGTTTTTAGTAAGTACGAAACCCTTTTCTGTAAATCCAAAAAAAATTCCGATGGCGATGAGGCGTGTAGCTTCTACAGCAGCTCGTGCTATTGCTTCACCTTCATCCTTAGTTTTTACCAGAGAACTTCAGGTAACTAGCCATTTCTCCTCAATAGCCACTTTTTGTTGCTTTTGTTTTATATGACCTAGTTTTCGCCCTTTGATGAATTATCGGAAACCGGCACGGATCAACTCCGATTTTTCGAGAATCAAGTGAGTTGGAGATTGGAACAGAGGAAACTAAAGGAATTTAACCGTGTAAAGGAAAAAATTAAACACACTGTATTTGGTGCTCTACCCCTCGTCTCTTCTTTTTGGCTTTCCCCGTACTCTACACACCAAATGAAATGGCTCGGATATGAAAGGACTAATAACTTTTCAGTTTTCATTACTGCGTCCTTTTTTAAGCTTTCAGTTTTAATTTGCGTGAATATACCTAATTTTTATTAGGGTAGAGTTATATGTTTCAAATTAAATTGCTACCAAGTTAAATTTAAGAATGTTACATAAATTTAGAGACGGCAAGTTTATATACCAAGAAGGGTACTCCTTCATCCACAGAGAAACGGTGTCCAGTTCGAGTATGGGCGTGAATCTAGATATAGTTAATTCCAATGCAGATATCAGACATCGAGTGAGGAAAAAAAAGATTTTATTAATTTGTTATTTTTAGGTTGCTTTTCCTTTAACTGAAAATCTAACCCGGCAGGACCACAACAGTTCTTTTCCGATCATTACTAATGATACTTGATTTTCACGTGCGATTTCTGATATTTTTATACGGAGTAGGTGAAGAGTGAAATGTTTCACGGGTCTCAAGGACAATGGCAGCAGTGCTTCATTTTTTTTTGCATCTTCACGTGCTATATTATTACTTTGTTTATACTAGTTCGACTTGGAAAATCTTTTCATATTCAGTTGTCTGGGGAATAAATAAGATATTTCTTATTTTTTGATTAAAAAAAGAAGAAGATATTTCTTATTTAAAGAAGTGACAAATTGTACTAACTCATTTACCATGCCTAATATATTATATGTGACAATGATGATTTTTTTTAACTATTAATTGTTAGTTTGGACAAAAATGATCAAAGCAAGTATATTGAATAATGCTTATTTCTTGCCAACTGGTGCATCTACGAGATTATAGGAGTTGGATTATAATTTTAGCACATCCAGCATGCTTATATGACCTTAAAATATTCATGTATATTCTGTCCACTCACCTTTTATTTCTTCATTATTTTACAGGCTTCCCCTGGCCCCAAAAAGATTGTGGGTGTTTTCTACAAAGCAAATGAATATGCTGAAATGAACCCCAACTTTTTGGGCTGTGCAGAAAATGCCTTGGGGATACGTGAATGGTTAGAGTCTAAAGGTCATCAGTACATAGTCACTCCTGACAAAGAAGGACCAGATTGTGGTTAGTTCCTGCTAATCTATAATCTCTCATGTTCTATCCATTATCCCACTGAAGCCTATGCATTTCTAAAGATAATTTCTTTACCCTTCATGCTTGTACAACTAAACACATCTTAAAAGGAGTATTTTTGCATTTAAAACATGCATATATGTGCTGAAGTTTTTTAAAAATATATGGCTCACGTGAGGAGAATATAACGGTCATAGCAGGAACATTTATTTAGATAAAGAGCAAAGCAAAGTAAACAATATTTGCTTTGTTAGTGTTGGTCCTTTGCTGCTAGTGAATTATGATCAGGACATTGTGAGGTAGTTTCTTGCAGGAGGGAAAAAAAGAGTGTATTTTACCTTGATATACAGGTGTGCATTTGCAAAACGTCTATACTTCAGGACTCAGGTGTAAGTTGTACTAGTTTGATAAGACTATGGCTAAATTTTGTAATTTAAACAAGGATTTATCAAAGTCGCAGGGGCTTGTTTAGTTGTTGAGTAGAGTGCACACATGGATGCTTTAGTGATTTTCTGATGGATGACATGCTTAGTGTAAATCCTTGCTTATTAGTATCTTTTATCATGAGAAAGAATGGTGCCCTAGTCTGACACACAAACTACTCTGTGTCTTAGTTTTTCACTGTTGAATCCTTTACTATGCTCTATGCAAAGAAATTTCTCCTGAGCTAAAGTTTTTGAGTGTGTCCATCTATAATAGCTTCTTTTTTTTTTCCCATGACTTTCTCTCTGCAGAGCTTGAGAAACACATTCCTGATCTCCATGTGTTGATTTCGACCCCTTTTCATCCTGCCTATGTCACGGCTGAAAGGATCAAGAAGGCAAAAAATCTACAACTTCTGCTGACAGCTGGAATTGGATCAGATCATGTTGATCTGAAAGCTGCTGCTGCTGCTGGATTGACAGTAGCAGAGGTCACTGGAAGCAATACTGTCTCAGTTGCGGAAGATGAACTGATGCGAATCTTAATTCTTGTCCGAAATTTCTTACCTGGACATCATCAGGTTATCAATGGGGAGTGG-AATGTTGCTGCAATTGCGCACAGAGCTTATGATTTGGAAG</genome_strand>
        <mrna_strand>GGAGTGTATTCTTCTCTCTGTTTTTACCAAGTACAAAACCCTTTGCTGTAAATCC--AAAAAATTCCGATGGCGATGAGTCGTGTAGCTTCTACAGCAGCTCGTGCTATTACTTCACCTTCATCCTTAGTTTTTACCAGAGAACTTCAG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCTTCCCCTGGCCCCAAAAAGATTGTGGGTGTTTTCTACAAAGCAAATGAATATGCTGAAATGAACCCCAACTTTTTGGGCTGTGCAGAAAATGCCTTGGGGATACGTGAATGGTTAGAATCTAAAGGTCATCAGTACATAGTCACTCCTGACAAAGAAGGACCGGATTGTG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGCTTGAGAAACACATTCCTGATCTCCATGTGTTGATTTCGACCCCTTTTCATCCTGCCTATGTCACGGCTGAAAGGATCAAGAAGGCAAAAAATCTACAACTACTGCTGACAGCTGGAATTGGATCAGATCATGTTGATCTGAAAGCTGCTGCTGCTGCTGGATTGACAGTAGCAGAGGTCACTGGAAGCAATACTGTCTCAGTTGCGGAAGATGAACTGATGCGAATCTTAATTCTTGTCCGAAA-TTCTTGCCTGGACATCATCAGGTTATCAATGGGGAGTGGAAATGTTGCTGC-ATTGCGCACAGAGCTTATGATTTGGAAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0236E02-u8qcS/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E202311" ref_strand="+" ref_description="SGN-E202311 [cLEC-6-K18]">
      <seq>ggagtttattcttctctctgtttttagtaagtacgaaacccttttctgtaaatccaaaaaaaattccgatggcgatgaggcgtgtagcttctacagcagctcgtgctattgcttcaccttcatccttagtttttaccagagaacttcaggcttcccctggccccaaaaagattgtgggtgttttctacaaagcaaatgaatatgctgaaatgaaccccaactttttgggctgtgcagaaaatgccttggggatacgtgaatggttagagtctaaaggtcatcagtacatagtcactcctgacaaagaaggaccagattgtgagcttgagaaacacattcctgatctccatgtgttgatttcgaccccttttcatcctgcctatgtcacggctgaaaggatcaagaaggcaaaaaatctacaacttctgctgacagctggaattggatcagatcatgttgatctgaaagctgctgctgctgctggattgacagtagcagaggtcactggaagcaatactgtctcagttgcggaagatgaactgatgcgaatcttaattcttgtccgaaatttcttacctggacatcatcaggttatcaatggggagtggaatgttgctgcaattgcgcacagagcttatgatttg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0236E02-u8qcS/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0236E02.1" temp_strand="+" temp_description="C02HBa0236E02.1  AC215430.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0236E02 sequenced_by:kribb upload_account_name:korea">
        <position start="65241" stop="68387"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="65541" g_stop="65689" g_length="149"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="149" r_length="149" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="65690" i_stop="66849" i_length="1160">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="66850" g_stop="67021" g_length="172"/>
          <reference_exon_boundary r_type="cDNA" r_start="150" r_stop="321" r_length="172" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="67022" i_stop="67764" i_length="743">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="0.987" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="67765" g_stop="68087" g_length="323"/>
          <reference_exon_boundary r_type="cDNA" r_start="322" r_stop="644" r_length="323" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0236E02.1" gen_strand="+" ref_id="SGN-E202311" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>644</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0236E02.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E202311" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="65541" e_stop="65689"/>
          <exon e_start="66850" e_stop="67021"/>
          <exon e_start="67765" e_stop="68087"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGAGTTTATTCTTCTCTCTGTTTTTAGTAAGTACGAAACCCTTTTCTGTAAATCCAAAAAAAATTCCGATGGCGATGAGGCGTGTAGCTTCTACAGCAGCTCGTGCTATTGCTTCACCTTCATCCTTAGTTTTTACCAGAGAACTTCAGGTAACTAGCCATTTCTCCTCAATAGCCACTTTTTGTTGCTTTTGTTTTATATGACCTAGTTTTCGCCCTTTGATGAATTATCGGAAACCGGCACGGATCAACTCCGATTTTTCGAGAATCAAGTGAGTTGGAGATTGGAACAGAGGAAACTAAAGGAATTTAACCGTGTAAAGGAAAAAATTAAACACACTGTATTTGGTGCTCTACCCCTCGTCTCTTCTTTTTGGCTTTCCCCGTACTCTACACACCAAATGAAATGGCTCGGATATGAAAGGACTAATAACTTTTCAGTTTTCATTACTGCGTCCTTTTTTAAGCTTTCAGTTTTAATTTGCGTGAATATACCTAATTTTTATTAGGGTAGAGTTATATGTTTCAAATTAAATTGCTACCAAGTTAAATTTAAGAATGTTACATAAATTTAGAGACGGCAAGTTTATATACCAAGAAGGGTACTCCTTCATCCACAGAGAAACGGTGTCCAGTTCGAGTATGGGCGTGAATCTAGATATAGTTAATTCCAATGCAGATATCAGACATCGAGTGAGGAAAAAAAAGATTTTATTAATTTGTTATTTTTAGGTTGCTTTTCCTTTAACTGAAAATCTAACCCGGCAGGACCACAACAGTTCTTTTCCGATCATTACTAATGATACTTGATTTTCACGTGCGATTTCTGATATTTTTATACGGAGTAGGTGAAGAGTGAAATGTTTCACGGGTCTCAAGGACAATGGCAGCAGTGCTTCATTTTTTTTTGCATCTTCACGTGCTATATTATTACTTTGTTTATACTAGTTCGACTTGGAAAATCTTTTCATATTCAGTTGTCTGGGGAATAAATAAGATATTTCTTATTTTTTGATTAAAAAAAGAAGAAGATATTTCTTATTTAAAGAAGTGACAAATTGTACTAACTCATTTACCATGCCTAATATATTATATGTGACAATGATGATTTTTTTTAACTATTAATTGTTAGTTTGGACAAAAATGATCAAAGCAAGTATATTGAATAATGCTTATTTCTTGCCAACTGGTGCATCTACGAGATTATAGGAGTTGGATTATAATTTTAGCACATCCAGCATGCTTATATGACCTTAAAATATTCATGTATATTCTGTCCACTCACCTTTTATTTCTTCATTATTTTACAGGCTTCCCCTGGCCCCAAAAAGATTGTGGGTGTTTTCTACAAAGCAAATGAATATGCTGAAATGAACCCCAACTTTTTGGGCTGTGCAGAAAATGCCTTGGGGATACGTGAATGGTTAGAGTCTAAAGGTCATCAGTACATAGTCACTCCTGACAAAGAAGGACCAGATTGTGGTTAGTTCCTGCTAATCTATAATCTCTCATGTTCTATCCATTATCCCACTGAAGCCTATGCATTTCTAAAGATAATTTCTTTACCCTTCATGCTTGTACAACTAAACACATCTTAAAAGGAGTATTTTTGCATTTAAAACATGCATATATGTGCTGAAGTTTTTTAAAAATATATGGCTCACGTGAGGAGAATATAACGGTCATAGCAGGAACATTTATTTAGATAAAGAGCAAAGCAAAGTAAACAATATTTGCTTTGTTAGTGTTGGTCCTTTGCTGCTAGTGAATTATGATCAGGACATTGTGAGGTAGTTTCTTGCAGGAGGGAAAAAAAGAGTGTATTTTACCTTGATATACAGGTGTGCATTTGCAAAACGTCTATACTTCAGGACTCAGGTGTAAGTTGTACTAGTTTGATAAGACTATGGCTAAATTTTGTAATTTAAACAAGGATTTATCAAAGTCGCAGGGGCTTGTTTAGTTGTTGAGTAGAGTGCACACATGGATGCTTTAGTGATTTTCTGATGGATGACATGCTTAGTGTAAATCCTTGCTTATTAGTATCTTTTATCATGAGAAAGAATGGTGCCCTAGTCTGACACACAAACTACTCTGTGTCTTAGTTTTTCACTGTTGAATCCTTTACTATGCTCTATGCAAAGAAATTTCTCCTGAGCTAAAGTTTTTGAGTGTGTCCATCTATAATAGCTTCTTTTTTTTTTCCCATGACTTTCTCTCTGCAGAGCTTGAGAAACACATTCCTGATCTCCATGTGTTGATTTCGACCCCTTTTCATCCTGCCTATGTCACGGCTGAAAGGATCAAGAAGGCAAAAAATCTACAACTTCTGCTGACAGCTGGAATTGGATCAGATCATGTTGATCTGAAAGCTGCTGCTGCTGCTGGATTGACAGTAGCAGAGGTCACTGGAAGCAATACTGTCTCAGTTGCGGAAGATGAACTGATGCGAATCTTAATTCTTGTCCGAAATTTCTTACCTGGACATCATCAGGTTATCAATGGGGAGTGGAATGTTGCTGCAATTGCGCACAGAGCTTATGATTTG</genome_strand>
        <mrna_strand>GGAGTTTATTCTTCTCTCTGTTTTTAGTAAGTACGAAACCCTTTTCTGTAAATCCAAAAAAAATTCCGATGGCGATGAGGCGTGTAGCTTCTACAGCAGCTCGTGCTATTGCTTCACCTTCATCCTTAGTTTTTACCAGAGAACTTCAG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCTTCCCCTGGCCCCAAAAAGATTGTGGGTGTTTTCTACAAAGCAAATGAATATGCTGAAATGAACCCCAACTTTTTGGGCTGTGCAGAAAATGCCTTGGGGATACGTGAATGGTTAGAGTCTAAAGGTCATCAGTACATAGTCACTCCTGACAAAGAAGGACCAGATTGTG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGCTTGAGAAACACATTCCTGATCTCCATGTGTTGATTTCGACCCCTTTTCATCCTGCCTATGTCACGGCTGAAAGGATCAAGAAGGCAAAAAATCTACAACTTCTGCTGACAGCTGGAATTGGATCAGATCATGTTGATCTGAAAGCTGCTGCTGCTGCTGGATTGACAGTAGCAGAGGTCACTGGAAGCAATACTGTCTCAGTTGCGGAAGATGAACTGATGCGAATCTTAATTCTTGTCCGAAATTTCTTACCTGGACATCATCAGGTTATCAATGGGGAGTGGAATGTTGCTGCAATTGCGCACAGAGCTTATGATTTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0236E02-u8qcS/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E213170" ref_strand="+" ref_description="SGN-E213170 [cLEC-72-K12]">
      <seq>ggagtttattcttctctctgtttttagtaagtacgaaacccttttctgtaaatccaaaaaaaattccgatggcgatgaggcgtgtagcttctacagcagctcgtgctattgcttcaccttcatccttagtttttaccagagaacttcaggcttcccctggccccaaaaagattgtgggtgttttctacaaagcaaatgaatatgctgaaatgaaccccaactttttgggctgtgcagaaaatgccttggggatacgtgaatggttagagtctaaaggtcatcagtacatagtcactcctgacaaagaaggaccagattgtgagcttgagaaacacattcctgatctccatgtgttgatttcgaccccttttcatcctgcctatgtcacggctgaaaggatcaagaaggcaaaaaatctacaacttctgctgacagctggaattggatcagatcatgttgatctgaaagctgctgctgctgctggattgacagtancagaagtcactggaagcaatactgtctcagttgcggaagatgaactgatgcgaatcttaattcttgtccaaaatttcttacctggacatcatcagg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0236E02-u8qcS/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0236E02.1" temp_strand="+" temp_description="C02HBa0236E02.1  AC215430.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0236E02 sequenced_by:kribb upload_account_name:korea">
        <position start="65241" stop="68334"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="65541" g_stop="65689" g_length="149"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="149" r_length="149" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="65690" i_stop="66849" i_length="1160">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="66850" g_stop="67021" g_length="172"/>
          <reference_exon_boundary r_type="cDNA" r_start="150" r_stop="321" r_length="172" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="67022" i_stop="67764" i_length="743">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="0.987" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="67765" g_stop="68034" g_length="270"/>
          <reference_exon_boundary r_type="cDNA" r_start="322" r_stop="591" r_length="270" r_score="0.989"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0236E02.1" gen_strand="+" ref_id="SGN-E213170" ref_strand="+">
        <total_alignment_score>0.995</total_alignment_score>
        <cumulative_length_of_scored_exons>591</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0236E02.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E213170" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="65541" e_stop="65689"/>
          <exon e_start="66850" e_stop="67021"/>
          <exon e_start="67765" e_stop="68034"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGAGTTTATTCTTCTCTCTGTTTTTAGTAAGTACGAAACCCTTTTCTGTAAATCCAAAAAAAATTCCGATGGCGATGAGGCGTGTAGCTTCTACAGCAGCTCGTGCTATTGCTTCACCTTCATCCTTAGTTTTTACCAGAGAACTTCAGGTAACTAGCCATTTCTCCTCAATAGCCACTTTTTGTTGCTTTTGTTTTATATGACCTAGTTTTCGCCCTTTGATGAATTATCGGAAACCGGCACGGATCAACTCCGATTTTTCGAGAATCAAGTGAGTTGGAGATTGGAACAGAGGAAACTAAAGGAATTTAACCGTGTAAAGGAAAAAATTAAACACACTGTATTTGGTGCTCTACCCCTCGTCTCTTCTTTTTGGCTTTCCCCGTACTCTACACACCAAATGAAATGGCTCGGATATGAAAGGACTAATAACTTTTCAGTTTTCATTACTGCGTCCTTTTTTAAGCTTTCAGTTTTAATTTGCGTGAATATACCTAATTTTTATTAGGGTAGAGTTATATGTTTCAAATTAAATTGCTACCAAGTTAAATTTAAGAATGTTACATAAATTTAGAGACGGCAAGTTTATATACCAAGAAGGGTACTCCTTCATCCACAGAGAAACGGTGTCCAGTTCGAGTATGGGCGTGAATCTAGATATAGTTAATTCCAATGCAGATATCAGACATCGAGTGAGGAAAAAAAAGATTTTATTAATTTGTTATTTTTAGGTTGCTTTTCCTTTAACTGAAAATCTAACCCGGCAGGACCACAACAGTTCTTTTCCGATCATTACTAATGATACTTGATTTTCACGTGCGATTTCTGATATTTTTATACGGAGTAGGTGAAGAGTGAAATGTTTCACGGGTCTCAAGGACAATGGCAGCAGTGCTTCATTTTTTTTTGCATCTTCACGTGCTATATTATTACTTTGTTTATACTAGTTCGACTTGGAAAATCTTTTCATATTCAGTTGTCTGGGGAATAAATAAGATATTTCTTATTTTTTGATTAAAAAAAGAAGAAGATATTTCTTATTTAAAGAAGTGACAAATTGTACTAACTCATTTACCATGCCTAATATATTATATGTGACAATGATGATTTTTTTTAACTATTAATTGTTAGTTTGGACAAAAATGATCAAAGCAAGTATATTGAATAATGCTTATTTCTTGCCAACTGGTGCATCTACGAGATTATAGGAGTTGGATTATAATTTTAGCACATCCAGCATGCTTATATGACCTTAAAATATTCATGTATATTCTGTCCACTCACCTTTTATTTCTTCATTATTTTACAGGCTTCCCCTGGCCCCAAAAAGATTGTGGGTGTTTTCTACAAAGCAAATGAATATGCTGAAATGAACCCCAACTTTTTGGGCTGTGCAGAAAATGCCTTGGGGATACGTGAATGGTTAGAGTCTAAAGGTCATCAGTACATAGTCACTCCTGACAAAGAAGGACCAGATTGTGGTTAGTTCCTGCTAATCTATAATCTCTCATGTTCTATCCATTATCCCACTGAAGCCTATGCATTTCTAAAGATAATTTCTTTACCCTTCATGCTTGTACAACTAAACACATCTTAAAAGGAGTATTTTTGCATTTAAAACATGCATATATGTGCTGAAGTTTTTTAAAAATATATGGCTCACGTGAGGAGAATATAACGGTCATAGCAGGAACATTTATTTAGATAAAGAGCAAAGCAAAGTAAACAATATTTGCTTTGTTAGTGTTGGTCCTTTGCTGCTAGTGAATTATGATCAGGACATTGTGAGGTAGTTTCTTGCAGGAGGGAAAAAAAGAGTGTATTTTACCTTGATATACAGGTGTGCATTTGCAAAACGTCTATACTTCAGGACTCAGGTGTAAGTTGTACTAGTTTGATAAGACTATGGCTAAATTTTGTAATTTAAACAAGGATTTATCAAAGTCGCAGGGGCTTGTTTAGTTGTTGAGTAGAGTGCACACATGGATGCTTTAGTGATTTTCTGATGGATGACATGCTTAGTGTAAATCCTTGCTTATTAGTATCTTTTATCATGAGAAAGAATGGTGCCCTAGTCTGACACACAAACTACTCTGTGTCTTAGTTTTTCACTGTTGAATCCTTTACTATGCTCTATGCAAAGAAATTTCTCCTGAGCTAAAGTTTTTGAGTGTGTCCATCTATAATAGCTTCTTTTTTTTTTCCCATGACTTTCTCTCTGCAGAGCTTGAGAAACACATTCCTGATCTCCATGTGTTGATTTCGACCCCTTTTCATCCTGCCTATGTCACGGCTGAAAGGATCAAGAAGGCAAAAAATCTACAACTTCTGCTGACAGCTGGAATTGGATCAGATCATGTTGATCTGAAAGCTGCTGCTGCTGCTGGATTGACAGTAGCAGAGGTCACTGGAAGCAATACTGTCTCAGTTGCGGAAGATGAACTGATGCGAATCTTAATTCTTGTCCGAAATTTCTTACCTGGACATCATCAGG</genome_strand>
        <mrna_strand>GGAGTTTATTCTTCTCTCTGTTTTTAGTAAGTACGAAACCCTTTTCTGTAAATCCAAAAAAAATTCCGATGGCGATGAGGCGTGTAGCTTCTACAGCAGCTCGTGCTATTGCTTCACCTTCATCCTTAGTTTTTACCAGAGAACTTCAG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCTTCCCCTGGCCCCAAAAAGATTGTGGGTGTTTTCTACAAAGCAAATGAATATGCTGAAATGAACCCCAACTTTTTGGGCTGTGCAGAAAATGCCTTGGGGATACGTGAATGGTTAGAGTCTAAAGGTCATCAGTACATAGTCACTCCTGACAAAGAAGGACCAGATTGTG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGCTTGAGAAACACATTCCTGATCTCCATGTGTTGATTTCGACCCCTTTTCATCCTGCCTATGTCACGGCTGAAAGGATCAAGAAGGCAAAAAATCTACAACTTCTGCTGACAGCTGGAATTGGATCAGATCATGTTGATCTGAAAGCTGCTGCTGCTGCTGGATTGACAGTANCAGAAGTCACTGGAAGCAATACTGTCTCAGTTGCGGAAGATGAACTGATGCGAATCTTAATTCTTGTCCAAAATTTCTTACCTGGACATCATCAGG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0236E02-u8qcS/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E299312" ref_strand="+" ref_description="SGN-E299312 [cLET-43-D6]">
      <seq>ggagtttattcttctctctgtttttagtaagtacgaaacccttttctgtaaatccaaaaaaaattccgatggcgatgaggcgtgtagcttctacagcagctcgtgctattgcttcaccttcatccttagtttttaccagagaacttcaggcttcccctggccccaaaaagattgtgggtgttttctacaaagcaaatgaatatgctgaaatgaaccccaactttttgggctgtgcagaaaatgccttggggatacgtgaatggttagagtctaaaggtcatcagtacatagtcactcctgacaaagaaggaccagattgtgagcttgagaaacacattcctgatctccatgtgttgatttcgaccccttttcatcctgcctatgtcacggctgataggatcaagaaggcaaaaaatctacaacttctgctgacagctggaattggatcagatcatgttgatctgaaagctgctgctgctgctggattgacagtagcagaggtcactggaagcaatactgtctcagttgcggaagatgaactgatgcgaatcttaattcttgtccgaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0236E02-u8qcS/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0236E02.1" temp_strand="+" temp_description="C02HBa0236E02.1  AC215430.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0236E02 sequenced_by:kribb upload_account_name:korea">
        <position start="65241" stop="68311"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="65541" g_stop="65689" g_length="149"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="149" r_length="149" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="65690" i_stop="66849" i_length="1160">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="66850" g_stop="67021" g_length="172"/>
          <reference_exon_boundary r_type="cDNA" r_start="150" r_stop="321" r_length="172" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="67022" i_stop="67764" i_length="743">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="0.987" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="67765" g_stop="68011" g_length="247"/>
          <reference_exon_boundary r_type="cDNA" r_start="322" r_stop="568" r_length="247" r_score="0.996"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0236E02.1" gen_strand="+" ref_id="SGN-E299312" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>568</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0236E02.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E299312" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="65541" e_stop="65689"/>
          <exon e_start="66850" e_stop="67021"/>
          <exon e_start="67765" e_stop="68011"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGAGTTTATTCTTCTCTCTGTTTTTAGTAAGTACGAAACCCTTTTCTGTAAATCCAAAAAAAATTCCGATGGCGATGAGGCGTGTAGCTTCTACAGCAGCTCGTGCTATTGCTTCACCTTCATCCTTAGTTTTTACCAGAGAACTTCAGGTAACTAGCCATTTCTCCTCAATAGCCACTTTTTGTTGCTTTTGTTTTATATGACCTAGTTTTCGCCCTTTGATGAATTATCGGAAACCGGCACGGATCAACTCCGATTTTTCGAGAATCAAGTGAGTTGGAGATTGGAACAGAGGAAACTAAAGGAATTTAACCGTGTAAAGGAAAAAATTAAACACACTGTATTTGGTGCTCTACCCCTCGTCTCTTCTTTTTGGCTTTCCCCGTACTCTACACACCAAATGAAATGGCTCGGATATGAAAGGACTAATAACTTTTCAGTTTTCATTACTGCGTCCTTTTTTAAGCTTTCAGTTTTAATTTGCGTGAATATACCTAATTTTTATTAGGGTAGAGTTATATGTTTCAAATTAAATTGCTACCAAGTTAAATTTAAGAATGTTACATAAATTTAGAGACGGCAAGTTTATATACCAAGAAGGGTACTCCTTCATCCACAGAGAAACGGTGTCCAGTTCGAGTATGGGCGTGAATCTAGATATAGTTAATTCCAATGCAGATATCAGACATCGAGTGAGGAAAAAAAAGATTTTATTAATTTGTTATTTTTAGGTTGCTTTTCCTTTAACTGAAAATCTAACCCGGCAGGACCACAACAGTTCTTTTCCGATCATTACTAATGATACTTGATTTTCACGTGCGATTTCTGATATTTTTATACGGAGTAGGTGAAGAGTGAAATGTTTCACGGGTCTCAAGGACAATGGCAGCAGTGCTTCATTTTTTTTTGCATCTTCACGTGCTATATTATTACTTTGTTTATACTAGTTCGACTTGGAAAATCTTTTCATATTCAGTTGTCTGGGGAATAAATAAGATATTTCTTATTTTTTGATTAAAAAAAGAAGAAGATATTTCTTATTTAAAGAAGTGACAAATTGTACTAACTCATTTACCATGCCTAATATATTATATGTGACAATGATGATTTTTTTTAACTATTAATTGTTAGTTTGGACAAAAATGATCAAAGCAAGTATATTGAATAATGCTTATTTCTTGCCAACTGGTGCATCTACGAGATTATAGGAGTTGGATTATAATTTTAGCACATCCAGCATGCTTATATGACCTTAAAATATTCATGTATATTCTGTCCACTCACCTTTTATTTCTTCATTATTTTACAGGCTTCCCCTGGCCCCAAAAAGATTGTGGGTGTTTTCTACAAAGCAAATGAATATGCTGAAATGAACCCCAACTTTTTGGGCTGTGCAGAAAATGCCTTGGGGATACGTGAATGGTTAGAGTCTAAAGGTCATCAGTACATAGTCACTCCTGACAAAGAAGGACCAGATTGTGGTTAGTTCCTGCTAATCTATAATCTCTCATGTTCTATCCATTATCCCACTGAAGCCTATGCATTTCTAAAGATAATTTCTTTACCCTTCATGCTTGTACAACTAAACACATCTTAAAAGGAGTATTTTTGCATTTAAAACATGCATATATGTGCTGAAGTTTTTTAAAAATATATGGCTCACGTGAGGAGAATATAACGGTCATAGCAGGAACATTTATTTAGATAAAGAGCAAAGCAAAGTAAACAATATTTGCTTTGTTAGTGTTGGTCCTTTGCTGCTAGTGAATTATGATCAGGACATTGTGAGGTAGTTTCTTGCAGGAGGGAAAAAAAGAGTGTATTTTACCTTGATATACAGGTGTGCATTTGCAAAACGTCTATACTTCAGGACTCAGGTGTAAGTTGTACTAGTTTGATAAGACTATGGCTAAATTTTGTAATTTAAACAAGGATTTATCAAAGTCGCAGGGGCTTGTTTAGTTGTTGAGTAGAGTGCACACATGGATGCTTTAGTGATTTTCTGATGGATGACATGCTTAGTGTAAATCCTTGCTTATTAGTATCTTTTATCATGAGAAAGAATGGTGCCCTAGTCTGACACACAAACTACTCTGTGTCTTAGTTTTTCACTGTTGAATCCTTTACTATGCTCTATGCAAAGAAATTTCTCCTGAGCTAAAGTTTTTGAGTGTGTCCATCTATAATAGCTTCTTTTTTTTTTCCCATGACTTTCTCTCTGCAGAGCTTGAGAAACACATTCCTGATCTCCATGTGTTGATTTCGACCCCTTTTCATCCTGCCTATGTCACGGCTGAAAGGATCAAGAAGGCAAAAAATCTACAACTTCTGCTGACAGCTGGAATTGGATCAGATCATGTTGATCTGAAAGCTGCTGCTGCTGCTGGATTGACAGTAGCAGAGGTCACTGGAAGCAATACTGTCTCAGTTGCGGAAGATGAACTGATGCGAATCTTAATTCTTGTCCGAAA</genome_strand>
        <mrna_strand>GGAGTTTATTCTTCTCTCTGTTTTTAGTAAGTACGAAACCCTTTTCTGTAAATCCAAAAAAAATTCCGATGGCGATGAGGCGTGTAGCTTCTACAGCAGCTCGTGCTATTGCTTCACCTTCATCCTTAGTTTTTACCAGAGAACTTCAG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCTTCCCCTGGCCCCAAAAAGATTGTGGGTGTTTTCTACAAAGCAAATGAATATGCTGAAATGAACCCCAACTTTTTGGGCTGTGCAGAAAATGCCTTGGGGATACGTGAATGGTTAGAGTCTAAAGGTCATCAGTACATAGTCACTCCTGACAAAGAAGGACCAGATTGTG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGCTTGAGAAACACATTCCTGATCTCCATGTGTTGATTTCGACCCCTTTTCATCCTGCCTATGTCACGGCTGATAGGATCAAGAAGGCAAAAAATCTACAACTTCTGCTGACAGCTGGAATTGGATCAGATCATGTTGATCTGAAAGCTGCTGCTGCTGCTGGATTGACAGTAGCAGAGGTCACTGGAAGCAATACTGTCTCAGTTGCGGAAGATGAACTGATGCGAATCTTAATTCTTGTCCGAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0236E02-u8qcS/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E403048" ref_strand="+" ref_description="SGN-E403048 [PPC-9-B1]">
      <seq>ggagtgtattcttctctctgtttttaccaagtacaaaaccctttgctgtaaatccaaaaaattccgatggcgatgagtcgtgtagcttctacagcagctcgtgctattacttcaccttcatccttagtttttaccagagaacttcaggcttcccctggccccaaaaagattgtgggtgttttctacaaagcaaatgaatatgctgaaatgaaccccaactttttgggctgtgcagaaaatgccttggggatacgtgaatggttagaatctaaaggtcatcagtacatagtcactcctgacaaagaaggaccagattgtgagcttgagaaacacattcctgatctccatgtgttgatttcgaccccttttcatcctgcctatgtcacggctgaaaggatcaagaaggcaaaaaatctacaactactgctgacagctggaattggatcagatcatgttgatctgaaagctgctgctgctgctggattgacagtagcagaggtcactggaagcaatactgtctcagttgcggaagatgaactgatgcgaatcttaattcttg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0236E02-u8qcS/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0236E02.1" temp_strand="+" temp_description="C02HBa0236E02.1  AC215430.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0236E02 sequenced_by:kribb upload_account_name:korea">
        <position start="65241" stop="68304"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="65541" g_stop="65689" g_length="149"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="147" r_length="147" r_score="0.940"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="65690" i_stop="66849" i_length="1160">
            <donor d_prob="1.000" d_score="0.98"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="66850" g_stop="67021" g_length="172"/>
          <reference_exon_boundary r_type="cDNA" r_start="148" r_stop="319" r_length="172" r_score="0.994"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="67022" i_stop="67764" i_length="743">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="0.987" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="67765" g_stop="68004" g_length="240"/>
          <reference_exon_boundary r_type="cDNA" r_start="320" r_stop="559" r_length="240" r_score="0.996"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0236E02.1" gen_strand="+" ref_id="SGN-E403048" ref_strand="+">
        <total_alignment_score>0.980</total_alignment_score>
        <cumulative_length_of_scored_exons>561</cumulative_length_of_scored_exons>
        <coverage percentage="1.004" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0236E02.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E403048" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="65541" e_stop="65689"/>
          <exon e_start="66850" e_stop="67021"/>
          <exon e_start="67765" e_stop="68004"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGAGTTTATTCTTCTCTCTGTTTTTAGTAAGTACGAAACCCTTTTCTGTAAATCCAAAAAAAATTCCGATGGCGATGAGGCGTGTAGCTTCTACAGCAGCTCGTGCTATTGCTTCACCTTCATCCTTAGTTTTTACCAGAGAACTTCAGGTAACTAGCCATTTCTCCTCAATAGCCACTTTTTGTTGCTTTTGTTTTATATGACCTAGTTTTCGCCCTTTGATGAATTATCGGAAACCGGCACGGATCAACTCCGATTTTTCGAGAATCAAGTGAGTTGGAGATTGGAACAGAGGAAACTAAAGGAATTTAACCGTGTAAAGGAAAAAATTAAACACACTGTATTTGGTGCTCTACCCCTCGTCTCTTCTTTTTGGCTTTCCCCGTACTCTACACACCAAATGAAATGGCTCGGATATGAAAGGACTAATAACTTTTCAGTTTTCATTACTGCGTCCTTTTTTAAGCTTTCAGTTTTAATTTGCGTGAATATACCTAATTTTTATTAGGGTAGAGTTATATGTTTCAAATTAAATTGCTACCAAGTTAAATTTAAGAATGTTACATAAATTTAGAGACGGCAAGTTTATATACCAAGAAGGGTACTCCTTCATCCACAGAGAAACGGTGTCCAGTTCGAGTATGGGCGTGAATCTAGATATAGTTAATTCCAATGCAGATATCAGACATCGAGTGAGGAAAAAAAAGATTTTATTAATTTGTTATTTTTAGGTTGCTTTTCCTTTAACTGAAAATCTAACCCGGCAGGACCACAACAGTTCTTTTCCGATCATTACTAATGATACTTGATTTTCACGTGCGATTTCTGATATTTTTATACGGAGTAGGTGAAGAGTGAAATGTTTCACGGGTCTCAAGGACAATGGCAGCAGTGCTTCATTTTTTTTTGCATCTTCACGTGCTATATTATTACTTTGTTTATACTAGTTCGACTTGGAAAATCTTTTCATATTCAGTTGTCTGGGGAATAAATAAGATATTTCTTATTTTTTGATTAAAAAAAGAAGAAGATATTTCTTATTTAAAGAAGTGACAAATTGTACTAACTCATTTACCATGCCTAATATATTATATGTGACAATGATGATTTTTTTTAACTATTAATTGTTAGTTTGGACAAAAATGATCAAAGCAAGTATATTGAATAATGCTTATTTCTTGCCAACTGGTGCATCTACGAGATTATAGGAGTTGGATTATAATTTTAGCACATCCAGCATGCTTATATGACCTTAAAATATTCATGTATATTCTGTCCACTCACCTTTTATTTCTTCATTATTTTACAGGCTTCCCCTGGCCCCAAAAAGATTGTGGGTGTTTTCTACAAAGCAAATGAATATGCTGAAATGAACCCCAACTTTTTGGGCTGTGCAGAAAATGCCTTGGGGATACGTGAATGGTTAGAGTCTAAAGGTCATCAGTACATAGTCACTCCTGACAAAGAAGGACCAGATTGTGGTTAGTTCCTGCTAATCTATAATCTCTCATGTTCTATCCATTATCCCACTGAAGCCTATGCATTTCTAAAGATAATTTCTTTACCCTTCATGCTTGTACAACTAAACACATCTTAAAAGGAGTATTTTTGCATTTAAAACATGCATATATGTGCTGAAGTTTTTTAAAAATATATGGCTCACGTGAGGAGAATATAACGGTCATAGCAGGAACATTTATTTAGATAAAGAGCAAAGCAAAGTAAACAATATTTGCTTTGTTAGTGTTGGTCCTTTGCTGCTAGTGAATTATGATCAGGACATTGTGAGGTAGTTTCTTGCAGGAGGGAAAAAAAGAGTGTATTTTACCTTGATATACAGGTGTGCATTTGCAAAACGTCTATACTTCAGGACTCAGGTGTAAGTTGTACTAGTTTGATAAGACTATGGCTAAATTTTGTAATTTAAACAAGGATTTATCAAAGTCGCAGGGGCTTGTTTAGTTGTTGAGTAGAGTGCACACATGGATGCTTTAGTGATTTTCTGATGGATGACATGCTTAGTGTAAATCCTTGCTTATTAGTATCTTTTATCATGAGAAAGAATGGTGCCCTAGTCTGACACACAAACTACTCTGTGTCTTAGTTTTTCACTGTTGAATCCTTTACTATGCTCTATGCAAAGAAATTTCTCCTGAGCTAAAGTTTTTGAGTGTGTCCATCTATAATAGCTTCTTTTTTTTTTCCCATGACTTTCTCTCTGCAGAGCTTGAGAAACACATTCCTGATCTCCATGTGTTGATTTCGACCCCTTTTCATCCTGCCTATGTCACGGCTGAAAGGATCAAGAAGGCAAAAAATCTACAACTTCTGCTGACAGCTGGAATTGGATCAGATCATGTTGATCTGAAAGCTGCTGCTGCTGCTGGATTGACAGTAGCAGAGGTCACTGGAAGCAATACTGTCTCAGTTGCGGAAGATGAACTGATGCGAATCTTAATTCTTG</genome_strand>
        <mrna_strand>GGAGTGTATTCTTCTCTCTGTTTTTACCAAGTACAAAACCCTTTGCTGTAAATCC--AAAAAATTCCGATGGCGATGAGTCGTGTAGCTTCTACAGCAGCTCGTGCTATTACTTCACCTTCATCCTTAGTTTTTACCAGAGAACTTCAG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCTTCCCCTGGCCCCAAAAAGATTGTGGGTGTTTTCTACAAAGCAAATGAATATGCTGAAATGAACCCCAACTTTTTGGGCTGTGCAGAAAATGCCTTGGGGATACGTGAATGGTTAGAATCTAAAGGTCATCAGTACATAGTCACTCCTGACAAAGAAGGACCAGATTGTG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGCTTGAGAAACACATTCCTGATCTCCATGTGTTGATTTCGACCCCTTTTCATCCTGCCTATGTCACGGCTGAAAGGATCAAGAAGGCAAAAAATCTACAACTACTGCTGACAGCTGGAATTGGATCAGATCATGTTGATCTGAAAGCTGCTGCTGCTGCTGGATTGACAGTAGCAGAGGTCACTGGAAGCAATACTGTCTCAGTTGCGGAAGATGAACTGATGCGAATCTTAATTCTTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0236E02-u8qcS/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E270719" ref_strand="+" ref_description="SGN-E270719 [cLEM-6-J15]">
      <seq>ggagtttattcttctctctgtttttagtaagtacgaaacccttttctgtaaatccaaaaaaaattccgatggcgatgaggcgtgtagcttctacagcagctcgtgctattgcttcaccttcatccttagtttttaccagagaacttcaagcttcccctggccccaaaaagattgtgggtgttttctacaaagcaaatgaatatgctgaaatgaaccccaactttttgggctgtgcagaaaatgccttggggatacgtgaatggttagagtctaaaggtcatcagtacatagtcactcctgacaaagaaagaccagattgtgagcttgagaaacacattcctgatctccatgtgttgatttcgaccccttttcatcctgcctatgtcacggctgaaaggatcaagaaagcaaaaaatctacaacttctgctgacagctggaattggatcagatcatgttgatctg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0236E02-u8qcS/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0236E02.1" temp_strand="+" temp_description="C02HBa0236E02.1  AC215430.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0236E02 sequenced_by:kribb upload_account_name:korea">
        <position start="65241" stop="68207"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="65541" g_stop="65689" g_length="149"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="149" r_length="149" r_score="0.993"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="65690" i_stop="66849" i_length="1160">
            <donor d_prob="1.000" d_score="0.98"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="66850" g_stop="67021" g_length="172"/>
          <reference_exon_boundary r_type="cDNA" r_start="150" r_stop="321" r_length="172" r_score="0.994"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="67022" i_stop="67764" i_length="743">
            <donor d_prob="0.994" d_score="0.98"/>
            <acceptor a_prob="0.987" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="67765" g_stop="67907" g_length="143"/>
          <reference_exon_boundary r_type="cDNA" r_start="322" r_stop="464" r_length="143" r_score="0.993"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0236E02.1" gen_strand="+" ref_id="SGN-E270719" ref_strand="+">
        <total_alignment_score>0.994</total_alignment_score>
        <cumulative_length_of_scored_exons>464</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0236E02.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E270719" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="65541" e_stop="65689"/>
          <exon e_start="66850" e_stop="67021"/>
          <exon e_start="67765" e_stop="67907"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGAGTTTATTCTTCTCTCTGTTTTTAGTAAGTACGAAACCCTTTTCTGTAAATCCAAAAAAAATTCCGATGGCGATGAGGCGTGTAGCTTCTACAGCAGCTCGTGCTATTGCTTCACCTTCATCCTTAGTTTTTACCAGAGAACTTCAGGTAACTAGCCATTTCTCCTCAATAGCCACTTTTTGTTGCTTTTGTTTTATATGACCTAGTTTTCGCCCTTTGATGAATTATCGGAAACCGGCACGGATCAACTCCGATTTTTCGAGAATCAAGTGAGTTGGAGATTGGAACAGAGGAAACTAAAGGAATTTAACCGTGTAAAGGAAAAAATTAAACACACTGTATTTGGTGCTCTACCCCTCGTCTCTTCTTTTTGGCTTTCCCCGTACTCTACACACCAAATGAAATGGCTCGGATATGAAAGGACTAATAACTTTTCAGTTTTCATTACTGCGTCCTTTTTTAAGCTTTCAGTTTTAATTTGCGTGAATATACCTAATTTTTATTAGGGTAGAGTTATATGTTTCAAATTAAATTGCTACCAAGTTAAATTTAAGAATGTTACATAAATTTAGAGACGGCAAGTTTATATACCAAGAAGGGTACTCCTTCATCCACAGAGAAACGGTGTCCAGTTCGAGTATGGGCGTGAATCTAGATATAGTTAATTCCAATGCAGATATCAGACATCGAGTGAGGAAAAAAAAGATTTTATTAATTTGTTATTTTTAGGTTGCTTTTCCTTTAACTGAAAATCTAACCCGGCAGGACCACAACAGTTCTTTTCCGATCATTACTAATGATACTTGATTTTCACGTGCGATTTCTGATATTTTTATACGGAGTAGGTGAAGAGTGAAATGTTTCACGGGTCTCAAGGACAATGGCAGCAGTGCTTCATTTTTTTTTGCATCTTCACGTGCTATATTATTACTTTGTTTATACTAGTTCGACTTGGAAAATCTTTTCATATTCAGTTGTCTGGGGAATAAATAAGATATTTCTTATTTTTTGATTAAAAAAAGAAGAAGATATTTCTTATTTAAAGAAGTGACAAATTGTACTAACTCATTTACCATGCCTAATATATTATATGTGACAATGATGATTTTTTTTAACTATTAATTGTTAGTTTGGACAAAAATGATCAAAGCAAGTATATTGAATAATGCTTATTTCTTGCCAACTGGTGCATCTACGAGATTATAGGAGTTGGATTATAATTTTAGCACATCCAGCATGCTTATATGACCTTAAAATATTCATGTATATTCTGTCCACTCACCTTTTATTTCTTCATTATTTTACAGGCTTCCCCTGGCCCCAAAAAGATTGTGGGTGTTTTCTACAAAGCAAATGAATATGCTGAAATGAACCCCAACTTTTTGGGCTGTGCAGAAAATGCCTTGGGGATACGTGAATGGTTAGAGTCTAAAGGTCATCAGTACATAGTCACTCCTGACAAAGAAGGACCAGATTGTGGTTAGTTCCTGCTAATCTATAATCTCTCATGTTCTATCCATTATCCCACTGAAGCCTATGCATTTCTAAAGATAATTTCTTTACCCTTCATGCTTGTACAACTAAACACATCTTAAAAGGAGTATTTTTGCATTTAAAACATGCATATATGTGCTGAAGTTTTTTAAAAATATATGGCTCACGTGAGGAGAATATAACGGTCATAGCAGGAACATTTATTTAGATAAAGAGCAAAGCAAAGTAAACAATATTTGCTTTGTTAGTGTTGGTCCTTTGCTGCTAGTGAATTATGATCAGGACATTGTGAGGTAGTTTCTTGCAGGAGGGAAAAAAAGAGTGTATTTTACCTTGATATACAGGTGTGCATTTGCAAAACGTCTATACTTCAGGACTCAGGTGTAAGTTGTACTAGTTTGATAAGACTATGGCTAAATTTTGTAATTTAAACAAGGATTTATCAAAGTCGCAGGGGCTTGTTTAGTTGTTGAGTAGAGTGCACACATGGATGCTTTAGTGATTTTCTGATGGATGACATGCTTAGTGTAAATCCTTGCTTATTAGTATCTTTTATCATGAGAAAGAATGGTGCCCTAGTCTGACACACAAACTACTCTGTGTCTTAGTTTTTCACTGTTGAATCCTTTACTATGCTCTATGCAAAGAAATTTCTCCTGAGCTAAAGTTTTTGAGTGTGTCCATCTATAATAGCTTCTTTTTTTTTTCCCATGACTTTCTCTCTGCAGAGCTTGAGAAACACATTCCTGATCTCCATGTGTTGATTTCGACCCCTTTTCATCCTGCCTATGTCACGGCTGAAAGGATCAAGAAGGCAAAAAATCTACAACTTCTGCTGACAGCTGGAATTGGATCAGATCATGTTGATCTG</genome_strand>
        <mrna_strand>GGAGTTTATTCTTCTCTCTGTTTTTAGTAAGTACGAAACCCTTTTCTGTAAATCCAAAAAAAATTCCGATGGCGATGAGGCGTGTAGCTTCTACAGCAGCTCGTGCTATTGCTTCACCTTCATCCTTAGTTTTTACCAGAGAACTTCAA........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCTTCCCCTGGCCCCAAAAAGATTGTGGGTGTTTTCTACAAAGCAAATGAATATGCTGAAATGAACCCCAACTTTTTGGGCTGTGCAGAAAATGCCTTGGGGATACGTGAATGGTTAGAGTCTAAAGGTCATCAGTACATAGTCACTCCTGACAAAGAAAGACCAGATTGTG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGCTTGAGAAACACATTCCTGATCTCCATGTGTTGATTTCGACCCCTTTTCATCCTGCCTATGTCACGGCTGAAAGGATCAAGAAAGCAAAAAATCTACAACTTCTGCTGACAGCTGGAATTGGATCAGATCATGTTGATCTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0236E02-u8qcS/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E325847" ref_strand="+" ref_description="SGN-E325847 [cTOC-12-B16]">
      <seq>gagtttattcttctctctgtttttagtaagtacgaaacggttttctgtaaatccaaaaaaaattccgatggcgatgaggcgtgtagcttctacagcagctcgtgctattgcttcaccttcatccttagtttttaccagagaacttcaggcttcccctggccccaaaaagattgtgggtgttttctacaaagcaaatgaatatgctgaaatgaaccccaactttttgggctgtgcagaaaatgccttggggatacgtgaatggttagagtctaaaggtcatcagtacatagtcactcctgacaaagaaggaccagattgtgagcttgagaaacacattcctgatctccatgtgttgatttcgaccccttttcatcctgcctatgtcacggctgaaaggatcaagaaggcaaaaaatctacaacttctgctgacagctggaattggatcagatcatgttgatctgaaagctgctgctgctgctggattgacagtagcagaggtcactggaagcaatact</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0236E02-u8qcS/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0236E02.1" temp_strand="+" temp_description="C02HBa0236E02.1  AC215430.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0236E02 sequenced_by:kribb upload_account_name:korea">
        <position start="65242" stop="68261"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="65542" g_stop="65689" g_length="148"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="148" r_length="148" r_score="0.986"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="65690" i_stop="66849" i_length="1160">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="66850" g_stop="67021" g_length="172"/>
          <reference_exon_boundary r_type="cDNA" r_start="149" r_stop="320" r_length="172" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="67022" i_stop="67764" i_length="743">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="0.987" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="67765" g_stop="67961" g_length="197"/>
          <reference_exon_boundary r_type="cDNA" r_start="321" r_stop="517" r_length="197" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0236E02.1" gen_strand="+" ref_id="SGN-E325847" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>517</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0236E02.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E325847" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="65542" e_stop="65689"/>
          <exon e_start="66850" e_stop="67021"/>
          <exon e_start="67765" e_stop="67961"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAGTTTATTCTTCTCTCTGTTTTTAGTAAGTACGAAACCCTTTTCTGTAAATCCAAAAAAAATTCCGATGGCGATGAGGCGTGTAGCTTCTACAGCAGCTCGTGCTATTGCTTCACCTTCATCCTTAGTTTTTACCAGAGAACTTCAGGTAACTAGCCATTTCTCCTCAATAGCCACTTTTTGTTGCTTTTGTTTTATATGACCTAGTTTTCGCCCTTTGATGAATTATCGGAAACCGGCACGGATCAACTCCGATTTTTCGAGAATCAAGTGAGTTGGAGATTGGAACAGAGGAAACTAAAGGAATTTAACCGTGTAAAGGAAAAAATTAAACACACTGTATTTGGTGCTCTACCCCTCGTCTCTTCTTTTTGGCTTTCCCCGTACTCTACACACCAAATGAAATGGCTCGGATATGAAAGGACTAATAACTTTTCAGTTTTCATTACTGCGTCCTTTTTTAAGCTTTCAGTTTTAATTTGCGTGAATATACCTAATTTTTATTAGGGTAGAGTTATATGTTTCAAATTAAATTGCTACCAAGTTAAATTTAAGAATGTTACATAAATTTAGAGACGGCAAGTTTATATACCAAGAAGGGTACTCCTTCATCCACAGAGAAACGGTGTCCAGTTCGAGTATGGGCGTGAATCTAGATATAGTTAATTCCAATGCAGATATCAGACATCGAGTGAGGAAAAAAAAGATTTTATTAATTTGTTATTTTTAGGTTGCTTTTCCTTTAACTGAAAATCTAACCCGGCAGGACCACAACAGTTCTTTTCCGATCATTACTAATGATACTTGATTTTCACGTGCGATTTCTGATATTTTTATACGGAGTAGGTGAAGAGTGAAATGTTTCACGGGTCTCAAGGACAATGGCAGCAGTGCTTCATTTTTTTTTGCATCTTCACGTGCTATATTATTACTTTGTTTATACTAGTTCGACTTGGAAAATCTTTTCATATTCAGTTGTCTGGGGAATAAATAAGATATTTCTTATTTTTTGATTAAAAAAAGAAGAAGATATTTCTTATTTAAAGAAGTGACAAATTGTACTAACTCATTTACCATGCCTAATATATTATATGTGACAATGATGATTTTTTTTAACTATTAATTGTTAGTTTGGACAAAAATGATCAAAGCAAGTATATTGAATAATGCTTATTTCTTGCCAACTGGTGCATCTACGAGATTATAGGAGTTGGATTATAATTTTAGCACATCCAGCATGCTTATATGACCTTAAAATATTCATGTATATTCTGTCCACTCACCTTTTATTTCTTCATTATTTTACAGGCTTCCCCTGGCCCCAAAAAGATTGTGGGTGTTTTCTACAAAGCAAATGAATATGCTGAAATGAACCCCAACTTTTTGGGCTGTGCAGAAAATGCCTTGGGGATACGTGAATGGTTAGAGTCTAAAGGTCATCAGTACATAGTCACTCCTGACAAAGAAGGACCAGATTGTGGTTAGTTCCTGCTAATCTATAATCTCTCATGTTCTATCCATTATCCCACTGAAGCCTATGCATTTCTAAAGATAATTTCTTTACCCTTCATGCTTGTACAACTAAACACATCTTAAAAGGAGTATTTTTGCATTTAAAACATGCATATATGTGCTGAAGTTTTTTAAAAATATATGGCTCACGTGAGGAGAATATAACGGTCATAGCAGGAACATTTATTTAGATAAAGAGCAAAGCAAAGTAAACAATATTTGCTTTGTTAGTGTTGGTCCTTTGCTGCTAGTGAATTATGATCAGGACATTGTGAGGTAGTTTCTTGCAGGAGGGAAAAAAAGAGTGTATTTTACCTTGATATACAGGTGTGCATTTGCAAAACGTCTATACTTCAGGACTCAGGTGTAAGTTGTACTAGTTTGATAAGACTATGGCTAAATTTTGTAATTTAAACAAGGATTTATCAAAGTCGCAGGGGCTTGTTTAGTTGTTGAGTAGAGTGCACACATGGATGCTTTAGTGATTTTCTGATGGATGACATGCTTAGTGTAAATCCTTGCTTATTAGTATCTTTTATCATGAGAAAGAATGGTGCCCTAGTCTGACACACAAACTACTCTGTGTCTTAGTTTTTCACTGTTGAATCCTTTACTATGCTCTATGCAAAGAAATTTCTCCTGAGCTAAAGTTTTTGAGTGTGTCCATCTATAATAGCTTCTTTTTTTTTTCCCATGACTTTCTCTCTGCAGAGCTTGAGAAACACATTCCTGATCTCCATGTGTTGATTTCGACCCCTTTTCATCCTGCCTATGTCACGGCTGAAAGGATCAAGAAGGCAAAAAATCTACAACTTCTGCTGACAGCTGGAATTGGATCAGATCATGTTGATCTGAAAGCTGCTGCTGCTGCTGGATTGACAGTAGCAGAGGTCACTGGAAGCAATACT</genome_strand>
        <mrna_strand>GAGTTTATTCTTCTCTCTGTTTTTAGTAAGTACGAAACGGTTTTCTGTAAATCCAAAAAAAATTCCGATGGCGATGAGGCGTGTAGCTTCTACAGCAGCTCGTGCTATTGCTTCACCTTCATCCTTAGTTTTTACCAGAGAACTTCAG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCTTCCCCTGGCCCCAAAAAGATTGTGGGTGTTTTCTACAAAGCAAATGAATATGCTGAAATGAACCCCAACTTTTTGGGCTGTGCAGAAAATGCCTTGGGGATACGTGAATGGTTAGAGTCTAAAGGTCATCAGTACATAGTCACTCCTGACAAAGAAGGACCAGATTGTG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGCTTGAGAAACACATTCCTGATCTCCATGTGTTGATTTCGACCCCTTTTCATCCTGCCTATGTCACGGCTGAAAGGATCAAGAAGGCAAAAAATCTACAACTTCTGCTGACAGCTGGAATTGGATCAGATCATGTTGATCTGAAAGCTGCTGCTGCTGCTGGATTGACAGTAGCAGAGGTCACTGGAAGCAATACT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0236E02-u8qcS/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E334813" ref_strand="+" ref_description="SGN-E334813 [cTOE-3-E5]">
      <seq>gagtttattcttctctctgtttttagtaagtacgaaacccttttctgtaaatccaaaaaaaattccgatggcgatgaggcgtgtagcttctacagcagctcgtgctattgcttcaccttcatccttagtttttaccagagaacttcaggcttcccctggccccaaaaagattgtgggtgttttctacaaagcaaatgaatatgctgaaatgaaccccaactttttgggctgtgcagaaaatgccttggggatacgtgaatggttagagtctaaaggtcatcagtacatagtcactcctgacaaagaaggaccagattgtgagcttgagaaacacattcctgatctccatgtgttgatttcgaccccttttcatcctgcctatgtcacggctgaaaggatcaagaaggcaaaaaatctacaacttctgctgacagctggaattggatcagatcatgttgatctgaaagctgctgctgctgctggattgaca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0236E02-u8qcS/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0236E02.1" temp_strand="+" temp_description="C02HBa0236E02.1  AC215430.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0236E02 sequenced_by:kribb upload_account_name:korea">
        <position start="65242" stop="68234"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="65542" g_stop="65689" g_length="148"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="148" r_length="148" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="65690" i_stop="66849" i_length="1160">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="66850" g_stop="67021" g_length="172"/>
          <reference_exon_boundary r_type="cDNA" r_start="149" r_stop="320" r_length="172" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="67022" i_stop="67764" i_length="743">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="0.987" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="67765" g_stop="67934" g_length="170"/>
          <reference_exon_boundary r_type="cDNA" r_start="321" r_stop="490" r_length="170" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0236E02.1" gen_strand="+" ref_id="SGN-E334813" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>490</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0236E02.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E334813" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="65542" e_stop="65689"/>
          <exon e_start="66850" e_stop="67021"/>
          <exon e_start="67765" e_stop="67934"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAGTTTATTCTTCTCTCTGTTTTTAGTAAGTACGAAACCCTTTTCTGTAAATCCAAAAAAAATTCCGATGGCGATGAGGCGTGTAGCTTCTACAGCAGCTCGTGCTATTGCTTCACCTTCATCCTTAGTTTTTACCAGAGAACTTCAGGTAACTAGCCATTTCTCCTCAATAGCCACTTTTTGTTGCTTTTGTTTTATATGACCTAGTTTTCGCCCTTTGATGAATTATCGGAAACCGGCACGGATCAACTCCGATTTTTCGAGAATCAAGTGAGTTGGAGATTGGAACAGAGGAAACTAAAGGAATTTAACCGTGTAAAGGAAAAAATTAAACACACTGTATTTGGTGCTCTACCCCTCGTCTCTTCTTTTTGGCTTTCCCCGTACTCTACACACCAAATGAAATGGCTCGGATATGAAAGGACTAATAACTTTTCAGTTTTCATTACTGCGTCCTTTTTTAAGCTTTCAGTTTTAATTTGCGTGAATATACCTAATTTTTATTAGGGTAGAGTTATATGTTTCAAATTAAATTGCTACCAAGTTAAATTTAAGAATGTTACATAAATTTAGAGACGGCAAGTTTATATACCAAGAAGGGTACTCCTTCATCCACAGAGAAACGGTGTCCAGTTCGAGTATGGGCGTGAATCTAGATATAGTTAATTCCAATGCAGATATCAGACATCGAGTGAGGAAAAAAAAGATTTTATTAATTTGTTATTTTTAGGTTGCTTTTCCTTTAACTGAAAATCTAACCCGGCAGGACCACAACAGTTCTTTTCCGATCATTACTAATGATACTTGATTTTCACGTGCGATTTCTGATATTTTTATACGGAGTAGGTGAAGAGTGAAATGTTTCACGGGTCTCAAGGACAATGGCAGCAGTGCTTCATTTTTTTTTGCATCTTCACGTGCTATATTATTACTTTGTTTATACTAGTTCGACTTGGAAAATCTTTTCATATTCAGTTGTCTGGGGAATAAATAAGATATTTCTTATTTTTTGATTAAAAAAAGAAGAAGATATTTCTTATTTAAAGAAGTGACAAATTGTACTAACTCATTTACCATGCCTAATATATTATATGTGACAATGATGATTTTTTTTAACTATTAATTGTTAGTTTGGACAAAAATGATCAAAGCAAGTATATTGAATAATGCTTATTTCTTGCCAACTGGTGCATCTACGAGATTATAGGAGTTGGATTATAATTTTAGCACATCCAGCATGCTTATATGACCTTAAAATATTCATGTATATTCTGTCCACTCACCTTTTATTTCTTCATTATTTTACAGGCTTCCCCTGGCCCCAAAAAGATTGTGGGTGTTTTCTACAAAGCAAATGAATATGCTGAAATGAACCCCAACTTTTTGGGCTGTGCAGAAAATGCCTTGGGGATACGTGAATGGTTAGAGTCTAAAGGTCATCAGTACATAGTCACTCCTGACAAAGAAGGACCAGATTGTGGTTAGTTCCTGCTAATCTATAATCTCTCATGTTCTATCCATTATCCCACTGAAGCCTATGCATTTCTAAAGATAATTTCTTTACCCTTCATGCTTGTACAACTAAACACATCTTAAAAGGAGTATTTTTGCATTTAAAACATGCATATATGTGCTGAAGTTTTTTAAAAATATATGGCTCACGTGAGGAGAATATAACGGTCATAGCAGGAACATTTATTTAGATAAAGAGCAAAGCAAAGTAAACAATATTTGCTTTGTTAGTGTTGGTCCTTTGCTGCTAGTGAATTATGATCAGGACATTGTGAGGTAGTTTCTTGCAGGAGGGAAAAAAAGAGTGTATTTTACCTTGATATACAGGTGTGCATTTGCAAAACGTCTATACTTCAGGACTCAGGTGTAAGTTGTACTAGTTTGATAAGACTATGGCTAAATTTTGTAATTTAAACAAGGATTTATCAAAGTCGCAGGGGCTTGTTTAGTTGTTGAGTAGAGTGCACACATGGATGCTTTAGTGATTTTCTGATGGATGACATGCTTAGTGTAAATCCTTGCTTATTAGTATCTTTTATCATGAGAAAGAATGGTGCCCTAGTCTGACACACAAACTACTCTGTGTCTTAGTTTTTCACTGTTGAATCCTTTACTATGCTCTATGCAAAGAAATTTCTCCTGAGCTAAAGTTTTTGAGTGTGTCCATCTATAATAGCTTCTTTTTTTTTTCCCATGACTTTCTCTCTGCAGAGCTTGAGAAACACATTCCTGATCTCCATGTGTTGATTTCGACCCCTTTTCATCCTGCCTATGTCACGGCTGAAAGGATCAAGAAGGCAAAAAATCTACAACTTCTGCTGACAGCTGGAATTGGATCAGATCATGTTGATCTGAAAGCTGCTGCTGCTGCTGGATTGACA</genome_strand>
        <mrna_strand>GAGTTTATTCTTCTCTCTGTTTTTAGTAAGTACGAAACCCTTTTCTGTAAATCCAAAAAAAATTCCGATGGCGATGAGGCGTGTAGCTTCTACAGCAGCTCGTGCTATTGCTTCACCTTCATCCTTAGTTTTTACCAGAGAACTTCAG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCTTCCCCTGGCCCCAAAAAGATTGTGGGTGTTTTCTACAAAGCAAATGAATATGCTGAAATGAACCCCAACTTTTTGGGCTGTGCAGAAAATGCCTTGGGGATACGTGAATGGTTAGAGTCTAAAGGTCATCAGTACATAGTCACTCCTGACAAAGAAGGACCAGATTGTG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGCTTGAGAAACACATTCCTGATCTCCATGTGTTGATTTCGACCCCTTTTCATCCTGCCTATGTCACGGCTGAAAGGATCAAGAAGGCAAAAAATCTACAACTTCTGCTGACAGCTGGAATTGGATCAGATCATGTTGATCTGAAAGCTGCTGCTGCTGCTGGATTGACA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0236E02-u8qcS/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E367392" ref_strand="+" ref_description="SGN-E367392 [cLPT-7-O6]">
      <seq>gagtttattcttctctctgcttttagtaagtacaaaccctttgctgtaaatccgaaaaaaattccgatggcgatgaggcgtgtagcttctacagcagctcgtgctattgcttcaccttcatccttagtttttaccagagaactttaggcttcccctggccccaaaaagattgtgggtgttttctacaaagcaaatgaatatgctggaatgaaccccaactttttgggctgtgcataaaatgccttggggatacgtgaatggttagagtctaaaggtcatcagtacatagtcactcctgacaaagaaggaccagattgtgagcttgagaaacacatccctgatctccatgtgttgatttcgaccccttttcattctgcctatgtcacggctgaaaggatca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0236E02-u8qcS/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0236E02.1" temp_strand="+" temp_description="C02HBa0236E02.1  AC215430.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0236E02 sequenced_by:kribb upload_account_name:korea">
        <position start="65242" stop="68145"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="65542" g_stop="65689" g_length="148"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="147" r_length="147" r_score="0.966"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="65690" i_stop="66849" i_length="1160">
            <donor d_prob="1.000" d_score="0.98"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="66850" g_stop="67021" g_length="172"/>
          <reference_exon_boundary r_type="cDNA" r_start="148" r_stop="319" r_length="172" r_score="0.988"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="67022" i_stop="67764" i_length="743">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="0.987" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="67765" g_stop="67845" g_length="81"/>
          <reference_exon_boundary r_type="cDNA" r_start="320" r_stop="400" r_length="81" r_score="0.975"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0236E02.1" gen_strand="+" ref_id="SGN-E367392" ref_strand="+">
        <total_alignment_score>0.978</total_alignment_score>
        <cumulative_length_of_scored_exons>401</cumulative_length_of_scored_exons>
        <coverage percentage="1.003" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0236E02.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E367392" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="65542" e_stop="65689"/>
          <exon e_start="66850" e_stop="67021"/>
          <exon e_start="67765" e_stop="67845"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAGTTTATTCTTCTCTCTGTTTTTAGTAAGTACGAAACCCTTTTCTGTAAATCCAAAAAAAATTCCGATGGCGATGAGGCGTGTAGCTTCTACAGCAGCTCGTGCTATTGCTTCACCTTCATCCTTAGTTTTTACCAGAGAACTTCAGGTAACTAGCCATTTCTCCTCAATAGCCACTTTTTGTTGCTTTTGTTTTATATGACCTAGTTTTCGCCCTTTGATGAATTATCGGAAACCGGCACGGATCAACTCCGATTTTTCGAGAATCAAGTGAGTTGGAGATTGGAACAGAGGAAACTAAAGGAATTTAACCGTGTAAAGGAAAAAATTAAACACACTGTATTTGGTGCTCTACCCCTCGTCTCTTCTTTTTGGCTTTCCCCGTACTCTACACACCAAATGAAATGGCTCGGATATGAAAGGACTAATAACTTTTCAGTTTTCATTACTGCGTCCTTTTTTAAGCTTTCAGTTTTAATTTGCGTGAATATACCTAATTTTTATTAGGGTAGAGTTATATGTTTCAAATTAAATTGCTACCAAGTTAAATTTAAGAATGTTACATAAATTTAGAGACGGCAAGTTTATATACCAAGAAGGGTACTCCTTCATCCACAGAGAAACGGTGTCCAGTTCGAGTATGGGCGTGAATCTAGATATAGTTAATTCCAATGCAGATATCAGACATCGAGTGAGGAAAAAAAAGATTTTATTAATTTGTTATTTTTAGGTTGCTTTTCCTTTAACTGAAAATCTAACCCGGCAGGACCACAACAGTTCTTTTCCGATCATTACTAATGATACTTGATTTTCACGTGCGATTTCTGATATTTTTATACGGAGTAGGTGAAGAGTGAAATGTTTCACGGGTCTCAAGGACAATGGCAGCAGTGCTTCATTTTTTTTTGCATCTTCACGTGCTATATTATTACTTTGTTTATACTAGTTCGACTTGGAAAATCTTTTCATATTCAGTTGTCTGGGGAATAAATAAGATATTTCTTATTTTTTGATTAAAAAAAGAAGAAGATATTTCTTATTTAAAGAAGTGACAAATTGTACTAACTCATTTACCATGCCTAATATATTATATGTGACAATGATGATTTTTTTTAACTATTAATTGTTAGTTTGGACAAAAATGATCAAAGCAAGTATATTGAATAATGCTTATTTCTTGCCAACTGGTGCATCTACGAGATTATAGGAGTTGGATTATAATTTTAGCACATCCAGCATGCTTATATGACCTTAAAATATTCATGTATATTCTGTCCACTCACCTTTTATTTCTTCATTATTTTACAGGCTTCCCCTGGCCCCAAAAAGATTGTGGGTGTTTTCTACAAAGCAAATGAATATGCTGAAATGAACCCCAACTTTTTGGGCTGTGCAGAAAATGCCTTGGGGATACGTGAATGGTTAGAGTCTAAAGGTCATCAGTACATAGTCACTCCTGACAAAGAAGGACCAGATTGTGGTTAGTTCCTGCTAATCTATAATCTCTCATGTTCTATCCATTATCCCACTGAAGCCTATGCATTTCTAAAGATAATTTCTTTACCCTTCATGCTTGTACAACTAAACACATCTTAAAAGGAGTATTTTTGCATTTAAAACATGCATATATGTGCTGAAGTTTTTTAAAAATATATGGCTCACGTGAGGAGAATATAACGGTCATAGCAGGAACATTTATTTAGATAAAGAGCAAAGCAAAGTAAACAATATTTGCTTTGTTAGTGTTGGTCCTTTGCTGCTAGTGAATTATGATCAGGACATTGTGAGGTAGTTTCTTGCAGGAGGGAAAAAAAGAGTGTATTTTACCTTGATATACAGGTGTGCATTTGCAAAACGTCTATACTTCAGGACTCAGGTGTAAGTTGTACTAGTTTGATAAGACTATGGCTAAATTTTGTAATTTAAACAAGGATTTATCAAAGTCGCAGGGGCTTGTTTAGTTGTTGAGTAGAGTGCACACATGGATGCTTTAGTGATTTTCTGATGGATGACATGCTTAGTGTAAATCCTTGCTTATTAGTATCTTTTATCATGAGAAAGAATGGTGCCCTAGTCTGACACACAAACTACTCTGTGTCTTAGTTTTTCACTGTTGAATCCTTTACTATGCTCTATGCAAAGAAATTTCTCCTGAGCTAAAGTTTTTGAGTGTGTCCATCTATAATAGCTTCTTTTTTTTTTCCCATGACTTTCTCTCTGCAGAGCTTGAGAAACACATTCCTGATCTCCATGTGTTGATTTCGACCCCTTTTCATCCTGCCTATGTCACGGCTGAAAGGATCA</genome_strand>
        <mrna_strand>GAGTTTATTCTTCTCTCTGCTTTTAGTAAGTAC-AAACCCTTTGCTGTAAATCCGAAAAAAATTCCGATGGCGATGAGGCGTGTAGCTTCTACAGCAGCTCGTGCTATTGCTTCACCTTCATCCTTAGTTTTTACCAGAGAACTTTAG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCTTCCCCTGGCCCCAAAAAGATTGTGGGTGTTTTCTACAAAGCAAATGAATATGCTGGAATGAACCCCAACTTTTTGGGCTGTGCATAAAATGCCTTGGGGATACGTGAATGGTTAGAGTCTAAAGGTCATCAGTACATAGTCACTCCTGACAAAGAAGGACCAGATTGTG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGCTTGAGAAACACATCCCTGATCTCCATGTGTTGATTTCGACCCCTTTTCATTCTGCCTATGTCACGGCTGAAAGGATCA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0236E02-u8qcS/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E703584" ref_strand="+" ref_description="SGN-E703584 [FA21DF06]">
      <seq>agtttattcttctctctgtttttagtaagtacgaaacccttttctgtaaatccaaaaaaaattccgatggcgatgaggcgtgtagcttctacagcagctcgtgctattgcttcaccttcatccttagtttttaccagagaacttcaggcttcccctggccccaaaaagattgtgggtgttttctacaaagcaaatgaatatgctgaaatgaaccccaactttttgggctgtgcagaaaatgccttggggatacgtgaatggttagagtctaaaggtcatcagtacatagtcactcctgacaaagaaggaccagattgtgagcttgagaaacacattcctgatctccatgtgttgatttcgaccccttttcatcctgcctatgtcacggctgaaaggatcaagaaggcaaaaaatctacaacttctgctgacagctggaattggatcagatcatgttgatctgaaagctgctgctgctgctggattgacagtagcagaggtcactggaagcaatactgtctcagttgcggaagatgaactgatgcgaatcttaattcttgtccgaaatttcttacctggacatcatcaggttatcaatggggagtggaatgttgctgcaattgcgcacagagcttatgatttggaaggcaagactgttggaactgttggtgcaggacgtattggcagacttttactccagcgattgaagccatttaactgtaatctactttaccatgaccgtcttaagatggattctgagctagagaatcaaattggagcaaagtttgaggaagatctcgataagatgctctcgaaatgtgac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0236E02-u8qcS/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0236E02.1" temp_strand="+" temp_description="C02HBa0236E02.1  AC215430.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0236E02 sequenced_by:kribb upload_account_name:korea">
        <position start="65243" stop="68567"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="65543" g_stop="65689" g_length="147"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="147" r_length="147" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="65690" i_stop="66849" i_length="1160">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="66850" g_stop="67021" g_length="172"/>
          <reference_exon_boundary r_type="cDNA" r_start="148" r_stop="319" r_length="172" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="67022" i_stop="67764" i_length="743">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="0.987" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="67765" g_stop="68267" g_length="503"/>
          <reference_exon_boundary r_type="cDNA" r_start="320" r_stop="822" r_length="503" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0236E02.1" gen_strand="+" ref_id="SGN-E703584" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>822</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0236E02.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E703584" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="65543" e_stop="65689"/>
          <exon e_start="66850" e_stop="67021"/>
          <exon e_start="67765" e_stop="68267"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGTTTATTCTTCTCTCTGTTTTTAGTAAGTACGAAACCCTTTTCTGTAAATCCAAAAAAAATTCCGATGGCGATGAGGCGTGTAGCTTCTACAGCAGCTCGTGCTATTGCTTCACCTTCATCCTTAGTTTTTACCAGAGAACTTCAGGTAACTAGCCATTTCTCCTCAATAGCCACTTTTTGTTGCTTTTGTTTTATATGACCTAGTTTTCGCCCTTTGATGAATTATCGGAAACCGGCACGGATCAACTCCGATTTTTCGAGAATCAAGTGAGTTGGAGATTGGAACAGAGGAAACTAAAGGAATTTAACCGTGTAAAGGAAAAAATTAAACACACTGTATTTGGTGCTCTACCCCTCGTCTCTTCTTTTTGGCTTTCCCCGTACTCTACACACCAAATGAAATGGCTCGGATATGAAAGGACTAATAACTTTTCAGTTTTCATTACTGCGTCCTTTTTTAAGCTTTCAGTTTTAATTTGCGTGAATATACCTAATTTTTATTAGGGTAGAGTTATATGTTTCAAATTAAATTGCTACCAAGTTAAATTTAAGAATGTTACATAAATTTAGAGACGGCAAGTTTATATACCAAGAAGGGTACTCCTTCATCCACAGAGAAACGGTGTCCAGTTCGAGTATGGGCGTGAATCTAGATATAGTTAATTCCAATGCAGATATCAGACATCGAGTGAGGAAAAAAAAGATTTTATTAATTTGTTATTTTTAGGTTGCTTTTCCTTTAACTGAAAATCTAACCCGGCAGGACCACAACAGTTCTTTTCCGATCATTACTAATGATACTTGATTTTCACGTGCGATTTCTGATATTTTTATACGGAGTAGGTGAAGAGTGAAATGTTTCACGGGTCTCAAGGACAATGGCAGCAGTGCTTCATTTTTTTTTGCATCTTCACGTGCTATATTATTACTTTGTTTATACTAGTTCGACTTGGAAAATCTTTTCATATTCAGTTGTCTGGGGAATAAATAAGATATTTCTTATTTTTTGATTAAAAAAAGAAGAAGATATTTCTTATTTAAAGAAGTGACAAATTGTACTAACTCATTTACCATGCCTAATATATTATATGTGACAATGATGATTTTTTTTAACTATTAATTGTTAGTTTGGACAAAAATGATCAAAGCAAGTATATTGAATAATGCTTATTTCTTGCCAACTGGTGCATCTACGAGATTATAGGAGTTGGATTATAATTTTAGCACATCCAGCATGCTTATATGACCTTAAAATATTCATGTATATTCTGTCCACTCACCTTTTATTTCTTCATTATTTTACAGGCTTCCCCTGGCCCCAAAAAGATTGTGGGTGTTTTCTACAAAGCAAATGAATATGCTGAAATGAACCCCAACTTTTTGGGCTGTGCAGAAAATGCCTTGGGGATACGTGAATGGTTAGAGTCTAAAGGTCATCAGTACATAGTCACTCCTGACAAAGAAGGACCAGATTGTGGTTAGTTCCTGCTAATCTATAATCTCTCATGTTCTATCCATTATCCCACTGAAGCCTATGCATTTCTAAAGATAATTTCTTTACCCTTCATGCTTGTACAACTAAACACATCTTAAAAGGAGTATTTTTGCATTTAAAACATGCATATATGTGCTGAAGTTTTTTAAAAATATATGGCTCACGTGAGGAGAATATAACGGTCATAGCAGGAACATTTATTTAGATAAAGAGCAAAGCAAAGTAAACAATATTTGCTTTGTTAGTGTTGGTCCTTTGCTGCTAGTGAATTATGATCAGGACATTGTGAGGTAGTTTCTTGCAGGAGGGAAAAAAAGAGTGTATTTTACCTTGATATACAGGTGTGCATTTGCAAAACGTCTATACTTCAGGACTCAGGTGTAAGTTGTACTAGTTTGATAAGACTATGGCTAAATTTTGTAATTTAAACAAGGATTTATCAAAGTCGCAGGGGCTTGTTTAGTTGTTGAGTAGAGTGCACACATGGATGCTTTAGTGATTTTCTGATGGATGACATGCTTAGTGTAAATCCTTGCTTATTAGTATCTTTTATCATGAGAAAGAATGGTGCCCTAGTCTGACACACAAACTACTCTGTGTCTTAGTTTTTCACTGTTGAATCCTTTACTATGCTCTATGCAAAGAAATTTCTCCTGAGCTAAAGTTTTTGAGTGTGTCCATCTATAATAGCTTCTTTTTTTTTTCCCATGACTTTCTCTCTGCAGAGCTTGAGAAACACATTCCTGATCTCCATGTGTTGATTTCGACCCCTTTTCATCCTGCCTATGTCACGGCTGAAAGGATCAAGAAGGCAAAAAATCTACAACTTCTGCTGACAGCTGGAATTGGATCAGATCATGTTGATCTGAAAGCTGCTGCTGCTGCTGGATTGACAGTAGCAGAGGTCACTGGAAGCAATACTGTCTCAGTTGCGGAAGATGAACTGATGCGAATCTTAATTCTTGTCCGAAATTTCTTACCTGGACATCATCAGGTTATCAATGGGGAGTGGAATGTTGCTGCAATTGCGCACAGAGCTTATGATTTGGAAGGCAAGACTGTTGGAACTGTTGGTGCAGGACGTATTGGCAGACTTTTACTCCAGCGATTGAAGCCATTTAACTGTAATCTACTTTACCATGACCGTCTTAAGATGGATTCTGAGCTAGAGAATCAAATTGGAGCAAAGTTTGAGGAAGATCTCGATAAGATGCTCTCGAAATGTGAC</genome_strand>
        <mrna_strand>AGTTTATTCTTCTCTCTGTTTTTAGTAAGTACGAAACCCTTTTCTGTAAATCCAAAAAAAATTCCGATGGCGATGAGGCGTGTAGCTTCTACAGCAGCTCGTGCTATTGCTTCACCTTCATCCTTAGTTTTTACCAGAGAACTTCAG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCTTCCCCTGGCCCCAAAAAGATTGTGGGTGTTTTCTACAAAGCAAATGAATATGCTGAAATGAACCCCAACTTTTTGGGCTGTGCAGAAAATGCCTTGGGGATACGTGAATGGTTAGAGTCTAAAGGTCATCAGTACATAGTCACTCCTGACAAAGAAGGACCAGATTGTG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGCTTGAGAAACACATTCCTGATCTCCATGTGTTGATTTCGACCCCTTTTCATCCTGCCTATGTCACGGCTGAAAGGATCAAGAAGGCAAAAAATCTACAACTTCTGCTGACAGCTGGAATTGGATCAGATCATGTTGATCTGAAAGCTGCTGCTGCTGCTGGATTGACAGTAGCAGAGGTCACTGGAAGCAATACTGTCTCAGTTGCGGAAGATGAACTGATGCGAATCTTAATTCTTGTCCGAAATTTCTTACCTGGACATCATCAGGTTATCAATGGGGAGTGGAATGTTGCTGCAATTGCGCACAGAGCTTATGATTTGGAAGGCAAGACTGTTGGAACTGTTGGTGCAGGACGTATTGGCAGACTTTTACTCCAGCGATTGAAGCCATTTAACTGTAATCTACTTTACCATGACCGTCTTAAGATGGATTCTGAGCTAGAGAATCAAATTGGAGCAAAGTTTGAGGAAGATCTCGATAAGATGCTCTCGAAATGTGAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0236E02-u8qcS/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E410236" ref_strand="+" ref_description="SGN-E410236 [PPI-16-O2]">
      <seq>agtttattcttctctctgtttttagcaagtacaaaaccctttgctgtaaatccaaaaaattccgatggcgatgaggcgtgtagcttctacagcagctcgtgctattgcttcaccttcatccttagtttttaccagagaacttcaggcttcccctggccccaaaaagattgtgggtgttttctacaaagcaaatgaatatgctgaaatgaaccccaactttttgggctgtgcagaaaatgccttggggatacgtgaatggttagaatctaaaggtcatcagtacatagtcactcctgacaaagaaggaccagattgtgagcttgagaaacacattcctgatctccatgtgttgatttcgaccccttttcatcctgcctatgtcacggctgaaaggatcaagaaggcaaaaaatctacaacttctgctgacagctggaattggatcagatcatgttgatctgaaagctgctgctgctgctggattgacagtagcagaggtcactggaagcaatactgtctcagttgctgaagatgaactgatgcgaatcttaattcttgtccgaaatttcttgcctggacatcatcaggttatcaatgggggagtggaatgttgctgncattgcgcacagagcttatgatttgga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0236E02-u8qcS/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0236E02.1" temp_strand="+" temp_description="C02HBa0236E02.1  AC215430.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0236E02 sequenced_by:kribb upload_account_name:korea">
        <position start="65243" stop="68389"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="65543" g_stop="65689" g_length="147"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="145" r_length="145" r_score="0.966"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="65690" i_stop="66849" i_length="1160">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="66850" g_stop="67021" g_length="172"/>
          <reference_exon_boundary r_type="cDNA" r_start="146" r_stop="317" r_length="172" r_score="0.994"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="67022" i_stop="67764" i_length="743">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="0.987" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="67765" g_stop="68089" g_length="325"/>
          <reference_exon_boundary r_type="cDNA" r_start="318" r_stop="643" r_length="326" r_score="0.982"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0236E02.1" gen_strand="+" ref_id="SGN-E410236" ref_strand="+">
        <total_alignment_score>0.981</total_alignment_score>
        <cumulative_length_of_scored_exons>644</cumulative_length_of_scored_exons>
        <coverage percentage="1.002" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0236E02.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E410236" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="65543" e_stop="65689"/>
          <exon e_start="66850" e_stop="67021"/>
          <exon e_start="67765" e_stop="68089"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGTTTATTCTTCTCTCTGTTTTTAGTAAGTACGAAACCCTTTTCTGTAAATCCAAAAAAAATTCCGATGGCGATGAGGCGTGTAGCTTCTACAGCAGCTCGTGCTATTGCTTCACCTTCATCCTTAGTTTTTACCAGAGAACTTCAGGTAACTAGCCATTTCTCCTCAATAGCCACTTTTTGTTGCTTTTGTTTTATATGACCTAGTTTTCGCCCTTTGATGAATTATCGGAAACCGGCACGGATCAACTCCGATTTTTCGAGAATCAAGTGAGTTGGAGATTGGAACAGAGGAAACTAAAGGAATTTAACCGTGTAAAGGAAAAAATTAAACACACTGTATTTGGTGCTCTACCCCTCGTCTCTTCTTTTTGGCTTTCCCCGTACTCTACACACCAAATGAAATGGCTCGGATATGAAAGGACTAATAACTTTTCAGTTTTCATTACTGCGTCCTTTTTTAAGCTTTCAGTTTTAATTTGCGTGAATATACCTAATTTTTATTAGGGTAGAGTTATATGTTTCAAATTAAATTGCTACCAAGTTAAATTTAAGAATGTTACATAAATTTAGAGACGGCAAGTTTATATACCAAGAAGGGTACTCCTTCATCCACAGAGAAACGGTGTCCAGTTCGAGTATGGGCGTGAATCTAGATATAGTTAATTCCAATGCAGATATCAGACATCGAGTGAGGAAAAAAAAGATTTTATTAATTTGTTATTTTTAGGTTGCTTTTCCTTTAACTGAAAATCTAACCCGGCAGGACCACAACAGTTCTTTTCCGATCATTACTAATGATACTTGATTTTCACGTGCGATTTCTGATATTTTTATACGGAGTAGGTGAAGAGTGAAATGTTTCACGGGTCTCAAGGACAATGGCAGCAGTGCTTCATTTTTTTTTGCATCTTCACGTGCTATATTATTACTTTGTTTATACTAGTTCGACTTGGAAAATCTTTTCATATTCAGTTGTCTGGGGAATAAATAAGATATTTCTTATTTTTTGATTAAAAAAAGAAGAAGATATTTCTTATTTAAAGAAGTGACAAATTGTACTAACTCATTTACCATGCCTAATATATTATATGTGACAATGATGATTTTTTTTAACTATTAATTGTTAGTTTGGACAAAAATGATCAAAGCAAGTATATTGAATAATGCTTATTTCTTGCCAACTGGTGCATCTACGAGATTATAGGAGTTGGATTATAATTTTAGCACATCCAGCATGCTTATATGACCTTAAAATATTCATGTATATTCTGTCCACTCACCTTTTATTTCTTCATTATTTTACAGGCTTCCCCTGGCCCCAAAAAGATTGTGGGTGTTTTCTACAAAGCAAATGAATATGCTGAAATGAACCCCAACTTTTTGGGCTGTGCAGAAAATGCCTTGGGGATACGTGAATGGTTAGAGTCTAAAGGTCATCAGTACATAGTCACTCCTGACAAAGAAGGACCAGATTGTGGTTAGTTCCTGCTAATCTATAATCTCTCATGTTCTATCCATTATCCCACTGAAGCCTATGCATTTCTAAAGATAATTTCTTTACCCTTCATGCTTGTACAACTAAACACATCTTAAAAGGAGTATTTTTGCATTTAAAACATGCATATATGTGCTGAAGTTTTTTAAAAATATATGGCTCACGTGAGGAGAATATAACGGTCATAGCAGGAACATTTATTTAGATAAAGAGCAAAGCAAAGTAAACAATATTTGCTTTGTTAGTGTTGGTCCTTTGCTGCTAGTGAATTATGATCAGGACATTGTGAGGTAGTTTCTTGCAGGAGGGAAAAAAAGAGTGTATTTTACCTTGATATACAGGTGTGCATTTGCAAAACGTCTATACTTCAGGACTCAGGTGTAAGTTGTACTAGTTTGATAAGACTATGGCTAAATTTTGTAATTTAAACAAGGATTTATCAAAGTCGCAGGGGCTTGTTTAGTTGTTGAGTAGAGTGCACACATGGATGCTTTAGTGATTTTCTGATGGATGACATGCTTAGTGTAAATCCTTGCTTATTAGTATCTTTTATCATGAGAAAGAATGGTGCCCTAGTCTGACACACAAACTACTCTGTGTCTTAGTTTTTCACTGTTGAATCCTTTACTATGCTCTATGCAAAGAAATTTCTCCTGAGCTAAAGTTTTTGAGTGTGTCCATCTATAATAGCTTCTTTTTTTTTTCCCATGACTTTCTCTCTGCAGAGCTTGAGAAACACATTCCTGATCTCCATGTGTTGATTTCGACCCCTTTTCATCCTGCCTATGTCACGGCTGAAAGGATCAAGAAGGCAAAAAATCTACAACTTCTGCTGACAGCTGGAATTGGATCAGATCATGTTGATCTGAAAGCTGCTGCTGCTGCTGGATTGACAGTAGCAGAGGTCACTGGAAGCAATACTGTCTCAGTTGCGGAAGATGAACTGATGCGAATCTTAATTCTTGTCCGAAATTTCTTACCTGGACATCATCAGGTTATCAAT-GGGGAGTGGAATGTTGCTGCAATTGCGCACAGAGCTTATGATTTGGA</genome_strand>
        <mrna_strand>AGTTTATTCTTCTCTCTGTTTTTAGCAAGTACAAAACCCTTTGCTGTAAATCC--AAAAAATTCCGATGGCGATGAGGCGTGTAGCTTCTACAGCAGCTCGTGCTATTGCTTCACCTTCATCCTTAGTTTTTACCAGAGAACTTCAG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCTTCCCCTGGCCCCAAAAAGATTGTGGGTGTTTTCTACAAAGCAAATGAATATGCTGAAATGAACCCCAACTTTTTGGGCTGTGCAGAAAATGCCTTGGGGATACGTGAATGGTTAGAATCTAAAGGTCATCAGTACATAGTCACTCCTGACAAAGAAGGACCAGATTGTG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGCTTGAGAAACACATTCCTGATCTCCATGTGTTGATTTCGACCCCTTTTCATCCTGCCTATGTCACGGCTGAAAGGATCAAGAAGGCAAAAAATCTACAACTTCTGCTGACAGCTGGAATTGGATCAGATCATGTTGATCTGAAAGCTGCTGCTGCTGCTGGATTGACAGTAGCAGAGGTCACTGGAAGCAATACTGTCTCAGTTGCTGAAGATGAACTGATGCGAATCTTAATTCTTGTCCGAAATTTCTTGCCTGGACATCATCAGGTTATCAATGGGGGAGTGGAATGTTGCTGNCATTGCGCACAGAGCTTATGATTTGGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0236E02-u8qcS/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E208144" ref_strand="+" ref_description="SGN-E208144 [cLEC-34-P6]">
      <seq>agtttattcttctctctgtttttagtaagtacgaaacccttttctgtaaatccaaaaaaattccgatggcgatgaggcgtgtagcttctacagcagctcgtgctattgcttcaccttcatccttagtttttaccagagaacttcaggcttcccctggccccaaaaagattgtgggtgttttctacaaagcaaatgaatatgctgaaatgaaccccaactttttgggctgtgcagaaaatgccttggggatacgtgaatggttagagtctaaaggtcatcagtacatagtcactcctgacaaagaaggaccagattgtgagcttgagaaacacattcctgatctccatgtgttgatttcgaccccttttcatcctgcctatgtcacggctgaaaggatcaagaaggcaaaaaatctacaacttctgctgacagctggaattggatcagatcatgttgatctgaaagctgctgctgctgctggattgacagtagcagaggtcactggaagcaatactgtctcagttgcggaagatgaactgatg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0236E02-u8qcS/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0236E02.1" temp_strand="+" temp_description="C02HBa0236E02.1  AC215430.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0236E02 sequenced_by:kribb upload_account_name:korea">
        <position start="65243" stop="68288"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="65543" g_stop="65689" g_length="147"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="146" r_length="146" r_score="0.993"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="65690" i_stop="66849" i_length="1160">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="66850" g_stop="67021" g_length="172"/>
          <reference_exon_boundary r_type="cDNA" r_start="147" r_stop="318" r_length="172" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="67022" i_stop="67764" i_length="743">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="0.987" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="67765" g_stop="67988" g_length="224"/>
          <reference_exon_boundary r_type="cDNA" r_start="319" r_stop="542" r_length="224" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0236E02.1" gen_strand="+" ref_id="SGN-E208144" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>543</cumulative_length_of_scored_exons>
        <coverage percentage="1.002" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0236E02.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E208144" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="65543" e_stop="65689"/>
          <exon e_start="66850" e_stop="67021"/>
          <exon e_start="67765" e_stop="67988"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGTTTATTCTTCTCTCTGTTTTTAGTAAGTACGAAACCCTTTTCTGTAAATCCAAAAAAAATTCCGATGGCGATGAGGCGTGTAGCTTCTACAGCAGCTCGTGCTATTGCTTCACCTTCATCCTTAGTTTTTACCAGAGAACTTCAGGTAACTAGCCATTTCTCCTCAATAGCCACTTTTTGTTGCTTTTGTTTTATATGACCTAGTTTTCGCCCTTTGATGAATTATCGGAAACCGGCACGGATCAACTCCGATTTTTCGAGAATCAAGTGAGTTGGAGATTGGAACAGAGGAAACTAAAGGAATTTAACCGTGTAAAGGAAAAAATTAAACACACTGTATTTGGTGCTCTACCCCTCGTCTCTTCTTTTTGGCTTTCCCCGTACTCTACACACCAAATGAAATGGCTCGGATATGAAAGGACTAATAACTTTTCAGTTTTCATTACTGCGTCCTTTTTTAAGCTTTCAGTTTTAATTTGCGTGAATATACCTAATTTTTATTAGGGTAGAGTTATATGTTTCAAATTAAATTGCTACCAAGTTAAATTTAAGAATGTTACATAAATTTAGAGACGGCAAGTTTATATACCAAGAAGGGTACTCCTTCATCCACAGAGAAACGGTGTCCAGTTCGAGTATGGGCGTGAATCTAGATATAGTTAATTCCAATGCAGATATCAGACATCGAGTGAGGAAAAAAAAGATTTTATTAATTTGTTATTTTTAGGTTGCTTTTCCTTTAACTGAAAATCTAACCCGGCAGGACCACAACAGTTCTTTTCCGATCATTACTAATGATACTTGATTTTCACGTGCGATTTCTGATATTTTTATACGGAGTAGGTGAAGAGTGAAATGTTTCACGGGTCTCAAGGACAATGGCAGCAGTGCTTCATTTTTTTTTGCATCTTCACGTGCTATATTATTACTTTGTTTATACTAGTTCGACTTGGAAAATCTTTTCATATTCAGTTGTCTGGGGAATAAATAAGATATTTCTTATTTTTTGATTAAAAAAAGAAGAAGATATTTCTTATTTAAAGAAGTGACAAATTGTACTAACTCATTTACCATGCCTAATATATTATATGTGACAATGATGATTTTTTTTAACTATTAATTGTTAGTTTGGACAAAAATGATCAAAGCAAGTATATTGAATAATGCTTATTTCTTGCCAACTGGTGCATCTACGAGATTATAGGAGTTGGATTATAATTTTAGCACATCCAGCATGCTTATATGACCTTAAAATATTCATGTATATTCTGTCCACTCACCTTTTATTTCTTCATTATTTTACAGGCTTCCCCTGGCCCCAAAAAGATTGTGGGTGTTTTCTACAAAGCAAATGAATATGCTGAAATGAACCCCAACTTTTTGGGCTGTGCAGAAAATGCCTTGGGGATACGTGAATGGTTAGAGTCTAAAGGTCATCAGTACATAGTCACTCCTGACAAAGAAGGACCAGATTGTGGTTAGTTCCTGCTAATCTATAATCTCTCATGTTCTATCCATTATCCCACTGAAGCCTATGCATTTCTAAAGATAATTTCTTTACCCTTCATGCTTGTACAACTAAACACATCTTAAAAGGAGTATTTTTGCATTTAAAACATGCATATATGTGCTGAAGTTTTTTAAAAATATATGGCTCACGTGAGGAGAATATAACGGTCATAGCAGGAACATTTATTTAGATAAAGAGCAAAGCAAAGTAAACAATATTTGCTTTGTTAGTGTTGGTCCTTTGCTGCTAGTGAATTATGATCAGGACATTGTGAGGTAGTTTCTTGCAGGAGGGAAAAAAAGAGTGTATTTTACCTTGATATACAGGTGTGCATTTGCAAAACGTCTATACTTCAGGACTCAGGTGTAAGTTGTACTAGTTTGATAAGACTATGGCTAAATTTTGTAATTTAAACAAGGATTTATCAAAGTCGCAGGGGCTTGTTTAGTTGTTGAGTAGAGTGCACACATGGATGCTTTAGTGATTTTCTGATGGATGACATGCTTAGTGTAAATCCTTGCTTATTAGTATCTTTTATCATGAGAAAGAATGGTGCCCTAGTCTGACACACAAACTACTCTGTGTCTTAGTTTTTCACTGTTGAATCCTTTACTATGCTCTATGCAAAGAAATTTCTCCTGAGCTAAAGTTTTTGAGTGTGTCCATCTATAATAGCTTCTTTTTTTTTTCCCATGACTTTCTCTCTGCAGAGCTTGAGAAACACATTCCTGATCTCCATGTGTTGATTTCGACCCCTTTTCATCCTGCCTATGTCACGGCTGAAAGGATCAAGAAGGCAAAAAATCTACAACTTCTGCTGACAGCTGGAATTGGATCAGATCATGTTGATCTGAAAGCTGCTGCTGCTGCTGGATTGACAGTAGCAGAGGTCACTGGAAGCAATACTGTCTCAGTTGCGGAAGATGAACTGATG</genome_strand>
        <mrna_strand>AGTTTATTCTTCTCTCTGTTTTTAGTAAGTACGAAACCCTTTTCTGTAAATCC-AAAAAAATTCCGATGGCGATGAGGCGTGTAGCTTCTACAGCAGCTCGTGCTATTGCTTCACCTTCATCCTTAGTTTTTACCAGAGAACTTCAG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCTTCCCCTGGCCCCAAAAAGATTGTGGGTGTTTTCTACAAAGCAAATGAATATGCTGAAATGAACCCCAACTTTTTGGGCTGTGCAGAAAATGCCTTGGGGATACGTGAATGGTTAGAGTCTAAAGGTCATCAGTACATAGTCACTCCTGACAAAGAAGGACCAGATTGTG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGCTTGAGAAACACATTCCTGATCTCCATGTGTTGATTTCGACCCCTTTTCATCCTGCCTATGTCACGGCTGAAAGGATCAAGAAGGCAAAAAATCTACAACTTCTGCTGACAGCTGGAATTGGATCAGATCATGTTGATCTGAAAGCTGCTGCTGCTGCTGGATTGACAGTAGCAGAGGTCACTGGAAGCAATACTGTCTCAGTTGCGGAAGATGAACTGATG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0236E02-u8qcS/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E205702" ref_strand="+" ref_description="SGN-E205702 [cLEC-21-G16]">
      <seq>agtttatacttctctctgttcttagtaagtacgaaacccttgtctgtaaatggaaaaaaaattccgatggcgatgaggcgtgtagcttctacagcagctcgtgctattgcttcaccttcatccttagtttttaccagagaacttcatgctttccctggccccaaaaagattgtgggtgttttctacaaagcaaatgaatatgctgaaatgaaccccaactttttgggctgtgcagaaaatgccttggggatacgtgaatggttagagtctaaaggtcatcagtacatagtcactcctgaccaagaagggaccagattgtgagcttgaaaaacacattcc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0236E02-u8qcS/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0236E02.1" temp_strand="+" temp_description="C02HBa0236E02.1  AC215430.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0236E02 sequenced_by:kribb upload_account_name:korea">
        <position start="65243" stop="67324"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="65543" g_stop="65689" g_length="147"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="147" r_length="147" r_score="0.959"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="65690" i_stop="66849" i_length="1160">
            <donor d_prob="1.000" d_score="0.98"/>
            <acceptor a_prob="1.000" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="66850" g_stop="67021" g_length="172"/>
          <reference_exon_boundary r_type="cDNA" r_start="148" r_stop="320" r_length="173" r_score="0.977"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0236E02.1" gen_strand="+" ref_id="SGN-E205702" ref_strand="+">
        <total_alignment_score>0.969</total_alignment_score>
        <cumulative_length_of_scored_exons>319</cumulative_length_of_scored_exons>
        <coverage percentage="0.941" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0236E02.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E205702" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="65543" e_stop="65689"/>
          <exon e_start="66850" e_stop="67021"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGTTTATTCTTCTCTCTGTTTTTAGTAAGTACGAAACCCTTTTCTGTAAATCCAAAAAAAATTCCGATGGCGATGAGGCGTGTAGCTTCTACAGCAGCTCGTGCTATTGCTTCACCTTCATCCTTAGTTTTTACCAGAGAACTTCAGGTAACTAGCCATTTCTCCTCAATAGCCACTTTTTGTTGCTTTTGTTTTATATGACCTAGTTTTCGCCCTTTGATGAATTATCGGAAACCGGCACGGATCAACTCCGATTTTTCGAGAATCAAGTGAGTTGGAGATTGGAACAGAGGAAACTAAAGGAATTTAACCGTGTAAAGGAAAAAATTAAACACACTGTATTTGGTGCTCTACCCCTCGTCTCTTCTTTTTGGCTTTCCCCGTACTCTACACACCAAATGAAATGGCTCGGATATGAAAGGACTAATAACTTTTCAGTTTTCATTACTGCGTCCTTTTTTAAGCTTTCAGTTTTAATTTGCGTGAATATACCTAATTTTTATTAGGGTAGAGTTATATGTTTCAAATTAAATTGCTACCAAGTTAAATTTAAGAATGTTACATAAATTTAGAGACGGCAAGTTTATATACCAAGAAGGGTACTCCTTCATCCACAGAGAAACGGTGTCCAGTTCGAGTATGGGCGTGAATCTAGATATAGTTAATTCCAATGCAGATATCAGACATCGAGTGAGGAAAAAAAAGATTTTATTAATTTGTTATTTTTAGGTTGCTTTTCCTTTAACTGAAAATCTAACCCGGCAGGACCACAACAGTTCTTTTCCGATCATTACTAATGATACTTGATTTTCACGTGCGATTTCTGATATTTTTATACGGAGTAGGTGAAGAGTGAAATGTTTCACGGGTCTCAAGGACAATGGCAGCAGTGCTTCATTTTTTTTTGCATCTTCACGTGCTATATTATTACTTTGTTTATACTAGTTCGACTTGGAAAATCTTTTCATATTCAGTTGTCTGGGGAATAAATAAGATATTTCTTATTTTTTGATTAAAAAAAGAAGAAGATATTTCTTATTTAAAGAAGTGACAAATTGTACTAACTCATTTACCATGCCTAATATATTATATGTGACAATGATGATTTTTTTTAACTATTAATTGTTAGTTTGGACAAAAATGATCAAAGCAAGTATATTGAATAATGCTTATTTCTTGCCAACTGGTGCATCTACGAGATTATAGGAGTTGGATTATAATTTTAGCACATCCAGCATGCTTATATGACCTTAAAATATTCATGTATATTCTGTCCACTCACCTTTTATTTCTTCATTATTTTACAGGCTTCCCCTGGCCCCAAAAAGATTGTGGGTGTTTTCTACAAAGCAAATGAATATGCTGAAATGAACCCCAACTTTTTGGGCTGTGCAGAAAATGCCTTGGGGATACGTGAATGGTTAGAGTCTAAAGGTCATCAGTACATAGTCACTCCTGACAAAGAA-GGACCAGATTGTG</genome_strand>
        <mrna_strand>AGTTTATACTTCTCTCTGTTCTTAGTAAGTACGAAACCCTTGTCTGTAAATGGAAAAAAAATTCCGATGGCGATGAGGCGTGTAGCTTCTACAGCAGCTCGTGCTATTGCTTCACCTTCATCCTTAGTTTTTACCAGAGAACTTCAT........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCTTTCCCTGGCCCCAAAAAGATTGTGGGTGTTTTCTACAAAGCAAATGAATATGCTGAAATGAACCCCAACTTTTTGGGCTGTGCAGAAAATGCCTTGGGGATACGTGAATGGTTAGAGTCTAAAGGTCATCAGTACATAGTCACTCCTGACCAAGAAGGGACCAGATTGTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0236E02-u8qcS/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E204751" ref_strand="+" ref_description="SGN-E204751 [cLEC-14-N18]">
      <seq>agtttattcttctctctgtttttagtaagtacgaaacccttttctgtaaatccaaaaaaaattccgatggcgatgaggcgtgtagcttctacagcagctcgtgctattgcttcaccttcatccttagtttttaccagagaacttcaggcttcccctggccccaaaaagattgtgggtgttttctacaaagcaaatgaatatgctgaaatgaaccccaactttttgggctgtgcagaaaatgccttggggatacgtgaatggttagagtctaaaggtcatcagtacatagtcac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0236E02-u8qcS/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0236E02.1" temp_strand="+" temp_description="C02HBa0236E02.1  AC215430.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0236E02 sequenced_by:kribb upload_account_name:korea">
        <position start="65243" stop="67295"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="65543" g_stop="65689" g_length="147"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="147" r_length="147" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="65690" i_stop="66849" i_length="1160">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="66850" g_stop="66995" g_length="146"/>
          <reference_exon_boundary r_type="cDNA" r_start="148" r_stop="293" r_length="146" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0236E02.1" gen_strand="+" ref_id="SGN-E204751" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>293</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0236E02.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E204751" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="65543" e_stop="65689"/>
          <exon e_start="66850" e_stop="66995"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGTTTATTCTTCTCTCTGTTTTTAGTAAGTACGAAACCCTTTTCTGTAAATCCAAAAAAAATTCCGATGGCGATGAGGCGTGTAGCTTCTACAGCAGCTCGTGCTATTGCTTCACCTTCATCCTTAGTTTTTACCAGAGAACTTCAGGTAACTAGCCATTTCTCCTCAATAGCCACTTTTTGTTGCTTTTGTTTTATATGACCTAGTTTTCGCCCTTTGATGAATTATCGGAAACCGGCACGGATCAACTCCGATTTTTCGAGAATCAAGTGAGTTGGAGATTGGAACAGAGGAAACTAAAGGAATTTAACCGTGTAAAGGAAAAAATTAAACACACTGTATTTGGTGCTCTACCCCTCGTCTCTTCTTTTTGGCTTTCCCCGTACTCTACACACCAAATGAAATGGCTCGGATATGAAAGGACTAATAACTTTTCAGTTTTCATTACTGCGTCCTTTTTTAAGCTTTCAGTTTTAATTTGCGTGAATATACCTAATTTTTATTAGGGTAGAGTTATATGTTTCAAATTAAATTGCTACCAAGTTAAATTTAAGAATGTTACATAAATTTAGAGACGGCAAGTTTATATACCAAGAAGGGTACTCCTTCATCCACAGAGAAACGGTGTCCAGTTCGAGTATGGGCGTGAATCTAGATATAGTTAATTCCAATGCAGATATCAGACATCGAGTGAGGAAAAAAAAGATTTTATTAATTTGTTATTTTTAGGTTGCTTTTCCTTTAACTGAAAATCTAACCCGGCAGGACCACAACAGTTCTTTTCCGATCATTACTAATGATACTTGATTTTCACGTGCGATTTCTGATATTTTTATACGGAGTAGGTGAAGAGTGAAATGTTTCACGGGTCTCAAGGACAATGGCAGCAGTGCTTCATTTTTTTTTGCATCTTCACGTGCTATATTATTACTTTGTTTATACTAGTTCGACTTGGAAAATCTTTTCATATTCAGTTGTCTGGGGAATAAATAAGATATTTCTTATTTTTTGATTAAAAAAAGAAGAAGATATTTCTTATTTAAAGAAGTGACAAATTGTACTAACTCATTTACCATGCCTAATATATTATATGTGACAATGATGATTTTTTTTAACTATTAATTGTTAGTTTGGACAAAAATGATCAAAGCAAGTATATTGAATAATGCTTATTTCTTGCCAACTGGTGCATCTACGAGATTATAGGAGTTGGATTATAATTTTAGCACATCCAGCATGCTTATATGACCTTAAAATATTCATGTATATTCTGTCCACTCACCTTTTATTTCTTCATTATTTTACAGGCTTCCCCTGGCCCCAAAAAGATTGTGGGTGTTTTCTACAAAGCAAATGAATATGCTGAAATGAACCCCAACTTTTTGGGCTGTGCAGAAAATGCCTTGGGGATACGTGAATGGTTAGAGTCTAAAGGTCATCAGTACATAGTCAC</genome_strand>
        <mrna_strand>AGTTTATTCTTCTCTCTGTTTTTAGTAAGTACGAAACCCTTTTCTGTAAATCCAAAAAAAATTCCGATGGCGATGAGGCGTGTAGCTTCTACAGCAGCTCGTGCTATTGCTTCACCTTCATCCTTAGTTTTTACCAGAGAACTTCAG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCTTCCCCTGGCCCCAAAAAGATTGTGGGTGTTTTCTACAAAGCAAATGAATATGCTGAAATGAACCCCAACTTTTTGGGCTGTGCAGAAAATGCCTTGGGGATACGTGAATGGTTAGAGTCTAAAGGTCATCAGTACATAGTCAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0236E02-u8qcS/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E703103" ref_strand="+" ref_description="SGN-E703103 [FA20CC07]">
      <seq>gtttattcttctctctgtttttagtaagtacgaaacccttttctgtaaatccaaaaaaattccgatggcgatgaggcgtgtagcttctacagcagctcgtgctattgcttcaccttcatccttagtttttaccagagaacttcaggcttcccctggccccaaaaagattgtgggtgttttctacaaagcaaatgaatatgctgaaatgaaccccaactttttgggctgtgcagaaaatgccttggggatacgtgaatggttagagtctaaaggtcatcagtacatagtcactcctgacaaagaaggaccagattgtgagcttgagaaacacattcctgatctccatgtgttgatttcgaccccttttcatcctgcctatgtcacggctgaaaggatcaagaaggcaaaaaatctacaacttctgctgacagctggaattggatcagatcatgttgatctgaaagctgctgctgctgctggattgacagtagcagaggtcactggaagcaatactgtctcagttgcggaagatgaactgatgcgaatcttaattcttgtccgaaatttcttacctggacatcatcaggttatcaatggggagtggaatgttgctgcaattgcgcacagagcttatgatttggaaggcaagactgttggaactgttggtgcaggacgtattggcagacttttactccagcgattgaagccatttaactgtaatctactttaccatgaccgtcttaagatggattctgagctagagaatcaaattggagcaaagtttgaggaagatctcgataagatgctctcgaaatgtgacatagtggtcatcaatacgcctcttacagagaaaaacaaaagaatgtttgacaaggaaagaattgcaaagttgaagaagggagttctaattgt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0236E02-u8qcS/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0236E02.1" temp_strand="+" temp_description="C02HBa0236E02.1  AC215430.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0236E02 sequenced_by:kribb upload_account_name:korea">
        <position start="65244" stop="69400"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="65544" g_stop="65689" g_length="146"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="145" r_length="145" r_score="0.993"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="65690" i_stop="66849" i_length="1160">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="66850" g_stop="67021" g_length="172"/>
          <reference_exon_boundary r_type="cDNA" r_start="146" r_stop="317" r_length="172" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="67022" i_stop="67764" i_length="743">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="0.987" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="67765" g_stop="68305" g_length="541"/>
          <reference_exon_boundary r_type="cDNA" r_start="318" r_stop="858" r_length="541" r_score="0.996"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="68306" i_stop="69046" i_length="741">
            <donor d_prob="0.995" d_score="0.96"/>
            <acceptor a_prob="0.768" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="69047" g_stop="69100" g_length="54"/>
          <reference_exon_boundary r_type="cDNA" r_start="859" r_stop="912" r_length="54" r_score="0.981"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0236E02.1" gen_strand="+" ref_id="SGN-E703103" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>913</cumulative_length_of_scored_exons>
        <coverage percentage="1.001" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0236E02.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E703103" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="65544" e_stop="65689"/>
          <exon e_start="66850" e_stop="67021"/>
          <exon e_start="67765" e_stop="68305"/>
          <exon e_start="69047" e_stop="69100"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTTTATTCTTCTCTCTGTTTTTAGTAAGTACGAAACCCTTTTCTGTAAATCCAAAAAAAATTCCGATGGCGATGAGGCGTGTAGCTTCTACAGCAGCTCGTGCTATTGCTTCACCTTCATCCTTAGTTTTTACCAGAGAACTTCAGGTAACTAGCCATTTCTCCTCAATAGCCACTTTTTGTTGCTTTTGTTTTATATGACCTAGTTTTCGCCCTTTGATGAATTATCGGAAACCGGCACGGATCAACTCCGATTTTTCGAGAATCAAGTGAGTTGGAGATTGGAACAGAGGAAACTAAAGGAATTTAACCGTGTAAAGGAAAAAATTAAACACACTGTATTTGGTGCTCTACCCCTCGTCTCTTCTTTTTGGCTTTCCCCGTACTCTACACACCAAATGAAATGGCTCGGATATGAAAGGACTAATAACTTTTCAGTTTTCATTACTGCGTCCTTTTTTAAGCTTTCAGTTTTAATTTGCGTGAATATACCTAATTTTTATTAGGGTAGAGTTATATGTTTCAAATTAAATTGCTACCAAGTTAAATTTAAGAATGTTACATAAATTTAGAGACGGCAAGTTTATATACCAAGAAGGGTACTCCTTCATCCACAGAGAAACGGTGTCCAGTTCGAGTATGGGCGTGAATCTAGATATAGTTAATTCCAATGCAGATATCAGACATCGAGTGAGGAAAAAAAAGATTTTATTAATTTGTTATTTTTAGGTTGCTTTTCCTTTAACTGAAAATCTAACCCGGCAGGACCACAACAGTTCTTTTCCGATCATTACTAATGATACTTGATTTTCACGTGCGATTTCTGATATTTTTATACGGAGTAGGTGAAGAGTGAAATGTTTCACGGGTCTCAAGGACAATGGCAGCAGTGCTTCATTTTTTTTTGCATCTTCACGTGCTATATTATTACTTTGTTTATACTAGTTCGACTTGGAAAATCTTTTCATATTCAGTTGTCTGGGGAATAAATAAGATATTTCTTATTTTTTGATTAAAAAAAGAAGAAGATATTTCTTATTTAAAGAAGTGACAAATTGTACTAACTCATTTACCATGCCTAATATATTATATGTGACAATGATGATTTTTTTTAACTATTAATTGTTAGTTTGGACAAAAATGATCAAAGCAAGTATATTGAATAATGCTTATTTCTTGCCAACTGGTGCATCTACGAGATTATAGGAGTTGGATTATAATTTTAGCACATCCAGCATGCTTATATGACCTTAAAATATTCATGTATATTCTGTCCACTCACCTTTTATTTCTTCATTATTTTACAGGCTTCCCCTGGCCCCAAAAAGATTGTGGGTGTTTTCTACAAAGCAAATGAATATGCTGAAATGAACCCCAACTTTTTGGGCTGTGCAGAAAATGCCTTGGGGATACGTGAATGGTTAGAGTCTAAAGGTCATCAGTACATAGTCACTCCTGACAAAGAAGGACCAGATTGTGGTTAGTTCCTGCTAATCTATAATCTCTCATGTTCTATCCATTATCCCACTGAAGCCTATGCATTTCTAAAGATAATTTCTTTACCCTTCATGCTTGTACAACTAAACACATCTTAAAAGGAGTATTTTTGCATTTAAAACATGCATATATGTGCTGAAGTTTTTTAAAAATATATGGCTCACGTGAGGAGAATATAACGGTCATAGCAGGAACATTTATTTAGATAAAGAGCAAAGCAAAGTAAACAATATTTGCTTTGTTAGTGTTGGTCCTTTGCTGCTAGTGAATTATGATCAGGACATTGTGAGGTAGTTTCTTGCAGGAGGGAAAAAAAGAGTGTATTTTACCTTGATATACAGGTGTGCATTTGCAAAACGTCTATACTTCAGGACTCAGGTGTAAGTTGTACTAGTTTGATAAGACTATGGCTAAATTTTGTAATTTAAACAAGGATTTATCAAAGTCGCAGGGGCTTGTTTAGTTGTTGAGTAGAGTGCACACATGGATGCTTTAGTGATTTTCTGATGGATGACATGCTTAGTGTAAATCCTTGCTTATTAGTATCTTTTATCATGAGAAAGAATGGTGCCCTAGTCTGACACACAAACTACTCTGTGTCTTAGTTTTTCACTGTTGAATCCTTTACTATGCTCTATGCAAAGAAATTTCTCCTGAGCTAAAGTTTTTGAGTGTGTCCATCTATAATAGCTTCTTTTTTTTTTCCCATGACTTTCTCTCTGCAGAGCTTGAGAAACACATTCCTGATCTCCATGTGTTGATTTCGACCCCTTTTCATCCTGCCTATGTCACGGCTGAAAGGATCAAGAAGGCAAAAAATCTACAACTTCTGCTGACAGCTGGAATTGGATCAGATCATGTTGATCTGAAAGCTGCTGCTGCTGCTGGATTGACAGTAGCAGAGGTCACTGGAAGCAATACTGTCTCAGTTGCGGAAGATGAACTGATGCGAATCTTAATTCTTGTCCGAAATTTCTTACCTGGACATCATCAGGTTATCAATGGGGAGTGGAATGTTGCTGCAATTGCGCACAGAGCTTATGATTTGGAAGGCAAGACTGTTGGAACTGTTGGTGCAGGACGTATTGGCAGACTTTTACTCCAGCGATTGAAGCCATTTAACTGTAATCTACTTTACCATGACCGTCTTAAGATGGATTCTGAGCTAGAGAATCAAATTGGAGCAAAGTTTGAGGAAGATCTCGATAAGATGCTCTCGAAATGTGACATAGTGGTCATCAATACGCCTCTTACAGAGAAAACAAAGTAAGGTTTCTGTTTCTGTAATTACCCGTCGTAAACCTATACAATAATATTTATTGACAAAGCTTCTTATATTCAAGTTATTTTAACAATGACTTAATTATGAAATGAACTAAGTAAGCTAAAGTGAATATTCATTGAGAATGAAATATGATATTTAGCGAAGGGAAGGAGAATCTTTGGTGTCATCGTAATTTTTTGGTATCACTCTAGATCATATATAAAGTAGTTGTATATTTAGATTCCCCGATTGTATTCCCTAAGTTAAGAAATTCTCTTGAGCATCCACCATATACTATGATACATGACTTTGGCTAAGCTCAAAAAGACTATCTCAATGATGGCCCTCCATGGATTCTCCACCTATATAAGCCACGGCTAAAGAAAAATTGCTTGGCCAAGTTGTCTTTTACCTTTGGCATGATGCAAAAAACATTTGATATTCTTTCTGTGTGAACCACTGCTACGAGTAATATGTTCTTAGAGATCATGTTTTCTTTTTGTTCTTCCTTTAATTTTCTATTTGAAGATTTGTCATCAGTTAGAGGTCATCGGTAGGATGATAGATGTTCTCAGCAACTTGTGTTGCCAGAATAATATGATTGCCAATGGAGTATTTTTAAGATTCTTGGAGATGTAAGAGTTGTTTCTGTCCATACATCACTCTTCTCATGTCACTAAGGTCATTGATTGTTTCCATGTGCTATATCGCAAATTGCTCACAATTTTAACTATGTGATCCAGAGGAATGTTTGACAAGGAAAGAATTGCAAAGTTGAAGAAGGGAGTTCTAATTGT</genome_strand>
        <mrna_strand>GTTTATTCTTCTCTCTGTTTTTAGTAAGTACGAAACCCTTTTCTGTAAATCC-AAAAAAATTCCGATGGCGATGAGGCGTGTAGCTTCTACAGCAGCTCGTGCTATTGCTTCACCTTCATCCTTAGTTTTTACCAGAGAACTTCAG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCTTCCCCTGGCCCCAAAAAGATTGTGGGTGTTTTCTACAAAGCAAATGAATATGCTGAAATGAACCCCAACTTTTTGGGCTGTGCAGAAAATGCCTTGGGGATACGTGAATGGTTAGAGTCTAAAGGTCATCAGTACATAGTCACTCCTGACAAAGAAGGACCAGATTGTG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGCTTGAGAAACACATTCCTGATCTCCATGTGTTGATTTCGACCCCTTTTCATCCTGCCTATGTCACGGCTGAAAGGATCAAGAAGGCAAAAAATCTACAACTTCTGCTGACAGCTGGAATTGGATCAGATCATGTTGATCTGAAAGCTGCTGCTGCTGCTGGATTGACAGTAGCAGAGGTCACTGGAAGCAATACTGTCTCAGTTGCGGAAGATGAACTGATGCGAATCTTAATTCTTGTCCGAAATTTCTTACCTGGACATCATCAGGTTATCAATGGGGAGTGGAATGTTGCTGCAATTGCGCACAGAGCTTATGATTTGGAAGGCAAGACTGTTGGAACTGTTGGTGCAGGACGTATTGGCAGACTTTTACTCCAGCGATTGAAGCCATTTAACTGTAATCTACTTTACCATGACCGTCTTAAGATGGATTCTGAGCTAGAGAATCAAATTGGAGCAAAGTTTGAGGAAGATCTCGATAAGATGCTCTCGAAATGTGACATAGTGGTCATCAATACGCCTCTTACAGAGAAAAACAA.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAGAATGTTTGACAAGGAAAGAATTGCAAAGTTGAAGAAGGGAGTTCTAATTGT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0236E02-u8qcS/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E478201" ref_strand="+" ref_description="SGN-E478201 [cSTD-3-J13]">
      <seq>gtttattcttctctctgtttttagcaagtacaaaaccctttgctgtaaatccaaaaaattccgatggcgatgaggcgtgtagcttctacagcagctcgtgctattgcttcaccttcatccttagtttttaccagagaacttcaggcttcccctggccccaaaaagattgtgggtgttttctacaaagcaaatgaatatgctgaaatgaaccccaactttttgggctgtgcagaaaatgccttggggatacgtgaatggttagaatctaaaggtcatcagtacatagtcactcctgacaaagaaggaccagattgtgagcttgagaaacacattcctgatctccatgtgttgatttcgaccccttttcatcctgcctatgtcacggctgaaaggatcaagaaggcaaaaaatctacaacttctgctgacagctggaattggatcagatcatgttgatctgaaagctgctgctgctgctggattgacagtagcagaggtcactggaagcaatactgtctcagttgctgaagatgaactgatgcgaatcttaattcttgtccgaaatttcttgcctggacatcatcaggttatcaatggggagtggaatgttgctgcaattgcgcacagagcttatgatttggaaggcaagactgttggaactgttggtgcaggacgtattggcagacttttactccaacgattgaagccatttaaactgtatctactttaccatgaccgtcttaagatggattctgagct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0236E02-u8qcS/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0236E02.1" temp_strand="+" temp_description="C02HBa0236E02.1  AC215430.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0236E02 sequenced_by:kribb upload_account_name:korea">
        <position start="65244" stop="68506"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="65544" g_stop="65689" g_length="146"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="144" r_length="144" r_score="0.966"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="65690" i_stop="66849" i_length="1160">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="66850" g_stop="67021" g_length="172"/>
          <reference_exon_boundary r_type="cDNA" r_start="145" r_stop="316" r_length="172" r_score="0.994"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="67022" i_stop="67764" i_length="743">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="0.987" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="67765" g_stop="68206" g_length="442"/>
          <reference_exon_boundary r_type="cDNA" r_start="317" r_stop="758" r_length="442" r_score="0.986"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0236E02.1" gen_strand="+" ref_id="SGN-E478201" ref_strand="+">
        <total_alignment_score>0.984</total_alignment_score>
        <cumulative_length_of_scored_exons>760</cumulative_length_of_scored_exons>
        <coverage percentage="1.003" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0236E02.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E478201" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="65544" e_stop="65689"/>
          <exon e_start="66850" e_stop="67021"/>
          <exon e_start="67765" e_stop="68206"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTTTATTCTTCTCTCTGTTTTTAGTAAGTACGAAACCCTTTTCTGTAAATCCAAAAAAAATTCCGATGGCGATGAGGCGTGTAGCTTCTACAGCAGCTCGTGCTATTGCTTCACCTTCATCCTTAGTTTTTACCAGAGAACTTCAGGTAACTAGCCATTTCTCCTCAATAGCCACTTTTTGTTGCTTTTGTTTTATATGACCTAGTTTTCGCCCTTTGATGAATTATCGGAAACCGGCACGGATCAACTCCGATTTTTCGAGAATCAAGTGAGTTGGAGATTGGAACAGAGGAAACTAAAGGAATTTAACCGTGTAAAGGAAAAAATTAAACACACTGTATTTGGTGCTCTACCCCTCGTCTCTTCTTTTTGGCTTTCCCCGTACTCTACACACCAAATGAAATGGCTCGGATATGAAAGGACTAATAACTTTTCAGTTTTCATTACTGCGTCCTTTTTTAAGCTTTCAGTTTTAATTTGCGTGAATATACCTAATTTTTATTAGGGTAGAGTTATATGTTTCAAATTAAATTGCTACCAAGTTAAATTTAAGAATGTTACATAAATTTAGAGACGGCAAGTTTATATACCAAGAAGGGTACTCCTTCATCCACAGAGAAACGGTGTCCAGTTCGAGTATGGGCGTGAATCTAGATATAGTTAATTCCAATGCAGATATCAGACATCGAGTGAGGAAAAAAAAGATTTTATTAATTTGTTATTTTTAGGTTGCTTTTCCTTTAACTGAAAATCTAACCCGGCAGGACCACAACAGTTCTTTTCCGATCATTACTAATGATACTTGATTTTCACGTGCGATTTCTGATATTTTTATACGGAGTAGGTGAAGAGTGAAATGTTTCACGGGTCTCAAGGACAATGGCAGCAGTGCTTCATTTTTTTTTGCATCTTCACGTGCTATATTATTACTTTGTTTATACTAGTTCGACTTGGAAAATCTTTTCATATTCAGTTGTCTGGGGAATAAATAAGATATTTCTTATTTTTTGATTAAAAAAAGAAGAAGATATTTCTTATTTAAAGAAGTGACAAATTGTACTAACTCATTTACCATGCCTAATATATTATATGTGACAATGATGATTTTTTTTAACTATTAATTGTTAGTTTGGACAAAAATGATCAAAGCAAGTATATTGAATAATGCTTATTTCTTGCCAACTGGTGCATCTACGAGATTATAGGAGTTGGATTATAATTTTAGCACATCCAGCATGCTTATATGACCTTAAAATATTCATGTATATTCTGTCCACTCACCTTTTATTTCTTCATTATTTTACAGGCTTCCCCTGGCCCCAAAAAGATTGTGGGTGTTTTCTACAAAGCAAATGAATATGCTGAAATGAACCCCAACTTTTTGGGCTGTGCAGAAAATGCCTTGGGGATACGTGAATGGTTAGAGTCTAAAGGTCATCAGTACATAGTCACTCCTGACAAAGAAGGACCAGATTGTGGTTAGTTCCTGCTAATCTATAATCTCTCATGTTCTATCCATTATCCCACTGAAGCCTATGCATTTCTAAAGATAATTTCTTTACCCTTCATGCTTGTACAACTAAACACATCTTAAAAGGAGTATTTTTGCATTTAAAACATGCATATATGTGCTGAAGTTTTTTAAAAATATATGGCTCACGTGAGGAGAATATAACGGTCATAGCAGGAACATTTATTTAGATAAAGAGCAAAGCAAAGTAAACAATATTTGCTTTGTTAGTGTTGGTCCTTTGCTGCTAGTGAATTATGATCAGGACATTGTGAGGTAGTTTCTTGCAGGAGGGAAAAAAAGAGTGTATTTTACCTTGATATACAGGTGTGCATTTGCAAAACGTCTATACTTCAGGACTCAGGTGTAAGTTGTACTAGTTTGATAAGACTATGGCTAAATTTTGTAATTTAAACAAGGATTTATCAAAGTCGCAGGGGCTTGTTTAGTTGTTGAGTAGAGTGCACACATGGATGCTTTAGTGATTTTCTGATGGATGACATGCTTAGTGTAAATCCTTGCTTATTAGTATCTTTTATCATGAGAAAGAATGGTGCCCTAGTCTGACACACAAACTACTCTGTGTCTTAGTTTTTCACTGTTGAATCCTTTACTATGCTCTATGCAAAGAAATTTCTCCTGAGCTAAAGTTTTTGAGTGTGTCCATCTATAATAGCTTCTTTTTTTTTTCCCATGACTTTCTCTCTGCAGAGCTTGAGAAACACATTCCTGATCTCCATGTGTTGATTTCGACCCCTTTTCATCCTGCCTATGTCACGGCTGAAAGGATCAAGAAGGCAAAAAATCTACAACTTCTGCTGACAGCTGGAATTGGATCAGATCATGTTGATCTGAAAGCTGCTGCTGCTGCTGGATTGACAGTAGCAGAGGTCACTGGAAGCAATACTGTCTCAGTTGCGGAAGATGAACTGATGCGAATCTTAATTCTTGTCCGAAATTTCTTACCTGGACATCATCAGGTTATCAATGGGGAGTGGAATGTTGCTGCAATTGCGCACAGAGCTTATGATTTGGAAGGCAAGACTGTTGGAACTGTTGGTGCAGGACGTATTGGCAGACTTTTACTCCAGCGATTGAAGCCATTT-AACTGTAATCTACTTTACCATGACCGTCTTAAGATGGATTCTGAGCT</genome_strand>
        <mrna_strand>GTTTATTCTTCTCTCTGTTTTTAGCAAGTACAAAACCCTTTGCTGTAAATCC--AAAAAATTCCGATGGCGATGAGGCGTGTAGCTTCTACAGCAGCTCGTGCTATTGCTTCACCTTCATCCTTAGTTTTTACCAGAGAACTTCAG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCTTCCCCTGGCCCCAAAAAGATTGTGGGTGTTTTCTACAAAGCAAATGAATATGCTGAAATGAACCCCAACTTTTTGGGCTGTGCAGAAAATGCCTTGGGGATACGTGAATGGTTAGAATCTAAAGGTCATCAGTACATAGTCACTCCTGACAAAGAAGGACCAGATTGTG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGCTTGAGAAACACATTCCTGATCTCCATGTGTTGATTTCGACCCCTTTTCATCCTGCCTATGTCACGGCTGAAAGGATCAAGAAGGCAAAAAATCTACAACTTCTGCTGACAGCTGGAATTGGATCAGATCATGTTGATCTGAAAGCTGCTGCTGCTGCTGGATTGACAGTAGCAGAGGTCACTGGAAGCAATACTGTCTCAGTTGCTGAAGATGAACTGATGCGAATCTTAATTCTTGTCCGAAATTTCTTGCCTGGACATCATCAGGTTATCAATGGGGAGTGGAATGTTGCTGCAATTGCGCACAGAGCTTATGATTTGGAAGGCAAGACTGTTGGAACTGTTGGTGCAGGACGTATTGGCAGACTTTTACTCCAACGATTGAAGCCATTTAAACTGT-ATCTACTTTACCATGACCGTCTTAAGATGGATTCTGAGCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0236E02-u8qcS/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E704572" ref_strand="+" ref_description="SGN-E704572 [FA24CF08]">
      <seq>gtttattcttctctctgtttttagtaagtacgaaacccttttctgtaaatccaaaaaaaattccgatggcgatgaggcgtgtagcttctacagcagctcgtgctattgcttcaccttcatccttagtttttaccagagaacttcaggcttcccctggccccaaaaagattgtgggtgttttctacaaagcaaatgaatatgctgaaatgaaccccaactttttgggctgtgcagaaaatgccttggggatacgtgaatggttagagtctaaaggtcatcagtacatagtcactcctgacaaagaaggaccagattgtgagcttgagaaacacattcctgatctccatgtgttgatttcgaccccttttcatcctgcctatgtcacggctgaaaggatcaagaaggcaaaaaatctacaacttctgctgacagctggaattggatcagatcatgttgatctgaaagctgctgctgctgctggattgacagtagcagaggtcactggaagcaatactgtctcagttgcggaagatgaactgatgcgaatcttaattcttgtccgaaatttcttacctggacatcatcaggttatcaatggggagtggaatgttgctgcaattgcgcacagagcttatgatttggaaggcaagactgttggaactgttggtgcaggacgtattggcagacttttactccagcgattgaagccctttaactgtaatctactttaccatgaccgtcttaagatggattctgag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0236E02-u8qcS/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0236E02.1" temp_strand="+" temp_description="C02HBa0236E02.1  AC215430.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0236E02 sequenced_by:kribb upload_account_name:korea">
        <position start="65244" stop="68504"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="65544" g_stop="65689" g_length="146"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="146" r_length="146" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="65690" i_stop="66849" i_length="1160">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="66850" g_stop="67021" g_length="172"/>
          <reference_exon_boundary r_type="cDNA" r_start="147" r_stop="318" r_length="172" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="67022" i_stop="67764" i_length="743">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="0.987" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="67765" g_stop="68204" g_length="440"/>
          <reference_exon_boundary r_type="cDNA" r_start="319" r_stop="758" r_length="440" r_score="0.998"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0236E02.1" gen_strand="+" ref_id="SGN-E704572" ref_strand="+">
        <total_alignment_score>0.999</total_alignment_score>
        <cumulative_length_of_scored_exons>758</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0236E02.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E704572" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="65544" e_stop="65689"/>
          <exon e_start="66850" e_stop="67021"/>
          <exon e_start="67765" e_stop="68204"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTTTATTCTTCTCTCTGTTTTTAGTAAGTACGAAACCCTTTTCTGTAAATCCAAAAAAAATTCCGATGGCGATGAGGCGTGTAGCTTCTACAGCAGCTCGTGCTATTGCTTCACCTTCATCCTTAGTTTTTACCAGAGAACTTCAGGTAACTAGCCATTTCTCCTCAATAGCCACTTTTTGTTGCTTTTGTTTTATATGACCTAGTTTTCGCCCTTTGATGAATTATCGGAAACCGGCACGGATCAACTCCGATTTTTCGAGAATCAAGTGAGTTGGAGATTGGAACAGAGGAAACTAAAGGAATTTAACCGTGTAAAGGAAAAAATTAAACACACTGTATTTGGTGCTCTACCCCTCGTCTCTTCTTTTTGGCTTTCCCCGTACTCTACACACCAAATGAAATGGCTCGGATATGAAAGGACTAATAACTTTTCAGTTTTCATTACTGCGTCCTTTTTTAAGCTTTCAGTTTTAATTTGCGTGAATATACCTAATTTTTATTAGGGTAGAGTTATATGTTTCAAATTAAATTGCTACCAAGTTAAATTTAAGAATGTTACATAAATTTAGAGACGGCAAGTTTATATACCAAGAAGGGTACTCCTTCATCCACAGAGAAACGGTGTCCAGTTCGAGTATGGGCGTGAATCTAGATATAGTTAATTCCAATGCAGATATCAGACATCGAGTGAGGAAAAAAAAGATTTTATTAATTTGTTATTTTTAGGTTGCTTTTCCTTTAACTGAAAATCTAACCCGGCAGGACCACAACAGTTCTTTTCCGATCATTACTAATGATACTTGATTTTCACGTGCGATTTCTGATATTTTTATACGGAGTAGGTGAAGAGTGAAATGTTTCACGGGTCTCAAGGACAATGGCAGCAGTGCTTCATTTTTTTTTGCATCTTCACGTGCTATATTATTACTTTGTTTATACTAGTTCGACTTGGAAAATCTTTTCATATTCAGTTGTCTGGGGAATAAATAAGATATTTCTTATTTTTTGATTAAAAAAAGAAGAAGATATTTCTTATTTAAAGAAGTGACAAATTGTACTAACTCATTTACCATGCCTAATATATTATATGTGACAATGATGATTTTTTTTAACTATTAATTGTTAGTTTGGACAAAAATGATCAAAGCAAGTATATTGAATAATGCTTATTTCTTGCCAACTGGTGCATCTACGAGATTATAGGAGTTGGATTATAATTTTAGCACATCCAGCATGCTTATATGACCTTAAAATATTCATGTATATTCTGTCCACTCACCTTTTATTTCTTCATTATTTTACAGGCTTCCCCTGGCCCCAAAAAGATTGTGGGTGTTTTCTACAAAGCAAATGAATATGCTGAAATGAACCCCAACTTTTTGGGCTGTGCAGAAAATGCCTTGGGGATACGTGAATGGTTAGAGTCTAAAGGTCATCAGTACATAGTCACTCCTGACAAAGAAGGACCAGATTGTGGTTAGTTCCTGCTAATCTATAATCTCTCATGTTCTATCCATTATCCCACTGAAGCCTATGCATTTCTAAAGATAATTTCTTTACCCTTCATGCTTGTACAACTAAACACATCTTAAAAGGAGTATTTTTGCATTTAAAACATGCATATATGTGCTGAAGTTTTTTAAAAATATATGGCTCACGTGAGGAGAATATAACGGTCATAGCAGGAACATTTATTTAGATAAAGAGCAAAGCAAAGTAAACAATATTTGCTTTGTTAGTGTTGGTCCTTTGCTGCTAGTGAATTATGATCAGGACATTGTGAGGTAGTTTCTTGCAGGAGGGAAAAAAAGAGTGTATTTTACCTTGATATACAGGTGTGCATTTGCAAAACGTCTATACTTCAGGACTCAGGTGTAAGTTGTACTAGTTTGATAAGACTATGGCTAAATTTTGTAATTTAAACAAGGATTTATCAAAGTCGCAGGGGCTTGTTTAGTTGTTGAGTAGAGTGCACACATGGATGCTTTAGTGATTTTCTGATGGATGACATGCTTAGTGTAAATCCTTGCTTATTAGTATCTTTTATCATGAGAAAGAATGGTGCCCTAGTCTGACACACAAACTACTCTGTGTCTTAGTTTTTCACTGTTGAATCCTTTACTATGCTCTATGCAAAGAAATTTCTCCTGAGCTAAAGTTTTTGAGTGTGTCCATCTATAATAGCTTCTTTTTTTTTTCCCATGACTTTCTCTCTGCAGAGCTTGAGAAACACATTCCTGATCTCCATGTGTTGATTTCGACCCCTTTTCATCCTGCCTATGTCACGGCTGAAAGGATCAAGAAGGCAAAAAATCTACAACTTCTGCTGACAGCTGGAATTGGATCAGATCATGTTGATCTGAAAGCTGCTGCTGCTGCTGGATTGACAGTAGCAGAGGTCACTGGAAGCAATACTGTCTCAGTTGCGGAAGATGAACTGATGCGAATCTTAATTCTTGTCCGAAATTTCTTACCTGGACATCATCAGGTTATCAATGGGGAGTGGAATGTTGCTGCAATTGCGCACAGAGCTTATGATTTGGAAGGCAAGACTGTTGGAACTGTTGGTGCAGGACGTATTGGCAGACTTTTACTCCAGCGATTGAAGCCATTTAACTGTAATCTACTTTACCATGACCGTCTTAAGATGGATTCTGAG</genome_strand>
        <mrna_strand>GTTTATTCTTCTCTCTGTTTTTAGTAAGTACGAAACCCTTTTCTGTAAATCCAAAAAAAATTCCGATGGCGATGAGGCGTGTAGCTTCTACAGCAGCTCGTGCTATTGCTTCACCTTCATCCTTAGTTTTTACCAGAGAACTTCAG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCTTCCCCTGGCCCCAAAAAGATTGTGGGTGTTTTCTACAAAGCAAATGAATATGCTGAAATGAACCCCAACTTTTTGGGCTGTGCAGAAAATGCCTTGGGGATACGTGAATGGTTAGAGTCTAAAGGTCATCAGTACATAGTCACTCCTGACAAAGAAGGACCAGATTGTG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGCTTGAGAAACACATTCCTGATCTCCATGTGTTGATTTCGACCCCTTTTCATCCTGCCTATGTCACGGCTGAAAGGATCAAGAAGGCAAAAAATCTACAACTTCTGCTGACAGCTGGAATTGGATCAGATCATGTTGATCTGAAAGCTGCTGCTGCTGCTGGATTGACAGTAGCAGAGGTCACTGGAAGCAATACTGTCTCAGTTGCGGAAGATGAACTGATGCGAATCTTAATTCTTGTCCGAAATTTCTTACCTGGACATCATCAGGTTATCAATGGGGAGTGGAATGTTGCTGCAATTGCGCACAGAGCTTATGATTTGGAAGGCAAGACTGTTGGAACTGTTGGTGCAGGACGTATTGGCAGACTTTTACTCCAGCGATTGAAGCCCTTTAACTGTAATCTACTTTACCATGACCGTCTTAAGATGGATTCTGAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0236E02-u8qcS/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E408588" ref_strand="+" ref_description="SGN-E408588 [PPI-11-F23]">
      <seq>gtttattcttctctctgtttttagcaagtacaaaaccctttgctgtaaatccaaaaaattccgatggcgatgaggcgtgtagcttctacagcagctcgtgctattgcttcaccttcatccttagtttttaccagagaacttcaggcttcccctggccccaaaaagattgtgggtgttttctacaaagcaaatgaatatgctgaaatgaaccccaactttttgggctgtgcagaaaatgccttggggatacgtgaatggttagaatctaaaggtcatcagtacatagtcactcctgacaaagaaggaccagattgtgagcttgagaaacacattcctgatctccatgtgttgatttcgaccccttttcatcctgcctatgtcacggctgaaaggatcaagaaggcaaaaaatctacaacttctgctgacagctggaattggatcagatcatgttgatctgaaagctgctgctgctgctggattgacagtagcagaggtcactggaagcaatactgtctcagttgctgaagatgaactgatgcgaatcttaattcttgtccgaaatttcttgcctggacatcatcaggttatcaatggggagtggaatgttgctgcaattgcgcacagagcttatgatttggaaggcaagactgttggaactgttggtgcangacgtattggcagacttttactccaacgattgaagccatttaactgtaatcta</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0236E02-u8qcS/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0236E02.1" temp_strand="+" temp_description="C02HBa0236E02.1  AC215430.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0236E02 sequenced_by:kribb upload_account_name:korea">
        <position start="65244" stop="68471"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="65544" g_stop="65689" g_length="146"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="144" r_length="144" r_score="0.966"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="65690" i_stop="66849" i_length="1160">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="66850" g_stop="67021" g_length="172"/>
          <reference_exon_boundary r_type="cDNA" r_start="145" r_stop="316" r_length="172" r_score="0.994"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="67022" i_stop="67764" i_length="743">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="0.987" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="67765" g_stop="68171" g_length="407"/>
          <reference_exon_boundary r_type="cDNA" r_start="317" r_stop="723" r_length="407" r_score="0.990"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0236E02.1" gen_strand="+" ref_id="SGN-E408588" ref_strand="+">
        <total_alignment_score>0.986</total_alignment_score>
        <cumulative_length_of_scored_exons>725</cumulative_length_of_scored_exons>
        <coverage percentage="1.003" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0236E02.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E408588" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="65544" e_stop="65689"/>
          <exon e_start="66850" e_stop="67021"/>
          <exon e_start="67765" e_stop="68171"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTTTATTCTTCTCTCTGTTTTTAGTAAGTACGAAACCCTTTTCTGTAAATCCAAAAAAAATTCCGATGGCGATGAGGCGTGTAGCTTCTACAGCAGCTCGTGCTATTGCTTCACCTTCATCCTTAGTTTTTACCAGAGAACTTCAGGTAACTAGCCATTTCTCCTCAATAGCCACTTTTTGTTGCTTTTGTTTTATATGACCTAGTTTTCGCCCTTTGATGAATTATCGGAAACCGGCACGGATCAACTCCGATTTTTCGAGAATCAAGTGAGTTGGAGATTGGAACAGAGGAAACTAAAGGAATTTAACCGTGTAAAGGAAAAAATTAAACACACTGTATTTGGTGCTCTACCCCTCGTCTCTTCTTTTTGGCTTTCCCCGTACTCTACACACCAAATGAAATGGCTCGGATATGAAAGGACTAATAACTTTTCAGTTTTCATTACTGCGTCCTTTTTTAAGCTTTCAGTTTTAATTTGCGTGAATATACCTAATTTTTATTAGGGTAGAGTTATATGTTTCAAATTAAATTGCTACCAAGTTAAATTTAAGAATGTTACATAAATTTAGAGACGGCAAGTTTATATACCAAGAAGGGTACTCCTTCATCCACAGAGAAACGGTGTCCAGTTCGAGTATGGGCGTGAATCTAGATATAGTTAATTCCAATGCAGATATCAGACATCGAGTGAGGAAAAAAAAGATTTTATTAATTTGTTATTTTTAGGTTGCTTTTCCTTTAACTGAAAATCTAACCCGGCAGGACCACAACAGTTCTTTTCCGATCATTACTAATGATACTTGATTTTCACGTGCGATTTCTGATATTTTTATACGGAGTAGGTGAAGAGTGAAATGTTTCACGGGTCTCAAGGACAATGGCAGCAGTGCTTCATTTTTTTTTGCATCTTCACGTGCTATATTATTACTTTGTTTATACTAGTTCGACTTGGAAAATCTTTTCATATTCAGTTGTCTGGGGAATAAATAAGATATTTCTTATTTTTTGATTAAAAAAAGAAGAAGATATTTCTTATTTAAAGAAGTGACAAATTGTACTAACTCATTTACCATGCCTAATATATTATATGTGACAATGATGATTTTTTTTAACTATTAATTGTTAGTTTGGACAAAAATGATCAAAGCAAGTATATTGAATAATGCTTATTTCTTGCCAACTGGTGCATCTACGAGATTATAGGAGTTGGATTATAATTTTAGCACATCCAGCATGCTTATATGACCTTAAAATATTCATGTATATTCTGTCCACTCACCTTTTATTTCTTCATTATTTTACAGGCTTCCCCTGGCCCCAAAAAGATTGTGGGTGTTTTCTACAAAGCAAATGAATATGCTGAAATGAACCCCAACTTTTTGGGCTGTGCAGAAAATGCCTTGGGGATACGTGAATGGTTAGAGTCTAAAGGTCATCAGTACATAGTCACTCCTGACAAAGAAGGACCAGATTGTGGTTAGTTCCTGCTAATCTATAATCTCTCATGTTCTATCCATTATCCCACTGAAGCCTATGCATTTCTAAAGATAATTTCTTTACCCTTCATGCTTGTACAACTAAACACATCTTAAAAGGAGTATTTTTGCATTTAAAACATGCATATATGTGCTGAAGTTTTTTAAAAATATATGGCTCACGTGAGGAGAATATAACGGTCATAGCAGGAACATTTATTTAGATAAAGAGCAAAGCAAAGTAAACAATATTTGCTTTGTTAGTGTTGGTCCTTTGCTGCTAGTGAATTATGATCAGGACATTGTGAGGTAGTTTCTTGCAGGAGGGAAAAAAAGAGTGTATTTTACCTTGATATACAGGTGTGCATTTGCAAAACGTCTATACTTCAGGACTCAGGTGTAAGTTGTACTAGTTTGATAAGACTATGGCTAAATTTTGTAATTTAAACAAGGATTTATCAAAGTCGCAGGGGCTTGTTTAGTTGTTGAGTAGAGTGCACACATGGATGCTTTAGTGATTTTCTGATGGATGACATGCTTAGTGTAAATCCTTGCTTATTAGTATCTTTTATCATGAGAAAGAATGGTGCCCTAGTCTGACACACAAACTACTCTGTGTCTTAGTTTTTCACTGTTGAATCCTTTACTATGCTCTATGCAAAGAAATTTCTCCTGAGCTAAAGTTTTTGAGTGTGTCCATCTATAATAGCTTCTTTTTTTTTTCCCATGACTTTCTCTCTGCAGAGCTTGAGAAACACATTCCTGATCTCCATGTGTTGATTTCGACCCCTTTTCATCCTGCCTATGTCACGGCTGAAAGGATCAAGAAGGCAAAAAATCTACAACTTCTGCTGACAGCTGGAATTGGATCAGATCATGTTGATCTGAAAGCTGCTGCTGCTGCTGGATTGACAGTAGCAGAGGTCACTGGAAGCAATACTGTCTCAGTTGCGGAAGATGAACTGATGCGAATCTTAATTCTTGTCCGAAATTTCTTACCTGGACATCATCAGGTTATCAATGGGGAGTGGAATGTTGCTGCAATTGCGCACAGAGCTTATGATTTGGAAGGCAAGACTGTTGGAACTGTTGGTGCAGGACGTATTGGCAGACTTTTACTCCAGCGATTGAAGCCATTTAACTGTAATCTA</genome_strand>
        <mrna_strand>GTTTATTCTTCTCTCTGTTTTTAGCAAGTACAAAACCCTTTGCTGTAAATCC--AAAAAATTCCGATGGCGATGAGGCGTGTAGCTTCTACAGCAGCTCGTGCTATTGCTTCACCTTCATCCTTAGTTTTTACCAGAGAACTTCAG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCTTCCCCTGGCCCCAAAAAGATTGTGGGTGTTTTCTACAAAGCAAATGAATATGCTGAAATGAACCCCAACTTTTTGGGCTGTGCAGAAAATGCCTTGGGGATACGTGAATGGTTAGAATCTAAAGGTCATCAGTACATAGTCACTCCTGACAAAGAAGGACCAGATTGTG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGCTTGAGAAACACATTCCTGATCTCCATGTGTTGATTTCGACCCCTTTTCATCCTGCCTATGTCACGGCTGAAAGGATCAAGAAGGCAAAAAATCTACAACTTCTGCTGACAGCTGGAATTGGATCAGATCATGTTGATCTGAAAGCTGCTGCTGCTGCTGGATTGACAGTAGCAGAGGTCACTGGAAGCAATACTGTCTCAGTTGCTGAAGATGAACTGATGCGAATCTTAATTCTTGTCCGAAATTTCTTGCCTGGACATCATCAGGTTATCAATGGGGAGTGGAATGTTGCTGCAATTGCGCACAGAGCTTATGATTTGGAAGGCAAGACTGTTGGAACTGTTGGTGCANGACGTATTGGCAGACTTTTACTCCAACGATTGAAGCCATTTAACTGTAATCTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0236E02-u8qcS/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E439236" ref_strand="+" ref_description="SGN-E439236 [cSTA-11-M8]">
      <seq>gtgtattcttctctctgtttttagcaaagtacaaaaccctttgctgtaaatccaaaaaattccgatggcgatgagtcgtgtagcttctacagcagctcgtgctattacttcaccttcatccttagtttttaccagagaacttcaggcttcccctggccccaaaaagattgtgggtgttttctacaaagcaaatgaatatgctgaaatgaaccccaactttttgggctgtgcagaaaatgccttggggatacgtgaatggttagaatctaaaggtcatcagtacatagtcactcctgacaaagaaggaccagattgtgagcttgagaaacacattcctgatctccatgtgttgatttcgaccccttttcatcctgcctatgtcacggctgaaaggatcaagaaggcaaaaaatctacaactactgctgacagctggaattggatcagatcatgttgatctgaaagctgctgctgctgctggattgacagtggcagaagtcactggaagcaatactgtctcagttgcggaagatgaactgatgcgaatcttaatt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0236E02-u8qcS/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0236E02.1" temp_strand="+" temp_description="C02HBa0236E02.1  AC215430.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0236E02 sequenced_by:kribb upload_account_name:korea">
        <position start="65244" stop="68300"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="65544" g_stop="65689" g_length="146"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="145" r_length="145" r_score="0.932"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="65690" i_stop="66849" i_length="1160">
            <donor d_prob="1.000" d_score="0.98"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="66850" g_stop="67021" g_length="172"/>
          <reference_exon_boundary r_type="cDNA" r_start="146" r_stop="317" r_length="172" r_score="0.994"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="67022" i_stop="67764" i_length="743">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="0.987" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="67765" g_stop="68000" g_length="236"/>
          <reference_exon_boundary r_type="cDNA" r_start="318" r_stop="553" r_length="236" r_score="0.987"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0236E02.1" gen_strand="+" ref_id="SGN-E439236" ref_strand="+">
        <total_alignment_score>0.975</total_alignment_score>
        <cumulative_length_of_scored_exons>554</cumulative_length_of_scored_exons>
        <coverage percentage="1.002" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0236E02.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E439236" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="65544" e_stop="65689"/>
          <exon e_start="66850" e_stop="67021"/>
          <exon e_start="67765" e_stop="68000"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTTTATTCTTCTCTCTGTTTTTAG-TAAGTACGAAACCCTTTTCTGTAAATCCAAAAAAAATTCCGATGGCGATGAGGCGTGTAGCTTCTACAGCAGCTCGTGCTATTGCTTCACCTTCATCCTTAGTTTTTACCAGAGAACTTCAGGTAACTAGCCATTTCTCCTCAATAGCCACTTTTTGTTGCTTTTGTTTTATATGACCTAGTTTTCGCCCTTTGATGAATTATCGGAAACCGGCACGGATCAACTCCGATTTTTCGAGAATCAAGTGAGTTGGAGATTGGAACAGAGGAAACTAAAGGAATTTAACCGTGTAAAGGAAAAAATTAAACACACTGTATTTGGTGCTCTACCCCTCGTCTCTTCTTTTTGGCTTTCCCCGTACTCTACACACCAAATGAAATGGCTCGGATATGAAAGGACTAATAACTTTTCAGTTTTCATTACTGCGTCCTTTTTTAAGCTTTCAGTTTTAATTTGCGTGAATATACCTAATTTTTATTAGGGTAGAGTTATATGTTTCAAATTAAATTGCTACCAAGTTAAATTTAAGAATGTTACATAAATTTAGAGACGGCAAGTTTATATACCAAGAAGGGTACTCCTTCATCCACAGAGAAACGGTGTCCAGTTCGAGTATGGGCGTGAATCTAGATATAGTTAATTCCAATGCAGATATCAGACATCGAGTGAGGAAAAAAAAGATTTTATTAATTTGTTATTTTTAGGTTGCTTTTCCTTTAACTGAAAATCTAACCCGGCAGGACCACAACAGTTCTTTTCCGATCATTACTAATGATACTTGATTTTCACGTGCGATTTCTGATATTTTTATACGGAGTAGGTGAAGAGTGAAATGTTTCACGGGTCTCAAGGACAATGGCAGCAGTGCTTCATTTTTTTTTGCATCTTCACGTGCTATATTATTACTTTGTTTATACTAGTTCGACTTGGAAAATCTTTTCATATTCAGTTGTCTGGGGAATAAATAAGATATTTCTTATTTTTTGATTAAAAAAAGAAGAAGATATTTCTTATTTAAAGAAGTGACAAATTGTACTAACTCATTTACCATGCCTAATATATTATATGTGACAATGATGATTTTTTTTAACTATTAATTGTTAGTTTGGACAAAAATGATCAAAGCAAGTATATTGAATAATGCTTATTTCTTGCCAACTGGTGCATCTACGAGATTATAGGAGTTGGATTATAATTTTAGCACATCCAGCATGCTTATATGACCTTAAAATATTCATGTATATTCTGTCCACTCACCTTTTATTTCTTCATTATTTTACAGGCTTCCCCTGGCCCCAAAAAGATTGTGGGTGTTTTCTACAAAGCAAATGAATATGCTGAAATGAACCCCAACTTTTTGGGCTGTGCAGAAAATGCCTTGGGGATACGTGAATGGTTAGAGTCTAAAGGTCATCAGTACATAGTCACTCCTGACAAAGAAGGACCAGATTGTGGTTAGTTCCTGCTAATCTATAATCTCTCATGTTCTATCCATTATCCCACTGAAGCCTATGCATTTCTAAAGATAATTTCTTTACCCTTCATGCTTGTACAACTAAACACATCTTAAAAGGAGTATTTTTGCATTTAAAACATGCATATATGTGCTGAAGTTTTTTAAAAATATATGGCTCACGTGAGGAGAATATAACGGTCATAGCAGGAACATTTATTTAGATAAAGAGCAAAGCAAAGTAAACAATATTTGCTTTGTTAGTGTTGGTCCTTTGCTGCTAGTGAATTATGATCAGGACATTGTGAGGTAGTTTCTTGCAGGAGGGAAAAAAAGAGTGTATTTTACCTTGATATACAGGTGTGCATTTGCAAAACGTCTATACTTCAGGACTCAGGTGTAAGTTGTACTAGTTTGATAAGACTATGGCTAAATTTTGTAATTTAAACAAGGATTTATCAAAGTCGCAGGGGCTTGTTTAGTTGTTGAGTAGAGTGCACACATGGATGCTTTAGTGATTTTCTGATGGATGACATGCTTAGTGTAAATCCTTGCTTATTAGTATCTTTTATCATGAGAAAGAATGGTGCCCTAGTCTGACACACAAACTACTCTGTGTCTTAGTTTTTCACTGTTGAATCCTTTACTATGCTCTATGCAAAGAAATTTCTCCTGAGCTAAAGTTTTTGAGTGTGTCCATCTATAATAGCTTCTTTTTTTTTTCCCATGACTTTCTCTCTGCAGAGCTTGAGAAACACATTCCTGATCTCCATGTGTTGATTTCGACCCCTTTTCATCCTGCCTATGTCACGGCTGAAAGGATCAAGAAGGCAAAAAATCTACAACTTCTGCTGACAGCTGGAATTGGATCAGATCATGTTGATCTGAAAGCTGCTGCTGCTGCTGGATTGACAGTAGCAGAGGTCACTGGAAGCAATACTGTCTCAGTTGCGGAAGATGAACTGATGCGAATCTTAATT</genome_strand>
        <mrna_strand>GTGTATTCTTCTCTCTGTTTTTAGCAAAGTACAAAACCCTTTGCTGTAAATCCAAA--AAATTCCGATGGCGATGAGTCGTGTAGCTTCTACAGCAGCTCGTGCTATTACTTCACCTTCATCCTTAGTTTTTACCAGAGAACTTCAG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCTTCCCCTGGCCCCAAAAAGATTGTGGGTGTTTTCTACAAAGCAAATGAATATGCTGAAATGAACCCCAACTTTTTGGGCTGTGCAGAAAATGCCTTGGGGATACGTGAATGGTTAGAATCTAAAGGTCATCAGTACATAGTCACTCCTGACAAAGAAGGACCAGATTGTG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGCTTGAGAAACACATTCCTGATCTCCATGTGTTGATTTCGACCCCTTTTCATCCTGCCTATGTCACGGCTGAAAGGATCAAGAAGGCAAAAAATCTACAACTACTGCTGACAGCTGGAATTGGATCAGATCATGTTGATCTGAAAGCTGCTGCTGCTGCTGGATTGACAGTGGCAGAAGTCACTGGAAGCAATACTGTCTCAGTTGCGGAAGATGAACTGATGCGAATCTTAATT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0236E02-u8qcS/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E274128" ref_strand="+" ref_description="SGN-E274128 [cLEN-8-O7]">
      <seq>gtttattcttctctctgtttttagtaagtacgaaacccttttctgtaaatccaaaaaaaattccgatggcgatgaggcgtgtagcttctacagcagctcgtgctattgcttcaccttcatccttagtttttaccagagaacttgaggcttcccctggccccaaaaagattgggggtgtgttctacaaagcaaatgaatatgctgaagtgagccccaactttttgggctgtgcagaaaatgccttggggatacgtgaatggttagagtctaaaggtcatcagtacatagtcactcctgac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0236E02-u8qcS/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0236E02.1" temp_strand="+" temp_description="C02HBa0236E02.1  AC215430.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0236E02 sequenced_by:kribb upload_account_name:korea">
        <position start="65244" stop="67302"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="65544" g_stop="65689" g_length="146"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="146" r_length="146" r_score="0.993"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="65690" i_stop="66849" i_length="1160">
            <donor d_prob="1.000" d_score="0.98"/>
            <acceptor a_prob="1.000" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="66850" g_stop="67002" g_length="153"/>
          <reference_exon_boundary r_type="cDNA" r_start="147" r_stop="299" r_length="153" r_score="0.974"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0236E02.1" gen_strand="+" ref_id="SGN-E274128" ref_strand="+">
        <total_alignment_score>0.983</total_alignment_score>
        <cumulative_length_of_scored_exons>299</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0236E02.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E274128" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="65544" e_stop="65689"/>
          <exon e_start="66850" e_stop="67002"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTTTATTCTTCTCTCTGTTTTTAGTAAGTACGAAACCCTTTTCTGTAAATCCAAAAAAAATTCCGATGGCGATGAGGCGTGTAGCTTCTACAGCAGCTCGTGCTATTGCTTCACCTTCATCCTTAGTTTTTACCAGAGAACTTCAGGTAACTAGCCATTTCTCCTCAATAGCCACTTTTTGTTGCTTTTGTTTTATATGACCTAGTTTTCGCCCTTTGATGAATTATCGGAAACCGGCACGGATCAACTCCGATTTTTCGAGAATCAAGTGAGTTGGAGATTGGAACAGAGGAAACTAAAGGAATTTAACCGTGTAAAGGAAAAAATTAAACACACTGTATTTGGTGCTCTACCCCTCGTCTCTTCTTTTTGGCTTTCCCCGTACTCTACACACCAAATGAAATGGCTCGGATATGAAAGGACTAATAACTTTTCAGTTTTCATTACTGCGTCCTTTTTTAAGCTTTCAGTTTTAATTTGCGTGAATATACCTAATTTTTATTAGGGTAGAGTTATATGTTTCAAATTAAATTGCTACCAAGTTAAATTTAAGAATGTTACATAAATTTAGAGACGGCAAGTTTATATACCAAGAAGGGTACTCCTTCATCCACAGAGAAACGGTGTCCAGTTCGAGTATGGGCGTGAATCTAGATATAGTTAATTCCAATGCAGATATCAGACATCGAGTGAGGAAAAAAAAGATTTTATTAATTTGTTATTTTTAGGTTGCTTTTCCTTTAACTGAAAATCTAACCCGGCAGGACCACAACAGTTCTTTTCCGATCATTACTAATGATACTTGATTTTCACGTGCGATTTCTGATATTTTTATACGGAGTAGGTGAAGAGTGAAATGTTTCACGGGTCTCAAGGACAATGGCAGCAGTGCTTCATTTTTTTTTGCATCTTCACGTGCTATATTATTACTTTGTTTATACTAGTTCGACTTGGAAAATCTTTTCATATTCAGTTGTCTGGGGAATAAATAAGATATTTCTTATTTTTTGATTAAAAAAAGAAGAAGATATTTCTTATTTAAAGAAGTGACAAATTGTACTAACTCATTTACCATGCCTAATATATTATATGTGACAATGATGATTTTTTTTAACTATTAATTGTTAGTTTGGACAAAAATGATCAAAGCAAGTATATTGAATAATGCTTATTTCTTGCCAACTGGTGCATCTACGAGATTATAGGAGTTGGATTATAATTTTAGCACATCCAGCATGCTTATATGACCTTAAAATATTCATGTATATTCTGTCCACTCACCTTTTATTTCTTCATTATTTTACAGGCTTCCCCTGGCCCCAAAAAGATTGTGGGTGTTTTCTACAAAGCAAATGAATATGCTGAAATGAACCCCAACTTTTTGGGCTGTGCAGAAAATGCCTTGGGGATACGTGAATGGTTAGAGTCTAAAGGTCATCAGTACATAGTCACTCCTGAC</genome_strand>
        <mrna_strand>GTTTATTCTTCTCTCTGTTTTTAGTAAGTACGAAACCCTTTTCTGTAAATCCAAAAAAAATTCCGATGGCGATGAGGCGTGTAGCTTCTACAGCAGCTCGTGCTATTGCTTCACCTTCATCCTTAGTTTTTACCAGAGAACTTGAG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCTTCCCCTGGCCCCAAAAAGATTGGGGGTGTGTTCTACAAAGCAAATGAATATGCTGAAGTGAGCCCCAACTTTTTGGGCTGTGCAGAAAATGCCTTGGGGATACGTGAATGGTTAGAGTCTAAAGGTCATCAGTACATAGTCACTCCTGAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0236E02-u8qcS/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E400513" ref_strand="+" ref_description="SGN-E400513 [cSTC-14-O11]">
      <seq>gcgtattcttctctctgtttttagcaaagtacaaaaccctttgctgtgaaatccaaaaaattccgatggcgatgagtcgtgtagcttctacagcagctcgtgctattacttcaccttcatccttagtttttaccagagaacttcaggcttcccctggccccaaaaagattgtgggtgttttctacaaaccaaatgaatatgctgaaatgaaccccaactctttgggctgggcctaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0236E02-u8qcS/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0236E02.1" temp_strand="+" temp_description="C02HBa0236E02.1  AC215430.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0236E02 sequenced_by:kribb upload_account_name:korea">
        <position start="65247" stop="67239"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="65544" g_stop="65689" g_length="146"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="146" r_length="146" r_score="0.904"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="65690" i_stop="66849" i_length="1160">
            <donor d_prob="1.000" d_score="0.98"/>
            <acceptor a_prob="1.000" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="66850" g_stop="66939" g_length="90"/>
          <reference_exon_boundary r_type="cDNA" r_start="147" r_stop="236" r_length="90" r_score="0.944"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0236E02.1" gen_strand="+" ref_id="SGN-E400513" ref_strand="+">
        <total_alignment_score>0.919</total_alignment_score>
        <cumulative_length_of_scored_exons>236</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0236E02.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E400513" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="65544" e_stop="65689"/>
          <exon e_start="66850" e_stop="66939"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTTTATTCTTCTCTCTGTTTTTAG-TAAGTACGAAACCCTTTTCTGTAAATCCAAAAAAAATTCCGATGGCGATGAGGCGTGTAGCTTCTACAGCAGCTCGTGCTATTGCTTCACCTTCATCCTTAGTTTTTACCAGAGAACTTCAGGTAACTAGCCATTTCTCCTCAATAGCCACTTTTTGTTGCTTTTGTTTTATATGACCTAGTTTTCGCCCTTTGATGAATTATCGGAAACCGGCACGGATCAACTCCGATTTTTCGAGAATCAAGTGAGTTGGAGATTGGAACAGAGGAAACTAAAGGAATTTAACCGTGTAAAGGAAAAAATTAAACACACTGTATTTGGTGCTCTACCCCTCGTCTCTTCTTTTTGGCTTTCCCCGTACTCTACACACCAAATGAAATGGCTCGGATATGAAAGGACTAATAACTTTTCAGTTTTCATTACTGCGTCCTTTTTTAAGCTTTCAGTTTTAATTTGCGTGAATATACCTAATTTTTATTAGGGTAGAGTTATATGTTTCAAATTAAATTGCTACCAAGTTAAATTTAAGAATGTTACATAAATTTAGAGACGGCAAGTTTATATACCAAGAAGGGTACTCCTTCATCCACAGAGAAACGGTGTCCAGTTCGAGTATGGGCGTGAATCTAGATATAGTTAATTCCAATGCAGATATCAGACATCGAGTGAGGAAAAAAAAGATTTTATTAATTTGTTATTTTTAGGTTGCTTTTCCTTTAACTGAAAATCTAACCCGGCAGGACCACAACAGTTCTTTTCCGATCATTACTAATGATACTTGATTTTCACGTGCGATTTCTGATATTTTTATACGGAGTAGGTGAAGAGTGAAATGTTTCACGGGTCTCAAGGACAATGGCAGCAGTGCTTCATTTTTTTTTGCATCTTCACGTGCTATATTATTACTTTGTTTATACTAGTTCGACTTGGAAAATCTTTTCATATTCAGTTGTCTGGGGAATAAATAAGATATTTCTTATTTTTTGATTAAAAAAAGAAGAAGATATTTCTTATTTAAAGAAGTGACAAATTGTACTAACTCATTTACCATGCCTAATATATTATATGTGACAATGATGATTTTTTTTAACTATTAATTGTTAGTTTGGACAAAAATGATCAAAGCAAGTATATTGAATAATGCTTATTTCTTGCCAACTGGTGCATCTACGAGATTATAGGAGTTGGATTATAATTTTAGCACATCCAGCATGCTTATATGACCTTAAAATATTCATGTATATTCTGTCCACTCACCTTTTATTTCTTCATTATTTTACAGGCTTCCCCTGGCCCCAAAAAGATTGTGGGTGTTTTCTACAAAGCAAATGAATATGCTGAAATGAACCCCAACTTTTTGGGCTGTGCAGAA</genome_strand>
        <mrna_strand>GCGTATTCTTCTCTCTGTTTTTAGCAAAGTACAAAACCCTTTGCTGTGAAATC-CAAAAAATTCCGATGGCGATGAGTCGTGTAGCTTCTACAGCAGCTCGTGCTATTACTTCACCTTCATCCTTAGTTTTTACCAGAGAACTTCAG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCTTCCCCTGGCCCCAAAAAGATTGTGGGTGTTTTCTACAAACCAAATGAATATGCTGAAATGAACCCCAACTCTTTGGGCTGGGCCTAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0236E02-u8qcS/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E400491" ref_strand="+" ref_description="SGN-E400491 [cSTC-14-G5]">
      <seq>gtttattcttctctctgtttttagcaagtacaaaaccctttgctgtgaatcgcaaaaaattccgatggcgatgaggcgtgtagcttctacagcagctcgtgctattgcttcaccttcatccttagtttttaccagagaacttcaggcttcccctggccccaaaaagattgtgggtgttttctaca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0236E02-u8qcS/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0236E02.1" temp_strand="+" temp_description="C02HBa0236E02.1  AC215430.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0236E02 sequenced_by:kribb upload_account_name:korea">
        <position start="65244" stop="67189"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="65544" g_stop="65689" g_length="146"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="145" r_length="145" r_score="0.952"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="65690" i_stop="66849" i_length="1160">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="66850" g_stop="66889" g_length="40"/>
          <reference_exon_boundary r_type="cDNA" r_start="146" r_stop="185" r_length="40" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0236E02.1" gen_strand="+" ref_id="SGN-E400491" ref_strand="+">
        <total_alignment_score>0.952</total_alignment_score>
        <cumulative_length_of_scored_exons>186</cumulative_length_of_scored_exons>
        <coverage percentage="1.005" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0236E02.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E400491" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="65544" e_stop="65689"/>
          <exon e_start="66850" e_stop="66889"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTTTATTCTTCTCTCTGTTTTTAGTAAGTACGAAACCCTTTTCTGTAAATCCAAAAAAAATTCCGATGGCGATGAGGCGTGTAGCTTCTACAGCAGCTCGTGCTATTGCTTCACCTTCATCCTTAGTTTTTACCAGAGAACTTCAGGTAACTAGCCATTTCTCCTCAATAGCCACTTTTTGTTGCTTTTGTTTTATATGACCTAGTTTTCGCCCTTTGATGAATTATCGGAAACCGGCACGGATCAACTCCGATTTTTCGAGAATCAAGTGAGTTGGAGATTGGAACAGAGGAAACTAAAGGAATTTAACCGTGTAAAGGAAAAAATTAAACACACTGTATTTGGTGCTCTACCCCTCGTCTCTTCTTTTTGGCTTTCCCCGTACTCTACACACCAAATGAAATGGCTCGGATATGAAAGGACTAATAACTTTTCAGTTTTCATTACTGCGTCCTTTTTTAAGCTTTCAGTTTTAATTTGCGTGAATATACCTAATTTTTATTAGGGTAGAGTTATATGTTTCAAATTAAATTGCTACCAAGTTAAATTTAAGAATGTTACATAAATTTAGAGACGGCAAGTTTATATACCAAGAAGGGTACTCCTTCATCCACAGAGAAACGGTGTCCAGTTCGAGTATGGGCGTGAATCTAGATATAGTTAATTCCAATGCAGATATCAGACATCGAGTGAGGAAAAAAAAGATTTTATTAATTTGTTATTTTTAGGTTGCTTTTCCTTTAACTGAAAATCTAACCCGGCAGGACCACAACAGTTCTTTTCCGATCATTACTAATGATACTTGATTTTCACGTGCGATTTCTGATATTTTTATACGGAGTAGGTGAAGAGTGAAATGTTTCACGGGTCTCAAGGACAATGGCAGCAGTGCTTCATTTTTTTTTGCATCTTCACGTGCTATATTATTACTTTGTTTATACTAGTTCGACTTGGAAAATCTTTTCATATTCAGTTGTCTGGGGAATAAATAAGATATTTCTTATTTTTTGATTAAAAAAAGAAGAAGATATTTCTTATTTAAAGAAGTGACAAATTGTACTAACTCATTTACCATGCCTAATATATTATATGTGACAATGATGATTTTTTTTAACTATTAATTGTTAGTTTGGACAAAAATGATCAAAGCAAGTATATTGAATAATGCTTATTTCTTGCCAACTGGTGCATCTACGAGATTATAGGAGTTGGATTATAATTTTAGCACATCCAGCATGCTTATATGACCTTAAAATATTCATGTATATTCTGTCCACTCACCTTTTATTTCTTCATTATTTTACAGGCTTCCCCTGGCCCCAAAAAGATTGTGGGTGTTTTCTACA</genome_strand>
        <mrna_strand>GTTTATTCTTCTCTCTGTTTTTAGCAAGTACAAAACCCTTTGCTGTGAAT-CGCAAAAAATTCCGATGGCGATGAGGCGTGTAGCTTCTACAGCAGCTCGTGCTATTGCTTCACCTTCATCCTTAGTTTTTACCAGAGAACTTCAG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCTTCCCCTGGCCCCAAAAAGATTGTGGGTGTTTTCTACA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0236E02-u8qcS/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E327943" ref_strand="+" ref_description="SGN-E327943 [cTOC-22-L13]">
      <seq>tttattcttctctctgtttttagtaagtacgaaacccttttctgtaaatccaaaaaaaattccgatggcgatgaggcgtgtagcttctacagcagctcgtgctattgcttcaccttcatccttagtttttaccagagaacttcaggcttcccctggccccaaaaagattgtgggtgttttctacaaagcaaatgaatatgctgaaatgaaccccaactttttgggctgtgcagaaaatgccttggggatacgtgaatggttagagtctaaaggtcatcagtacatagtcactcctgacaaagaaggaccagattgtgagcttgagaaacacattcctgatctccatgtgttgatttcgaccccttttcatcctgcctatgtcacggctgaaaggatcaagaaggcaaaaaatctacaacttctgctgacagctggaattggatcagatcatgttgatctgaaagctgctgctgctgctggattgacagtagcagaggtcactggaagcaatactgtctcagttgcggaagatgaactgatgcgaatcttaattcttgtccgaaatttcttacctggacatcatcaggttatcaatgggggagtggaatgttgctgcaattgcgcacagagcttatgatttgg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0236E02-u8qcS/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0236E02.1" temp_strand="+" temp_description="C02HBa0236E02.1  AC215430.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0236E02 sequenced_by:kribb upload_account_name:korea">
        <position start="65245" stop="68388"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="65545" g_stop="65689" g_length="145"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="145" r_length="145" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="65690" i_stop="66849" i_length="1160">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="66850" g_stop="67021" g_length="172"/>
          <reference_exon_boundary r_type="cDNA" r_start="146" r_stop="317" r_length="172" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="67022" i_stop="67764" i_length="743">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="0.987" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="67765" g_stop="68088" g_length="324"/>
          <reference_exon_boundary r_type="cDNA" r_start="318" r_stop="642" r_length="325" r_score="0.994"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0236E02.1" gen_strand="+" ref_id="SGN-E327943" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>641</cumulative_length_of_scored_exons>
        <coverage percentage="0.998" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0236E02.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E327943" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="65545" e_stop="65689"/>
          <exon e_start="66850" e_stop="67021"/>
          <exon e_start="67765" e_stop="68088"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTATTCTTCTCTCTGTTTTTAGTAAGTACGAAACCCTTTTCTGTAAATCCAAAAAAAATTCCGATGGCGATGAGGCGTGTAGCTTCTACAGCAGCTCGTGCTATTGCTTCACCTTCATCCTTAGTTTTTACCAGAGAACTTCAGGTAACTAGCCATTTCTCCTCAATAGCCACTTTTTGTTGCTTTTGTTTTATATGACCTAGTTTTCGCCCTTTGATGAATTATCGGAAACCGGCACGGATCAACTCCGATTTTTCGAGAATCAAGTGAGTTGGAGATTGGAACAGAGGAAACTAAAGGAATTTAACCGTGTAAAGGAAAAAATTAAACACACTGTATTTGGTGCTCTACCCCTCGTCTCTTCTTTTTGGCTTTCCCCGTACTCTACACACCAAATGAAATGGCTCGGATATGAAAGGACTAATAACTTTTCAGTTTTCATTACTGCGTCCTTTTTTAAGCTTTCAGTTTTAATTTGCGTGAATATACCTAATTTTTATTAGGGTAGAGTTATATGTTTCAAATTAAATTGCTACCAAGTTAAATTTAAGAATGTTACATAAATTTAGAGACGGCAAGTTTATATACCAAGAAGGGTACTCCTTCATCCACAGAGAAACGGTGTCCAGTTCGAGTATGGGCGTGAATCTAGATATAGTTAATTCCAATGCAGATATCAGACATCGAGTGAGGAAAAAAAAGATTTTATTAATTTGTTATTTTTAGGTTGCTTTTCCTTTAACTGAAAATCTAACCCGGCAGGACCACAACAGTTCTTTTCCGATCATTACTAATGATACTTGATTTTCACGTGCGATTTCTGATATTTTTATACGGAGTAGGTGAAGAGTGAAATGTTTCACGGGTCTCAAGGACAATGGCAGCAGTGCTTCATTTTTTTTTGCATCTTCACGTGCTATATTATTACTTTGTTTATACTAGTTCGACTTGGAAAATCTTTTCATATTCAGTTGTCTGGGGAATAAATAAGATATTTCTTATTTTTTGATTAAAAAAAGAAGAAGATATTTCTTATTTAAAGAAGTGACAAATTGTACTAACTCATTTACCATGCCTAATATATTATATGTGACAATGATGATTTTTTTTAACTATTAATTGTTAGTTTGGACAAAAATGATCAAAGCAAGTATATTGAATAATGCTTATTTCTTGCCAACTGGTGCATCTACGAGATTATAGGAGTTGGATTATAATTTTAGCACATCCAGCATGCTTATATGACCTTAAAATATTCATGTATATTCTGTCCACTCACCTTTTATTTCTTCATTATTTTACAGGCTTCCCCTGGCCCCAAAAAGATTGTGGGTGTTTTCTACAAAGCAAATGAATATGCTGAAATGAACCCCAACTTTTTGGGCTGTGCAGAAAATGCCTTGGGGATACGTGAATGGTTAGAGTCTAAAGGTCATCAGTACATAGTCACTCCTGACAAAGAAGGACCAGATTGTGGTTAGTTCCTGCTAATCTATAATCTCTCATGTTCTATCCATTATCCCACTGAAGCCTATGCATTTCTAAAGATAATTTCTTTACCCTTCATGCTTGTACAACTAAACACATCTTAAAAGGAGTATTTTTGCATTTAAAACATGCATATATGTGCTGAAGTTTTTTAAAAATATATGGCTCACGTGAGGAGAATATAACGGTCATAGCAGGAACATTTATTTAGATAAAGAGCAAAGCAAAGTAAACAATATTTGCTTTGTTAGTGTTGGTCCTTTGCTGCTAGTGAATTATGATCAGGACATTGTGAGGTAGTTTCTTGCAGGAGGGAAAAAAAGAGTGTATTTTACCTTGATATACAGGTGTGCATTTGCAAAACGTCTATACTTCAGGACTCAGGTGTAAGTTGTACTAGTTTGATAAGACTATGGCTAAATTTTGTAATTTAAACAAGGATTTATCAAAGTCGCAGGGGCTTGTTTAGTTGTTGAGTAGAGTGCACACATGGATGCTTTAGTGATTTTCTGATGGATGACATGCTTAGTGTAAATCCTTGCTTATTAGTATCTTTTATCATGAGAAAGAATGGTGCCCTAGTCTGACACACAAACTACTCTGTGTCTTAGTTTTTCACTGTTGAATCCTTTACTATGCTCTATGCAAAGAAATTTCTCCTGAGCTAAAGTTTTTGAGTGTGTCCATCTATAATAGCTTCTTTTTTTTTTCCCATGACTTTCTCTCTGCAGAGCTTGAGAAACACATTCCTGATCTCCATGTGTTGATTTCGACCCCTTTTCATCCTGCCTATGTCACGGCTGAAAGGATCAAGAAGGCAAAAAATCTACAACTTCTGCTGACAGCTGGAATTGGATCAGATCATGTTGATCTGAAAGCTGCTGCTGCTGCTGGATTGACAGTAGCAGAGGTCACTGGAAGCAATACTGTCTCAGTTGCGGAAGATGAACTGATGCGAATCTTAATTCTTGTCCGAAATTTCTTACCTGGACATCATCAGGTTATCAAT-GGGGAGTGGAATGTTGCTGCAATTGCGCACAGAGCTTATGATTTGG</genome_strand>
        <mrna_strand>TTTATTCTTCTCTCTGTTTTTAGTAAGTACGAAACCCTTTTCTGTAAATCCAAAAAAAATTCCGATGGCGATGAGGCGTGTAGCTTCTACAGCAGCTCGTGCTATTGCTTCACCTTCATCCTTAGTTTTTACCAGAGAACTTCAG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCTTCCCCTGGCCCCAAAAAGATTGTGGGTGTTTTCTACAAAGCAAATGAATATGCTGAAATGAACCCCAACTTTTTGGGCTGTGCAGAAAATGCCTTGGGGATACGTGAATGGTTAGAGTCTAAAGGTCATCAGTACATAGTCACTCCTGACAAAGAAGGACCAGATTGTG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGCTTGAGAAACACATTCCTGATCTCCATGTGTTGATTTCGACCCCTTTTCATCCTGCCTATGTCACGGCTGAAAGGATCAAGAAGGCAAAAAATCTACAACTTCTGCTGACAGCTGGAATTGGATCAGATCATGTTGATCTGAAAGCTGCTGCTGCTGCTGGATTGACAGTAGCAGAGGTCACTGGAAGCAATACTGTCTCAGTTGCGGAAGATGAACTGATGCGAATCTTAATTCTTGTCCGAAATTTCTTACCTGGACATCATCAGGTTATCAATGGGGGAGTGGAATGTTGCTGCAATTGCGCACAGAGCTTATGATTTGG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0236E02-u8qcS/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E300736" ref_strand="+" ref_description="SGN-E300736 [cLEW-8-P11]">
      <seq>tttattcttctctctgtttttagtaagtacgaaacccttttctgtaaatccaaaaaaaattccgatggcgatgaggcgtgtagcttctacagcagctcgtgctattgcttcaccttcatccttagtttttaccagagaacttcaggcttcccctggccccaaaaagattgtgggtgttttctacaaagcaaatgaatatgctgaaatgaaccccaactttttgggctgtgcagaaaatgccttggggatacgtgaatggttagagtctaaaggtcatcagtacatagtcactcctgacaaagaaggaccagattgtgagcttgagaaacacattcctgatctccatgtgttgatttcgaccccttttcatcctgcctatgtcacggctgaaaggatcaagaaggcaaaaaatctacaacttctgctgacagctggaattggatcagatcatgttgatctgaaagctgctgctgctgctggattgacagtagcagaggtcactggaagcaatactgtctcagttgcggaagatgaactgatg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0236E02-u8qcS/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0236E02.1" temp_strand="+" temp_description="C02HBa0236E02.1  AC215430.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0236E02 sequenced_by:kribb upload_account_name:korea">
        <position start="65245" stop="68288"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="65545" g_stop="65689" g_length="145"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="145" r_length="145" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="65690" i_stop="66849" i_length="1160">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="66850" g_stop="67021" g_length="172"/>
          <reference_exon_boundary r_type="cDNA" r_start="146" r_stop="317" r_length="172" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="67022" i_stop="67764" i_length="743">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="0.987" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="67765" g_stop="67988" g_length="224"/>
          <reference_exon_boundary r_type="cDNA" r_start="318" r_stop="541" r_length="224" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0236E02.1" gen_strand="+" ref_id="SGN-E300736" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>541</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0236E02.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E300736" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="65545" e_stop="65689"/>
          <exon e_start="66850" e_stop="67021"/>
          <exon e_start="67765" e_stop="67988"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTATTCTTCTCTCTGTTTTTAGTAAGTACGAAACCCTTTTCTGTAAATCCAAAAAAAATTCCGATGGCGATGAGGCGTGTAGCTTCTACAGCAGCTCGTGCTATTGCTTCACCTTCATCCTTAGTTTTTACCAGAGAACTTCAGGTAACTAGCCATTTCTCCTCAATAGCCACTTTTTGTTGCTTTTGTTTTATATGACCTAGTTTTCGCCCTTTGATGAATTATCGGAAACCGGCACGGATCAACTCCGATTTTTCGAGAATCAAGTGAGTTGGAGATTGGAACAGAGGAAACTAAAGGAATTTAACCGTGTAAAGGAAAAAATTAAACACACTGTATTTGGTGCTCTACCCCTCGTCTCTTCTTTTTGGCTTTCCCCGTACTCTACACACCAAATGAAATGGCTCGGATATGAAAGGACTAATAACTTTTCAGTTTTCATTACTGCGTCCTTTTTTAAGCTTTCAGTTTTAATTTGCGTGAATATACCTAATTTTTATTAGGGTAGAGTTATATGTTTCAAATTAAATTGCTACCAAGTTAAATTTAAGAATGTTACATAAATTTAGAGACGGCAAGTTTATATACCAAGAAGGGTACTCCTTCATCCACAGAGAAACGGTGTCCAGTTCGAGTATGGGCGTGAATCTAGATATAGTTAATTCCAATGCAGATATCAGACATCGAGTGAGGAAAAAAAAGATTTTATTAATTTGTTATTTTTAGGTTGCTTTTCCTTTAACTGAAAATCTAACCCGGCAGGACCACAACAGTTCTTTTCCGATCATTACTAATGATACTTGATTTTCACGTGCGATTTCTGATATTTTTATACGGAGTAGGTGAAGAGTGAAATGTTTCACGGGTCTCAAGGACAATGGCAGCAGTGCTTCATTTTTTTTTGCATCTTCACGTGCTATATTATTACTTTGTTTATACTAGTTCGACTTGGAAAATCTTTTCATATTCAGTTGTCTGGGGAATAAATAAGATATTTCTTATTTTTTGATTAAAAAAAGAAGAAGATATTTCTTATTTAAAGAAGTGACAAATTGTACTAACTCATTTACCATGCCTAATATATTATATGTGACAATGATGATTTTTTTTAACTATTAATTGTTAGTTTGGACAAAAATGATCAAAGCAAGTATATTGAATAATGCTTATTTCTTGCCAACTGGTGCATCTACGAGATTATAGGAGTTGGATTATAATTTTAGCACATCCAGCATGCTTATATGACCTTAAAATATTCATGTATATTCTGTCCACTCACCTTTTATTTCTTCATTATTTTACAGGCTTCCCCTGGCCCCAAAAAGATTGTGGGTGTTTTCTACAAAGCAAATGAATATGCTGAAATGAACCCCAACTTTTTGGGCTGTGCAGAAAATGCCTTGGGGATACGTGAATGGTTAGAGTCTAAAGGTCATCAGTACATAGTCACTCCTGACAAAGAAGGACCAGATTGTGGTTAGTTCCTGCTAATCTATAATCTCTCATGTTCTATCCATTATCCCACTGAAGCCTATGCATTTCTAAAGATAATTTCTTTACCCTTCATGCTTGTACAACTAAACACATCTTAAAAGGAGTATTTTTGCATTTAAAACATGCATATATGTGCTGAAGTTTTTTAAAAATATATGGCTCACGTGAGGAGAATATAACGGTCATAGCAGGAACATTTATTTAGATAAAGAGCAAAGCAAAGTAAACAATATTTGCTTTGTTAGTGTTGGTCCTTTGCTGCTAGTGAATTATGATCAGGACATTGTGAGGTAGTTTCTTGCAGGAGGGAAAAAAAGAGTGTATTTTACCTTGATATACAGGTGTGCATTTGCAAAACGTCTATACTTCAGGACTCAGGTGTAAGTTGTACTAGTTTGATAAGACTATGGCTAAATTTTGTAATTTAAACAAGGATTTATCAAAGTCGCAGGGGCTTGTTTAGTTGTTGAGTAGAGTGCACACATGGATGCTTTAGTGATTTTCTGATGGATGACATGCTTAGTGTAAATCCTTGCTTATTAGTATCTTTTATCATGAGAAAGAATGGTGCCCTAGTCTGACACACAAACTACTCTGTGTCTTAGTTTTTCACTGTTGAATCCTTTACTATGCTCTATGCAAAGAAATTTCTCCTGAGCTAAAGTTTTTGAGTGTGTCCATCTATAATAGCTTCTTTTTTTTTTCCCATGACTTTCTCTCTGCAGAGCTTGAGAAACACATTCCTGATCTCCATGTGTTGATTTCGACCCCTTTTCATCCTGCCTATGTCACGGCTGAAAGGATCAAGAAGGCAAAAAATCTACAACTTCTGCTGACAGCTGGAATTGGATCAGATCATGTTGATCTGAAAGCTGCTGCTGCTGCTGGATTGACAGTAGCAGAGGTCACTGGAAGCAATACTGTCTCAGTTGCGGAAGATGAACTGATG</genome_strand>
        <mrna_strand>TTTATTCTTCTCTCTGTTTTTAGTAAGTACGAAACCCTTTTCTGTAAATCCAAAAAAAATTCCGATGGCGATGAGGCGTGTAGCTTCTACAGCAGCTCGTGCTATTGCTTCACCTTCATCCTTAGTTTTTACCAGAGAACTTCAG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCTTCCCCTGGCCCCAAAAAGATTGTGGGTGTTTTCTACAAAGCAAATGAATATGCTGAAATGAACCCCAACTTTTTGGGCTGTGCAGAAAATGCCTTGGGGATACGTGAATGGTTAGAGTCTAAAGGTCATCAGTACATAGTCACTCCTGACAAAGAAGGACCAGATTGTG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGCTTGAGAAACACATTCCTGATCTCCATGTGTTGATTTCGACCCCTTTTCATCCTGCCTATGTCACGGCTGAAAGGATCAAGAAGGCAAAAAATCTACAACTTCTGCTGACAGCTGGAATTGGATCAGATCATGTTGATCTGAAAGCTGCTGCTGCTGCTGGATTGACAGTAGCAGAGGTCACTGGAAGCAATACTGTCTCAGTTGCGGAAGATGAACTGATG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0236E02-u8qcS/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E266897" ref_strand="+" ref_description="SGN-E266897 [cLEI-7-K3]">
      <seq>tttattcttctctctgtttttagtaagtacgaaacccttttctgtaaatccaaaaaaaattccgatggcgatgaggcgtgtagcttctacagcagctcgtgctattgcttcaccttcatccttagtttttaccagagaacttcaagcttcccctggccccaaaaagattgtgggtgttttctacaaagcaaatgaatatgctgaaatgaaccccaactttttgggctgtgcagaaaatgccttggggatacgtgaatggttagagtctaaaggtcatcagtacatagtcactcctgacaaagaaggaccagattgtgagcttgagaaacacattcctgatctccatgtgttgatttcgaccccttttcatcctgcctatgtcacggctgaaaggatcaagaaggcaaaaaatctacaacttctgctgacagctggaattggatcagatcatgttgat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0236E02-u8qcS/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0236E02.1" temp_strand="+" temp_description="C02HBa0236E02.1  AC215430.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0236E02 sequenced_by:kribb upload_account_name:korea">
        <position start="65245" stop="68204"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="65545" g_stop="65689" g_length="145"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="145" r_length="145" r_score="0.993"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="65690" i_stop="66849" i_length="1160">
            <donor d_prob="1.000" d_score="0.98"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="66850" g_stop="67021" g_length="172"/>
          <reference_exon_boundary r_type="cDNA" r_start="146" r_stop="317" r_length="172" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="67022" i_stop="67764" i_length="743">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="0.987" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="67765" g_stop="67904" g_length="140"/>
          <reference_exon_boundary r_type="cDNA" r_start="318" r_stop="457" r_length="140" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0236E02.1" gen_strand="+" ref_id="SGN-E266897" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>457</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0236E02.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E266897" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="65545" e_stop="65689"/>
          <exon e_start="66850" e_stop="67021"/>
          <exon e_start="67765" e_stop="67904"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTATTCTTCTCTCTGTTTTTAGTAAGTACGAAACCCTTTTCTGTAAATCCAAAAAAAATTCCGATGGCGATGAGGCGTGTAGCTTCTACAGCAGCTCGTGCTATTGCTTCACCTTCATCCTTAGTTTTTACCAGAGAACTTCAGGTAACTAGCCATTTCTCCTCAATAGCCACTTTTTGTTGCTTTTGTTTTATATGACCTAGTTTTCGCCCTTTGATGAATTATCGGAAACCGGCACGGATCAACTCCGATTTTTCGAGAATCAAGTGAGTTGGAGATTGGAACAGAGGAAACTAAAGGAATTTAACCGTGTAAAGGAAAAAATTAAACACACTGTATTTGGTGCTCTACCCCTCGTCTCTTCTTTTTGGCTTTCCCCGTACTCTACACACCAAATGAAATGGCTCGGATATGAAAGGACTAATAACTTTTCAGTTTTCATTACTGCGTCCTTTTTTAAGCTTTCAGTTTTAATTTGCGTGAATATACCTAATTTTTATTAGGGTAGAGTTATATGTTTCAAATTAAATTGCTACCAAGTTAAATTTAAGAATGTTACATAAATTTAGAGACGGCAAGTTTATATACCAAGAAGGGTACTCCTTCATCCACAGAGAAACGGTGTCCAGTTCGAGTATGGGCGTGAATCTAGATATAGTTAATTCCAATGCAGATATCAGACATCGAGTGAGGAAAAAAAAGATTTTATTAATTTGTTATTTTTAGGTTGCTTTTCCTTTAACTGAAAATCTAACCCGGCAGGACCACAACAGTTCTTTTCCGATCATTACTAATGATACTTGATTTTCACGTGCGATTTCTGATATTTTTATACGGAGTAGGTGAAGAGTGAAATGTTTCACGGGTCTCAAGGACAATGGCAGCAGTGCTTCATTTTTTTTTGCATCTTCACGTGCTATATTATTACTTTGTTTATACTAGTTCGACTTGGAAAATCTTTTCATATTCAGTTGTCTGGGGAATAAATAAGATATTTCTTATTTTTTGATTAAAAAAAGAAGAAGATATTTCTTATTTAAAGAAGTGACAAATTGTACTAACTCATTTACCATGCCTAATATATTATATGTGACAATGATGATTTTTTTTAACTATTAATTGTTAGTTTGGACAAAAATGATCAAAGCAAGTATATTGAATAATGCTTATTTCTTGCCAACTGGTGCATCTACGAGATTATAGGAGTTGGATTATAATTTTAGCACATCCAGCATGCTTATATGACCTTAAAATATTCATGTATATTCTGTCCACTCACCTTTTATTTCTTCATTATTTTACAGGCTTCCCCTGGCCCCAAAAAGATTGTGGGTGTTTTCTACAAAGCAAATGAATATGCTGAAATGAACCCCAACTTTTTGGGCTGTGCAGAAAATGCCTTGGGGATACGTGAATGGTTAGAGTCTAAAGGTCATCAGTACATAGTCACTCCTGACAAAGAAGGACCAGATTGTGGTTAGTTCCTGCTAATCTATAATCTCTCATGTTCTATCCATTATCCCACTGAAGCCTATGCATTTCTAAAGATAATTTCTTTACCCTTCATGCTTGTACAACTAAACACATCTTAAAAGGAGTATTTTTGCATTTAAAACATGCATATATGTGCTGAAGTTTTTTAAAAATATATGGCTCACGTGAGGAGAATATAACGGTCATAGCAGGAACATTTATTTAGATAAAGAGCAAAGCAAAGTAAACAATATTTGCTTTGTTAGTGTTGGTCCTTTGCTGCTAGTGAATTATGATCAGGACATTGTGAGGTAGTTTCTTGCAGGAGGGAAAAAAAGAGTGTATTTTACCTTGATATACAGGTGTGCATTTGCAAAACGTCTATACTTCAGGACTCAGGTGTAAGTTGTACTAGTTTGATAAGACTATGGCTAAATTTTGTAATTTAAACAAGGATTTATCAAAGTCGCAGGGGCTTGTTTAGTTGTTGAGTAGAGTGCACACATGGATGCTTTAGTGATTTTCTGATGGATGACATGCTTAGTGTAAATCCTTGCTTATTAGTATCTTTTATCATGAGAAAGAATGGTGCCCTAGTCTGACACACAAACTACTCTGTGTCTTAGTTTTTCACTGTTGAATCCTTTACTATGCTCTATGCAAAGAAATTTCTCCTGAGCTAAAGTTTTTGAGTGTGTCCATCTATAATAGCTTCTTTTTTTTTTCCCATGACTTTCTCTCTGCAGAGCTTGAGAAACACATTCCTGATCTCCATGTGTTGATTTCGACCCCTTTTCATCCTGCCTATGTCACGGCTGAAAGGATCAAGAAGGCAAAAAATCTACAACTTCTGCTGACAGCTGGAATTGGATCAGATCATGTTGAT</genome_strand>
        <mrna_strand>TTTATTCTTCTCTCTGTTTTTAGTAAGTACGAAACCCTTTTCTGTAAATCCAAAAAAAATTCCGATGGCGATGAGGCGTGTAGCTTCTACAGCAGCTCGTGCTATTGCTTCACCTTCATCCTTAGTTTTTACCAGAGAACTTCAA........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCTTCCCCTGGCCCCAAAAAGATTGTGGGTGTTTTCTACAAAGCAAATGAATATGCTGAAATGAACCCCAACTTTTTGGGCTGTGCAGAAAATGCCTTGGGGATACGTGAATGGTTAGAGTCTAAAGGTCATCAGTACATAGTCACTCCTGACAAAGAAGGACCAGATTGTG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGCTTGAGAAACACATTCCTGATCTCCATGTGTTGATTTCGACCCCTTTTCATCCTGCCTATGTCACGGCTGAAAGGATCAAGAAGGCAAAAAATCTACAACTTCTGCTGACAGCTGGAATTGGATCAGATCATGTTGAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0236E02-u8qcS/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E293785" ref_strand="+" ref_description="SGN-E293785 [cLET-37-A22]">
      <seq>tttattcttctctctgtttttagtaagtacgaaacccttttctgtaaatccaaaaaaaattccgatggcgatgaggcgtgtagcttctacagcagctcgtgctattgcttcaccttcatccttagtttttaccagagaacttcaggcttcccctggccccaaaaagatt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0236E02-u8qcS/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0236E02.1" temp_strand="+" temp_description="C02HBa0236E02.1  AC215430.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0236E02 sequenced_by:kribb upload_account_name:korea">
        <position start="65245" stop="67173"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="65545" g_stop="65689" g_length="145"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="145" r_length="145" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="65690" i_stop="66849" i_length="1160">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="66850" g_stop="66873" g_length="24"/>
          <reference_exon_boundary r_type="cDNA" r_start="146" r_stop="169" r_length="24" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0236E02.1" gen_strand="+" ref_id="SGN-E293785" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>169</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0236E02.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E293785" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="65545" e_stop="65689"/>
          <exon e_start="66850" e_stop="66873"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTATTCTTCTCTCTGTTTTTAGTAAGTACGAAACCCTTTTCTGTAAATCCAAAAAAAATTCCGATGGCGATGAGGCGTGTAGCTTCTACAGCAGCTCGTGCTATTGCTTCACCTTCATCCTTAGTTTTTACCAGAGAACTTCAGGTAACTAGCCATTTCTCCTCAATAGCCACTTTTTGTTGCTTTTGTTTTATATGACCTAGTTTTCGCCCTTTGATGAATTATCGGAAACCGGCACGGATCAACTCCGATTTTTCGAGAATCAAGTGAGTTGGAGATTGGAACAGAGGAAACTAAAGGAATTTAACCGTGTAAAGGAAAAAATTAAACACACTGTATTTGGTGCTCTACCCCTCGTCTCTTCTTTTTGGCTTTCCCCGTACTCTACACACCAAATGAAATGGCTCGGATATGAAAGGACTAATAACTTTTCAGTTTTCATTACTGCGTCCTTTTTTAAGCTTTCAGTTTTAATTTGCGTGAATATACCTAATTTTTATTAGGGTAGAGTTATATGTTTCAAATTAAATTGCTACCAAGTTAAATTTAAGAATGTTACATAAATTTAGAGACGGCAAGTTTATATACCAAGAAGGGTACTCCTTCATCCACAGAGAAACGGTGTCCAGTTCGAGTATGGGCGTGAATCTAGATATAGTTAATTCCAATGCAGATATCAGACATCGAGTGAGGAAAAAAAAGATTTTATTAATTTGTTATTTTTAGGTTGCTTTTCCTTTAACTGAAAATCTAACCCGGCAGGACCACAACAGTTCTTTTCCGATCATTACTAATGATACTTGATTTTCACGTGCGATTTCTGATATTTTTATACGGAGTAGGTGAAGAGTGAAATGTTTCACGGGTCTCAAGGACAATGGCAGCAGTGCTTCATTTTTTTTTGCATCTTCACGTGCTATATTATTACTTTGTTTATACTAGTTCGACTTGGAAAATCTTTTCATATTCAGTTGTCTGGGGAATAAATAAGATATTTCTTATTTTTTGATTAAAAAAAGAAGAAGATATTTCTTATTTAAAGAAGTGACAAATTGTACTAACTCATTTACCATGCCTAATATATTATATGTGACAATGATGATTTTTTTTAACTATTAATTGTTAGTTTGGACAAAAATGATCAAAGCAAGTATATTGAATAATGCTTATTTCTTGCCAACTGGTGCATCTACGAGATTATAGGAGTTGGATTATAATTTTAGCACATCCAGCATGCTTATATGACCTTAAAATATTCATGTATATTCTGTCCACTCACCTTTTATTTCTTCATTATTTTACAGGCTTCCCCTGGCCCCAAAAAGATT</genome_strand>
        <mrna_strand>TTTATTCTTCTCTCTGTTTTTAGTAAGTACGAAACCCTTTTCTGTAAATCCAAAAAAAATTCCGATGGCGATGAGGCGTGTAGCTTCTACAGCAGCTCGTGCTATTGCTTCACCTTCATCCTTAGTTTTTACCAGAGAACTTCAG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCTTCCCCTGGCCCCAAAAAGATT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0236E02-u8qcS/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E557374" ref_strand="+" ref_description="SGN-E557374 [16163]">
      <seq>gtattcttctctctgtttttagcaaagtacaaaaccctttgctgtaaatccaaaaaattccgatggcgatgagtcgtgtagcttctacagcagctcgtgctattacttcaccttcatccttagtttttaccagagaacttcaggcttcccctggccccaaaaagattgtgggtgttttctacaaagcaaatgaatatgctgaaatgaaccccaactttttgggctgtgcagaaaatgccttggggatacgtgaatggttagaatctaaaggtcatcagtacatagtcactcctgacaaagaaggaccagattgtgagcttgagaaacacattcctgatctccatgtgttgatttcgaccccttttcatcctgcctatgtcacggctgaaaggatcaagaaggcaaaaaatctacaactactgctgacagctggaattggatcagatcatgttgatctgaaagctgctgctgctgctggattgacagtggcagaagtcactggaagcaatactgtctcagttgcggaagatgaactgatgcgaatcttaattcttgtccgaaatttcttgcctgggacatcatcaggtttatcaatggggagtgggaatgtttgctgcaaattgcgcaacagagcttatgagtttgaaggccagactgttggaacctgttggtgcagagacgttttgggcagaactttttactcc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0236E02-u8qcS/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0236E02.1" temp_strand="+" temp_description="C02HBa0236E02.1  AC215430.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0236E02 sequenced_by:kribb upload_account_name:korea">
        <position start="65247" stop="68442"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="65546" g_stop="65689" g_length="144"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="143" r_length="143" r_score="0.931"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="65690" i_stop="66849" i_length="1160">
            <donor d_prob="1.000" d_score="0.98"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="66850" g_stop="67021" g_length="172"/>
          <reference_exon_boundary r_type="cDNA" r_start="144" r_stop="315" r_length="172" r_score="0.994"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="67022" i_stop="67764" i_length="743">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="0.987" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="67765" g_stop="68142" g_length="378"/>
          <reference_exon_boundary r_type="cDNA" r_start="316" r_stop="704" r_length="389" r_score="0.921"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0236E02.1" gen_strand="+" ref_id="SGN-E557374" ref_strand="+">
        <total_alignment_score>0.941</total_alignment_score>
        <cumulative_length_of_scored_exons>694</cumulative_length_of_scored_exons>
        <coverage percentage="0.986" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0236E02.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E557374" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="65546" e_stop="65689"/>
          <exon e_start="66850" e_stop="67021"/>
          <exon e_start="67765" e_stop="68142"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTATTCTTCTCTCTGTTTTTAG-TAAGTACGAAACCCTTTTCTGTAAATCCAAAAAAAATTCCGATGGCGATGAGGCGTGTAGCTTCTACAGCAGCTCGTGCTATTGCTTCACCTTCATCCTTAGTTTTTACCAGAGAACTTCAGGTAACTAGCCATTTCTCCTCAATAGCCACTTTTTGTTGCTTTTGTTTTATATGACCTAGTTTTCGCCCTTTGATGAATTATCGGAAACCGGCACGGATCAACTCCGATTTTTCGAGAATCAAGTGAGTTGGAGATTGGAACAGAGGAAACTAAAGGAATTTAACCGTGTAAAGGAAAAAATTAAACACACTGTATTTGGTGCTCTACCCCTCGTCTCTTCTTTTTGGCTTTCCCCGTACTCTACACACCAAATGAAATGGCTCGGATATGAAAGGACTAATAACTTTTCAGTTTTCATTACTGCGTCCTTTTTTAAGCTTTCAGTTTTAATTTGCGTGAATATACCTAATTTTTATTAGGGTAGAGTTATATGTTTCAAATTAAATTGCTACCAAGTTAAATTTAAGAATGTTACATAAATTTAGAGACGGCAAGTTTATATACCAAGAAGGGTACTCCTTCATCCACAGAGAAACGGTGTCCAGTTCGAGTATGGGCGTGAATCTAGATATAGTTAATTCCAATGCAGATATCAGACATCGAGTGAGGAAAAAAAAGATTTTATTAATTTGTTATTTTTAGGTTGCTTTTCCTTTAACTGAAAATCTAACCCGGCAGGACCACAACAGTTCTTTTCCGATCATTACTAATGATACTTGATTTTCACGTGCGATTTCTGATATTTTTATACGGAGTAGGTGAAGAGTGAAATGTTTCACGGGTCTCAAGGACAATGGCAGCAGTGCTTCATTTTTTTTTGCATCTTCACGTGCTATATTATTACTTTGTTTATACTAGTTCGACTTGGAAAATCTTTTCATATTCAGTTGTCTGGGGAATAAATAAGATATTTCTTATTTTTTGATTAAAAAAAGAAGAAGATATTTCTTATTTAAAGAAGTGACAAATTGTACTAACTCATTTACCATGCCTAATATATTATATGTGACAATGATGATTTTTTTTAACTATTAATTGTTAGTTTGGACAAAAATGATCAAAGCAAGTATATTGAATAATGCTTATTTCTTGCCAACTGGTGCATCTACGAGATTATAGGAGTTGGATTATAATTTTAGCACATCCAGCATGCTTATATGACCTTAAAATATTCATGTATATTCTGTCCACTCACCTTTTATTTCTTCATTATTTTACAGGCTTCCCCTGGCCCCAAAAAGATTGTGGGTGTTTTCTACAAAGCAAATGAATATGCTGAAATGAACCCCAACTTTTTGGGCTGTGCAGAAAATGCCTTGGGGATACGTGAATGGTTAGAGTCTAAAGGTCATCAGTACATAGTCACTCCTGACAAAGAAGGACCAGATTGTGGTTAGTTCCTGCTAATCTATAATCTCTCATGTTCTATCCATTATCCCACTGAAGCCTATGCATTTCTAAAGATAATTTCTTTACCCTTCATGCTTGTACAACTAAACACATCTTAAAAGGAGTATTTTTGCATTTAAAACATGCATATATGTGCTGAAGTTTTTTAAAAATATATGGCTCACGTGAGGAGAATATAACGGTCATAGCAGGAACATTTATTTAGATAAAGAGCAAAGCAAAGTAAACAATATTTGCTTTGTTAGTGTTGGTCCTTTGCTGCTAGTGAATTATGATCAGGACATTGTGAGGTAGTTTCTTGCAGGAGGGAAAAAAAGAGTGTATTTTACCTTGATATACAGGTGTGCATTTGCAAAACGTCTATACTTCAGGACTCAGGTGTAAGTTGTACTAGTTTGATAAGACTATGGCTAAATTTTGTAATTTAAACAAGGATTTATCAAAGTCGCAGGGGCTTGTTTAGTTGTTGAGTAGAGTGCACACATGGATGCTTTAGTGATTTTCTGATGGATGACATGCTTAGTGTAAATCCTTGCTTATTAGTATCTTTTATCATGAGAAAGAATGGTGCCCTAGTCTGACACACAAACTACTCTGTGTCTTAGTTTTTCACTGTTGAATCCTTTACTATGCTCTATGCAAAGAAATTTCTCCTGAGCTAAAGTTTTTGAGTGTGTCCATCTATAATAGCTTCTTTTTTTTTTCCCATGACTTTCTCTCTGCAGAGCTTGAGAAACACATTCCTGATCTCCATGTGTTGATTTCGACCCCTTTTCATCCTGCCTATGTCACGGCTGAAAGGATCAAGAAGGCAAAAAATCTACAACTTCTGCTGACAGCTGGAATTGGATCAGATCATGTTGATCTGAAAGCTGCTGCTGCTGCTGGATTGACAGTAGCAGAGGTCACTGGAAGCAATACTGTCTCAGTTGCGGAAGATGAACTGATGCGAATCTTAATTCTTGTCCGAAATTTCTTACCT-GGACATCATCAGG-TTATCAATGGGGAGT-GGAATG-TTGCTGC-AATTGCGC-ACAGAGCTTATGATTTGGAAGGCAAGACTGTTGGAA-CTGTTGGTGCAG-GACGTATT-GGCAG-AC-TTTTACTCC</genome_strand>
        <mrna_strand>GTATTCTTCTCTCTGTTTTTAGCAAAGTACAAAACCCTTTGCTGTAAATCCAAAAA--ATTCCGATGGCGATGAGTCGTGTAGCTTCTACAGCAGCTCGTGCTATTACTTCACCTTCATCCTTAGTTTTTACCAGAGAACTTCAG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCTTCCCCTGGCCCCAAAAAGATTGTGGGTGTTTTCTACAAAGCAAATGAATATGCTGAAATGAACCCCAACTTTTTGGGCTGTGCAGAAAATGCCTTGGGGATACGTGAATGGTTAGAATCTAAAGGTCATCAGTACATAGTCACTCCTGACAAAGAAGGACCAGATTGTG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGCTTGAGAAACACATTCCTGATCTCCATGTGTTGATTTCGACCCCTTTTCATCCTGCCTATGTCACGGCTGAAAGGATCAAGAAGGCAAAAAATCTACAACTACTGCTGACAGCTGGAATTGGATCAGATCATGTTGATCTGAAAGCTGCTGCTGCTGCTGGATTGACAGTGGCAGAAGTCACTGGAAGCAATACTGTCTCAGTTGCGGAAGATGAACTGATGCGAATCTTAATTCTTGTCCGAAATTTCTTGCCTGGGACATCATCAGGTTTATCAATGGGGAGTGGGAATGTTTGCTGCAAATTGCGCAACAGAGCTTATGAGTTTGAAGGCCAGACTGTTGGAACCTGTTGGTGCAGAGACGTTTTGGGCAGAACTTTTTACTCC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0236E02-u8qcS/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E446945" ref_strand="+" ref_description="SGN-E446945 [cSTA-23-N9]">
      <seq>gtattcttctctctgtttttaccaagtacaaaaccctttgctgtaaatccaaaaaattccgatggcgatgagtcgtgtagcttctacagcagctcgtgctattacttcaccttcatccttagtttttaccagagaacttcaggcttcccctggccccaaaaagattgtgggtgttttctacaaagcaaatgaatatgctgaaatgaaccccaactttttgggctgtgcagaaaatgccttggggatacgtgaatggttagaatctaaaggtcatcagtacatagtcactcctgacaaagaaggaccggattgtgagcttgagaaacacattcctgatctccatgtgttgatttcgaccccttttcatcctgcctatgtcacggctgaaaggatcaagaaggcaaaaaatctacaactactgctgacagctggaattggatcagatcatgttgatctgaaagctgctgctgctgctggattgacagtagcagaggtcactggaagcaatactgtctcagttgcggaagatgaactgatgcgaatcttaattcttgtccgaaatttcttgcctggacatcatcaggttatcaatggggagtggaatgttgctgcaattgcgcacagagcttatgatttg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0236E02-u8qcS/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0236E02.1" temp_strand="+" temp_description="C02HBa0236E02.1  AC215430.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0236E02 sequenced_by:kribb upload_account_name:korea">
        <position start="65247" stop="68387"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="65546" g_stop="65689" g_length="144"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="142" r_length="142" r_score="0.938"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="65690" i_stop="66849" i_length="1160">
            <donor d_prob="1.000" d_score="0.98"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="66850" g_stop="67021" g_length="172"/>
          <reference_exon_boundary r_type="cDNA" r_start="143" r_stop="314" r_length="172" r_score="0.988"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="67022" i_stop="67764" i_length="743">
            <donor d_prob="0.994" d_score="0.98"/>
            <acceptor a_prob="0.987" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="67765" g_stop="68087" g_length="323"/>
          <reference_exon_boundary r_type="cDNA" r_start="315" r_stop="637" r_length="323" r_score="0.994"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0236E02.1" gen_strand="+" ref_id="SGN-E446945" ref_strand="+">
        <total_alignment_score>0.980</total_alignment_score>
        <cumulative_length_of_scored_exons>639</cumulative_length_of_scored_exons>
        <coverage percentage="1.003" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0236E02.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E446945" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="65546" e_stop="65689"/>
          <exon e_start="66850" e_stop="67021"/>
          <exon e_start="67765" e_stop="68087"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTATTCTTCTCTCTGTTTTTAGTAAGTACGAAACCCTTTTCTGTAAATCCAAAAAAAATTCCGATGGCGATGAGGCGTGTAGCTTCTACAGCAGCTCGTGCTATTGCTTCACCTTCATCCTTAGTTTTTACCAGAGAACTTCAGGTAACTAGCCATTTCTCCTCAATAGCCACTTTTTGTTGCTTTTGTTTTATATGACCTAGTTTTCGCCCTTTGATGAATTATCGGAAACCGGCACGGATCAACTCCGATTTTTCGAGAATCAAGTGAGTTGGAGATTGGAACAGAGGAAACTAAAGGAATTTAACCGTGTAAAGGAAAAAATTAAACACACTGTATTTGGTGCTCTACCCCTCGTCTCTTCTTTTTGGCTTTCCCCGTACTCTACACACCAAATGAAATGGCTCGGATATGAAAGGACTAATAACTTTTCAGTTTTCATTACTGCGTCCTTTTTTAAGCTTTCAGTTTTAATTTGCGTGAATATACCTAATTTTTATTAGGGTAGAGTTATATGTTTCAAATTAAATTGCTACCAAGTTAAATTTAAGAATGTTACATAAATTTAGAGACGGCAAGTTTATATACCAAGAAGGGTACTCCTTCATCCACAGAGAAACGGTGTCCAGTTCGAGTATGGGCGTGAATCTAGATATAGTTAATTCCAATGCAGATATCAGACATCGAGTGAGGAAAAAAAAGATTTTATTAATTTGTTATTTTTAGGTTGCTTTTCCTTTAACTGAAAATCTAACCCGGCAGGACCACAACAGTTCTTTTCCGATCATTACTAATGATACTTGATTTTCACGTGCGATTTCTGATATTTTTATACGGAGTAGGTGAAGAGTGAAATGTTTCACGGGTCTCAAGGACAATGGCAGCAGTGCTTCATTTTTTTTTGCATCTTCACGTGCTATATTATTACTTTGTTTATACTAGTTCGACTTGGAAAATCTTTTCATATTCAGTTGTCTGGGGAATAAATAAGATATTTCTTATTTTTTGATTAAAAAAAGAAGAAGATATTTCTTATTTAAAGAAGTGACAAATTGTACTAACTCATTTACCATGCCTAATATATTATATGTGACAATGATGATTTTTTTTAACTATTAATTGTTAGTTTGGACAAAAATGATCAAAGCAAGTATATTGAATAATGCTTATTTCTTGCCAACTGGTGCATCTACGAGATTATAGGAGTTGGATTATAATTTTAGCACATCCAGCATGCTTATATGACCTTAAAATATTCATGTATATTCTGTCCACTCACCTTTTATTTCTTCATTATTTTACAGGCTTCCCCTGGCCCCAAAAAGATTGTGGGTGTTTTCTACAAAGCAAATGAATATGCTGAAATGAACCCCAACTTTTTGGGCTGTGCAGAAAATGCCTTGGGGATACGTGAATGGTTAGAGTCTAAAGGTCATCAGTACATAGTCACTCCTGACAAAGAAGGACCAGATTGTGGTTAGTTCCTGCTAATCTATAATCTCTCATGTTCTATCCATTATCCCACTGAAGCCTATGCATTTCTAAAGATAATTTCTTTACCCTTCATGCTTGTACAACTAAACACATCTTAAAAGGAGTATTTTTGCATTTAAAACATGCATATATGTGCTGAAGTTTTTTAAAAATATATGGCTCACGTGAGGAGAATATAACGGTCATAGCAGGAACATTTATTTAGATAAAGAGCAAAGCAAAGTAAACAATATTTGCTTTGTTAGTGTTGGTCCTTTGCTGCTAGTGAATTATGATCAGGACATTGTGAGGTAGTTTCTTGCAGGAGGGAAAAAAAGAGTGTATTTTACCTTGATATACAGGTGTGCATTTGCAAAACGTCTATACTTCAGGACTCAGGTGTAAGTTGTACTAGTTTGATAAGACTATGGCTAAATTTTGTAATTTAAACAAGGATTTATCAAAGTCGCAGGGGCTTGTTTAGTTGTTGAGTAGAGTGCACACATGGATGCTTTAGTGATTTTCTGATGGATGACATGCTTAGTGTAAATCCTTGCTTATTAGTATCTTTTATCATGAGAAAGAATGGTGCCCTAGTCTGACACACAAACTACTCTGTGTCTTAGTTTTTCACTGTTGAATCCTTTACTATGCTCTATGCAAAGAAATTTCTCCTGAGCTAAAGTTTTTGAGTGTGTCCATCTATAATAGCTTCTTTTTTTTTTCCCATGACTTTCTCTCTGCAGAGCTTGAGAAACACATTCCTGATCTCCATGTGTTGATTTCGACCCCTTTTCATCCTGCCTATGTCACGGCTGAAAGGATCAAGAAGGCAAAAAATCTACAACTTCTGCTGACAGCTGGAATTGGATCAGATCATGTTGATCTGAAAGCTGCTGCTGCTGCTGGATTGACAGTAGCAGAGGTCACTGGAAGCAATACTGTCTCAGTTGCGGAAGATGAACTGATGCGAATCTTAATTCTTGTCCGAAATTTCTTACCTGGACATCATCAGGTTATCAATGGGGAGTGGAATGTTGCTGCAATTGCGCACAGAGCTTATGATTTG</genome_strand>
        <mrna_strand>GTATTCTTCTCTCTGTTTTTACCAAGTACAAAACCCTTTGCTGTAAATCC--AAAAAATTCCGATGGCGATGAGTCGTGTAGCTTCTACAGCAGCTCGTGCTATTACTTCACCTTCATCCTTAGTTTTTACCAGAGAACTTCAG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCTTCCCCTGGCCCCAAAAAGATTGTGGGTGTTTTCTACAAAGCAAATGAATATGCTGAAATGAACCCCAACTTTTTGGGCTGTGCAGAAAATGCCTTGGGGATACGTGAATGGTTAGAATCTAAAGGTCATCAGTACATAGTCACTCCTGACAAAGAAGGACCGGATTGTG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGCTTGAGAAACACATTCCTGATCTCCATGTGTTGATTTCGACCCCTTTTCATCCTGCCTATGTCACGGCTGAAAGGATCAAGAAGGCAAAAAATCTACAACTACTGCTGACAGCTGGAATTGGATCAGATCATGTTGATCTGAAAGCTGCTGCTGCTGCTGGATTGACAGTAGCAGAGGTCACTGGAAGCAATACTGTCTCAGTTGCGGAAGATGAACTGATGCGAATCTTAATTCTTGTCCGAAATTTCTTGCCTGGACATCATCAGGTTATCAATGGGGAGTGGAATGTTGCTGCAATTGCGCACAGAGCTTATGATTTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0236E02-u8qcS/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E249551" ref_strand="+" ref_description="SGN-E249551 [cLEF-56-F8]">
      <seq>ttattcttctctctgtttttagtaagtacgaaacccttttctgtaaatccaaaaaaaattccgatggcgatgaggcgtgtagcttctacagcagctcgtgctattgcttcaccttcatccttagtttttaccagagaacttcaggcttcccctggccccaaaaagattgtgggtgttttctacaaagcaaatgaatatgctgaaatgaaccccaactttttgggctgtgcagaaaatgccttggggatacgtgaatggttagagtctaaaggtcatcagtacatagtcactcctgacaaagaaggaccagattgtgagcttgagaaacacattcctgatctccatgtgttgatttcgaccccttttcatcctgcctatgtcacggctgaaaggatcaagaaggcaaaaaatctacaacttctgctgacagctggaattggatcagatcatgttgatctgaaagctgctgctgctgctggattgacagtagcagaggtcactggaagcaatactgtctcagttgcggaagatgaactgatgcgaatcttaattcttgtccgaaatttcttacctggacatcatcaggttatcaatggggagtggaatgttgctgcaattgcgcacagagcttatgatttg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0236E02-u8qcS/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0236E02.1" temp_strand="+" temp_description="C02HBa0236E02.1  AC215430.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0236E02 sequenced_by:kribb upload_account_name:korea">
        <position start="65246" stop="68387"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="65546" g_stop="65689" g_length="144"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="144" r_length="144" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="65690" i_stop="66849" i_length="1160">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="66850" g_stop="67021" g_length="172"/>
          <reference_exon_boundary r_type="cDNA" r_start="145" r_stop="316" r_length="172" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="67022" i_stop="67764" i_length="743">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="0.987" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="67765" g_stop="68087" g_length="323"/>
          <reference_exon_boundary r_type="cDNA" r_start="317" r_stop="639" r_length="323" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0236E02.1" gen_strand="+" ref_id="SGN-E249551" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>639</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0236E02.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E249551" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="65546" e_stop="65689"/>
          <exon e_start="66850" e_stop="67021"/>
          <exon e_start="67765" e_stop="68087"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTATTCTTCTCTCTGTTTTTAGTAAGTACGAAACCCTTTTCTGTAAATCCAAAAAAAATTCCGATGGCGATGAGGCGTGTAGCTTCTACAGCAGCTCGTGCTATTGCTTCACCTTCATCCTTAGTTTTTACCAGAGAACTTCAGGTAACTAGCCATTTCTCCTCAATAGCCACTTTTTGTTGCTTTTGTTTTATATGACCTAGTTTTCGCCCTTTGATGAATTATCGGAAACCGGCACGGATCAACTCCGATTTTTCGAGAATCAAGTGAGTTGGAGATTGGAACAGAGGAAACTAAAGGAATTTAACCGTGTAAAGGAAAAAATTAAACACACTGTATTTGGTGCTCTACCCCTCGTCTCTTCTTTTTGGCTTTCCCCGTACTCTACACACCAAATGAAATGGCTCGGATATGAAAGGACTAATAACTTTTCAGTTTTCATTACTGCGTCCTTTTTTAAGCTTTCAGTTTTAATTTGCGTGAATATACCTAATTTTTATTAGGGTAGAGTTATATGTTTCAAATTAAATTGCTACCAAGTTAAATTTAAGAATGTTACATAAATTTAGAGACGGCAAGTTTATATACCAAGAAGGGTACTCCTTCATCCACAGAGAAACGGTGTCCAGTTCGAGTATGGGCGTGAATCTAGATATAGTTAATTCCAATGCAGATATCAGACATCGAGTGAGGAAAAAAAAGATTTTATTAATTTGTTATTTTTAGGTTGCTTTTCCTTTAACTGAAAATCTAACCCGGCAGGACCACAACAGTTCTTTTCCGATCATTACTAATGATACTTGATTTTCACGTGCGATTTCTGATATTTTTATACGGAGTAGGTGAAGAGTGAAATGTTTCACGGGTCTCAAGGACAATGGCAGCAGTGCTTCATTTTTTTTTGCATCTTCACGTGCTATATTATTACTTTGTTTATACTAGTTCGACTTGGAAAATCTTTTCATATTCAGTTGTCTGGGGAATAAATAAGATATTTCTTATTTTTTGATTAAAAAAAGAAGAAGATATTTCTTATTTAAAGAAGTGACAAATTGTACTAACTCATTTACCATGCCTAATATATTATATGTGACAATGATGATTTTTTTTAACTATTAATTGTTAGTTTGGACAAAAATGATCAAAGCAAGTATATTGAATAATGCTTATTTCTTGCCAACTGGTGCATCTACGAGATTATAGGAGTTGGATTATAATTTTAGCACATCCAGCATGCTTATATGACCTTAAAATATTCATGTATATTCTGTCCACTCACCTTTTATTTCTTCATTATTTTACAGGCTTCCCCTGGCCCCAAAAAGATTGTGGGTGTTTTCTACAAAGCAAATGAATATGCTGAAATGAACCCCAACTTTTTGGGCTGTGCAGAAAATGCCTTGGGGATACGTGAATGGTTAGAGTCTAAAGGTCATCAGTACATAGTCACTCCTGACAAAGAAGGACCAGATTGTGGTTAGTTCCTGCTAATCTATAATCTCTCATGTTCTATCCATTATCCCACTGAAGCCTATGCATTTCTAAAGATAATTTCTTTACCCTTCATGCTTGTACAACTAAACACATCTTAAAAGGAGTATTTTTGCATTTAAAACATGCATATATGTGCTGAAGTTTTTTAAAAATATATGGCTCACGTGAGGAGAATATAACGGTCATAGCAGGAACATTTATTTAGATAAAGAGCAAAGCAAAGTAAACAATATTTGCTTTGTTAGTGTTGGTCCTTTGCTGCTAGTGAATTATGATCAGGACATTGTGAGGTAGTTTCTTGCAGGAGGGAAAAAAAGAGTGTATTTTACCTTGATATACAGGTGTGCATTTGCAAAACGTCTATACTTCAGGACTCAGGTGTAAGTTGTACTAGTTTGATAAGACTATGGCTAAATTTTGTAATTTAAACAAGGATTTATCAAAGTCGCAGGGGCTTGTTTAGTTGTTGAGTAGAGTGCACACATGGATGCTTTAGTGATTTTCTGATGGATGACATGCTTAGTGTAAATCCTTGCTTATTAGTATCTTTTATCATGAGAAAGAATGGTGCCCTAGTCTGACACACAAACTACTCTGTGTCTTAGTTTTTCACTGTTGAATCCTTTACTATGCTCTATGCAAAGAAATTTCTCCTGAGCTAAAGTTTTTGAGTGTGTCCATCTATAATAGCTTCTTTTTTTTTTCCCATGACTTTCTCTCTGCAGAGCTTGAGAAACACATTCCTGATCTCCATGTGTTGATTTCGACCCCTTTTCATCCTGCCTATGTCACGGCTGAAAGGATCAAGAAGGCAAAAAATCTACAACTTCTGCTGACAGCTGGAATTGGATCAGATCATGTTGATCTGAAAGCTGCTGCTGCTGCTGGATTGACAGTAGCAGAGGTCACTGGAAGCAATACTGTCTCAGTTGCGGAAGATGAACTGATGCGAATCTTAATTCTTGTCCGAAATTTCTTACCTGGACATCATCAGGTTATCAATGGGGAGTGGAATGTTGCTGCAATTGCGCACAGAGCTTATGATTTG</genome_strand>
        <mrna_strand>TTATTCTTCTCTCTGTTTTTAGTAAGTACGAAACCCTTTTCTGTAAATCCAAAAAAAATTCCGATGGCGATGAGGCGTGTAGCTTCTACAGCAGCTCGTGCTATTGCTTCACCTTCATCCTTAGTTTTTACCAGAGAACTTCAG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCTTCCCCTGGCCCCAAAAAGATTGTGGGTGTTTTCTACAAAGCAAATGAATATGCTGAAATGAACCCCAACTTTTTGGGCTGTGCAGAAAATGCCTTGGGGATACGTGAATGGTTAGAGTCTAAAGGTCATCAGTACATAGTCACTCCTGACAAAGAAGGACCAGATTGTG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGCTTGAGAAACACATTCCTGATCTCCATGTGTTGATTTCGACCCCTTTTCATCCTGCCTATGTCACGGCTGAAAGGATCAAGAAGGCAAAAAATCTACAACTTCTGCTGACAGCTGGAATTGGATCAGATCATGTTGATCTGAAAGCTGCTGCTGCTGCTGGATTGACAGTAGCAGAGGTCACTGGAAGCAATACTGTCTCAGTTGCGGAAGATGAACTGATGCGAATCTTAATTCTTGTCCGAAATTTCTTACCTGGACATCATCAGGTTATCAATGGGGAGTGGAATGTTGCTGCAATTGCGCACAGAGCTTATGATTTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0236E02-u8qcS/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E248368" ref_strand="+" ref_description="SGN-E248368 [cLEG-1-G9]">
      <seq>ttattcttctctctgtttttagtaagtacgaaacccttttctgtaaatccaaaaaaaattccgatggcgatgaggcgtgtagcttctacagcagctcgtgctattgcttcaccttcatccttagtttttaccagagaacttcaggcttcccctggccccaaaaagattgtgggtgttttctacaaagcaaatgaatatgctgaaatgaaccccaactttttgggctgtgcagaaaatgccttggggatacgtgaatggttagagtctaaaggtcatcagtacatagtcactcctgacaaagaaggaccagattgtgagcttgagaaacacattcctgatctccatgtgttgatttcgaccccttttcatcctgcctatgtcacggctgaaaggatcaagaaggcaaaaaatctacaacttctgctgacagctggaattggatcagatcatgttgatctgaaagctgctgctgctgctggattgacagtagcagaggtcactggaagcaatactgtctcagttgcggaagatgaactgatgcgaatcttaattcttgtccgaaatttcttacctggacatcatcaggttatcaatggggagtggaatgttgctgcaattgcgcacagagcttatgat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0236E02-u8qcS/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0236E02.1" temp_strand="+" temp_description="C02HBa0236E02.1  AC215430.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0236E02 sequenced_by:kribb upload_account_name:korea">
        <position start="65246" stop="68384"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="65546" g_stop="65689" g_length="144"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="144" r_length="144" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="65690" i_stop="66849" i_length="1160">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="66850" g_stop="67021" g_length="172"/>
          <reference_exon_boundary r_type="cDNA" r_start="145" r_stop="316" r_length="172" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="67022" i_stop="67764" i_length="743">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="0.987" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="67765" g_stop="68084" g_length="320"/>
          <reference_exon_boundary r_type="cDNA" r_start="317" r_stop="636" r_length="320" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0236E02.1" gen_strand="+" ref_id="SGN-E248368" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>636</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0236E02.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E248368" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="65546" e_stop="65689"/>
          <exon e_start="66850" e_stop="67021"/>
          <exon e_start="67765" e_stop="68084"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTATTCTTCTCTCTGTTTTTAGTAAGTACGAAACCCTTTTCTGTAAATCCAAAAAAAATTCCGATGGCGATGAGGCGTGTAGCTTCTACAGCAGCTCGTGCTATTGCTTCACCTTCATCCTTAGTTTTTACCAGAGAACTTCAGGTAACTAGCCATTTCTCCTCAATAGCCACTTTTTGTTGCTTTTGTTTTATATGACCTAGTTTTCGCCCTTTGATGAATTATCGGAAACCGGCACGGATCAACTCCGATTTTTCGAGAATCAAGTGAGTTGGAGATTGGAACAGAGGAAACTAAAGGAATTTAACCGTGTAAAGGAAAAAATTAAACACACTGTATTTGGTGCTCTACCCCTCGTCTCTTCTTTTTGGCTTTCCCCGTACTCTACACACCAAATGAAATGGCTCGGATATGAAAGGACTAATAACTTTTCAGTTTTCATTACTGCGTCCTTTTTTAAGCTTTCAGTTTTAATTTGCGTGAATATACCTAATTTTTATTAGGGTAGAGTTATATGTTTCAAATTAAATTGCTACCAAGTTAAATTTAAGAATGTTACATAAATTTAGAGACGGCAAGTTTATATACCAAGAAGGGTACTCCTTCATCCACAGAGAAACGGTGTCCAGTTCGAGTATGGGCGTGAATCTAGATATAGTTAATTCCAATGCAGATATCAGACATCGAGTGAGGAAAAAAAAGATTTTATTAATTTGTTATTTTTAGGTTGCTTTTCCTTTAACTGAAAATCTAACCCGGCAGGACCACAACAGTTCTTTTCCGATCATTACTAATGATACTTGATTTTCACGTGCGATTTCTGATATTTTTATACGGAGTAGGTGAAGAGTGAAATGTTTCACGGGTCTCAAGGACAATGGCAGCAGTGCTTCATTTTTTTTTGCATCTTCACGTGCTATATTATTACTTTGTTTATACTAGTTCGACTTGGAAAATCTTTTCATATTCAGTTGTCTGGGGAATAAATAAGATATTTCTTATTTTTTGATTAAAAAAAGAAGAAGATATTTCTTATTTAAAGAAGTGACAAATTGTACTAACTCATTTACCATGCCTAATATATTATATGTGACAATGATGATTTTTTTTAACTATTAATTGTTAGTTTGGACAAAAATGATCAAAGCAAGTATATTGAATAATGCTTATTTCTTGCCAACTGGTGCATCTACGAGATTATAGGAGTTGGATTATAATTTTAGCACATCCAGCATGCTTATATGACCTTAAAATATTCATGTATATTCTGTCCACTCACCTTTTATTTCTTCATTATTTTACAGGCTTCCCCTGGCCCCAAAAAGATTGTGGGTGTTTTCTACAAAGCAAATGAATATGCTGAAATGAACCCCAACTTTTTGGGCTGTGCAGAAAATGCCTTGGGGATACGTGAATGGTTAGAGTCTAAAGGTCATCAGTACATAGTCACTCCTGACAAAGAAGGACCAGATTGTGGTTAGTTCCTGCTAATCTATAATCTCTCATGTTCTATCCATTATCCCACTGAAGCCTATGCATTTCTAAAGATAATTTCTTTACCCTTCATGCTTGTACAACTAAACACATCTTAAAAGGAGTATTTTTGCATTTAAAACATGCATATATGTGCTGAAGTTTTTTAAAAATATATGGCTCACGTGAGGAGAATATAACGGTCATAGCAGGAACATTTATTTAGATAAAGAGCAAAGCAAAGTAAACAATATTTGCTTTGTTAGTGTTGGTCCTTTGCTGCTAGTGAATTATGATCAGGACATTGTGAGGTAGTTTCTTGCAGGAGGGAAAAAAAGAGTGTATTTTACCTTGATATACAGGTGTGCATTTGCAAAACGTCTATACTTCAGGACTCAGGTGTAAGTTGTACTAGTTTGATAAGACTATGGCTAAATTTTGTAATTTAAACAAGGATTTATCAAAGTCGCAGGGGCTTGTTTAGTTGTTGAGTAGAGTGCACACATGGATGCTTTAGTGATTTTCTGATGGATGACATGCTTAGTGTAAATCCTTGCTTATTAGTATCTTTTATCATGAGAAAGAATGGTGCCCTAGTCTGACACACAAACTACTCTGTGTCTTAGTTTTTCACTGTTGAATCCTTTACTATGCTCTATGCAAAGAAATTTCTCCTGAGCTAAAGTTTTTGAGTGTGTCCATCTATAATAGCTTCTTTTTTTTTTCCCATGACTTTCTCTCTGCAGAGCTTGAGAAACACATTCCTGATCTCCATGTGTTGATTTCGACCCCTTTTCATCCTGCCTATGTCACGGCTGAAAGGATCAAGAAGGCAAAAAATCTACAACTTCTGCTGACAGCTGGAATTGGATCAGATCATGTTGATCTGAAAGCTGCTGCTGCTGCTGGATTGACAGTAGCAGAGGTCACTGGAAGCAATACTGTCTCAGTTGCGGAAGATGAACTGATGCGAATCTTAATTCTTGTCCGAAATTTCTTACCTGGACATCATCAGGTTATCAATGGGGAGTGGAATGTTGCTGCAATTGCGCACAGAGCTTATGAT</genome_strand>
        <mrna_strand>TTATTCTTCTCTCTGTTTTTAGTAAGTACGAAACCCTTTTCTGTAAATCCAAAAAAAATTCCGATGGCGATGAGGCGTGTAGCTTCTACAGCAGCTCGTGCTATTGCTTCACCTTCATCCTTAGTTTTTACCAGAGAACTTCAG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCTTCCCCTGGCCCCAAAAAGATTGTGGGTGTTTTCTACAAAGCAAATGAATATGCTGAAATGAACCCCAACTTTTTGGGCTGTGCAGAAAATGCCTTGGGGATACGTGAATGGTTAGAGTCTAAAGGTCATCAGTACATAGTCACTCCTGACAAAGAAGGACCAGATTGTG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGCTTGAGAAACACATTCCTGATCTCCATGTGTTGATTTCGACCCCTTTTCATCCTGCCTATGTCACGGCTGAAAGGATCAAGAAGGCAAAAAATCTACAACTTCTGCTGACAGCTGGAATTGGATCAGATCATGTTGATCTGAAAGCTGCTGCTGCTGCTGGATTGACAGTAGCAGAGGTCACTGGAAGCAATACTGTCTCAGTTGCGGAAGATGAACTGATGCGAATCTTAATTCTTGTCCGAAATTTCTTACCTGGACATCATCAGGTTATCAATGGGGAGTGGAATGTTGCTGCAATTGCGCACAGAGCTTATGAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0236E02-u8qcS/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E448999" ref_strand="+" ref_description="SGN-E448999 [cSTS-5-G1]">
      <seq>gtattcttctctctgtttttaccaagtacaaaaccctttgctgtaaatccaaaaaattccgatggcgatgagtcgtgtagcttctacagcagctcgtgctattacttcaccttcatccttagtttttaccagagaacttcaggcttcccctggccccaaaaagattgtgggtgttttctacaaagcaaatgaatatgctgaaatgaaccccaactttttgggctgtgcagaaaatgccttggggatacgtgaatggttagaatctaaaggtcatcagtacatagtcactcctgacaaagaaggaccagattgtgagcttgagaaacacattcctgatctccatgtgttgatttcgaccccttttcatcctgcctatgtcacggctgaaaggatcaagaaggcaaaaaatctacaactactgctgacagctggaattggatcagatcatgttgatctgaaagctgctgctgctgctggattgacagtagcagaggtcactggaagcaatactgtctcagttgcggaagatgaactgatgcgaatcttaattcttgtccgaaatttcttgcctggacatcatcaggttatcaatggggagtggaatgttgctgcaatt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0236E02-u8qcS/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0236E02.1" temp_strand="+" temp_description="C02HBa0236E02.1  AC215430.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0236E02 sequenced_by:kribb upload_account_name:korea">
        <position start="65247" stop="68366"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="65546" g_stop="65689" g_length="144"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="142" r_length="142" r_score="0.938"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="65690" i_stop="66849" i_length="1160">
            <donor d_prob="1.000" d_score="0.98"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="66850" g_stop="67021" g_length="172"/>
          <reference_exon_boundary r_type="cDNA" r_start="143" r_stop="314" r_length="172" r_score="0.994"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="67022" i_stop="67764" i_length="743">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="0.987" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="67765" g_stop="68066" g_length="302"/>
          <reference_exon_boundary r_type="cDNA" r_start="315" r_stop="616" r_length="302" r_score="0.993"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0236E02.1" gen_strand="+" ref_id="SGN-E448999" ref_strand="+">
        <total_alignment_score>0.981</total_alignment_score>
        <cumulative_length_of_scored_exons>618</cumulative_length_of_scored_exons>
        <coverage percentage="1.003" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0236E02.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E448999" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="65546" e_stop="65689"/>
          <exon e_start="66850" e_stop="67021"/>
          <exon e_start="67765" e_stop="68066"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTATTCTTCTCTCTGTTTTTAGTAAGTACGAAACCCTTTTCTGTAAATCCAAAAAAAATTCCGATGGCGATGAGGCGTGTAGCTTCTACAGCAGCTCGTGCTATTGCTTCACCTTCATCCTTAGTTTTTACCAGAGAACTTCAGGTAACTAGCCATTTCTCCTCAATAGCCACTTTTTGTTGCTTTTGTTTTATATGACCTAGTTTTCGCCCTTTGATGAATTATCGGAAACCGGCACGGATCAACTCCGATTTTTCGAGAATCAAGTGAGTTGGAGATTGGAACAGAGGAAACTAAAGGAATTTAACCGTGTAAAGGAAAAAATTAAACACACTGTATTTGGTGCTCTACCCCTCGTCTCTTCTTTTTGGCTTTCCCCGTACTCTACACACCAAATGAAATGGCTCGGATATGAAAGGACTAATAACTTTTCAGTTTTCATTACTGCGTCCTTTTTTAAGCTTTCAGTTTTAATTTGCGTGAATATACCTAATTTTTATTAGGGTAGAGTTATATGTTTCAAATTAAATTGCTACCAAGTTAAATTTAAGAATGTTACATAAATTTAGAGACGGCAAGTTTATATACCAAGAAGGGTACTCCTTCATCCACAGAGAAACGGTGTCCAGTTCGAGTATGGGCGTGAATCTAGATATAGTTAATTCCAATGCAGATATCAGACATCGAGTGAGGAAAAAAAAGATTTTATTAATTTGTTATTTTTAGGTTGCTTTTCCTTTAACTGAAAATCTAACCCGGCAGGACCACAACAGTTCTTTTCCGATCATTACTAATGATACTTGATTTTCACGTGCGATTTCTGATATTTTTATACGGAGTAGGTGAAGAGTGAAATGTTTCACGGGTCTCAAGGACAATGGCAGCAGTGCTTCATTTTTTTTTGCATCTTCACGTGCTATATTATTACTTTGTTTATACTAGTTCGACTTGGAAAATCTTTTCATATTCAGTTGTCTGGGGAATAAATAAGATATTTCTTATTTTTTGATTAAAAAAAGAAGAAGATATTTCTTATTTAAAGAAGTGACAAATTGTACTAACTCATTTACCATGCCTAATATATTATATGTGACAATGATGATTTTTTTTAACTATTAATTGTTAGTTTGGACAAAAATGATCAAAGCAAGTATATTGAATAATGCTTATTTCTTGCCAACTGGTGCATCTACGAGATTATAGGAGTTGGATTATAATTTTAGCACATCCAGCATGCTTATATGACCTTAAAATATTCATGTATATTCTGTCCACTCACCTTTTATTTCTTCATTATTTTACAGGCTTCCCCTGGCCCCAAAAAGATTGTGGGTGTTTTCTACAAAGCAAATGAATATGCTGAAATGAACCCCAACTTTTTGGGCTGTGCAGAAAATGCCTTGGGGATACGTGAATGGTTAGAGTCTAAAGGTCATCAGTACATAGTCACTCCTGACAAAGAAGGACCAGATTGTGGTTAGTTCCTGCTAATCTATAATCTCTCATGTTCTATCCATTATCCCACTGAAGCCTATGCATTTCTAAAGATAATTTCTTTACCCTTCATGCTTGTACAACTAAACACATCTTAAAAGGAGTATTTTTGCATTTAAAACATGCATATATGTGCTGAAGTTTTTTAAAAATATATGGCTCACGTGAGGAGAATATAACGGTCATAGCAGGAACATTTATTTAGATAAAGAGCAAAGCAAAGTAAACAATATTTGCTTTGTTAGTGTTGGTCCTTTGCTGCTAGTGAATTATGATCAGGACATTGTGAGGTAGTTTCTTGCAGGAGGGAAAAAAAGAGTGTATTTTACCTTGATATACAGGTGTGCATTTGCAAAACGTCTATACTTCAGGACTCAGGTGTAAGTTGTACTAGTTTGATAAGACTATGGCTAAATTTTGTAATTTAAACAAGGATTTATCAAAGTCGCAGGGGCTTGTTTAGTTGTTGAGTAGAGTGCACACATGGATGCTTTAGTGATTTTCTGATGGATGACATGCTTAGTGTAAATCCTTGCTTATTAGTATCTTTTATCATGAGAAAGAATGGTGCCCTAGTCTGACACACAAACTACTCTGTGTCTTAGTTTTTCACTGTTGAATCCTTTACTATGCTCTATGCAAAGAAATTTCTCCTGAGCTAAAGTTTTTGAGTGTGTCCATCTATAATAGCTTCTTTTTTTTTTCCCATGACTTTCTCTCTGCAGAGCTTGAGAAACACATTCCTGATCTCCATGTGTTGATTTCGACCCCTTTTCATCCTGCCTATGTCACGGCTGAAAGGATCAAGAAGGCAAAAAATCTACAACTTCTGCTGACAGCTGGAATTGGATCAGATCATGTTGATCTGAAAGCTGCTGCTGCTGCTGGATTGACAGTAGCAGAGGTCACTGGAAGCAATACTGTCTCAGTTGCGGAAGATGAACTGATGCGAATCTTAATTCTTGTCCGAAATTTCTTACCTGGACATCATCAGGTTATCAATGGGGAGTGGAATGTTGCTGCAATT</genome_strand>
        <mrna_strand>GTATTCTTCTCTCTGTTTTTACCAAGTACAAAACCCTTTGCTGTAAATCC--AAAAAATTCCGATGGCGATGAGTCGTGTAGCTTCTACAGCAGCTCGTGCTATTACTTCACCTTCATCCTTAGTTTTTACCAGAGAACTTCAG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCTTCCCCTGGCCCCAAAAAGATTGTGGGTGTTTTCTACAAAGCAAATGAATATGCTGAAATGAACCCCAACTTTTTGGGCTGTGCAGAAAATGCCTTGGGGATACGTGAATGGTTAGAATCTAAAGGTCATCAGTACATAGTCACTCCTGACAAAGAAGGACCAGATTGTG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGCTTGAGAAACACATTCCTGATCTCCATGTGTTGATTTCGACCCCTTTTCATCCTGCCTATGTCACGGCTGAAAGGATCAAGAAGGCAAAAAATCTACAACTACTGCTGACAGCTGGAATTGGATCAGATCATGTTGATCTGAAAGCTGCTGCTGCTGCTGGATTGACAGTAGCAGAGGTCACTGGAAGCAATACTGTCTCAGTTGCGGAAGATGAACTGATGCGAATCTTAATTCTTGTCCGAAATTTCTTGCCTGGACATCATCAGGTTATCAATGGGGAGTGGAATGTTGCTGCAATT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0236E02-u8qcS/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E212414" ref_strand="+" ref_description="SGN-E212414 [cLEC-74-L5]">
      <seq>ttattcttctctctgtttttagtaagtacgaaacccttttctgtaaatccaaaaaaaattccgatggcgatgaggcgtgtagcttctacagcagctcgtgctattgcttcaccttcatccttagtttttaccagagaacttcaggcttcccctggccccaaaaagattgtgggtgttttctacaaagcaaatgaatatgctgaaatgaaccccaactttttgggctgtgcagaaaatgccttggggatacgtgaatggttagagtctaaaggtcatcagtacatagtcactcctgacaaagaaggaccagattgtgagcttgagaaacacattcctgatctccatgtgttgatttcgaccccttttcatcctgcctatgtcacggctgaaaggatcaagaaggcaaaaaatctacaacttctgctgacagctggaattggatcagatcatgttgatctgaaagctgctgctgctgctggattgacagtagcagaggtcactggaagcaatactgtctcagttgcggaagatgaactgatgcgaatcttaattcttgtccgaaatttcttacctggacatcatcaggttatcaat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0236E02-u8qcS/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0236E02.1" temp_strand="+" temp_description="C02HBa0236E02.1  AC215430.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0236E02 sequenced_by:kribb upload_account_name:korea">
        <position start="65246" stop="68342"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="65546" g_stop="65689" g_length="144"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="144" r_length="144" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="65690" i_stop="66849" i_length="1160">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="66850" g_stop="67021" g_length="172"/>
          <reference_exon_boundary r_type="cDNA" r_start="145" r_stop="316" r_length="172" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="67022" i_stop="67764" i_length="743">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="0.987" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="67765" g_stop="68042" g_length="278"/>
          <reference_exon_boundary r_type="cDNA" r_start="317" r_stop="594" r_length="278" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0236E02.1" gen_strand="+" ref_id="SGN-E212414" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>594</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0236E02.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E212414" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="65546" e_stop="65689"/>
          <exon e_start="66850" e_stop="67021"/>
          <exon e_start="67765" e_stop="68042"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTATTCTTCTCTCTGTTTTTAGTAAGTACGAAACCCTTTTCTGTAAATCCAAAAAAAATTCCGATGGCGATGAGGCGTGTAGCTTCTACAGCAGCTCGTGCTATTGCTTCACCTTCATCCTTAGTTTTTACCAGAGAACTTCAGGTAACTAGCCATTTCTCCTCAATAGCCACTTTTTGTTGCTTTTGTTTTATATGACCTAGTTTTCGCCCTTTGATGAATTATCGGAAACCGGCACGGATCAACTCCGATTTTTCGAGAATCAAGTGAGTTGGAGATTGGAACAGAGGAAACTAAAGGAATTTAACCGTGTAAAGGAAAAAATTAAACACACTGTATTTGGTGCTCTACCCCTCGTCTCTTCTTTTTGGCTTTCCCCGTACTCTACACACCAAATGAAATGGCTCGGATATGAAAGGACTAATAACTTTTCAGTTTTCATTACTGCGTCCTTTTTTAAGCTTTCAGTTTTAATTTGCGTGAATATACCTAATTTTTATTAGGGTAGAGTTATATGTTTCAAATTAAATTGCTACCAAGTTAAATTTAAGAATGTTACATAAATTTAGAGACGGCAAGTTTATATACCAAGAAGGGTACTCCTTCATCCACAGAGAAACGGTGTCCAGTTCGAGTATGGGCGTGAATCTAGATATAGTTAATTCCAATGCAGATATCAGACATCGAGTGAGGAAAAAAAAGATTTTATTAATTTGTTATTTTTAGGTTGCTTTTCCTTTAACTGAAAATCTAACCCGGCAGGACCACAACAGTTCTTTTCCGATCATTACTAATGATACTTGATTTTCACGTGCGATTTCTGATATTTTTATACGGAGTAGGTGAAGAGTGAAATGTTTCACGGGTCTCAAGGACAATGGCAGCAGTGCTTCATTTTTTTTTGCATCTTCACGTGCTATATTATTACTTTGTTTATACTAGTTCGACTTGGAAAATCTTTTCATATTCAGTTGTCTGGGGAATAAATAAGATATTTCTTATTTTTTGATTAAAAAAAGAAGAAGATATTTCTTATTTAAAGAAGTGACAAATTGTACTAACTCATTTACCATGCCTAATATATTATATGTGACAATGATGATTTTTTTTAACTATTAATTGTTAGTTTGGACAAAAATGATCAAAGCAAGTATATTGAATAATGCTTATTTCTTGCCAACTGGTGCATCTACGAGATTATAGGAGTTGGATTATAATTTTAGCACATCCAGCATGCTTATATGACCTTAAAATATTCATGTATATTCTGTCCACTCACCTTTTATTTCTTCATTATTTTACAGGCTTCCCCTGGCCCCAAAAAGATTGTGGGTGTTTTCTACAAAGCAAATGAATATGCTGAAATGAACCCCAACTTTTTGGGCTGTGCAGAAAATGCCTTGGGGATACGTGAATGGTTAGAGTCTAAAGGTCATCAGTACATAGTCACTCCTGACAAAGAAGGACCAGATTGTGGTTAGTTCCTGCTAATCTATAATCTCTCATGTTCTATCCATTATCCCACTGAAGCCTATGCATTTCTAAAGATAATTTCTTTACCCTTCATGCTTGTACAACTAAACACATCTTAAAAGGAGTATTTTTGCATTTAAAACATGCATATATGTGCTGAAGTTTTTTAAAAATATATGGCTCACGTGAGGAGAATATAACGGTCATAGCAGGAACATTTATTTAGATAAAGAGCAAAGCAAAGTAAACAATATTTGCTTTGTTAGTGTTGGTCCTTTGCTGCTAGTGAATTATGATCAGGACATTGTGAGGTAGTTTCTTGCAGGAGGGAAAAAAAGAGTGTATTTTACCTTGATATACAGGTGTGCATTTGCAAAACGTCTATACTTCAGGACTCAGGTGTAAGTTGTACTAGTTTGATAAGACTATGGCTAAATTTTGTAATTTAAACAAGGATTTATCAAAGTCGCAGGGGCTTGTTTAGTTGTTGAGTAGAGTGCACACATGGATGCTTTAGTGATTTTCTGATGGATGACATGCTTAGTGTAAATCCTTGCTTATTAGTATCTTTTATCATGAGAAAGAATGGTGCCCTAGTCTGACACACAAACTACTCTGTGTCTTAGTTTTTCACTGTTGAATCCTTTACTATGCTCTATGCAAAGAAATTTCTCCTGAGCTAAAGTTTTTGAGTGTGTCCATCTATAATAGCTTCTTTTTTTTTTCCCATGACTTTCTCTCTGCAGAGCTTGAGAAACACATTCCTGATCTCCATGTGTTGATTTCGACCCCTTTTCATCCTGCCTATGTCACGGCTGAAAGGATCAAGAAGGCAAAAAATCTACAACTTCTGCTGACAGCTGGAATTGGATCAGATCATGTTGATCTGAAAGCTGCTGCTGCTGCTGGATTGACAGTAGCAGAGGTCACTGGAAGCAATACTGTCTCAGTTGCGGAAGATGAACTGATGCGAATCTTAATTCTTGTCCGAAATTTCTTACCTGGACATCATCAGGTTATCAAT</genome_strand>
        <mrna_strand>TTATTCTTCTCTCTGTTTTTAGTAAGTACGAAACCCTTTTCTGTAAATCCAAAAAAAATTCCGATGGCGATGAGGCGTGTAGCTTCTACAGCAGCTCGTGCTATTGCTTCACCTTCATCCTTAGTTTTTACCAGAGAACTTCAG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCTTCCCCTGGCCCCAAAAAGATTGTGGGTGTTTTCTACAAAGCAAATGAATATGCTGAAATGAACCCCAACTTTTTGGGCTGTGCAGAAAATGCCTTGGGGATACGTGAATGGTTAGAGTCTAAAGGTCATCAGTACATAGTCACTCCTGACAAAGAAGGACCAGATTGTG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGCTTGAGAAACACATTCCTGATCTCCATGTGTTGATTTCGACCCCTTTTCATCCTGCCTATGTCACGGCTGAAAGGATCAAGAAGGCAAAAAATCTACAACTTCTGCTGACAGCTGGAATTGGATCAGATCATGTTGATCTGAAAGCTGCTGCTGCTGCTGGATTGACAGTAGCAGAGGTCACTGGAAGCAATACTGTCTCAGTTGCGGAAGATGAACTGATGCGAATCTTAATTCTTGTCCGAAATTTCTTACCTGGACATCATCAGGTTATCAAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0236E02-u8qcS/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E205437" ref_strand="+" ref_description="SGN-E205437 [cLEC-28-N15]">
      <seq>ttattcttctctctgtttttagtaagtacgaaacccttttctgtaaatccaaaaaaaattccgatggcgatgaggcgtgtagcttctacagcagctcgtgctattgcttcaccttcatccttagtttttaccagagaacttcaggcttcccctggccccaaaaagattgtgggtgttttctacaaagcaaatgaatatgctgaaatgaaccccaactttttgggctgtgcagaaaatgccttggggatacgtgaatggttagagtctaaaggtcatcagtacatagtcactcctgacaaagaaggaccagattgtgagcttgagaaacacattcctgatctccatgtgttgatttcgaccccttttcatcctgcctatgtcacggctgaaaggatcaagaaggcaaaaaatctacaacttctgctgacagctggaattggatcagatcatgttgatctgaaagctgctgctgctgctggattgacagtagcagaggtcactggaagcaatactgtctcagttgcggaagatgaactgatgcgaatcttaattcttgtccgaaatttc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0236E02-u8qcS/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0236E02.1" temp_strand="+" temp_description="C02HBa0236E02.1  AC215430.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0236E02 sequenced_by:kribb upload_account_name:korea">
        <position start="65246" stop="68315"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="65546" g_stop="65689" g_length="144"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="144" r_length="144" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="65690" i_stop="66849" i_length="1160">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="66850" g_stop="67021" g_length="172"/>
          <reference_exon_boundary r_type="cDNA" r_start="145" r_stop="316" r_length="172" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="67022" i_stop="67764" i_length="743">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="0.987" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="67765" g_stop="68015" g_length="251"/>
          <reference_exon_boundary r_type="cDNA" r_start="317" r_stop="567" r_length="251" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0236E02.1" gen_strand="+" ref_id="SGN-E205437" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>567</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0236E02.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E205437" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="65546" e_stop="65689"/>
          <exon e_start="66850" e_stop="67021"/>
          <exon e_start="67765" e_stop="68015"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTATTCTTCTCTCTGTTTTTAGTAAGTACGAAACCCTTTTCTGTAAATCCAAAAAAAATTCCGATGGCGATGAGGCGTGTAGCTTCTACAGCAGCTCGTGCTATTGCTTCACCTTCATCCTTAGTTTTTACCAGAGAACTTCAGGTAACTAGCCATTTCTCCTCAATAGCCACTTTTTGTTGCTTTTGTTTTATATGACCTAGTTTTCGCCCTTTGATGAATTATCGGAAACCGGCACGGATCAACTCCGATTTTTCGAGAATCAAGTGAGTTGGAGATTGGAACAGAGGAAACTAAAGGAATTTAACCGTGTAAAGGAAAAAATTAAACACACTGTATTTGGTGCTCTACCCCTCGTCTCTTCTTTTTGGCTTTCCCCGTACTCTACACACCAAATGAAATGGCTCGGATATGAAAGGACTAATAACTTTTCAGTTTTCATTACTGCGTCCTTTTTTAAGCTTTCAGTTTTAATTTGCGTGAATATACCTAATTTTTATTAGGGTAGAGTTATATGTTTCAAATTAAATTGCTACCAAGTTAAATTTAAGAATGTTACATAAATTTAGAGACGGCAAGTTTATATACCAAGAAGGGTACTCCTTCATCCACAGAGAAACGGTGTCCAGTTCGAGTATGGGCGTGAATCTAGATATAGTTAATTCCAATGCAGATATCAGACATCGAGTGAGGAAAAAAAAGATTTTATTAATTTGTTATTTTTAGGTTGCTTTTCCTTTAACTGAAAATCTAACCCGGCAGGACCACAACAGTTCTTTTCCGATCATTACTAATGATACTTGATTTTCACGTGCGATTTCTGATATTTTTATACGGAGTAGGTGAAGAGTGAAATGTTTCACGGGTCTCAAGGACAATGGCAGCAGTGCTTCATTTTTTTTTGCATCTTCACGTGCTATATTATTACTTTGTTTATACTAGTTCGACTTGGAAAATCTTTTCATATTCAGTTGTCTGGGGAATAAATAAGATATTTCTTATTTTTTGATTAAAAAAAGAAGAAGATATTTCTTATTTAAAGAAGTGACAAATTGTACTAACTCATTTACCATGCCTAATATATTATATGTGACAATGATGATTTTTTTTAACTATTAATTGTTAGTTTGGACAAAAATGATCAAAGCAAGTATATTGAATAATGCTTATTTCTTGCCAACTGGTGCATCTACGAGATTATAGGAGTTGGATTATAATTTTAGCACATCCAGCATGCTTATATGACCTTAAAATATTCATGTATATTCTGTCCACTCACCTTTTATTTCTTCATTATTTTACAGGCTTCCCCTGGCCCCAAAAAGATTGTGGGTGTTTTCTACAAAGCAAATGAATATGCTGAAATGAACCCCAACTTTTTGGGCTGTGCAGAAAATGCCTTGGGGATACGTGAATGGTTAGAGTCTAAAGGTCATCAGTACATAGTCACTCCTGACAAAGAAGGACCAGATTGTGGTTAGTTCCTGCTAATCTATAATCTCTCATGTTCTATCCATTATCCCACTGAAGCCTATGCATTTCTAAAGATAATTTCTTTACCCTTCATGCTTGTACAACTAAACACATCTTAAAAGGAGTATTTTTGCATTTAAAACATGCATATATGTGCTGAAGTTTTTTAAAAATATATGGCTCACGTGAGGAGAATATAACGGTCATAGCAGGAACATTTATTTAGATAAAGAGCAAAGCAAAGTAAACAATATTTGCTTTGTTAGTGTTGGTCCTTTGCTGCTAGTGAATTATGATCAGGACATTGTGAGGTAGTTTCTTGCAGGAGGGAAAAAAAGAGTGTATTTTACCTTGATATACAGGTGTGCATTTGCAAAACGTCTATACTTCAGGACTCAGGTGTAAGTTGTACTAGTTTGATAAGACTATGGCTAAATTTTGTAATTTAAACAAGGATTTATCAAAGTCGCAGGGGCTTGTTTAGTTGTTGAGTAGAGTGCACACATGGATGCTTTAGTGATTTTCTGATGGATGACATGCTTAGTGTAAATCCTTGCTTATTAGTATCTTTTATCATGAGAAAGAATGGTGCCCTAGTCTGACACACAAACTACTCTGTGTCTTAGTTTTTCACTGTTGAATCCTTTACTATGCTCTATGCAAAGAAATTTCTCCTGAGCTAAAGTTTTTGAGTGTGTCCATCTATAATAGCTTCTTTTTTTTTTCCCATGACTTTCTCTCTGCAGAGCTTGAGAAACACATTCCTGATCTCCATGTGTTGATTTCGACCCCTTTTCATCCTGCCTATGTCACGGCTGAAAGGATCAAGAAGGCAAAAAATCTACAACTTCTGCTGACAGCTGGAATTGGATCAGATCATGTTGATCTGAAAGCTGCTGCTGCTGCTGGATTGACAGTAGCAGAGGTCACTGGAAGCAATACTGTCTCAGTTGCGGAAGATGAACTGATGCGAATCTTAATTCTTGTCCGAAATTTC</genome_strand>
        <mrna_strand>TTATTCTTCTCTCTGTTTTTAGTAAGTACGAAACCCTTTTCTGTAAATCCAAAAAAAATTCCGATGGCGATGAGGCGTGTAGCTTCTACAGCAGCTCGTGCTATTGCTTCACCTTCATCCTTAGTTTTTACCAGAGAACTTCAG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCTTCCCCTGGCCCCAAAAAGATTGTGGGTGTTTTCTACAAAGCAAATGAATATGCTGAAATGAACCCCAACTTTTTGGGCTGTGCAGAAAATGCCTTGGGGATACGTGAATGGTTAGAGTCTAAAGGTCATCAGTACATAGTCACTCCTGACAAAGAAGGACCAGATTGTG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGCTTGAGAAACACATTCCTGATCTCCATGTGTTGATTTCGACCCCTTTTCATCCTGCCTATGTCACGGCTGAAAGGATCAAGAAGGCAAAAAATCTACAACTTCTGCTGACAGCTGGAATTGGATCAGATCATGTTGATCTGAAAGCTGCTGCTGCTGCTGGATTGACAGTAGCAGAGGTCACTGGAAGCAATACTGTCTCAGTTGCGGAAGATGAACTGATGCGAATCTTAATTCTTGTCCGAAATTTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0236E02-u8qcS/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E204321" ref_strand="+" ref_description="SGN-E204321 [cLEC-13-I19]">
      <seq>ttattcttctctctgtttttagtaagtacgaaacccttttctgtaaatccaaaaaaaattccgatggcgatgaggcgtgtagcttctacagcagctcgtgctattgcttcaccttcatccttagtttttaccagagaacttcaggcttcccctggccccaaaaagattgtgggtgttttctacaaagcaaatgaatatgctgaaatgaaccccaactttttgggctgtgcagaaaatgccttggggatacgtgaatggttagagtctaaaggtcatcagtacatagtcactcctgacaaagaaggaccagattgtgagcttgagaaacacattcctgatctccatgtgttgatttcgaccccttttcatcctgcctatgtcacggctgaaaggatcaagaaggctaaaaatctacaacttctgctgacagctggaattggatcagatcatgttgatctgaaagctgctgctgctgctggattgacagtagcagaggtcactggaagcaatactgtctcagttgcggaagatgaactgatgcgaatcttaattc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0236E02-u8qcS/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0236E02.1" temp_strand="+" temp_description="C02HBa0236E02.1  AC215430.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0236E02 sequenced_by:kribb upload_account_name:korea">
        <position start="65246" stop="68301"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="65546" g_stop="65689" g_length="144"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="144" r_length="144" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="65690" i_stop="66849" i_length="1160">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="66850" g_stop="67021" g_length="172"/>
          <reference_exon_boundary r_type="cDNA" r_start="145" r_stop="316" r_length="172" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="67022" i_stop="67764" i_length="743">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="0.987" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="67765" g_stop="68001" g_length="237"/>
          <reference_exon_boundary r_type="cDNA" r_start="317" r_stop="553" r_length="237" r_score="0.996"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0236E02.1" gen_strand="+" ref_id="SGN-E204321" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>553</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0236E02.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E204321" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="65546" e_stop="65689"/>
          <exon e_start="66850" e_stop="67021"/>
          <exon e_start="67765" e_stop="68001"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTATTCTTCTCTCTGTTTTTAGTAAGTACGAAACCCTTTTCTGTAAATCCAAAAAAAATTCCGATGGCGATGAGGCGTGTAGCTTCTACAGCAGCTCGTGCTATTGCTTCACCTTCATCCTTAGTTTTTACCAGAGAACTTCAGGTAACTAGCCATTTCTCCTCAATAGCCACTTTTTGTTGCTTTTGTTTTATATGACCTAGTTTTCGCCCTTTGATGAATTATCGGAAACCGGCACGGATCAACTCCGATTTTTCGAGAATCAAGTGAGTTGGAGATTGGAACAGAGGAAACTAAAGGAATTTAACCGTGTAAAGGAAAAAATTAAACACACTGTATTTGGTGCTCTACCCCTCGTCTCTTCTTTTTGGCTTTCCCCGTACTCTACACACCAAATGAAATGGCTCGGATATGAAAGGACTAATAACTTTTCAGTTTTCATTACTGCGTCCTTTTTTAAGCTTTCAGTTTTAATTTGCGTGAATATACCTAATTTTTATTAGGGTAGAGTTATATGTTTCAAATTAAATTGCTACCAAGTTAAATTTAAGAATGTTACATAAATTTAGAGACGGCAAGTTTATATACCAAGAAGGGTACTCCTTCATCCACAGAGAAACGGTGTCCAGTTCGAGTATGGGCGTGAATCTAGATATAGTTAATTCCAATGCAGATATCAGACATCGAGTGAGGAAAAAAAAGATTTTATTAATTTGTTATTTTTAGGTTGCTTTTCCTTTAACTGAAAATCTAACCCGGCAGGACCACAACAGTTCTTTTCCGATCATTACTAATGATACTTGATTTTCACGTGCGATTTCTGATATTTTTATACGGAGTAGGTGAAGAGTGAAATGTTTCACGGGTCTCAAGGACAATGGCAGCAGTGCTTCATTTTTTTTTGCATCTTCACGTGCTATATTATTACTTTGTTTATACTAGTTCGACTTGGAAAATCTTTTCATATTCAGTTGTCTGGGGAATAAATAAGATATTTCTTATTTTTTGATTAAAAAAAGAAGAAGATATTTCTTATTTAAAGAAGTGACAAATTGTACTAACTCATTTACCATGCCTAATATATTATATGTGACAATGATGATTTTTTTTAACTATTAATTGTTAGTTTGGACAAAAATGATCAAAGCAAGTATATTGAATAATGCTTATTTCTTGCCAACTGGTGCATCTACGAGATTATAGGAGTTGGATTATAATTTTAGCACATCCAGCATGCTTATATGACCTTAAAATATTCATGTATATTCTGTCCACTCACCTTTTATTTCTTCATTATTTTACAGGCTTCCCCTGGCCCCAAAAAGATTGTGGGTGTTTTCTACAAAGCAAATGAATATGCTGAAATGAACCCCAACTTTTTGGGCTGTGCAGAAAATGCCTTGGGGATACGTGAATGGTTAGAGTCTAAAGGTCATCAGTACATAGTCACTCCTGACAAAGAAGGACCAGATTGTGGTTAGTTCCTGCTAATCTATAATCTCTCATGTTCTATCCATTATCCCACTGAAGCCTATGCATTTCTAAAGATAATTTCTTTACCCTTCATGCTTGTACAACTAAACACATCTTAAAAGGAGTATTTTTGCATTTAAAACATGCATATATGTGCTGAAGTTTTTTAAAAATATATGGCTCACGTGAGGAGAATATAACGGTCATAGCAGGAACATTTATTTAGATAAAGAGCAAAGCAAAGTAAACAATATTTGCTTTGTTAGTGTTGGTCCTTTGCTGCTAGTGAATTATGATCAGGACATTGTGAGGTAGTTTCTTGCAGGAGGGAAAAAAAGAGTGTATTTTACCTTGATATACAGGTGTGCATTTGCAAAACGTCTATACTTCAGGACTCAGGTGTAAGTTGTACTAGTTTGATAAGACTATGGCTAAATTTTGTAATTTAAACAAGGATTTATCAAAGTCGCAGGGGCTTGTTTAGTTGTTGAGTAGAGTGCACACATGGATGCTTTAGTGATTTTCTGATGGATGACATGCTTAGTGTAAATCCTTGCTTATTAGTATCTTTTATCATGAGAAAGAATGGTGCCCTAGTCTGACACACAAACTACTCTGTGTCTTAGTTTTTCACTGTTGAATCCTTTACTATGCTCTATGCAAAGAAATTTCTCCTGAGCTAAAGTTTTTGAGTGTGTCCATCTATAATAGCTTCTTTTTTTTTTCCCATGACTTTCTCTCTGCAGAGCTTGAGAAACACATTCCTGATCTCCATGTGTTGATTTCGACCCCTTTTCATCCTGCCTATGTCACGGCTGAAAGGATCAAGAAGGCAAAAAATCTACAACTTCTGCTGACAGCTGGAATTGGATCAGATCATGTTGATCTGAAAGCTGCTGCTGCTGCTGGATTGACAGTAGCAGAGGTCACTGGAAGCAATACTGTCTCAGTTGCGGAAGATGAACTGATGCGAATCTTAATTC</genome_strand>
        <mrna_strand>TTATTCTTCTCTCTGTTTTTAGTAAGTACGAAACCCTTTTCTGTAAATCCAAAAAAAATTCCGATGGCGATGAGGCGTGTAGCTTCTACAGCAGCTCGTGCTATTGCTTCACCTTCATCCTTAGTTTTTACCAGAGAACTTCAG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCTTCCCCTGGCCCCAAAAAGATTGTGGGTGTTTTCTACAAAGCAAATGAATATGCTGAAATGAACCCCAACTTTTTGGGCTGTGCAGAAAATGCCTTGGGGATACGTGAATGGTTAGAGTCTAAAGGTCATCAGTACATAGTCACTCCTGACAAAGAAGGACCAGATTGTG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGCTTGAGAAACACATTCCTGATCTCCATGTGTTGATTTCGACCCCTTTTCATCCTGCCTATGTCACGGCTGAAAGGATCAAGAAGGCTAAAAATCTACAACTTCTGCTGACAGCTGGAATTGGATCAGATCATGTTGATCTGAAAGCTGCTGCTGCTGCTGGATTGACAGTAGCAGAGGTCACTGGAAGCAATACTGTCTCAGTTGCGGAAGATGAACTGATGCGAATCTTAATTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0236E02-u8qcS/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E246872" ref_strand="+" ref_description="SGN-E246872 [cLEF-41-O16]">
      <seq>ttattcttctctctgtttttagtaagtacgaaacccttttctgtaaatgcaaaaaaaattccgatggcgatgaggcgtgtagcttctacagcagctcgtgctattgcttcaccttcatccttagtttttaccagagaacttcaggcttcccctggccccaaaaagattgtgggtgttttctacaaagcaaatgaatatgctgaaatgaaccccaactttttgggctgtgcagaaaatgccttggggatacgtgaatggttagagtctaaaggtcatcagtacatagtcactcctgacaaagaaggaccagattgtgagcttgagaaacacattcctgatctccatgtgttgatttcgaccccttttcatcctgcctatgtcacggctgaaaggatcaagaaggcaaaaaatctacaacttctgctgacagctggaattggatcagatcatgttgatctgaaagctgctgctgctgctggattgacagtagcagaggtcactggaagcaatactgtctcagttgcggaagatgaactgatgcgaatcttaattc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0236E02-u8qcS/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0236E02.1" temp_strand="+" temp_description="C02HBa0236E02.1  AC215430.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0236E02 sequenced_by:kribb upload_account_name:korea">
        <position start="65246" stop="68301"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="65546" g_stop="65689" g_length="144"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="144" r_length="144" r_score="0.993"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="65690" i_stop="66849" i_length="1160">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="66850" g_stop="67021" g_length="172"/>
          <reference_exon_boundary r_type="cDNA" r_start="145" r_stop="316" r_length="172" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="67022" i_stop="67764" i_length="743">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="0.987" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="67765" g_stop="68001" g_length="237"/>
          <reference_exon_boundary r_type="cDNA" r_start="317" r_stop="553" r_length="237" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0236E02.1" gen_strand="+" ref_id="SGN-E246872" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>553</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0236E02.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E246872" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="65546" e_stop="65689"/>
          <exon e_start="66850" e_stop="67021"/>
          <exon e_start="67765" e_stop="68001"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTATTCTTCTCTCTGTTTTTAGTAAGTACGAAACCCTTTTCTGTAAATCCAAAAAAAATTCCGATGGCGATGAGGCGTGTAGCTTCTACAGCAGCTCGTGCTATTGCTTCACCTTCATCCTTAGTTTTTACCAGAGAACTTCAGGTAACTAGCCATTTCTCCTCAATAGCCACTTTTTGTTGCTTTTGTTTTATATGACCTAGTTTTCGCCCTTTGATGAATTATCGGAAACCGGCACGGATCAACTCCGATTTTTCGAGAATCAAGTGAGTTGGAGATTGGAACAGAGGAAACTAAAGGAATTTAACCGTGTAAAGGAAAAAATTAAACACACTGTATTTGGTGCTCTACCCCTCGTCTCTTCTTTTTGGCTTTCCCCGTACTCTACACACCAAATGAAATGGCTCGGATATGAAAGGACTAATAACTTTTCAGTTTTCATTACTGCGTCCTTTTTTAAGCTTTCAGTTTTAATTTGCGTGAATATACCTAATTTTTATTAGGGTAGAGTTATATGTTTCAAATTAAATTGCTACCAAGTTAAATTTAAGAATGTTACATAAATTTAGAGACGGCAAGTTTATATACCAAGAAGGGTACTCCTTCATCCACAGAGAAACGGTGTCCAGTTCGAGTATGGGCGTGAATCTAGATATAGTTAATTCCAATGCAGATATCAGACATCGAGTGAGGAAAAAAAAGATTTTATTAATTTGTTATTTTTAGGTTGCTTTTCCTTTAACTGAAAATCTAACCCGGCAGGACCACAACAGTTCTTTTCCGATCATTACTAATGATACTTGATTTTCACGTGCGATTTCTGATATTTTTATACGGAGTAGGTGAAGAGTGAAATGTTTCACGGGTCTCAAGGACAATGGCAGCAGTGCTTCATTTTTTTTTGCATCTTCACGTGCTATATTATTACTTTGTTTATACTAGTTCGACTTGGAAAATCTTTTCATATTCAGTTGTCTGGGGAATAAATAAGATATTTCTTATTTTTTGATTAAAAAAAGAAGAAGATATTTCTTATTTAAAGAAGTGACAAATTGTACTAACTCATTTACCATGCCTAATATATTATATGTGACAATGATGATTTTTTTTAACTATTAATTGTTAGTTTGGACAAAAATGATCAAAGCAAGTATATTGAATAATGCTTATTTCTTGCCAACTGGTGCATCTACGAGATTATAGGAGTTGGATTATAATTTTAGCACATCCAGCATGCTTATATGACCTTAAAATATTCATGTATATTCTGTCCACTCACCTTTTATTTCTTCATTATTTTACAGGCTTCCCCTGGCCCCAAAAAGATTGTGGGTGTTTTCTACAAAGCAAATGAATATGCTGAAATGAACCCCAACTTTTTGGGCTGTGCAGAAAATGCCTTGGGGATACGTGAATGGTTAGAGTCTAAAGGTCATCAGTACATAGTCACTCCTGACAAAGAAGGACCAGATTGTGGTTAGTTCCTGCTAATCTATAATCTCTCATGTTCTATCCATTATCCCACTGAAGCCTATGCATTTCTAAAGATAATTTCTTTACCCTTCATGCTTGTACAACTAAACACATCTTAAAAGGAGTATTTTTGCATTTAAAACATGCATATATGTGCTGAAGTTTTTTAAAAATATATGGCTCACGTGAGGAGAATATAACGGTCATAGCAGGAACATTTATTTAGATAAAGAGCAAAGCAAAGTAAACAATATTTGCTTTGTTAGTGTTGGTCCTTTGCTGCTAGTGAATTATGATCAGGACATTGTGAGGTAGTTTCTTGCAGGAGGGAAAAAAAGAGTGTATTTTACCTTGATATACAGGTGTGCATTTGCAAAACGTCTATACTTCAGGACTCAGGTGTAAGTTGTACTAGTTTGATAAGACTATGGCTAAATTTTGTAATTTAAACAAGGATTTATCAAAGTCGCAGGGGCTTGTTTAGTTGTTGAGTAGAGTGCACACATGGATGCTTTAGTGATTTTCTGATGGATGACATGCTTAGTGTAAATCCTTGCTTATTAGTATCTTTTATCATGAGAAAGAATGGTGCCCTAGTCTGACACACAAACTACTCTGTGTCTTAGTTTTTCACTGTTGAATCCTTTACTATGCTCTATGCAAAGAAATTTCTCCTGAGCTAAAGTTTTTGAGTGTGTCCATCTATAATAGCTTCTTTTTTTTTTCCCATGACTTTCTCTCTGCAGAGCTTGAGAAACACATTCCTGATCTCCATGTGTTGATTTCGACCCCTTTTCATCCTGCCTATGTCACGGCTGAAAGGATCAAGAAGGCAAAAAATCTACAACTTCTGCTGACAGCTGGAATTGGATCAGATCATGTTGATCTGAAAGCTGCTGCTGCTGCTGGATTGACAGTAGCAGAGGTCACTGGAAGCAATACTGTCTCAGTTGCGGAAGATGAACTGATGCGAATCTTAATTC</genome_strand>
        <mrna_strand>TTATTCTTCTCTCTGTTTTTAGTAAGTACGAAACCCTTTTCTGTAAATGCAAAAAAAATTCCGATGGCGATGAGGCGTGTAGCTTCTACAGCAGCTCGTGCTATTGCTTCACCTTCATCCTTAGTTTTTACCAGAGAACTTCAG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCTTCCCCTGGCCCCAAAAAGATTGTGGGTGTTTTCTACAAAGCAAATGAATATGCTGAAATGAACCCCAACTTTTTGGGCTGTGCAGAAAATGCCTTGGGGATACGTGAATGGTTAGAGTCTAAAGGTCATCAGTACATAGTCACTCCTGACAAAGAAGGACCAGATTGTG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGCTTGAGAAACACATTCCTGATCTCCATGTGTTGATTTCGACCCCTTTTCATCCTGCCTATGTCACGGCTGAAAGGATCAAGAAGGCAAAAAATCTACAACTTCTGCTGACAGCTGGAATTGGATCAGATCATGTTGATCTGAAAGCTGCTGCTGCTGCTGGATTGACAGTAGCAGAGGTCACTGGAAGCAATACTGTCTCAGTTGCGGAAGATGAACTGATGCGAATCTTAATTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0236E02-u8qcS/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E446540" ref_strand="+" ref_description="SGN-E446540 [cSTA-21-F12]">
      <seq>gtattcttctctctgtttttaccaagtacaaaaccctttgctgtaaatccaaaaaattccgatggcgatgagtcgtgtagcttctacagcagctcgtgctattacttcaccttcatccttagtttttaccagagaacttcaggcttcccctggccccaaaaagattgtgggtgttttctacaaagcaaatgaatatgctgaaatgaaccccaactttttgggctgtgcagaaaatgccttggggatacgtgaatggttagaatctaaaggtcatcagtacatagtcactcctgacaaagaaggaccggattgtgagcttgagaaacacattcctgatctccatgtgttgatttcgaccccttttcatcctgcctatgtcacggctgaaaggatcaagaaggcaaaaaatctacaactactgctgacagctggaattggatcagatcatgttgatctgaaagctgctgctgctgctggattgacagtagcagaggtcactggaagcaatactgtctcagttgcggaagatgaactgatgcgaatc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0236E02-u8qcS/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0236E02.1" temp_strand="+" temp_description="C02HBa0236E02.1  AC215430.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0236E02 sequenced_by:kribb upload_account_name:korea">
        <position start="65247" stop="68294"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="65546" g_stop="65689" g_length="144"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="142" r_length="142" r_score="0.938"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="65690" i_stop="66849" i_length="1160">
            <donor d_prob="1.000" d_score="0.98"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="66850" g_stop="67021" g_length="172"/>
          <reference_exon_boundary r_type="cDNA" r_start="143" r_stop="314" r_length="172" r_score="0.988"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="67022" i_stop="67764" i_length="743">
            <donor d_prob="0.994" d_score="0.98"/>
            <acceptor a_prob="0.987" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="67765" g_stop="67994" g_length="230"/>
          <reference_exon_boundary r_type="cDNA" r_start="315" r_stop="544" r_length="230" r_score="0.996"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0236E02.1" gen_strand="+" ref_id="SGN-E446540" ref_strand="+">
        <total_alignment_score>0.978</total_alignment_score>
        <cumulative_length_of_scored_exons>546</cumulative_length_of_scored_exons>
        <coverage percentage="1.004" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0236E02.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E446540" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="65546" e_stop="65689"/>
          <exon e_start="66850" e_stop="67021"/>
          <exon e_start="67765" e_stop="67994"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTATTCTTCTCTCTGTTTTTAGTAAGTACGAAACCCTTTTCTGTAAATCCAAAAAAAATTCCGATGGCGATGAGGCGTGTAGCTTCTACAGCAGCTCGTGCTATTGCTTCACCTTCATCCTTAGTTTTTACCAGAGAACTTCAGGTAACTAGCCATTTCTCCTCAATAGCCACTTTTTGTTGCTTTTGTTTTATATGACCTAGTTTTCGCCCTTTGATGAATTATCGGAAACCGGCACGGATCAACTCCGATTTTTCGAGAATCAAGTGAGTTGGAGATTGGAACAGAGGAAACTAAAGGAATTTAACCGTGTAAAGGAAAAAATTAAACACACTGTATTTGGTGCTCTACCCCTCGTCTCTTCTTTTTGGCTTTCCCCGTACTCTACACACCAAATGAAATGGCTCGGATATGAAAGGACTAATAACTTTTCAGTTTTCATTACTGCGTCCTTTTTTAAGCTTTCAGTTTTAATTTGCGTGAATATACCTAATTTTTATTAGGGTAGAGTTATATGTTTCAAATTAAATTGCTACCAAGTTAAATTTAAGAATGTTACATAAATTTAGAGACGGCAAGTTTATATACCAAGAAGGGTACTCCTTCATCCACAGAGAAACGGTGTCCAGTTCGAGTATGGGCGTGAATCTAGATATAGTTAATTCCAATGCAGATATCAGACATCGAGTGAGGAAAAAAAAGATTTTATTAATTTGTTATTTTTAGGTTGCTTTTCCTTTAACTGAAAATCTAACCCGGCAGGACCACAACAGTTCTTTTCCGATCATTACTAATGATACTTGATTTTCACGTGCGATTTCTGATATTTTTATACGGAGTAGGTGAAGAGTGAAATGTTTCACGGGTCTCAAGGACAATGGCAGCAGTGCTTCATTTTTTTTTGCATCTTCACGTGCTATATTATTACTTTGTTTATACTAGTTCGACTTGGAAAATCTTTTCATATTCAGTTGTCTGGGGAATAAATAAGATATTTCTTATTTTTTGATTAAAAAAAGAAGAAGATATTTCTTATTTAAAGAAGTGACAAATTGTACTAACTCATTTACCATGCCTAATATATTATATGTGACAATGATGATTTTTTTTAACTATTAATTGTTAGTTTGGACAAAAATGATCAAAGCAAGTATATTGAATAATGCTTATTTCTTGCCAACTGGTGCATCTACGAGATTATAGGAGTTGGATTATAATTTTAGCACATCCAGCATGCTTATATGACCTTAAAATATTCATGTATATTCTGTCCACTCACCTTTTATTTCTTCATTATTTTACAGGCTTCCCCTGGCCCCAAAAAGATTGTGGGTGTTTTCTACAAAGCAAATGAATATGCTGAAATGAACCCCAACTTTTTGGGCTGTGCAGAAAATGCCTTGGGGATACGTGAATGGTTAGAGTCTAAAGGTCATCAGTACATAGTCACTCCTGACAAAGAAGGACCAGATTGTGGTTAGTTCCTGCTAATCTATAATCTCTCATGTTCTATCCATTATCCCACTGAAGCCTATGCATTTCTAAAGATAATTTCTTTACCCTTCATGCTTGTACAACTAAACACATCTTAAAAGGAGTATTTTTGCATTTAAAACATGCATATATGTGCTGAAGTTTTTTAAAAATATATGGCTCACGTGAGGAGAATATAACGGTCATAGCAGGAACATTTATTTAGATAAAGAGCAAAGCAAAGTAAACAATATTTGCTTTGTTAGTGTTGGTCCTTTGCTGCTAGTGAATTATGATCAGGACATTGTGAGGTAGTTTCTTGCAGGAGGGAAAAAAAGAGTGTATTTTACCTTGATATACAGGTGTGCATTTGCAAAACGTCTATACTTCAGGACTCAGGTGTAAGTTGTACTAGTTTGATAAGACTATGGCTAAATTTTGTAATTTAAACAAGGATTTATCAAAGTCGCAGGGGCTTGTTTAGTTGTTGAGTAGAGTGCACACATGGATGCTTTAGTGATTTTCTGATGGATGACATGCTTAGTGTAAATCCTTGCTTATTAGTATCTTTTATCATGAGAAAGAATGGTGCCCTAGTCTGACACACAAACTACTCTGTGTCTTAGTTTTTCACTGTTGAATCCTTTACTATGCTCTATGCAAAGAAATTTCTCCTGAGCTAAAGTTTTTGAGTGTGTCCATCTATAATAGCTTCTTTTTTTTTTCCCATGACTTTCTCTCTGCAGAGCTTGAGAAACACATTCCTGATCTCCATGTGTTGATTTCGACCCCTTTTCATCCTGCCTATGTCACGGCTGAAAGGATCAAGAAGGCAAAAAATCTACAACTTCTGCTGACAGCTGGAATTGGATCAGATCATGTTGATCTGAAAGCTGCTGCTGCTGCTGGATTGACAGTAGCAGAGGTCACTGGAAGCAATACTGTCTCAGTTGCGGAAGATGAACTGATGCGAATC</genome_strand>
        <mrna_strand>GTATTCTTCTCTCTGTTTTTACCAAGTACAAAACCCTTTGCTGTAAATCC--AAAAAATTCCGATGGCGATGAGTCGTGTAGCTTCTACAGCAGCTCGTGCTATTACTTCACCTTCATCCTTAGTTTTTACCAGAGAACTTCAG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCTTCCCCTGGCCCCAAAAAGATTGTGGGTGTTTTCTACAAAGCAAATGAATATGCTGAAATGAACCCCAACTTTTTGGGCTGTGCAGAAAATGCCTTGGGGATACGTGAATGGTTAGAATCTAAAGGTCATCAGTACATAGTCACTCCTGACAAAGAAGGACCGGATTGTG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGCTTGAGAAACACATTCCTGATCTCCATGTGTTGATTTCGACCCCTTTTCATCCTGCCTATGTCACGGCTGAAAGGATCAAGAAGGCAAAAAATCTACAACTACTGCTGACAGCTGGAATTGGATCAGATCATGTTGATCTGAAAGCTGCTGCTGCTGCTGGATTGACAGTAGCAGAGGTCACTGGAAGCAATACTGTCTCAGTTGCGGAAGATGAACTGATGCGAATC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0236E02-u8qcS/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E246304" ref_strand="+" ref_description="SGN-E246304 [cLEF-40-J15]">
      <seq>ttattcttctctctgtttttagtaagtacgaaacccttttctgtaaatccaaaaaaaattccgatggcgatgaggcgtgtagcttctacagcagctcgtgctattgcttcaccttcatccttagtttttaccagagaacttcaggcttcccctggccccaaaaagattgtgggtgttttctacaaagcaaatgaatatgctgaaatgaaccccaactttttgggctgtgcagaaaatgccttggggatacgtgaatggttagagtctaaaggtcatcagtacatagtcactcctgacaaagaaggaccagattgtgagcttgagaaacacattcctgatctccatgtgttgatttcgaccccttttcatcctgcctatgtcacggctgaaaggatcaagaaggcaaaaaatctacaacttctgctgacagctggaattggatcagatcatgttgatctgaaagctgctgctgctgctggattgacagtagcagaggtcactggaagcaatactgtctc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0236E02-u8qcS/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0236E02.1" temp_strand="+" temp_description="C02HBa0236E02.1  AC215430.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0236E02 sequenced_by:kribb upload_account_name:korea">
        <position start="65246" stop="68266"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="65546" g_stop="65689" g_length="144"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="144" r_length="144" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="65690" i_stop="66849" i_length="1160">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="66850" g_stop="67021" g_length="172"/>
          <reference_exon_boundary r_type="cDNA" r_start="145" r_stop="316" r_length="172" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="67022" i_stop="67764" i_length="743">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="0.987" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="67765" g_stop="67966" g_length="202"/>
          <reference_exon_boundary r_type="cDNA" r_start="317" r_stop="518" r_length="202" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0236E02.1" gen_strand="+" ref_id="SGN-E246304" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>518</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0236E02.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E246304" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="65546" e_stop="65689"/>
          <exon e_start="66850" e_stop="67021"/>
          <exon e_start="67765" e_stop="67966"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTATTCTTCTCTCTGTTTTTAGTAAGTACGAAACCCTTTTCTGTAAATCCAAAAAAAATTCCGATGGCGATGAGGCGTGTAGCTTCTACAGCAGCTCGTGCTATTGCTTCACCTTCATCCTTAGTTTTTACCAGAGAACTTCAGGTAACTAGCCATTTCTCCTCAATAGCCACTTTTTGTTGCTTTTGTTTTATATGACCTAGTTTTCGCCCTTTGATGAATTATCGGAAACCGGCACGGATCAACTCCGATTTTTCGAGAATCAAGTGAGTTGGAGATTGGAACAGAGGAAACTAAAGGAATTTAACCGTGTAAAGGAAAAAATTAAACACACTGTATTTGGTGCTCTACCCCTCGTCTCTTCTTTTTGGCTTTCCCCGTACTCTACACACCAAATGAAATGGCTCGGATATGAAAGGACTAATAACTTTTCAGTTTTCATTACTGCGTCCTTTTTTAAGCTTTCAGTTTTAATTTGCGTGAATATACCTAATTTTTATTAGGGTAGAGTTATATGTTTCAAATTAAATTGCTACCAAGTTAAATTTAAGAATGTTACATAAATTTAGAGACGGCAAGTTTATATACCAAGAAGGGTACTCCTTCATCCACAGAGAAACGGTGTCCAGTTCGAGTATGGGCGTGAATCTAGATATAGTTAATTCCAATGCAGATATCAGACATCGAGTGAGGAAAAAAAAGATTTTATTAATTTGTTATTTTTAGGTTGCTTTTCCTTTAACTGAAAATCTAACCCGGCAGGACCACAACAGTTCTTTTCCGATCATTACTAATGATACTTGATTTTCACGTGCGATTTCTGATATTTTTATACGGAGTAGGTGAAGAGTGAAATGTTTCACGGGTCTCAAGGACAATGGCAGCAGTGCTTCATTTTTTTTTGCATCTTCACGTGCTATATTATTACTTTGTTTATACTAGTTCGACTTGGAAAATCTTTTCATATTCAGTTGTCTGGGGAATAAATAAGATATTTCTTATTTTTTGATTAAAAAAAGAAGAAGATATTTCTTATTTAAAGAAGTGACAAATTGTACTAACTCATTTACCATGCCTAATATATTATATGTGACAATGATGATTTTTTTTAACTATTAATTGTTAGTTTGGACAAAAATGATCAAAGCAAGTATATTGAATAATGCTTATTTCTTGCCAACTGGTGCATCTACGAGATTATAGGAGTTGGATTATAATTTTAGCACATCCAGCATGCTTATATGACCTTAAAATATTCATGTATATTCTGTCCACTCACCTTTTATTTCTTCATTATTTTACAGGCTTCCCCTGGCCCCAAAAAGATTGTGGGTGTTTTCTACAAAGCAAATGAATATGCTGAAATGAACCCCAACTTTTTGGGCTGTGCAGAAAATGCCTTGGGGATACGTGAATGGTTAGAGTCTAAAGGTCATCAGTACATAGTCACTCCTGACAAAGAAGGACCAGATTGTGGTTAGTTCCTGCTAATCTATAATCTCTCATGTTCTATCCATTATCCCACTGAAGCCTATGCATTTCTAAAGATAATTTCTTTACCCTTCATGCTTGTACAACTAAACACATCTTAAAAGGAGTATTTTTGCATTTAAAACATGCATATATGTGCTGAAGTTTTTTAAAAATATATGGCTCACGTGAGGAGAATATAACGGTCATAGCAGGAACATTTATTTAGATAAAGAGCAAAGCAAAGTAAACAATATTTGCTTTGTTAGTGTTGGTCCTTTGCTGCTAGTGAATTATGATCAGGACATTGTGAGGTAGTTTCTTGCAGGAGGGAAAAAAAGAGTGTATTTTACCTTGATATACAGGTGTGCATTTGCAAAACGTCTATACTTCAGGACTCAGGTGTAAGTTGTACTAGTTTGATAAGACTATGGCTAAATTTTGTAATTTAAACAAGGATTTATCAAAGTCGCAGGGGCTTGTTTAGTTGTTGAGTAGAGTGCACACATGGATGCTTTAGTGATTTTCTGATGGATGACATGCTTAGTGTAAATCCTTGCTTATTAGTATCTTTTATCATGAGAAAGAATGGTGCCCTAGTCTGACACACAAACTACTCTGTGTCTTAGTTTTTCACTGTTGAATCCTTTACTATGCTCTATGCAAAGAAATTTCTCCTGAGCTAAAGTTTTTGAGTGTGTCCATCTATAATAGCTTCTTTTTTTTTTCCCATGACTTTCTCTCTGCAGAGCTTGAGAAACACATTCCTGATCTCCATGTGTTGATTTCGACCCCTTTTCATCCTGCCTATGTCACGGCTGAAAGGATCAAGAAGGCAAAAAATCTACAACTTCTGCTGACAGCTGGAATTGGATCAGATCATGTTGATCTGAAAGCTGCTGCTGCTGCTGGATTGACAGTAGCAGAGGTCACTGGAAGCAATACTGTCTC</genome_strand>
        <mrna_strand>TTATTCTTCTCTCTGTTTTTAGTAAGTACGAAACCCTTTTCTGTAAATCCAAAAAAAATTCCGATGGCGATGAGGCGTGTAGCTTCTACAGCAGCTCGTGCTATTGCTTCACCTTCATCCTTAGTTTTTACCAGAGAACTTCAG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCTTCCCCTGGCCCCAAAAAGATTGTGGGTGTTTTCTACAAAGCAAATGAATATGCTGAAATGAACCCCAACTTTTTGGGCTGTGCAGAAAATGCCTTGGGGATACGTGAATGGTTAGAGTCTAAAGGTCATCAGTACATAGTCACTCCTGACAAAGAAGGACCAGATTGTG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGCTTGAGAAACACATTCCTGATCTCCATGTGTTGATTTCGACCCCTTTTCATCCTGCCTATGTCACGGCTGAAAGGATCAAGAAGGCAAAAAATCTACAACTTCTGCTGACAGCTGGAATTGGATCAGATCATGTTGATCTGAAAGCTGCTGCTGCTGCTGGATTGACAGTAGCAGAGGTCACTGGAAGCAATACTGTCTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0236E02-u8qcS/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E247734" ref_strand="+" ref_description="SGN-E247734 [cLEF-42-B17]">
      <seq>ttattcttctctctgtttttagtaagtacgaaacccttttctgtaaatccaaaaaaaattccgatggcgatgaggcgtgtagcttctacagcagctcgtgctattgcttcaccttcatccttagtttttaccagagaacttcaagcttcccctggccccaaaaagattgtgggtgttttctacaaagcaaatgaatatgctgaaatgaaccccaactttttgggctgtgcagaaaatgccttggggatacgtgaatggttagagtctaaaggtcatcagtacatagtcactcctgacaaagaaggaccagattgtgagcttgagaaacacattcctgatctccatgtgttgatttcgaccccttttcatcctgcctatgtcacggctgaaaggatcaagaaggcaaaaaatctacaacttctgctgacagctggaattggatcagatcatgttgatctgaaagctgctgctgctgctggattgacagtagcagaggtcactggaagcaatact</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0236E02-u8qcS/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0236E02.1" temp_strand="+" temp_description="C02HBa0236E02.1  AC215430.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0236E02 sequenced_by:kribb upload_account_name:korea">
        <position start="65246" stop="68261"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="65546" g_stop="65689" g_length="144"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="144" r_length="144" r_score="0.993"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="65690" i_stop="66849" i_length="1160">
            <donor d_prob="1.000" d_score="0.98"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="66850" g_stop="67021" g_length="172"/>
          <reference_exon_boundary r_type="cDNA" r_start="145" r_stop="316" r_length="172" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="67022" i_stop="67764" i_length="743">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="0.987" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="67765" g_stop="67961" g_length="197"/>
          <reference_exon_boundary r_type="cDNA" r_start="317" r_stop="513" r_length="197" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0236E02.1" gen_strand="+" ref_id="SGN-E247734" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>513</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0236E02.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E247734" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="65546" e_stop="65689"/>
          <exon e_start="66850" e_stop="67021"/>
          <exon e_start="67765" e_stop="67961"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTATTCTTCTCTCTGTTTTTAGTAAGTACGAAACCCTTTTCTGTAAATCCAAAAAAAATTCCGATGGCGATGAGGCGTGTAGCTTCTACAGCAGCTCGTGCTATTGCTTCACCTTCATCCTTAGTTTTTACCAGAGAACTTCAGGTAACTAGCCATTTCTCCTCAATAGCCACTTTTTGTTGCTTTTGTTTTATATGACCTAGTTTTCGCCCTTTGATGAATTATCGGAAACCGGCACGGATCAACTCCGATTTTTCGAGAATCAAGTGAGTTGGAGATTGGAACAGAGGAAACTAAAGGAATTTAACCGTGTAAAGGAAAAAATTAAACACACTGTATTTGGTGCTCTACCCCTCGTCTCTTCTTTTTGGCTTTCCCCGTACTCTACACACCAAATGAAATGGCTCGGATATGAAAGGACTAATAACTTTTCAGTTTTCATTACTGCGTCCTTTTTTAAGCTTTCAGTTTTAATTTGCGTGAATATACCTAATTTTTATTAGGGTAGAGTTATATGTTTCAAATTAAATTGCTACCAAGTTAAATTTAAGAATGTTACATAAATTTAGAGACGGCAAGTTTATATACCAAGAAGGGTACTCCTTCATCCACAGAGAAACGGTGTCCAGTTCGAGTATGGGCGTGAATCTAGATATAGTTAATTCCAATGCAGATATCAGACATCGAGTGAGGAAAAAAAAGATTTTATTAATTTGTTATTTTTAGGTTGCTTTTCCTTTAACTGAAAATCTAACCCGGCAGGACCACAACAGTTCTTTTCCGATCATTACTAATGATACTTGATTTTCACGTGCGATTTCTGATATTTTTATACGGAGTAGGTGAAGAGTGAAATGTTTCACGGGTCTCAAGGACAATGGCAGCAGTGCTTCATTTTTTTTTGCATCTTCACGTGCTATATTATTACTTTGTTTATACTAGTTCGACTTGGAAAATCTTTTCATATTCAGTTGTCTGGGGAATAAATAAGATATTTCTTATTTTTTGATTAAAAAAAGAAGAAGATATTTCTTATTTAAAGAAGTGACAAATTGTACTAACTCATTTACCATGCCTAATATATTATATGTGACAATGATGATTTTTTTTAACTATTAATTGTTAGTTTGGACAAAAATGATCAAAGCAAGTATATTGAATAATGCTTATTTCTTGCCAACTGGTGCATCTACGAGATTATAGGAGTTGGATTATAATTTTAGCACATCCAGCATGCTTATATGACCTTAAAATATTCATGTATATTCTGTCCACTCACCTTTTATTTCTTCATTATTTTACAGGCTTCCCCTGGCCCCAAAAAGATTGTGGGTGTTTTCTACAAAGCAAATGAATATGCTGAAATGAACCCCAACTTTTTGGGCTGTGCAGAAAATGCCTTGGGGATACGTGAATGGTTAGAGTCTAAAGGTCATCAGTACATAGTCACTCCTGACAAAGAAGGACCAGATTGTGGTTAGTTCCTGCTAATCTATAATCTCTCATGTTCTATCCATTATCCCACTGAAGCCTATGCATTTCTAAAGATAATTTCTTTACCCTTCATGCTTGTACAACTAAACACATCTTAAAAGGAGTATTTTTGCATTTAAAACATGCATATATGTGCTGAAGTTTTTTAAAAATATATGGCTCACGTGAGGAGAATATAACGGTCATAGCAGGAACATTTATTTAGATAAAGAGCAAAGCAAAGTAAACAATATTTGCTTTGTTAGTGTTGGTCCTTTGCTGCTAGTGAATTATGATCAGGACATTGTGAGGTAGTTTCTTGCAGGAGGGAAAAAAAGAGTGTATTTTACCTTGATATACAGGTGTGCATTTGCAAAACGTCTATACTTCAGGACTCAGGTGTAAGTTGTACTAGTTTGATAAGACTATGGCTAAATTTTGTAATTTAAACAAGGATTTATCAAAGTCGCAGGGGCTTGTTTAGTTGTTGAGTAGAGTGCACACATGGATGCTTTAGTGATTTTCTGATGGATGACATGCTTAGTGTAAATCCTTGCTTATTAGTATCTTTTATCATGAGAAAGAATGGTGCCCTAGTCTGACACACAAACTACTCTGTGTCTTAGTTTTTCACTGTTGAATCCTTTACTATGCTCTATGCAAAGAAATTTCTCCTGAGCTAAAGTTTTTGAGTGTGTCCATCTATAATAGCTTCTTTTTTTTTTCCCATGACTTTCTCTCTGCAGAGCTTGAGAAACACATTCCTGATCTCCATGTGTTGATTTCGACCCCTTTTCATCCTGCCTATGTCACGGCTGAAAGGATCAAGAAGGCAAAAAATCTACAACTTCTGCTGACAGCTGGAATTGGATCAGATCATGTTGATCTGAAAGCTGCTGCTGCTGCTGGATTGACAGTAGCAGAGGTCACTGGAAGCAATACT</genome_strand>
        <mrna_strand>TTATTCTTCTCTCTGTTTTTAGTAAGTACGAAACCCTTTTCTGTAAATCCAAAAAAAATTCCGATGGCGATGAGGCGTGTAGCTTCTACAGCAGCTCGTGCTATTGCTTCACCTTCATCCTTAGTTTTTACCAGAGAACTTCAA........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCTTCCCCTGGCCCCAAAAAGATTGTGGGTGTTTTCTACAAAGCAAATGAATATGCTGAAATGAACCCCAACTTTTTGGGCTGTGCAGAAAATGCCTTGGGGATACGTGAATGGTTAGAGTCTAAAGGTCATCAGTACATAGTCACTCCTGACAAAGAAGGACCAGATTGTG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGCTTGAGAAACACATTCCTGATCTCCATGTGTTGATTTCGACCCCTTTTCATCCTGCCTATGTCACGGCTGAAAGGATCAAGAAGGCAAAAAATCTACAACTTCTGCTGACAGCTGGAATTGGATCAGATCATGTTGATCTGAAAGCTGCTGCTGCTGCTGGATTGACAGTAGCAGAGGTCACTGGAAGCAATACT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0236E02-u8qcS/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E201817" ref_strand="+" ref_description="SGN-E201817 [cLEC-11-D18]">
      <seq>ttattcttctctctgtttttagtaagtacgaaacccttttctgtaaatccaaaaaaaattccgatggcgatgaggcgtgtagcttctacagcagctcgtgctattgcttcaccttcatccttagtttttaccagagaacttcaggcttcccctggccccaaaaagattgtgggtgttttctacaaagcaaatgaatatgctgaaatgaaccccaactttttgggctgtgcagaaaatgccttggggatacgtgaatggttagagtctaaaggtcatcagtacatagtcactcctgacaaagaaggaccagattgtgagcttgagaaacacattcctgatctccatgtgttgatttcgaccccttttcatcctgcctatgtcacggctgaaaggatcaagaaggcaaaaaatctacaacttctgctgacagctggaattggatcagatcatgttgatctgaaagctgctgctgctgctggattgacagtagc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0236E02-u8qcS/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0236E02.1" temp_strand="+" temp_description="C02HBa0236E02.1  AC215430.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0236E02 sequenced_by:kribb upload_account_name:korea">
        <position start="65246" stop="68239"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="65546" g_stop="65689" g_length="144"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="144" r_length="144" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="65690" i_stop="66849" i_length="1160">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="66850" g_stop="67021" g_length="172"/>
          <reference_exon_boundary r_type="cDNA" r_start="145" r_stop="316" r_length="172" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="67022" i_stop="67764" i_length="743">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="0.987" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="67765" g_stop="67939" g_length="175"/>
          <reference_exon_boundary r_type="cDNA" r_start="317" r_stop="491" r_length="175" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0236E02.1" gen_strand="+" ref_id="SGN-E201817" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>491</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0236E02.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E201817" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="65546" e_stop="65689"/>
          <exon e_start="66850" e_stop="67021"/>
          <exon e_start="67765" e_stop="67939"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTATTCTTCTCTCTGTTTTTAGTAAGTACGAAACCCTTTTCTGTAAATCCAAAAAAAATTCCGATGGCGATGAGGCGTGTAGCTTCTACAGCAGCTCGTGCTATTGCTTCACCTTCATCCTTAGTTTTTACCAGAGAACTTCAGGTAACTAGCCATTTCTCCTCAATAGCCACTTTTTGTTGCTTTTGTTTTATATGACCTAGTTTTCGCCCTTTGATGAATTATCGGAAACCGGCACGGATCAACTCCGATTTTTCGAGAATCAAGTGAGTTGGAGATTGGAACAGAGGAAACTAAAGGAATTTAACCGTGTAAAGGAAAAAATTAAACACACTGTATTTGGTGCTCTACCCCTCGTCTCTTCTTTTTGGCTTTCCCCGTACTCTACACACCAAATGAAATGGCTCGGATATGAAAGGACTAATAACTTTTCAGTTTTCATTACTGCGTCCTTTTTTAAGCTTTCAGTTTTAATTTGCGTGAATATACCTAATTTTTATTAGGGTAGAGTTATATGTTTCAAATTAAATTGCTACCAAGTTAAATTTAAGAATGTTACATAAATTTAGAGACGGCAAGTTTATATACCAAGAAGGGTACTCCTTCATCCACAGAGAAACGGTGTCCAGTTCGAGTATGGGCGTGAATCTAGATATAGTTAATTCCAATGCAGATATCAGACATCGAGTGAGGAAAAAAAAGATTTTATTAATTTGTTATTTTTAGGTTGCTTTTCCTTTAACTGAAAATCTAACCCGGCAGGACCACAACAGTTCTTTTCCGATCATTACTAATGATACTTGATTTTCACGTGCGATTTCTGATATTTTTATACGGAGTAGGTGAAGAGTGAAATGTTTCACGGGTCTCAAGGACAATGGCAGCAGTGCTTCATTTTTTTTTGCATCTTCACGTGCTATATTATTACTTTGTTTATACTAGTTCGACTTGGAAAATCTTTTCATATTCAGTTGTCTGGGGAATAAATAAGATATTTCTTATTTTTTGATTAAAAAAAGAAGAAGATATTTCTTATTTAAAGAAGTGACAAATTGTACTAACTCATTTACCATGCCTAATATATTATATGTGACAATGATGATTTTTTTTAACTATTAATTGTTAGTTTGGACAAAAATGATCAAAGCAAGTATATTGAATAATGCTTATTTCTTGCCAACTGGTGCATCTACGAGATTATAGGAGTTGGATTATAATTTTAGCACATCCAGCATGCTTATATGACCTTAAAATATTCATGTATATTCTGTCCACTCACCTTTTATTTCTTCATTATTTTACAGGCTTCCCCTGGCCCCAAAAAGATTGTGGGTGTTTTCTACAAAGCAAATGAATATGCTGAAATGAACCCCAACTTTTTGGGCTGTGCAGAAAATGCCTTGGGGATACGTGAATGGTTAGAGTCTAAAGGTCATCAGTACATAGTCACTCCTGACAAAGAAGGACCAGATTGTGGTTAGTTCCTGCTAATCTATAATCTCTCATGTTCTATCCATTATCCCACTGAAGCCTATGCATTTCTAAAGATAATTTCTTTACCCTTCATGCTTGTACAACTAAACACATCTTAAAAGGAGTATTTTTGCATTTAAAACATGCATATATGTGCTGAAGTTTTTTAAAAATATATGGCTCACGTGAGGAGAATATAACGGTCATAGCAGGAACATTTATTTAGATAAAGAGCAAAGCAAAGTAAACAATATTTGCTTTGTTAGTGTTGGTCCTTTGCTGCTAGTGAATTATGATCAGGACATTGTGAGGTAGTTTCTTGCAGGAGGGAAAAAAAGAGTGTATTTTACCTTGATATACAGGTGTGCATTTGCAAAACGTCTATACTTCAGGACTCAGGTGTAAGTTGTACTAGTTTGATAAGACTATGGCTAAATTTTGTAATTTAAACAAGGATTTATCAAAGTCGCAGGGGCTTGTTTAGTTGTTGAGTAGAGTGCACACATGGATGCTTTAGTGATTTTCTGATGGATGACATGCTTAGTGTAAATCCTTGCTTATTAGTATCTTTTATCATGAGAAAGAATGGTGCCCTAGTCTGACACACAAACTACTCTGTGTCTTAGTTTTTCACTGTTGAATCCTTTACTATGCTCTATGCAAAGAAATTTCTCCTGAGCTAAAGTTTTTGAGTGTGTCCATCTATAATAGCTTCTTTTTTTTTTCCCATGACTTTCTCTCTGCAGAGCTTGAGAAACACATTCCTGATCTCCATGTGTTGATTTCGACCCCTTTTCATCCTGCCTATGTCACGGCTGAAAGGATCAAGAAGGCAAAAAATCTACAACTTCTGCTGACAGCTGGAATTGGATCAGATCATGTTGATCTGAAAGCTGCTGCTGCTGCTGGATTGACAGTAGC</genome_strand>
        <mrna_strand>TTATTCTTCTCTCTGTTTTTAGTAAGTACGAAACCCTTTTCTGTAAATCCAAAAAAAATTCCGATGGCGATGAGGCGTGTAGCTTCTACAGCAGCTCGTGCTATTGCTTCACCTTCATCCTTAGTTTTTACCAGAGAACTTCAG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCTTCCCCTGGCCCCAAAAAGATTGTGGGTGTTTTCTACAAAGCAAATGAATATGCTGAAATGAACCCCAACTTTTTGGGCTGTGCAGAAAATGCCTTGGGGATACGTGAATGGTTAGAGTCTAAAGGTCATCAGTACATAGTCACTCCTGACAAAGAAGGACCAGATTGTG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGCTTGAGAAACACATTCCTGATCTCCATGTGTTGATTTCGACCCCTTTTCATCCTGCCTATGTCACGGCTGAAAGGATCAAGAAGGCAAAAAATCTACAACTTCTGCTGACAGCTGGAATTGGATCAGATCATGTTGATCTGAAAGCTGCTGCTGCTGCTGGATTGACAGTAGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0236E02-u8qcS/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E245040" ref_strand="+" ref_description="SGN-E245040 [cLEF-13-E22]">
      <seq>ttattcttctctctgtttttagtaagtacgaaacccttttctgtaaatccaaaaaaaattccgatggcgatgaggcgtgtagcttctacagcagctcgtgctattgcttcaccttcatccttagtttttaccagagaacttcaggcttcccctggccccaaaaagattgtgggtgttttctacaaagcaaatgaatatgctgaaatgaaccccaactttttgggctgtgcagaaaatgccttggggatacgtgaatggttagagtctaaaggtcatcagtacatagtcactcctgacaaagaaggaccagattgtgagcttgagaaacacattcctgatctccatgtgttgatttcgaccccttttcatcctgcctatgtcacggctgaaaggatcaagaaggcaaaaaatctacaacttctgctgacagctggaattggatcagatcatgttgatctgaaagct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0236E02-u8qcS/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0236E02.1" temp_strand="+" temp_description="C02HBa0236E02.1  AC215430.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0236E02 sequenced_by:kribb upload_account_name:korea">
        <position start="65246" stop="68213"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="65546" g_stop="65689" g_length="144"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="144" r_length="144" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="65690" i_stop="66849" i_length="1160">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="66850" g_stop="67021" g_length="172"/>
          <reference_exon_boundary r_type="cDNA" r_start="145" r_stop="316" r_length="172" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="67022" i_stop="67764" i_length="743">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="0.987" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="67765" g_stop="67913" g_length="149"/>
          <reference_exon_boundary r_type="cDNA" r_start="317" r_stop="465" r_length="149" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0236E02.1" gen_strand="+" ref_id="SGN-E245040" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>465</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0236E02.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E245040" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="65546" e_stop="65689"/>
          <exon e_start="66850" e_stop="67021"/>
          <exon e_start="67765" e_stop="67913"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTATTCTTCTCTCTGTTTTTAGTAAGTACGAAACCCTTTTCTGTAAATCCAAAAAAAATTCCGATGGCGATGAGGCGTGTAGCTTCTACAGCAGCTCGTGCTATTGCTTCACCTTCATCCTTAGTTTTTACCAGAGAACTTCAGGTAACTAGCCATTTCTCCTCAATAGCCACTTTTTGTTGCTTTTGTTTTATATGACCTAGTTTTCGCCCTTTGATGAATTATCGGAAACCGGCACGGATCAACTCCGATTTTTCGAGAATCAAGTGAGTTGGAGATTGGAACAGAGGAAACTAAAGGAATTTAACCGTGTAAAGGAAAAAATTAAACACACTGTATTTGGTGCTCTACCCCTCGTCTCTTCTTTTTGGCTTTCCCCGTACTCTACACACCAAATGAAATGGCTCGGATATGAAAGGACTAATAACTTTTCAGTTTTCATTACTGCGTCCTTTTTTAAGCTTTCAGTTTTAATTTGCGTGAATATACCTAATTTTTATTAGGGTAGAGTTATATGTTTCAAATTAAATTGCTACCAAGTTAAATTTAAGAATGTTACATAAATTTAGAGACGGCAAGTTTATATACCAAGAAGGGTACTCCTTCATCCACAGAGAAACGGTGTCCAGTTCGAGTATGGGCGTGAATCTAGATATAGTTAATTCCAATGCAGATATCAGACATCGAGTGAGGAAAAAAAAGATTTTATTAATTTGTTATTTTTAGGTTGCTTTTCCTTTAACTGAAAATCTAACCCGGCAGGACCACAACAGTTCTTTTCCGATCATTACTAATGATACTTGATTTTCACGTGCGATTTCTGATATTTTTATACGGAGTAGGTGAAGAGTGAAATGTTTCACGGGTCTCAAGGACAATGGCAGCAGTGCTTCATTTTTTTTTGCATCTTCACGTGCTATATTATTACTTTGTTTATACTAGTTCGACTTGGAAAATCTTTTCATATTCAGTTGTCTGGGGAATAAATAAGATATTTCTTATTTTTTGATTAAAAAAAGAAGAAGATATTTCTTATTTAAAGAAGTGACAAATTGTACTAACTCATTTACCATGCCTAATATATTATATGTGACAATGATGATTTTTTTTAACTATTAATTGTTAGTTTGGACAAAAATGATCAAAGCAAGTATATTGAATAATGCTTATTTCTTGCCAACTGGTGCATCTACGAGATTATAGGAGTTGGATTATAATTTTAGCACATCCAGCATGCTTATATGACCTTAAAATATTCATGTATATTCTGTCCACTCACCTTTTATTTCTTCATTATTTTACAGGCTTCCCCTGGCCCCAAAAAGATTGTGGGTGTTTTCTACAAAGCAAATGAATATGCTGAAATGAACCCCAACTTTTTGGGCTGTGCAGAAAATGCCTTGGGGATACGTGAATGGTTAGAGTCTAAAGGTCATCAGTACATAGTCACTCCTGACAAAGAAGGACCAGATTGTGGTTAGTTCCTGCTAATCTATAATCTCTCATGTTCTATCCATTATCCCACTGAAGCCTATGCATTTCTAAAGATAATTTCTTTACCCTTCATGCTTGTACAACTAAACACATCTTAAAAGGAGTATTTTTGCATTTAAAACATGCATATATGTGCTGAAGTTTTTTAAAAATATATGGCTCACGTGAGGAGAATATAACGGTCATAGCAGGAACATTTATTTAGATAAAGAGCAAAGCAAAGTAAACAATATTTGCTTTGTTAGTGTTGGTCCTTTGCTGCTAGTGAATTATGATCAGGACATTGTGAGGTAGTTTCTTGCAGGAGGGAAAAAAAGAGTGTATTTTACCTTGATATACAGGTGTGCATTTGCAAAACGTCTATACTTCAGGACTCAGGTGTAAGTTGTACTAGTTTGATAAGACTATGGCTAAATTTTGTAATTTAAACAAGGATTTATCAAAGTCGCAGGGGCTTGTTTAGTTGTTGAGTAGAGTGCACACATGGATGCTTTAGTGATTTTCTGATGGATGACATGCTTAGTGTAAATCCTTGCTTATTAGTATCTTTTATCATGAGAAAGAATGGTGCCCTAGTCTGACACACAAACTACTCTGTGTCTTAGTTTTTCACTGTTGAATCCTTTACTATGCTCTATGCAAAGAAATTTCTCCTGAGCTAAAGTTTTTGAGTGTGTCCATCTATAATAGCTTCTTTTTTTTTTCCCATGACTTTCTCTCTGCAGAGCTTGAGAAACACATTCCTGATCTCCATGTGTTGATTTCGACCCCTTTTCATCCTGCCTATGTCACGGCTGAAAGGATCAAGAAGGCAAAAAATCTACAACTTCTGCTGACAGCTGGAATTGGATCAGATCATGTTGATCTGAAAGCT</genome_strand>
        <mrna_strand>TTATTCTTCTCTCTGTTTTTAGTAAGTACGAAACCCTTTTCTGTAAATCCAAAAAAAATTCCGATGGCGATGAGGCGTGTAGCTTCTACAGCAGCTCGTGCTATTGCTTCACCTTCATCCTTAGTTTTTACCAGAGAACTTCAG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCTTCCCCTGGCCCCAAAAAGATTGTGGGTGTTTTCTACAAAGCAAATGAATATGCTGAAATGAACCCCAACTTTTTGGGCTGTGCAGAAAATGCCTTGGGGATACGTGAATGGTTAGAGTCTAAAGGTCATCAGTACATAGTCACTCCTGACAAAGAAGGACCAGATTGTG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGCTTGAGAAACACATTCCTGATCTCCATGTGTTGATTTCGACCCCTTTTCATCCTGCCTATGTCACGGCTGAAAGGATCAAGAAGGCAAAAAATCTACAACTTCTGCTGACAGCTGGAATTGGATCAGATCATGTTGATCTGAAAGCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0236E02-u8qcS/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E240654" ref_strand="+" ref_description="SGN-E240654 [cLED-21-C1]">
      <seq>ttatttttctctctggttttagtaagtacgaaacccttttctgtaaatccaaaaaaaattccgatggcgatgaggcgtgtagcttctacagcagctcgtgctattgcttcaccttcatccttagtttttaccagagaacttcaggcttcccctggccccaaaaagattgtgggtgttttctacaaagcaaatgaatatgctgaaatgaaccccaactttttgggctgtgcagaaaatgccttggggatacgtgaatggttagagtctaaaggtcatcagtacatagtcactcctgacaaagaaggaccagattgtgagcttgagaaacacattcctgatctccatgtgttgatttcgaccccttttcatcctgcctatgtcacggctgaaaggatcaagaaggcaaaaaatctacaacttttgctgacagctggaattggatcagatcatgttgatctgaaag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0236E02-u8qcS/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0236E02.1" temp_strand="+" temp_description="C02HBa0236E02.1  AC215430.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0236E02 sequenced_by:kribb upload_account_name:korea">
        <position start="65246" stop="68211"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="65546" g_stop="65689" g_length="144"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="144" r_length="144" r_score="0.986"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="65690" i_stop="66849" i_length="1160">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="66850" g_stop="67021" g_length="172"/>
          <reference_exon_boundary r_type="cDNA" r_start="145" r_stop="316" r_length="172" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="67022" i_stop="67764" i_length="743">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="0.987" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="67765" g_stop="67911" g_length="147"/>
          <reference_exon_boundary r_type="cDNA" r_start="317" r_stop="463" r_length="147" r_score="0.993"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0236E02.1" gen_strand="+" ref_id="SGN-E240654" ref_strand="+">
        <total_alignment_score>0.994</total_alignment_score>
        <cumulative_length_of_scored_exons>463</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0236E02.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E240654" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="65546" e_stop="65689"/>
          <exon e_start="66850" e_stop="67021"/>
          <exon e_start="67765" e_stop="67911"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTATTCTTCTCTCTGTTTTTAGTAAGTACGAAACCCTTTTCTGTAAATCCAAAAAAAATTCCGATGGCGATGAGGCGTGTAGCTTCTACAGCAGCTCGTGCTATTGCTTCACCTTCATCCTTAGTTTTTACCAGAGAACTTCAGGTAACTAGCCATTTCTCCTCAATAGCCACTTTTTGTTGCTTTTGTTTTATATGACCTAGTTTTCGCCCTTTGATGAATTATCGGAAACCGGCACGGATCAACTCCGATTTTTCGAGAATCAAGTGAGTTGGAGATTGGAACAGAGGAAACTAAAGGAATTTAACCGTGTAAAGGAAAAAATTAAACACACTGTATTTGGTGCTCTACCCCTCGTCTCTTCTTTTTGGCTTTCCCCGTACTCTACACACCAAATGAAATGGCTCGGATATGAAAGGACTAATAACTTTTCAGTTTTCATTACTGCGTCCTTTTTTAAGCTTTCAGTTTTAATTTGCGTGAATATACCTAATTTTTATTAGGGTAGAGTTATATGTTTCAAATTAAATTGCTACCAAGTTAAATTTAAGAATGTTACATAAATTTAGAGACGGCAAGTTTATATACCAAGAAGGGTACTCCTTCATCCACAGAGAAACGGTGTCCAGTTCGAGTATGGGCGTGAATCTAGATATAGTTAATTCCAATGCAGATATCAGACATCGAGTGAGGAAAAAAAAGATTTTATTAATTTGTTATTTTTAGGTTGCTTTTCCTTTAACTGAAAATCTAACCCGGCAGGACCACAACAGTTCTTTTCCGATCATTACTAATGATACTTGATTTTCACGTGCGATTTCTGATATTTTTATACGGAGTAGGTGAAGAGTGAAATGTTTCACGGGTCTCAAGGACAATGGCAGCAGTGCTTCATTTTTTTTTGCATCTTCACGTGCTATATTATTACTTTGTTTATACTAGTTCGACTTGGAAAATCTTTTCATATTCAGTTGTCTGGGGAATAAATAAGATATTTCTTATTTTTTGATTAAAAAAAGAAGAAGATATTTCTTATTTAAAGAAGTGACAAATTGTACTAACTCATTTACCATGCCTAATATATTATATGTGACAATGATGATTTTTTTTAACTATTAATTGTTAGTTTGGACAAAAATGATCAAAGCAAGTATATTGAATAATGCTTATTTCTTGCCAACTGGTGCATCTACGAGATTATAGGAGTTGGATTATAATTTTAGCACATCCAGCATGCTTATATGACCTTAAAATATTCATGTATATTCTGTCCACTCACCTTTTATTTCTTCATTATTTTACAGGCTTCCCCTGGCCCCAAAAAGATTGTGGGTGTTTTCTACAAAGCAAATGAATATGCTGAAATGAACCCCAACTTTTTGGGCTGTGCAGAAAATGCCTTGGGGATACGTGAATGGTTAGAGTCTAAAGGTCATCAGTACATAGTCACTCCTGACAAAGAAGGACCAGATTGTGGTTAGTTCCTGCTAATCTATAATCTCTCATGTTCTATCCATTATCCCACTGAAGCCTATGCATTTCTAAAGATAATTTCTTTACCCTTCATGCTTGTACAACTAAACACATCTTAAAAGGAGTATTTTTGCATTTAAAACATGCATATATGTGCTGAAGTTTTTTAAAAATATATGGCTCACGTGAGGAGAATATAACGGTCATAGCAGGAACATTTATTTAGATAAAGAGCAAAGCAAAGTAAACAATATTTGCTTTGTTAGTGTTGGTCCTTTGCTGCTAGTGAATTATGATCAGGACATTGTGAGGTAGTTTCTTGCAGGAGGGAAAAAAAGAGTGTATTTTACCTTGATATACAGGTGTGCATTTGCAAAACGTCTATACTTCAGGACTCAGGTGTAAGTTGTACTAGTTTGATAAGACTATGGCTAAATTTTGTAATTTAAACAAGGATTTATCAAAGTCGCAGGGGCTTGTTTAGTTGTTGAGTAGAGTGCACACATGGATGCTTTAGTGATTTTCTGATGGATGACATGCTTAGTGTAAATCCTTGCTTATTAGTATCTTTTATCATGAGAAAGAATGGTGCCCTAGTCTGACACACAAACTACTCTGTGTCTTAGTTTTTCACTGTTGAATCCTTTACTATGCTCTATGCAAAGAAATTTCTCCTGAGCTAAAGTTTTTGAGTGTGTCCATCTATAATAGCTTCTTTTTTTTTTCCCATGACTTTCTCTCTGCAGAGCTTGAGAAACACATTCCTGATCTCCATGTGTTGATTTCGACCCCTTTTCATCCTGCCTATGTCACGGCTGAAAGGATCAAGAAGGCAAAAAATCTACAACTTCTGCTGACAGCTGGAATTGGATCAGATCATGTTGATCTGAAAG</genome_strand>
        <mrna_strand>TTATTTTTCTCTCTGGTTTTAGTAAGTACGAAACCCTTTTCTGTAAATCCAAAAAAAATTCCGATGGCGATGAGGCGTGTAGCTTCTACAGCAGCTCGTGCTATTGCTTCACCTTCATCCTTAGTTTTTACCAGAGAACTTCAG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCTTCCCCTGGCCCCAAAAAGATTGTGGGTGTTTTCTACAAAGCAAATGAATATGCTGAAATGAACCCCAACTTTTTGGGCTGTGCAGAAAATGCCTTGGGGATACGTGAATGGTTAGAGTCTAAAGGTCATCAGTACATAGTCACTCCTGACAAAGAAGGACCAGATTGTG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGCTTGAGAAACACATTCCTGATCTCCATGTGTTGATTTCGACCCCTTTTCATCCTGCCTATGTCACGGCTGAAAGGATCAAGAAGGCAAAAAATCTACAACTTTTGCTGACAGCTGGAATTGGATCAGATCATGTTGATCTGAAAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0236E02-u8qcS/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E245157" ref_strand="+" ref_description="SGN-E245157 [cLEF-13-E10]">
      <seq>ttattcttctctctgtttttagtaagtacgaaacccttttctgtaaatccaaaaaaaattccgatggcgatgaggcgtgtagcttctacagcagctcgtgctattgcttcaccttcatccttagtttttaccagagaacttcaggcttcccctggccccaaaaagattgtgggtgttttctacaaagcaaatgaatatgctgaaatgaaccccaactttttgggctgtgcagaaaatgccttggggatacgtgaatggttagagtctaaaggtcatcagtacatagtcactcctgacaaagaaggaccagattgtgagcttgagaaacacattcctgatctccatgtgttgatttcgaccccttttcatcctgcctatgtcacggctgaaaggatcaagaaggcaaaaaatctacaacttctgctgacagctggaattggatcagatcatgttgatctg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0236E02-u8qcS/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0236E02.1" temp_strand="+" temp_description="C02HBa0236E02.1  AC215430.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0236E02 sequenced_by:kribb upload_account_name:korea">
        <position start="65246" stop="68207"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="65546" g_stop="65689" g_length="144"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="144" r_length="144" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="65690" i_stop="66849" i_length="1160">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="66850" g_stop="67021" g_length="172"/>
          <reference_exon_boundary r_type="cDNA" r_start="145" r_stop="316" r_length="172" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="67022" i_stop="67764" i_length="743">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="0.987" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="67765" g_stop="67907" g_length="143"/>
          <reference_exon_boundary r_type="cDNA" r_start="317" r_stop="459" r_length="143" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0236E02.1" gen_strand="+" ref_id="SGN-E245157" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>459</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0236E02.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E245157" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="65546" e_stop="65689"/>
          <exon e_start="66850" e_stop="67021"/>
          <exon e_start="67765" e_stop="67907"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTATTCTTCTCTCTGTTTTTAGTAAGTACGAAACCCTTTTCTGTAAATCCAAAAAAAATTCCGATGGCGATGAGGCGTGTAGCTTCTACAGCAGCTCGTGCTATTGCTTCACCTTCATCCTTAGTTTTTACCAGAGAACTTCAGGTAACTAGCCATTTCTCCTCAATAGCCACTTTTTGTTGCTTTTGTTTTATATGACCTAGTTTTCGCCCTTTGATGAATTATCGGAAACCGGCACGGATCAACTCCGATTTTTCGAGAATCAAGTGAGTTGGAGATTGGAACAGAGGAAACTAAAGGAATTTAACCGTGTAAAGGAAAAAATTAAACACACTGTATTTGGTGCTCTACCCCTCGTCTCTTCTTTTTGGCTTTCCCCGTACTCTACACACCAAATGAAATGGCTCGGATATGAAAGGACTAATAACTTTTCAGTTTTCATTACTGCGTCCTTTTTTAAGCTTTCAGTTTTAATTTGCGTGAATATACCTAATTTTTATTAGGGTAGAGTTATATGTTTCAAATTAAATTGCTACCAAGTTAAATTTAAGAATGTTACATAAATTTAGAGACGGCAAGTTTATATACCAAGAAGGGTACTCCTTCATCCACAGAGAAACGGTGTCCAGTTCGAGTATGGGCGTGAATCTAGATATAGTTAATTCCAATGCAGATATCAGACATCGAGTGAGGAAAAAAAAGATTTTATTAATTTGTTATTTTTAGGTTGCTTTTCCTTTAACTGAAAATCTAACCCGGCAGGACCACAACAGTTCTTTTCCGATCATTACTAATGATACTTGATTTTCACGTGCGATTTCTGATATTTTTATACGGAGTAGGTGAAGAGTGAAATGTTTCACGGGTCTCAAGGACAATGGCAGCAGTGCTTCATTTTTTTTTGCATCTTCACGTGCTATATTATTACTTTGTTTATACTAGTTCGACTTGGAAAATCTTTTCATATTCAGTTGTCTGGGGAATAAATAAGATATTTCTTATTTTTTGATTAAAAAAAGAAGAAGATATTTCTTATTTAAAGAAGTGACAAATTGTACTAACTCATTTACCATGCCTAATATATTATATGTGACAATGATGATTTTTTTTAACTATTAATTGTTAGTTTGGACAAAAATGATCAAAGCAAGTATATTGAATAATGCTTATTTCTTGCCAACTGGTGCATCTACGAGATTATAGGAGTTGGATTATAATTTTAGCACATCCAGCATGCTTATATGACCTTAAAATATTCATGTATATTCTGTCCACTCACCTTTTATTTCTTCATTATTTTACAGGCTTCCCCTGGCCCCAAAAAGATTGTGGGTGTTTTCTACAAAGCAAATGAATATGCTGAAATGAACCCCAACTTTTTGGGCTGTGCAGAAAATGCCTTGGGGATACGTGAATGGTTAGAGTCTAAAGGTCATCAGTACATAGTCACTCCTGACAAAGAAGGACCAGATTGTGGTTAGTTCCTGCTAATCTATAATCTCTCATGTTCTATCCATTATCCCACTGAAGCCTATGCATTTCTAAAGATAATTTCTTTACCCTTCATGCTTGTACAACTAAACACATCTTAAAAGGAGTATTTTTGCATTTAAAACATGCATATATGTGCTGAAGTTTTTTAAAAATATATGGCTCACGTGAGGAGAATATAACGGTCATAGCAGGAACATTTATTTAGATAAAGAGCAAAGCAAAGTAAACAATATTTGCTTTGTTAGTGTTGGTCCTTTGCTGCTAGTGAATTATGATCAGGACATTGTGAGGTAGTTTCTTGCAGGAGGGAAAAAAAGAGTGTATTTTACCTTGATATACAGGTGTGCATTTGCAAAACGTCTATACTTCAGGACTCAGGTGTAAGTTGTACTAGTTTGATAAGACTATGGCTAAATTTTGTAATTTAAACAAGGATTTATCAAAGTCGCAGGGGCTTGTTTAGTTGTTGAGTAGAGTGCACACATGGATGCTTTAGTGATTTTCTGATGGATGACATGCTTAGTGTAAATCCTTGCTTATTAGTATCTTTTATCATGAGAAAGAATGGTGCCCTAGTCTGACACACAAACTACTCTGTGTCTTAGTTTTTCACTGTTGAATCCTTTACTATGCTCTATGCAAAGAAATTTCTCCTGAGCTAAAGTTTTTGAGTGTGTCCATCTATAATAGCTTCTTTTTTTTTTCCCATGACTTTCTCTCTGCAGAGCTTGAGAAACACATTCCTGATCTCCATGTGTTGATTTCGACCCCTTTTCATCCTGCCTATGTCACGGCTGAAAGGATCAAGAAGGCAAAAAATCTACAACTTCTGCTGACAGCTGGAATTGGATCAGATCATGTTGATCTG</genome_strand>
        <mrna_strand>TTATTCTTCTCTCTGTTTTTAGTAAGTACGAAACCCTTTTCTGTAAATCCAAAAAAAATTCCGATGGCGATGAGGCGTGTAGCTTCTACAGCAGCTCGTGCTATTGCTTCACCTTCATCCTTAGTTTTTACCAGAGAACTTCAG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCTTCCCCTGGCCCCAAAAAGATTGTGGGTGTTTTCTACAAAGCAAATGAATATGCTGAAATGAACCCCAACTTTTTGGGCTGTGCAGAAAATGCCTTGGGGATACGTGAATGGTTAGAGTCTAAAGGTCATCAGTACATAGTCACTCCTGACAAAGAAGGACCAGATTGTG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGCTTGAGAAACACATTCCTGATCTCCATGTGTTGATTTCGACCCCTTTTCATCCTGCCTATGTCACGGCTGAAAGGATCAAGAAGGCAAAAAATCTACAACTTCTGCTGACAGCTGGAATTGGATCAGATCATGTTGATCTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0236E02-u8qcS/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E275211" ref_strand="+" ref_description="SGN-E275211 [cLEN-9-G13]">
      <seq>ttattcttctctctgtttttagtaagtacgaaacccttttctgtaaatccaaaaaaaattccgatggcgatgaggcgtgtagcttctacagcagctcgtgctattgcttcaccttcatccttagtttttaccagagaacttcaggcttcccctggccccaaaaagattgtgggtgttttctacaaagcaaatgaatatgctgaaatgaaccccaactttttgggctgtgcagaaaatgccttggggatacgtgaatggttagagtctaaaggtcatcagtacatagtcactcctgacaaagaaggaccagattgtgagcttgagaaacacattcctgatctccatgtgttgatttcgaccccttttcatcctgcctatgtcacggctgaaaggatcaagaaggcaaaaaatctacaacttctgctgacagctggaattggatcagatcatgttgatctg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0236E02-u8qcS/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0236E02.1" temp_strand="+" temp_description="C02HBa0236E02.1  AC215430.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0236E02 sequenced_by:kribb upload_account_name:korea">
        <position start="65246" stop="68207"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="65546" g_stop="65689" g_length="144"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="144" r_length="144" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="65690" i_stop="66849" i_length="1160">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="66850" g_stop="67021" g_length="172"/>
          <reference_exon_boundary r_type="cDNA" r_start="145" r_stop="316" r_length="172" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="67022" i_stop="67764" i_length="743">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="0.987" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="67765" g_stop="67907" g_length="143"/>
          <reference_exon_boundary r_type="cDNA" r_start="317" r_stop="459" r_length="143" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0236E02.1" gen_strand="+" ref_id="SGN-E275211" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>459</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0236E02.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E275211" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="65546" e_stop="65689"/>
          <exon e_start="66850" e_stop="67021"/>
          <exon e_start="67765" e_stop="67907"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTATTCTTCTCTCTGTTTTTAGTAAGTACGAAACCCTTTTCTGTAAATCCAAAAAAAATTCCGATGGCGATGAGGCGTGTAGCTTCTACAGCAGCTCGTGCTATTGCTTCACCTTCATCCTTAGTTTTTACCAGAGAACTTCAGGTAACTAGCCATTTCTCCTCAATAGCCACTTTTTGTTGCTTTTGTTTTATATGACCTAGTTTTCGCCCTTTGATGAATTATCGGAAACCGGCACGGATCAACTCCGATTTTTCGAGAATCAAGTGAGTTGGAGATTGGAACAGAGGAAACTAAAGGAATTTAACCGTGTAAAGGAAAAAATTAAACACACTGTATTTGGTGCTCTACCCCTCGTCTCTTCTTTTTGGCTTTCCCCGTACTCTACACACCAAATGAAATGGCTCGGATATGAAAGGACTAATAACTTTTCAGTTTTCATTACTGCGTCCTTTTTTAAGCTTTCAGTTTTAATTTGCGTGAATATACCTAATTTTTATTAGGGTAGAGTTATATGTTTCAAATTAAATTGCTACCAAGTTAAATTTAAGAATGTTACATAAATTTAGAGACGGCAAGTTTATATACCAAGAAGGGTACTCCTTCATCCACAGAGAAACGGTGTCCAGTTCGAGTATGGGCGTGAATCTAGATATAGTTAATTCCAATGCAGATATCAGACATCGAGTGAGGAAAAAAAAGATTTTATTAATTTGTTATTTTTAGGTTGCTTTTCCTTTAACTGAAAATCTAACCCGGCAGGACCACAACAGTTCTTTTCCGATCATTACTAATGATACTTGATTTTCACGTGCGATTTCTGATATTTTTATACGGAGTAGGTGAAGAGTGAAATGTTTCACGGGTCTCAAGGACAATGGCAGCAGTGCTTCATTTTTTTTTGCATCTTCACGTGCTATATTATTACTTTGTTTATACTAGTTCGACTTGGAAAATCTTTTCATATTCAGTTGTCTGGGGAATAAATAAGATATTTCTTATTTTTTGATTAAAAAAAGAAGAAGATATTTCTTATTTAAAGAAGTGACAAATTGTACTAACTCATTTACCATGCCTAATATATTATATGTGACAATGATGATTTTTTTTAACTATTAATTGTTAGTTTGGACAAAAATGATCAAAGCAAGTATATTGAATAATGCTTATTTCTTGCCAACTGGTGCATCTACGAGATTATAGGAGTTGGATTATAATTTTAGCACATCCAGCATGCTTATATGACCTTAAAATATTCATGTATATTCTGTCCACTCACCTTTTATTTCTTCATTATTTTACAGGCTTCCCCTGGCCCCAAAAAGATTGTGGGTGTTTTCTACAAAGCAAATGAATATGCTGAAATGAACCCCAACTTTTTGGGCTGTGCAGAAAATGCCTTGGGGATACGTGAATGGTTAGAGTCTAAAGGTCATCAGTACATAGTCACTCCTGACAAAGAAGGACCAGATTGTGGTTAGTTCCTGCTAATCTATAATCTCTCATGTTCTATCCATTATCCCACTGAAGCCTATGCATTTCTAAAGATAATTTCTTTACCCTTCATGCTTGTACAACTAAACACATCTTAAAAGGAGTATTTTTGCATTTAAAACATGCATATATGTGCTGAAGTTTTTTAAAAATATATGGCTCACGTGAGGAGAATATAACGGTCATAGCAGGAACATTTATTTAGATAAAGAGCAAAGCAAAGTAAACAATATTTGCTTTGTTAGTGTTGGTCCTTTGCTGCTAGTGAATTATGATCAGGACATTGTGAGGTAGTTTCTTGCAGGAGGGAAAAAAAGAGTGTATTTTACCTTGATATACAGGTGTGCATTTGCAAAACGTCTATACTTCAGGACTCAGGTGTAAGTTGTACTAGTTTGATAAGACTATGGCTAAATTTTGTAATTTAAACAAGGATTTATCAAAGTCGCAGGGGCTTGTTTAGTTGTTGAGTAGAGTGCACACATGGATGCTTTAGTGATTTTCTGATGGATGACATGCTTAGTGTAAATCCTTGCTTATTAGTATCTTTTATCATGAGAAAGAATGGTGCCCTAGTCTGACACACAAACTACTCTGTGTCTTAGTTTTTCACTGTTGAATCCTTTACTATGCTCTATGCAAAGAAATTTCTCCTGAGCTAAAGTTTTTGAGTGTGTCCATCTATAATAGCTTCTTTTTTTTTTCCCATGACTTTCTCTCTGCAGAGCTTGAGAAACACATTCCTGATCTCCATGTGTTGATTTCGACCCCTTTTCATCCTGCCTATGTCACGGCTGAAAGGATCAAGAAGGCAAAAAATCTACAACTTCTGCTGACAGCTGGAATTGGATCAGATCATGTTGATCTG</genome_strand>
        <mrna_strand>TTATTCTTCTCTCTGTTTTTAGTAAGTACGAAACCCTTTTCTGTAAATCCAAAAAAAATTCCGATGGCGATGAGGCGTGTAGCTTCTACAGCAGCTCGTGCTATTGCTTCACCTTCATCCTTAGTTTTTACCAGAGAACTTCAG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCTTCCCCTGGCCCCAAAAAGATTGTGGGTGTTTTCTACAAAGCAAATGAATATGCTGAAATGAACCCCAACTTTTTGGGCTGTGCAGAAAATGCCTTGGGGATACGTGAATGGTTAGAGTCTAAAGGTCATCAGTACATAGTCACTCCTGACAAAGAAGGACCAGATTGTG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGCTTGAGAAACACATTCCTGATCTCCATGTGTTGATTTCGACCCCTTTTCATCCTGCCTATGTCACGGCTGAAAGGATCAAGAAGGCAAAAAATCTACAACTTCTGCTGACAGCTGGAATTGGATCAGATCATGTTGATCTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0236E02-u8qcS/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E239415" ref_strand="+" ref_description="SGN-E239415 [cLED-23-G7]">
      <seq>ttattcttctctctgtttttagtaagtacgaaacccttttctgtaaatccaaaaaaaattccgatggcgatgaggcgtgtagcttctacagcagctcgtgctattgcttcaccttcatccttagtttttaccagagaacttcaggcttcccctggccccaaaaagattgtgggtgttttctacaaagcaaatgaatatgctgaaatgaaccccaactttttgggctgtgcagaaaatgccttggggatacgtgaatggttagagtctaaaggtcatcagtacatagtcactcctgacaaagaaggaccagattgtgagcttgagaaacacattcctgatctccatgtgttgatttcgaccccttttcatcctgcctatgtcacggctgaaaggatcaagaaggcaaaaaatctacaacttctgctg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0236E02-u8qcS/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0236E02.1" temp_strand="+" temp_description="C02HBa0236E02.1  AC215430.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0236E02 sequenced_by:kribb upload_account_name:korea">
        <position start="65246" stop="68174"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="65546" g_stop="65689" g_length="144"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="144" r_length="144" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="65690" i_stop="66849" i_length="1160">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="66850" g_stop="67021" g_length="172"/>
          <reference_exon_boundary r_type="cDNA" r_start="145" r_stop="316" r_length="172" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="67022" i_stop="67764" i_length="743">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="0.987" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="67765" g_stop="67874" g_length="110"/>
          <reference_exon_boundary r_type="cDNA" r_start="317" r_stop="426" r_length="110" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0236E02.1" gen_strand="+" ref_id="SGN-E239415" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>426</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0236E02.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E239415" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="65546" e_stop="65689"/>
          <exon e_start="66850" e_stop="67021"/>
          <exon e_start="67765" e_stop="67874"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTATTCTTCTCTCTGTTTTTAGTAAGTACGAAACCCTTTTCTGTAAATCCAAAAAAAATTCCGATGGCGATGAGGCGTGTAGCTTCTACAGCAGCTCGTGCTATTGCTTCACCTTCATCCTTAGTTTTTACCAGAGAACTTCAGGTAACTAGCCATTTCTCCTCAATAGCCACTTTTTGTTGCTTTTGTTTTATATGACCTAGTTTTCGCCCTTTGATGAATTATCGGAAACCGGCACGGATCAACTCCGATTTTTCGAGAATCAAGTGAGTTGGAGATTGGAACAGAGGAAACTAAAGGAATTTAACCGTGTAAAGGAAAAAATTAAACACACTGTATTTGGTGCTCTACCCCTCGTCTCTTCTTTTTGGCTTTCCCCGTACTCTACACACCAAATGAAATGGCTCGGATATGAAAGGACTAATAACTTTTCAGTTTTCATTACTGCGTCCTTTTTTAAGCTTTCAGTTTTAATTTGCGTGAATATACCTAATTTTTATTAGGGTAGAGTTATATGTTTCAAATTAAATTGCTACCAAGTTAAATTTAAGAATGTTACATAAATTTAGAGACGGCAAGTTTATATACCAAGAAGGGTACTCCTTCATCCACAGAGAAACGGTGTCCAGTTCGAGTATGGGCGTGAATCTAGATATAGTTAATTCCAATGCAGATATCAGACATCGAGTGAGGAAAAAAAAGATTTTATTAATTTGTTATTTTTAGGTTGCTTTTCCTTTAACTGAAAATCTAACCCGGCAGGACCACAACAGTTCTTTTCCGATCATTACTAATGATACTTGATTTTCACGTGCGATTTCTGATATTTTTATACGGAGTAGGTGAAGAGTGAAATGTTTCACGGGTCTCAAGGACAATGGCAGCAGTGCTTCATTTTTTTTTGCATCTTCACGTGCTATATTATTACTTTGTTTATACTAGTTCGACTTGGAAAATCTTTTCATATTCAGTTGTCTGGGGAATAAATAAGATATTTCTTATTTTTTGATTAAAAAAAGAAGAAGATATTTCTTATTTAAAGAAGTGACAAATTGTACTAACTCATTTACCATGCCTAATATATTATATGTGACAATGATGATTTTTTTTAACTATTAATTGTTAGTTTGGACAAAAATGATCAAAGCAAGTATATTGAATAATGCTTATTTCTTGCCAACTGGTGCATCTACGAGATTATAGGAGTTGGATTATAATTTTAGCACATCCAGCATGCTTATATGACCTTAAAATATTCATGTATATTCTGTCCACTCACCTTTTATTTCTTCATTATTTTACAGGCTTCCCCTGGCCCCAAAAAGATTGTGGGTGTTTTCTACAAAGCAAATGAATATGCTGAAATGAACCCCAACTTTTTGGGCTGTGCAGAAAATGCCTTGGGGATACGTGAATGGTTAGAGTCTAAAGGTCATCAGTACATAGTCACTCCTGACAAAGAAGGACCAGATTGTGGTTAGTTCCTGCTAATCTATAATCTCTCATGTTCTATCCATTATCCCACTGAAGCCTATGCATTTCTAAAGATAATTTCTTTACCCTTCATGCTTGTACAACTAAACACATCTTAAAAGGAGTATTTTTGCATTTAAAACATGCATATATGTGCTGAAGTTTTTTAAAAATATATGGCTCACGTGAGGAGAATATAACGGTCATAGCAGGAACATTTATTTAGATAAAGAGCAAAGCAAAGTAAACAATATTTGCTTTGTTAGTGTTGGTCCTTTGCTGCTAGTGAATTATGATCAGGACATTGTGAGGTAGTTTCTTGCAGGAGGGAAAAAAAGAGTGTATTTTACCTTGATATACAGGTGTGCATTTGCAAAACGTCTATACTTCAGGACTCAGGTGTAAGTTGTACTAGTTTGATAAGACTATGGCTAAATTTTGTAATTTAAACAAGGATTTATCAAAGTCGCAGGGGCTTGTTTAGTTGTTGAGTAGAGTGCACACATGGATGCTTTAGTGATTTTCTGATGGATGACATGCTTAGTGTAAATCCTTGCTTATTAGTATCTTTTATCATGAGAAAGAATGGTGCCCTAGTCTGACACACAAACTACTCTGTGTCTTAGTTTTTCACTGTTGAATCCTTTACTATGCTCTATGCAAAGAAATTTCTCCTGAGCTAAAGTTTTTGAGTGTGTCCATCTATAATAGCTTCTTTTTTTTTTCCCATGACTTTCTCTCTGCAGAGCTTGAGAAACACATTCCTGATCTCCATGTGTTGATTTCGACCCCTTTTCATCCTGCCTATGTCACGGCTGAAAGGATCAAGAAGGCAAAAAATCTACAACTTCTGCTG</genome_strand>
        <mrna_strand>TTATTCTTCTCTCTGTTTTTAGTAAGTACGAAACCCTTTTCTGTAAATCCAAAAAAAATTCCGATGGCGATGAGGCGTGTAGCTTCTACAGCAGCTCGTGCTATTGCTTCACCTTCATCCTTAGTTTTTACCAGAGAACTTCAG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCTTCCCCTGGCCCCAAAAAGATTGTGGGTGTTTTCTACAAAGCAAATGAATATGCTGAAATGAACCCCAACTTTTTGGGCTGTGCAGAAAATGCCTTGGGGATACGTGAATGGTTAGAGTCTAAAGGTCATCAGTACATAGTCACTCCTGACAAAGAAGGACCAGATTGTG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGCTTGAGAAACACATTCCTGATCTCCATGTGTTGATTTCGACCCCTTTTCATCCTGCCTATGTCACGGCTGAAAGGATCAAGAAGGCAAAAAATCTACAACTTCTGCTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0236E02-u8qcS/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E241017" ref_strand="+" ref_description="SGN-E241017 [cLED-24-J2]">
      <seq>ttattcttctctctgtttttagtaagtacgaaacccttttctgtaaatccaaaaaaaattccgatggcgatgaggcgtgtagcttctacagcagctcgtgctattgcttcaccttcatccttagtttttaccagagaacttcaggcttcccctggccccaaaaagattgtgggtgttttctacaaagcaaatgaatatgctgaaatgaaccccaactttttgggctgtgcagaaaatgccttggggatacgtgaatggttagagtctaaaggtcatcagtacatagtcactcctgacaaagaaggaccagattgtgagcttgagaaacacattcctgatctccatgtgttgatttcgaccccttttcatcctgcctatgtcacggctgaaaggatcaagaaggcaaaaaatctacaac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0236E02-u8qcS/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0236E02.1" temp_strand="+" temp_description="C02HBa0236E02.1  AC215430.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0236E02 sequenced_by:kribb upload_account_name:korea">
        <position start="65246" stop="68166"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="65546" g_stop="65689" g_length="144"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="144" r_length="144" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="65690" i_stop="66849" i_length="1160">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="66850" g_stop="67021" g_length="172"/>
          <reference_exon_boundary r_type="cDNA" r_start="145" r_stop="316" r_length="172" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="67022" i_stop="67764" i_length="743">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="0.987" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="67765" g_stop="67866" g_length="102"/>
          <reference_exon_boundary r_type="cDNA" r_start="317" r_stop="418" r_length="102" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0236E02.1" gen_strand="+" ref_id="SGN-E241017" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>418</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0236E02.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E241017" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="65546" e_stop="65689"/>
          <exon e_start="66850" e_stop="67021"/>
          <exon e_start="67765" e_stop="67866"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTATTCTTCTCTCTGTTTTTAGTAAGTACGAAACCCTTTTCTGTAAATCCAAAAAAAATTCCGATGGCGATGAGGCGTGTAGCTTCTACAGCAGCTCGTGCTATTGCTTCACCTTCATCCTTAGTTTTTACCAGAGAACTTCAGGTAACTAGCCATTTCTCCTCAATAGCCACTTTTTGTTGCTTTTGTTTTATATGACCTAGTTTTCGCCCTTTGATGAATTATCGGAAACCGGCACGGATCAACTCCGATTTTTCGAGAATCAAGTGAGTTGGAGATTGGAACAGAGGAAACTAAAGGAATTTAACCGTGTAAAGGAAAAAATTAAACACACTGTATTTGGTGCTCTACCCCTCGTCTCTTCTTTTTGGCTTTCCCCGTACTCTACACACCAAATGAAATGGCTCGGATATGAAAGGACTAATAACTTTTCAGTTTTCATTACTGCGTCCTTTTTTAAGCTTTCAGTTTTAATTTGCGTGAATATACCTAATTTTTATTAGGGTAGAGTTATATGTTTCAAATTAAATTGCTACCAAGTTAAATTTAAGAATGTTACATAAATTTAGAGACGGCAAGTTTATATACCAAGAAGGGTACTCCTTCATCCACAGAGAAACGGTGTCCAGTTCGAGTATGGGCGTGAATCTAGATATAGTTAATTCCAATGCAGATATCAGACATCGAGTGAGGAAAAAAAAGATTTTATTAATTTGTTATTTTTAGGTTGCTTTTCCTTTAACTGAAAATCTAACCCGGCAGGACCACAACAGTTCTTTTCCGATCATTACTAATGATACTTGATTTTCACGTGCGATTTCTGATATTTTTATACGGAGTAGGTGAAGAGTGAAATGTTTCACGGGTCTCAAGGACAATGGCAGCAGTGCTTCATTTTTTTTTGCATCTTCACGTGCTATATTATTACTTTGTTTATACTAGTTCGACTTGGAAAATCTTTTCATATTCAGTTGTCTGGGGAATAAATAAGATATTTCTTATTTTTTGATTAAAAAAAGAAGAAGATATTTCTTATTTAAAGAAGTGACAAATTGTACTAACTCATTTACCATGCCTAATATATTATATGTGACAATGATGATTTTTTTTAACTATTAATTGTTAGTTTGGACAAAAATGATCAAAGCAAGTATATTGAATAATGCTTATTTCTTGCCAACTGGTGCATCTACGAGATTATAGGAGTTGGATTATAATTTTAGCACATCCAGCATGCTTATATGACCTTAAAATATTCATGTATATTCTGTCCACTCACCTTTTATTTCTTCATTATTTTACAGGCTTCCCCTGGCCCCAAAAAGATTGTGGGTGTTTTCTACAAAGCAAATGAATATGCTGAAATGAACCCCAACTTTTTGGGCTGTGCAGAAAATGCCTTGGGGATACGTGAATGGTTAGAGTCTAAAGGTCATCAGTACATAGTCACTCCTGACAAAGAAGGACCAGATTGTGGTTAGTTCCTGCTAATCTATAATCTCTCATGTTCTATCCATTATCCCACTGAAGCCTATGCATTTCTAAAGATAATTTCTTTACCCTTCATGCTTGTACAACTAAACACATCTTAAAAGGAGTATTTTTGCATTTAAAACATGCATATATGTGCTGAAGTTTTTTAAAAATATATGGCTCACGTGAGGAGAATATAACGGTCATAGCAGGAACATTTATTTAGATAAAGAGCAAAGCAAAGTAAACAATATTTGCTTTGTTAGTGTTGGTCCTTTGCTGCTAGTGAATTATGATCAGGACATTGTGAGGTAGTTTCTTGCAGGAGGGAAAAAAAGAGTGTATTTTACCTTGATATACAGGTGTGCATTTGCAAAACGTCTATACTTCAGGACTCAGGTGTAAGTTGTACTAGTTTGATAAGACTATGGCTAAATTTTGTAATTTAAACAAGGATTTATCAAAGTCGCAGGGGCTTGTTTAGTTGTTGAGTAGAGTGCACACATGGATGCTTTAGTGATTTTCTGATGGATGACATGCTTAGTGTAAATCCTTGCTTATTAGTATCTTTTATCATGAGAAAGAATGGTGCCCTAGTCTGACACACAAACTACTCTGTGTCTTAGTTTTTCACTGTTGAATCCTTTACTATGCTCTATGCAAAGAAATTTCTCCTGAGCTAAAGTTTTTGAGTGTGTCCATCTATAATAGCTTCTTTTTTTTTTCCCATGACTTTCTCTCTGCAGAGCTTGAGAAACACATTCCTGATCTCCATGTGTTGATTTCGACCCCTTTTCATCCTGCCTATGTCACGGCTGAAAGGATCAAGAAGGCAAAAAATCTACAAC</genome_strand>
        <mrna_strand>TTATTCTTCTCTCTGTTTTTAGTAAGTACGAAACCCTTTTCTGTAAATCCAAAAAAAATTCCGATGGCGATGAGGCGTGTAGCTTCTACAGCAGCTCGTGCTATTGCTTCACCTTCATCCTTAGTTTTTACCAGAGAACTTCAG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCTTCCCCTGGCCCCAAAAAGATTGTGGGTGTTTTCTACAAAGCAAATGAATATGCTGAAATGAACCCCAACTTTTTGGGCTGTGCAGAAAATGCCTTGGGGATACGTGAATGGTTAGAGTCTAAAGGTCATCAGTACATAGTCACTCCTGACAAAGAAGGACCAGATTGTG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGCTTGAGAAACACATTCCTGATCTCCATGTGTTGATTTCGACCCCTTTTCATCCTGCCTATGTCACGGCTGAAAGGATCAAGAAGGCAAAAAATCTACAAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0236E02-u8qcS/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E208770" ref_strand="+" ref_description="SGN-E208770 [cLEC-51-B19]">
      <seq>ttattcttctctctgtttttagtaagtacgaaacccttttctgtaaatccaaaaaaaattccgatggcgatgaggcgtgtagcttctacagcagctcgtgctattgcttcaccttcatccttagtttttaccagagaacttcaggcttcccctggccccaaaaagattgtgggtgttttctacaaagcaaatgaatatgctgaaatgaaccccaactttttgggctgtgcggaaaatgccttggggatacgtgaatggttagagtctaaaggtcatcagtacatagtcactcctgacaaagaaggaccagattgtgagcttgagaaacacatttcctgatctccat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0236E02-u8qcS/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0236E02.1" temp_strand="+" temp_description="C02HBa0236E02.1  AC215430.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0236E02 sequenced_by:kribb upload_account_name:korea">
        <position start="65246" stop="68093"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="65546" g_stop="65689" g_length="144"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="144" r_length="144" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="65690" i_stop="66849" i_length="1160">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="66850" g_stop="67021" g_length="172"/>
          <reference_exon_boundary r_type="cDNA" r_start="145" r_stop="316" r_length="172" r_score="0.994"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="67022" i_stop="67764" i_length="743">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="0.987" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="67765" g_stop="67793" g_length="29"/>
          <reference_exon_boundary r_type="cDNA" r_start="317" r_stop="346" r_length="30" r_score="0.931"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0236E02.1" gen_strand="+" ref_id="SGN-E208770" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>345</cumulative_length_of_scored_exons>
        <coverage percentage="0.997" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0236E02.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E208770" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="65546" e_stop="65689"/>
          <exon e_start="66850" e_stop="67021"/>
          <exon e_start="67765" e_stop="67793"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTATTCTTCTCTCTGTTTTTAGTAAGTACGAAACCCTTTTCTGTAAATCCAAAAAAAATTCCGATGGCGATGAGGCGTGTAGCTTCTACAGCAGCTCGTGCTATTGCTTCACCTTCATCCTTAGTTTTTACCAGAGAACTTCAGGTAACTAGCCATTTCTCCTCAATAGCCACTTTTTGTTGCTTTTGTTTTATATGACCTAGTTTTCGCCCTTTGATGAATTATCGGAAACCGGCACGGATCAACTCCGATTTTTCGAGAATCAAGTGAGTTGGAGATTGGAACAGAGGAAACTAAAGGAATTTAACCGTGTAAAGGAAAAAATTAAACACACTGTATTTGGTGCTCTACCCCTCGTCTCTTCTTTTTGGCTTTCCCCGTACTCTACACACCAAATGAAATGGCTCGGATATGAAAGGACTAATAACTTTTCAGTTTTCATTACTGCGTCCTTTTTTAAGCTTTCAGTTTTAATTTGCGTGAATATACCTAATTTTTATTAGGGTAGAGTTATATGTTTCAAATTAAATTGCTACCAAGTTAAATTTAAGAATGTTACATAAATTTAGAGACGGCAAGTTTATATACCAAGAAGGGTACTCCTTCATCCACAGAGAAACGGTGTCCAGTTCGAGTATGGGCGTGAATCTAGATATAGTTAATTCCAATGCAGATATCAGACATCGAGTGAGGAAAAAAAAGATTTTATTAATTTGTTATTTTTAGGTTGCTTTTCCTTTAACTGAAAATCTAACCCGGCAGGACCACAACAGTTCTTTTCCGATCATTACTAATGATACTTGATTTTCACGTGCGATTTCTGATATTTTTATACGGAGTAGGTGAAGAGTGAAATGTTTCACGGGTCTCAAGGACAATGGCAGCAGTGCTTCATTTTTTTTTGCATCTTCACGTGCTATATTATTACTTTGTTTATACTAGTTCGACTTGGAAAATCTTTTCATATTCAGTTGTCTGGGGAATAAATAAGATATTTCTTATTTTTTGATTAAAAAAAGAAGAAGATATTTCTTATTTAAAGAAGTGACAAATTGTACTAACTCATTTACCATGCCTAATATATTATATGTGACAATGATGATTTTTTTTAACTATTAATTGTTAGTTTGGACAAAAATGATCAAAGCAAGTATATTGAATAATGCTTATTTCTTGCCAACTGGTGCATCTACGAGATTATAGGAGTTGGATTATAATTTTAGCACATCCAGCATGCTTATATGACCTTAAAATATTCATGTATATTCTGTCCACTCACCTTTTATTTCTTCATTATTTTACAGGCTTCCCCTGGCCCCAAAAAGATTGTGGGTGTTTTCTACAAAGCAAATGAATATGCTGAAATGAACCCCAACTTTTTGGGCTGTGCAGAAAATGCCTTGGGGATACGTGAATGGTTAGAGTCTAAAGGTCATCAGTACATAGTCACTCCTGACAAAGAAGGACCAGATTGTGGTTAGTTCCTGCTAATCTATAATCTCTCATGTTCTATCCATTATCCCACTGAAGCCTATGCATTTCTAAAGATAATTTCTTTACCCTTCATGCTTGTACAACTAAACACATCTTAAAAGGAGTATTTTTGCATTTAAAACATGCATATATGTGCTGAAGTTTTTTAAAAATATATGGCTCACGTGAGGAGAATATAACGGTCATAGCAGGAACATTTATTTAGATAAAGAGCAAAGCAAAGTAAACAATATTTGCTTTGTTAGTGTTGGTCCTTTGCTGCTAGTGAATTATGATCAGGACATTGTGAGGTAGTTTCTTGCAGGAGGGAAAAAAAGAGTGTATTTTACCTTGATATACAGGTGTGCATTTGCAAAACGTCTATACTTCAGGACTCAGGTGTAAGTTGTACTAGTTTGATAAGACTATGGCTAAATTTTGTAATTTAAACAAGGATTTATCAAAGTCGCAGGGGCTTGTTTAGTTGTTGAGTAGAGTGCACACATGGATGCTTTAGTGATTTTCTGATGGATGACATGCTTAGTGTAAATCCTTGCTTATTAGTATCTTTTATCATGAGAAAGAATGGTGCCCTAGTCTGACACACAAACTACTCTGTGTCTTAGTTTTTCACTGTTGAATCCTTTACTATGCTCTATGCAAAGAAATTTCTCCTGAGCTAAAGTTTTTGAGTGTGTCCATCTATAATAGCTTCTTTTTTTTTTCCCATGACTTTCTCTCTGCAGAGCTTGAGAAACACA-TTCCTGATCTCCAT</genome_strand>
        <mrna_strand>TTATTCTTCTCTCTGTTTTTAGTAAGTACGAAACCCTTTTCTGTAAATCCAAAAAAAATTCCGATGGCGATGAGGCGTGTAGCTTCTACAGCAGCTCGTGCTATTGCTTCACCTTCATCCTTAGTTTTTACCAGAGAACTTCAG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCTTCCCCTGGCCCCAAAAAGATTGTGGGTGTTTTCTACAAAGCAAATGAATATGCTGAAATGAACCCCAACTTTTTGGGCTGTGCGGAAAATGCCTTGGGGATACGTGAATGGTTAGAGTCTAAAGGTCATCAGTACATAGTCACTCCTGACAAAGAAGGACCAGATTGTG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGCTTGAGAAACACATTTCCTGATCTCCAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0236E02-u8qcS/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E266244" ref_strand="+" ref_description="SGN-E266244 [cLEI-3-O6]">
      <seq>gattcttctctctgtttttagtaagtacgaaacccttttttgtaaatccaaaaaaaattccgatggcgatgaggcgtgtagcttctacagcagctcgtgctattgcttcaccttcatccttagtttttaccagagaacttcaggcttcccctggccccaaaaagattgtgggtgttttctacaaagcaaatgaatatgctgaaatgaaccccaactttttgggctgtgcagaaaatgccttggggatacgtgaatggttagagtctaaaggtcatcagtacatagtcactcctgacaaagaaagaccagattgtgagcttgagaaacacattcctgatctccatgtgttgatttcgaccccttttcatcctgcctatgtcacggctgaaaggatcaagaaggcaaaaaatctacaacttctgctgacagctggaattggatcagatcatgttgatctgaaagctgctgctgctgctggattgacagtagcagaggtcactggaagcaatactgtctcagttgcggaagatgaactgatgcgaatcttaattcttgtccgaaatttcttacctggacatca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0236E02-u8qcS/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0236E02.1" temp_strand="+" temp_description="C02HBa0236E02.1  AC215430.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0236E02 sequenced_by:kribb upload_account_name:korea">
        <position start="65248" stop="68329"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="65547" g_stop="65689" g_length="143"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="143" r_length="143" r_score="0.986"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="65690" i_stop="66849" i_length="1160">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="66850" g_stop="67021" g_length="172"/>
          <reference_exon_boundary r_type="cDNA" r_start="144" r_stop="315" r_length="172" r_score="0.994"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="67022" i_stop="67764" i_length="743">
            <donor d_prob="0.994" d_score="0.98"/>
            <acceptor a_prob="0.987" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="67765" g_stop="68029" g_length="265"/>
          <reference_exon_boundary r_type="cDNA" r_start="316" r_stop="580" r_length="265" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0236E02.1" gen_strand="+" ref_id="SGN-E266244" ref_strand="+">
        <total_alignment_score>0.995</total_alignment_score>
        <cumulative_length_of_scored_exons>580</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0236E02.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E266244" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="65547" e_stop="65689"/>
          <exon e_start="66850" e_stop="67021"/>
          <exon e_start="67765" e_stop="68029"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TATTCTTCTCTCTGTTTTTAGTAAGTACGAAACCCTTTTCTGTAAATCCAAAAAAAATTCCGATGGCGATGAGGCGTGTAGCTTCTACAGCAGCTCGTGCTATTGCTTCACCTTCATCCTTAGTTTTTACCAGAGAACTTCAGGTAACTAGCCATTTCTCCTCAATAGCCACTTTTTGTTGCTTTTGTTTTATATGACCTAGTTTTCGCCCTTTGATGAATTATCGGAAACCGGCACGGATCAACTCCGATTTTTCGAGAATCAAGTGAGTTGGAGATTGGAACAGAGGAAACTAAAGGAATTTAACCGTGTAAAGGAAAAAATTAAACACACTGTATTTGGTGCTCTACCCCTCGTCTCTTCTTTTTGGCTTTCCCCGTACTCTACACACCAAATGAAATGGCTCGGATATGAAAGGACTAATAACTTTTCAGTTTTCATTACTGCGTCCTTTTTTAAGCTTTCAGTTTTAATTTGCGTGAATATACCTAATTTTTATTAGGGTAGAGTTATATGTTTCAAATTAAATTGCTACCAAGTTAAATTTAAGAATGTTACATAAATTTAGAGACGGCAAGTTTATATACCAAGAAGGGTACTCCTTCATCCACAGAGAAACGGTGTCCAGTTCGAGTATGGGCGTGAATCTAGATATAGTTAATTCCAATGCAGATATCAGACATCGAGTGAGGAAAAAAAAGATTTTATTAATTTGTTATTTTTAGGTTGCTTTTCCTTTAACTGAAAATCTAACCCGGCAGGACCACAACAGTTCTTTTCCGATCATTACTAATGATACTTGATTTTCACGTGCGATTTCTGATATTTTTATACGGAGTAGGTGAAGAGTGAAATGTTTCACGGGTCTCAAGGACAATGGCAGCAGTGCTTCATTTTTTTTTGCATCTTCACGTGCTATATTATTACTTTGTTTATACTAGTTCGACTTGGAAAATCTTTTCATATTCAGTTGTCTGGGGAATAAATAAGATATTTCTTATTTTTTGATTAAAAAAAGAAGAAGATATTTCTTATTTAAAGAAGTGACAAATTGTACTAACTCATTTACCATGCCTAATATATTATATGTGACAATGATGATTTTTTTTAACTATTAATTGTTAGTTTGGACAAAAATGATCAAAGCAAGTATATTGAATAATGCTTATTTCTTGCCAACTGGTGCATCTACGAGATTATAGGAGTTGGATTATAATTTTAGCACATCCAGCATGCTTATATGACCTTAAAATATTCATGTATATTCTGTCCACTCACCTTTTATTTCTTCATTATTTTACAGGCTTCCCCTGGCCCCAAAAAGATTGTGGGTGTTTTCTACAAAGCAAATGAATATGCTGAAATGAACCCCAACTTTTTGGGCTGTGCAGAAAATGCCTTGGGGATACGTGAATGGTTAGAGTCTAAAGGTCATCAGTACATAGTCACTCCTGACAAAGAAGGACCAGATTGTGGTTAGTTCCTGCTAATCTATAATCTCTCATGTTCTATCCATTATCCCACTGAAGCCTATGCATTTCTAAAGATAATTTCTTTACCCTTCATGCTTGTACAACTAAACACATCTTAAAAGGAGTATTTTTGCATTTAAAACATGCATATATGTGCTGAAGTTTTTTAAAAATATATGGCTCACGTGAGGAGAATATAACGGTCATAGCAGGAACATTTATTTAGATAAAGAGCAAAGCAAAGTAAACAATATTTGCTTTGTTAGTGTTGGTCCTTTGCTGCTAGTGAATTATGATCAGGACATTGTGAGGTAGTTTCTTGCAGGAGGGAAAAAAAGAGTGTATTTTACCTTGATATACAGGTGTGCATTTGCAAAACGTCTATACTTCAGGACTCAGGTGTAAGTTGTACTAGTTTGATAAGACTATGGCTAAATTTTGTAATTTAAACAAGGATTTATCAAAGTCGCAGGGGCTTGTTTAGTTGTTGAGTAGAGTGCACACATGGATGCTTTAGTGATTTTCTGATGGATGACATGCTTAGTGTAAATCCTTGCTTATTAGTATCTTTTATCATGAGAAAGAATGGTGCCCTAGTCTGACACACAAACTACTCTGTGTCTTAGTTTTTCACTGTTGAATCCTTTACTATGCTCTATGCAAAGAAATTTCTCCTGAGCTAAAGTTTTTGAGTGTGTCCATCTATAATAGCTTCTTTTTTTTTTCCCATGACTTTCTCTCTGCAGAGCTTGAGAAACACATTCCTGATCTCCATGTGTTGATTTCGACCCCTTTTCATCCTGCCTATGTCACGGCTGAAAGGATCAAGAAGGCAAAAAATCTACAACTTCTGCTGACAGCTGGAATTGGATCAGATCATGTTGATCTGAAAGCTGCTGCTGCTGCTGGATTGACAGTAGCAGAGGTCACTGGAAGCAATACTGTCTCAGTTGCGGAAGATGAACTGATGCGAATCTTAATTCTTGTCCGAAATTTCTTACCTGGACATCA</genome_strand>
        <mrna_strand>GATTCTTCTCTCTGTTTTTAGTAAGTACGAAACCCTTTTTTGTAAATCCAAAAAAAATTCCGATGGCGATGAGGCGTGTAGCTTCTACAGCAGCTCGTGCTATTGCTTCACCTTCATCCTTAGTTTTTACCAGAGAACTTCAG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCTTCCCCTGGCCCCAAAAAGATTGTGGGTGTTTTCTACAAAGCAAATGAATATGCTGAAATGAACCCCAACTTTTTGGGCTGTGCAGAAAATGCCTTGGGGATACGTGAATGGTTAGAGTCTAAAGGTCATCAGTACATAGTCACTCCTGACAAAGAAAGACCAGATTGTG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGCTTGAGAAACACATTCCTGATCTCCATGTGTTGATTTCGACCCCTTTTCATCCTGCCTATGTCACGGCTGAAAGGATCAAGAAGGCAAAAAATCTACAACTTCTGCTGACAGCTGGAATTGGATCAGATCATGTTGATCTGAAAGCTGCTGCTGCTGCTGGATTGACAGTAGCAGAGGTCACTGGAAGCAATACTGTCTCAGTTGCGGAAGATGAACTGATGCGAATCTTAATTCTTGTCCGAAATTTCTTACCTGGACATCA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0236E02-u8qcS/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E335661" ref_strand="+" ref_description="SGN-E335661 [cTOE-8-P13]">
      <seq>tattcttctctctgtttttagtaagtacgaaacccttttctgtaaatccaaaaaaaattccgatggcagatgaggcgtgtagcttctacagcagctcgtgctattgcttcaccttcatccttagtttttaccagagaacttcaagcttcccctggccccaaaaagattgtgggtgtttactacaaagcaaatgaatatgctgaaatgaaccccaactatttgggctgtgcagaaaatgccttggggatacgtgaatggttagagtctaaaggtcatcagtacatagtcactcctgacaaagaacgaccagattgtgagcttgagaaacacattcctgatctccatgtgttgatttcgaccccttttcatcctgcctatgtcacggctgaaaggatcaagaaggcaaaaaatctacaacttctgctgacagctggaattggatcagatcatgttgatctgaaagctgctgctgctgctggattga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0236E02-u8qcS/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0236E02.1" temp_strand="+" temp_description="C02HBa0236E02.1  AC215430.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0236E02 sequenced_by:kribb upload_account_name:korea">
        <position start="65247" stop="68232"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="65547" g_stop="65689" g_length="143"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="144" r_length="144" r_score="0.979"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="65690" i_stop="66849" i_length="1160">
            <donor d_prob="1.000" d_score="0.98"/>
            <acceptor a_prob="1.000" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="66850" g_stop="67021" g_length="172"/>
          <reference_exon_boundary r_type="cDNA" r_start="145" r_stop="316" r_length="172" r_score="0.983"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="67022" i_stop="67764" i_length="743">
            <donor d_prob="0.994" d_score="0.98"/>
            <acceptor a_prob="0.987" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="67765" g_stop="67932" g_length="168"/>
          <reference_exon_boundary r_type="cDNA" r_start="317" r_stop="484" r_length="168" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0236E02.1" gen_strand="+" ref_id="SGN-E335661" ref_strand="+">
        <total_alignment_score>0.988</total_alignment_score>
        <cumulative_length_of_scored_exons>483</cumulative_length_of_scored_exons>
        <coverage percentage="0.998" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0236E02.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E335661" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="65547" e_stop="65689"/>
          <exon e_start="66850" e_stop="67021"/>
          <exon e_start="67765" e_stop="67932"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TATTCTTCTCTCTGTTTTTAGTAAGTACGAAACCCTTTTCTGTAAATCCAAAAAAAATTCCGATGGC-GATGAGGCGTGTAGCTTCTACAGCAGCTCGTGCTATTGCTTCACCTTCATCCTTAGTTTTTACCAGAGAACTTCAGGTAACTAGCCATTTCTCCTCAATAGCCACTTTTTGTTGCTTTTGTTTTATATGACCTAGTTTTCGCCCTTTGATGAATTATCGGAAACCGGCACGGATCAACTCCGATTTTTCGAGAATCAAGTGAGTTGGAGATTGGAACAGAGGAAACTAAAGGAATTTAACCGTGTAAAGGAAAAAATTAAACACACTGTATTTGGTGCTCTACCCCTCGTCTCTTCTTTTTGGCTTTCCCCGTACTCTACACACCAAATGAAATGGCTCGGATATGAAAGGACTAATAACTTTTCAGTTTTCATTACTGCGTCCTTTTTTAAGCTTTCAGTTTTAATTTGCGTGAATATACCTAATTTTTATTAGGGTAGAGTTATATGTTTCAAATTAAATTGCTACCAAGTTAAATTTAAGAATGTTACATAAATTTAGAGACGGCAAGTTTATATACCAAGAAGGGTACTCCTTCATCCACAGAGAAACGGTGTCCAGTTCGAGTATGGGCGTGAATCTAGATATAGTTAATTCCAATGCAGATATCAGACATCGAGTGAGGAAAAAAAAGATTTTATTAATTTGTTATTTTTAGGTTGCTTTTCCTTTAACTGAAAATCTAACCCGGCAGGACCACAACAGTTCTTTTCCGATCATTACTAATGATACTTGATTTTCACGTGCGATTTCTGATATTTTTATACGGAGTAGGTGAAGAGTGAAATGTTTCACGGGTCTCAAGGACAATGGCAGCAGTGCTTCATTTTTTTTTGCATCTTCACGTGCTATATTATTACTTTGTTTATACTAGTTCGACTTGGAAAATCTTTTCATATTCAGTTGTCTGGGGAATAAATAAGATATTTCTTATTTTTTGATTAAAAAAAGAAGAAGATATTTCTTATTTAAAGAAGTGACAAATTGTACTAACTCATTTACCATGCCTAATATATTATATGTGACAATGATGATTTTTTTTAACTATTAATTGTTAGTTTGGACAAAAATGATCAAAGCAAGTATATTGAATAATGCTTATTTCTTGCCAACTGGTGCATCTACGAGATTATAGGAGTTGGATTATAATTTTAGCACATCCAGCATGCTTATATGACCTTAAAATATTCATGTATATTCTGTCCACTCACCTTTTATTTCTTCATTATTTTACAGGCTTCCCCTGGCCCCAAAAAGATTGTGGGTGTTTTCTACAAAGCAAATGAATATGCTGAAATGAACCCCAACTTTTTGGGCTGTGCAGAAAATGCCTTGGGGATACGTGAATGGTTAGAGTCTAAAGGTCATCAGTACATAGTCACTCCTGACAAAGAAGGACCAGATTGTGGTTAGTTCCTGCTAATCTATAATCTCTCATGTTCTATCCATTATCCCACTGAAGCCTATGCATTTCTAAAGATAATTTCTTTACCCTTCATGCTTGTACAACTAAACACATCTTAAAAGGAGTATTTTTGCATTTAAAACATGCATATATGTGCTGAAGTTTTTTAAAAATATATGGCTCACGTGAGGAGAATATAACGGTCATAGCAGGAACATTTATTTAGATAAAGAGCAAAGCAAAGTAAACAATATTTGCTTTGTTAGTGTTGGTCCTTTGCTGCTAGTGAATTATGATCAGGACATTGTGAGGTAGTTTCTTGCAGGAGGGAAAAAAAGAGTGTATTTTACCTTGATATACAGGTGTGCATTTGCAAAACGTCTATACTTCAGGACTCAGGTGTAAGTTGTACTAGTTTGATAAGACTATGGCTAAATTTTGTAATTTAAACAAGGATTTATCAAAGTCGCAGGGGCTTGTTTAGTTGTTGAGTAGAGTGCACACATGGATGCTTTAGTGATTTTCTGATGGATGACATGCTTAGTGTAAATCCTTGCTTATTAGTATCTTTTATCATGAGAAAGAATGGTGCCCTAGTCTGACACACAAACTACTCTGTGTCTTAGTTTTTCACTGTTGAATCCTTTACTATGCTCTATGCAAAGAAATTTCTCCTGAGCTAAAGTTTTTGAGTGTGTCCATCTATAATAGCTTCTTTTTTTTTTCCCATGACTTTCTCTCTGCAGAGCTTGAGAAACACATTCCTGATCTCCATGTGTTGATTTCGACCCCTTTTCATCCTGCCTATGTCACGGCTGAAAGGATCAAGAAGGCAAAAAATCTACAACTTCTGCTGACAGCTGGAATTGGATCAGATCATGTTGATCTGAAAGCTGCTGCTGCTGCTGGATTGA</genome_strand>
        <mrna_strand>TATTCTTCTCTCTGTTTTTAGTAAGTACGAAACCCTTTTCTGTAAATCCAAAAAAAATTCCGATGGCAGATGAGGCGTGTAGCTTCTACAGCAGCTCGTGCTATTGCTTCACCTTCATCCTTAGTTTTTACCAGAGAACTTCAA........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCTTCCCCTGGCCCCAAAAAGATTGTGGGTGTTTACTACAAAGCAAATGAATATGCTGAAATGAACCCCAACTATTTGGGCTGTGCAGAAAATGCCTTGGGGATACGTGAATGGTTAGAGTCTAAAGGTCATCAGTACATAGTCACTCCTGACAAAGAACGACCAGATTGTG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGCTTGAGAAACACATTCCTGATCTCCATGTGTTGATTTCGACCCCTTTTCATCCTGCCTATGTCACGGCTGAAAGGATCAAGAAGGCAAAAAATCTACAACTTCTGCTGACAGCTGGAATTGGATCAGATCATGTTGATCTGAAAGCTGCTGCTGCTGCTGGATTGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0236E02-u8qcS/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E450830" ref_strand="+" ref_description="SGN-E450830 [cSTS-10-H15]">
      <seq>attcttctctctgtttttaccaagtacaaaaccctttgctgtaaatccaaaaaattccgatggcgatgagtcgtgtagcttctacagcagctcgtgctattacttcaccttcatccttagtttttaccagagaacttcaggcttcccctggccccaaaaagattgtgggtgttttctacaaagcaaatgaatatgctgaaatgaaccccaactttttgggctgtgcagaaaatgccttggggatacgtgaatggttagaatctaaaggtcatcagtacatagtcactcctgacaaagaaggaccggattgtgagcttgagaaacacattcctgatctccatgtgttgatttcgaccccttttcatcctgcctatgtcacggctgaaaggatcaagaaggcaaaaaatctacaactactgctgacagctggaattggatcagatcatgttgatctgaaagctgctgctgctgctggattgacagtagcagaggtcactggaagcaatactgtctcagttgcggaagatgaactgatgcgaatcttaattcttgtccgaaatttcttgcctggacatcatcaggttatcaatggggagtgggatgttgctgcaattgcgcacagagcttatgatttgga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0236E02-u8qcS/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0236E02.1" temp_strand="+" temp_description="C02HBa0236E02.1  AC215430.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0236E02 sequenced_by:kribb upload_account_name:korea">
        <position start="65248" stop="68389"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="65548" g_stop="65689" g_length="142"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="140" r_length="140" r_score="0.944"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="65690" i_stop="66849" i_length="1160">
            <donor d_prob="1.000" d_score="0.98"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="66850" g_stop="67021" g_length="172"/>
          <reference_exon_boundary r_type="cDNA" r_start="141" r_stop="312" r_length="172" r_score="0.988"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="67022" i_stop="67764" i_length="743">
            <donor d_prob="0.994" d_score="0.98"/>
            <acceptor a_prob="0.987" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="67765" g_stop="68089" g_length="325"/>
          <reference_exon_boundary r_type="cDNA" r_start="313" r_stop="637" r_length="325" r_score="0.991"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0236E02.1" gen_strand="+" ref_id="SGN-E450830" ref_strand="+">
        <total_alignment_score>0.980</total_alignment_score>
        <cumulative_length_of_scored_exons>639</cumulative_length_of_scored_exons>
        <coverage percentage="1.003" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0236E02.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E450830" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="65548" e_stop="65689"/>
          <exon e_start="66850" e_stop="67021"/>
          <exon e_start="67765" e_stop="68089"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATTCTTCTCTCTGTTTTTAGTAAGTACGAAACCCTTTTCTGTAAATCCAAAAAAAATTCCGATGGCGATGAGGCGTGTAGCTTCTACAGCAGCTCGTGCTATTGCTTCACCTTCATCCTTAGTTTTTACCAGAGAACTTCAGGTAACTAGCCATTTCTCCTCAATAGCCACTTTTTGTTGCTTTTGTTTTATATGACCTAGTTTTCGCCCTTTGATGAATTATCGGAAACCGGCACGGATCAACTCCGATTTTTCGAGAATCAAGTGAGTTGGAGATTGGAACAGAGGAAACTAAAGGAATTTAACCGTGTAAAGGAAAAAATTAAACACACTGTATTTGGTGCTCTACCCCTCGTCTCTTCTTTTTGGCTTTCCCCGTACTCTACACACCAAATGAAATGGCTCGGATATGAAAGGACTAATAACTTTTCAGTTTTCATTACTGCGTCCTTTTTTAAGCTTTCAGTTTTAATTTGCGTGAATATACCTAATTTTTATTAGGGTAGAGTTATATGTTTCAAATTAAATTGCTACCAAGTTAAATTTAAGAATGTTACATAAATTTAGAGACGGCAAGTTTATATACCAAGAAGGGTACTCCTTCATCCACAGAGAAACGGTGTCCAGTTCGAGTATGGGCGTGAATCTAGATATAGTTAATTCCAATGCAGATATCAGACATCGAGTGAGGAAAAAAAAGATTTTATTAATTTGTTATTTTTAGGTTGCTTTTCCTTTAACTGAAAATCTAACCCGGCAGGACCACAACAGTTCTTTTCCGATCATTACTAATGATACTTGATTTTCACGTGCGATTTCTGATATTTTTATACGGAGTAGGTGAAGAGTGAAATGTTTCACGGGTCTCAAGGACAATGGCAGCAGTGCTTCATTTTTTTTTGCATCTTCACGTGCTATATTATTACTTTGTTTATACTAGTTCGACTTGGAAAATCTTTTCATATTCAGTTGTCTGGGGAATAAATAAGATATTTCTTATTTTTTGATTAAAAAAAGAAGAAGATATTTCTTATTTAAAGAAGTGACAAATTGTACTAACTCATTTACCATGCCTAATATATTATATGTGACAATGATGATTTTTTTTAACTATTAATTGTTAGTTTGGACAAAAATGATCAAAGCAAGTATATTGAATAATGCTTATTTCTTGCCAACTGGTGCATCTACGAGATTATAGGAGTTGGATTATAATTTTAGCACATCCAGCATGCTTATATGACCTTAAAATATTCATGTATATTCTGTCCACTCACCTTTTATTTCTTCATTATTTTACAGGCTTCCCCTGGCCCCAAAAAGATTGTGGGTGTTTTCTACAAAGCAAATGAATATGCTGAAATGAACCCCAACTTTTTGGGCTGTGCAGAAAATGCCTTGGGGATACGTGAATGGTTAGAGTCTAAAGGTCATCAGTACATAGTCACTCCTGACAAAGAAGGACCAGATTGTGGTTAGTTCCTGCTAATCTATAATCTCTCATGTTCTATCCATTATCCCACTGAAGCCTATGCATTTCTAAAGATAATTTCTTTACCCTTCATGCTTGTACAACTAAACACATCTTAAAAGGAGTATTTTTGCATTTAAAACATGCATATATGTGCTGAAGTTTTTTAAAAATATATGGCTCACGTGAGGAGAATATAACGGTCATAGCAGGAACATTTATTTAGATAAAGAGCAAAGCAAAGTAAACAATATTTGCTTTGTTAGTGTTGGTCCTTTGCTGCTAGTGAATTATGATCAGGACATTGTGAGGTAGTTTCTTGCAGGAGGGAAAAAAAGAGTGTATTTTACCTTGATATACAGGTGTGCATTTGCAAAACGTCTATACTTCAGGACTCAGGTGTAAGTTGTACTAGTTTGATAAGACTATGGCTAAATTTTGTAATTTAAACAAGGATTTATCAAAGTCGCAGGGGCTTGTTTAGTTGTTGAGTAGAGTGCACACATGGATGCTTTAGTGATTTTCTGATGGATGACATGCTTAGTGTAAATCCTTGCTTATTAGTATCTTTTATCATGAGAAAGAATGGTGCCCTAGTCTGACACACAAACTACTCTGTGTCTTAGTTTTTCACTGTTGAATCCTTTACTATGCTCTATGCAAAGAAATTTCTCCTGAGCTAAAGTTTTTGAGTGTGTCCATCTATAATAGCTTCTTTTTTTTTTCCCATGACTTTCTCTCTGCAGAGCTTGAGAAACACATTCCTGATCTCCATGTGTTGATTTCGACCCCTTTTCATCCTGCCTATGTCACGGCTGAAAGGATCAAGAAGGCAAAAAATCTACAACTTCTGCTGACAGCTGGAATTGGATCAGATCATGTTGATCTGAAAGCTGCTGCTGCTGCTGGATTGACAGTAGCAGAGGTCACTGGAAGCAATACTGTCTCAGTTGCGGAAGATGAACTGATGCGAATCTTAATTCTTGTCCGAAATTTCTTACCTGGACATCATCAGGTTATCAATGGGGAGTGGAATGTTGCTGCAATTGCGCACAGAGCTTATGATTTGGA</genome_strand>
        <mrna_strand>ATTCTTCTCTCTGTTTTTACCAAGTACAAAACCCTTTGCTGTAAATCC--AAAAAATTCCGATGGCGATGAGTCGTGTAGCTTCTACAGCAGCTCGTGCTATTACTTCACCTTCATCCTTAGTTTTTACCAGAGAACTTCAG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCTTCCCCTGGCCCCAAAAAGATTGTGGGTGTTTTCTACAAAGCAAATGAATATGCTGAAATGAACCCCAACTTTTTGGGCTGTGCAGAAAATGCCTTGGGGATACGTGAATGGTTAGAATCTAAAGGTCATCAGTACATAGTCACTCCTGACAAAGAAGGACCGGATTGTG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGCTTGAGAAACACATTCCTGATCTCCATGTGTTGATTTCGACCCCTTTTCATCCTGCCTATGTCACGGCTGAAAGGATCAAGAAGGCAAAAAATCTACAACTACTGCTGACAGCTGGAATTGGATCAGATCATGTTGATCTGAAAGCTGCTGCTGCTGCTGGATTGACAGTAGCAGAGGTCACTGGAAGCAATACTGTCTCAGTTGCGGAAGATGAACTGATGCGAATCTTAATTCTTGTCCGAAATTTCTTGCCTGGACATCATCAGGTTATCAATGGGGAGTGGGATGTTGCTGCAATTGCGCACAGAGCTTATGATTTGGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0236E02-u8qcS/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E249792" ref_strand="+" ref_description="SGN-E249792 [cLEF-57-B18]">
      <seq>ttcttctctctgtttttagtaagtacgaaacccttttctgtaaatccaaaaaaaattccgatggcgatgaggcgtgtagcttctacagcagctcgtgctattgcttcaccttcatccttagtttttaccagagaacttcaggcttcccctggccccaaaaagattgtgggtgttttctacaaagcaaatgaatatgctgaaatgaaccccaactttttgggctgtgcagaaaatgccttggggatacgtgaatggttagagtctaaaggtcatcagtacatagtcactcctgacaaagaaggaccagattgtgagcttgagaaacacattcctgatctccatgtgttgatttcgaccccttttcatcctgcctatgtcacggctgaaaggatcaagaaggcaaaaaatctacaacttctgctgacagctggaattggatcagatcatgttgatctgaaagctgctgctgctgctggattgacagtagcagaggtcactggaagcaatactgtc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0236E02-u8qcS/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0236E02.1" temp_strand="+" temp_description="C02HBa0236E02.1  AC215430.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0236E02 sequenced_by:kribb upload_account_name:korea">
        <position start="65249" stop="68264"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="65549" g_stop="65689" g_length="141"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="141" r_length="141" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="65690" i_stop="66849" i_length="1160">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="66850" g_stop="67021" g_length="172"/>
          <reference_exon_boundary r_type="cDNA" r_start="142" r_stop="313" r_length="172" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="67022" i_stop="67764" i_length="743">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="0.987" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="67765" g_stop="67964" g_length="200"/>
          <reference_exon_boundary r_type="cDNA" r_start="314" r_stop="513" r_length="200" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0236E02.1" gen_strand="+" ref_id="SGN-E249792" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>513</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0236E02.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E249792" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="65549" e_stop="65689"/>
          <exon e_start="66850" e_stop="67021"/>
          <exon e_start="67765" e_stop="67964"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTCTTCTCTCTGTTTTTAGTAAGTACGAAACCCTTTTCTGTAAATCCAAAAAAAATTCCGATGGCGATGAGGCGTGTAGCTTCTACAGCAGCTCGTGCTATTGCTTCACCTTCATCCTTAGTTTTTACCAGAGAACTTCAGGTAACTAGCCATTTCTCCTCAATAGCCACTTTTTGTTGCTTTTGTTTTATATGACCTAGTTTTCGCCCTTTGATGAATTATCGGAAACCGGCACGGATCAACTCCGATTTTTCGAGAATCAAGTGAGTTGGAGATTGGAACAGAGGAAACTAAAGGAATTTAACCGTGTAAAGGAAAAAATTAAACACACTGTATTTGGTGCTCTACCCCTCGTCTCTTCTTTTTGGCTTTCCCCGTACTCTACACACCAAATGAAATGGCTCGGATATGAAAGGACTAATAACTTTTCAGTTTTCATTACTGCGTCCTTTTTTAAGCTTTCAGTTTTAATTTGCGTGAATATACCTAATTTTTATTAGGGTAGAGTTATATGTTTCAAATTAAATTGCTACCAAGTTAAATTTAAGAATGTTACATAAATTTAGAGACGGCAAGTTTATATACCAAGAAGGGTACTCCTTCATCCACAGAGAAACGGTGTCCAGTTCGAGTATGGGCGTGAATCTAGATATAGTTAATTCCAATGCAGATATCAGACATCGAGTGAGGAAAAAAAAGATTTTATTAATTTGTTATTTTTAGGTTGCTTTTCCTTTAACTGAAAATCTAACCCGGCAGGACCACAACAGTTCTTTTCCGATCATTACTAATGATACTTGATTTTCACGTGCGATTTCTGATATTTTTATACGGAGTAGGTGAAGAGTGAAATGTTTCACGGGTCTCAAGGACAATGGCAGCAGTGCTTCATTTTTTTTTGCATCTTCACGTGCTATATTATTACTTTGTTTATACTAGTTCGACTTGGAAAATCTTTTCATATTCAGTTGTCTGGGGAATAAATAAGATATTTCTTATTTTTTGATTAAAAAAAGAAGAAGATATTTCTTATTTAAAGAAGTGACAAATTGTACTAACTCATTTACCATGCCTAATATATTATATGTGACAATGATGATTTTTTTTAACTATTAATTGTTAGTTTGGACAAAAATGATCAAAGCAAGTATATTGAATAATGCTTATTTCTTGCCAACTGGTGCATCTACGAGATTATAGGAGTTGGATTATAATTTTAGCACATCCAGCATGCTTATATGACCTTAAAATATTCATGTATATTCTGTCCACTCACCTTTTATTTCTTCATTATTTTACAGGCTTCCCCTGGCCCCAAAAAGATTGTGGGTGTTTTCTACAAAGCAAATGAATATGCTGAAATGAACCCCAACTTTTTGGGCTGTGCAGAAAATGCCTTGGGGATACGTGAATGGTTAGAGTCTAAAGGTCATCAGTACATAGTCACTCCTGACAAAGAAGGACCAGATTGTGGTTAGTTCCTGCTAATCTATAATCTCTCATGTTCTATCCATTATCCCACTGAAGCCTATGCATTTCTAAAGATAATTTCTTTACCCTTCATGCTTGTACAACTAAACACATCTTAAAAGGAGTATTTTTGCATTTAAAACATGCATATATGTGCTGAAGTTTTTTAAAAATATATGGCTCACGTGAGGAGAATATAACGGTCATAGCAGGAACATTTATTTAGATAAAGAGCAAAGCAAAGTAAACAATATTTGCTTTGTTAGTGTTGGTCCTTTGCTGCTAGTGAATTATGATCAGGACATTGTGAGGTAGTTTCTTGCAGGAGGGAAAAAAAGAGTGTATTTTACCTTGATATACAGGTGTGCATTTGCAAAACGTCTATACTTCAGGACTCAGGTGTAAGTTGTACTAGTTTGATAAGACTATGGCTAAATTTTGTAATTTAAACAAGGATTTATCAAAGTCGCAGGGGCTTGTTTAGTTGTTGAGTAGAGTGCACACATGGATGCTTTAGTGATTTTCTGATGGATGACATGCTTAGTGTAAATCCTTGCTTATTAGTATCTTTTATCATGAGAAAGAATGGTGCCCTAGTCTGACACACAAACTACTCTGTGTCTTAGTTTTTCACTGTTGAATCCTTTACTATGCTCTATGCAAAGAAATTTCTCCTGAGCTAAAGTTTTTGAGTGTGTCCATCTATAATAGCTTCTTTTTTTTTTCCCATGACTTTCTCTCTGCAGAGCTTGAGAAACACATTCCTGATCTCCATGTGTTGATTTCGACCCCTTTTCATCCTGCCTATGTCACGGCTGAAAGGATCAAGAAGGCAAAAAATCTACAACTTCTGCTGACAGCTGGAATTGGATCAGATCATGTTGATCTGAAAGCTGCTGCTGCTGCTGGATTGACAGTAGCAGAGGTCACTGGAAGCAATACTGTC</genome_strand>
        <mrna_strand>TTCTTCTCTCTGTTTTTAGTAAGTACGAAACCCTTTTCTGTAAATCCAAAAAAAATTCCGATGGCGATGAGGCGTGTAGCTTCTACAGCAGCTCGTGCTATTGCTTCACCTTCATCCTTAGTTTTTACCAGAGAACTTCAG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCTTCCCCTGGCCCCAAAAAGATTGTGGGTGTTTTCTACAAAGCAAATGAATATGCTGAAATGAACCCCAACTTTTTGGGCTGTGCAGAAAATGCCTTGGGGATACGTGAATGGTTAGAGTCTAAAGGTCATCAGTACATAGTCACTCCTGACAAAGAAGGACCAGATTGTG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGCTTGAGAAACACATTCCTGATCTCCATGTGTTGATTTCGACCCCTTTTCATCCTGCCTATGTCACGGCTGAAAGGATCAAGAAGGCAAAAAATCTACAACTTCTGCTGACAGCTGGAATTGGATCAGATCATGTTGATCTGAAAGCTGCTGCTGCTGCTGGATTGACAGTAGCAGAGGTCACTGGAAGCAATACTGTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0236E02-u8qcS/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E470248" ref_strand="+" ref_description="SGN-E470248 [cSTB-17-O2]">
      <seq>ttcttctctctgtttttaccaagtacaaaaccctttgctgtaaatccaaaaaattccgatggcgatgagtcgtgtagcttctacagcagctcgtgctattacttcaccttcatccttagtttttaccagagaacttcaggcttcccctggccccaaaaagattgtgggtgttttctacaaagcaaatgaatatgctgaaatgaaccccaactttttgggctgtgcagaaaatgccttggggatacgtgaatggttagaatctaaaggtcatcagtacatagtcactcctgacaaagaaggaccggattgtgagcttgagaaacacattcctgatctccatgtgttgatttcgaccccttttcatcctgcctatgtcacggctgaaaggatcaagaaggcaaaaaatctacaacta</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0236E02-u8qcS/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0236E02.1" temp_strand="+" temp_description="C02HBa0236E02.1  AC215430.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0236E02 sequenced_by:kribb upload_account_name:korea">
        <position start="65249" stop="68167"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="65549" g_stop="65689" g_length="141"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="139" r_length="139" r_score="0.943"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="65690" i_stop="66849" i_length="1160">
            <donor d_prob="1.000" d_score="0.98"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="66850" g_stop="67021" g_length="172"/>
          <reference_exon_boundary r_type="cDNA" r_start="140" r_stop="311" r_length="172" r_score="0.988"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="67022" i_stop="67764" i_length="743">
            <donor d_prob="0.994" d_score="0.98"/>
            <acceptor a_prob="0.987" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="67765" g_stop="67868" g_length="104"/>
          <reference_exon_boundary r_type="cDNA" r_start="312" r_stop="415" r_length="104" r_score="0.990"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0236E02.1" gen_strand="+" ref_id="SGN-E470248" ref_strand="+">
        <total_alignment_score>0.974</total_alignment_score>
        <cumulative_length_of_scored_exons>417</cumulative_length_of_scored_exons>
        <coverage percentage="1.005" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0236E02.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E470248" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="65549" e_stop="65689"/>
          <exon e_start="66850" e_stop="67021"/>
          <exon e_start="67765" e_stop="67868"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTCTTCTCTCTGTTTTTAGTAAGTACGAAACCCTTTTCTGTAAATCCAAAAAAAATTCCGATGGCGATGAGGCGTGTAGCTTCTACAGCAGCTCGTGCTATTGCTTCACCTTCATCCTTAGTTTTTACCAGAGAACTTCAGGTAACTAGCCATTTCTCCTCAATAGCCACTTTTTGTTGCTTTTGTTTTATATGACCTAGTTTTCGCCCTTTGATGAATTATCGGAAACCGGCACGGATCAACTCCGATTTTTCGAGAATCAAGTGAGTTGGAGATTGGAACAGAGGAAACTAAAGGAATTTAACCGTGTAAAGGAAAAAATTAAACACACTGTATTTGGTGCTCTACCCCTCGTCTCTTCTTTTTGGCTTTCCCCGTACTCTACACACCAAATGAAATGGCTCGGATATGAAAGGACTAATAACTTTTCAGTTTTCATTACTGCGTCCTTTTTTAAGCTTTCAGTTTTAATTTGCGTGAATATACCTAATTTTTATTAGGGTAGAGTTATATGTTTCAAATTAAATTGCTACCAAGTTAAATTTAAGAATGTTACATAAATTTAGAGACGGCAAGTTTATATACCAAGAAGGGTACTCCTTCATCCACAGAGAAACGGTGTCCAGTTCGAGTATGGGCGTGAATCTAGATATAGTTAATTCCAATGCAGATATCAGACATCGAGTGAGGAAAAAAAAGATTTTATTAATTTGTTATTTTTAGGTTGCTTTTCCTTTAACTGAAAATCTAACCCGGCAGGACCACAACAGTTCTTTTCCGATCATTACTAATGATACTTGATTTTCACGTGCGATTTCTGATATTTTTATACGGAGTAGGTGAAGAGTGAAATGTTTCACGGGTCTCAAGGACAATGGCAGCAGTGCTTCATTTTTTTTTGCATCTTCACGTGCTATATTATTACTTTGTTTATACTAGTTCGACTTGGAAAATCTTTTCATATTCAGTTGTCTGGGGAATAAATAAGATATTTCTTATTTTTTGATTAAAAAAAGAAGAAGATATTTCTTATTTAAAGAAGTGACAAATTGTACTAACTCATTTACCATGCCTAATATATTATATGTGACAATGATGATTTTTTTTAACTATTAATTGTTAGTTTGGACAAAAATGATCAAAGCAAGTATATTGAATAATGCTTATTTCTTGCCAACTGGTGCATCTACGAGATTATAGGAGTTGGATTATAATTTTAGCACATCCAGCATGCTTATATGACCTTAAAATATTCATGTATATTCTGTCCACTCACCTTTTATTTCTTCATTATTTTACAGGCTTCCCCTGGCCCCAAAAAGATTGTGGGTGTTTTCTACAAAGCAAATGAATATGCTGAAATGAACCCCAACTTTTTGGGCTGTGCAGAAAATGCCTTGGGGATACGTGAATGGTTAGAGTCTAAAGGTCATCAGTACATAGTCACTCCTGACAAAGAAGGACCAGATTGTGGTTAGTTCCTGCTAATCTATAATCTCTCATGTTCTATCCATTATCCCACTGAAGCCTATGCATTTCTAAAGATAATTTCTTTACCCTTCATGCTTGTACAACTAAACACATCTTAAAAGGAGTATTTTTGCATTTAAAACATGCATATATGTGCTGAAGTTTTTTAAAAATATATGGCTCACGTGAGGAGAATATAACGGTCATAGCAGGAACATTTATTTAGATAAAGAGCAAAGCAAAGTAAACAATATTTGCTTTGTTAGTGTTGGTCCTTTGCTGCTAGTGAATTATGATCAGGACATTGTGAGGTAGTTTCTTGCAGGAGGGAAAAAAAGAGTGTATTTTACCTTGATATACAGGTGTGCATTTGCAAAACGTCTATACTTCAGGACTCAGGTGTAAGTTGTACTAGTTTGATAAGACTATGGCTAAATTTTGTAATTTAAACAAGGATTTATCAAAGTCGCAGGGGCTTGTTTAGTTGTTGAGTAGAGTGCACACATGGATGCTTTAGTGATTTTCTGATGGATGACATGCTTAGTGTAAATCCTTGCTTATTAGTATCTTTTATCATGAGAAAGAATGGTGCCCTAGTCTGACACACAAACTACTCTGTGTCTTAGTTTTTCACTGTTGAATCCTTTACTATGCTCTATGCAAAGAAATTTCTCCTGAGCTAAAGTTTTTGAGTGTGTCCATCTATAATAGCTTCTTTTTTTTTTCCCATGACTTTCTCTCTGCAGAGCTTGAGAAACACATTCCTGATCTCCATGTGTTGATTTCGACCCCTTTTCATCCTGCCTATGTCACGGCTGAAAGGATCAAGAAGGCAAAAAATCTACAACTT</genome_strand>
        <mrna_strand>TTCTTCTCTCTGTTTTTACCAAGTACAAAACCCTTTGCTGTAAATCC--AAAAAATTCCGATGGCGATGAGTCGTGTAGCTTCTACAGCAGCTCGTGCTATTACTTCACCTTCATCCTTAGTTTTTACCAGAGAACTTCAG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCTTCCCCTGGCCCCAAAAAGATTGTGGGTGTTTTCTACAAAGCAAATGAATATGCTGAAATGAACCCCAACTTTTTGGGCTGTGCAGAAAATGCCTTGGGGATACGTGAATGGTTAGAATCTAAAGGTCATCAGTACATAGTCACTCCTGACAAAGAAGGACCGGATTGTG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGCTTGAGAAACACATTCCTGATCTCCATGTGTTGATTTCGACCCCTTTTCATCCTGCCTATGTCACGGCTGAAAGGATCAAGAAGGCAAAAAATCTACAACTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0236E02-u8qcS/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E485098" ref_strand="+" ref_description="SGN-E485098 [cSTE-16-D21]">
      <seq>tcttctctctgtttttaccaagtacaaaaccctttgctgtaaatccaaaaaattccgatggcgatgagtcgtgtagcttctacagcagctcgtgctattacttcaccttcatccttagtttttaccagagaacttcaggcttcccctggccccaaaaagattgtgggtgttttctacaaagcaaatgaatatgctgaaatgaaccccaactttttgggctgtgcagaaaatgccttggggatacgtgaatggttagaatctaaaggtcatcagtacatagtcactcctgacaaagaaggaccggattgtgagcttgagaaacacattcctgatctccatgtgttgatttcgaccccttttcatcctgcctatgtcacggctgaaaggatcaagaaggcaaaaaatctacaactactgctgacagctggaattggatcagatcatgttgatctgaaagctgctgctgctgctggattgacagtagcagaggtcactggaagcaatactgtctcagttgcggaagatgaactgatgcgaatcttaattcttgtccgaaatttcttgcctggacatcatcaggttatcaatggggagtggaatgttgctgcaattgcgcacagagcttatgatttggaanggcagactgttggaactgttggtgcaggacgtattggcagacttttactccaacgattgaagccatttaactgtaatctactttaccatga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0236E02-u8qcS/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0236E02.1" temp_strand="+" temp_description="C02HBa0236E02.1  AC215430.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0236E02 sequenced_by:kribb upload_account_name:korea">
        <position start="65250" stop="68482"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="65550" g_stop="65689" g_length="140"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="138" r_length="138" r_score="0.943"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="65690" i_stop="66849" i_length="1160">
            <donor d_prob="1.000" d_score="0.98"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="66850" g_stop="67021" g_length="172"/>
          <reference_exon_boundary r_type="cDNA" r_start="139" r_stop="310" r_length="172" r_score="0.988"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="67022" i_stop="67764" i_length="743">
            <donor d_prob="0.994" d_score="0.98"/>
            <acceptor a_prob="0.987" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="67765" g_stop="68182" g_length="418"/>
          <reference_exon_boundary r_type="cDNA" r_start="311" r_stop="728" r_length="418" r_score="0.986"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0236E02.1" gen_strand="+" ref_id="SGN-E485098" ref_strand="+">
        <total_alignment_score>0.978</total_alignment_score>
        <cumulative_length_of_scored_exons>730</cumulative_length_of_scored_exons>
        <coverage percentage="1.003" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0236E02.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E485098" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="65550" e_stop="65689"/>
          <exon e_start="66850" e_stop="67021"/>
          <exon e_start="67765" e_stop="68182"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCTTCTCTCTGTTTTTAGTAAGTACGAAACCCTTTTCTGTAAATCCAAAAAAAATTCCGATGGCGATGAGGCGTGTAGCTTCTACAGCAGCTCGTGCTATTGCTTCACCTTCATCCTTAGTTTTTACCAGAGAACTTCAGGTAACTAGCCATTTCTCCTCAATAGCCACTTTTTGTTGCTTTTGTTTTATATGACCTAGTTTTCGCCCTTTGATGAATTATCGGAAACCGGCACGGATCAACTCCGATTTTTCGAGAATCAAGTGAGTTGGAGATTGGAACAGAGGAAACTAAAGGAATTTAACCGTGTAAAGGAAAAAATTAAACACACTGTATTTGGTGCTCTACCCCTCGTCTCTTCTTTTTGGCTTTCCCCGTACTCTACACACCAAATGAAATGGCTCGGATATGAAAGGACTAATAACTTTTCAGTTTTCATTACTGCGTCCTTTTTTAAGCTTTCAGTTTTAATTTGCGTGAATATACCTAATTTTTATTAGGGTAGAGTTATATGTTTCAAATTAAATTGCTACCAAGTTAAATTTAAGAATGTTACATAAATTTAGAGACGGCAAGTTTATATACCAAGAAGGGTACTCCTTCATCCACAGAGAAACGGTGTCCAGTTCGAGTATGGGCGTGAATCTAGATATAGTTAATTCCAATGCAGATATCAGACATCGAGTGAGGAAAAAAAAGATTTTATTAATTTGTTATTTTTAGGTTGCTTTTCCTTTAACTGAAAATCTAACCCGGCAGGACCACAACAGTTCTTTTCCGATCATTACTAATGATACTTGATTTTCACGTGCGATTTCTGATATTTTTATACGGAGTAGGTGAAGAGTGAAATGTTTCACGGGTCTCAAGGACAATGGCAGCAGTGCTTCATTTTTTTTTGCATCTTCACGTGCTATATTATTACTTTGTTTATACTAGTTCGACTTGGAAAATCTTTTCATATTCAGTTGTCTGGGGAATAAATAAGATATTTCTTATTTTTTGATTAAAAAAAGAAGAAGATATTTCTTATTTAAAGAAGTGACAAATTGTACTAACTCATTTACCATGCCTAATATATTATATGTGACAATGATGATTTTTTTTAACTATTAATTGTTAGTTTGGACAAAAATGATCAAAGCAAGTATATTGAATAATGCTTATTTCTTGCCAACTGGTGCATCTACGAGATTATAGGAGTTGGATTATAATTTTAGCACATCCAGCATGCTTATATGACCTTAAAATATTCATGTATATTCTGTCCACTCACCTTTTATTTCTTCATTATTTTACAGGCTTCCCCTGGCCCCAAAAAGATTGTGGGTGTTTTCTACAAAGCAAATGAATATGCTGAAATGAACCCCAACTTTTTGGGCTGTGCAGAAAATGCCTTGGGGATACGTGAATGGTTAGAGTCTAAAGGTCATCAGTACATAGTCACTCCTGACAAAGAAGGACCAGATTGTGGTTAGTTCCTGCTAATCTATAATCTCTCATGTTCTATCCATTATCCCACTGAAGCCTATGCATTTCTAAAGATAATTTCTTTACCCTTCATGCTTGTACAACTAAACACATCTTAAAAGGAGTATTTTTGCATTTAAAACATGCATATATGTGCTGAAGTTTTTTAAAAATATATGGCTCACGTGAGGAGAATATAACGGTCATAGCAGGAACATTTATTTAGATAAAGAGCAAAGCAAAGTAAACAATATTTGCTTTGTTAGTGTTGGTCCTTTGCTGCTAGTGAATTATGATCAGGACATTGTGAGGTAGTTTCTTGCAGGAGGGAAAAAAAGAGTGTATTTTACCTTGATATACAGGTGTGCATTTGCAAAACGTCTATACTTCAGGACTCAGGTGTAAGTTGTACTAGTTTGATAAGACTATGGCTAAATTTTGTAATTTAAACAAGGATTTATCAAAGTCGCAGGGGCTTGTTTAGTTGTTGAGTAGAGTGCACACATGGATGCTTTAGTGATTTTCTGATGGATGACATGCTTAGTGTAAATCCTTGCTTATTAGTATCTTTTATCATGAGAAAGAATGGTGCCCTAGTCTGACACACAAACTACTCTGTGTCTTAGTTTTTCACTGTTGAATCCTTTACTATGCTCTATGCAAAGAAATTTCTCCTGAGCTAAAGTTTTTGAGTGTGTCCATCTATAATAGCTTCTTTTTTTTTTCCCATGACTTTCTCTCTGCAGAGCTTGAGAAACACATTCCTGATCTCCATGTGTTGATTTCGACCCCTTTTCATCCTGCCTATGTCACGGCTGAAAGGATCAAGAAGGCAAAAAATCTACAACTTCTGCTGACAGCTGGAATTGGATCAGATCATGTTGATCTGAAAGCTGCTGCTGCTGCTGGATTGACAGTAGCAGAGGTCACTGGAAGCAATACTGTCTCAGTTGCGGAAGATGAACTGATGCGAATCTTAATTCTTGTCCGAAATTTCTTACCTGGACATCATCAGGTTATCAATGGGGAGTGGAATGTTGCTGCAATTGCGCACAGAGCTTATGATTTGGAAGGCAAGACTGTTGGAACTGTTGGTGCAGGACGTATTGGCAGACTTTTACTCCAGCGATTGAAGCCATTTAACTGTAATCTACTTTACCATGA</genome_strand>
        <mrna_strand>TCTTCTCTCTGTTTTTACCAAGTACAAAACCCTTTGCTGTAAATCC--AAAAAATTCCGATGGCGATGAGTCGTGTAGCTTCTACAGCAGCTCGTGCTATTACTTCACCTTCATCCTTAGTTTTTACCAGAGAACTTCAG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCTTCCCCTGGCCCCAAAAAGATTGTGGGTGTTTTCTACAAAGCAAATGAATATGCTGAAATGAACCCCAACTTTTTGGGCTGTGCAGAAAATGCCTTGGGGATACGTGAATGGTTAGAATCTAAAGGTCATCAGTACATAGTCACTCCTGACAAAGAAGGACCGGATTGTG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGCTTGAGAAACACATTCCTGATCTCCATGTGTTGATTTCGACCCCTTTTCATCCTGCCTATGTCACGGCTGAAAGGATCAAGAAGGCAAAAAATCTACAACTACTGCTGACAGCTGGAATTGGATCAGATCATGTTGATCTGAAAGCTGCTGCTGCTGCTGGATTGACAGTAGCAGAGGTCACTGGAAGCAATACTGTCTCAGTTGCGGAAGATGAACTGATGCGAATCTTAATTCTTGTCCGAAATTTCTTGCCTGGACATCATCAGGTTATCAATGGGGAGTGGAATGTTGCTGCAATTGCGCACAGAGCTTATGATTTGGAANGGCAGACTGTTGGAACTGTTGGTGCAGGACGTATTGGCAGACTTTTACTCCAACGATTGAAGCCATTTAACTGTAATCTACTTTACCATGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0236E02-u8qcS/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E208133" ref_strand="+" ref_description="SGN-E208133 [cLEC-34-L22]">
      <seq>tcttctctctgtttttagtaagtacgaaacccttttctgtaaatccaaaaaaaattccgatggcgatgaggcgtgtagcttctacagcagctcgtgctattgcttcaccttcatccttagtttttaccagagaacttcaggcttcccctggccccaaaaagattgtgggtgttttctacaaagcaaatgaatatgctgaaatgaaccccaactttttgggctgtgcagaaaatgccttggggatacgtgaatggttagagtctaaaggtcatcagtacatagtcactcctgacaaagaaggaccagattgtgagcttgagaaacacattcctgatctccatgtgttgatttcgaccccttttcatcctgcctatgtcacggctgaaaggatcaagaaggcaaaaaatctacaacttctgctgacagctggaattggatcagatcatgttgatctgaaagctgctgctgctgctggattgacagtagcagaggtcactggaagcaatactgtctcagttgcggaagatgaactgatgcgaatcttaattc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0236E02-u8qcS/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0236E02.1" temp_strand="+" temp_description="C02HBa0236E02.1  AC215430.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0236E02 sequenced_by:kribb upload_account_name:korea">
        <position start="65250" stop="68301"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="65550" g_stop="65689" g_length="140"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="140" r_length="140" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="65690" i_stop="66849" i_length="1160">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="66850" g_stop="67021" g_length="172"/>
          <reference_exon_boundary r_type="cDNA" r_start="141" r_stop="312" r_length="172" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="67022" i_stop="67764" i_length="743">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="0.987" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="67765" g_stop="68001" g_length="237"/>
          <reference_exon_boundary r_type="cDNA" r_start="313" r_stop="549" r_length="237" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0236E02.1" gen_strand="+" ref_id="SGN-E208133" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>549</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0236E02.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E208133" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="65550" e_stop="65689"/>
          <exon e_start="66850" e_stop="67021"/>
          <exon e_start="67765" e_stop="68001"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCTTCTCTCTGTTTTTAGTAAGTACGAAACCCTTTTCTGTAAATCCAAAAAAAATTCCGATGGCGATGAGGCGTGTAGCTTCTACAGCAGCTCGTGCTATTGCTTCACCTTCATCCTTAGTTTTTACCAGAGAACTTCAGGTAACTAGCCATTTCTCCTCAATAGCCACTTTTTGTTGCTTTTGTTTTATATGACCTAGTTTTCGCCCTTTGATGAATTATCGGAAACCGGCACGGATCAACTCCGATTTTTCGAGAATCAAGTGAGTTGGAGATTGGAACAGAGGAAACTAAAGGAATTTAACCGTGTAAAGGAAAAAATTAAACACACTGTATTTGGTGCTCTACCCCTCGTCTCTTCTTTTTGGCTTTCCCCGTACTCTACACACCAAATGAAATGGCTCGGATATGAAAGGACTAATAACTTTTCAGTTTTCATTACTGCGTCCTTTTTTAAGCTTTCAGTTTTAATTTGCGTGAATATACCTAATTTTTATTAGGGTAGAGTTATATGTTTCAAATTAAATTGCTACCAAGTTAAATTTAAGAATGTTACATAAATTTAGAGACGGCAAGTTTATATACCAAGAAGGGTACTCCTTCATCCACAGAGAAACGGTGTCCAGTTCGAGTATGGGCGTGAATCTAGATATAGTTAATTCCAATGCAGATATCAGACATCGAGTGAGGAAAAAAAAGATTTTATTAATTTGTTATTTTTAGGTTGCTTTTCCTTTAACTGAAAATCTAACCCGGCAGGACCACAACAGTTCTTTTCCGATCATTACTAATGATACTTGATTTTCACGTGCGATTTCTGATATTTTTATACGGAGTAGGTGAAGAGTGAAATGTTTCACGGGTCTCAAGGACAATGGCAGCAGTGCTTCATTTTTTTTTGCATCTTCACGTGCTATATTATTACTTTGTTTATACTAGTTCGACTTGGAAAATCTTTTCATATTCAGTTGTCTGGGGAATAAATAAGATATTTCTTATTTTTTGATTAAAAAAAGAAGAAGATATTTCTTATTTAAAGAAGTGACAAATTGTACTAACTCATTTACCATGCCTAATATATTATATGTGACAATGATGATTTTTTTTAACTATTAATTGTTAGTTTGGACAAAAATGATCAAAGCAAGTATATTGAATAATGCTTATTTCTTGCCAACTGGTGCATCTACGAGATTATAGGAGTTGGATTATAATTTTAGCACATCCAGCATGCTTATATGACCTTAAAATATTCATGTATATTCTGTCCACTCACCTTTTATTTCTTCATTATTTTACAGGCTTCCCCTGGCCCCAAAAAGATTGTGGGTGTTTTCTACAAAGCAAATGAATATGCTGAAATGAACCCCAACTTTTTGGGCTGTGCAGAAAATGCCTTGGGGATACGTGAATGGTTAGAGTCTAAAGGTCATCAGTACATAGTCACTCCTGACAAAGAAGGACCAGATTGTGGTTAGTTCCTGCTAATCTATAATCTCTCATGTTCTATCCATTATCCCACTGAAGCCTATGCATTTCTAAAGATAATTTCTTTACCCTTCATGCTTGTACAACTAAACACATCTTAAAAGGAGTATTTTTGCATTTAAAACATGCATATATGTGCTGAAGTTTTTTAAAAATATATGGCTCACGTGAGGAGAATATAACGGTCATAGCAGGAACATTTATTTAGATAAAGAGCAAAGCAAAGTAAACAATATTTGCTTTGTTAGTGTTGGTCCTTTGCTGCTAGTGAATTATGATCAGGACATTGTGAGGTAGTTTCTTGCAGGAGGGAAAAAAAGAGTGTATTTTACCTTGATATACAGGTGTGCATTTGCAAAACGTCTATACTTCAGGACTCAGGTGTAAGTTGTACTAGTTTGATAAGACTATGGCTAAATTTTGTAATTTAAACAAGGATTTATCAAAGTCGCAGGGGCTTGTTTAGTTGTTGAGTAGAGTGCACACATGGATGCTTTAGTGATTTTCTGATGGATGACATGCTTAGTGTAAATCCTTGCTTATTAGTATCTTTTATCATGAGAAAGAATGGTGCCCTAGTCTGACACACAAACTACTCTGTGTCTTAGTTTTTCACTGTTGAATCCTTTACTATGCTCTATGCAAAGAAATTTCTCCTGAGCTAAAGTTTTTGAGTGTGTCCATCTATAATAGCTTCTTTTTTTTTTCCCATGACTTTCTCTCTGCAGAGCTTGAGAAACACATTCCTGATCTCCATGTGTTGATTTCGACCCCTTTTCATCCTGCCTATGTCACGGCTGAAAGGATCAAGAAGGCAAAAAATCTACAACTTCTGCTGACAGCTGGAATTGGATCAGATCATGTTGATCTGAAAGCTGCTGCTGCTGCTGGATTGACAGTAGCAGAGGTCACTGGAAGCAATACTGTCTCAGTTGCGGAAGATGAACTGATGCGAATCTTAATTC</genome_strand>
        <mrna_strand>TCTTCTCTCTGTTTTTAGTAAGTACGAAACCCTTTTCTGTAAATCCAAAAAAAATTCCGATGGCGATGAGGCGTGTAGCTTCTACAGCAGCTCGTGCTATTGCTTCACCTTCATCCTTAGTTTTTACCAGAGAACTTCAG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCTTCCCCTGGCCCCAAAAAGATTGTGGGTGTTTTCTACAAAGCAAATGAATATGCTGAAATGAACCCCAACTTTTTGGGCTGTGCAGAAAATGCCTTGGGGATACGTGAATGGTTAGAGTCTAAAGGTCATCAGTACATAGTCACTCCTGACAAAGAAGGACCAGATTGTG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGCTTGAGAAACACATTCCTGATCTCCATGTGTTGATTTCGACCCCTTTTCATCCTGCCTATGTCACGGCTGAAAGGATCAAGAAGGCAAAAAATCTACAACTTCTGCTGACAGCTGGAATTGGATCAGATCATGTTGATCTGAAAGCTGCTGCTGCTGCTGGATTGACAGTAGCAGAGGTCACTGGAAGCAATACTGTCTCAGTTGCGGAAGATGAACTGATGCGAATCTTAATTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0236E02-u8qcS/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E252874" ref_strand="+" ref_description="SGN-E252874 [cLEG-16-J19]">
      <seq>tcttctctctgtttttagtaagtccgaaacccttttctgtaaatccaaaaaaaattccgatggcgatgaggcgtgtagcttctacagcagctcgtgctattgcttcaccttcatccttagtttttacccagagaacttcaggcttcccctgccccaaaaagatgggggtctcaaagcaaatgaatatgctgaaatgaaccccaactttttgggctgtgcagaaaatgccttggggatacgtgaatggttagagtctaaaggtcatcagtacatagtcactcctgacaaagaaggaccagattgtgagcttgagaaacacattcctgatctccatgtgttgatttcgaccccttttcatcctgcctatgtcacggctgaaaggatcaagaggcaaaaaatctacaacttctgctgacagctggaattggatcagatcatgttgatctg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0236E02-u8qcS/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0236E02.1" temp_strand="+" temp_description="C02HBa0236E02.1  AC215430.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0236E02 sequenced_by:kribb upload_account_name:korea">
        <position start="65250" stop="68207"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="65550" g_stop="65689" g_length="140"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="141" r_length="141" r_score="0.979"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="65690" i_stop="66849" i_length="1160">
            <donor d_prob="1.000" d_score="0.96"/>
            <acceptor a_prob="1.000" a_score="0.84"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="66850" g_stop="67021" g_length="172"/>
          <reference_exon_boundary r_type="cDNA" r_start="142" r_stop="305" r_length="164" r_score="0.953"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="67022" i_stop="67764" i_length="743">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="0.987" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="67765" g_stop="67907" g_length="143"/>
          <reference_exon_boundary r_type="cDNA" r_start="306" r_stop="447" r_length="142" r_score="0.993"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0236E02.1" gen_strand="+" ref_id="SGN-E252874" ref_strand="+">
        <total_alignment_score>0.974</total_alignment_score>
        <cumulative_length_of_scored_exons>455</cumulative_length_of_scored_exons>
        <coverage percentage="1.018" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0236E02.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E252874" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="65550" e_stop="65689"/>
          <exon e_start="66850" e_stop="67021"/>
          <exon e_start="67765" e_stop="67907"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCTTCTCTCTGTTTTTAGTAAGTACGAAACCCTTTTCTGTAAATCCAAAAAAAATTCCGATGGCGATGAGGCGTGTAGCTTCTACAGCAGCTCGTGCTATTGCTTCACCTTCATCCTTAGTTTTTA-CCAGAGAACTTCAGGTAACTAGCCATTTCTCCTCAATAGCCACTTTTTGTTGCTTTTGTTTTATATGACCTAGTTTTCGCCCTTTGATGAATTATCGGAAACCGGCACGGATCAACTCCGATTTTTCGAGAATCAAGTGAGTTGGAGATTGGAACAGAGGAAACTAAAGGAATTTAACCGTGTAAAGGAAAAAATTAAACACACTGTATTTGGTGCTCTACCCCTCGTCTCTTCTTTTTGGCTTTCCCCGTACTCTACACACCAAATGAAATGGCTCGGATATGAAAGGACTAATAACTTTTCAGTTTTCATTACTGCGTCCTTTTTTAAGCTTTCAGTTTTAATTTGCGTGAATATACCTAATTTTTATTAGGGTAGAGTTATATGTTTCAAATTAAATTGCTACCAAGTTAAATTTAAGAATGTTACATAAATTTAGAGACGGCAAGTTTATATACCAAGAAGGGTACTCCTTCATCCACAGAGAAACGGTGTCCAGTTCGAGTATGGGCGTGAATCTAGATATAGTTAATTCCAATGCAGATATCAGACATCGAGTGAGGAAAAAAAAGATTTTATTAATTTGTTATTTTTAGGTTGCTTTTCCTTTAACTGAAAATCTAACCCGGCAGGACCACAACAGTTCTTTTCCGATCATTACTAATGATACTTGATTTTCACGTGCGATTTCTGATATTTTTATACGGAGTAGGTGAAGAGTGAAATGTTTCACGGGTCTCAAGGACAATGGCAGCAGTGCTTCATTTTTTTTTGCATCTTCACGTGCTATATTATTACTTTGTTTATACTAGTTCGACTTGGAAAATCTTTTCATATTCAGTTGTCTGGGGAATAAATAAGATATTTCTTATTTTTTGATTAAAAAAAGAAGAAGATATTTCTTATTTAAAGAAGTGACAAATTGTACTAACTCATTTACCATGCCTAATATATTATATGTGACAATGATGATTTTTTTTAACTATTAATTGTTAGTTTGGACAAAAATGATCAAAGCAAGTATATTGAATAATGCTTATTTCTTGCCAACTGGTGCATCTACGAGATTATAGGAGTTGGATTATAATTTTAGCACATCCAGCATGCTTATATGACCTTAAAATATTCATGTATATTCTGTCCACTCACCTTTTATTTCTTCATTATTTTACAGGCTTCCCCTGGCCCCAAAAAGATTGTGGGTGTTTTCTACAAAGCAAATGAATATGCTGAAATGAACCCCAACTTTTTGGGCTGTGCAGAAAATGCCTTGGGGATACGTGAATGGTTAGAGTCTAAAGGTCATCAGTACATAGTCACTCCTGACAAAGAAGGACCAGATTGTGGTTAGTTCCTGCTAATCTATAATCTCTCATGTTCTATCCATTATCCCACTGAAGCCTATGCATTTCTAAAGATAATTTCTTTACCCTTCATGCTTGTACAACTAAACACATCTTAAAAGGAGTATTTTTGCATTTAAAACATGCATATATGTGCTGAAGTTTTTTAAAAATATATGGCTCACGTGAGGAGAATATAACGGTCATAGCAGGAACATTTATTTAGATAAAGAGCAAAGCAAAGTAAACAATATTTGCTTTGTTAGTGTTGGTCCTTTGCTGCTAGTGAATTATGATCAGGACATTGTGAGGTAGTTTCTTGCAGGAGGGAAAAAAAGAGTGTATTTTACCTTGATATACAGGTGTGCATTTGCAAAACGTCTATACTTCAGGACTCAGGTGTAAGTTGTACTAGTTTGATAAGACTATGGCTAAATTTTGTAATTTAAACAAGGATTTATCAAAGTCGCAGGGGCTTGTTTAGTTGTTGAGTAGAGTGCACACATGGATGCTTTAGTGATTTTCTGATGGATGACATGCTTAGTGTAAATCCTTGCTTATTAGTATCTTTTATCATGAGAAAGAATGGTGCCCTAGTCTGACACACAAACTACTCTGTGTCTTAGTTTTTCACTGTTGAATCCTTTACTATGCTCTATGCAAAGAAATTTCTCCTGAGCTAAAGTTTTTGAGTGTGTCCATCTATAATAGCTTCTTTTTTTTTTCCCATGACTTTCTCTCTGCAGAGCTTGAGAAACACATTCCTGATCTCCATGTGTTGATTTCGACCCCTTTTCATCCTGCCTATGTCACGGCTGAAAGGATCAAGAAGGCAAAAAATCTACAACTTCTGCTGACAGCTGGAATTGGATCAGATCATGTTGATCTG</genome_strand>
        <mrna_strand>TCTTCTCTCTGTTTTTAGTAAGTCCGAAACCCTTTTCTGTAAATCCAAAAAAAATTCCGATGGCGATGAGGCGTGTAGCTTCTACAGCAGCTCGTGCTATTGCTTCACCTTCATCCTTAGTTTTTACCCAGAGAACTTCAG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCTTCCCCT-GCCCCAAAAAGA-TG-GGG-G---TCT-CAAAGCAAATGAATATGCTGAAATGAACCCCAACTTTTTGGGCTGTGCAGAAAATGCCTTGGGGATACGTGAATGGTTAGAGTCTAAAGGTCATCAGTACATAGTCACTCCTGACAAAGAAGGACCAGATTGTG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGCTTGAGAAACACATTCCTGATCTCCATGTGTTGATTTCGACCCCTTTTCATCCTGCCTATGTCACGGCTGAAAGGATCAAG-AGGCAAAAAATCTACAACTTCTGCTGACAGCTGGAATTGGATCAGATCATGTTGATCTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0236E02-u8qcS/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E208584" ref_strand="+" ref_description="SGN-E208584 [cLEC-39-L8]">
      <seq>tcttctctctgtttttagtaagtacgaaacccttttctgtaaatccaaaaaaaattccgatggcgatgaggcgtgtagcttctacagcagctcgtgctattgcttcaccttcatccttagtttttaccagagaacttcaggcttcccctggccccaaaaagattgtgggtgttttctacaaagcaaatgaatatgctgaaatgaacccccactttttgggctgtgcagaaaatgccttggggatacgtgaatggttagagtctaaaggtcatcaggacatagtcactcctgacaaagaaggaccagattgtgagcttgagaaacacattcctgatctccatgtgtcgatttcgaccccttttcatcctgcctat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0236E02-u8qcS/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0236E02.1" temp_strand="+" temp_description="C02HBa0236E02.1  AC215430.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0236E02 sequenced_by:kribb upload_account_name:korea">
        <position start="65250" stop="68126"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="65550" g_stop="65689" g_length="140"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="140" r_length="140" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="65690" i_stop="66849" i_length="1160">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="66850" g_stop="67021" g_length="172"/>
          <reference_exon_boundary r_type="cDNA" r_start="141" r_stop="312" r_length="172" r_score="0.988"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="67022" i_stop="67764" i_length="743">
            <donor d_prob="0.994" d_score="0.98"/>
            <acceptor a_prob="0.987" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="67765" g_stop="67826" g_length="62"/>
          <reference_exon_boundary r_type="cDNA" r_start="313" r_stop="374" r_length="62" r_score="0.984"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0236E02.1" gen_strand="+" ref_id="SGN-E208584" ref_strand="+">
        <total_alignment_score>0.992</total_alignment_score>
        <cumulative_length_of_scored_exons>374</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0236E02.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E208584" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="65550" e_stop="65689"/>
          <exon e_start="66850" e_stop="67021"/>
          <exon e_start="67765" e_stop="67826"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCTTCTCTCTGTTTTTAGTAAGTACGAAACCCTTTTCTGTAAATCCAAAAAAAATTCCGATGGCGATGAGGCGTGTAGCTTCTACAGCAGCTCGTGCTATTGCTTCACCTTCATCCTTAGTTTTTACCAGAGAACTTCAGGTAACTAGCCATTTCTCCTCAATAGCCACTTTTTGTTGCTTTTGTTTTATATGACCTAGTTTTCGCCCTTTGATGAATTATCGGAAACCGGCACGGATCAACTCCGATTTTTCGAGAATCAAGTGAGTTGGAGATTGGAACAGAGGAAACTAAAGGAATTTAACCGTGTAAAGGAAAAAATTAAACACACTGTATTTGGTGCTCTACCCCTCGTCTCTTCTTTTTGGCTTTCCCCGTACTCTACACACCAAATGAAATGGCTCGGATATGAAAGGACTAATAACTTTTCAGTTTTCATTACTGCGTCCTTTTTTAAGCTTTCAGTTTTAATTTGCGTGAATATACCTAATTTTTATTAGGGTAGAGTTATATGTTTCAAATTAAATTGCTACCAAGTTAAATTTAAGAATGTTACATAAATTTAGAGACGGCAAGTTTATATACCAAGAAGGGTACTCCTTCATCCACAGAGAAACGGTGTCCAGTTCGAGTATGGGCGTGAATCTAGATATAGTTAATTCCAATGCAGATATCAGACATCGAGTGAGGAAAAAAAAGATTTTATTAATTTGTTATTTTTAGGTTGCTTTTCCTTTAACTGAAAATCTAACCCGGCAGGACCACAACAGTTCTTTTCCGATCATTACTAATGATACTTGATTTTCACGTGCGATTTCTGATATTTTTATACGGAGTAGGTGAAGAGTGAAATGTTTCACGGGTCTCAAGGACAATGGCAGCAGTGCTTCATTTTTTTTTGCATCTTCACGTGCTATATTATTACTTTGTTTATACTAGTTCGACTTGGAAAATCTTTTCATATTCAGTTGTCTGGGGAATAAATAAGATATTTCTTATTTTTTGATTAAAAAAAGAAGAAGATATTTCTTATTTAAAGAAGTGACAAATTGTACTAACTCATTTACCATGCCTAATATATTATATGTGACAATGATGATTTTTTTTAACTATTAATTGTTAGTTTGGACAAAAATGATCAAAGCAAGTATATTGAATAATGCTTATTTCTTGCCAACTGGTGCATCTACGAGATTATAGGAGTTGGATTATAATTTTAGCACATCCAGCATGCTTATATGACCTTAAAATATTCATGTATATTCTGTCCACTCACCTTTTATTTCTTCATTATTTTACAGGCTTCCCCTGGCCCCAAAAAGATTGTGGGTGTTTTCTACAAAGCAAATGAATATGCTGAAATGAACCCCAACTTTTTGGGCTGTGCAGAAAATGCCTTGGGGATACGTGAATGGTTAGAGTCTAAAGGTCATCAGTACATAGTCACTCCTGACAAAGAAGGACCAGATTGTGGTTAGTTCCTGCTAATCTATAATCTCTCATGTTCTATCCATTATCCCACTGAAGCCTATGCATTTCTAAAGATAATTTCTTTACCCTTCATGCTTGTACAACTAAACACATCTTAAAAGGAGTATTTTTGCATTTAAAACATGCATATATGTGCTGAAGTTTTTTAAAAATATATGGCTCACGTGAGGAGAATATAACGGTCATAGCAGGAACATTTATTTAGATAAAGAGCAAAGCAAAGTAAACAATATTTGCTTTGTTAGTGTTGGTCCTTTGCTGCTAGTGAATTATGATCAGGACATTGTGAGGTAGTTTCTTGCAGGAGGGAAAAAAAGAGTGTATTTTACCTTGATATACAGGTGTGCATTTGCAAAACGTCTATACTTCAGGACTCAGGTGTAAGTTGTACTAGTTTGATAAGACTATGGCTAAATTTTGTAATTTAAACAAGGATTTATCAAAGTCGCAGGGGCTTGTTTAGTTGTTGAGTAGAGTGCACACATGGATGCTTTAGTGATTTTCTGATGGATGACATGCTTAGTGTAAATCCTTGCTTATTAGTATCTTTTATCATGAGAAAGAATGGTGCCCTAGTCTGACACACAAACTACTCTGTGTCTTAGTTTTTCACTGTTGAATCCTTTACTATGCTCTATGCAAAGAAATTTCTCCTGAGCTAAAGTTTTTGAGTGTGTCCATCTATAATAGCTTCTTTTTTTTTTCCCATGACTTTCTCTCTGCAGAGCTTGAGAAACACATTCCTGATCTCCATGTGTTGATTTCGACCCCTTTTCATCCTGCCTAT</genome_strand>
        <mrna_strand>TCTTCTCTCTGTTTTTAGTAAGTACGAAACCCTTTTCTGTAAATCCAAAAAAAATTCCGATGGCGATGAGGCGTGTAGCTTCTACAGCAGCTCGTGCTATTGCTTCACCTTCATCCTTAGTTTTTACCAGAGAACTTCAG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCTTCCCCTGGCCCCAAAAAGATTGTGGGTGTTTTCTACAAAGCAAATGAATATGCTGAAATGAACCCCCACTTTTTGGGCTGTGCAGAAAATGCCTTGGGGATACGTGAATGGTTAGAGTCTAAAGGTCATCAGGACATAGTCACTCCTGACAAAGAAGGACCAGATTGTG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGCTTGAGAAACACATTCCTGATCTCCATGTGTCGATTTCGACCCCTTTTCATCCTGCCTAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0236E02-u8qcS/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E463189" ref_strand="+" ref_description="SGN-E463189 [cPRO-13-J22]">
      <seq>cttctctctgtttttaccaagtacaaaaccctttgctgtaaatccaaaaaattccgatggcgatgagtcgtgtagcttctacagcagctcgtgctattacttcaccttcatccttagtttttaccagagaacttcaggcttcccctggccccaaaaagattgtgggtgttttctacaaagcaaatgaatatgctgaaatgaaccccaactttttgggctgtgcagaaaatgccttggggatacgtgaatggttagaatctaaaggtcatcagtacatagtcactcctgacaaagaaggaccggattgtgagcttgagaaacacattcctgatctccatgtgttgatttcgaccccttttcatcctgcctatgtcacggctgaaaggatcaagaaggcaaaaaatctacaactactgctgacagctggaattggatcagatcatgttgatctgaaagctgctgctgctgctggattgacagtagcagaggtcactggaagcaatactgtctcagttgcggaagatgaactgatgcgaatcttaattcttgtccgaaatttcttgcctggacatcatcaggttatcaatgggggagtggaatgttgctgcaattgcgcacagagcttatgatttggaaggcaagactgttggaactgttggtgcaggacgtattggcagacttttactccaacgattgaagccattttactgtaatctactttaccatgaccgtcttaagatggattctgagcta</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0236E02-u8qcS/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0236E02.1" temp_strand="+" temp_description="C02HBa0236E02.1  AC215430.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0236E02 sequenced_by:kribb upload_account_name:korea">
        <position start="65251" stop="68507"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="65551" g_stop="65689" g_length="139"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="137" r_length="137" r_score="0.942"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="65690" i_stop="66849" i_length="1160">
            <donor d_prob="1.000" d_score="0.98"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="66850" g_stop="67021" g_length="172"/>
          <reference_exon_boundary r_type="cDNA" r_start="138" r_stop="309" r_length="172" r_score="0.988"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="67022" i_stop="67764" i_length="743">
            <donor d_prob="0.994" d_score="0.98"/>
            <acceptor a_prob="0.987" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="67765" g_stop="68207" g_length="443"/>
          <reference_exon_boundary r_type="cDNA" r_start="310" r_stop="753" r_length="444" r_score="0.986"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0236E02.1" gen_strand="+" ref_id="SGN-E463189" ref_strand="+">
        <total_alignment_score>0.979</total_alignment_score>
        <cumulative_length_of_scored_exons>754</cumulative_length_of_scored_exons>
        <coverage percentage="1.001" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0236E02.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E463189" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="65551" e_stop="65689"/>
          <exon e_start="66850" e_stop="67021"/>
          <exon e_start="67765" e_stop="68207"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTTCTCTCTGTTTTTAGTAAGTACGAAACCCTTTTCTGTAAATCCAAAAAAAATTCCGATGGCGATGAGGCGTGTAGCTTCTACAGCAGCTCGTGCTATTGCTTCACCTTCATCCTTAGTTTTTACCAGAGAACTTCAGGTAACTAGCCATTTCTCCTCAATAGCCACTTTTTGTTGCTTTTGTTTTATATGACCTAGTTTTCGCCCTTTGATGAATTATCGGAAACCGGCACGGATCAACTCCGATTTTTCGAGAATCAAGTGAGTTGGAGATTGGAACAGAGGAAACTAAAGGAATTTAACCGTGTAAAGGAAAAAATTAAACACACTGTATTTGGTGCTCTACCCCTCGTCTCTTCTTTTTGGCTTTCCCCGTACTCTACACACCAAATGAAATGGCTCGGATATGAAAGGACTAATAACTTTTCAGTTTTCATTACTGCGTCCTTTTTTAAGCTTTCAGTTTTAATTTGCGTGAATATACCTAATTTTTATTAGGGTAGAGTTATATGTTTCAAATTAAATTGCTACCAAGTTAAATTTAAGAATGTTACATAAATTTAGAGACGGCAAGTTTATATACCAAGAAGGGTACTCCTTCATCCACAGAGAAACGGTGTCCAGTTCGAGTATGGGCGTGAATCTAGATATAGTTAATTCCAATGCAGATATCAGACATCGAGTGAGGAAAAAAAAGATTTTATTAATTTGTTATTTTTAGGTTGCTTTTCCTTTAACTGAAAATCTAACCCGGCAGGACCACAACAGTTCTTTTCCGATCATTACTAATGATACTTGATTTTCACGTGCGATTTCTGATATTTTTATACGGAGTAGGTGAAGAGTGAAATGTTTCACGGGTCTCAAGGACAATGGCAGCAGTGCTTCATTTTTTTTTGCATCTTCACGTGCTATATTATTACTTTGTTTATACTAGTTCGACTTGGAAAATCTTTTCATATTCAGTTGTCTGGGGAATAAATAAGATATTTCTTATTTTTTGATTAAAAAAAGAAGAAGATATTTCTTATTTAAAGAAGTGACAAATTGTACTAACTCATTTACCATGCCTAATATATTATATGTGACAATGATGATTTTTTTTAACTATTAATTGTTAGTTTGGACAAAAATGATCAAAGCAAGTATATTGAATAATGCTTATTTCTTGCCAACTGGTGCATCTACGAGATTATAGGAGTTGGATTATAATTTTAGCACATCCAGCATGCTTATATGACCTTAAAATATTCATGTATATTCTGTCCACTCACCTTTTATTTCTTCATTATTTTACAGGCTTCCCCTGGCCCCAAAAAGATTGTGGGTGTTTTCTACAAAGCAAATGAATATGCTGAAATGAACCCCAACTTTTTGGGCTGTGCAGAAAATGCCTTGGGGATACGTGAATGGTTAGAGTCTAAAGGTCATCAGTACATAGTCACTCCTGACAAAGAAGGACCAGATTGTGGTTAGTTCCTGCTAATCTATAATCTCTCATGTTCTATCCATTATCCCACTGAAGCCTATGCATTTCTAAAGATAATTTCTTTACCCTTCATGCTTGTACAACTAAACACATCTTAAAAGGAGTATTTTTGCATTTAAAACATGCATATATGTGCTGAAGTTTTTTAAAAATATATGGCTCACGTGAGGAGAATATAACGGTCATAGCAGGAACATTTATTTAGATAAAGAGCAAAGCAAAGTAAACAATATTTGCTTTGTTAGTGTTGGTCCTTTGCTGCTAGTGAATTATGATCAGGACATTGTGAGGTAGTTTCTTGCAGGAGGGAAAAAAAGAGTGTATTTTACCTTGATATACAGGTGTGCATTTGCAAAACGTCTATACTTCAGGACTCAGGTGTAAGTTGTACTAGTTTGATAAGACTATGGCTAAATTTTGTAATTTAAACAAGGATTTATCAAAGTCGCAGGGGCTTGTTTAGTTGTTGAGTAGAGTGCACACATGGATGCTTTAGTGATTTTCTGATGGATGACATGCTTAGTGTAAATCCTTGCTTATTAGTATCTTTTATCATGAGAAAGAATGGTGCCCTAGTCTGACACACAAACTACTCTGTGTCTTAGTTTTTCACTGTTGAATCCTTTACTATGCTCTATGCAAAGAAATTTCTCCTGAGCTAAAGTTTTTGAGTGTGTCCATCTATAATAGCTTCTTTTTTTTTTCCCATGACTTTCTCTCTGCAGAGCTTGAGAAACACATTCCTGATCTCCATGTGTTGATTTCGACCCCTTTTCATCCTGCCTATGTCACGGCTGAAAGGATCAAGAAGGCAAAAAATCTACAACTTCTGCTGACAGCTGGAATTGGATCAGATCATGTTGATCTGAAAGCTGCTGCTGCTGCTGGATTGACAGTAGCAGAGGTCACTGGAAGCAATACTGTCTCAGTTGCGGAAGATGAACTGATGCGAATCTTAATTCTTGTCCGAAATTTCTTACCTGGACATCATCAGGTTATCAAT-GGGGAGTGGAATGTTGCTGCAATTGCGCACAGAGCTTATGATTTGGAAGGCAAGACTGTTGGAACTGTTGGTGCAGGACGTATTGGCAGACTTTTACTCCAGCGATTGAAGCCATTTAACTGTAATCTACTTTACCATGACCGTCTTAAGATGGATTCTGAGCTA</genome_strand>
        <mrna_strand>CTTCTCTCTGTTTTTACCAAGTACAAAACCCTTTGCTGTAAATCC--AAAAAATTCCGATGGCGATGAGTCGTGTAGCTTCTACAGCAGCTCGTGCTATTACTTCACCTTCATCCTTAGTTTTTACCAGAGAACTTCAG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCTTCCCCTGGCCCCAAAAAGATTGTGGGTGTTTTCTACAAAGCAAATGAATATGCTGAAATGAACCCCAACTTTTTGGGCTGTGCAGAAAATGCCTTGGGGATACGTGAATGGTTAGAATCTAAAGGTCATCAGTACATAGTCACTCCTGACAAAGAAGGACCGGATTGTG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGCTTGAGAAACACATTCCTGATCTCCATGTGTTGATTTCGACCCCTTTTCATCCTGCCTATGTCACGGCTGAAAGGATCAAGAAGGCAAAAAATCTACAACTACTGCTGACAGCTGGAATTGGATCAGATCATGTTGATCTGAAAGCTGCTGCTGCTGCTGGATTGACAGTAGCAGAGGTCACTGGAAGCAATACTGTCTCAGTTGCGGAAGATGAACTGATGCGAATCTTAATTCTTGTCCGAAATTTCTTGCCTGGACATCATCAGGTTATCAATGGGGGAGTGGAATGTTGCTGCAATTGCGCACAGAGCTTATGATTTGGAAGGCAAGACTGTTGGAACTGTTGGTGCAGGACGTATTGGCAGACTTTTACTCCAACGATTGAAGCCATTTTACTGTAATCTACTTTACCATGACCGTCTTAAGATGGATTCTGAGCTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0236E02-u8qcS/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E455847" ref_strand="+" ref_description="SGN-E455847 [cSTS-27-D10]">
      <seq>cttctctctgtttttagcaaagtacaaaaccctttgctgtaaatccaaaaaattccgatggcgatgagtcgtgtagcttctacagcagctcgtgctattacttcaccttcatccttagtttttaccagagaacttcaggcttcccctggccccaaaaagattgtgggtgttttctacaaagcaaatgaatatgctgaaatgaaccccaactttttgggctgtgcagaaaatgccttggggatacgtgaatggttagaatctaaaggtcatcagtacatagtcactcctgacaaagaaggaccagattgtgagcttgagaaacacattcctgatctccatgtgttgatttcgaccccttttcatcctgcctatgtcacggctgaaaggatcaagaaggcaaaaaatctacaactactgctgacagctggaattggatcagatcatgttgatctgaaagctgctgctgctgctggattgacagtggcagaagtcactggaagcaatactgtctcagttgcggaagatgaactgatgcgaatcttaattcttgtccgaaatttcttgcctggacatcatcaggttatcaatggggagtggaatgttgctgcaattgcgcacagagcttatgatttggaaggcaagactgttggaactgttggtgcangacgtattggcagacttttactccaacgattgaagccatttaactgtaatctacttt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0236E02-u8qcS/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0236E02.1" temp_strand="+" temp_description="C02HBa0236E02.1  AC215430.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0236E02 sequenced_by:kribb upload_account_name:korea">
        <position start="65251" stop="68475"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="65551" g_stop="65689" g_length="139"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="138" r_length="138" r_score="0.935"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="65690" i_stop="66849" i_length="1160">
            <donor d_prob="1.000" d_score="0.98"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="66850" g_stop="67021" g_length="172"/>
          <reference_exon_boundary r_type="cDNA" r_start="139" r_stop="310" r_length="172" r_score="0.994"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="67022" i_stop="67764" i_length="743">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="0.987" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="67765" g_stop="68175" g_length="411"/>
          <reference_exon_boundary r_type="cDNA" r_start="311" r_stop="721" r_length="411" r_score="0.985"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0236E02.1" gen_strand="+" ref_id="SGN-E455847" ref_strand="+">
        <total_alignment_score>0.978</total_alignment_score>
        <cumulative_length_of_scored_exons>722</cumulative_length_of_scored_exons>
        <coverage percentage="1.001" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0236E02.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E455847" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="65551" e_stop="65689"/>
          <exon e_start="66850" e_stop="67021"/>
          <exon e_start="67765" e_stop="68175"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTTCTCTCTGTTTTTAG-TAAGTACGAAACCCTTTTCTGTAAATCCAAAAAAAATTCCGATGGCGATGAGGCGTGTAGCTTCTACAGCAGCTCGTGCTATTGCTTCACCTTCATCCTTAGTTTTTACCAGAGAACTTCAGGTAACTAGCCATTTCTCCTCAATAGCCACTTTTTGTTGCTTTTGTTTTATATGACCTAGTTTTCGCCCTTTGATGAATTATCGGAAACCGGCACGGATCAACTCCGATTTTTCGAGAATCAAGTGAGTTGGAGATTGGAACAGAGGAAACTAAAGGAATTTAACCGTGTAAAGGAAAAAATTAAACACACTGTATTTGGTGCTCTACCCCTCGTCTCTTCTTTTTGGCTTTCCCCGTACTCTACACACCAAATGAAATGGCTCGGATATGAAAGGACTAATAACTTTTCAGTTTTCATTACTGCGTCCTTTTTTAAGCTTTCAGTTTTAATTTGCGTGAATATACCTAATTTTTATTAGGGTAGAGTTATATGTTTCAAATTAAATTGCTACCAAGTTAAATTTAAGAATGTTACATAAATTTAGAGACGGCAAGTTTATATACCAAGAAGGGTACTCCTTCATCCACAGAGAAACGGTGTCCAGTTCGAGTATGGGCGTGAATCTAGATATAGTTAATTCCAATGCAGATATCAGACATCGAGTGAGGAAAAAAAAGATTTTATTAATTTGTTATTTTTAGGTTGCTTTTCCTTTAACTGAAAATCTAACCCGGCAGGACCACAACAGTTCTTTTCCGATCATTACTAATGATACTTGATTTTCACGTGCGATTTCTGATATTTTTATACGGAGTAGGTGAAGAGTGAAATGTTTCACGGGTCTCAAGGACAATGGCAGCAGTGCTTCATTTTTTTTTGCATCTTCACGTGCTATATTATTACTTTGTTTATACTAGTTCGACTTGGAAAATCTTTTCATATTCAGTTGTCTGGGGAATAAATAAGATATTTCTTATTTTTTGATTAAAAAAAGAAGAAGATATTTCTTATTTAAAGAAGTGACAAATTGTACTAACTCATTTACCATGCCTAATATATTATATGTGACAATGATGATTTTTTTTAACTATTAATTGTTAGTTTGGACAAAAATGATCAAAGCAAGTATATTGAATAATGCTTATTTCTTGCCAACTGGTGCATCTACGAGATTATAGGAGTTGGATTATAATTTTAGCACATCCAGCATGCTTATATGACCTTAAAATATTCATGTATATTCTGTCCACTCACCTTTTATTTCTTCATTATTTTACAGGCTTCCCCTGGCCCCAAAAAGATTGTGGGTGTTTTCTACAAAGCAAATGAATATGCTGAAATGAACCCCAACTTTTTGGGCTGTGCAGAAAATGCCTTGGGGATACGTGAATGGTTAGAGTCTAAAGGTCATCAGTACATAGTCACTCCTGACAAAGAAGGACCAGATTGTGGTTAGTTCCTGCTAATCTATAATCTCTCATGTTCTATCCATTATCCCACTGAAGCCTATGCATTTCTAAAGATAATTTCTTTACCCTTCATGCTTGTACAACTAAACACATCTTAAAAGGAGTATTTTTGCATTTAAAACATGCATATATGTGCTGAAGTTTTTTAAAAATATATGGCTCACGTGAGGAGAATATAACGGTCATAGCAGGAACATTTATTTAGATAAAGAGCAAAGCAAAGTAAACAATATTTGCTTTGTTAGTGTTGGTCCTTTGCTGCTAGTGAATTATGATCAGGACATTGTGAGGTAGTTTCTTGCAGGAGGGAAAAAAAGAGTGTATTTTACCTTGATATACAGGTGTGCATTTGCAAAACGTCTATACTTCAGGACTCAGGTGTAAGTTGTACTAGTTTGATAAGACTATGGCTAAATTTTGTAATTTAAACAAGGATTTATCAAAGTCGCAGGGGCTTGTTTAGTTGTTGAGTAGAGTGCACACATGGATGCTTTAGTGATTTTCTGATGGATGACATGCTTAGTGTAAATCCTTGCTTATTAGTATCTTTTATCATGAGAAAGAATGGTGCCCTAGTCTGACACACAAACTACTCTGTGTCTTAGTTTTTCACTGTTGAATCCTTTACTATGCTCTATGCAAAGAAATTTCTCCTGAGCTAAAGTTTTTGAGTGTGTCCATCTATAATAGCTTCTTTTTTTTTTCCCATGACTTTCTCTCTGCAGAGCTTGAGAAACACATTCCTGATCTCCATGTGTTGATTTCGACCCCTTTTCATCCTGCCTATGTCACGGCTGAAAGGATCAAGAAGGCAAAAAATCTACAACTTCTGCTGACAGCTGGAATTGGATCAGATCATGTTGATCTGAAAGCTGCTGCTGCTGCTGGATTGACAGTAGCAGAGGTCACTGGAAGCAATACTGTCTCAGTTGCGGAAGATGAACTGATGCGAATCTTAATTCTTGTCCGAAATTTCTTACCTGGACATCATCAGGTTATCAATGGGGAGTGGAATGTTGCTGCAATTGCGCACAGAGCTTATGATTTGGAAGGCAAGACTGTTGGAACTGTTGGTGCAGGACGTATTGGCAGACTTTTACTCCAGCGATTGAAGCCATTTAACTGTAATCTACTTT</genome_strand>
        <mrna_strand>CTTCTCTCTGTTTTTAGCAAAGTACAAAACCCTTTGCTGTAAATCC--AAAAAATTCCGATGGCGATGAGTCGTGTAGCTTCTACAGCAGCTCGTGCTATTACTTCACCTTCATCCTTAGTTTTTACCAGAGAACTTCAG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCTTCCCCTGGCCCCAAAAAGATTGTGGGTGTTTTCTACAAAGCAAATGAATATGCTGAAATGAACCCCAACTTTTTGGGCTGTGCAGAAAATGCCTTGGGGATACGTGAATGGTTAGAATCTAAAGGTCATCAGTACATAGTCACTCCTGACAAAGAAGGACCAGATTGTG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGCTTGAGAAACACATTCCTGATCTCCATGTGTTGATTTCGACCCCTTTTCATCCTGCCTATGTCACGGCTGAAAGGATCAAGAAGGCAAAAAATCTACAACTACTGCTGACAGCTGGAATTGGATCAGATCATGTTGATCTGAAAGCTGCTGCTGCTGCTGGATTGACAGTGGCAGAAGTCACTGGAAGCAATACTGTCTCAGTTGCGGAAGATGAACTGATGCGAATCTTAATTCTTGTCCGAAATTTCTTGCCTGGACATCATCAGGTTATCAATGGGGAGTGGAATGTTGCTGCAATTGCGCACAGAGCTTATGATTTGGAAGGCAAGACTGTTGGAACTGTTGGTGCANGACGTATTGGCAGACTTTTACTCCAACGATTGAAGCCATTTAACTGTAATCTACTTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0236E02-u8qcS/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E449969" ref_strand="+" ref_description="SGN-E449969 [cSTS-8-C17]">
      <seq>cttctctctgtttttaccaagtacaaaaccctttgctgtaaatccaaaaaattccgatggcgatgagtcgtgtagcttctacagcagctcgtgctattacttcaccttcatccttagtttttaccagagaacttcaggcttcccctggccccaaaaagattgtgggtgttttctacaaagcaaatgaatatgctgaaatgaaccccaactttttgggctgtgcagaaaatgccttggggatacgtgaatggttagaatctaaaggtcatcagtacatagtcactcctgacaaagaaggaccggattgtgagcttgagaaacacattcctgatctccatgtgttgatttcgaccccttttcatcctgcctatgtcacggctgaaaggatcaagaaggcaaaaaatctacaactactgctgacagctggaattggatcagatcatgttgatctgaaagctgctgctgctgctggattgacagtagcagaggtcactggaagcaatactgtctcagttgcggaagatgaactgatgcgaatcttaattcttgtccgaaatttcttgcctggacatcatcaggttatcaatggggagtggaatgttgctgcaattgcgcacagagcttatgatttggaaggcaagactgttggaactgttggtgcaggacgtattggcagacttttactccaacgattgaagccatttaactgtaatct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0236E02-u8qcS/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0236E02.1" temp_strand="+" temp_description="C02HBa0236E02.1  AC215430.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0236E02 sequenced_by:kribb upload_account_name:korea">
        <position start="65251" stop="68470"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="65551" g_stop="65689" g_length="139"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="137" r_length="137" r_score="0.942"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="65690" i_stop="66849" i_length="1160">
            <donor d_prob="1.000" d_score="0.98"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="66850" g_stop="67021" g_length="172"/>
          <reference_exon_boundary r_type="cDNA" r_start="138" r_stop="309" r_length="172" r_score="0.988"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="67022" i_stop="67764" i_length="743">
            <donor d_prob="0.994" d_score="0.98"/>
            <acceptor a_prob="0.987" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="67765" g_stop="68170" g_length="406"/>
          <reference_exon_boundary r_type="cDNA" r_start="310" r_stop="715" r_length="406" r_score="0.993"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0236E02.1" gen_strand="+" ref_id="SGN-E449969" ref_strand="+">
        <total_alignment_score>0.982</total_alignment_score>
        <cumulative_length_of_scored_exons>717</cumulative_length_of_scored_exons>
        <coverage percentage="1.003" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0236E02.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E449969" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="65551" e_stop="65689"/>
          <exon e_start="66850" e_stop="67021"/>
          <exon e_start="67765" e_stop="68170"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTTCTCTCTGTTTTTAGTAAGTACGAAACCCTTTTCTGTAAATCCAAAAAAAATTCCGATGGCGATGAGGCGTGTAGCTTCTACAGCAGCTCGTGCTATTGCTTCACCTTCATCCTTAGTTTTTACCAGAGAACTTCAGGTAACTAGCCATTTCTCCTCAATAGCCACTTTTTGTTGCTTTTGTTTTATATGACCTAGTTTTCGCCCTTTGATGAATTATCGGAAACCGGCACGGATCAACTCCGATTTTTCGAGAATCAAGTGAGTTGGAGATTGGAACAGAGGAAACTAAAGGAATTTAACCGTGTAAAGGAAAAAATTAAACACACTGTATTTGGTGCTCTACCCCTCGTCTCTTCTTTTTGGCTTTCCCCGTACTCTACACACCAAATGAAATGGCTCGGATATGAAAGGACTAATAACTTTTCAGTTTTCATTACTGCGTCCTTTTTTAAGCTTTCAGTTTTAATTTGCGTGAATATACCTAATTTTTATTAGGGTAGAGTTATATGTTTCAAATTAAATTGCTACCAAGTTAAATTTAAGAATGTTACATAAATTTAGAGACGGCAAGTTTATATACCAAGAAGGGTACTCCTTCATCCACAGAGAAACGGTGTCCAGTTCGAGTATGGGCGTGAATCTAGATATAGTTAATTCCAATGCAGATATCAGACATCGAGTGAGGAAAAAAAAGATTTTATTAATTTGTTATTTTTAGGTTGCTTTTCCTTTAACTGAAAATCTAACCCGGCAGGACCACAACAGTTCTTTTCCGATCATTACTAATGATACTTGATTTTCACGTGCGATTTCTGATATTTTTATACGGAGTAGGTGAAGAGTGAAATGTTTCACGGGTCTCAAGGACAATGGCAGCAGTGCTTCATTTTTTTTTGCATCTTCACGTGCTATATTATTACTTTGTTTATACTAGTTCGACTTGGAAAATCTTTTCATATTCAGTTGTCTGGGGAATAAATAAGATATTTCTTATTTTTTGATTAAAAAAAGAAGAAGATATTTCTTATTTAAAGAAGTGACAAATTGTACTAACTCATTTACCATGCCTAATATATTATATGTGACAATGATGATTTTTTTTAACTATTAATTGTTAGTTTGGACAAAAATGATCAAAGCAAGTATATTGAATAATGCTTATTTCTTGCCAACTGGTGCATCTACGAGATTATAGGAGTTGGATTATAATTTTAGCACATCCAGCATGCTTATATGACCTTAAAATATTCATGTATATTCTGTCCACTCACCTTTTATTTCTTCATTATTTTACAGGCTTCCCCTGGCCCCAAAAAGATTGTGGGTGTTTTCTACAAAGCAAATGAATATGCTGAAATGAACCCCAACTTTTTGGGCTGTGCAGAAAATGCCTTGGGGATACGTGAATGGTTAGAGTCTAAAGGTCATCAGTACATAGTCACTCCTGACAAAGAAGGACCAGATTGTGGTTAGTTCCTGCTAATCTATAATCTCTCATGTTCTATCCATTATCCCACTGAAGCCTATGCATTTCTAAAGATAATTTCTTTACCCTTCATGCTTGTACAACTAAACACATCTTAAAAGGAGTATTTTTGCATTTAAAACATGCATATATGTGCTGAAGTTTTTTAAAAATATATGGCTCACGTGAGGAGAATATAACGGTCATAGCAGGAACATTTATTTAGATAAAGAGCAAAGCAAAGTAAACAATATTTGCTTTGTTAGTGTTGGTCCTTTGCTGCTAGTGAATTATGATCAGGACATTGTGAGGTAGTTTCTTGCAGGAGGGAAAAAAAGAGTGTATTTTACCTTGATATACAGGTGTGCATTTGCAAAACGTCTATACTTCAGGACTCAGGTGTAAGTTGTACTAGTTTGATAAGACTATGGCTAAATTTTGTAATTTAAACAAGGATTTATCAAAGTCGCAGGGGCTTGTTTAGTTGTTGAGTAGAGTGCACACATGGATGCTTTAGTGATTTTCTGATGGATGACATGCTTAGTGTAAATCCTTGCTTATTAGTATCTTTTATCATGAGAAAGAATGGTGCCCTAGTCTGACACACAAACTACTCTGTGTCTTAGTTTTTCACTGTTGAATCCTTTACTATGCTCTATGCAAAGAAATTTCTCCTGAGCTAAAGTTTTTGAGTGTGTCCATCTATAATAGCTTCTTTTTTTTTTCCCATGACTTTCTCTCTGCAGAGCTTGAGAAACACATTCCTGATCTCCATGTGTTGATTTCGACCCCTTTTCATCCTGCCTATGTCACGGCTGAAAGGATCAAGAAGGCAAAAAATCTACAACTTCTGCTGACAGCTGGAATTGGATCAGATCATGTTGATCTGAAAGCTGCTGCTGCTGCTGGATTGACAGTAGCAGAGGTCACTGGAAGCAATACTGTCTCAGTTGCGGAAGATGAACTGATGCGAATCTTAATTCTTGTCCGAAATTTCTTACCTGGACATCATCAGGTTATCAATGGGGAGTGGAATGTTGCTGCAATTGCGCACAGAGCTTATGATTTGGAAGGCAAGACTGTTGGAACTGTTGGTGCAGGACGTATTGGCAGACTTTTACTCCAGCGATTGAAGCCATTTAACTGTAATCT</genome_strand>
        <mrna_strand>CTTCTCTCTGTTTTTACCAAGTACAAAACCCTTTGCTGTAAATCC--AAAAAATTCCGATGGCGATGAGTCGTGTAGCTTCTACAGCAGCTCGTGCTATTACTTCACCTTCATCCTTAGTTTTTACCAGAGAACTTCAG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCTTCCCCTGGCCCCAAAAAGATTGTGGGTGTTTTCTACAAAGCAAATGAATATGCTGAAATGAACCCCAACTTTTTGGGCTGTGCAGAAAATGCCTTGGGGATACGTGAATGGTTAGAATCTAAAGGTCATCAGTACATAGTCACTCCTGACAAAGAAGGACCGGATTGTG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGCTTGAGAAACACATTCCTGATCTCCATGTGTTGATTTCGACCCCTTTTCATCCTGCCTATGTCACGGCTGAAAGGATCAAGAAGGCAAAAAATCTACAACTACTGCTGACAGCTGGAATTGGATCAGATCATGTTGATCTGAAAGCTGCTGCTGCTGCTGGATTGACAGTAGCAGAGGTCACTGGAAGCAATACTGTCTCAGTTGCGGAAGATGAACTGATGCGAATCTTAATTCTTGTCCGAAATTTCTTGCCTGGACATCATCAGGTTATCAATGGGGAGTGGAATGTTGCTGCAATTGCGCACAGAGCTTATGATTTGGAAGGCAAGACTGTTGGAACTGTTGGTGCAGGACGTATTGGCAGACTTTTACTCCAACGATTGAAGCCATTTAACTGTAATCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0236E02-u8qcS/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E451696" ref_strand="+" ref_description="SGN-E451696 [cSTS-13-P14]">
      <seq>cttctctctgtttttaccaagtacaaaaccctttgctgtaaatccaaaaaattccgatggcgatgaagtcgtgtagcttctacagcagctcgtgctattacttcaccttcatccttagtttttaccagagaacttcaggcttcccctggccccaaaaagattgtgggtgttttctacaaagcaaatgaatatgctgaaatgaaccccaactttttgggctgtgcagaaaatgccttggggatacgtgaatggttagaatctaaaggtcatcagtacatagtcactcctgacaaagaaggaccagattgtgagcttgagaaacacattcctgatctccatgtgttgatttcgaccccttttcatcctgcctatgtcacggctgaaaggatcaagaaggcaaaaaatctacaactactgctgacagctggaattggatcagatcatgttgatctgaaagctgctgctgctgctggattgacagtagcagaggtcactggaagcaatactgtctcagttgcggaagatgaactgatgcgaatcttaattcttgtccgaaatttcttgcctggacatcatcaggttatcaatggggagtggaatgttgctgcaattgcgcacagagcttatgatttgg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0236E02-u8qcS/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0236E02.1" temp_strand="+" temp_description="C02HBa0236E02.1  AC215430.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0236E02 sequenced_by:kribb upload_account_name:korea">
        <position start="65251" stop="68388"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="65551" g_stop="65689" g_length="139"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="138" r_length="138" r_score="0.928"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="65690" i_stop="66849" i_length="1160">
            <donor d_prob="1.000" d_score="0.98"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="66850" g_stop="67021" g_length="172"/>
          <reference_exon_boundary r_type="cDNA" r_start="139" r_stop="310" r_length="172" r_score="0.994"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="67022" i_stop="67764" i_length="743">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="0.987" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="67765" g_stop="68088" g_length="324"/>
          <reference_exon_boundary r_type="cDNA" r_start="311" r_stop="634" r_length="324" r_score="0.994"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0236E02.1" gen_strand="+" ref_id="SGN-E451696" ref_strand="+">
        <total_alignment_score>0.980</total_alignment_score>
        <cumulative_length_of_scored_exons>635</cumulative_length_of_scored_exons>
        <coverage percentage="1.002" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0236E02.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E451696" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="65551" e_stop="65689"/>
          <exon e_start="66850" e_stop="67021"/>
          <exon e_start="67765" e_stop="68088"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTTCTCTCTGTTTTTAGTAAGTACGAAACCCTTTTCTGTAAATCCAAAAAAAATTCCGATGGCGATG-AGGCGTGTAGCTTCTACAGCAGCTCGTGCTATTGCTTCACCTTCATCCTTAGTTTTTACCAGAGAACTTCAGGTAACTAGCCATTTCTCCTCAATAGCCACTTTTTGTTGCTTTTGTTTTATATGACCTAGTTTTCGCCCTTTGATGAATTATCGGAAACCGGCACGGATCAACTCCGATTTTTCGAGAATCAAGTGAGTTGGAGATTGGAACAGAGGAAACTAAAGGAATTTAACCGTGTAAAGGAAAAAATTAAACACACTGTATTTGGTGCTCTACCCCTCGTCTCTTCTTTTTGGCTTTCCCCGTACTCTACACACCAAATGAAATGGCTCGGATATGAAAGGACTAATAACTTTTCAGTTTTCATTACTGCGTCCTTTTTTAAGCTTTCAGTTTTAATTTGCGTGAATATACCTAATTTTTATTAGGGTAGAGTTATATGTTTCAAATTAAATTGCTACCAAGTTAAATTTAAGAATGTTACATAAATTTAGAGACGGCAAGTTTATATACCAAGAAGGGTACTCCTTCATCCACAGAGAAACGGTGTCCAGTTCGAGTATGGGCGTGAATCTAGATATAGTTAATTCCAATGCAGATATCAGACATCGAGTGAGGAAAAAAAAGATTTTATTAATTTGTTATTTTTAGGTTGCTTTTCCTTTAACTGAAAATCTAACCCGGCAGGACCACAACAGTTCTTTTCCGATCATTACTAATGATACTTGATTTTCACGTGCGATTTCTGATATTTTTATACGGAGTAGGTGAAGAGTGAAATGTTTCACGGGTCTCAAGGACAATGGCAGCAGTGCTTCATTTTTTTTTGCATCTTCACGTGCTATATTATTACTTTGTTTATACTAGTTCGACTTGGAAAATCTTTTCATATTCAGTTGTCTGGGGAATAAATAAGATATTTCTTATTTTTTGATTAAAAAAAGAAGAAGATATTTCTTATTTAAAGAAGTGACAAATTGTACTAACTCATTTACCATGCCTAATATATTATATGTGACAATGATGATTTTTTTTAACTATTAATTGTTAGTTTGGACAAAAATGATCAAAGCAAGTATATTGAATAATGCTTATTTCTTGCCAACTGGTGCATCTACGAGATTATAGGAGTTGGATTATAATTTTAGCACATCCAGCATGCTTATATGACCTTAAAATATTCATGTATATTCTGTCCACTCACCTTTTATTTCTTCATTATTTTACAGGCTTCCCCTGGCCCCAAAAAGATTGTGGGTGTTTTCTACAAAGCAAATGAATATGCTGAAATGAACCCCAACTTTTTGGGCTGTGCAGAAAATGCCTTGGGGATACGTGAATGGTTAGAGTCTAAAGGTCATCAGTACATAGTCACTCCTGACAAAGAAGGACCAGATTGTGGTTAGTTCCTGCTAATCTATAATCTCTCATGTTCTATCCATTATCCCACTGAAGCCTATGCATTTCTAAAGATAATTTCTTTACCCTTCATGCTTGTACAACTAAACACATCTTAAAAGGAGTATTTTTGCATTTAAAACATGCATATATGTGCTGAAGTTTTTTAAAAATATATGGCTCACGTGAGGAGAATATAACGGTCATAGCAGGAACATTTATTTAGATAAAGAGCAAAGCAAAGTAAACAATATTTGCTTTGTTAGTGTTGGTCCTTTGCTGCTAGTGAATTATGATCAGGACATTGTGAGGTAGTTTCTTGCAGGAGGGAAAAAAAGAGTGTATTTTACCTTGATATACAGGTGTGCATTTGCAAAACGTCTATACTTCAGGACTCAGGTGTAAGTTGTACTAGTTTGATAAGACTATGGCTAAATTTTGTAATTTAAACAAGGATTTATCAAAGTCGCAGGGGCTTGTTTAGTTGTTGAGTAGAGTGCACACATGGATGCTTTAGTGATTTTCTGATGGATGACATGCTTAGTGTAAATCCTTGCTTATTAGTATCTTTTATCATGAGAAAGAATGGTGCCCTAGTCTGACACACAAACTACTCTGTGTCTTAGTTTTTCACTGTTGAATCCTTTACTATGCTCTATGCAAAGAAATTTCTCCTGAGCTAAAGTTTTTGAGTGTGTCCATCTATAATAGCTTCTTTTTTTTTTCCCATGACTTTCTCTCTGCAGAGCTTGAGAAACACATTCCTGATCTCCATGTGTTGATTTCGACCCCTTTTCATCCTGCCTATGTCACGGCTGAAAGGATCAAGAAGGCAAAAAATCTACAACTTCTGCTGACAGCTGGAATTGGATCAGATCATGTTGATCTGAAAGCTGCTGCTGCTGCTGGATTGACAGTAGCAGAGGTCACTGGAAGCAATACTGTCTCAGTTGCGGAAGATGAACTGATGCGAATCTTAATTCTTGTCCGAAATTTCTTACCTGGACATCATCAGGTTATCAATGGGGAGTGGAATGTTGCTGCAATTGCGCACAGAGCTTATGATTTGG</genome_strand>
        <mrna_strand>CTTCTCTCTGTTTTTACCAAGTACAAAACCCTTTGCTGTAAATCC--AAAAAATTCCGATGGCGATGAAGTCGTGTAGCTTCTACAGCAGCTCGTGCTATTACTTCACCTTCATCCTTAGTTTTTACCAGAGAACTTCAG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCTTCCCCTGGCCCCAAAAAGATTGTGGGTGTTTTCTACAAAGCAAATGAATATGCTGAAATGAACCCCAACTTTTTGGGCTGTGCAGAAAATGCCTTGGGGATACGTGAATGGTTAGAATCTAAAGGTCATCAGTACATAGTCACTCCTGACAAAGAAGGACCAGATTGTG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGCTTGAGAAACACATTCCTGATCTCCATGTGTTGATTTCGACCCCTTTTCATCCTGCCTATGTCACGGCTGAAAGGATCAAGAAGGCAAAAAATCTACAACTACTGCTGACAGCTGGAATTGGATCAGATCATGTTGATCTGAAAGCTGCTGCTGCTGCTGGATTGACAGTAGCAGAGGTCACTGGAAGCAATACTGTCTCAGTTGCGGAAGATGAACTGATGCGAATCTTAATTCTTGTCCGAAATTTCTTGCCTGGACATCATCAGGTTATCAATGGGGAGTGGAATGTTGCTGCAATTGCGCACAGAGCTTATGATTTGG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0236E02-u8qcS/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E444023" ref_strand="+" ref_description="SGN-E444023 [cSTA-41-I1]">
      <seq>cttctctctgtttttagcaaagtacaaaaccctttgctgtaaatccaaaaaattccgatggcgatgagtcgtgtagcttctacagcagctcgtgctattacttcaccttcatccttagtttttaccagagaacttcaggcttcccctggccccaaaaagattgtgggtgttttctacaaagcaaatgaatatgctgaaatgaaccccaactttttgggctgtgcagaaaatgccttggggatacgtgaatggttagaatctaaaggtcatcagtacatagtcactcctgacaaagaaggaccagattgtgagcttgagaaacacattcctgatctccatgtgttgatttcgaccccttttcatcctgcctatgtcacggctgaaaggatcaagaaggcaaaaaatctacaactactgctgacagctggaattggatcagatcatgttgatctgaaagctgctgctgctgctggattgacagtggcagaagtcactggaagcaatactgtctcagttgcggaagatgaactgatgcgaatcttaattcttgtccgaaatttcttgcctggacatcatcaggttatcaatggggagtggaatgttgctgcaattgcgcacagagcttatgatttg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0236E02-u8qcS/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0236E02.1" temp_strand="+" temp_description="C02HBa0236E02.1  AC215430.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0236E02 sequenced_by:kribb upload_account_name:korea">
        <position start="65251" stop="68387"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="65551" g_stop="65689" g_length="139"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="138" r_length="138" r_score="0.935"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="65690" i_stop="66849" i_length="1160">
            <donor d_prob="1.000" d_score="0.98"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="66850" g_stop="67021" g_length="172"/>
          <reference_exon_boundary r_type="cDNA" r_start="139" r_stop="310" r_length="172" r_score="0.994"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="67022" i_stop="67764" i_length="743">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="0.987" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="67765" g_stop="68087" g_length="323"/>
          <reference_exon_boundary r_type="cDNA" r_start="311" r_stop="633" r_length="323" r_score="0.988"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0236E02.1" gen_strand="+" ref_id="SGN-E444023" ref_strand="+">
        <total_alignment_score>0.978</total_alignment_score>
        <cumulative_length_of_scored_exons>634</cumulative_length_of_scored_exons>
        <coverage percentage="1.002" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0236E02.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E444023" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="65551" e_stop="65689"/>
          <exon e_start="66850" e_stop="67021"/>
          <exon e_start="67765" e_stop="68087"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTTCTCTCTGTTTTTAG-TAAGTACGAAACCCTTTTCTGTAAATCCAAAAAAAATTCCGATGGCGATGAGGCGTGTAGCTTCTACAGCAGCTCGTGCTATTGCTTCACCTTCATCCTTAGTTTTTACCAGAGAACTTCAGGTAACTAGCCATTTCTCCTCAATAGCCACTTTTTGTTGCTTTTGTTTTATATGACCTAGTTTTCGCCCTTTGATGAATTATCGGAAACCGGCACGGATCAACTCCGATTTTTCGAGAATCAAGTGAGTTGGAGATTGGAACAGAGGAAACTAAAGGAATTTAACCGTGTAAAGGAAAAAATTAAACACACTGTATTTGGTGCTCTACCCCTCGTCTCTTCTTTTTGGCTTTCCCCGTACTCTACACACCAAATGAAATGGCTCGGATATGAAAGGACTAATAACTTTTCAGTTTTCATTACTGCGTCCTTTTTTAAGCTTTCAGTTTTAATTTGCGTGAATATACCTAATTTTTATTAGGGTAGAGTTATATGTTTCAAATTAAATTGCTACCAAGTTAAATTTAAGAATGTTACATAAATTTAGAGACGGCAAGTTTATATACCAAGAAGGGTACTCCTTCATCCACAGAGAAACGGTGTCCAGTTCGAGTATGGGCGTGAATCTAGATATAGTTAATTCCAATGCAGATATCAGACATCGAGTGAGGAAAAAAAAGATTTTATTAATTTGTTATTTTTAGGTTGCTTTTCCTTTAACTGAAAATCTAACCCGGCAGGACCACAACAGTTCTTTTCCGATCATTACTAATGATACTTGATTTTCACGTGCGATTTCTGATATTTTTATACGGAGTAGGTGAAGAGTGAAATGTTTCACGGGTCTCAAGGACAATGGCAGCAGTGCTTCATTTTTTTTTGCATCTTCACGTGCTATATTATTACTTTGTTTATACTAGTTCGACTTGGAAAATCTTTTCATATTCAGTTGTCTGGGGAATAAATAAGATATTTCTTATTTTTTGATTAAAAAAAGAAGAAGATATTTCTTATTTAAAGAAGTGACAAATTGTACTAACTCATTTACCATGCCTAATATATTATATGTGACAATGATGATTTTTTTTAACTATTAATTGTTAGTTTGGACAAAAATGATCAAAGCAAGTATATTGAATAATGCTTATTTCTTGCCAACTGGTGCATCTACGAGATTATAGGAGTTGGATTATAATTTTAGCACATCCAGCATGCTTATATGACCTTAAAATATTCATGTATATTCTGTCCACTCACCTTTTATTTCTTCATTATTTTACAGGCTTCCCCTGGCCCCAAAAAGATTGTGGGTGTTTTCTACAAAGCAAATGAATATGCTGAAATGAACCCCAACTTTTTGGGCTGTGCAGAAAATGCCTTGGGGATACGTGAATGGTTAGAGTCTAAAGGTCATCAGTACATAGTCACTCCTGACAAAGAAGGACCAGATTGTGGTTAGTTCCTGCTAATCTATAATCTCTCATGTTCTATCCATTATCCCACTGAAGCCTATGCATTTCTAAAGATAATTTCTTTACCCTTCATGCTTGTACAACTAAACACATCTTAAAAGGAGTATTTTTGCATTTAAAACATGCATATATGTGCTGAAGTTTTTTAAAAATATATGGCTCACGTGAGGAGAATATAACGGTCATAGCAGGAACATTTATTTAGATAAAGAGCAAAGCAAAGTAAACAATATTTGCTTTGTTAGTGTTGGTCCTTTGCTGCTAGTGAATTATGATCAGGACATTGTGAGGTAGTTTCTTGCAGGAGGGAAAAAAAGAGTGTATTTTACCTTGATATACAGGTGTGCATTTGCAAAACGTCTATACTTCAGGACTCAGGTGTAAGTTGTACTAGTTTGATAAGACTATGGCTAAATTTTGTAATTTAAACAAGGATTTATCAAAGTCGCAGGGGCTTGTTTAGTTGTTGAGTAGAGTGCACACATGGATGCTTTAGTGATTTTCTGATGGATGACATGCTTAGTGTAAATCCTTGCTTATTAGTATCTTTTATCATGAGAAAGAATGGTGCCCTAGTCTGACACACAAACTACTCTGTGTCTTAGTTTTTCACTGTTGAATCCTTTACTATGCTCTATGCAAAGAAATTTCTCCTGAGCTAAAGTTTTTGAGTGTGTCCATCTATAATAGCTTCTTTTTTTTTTCCCATGACTTTCTCTCTGCAGAGCTTGAGAAACACATTCCTGATCTCCATGTGTTGATTTCGACCCCTTTTCATCCTGCCTATGTCACGGCTGAAAGGATCAAGAAGGCAAAAAATCTACAACTTCTGCTGACAGCTGGAATTGGATCAGATCATGTTGATCTGAAAGCTGCTGCTGCTGCTGGATTGACAGTAGCAGAGGTCACTGGAAGCAATACTGTCTCAGTTGCGGAAGATGAACTGATGCGAATCTTAATTCTTGTCCGAAATTTCTTACCTGGACATCATCAGGTTATCAATGGGGAGTGGAATGTTGCTGCAATTGCGCACAGAGCTTATGATTTG</genome_strand>
        <mrna_strand>CTTCTCTCTGTTTTTAGCAAAGTACAAAACCCTTTGCTGTAAATCC--AAAAAATTCCGATGGCGATGAGTCGTGTAGCTTCTACAGCAGCTCGTGCTATTACTTCACCTTCATCCTTAGTTTTTACCAGAGAACTTCAG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCTTCCCCTGGCCCCAAAAAGATTGTGGGTGTTTTCTACAAAGCAAATGAATATGCTGAAATGAACCCCAACTTTTTGGGCTGTGCAGAAAATGCCTTGGGGATACGTGAATGGTTAGAATCTAAAGGTCATCAGTACATAGTCACTCCTGACAAAGAAGGACCAGATTGTG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGCTTGAGAAACACATTCCTGATCTCCATGTGTTGATTTCGACCCCTTTTCATCCTGCCTATGTCACGGCTGAAAGGATCAAGAAGGCAAAAAATCTACAACTACTGCTGACAGCTGGAATTGGATCAGATCATGTTGATCTGAAAGCTGCTGCTGCTGCTGGATTGACAGTGGCAGAAGTCACTGGAAGCAATACTGTCTCAGTTGCGGAAGATGAACTGATGCGAATCTTAATTCTTGTCCGAAATTTCTTGCCTGGACATCATCAGGTTATCAATGGGGAGTGGAATGTTGCTGCAATTGCGCACAGAGCTTATGATTTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0236E02-u8qcS/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E399737" ref_strand="+" ref_description="SGN-E399737 [cSTC-2-A22]">
      <seq>cttctctctgtttttaccaagtacaaaaccctttgctgtaaatccaaaaaattccgatggcgatgagtcgtgtagcttctacagcagctcgtgctattacttcaccttcatccttagttttaccagagaacttcaggcttcccctggccccaaaaagattgtgggtgttttctacaaagcaaatgaatatgctgaaatgaaccccaactttttgggctgtgcagaaaatgccttggggatacgtgaatggttagaatctaaaggtcatcagtacatagtcactcctgacaaagaaggaccggattgtgagcttgagaaacacattcctgatctccatgtgttgatttcgaccccttttcatcctgcctatgtcacggctgaaaggatcaagaaggcaaaaaatctacaactactgctgacagctggaattggatcagatcatgttgatctgaaagctgctgctgctgctggattgacagtagcagaggtcactggaagcaatactgtctcagttgcggaagatgaactgatgcgaatcttaattcttgtccgaaatttcttgcctggacatcatcaggttatcaatggggagtggaatgttgctgcaattgcgcacagagcttatgatttg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0236E02-u8qcS/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0236E02.1" temp_strand="+" temp_description="C02HBa0236E02.1  AC215430.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0236E02 sequenced_by:kribb upload_account_name:korea">
        <position start="65251" stop="68387"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="65551" g_stop="65689" g_length="139"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="136" r_length="136" r_score="0.935"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="65690" i_stop="66849" i_length="1160">
            <donor d_prob="1.000" d_score="0.96"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="66850" g_stop="67021" g_length="172"/>
          <reference_exon_boundary r_type="cDNA" r_start="137" r_stop="308" r_length="172" r_score="0.988"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="67022" i_stop="67764" i_length="743">
            <donor d_prob="0.994" d_score="0.98"/>
            <acceptor a_prob="0.987" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="67765" g_stop="68087" g_length="323"/>
          <reference_exon_boundary r_type="cDNA" r_start="309" r_stop="631" r_length="323" r_score="0.994"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0236E02.1" gen_strand="+" ref_id="SGN-E399737" ref_strand="+">
        <total_alignment_score>0.979</total_alignment_score>
        <cumulative_length_of_scored_exons>634</cumulative_length_of_scored_exons>
        <coverage percentage="1.005" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0236E02.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E399737" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="65551" e_stop="65689"/>
          <exon e_start="66850" e_stop="67021"/>
          <exon e_start="67765" e_stop="68087"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTTCTCTCTGTTTTTAGTAAGTACGAAACCCTTTTCTGTAAATCCAAAAAAAATTCCGATGGCGATGAGGCGTGTAGCTTCTACAGCAGCTCGTGCTATTGCTTCACCTTCATCCTTAGTTTTTACCAGAGAACTTCAGGTAACTAGCCATTTCTCCTCAATAGCCACTTTTTGTTGCTTTTGTTTTATATGACCTAGTTTTCGCCCTTTGATGAATTATCGGAAACCGGCACGGATCAACTCCGATTTTTCGAGAATCAAGTGAGTTGGAGATTGGAACAGAGGAAACTAAAGGAATTTAACCGTGTAAAGGAAAAAATTAAACACACTGTATTTGGTGCTCTACCCCTCGTCTCTTCTTTTTGGCTTTCCCCGTACTCTACACACCAAATGAAATGGCTCGGATATGAAAGGACTAATAACTTTTCAGTTTTCATTACTGCGTCCTTTTTTAAGCTTTCAGTTTTAATTTGCGTGAATATACCTAATTTTTATTAGGGTAGAGTTATATGTTTCAAATTAAATTGCTACCAAGTTAAATTTAAGAATGTTACATAAATTTAGAGACGGCAAGTTTATATACCAAGAAGGGTACTCCTTCATCCACAGAGAAACGGTGTCCAGTTCGAGTATGGGCGTGAATCTAGATATAGTTAATTCCAATGCAGATATCAGACATCGAGTGAGGAAAAAAAAGATTTTATTAATTTGTTATTTTTAGGTTGCTTTTCCTTTAACTGAAAATCTAACCCGGCAGGACCACAACAGTTCTTTTCCGATCATTACTAATGATACTTGATTTTCACGTGCGATTTCTGATATTTTTATACGGAGTAGGTGAAGAGTGAAATGTTTCACGGGTCTCAAGGACAATGGCAGCAGTGCTTCATTTTTTTTTGCATCTTCACGTGCTATATTATTACTTTGTTTATACTAGTTCGACTTGGAAAATCTTTTCATATTCAGTTGTCTGGGGAATAAATAAGATATTTCTTATTTTTTGATTAAAAAAAGAAGAAGATATTTCTTATTTAAAGAAGTGACAAATTGTACTAACTCATTTACCATGCCTAATATATTATATGTGACAATGATGATTTTTTTTAACTATTAATTGTTAGTTTGGACAAAAATGATCAAAGCAAGTATATTGAATAATGCTTATTTCTTGCCAACTGGTGCATCTACGAGATTATAGGAGTTGGATTATAATTTTAGCACATCCAGCATGCTTATATGACCTTAAAATATTCATGTATATTCTGTCCACTCACCTTTTATTTCTTCATTATTTTACAGGCTTCCCCTGGCCCCAAAAAGATTGTGGGTGTTTTCTACAAAGCAAATGAATATGCTGAAATGAACCCCAACTTTTTGGGCTGTGCAGAAAATGCCTTGGGGATACGTGAATGGTTAGAGTCTAAAGGTCATCAGTACATAGTCACTCCTGACAAAGAAGGACCAGATTGTGGTTAGTTCCTGCTAATCTATAATCTCTCATGTTCTATCCATTATCCCACTGAAGCCTATGCATTTCTAAAGATAATTTCTTTACCCTTCATGCTTGTACAACTAAACACATCTTAAAAGGAGTATTTTTGCATTTAAAACATGCATATATGTGCTGAAGTTTTTTAAAAATATATGGCTCACGTGAGGAGAATATAACGGTCATAGCAGGAACATTTATTTAGATAAAGAGCAAAGCAAAGTAAACAATATTTGCTTTGTTAGTGTTGGTCCTTTGCTGCTAGTGAATTATGATCAGGACATTGTGAGGTAGTTTCTTGCAGGAGGGAAAAAAAGAGTGTATTTTACCTTGATATACAGGTGTGCATTTGCAAAACGTCTATACTTCAGGACTCAGGTGTAAGTTGTACTAGTTTGATAAGACTATGGCTAAATTTTGTAATTTAAACAAGGATTTATCAAAGTCGCAGGGGCTTGTTTAGTTGTTGAGTAGAGTGCACACATGGATGCTTTAGTGATTTTCTGATGGATGACATGCTTAGTGTAAATCCTTGCTTATTAGTATCTTTTATCATGAGAAAGAATGGTGCCCTAGTCTGACACACAAACTACTCTGTGTCTTAGTTTTTCACTGTTGAATCCTTTACTATGCTCTATGCAAAGAAATTTCTCCTGAGCTAAAGTTTTTGAGTGTGTCCATCTATAATAGCTTCTTTTTTTTTTCCCATGACTTTCTCTCTGCAGAGCTTGAGAAACACATTCCTGATCTCCATGTGTTGATTTCGACCCCTTTTCATCCTGCCTATGTCACGGCTGAAAGGATCAAGAAGGCAAAAAATCTACAACTTCTGCTGACAGCTGGAATTGGATCAGATCATGTTGATCTGAAAGCTGCTGCTGCTGCTGGATTGACAGTAGCAGAGGTCACTGGAAGCAATACTGTCTCAGTTGCGGAAGATGAACTGATGCGAATCTTAATTCTTGTCCGAAATTTCTTACCTGGACATCATCAGGTTATCAATGGGGAGTGGAATGTTGCTGCAATTGCGCACAGAGCTTATGATTTG</genome_strand>
        <mrna_strand>CTTCTCTCTGTTTTTACCAAGTACAAAACCCTTTGCTGTAAATCC--AAAAAATTCCGATGGCGATGAGTCGTGTAGCTTCTACAGCAGCTCGTGCTATTACTTCACCTTCATCCTTAG-TTTTACCAGAGAACTTCAG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCTTCCCCTGGCCCCAAAAAGATTGTGGGTGTTTTCTACAAAGCAAATGAATATGCTGAAATGAACCCCAACTTTTTGGGCTGTGCAGAAAATGCCTTGGGGATACGTGAATGGTTAGAATCTAAAGGTCATCAGTACATAGTCACTCCTGACAAAGAAGGACCGGATTGTG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGCTTGAGAAACACATTCCTGATCTCCATGTGTTGATTTCGACCCCTTTTCATCCTGCCTATGTCACGGCTGAAAGGATCAAGAAGGCAAAAAATCTACAACTACTGCTGACAGCTGGAATTGGATCAGATCATGTTGATCTGAAAGCTGCTGCTGCTGCTGGATTGACAGTAGCAGAGGTCACTGGAAGCAATACTGTCTCAGTTGCGGAAGATGAACTGATGCGAATCTTAATTCTTGTCCGAAATTTCTTGCCTGGACATCATCAGGTTATCAATGGGGAGTGGAATGTTGCTGCAATTGCGCACAGAGCTTATGATTTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0236E02-u8qcS/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E408614" ref_strand="+" ref_description="SGN-E408614 [PPI-11-L7]">
      <seq>cttctctctgtttttagcaagtacaaaaccctttgctgtaaatccaaaaaattccgatggcgatgaggcgtgtagcttctacagcagctcgtgctattgcttcaccttcatccttagtttttaccagagaacttcaggcttcccctggccccaaaaagattgtgggtgttttctacaaagcaaatgaatatgctgaaatgaaccccaactttttgggctgtgcagaaaatgccttggggatacgtgaatggttagaatctaaaggtcatcagtacatagtcactcctgacaaagaaggaccagattgtgagcttgagaaacacattcctgatctccatgtgttgatttcgaccccttttcatcctgcctatgtcacggctgaaaggatcaagaaggcaaaaaatctacaacttctgctgacagctggaattggatcagatcatgttgatctgaaagctgctgctgctgctggattgacagtagcagaggtcactggaagcaatactgtctcagttgctgaagatgaactgatgcgaatcttaattcttgtccgaaatttcttgcctggacatcatcaggttatcaatggggagtggaatgttgctg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0236E02-u8qcS/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0236E02.1" temp_strand="+" temp_description="C02HBa0236E02.1  AC215430.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0236E02 sequenced_by:kribb upload_account_name:korea">
        <position start="65251" stop="68361"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="65551" g_stop="65689" g_length="139"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="137" r_length="137" r_score="0.964"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="65690" i_stop="66849" i_length="1160">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="66850" g_stop="67021" g_length="172"/>
          <reference_exon_boundary r_type="cDNA" r_start="138" r_stop="309" r_length="172" r_score="0.994"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="67022" i_stop="67764" i_length="743">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="0.987" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="67765" g_stop="68061" g_length="297"/>
          <reference_exon_boundary r_type="cDNA" r_start="310" r_stop="606" r_length="297" r_score="0.993"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0236E02.1" gen_strand="+" ref_id="SGN-E408614" ref_strand="+">
        <total_alignment_score>0.987</total_alignment_score>
        <cumulative_length_of_scored_exons>608</cumulative_length_of_scored_exons>
        <coverage percentage="1.003" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0236E02.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E408614" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="65551" e_stop="65689"/>
          <exon e_start="66850" e_stop="67021"/>
          <exon e_start="67765" e_stop="68061"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTTCTCTCTGTTTTTAGTAAGTACGAAACCCTTTTCTGTAAATCCAAAAAAAATTCCGATGGCGATGAGGCGTGTAGCTTCTACAGCAGCTCGTGCTATTGCTTCACCTTCATCCTTAGTTTTTACCAGAGAACTTCAGGTAACTAGCCATTTCTCCTCAATAGCCACTTTTTGTTGCTTTTGTTTTATATGACCTAGTTTTCGCCCTTTGATGAATTATCGGAAACCGGCACGGATCAACTCCGATTTTTCGAGAATCAAGTGAGTTGGAGATTGGAACAGAGGAAACTAAAGGAATTTAACCGTGTAAAGGAAAAAATTAAACACACTGTATTTGGTGCTCTACCCCTCGTCTCTTCTTTTTGGCTTTCCCCGTACTCTACACACCAAATGAAATGGCTCGGATATGAAAGGACTAATAACTTTTCAGTTTTCATTACTGCGTCCTTTTTTAAGCTTTCAGTTTTAATTTGCGTGAATATACCTAATTTTTATTAGGGTAGAGTTATATGTTTCAAATTAAATTGCTACCAAGTTAAATTTAAGAATGTTACATAAATTTAGAGACGGCAAGTTTATATACCAAGAAGGGTACTCCTTCATCCACAGAGAAACGGTGTCCAGTTCGAGTATGGGCGTGAATCTAGATATAGTTAATTCCAATGCAGATATCAGACATCGAGTGAGGAAAAAAAAGATTTTATTAATTTGTTATTTTTAGGTTGCTTTTCCTTTAACTGAAAATCTAACCCGGCAGGACCACAACAGTTCTTTTCCGATCATTACTAATGATACTTGATTTTCACGTGCGATTTCTGATATTTTTATACGGAGTAGGTGAAGAGTGAAATGTTTCACGGGTCTCAAGGACAATGGCAGCAGTGCTTCATTTTTTTTTGCATCTTCACGTGCTATATTATTACTTTGTTTATACTAGTTCGACTTGGAAAATCTTTTCATATTCAGTTGTCTGGGGAATAAATAAGATATTTCTTATTTTTTGATTAAAAAAAGAAGAAGATATTTCTTATTTAAAGAAGTGACAAATTGTACTAACTCATTTACCATGCCTAATATATTATATGTGACAATGATGATTTTTTTTAACTATTAATTGTTAGTTTGGACAAAAATGATCAAAGCAAGTATATTGAATAATGCTTATTTCTTGCCAACTGGTGCATCTACGAGATTATAGGAGTTGGATTATAATTTTAGCACATCCAGCATGCTTATATGACCTTAAAATATTCATGTATATTCTGTCCACTCACCTTTTATTTCTTCATTATTTTACAGGCTTCCCCTGGCCCCAAAAAGATTGTGGGTGTTTTCTACAAAGCAAATGAATATGCTGAAATGAACCCCAACTTTTTGGGCTGTGCAGAAAATGCCTTGGGGATACGTGAATGGTTAGAGTCTAAAGGTCATCAGTACATAGTCACTCCTGACAAAGAAGGACCAGATTGTGGTTAGTTCCTGCTAATCTATAATCTCTCATGTTCTATCCATTATCCCACTGAAGCCTATGCATTTCTAAAGATAATTTCTTTACCCTTCATGCTTGTACAACTAAACACATCTTAAAAGGAGTATTTTTGCATTTAAAACATGCATATATGTGCTGAAGTTTTTTAAAAATATATGGCTCACGTGAGGAGAATATAACGGTCATAGCAGGAACATTTATTTAGATAAAGAGCAAAGCAAAGTAAACAATATTTGCTTTGTTAGTGTTGGTCCTTTGCTGCTAGTGAATTATGATCAGGACATTGTGAGGTAGTTTCTTGCAGGAGGGAAAAAAAGAGTGTATTTTACCTTGATATACAGGTGTGCATTTGCAAAACGTCTATACTTCAGGACTCAGGTGTAAGTTGTACTAGTTTGATAAGACTATGGCTAAATTTTGTAATTTAAACAAGGATTTATCAAAGTCGCAGGGGCTTGTTTAGTTGTTGAGTAGAGTGCACACATGGATGCTTTAGTGATTTTCTGATGGATGACATGCTTAGTGTAAATCCTTGCTTATTAGTATCTTTTATCATGAGAAAGAATGGTGCCCTAGTCTGACACACAAACTACTCTGTGTCTTAGTTTTTCACTGTTGAATCCTTTACTATGCTCTATGCAAAGAAATTTCTCCTGAGCTAAAGTTTTTGAGTGTGTCCATCTATAATAGCTTCTTTTTTTTTTCCCATGACTTTCTCTCTGCAGAGCTTGAGAAACACATTCCTGATCTCCATGTGTTGATTTCGACCCCTTTTCATCCTGCCTATGTCACGGCTGAAAGGATCAAGAAGGCAAAAAATCTACAACTTCTGCTGACAGCTGGAATTGGATCAGATCATGTTGATCTGAAAGCTGCTGCTGCTGCTGGATTGACAGTAGCAGAGGTCACTGGAAGCAATACTGTCTCAGTTGCGGAAGATGAACTGATGCGAATCTTAATTCTTGTCCGAAATTTCTTACCTGGACATCATCAGGTTATCAATGGGGAGTGGAATGTTGCTG</genome_strand>
        <mrna_strand>CTTCTCTCTGTTTTTAGCAAGTACAAAACCCTTTGCTGTAAATCC--AAAAAATTCCGATGGCGATGAGGCGTGTAGCTTCTACAGCAGCTCGTGCTATTGCTTCACCTTCATCCTTAGTTTTTACCAGAGAACTTCAG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCTTCCCCTGGCCCCAAAAAGATTGTGGGTGTTTTCTACAAAGCAAATGAATATGCTGAAATGAACCCCAACTTTTTGGGCTGTGCAGAAAATGCCTTGGGGATACGTGAATGGTTAGAATCTAAAGGTCATCAGTACATAGTCACTCCTGACAAAGAAGGACCAGATTGTG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGCTTGAGAAACACATTCCTGATCTCCATGTGTTGATTTCGACCCCTTTTCATCCTGCCTATGTCACGGCTGAAAGGATCAAGAAGGCAAAAAATCTACAACTTCTGCTGACAGCTGGAATTGGATCAGATCATGTTGATCTGAAAGCTGCTGCTGCTGCTGGATTGACAGTAGCAGAGGTCACTGGAAGCAATACTGTCTCAGTTGCTGAAGATGAACTGATGCGAATCTTAATTCTTGTCCGAAATTTCTTGCCTGGACATCATCAGGTTATCAATGGGGAGTGGAATGTTGCTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0236E02-u8qcS/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E476653" ref_strand="+" ref_description="SGN-E476653 [cSTB-45-H1]">
      <seq>cttctctctgtttttaccaagtacaaaaccctttgctgtaaatccaaaaaattccgatggcgatgagtcgtgtagcttctacagcagctcgtgctattacttcaccttcatccttagtttttaccagagaacttcaggcttcccctggccccaaaaagattgtgggtgttttctacaaagcaaatgaatatgctgaaatgaaccccaactttttgggctgtgcagaaaatgccttggggatacgtgaatggttagaatctaaaggtcatcagtacatagtcactcctgacaaagaaggaccagattgtgagcttgagaaacacattcctgatctccatgtgttgatttcgaccccttttcatcctgcctatgtcacggctgaaaggatcaagaaggcaaaaaatctacaactactgctgacagctggaattggatcagatcatgttgatctgaaagctgctgctgctgctggattgacagtagcagaggtcactggaagcaatactgtctcagttgcggaagatgaactgatgcgaatcttaattcttgtccgaaatttcttgcctggacatcatcaggttatcaatggggagt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0236E02-u8qcS/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0236E02.1" temp_strand="+" temp_description="C02HBa0236E02.1  AC215430.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0236E02 sequenced_by:kribb upload_account_name:korea">
        <position start="65251" stop="68349"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="65551" g_stop="65689" g_length="139"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="137" r_length="137" r_score="0.942"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="65690" i_stop="66849" i_length="1160">
            <donor d_prob="1.000" d_score="0.98"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="66850" g_stop="67021" g_length="172"/>
          <reference_exon_boundary r_type="cDNA" r_start="138" r_stop="309" r_length="172" r_score="0.994"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="67022" i_stop="67764" i_length="743">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="0.987" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="67765" g_stop="68049" g_length="285"/>
          <reference_exon_boundary r_type="cDNA" r_start="310" r_stop="594" r_length="285" r_score="0.993"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0236E02.1" gen_strand="+" ref_id="SGN-E476653" ref_strand="+">
        <total_alignment_score>0.982</total_alignment_score>
        <cumulative_length_of_scored_exons>596</cumulative_length_of_scored_exons>
        <coverage percentage="1.003" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0236E02.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E476653" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="65551" e_stop="65689"/>
          <exon e_start="66850" e_stop="67021"/>
          <exon e_start="67765" e_stop="68049"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTTCTCTCTGTTTTTAGTAAGTACGAAACCCTTTTCTGTAAATCCAAAAAAAATTCCGATGGCGATGAGGCGTGTAGCTTCTACAGCAGCTCGTGCTATTGCTTCACCTTCATCCTTAGTTTTTACCAGAGAACTTCAGGTAACTAGCCATTTCTCCTCAATAGCCACTTTTTGTTGCTTTTGTTTTATATGACCTAGTTTTCGCCCTTTGATGAATTATCGGAAACCGGCACGGATCAACTCCGATTTTTCGAGAATCAAGTGAGTTGGAGATTGGAACAGAGGAAACTAAAGGAATTTAACCGTGTAAAGGAAAAAATTAAACACACTGTATTTGGTGCTCTACCCCTCGTCTCTTCTTTTTGGCTTTCCCCGTACTCTACACACCAAATGAAATGGCTCGGATATGAAAGGACTAATAACTTTTCAGTTTTCATTACTGCGTCCTTTTTTAAGCTTTCAGTTTTAATTTGCGTGAATATACCTAATTTTTATTAGGGTAGAGTTATATGTTTCAAATTAAATTGCTACCAAGTTAAATTTAAGAATGTTACATAAATTTAGAGACGGCAAGTTTATATACCAAGAAGGGTACTCCTTCATCCACAGAGAAACGGTGTCCAGTTCGAGTATGGGCGTGAATCTAGATATAGTTAATTCCAATGCAGATATCAGACATCGAGTGAGGAAAAAAAAGATTTTATTAATTTGTTATTTTTAGGTTGCTTTTCCTTTAACTGAAAATCTAACCCGGCAGGACCACAACAGTTCTTTTCCGATCATTACTAATGATACTTGATTTTCACGTGCGATTTCTGATATTTTTATACGGAGTAGGTGAAGAGTGAAATGTTTCACGGGTCTCAAGGACAATGGCAGCAGTGCTTCATTTTTTTTTGCATCTTCACGTGCTATATTATTACTTTGTTTATACTAGTTCGACTTGGAAAATCTTTTCATATTCAGTTGTCTGGGGAATAAATAAGATATTTCTTATTTTTTGATTAAAAAAAGAAGAAGATATTTCTTATTTAAAGAAGTGACAAATTGTACTAACTCATTTACCATGCCTAATATATTATATGTGACAATGATGATTTTTTTTAACTATTAATTGTTAGTTTGGACAAAAATGATCAAAGCAAGTATATTGAATAATGCTTATTTCTTGCCAACTGGTGCATCTACGAGATTATAGGAGTTGGATTATAATTTTAGCACATCCAGCATGCTTATATGACCTTAAAATATTCATGTATATTCTGTCCACTCACCTTTTATTTCTTCATTATTTTACAGGCTTCCCCTGGCCCCAAAAAGATTGTGGGTGTTTTCTACAAAGCAAATGAATATGCTGAAATGAACCCCAACTTTTTGGGCTGTGCAGAAAATGCCTTGGGGATACGTGAATGGTTAGAGTCTAAAGGTCATCAGTACATAGTCACTCCTGACAAAGAAGGACCAGATTGTGGTTAGTTCCTGCTAATCTATAATCTCTCATGTTCTATCCATTATCCCACTGAAGCCTATGCATTTCTAAAGATAATTTCTTTACCCTTCATGCTTGTACAACTAAACACATCTTAAAAGGAGTATTTTTGCATTTAAAACATGCATATATGTGCTGAAGTTTTTTAAAAATATATGGCTCACGTGAGGAGAATATAACGGTCATAGCAGGAACATTTATTTAGATAAAGAGCAAAGCAAAGTAAACAATATTTGCTTTGTTAGTGTTGGTCCTTTGCTGCTAGTGAATTATGATCAGGACATTGTGAGGTAGTTTCTTGCAGGAGGGAAAAAAAGAGTGTATTTTACCTTGATATACAGGTGTGCATTTGCAAAACGTCTATACTTCAGGACTCAGGTGTAAGTTGTACTAGTTTGATAAGACTATGGCTAAATTTTGTAATTTAAACAAGGATTTATCAAAGTCGCAGGGGCTTGTTTAGTTGTTGAGTAGAGTGCACACATGGATGCTTTAGTGATTTTCTGATGGATGACATGCTTAGTGTAAATCCTTGCTTATTAGTATCTTTTATCATGAGAAAGAATGGTGCCCTAGTCTGACACACAAACTACTCTGTGTCTTAGTTTTTCACTGTTGAATCCTTTACTATGCTCTATGCAAAGAAATTTCTCCTGAGCTAAAGTTTTTGAGTGTGTCCATCTATAATAGCTTCTTTTTTTTTTCCCATGACTTTCTCTCTGCAGAGCTTGAGAAACACATTCCTGATCTCCATGTGTTGATTTCGACCCCTTTTCATCCTGCCTATGTCACGGCTGAAAGGATCAAGAAGGCAAAAAATCTACAACTTCTGCTGACAGCTGGAATTGGATCAGATCATGTTGATCTGAAAGCTGCTGCTGCTGCTGGATTGACAGTAGCAGAGGTCACTGGAAGCAATACTGTCTCAGTTGCGGAAGATGAACTGATGCGAATCTTAATTCTTGTCCGAAATTTCTTACCTGGACATCATCAGGTTATCAATGGGGAGT</genome_strand>
        <mrna_strand>CTTCTCTCTGTTTTTACCAAGTACAAAACCCTTTGCTGTAAATCC--AAAAAATTCCGATGGCGATGAGTCGTGTAGCTTCTACAGCAGCTCGTGCTATTACTTCACCTTCATCCTTAGTTTTTACCAGAGAACTTCAG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCTTCCCCTGGCCCCAAAAAGATTGTGGGTGTTTTCTACAAAGCAAATGAATATGCTGAAATGAACCCCAACTTTTTGGGCTGTGCAGAAAATGCCTTGGGGATACGTGAATGGTTAGAATCTAAAGGTCATCAGTACATAGTCACTCCTGACAAAGAAGGACCAGATTGTG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGCTTGAGAAACACATTCCTGATCTCCATGTGTTGATTTCGACCCCTTTTCATCCTGCCTATGTCACGGCTGAAAGGATCAAGAAGGCAAAAAATCTACAACTACTGCTGACAGCTGGAATTGGATCAGATCATGTTGATCTGAAAGCTGCTGCTGCTGCTGGATTGACAGTAGCAGAGGTCACTGGAAGCAATACTGTCTCAGTTGCGGAAGATGAACTGATGCGAATCTTAATTCTTGTCCGAAATTTCTTGCCTGGACATCATCAGGTTATCAATGGGGAGT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0236E02-u8qcS/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E479229" ref_strand="+" ref_description="SGN-E479229 [cSTD-9-M13]">
      <seq>cttctctctgtttttagcaaagtacaaaaccctttgctgtaaatccaaaaaattccgatggcgatgagtcctgtagcttctacagcagctcgtgctattacttcaccttcatccttagtttttaccagagaacttcaggcttcccctggccccaaaaagattgtgggtgttttctacaaagcaaatgaatatgctgaaatgaaccccaactttttgggctgtgcaaaaaatgccttggggatacgtgaatggttagaatctaaaggtcatcagtacatagtcactcctgacaaagaaggaccagattgtgagcttgagaaacacattcctgatctccatgtgttgatttcgaccccttttcatcctgcctatgtcacggctgaaaggatcaagaaggcaaaaaatctacaactactgctgacagctggaattggatcagatcatgttgatctgaaagctgctgctgctgctggattgacagtggcacacgtcactggaagcaatactgtctcagtcgcggaagatgaactgatgccaatct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0236E02-u8qcS/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0236E02.1" temp_strand="+" temp_description="C02HBa0236E02.1  AC215430.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0236E02 sequenced_by:kribb upload_account_name:korea">
        <position start="65251" stop="68295"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="65551" g_stop="65689" g_length="139"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="138" r_length="138" r_score="0.928"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="65690" i_stop="66849" i_length="1160">
            <donor d_prob="1.000" d_score="0.98"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="66850" g_stop="67021" g_length="172"/>
          <reference_exon_boundary r_type="cDNA" r_start="139" r_stop="310" r_length="172" r_score="0.988"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="67022" i_stop="67764" i_length="743">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="0.987" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="67765" g_stop="67995" g_length="231"/>
          <reference_exon_boundary r_type="cDNA" r_start="311" r_stop="541" r_length="231" r_score="0.974"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0236E02.1" gen_strand="+" ref_id="SGN-E479229" ref_strand="+">
        <total_alignment_score>0.967</total_alignment_score>
        <cumulative_length_of_scored_exons>542</cumulative_length_of_scored_exons>
        <coverage percentage="1.002" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0236E02.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E479229" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="65551" e_stop="65689"/>
          <exon e_start="66850" e_stop="67021"/>
          <exon e_start="67765" e_stop="67995"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTTCTCTCTGTTTTTAG-TAAGTACGAAACCCTTTTCTGTAAATCCAAAAAAAATTCCGATGGCGATGAGGCGTGTAGCTTCTACAGCAGCTCGTGCTATTGCTTCACCTTCATCCTTAGTTTTTACCAGAGAACTTCAGGTAACTAGCCATTTCTCCTCAATAGCCACTTTTTGTTGCTTTTGTTTTATATGACCTAGTTTTCGCCCTTTGATGAATTATCGGAAACCGGCACGGATCAACTCCGATTTTTCGAGAATCAAGTGAGTTGGAGATTGGAACAGAGGAAACTAAAGGAATTTAACCGTGTAAAGGAAAAAATTAAACACACTGTATTTGGTGCTCTACCCCTCGTCTCTTCTTTTTGGCTTTCCCCGTACTCTACACACCAAATGAAATGGCTCGGATATGAAAGGACTAATAACTTTTCAGTTTTCATTACTGCGTCCTTTTTTAAGCTTTCAGTTTTAATTTGCGTGAATATACCTAATTTTTATTAGGGTAGAGTTATATGTTTCAAATTAAATTGCTACCAAGTTAAATTTAAGAATGTTACATAAATTTAGAGACGGCAAGTTTATATACCAAGAAGGGTACTCCTTCATCCACAGAGAAACGGTGTCCAGTTCGAGTATGGGCGTGAATCTAGATATAGTTAATTCCAATGCAGATATCAGACATCGAGTGAGGAAAAAAAAGATTTTATTAATTTGTTATTTTTAGGTTGCTTTTCCTTTAACTGAAAATCTAACCCGGCAGGACCACAACAGTTCTTTTCCGATCATTACTAATGATACTTGATTTTCACGTGCGATTTCTGATATTTTTATACGGAGTAGGTGAAGAGTGAAATGTTTCACGGGTCTCAAGGACAATGGCAGCAGTGCTTCATTTTTTTTTGCATCTTCACGTGCTATATTATTACTTTGTTTATACTAGTTCGACTTGGAAAATCTTTTCATATTCAGTTGTCTGGGGAATAAATAAGATATTTCTTATTTTTTGATTAAAAAAAGAAGAAGATATTTCTTATTTAAAGAAGTGACAAATTGTACTAACTCATTTACCATGCCTAATATATTATATGTGACAATGATGATTTTTTTTAACTATTAATTGTTAGTTTGGACAAAAATGATCAAAGCAAGTATATTGAATAATGCTTATTTCTTGCCAACTGGTGCATCTACGAGATTATAGGAGTTGGATTATAATTTTAGCACATCCAGCATGCTTATATGACCTTAAAATATTCATGTATATTCTGTCCACTCACCTTTTATTTCTTCATTATTTTACAGGCTTCCCCTGGCCCCAAAAAGATTGTGGGTGTTTTCTACAAAGCAAATGAATATGCTGAAATGAACCCCAACTTTTTGGGCTGTGCAGAAAATGCCTTGGGGATACGTGAATGGTTAGAGTCTAAAGGTCATCAGTACATAGTCACTCCTGACAAAGAAGGACCAGATTGTGGTTAGTTCCTGCTAATCTATAATCTCTCATGTTCTATCCATTATCCCACTGAAGCCTATGCATTTCTAAAGATAATTTCTTTACCCTTCATGCTTGTACAACTAAACACATCTTAAAAGGAGTATTTTTGCATTTAAAACATGCATATATGTGCTGAAGTTTTTTAAAAATATATGGCTCACGTGAGGAGAATATAACGGTCATAGCAGGAACATTTATTTAGATAAAGAGCAAAGCAAAGTAAACAATATTTGCTTTGTTAGTGTTGGTCCTTTGCTGCTAGTGAATTATGATCAGGACATTGTGAGGTAGTTTCTTGCAGGAGGGAAAAAAAGAGTGTATTTTACCTTGATATACAGGTGTGCATTTGCAAAACGTCTATACTTCAGGACTCAGGTGTAAGTTGTACTAGTTTGATAAGACTATGGCTAAATTTTGTAATTTAAACAAGGATTTATCAAAGTCGCAGGGGCTTGTTTAGTTGTTGAGTAGAGTGCACACATGGATGCTTTAGTGATTTTCTGATGGATGACATGCTTAGTGTAAATCCTTGCTTATTAGTATCTTTTATCATGAGAAAGAATGGTGCCCTAGTCTGACACACAAACTACTCTGTGTCTTAGTTTTTCACTGTTGAATCCTTTACTATGCTCTATGCAAAGAAATTTCTCCTGAGCTAAAGTTTTTGAGTGTGTCCATCTATAATAGCTTCTTTTTTTTTTCCCATGACTTTCTCTCTGCAGAGCTTGAGAAACACATTCCTGATCTCCATGTGTTGATTTCGACCCCTTTTCATCCTGCCTATGTCACGGCTGAAAGGATCAAGAAGGCAAAAAATCTACAACTTCTGCTGACAGCTGGAATTGGATCAGATCATGTTGATCTGAAAGCTGCTGCTGCTGCTGGATTGACAGTAGCAGAGGTCACTGGAAGCAATACTGTCTCAGTTGCGGAAGATGAACTGATGCGAATCT</genome_strand>
        <mrna_strand>CTTCTCTCTGTTTTTAGCAAAGTACAAAACCCTTTGCTGTAAATCC--AAAAAATTCCGATGGCGATGAGTCCTGTAGCTTCTACAGCAGCTCGTGCTATTACTTCACCTTCATCCTTAGTTTTTACCAGAGAACTTCAG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCTTCCCCTGGCCCCAAAAAGATTGTGGGTGTTTTCTACAAAGCAAATGAATATGCTGAAATGAACCCCAACTTTTTGGGCTGTGCAAAAAATGCCTTGGGGATACGTGAATGGTTAGAATCTAAAGGTCATCAGTACATAGTCACTCCTGACAAAGAAGGACCAGATTGTG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGCTTGAGAAACACATTCCTGATCTCCATGTGTTGATTTCGACCCCTTTTCATCCTGCCTATGTCACGGCTGAAAGGATCAAGAAGGCAAAAAATCTACAACTACTGCTGACAGCTGGAATTGGATCAGATCATGTTGATCTGAAAGCTGCTGCTGCTGCTGGATTGACAGTGGCACACGTCACTGGAAGCAATACTGTCTCAGTCGCGGAAGATGAACTGATGCCAATCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0236E02-u8qcS/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E472689" ref_strand="+" ref_description="SGN-E472689 [cSTB-29-H15]">
      <seq>cttctctctgtttttaccaagtacaaaaccctttgctgtaaatccaaaaaattccgatggcgatgagtcgtgtagcttctacagcagctcgtgctattacttcaccttcatccttagtttttaccagagaacttcaggcttcccctggccccaaaaagattgtgggtgttttctacaaagcaaatgaatatgctgaaatgaaccccaactttttgggctgtgcagaaaatgccttggggatacgtgaatggttagaatctaaaggtcatcagtacatagtcactcctgacaaagaaggaccagattgtgagcttgagaaacacattcctgatctccatgtgttgatttcgaccccttttcatcctgcctatgtcacggctgaaaggatcaagaaggcaaaaaatctacaactactgctgacagctggaattggatcagatcatgttgatctgaaagctgctgctgctgctggattgacagtagcagaagtcactggaagcaatactgtc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0236E02-u8qcS/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0236E02.1" temp_strand="+" temp_description="C02HBa0236E02.1  AC215430.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0236E02 sequenced_by:kribb upload_account_name:korea">
        <position start="65251" stop="68264"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="65551" g_stop="65689" g_length="139"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="137" r_length="137" r_score="0.942"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="65690" i_stop="66849" i_length="1160">
            <donor d_prob="1.000" d_score="0.98"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="66850" g_stop="67021" g_length="172"/>
          <reference_exon_boundary r_type="cDNA" r_start="138" r_stop="309" r_length="172" r_score="0.994"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="67022" i_stop="67764" i_length="743">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="0.987" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="67765" g_stop="67964" g_length="200"/>
          <reference_exon_boundary r_type="cDNA" r_start="310" r_stop="509" r_length="200" r_score="0.990"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0236E02.1" gen_strand="+" ref_id="SGN-E472689" ref_strand="+">
        <total_alignment_score>0.978</total_alignment_score>
        <cumulative_length_of_scored_exons>511</cumulative_length_of_scored_exons>
        <coverage percentage="1.004" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0236E02.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E472689" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="65551" e_stop="65689"/>
          <exon e_start="66850" e_stop="67021"/>
          <exon e_start="67765" e_stop="67964"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTTCTCTCTGTTTTTAGTAAGTACGAAACCCTTTTCTGTAAATCCAAAAAAAATTCCGATGGCGATGAGGCGTGTAGCTTCTACAGCAGCTCGTGCTATTGCTTCACCTTCATCCTTAGTTTTTACCAGAGAACTTCAGGTAACTAGCCATTTCTCCTCAATAGCCACTTTTTGTTGCTTTTGTTTTATATGACCTAGTTTTCGCCCTTTGATGAATTATCGGAAACCGGCACGGATCAACTCCGATTTTTCGAGAATCAAGTGAGTTGGAGATTGGAACAGAGGAAACTAAAGGAATTTAACCGTGTAAAGGAAAAAATTAAACACACTGTATTTGGTGCTCTACCCCTCGTCTCTTCTTTTTGGCTTTCCCCGTACTCTACACACCAAATGAAATGGCTCGGATATGAAAGGACTAATAACTTTTCAGTTTTCATTACTGCGTCCTTTTTTAAGCTTTCAGTTTTAATTTGCGTGAATATACCTAATTTTTATTAGGGTAGAGTTATATGTTTCAAATTAAATTGCTACCAAGTTAAATTTAAGAATGTTACATAAATTTAGAGACGGCAAGTTTATATACCAAGAAGGGTACTCCTTCATCCACAGAGAAACGGTGTCCAGTTCGAGTATGGGCGTGAATCTAGATATAGTTAATTCCAATGCAGATATCAGACATCGAGTGAGGAAAAAAAAGATTTTATTAATTTGTTATTTTTAGGTTGCTTTTCCTTTAACTGAAAATCTAACCCGGCAGGACCACAACAGTTCTTTTCCGATCATTACTAATGATACTTGATTTTCACGTGCGATTTCTGATATTTTTATACGGAGTAGGTGAAGAGTGAAATGTTTCACGGGTCTCAAGGACAATGGCAGCAGTGCTTCATTTTTTTTTGCATCTTCACGTGCTATATTATTACTTTGTTTATACTAGTTCGACTTGGAAAATCTTTTCATATTCAGTTGTCTGGGGAATAAATAAGATATTTCTTATTTTTTGATTAAAAAAAGAAGAAGATATTTCTTATTTAAAGAAGTGACAAATTGTACTAACTCATTTACCATGCCTAATATATTATATGTGACAATGATGATTTTTTTTAACTATTAATTGTTAGTTTGGACAAAAATGATCAAAGCAAGTATATTGAATAATGCTTATTTCTTGCCAACTGGTGCATCTACGAGATTATAGGAGTTGGATTATAATTTTAGCACATCCAGCATGCTTATATGACCTTAAAATATTCATGTATATTCTGTCCACTCACCTTTTATTTCTTCATTATTTTACAGGCTTCCCCTGGCCCCAAAAAGATTGTGGGTGTTTTCTACAAAGCAAATGAATATGCTGAAATGAACCCCAACTTTTTGGGCTGTGCAGAAAATGCCTTGGGGATACGTGAATGGTTAGAGTCTAAAGGTCATCAGTACATAGTCACTCCTGACAAAGAAGGACCAGATTGTGGTTAGTTCCTGCTAATCTATAATCTCTCATGTTCTATCCATTATCCCACTGAAGCCTATGCATTTCTAAAGATAATTTCTTTACCCTTCATGCTTGTACAACTAAACACATCTTAAAAGGAGTATTTTTGCATTTAAAACATGCATATATGTGCTGAAGTTTTTTAAAAATATATGGCTCACGTGAGGAGAATATAACGGTCATAGCAGGAACATTTATTTAGATAAAGAGCAAAGCAAAGTAAACAATATTTGCTTTGTTAGTGTTGGTCCTTTGCTGCTAGTGAATTATGATCAGGACATTGTGAGGTAGTTTCTTGCAGGAGGGAAAAAAAGAGTGTATTTTACCTTGATATACAGGTGTGCATTTGCAAAACGTCTATACTTCAGGACTCAGGTGTAAGTTGTACTAGTTTGATAAGACTATGGCTAAATTTTGTAATTTAAACAAGGATTTATCAAAGTCGCAGGGGCTTGTTTAGTTGTTGAGTAGAGTGCACACATGGATGCTTTAGTGATTTTCTGATGGATGACATGCTTAGTGTAAATCCTTGCTTATTAGTATCTTTTATCATGAGAAAGAATGGTGCCCTAGTCTGACACACAAACTACTCTGTGTCTTAGTTTTTCACTGTTGAATCCTTTACTATGCTCTATGCAAAGAAATTTCTCCTGAGCTAAAGTTTTTGAGTGTGTCCATCTATAATAGCTTCTTTTTTTTTTCCCATGACTTTCTCTCTGCAGAGCTTGAGAAACACATTCCTGATCTCCATGTGTTGATTTCGACCCCTTTTCATCCTGCCTATGTCACGGCTGAAAGGATCAAGAAGGCAAAAAATCTACAACTTCTGCTGACAGCTGGAATTGGATCAGATCATGTTGATCTGAAAGCTGCTGCTGCTGCTGGATTGACAGTAGCAGAGGTCACTGGAAGCAATACTGTC</genome_strand>
        <mrna_strand>CTTCTCTCTGTTTTTACCAAGTACAAAACCCTTTGCTGTAAATCC--AAAAAATTCCGATGGCGATGAGTCGTGTAGCTTCTACAGCAGCTCGTGCTATTACTTCACCTTCATCCTTAGTTTTTACCAGAGAACTTCAG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCTTCCCCTGGCCCCAAAAAGATTGTGGGTGTTTTCTACAAAGCAAATGAATATGCTGAAATGAACCCCAACTTTTTGGGCTGTGCAGAAAATGCCTTGGGGATACGTGAATGGTTAGAATCTAAAGGTCATCAGTACATAGTCACTCCTGACAAAGAAGGACCAGATTGTG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGCTTGAGAAACACATTCCTGATCTCCATGTGTTGATTTCGACCCCTTTTCATCCTGCCTATGTCACGGCTGAAAGGATCAAGAAGGCAAAAAATCTACAACTACTGCTGACAGCTGGAATTGGATCAGATCATGTTGATCTGAAAGCTGCTGCTGCTGCTGGATTGACAGTAGCAGAAGTCACTGGAAGCAATACTGTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0236E02-u8qcS/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E445696" ref_strand="+" ref_description="SGN-E445696 [cSTA-18-A4]">
      <seq>cttctctctgtttttaccaagtacaaaaccctttgctgtaaatccaaaaaattccgatggcgatgagtcgtgtagcttctacagcagctcgtgctattacttcaccttcatccttagtttttaccagagaacttcaggcttcccctggccccaaaaagattgtgggtgttttctacaaagcaaatgaatatgctgaaatgaaccccaactttttgggctgtgcagaaaatgccttggggatacgtgaatggttagaatctaaaggtcatcagtacatagtcactcctgacaaagaaggaccggattgtgagcttgagaaacacattcctgatctccatgtgttgatttcgaccccttt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0236E02-u8qcS/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0236E02.1" temp_strand="+" temp_description="C02HBa0236E02.1  AC215430.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0236E02 sequenced_by:kribb upload_account_name:korea">
        <position start="65251" stop="68113"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="65551" g_stop="65689" g_length="139"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="137" r_length="137" r_score="0.942"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="65690" i_stop="66849" i_length="1160">
            <donor d_prob="1.000" d_score="0.98"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="66850" g_stop="67021" g_length="172"/>
          <reference_exon_boundary r_type="cDNA" r_start="138" r_stop="309" r_length="172" r_score="0.988"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="67022" i_stop="67764" i_length="743">
            <donor d_prob="0.994" d_score="0.98"/>
            <acceptor a_prob="0.987" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="67765" g_stop="67813" g_length="49"/>
          <reference_exon_boundary r_type="cDNA" r_start="310" r_stop="358" r_length="49" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0236E02.1" gen_strand="+" ref_id="SGN-E445696" ref_strand="+">
        <total_alignment_score>0.968</total_alignment_score>
        <cumulative_length_of_scored_exons>360</cumulative_length_of_scored_exons>
        <coverage percentage="1.006" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0236E02.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E445696" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="65551" e_stop="65689"/>
          <exon e_start="66850" e_stop="67021"/>
          <exon e_start="67765" e_stop="67813"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTTCTCTCTGTTTTTAGTAAGTACGAAACCCTTTTCTGTAAATCCAAAAAAAATTCCGATGGCGATGAGGCGTGTAGCTTCTACAGCAGCTCGTGCTATTGCTTCACCTTCATCCTTAGTTTTTACCAGAGAACTTCAGGTAACTAGCCATTTCTCCTCAATAGCCACTTTTTGTTGCTTTTGTTTTATATGACCTAGTTTTCGCCCTTTGATGAATTATCGGAAACCGGCACGGATCAACTCCGATTTTTCGAGAATCAAGTGAGTTGGAGATTGGAACAGAGGAAACTAAAGGAATTTAACCGTGTAAAGGAAAAAATTAAACACACTGTATTTGGTGCTCTACCCCTCGTCTCTTCTTTTTGGCTTTCCCCGTACTCTACACACCAAATGAAATGGCTCGGATATGAAAGGACTAATAACTTTTCAGTTTTCATTACTGCGTCCTTTTTTAAGCTTTCAGTTTTAATTTGCGTGAATATACCTAATTTTTATTAGGGTAGAGTTATATGTTTCAAATTAAATTGCTACCAAGTTAAATTTAAGAATGTTACATAAATTTAGAGACGGCAAGTTTATATACCAAGAAGGGTACTCCTTCATCCACAGAGAAACGGTGTCCAGTTCGAGTATGGGCGTGAATCTAGATATAGTTAATTCCAATGCAGATATCAGACATCGAGTGAGGAAAAAAAAGATTTTATTAATTTGTTATTTTTAGGTTGCTTTTCCTTTAACTGAAAATCTAACCCGGCAGGACCACAACAGTTCTTTTCCGATCATTACTAATGATACTTGATTTTCACGTGCGATTTCTGATATTTTTATACGGAGTAGGTGAAGAGTGAAATGTTTCACGGGTCTCAAGGACAATGGCAGCAGTGCTTCATTTTTTTTTGCATCTTCACGTGCTATATTATTACTTTGTTTATACTAGTTCGACTTGGAAAATCTTTTCATATTCAGTTGTCTGGGGAATAAATAAGATATTTCTTATTTTTTGATTAAAAAAAGAAGAAGATATTTCTTATTTAAAGAAGTGACAAATTGTACTAACTCATTTACCATGCCTAATATATTATATGTGACAATGATGATTTTTTTTAACTATTAATTGTTAGTTTGGACAAAAATGATCAAAGCAAGTATATTGAATAATGCTTATTTCTTGCCAACTGGTGCATCTACGAGATTATAGGAGTTGGATTATAATTTTAGCACATCCAGCATGCTTATATGACCTTAAAATATTCATGTATATTCTGTCCACTCACCTTTTATTTCTTCATTATTTTACAGGCTTCCCCTGGCCCCAAAAAGATTGTGGGTGTTTTCTACAAAGCAAATGAATATGCTGAAATGAACCCCAACTTTTTGGGCTGTGCAGAAAATGCCTTGGGGATACGTGAATGGTTAGAGTCTAAAGGTCATCAGTACATAGTCACTCCTGACAAAGAAGGACCAGATTGTGGTTAGTTCCTGCTAATCTATAATCTCTCATGTTCTATCCATTATCCCACTGAAGCCTATGCATTTCTAAAGATAATTTCTTTACCCTTCATGCTTGTACAACTAAACACATCTTAAAAGGAGTATTTTTGCATTTAAAACATGCATATATGTGCTGAAGTTTTTTAAAAATATATGGCTCACGTGAGGAGAATATAACGGTCATAGCAGGAACATTTATTTAGATAAAGAGCAAAGCAAAGTAAACAATATTTGCTTTGTTAGTGTTGGTCCTTTGCTGCTAGTGAATTATGATCAGGACATTGTGAGGTAGTTTCTTGCAGGAGGGAAAAAAAGAGTGTATTTTACCTTGATATACAGGTGTGCATTTGCAAAACGTCTATACTTCAGGACTCAGGTGTAAGTTGTACTAGTTTGATAAGACTATGGCTAAATTTTGTAATTTAAACAAGGATTTATCAAAGTCGCAGGGGCTTGTTTAGTTGTTGAGTAGAGTGCACACATGGATGCTTTAGTGATTTTCTGATGGATGACATGCTTAGTGTAAATCCTTGCTTATTAGTATCTTTTATCATGAGAAAGAATGGTGCCCTAGTCTGACACACAAACTACTCTGTGTCTTAGTTTTTCACTGTTGAATCCTTTACTATGCTCTATGCAAAGAAATTTCTCCTGAGCTAAAGTTTTTGAGTGTGTCCATCTATAATAGCTTCTTTTTTTTTTCCCATGACTTTCTCTCTGCAGAGCTTGAGAAACACATTCCTGATCTCCATGTGTTGATTTCGACCCCTTT</genome_strand>
        <mrna_strand>CTTCTCTCTGTTTTTACCAAGTACAAAACCCTTTGCTGTAAATCC--AAAAAATTCCGATGGCGATGAGTCGTGTAGCTTCTACAGCAGCTCGTGCTATTACTTCACCTTCATCCTTAGTTTTTACCAGAGAACTTCAG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCTTCCCCTGGCCCCAAAAAGATTGTGGGTGTTTTCTACAAAGCAAATGAATATGCTGAAATGAACCCCAACTTTTTGGGCTGTGCAGAAAATGCCTTGGGGATACGTGAATGGTTAGAATCTAAAGGTCATCAGTACATAGTCACTCCTGACAAAGAAGGACCGGATTGTG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGCTTGAGAAACACATTCCTGATCTCCATGTGTTGATTTCGACCCCTTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0236E02-u8qcS/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E455394" ref_strand="+" ref_description="SGN-E455394 [cSTS-26-M7]">
      <seq>ttctctctgtttttaccaagtacaaaaccctttgctgtaaatccaaaaaattccgatggcgatgagtcgtgtagcttctacagcagctcgtgctattacttcaccttcatccttagtttttaccagagaacttcaggcttcccctggccccaaaaagattgtgggtgttttctacaaagcaaatgaatatgctgaaatgaaccccaactttttgggctgtgcagaaaatgccttggggatacgtgaatggttagaatctaaaggtcatcagtacatagtcactcctgacaaagaaggaccagattgtgagcttgagaaacacattcctgatctccatgtgttgatttcgaccccttttcatcctgcctatgtcacggctgaaagtatcaagaaggcaaaaaatctacaactactgctgacagctggaattggatcagatcatgttgatctgaaagctgctgctgctgctggattgacagtagcagaggtcactggaagcaatactgtctcagttgcggaagatgaactgatgcgaatcttaattcttgtccgaaatttcttgcctggacatcatcaggttatcaatggggagtggaatgttgctgcaattgcgcacagagcttatgatttggaaggcaagactgttggaactgttggtgcangacgtattggcagacttttactccaacgattgaagccatttaactgtaatctactttac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0236E02-u8qcS/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0236E02.1" temp_strand="+" temp_description="C02HBa0236E02.1  AC215430.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0236E02 sequenced_by:kribb upload_account_name:korea">
        <position start="65252" stop="68477"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="65552" g_stop="65689" g_length="138"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="136" r_length="136" r_score="0.942"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="65690" i_stop="66849" i_length="1160">
            <donor d_prob="1.000" d_score="0.98"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="66850" g_stop="67021" g_length="172"/>
          <reference_exon_boundary r_type="cDNA" r_start="137" r_stop="308" r_length="172" r_score="0.994"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="67022" i_stop="67764" i_length="743">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="0.987" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="67765" g_stop="68177" g_length="413"/>
          <reference_exon_boundary r_type="cDNA" r_start="309" r_stop="721" r_length="413" r_score="0.988"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0236E02.1" gen_strand="+" ref_id="SGN-E455394" ref_strand="+">
        <total_alignment_score>0.981</total_alignment_score>
        <cumulative_length_of_scored_exons>723</cumulative_length_of_scored_exons>
        <coverage percentage="1.003" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0236E02.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E455394" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="65552" e_stop="65689"/>
          <exon e_start="66850" e_stop="67021"/>
          <exon e_start="67765" e_stop="68177"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTCTCTCTGTTTTTAGTAAGTACGAAACCCTTTTCTGTAAATCCAAAAAAAATTCCGATGGCGATGAGGCGTGTAGCTTCTACAGCAGCTCGTGCTATTGCTTCACCTTCATCCTTAGTTTTTACCAGAGAACTTCAGGTAACTAGCCATTTCTCCTCAATAGCCACTTTTTGTTGCTTTTGTTTTATATGACCTAGTTTTCGCCCTTTGATGAATTATCGGAAACCGGCACGGATCAACTCCGATTTTTCGAGAATCAAGTGAGTTGGAGATTGGAACAGAGGAAACTAAAGGAATTTAACCGTGTAAAGGAAAAAATTAAACACACTGTATTTGGTGCTCTACCCCTCGTCTCTTCTTTTTGGCTTTCCCCGTACTCTACACACCAAATGAAATGGCTCGGATATGAAAGGACTAATAACTTTTCAGTTTTCATTACTGCGTCCTTTTTTAAGCTTTCAGTTTTAATTTGCGTGAATATACCTAATTTTTATTAGGGTAGAGTTATATGTTTCAAATTAAATTGCTACCAAGTTAAATTTAAGAATGTTACATAAATTTAGAGACGGCAAGTTTATATACCAAGAAGGGTACTCCTTCATCCACAGAGAAACGGTGTCCAGTTCGAGTATGGGCGTGAATCTAGATATAGTTAATTCCAATGCAGATATCAGACATCGAGTGAGGAAAAAAAAGATTTTATTAATTTGTTATTTTTAGGTTGCTTTTCCTTTAACTGAAAATCTAACCCGGCAGGACCACAACAGTTCTTTTCCGATCATTACTAATGATACTTGATTTTCACGTGCGATTTCTGATATTTTTATACGGAGTAGGTGAAGAGTGAAATGTTTCACGGGTCTCAAGGACAATGGCAGCAGTGCTTCATTTTTTTTTGCATCTTCACGTGCTATATTATTACTTTGTTTATACTAGTTCGACTTGGAAAATCTTTTCATATTCAGTTGTCTGGGGAATAAATAAGATATTTCTTATTTTTTGATTAAAAAAAGAAGAAGATATTTCTTATTTAAAGAAGTGACAAATTGTACTAACTCATTTACCATGCCTAATATATTATATGTGACAATGATGATTTTTTTTAACTATTAATTGTTAGTTTGGACAAAAATGATCAAAGCAAGTATATTGAATAATGCTTATTTCTTGCCAACTGGTGCATCTACGAGATTATAGGAGTTGGATTATAATTTTAGCACATCCAGCATGCTTATATGACCTTAAAATATTCATGTATATTCTGTCCACTCACCTTTTATTTCTTCATTATTTTACAGGCTTCCCCTGGCCCCAAAAAGATTGTGGGTGTTTTCTACAAAGCAAATGAATATGCTGAAATGAACCCCAACTTTTTGGGCTGTGCAGAAAATGCCTTGGGGATACGTGAATGGTTAGAGTCTAAAGGTCATCAGTACATAGTCACTCCTGACAAAGAAGGACCAGATTGTGGTTAGTTCCTGCTAATCTATAATCTCTCATGTTCTATCCATTATCCCACTGAAGCCTATGCATTTCTAAAGATAATTTCTTTACCCTTCATGCTTGTACAACTAAACACATCTTAAAAGGAGTATTTTTGCATTTAAAACATGCATATATGTGCTGAAGTTTTTTAAAAATATATGGCTCACGTGAGGAGAATATAACGGTCATAGCAGGAACATTTATTTAGATAAAGAGCAAAGCAAAGTAAACAATATTTGCTTTGTTAGTGTTGGTCCTTTGCTGCTAGTGAATTATGATCAGGACATTGTGAGGTAGTTTCTTGCAGGAGGGAAAAAAAGAGTGTATTTTACCTTGATATACAGGTGTGCATTTGCAAAACGTCTATACTTCAGGACTCAGGTGTAAGTTGTACTAGTTTGATAAGACTATGGCTAAATTTTGTAATTTAAACAAGGATTTATCAAAGTCGCAGGGGCTTGTTTAGTTGTTGAGTAGAGTGCACACATGGATGCTTTAGTGATTTTCTGATGGATGACATGCTTAGTGTAAATCCTTGCTTATTAGTATCTTTTATCATGAGAAAGAATGGTGCCCTAGTCTGACACACAAACTACTCTGTGTCTTAGTTTTTCACTGTTGAATCCTTTACTATGCTCTATGCAAAGAAATTTCTCCTGAGCTAAAGTTTTTGAGTGTGTCCATCTATAATAGCTTCTTTTTTTTTTCCCATGACTTTCTCTCTGCAGAGCTTGAGAAACACATTCCTGATCTCCATGTGTTGATTTCGACCCCTTTTCATCCTGCCTATGTCACGGCTGAAAGGATCAAGAAGGCAAAAAATCTACAACTTCTGCTGACAGCTGGAATTGGATCAGATCATGTTGATCTGAAAGCTGCTGCTGCTGCTGGATTGACAGTAGCAGAGGTCACTGGAAGCAATACTGTCTCAGTTGCGGAAGATGAACTGATGCGAATCTTAATTCTTGTCCGAAATTTCTTACCTGGACATCATCAGGTTATCAATGGGGAGTGGAATGTTGCTGCAATTGCGCACAGAGCTTATGATTTGGAAGGCAAGACTGTTGGAACTGTTGGTGCAGGACGTATTGGCAGACTTTTACTCCAGCGATTGAAGCCATTTAACTGTAATCTACTTTAC</genome_strand>
        <mrna_strand>TTCTCTCTGTTTTTACCAAGTACAAAACCCTTTGCTGTAAATCC--AAAAAATTCCGATGGCGATGAGTCGTGTAGCTTCTACAGCAGCTCGTGCTATTACTTCACCTTCATCCTTAGTTTTTACCAGAGAACTTCAG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCTTCCCCTGGCCCCAAAAAGATTGTGGGTGTTTTCTACAAAGCAAATGAATATGCTGAAATGAACCCCAACTTTTTGGGCTGTGCAGAAAATGCCTTGGGGATACGTGAATGGTTAGAATCTAAAGGTCATCAGTACATAGTCACTCCTGACAAAGAAGGACCAGATTGTG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGCTTGAGAAACACATTCCTGATCTCCATGTGTTGATTTCGACCCCTTTTCATCCTGCCTATGTCACGGCTGAAAGTATCAAGAAGGCAAAAAATCTACAACTACTGCTGACAGCTGGAATTGGATCAGATCATGTTGATCTGAAAGCTGCTGCTGCTGCTGGATTGACAGTAGCAGAGGTCACTGGAAGCAATACTGTCTCAGTTGCGGAAGATGAACTGATGCGAATCTTAATTCTTGTCCGAAATTTCTTGCCTGGACATCATCAGGTTATCAATGGGGAGTGGAATGTTGCTGCAATTGCGCACAGAGCTTATGATTTGGAAGGCAAGACTGTTGGAACTGTTGGTGCANGACGTATTGGCAGACTTTTACTCCAACGATTGAAGCCATTTAACTGTAATCTACTTTAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0236E02-u8qcS/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E213161" ref_strand="+" ref_description="SGN-E213161 [cLEC-72-G14]">
      <seq>ttctctctgtttttagtaagtacgaaacccttttctgtaaatccaaaaaaaattccgatggcgatgaggcgtgtagcttctacagcagctcgtgctattgcttcaccttcatccttagtttttaccagagaacttcaggcttcccctggccccaaaaagattgtgggtgttttctacaaagcaaatgaatatgctgaaatgaaccccaactttttgggctgtgcagaaaatgccttggggatacgtgaatggttagagtctaaaggtcatcagtacatagtcactcctgacaaagaaggaccagattgtgagcttgagaaacacattcctgatctccatgtgttgatttcgaccccttttcatcctgcctatgtcacggctgaaaggatcaagaaggcaaaaaatctacaacttctgctgacagctggaattggatcagatcatgttgatctgaaagctgctgctgctgctggattgacagtagcagaggtcactggaagcaatactgtctcagttgcggaagatgaactgatgcgaatcttaattcttgtccgaaatttcttacctggacatcatcaggttatcaatggggagtggaatgttgctgcaattgcgcacagagcttatgatttggaaggcaagactgttggaactgttggtgcaggacgtattggcagacttttactccagcgattgaagccatttaactgtaatctact</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0236E02-u8qcS/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0236E02.1" temp_strand="+" temp_description="C02HBa0236E02.1  AC215430.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0236E02 sequenced_by:kribb upload_account_name:korea">
        <position start="65252" stop="68473"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="65552" g_stop="65689" g_length="138"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="138" r_length="138" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="65690" i_stop="66849" i_length="1160">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="66850" g_stop="67021" g_length="172"/>
          <reference_exon_boundary r_type="cDNA" r_start="139" r_stop="310" r_length="172" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="67022" i_stop="67764" i_length="743">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="0.987" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="67765" g_stop="68173" g_length="409"/>
          <reference_exon_boundary r_type="cDNA" r_start="311" r_stop="719" r_length="409" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0236E02.1" gen_strand="+" ref_id="SGN-E213161" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>719</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0236E02.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E213161" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="65552" e_stop="65689"/>
          <exon e_start="66850" e_stop="67021"/>
          <exon e_start="67765" e_stop="68173"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTCTCTCTGTTTTTAGTAAGTACGAAACCCTTTTCTGTAAATCCAAAAAAAATTCCGATGGCGATGAGGCGTGTAGCTTCTACAGCAGCTCGTGCTATTGCTTCACCTTCATCCTTAGTTTTTACCAGAGAACTTCAGGTAACTAGCCATTTCTCCTCAATAGCCACTTTTTGTTGCTTTTGTTTTATATGACCTAGTTTTCGCCCTTTGATGAATTATCGGAAACCGGCACGGATCAACTCCGATTTTTCGAGAATCAAGTGAGTTGGAGATTGGAACAGAGGAAACTAAAGGAATTTAACCGTGTAAAGGAAAAAATTAAACACACTGTATTTGGTGCTCTACCCCTCGTCTCTTCTTTTTGGCTTTCCCCGTACTCTACACACCAAATGAAATGGCTCGGATATGAAAGGACTAATAACTTTTCAGTTTTCATTACTGCGTCCTTTTTTAAGCTTTCAGTTTTAATTTGCGTGAATATACCTAATTTTTATTAGGGTAGAGTTATATGTTTCAAATTAAATTGCTACCAAGTTAAATTTAAGAATGTTACATAAATTTAGAGACGGCAAGTTTATATACCAAGAAGGGTACTCCTTCATCCACAGAGAAACGGTGTCCAGTTCGAGTATGGGCGTGAATCTAGATATAGTTAATTCCAATGCAGATATCAGACATCGAGTGAGGAAAAAAAAGATTTTATTAATTTGTTATTTTTAGGTTGCTTTTCCTTTAACTGAAAATCTAACCCGGCAGGACCACAACAGTTCTTTTCCGATCATTACTAATGATACTTGATTTTCACGTGCGATTTCTGATATTTTTATACGGAGTAGGTGAAGAGTGAAATGTTTCACGGGTCTCAAGGACAATGGCAGCAGTGCTTCATTTTTTTTTGCATCTTCACGTGCTATATTATTACTTTGTTTATACTAGTTCGACTTGGAAAATCTTTTCATATTCAGTTGTCTGGGGAATAAATAAGATATTTCTTATTTTTTGATTAAAAAAAGAAGAAGATATTTCTTATTTAAAGAAGTGACAAATTGTACTAACTCATTTACCATGCCTAATATATTATATGTGACAATGATGATTTTTTTTAACTATTAATTGTTAGTTTGGACAAAAATGATCAAAGCAAGTATATTGAATAATGCTTATTTCTTGCCAACTGGTGCATCTACGAGATTATAGGAGTTGGATTATAATTTTAGCACATCCAGCATGCTTATATGACCTTAAAATATTCATGTATATTCTGTCCACTCACCTTTTATTTCTTCATTATTTTACAGGCTTCCCCTGGCCCCAAAAAGATTGTGGGTGTTTTCTACAAAGCAAATGAATATGCTGAAATGAACCCCAACTTTTTGGGCTGTGCAGAAAATGCCTTGGGGATACGTGAATGGTTAGAGTCTAAAGGTCATCAGTACATAGTCACTCCTGACAAAGAAGGACCAGATTGTGGTTAGTTCCTGCTAATCTATAATCTCTCATGTTCTATCCATTATCCCACTGAAGCCTATGCATTTCTAAAGATAATTTCTTTACCCTTCATGCTTGTACAACTAAACACATCTTAAAAGGAGTATTTTTGCATTTAAAACATGCATATATGTGCTGAAGTTTTTTAAAAATATATGGCTCACGTGAGGAGAATATAACGGTCATAGCAGGAACATTTATTTAGATAAAGAGCAAAGCAAAGTAAACAATATTTGCTTTGTTAGTGTTGGTCCTTTGCTGCTAGTGAATTATGATCAGGACATTGTGAGGTAGTTTCTTGCAGGAGGGAAAAAAAGAGTGTATTTTACCTTGATATACAGGTGTGCATTTGCAAAACGTCTATACTTCAGGACTCAGGTGTAAGTTGTACTAGTTTGATAAGACTATGGCTAAATTTTGTAATTTAAACAAGGATTTATCAAAGTCGCAGGGGCTTGTTTAGTTGTTGAGTAGAGTGCACACATGGATGCTTTAGTGATTTTCTGATGGATGACATGCTTAGTGTAAATCCTTGCTTATTAGTATCTTTTATCATGAGAAAGAATGGTGCCCTAGTCTGACACACAAACTACTCTGTGTCTTAGTTTTTCACTGTTGAATCCTTTACTATGCTCTATGCAAAGAAATTTCTCCTGAGCTAAAGTTTTTGAGTGTGTCCATCTATAATAGCTTCTTTTTTTTTTCCCATGACTTTCTCTCTGCAGAGCTTGAGAAACACATTCCTGATCTCCATGTGTTGATTTCGACCCCTTTTCATCCTGCCTATGTCACGGCTGAAAGGATCAAGAAGGCAAAAAATCTACAACTTCTGCTGACAGCTGGAATTGGATCAGATCATGTTGATCTGAAAGCTGCTGCTGCTGCTGGATTGACAGTAGCAGAGGTCACTGGAAGCAATACTGTCTCAGTTGCGGAAGATGAACTGATGCGAATCTTAATTCTTGTCCGAAATTTCTTACCTGGACATCATCAGGTTATCAATGGGGAGTGGAATGTTGCTGCAATTGCGCACAGAGCTTATGATTTGGAAGGCAAGACTGTTGGAACTGTTGGTGCAGGACGTATTGGCAGACTTTTACTCCAGCGATTGAAGCCATTTAACTGTAATCTACT</genome_strand>
        <mrna_strand>TTCTCTCTGTTTTTAGTAAGTACGAAACCCTTTTCTGTAAATCCAAAAAAAATTCCGATGGCGATGAGGCGTGTAGCTTCTACAGCAGCTCGTGCTATTGCTTCACCTTCATCCTTAGTTTTTACCAGAGAACTTCAG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCTTCCCCTGGCCCCAAAAAGATTGTGGGTGTTTTCTACAAAGCAAATGAATATGCTGAAATGAACCCCAACTTTTTGGGCTGTGCAGAAAATGCCTTGGGGATACGTGAATGGTTAGAGTCTAAAGGTCATCAGTACATAGTCACTCCTGACAAAGAAGGACCAGATTGTG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGCTTGAGAAACACATTCCTGATCTCCATGTGTTGATTTCGACCCCTTTTCATCCTGCCTATGTCACGGCTGAAAGGATCAAGAAGGCAAAAAATCTACAACTTCTGCTGACAGCTGGAATTGGATCAGATCATGTTGATCTGAAAGCTGCTGCTGCTGCTGGATTGACAGTAGCAGAGGTCACTGGAAGCAATACTGTCTCAGTTGCGGAAGATGAACTGATGCGAATCTTAATTCTTGTCCGAAATTTCTTACCTGGACATCATCAGGTTATCAATGGGGAGTGGAATGTTGCTGCAATTGCGCACAGAGCTTATGATTTGGAAGGCAAGACTGTTGGAACTGTTGGTGCAGGACGTATTGGCAGACTTTTACTCCAGCGATTGAAGCCATTTAACTGTAATCTACT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0236E02-u8qcS/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E336779" ref_strand="+" ref_description="SGN-E336779 [cTOE-5-G21]">
      <seq>ttctctctgtttttagtaagtacgaaacccttttctgtaaatccaaaaaaaattccgatggcgatgaggcgtgtagcttctacagcagctcgtgctattgcttcaccttcatccttagtttttaccagagaacttcaggcttcccctggccccaaaaagattgtgggtgttttctacaaagcaaatgaatatgctgaaatgaaccccaactttttgggctgtgcagaaaatgccttggggatacgtgaatggttagagtctaaaggtcatcagtacatagtcactcctgacaaagaaggaccagattgtgagcttgagaaacacattcctgatctccatgtgttgatttcgaccccttttcatcctgcctatgtcacggctgaaaggatcaagaaggcaaaaaatctacaacttctgctgacagctggaattggatcagatcatgttgatctgaaagctgctgctgctgctggattgacagtagcagaggtcactggaagcaatactgtctcagttgcggaagatgaactgatgcgaatcttaattcttgtccgaaatttcttacctggacatcatcaagttatcaatggggagtggaatgttgctgcaattg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0236E02-u8qcS/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0236E02.1" temp_strand="+" temp_description="C02HBa0236E02.1  AC215430.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0236E02 sequenced_by:kribb upload_account_name:korea">
        <position start="65252" stop="68367"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="65552" g_stop="65689" g_length="138"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="138" r_length="138" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="65690" i_stop="66849" i_length="1160">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="66850" g_stop="67021" g_length="172"/>
          <reference_exon_boundary r_type="cDNA" r_start="139" r_stop="310" r_length="172" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="67022" i_stop="67764" i_length="743">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="0.987" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="67765" g_stop="68067" g_length="303"/>
          <reference_exon_boundary r_type="cDNA" r_start="311" r_stop="613" r_length="303" r_score="0.997"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0236E02.1" gen_strand="+" ref_id="SGN-E336779" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>613</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0236E02.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E336779" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="65552" e_stop="65689"/>
          <exon e_start="66850" e_stop="67021"/>
          <exon e_start="67765" e_stop="68067"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTCTCTCTGTTTTTAGTAAGTACGAAACCCTTTTCTGTAAATCCAAAAAAAATTCCGATGGCGATGAGGCGTGTAGCTTCTACAGCAGCTCGTGCTATTGCTTCACCTTCATCCTTAGTTTTTACCAGAGAACTTCAGGTAACTAGCCATTTCTCCTCAATAGCCACTTTTTGTTGCTTTTGTTTTATATGACCTAGTTTTCGCCCTTTGATGAATTATCGGAAACCGGCACGGATCAACTCCGATTTTTCGAGAATCAAGTGAGTTGGAGATTGGAACAGAGGAAACTAAAGGAATTTAACCGTGTAAAGGAAAAAATTAAACACACTGTATTTGGTGCTCTACCCCTCGTCTCTTCTTTTTGGCTTTCCCCGTACTCTACACACCAAATGAAATGGCTCGGATATGAAAGGACTAATAACTTTTCAGTTTTCATTACTGCGTCCTTTTTTAAGCTTTCAGTTTTAATTTGCGTGAATATACCTAATTTTTATTAGGGTAGAGTTATATGTTTCAAATTAAATTGCTACCAAGTTAAATTTAAGAATGTTACATAAATTTAGAGACGGCAAGTTTATATACCAAGAAGGGTACTCCTTCATCCACAGAGAAACGGTGTCCAGTTCGAGTATGGGCGTGAATCTAGATATAGTTAATTCCAATGCAGATATCAGACATCGAGTGAGGAAAAAAAAGATTTTATTAATTTGTTATTTTTAGGTTGCTTTTCCTTTAACTGAAAATCTAACCCGGCAGGACCACAACAGTTCTTTTCCGATCATTACTAATGATACTTGATTTTCACGTGCGATTTCTGATATTTTTATACGGAGTAGGTGAAGAGTGAAATGTTTCACGGGTCTCAAGGACAATGGCAGCAGTGCTTCATTTTTTTTTGCATCTTCACGTGCTATATTATTACTTTGTTTATACTAGTTCGACTTGGAAAATCTTTTCATATTCAGTTGTCTGGGGAATAAATAAGATATTTCTTATTTTTTGATTAAAAAAAGAAGAAGATATTTCTTATTTAAAGAAGTGACAAATTGTACTAACTCATTTACCATGCCTAATATATTATATGTGACAATGATGATTTTTTTTAACTATTAATTGTTAGTTTGGACAAAAATGATCAAAGCAAGTATATTGAATAATGCTTATTTCTTGCCAACTGGTGCATCTACGAGATTATAGGAGTTGGATTATAATTTTAGCACATCCAGCATGCTTATATGACCTTAAAATATTCATGTATATTCTGTCCACTCACCTTTTATTTCTTCATTATTTTACAGGCTTCCCCTGGCCCCAAAAAGATTGTGGGTGTTTTCTACAAAGCAAATGAATATGCTGAAATGAACCCCAACTTTTTGGGCTGTGCAGAAAATGCCTTGGGGATACGTGAATGGTTAGAGTCTAAAGGTCATCAGTACATAGTCACTCCTGACAAAGAAGGACCAGATTGTGGTTAGTTCCTGCTAATCTATAATCTCTCATGTTCTATCCATTATCCCACTGAAGCCTATGCATTTCTAAAGATAATTTCTTTACCCTTCATGCTTGTACAACTAAACACATCTTAAAAGGAGTATTTTTGCATTTAAAACATGCATATATGTGCTGAAGTTTTTTAAAAATATATGGCTCACGTGAGGAGAATATAACGGTCATAGCAGGAACATTTATTTAGATAAAGAGCAAAGCAAAGTAAACAATATTTGCTTTGTTAGTGTTGGTCCTTTGCTGCTAGTGAATTATGATCAGGACATTGTGAGGTAGTTTCTTGCAGGAGGGAAAAAAAGAGTGTATTTTACCTTGATATACAGGTGTGCATTTGCAAAACGTCTATACTTCAGGACTCAGGTGTAAGTTGTACTAGTTTGATAAGACTATGGCTAAATTTTGTAATTTAAACAAGGATTTATCAAAGTCGCAGGGGCTTGTTTAGTTGTTGAGTAGAGTGCACACATGGATGCTTTAGTGATTTTCTGATGGATGACATGCTTAGTGTAAATCCTTGCTTATTAGTATCTTTTATCATGAGAAAGAATGGTGCCCTAGTCTGACACACAAACTACTCTGTGTCTTAGTTTTTCACTGTTGAATCCTTTACTATGCTCTATGCAAAGAAATTTCTCCTGAGCTAAAGTTTTTGAGTGTGTCCATCTATAATAGCTTCTTTTTTTTTTCCCATGACTTTCTCTCTGCAGAGCTTGAGAAACACATTCCTGATCTCCATGTGTTGATTTCGACCCCTTTTCATCCTGCCTATGTCACGGCTGAAAGGATCAAGAAGGCAAAAAATCTACAACTTCTGCTGACAGCTGGAATTGGATCAGATCATGTTGATCTGAAAGCTGCTGCTGCTGCTGGATTGACAGTAGCAGAGGTCACTGGAAGCAATACTGTCTCAGTTGCGGAAGATGAACTGATGCGAATCTTAATTCTTGTCCGAAATTTCTTACCTGGACATCATCAGGTTATCAATGGGGAGTGGAATGTTGCTGCAATTG</genome_strand>
        <mrna_strand>TTCTCTCTGTTTTTAGTAAGTACGAAACCCTTTTCTGTAAATCCAAAAAAAATTCCGATGGCGATGAGGCGTGTAGCTTCTACAGCAGCTCGTGCTATTGCTTCACCTTCATCCTTAGTTTTTACCAGAGAACTTCAG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCTTCCCCTGGCCCCAAAAAGATTGTGGGTGTTTTCTACAAAGCAAATGAATATGCTGAAATGAACCCCAACTTTTTGGGCTGTGCAGAAAATGCCTTGGGGATACGTGAATGGTTAGAGTCTAAAGGTCATCAGTACATAGTCACTCCTGACAAAGAAGGACCAGATTGTG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGCTTGAGAAACACATTCCTGATCTCCATGTGTTGATTTCGACCCCTTTTCATCCTGCCTATGTCACGGCTGAAAGGATCAAGAAGGCAAAAAATCTACAACTTCTGCTGACAGCTGGAATTGGATCAGATCATGTTGATCTGAAAGCTGCTGCTGCTGCTGGATTGACAGTAGCAGAGGTCACTGGAAGCAATACTGTCTCAGTTGCGGAAGATGAACTGATGCGAATCTTAATTCTTGTCCGAAATTTCTTACCTGGACATCATCAAGTTATCAATGGGGAGTGGAATGTTGCTGCAATTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0236E02-u8qcS/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E213037" ref_strand="+" ref_description="SGN-E213037 [cLEC-72-F7]">
      <seq>ttctctctgtttttagtaagtacgaaacccttttctgtaaatccaaaaaaaattccgatggcgatgaggcgtgtagcttctacagcagctcgtgctattgcttcaccttcatccttagtttttaccagagaacttcaggcttcccctggccccaaaaagattgtgggtgttttctacaaagcaaatgaatatgctgaaatgaaccccaactttttgggctgtgcagaaaatgccttggggatacgtgaatggttagagtctaaaggtcatcagtacatagtcactcctgacaaagaaggaccagattgtgagcttgagaaacacattcctgatctccatgtgttgatttcgaccccttttcatcctgcctatgtcacggctgaaaggatcaagaaggcaaaaaatctacaacttctgctgacagctggaattggatcagatcatgttgatctgaaagctgctgctgctgctggattgacagtagcagaggtcactggaagcaatactgtctcagttgcggaagatgaactgatgcgaatcttaattcttgtccgaaatttcttacctggacatcat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0236E02-u8qcS/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0236E02.1" temp_strand="+" temp_description="C02HBa0236E02.1  AC215430.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0236E02 sequenced_by:kribb upload_account_name:korea">
        <position start="65252" stop="68330"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="65552" g_stop="65689" g_length="138"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="138" r_length="138" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="65690" i_stop="66849" i_length="1160">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="66850" g_stop="67021" g_length="172"/>
          <reference_exon_boundary r_type="cDNA" r_start="139" r_stop="310" r_length="172" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="67022" i_stop="67764" i_length="743">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="0.987" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="67765" g_stop="68030" g_length="266"/>
          <reference_exon_boundary r_type="cDNA" r_start="311" r_stop="576" r_length="266" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0236E02.1" gen_strand="+" ref_id="SGN-E213037" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>576</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0236E02.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E213037" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="65552" e_stop="65689"/>
          <exon e_start="66850" e_stop="67021"/>
          <exon e_start="67765" e_stop="68030"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTCTCTCTGTTTTTAGTAAGTACGAAACCCTTTTCTGTAAATCCAAAAAAAATTCCGATGGCGATGAGGCGTGTAGCTTCTACAGCAGCTCGTGCTATTGCTTCACCTTCATCCTTAGTTTTTACCAGAGAACTTCAGGTAACTAGCCATTTCTCCTCAATAGCCACTTTTTGTTGCTTTTGTTTTATATGACCTAGTTTTCGCCCTTTGATGAATTATCGGAAACCGGCACGGATCAACTCCGATTTTTCGAGAATCAAGTGAGTTGGAGATTGGAACAGAGGAAACTAAAGGAATTTAACCGTGTAAAGGAAAAAATTAAACACACTGTATTTGGTGCTCTACCCCTCGTCTCTTCTTTTTGGCTTTCCCCGTACTCTACACACCAAATGAAATGGCTCGGATATGAAAGGACTAATAACTTTTCAGTTTTCATTACTGCGTCCTTTTTTAAGCTTTCAGTTTTAATTTGCGTGAATATACCTAATTTTTATTAGGGTAGAGTTATATGTTTCAAATTAAATTGCTACCAAGTTAAATTTAAGAATGTTACATAAATTTAGAGACGGCAAGTTTATATACCAAGAAGGGTACTCCTTCATCCACAGAGAAACGGTGTCCAGTTCGAGTATGGGCGTGAATCTAGATATAGTTAATTCCAATGCAGATATCAGACATCGAGTGAGGAAAAAAAAGATTTTATTAATTTGTTATTTTTAGGTTGCTTTTCCTTTAACTGAAAATCTAACCCGGCAGGACCACAACAGTTCTTTTCCGATCATTACTAATGATACTTGATTTTCACGTGCGATTTCTGATATTTTTATACGGAGTAGGTGAAGAGTGAAATGTTTCACGGGTCTCAAGGACAATGGCAGCAGTGCTTCATTTTTTTTTGCATCTTCACGTGCTATATTATTACTTTGTTTATACTAGTTCGACTTGGAAAATCTTTTCATATTCAGTTGTCTGGGGAATAAATAAGATATTTCTTATTTTTTGATTAAAAAAAGAAGAAGATATTTCTTATTTAAAGAAGTGACAAATTGTACTAACTCATTTACCATGCCTAATATATTATATGTGACAATGATGATTTTTTTTAACTATTAATTGTTAGTTTGGACAAAAATGATCAAAGCAAGTATATTGAATAATGCTTATTTCTTGCCAACTGGTGCATCTACGAGATTATAGGAGTTGGATTATAATTTTAGCACATCCAGCATGCTTATATGACCTTAAAATATTCATGTATATTCTGTCCACTCACCTTTTATTTCTTCATTATTTTACAGGCTTCCCCTGGCCCCAAAAAGATTGTGGGTGTTTTCTACAAAGCAAATGAATATGCTGAAATGAACCCCAACTTTTTGGGCTGTGCAGAAAATGCCTTGGGGATACGTGAATGGTTAGAGTCTAAAGGTCATCAGTACATAGTCACTCCTGACAAAGAAGGACCAGATTGTGGTTAGTTCCTGCTAATCTATAATCTCTCATGTTCTATCCATTATCCCACTGAAGCCTATGCATTTCTAAAGATAATTTCTTTACCCTTCATGCTTGTACAACTAAACACATCTTAAAAGGAGTATTTTTGCATTTAAAACATGCATATATGTGCTGAAGTTTTTTAAAAATATATGGCTCACGTGAGGAGAATATAACGGTCATAGCAGGAACATTTATTTAGATAAAGAGCAAAGCAAAGTAAACAATATTTGCTTTGTTAGTGTTGGTCCTTTGCTGCTAGTGAATTATGATCAGGACATTGTGAGGTAGTTTCTTGCAGGAGGGAAAAAAAGAGTGTATTTTACCTTGATATACAGGTGTGCATTTGCAAAACGTCTATACTTCAGGACTCAGGTGTAAGTTGTACTAGTTTGATAAGACTATGGCTAAATTTTGTAATTTAAACAAGGATTTATCAAAGTCGCAGGGGCTTGTTTAGTTGTTGAGTAGAGTGCACACATGGATGCTTTAGTGATTTTCTGATGGATGACATGCTTAGTGTAAATCCTTGCTTATTAGTATCTTTTATCATGAGAAAGAATGGTGCCCTAGTCTGACACACAAACTACTCTGTGTCTTAGTTTTTCACTGTTGAATCCTTTACTATGCTCTATGCAAAGAAATTTCTCCTGAGCTAAAGTTTTTGAGTGTGTCCATCTATAATAGCTTCTTTTTTTTTTCCCATGACTTTCTCTCTGCAGAGCTTGAGAAACACATTCCTGATCTCCATGTGTTGATTTCGACCCCTTTTCATCCTGCCTATGTCACGGCTGAAAGGATCAAGAAGGCAAAAAATCTACAACTTCTGCTGACAGCTGGAATTGGATCAGATCATGTTGATCTGAAAGCTGCTGCTGCTGCTGGATTGACAGTAGCAGAGGTCACTGGAAGCAATACTGTCTCAGTTGCGGAAGATGAACTGATGCGAATCTTAATTCTTGTCCGAAATTTCTTACCTGGACATCAT</genome_strand>
        <mrna_strand>TTCTCTCTGTTTTTAGTAAGTACGAAACCCTTTTCTGTAAATCCAAAAAAAATTCCGATGGCGATGAGGCGTGTAGCTTCTACAGCAGCTCGTGCTATTGCTTCACCTTCATCCTTAGTTTTTACCAGAGAACTTCAG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCTTCCCCTGGCCCCAAAAAGATTGTGGGTGTTTTCTACAAAGCAAATGAATATGCTGAAATGAACCCCAACTTTTTGGGCTGTGCAGAAAATGCCTTGGGGATACGTGAATGGTTAGAGTCTAAAGGTCATCAGTACATAGTCACTCCTGACAAAGAAGGACCAGATTGTG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGCTTGAGAAACACATTCCTGATCTCCATGTGTTGATTTCGACCCCTTTTCATCCTGCCTATGTCACGGCTGAAAGGATCAAGAAGGCAAAAAATCTACAACTTCTGCTGACAGCTGGAATTGGATCAGATCATGTTGATCTGAAAGCTGCTGCTGCTGCTGGATTGACAGTAGCAGAGGTCACTGGAAGCAATACTGTCTCAGTTGCGGAAGATGAACTGATGCGAATCTTAATTCTTGTCCGAAATTTCTTACCTGGACATCAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0236E02-u8qcS/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E209493" ref_strand="+" ref_description="SGN-E209493 [cLEC-54-G8]">
      <seq>ttctctctgtttttagtaagtacgaaacccttttctgtaaatccaaaaaaaattccgatggcgatgaggcgtgtagcttctacagcagctcgtgctattgcttcaccttcatccttagtttttaccagagaacttcaggcttcccctggccccaaaaagattgtgggtgttttctacaaagcaaatgaatatgctgaaatgaaccccaactttttgggctgtgcagaaaatgccttggggatacgtgaatggttagagtctaaaggtcatcagtacatagtcactcctgacaaagaaagaccagattgtgagcttgagaaacacattcctgatctccatgtgttgatttcgaccccttttcatcctgcctatgtcacggctgaaaggatcaagaaggcaaaaaatctacaacttctgctgacagctggaattggatcagatcatgttgatctgaaagctgctgctgctgctggattgacagtaccagaggtcactggaagcaatactgtct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0236E02-u8qcS/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0236E02.1" temp_strand="+" temp_description="C02HBa0236E02.1  AC215430.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0236E02 sequenced_by:kribb upload_account_name:korea">
        <position start="65252" stop="68265"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="65552" g_stop="65689" g_length="138"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="138" r_length="138" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="65690" i_stop="66849" i_length="1160">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="66850" g_stop="67021" g_length="172"/>
          <reference_exon_boundary r_type="cDNA" r_start="139" r_stop="310" r_length="172" r_score="0.994"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="67022" i_stop="67764" i_length="743">
            <donor d_prob="0.994" d_score="0.98"/>
            <acceptor a_prob="0.987" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="67765" g_stop="67965" g_length="201"/>
          <reference_exon_boundary r_type="cDNA" r_start="311" r_stop="511" r_length="201" r_score="0.995"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0236E02.1" gen_strand="+" ref_id="SGN-E209493" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>511</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0236E02.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E209493" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="65552" e_stop="65689"/>
          <exon e_start="66850" e_stop="67021"/>
          <exon e_start="67765" e_stop="67965"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTCTCTCTGTTTTTAGTAAGTACGAAACCCTTTTCTGTAAATCCAAAAAAAATTCCGATGGCGATGAGGCGTGTAGCTTCTACAGCAGCTCGTGCTATTGCTTCACCTTCATCCTTAGTTTTTACCAGAGAACTTCAGGTAACTAGCCATTTCTCCTCAATAGCCACTTTTTGTTGCTTTTGTTTTATATGACCTAGTTTTCGCCCTTTGATGAATTATCGGAAACCGGCACGGATCAACTCCGATTTTTCGAGAATCAAGTGAGTTGGAGATTGGAACAGAGGAAACTAAAGGAATTTAACCGTGTAAAGGAAAAAATTAAACACACTGTATTTGGTGCTCTACCCCTCGTCTCTTCTTTTTGGCTTTCCCCGTACTCTACACACCAAATGAAATGGCTCGGATATGAAAGGACTAATAACTTTTCAGTTTTCATTACTGCGTCCTTTTTTAAGCTTTCAGTTTTAATTTGCGTGAATATACCTAATTTTTATTAGGGTAGAGTTATATGTTTCAAATTAAATTGCTACCAAGTTAAATTTAAGAATGTTACATAAATTTAGAGACGGCAAGTTTATATACCAAGAAGGGTACTCCTTCATCCACAGAGAAACGGTGTCCAGTTCGAGTATGGGCGTGAATCTAGATATAGTTAATTCCAATGCAGATATCAGACATCGAGTGAGGAAAAAAAAGATTTTATTAATTTGTTATTTTTAGGTTGCTTTTCCTTTAACTGAAAATCTAACCCGGCAGGACCACAACAGTTCTTTTCCGATCATTACTAATGATACTTGATTTTCACGTGCGATTTCTGATATTTTTATACGGAGTAGGTGAAGAGTGAAATGTTTCACGGGTCTCAAGGACAATGGCAGCAGTGCTTCATTTTTTTTTGCATCTTCACGTGCTATATTATTACTTTGTTTATACTAGTTCGACTTGGAAAATCTTTTCATATTCAGTTGTCTGGGGAATAAATAAGATATTTCTTATTTTTTGATTAAAAAAAGAAGAAGATATTTCTTATTTAAAGAAGTGACAAATTGTACTAACTCATTTACCATGCCTAATATATTATATGTGACAATGATGATTTTTTTTAACTATTAATTGTTAGTTTGGACAAAAATGATCAAAGCAAGTATATTGAATAATGCTTATTTCTTGCCAACTGGTGCATCTACGAGATTATAGGAGTTGGATTATAATTTTAGCACATCCAGCATGCTTATATGACCTTAAAATATTCATGTATATTCTGTCCACTCACCTTTTATTTCTTCATTATTTTACAGGCTTCCCCTGGCCCCAAAAAGATTGTGGGTGTTTTCTACAAAGCAAATGAATATGCTGAAATGAACCCCAACTTTTTGGGCTGTGCAGAAAATGCCTTGGGGATACGTGAATGGTTAGAGTCTAAAGGTCATCAGTACATAGTCACTCCTGACAAAGAAGGACCAGATTGTGGTTAGTTCCTGCTAATCTATAATCTCTCATGTTCTATCCATTATCCCACTGAAGCCTATGCATTTCTAAAGATAATTTCTTTACCCTTCATGCTTGTACAACTAAACACATCTTAAAAGGAGTATTTTTGCATTTAAAACATGCATATATGTGCTGAAGTTTTTTAAAAATATATGGCTCACGTGAGGAGAATATAACGGTCATAGCAGGAACATTTATTTAGATAAAGAGCAAAGCAAAGTAAACAATATTTGCTTTGTTAGTGTTGGTCCTTTGCTGCTAGTGAATTATGATCAGGACATTGTGAGGTAGTTTCTTGCAGGAGGGAAAAAAAGAGTGTATTTTACCTTGATATACAGGTGTGCATTTGCAAAACGTCTATACTTCAGGACTCAGGTGTAAGTTGTACTAGTTTGATAAGACTATGGCTAAATTTTGTAATTTAAACAAGGATTTATCAAAGTCGCAGGGGCTTGTTTAGTTGTTGAGTAGAGTGCACACATGGATGCTTTAGTGATTTTCTGATGGATGACATGCTTAGTGTAAATCCTTGCTTATTAGTATCTTTTATCATGAGAAAGAATGGTGCCCTAGTCTGACACACAAACTACTCTGTGTCTTAGTTTTTCACTGTTGAATCCTTTACTATGCTCTATGCAAAGAAATTTCTCCTGAGCTAAAGTTTTTGAGTGTGTCCATCTATAATAGCTTCTTTTTTTTTTCCCATGACTTTCTCTCTGCAGAGCTTGAGAAACACATTCCTGATCTCCATGTGTTGATTTCGACCCCTTTTCATCCTGCCTATGTCACGGCTGAAAGGATCAAGAAGGCAAAAAATCTACAACTTCTGCTGACAGCTGGAATTGGATCAGATCATGTTGATCTGAAAGCTGCTGCTGCTGCTGGATTGACAGTAGCAGAGGTCACTGGAAGCAATACTGTCT</genome_strand>
        <mrna_strand>TTCTCTCTGTTTTTAGTAAGTACGAAACCCTTTTCTGTAAATCCAAAAAAAATTCCGATGGCGATGAGGCGTGTAGCTTCTACAGCAGCTCGTGCTATTGCTTCACCTTCATCCTTAGTTTTTACCAGAGAACTTCAG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCTTCCCCTGGCCCCAAAAAGATTGTGGGTGTTTTCTACAAAGCAAATGAATATGCTGAAATGAACCCCAACTTTTTGGGCTGTGCAGAAAATGCCTTGGGGATACGTGAATGGTTAGAGTCTAAAGGTCATCAGTACATAGTCACTCCTGACAAAGAAAGACCAGATTGTG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGCTTGAGAAACACATTCCTGATCTCCATGTGTTGATTTCGACCCCTTTTCATCCTGCCTATGTCACGGCTGAAAGGATCAAGAAGGCAAAAAATCTACAACTTCTGCTGACAGCTGGAATTGGATCAGATCATGTTGATCTGAAAGCTGCTGCTGCTGCTGGATTGACAGTACCAGAGGTCACTGGAAGCAATACTGTCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0236E02-u8qcS/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E445791" ref_strand="+" ref_description="SGN-E445791 [cSTA-18-H21]">
      <seq>ttctctctgtttttaccaagtacaaaaccctttgctgtaaatccaaaaaattccgatggcgatgagtcgtgtagcttctacagcagctcgtgctattacttcaccttcatccttagtttttaccagagaacttcaggcttcccctggccccaaaaagattgtgggtgttttctacaaagcaaatgaatatgctgaaatgaaccccaactttttgggctgtgcagaaaatgccttggggatacgtgaatggttagaatctaaaggtcatcagtacatagtcactcctgacaaagaaagaccggattgtgagcttgagaaacacattcctgatctccatgtgttgatttcgaccccttttcatcctgcctatgtcacggctgaaaggatcaagaaggcaaaaaatctacaactactgctgacagctggaattggatcagatcatgttgatctgaaagctgctgctgctgctggattgacagtag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0236E02-u8qcS/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0236E02.1" temp_strand="+" temp_description="C02HBa0236E02.1  AC215430.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0236E02 sequenced_by:kribb upload_account_name:korea">
        <position start="65252" stop="68238"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="65552" g_stop="65689" g_length="138"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="136" r_length="136" r_score="0.942"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="65690" i_stop="66849" i_length="1160">
            <donor d_prob="1.000" d_score="0.98"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="66850" g_stop="67021" g_length="172"/>
          <reference_exon_boundary r_type="cDNA" r_start="137" r_stop="308" r_length="172" r_score="0.983"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="67022" i_stop="67764" i_length="743">
            <donor d_prob="0.994" d_score="0.96"/>
            <acceptor a_prob="0.987" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="67765" g_stop="67938" g_length="174"/>
          <reference_exon_boundary r_type="cDNA" r_start="309" r_stop="482" r_length="174" r_score="0.994"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0236E02.1" gen_strand="+" ref_id="SGN-E445791" ref_strand="+">
        <total_alignment_score>0.975</total_alignment_score>
        <cumulative_length_of_scored_exons>484</cumulative_length_of_scored_exons>
        <coverage percentage="1.004" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0236E02.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E445791" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="65552" e_stop="65689"/>
          <exon e_start="66850" e_stop="67021"/>
          <exon e_start="67765" e_stop="67938"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTCTCTCTGTTTTTAGTAAGTACGAAACCCTTTTCTGTAAATCCAAAAAAAATTCCGATGGCGATGAGGCGTGTAGCTTCTACAGCAGCTCGTGCTATTGCTTCACCTTCATCCTTAGTTTTTACCAGAGAACTTCAGGTAACTAGCCATTTCTCCTCAATAGCCACTTTTTGTTGCTTTTGTTTTATATGACCTAGTTTTCGCCCTTTGATGAATTATCGGAAACCGGCACGGATCAACTCCGATTTTTCGAGAATCAAGTGAGTTGGAGATTGGAACAGAGGAAACTAAAGGAATTTAACCGTGTAAAGGAAAAAATTAAACACACTGTATTTGGTGCTCTACCCCTCGTCTCTTCTTTTTGGCTTTCCCCGTACTCTACACACCAAATGAAATGGCTCGGATATGAAAGGACTAATAACTTTTCAGTTTTCATTACTGCGTCCTTTTTTAAGCTTTCAGTTTTAATTTGCGTGAATATACCTAATTTTTATTAGGGTAGAGTTATATGTTTCAAATTAAATTGCTACCAAGTTAAATTTAAGAATGTTACATAAATTTAGAGACGGCAAGTTTATATACCAAGAAGGGTACTCCTTCATCCACAGAGAAACGGTGTCCAGTTCGAGTATGGGCGTGAATCTAGATATAGTTAATTCCAATGCAGATATCAGACATCGAGTGAGGAAAAAAAAGATTTTATTAATTTGTTATTTTTAGGTTGCTTTTCCTTTAACTGAAAATCTAACCCGGCAGGACCACAACAGTTCTTTTCCGATCATTACTAATGATACTTGATTTTCACGTGCGATTTCTGATATTTTTATACGGAGTAGGTGAAGAGTGAAATGTTTCACGGGTCTCAAGGACAATGGCAGCAGTGCTTCATTTTTTTTTGCATCTTCACGTGCTATATTATTACTTTGTTTATACTAGTTCGACTTGGAAAATCTTTTCATATTCAGTTGTCTGGGGAATAAATAAGATATTTCTTATTTTTTGATTAAAAAAAGAAGAAGATATTTCTTATTTAAAGAAGTGACAAATTGTACTAACTCATTTACCATGCCTAATATATTATATGTGACAATGATGATTTTTTTTAACTATTAATTGTTAGTTTGGACAAAAATGATCAAAGCAAGTATATTGAATAATGCTTATTTCTTGCCAACTGGTGCATCTACGAGATTATAGGAGTTGGATTATAATTTTAGCACATCCAGCATGCTTATATGACCTTAAAATATTCATGTATATTCTGTCCACTCACCTTTTATTTCTTCATTATTTTACAGGCTTCCCCTGGCCCCAAAAAGATTGTGGGTGTTTTCTACAAAGCAAATGAATATGCTGAAATGAACCCCAACTTTTTGGGCTGTGCAGAAAATGCCTTGGGGATACGTGAATGGTTAGAGTCTAAAGGTCATCAGTACATAGTCACTCCTGACAAAGAAGGACCAGATTGTGGTTAGTTCCTGCTAATCTATAATCTCTCATGTTCTATCCATTATCCCACTGAAGCCTATGCATTTCTAAAGATAATTTCTTTACCCTTCATGCTTGTACAACTAAACACATCTTAAAAGGAGTATTTTTGCATTTAAAACATGCATATATGTGCTGAAGTTTTTTAAAAATATATGGCTCACGTGAGGAGAATATAACGGTCATAGCAGGAACATTTATTTAGATAAAGAGCAAAGCAAAGTAAACAATATTTGCTTTGTTAGTGTTGGTCCTTTGCTGCTAGTGAATTATGATCAGGACATTGTGAGGTAGTTTCTTGCAGGAGGGAAAAAAAGAGTGTATTTTACCTTGATATACAGGTGTGCATTTGCAAAACGTCTATACTTCAGGACTCAGGTGTAAGTTGTACTAGTTTGATAAGACTATGGCTAAATTTTGTAATTTAAACAAGGATTTATCAAAGTCGCAGGGGCTTGTTTAGTTGTTGAGTAGAGTGCACACATGGATGCTTTAGTGATTTTCTGATGGATGACATGCTTAGTGTAAATCCTTGCTTATTAGTATCTTTTATCATGAGAAAGAATGGTGCCCTAGTCTGACACACAAACTACTCTGTGTCTTAGTTTTTCACTGTTGAATCCTTTACTATGCTCTATGCAAAGAAATTTCTCCTGAGCTAAAGTTTTTGAGTGTGTCCATCTATAATAGCTTCTTTTTTTTTTCCCATGACTTTCTCTCTGCAGAGCTTGAGAAACACATTCCTGATCTCCATGTGTTGATTTCGACCCCTTTTCATCCTGCCTATGTCACGGCTGAAAGGATCAAGAAGGCAAAAAATCTACAACTTCTGCTGACAGCTGGAATTGGATCAGATCATGTTGATCTGAAAGCTGCTGCTGCTGCTGGATTGACAGTAG</genome_strand>
        <mrna_strand>TTCTCTCTGTTTTTACCAAGTACAAAACCCTTTGCTGTAAATCC--AAAAAATTCCGATGGCGATGAGTCGTGTAGCTTCTACAGCAGCTCGTGCTATTACTTCACCTTCATCCTTAGTTTTTACCAGAGAACTTCAG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCTTCCCCTGGCCCCAAAAAGATTGTGGGTGTTTTCTACAAAGCAAATGAATATGCTGAAATGAACCCCAACTTTTTGGGCTGTGCAGAAAATGCCTTGGGGATACGTGAATGGTTAGAATCTAAAGGTCATCAGTACATAGTCACTCCTGACAAAGAAAGACCGGATTGTG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGCTTGAGAAACACATTCCTGATCTCCATGTGTTGATTTCGACCCCTTTTCATCCTGCCTATGTCACGGCTGAAAGGATCAAGAAGGCAAAAAATCTACAACTACTGCTGACAGCTGGAATTGGATCAGATCATGTTGATCTGAAAGCTGCTGCTGCTGCTGGATTGACAGTAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0236E02-u8qcS/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E248671" ref_strand="+" ref_description="SGN-E248671 [cLEF-58-K15]">
      <seq>ttctctctgtttttagtaagtacgaaacccttttctgtaaatccaaaaaaaattccgatggcgatgaggcgtgtagcttctacagcagctcgtgctattgcttcaccttcatccttagtttttaccagagaacttcaggtaactagccatttctcctcaatagccactttttgttgcttttgttttatatgacctagttttcgccctttgatgaattatcggaaaccggcacggatcaactccgatttttcgagaatcaagtgagttggagattggaacagaggaaactaaaggaatttaaccgtgtaaaggaaaaaattaaacacactgtatttggtgctctacccctcgtctcttctttttggctttccccgtactctacacaccaaatgaaatggctcggatatgaaaggactaataacttttcagttttcattactgcgtccttttttaagctttcagttttaatttgcgtgaatatacctaatttttattagggtagagttatatgtttcaaattaaatt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0236E02-u8qcS/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0236E02.1" temp_strand="+" temp_description="C02HBa0236E02.1  AC215430.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0236E02 sequenced_by:kribb upload_account_name:korea">
        <position start="65252" stop="66376"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="65552" g_stop="66076" g_length="525"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="525" r_length="525" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0236E02.1" gen_strand="+" ref_id="SGN-E248671" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>525</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0236E02.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E248671" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="65552" e_stop="66076"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTCTCTCTGTTTTTAGTAAGTACGAAACCCTTTTCTGTAAATCCAAAAAAAATTCCGATGGCGATGAGGCGTGTAGCTTCTACAGCAGCTCGTGCTATTGCTTCACCTTCATCCTTAGTTTTTACCAGAGAACTTCAGGTAACTAGCCATTTCTCCTCAATAGCCACTTTTTGTTGCTTTTGTTTTATATGACCTAGTTTTCGCCCTTTGATGAATTATCGGAAACCGGCACGGATCAACTCCGATTTTTCGAGAATCAAGTGAGTTGGAGATTGGAACAGAGGAAACTAAAGGAATTTAACCGTGTAAAGGAAAAAATTAAACACACTGTATTTGGTGCTCTACCCCTCGTCTCTTCTTTTTGGCTTTCCCCGTACTCTACACACCAAATGAAATGGCTCGGATATGAAAGGACTAATAACTTTTCAGTTTTCATTACTGCGTCCTTTTTTAAGCTTTCAGTTTTAATTTGCGTGAATATACCTAATTTTTATTAGGGTAGAGTTATATGTTTCAAATTAAATT</genome_strand>
        <mrna_strand>TTCTCTCTGTTTTTAGTAAGTACGAAACCCTTTTCTGTAAATCCAAAAAAAATTCCGATGGCGATGAGGCGTGTAGCTTCTACAGCAGCTCGTGCTATTGCTTCACCTTCATCCTTAGTTTTTACCAGAGAACTTCAGGTAACTAGCCATTTCTCCTCAATAGCCACTTTTTGTTGCTTTTGTTTTATATGACCTAGTTTTCGCCCTTTGATGAATTATCGGAAACCGGCACGGATCAACTCCGATTTTTCGAGAATCAAGTGAGTTGGAGATTGGAACAGAGGAAACTAAAGGAATTTAACCGTGTAAAGGAAAAAATTAAACACACTGTATTTGGTGCTCTACCCCTCGTCTCTTCTTTTTGGCTTTCCCCGTACTCTACACACCAAATGAAATGGCTCGGATATGAAAGGACTAATAACTTTTCAGTTTTCATTACTGCGTCCTTTTTTAAGCTTTCAGTTTTAATTTGCGTGAATATACCTAATTTTTATTAGGGTAGAGTTATATGTTTCAAATTAAATT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0236E02-u8qcS/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E450450" ref_strand="+" ref_description="SGN-E450450 [cSTS-9-K8]">
      <seq>tctctctgtttttaccaagtacaaaaccctttgctgtaaatccaaaaaattccgatggcgatgagtcgtgtagcttctacagcagctcgtgctattacttcaccttcatccttagtttttaccagagaacttcaggcttcccctggccccaaaaagattgtgggtgttttctacaaagcaaatgaatatgctgaaatgaaccccaactttttgggctgtgcagaaaatgccttggggatacgtgaatggttagaatctaaaggtcatcagtacatagtcactcctgacaaagaaggaccagattgtgagcttgagaaacacattcctgatctccatgtgttgatttcgaccccttttcatcctgcctatgtcacggctgaaaggatcaagaaggcaaaaaatctacaactactgctgacagctggaattggatcagatcatgttgatctgaaagctgctgctgctgctggattgacagtagcagaggtcactggaagcaatactgtctcagttgcggaagatgaactgatgcgaatcttaat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0236E02-u8qcS/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0236E02.1" temp_strand="+" temp_description="C02HBa0236E02.1  AC215430.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0236E02 sequenced_by:kribb upload_account_name:korea">
        <position start="65253" stop="68299"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="65553" g_stop="65689" g_length="137"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="135" r_length="135" r_score="0.942"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="65690" i_stop="66849" i_length="1160">
            <donor d_prob="1.000" d_score="0.98"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="66850" g_stop="67021" g_length="172"/>
          <reference_exon_boundary r_type="cDNA" r_start="136" r_stop="307" r_length="172" r_score="0.994"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="67022" i_stop="67764" i_length="743">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="0.987" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="67765" g_stop="67999" g_length="235"/>
          <reference_exon_boundary r_type="cDNA" r_start="308" r_stop="542" r_length="235" r_score="0.996"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0236E02.1" gen_strand="+" ref_id="SGN-E450450" ref_strand="+">
        <total_alignment_score>0.982</total_alignment_score>
        <cumulative_length_of_scored_exons>544</cumulative_length_of_scored_exons>
        <coverage percentage="1.004" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0236E02.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E450450" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="65553" e_stop="65689"/>
          <exon e_start="66850" e_stop="67021"/>
          <exon e_start="67765" e_stop="67999"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCTCTCTGTTTTTAGTAAGTACGAAACCCTTTTCTGTAAATCCAAAAAAAATTCCGATGGCGATGAGGCGTGTAGCTTCTACAGCAGCTCGTGCTATTGCTTCACCTTCATCCTTAGTTTTTACCAGAGAACTTCAGGTAACTAGCCATTTCTCCTCAATAGCCACTTTTTGTTGCTTTTGTTTTATATGACCTAGTTTTCGCCCTTTGATGAATTATCGGAAACCGGCACGGATCAACTCCGATTTTTCGAGAATCAAGTGAGTTGGAGATTGGAACAGAGGAAACTAAAGGAATTTAACCGTGTAAAGGAAAAAATTAAACACACTGTATTTGGTGCTCTACCCCTCGTCTCTTCTTTTTGGCTTTCCCCGTACTCTACACACCAAATGAAATGGCTCGGATATGAAAGGACTAATAACTTTTCAGTTTTCATTACTGCGTCCTTTTTTAAGCTTTCAGTTTTAATTTGCGTGAATATACCTAATTTTTATTAGGGTAGAGTTATATGTTTCAAATTAAATTGCTACCAAGTTAAATTTAAGAATGTTACATAAATTTAGAGACGGCAAGTTTATATACCAAGAAGGGTACTCCTTCATCCACAGAGAAACGGTGTCCAGTTCGAGTATGGGCGTGAATCTAGATATAGTTAATTCCAATGCAGATATCAGACATCGAGTGAGGAAAAAAAAGATTTTATTAATTTGTTATTTTTAGGTTGCTTTTCCTTTAACTGAAAATCTAACCCGGCAGGACCACAACAGTTCTTTTCCGATCATTACTAATGATACTTGATTTTCACGTGCGATTTCTGATATTTTTATACGGAGTAGGTGAAGAGTGAAATGTTTCACGGGTCTCAAGGACAATGGCAGCAGTGCTTCATTTTTTTTTGCATCTTCACGTGCTATATTATTACTTTGTTTATACTAGTTCGACTTGGAAAATCTTTTCATATTCAGTTGTCTGGGGAATAAATAAGATATTTCTTATTTTTTGATTAAAAAAAGAAGAAGATATTTCTTATTTAAAGAAGTGACAAATTGTACTAACTCATTTACCATGCCTAATATATTATATGTGACAATGATGATTTTTTTTAACTATTAATTGTTAGTTTGGACAAAAATGATCAAAGCAAGTATATTGAATAATGCTTATTTCTTGCCAACTGGTGCATCTACGAGATTATAGGAGTTGGATTATAATTTTAGCACATCCAGCATGCTTATATGACCTTAAAATATTCATGTATATTCTGTCCACTCACCTTTTATTTCTTCATTATTTTACAGGCTTCCCCTGGCCCCAAAAAGATTGTGGGTGTTTTCTACAAAGCAAATGAATATGCTGAAATGAACCCCAACTTTTTGGGCTGTGCAGAAAATGCCTTGGGGATACGTGAATGGTTAGAGTCTAAAGGTCATCAGTACATAGTCACTCCTGACAAAGAAGGACCAGATTGTGGTTAGTTCCTGCTAATCTATAATCTCTCATGTTCTATCCATTATCCCACTGAAGCCTATGCATTTCTAAAGATAATTTCTTTACCCTTCATGCTTGTACAACTAAACACATCTTAAAAGGAGTATTTTTGCATTTAAAACATGCATATATGTGCTGAAGTTTTTTAAAAATATATGGCTCACGTGAGGAGAATATAACGGTCATAGCAGGAACATTTATTTAGATAAAGAGCAAAGCAAAGTAAACAATATTTGCTTTGTTAGTGTTGGTCCTTTGCTGCTAGTGAATTATGATCAGGACATTGTGAGGTAGTTTCTTGCAGGAGGGAAAAAAAGAGTGTATTTTACCTTGATATACAGGTGTGCATTTGCAAAACGTCTATACTTCAGGACTCAGGTGTAAGTTGTACTAGTTTGATAAGACTATGGCTAAATTTTGTAATTTAAACAAGGATTTATCAAAGTCGCAGGGGCTTGTTTAGTTGTTGAGTAGAGTGCACACATGGATGCTTTAGTGATTTTCTGATGGATGACATGCTTAGTGTAAATCCTTGCTTATTAGTATCTTTTATCATGAGAAAGAATGGTGCCCTAGTCTGACACACAAACTACTCTGTGTCTTAGTTTTTCACTGTTGAATCCTTTACTATGCTCTATGCAAAGAAATTTCTCCTGAGCTAAAGTTTTTGAGTGTGTCCATCTATAATAGCTTCTTTTTTTTTTCCCATGACTTTCTCTCTGCAGAGCTTGAGAAACACATTCCTGATCTCCATGTGTTGATTTCGACCCCTTTTCATCCTGCCTATGTCACGGCTGAAAGGATCAAGAAGGCAAAAAATCTACAACTTCTGCTGACAGCTGGAATTGGATCAGATCATGTTGATCTGAAAGCTGCTGCTGCTGCTGGATTGACAGTAGCAGAGGTCACTGGAAGCAATACTGTCTCAGTTGCGGAAGATGAACTGATGCGAATCTTAAT</genome_strand>
        <mrna_strand>TCTCTCTGTTTTTACCAAGTACAAAACCCTTTGCTGTAAATCC--AAAAAATTCCGATGGCGATGAGTCGTGTAGCTTCTACAGCAGCTCGTGCTATTACTTCACCTTCATCCTTAGTTTTTACCAGAGAACTTCAG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCTTCCCCTGGCCCCAAAAAGATTGTGGGTGTTTTCTACAAAGCAAATGAATATGCTGAAATGAACCCCAACTTTTTGGGCTGTGCAGAAAATGCCTTGGGGATACGTGAATGGTTAGAATCTAAAGGTCATCAGTACATAGTCACTCCTGACAAAGAAGGACCAGATTGTG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGCTTGAGAAACACATTCCTGATCTCCATGTGTTGATTTCGACCCCTTTTCATCCTGCCTATGTCACGGCTGAAAGGATCAAGAAGGCAAAAAATCTACAACTACTGCTGACAGCTGGAATTGGATCAGATCATGTTGATCTGAAAGCTGCTGCTGCTGCTGGATTGACAGTAGCAGAGGTCACTGGAAGCAATACTGTCTCAGTTGCGGAAGATGAACTGATGCGAATCTTAAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0236E02-u8qcS/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E449296" ref_strand="+" ref_description="SGN-E449296 [cSTS-6-C13]">
      <seq>tctctctgtttttaccagtacaaaaccctttgctgtaaatccaaaaaattccgatggcgatgagtcgtgtagcttctacagcagctcgtgctattacttcaccttcatccttagtttttaccagagaacttcaggcttcccctggccccaaaaagattgtgggtgttttctacaaagcaaatgaatatgctgaaatgaaccccaactttttgggctgtgcagaaaatgccttggggatacgtgaatggttagaatctaaaggtcatcagtacatagtcactcctgacaaagaaggaccagattgtgagcttgagaaacacattcctgatctccatgtgttgatttcgaccccttttcatcctgcctatgtcacggctgaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0236E02-u8qcS/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0236E02.1" temp_strand="+" temp_description="C02HBa0236E02.1  AC215430.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0236E02 sequenced_by:kribb upload_account_name:korea">
        <position start="65270" stop="68138"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="65553" g_stop="65689" g_length="137"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="134" r_length="134" r_score="0.934"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="65690" i_stop="66849" i_length="1160">
            <donor d_prob="1.000" d_score="0.98"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="66850" g_stop="67021" g_length="172"/>
          <reference_exon_boundary r_type="cDNA" r_start="135" r_stop="306" r_length="172" r_score="0.994"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="67022" i_stop="67764" i_length="743">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="0.987" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="67765" g_stop="67838" g_length="74"/>
          <reference_exon_boundary r_type="cDNA" r_start="307" r_stop="380" r_length="74" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0236E02.1" gen_strand="+" ref_id="SGN-E449296" ref_strand="+">
        <total_alignment_score>0.974</total_alignment_score>
        <cumulative_length_of_scored_exons>383</cumulative_length_of_scored_exons>
        <coverage percentage="1.008" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0236E02.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E449296" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="65553" e_stop="65689"/>
          <exon e_start="66850" e_stop="67021"/>
          <exon e_start="67765" e_stop="67838"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCTCTCTGTTTTTAGTAAGTACGAAACCCTTTTCTGTAAATCCAAAAAAAATTCCGATGGCGATGAGGCGTGTAGCTTCTACAGCAGCTCGTGCTATTGCTTCACCTTCATCCTTAGTTTTTACCAGAGAACTTCAGGTAACTAGCCATTTCTCCTCAATAGCCACTTTTTGTTGCTTTTGTTTTATATGACCTAGTTTTCGCCCTTTGATGAATTATCGGAAACCGGCACGGATCAACTCCGATTTTTCGAGAATCAAGTGAGTTGGAGATTGGAACAGAGGAAACTAAAGGAATTTAACCGTGTAAAGGAAAAAATTAAACACACTGTATTTGGTGCTCTACCCCTCGTCTCTTCTTTTTGGCTTTCCCCGTACTCTACACACCAAATGAAATGGCTCGGATATGAAAGGACTAATAACTTTTCAGTTTTCATTACTGCGTCCTTTTTTAAGCTTTCAGTTTTAATTTGCGTGAATATACCTAATTTTTATTAGGGTAGAGTTATATGTTTCAAATTAAATTGCTACCAAGTTAAATTTAAGAATGTTACATAAATTTAGAGACGGCAAGTTTATATACCAAGAAGGGTACTCCTTCATCCACAGAGAAACGGTGTCCAGTTCGAGTATGGGCGTGAATCTAGATATAGTTAATTCCAATGCAGATATCAGACATCGAGTGAGGAAAAAAAAGATTTTATTAATTTGTTATTTTTAGGTTGCTTTTCCTTTAACTGAAAATCTAACCCGGCAGGACCACAACAGTTCTTTTCCGATCATTACTAATGATACTTGATTTTCACGTGCGATTTCTGATATTTTTATACGGAGTAGGTGAAGAGTGAAATGTTTCACGGGTCTCAAGGACAATGGCAGCAGTGCTTCATTTTTTTTTGCATCTTCACGTGCTATATTATTACTTTGTTTATACTAGTTCGACTTGGAAAATCTTTTCATATTCAGTTGTCTGGGGAATAAATAAGATATTTCTTATTTTTTGATTAAAAAAAGAAGAAGATATTTCTTATTTAAAGAAGTGACAAATTGTACTAACTCATTTACCATGCCTAATATATTATATGTGACAATGATGATTTTTTTTAACTATTAATTGTTAGTTTGGACAAAAATGATCAAAGCAAGTATATTGAATAATGCTTATTTCTTGCCAACTGGTGCATCTACGAGATTATAGGAGTTGGATTATAATTTTAGCACATCCAGCATGCTTATATGACCTTAAAATATTCATGTATATTCTGTCCACTCACCTTTTATTTCTTCATTATTTTACAGGCTTCCCCTGGCCCCAAAAAGATTGTGGGTGTTTTCTACAAAGCAAATGAATATGCTGAAATGAACCCCAACTTTTTGGGCTGTGCAGAAAATGCCTTGGGGATACGTGAATGGTTAGAGTCTAAAGGTCATCAGTACATAGTCACTCCTGACAAAGAAGGACCAGATTGTGGTTAGTTCCTGCTAATCTATAATCTCTCATGTTCTATCCATTATCCCACTGAAGCCTATGCATTTCTAAAGATAATTTCTTTACCCTTCATGCTTGTACAACTAAACACATCTTAAAAGGAGTATTTTTGCATTTAAAACATGCATATATGTGCTGAAGTTTTTTAAAAATATATGGCTCACGTGAGGAGAATATAACGGTCATAGCAGGAACATTTATTTAGATAAAGAGCAAAGCAAAGTAAACAATATTTGCTTTGTTAGTGTTGGTCCTTTGCTGCTAGTGAATTATGATCAGGACATTGTGAGGTAGTTTCTTGCAGGAGGGAAAAAAAGAGTGTATTTTACCTTGATATACAGGTGTGCATTTGCAAAACGTCTATACTTCAGGACTCAGGTGTAAGTTGTACTAGTTTGATAAGACTATGGCTAAATTTTGTAATTTAAACAAGGATTTATCAAAGTCGCAGGGGCTTGTTTAGTTGTTGAGTAGAGTGCACACATGGATGCTTTAGTGATTTTCTGATGGATGACATGCTTAGTGTAAATCCTTGCTTATTAGTATCTTTTATCATGAGAAAGAATGGTGCCCTAGTCTGACACACAAACTACTCTGTGTCTTAGTTTTTCACTGTTGAATCCTTTACTATGCTCTATGCAAAGAAATTTCTCCTGAGCTAAAGTTTTTGAGTGTGTCCATCTATAATAGCTTCTTTTTTTTTTCCCATGACTTTCTCTCTGCAGAGCTTGAGAAACACATTCCTGATCTCCATGTGTTGATTTCGACCCCTTTTCATCCTGCCTATGTCACGGCTGAA</genome_strand>
        <mrna_strand>TCTCTCTGTTTTTA-CCAGTACAAAACCCTTTGCTGTAAATCC--AAAAAATTCCGATGGCGATGAGTCGTGTAGCTTCTACAGCAGCTCGTGCTATTACTTCACCTTCATCCTTAGTTTTTACCAGAGAACTTCAG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCTTCCCCTGGCCCCAAAAAGATTGTGGGTGTTTTCTACAAAGCAAATGAATATGCTGAAATGAACCCCAACTTTTTGGGCTGTGCAGAAAATGCCTTGGGGATACGTGAATGGTTAGAATCTAAAGGTCATCAGTACATAGTCACTCCTGACAAAGAAGGACCAGATTGTG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGCTTGAGAAACACATTCCTGATCTCCATGTGTTGATTTCGACCCCTTTTCATCCTGCCTATGTCACGGCTGAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0236E02-u8qcS/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E459289" ref_strand="+" ref_description="SGN-E459289 [cPRO-27-K22]">
      <seq>ctctgtttttaccaagtacaaaaccctttgctgtaaatccaaaaaattccgatggcgatgagtcgtgtagcttctacagcagctcgtgctattacttcaccttcatccttagtttttaccagagaacttcaggcttcccctggccccaaaaagattgtgggtgttttctacaaagcaaatgaatatgctgaaatgaaccccaactttttgggctgtgcagaaaatgccttggggatacgtgaatggttagaatctaaaggtcatcagtacatagtcactcctgacaaagaaggaccagattgtgagcttgagaaacacattcctgatctccatgtgttgatttcgaccccttttcatcctgcctatgtcacggctgaaaggatcaagaaggcaaaaaatctacaactactgctgacagctggaattggatcagatcatgttgatctgaaagctgctgctgctgctggattgacagtagcagaggtcactggaagcaatactgtctcagttgcggaagatgaactgatgcgaatcttaattcttgtccgaaatttcttgcctggacatcatcaggttatcaatggggagtggaatgttgctgcaattgcgcacagagcttatgatttggaaggcaagactgttggaactgttggtgcaggacgtattggcagacttttactccaacgattgaagccatttaactgtaatctactttaccatgaccgtcttaagatggattctgagctagagaaatcaattgga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0236E02-u8qcS/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0236E02.1" temp_strand="+" temp_description="C02HBa0236E02.1  AC215430.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0236E02 sequenced_by:kribb upload_account_name:korea">
        <position start="65256" stop="68522"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="65556" g_stop="65689" g_length="134"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="132" r_length="132" r_score="0.940"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="65690" i_stop="66849" i_length="1160">
            <donor d_prob="1.000" d_score="0.98"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="66850" g_stop="67021" g_length="172"/>
          <reference_exon_boundary r_type="cDNA" r_start="133" r_stop="304" r_length="172" r_score="0.994"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="67022" i_stop="67764" i_length="743">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="0.987" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="67765" g_stop="68222" g_length="458"/>
          <reference_exon_boundary r_type="cDNA" r_start="305" r_stop="762" r_length="458" r_score="0.987"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0236E02.1" gen_strand="+" ref_id="SGN-E459289" ref_strand="+">
        <total_alignment_score>0.980</total_alignment_score>
        <cumulative_length_of_scored_exons>764</cumulative_length_of_scored_exons>
        <coverage percentage="1.003" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0236E02.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E459289" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="65556" e_stop="65689"/>
          <exon e_start="66850" e_stop="67021"/>
          <exon e_start="67765" e_stop="68222"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTCTGTTTTTAGTAAGTACGAAACCCTTTTCTGTAAATCCAAAAAAAATTCCGATGGCGATGAGGCGTGTAGCTTCTACAGCAGCTCGTGCTATTGCTTCACCTTCATCCTTAGTTTTTACCAGAGAACTTCAGGTAACTAGCCATTTCTCCTCAATAGCCACTTTTTGTTGCTTTTGTTTTATATGACCTAGTTTTCGCCCTTTGATGAATTATCGGAAACCGGCACGGATCAACTCCGATTTTTCGAGAATCAAGTGAGTTGGAGATTGGAACAGAGGAAACTAAAGGAATTTAACCGTGTAAAGGAAAAAATTAAACACACTGTATTTGGTGCTCTACCCCTCGTCTCTTCTTTTTGGCTTTCCCCGTACTCTACACACCAAATGAAATGGCTCGGATATGAAAGGACTAATAACTTTTCAGTTTTCATTACTGCGTCCTTTTTTAAGCTTTCAGTTTTAATTTGCGTGAATATACCTAATTTTTATTAGGGTAGAGTTATATGTTTCAAATTAAATTGCTACCAAGTTAAATTTAAGAATGTTACATAAATTTAGAGACGGCAAGTTTATATACCAAGAAGGGTACTCCTTCATCCACAGAGAAACGGTGTCCAGTTCGAGTATGGGCGTGAATCTAGATATAGTTAATTCCAATGCAGATATCAGACATCGAGTGAGGAAAAAAAAGATTTTATTAATTTGTTATTTTTAGGTTGCTTTTCCTTTAACTGAAAATCTAACCCGGCAGGACCACAACAGTTCTTTTCCGATCATTACTAATGATACTTGATTTTCACGTGCGATTTCTGATATTTTTATACGGAGTAGGTGAAGAGTGAAATGTTTCACGGGTCTCAAGGACAATGGCAGCAGTGCTTCATTTTTTTTTGCATCTTCACGTGCTATATTATTACTTTGTTTATACTAGTTCGACTTGGAAAATCTTTTCATATTCAGTTGTCTGGGGAATAAATAAGATATTTCTTATTTTTTGATTAAAAAAAGAAGAAGATATTTCTTATTTAAAGAAGTGACAAATTGTACTAACTCATTTACCATGCCTAATATATTATATGTGACAATGATGATTTTTTTTAACTATTAATTGTTAGTTTGGACAAAAATGATCAAAGCAAGTATATTGAATAATGCTTATTTCTTGCCAACTGGTGCATCTACGAGATTATAGGAGTTGGATTATAATTTTAGCACATCCAGCATGCTTATATGACCTTAAAATATTCATGTATATTCTGTCCACTCACCTTTTATTTCTTCATTATTTTACAGGCTTCCCCTGGCCCCAAAAAGATTGTGGGTGTTTTCTACAAAGCAAATGAATATGCTGAAATGAACCCCAACTTTTTGGGCTGTGCAGAAAATGCCTTGGGGATACGTGAATGGTTAGAGTCTAAAGGTCATCAGTACATAGTCACTCCTGACAAAGAAGGACCAGATTGTGGTTAGTTCCTGCTAATCTATAATCTCTCATGTTCTATCCATTATCCCACTGAAGCCTATGCATTTCTAAAGATAATTTCTTTACCCTTCATGCTTGTACAACTAAACACATCTTAAAAGGAGTATTTTTGCATTTAAAACATGCATATATGTGCTGAAGTTTTTTAAAAATATATGGCTCACGTGAGGAGAATATAACGGTCATAGCAGGAACATTTATTTAGATAAAGAGCAAAGCAAAGTAAACAATATTTGCTTTGTTAGTGTTGGTCCTTTGCTGCTAGTGAATTATGATCAGGACATTGTGAGGTAGTTTCTTGCAGGAGGGAAAAAAAGAGTGTATTTTACCTTGATATACAGGTGTGCATTTGCAAAACGTCTATACTTCAGGACTCAGGTGTAAGTTGTACTAGTTTGATAAGACTATGGCTAAATTTTGTAATTTAAACAAGGATTTATCAAAGTCGCAGGGGCTTGTTTAGTTGTTGAGTAGAGTGCACACATGGATGCTTTAGTGATTTTCTGATGGATGACATGCTTAGTGTAAATCCTTGCTTATTAGTATCTTTTATCATGAGAAAGAATGGTGCCCTAGTCTGACACACAAACTACTCTGTGTCTTAGTTTTTCACTGTTGAATCCTTTACTATGCTCTATGCAAAGAAATTTCTCCTGAGCTAAAGTTTTTGAGTGTGTCCATCTATAATAGCTTCTTTTTTTTTTCCCATGACTTTCTCTCTGCAGAGCTTGAGAAACACATTCCTGATCTCCATGTGTTGATTTCGACCCCTTTTCATCCTGCCTATGTCACGGCTGAAAGGATCAAGAAGGCAAAAAATCTACAACTTCTGCTGACAGCTGGAATTGGATCAGATCATGTTGATCTGAAAGCTGCTGCTGCTGCTGGATTGACAGTAGCAGAGGTCACTGGAAGCAATACTGTCTCAGTTGCGGAAGATGAACTGATGCGAATCTTAATTCTTGTCCGAAATTTCTTACCTGGACATCATCAGGTTATCAATGGGGAGTGGAATGTTGCTGCAATTGCGCACAGAGCTTATGATTTGGAAGGCAAGACTGTTGGAACTGTTGGTGCAGGACGTATTGGCAGACTTTTACTCCAGCGATTGAAGCCATTTAACTGTAATCTACTTTACCATGACCGTCTTAAGATGGATTCTGAGCTAGAGAATCAAATTGGA</genome_strand>
        <mrna_strand>CTCTGTTTTTACCAAGTACAAAACCCTTTGCTGTAAATCC--AAAAAATTCCGATGGCGATGAGTCGTGTAGCTTCTACAGCAGCTCGTGCTATTACTTCACCTTCATCCTTAGTTTTTACCAGAGAACTTCAG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCTTCCCCTGGCCCCAAAAAGATTGTGGGTGTTTTCTACAAAGCAAATGAATATGCTGAAATGAACCCCAACTTTTTGGGCTGTGCAGAAAATGCCTTGGGGATACGTGAATGGTTAGAATCTAAAGGTCATCAGTACATAGTCACTCCTGACAAAGAAGGACCAGATTGTG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGCTTGAGAAACACATTCCTGATCTCCATGTGTTGATTTCGACCCCTTTTCATCCTGCCTATGTCACGGCTGAAAGGATCAAGAAGGCAAAAAATCTACAACTACTGCTGACAGCTGGAATTGGATCAGATCATGTTGATCTGAAAGCTGCTGCTGCTGCTGGATTGACAGTAGCAGAGGTCACTGGAAGCAATACTGTCTCAGTTGCGGAAGATGAACTGATGCGAATCTTAATTCTTGTCCGAAATTTCTTGCCTGGACATCATCAGGTTATCAATGGGGAGTGGAATGTTGCTGCAATTGCGCACAGAGCTTATGATTTGGAAGGCAAGACTGTTGGAACTGTTGGTGCAGGACGTATTGGCAGACTTTTACTCCAACGATTGAAGCCATTTAACTGTAATCTACTTTACCATGACCGTCTTAAGATGGATTCTGAGCTAGAGAAATCAATTGGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0236E02-u8qcS/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E405995" ref_strand="+" ref_description="SGN-E405995 [PPI-2-G12]">
      <seq>ctctgattttaccaagtacaaaaccctttgctgtaaatccaaaaaattccgatggcgacgagtcgtgtagcttctacagcagctcgtgctattacttcaccttaatccttagtttttaccagagaacttcacgcttcccctggccccaaaaagattgtgggtgttttctacaaagcaaatgaatatgctgaaatgaaccccaactttttgggctgtgcagaaaatgccttggggatacgtgaatggttagaatctaaaggtcatcagtacatagtcactcctgacaaagaacgaccagattgtgagcttgagaaacacattcctgatctccatgtgttgatttcgaccccttttcatcctgcctatgtcacggctgaaaggatcaagaacgcaaaaaatctacaactactgctgacaactggaattggatcagatcatgctgatctgaaagctgctgctgctgctggattgacagtatcagaggtcactggaagcaatactgtctcagttgcggaagatgaactgatgcgaatcttaattcttgtccgaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0236E02-u8qcS/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0236E02.1" temp_strand="+" temp_description="C02HBa0236E02.1  AC215430.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0236E02 sequenced_by:kribb upload_account_name:korea">
        <position start="65256" stop="68310"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="65556" g_stop="65689" g_length="134"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="132" r_length="132" r_score="0.910"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="65690" i_stop="66849" i_length="1160">
            <donor d_prob="1.000" d_score="0.94"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="66850" g_stop="67021" g_length="172"/>
          <reference_exon_boundary r_type="cDNA" r_start="133" r_stop="304" r_length="172" r_score="0.988"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="67022" i_stop="67764" i_length="743">
            <donor d_prob="0.994" d_score="0.98"/>
            <acceptor a_prob="0.987" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="67765" g_stop="68010" g_length="246"/>
          <reference_exon_boundary r_type="cDNA" r_start="305" r_stop="550" r_length="246" r_score="0.980"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0236E02.1" gen_strand="+" ref_id="SGN-E405995" ref_strand="+">
        <total_alignment_score>0.966</total_alignment_score>
        <cumulative_length_of_scored_exons>552</cumulative_length_of_scored_exons>
        <coverage percentage="1.004" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0236E02.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E405995" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="65556" e_stop="65689"/>
          <exon e_start="66850" e_stop="67021"/>
          <exon e_start="67765" e_stop="68010"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTCTGTTTTTAGTAAGTACGAAACCCTTTTCTGTAAATCCAAAAAAAATTCCGATGGCGATGAGGCGTGTAGCTTCTACAGCAGCTCGTGCTATTGCTTCACCTTCATCCTTAGTTTTTACCAGAGAACTTCAGGTAACTAGCCATTTCTCCTCAATAGCCACTTTTTGTTGCTTTTGTTTTATATGACCTAGTTTTCGCCCTTTGATGAATTATCGGAAACCGGCACGGATCAACTCCGATTTTTCGAGAATCAAGTGAGTTGGAGATTGGAACAGAGGAAACTAAAGGAATTTAACCGTGTAAAGGAAAAAATTAAACACACTGTATTTGGTGCTCTACCCCTCGTCTCTTCTTTTTGGCTTTCCCCGTACTCTACACACCAAATGAAATGGCTCGGATATGAAAGGACTAATAACTTTTCAGTTTTCATTACTGCGTCCTTTTTTAAGCTTTCAGTTTTAATTTGCGTGAATATACCTAATTTTTATTAGGGTAGAGTTATATGTTTCAAATTAAATTGCTACCAAGTTAAATTTAAGAATGTTACATAAATTTAGAGACGGCAAGTTTATATACCAAGAAGGGTACTCCTTCATCCACAGAGAAACGGTGTCCAGTTCGAGTATGGGCGTGAATCTAGATATAGTTAATTCCAATGCAGATATCAGACATCGAGTGAGGAAAAAAAAGATTTTATTAATTTGTTATTTTTAGGTTGCTTTTCCTTTAACTGAAAATCTAACCCGGCAGGACCACAACAGTTCTTTTCCGATCATTACTAATGATACTTGATTTTCACGTGCGATTTCTGATATTTTTATACGGAGTAGGTGAAGAGTGAAATGTTTCACGGGTCTCAAGGACAATGGCAGCAGTGCTTCATTTTTTTTTGCATCTTCACGTGCTATATTATTACTTTGTTTATACTAGTTCGACTTGGAAAATCTTTTCATATTCAGTTGTCTGGGGAATAAATAAGATATTTCTTATTTTTTGATTAAAAAAAGAAGAAGATATTTCTTATTTAAAGAAGTGACAAATTGTACTAACTCATTTACCATGCCTAATATATTATATGTGACAATGATGATTTTTTTTAACTATTAATTGTTAGTTTGGACAAAAATGATCAAAGCAAGTATATTGAATAATGCTTATTTCTTGCCAACTGGTGCATCTACGAGATTATAGGAGTTGGATTATAATTTTAGCACATCCAGCATGCTTATATGACCTTAAAATATTCATGTATATTCTGTCCACTCACCTTTTATTTCTTCATTATTTTACAGGCTTCCCCTGGCCCCAAAAAGATTGTGGGTGTTTTCTACAAAGCAAATGAATATGCTGAAATGAACCCCAACTTTTTGGGCTGTGCAGAAAATGCCTTGGGGATACGTGAATGGTTAGAGTCTAAAGGTCATCAGTACATAGTCACTCCTGACAAAGAAGGACCAGATTGTGGTTAGTTCCTGCTAATCTATAATCTCTCATGTTCTATCCATTATCCCACTGAAGCCTATGCATTTCTAAAGATAATTTCTTTACCCTTCATGCTTGTACAACTAAACACATCTTAAAAGGAGTATTTTTGCATTTAAAACATGCATATATGTGCTGAAGTTTTTTAAAAATATATGGCTCACGTGAGGAGAATATAACGGTCATAGCAGGAACATTTATTTAGATAAAGAGCAAAGCAAAGTAAACAATATTTGCTTTGTTAGTGTTGGTCCTTTGCTGCTAGTGAATTATGATCAGGACATTGTGAGGTAGTTTCTTGCAGGAGGGAAAAAAAGAGTGTATTTTACCTTGATATACAGGTGTGCATTTGCAAAACGTCTATACTTCAGGACTCAGGTGTAAGTTGTACTAGTTTGATAAGACTATGGCTAAATTTTGTAATTTAAACAAGGATTTATCAAAGTCGCAGGGGCTTGTTTAGTTGTTGAGTAGAGTGCACACATGGATGCTTTAGTGATTTTCTGATGGATGACATGCTTAGTGTAAATCCTTGCTTATTAGTATCTTTTATCATGAGAAAGAATGGTGCCCTAGTCTGACACACAAACTACTCTGTGTCTTAGTTTTTCACTGTTGAATCCTTTACTATGCTCTATGCAAAGAAATTTCTCCTGAGCTAAAGTTTTTGAGTGTGTCCATCTATAATAGCTTCTTTTTTTTTTCCCATGACTTTCTCTCTGCAGAGCTTGAGAAACACATTCCTGATCTCCATGTGTTGATTTCGACCCCTTTTCATCCTGCCTATGTCACGGCTGAAAGGATCAAGAAGGCAAAAAATCTACAACTTCTGCTGACAGCTGGAATTGGATCAGATCATGTTGATCTGAAAGCTGCTGCTGCTGCTGGATTGACAGTAGCAGAGGTCACTGGAAGCAATACTGTCTCAGTTGCGGAAGATGAACTGATGCGAATCTTAATTCTTGTCCGAA</genome_strand>
        <mrna_strand>CTCTGATTTTACCAAGTACAAAACCCTTTGCTGTAAATCC--AAAAAATTCCGATGGCGACGAGTCGTGTAGCTTCTACAGCAGCTCGTGCTATTACTTCACCTTAATCCTTAGTTTTTACCAGAGAACTTCAC........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCTTCCCCTGGCCCCAAAAAGATTGTGGGTGTTTTCTACAAAGCAAATGAATATGCTGAAATGAACCCCAACTTTTTGGGCTGTGCAGAAAATGCCTTGGGGATACGTGAATGGTTAGAATCTAAAGGTCATCAGTACATAGTCACTCCTGACAAAGAACGACCAGATTGTG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGCTTGAGAAACACATTCCTGATCTCCATGTGTTGATTTCGACCCCTTTTCATCCTGCCTATGTCACGGCTGAAAGGATCAAGAACGCAAAAAATCTACAACTACTGCTGACAACTGGAATTGGATCAGATCATGCTGATCTGAAAGCTGCTGCTGCTGCTGGATTGACAGTATCAGAGGTCACTGGAAGCAATACTGTCTCAGTTGCGGAAGATGAACTGATGCGAATCTTAATTCTTGTCCGAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0236E02-u8qcS/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E440143" ref_strand="+" ref_description="SGN-E440143 [cSTA-15-M19]">
      <seq>ctctgtttttaccaagtacaaaaccctttgctgtaaatccaaaaaattccgatggcgatgagtcgtgtagcttctacagcagctcgtgctattacttcaccttcatccttagtttttaccagagaacttcaggcttcccctggccccaaaaagattgtgggtgttttctacaaagcaaatgaatatgctgaaatgaaccccaactttttgggctgtgcagaaaatgccttggggatacgtgaatggttagaatctaaaggtcatcagtacatagtcactcctgacaaagaaggaccggattgtgagcttgagaaacacattcctgatctccatgtgttgatttcgaccccttttcatcctgcctatgttacggctgaaaggatcaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0236E02-u8qcS/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0236E02.1" temp_strand="+" temp_description="C02HBa0236E02.1  AC215430.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0236E02 sequenced_by:kribb upload_account_name:korea">
        <position start="65256" stop="68146"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="65556" g_stop="65689" g_length="134"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="132" r_length="132" r_score="0.940"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="65690" i_stop="66849" i_length="1160">
            <donor d_prob="1.000" d_score="0.98"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="66850" g_stop="67021" g_length="172"/>
          <reference_exon_boundary r_type="cDNA" r_start="133" r_stop="304" r_length="172" r_score="0.988"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="67022" i_stop="67764" i_length="743">
            <donor d_prob="0.994" d_score="0.98"/>
            <acceptor a_prob="0.987" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="67765" g_stop="67846" g_length="82"/>
          <reference_exon_boundary r_type="cDNA" r_start="305" r_stop="386" r_length="82" r_score="0.988"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0236E02.1" gen_strand="+" ref_id="SGN-E440143" ref_strand="+">
        <total_alignment_score>0.972</total_alignment_score>
        <cumulative_length_of_scored_exons>388</cumulative_length_of_scored_exons>
        <coverage percentage="1.005" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0236E02.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E440143" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="65556" e_stop="65689"/>
          <exon e_start="66850" e_stop="67021"/>
          <exon e_start="67765" e_stop="67846"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTCTGTTTTTAGTAAGTACGAAACCCTTTTCTGTAAATCCAAAAAAAATTCCGATGGCGATGAGGCGTGTAGCTTCTACAGCAGCTCGTGCTATTGCTTCACCTTCATCCTTAGTTTTTACCAGAGAACTTCAGGTAACTAGCCATTTCTCCTCAATAGCCACTTTTTGTTGCTTTTGTTTTATATGACCTAGTTTTCGCCCTTTGATGAATTATCGGAAACCGGCACGGATCAACTCCGATTTTTCGAGAATCAAGTGAGTTGGAGATTGGAACAGAGGAAACTAAAGGAATTTAACCGTGTAAAGGAAAAAATTAAACACACTGTATTTGGTGCTCTACCCCTCGTCTCTTCTTTTTGGCTTTCCCCGTACTCTACACACCAAATGAAATGGCTCGGATATGAAAGGACTAATAACTTTTCAGTTTTCATTACTGCGTCCTTTTTTAAGCTTTCAGTTTTAATTTGCGTGAATATACCTAATTTTTATTAGGGTAGAGTTATATGTTTCAAATTAAATTGCTACCAAGTTAAATTTAAGAATGTTACATAAATTTAGAGACGGCAAGTTTATATACCAAGAAGGGTACTCCTTCATCCACAGAGAAACGGTGTCCAGTTCGAGTATGGGCGTGAATCTAGATATAGTTAATTCCAATGCAGATATCAGACATCGAGTGAGGAAAAAAAAGATTTTATTAATTTGTTATTTTTAGGTTGCTTTTCCTTTAACTGAAAATCTAACCCGGCAGGACCACAACAGTTCTTTTCCGATCATTACTAATGATACTTGATTTTCACGTGCGATTTCTGATATTTTTATACGGAGTAGGTGAAGAGTGAAATGTTTCACGGGTCTCAAGGACAATGGCAGCAGTGCTTCATTTTTTTTTGCATCTTCACGTGCTATATTATTACTTTGTTTATACTAGTTCGACTTGGAAAATCTTTTCATATTCAGTTGTCTGGGGAATAAATAAGATATTTCTTATTTTTTGATTAAAAAAAGAAGAAGATATTTCTTATTTAAAGAAGTGACAAATTGTACTAACTCATTTACCATGCCTAATATATTATATGTGACAATGATGATTTTTTTTAACTATTAATTGTTAGTTTGGACAAAAATGATCAAAGCAAGTATATTGAATAATGCTTATTTCTTGCCAACTGGTGCATCTACGAGATTATAGGAGTTGGATTATAATTTTAGCACATCCAGCATGCTTATATGACCTTAAAATATTCATGTATATTCTGTCCACTCACCTTTTATTTCTTCATTATTTTACAGGCTTCCCCTGGCCCCAAAAAGATTGTGGGTGTTTTCTACAAAGCAAATGAATATGCTGAAATGAACCCCAACTTTTTGGGCTGTGCAGAAAATGCCTTGGGGATACGTGAATGGTTAGAGTCTAAAGGTCATCAGTACATAGTCACTCCTGACAAAGAAGGACCAGATTGTGGTTAGTTCCTGCTAATCTATAATCTCTCATGTTCTATCCATTATCCCACTGAAGCCTATGCATTTCTAAAGATAATTTCTTTACCCTTCATGCTTGTACAACTAAACACATCTTAAAAGGAGTATTTTTGCATTTAAAACATGCATATATGTGCTGAAGTTTTTTAAAAATATATGGCTCACGTGAGGAGAATATAACGGTCATAGCAGGAACATTTATTTAGATAAAGAGCAAAGCAAAGTAAACAATATTTGCTTTGTTAGTGTTGGTCCTTTGCTGCTAGTGAATTATGATCAGGACATTGTGAGGTAGTTTCTTGCAGGAGGGAAAAAAAGAGTGTATTTTACCTTGATATACAGGTGTGCATTTGCAAAACGTCTATACTTCAGGACTCAGGTGTAAGTTGTACTAGTTTGATAAGACTATGGCTAAATTTTGTAATTTAAACAAGGATTTATCAAAGTCGCAGGGGCTTGTTTAGTTGTTGAGTAGAGTGCACACATGGATGCTTTAGTGATTTTCTGATGGATGACATGCTTAGTGTAAATCCTTGCTTATTAGTATCTTTTATCATGAGAAAGAATGGTGCCCTAGTCTGACACACAAACTACTCTGTGTCTTAGTTTTTCACTGTTGAATCCTTTACTATGCTCTATGCAAAGAAATTTCTCCTGAGCTAAAGTTTTTGAGTGTGTCCATCTATAATAGCTTCTTTTTTTTTTCCCATGACTTTCTCTCTGCAGAGCTTGAGAAACACATTCCTGATCTCCATGTGTTGATTTCGACCCCTTTTCATCCTGCCTATGTCACGGCTGAAAGGATCAA</genome_strand>
        <mrna_strand>CTCTGTTTTTACCAAGTACAAAACCCTTTGCTGTAAATCC--AAAAAATTCCGATGGCGATGAGTCGTGTAGCTTCTACAGCAGCTCGTGCTATTACTTCACCTTCATCCTTAGTTTTTACCAGAGAACTTCAG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCTTCCCCTGGCCCCAAAAAGATTGTGGGTGTTTTCTACAAAGCAAATGAATATGCTGAAATGAACCCCAACTTTTTGGGCTGTGCAGAAAATGCCTTGGGGATACGTGAATGGTTAGAATCTAAAGGTCATCAGTACATAGTCACTCCTGACAAAGAAGGACCGGATTGTG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGCTTGAGAAACACATTCCTGATCTCCATGTGTTGATTTCGACCCCTTTTCATCCTGCCTATGTTACGGCTGAAAGGATCAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0236E02-u8qcS/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E317754" ref_strand="+" ref_description="SGN-E317754 [cTOA-30-M11]">
      <seq>tctgtttttagtaagtacgaaacccttttctgtaaatccaaaaaaaattccgatggcgatgaggcgtgtagcttctacagcagctcgtgctattgcttcaccttcatccttagtttttaccagagaacttcaggcttcccctggccccaaaaagattgtgggtgttttctacaaagcaaatgaatatgctgaaatgaaccccaactttttgggctgtgcagaaaatgccttggggatacgtgaatggttagagtctaaaggtcatcagtacatagtcactcctgacaaagaaggaccagattgtgagcttgagaaacacattcctgatctccatgtgttgatttcgaccccttttcatcctgcctatgtcacggctgaaaggatcaagaaggcaaaaaatctacaacttctgctgacagctggaattggatcagatcatgttgatctgaaagctgctgctgctgctggattgacagtagcagaggtcactggaagcaatactgtctcagttgcggaagatgaactgatgcgaatcttaattcttgtccgaaatttcttacctggacatcatcaggttatcaatgggggagtggaatgttgctgcaattgcgcacagagcttatgatttggaaggcaagactgttggaactgttggtgcaggacgtattggcagacttttactccagcgattggagccatttaactggtatctactttaccatgaccgtctttagatggattctgagctagagatcaaattgga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0236E02-u8qcS/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0236E02.1" temp_strand="+" temp_description="C02HBa0236E02.1  AC215430.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0236E02 sequenced_by:kribb upload_account_name:korea">
        <position start="65257" stop="68522"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="65557" g_stop="65689" g_length="133"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="133" r_length="133" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="65690" i_stop="66849" i_length="1160">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="66850" g_stop="67021" g_length="172"/>
          <reference_exon_boundary r_type="cDNA" r_start="134" r_stop="305" r_length="172" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="67022" i_stop="67764" i_length="743">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="0.987" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="67765" g_stop="68222" g_length="458"/>
          <reference_exon_boundary r_type="cDNA" r_start="306" r_stop="763" r_length="458" r_score="0.985"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0236E02.1" gen_strand="+" ref_id="SGN-E317754" ref_strand="+">
        <total_alignment_score>0.991</total_alignment_score>
        <cumulative_length_of_scored_exons>763</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0236E02.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E317754" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="65557" e_stop="65689"/>
          <exon e_start="66850" e_stop="67021"/>
          <exon e_start="67765" e_stop="68222"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCTGTTTTTAGTAAGTACGAAACCCTTTTCTGTAAATCCAAAAAAAATTCCGATGGCGATGAGGCGTGTAGCTTCTACAGCAGCTCGTGCTATTGCTTCACCTTCATCCTTAGTTTTTACCAGAGAACTTCAGGTAACTAGCCATTTCTCCTCAATAGCCACTTTTTGTTGCTTTTGTTTTATATGACCTAGTTTTCGCCCTTTGATGAATTATCGGAAACCGGCACGGATCAACTCCGATTTTTCGAGAATCAAGTGAGTTGGAGATTGGAACAGAGGAAACTAAAGGAATTTAACCGTGTAAAGGAAAAAATTAAACACACTGTATTTGGTGCTCTACCCCTCGTCTCTTCTTTTTGGCTTTCCCCGTACTCTACACACCAAATGAAATGGCTCGGATATGAAAGGACTAATAACTTTTCAGTTTTCATTACTGCGTCCTTTTTTAAGCTTTCAGTTTTAATTTGCGTGAATATACCTAATTTTTATTAGGGTAGAGTTATATGTTTCAAATTAAATTGCTACCAAGTTAAATTTAAGAATGTTACATAAATTTAGAGACGGCAAGTTTATATACCAAGAAGGGTACTCCTTCATCCACAGAGAAACGGTGTCCAGTTCGAGTATGGGCGTGAATCTAGATATAGTTAATTCCAATGCAGATATCAGACATCGAGTGAGGAAAAAAAAGATTTTATTAATTTGTTATTTTTAGGTTGCTTTTCCTTTAACTGAAAATCTAACCCGGCAGGACCACAACAGTTCTTTTCCGATCATTACTAATGATACTTGATTTTCACGTGCGATTTCTGATATTTTTATACGGAGTAGGTGAAGAGTGAAATGTTTCACGGGTCTCAAGGACAATGGCAGCAGTGCTTCATTTTTTTTTGCATCTTCACGTGCTATATTATTACTTTGTTTATACTAGTTCGACTTGGAAAATCTTTTCATATTCAGTTGTCTGGGGAATAAATAAGATATTTCTTATTTTTTGATTAAAAAAAGAAGAAGATATTTCTTATTTAAAGAAGTGACAAATTGTACTAACTCATTTACCATGCCTAATATATTATATGTGACAATGATGATTTTTTTTAACTATTAATTGTTAGTTTGGACAAAAATGATCAAAGCAAGTATATTGAATAATGCTTATTTCTTGCCAACTGGTGCATCTACGAGATTATAGGAGTTGGATTATAATTTTAGCACATCCAGCATGCTTATATGACCTTAAAATATTCATGTATATTCTGTCCACTCACCTTTTATTTCTTCATTATTTTACAGGCTTCCCCTGGCCCCAAAAAGATTGTGGGTGTTTTCTACAAAGCAAATGAATATGCTGAAATGAACCCCAACTTTTTGGGCTGTGCAGAAAATGCCTTGGGGATACGTGAATGGTTAGAGTCTAAAGGTCATCAGTACATAGTCACTCCTGACAAAGAAGGACCAGATTGTGGTTAGTTCCTGCTAATCTATAATCTCTCATGTTCTATCCATTATCCCACTGAAGCCTATGCATTTCTAAAGATAATTTCTTTACCCTTCATGCTTGTACAACTAAACACATCTTAAAAGGAGTATTTTTGCATTTAAAACATGCATATATGTGCTGAAGTTTTTTAAAAATATATGGCTCACGTGAGGAGAATATAACGGTCATAGCAGGAACATTTATTTAGATAAAGAGCAAAGCAAAGTAAACAATATTTGCTTTGTTAGTGTTGGTCCTTTGCTGCTAGTGAATTATGATCAGGACATTGTGAGGTAGTTTCTTGCAGGAGGGAAAAAAAGAGTGTATTTTACCTTGATATACAGGTGTGCATTTGCAAAACGTCTATACTTCAGGACTCAGGTGTAAGTTGTACTAGTTTGATAAGACTATGGCTAAATTTTGTAATTTAAACAAGGATTTATCAAAGTCGCAGGGGCTTGTTTAGTTGTTGAGTAGAGTGCACACATGGATGCTTTAGTGATTTTCTGATGGATGACATGCTTAGTGTAAATCCTTGCTTATTAGTATCTTTTATCATGAGAAAGAATGGTGCCCTAGTCTGACACACAAACTACTCTGTGTCTTAGTTTTTCACTGTTGAATCCTTTACTATGCTCTATGCAAAGAAATTTCTCCTGAGCTAAAGTTTTTGAGTGTGTCCATCTATAATAGCTTCTTTTTTTTTTCCCATGACTTTCTCTCTGCAGAGCTTGAGAAACACATTCCTGATCTCCATGTGTTGATTTCGACCCCTTTTCATCCTGCCTATGTCACGGCTGAAAGGATCAAGAAGGCAAAAAATCTACAACTTCTGCTGACAGCTGGAATTGGATCAGATCATGTTGATCTGAAAGCTGCTGCTGCTGCTGGATTGACAGTAGCAGAGGTCACTGGAAGCAATACTGTCTCAGTTGCGGAAGATGAACTGATGCGAATCTTAATTCTTGTCCGAAATTTCTTACCTGGACATCATCAGGTTATCAAT-GGGGAGTGGAATGTTGCTGCAATTGCGCACAGAGCTTATGATTTGGAAGGCAAGACTGTTGGAACTGTTGGTGCAGGACGTATTGGCAGACTTTTACTCCAGCGATTGAAGCCATTTAACTGTAATCTACTTTACCATGACCGTCTTAAGATGGATTCTGAGCTAGAGAATCAAATTGGA</genome_strand>
        <mrna_strand>TCTGTTTTTAGTAAGTACGAAACCCTTTTCTGTAAATCCAAAAAAAATTCCGATGGCGATGAGGCGTGTAGCTTCTACAGCAGCTCGTGCTATTGCTTCACCTTCATCCTTAGTTTTTACCAGAGAACTTCAG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCTTCCCCTGGCCCCAAAAAGATTGTGGGTGTTTTCTACAAAGCAAATGAATATGCTGAAATGAACCCCAACTTTTTGGGCTGTGCAGAAAATGCCTTGGGGATACGTGAATGGTTAGAGTCTAAAGGTCATCAGTACATAGTCACTCCTGACAAAGAAGGACCAGATTGTG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGCTTGAGAAACACATTCCTGATCTCCATGTGTTGATTTCGACCCCTTTTCATCCTGCCTATGTCACGGCTGAAAGGATCAAGAAGGCAAAAAATCTACAACTTCTGCTGACAGCTGGAATTGGATCAGATCATGTTGATCTGAAAGCTGCTGCTGCTGCTGGATTGACAGTAGCAGAGGTCACTGGAAGCAATACTGTCTCAGTTGCGGAAGATGAACTGATGCGAATCTTAATTCTTGTCCGAAATTTCTTACCTGGACATCATCAGGTTATCAATGGGGGAGTGGAATGTTGCTGCAATTGCGCACAGAGCTTATGATTTGGAAGGCAAGACTGTTGGAACTGTTGGTGCAGGACGTATTGGCAGACTTTTACTCCAGCGATTGGAGCCATTTAACTGGTATCTACTTTACCATGACCGTCTTTAGATGGATTCTGAGCTAGAG-ATCAAATTGGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0236E02-u8qcS/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E475356" ref_strand="+" ref_description="SGN-E475356 [cSTB-38-D12]">
      <seq>ctgtttttaccaagtacaaaaccctttgctgtaaatccaaaaaattccgatggcgatgagtcgtgtagcttctacagcagctcgtgctattacttcaccttcatccttagtttttaccagagaacttcaggcttcccctggccccaaaaagattgtgggtgttttctacaaagcaaatgaatatgctgaaatgaaccccaactttttgggctgtgcagaaaatgccttggggatacgtgaatggttagaatctaaaggtcatcagtacatagtcactcctgacaaagaaggaccggattgtgagcttgagaaacacattcctgatctccatgtgttgatttcgaccccttttcatcctgcctatgtcacggctgaaaggatcaagaaggcaaaaaatctacaactactgctgacagctggaattggatcagatcatgttgatctgaaagctgctgctgctgctggattgacagtagcagaggtcactggaagcaatactgtctcagttgcggaagatgaactgatgcgaatcttaattcttgtccgaaatttcttgcctggacatcatcaggttatcaatggggagtggaatgttgctgcaattgcgcacagagcttatga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0236E02-u8qcS/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0236E02.1" temp_strand="+" temp_description="C02HBa0236E02.1  AC215430.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0236E02 sequenced_by:kribb upload_account_name:korea">
        <position start="65258" stop="68383"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="65558" g_stop="65689" g_length="132"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="130" r_length="130" r_score="0.939"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="65690" i_stop="66849" i_length="1160">
            <donor d_prob="1.000" d_score="0.98"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="66850" g_stop="67021" g_length="172"/>
          <reference_exon_boundary r_type="cDNA" r_start="131" r_stop="302" r_length="172" r_score="0.988"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="67022" i_stop="67764" i_length="743">
            <donor d_prob="0.994" d_score="0.98"/>
            <acceptor a_prob="0.987" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="67765" g_stop="68083" g_length="319"/>
          <reference_exon_boundary r_type="cDNA" r_start="303" r_stop="621" r_length="319" r_score="0.994"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0236E02.1" gen_strand="+" ref_id="SGN-E475356" ref_strand="+">
        <total_alignment_score>0.981</total_alignment_score>
        <cumulative_length_of_scored_exons>623</cumulative_length_of_scored_exons>
        <coverage percentage="1.003" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0236E02.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E475356" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="65558" e_stop="65689"/>
          <exon e_start="66850" e_stop="67021"/>
          <exon e_start="67765" e_stop="68083"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTGTTTTTAGTAAGTACGAAACCCTTTTCTGTAAATCCAAAAAAAATTCCGATGGCGATGAGGCGTGTAGCTTCTACAGCAGCTCGTGCTATTGCTTCACCTTCATCCTTAGTTTTTACCAGAGAACTTCAGGTAACTAGCCATTTCTCCTCAATAGCCACTTTTTGTTGCTTTTGTTTTATATGACCTAGTTTTCGCCCTTTGATGAATTATCGGAAACCGGCACGGATCAACTCCGATTTTTCGAGAATCAAGTGAGTTGGAGATTGGAACAGAGGAAACTAAAGGAATTTAACCGTGTAAAGGAAAAAATTAAACACACTGTATTTGGTGCTCTACCCCTCGTCTCTTCTTTTTGGCTTTCCCCGTACTCTACACACCAAATGAAATGGCTCGGATATGAAAGGACTAATAACTTTTCAGTTTTCATTACTGCGTCCTTTTTTAAGCTTTCAGTTTTAATTTGCGTGAATATACCTAATTTTTATTAGGGTAGAGTTATATGTTTCAAATTAAATTGCTACCAAGTTAAATTTAAGAATGTTACATAAATTTAGAGACGGCAAGTTTATATACCAAGAAGGGTACTCCTTCATCCACAGAGAAACGGTGTCCAGTTCGAGTATGGGCGTGAATCTAGATATAGTTAATTCCAATGCAGATATCAGACATCGAGTGAGGAAAAAAAAGATTTTATTAATTTGTTATTTTTAGGTTGCTTTTCCTTTAACTGAAAATCTAACCCGGCAGGACCACAACAGTTCTTTTCCGATCATTACTAATGATACTTGATTTTCACGTGCGATTTCTGATATTTTTATACGGAGTAGGTGAAGAGTGAAATGTTTCACGGGTCTCAAGGACAATGGCAGCAGTGCTTCATTTTTTTTTGCATCTTCACGTGCTATATTATTACTTTGTTTATACTAGTTCGACTTGGAAAATCTTTTCATATTCAGTTGTCTGGGGAATAAATAAGATATTTCTTATTTTTTGATTAAAAAAAGAAGAAGATATTTCTTATTTAAAGAAGTGACAAATTGTACTAACTCATTTACCATGCCTAATATATTATATGTGACAATGATGATTTTTTTTAACTATTAATTGTTAGTTTGGACAAAAATGATCAAAGCAAGTATATTGAATAATGCTTATTTCTTGCCAACTGGTGCATCTACGAGATTATAGGAGTTGGATTATAATTTTAGCACATCCAGCATGCTTATATGACCTTAAAATATTCATGTATATTCTGTCCACTCACCTTTTATTTCTTCATTATTTTACAGGCTTCCCCTGGCCCCAAAAAGATTGTGGGTGTTTTCTACAAAGCAAATGAATATGCTGAAATGAACCCCAACTTTTTGGGCTGTGCAGAAAATGCCTTGGGGATACGTGAATGGTTAGAGTCTAAAGGTCATCAGTACATAGTCACTCCTGACAAAGAAGGACCAGATTGTGGTTAGTTCCTGCTAATCTATAATCTCTCATGTTCTATCCATTATCCCACTGAAGCCTATGCATTTCTAAAGATAATTTCTTTACCCTTCATGCTTGTACAACTAAACACATCTTAAAAGGAGTATTTTTGCATTTAAAACATGCATATATGTGCTGAAGTTTTTTAAAAATATATGGCTCACGTGAGGAGAATATAACGGTCATAGCAGGAACATTTATTTAGATAAAGAGCAAAGCAAAGTAAACAATATTTGCTTTGTTAGTGTTGGTCCTTTGCTGCTAGTGAATTATGATCAGGACATTGTGAGGTAGTTTCTTGCAGGAGGGAAAAAAAGAGTGTATTTTACCTTGATATACAGGTGTGCATTTGCAAAACGTCTATACTTCAGGACTCAGGTGTAAGTTGTACTAGTTTGATAAGACTATGGCTAAATTTTGTAATTTAAACAAGGATTTATCAAAGTCGCAGGGGCTTGTTTAGTTGTTGAGTAGAGTGCACACATGGATGCTTTAGTGATTTTCTGATGGATGACATGCTTAGTGTAAATCCTTGCTTATTAGTATCTTTTATCATGAGAAAGAATGGTGCCCTAGTCTGACACACAAACTACTCTGTGTCTTAGTTTTTCACTGTTGAATCCTTTACTATGCTCTATGCAAAGAAATTTCTCCTGAGCTAAAGTTTTTGAGTGTGTCCATCTATAATAGCTTCTTTTTTTTTTCCCATGACTTTCTCTCTGCAGAGCTTGAGAAACACATTCCTGATCTCCATGTGTTGATTTCGACCCCTTTTCATCCTGCCTATGTCACGGCTGAAAGGATCAAGAAGGCAAAAAATCTACAACTTCTGCTGACAGCTGGAATTGGATCAGATCATGTTGATCTGAAAGCTGCTGCTGCTGCTGGATTGACAGTAGCAGAGGTCACTGGAAGCAATACTGTCTCAGTTGCGGAAGATGAACTGATGCGAATCTTAATTCTTGTCCGAAATTTCTTACCTGGACATCATCAGGTTATCAATGGGGAGTGGAATGTTGCTGCAATTGCGCACAGAGCTTATGA</genome_strand>
        <mrna_strand>CTGTTTTTACCAAGTACAAAACCCTTTGCTGTAAATCC--AAAAAATTCCGATGGCGATGAGTCGTGTAGCTTCTACAGCAGCTCGTGCTATTACTTCACCTTCATCCTTAGTTTTTACCAGAGAACTTCAG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCTTCCCCTGGCCCCAAAAAGATTGTGGGTGTTTTCTACAAAGCAAATGAATATGCTGAAATGAACCCCAACTTTTTGGGCTGTGCAGAAAATGCCTTGGGGATACGTGAATGGTTAGAATCTAAAGGTCATCAGTACATAGTCACTCCTGACAAAGAAGGACCGGATTGTG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGCTTGAGAAACACATTCCTGATCTCCATGTGTTGATTTCGACCCCTTTTCATCCTGCCTATGTCACGGCTGAAAGGATCAAGAAGGCAAAAAATCTACAACTACTGCTGACAGCTGGAATTGGATCAGATCATGTTGATCTGAAAGCTGCTGCTGCTGCTGGATTGACAGTAGCAGAGGTCACTGGAAGCAATACTGTCTCAGTTGCGGAAGATGAACTGATGCGAATCTTAATTCTTGTCCGAAATTTCTTGCCTGGACATCATCAGGTTATCAATGGGGAGTGGAATGTTGCTGCAATTGCGCACAGAGCTTATGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0236E02-u8qcS/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E448857" ref_strand="+" ref_description="SGN-E448857 [cSTS-4-N1]">
      <seq>ctgtttttaccagtacaaaaccctttgctgtaaatccaaaaaattccgatggcgatgagtcgtgtagcttctacagcagctcgtgctattacttcaccttcatccttagtttttaccagagaacttcaggcttcccctggccccaaaaagattgtgggtgttttctacaaagcaaatgaatatgctgaaatgaaccccaactttttgggctgtgcagaaaatgccttggggatacgtgaatggttagaatctaaaggtcatcagtacatagtcactcctgacaaagaaggaccggattgtgagcttgagaaacacattcctgatctccatgtgttgatttcgaccccttttcatcctgcctatgtcacggctgaaaggatcaagaaggcaaaaaatctacaactactgctgacagctggaattggatcagatcatgttgatctgaaagctgctgctgctgctggattgacagtagcagaggtcactggaagcaatactgtctcagttgcggaagatgaactgatgcgaatcttaattcttgtncgaaatttcttgcctggacatcatc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0236E02-u8qcS/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0236E02.1" temp_strand="+" temp_description="C02HBa0236E02.1  AC215430.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0236E02 sequenced_by:kribb upload_account_name:korea">
        <position start="65270" stop="68331"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="65558" g_stop="65689" g_length="132"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="129" r_length="129" r_score="0.932"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="65690" i_stop="66849" i_length="1160">
            <donor d_prob="1.000" d_score="0.98"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="66850" g_stop="67021" g_length="172"/>
          <reference_exon_boundary r_type="cDNA" r_start="130" r_stop="301" r_length="172" r_score="0.988"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="67022" i_stop="67764" i_length="743">
            <donor d_prob="0.994" d_score="0.98"/>
            <acceptor a_prob="0.987" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="67765" g_stop="68031" g_length="267"/>
          <reference_exon_boundary r_type="cDNA" r_start="302" r_stop="568" r_length="267" r_score="0.989"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0236E02.1" gen_strand="+" ref_id="SGN-E448857" ref_strand="+">
        <total_alignment_score>0.975</total_alignment_score>
        <cumulative_length_of_scored_exons>571</cumulative_length_of_scored_exons>
        <coverage percentage="1.005" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0236E02.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E448857" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="65558" e_stop="65689"/>
          <exon e_start="66850" e_stop="67021"/>
          <exon e_start="67765" e_stop="68031"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTGTTTTTAGTAAGTACGAAACCCTTTTCTGTAAATCCAAAAAAAATTCCGATGGCGATGAGGCGTGTAGCTTCTACAGCAGCTCGTGCTATTGCTTCACCTTCATCCTTAGTTTTTACCAGAGAACTTCAGGTAACTAGCCATTTCTCCTCAATAGCCACTTTTTGTTGCTTTTGTTTTATATGACCTAGTTTTCGCCCTTTGATGAATTATCGGAAACCGGCACGGATCAACTCCGATTTTTCGAGAATCAAGTGAGTTGGAGATTGGAACAGAGGAAACTAAAGGAATTTAACCGTGTAAAGGAAAAAATTAAACACACTGTATTTGGTGCTCTACCCCTCGTCTCTTCTTTTTGGCTTTCCCCGTACTCTACACACCAAATGAAATGGCTCGGATATGAAAGGACTAATAACTTTTCAGTTTTCATTACTGCGTCCTTTTTTAAGCTTTCAGTTTTAATTTGCGTGAATATACCTAATTTTTATTAGGGTAGAGTTATATGTTTCAAATTAAATTGCTACCAAGTTAAATTTAAGAATGTTACATAAATTTAGAGACGGCAAGTTTATATACCAAGAAGGGTACTCCTTCATCCACAGAGAAACGGTGTCCAGTTCGAGTATGGGCGTGAATCTAGATATAGTTAATTCCAATGCAGATATCAGACATCGAGTGAGGAAAAAAAAGATTTTATTAATTTGTTATTTTTAGGTTGCTTTTCCTTTAACTGAAAATCTAACCCGGCAGGACCACAACAGTTCTTTTCCGATCATTACTAATGATACTTGATTTTCACGTGCGATTTCTGATATTTTTATACGGAGTAGGTGAAGAGTGAAATGTTTCACGGGTCTCAAGGACAATGGCAGCAGTGCTTCATTTTTTTTTGCATCTTCACGTGCTATATTATTACTTTGTTTATACTAGTTCGACTTGGAAAATCTTTTCATATTCAGTTGTCTGGGGAATAAATAAGATATTTCTTATTTTTTGATTAAAAAAAGAAGAAGATATTTCTTATTTAAAGAAGTGACAAATTGTACTAACTCATTTACCATGCCTAATATATTATATGTGACAATGATGATTTTTTTTAACTATTAATTGTTAGTTTGGACAAAAATGATCAAAGCAAGTATATTGAATAATGCTTATTTCTTGCCAACTGGTGCATCTACGAGATTATAGGAGTTGGATTATAATTTTAGCACATCCAGCATGCTTATATGACCTTAAAATATTCATGTATATTCTGTCCACTCACCTTTTATTTCTTCATTATTTTACAGGCTTCCCCTGGCCCCAAAAAGATTGTGGGTGTTTTCTACAAAGCAAATGAATATGCTGAAATGAACCCCAACTTTTTGGGCTGTGCAGAAAATGCCTTGGGGATACGTGAATGGTTAGAGTCTAAAGGTCATCAGTACATAGTCACTCCTGACAAAGAAGGACCAGATTGTGGTTAGTTCCTGCTAATCTATAATCTCTCATGTTCTATCCATTATCCCACTGAAGCCTATGCATTTCTAAAGATAATTTCTTTACCCTTCATGCTTGTACAACTAAACACATCTTAAAAGGAGTATTTTTGCATTTAAAACATGCATATATGTGCTGAAGTTTTTTAAAAATATATGGCTCACGTGAGGAGAATATAACGGTCATAGCAGGAACATTTATTTAGATAAAGAGCAAAGCAAAGTAAACAATATTTGCTTTGTTAGTGTTGGTCCTTTGCTGCTAGTGAATTATGATCAGGACATTGTGAGGTAGTTTCTTGCAGGAGGGAAAAAAAGAGTGTATTTTACCTTGATATACAGGTGTGCATTTGCAAAACGTCTATACTTCAGGACTCAGGTGTAAGTTGTACTAGTTTGATAAGACTATGGCTAAATTTTGTAATTTAAACAAGGATTTATCAAAGTCGCAGGGGCTTGTTTAGTTGTTGAGTAGAGTGCACACATGGATGCTTTAGTGATTTTCTGATGGATGACATGCTTAGTGTAAATCCTTGCTTATTAGTATCTTTTATCATGAGAAAGAATGGTGCCCTAGTCTGACACACAAACTACTCTGTGTCTTAGTTTTTCACTGTTGAATCCTTTACTATGCTCTATGCAAAGAAATTTCTCCTGAGCTAAAGTTTTTGAGTGTGTCCATCTATAATAGCTTCTTTTTTTTTTCCCATGACTTTCTCTCTGCAGAGCTTGAGAAACACATTCCTGATCTCCATGTGTTGATTTCGACCCCTTTTCATCCTGCCTATGTCACGGCTGAAAGGATCAAGAAGGCAAAAAATCTACAACTTCTGCTGACAGCTGGAATTGGATCAGATCATGTTGATCTGAAAGCTGCTGCTGCTGCTGGATTGACAGTAGCAGAGGTCACTGGAAGCAATACTGTCTCAGTTGCGGAAGATGAACTGATGCGAATCTTAATTCTTGTCCGAAATTTCTTACCTGGACATCATC</genome_strand>
        <mrna_strand>CTGTTTTTACCA-GTACAAAACCCTTTGCTGTAAATCC--AAAAAATTCCGATGGCGATGAGTCGTGTAGCTTCTACAGCAGCTCGTGCTATTACTTCACCTTCATCCTTAGTTTTTACCAGAGAACTTCAG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCTTCCCCTGGCCCCAAAAAGATTGTGGGTGTTTTCTACAAAGCAAATGAATATGCTGAAATGAACCCCAACTTTTTGGGCTGTGCAGAAAATGCCTTGGGGATACGTGAATGGTTAGAATCTAAAGGTCATCAGTACATAGTCACTCCTGACAAAGAAGGACCGGATTGTG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGCTTGAGAAACACATTCCTGATCTCCATGTGTTGATTTCGACCCCTTTTCATCCTGCCTATGTCACGGCTGAAAGGATCAAGAAGGCAAAAAATCTACAACTACTGCTGACAGCTGGAATTGGATCAGATCATGTTGATCTGAAAGCTGCTGCTGCTGCTGGATTGACAGTAGCAGAGGTCACTGGAAGCAATACTGTCTCAGTTGCGGAAGATGAACTGATGCGAATCTTAATTCTTGTNCGAAATTTCTTGCCTGGACATCATC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0236E02-u8qcS/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E474949" ref_strand="+" ref_description="SGN-E474949 [cSTB-38-D9]">
      <seq>ctgtttttaccaagtacaaaaccctttgctgtaaatccaaaaaattccgatggcgatgagtcgtgtagcttctacagcagctcgtgctattacttcaccttcatccttagttgttaccagagaacttcaggcttcccctggccccaaaaagattgtgggtgttttctacaaagcaaatgaatatgctgaaatgaaccccaactttttgggctgtgcagaaaatgccttggggatacgtgaatggttagaatctaaaggtcatcagtacatagtcactcctgacaaagaaggaccggattgtgagcttgagaaacacattcctgatctccatgtgttgatttcgaccccttttcatcctgcctatgtcacggctgaaaggatcaagaaggcaaaaaatctacaactactgctgacagctggaattggatcagatcatgttgatctgaaagctgctgctgctgctggattgacagtagcagaggtcactggaagcaatactgtctcagttgcggaagatgaactgatgcgaatcttaattctt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0236E02-u8qcS/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0236E02.1" temp_strand="+" temp_description="C02HBa0236E02.1  AC215430.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0236E02 sequenced_by:kribb upload_account_name:korea">
        <position start="65258" stop="68303"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="65558" g_stop="65689" g_length="132"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="130" r_length="130" r_score="0.932"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="65690" i_stop="66849" i_length="1160">
            <donor d_prob="1.000" d_score="0.96"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="66850" g_stop="67021" g_length="172"/>
          <reference_exon_boundary r_type="cDNA" r_start="131" r_stop="302" r_length="172" r_score="0.988"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="67022" i_stop="67764" i_length="743">
            <donor d_prob="0.994" d_score="0.98"/>
            <acceptor a_prob="0.987" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="67765" g_stop="68003" g_length="239"/>
          <reference_exon_boundary r_type="cDNA" r_start="303" r_stop="541" r_length="239" r_score="0.996"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0236E02.1" gen_strand="+" ref_id="SGN-E474949" ref_strand="+">
        <total_alignment_score>0.978</total_alignment_score>
        <cumulative_length_of_scored_exons>543</cumulative_length_of_scored_exons>
        <coverage percentage="1.004" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0236E02.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E474949" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="65558" e_stop="65689"/>
          <exon e_start="66850" e_stop="67021"/>
          <exon e_start="67765" e_stop="68003"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTGTTTTTAGTAAGTACGAAACCCTTTTCTGTAAATCCAAAAAAAATTCCGATGGCGATGAGGCGTGTAGCTTCTACAGCAGCTCGTGCTATTGCTTCACCTTCATCCTTAGTTTTTACCAGAGAACTTCAGGTAACTAGCCATTTCTCCTCAATAGCCACTTTTTGTTGCTTTTGTTTTATATGACCTAGTTTTCGCCCTTTGATGAATTATCGGAAACCGGCACGGATCAACTCCGATTTTTCGAGAATCAAGTGAGTTGGAGATTGGAACAGAGGAAACTAAAGGAATTTAACCGTGTAAAGGAAAAAATTAAACACACTGTATTTGGTGCTCTACCCCTCGTCTCTTCTTTTTGGCTTTCCCCGTACTCTACACACCAAATGAAATGGCTCGGATATGAAAGGACTAATAACTTTTCAGTTTTCATTACTGCGTCCTTTTTTAAGCTTTCAGTTTTAATTTGCGTGAATATACCTAATTTTTATTAGGGTAGAGTTATATGTTTCAAATTAAATTGCTACCAAGTTAAATTTAAGAATGTTACATAAATTTAGAGACGGCAAGTTTATATACCAAGAAGGGTACTCCTTCATCCACAGAGAAACGGTGTCCAGTTCGAGTATGGGCGTGAATCTAGATATAGTTAATTCCAATGCAGATATCAGACATCGAGTGAGGAAAAAAAAGATTTTATTAATTTGTTATTTTTAGGTTGCTTTTCCTTTAACTGAAAATCTAACCCGGCAGGACCACAACAGTTCTTTTCCGATCATTACTAATGATACTTGATTTTCACGTGCGATTTCTGATATTTTTATACGGAGTAGGTGAAGAGTGAAATGTTTCACGGGTCTCAAGGACAATGGCAGCAGTGCTTCATTTTTTTTTGCATCTTCACGTGCTATATTATTACTTTGTTTATACTAGTTCGACTTGGAAAATCTTTTCATATTCAGTTGTCTGGGGAATAAATAAGATATTTCTTATTTTTTGATTAAAAAAAGAAGAAGATATTTCTTATTTAAAGAAGTGACAAATTGTACTAACTCATTTACCATGCCTAATATATTATATGTGACAATGATGATTTTTTTTAACTATTAATTGTTAGTTTGGACAAAAATGATCAAAGCAAGTATATTGAATAATGCTTATTTCTTGCCAACTGGTGCATCTACGAGATTATAGGAGTTGGATTATAATTTTAGCACATCCAGCATGCTTATATGACCTTAAAATATTCATGTATATTCTGTCCACTCACCTTTTATTTCTTCATTATTTTACAGGCTTCCCCTGGCCCCAAAAAGATTGTGGGTGTTTTCTACAAAGCAAATGAATATGCTGAAATGAACCCCAACTTTTTGGGCTGTGCAGAAAATGCCTTGGGGATACGTGAATGGTTAGAGTCTAAAGGTCATCAGTACATAGTCACTCCTGACAAAGAAGGACCAGATTGTGGTTAGTTCCTGCTAATCTATAATCTCTCATGTTCTATCCATTATCCCACTGAAGCCTATGCATTTCTAAAGATAATTTCTTTACCCTTCATGCTTGTACAACTAAACACATCTTAAAAGGAGTATTTTTGCATTTAAAACATGCATATATGTGCTGAAGTTTTTTAAAAATATATGGCTCACGTGAGGAGAATATAACGGTCATAGCAGGAACATTTATTTAGATAAAGAGCAAAGCAAAGTAAACAATATTTGCTTTGTTAGTGTTGGTCCTTTGCTGCTAGTGAATTATGATCAGGACATTGTGAGGTAGTTTCTTGCAGGAGGGAAAAAAAGAGTGTATTTTACCTTGATATACAGGTGTGCATTTGCAAAACGTCTATACTTCAGGACTCAGGTGTAAGTTGTACTAGTTTGATAAGACTATGGCTAAATTTTGTAATTTAAACAAGGATTTATCAAAGTCGCAGGGGCTTGTTTAGTTGTTGAGTAGAGTGCACACATGGATGCTTTAGTGATTTTCTGATGGATGACATGCTTAGTGTAAATCCTTGCTTATTAGTATCTTTTATCATGAGAAAGAATGGTGCCCTAGTCTGACACACAAACTACTCTGTGTCTTAGTTTTTCACTGTTGAATCCTTTACTATGCTCTATGCAAAGAAATTTCTCCTGAGCTAAAGTTTTTGAGTGTGTCCATCTATAATAGCTTCTTTTTTTTTTCCCATGACTTTCTCTCTGCAGAGCTTGAGAAACACATTCCTGATCTCCATGTGTTGATTTCGACCCCTTTTCATCCTGCCTATGTCACGGCTGAAAGGATCAAGAAGGCAAAAAATCTACAACTTCTGCTGACAGCTGGAATTGGATCAGATCATGTTGATCTGAAAGCTGCTGCTGCTGCTGGATTGACAGTAGCAGAGGTCACTGGAAGCAATACTGTCTCAGTTGCGGAAGATGAACTGATGCGAATCTTAATTCTT</genome_strand>
        <mrna_strand>CTGTTTTTACCAAGTACAAAACCCTTTGCTGTAAATCC--AAAAAATTCCGATGGCGATGAGTCGTGTAGCTTCTACAGCAGCTCGTGCTATTACTTCACCTTCATCCTTAGTTGTTACCAGAGAACTTCAG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCTTCCCCTGGCCCCAAAAAGATTGTGGGTGTTTTCTACAAAGCAAATGAATATGCTGAAATGAACCCCAACTTTTTGGGCTGTGCAGAAAATGCCTTGGGGATACGTGAATGGTTAGAATCTAAAGGTCATCAGTACATAGTCACTCCTGACAAAGAAGGACCGGATTGTG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGCTTGAGAAACACATTCCTGATCTCCATGTGTTGATTTCGACCCCTTTTCATCCTGCCTATGTCACGGCTGAAAGGATCAAGAAGGCAAAAAATCTACAACTACTGCTGACAGCTGGAATTGGATCAGATCATGTTGATCTGAAAGCTGCTGCTGCTGCTGGATTGACAGTAGCAGAGGTCACTGGAAGCAATACTGTCTCAGTTGCGGAAGATGAACTGATGCGAATCTTAATTCTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0236E02-u8qcS/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E705509" ref_strand="+" ref_description="SGN-E705509 [FA27BD10]">
      <seq>gtttttagtaagtacgaaacccttttctgtaaatccaaaaaaaattccgatggcgatgaggcgtgtagcttctacagcagctcgtgctattgcttcaccttcatccttagtttttaccagagaacttcaggcttcccctggccccaaaaagattgtgggtgttttctacaaagcaaatgaatatgctgaaatgaaccccaactttttgggctgtgcagaaaatgccttggggatacgtgaatggttagagtctaaaggtcatcagtacatagtcactcctgacaaagaaggaccagattgtgagcttgagaaacacattcctgatctccatgtgttgatttcgaccccttttcatcctgcctatgtcacggctgaaaggatcaagaaggcaaaaaatctacaacttctgctgacagctggaattggatcagatcatgttgatctgaaagctgctgctgctgctggattgacagtagcagaggtcactggaagcaatactgtctcagttgcggaagatgaactgatgcgaatcttaattcttgtccgaaatttcttacctggacatcatcaggttatcaatggggagtggaatgttgctgcaattgcgcacagagcttatgatttggaaggcaagactgttggaactgttggtgcaggacgtattggcagacttttactccagcgattgaagccatttaactgtaatctactttaccatgaccgtcttaagatggattctgagctagagaatcaaattggagcaaagtttgaggaagatctcgataagatgctctcgaaatgtgacatagtggtcatcaatacgcctcttacagagaaaacaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0236E02-u8qcS/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0236E02.1" temp_strand="+" temp_description="C02HBa0236E02.1  AC215430.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0236E02 sequenced_by:kribb upload_account_name:korea">
        <position start="65260" stop="68604"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="65560" g_stop="65689" g_length="130"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="130" r_length="130" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="65690" i_stop="66849" i_length="1160">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="66850" g_stop="67021" g_length="172"/>
          <reference_exon_boundary r_type="cDNA" r_start="131" r_stop="302" r_length="172" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="67022" i_stop="67764" i_length="743">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="0.987" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="67765" g_stop="68304" g_length="540"/>
          <reference_exon_boundary r_type="cDNA" r_start="303" r_stop="842" r_length="540" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0236E02.1" gen_strand="+" ref_id="SGN-E705509" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>842</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0236E02.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E705509" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="65560" e_stop="65689"/>
          <exon e_start="66850" e_stop="67021"/>
          <exon e_start="67765" e_stop="68304"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTTTTTAGTAAGTACGAAACCCTTTTCTGTAAATCCAAAAAAAATTCCGATGGCGATGAGGCGTGTAGCTTCTACAGCAGCTCGTGCTATTGCTTCACCTTCATCCTTAGTTTTTACCAGAGAACTTCAGGTAACTAGCCATTTCTCCTCAATAGCCACTTTTTGTTGCTTTTGTTTTATATGACCTAGTTTTCGCCCTTTGATGAATTATCGGAAACCGGCACGGATCAACTCCGATTTTTCGAGAATCAAGTGAGTTGGAGATTGGAACAGAGGAAACTAAAGGAATTTAACCGTGTAAAGGAAAAAATTAAACACACTGTATTTGGTGCTCTACCCCTCGTCTCTTCTTTTTGGCTTTCCCCGTACTCTACACACCAAATGAAATGGCTCGGATATGAAAGGACTAATAACTTTTCAGTTTTCATTACTGCGTCCTTTTTTAAGCTTTCAGTTTTAATTTGCGTGAATATACCTAATTTTTATTAGGGTAGAGTTATATGTTTCAAATTAAATTGCTACCAAGTTAAATTTAAGAATGTTACATAAATTTAGAGACGGCAAGTTTATATACCAAGAAGGGTACTCCTTCATCCACAGAGAAACGGTGTCCAGTTCGAGTATGGGCGTGAATCTAGATATAGTTAATTCCAATGCAGATATCAGACATCGAGTGAGGAAAAAAAAGATTTTATTAATTTGTTATTTTTAGGTTGCTTTTCCTTTAACTGAAAATCTAACCCGGCAGGACCACAACAGTTCTTTTCCGATCATTACTAATGATACTTGATTTTCACGTGCGATTTCTGATATTTTTATACGGAGTAGGTGAAGAGTGAAATGTTTCACGGGTCTCAAGGACAATGGCAGCAGTGCTTCATTTTTTTTTGCATCTTCACGTGCTATATTATTACTTTGTTTATACTAGTTCGACTTGGAAAATCTTTTCATATTCAGTTGTCTGGGGAATAAATAAGATATTTCTTATTTTTTGATTAAAAAAAGAAGAAGATATTTCTTATTTAAAGAAGTGACAAATTGTACTAACTCATTTACCATGCCTAATATATTATATGTGACAATGATGATTTTTTTTAACTATTAATTGTTAGTTTGGACAAAAATGATCAAAGCAAGTATATTGAATAATGCTTATTTCTTGCCAACTGGTGCATCTACGAGATTATAGGAGTTGGATTATAATTTTAGCACATCCAGCATGCTTATATGACCTTAAAATATTCATGTATATTCTGTCCACTCACCTTTTATTTCTTCATTATTTTACAGGCTTCCCCTGGCCCCAAAAAGATTGTGGGTGTTTTCTACAAAGCAAATGAATATGCTGAAATGAACCCCAACTTTTTGGGCTGTGCAGAAAATGCCTTGGGGATACGTGAATGGTTAGAGTCTAAAGGTCATCAGTACATAGTCACTCCTGACAAAGAAGGACCAGATTGTGGTTAGTTCCTGCTAATCTATAATCTCTCATGTTCTATCCATTATCCCACTGAAGCCTATGCATTTCTAAAGATAATTTCTTTACCCTTCATGCTTGTACAACTAAACACATCTTAAAAGGAGTATTTTTGCATTTAAAACATGCATATATGTGCTGAAGTTTTTTAAAAATATATGGCTCACGTGAGGAGAATATAACGGTCATAGCAGGAACATTTATTTAGATAAAGAGCAAAGCAAAGTAAACAATATTTGCTTTGTTAGTGTTGGTCCTTTGCTGCTAGTGAATTATGATCAGGACATTGTGAGGTAGTTTCTTGCAGGAGGGAAAAAAAGAGTGTATTTTACCTTGATATACAGGTGTGCATTTGCAAAACGTCTATACTTCAGGACTCAGGTGTAAGTTGTACTAGTTTGATAAGACTATGGCTAAATTTTGTAATTTAAACAAGGATTTATCAAAGTCGCAGGGGCTTGTTTAGTTGTTGAGTAGAGTGCACACATGGATGCTTTAGTGATTTTCTGATGGATGACATGCTTAGTGTAAATCCTTGCTTATTAGTATCTTTTATCATGAGAAAGAATGGTGCCCTAGTCTGACACACAAACTACTCTGTGTCTTAGTTTTTCACTGTTGAATCCTTTACTATGCTCTATGCAAAGAAATTTCTCCTGAGCTAAAGTTTTTGAGTGTGTCCATCTATAATAGCTTCTTTTTTTTTTCCCATGACTTTCTCTCTGCAGAGCTTGAGAAACACATTCCTGATCTCCATGTGTTGATTTCGACCCCTTTTCATCCTGCCTATGTCACGGCTGAAAGGATCAAGAAGGCAAAAAATCTACAACTTCTGCTGACAGCTGGAATTGGATCAGATCATGTTGATCTGAAAGCTGCTGCTGCTGCTGGATTGACAGTAGCAGAGGTCACTGGAAGCAATACTGTCTCAGTTGCGGAAGATGAACTGATGCGAATCTTAATTCTTGTCCGAAATTTCTTACCTGGACATCATCAGGTTATCAATGGGGAGTGGAATGTTGCTGCAATTGCGCACAGAGCTTATGATTTGGAAGGCAAGACTGTTGGAACTGTTGGTGCAGGACGTATTGGCAGACTTTTACTCCAGCGATTGAAGCCATTTAACTGTAATCTACTTTACCATGACCGTCTTAAGATGGATTCTGAGCTAGAGAATCAAATTGGAGCAAAGTTTGAGGAAGATCTCGATAAGATGCTCTCGAAATGTGACATAGTGGTCATCAATACGCCTCTTACAGAGAAAACAA</genome_strand>
        <mrna_strand>GTTTTTAGTAAGTACGAAACCCTTTTCTGTAAATCCAAAAAAAATTCCGATGGCGATGAGGCGTGTAGCTTCTACAGCAGCTCGTGCTATTGCTTCACCTTCATCCTTAGTTTTTACCAGAGAACTTCAG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCTTCCCCTGGCCCCAAAAAGATTGTGGGTGTTTTCTACAAAGCAAATGAATATGCTGAAATGAACCCCAACTTTTTGGGCTGTGCAGAAAATGCCTTGGGGATACGTGAATGGTTAGAGTCTAAAGGTCATCAGTACATAGTCACTCCTGACAAAGAAGGACCAGATTGTG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGCTTGAGAAACACATTCCTGATCTCCATGTGTTGATTTCGACCCCTTTTCATCCTGCCTATGTCACGGCTGAAAGGATCAAGAAGGCAAAAAATCTACAACTTCTGCTGACAGCTGGAATTGGATCAGATCATGTTGATCTGAAAGCTGCTGCTGCTGCTGGATTGACAGTAGCAGAGGTCACTGGAAGCAATACTGTCTCAGTTGCGGAAGATGAACTGATGCGAATCTTAATTCTTGTCCGAAATTTCTTACCTGGACATCATCAGGTTATCAATGGGGAGTGGAATGTTGCTGCAATTGCGCACAGAGCTTATGATTTGGAAGGCAAGACTGTTGGAACTGTTGGTGCAGGACGTATTGGCAGACTTTTACTCCAGCGATTGAAGCCATTTAACTGTAATCTACTTTACCATGACCGTCTTAAGATGGATTCTGAGCTAGAGAATCAAATTGGAGCAAAGTTTGAGGAAGATCTCGATAAGATGCTCTCGAAATGTGACATAGTGGTCATCAATACGCCTCTTACAGAGAAAACAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0236E02-u8qcS/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E315304" ref_strand="+" ref_description="SGN-E315304 [cTOA-24-F3]">
      <seq>gtttttagtaagtacgaaacccttttctgtaaatccaaaaaaaattccgatggcgatgaggcgtgtagcttctacagcagctcgtgctattgcttcaccttcatccttagtttttaccagagaacttcaggcttcccctggccccaaaaagattgtgggtgttttctacaaagcaaatgaatatgctgaaatgaaccccaactttttgggctgtgcagaaaatgccttggggatacgtgaatggttagagtctaaaggtcatcagtacatagtcactcctgacaaagaaggaccagattgtgagcttgagaaacacattcctgatctccatgtgttgatttcgaccccttttcatcctgcctatgtcacggctgaaaggatcaagaaggcaaaaaatctacaacttctgctgacagctggaattggatcagatcatgttgatctgaaagctgctgctgctgctggattgacagtagcagaggtcactggaagcaatactgtctcagttgcggaagatgaactgatgcgaatcttaattcttgtccgaaatttcttacctggacatcatcaggttatcaatggggagtggaatgttgctgcaattgcgcacagagcttatgatttggaagggcagactgttggaactgttggtgcaggacgtattggcagacttttactccagcgattgaagccatttaactgtaatctactttta</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0236E02-u8qcS/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0236E02.1" temp_strand="+" temp_description="C02HBa0236E02.1  AC215430.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0236E02 sequenced_by:kribb upload_account_name:korea">
        <position start="65260" stop="68475"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="65560" g_stop="65689" g_length="130"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="130" r_length="130" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="65690" i_stop="66849" i_length="1160">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="66850" g_stop="67021" g_length="172"/>
          <reference_exon_boundary r_type="cDNA" r_start="131" r_stop="302" r_length="172" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="67022" i_stop="67764" i_length="743">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="0.987" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="67765" g_stop="68177" g_length="413"/>
          <reference_exon_boundary r_type="cDNA" r_start="303" r_stop="715" r_length="413" r_score="0.990"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0236E02.1" gen_strand="+" ref_id="SGN-E315304" ref_strand="+">
        <total_alignment_score>0.994</total_alignment_score>
        <cumulative_length_of_scored_exons>715</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0236E02.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E315304" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="65560" e_stop="65689"/>
          <exon e_start="66850" e_stop="67021"/>
          <exon e_start="67765" e_stop="68177"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTTTTTAGTAAGTACGAAACCCTTTTCTGTAAATCCAAAAAAAATTCCGATGGCGATGAGGCGTGTAGCTTCTACAGCAGCTCGTGCTATTGCTTCACCTTCATCCTTAGTTTTTACCAGAGAACTTCAGGTAACTAGCCATTTCTCCTCAATAGCCACTTTTTGTTGCTTTTGTTTTATATGACCTAGTTTTCGCCCTTTGATGAATTATCGGAAACCGGCACGGATCAACTCCGATTTTTCGAGAATCAAGTGAGTTGGAGATTGGAACAGAGGAAACTAAAGGAATTTAACCGTGTAAAGGAAAAAATTAAACACACTGTATTTGGTGCTCTACCCCTCGTCTCTTCTTTTTGGCTTTCCCCGTACTCTACACACCAAATGAAATGGCTCGGATATGAAAGGACTAATAACTTTTCAGTTTTCATTACTGCGTCCTTTTTTAAGCTTTCAGTTTTAATTTGCGTGAATATACCTAATTTTTATTAGGGTAGAGTTATATGTTTCAAATTAAATTGCTACCAAGTTAAATTTAAGAATGTTACATAAATTTAGAGACGGCAAGTTTATATACCAAGAAGGGTACTCCTTCATCCACAGAGAAACGGTGTCCAGTTCGAGTATGGGCGTGAATCTAGATATAGTTAATTCCAATGCAGATATCAGACATCGAGTGAGGAAAAAAAAGATTTTATTAATTTGTTATTTTTAGGTTGCTTTTCCTTTAACTGAAAATCTAACCCGGCAGGACCACAACAGTTCTTTTCCGATCATTACTAATGATACTTGATTTTCACGTGCGATTTCTGATATTTTTATACGGAGTAGGTGAAGAGTGAAATGTTTCACGGGTCTCAAGGACAATGGCAGCAGTGCTTCATTTTTTTTTGCATCTTCACGTGCTATATTATTACTTTGTTTATACTAGTTCGACTTGGAAAATCTTTTCATATTCAGTTGTCTGGGGAATAAATAAGATATTTCTTATTTTTTGATTAAAAAAAGAAGAAGATATTTCTTATTTAAAGAAGTGACAAATTGTACTAACTCATTTACCATGCCTAATATATTATATGTGACAATGATGATTTTTTTTAACTATTAATTGTTAGTTTGGACAAAAATGATCAAAGCAAGTATATTGAATAATGCTTATTTCTTGCCAACTGGTGCATCTACGAGATTATAGGAGTTGGATTATAATTTTAGCACATCCAGCATGCTTATATGACCTTAAAATATTCATGTATATTCTGTCCACTCACCTTTTATTTCTTCATTATTTTACAGGCTTCCCCTGGCCCCAAAAAGATTGTGGGTGTTTTCTACAAAGCAAATGAATATGCTGAAATGAACCCCAACTTTTTGGGCTGTGCAGAAAATGCCTTGGGGATACGTGAATGGTTAGAGTCTAAAGGTCATCAGTACATAGTCACTCCTGACAAAGAAGGACCAGATTGTGGTTAGTTCCTGCTAATCTATAATCTCTCATGTTCTATCCATTATCCCACTGAAGCCTATGCATTTCTAAAGATAATTTCTTTACCCTTCATGCTTGTACAACTAAACACATCTTAAAAGGAGTATTTTTGCATTTAAAACATGCATATATGTGCTGAAGTTTTTTAAAAATATATGGCTCACGTGAGGAGAATATAACGGTCATAGCAGGAACATTTATTTAGATAAAGAGCAAAGCAAAGTAAACAATATTTGCTTTGTTAGTGTTGGTCCTTTGCTGCTAGTGAATTATGATCAGGACATTGTGAGGTAGTTTCTTGCAGGAGGGAAAAAAAGAGTGTATTTTACCTTGATATACAGGTGTGCATTTGCAAAACGTCTATACTTCAGGACTCAGGTGTAAGTTGTACTAGTTTGATAAGACTATGGCTAAATTTTGTAATTTAAACAAGGATTTATCAAAGTCGCAGGGGCTTGTTTAGTTGTTGAGTAGAGTGCACACATGGATGCTTTAGTGATTTTCTGATGGATGACATGCTTAGTGTAAATCCTTGCTTATTAGTATCTTTTATCATGAGAAAGAATGGTGCCCTAGTCTGACACACAAACTACTCTGTGTCTTAGTTTTTCACTGTTGAATCCTTTACTATGCTCTATGCAAAGAAATTTCTCCTGAGCTAAAGTTTTTGAGTGTGTCCATCTATAATAGCTTCTTTTTTTTTTCCCATGACTTTCTCTCTGCAGAGCTTGAGAAACACATTCCTGATCTCCATGTGTTGATTTCGACCCCTTTTCATCCTGCCTATGTCACGGCTGAAAGGATCAAGAAGGCAAAAAATCTACAACTTCTGCTGACAGCTGGAATTGGATCAGATCATGTTGATCTGAAAGCTGCTGCTGCTGCTGGATTGACAGTAGCAGAGGTCACTGGAAGCAATACTGTCTCAGTTGCGGAAGATGAACTGATGCGAATCTTAATTCTTGTCCGAAATTTCTTACCTGGACATCATCAGGTTATCAATGGGGAGTGGAATGTTGCTGCAATTGCGCACAGAGCTTATGATTTGGAAGGCAAGACTGTTGGAACTGTTGGTGCAGGACGTATTGGCAGACTTTTACTCCAGCGATTGAAGCCATTTAACTGTAATCTACTTTAC</genome_strand>
        <mrna_strand>GTTTTTAGTAAGTACGAAACCCTTTTCTGTAAATCCAAAAAAAATTCCGATGGCGATGAGGCGTGTAGCTTCTACAGCAGCTCGTGCTATTGCTTCACCTTCATCCTTAGTTTTTACCAGAGAACTTCAG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCTTCCCCTGGCCCCAAAAAGATTGTGGGTGTTTTCTACAAAGCAAATGAATATGCTGAAATGAACCCCAACTTTTTGGGCTGTGCAGAAAATGCCTTGGGGATACGTGAATGGTTAGAGTCTAAAGGTCATCAGTACATAGTCACTCCTGACAAAGAAGGACCAGATTGTG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGCTTGAGAAACACATTCCTGATCTCCATGTGTTGATTTCGACCCCTTTTCATCCTGCCTATGTCACGGCTGAAAGGATCAAGAAGGCAAAAAATCTACAACTTCTGCTGACAGCTGGAATTGGATCAGATCATGTTGATCTGAAAGCTGCTGCTGCTGCTGGATTGACAGTAGCAGAGGTCACTGGAAGCAATACTGTCTCAGTTGCGGAAGATGAACTGATGCGAATCTTAATTCTTGTCCGAAATTTCTTACCTGGACATCATCAGGTTATCAATGGGGAGTGGAATGTTGCTGCAATTGCGCACAGAGCTTATGATTTGGAAGGGCAGACTGTTGGAACTGTTGGTGCAGGACGTATTGGCAGACTTTTACTCCAGCGATTGAAGCCATTTAACTGTAATCTACTTTTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0236E02-u8qcS/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E450051" ref_strand="+" ref_description="SGN-E450051 [cSTS-8-A18]">
      <seq>gtttttaccaagtacaaaaccctttgctgtaaatccaaaaaattccgatggcgatgagtcgtgtagcttctacagcagctcgtgctattacttcaccttcatccttagtttttaccagagaacttcaggcttcccctggccccaaaaagattgtgggtgttttctacaaagcaaatgaatatgctgaaatgaaccccaactttttgggctgtgcagaaaatgccttggggatacgtgaatggttagaatctaaaggtcatcagtacatagtcactcctgacaaagaaggaccggattgtgagcttgagaaacacattcctgatctccatgtgttgatttcgaccccttttcatcctgcctatgtcacggctgaaaggatcaagaaggcaaaaaatctacaactactgctgacagctggaattggatcagatcatgttgatctgaaagctgctgctgctgctggattgacagtagcagaggtcactggaagcaatactgtctcagttgcggaagatgaactgatgcgaatcttaattcttgtccgaaatttcttgcctggacatcatcaggttatcaatggggagtggaatgttgctgcaattgcgcacagagcttatgatttggaaggcaagactgttggaactgttggtgcangacgtattggcagacttttactccaacgattgaagccatttaactgtaatctacttta</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0236E02-u8qcS/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0236E02.1" temp_strand="+" temp_description="C02HBa0236E02.1  AC215430.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0236E02 sequenced_by:kribb upload_account_name:korea">
        <position start="65260" stop="68476"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="65560" g_stop="65689" g_length="130"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="128" r_length="128" r_score="0.938"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="65690" i_stop="66849" i_length="1160">
            <donor d_prob="1.000" d_score="0.98"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="66850" g_stop="67021" g_length="172"/>
          <reference_exon_boundary r_type="cDNA" r_start="129" r_stop="300" r_length="172" r_score="0.988"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="67022" i_stop="67764" i_length="743">
            <donor d_prob="0.994" d_score="0.98"/>
            <acceptor a_prob="0.987" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="67765" g_stop="68176" g_length="412"/>
          <reference_exon_boundary r_type="cDNA" r_start="301" r_stop="712" r_length="412" r_score="0.990"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0236E02.1" gen_strand="+" ref_id="SGN-E450051" ref_strand="+">
        <total_alignment_score>0.980</total_alignment_score>
        <cumulative_length_of_scored_exons>714</cumulative_length_of_scored_exons>
        <coverage percentage="1.003" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0236E02.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E450051" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="65560" e_stop="65689"/>
          <exon e_start="66850" e_stop="67021"/>
          <exon e_start="67765" e_stop="68176"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTTTTTAGTAAGTACGAAACCCTTTTCTGTAAATCCAAAAAAAATTCCGATGGCGATGAGGCGTGTAGCTTCTACAGCAGCTCGTGCTATTGCTTCACCTTCATCCTTAGTTTTTACCAGAGAACTTCAGGTAACTAGCCATTTCTCCTCAATAGCCACTTTTTGTTGCTTTTGTTTTATATGACCTAGTTTTCGCCCTTTGATGAATTATCGGAAACCGGCACGGATCAACTCCGATTTTTCGAGAATCAAGTGAGTTGGAGATTGGAACAGAGGAAACTAAAGGAATTTAACCGTGTAAAGGAAAAAATTAAACACACTGTATTTGGTGCTCTACCCCTCGTCTCTTCTTTTTGGCTTTCCCCGTACTCTACACACCAAATGAAATGGCTCGGATATGAAAGGACTAATAACTTTTCAGTTTTCATTACTGCGTCCTTTTTTAAGCTTTCAGTTTTAATTTGCGTGAATATACCTAATTTTTATTAGGGTAGAGTTATATGTTTCAAATTAAATTGCTACCAAGTTAAATTTAAGAATGTTACATAAATTTAGAGACGGCAAGTTTATATACCAAGAAGGGTACTCCTTCATCCACAGAGAAACGGTGTCCAGTTCGAGTATGGGCGTGAATCTAGATATAGTTAATTCCAATGCAGATATCAGACATCGAGTGAGGAAAAAAAAGATTTTATTAATTTGTTATTTTTAGGTTGCTTTTCCTTTAACTGAAAATCTAACCCGGCAGGACCACAACAGTTCTTTTCCGATCATTACTAATGATACTTGATTTTCACGTGCGATTTCTGATATTTTTATACGGAGTAGGTGAAGAGTGAAATGTTTCACGGGTCTCAAGGACAATGGCAGCAGTGCTTCATTTTTTTTTGCATCTTCACGTGCTATATTATTACTTTGTTTATACTAGTTCGACTTGGAAAATCTTTTCATATTCAGTTGTCTGGGGAATAAATAAGATATTTCTTATTTTTTGATTAAAAAAAGAAGAAGATATTTCTTATTTAAAGAAGTGACAAATTGTACTAACTCATTTACCATGCCTAATATATTATATGTGACAATGATGATTTTTTTTAACTATTAATTGTTAGTTTGGACAAAAATGATCAAAGCAAGTATATTGAATAATGCTTATTTCTTGCCAACTGGTGCATCTACGAGATTATAGGAGTTGGATTATAATTTTAGCACATCCAGCATGCTTATATGACCTTAAAATATTCATGTATATTCTGTCCACTCACCTTTTATTTCTTCATTATTTTACAGGCTTCCCCTGGCCCCAAAAAGATTGTGGGTGTTTTCTACAAAGCAAATGAATATGCTGAAATGAACCCCAACTTTTTGGGCTGTGCAGAAAATGCCTTGGGGATACGTGAATGGTTAGAGTCTAAAGGTCATCAGTACATAGTCACTCCTGACAAAGAAGGACCAGATTGTGGTTAGTTCCTGCTAATCTATAATCTCTCATGTTCTATCCATTATCCCACTGAAGCCTATGCATTTCTAAAGATAATTTCTTTACCCTTCATGCTTGTACAACTAAACACATCTTAAAAGGAGTATTTTTGCATTTAAAACATGCATATATGTGCTGAAGTTTTTTAAAAATATATGGCTCACGTGAGGAGAATATAACGGTCATAGCAGGAACATTTATTTAGATAAAGAGCAAAGCAAAGTAAACAATATTTGCTTTGTTAGTGTTGGTCCTTTGCTGCTAGTGAATTATGATCAGGACATTGTGAGGTAGTTTCTTGCAGGAGGGAAAAAAAGAGTGTATTTTACCTTGATATACAGGTGTGCATTTGCAAAACGTCTATACTTCAGGACTCAGGTGTAAGTTGTACTAGTTTGATAAGACTATGGCTAAATTTTGTAATTTAAACAAGGATTTATCAAAGTCGCAGGGGCTTGTTTAGTTGTTGAGTAGAGTGCACACATGGATGCTTTAGTGATTTTCTGATGGATGACATGCTTAGTGTAAATCCTTGCTTATTAGTATCTTTTATCATGAGAAAGAATGGTGCCCTAGTCTGACACACAAACTACTCTGTGTCTTAGTTTTTCACTGTTGAATCCTTTACTATGCTCTATGCAAAGAAATTTCTCCTGAGCTAAAGTTTTTGAGTGTGTCCATCTATAATAGCTTCTTTTTTTTTTCCCATGACTTTCTCTCTGCAGAGCTTGAGAAACACATTCCTGATCTCCATGTGTTGATTTCGACCCCTTTTCATCCTGCCTATGTCACGGCTGAAAGGATCAAGAAGGCAAAAAATCTACAACTTCTGCTGACAGCTGGAATTGGATCAGATCATGTTGATCTGAAAGCTGCTGCTGCTGCTGGATTGACAGTAGCAGAGGTCACTGGAAGCAATACTGTCTCAGTTGCGGAAGATGAACTGATGCGAATCTTAATTCTTGTCCGAAATTTCTTACCTGGACATCATCAGGTTATCAATGGGGAGTGGAATGTTGCTGCAATTGCGCACAGAGCTTATGATTTGGAAGGCAAGACTGTTGGAACTGTTGGTGCAGGACGTATTGGCAGACTTTTACTCCAGCGATTGAAGCCATTTAACTGTAATCTACTTTA</genome_strand>
        <mrna_strand>GTTTTTACCAAGTACAAAACCCTTTGCTGTAAATCC--AAAAAATTCCGATGGCGATGAGTCGTGTAGCTTCTACAGCAGCTCGTGCTATTACTTCACCTTCATCCTTAGTTTTTACCAGAGAACTTCAG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCTTCCCCTGGCCCCAAAAAGATTGTGGGTGTTTTCTACAAAGCAAATGAATATGCTGAAATGAACCCCAACTTTTTGGGCTGTGCAGAAAATGCCTTGGGGATACGTGAATGGTTAGAATCTAAAGGTCATCAGTACATAGTCACTCCTGACAAAGAAGGACCGGATTGTG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGCTTGAGAAACACATTCCTGATCTCCATGTGTTGATTTCGACCCCTTTTCATCCTGCCTATGTCACGGCTGAAAGGATCAAGAAGGCAAAAAATCTACAACTACTGCTGACAGCTGGAATTGGATCAGATCATGTTGATCTGAAAGCTGCTGCTGCTGCTGGATTGACAGTAGCAGAGGTCACTGGAAGCAATACTGTCTCAGTTGCGGAAGATGAACTGATGCGAATCTTAATTCTTGTCCGAAATTTCTTGCCTGGACATCATCAGGTTATCAATGGGGAGTGGAATGTTGCTGCAATTGCGCACAGAGCTTATGATTTGGAAGGCAAGACTGTTGGAACTGTTGGTGCANGACGTATTGGCAGACTTTTACTCCAACGATTGAAGCCATTTAACTGTAATCTACTTTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0236E02-u8qcS/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E423813" ref_strand="+" ref_description="SGN-E423813 [STM-42-J11]">
      <seq>gtttttaccaagtacaaaaccctttgctgtaaatccaaaaaattccgatggcgatgagtcgtgtagcttctacagcagctcgtgctattacttcaccttcatccttagtttttaccagagaacttcaggcttcccctggccccaaaaagattgtgggtgttttctacaaagcaaatgaatatgctgaaatgaaccccaactttttgggctgtgcagaaaatgccttggggatacgtgaatggttagaatctaaaggtcatcagtacatagtcactcctgacaaagaaggaccagattgtgagcttgagaaacacattcctgatctccatgtgttgatttcgaccccttttcatcctgcctatgtcacggctgaaaggatcaagaaggcaaaaaatctacaactactgctgacagctggaattggatcagatcatgttgatctgaaagctgctgctgctgctggattgacagtagcagaggtcactggaagcaatactgtctcagttgcggaagatgaactgatgcgaatcttaattcttgtccgaaatttcttgcctggacatcatcaggttatcaatgggggagtggaatgttgctgcaattgcgcacagagcttatgatttgga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0236E02-u8qcS/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0236E02.1" temp_strand="+" temp_description="C02HBa0236E02.1  AC215430.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0236E02 sequenced_by:kribb upload_account_name:korea">
        <position start="65260" stop="68389"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="65560" g_stop="65689" g_length="130"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="128" r_length="128" r_score="0.938"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="65690" i_stop="66849" i_length="1160">
            <donor d_prob="1.000" d_score="0.98"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="66850" g_stop="67021" g_length="172"/>
          <reference_exon_boundary r_type="cDNA" r_start="129" r_stop="300" r_length="172" r_score="0.994"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="67022" i_stop="67764" i_length="743">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="0.987" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="67765" g_stop="68089" g_length="325"/>
          <reference_exon_boundary r_type="cDNA" r_start="301" r_stop="626" r_length="326" r_score="0.988"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0236E02.1" gen_strand="+" ref_id="SGN-E423813" ref_strand="+">
        <total_alignment_score>0.979</total_alignment_score>
        <cumulative_length_of_scored_exons>627</cumulative_length_of_scored_exons>
        <coverage percentage="1.002" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0236E02.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E423813" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="65560" e_stop="65689"/>
          <exon e_start="66850" e_stop="67021"/>
          <exon e_start="67765" e_stop="68089"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTTTTTAGTAAGTACGAAACCCTTTTCTGTAAATCCAAAAAAAATTCCGATGGCGATGAGGCGTGTAGCTTCTACAGCAGCTCGTGCTATTGCTTCACCTTCATCCTTAGTTTTTACCAGAGAACTTCAGGTAACTAGCCATTTCTCCTCAATAGCCACTTTTTGTTGCTTTTGTTTTATATGACCTAGTTTTCGCCCTTTGATGAATTATCGGAAACCGGCACGGATCAACTCCGATTTTTCGAGAATCAAGTGAGTTGGAGATTGGAACAGAGGAAACTAAAGGAATTTAACCGTGTAAAGGAAAAAATTAAACACACTGTATTTGGTGCTCTACCCCTCGTCTCTTCTTTTTGGCTTTCCCCGTACTCTACACACCAAATGAAATGGCTCGGATATGAAAGGACTAATAACTTTTCAGTTTTCATTACTGCGTCCTTTTTTAAGCTTTCAGTTTTAATTTGCGTGAATATACCTAATTTTTATTAGGGTAGAGTTATATGTTTCAAATTAAATTGCTACCAAGTTAAATTTAAGAATGTTACATAAATTTAGAGACGGCAAGTTTATATACCAAGAAGGGTACTCCTTCATCCACAGAGAAACGGTGTCCAGTTCGAGTATGGGCGTGAATCTAGATATAGTTAATTCCAATGCAGATATCAGACATCGAGTGAGGAAAAAAAAGATTTTATTAATTTGTTATTTTTAGGTTGCTTTTCCTTTAACTGAAAATCTAACCCGGCAGGACCACAACAGTTCTTTTCCGATCATTACTAATGATACTTGATTTTCACGTGCGATTTCTGATATTTTTATACGGAGTAGGTGAAGAGTGAAATGTTTCACGGGTCTCAAGGACAATGGCAGCAGTGCTTCATTTTTTTTTGCATCTTCACGTGCTATATTATTACTTTGTTTATACTAGTTCGACTTGGAAAATCTTTTCATATTCAGTTGTCTGGGGAATAAATAAGATATTTCTTATTTTTTGATTAAAAAAAGAAGAAGATATTTCTTATTTAAAGAAGTGACAAATTGTACTAACTCATTTACCATGCCTAATATATTATATGTGACAATGATGATTTTTTTTAACTATTAATTGTTAGTTTGGACAAAAATGATCAAAGCAAGTATATTGAATAATGCTTATTTCTTGCCAACTGGTGCATCTACGAGATTATAGGAGTTGGATTATAATTTTAGCACATCCAGCATGCTTATATGACCTTAAAATATTCATGTATATTCTGTCCACTCACCTTTTATTTCTTCATTATTTTACAGGCTTCCCCTGGCCCCAAAAAGATTGTGGGTGTTTTCTACAAAGCAAATGAATATGCTGAAATGAACCCCAACTTTTTGGGCTGTGCAGAAAATGCCTTGGGGATACGTGAATGGTTAGAGTCTAAAGGTCATCAGTACATAGTCACTCCTGACAAAGAAGGACCAGATTGTGGTTAGTTCCTGCTAATCTATAATCTCTCATGTTCTATCCATTATCCCACTGAAGCCTATGCATTTCTAAAGATAATTTCTTTACCCTTCATGCTTGTACAACTAAACACATCTTAAAAGGAGTATTTTTGCATTTAAAACATGCATATATGTGCTGAAGTTTTTTAAAAATATATGGCTCACGTGAGGAGAATATAACGGTCATAGCAGGAACATTTATTTAGATAAAGAGCAAAGCAAAGTAAACAATATTTGCTTTGTTAGTGTTGGTCCTTTGCTGCTAGTGAATTATGATCAGGACATTGTGAGGTAGTTTCTTGCAGGAGGGAAAAAAAGAGTGTATTTTACCTTGATATACAGGTGTGCATTTGCAAAACGTCTATACTTCAGGACTCAGGTGTAAGTTGTACTAGTTTGATAAGACTATGGCTAAATTTTGTAATTTAAACAAGGATTTATCAAAGTCGCAGGGGCTTGTTTAGTTGTTGAGTAGAGTGCACACATGGATGCTTTAGTGATTTTCTGATGGATGACATGCTTAGTGTAAATCCTTGCTTATTAGTATCTTTTATCATGAGAAAGAATGGTGCCCTAGTCTGACACACAAACTACTCTGTGTCTTAGTTTTTCACTGTTGAATCCTTTACTATGCTCTATGCAAAGAAATTTCTCCTGAGCTAAAGTTTTTGAGTGTGTCCATCTATAATAGCTTCTTTTTTTTTTCCCATGACTTTCTCTCTGCAGAGCTTGAGAAACACATTCCTGATCTCCATGTGTTGATTTCGACCCCTTTTCATCCTGCCTATGTCACGGCTGAAAGGATCAAGAAGGCAAAAAATCTACAACTTCTGCTGACAGCTGGAATTGGATCAGATCATGTTGATCTGAAAGCTGCTGCTGCTGCTGGATTGACAGTAGCAGAGGTCACTGGAAGCAATACTGTCTCAGTTGCGGAAGATGAACTGATGCGAATCTTAATTCTTGTCCGAAATTTCTTACCTGGACATCATCAGGTTATCAAT-GGGGAGTGGAATGTTGCTGCAATTGCGCACAGAGCTTATGATTTGGA</genome_strand>
        <mrna_strand>GTTTTTACCAAGTACAAAACCCTTTGCTGTAAATCC--AAAAAATTCCGATGGCGATGAGTCGTGTAGCTTCTACAGCAGCTCGTGCTATTACTTCACCTTCATCCTTAGTTTTTACCAGAGAACTTCAG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCTTCCCCTGGCCCCAAAAAGATTGTGGGTGTTTTCTACAAAGCAAATGAATATGCTGAAATGAACCCCAACTTTTTGGGCTGTGCAGAAAATGCCTTGGGGATACGTGAATGGTTAGAATCTAAAGGTCATCAGTACATAGTCACTCCTGACAAAGAAGGACCAGATTGTG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGCTTGAGAAACACATTCCTGATCTCCATGTGTTGATTTCGACCCCTTTTCATCCTGCCTATGTCACGGCTGAAAGGATCAAGAAGGCAAAAAATCTACAACTACTGCTGACAGCTGGAATTGGATCAGATCATGTTGATCTGAAAGCTGCTGCTGCTGCTGGATTGACAGTAGCAGAGGTCACTGGAAGCAATACTGTCTCAGTTGCGGAAGATGAACTGATGCGAATCTTAATTCTTGTCCGAAATTTCTTGCCTGGACATCATCAGGTTATCAATGGGGGAGTGGAATGTTGCTGCAATTGCGCACAGAGCTTATGATTTGGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0236E02-u8qcS/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E401548" ref_strand="+" ref_description="SGN-E401548 [PPC-4-F15]">
      <seq>gtttttagcaaagtacaaaaccctttgctgtaaatccaaaaaattccgatggcgatgagtcgtgtagcttctacagcagctcgtgctattacttcaccttcatccttagtttttaccagagaacttcaggcttcccctggccccaaaaagattgtgggtgttttctacaaagcaaatgaatatgctgaaatgaaccccaactttttgggctgtgcagaaaatgccttggggatacgtgaatggttagaatctaaaggtcatcagtacatagtcactcctgacaaagaaggaccagattgtgagcttgagaaacacattcctgatctccatgtgttgatttcgaccccttttcatcctgcctatgtcacggctgaaaggatcaagaaggcaaaaaatctacaactactgctgacagctggaattggatcagatcatgttgatctgaaagctgctgctgctgctggattgaca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0236E02-u8qcS/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0236E02.1" temp_strand="+" temp_description="C02HBa0236E02.1  AC215430.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0236E02 sequenced_by:kribb upload_account_name:korea">
        <position start="65269" stop="68234"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="65560" g_stop="65689" g_length="130"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="129" r_length="129" r_score="0.931"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="65690" i_stop="66849" i_length="1160">
            <donor d_prob="1.000" d_score="0.98"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="66850" g_stop="67021" g_length="172"/>
          <reference_exon_boundary r_type="cDNA" r_start="130" r_stop="301" r_length="172" r_score="0.994"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="67022" i_stop="67764" i_length="743">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="0.987" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="67765" g_stop="67934" g_length="170"/>
          <reference_exon_boundary r_type="cDNA" r_start="302" r_stop="471" r_length="170" r_score="0.994"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0236E02.1" gen_strand="+" ref_id="SGN-E401548" ref_strand="+">
        <total_alignment_score>0.977</total_alignment_score>
        <cumulative_length_of_scored_exons>472</cumulative_length_of_scored_exons>
        <coverage percentage="1.002" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0236E02.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E401548" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="65560" e_stop="65689"/>
          <exon e_start="66850" e_stop="67021"/>
          <exon e_start="67765" e_stop="67934"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTTTTTAG-TAAGTACGAAACCCTTTTCTGTAAATCCAAAAAAAATTCCGATGGCGATGAGGCGTGTAGCTTCTACAGCAGCTCGTGCTATTGCTTCACCTTCATCCTTAGTTTTTACCAGAGAACTTCAGGTAACTAGCCATTTCTCCTCAATAGCCACTTTTTGTTGCTTTTGTTTTATATGACCTAGTTTTCGCCCTTTGATGAATTATCGGAAACCGGCACGGATCAACTCCGATTTTTCGAGAATCAAGTGAGTTGGAGATTGGAACAGAGGAAACTAAAGGAATTTAACCGTGTAAAGGAAAAAATTAAACACACTGTATTTGGTGCTCTACCCCTCGTCTCTTCTTTTTGGCTTTCCCCGTACTCTACACACCAAATGAAATGGCTCGGATATGAAAGGACTAATAACTTTTCAGTTTTCATTACTGCGTCCTTTTTTAAGCTTTCAGTTTTAATTTGCGTGAATATACCTAATTTTTATTAGGGTAGAGTTATATGTTTCAAATTAAATTGCTACCAAGTTAAATTTAAGAATGTTACATAAATTTAGAGACGGCAAGTTTATATACCAAGAAGGGTACTCCTTCATCCACAGAGAAACGGTGTCCAGTTCGAGTATGGGCGTGAATCTAGATATAGTTAATTCCAATGCAGATATCAGACATCGAGTGAGGAAAAAAAAGATTTTATTAATTTGTTATTTTTAGGTTGCTTTTCCTTTAACTGAAAATCTAACCCGGCAGGACCACAACAGTTCTTTTCCGATCATTACTAATGATACTTGATTTTCACGTGCGATTTCTGATATTTTTATACGGAGTAGGTGAAGAGTGAAATGTTTCACGGGTCTCAAGGACAATGGCAGCAGTGCTTCATTTTTTTTTGCATCTTCACGTGCTATATTATTACTTTGTTTATACTAGTTCGACTTGGAAAATCTTTTCATATTCAGTTGTCTGGGGAATAAATAAGATATTTCTTATTTTTTGATTAAAAAAAGAAGAAGATATTTCTTATTTAAAGAAGTGACAAATTGTACTAACTCATTTACCATGCCTAATATATTATATGTGACAATGATGATTTTTTTTAACTATTAATTGTTAGTTTGGACAAAAATGATCAAAGCAAGTATATTGAATAATGCTTATTTCTTGCCAACTGGTGCATCTACGAGATTATAGGAGTTGGATTATAATTTTAGCACATCCAGCATGCTTATATGACCTTAAAATATTCATGTATATTCTGTCCACTCACCTTTTATTTCTTCATTATTTTACAGGCTTCCCCTGGCCCCAAAAAGATTGTGGGTGTTTTCTACAAAGCAAATGAATATGCTGAAATGAACCCCAACTTTTTGGGCTGTGCAGAAAATGCCTTGGGGATACGTGAATGGTTAGAGTCTAAAGGTCATCAGTACATAGTCACTCCTGACAAAGAAGGACCAGATTGTGGTTAGTTCCTGCTAATCTATAATCTCTCATGTTCTATCCATTATCCCACTGAAGCCTATGCATTTCTAAAGATAATTTCTTTACCCTTCATGCTTGTACAACTAAACACATCTTAAAAGGAGTATTTTTGCATTTAAAACATGCATATATGTGCTGAAGTTTTTTAAAAATATATGGCTCACGTGAGGAGAATATAACGGTCATAGCAGGAACATTTATTTAGATAAAGAGCAAAGCAAAGTAAACAATATTTGCTTTGTTAGTGTTGGTCCTTTGCTGCTAGTGAATTATGATCAGGACATTGTGAGGTAGTTTCTTGCAGGAGGGAAAAAAAGAGTGTATTTTACCTTGATATACAGGTGTGCATTTGCAAAACGTCTATACTTCAGGACTCAGGTGTAAGTTGTACTAGTTTGATAAGACTATGGCTAAATTTTGTAATTTAAACAAGGATTTATCAAAGTCGCAGGGGCTTGTTTAGTTGTTGAGTAGAGTGCACACATGGATGCTTTAGTGATTTTCTGATGGATGACATGCTTAGTGTAAATCCTTGCTTATTAGTATCTTTTATCATGAGAAAGAATGGTGCCCTAGTCTGACACACAAACTACTCTGTGTCTTAGTTTTTCACTGTTGAATCCTTTACTATGCTCTATGCAAAGAAATTTCTCCTGAGCTAAAGTTTTTGAGTGTGTCCATCTATAATAGCTTCTTTTTTTTTTCCCATGACTTTCTCTCTGCAGAGCTTGAGAAACACATTCCTGATCTCCATGTGTTGATTTCGACCCCTTTTCATCCTGCCTATGTCACGGCTGAAAGGATCAAGAAGGCAAAAAATCTACAACTTCTGCTGACAGCTGGAATTGGATCAGATCATGTTGATCTGAAAGCTGCTGCTGCTGCTGGATTGACA</genome_strand>
        <mrna_strand>GTTTTTAGCAAAGTACAAAACCCTTTGCTGTAAATCC--AAAAAATTCCGATGGCGATGAGTCGTGTAGCTTCTACAGCAGCTCGTGCTATTACTTCACCTTCATCCTTAGTTTTTACCAGAGAACTTCAG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCTTCCCCTGGCCCCAAAAAGATTGTGGGTGTTTTCTACAAAGCAAATGAATATGCTGAAATGAACCCCAACTTTTTGGGCTGTGCAGAAAATGCCTTGGGGATACGTGAATGGTTAGAATCTAAAGGTCATCAGTACATAGTCACTCCTGACAAAGAAGGACCAGATTGTG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGCTTGAGAAACACATTCCTGATCTCCATGTGTTGATTTCGACCCCTTTTCATCCTGCCTATGTCACGGCTGAAAGGATCAAGAAGGCAAAAAATCTACAACTACTGCTGACAGCTGGAATTGGATCAGATCATGTTGATCTGAAAGCTGCTGCTGCTGCTGGATTGACA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0236E02-u8qcS/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E698063" ref_strand="+" ref_description="SGN-E698063 [FA05AF02]">
      <seq>cgtatacacgaaacccttttctgtaaatccaaaaaaaattccgatggcgatgaggcgtgtagcttctacagcagctcgtgctattgcttcaccttcatccttagtttttaccagagaacttcaggcttcccctggccccaaaaagattgtgggtgttttctacaaagcaaatgaatatgctgaaatgaaccccaactttttgggctgtgcagaaaatgccttggggatacgtgaatggttagagtctaaaggtcatcagtacatagtcactcctgacaaagaaggaccagattgtgagcttgagaaacacattcctgatctccatgtgttgatttcgaccccttttcatcctgcctatgtcacggctgaaaggatcaagaaggcaaaaaatctacaacttctgctgacagctggaattggatcagatcatgttgatctgaaagctgctgctgctgctggattgacagtagcagaggtcactggaagcaatactgtctcagttgcggaagatgaactgatgcgaatcttaattcttgtccgaaatttcttacctggacatcatcaggttatcaatggggagtggaatgttgctgcaattgcgcacagagcttatgatttggaaggcaagactgttggaactgttagtgcaggacgtattggcagacttttactccagcgattgaagccatttaactgtaatctactttaccatgaccgtcttaagatggattctgagctagagaatcaaattggagcaaagtttgaggaagatctcgataaaatgctctcgaaatgtgacatagtggtcatcaatacgcctcttacagagaaaacaaaagga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0236E02-u8qcS/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0236E02.1" temp_strand="+" temp_description="C02HBa0236E02.1  AC215430.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0236E02 sequenced_by:kribb upload_account_name:korea">
        <position start="65273" stop="68608"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="65566" g_stop="65689" g_length="124"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="124" r_length="124" r_score="0.968"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="65690" i_stop="66849" i_length="1160">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="66850" g_stop="67021" g_length="172"/>
          <reference_exon_boundary r_type="cDNA" r_start="125" r_stop="296" r_length="172" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="67022" i_stop="67764" i_length="743">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="0.987" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="67765" g_stop="68305" g_length="541"/>
          <reference_exon_boundary r_type="cDNA" r_start="297" r_stop="837" r_length="541" r_score="0.996"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0236E02.1" gen_strand="+" ref_id="SGN-E698063" ref_strand="+">
        <total_alignment_score>0.993</total_alignment_score>
        <cumulative_length_of_scored_exons>837</cumulative_length_of_scored_exons>
        <coverage percentage="0.995" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0236E02.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E698063" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="65566" e_stop="65689"/>
          <exon e_start="66850" e_stop="67021"/>
          <exon e_start="67765" e_stop="68305"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGTAAGTACGAAACCCTTTTCTGTAAATCCAAAAAAAATTCCGATGGCGATGAGGCGTGTAGCTTCTACAGCAGCTCGTGCTATTGCTTCACCTTCATCCTTAGTTTTTACCAGAGAACTTCAGGTAACTAGCCATTTCTCCTCAATAGCCACTTTTTGTTGCTTTTGTTTTATATGACCTAGTTTTCGCCCTTTGATGAATTATCGGAAACCGGCACGGATCAACTCCGATTTTTCGAGAATCAAGTGAGTTGGAGATTGGAACAGAGGAAACTAAAGGAATTTAACCGTGTAAAGGAAAAAATTAAACACACTGTATTTGGTGCTCTACCCCTCGTCTCTTCTTTTTGGCTTTCCCCGTACTCTACACACCAAATGAAATGGCTCGGATATGAAAGGACTAATAACTTTTCAGTTTTCATTACTGCGTCCTTTTTTAAGCTTTCAGTTTTAATTTGCGTGAATATACCTAATTTTTATTAGGGTAGAGTTATATGTTTCAAATTAAATTGCTACCAAGTTAAATTTAAGAATGTTACATAAATTTAGAGACGGCAAGTTTATATACCAAGAAGGGTACTCCTTCATCCACAGAGAAACGGTGTCCAGTTCGAGTATGGGCGTGAATCTAGATATAGTTAATTCCAATGCAGATATCAGACATCGAGTGAGGAAAAAAAAGATTTTATTAATTTGTTATTTTTAGGTTGCTTTTCCTTTAACTGAAAATCTAACCCGGCAGGACCACAACAGTTCTTTTCCGATCATTACTAATGATACTTGATTTTCACGTGCGATTTCTGATATTTTTATACGGAGTAGGTGAAGAGTGAAATGTTTCACGGGTCTCAAGGACAATGGCAGCAGTGCTTCATTTTTTTTTGCATCTTCACGTGCTATATTATTACTTTGTTTATACTAGTTCGACTTGGAAAATCTTTTCATATTCAGTTGTCTGGGGAATAAATAAGATATTTCTTATTTTTTGATTAAAAAAAGAAGAAGATATTTCTTATTTAAAGAAGTGACAAATTGTACTAACTCATTTACCATGCCTAATATATTATATGTGACAATGATGATTTTTTTTAACTATTAATTGTTAGTTTGGACAAAAATGATCAAAGCAAGTATATTGAATAATGCTTATTTCTTGCCAACTGGTGCATCTACGAGATTATAGGAGTTGGATTATAATTTTAGCACATCCAGCATGCTTATATGACCTTAAAATATTCATGTATATTCTGTCCACTCACCTTTTATTTCTTCATTATTTTACAGGCTTCCCCTGGCCCCAAAAAGATTGTGGGTGTTTTCTACAAAGCAAATGAATATGCTGAAATGAACCCCAACTTTTTGGGCTGTGCAGAAAATGCCTTGGGGATACGTGAATGGTTAGAGTCTAAAGGTCATCAGTACATAGTCACTCCTGACAAAGAAGGACCAGATTGTGGTTAGTTCCTGCTAATCTATAATCTCTCATGTTCTATCCATTATCCCACTGAAGCCTATGCATTTCTAAAGATAATTTCTTTACCCTTCATGCTTGTACAACTAAACACATCTTAAAAGGAGTATTTTTGCATTTAAAACATGCATATATGTGCTGAAGTTTTTTAAAAATATATGGCTCACGTGAGGAGAATATAACGGTCATAGCAGGAACATTTATTTAGATAAAGAGCAAAGCAAAGTAAACAATATTTGCTTTGTTAGTGTTGGTCCTTTGCTGCTAGTGAATTATGATCAGGACATTGTGAGGTAGTTTCTTGCAGGAGGGAAAAAAAGAGTGTATTTTACCTTGATATACAGGTGTGCATTTGCAAAACGTCTATACTTCAGGACTCAGGTGTAAGTTGTACTAGTTTGATAAGACTATGGCTAAATTTTGTAATTTAAACAAGGATTTATCAAAGTCGCAGGGGCTTGTTTAGTTGTTGAGTAGAGTGCACACATGGATGCTTTAGTGATTTTCTGATGGATGACATGCTTAGTGTAAATCCTTGCTTATTAGTATCTTTTATCATGAGAAAGAATGGTGCCCTAGTCTGACACACAAACTACTCTGTGTCTTAGTTTTTCACTGTTGAATCCTTTACTATGCTCTATGCAAAGAAATTTCTCCTGAGCTAAAGTTTTTGAGTGTGTCCATCTATAATAGCTTCTTTTTTTTTTCCCATGACTTTCTCTCTGCAGAGCTTGAGAAACACATTCCTGATCTCCATGTGTTGATTTCGACCCCTTTTCATCCTGCCTATGTCACGGCTGAAAGGATCAAGAAGGCAAAAAATCTACAACTTCTGCTGACAGCTGGAATTGGATCAGATCATGTTGATCTGAAAGCTGCTGCTGCTGCTGGATTGACAGTAGCAGAGGTCACTGGAAGCAATACTGTCTCAGTTGCGGAAGATGAACTGATGCGAATCTTAATTCTTGTCCGAAATTTCTTACCTGGACATCATCAGGTTATCAATGGGGAGTGGAATGTTGCTGCAATTGCGCACAGAGCTTATGATTTGGAAGGCAAGACTGTTGGAACTGTTGGTGCAGGACGTATTGGCAGACTTTTACTCCAGCGATTGAAGCCATTTAACTGTAATCTACTTTACCATGACCGTCTTAAGATGGATTCTGAGCTAGAGAATCAAATTGGAGCAAAGTTTGAGGAAGATCTCGATAAGATGCTCTCGAAATGTGACATAGTGGTCATCAATACGCCTCTTACAGAGAAAACAAA</genome_strand>
        <mrna_strand>CGTATACACGAAACCCTTTTCTGTAAATCCAAAAAAAATTCCGATGGCGATGAGGCGTGTAGCTTCTACAGCAGCTCGTGCTATTGCTTCACCTTCATCCTTAGTTTTTACCAGAGAACTTCAG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCTTCCCCTGGCCCCAAAAAGATTGTGGGTGTTTTCTACAAAGCAAATGAATATGCTGAAATGAACCCCAACTTTTTGGGCTGTGCAGAAAATGCCTTGGGGATACGTGAATGGTTAGAGTCTAAAGGTCATCAGTACATAGTCACTCCTGACAAAGAAGGACCAGATTGTG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGCTTGAGAAACACATTCCTGATCTCCATGTGTTGATTTCGACCCCTTTTCATCCTGCCTATGTCACGGCTGAAAGGATCAAGAAGGCAAAAAATCTACAACTTCTGCTGACAGCTGGAATTGGATCAGATCATGTTGATCTGAAAGCTGCTGCTGCTGCTGGATTGACAGTAGCAGAGGTCACTGGAAGCAATACTGTCTCAGTTGCGGAAGATGAACTGATGCGAATCTTAATTCTTGTCCGAAATTTCTTACCTGGACATCATCAGGTTATCAATGGGGAGTGGAATGTTGCTGCAATTGCGCACAGAGCTTATGATTTGGAAGGCAAGACTGTTGGAACTGTTAGTGCAGGACGTATTGGCAGACTTTTACTCCAGCGATTGAAGCCATTTAACTGTAATCTACTTTACCATGACCGTCTTAAGATGGATTCTGAGCTAGAGAATCAAATTGGAGCAAAGTTTGAGGAAGATCTCGATAAAATGCTCTCGAAATGTGACATAGTGGTCATCAATACGCCTCTTACAGAGAAAACAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0236E02-u8qcS/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E276583" ref_strand="+" ref_description="SGN-E276583 [cLEN-17-L17]">
      <seq>cgaaacccttttctgtaaatccaaaaaaattccgatggcgatgaggcgtgtagcttctacagcagctcgtgctattgcttcaccttcatccttagtttttaccagagaacttcaggcttcccctggccccaaaaagattgtgggtgttttctacaaagcaaatgaatatgctgaaatgaaccccaactttttgggctgtgcagaaaatgccttggggatacgtgaatggttagagtctaaaggtcatcagtacatagtcactcctgacaaagaaggaccagattgtgagcttgagaaacacattcctgatctccatgtgttgatttcgaccccttttcatcctgcctatgtcacggctgaaaggatcaagaaggcaaaaaatctacaacttctgctgacagctggaattggatcagatcatgttgatctgaaagctgctgctgctgctggattgacagtagcagaggtcactggaagcaatactgtctcagttgcggaagatgaactgatgcgaatcttaattcttgtccgaaatttcttacctggacatcatcaggttatcaatggggagtggaatgttgctgcaattgcgcacagagcttatgatttgga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0236E02-u8qcS/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0236E02.1" temp_strand="+" temp_description="C02HBa0236E02.1  AC215430.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0236E02 sequenced_by:kribb upload_account_name:korea">
        <position start="65274" stop="68389"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="65574" g_stop="65689" g_length="116"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="115" r_length="115" r_score="0.991"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="65690" i_stop="66849" i_length="1160">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="66850" g_stop="67021" g_length="172"/>
          <reference_exon_boundary r_type="cDNA" r_start="116" r_stop="287" r_length="172" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="67022" i_stop="67764" i_length="743">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="0.987" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="67765" g_stop="68089" g_length="325"/>
          <reference_exon_boundary r_type="cDNA" r_start="288" r_stop="612" r_length="325" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0236E02.1" gen_strand="+" ref_id="SGN-E276583" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>613</cumulative_length_of_scored_exons>
        <coverage percentage="1.002" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0236E02.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E276583" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="65574" e_stop="65689"/>
          <exon e_start="66850" e_stop="67021"/>
          <exon e_start="67765" e_stop="68089"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CGAAACCCTTTTCTGTAAATCCAAAAAAAATTCCGATGGCGATGAGGCGTGTAGCTTCTACAGCAGCTCGTGCTATTGCTTCACCTTCATCCTTAGTTTTTACCAGAGAACTTCAGGTAACTAGCCATTTCTCCTCAATAGCCACTTTTTGTTGCTTTTGTTTTATATGACCTAGTTTTCGCCCTTTGATGAATTATCGGAAACCGGCACGGATCAACTCCGATTTTTCGAGAATCAAGTGAGTTGGAGATTGGAACAGAGGAAACTAAAGGAATTTAACCGTGTAAAGGAAAAAATTAAACACACTGTATTTGGTGCTCTACCCCTCGTCTCTTCTTTTTGGCTTTCCCCGTACTCTACACACCAAATGAAATGGCTCGGATATGAAAGGACTAATAACTTTTCAGTTTTCATTACTGCGTCCTTTTTTAAGCTTTCAGTTTTAATTTGCGTGAATATACCTAATTTTTATTAGGGTAGAGTTATATGTTTCAAATTAAATTGCTACCAAGTTAAATTTAAGAATGTTACATAAATTTAGAGACGGCAAGTTTATATACCAAGAAGGGTACTCCTTCATCCACAGAGAAACGGTGTCCAGTTCGAGTATGGGCGTGAATCTAGATATAGTTAATTCCAATGCAGATATCAGACATCGAGTGAGGAAAAAAAAGATTTTATTAATTTGTTATTTTTAGGTTGCTTTTCCTTTAACTGAAAATCTAACCCGGCAGGACCACAACAGTTCTTTTCCGATCATTACTAATGATACTTGATTTTCACGTGCGATTTCTGATATTTTTATACGGAGTAGGTGAAGAGTGAAATGTTTCACGGGTCTCAAGGACAATGGCAGCAGTGCTTCATTTTTTTTTGCATCTTCACGTGCTATATTATTACTTTGTTTATACTAGTTCGACTTGGAAAATCTTTTCATATTCAGTTGTCTGGGGAATAAATAAGATATTTCTTATTTTTTGATTAAAAAAAGAAGAAGATATTTCTTATTTAAAGAAGTGACAAATTGTACTAACTCATTTACCATGCCTAATATATTATATGTGACAATGATGATTTTTTTTAACTATTAATTGTTAGTTTGGACAAAAATGATCAAAGCAAGTATATTGAATAATGCTTATTTCTTGCCAACTGGTGCATCTACGAGATTATAGGAGTTGGATTATAATTTTAGCACATCCAGCATGCTTATATGACCTTAAAATATTCATGTATATTCTGTCCACTCACCTTTTATTTCTTCATTATTTTACAGGCTTCCCCTGGCCCCAAAAAGATTGTGGGTGTTTTCTACAAAGCAAATGAATATGCTGAAATGAACCCCAACTTTTTGGGCTGTGCAGAAAATGCCTTGGGGATACGTGAATGGTTAGAGTCTAAAGGTCATCAGTACATAGTCACTCCTGACAAAGAAGGACCAGATTGTGGTTAGTTCCTGCTAATCTATAATCTCTCATGTTCTATCCATTATCCCACTGAAGCCTATGCATTTCTAAAGATAATTTCTTTACCCTTCATGCTTGTACAACTAAACACATCTTAAAAGGAGTATTTTTGCATTTAAAACATGCATATATGTGCTGAAGTTTTTTAAAAATATATGGCTCACGTGAGGAGAATATAACGGTCATAGCAGGAACATTTATTTAGATAAAGAGCAAAGCAAAGTAAACAATATTTGCTTTGTTAGTGTTGGTCCTTTGCTGCTAGTGAATTATGATCAGGACATTGTGAGGTAGTTTCTTGCAGGAGGGAAAAAAAGAGTGTATTTTACCTTGATATACAGGTGTGCATTTGCAAAACGTCTATACTTCAGGACTCAGGTGTAAGTTGTACTAGTTTGATAAGACTATGGCTAAATTTTGTAATTTAAACAAGGATTTATCAAAGTCGCAGGGGCTTGTTTAGTTGTTGAGTAGAGTGCACACATGGATGCTTTAGTGATTTTCTGATGGATGACATGCTTAGTGTAAATCCTTGCTTATTAGTATCTTTTATCATGAGAAAGAATGGTGCCCTAGTCTGACACACAAACTACTCTGTGTCTTAGTTTTTCACTGTTGAATCCTTTACTATGCTCTATGCAAAGAAATTTCTCCTGAGCTAAAGTTTTTGAGTGTGTCCATCTATAATAGCTTCTTTTTTTTTTCCCATGACTTTCTCTCTGCAGAGCTTGAGAAACACATTCCTGATCTCCATGTGTTGATTTCGACCCCTTTTCATCCTGCCTATGTCACGGCTGAAAGGATCAAGAAGGCAAAAAATCTACAACTTCTGCTGACAGCTGGAATTGGATCAGATCATGTTGATCTGAAAGCTGCTGCTGCTGCTGGATTGACAGTAGCAGAGGTCACTGGAAGCAATACTGTCTCAGTTGCGGAAGATGAACTGATGCGAATCTTAATTCTTGTCCGAAATTTCTTACCTGGACATCATCAGGTTATCAATGGGGAGTGGAATGTTGCTGCAATTGCGCACAGAGCTTATGATTTGGA</genome_strand>
        <mrna_strand>CGAAACCCTTTTCTGTAAATCC-AAAAAAATTCCGATGGCGATGAGGCGTGTAGCTTCTACAGCAGCTCGTGCTATTGCTTCACCTTCATCCTTAGTTTTTACCAGAGAACTTCAG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCTTCCCCTGGCCCCAAAAAGATTGTGGGTGTTTTCTACAAAGCAAATGAATATGCTGAAATGAACCCCAACTTTTTGGGCTGTGCAGAAAATGCCTTGGGGATACGTGAATGGTTAGAGTCTAAAGGTCATCAGTACATAGTCACTCCTGACAAAGAAGGACCAGATTGTG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGCTTGAGAAACACATTCCTGATCTCCATGTGTTGATTTCGACCCCTTTTCATCCTGCCTATGTCACGGCTGAAAGGATCAAGAAGGCAAAAAATCTACAACTTCTGCTGACAGCTGGAATTGGATCAGATCATGTTGATCTGAAAGCTGCTGCTGCTGCTGGATTGACAGTAGCAGAGGTCACTGGAAGCAATACTGTCTCAGTTGCGGAAGATGAACTGATGCGAATCTTAATTCTTGTCCGAAATTTCTTACCTGGACATCATCAGGTTATCAATGGGGAGTGGAATGTTGCTGCAATTGCGCACAGAGCTTATGATTTGGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0236E02-u8qcS/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E441719" ref_strand="+" ref_description="SGN-E441719 [cSTA-31-O19]">
      <seq>aaaaccctttgctgtaaatccaaaaaattccgatggcgatgagtcgtgtagcttctacagcagctcgtgctattacttcaccttcatccttagtttttaccagagaacttcaggcttcccctggccccaaaaagattgtgggtgttttctacaaagcaaatgaatatgctgaaatgaaccccaactttttgggctgtgcagaaaatgccttggggatacgtgaatggttagaatctaaaggtcatcagtacatagtcactcctgacaaagaaggaccggattgtgagcttgagaaacacattcctgatctccatgtgttgatttcgaccccttttcatcctgcctatgtcacggctgaaaggatcaagaaggcaaaaaatctacaactactgctgacagctggaattggatcagatcatgttgatctgaaagctgctgctgctgctggattgacagtagcagaggtcactggaagcaatactgtctcagttgcggaagatgaactgatgcgaatcttaattcttgtccgaaatttcttgcctggacatcatcaggttatcaatggggagtgggatgttgctgcaattgcgcacagagcttatgatttggaaggcaagactgttggaactgnttggtgcaggacgtattggcagacttttactccaacgattgaagccatttaactggtatctactttaccatgaccgtcttaagatggattctgagctagagaatcaaatt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0236E02-u8qcS/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0236E02.1" temp_strand="+" temp_description="C02HBa0236E02.1  AC215430.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0236E02 sequenced_by:kribb upload_account_name:korea">
        <position start="65276" stop="68519"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="65575" g_stop="65689" g_length="115"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="113" r_length="113" r_score="0.948"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="65690" i_stop="66849" i_length="1160">
            <donor d_prob="1.000" d_score="0.98"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="66850" g_stop="67021" g_length="172"/>
          <reference_exon_boundary r_type="cDNA" r_start="114" r_stop="285" r_length="172" r_score="0.988"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="67022" i_stop="67764" i_length="743">
            <donor d_prob="0.994" d_score="0.98"/>
            <acceptor a_prob="0.987" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="67765" g_stop="68219" g_length="455"/>
          <reference_exon_boundary r_type="cDNA" r_start="286" r_stop="741" r_length="456" r_score="0.982"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0236E02.1" gen_strand="+" ref_id="SGN-E441719" ref_strand="+">
        <total_alignment_score>0.978</total_alignment_score>
        <cumulative_length_of_scored_exons>742</cumulative_length_of_scored_exons>
        <coverage percentage="1.001" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0236E02.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E441719" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="65575" e_stop="65689"/>
          <exon e_start="66850" e_stop="67021"/>
          <exon e_start="67765" e_stop="68219"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAAACCCTTTTCTGTAAATCCAAAAAAAATTCCGATGGCGATGAGGCGTGTAGCTTCTACAGCAGCTCGTGCTATTGCTTCACCTTCATCCTTAGTTTTTACCAGAGAACTTCAGGTAACTAGCCATTTCTCCTCAATAGCCACTTTTTGTTGCTTTTGTTTTATATGACCTAGTTTTCGCCCTTTGATGAATTATCGGAAACCGGCACGGATCAACTCCGATTTTTCGAGAATCAAGTGAGTTGGAGATTGGAACAGAGGAAACTAAAGGAATTTAACCGTGTAAAGGAAAAAATTAAACACACTGTATTTGGTGCTCTACCCCTCGTCTCTTCTTTTTGGCTTTCCCCGTACTCTACACACCAAATGAAATGGCTCGGATATGAAAGGACTAATAACTTTTCAGTTTTCATTACTGCGTCCTTTTTTAAGCTTTCAGTTTTAATTTGCGTGAATATACCTAATTTTTATTAGGGTAGAGTTATATGTTTCAAATTAAATTGCTACCAAGTTAAATTTAAGAATGTTACATAAATTTAGAGACGGCAAGTTTATATACCAAGAAGGGTACTCCTTCATCCACAGAGAAACGGTGTCCAGTTCGAGTATGGGCGTGAATCTAGATATAGTTAATTCCAATGCAGATATCAGACATCGAGTGAGGAAAAAAAAGATTTTATTAATTTGTTATTTTTAGGTTGCTTTTCCTTTAACTGAAAATCTAACCCGGCAGGACCACAACAGTTCTTTTCCGATCATTACTAATGATACTTGATTTTCACGTGCGATTTCTGATATTTTTATACGGAGTAGGTGAAGAGTGAAATGTTTCACGGGTCTCAAGGACAATGGCAGCAGTGCTTCATTTTTTTTTGCATCTTCACGTGCTATATTATTACTTTGTTTATACTAGTTCGACTTGGAAAATCTTTTCATATTCAGTTGTCTGGGGAATAAATAAGATATTTCTTATTTTTTGATTAAAAAAAGAAGAAGATATTTCTTATTTAAAGAAGTGACAAATTGTACTAACTCATTTACCATGCCTAATATATTATATGTGACAATGATGATTTTTTTTAACTATTAATTGTTAGTTTGGACAAAAATGATCAAAGCAAGTATATTGAATAATGCTTATTTCTTGCCAACTGGTGCATCTACGAGATTATAGGAGTTGGATTATAATTTTAGCACATCCAGCATGCTTATATGACCTTAAAATATTCATGTATATTCTGTCCACTCACCTTTTATTTCTTCATTATTTTACAGGCTTCCCCTGGCCCCAAAAAGATTGTGGGTGTTTTCTACAAAGCAAATGAATATGCTGAAATGAACCCCAACTTTTTGGGCTGTGCAGAAAATGCCTTGGGGATACGTGAATGGTTAGAGTCTAAAGGTCATCAGTACATAGTCACTCCTGACAAAGAAGGACCAGATTGTGGTTAGTTCCTGCTAATCTATAATCTCTCATGTTCTATCCATTATCCCACTGAAGCCTATGCATTTCTAAAGATAATTTCTTTACCCTTCATGCTTGTACAACTAAACACATCTTAAAAGGAGTATTTTTGCATTTAAAACATGCATATATGTGCTGAAGTTTTTTAAAAATATATGGCTCACGTGAGGAGAATATAACGGTCATAGCAGGAACATTTATTTAGATAAAGAGCAAAGCAAAGTAAACAATATTTGCTTTGTTAGTGTTGGTCCTTTGCTGCTAGTGAATTATGATCAGGACATTGTGAGGTAGTTTCTTGCAGGAGGGAAAAAAAGAGTGTATTTTACCTTGATATACAGGTGTGCATTTGCAAAACGTCTATACTTCAGGACTCAGGTGTAAGTTGTACTAGTTTGATAAGACTATGGCTAAATTTTGTAATTTAAACAAGGATTTATCAAAGTCGCAGGGGCTTGTTTAGTTGTTGAGTAGAGTGCACACATGGATGCTTTAGTGATTTTCTGATGGATGACATGCTTAGTGTAAATCCTTGCTTATTAGTATCTTTTATCATGAGAAAGAATGGTGCCCTAGTCTGACACACAAACTACTCTGTGTCTTAGTTTTTCACTGTTGAATCCTTTACTATGCTCTATGCAAAGAAATTTCTCCTGAGCTAAAGTTTTTGAGTGTGTCCATCTATAATAGCTTCTTTTTTTTTTCCCATGACTTTCTCTCTGCAGAGCTTGAGAAACACATTCCTGATCTCCATGTGTTGATTTCGACCCCTTTTCATCCTGCCTATGTCACGGCTGAAAGGATCAAGAAGGCAAAAAATCTACAACTTCTGCTGACAGCTGGAATTGGATCAGATCATGTTGATCTGAAAGCTGCTGCTGCTGCTGGATTGACAGTAGCAGAGGTCACTGGAAGCAATACTGTCTCAGTTGCGGAAGATGAACTGATGCGAATCTTAATTCTTGTCCGAAATTTCTTACCTGGACATCATCAGGTTATCAATGGGGAGTGGAATGTTGCTGCAATTGCGCACAGAGCTTATGATTTGGAAGGCAAGACTGTTGGAACTG-TTGGTGCAGGACGTATTGGCAGACTTTTACTCCAGCGATTGAAGCCATTTAACTGTAATCTACTTTACCATGACCGTCTTAAGATGGATTCTGAGCTAGAGAATCAAATT</genome_strand>
        <mrna_strand>AAAACCCTTTGCTGTAAATCCAA--AAAATTCCGATGGCGATGAGTCGTGTAGCTTCTACAGCAGCTCGTGCTATTACTTCACCTTCATCCTTAGTTTTTACCAGAGAACTTCAG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCTTCCCCTGGCCCCAAAAAGATTGTGGGTGTTTTCTACAAAGCAAATGAATATGCTGAAATGAACCCCAACTTTTTGGGCTGTGCAGAAAATGCCTTGGGGATACGTGAATGGTTAGAATCTAAAGGTCATCAGTACATAGTCACTCCTGACAAAGAAGGACCGGATTGTG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGCTTGAGAAACACATTCCTGATCTCCATGTGTTGATTTCGACCCCTTTTCATCCTGCCTATGTCACGGCTGAAAGGATCAAGAAGGCAAAAAATCTACAACTACTGCTGACAGCTGGAATTGGATCAGATCATGTTGATCTGAAAGCTGCTGCTGCTGCTGGATTGACAGTAGCAGAGGTCACTGGAAGCAATACTGTCTCAGTTGCGGAAGATGAACTGATGCGAATCTTAATTCTTGTCCGAAATTTCTTGCCTGGACATCATCAGGTTATCAATGGGGAGTGGGATGTTGCTGCAATTGCGCACAGAGCTTATGATTTGGAAGGCAAGACTGTTGGAACTGNTTGGTGCAGGACGTATTGGCAGACTTTTACTCCAACGATTGAAGCCATTTAACTGGTATCTACTTTACCATGACCGTCTTAAGATGGATTCTGAGCTAGAGAATCAAATT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0236E02-u8qcS/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E447717" ref_strand="+" ref_description="SGN-E447717 [cSTS-1-K21]">
      <seq>aaaaccctttgctgtaaatccaaaaaattccgatggcgatgagtcgtgtagcttctacagcagctcgtgctattacttcaccttcatccttagtttttaccagagaacttcaggcttcccctggccccaaaaagattgtgggtgttttctacaaagcaaatgaatatgctgaaatgaaccccaactttttgggctgtgcagaaaatgccttggggatacgtgaatggttagaatctaaaggtcatcagtacatagtcactcctgacaaagaaggaccggattgtgagcttgagaaacacattcctgatctccatgtgttgatttcgaccccttttcatcctgcctatgtcacggctgaaaggatcaagaaggcaaaaaatctacaactactgctgacagctggaattggatcagatcatgttgatctgaaagctgctgctgctgctggattgacagtagcagaggtcactggaagcaatactgtctcagttgcggaagatgaactgatgcgaatcttaattcttgtccgaaatttcttgcctggacatcatcaggttatcaatggggagtggaatgttgctgcaattgcgcacagagcttatgatttggaaggcaagactgttggaactggtggtgcaggacgtattggcagacttttactccaacgattgaagccatttaactgtaatctac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0236E02-u8qcS/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0236E02.1" temp_strand="+" temp_description="C02HBa0236E02.1  AC215430.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0236E02 sequenced_by:kribb upload_account_name:korea">
        <position start="65276" stop="68472"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="65575" g_stop="65689" g_length="115"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="113" r_length="113" r_score="0.948"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="65690" i_stop="66849" i_length="1160">
            <donor d_prob="1.000" d_score="0.98"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="66850" g_stop="67021" g_length="172"/>
          <reference_exon_boundary r_type="cDNA" r_start="114" r_stop="285" r_length="172" r_score="0.988"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="67022" i_stop="67764" i_length="743">
            <donor d_prob="0.994" d_score="0.98"/>
            <acceptor a_prob="0.987" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="67765" g_stop="68172" g_length="408"/>
          <reference_exon_boundary r_type="cDNA" r_start="286" r_stop="693" r_length="408" r_score="0.990"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0236E02.1" gen_strand="+" ref_id="SGN-E447717" ref_strand="+">
        <total_alignment_score>0.983</total_alignment_score>
        <cumulative_length_of_scored_exons>695</cumulative_length_of_scored_exons>
        <coverage percentage="1.003" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0236E02.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E447717" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="65575" e_stop="65689"/>
          <exon e_start="66850" e_stop="67021"/>
          <exon e_start="67765" e_stop="68172"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAAACCCTTTTCTGTAAATCCAAAAAAAATTCCGATGGCGATGAGGCGTGTAGCTTCTACAGCAGCTCGTGCTATTGCTTCACCTTCATCCTTAGTTTTTACCAGAGAACTTCAGGTAACTAGCCATTTCTCCTCAATAGCCACTTTTTGTTGCTTTTGTTTTATATGACCTAGTTTTCGCCCTTTGATGAATTATCGGAAACCGGCACGGATCAACTCCGATTTTTCGAGAATCAAGTGAGTTGGAGATTGGAACAGAGGAAACTAAAGGAATTTAACCGTGTAAAGGAAAAAATTAAACACACTGTATTTGGTGCTCTACCCCTCGTCTCTTCTTTTTGGCTTTCCCCGTACTCTACACACCAAATGAAATGGCTCGGATATGAAAGGACTAATAACTTTTCAGTTTTCATTACTGCGTCCTTTTTTAAGCTTTCAGTTTTAATTTGCGTGAATATACCTAATTTTTATTAGGGTAGAGTTATATGTTTCAAATTAAATTGCTACCAAGTTAAATTTAAGAATGTTACATAAATTTAGAGACGGCAAGTTTATATACCAAGAAGGGTACTCCTTCATCCACAGAGAAACGGTGTCCAGTTCGAGTATGGGCGTGAATCTAGATATAGTTAATTCCAATGCAGATATCAGACATCGAGTGAGGAAAAAAAAGATTTTATTAATTTGTTATTTTTAGGTTGCTTTTCCTTTAACTGAAAATCTAACCCGGCAGGACCACAACAGTTCTTTTCCGATCATTACTAATGATACTTGATTTTCACGTGCGATTTCTGATATTTTTATACGGAGTAGGTGAAGAGTGAAATGTTTCACGGGTCTCAAGGACAATGGCAGCAGTGCTTCATTTTTTTTTGCATCTTCACGTGCTATATTATTACTTTGTTTATACTAGTTCGACTTGGAAAATCTTTTCATATTCAGTTGTCTGGGGAATAAATAAGATATTTCTTATTTTTTGATTAAAAAAAGAAGAAGATATTTCTTATTTAAAGAAGTGACAAATTGTACTAACTCATTTACCATGCCTAATATATTATATGTGACAATGATGATTTTTTTTAACTATTAATTGTTAGTTTGGACAAAAATGATCAAAGCAAGTATATTGAATAATGCTTATTTCTTGCCAACTGGTGCATCTACGAGATTATAGGAGTTGGATTATAATTTTAGCACATCCAGCATGCTTATATGACCTTAAAATATTCATGTATATTCTGTCCACTCACCTTTTATTTCTTCATTATTTTACAGGCTTCCCCTGGCCCCAAAAAGATTGTGGGTGTTTTCTACAAAGCAAATGAATATGCTGAAATGAACCCCAACTTTTTGGGCTGTGCAGAAAATGCCTTGGGGATACGTGAATGGTTAGAGTCTAAAGGTCATCAGTACATAGTCACTCCTGACAAAGAAGGACCAGATTGTGGTTAGTTCCTGCTAATCTATAATCTCTCATGTTCTATCCATTATCCCACTGAAGCCTATGCATTTCTAAAGATAATTTCTTTACCCTTCATGCTTGTACAACTAAACACATCTTAAAAGGAGTATTTTTGCATTTAAAACATGCATATATGTGCTGAAGTTTTTTAAAAATATATGGCTCACGTGAGGAGAATATAACGGTCATAGCAGGAACATTTATTTAGATAAAGAGCAAAGCAAAGTAAACAATATTTGCTTTGTTAGTGTTGGTCCTTTGCTGCTAGTGAATTATGATCAGGACATTGTGAGGTAGTTTCTTGCAGGAGGGAAAAAAAGAGTGTATTTTACCTTGATATACAGGTGTGCATTTGCAAAACGTCTATACTTCAGGACTCAGGTGTAAGTTGTACTAGTTTGATAAGACTATGGCTAAATTTTGTAATTTAAACAAGGATTTATCAAAGTCGCAGGGGCTTGTTTAGTTGTTGAGTAGAGTGCACACATGGATGCTTTAGTGATTTTCTGATGGATGACATGCTTAGTGTAAATCCTTGCTTATTAGTATCTTTTATCATGAGAAAGAATGGTGCCCTAGTCTGACACACAAACTACTCTGTGTCTTAGTTTTTCACTGTTGAATCCTTTACTATGCTCTATGCAAAGAAATTTCTCCTGAGCTAAAGTTTTTGAGTGTGTCCATCTATAATAGCTTCTTTTTTTTTTCCCATGACTTTCTCTCTGCAGAGCTTGAGAAACACATTCCTGATCTCCATGTGTTGATTTCGACCCCTTTTCATCCTGCCTATGTCACGGCTGAAAGGATCAAGAAGGCAAAAAATCTACAACTTCTGCTGACAGCTGGAATTGGATCAGATCATGTTGATCTGAAAGCTGCTGCTGCTGCTGGATTGACAGTAGCAGAGGTCACTGGAAGCAATACTGTCTCAGTTGCGGAAGATGAACTGATGCGAATCTTAATTCTTGTCCGAAATTTCTTACCTGGACATCATCAGGTTATCAATGGGGAGTGGAATGTTGCTGCAATTGCGCACAGAGCTTATGATTTGGAAGGCAAGACTGTTGGAACTGTTGGTGCAGGACGTATTGGCAGACTTTTACTCCAGCGATTGAAGCCATTTAACTGTAATCTAC</genome_strand>
        <mrna_strand>AAAACCCTTTGCTGTAAATCCAA--AAAATTCCGATGGCGATGAGTCGTGTAGCTTCTACAGCAGCTCGTGCTATTACTTCACCTTCATCCTTAGTTTTTACCAGAGAACTTCAG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCTTCCCCTGGCCCCAAAAAGATTGTGGGTGTTTTCTACAAAGCAAATGAATATGCTGAAATGAACCCCAACTTTTTGGGCTGTGCAGAAAATGCCTTGGGGATACGTGAATGGTTAGAATCTAAAGGTCATCAGTACATAGTCACTCCTGACAAAGAAGGACCGGATTGTG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGCTTGAGAAACACATTCCTGATCTCCATGTGTTGATTTCGACCCCTTTTCATCCTGCCTATGTCACGGCTGAAAGGATCAAGAAGGCAAAAAATCTACAACTACTGCTGACAGCTGGAATTGGATCAGATCATGTTGATCTGAAAGCTGCTGCTGCTGCTGGATTGACAGTAGCAGAGGTCACTGGAAGCAATACTGTCTCAGTTGCGGAAGATGAACTGATGCGAATCTTAATTCTTGTCCGAAATTTCTTGCCTGGACATCATCAGGTTATCAATGGGGAGTGGAATGTTGCTGCAATTGCGCACAGAGCTTATGATTTGGAAGGCAAGACTGTTGGAACTGGTGGTGCAGGACGTATTGGCAGACTTTTACTCCAACGATTGAAGCCATTTAACTGTAATCTAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0236E02-u8qcS/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E441720" ref_strand="+" ref_description="SGN-E441720 [cSTA-31-O19]">
      <seq>aaaaccctttgctgtaaatccaaaaaattccgatggcgatgagtcgtgtagcttctacagcagctcgtgctattacttcaccttcatccttagtttttaccagagaacttcaggcttcccctggccccaaaaagattgtgggtgttttctacaaagcaaatgaatatgctgaaatgaaccccaactttttgggctgtgcagaaaatgccttggggatacgtgaatggttagaatctaaaggtcatcagtacatagtcactcctgacaaagaaggaccggattgtgagcttgagaaacacattcctgatctccatgtgttgatttcgaccccttttcatcctgcctatgtcacggctgaaaggatcaagaaggcaaaaaatctacaactactgctgacagctggaattggatcagatcatgttgatctgaaagctgctgctgctgctggattgacagtagcagaggtcactggaagcaatactgtctcagttgcggaagatgaactgatgcgaatcttaattcttgtccgaaatttcttgcctggacatcatcaggttatcaatggggagtggaatgttgct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0236E02-u8qcS/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0236E02.1" temp_strand="+" temp_description="C02HBa0236E02.1  AC215430.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0236E02 sequenced_by:kribb upload_account_name:korea">
        <position start="65276" stop="68360"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="65575" g_stop="65689" g_length="115"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="113" r_length="113" r_score="0.948"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="65690" i_stop="66849" i_length="1160">
            <donor d_prob="1.000" d_score="0.98"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="66850" g_stop="67021" g_length="172"/>
          <reference_exon_boundary r_type="cDNA" r_start="114" r_stop="285" r_length="172" r_score="0.988"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="67022" i_stop="67764" i_length="743">
            <donor d_prob="0.994" d_score="0.98"/>
            <acceptor a_prob="0.987" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="67765" g_stop="68060" g_length="296"/>
          <reference_exon_boundary r_type="cDNA" r_start="286" r_stop="581" r_length="296" r_score="0.993"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0236E02.1" gen_strand="+" ref_id="SGN-E441720" ref_strand="+">
        <total_alignment_score>0.983</total_alignment_score>
        <cumulative_length_of_scored_exons>583</cumulative_length_of_scored_exons>
        <coverage percentage="1.003" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0236E02.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E441720" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="65575" e_stop="65689"/>
          <exon e_start="66850" e_stop="67021"/>
          <exon e_start="67765" e_stop="68060"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAAACCCTTTTCTGTAAATCCAAAAAAAATTCCGATGGCGATGAGGCGTGTAGCTTCTACAGCAGCTCGTGCTATTGCTTCACCTTCATCCTTAGTTTTTACCAGAGAACTTCAGGTAACTAGCCATTTCTCCTCAATAGCCACTTTTTGTTGCTTTTGTTTTATATGACCTAGTTTTCGCCCTTTGATGAATTATCGGAAACCGGCACGGATCAACTCCGATTTTTCGAGAATCAAGTGAGTTGGAGATTGGAACAGAGGAAACTAAAGGAATTTAACCGTGTAAAGGAAAAAATTAAACACACTGTATTTGGTGCTCTACCCCTCGTCTCTTCTTTTTGGCTTTCCCCGTACTCTACACACCAAATGAAATGGCTCGGATATGAAAGGACTAATAACTTTTCAGTTTTCATTACTGCGTCCTTTTTTAAGCTTTCAGTTTTAATTTGCGTGAATATACCTAATTTTTATTAGGGTAGAGTTATATGTTTCAAATTAAATTGCTACCAAGTTAAATTTAAGAATGTTACATAAATTTAGAGACGGCAAGTTTATATACCAAGAAGGGTACTCCTTCATCCACAGAGAAACGGTGTCCAGTTCGAGTATGGGCGTGAATCTAGATATAGTTAATTCCAATGCAGATATCAGACATCGAGTGAGGAAAAAAAAGATTTTATTAATTTGTTATTTTTAGGTTGCTTTTCCTTTAACTGAAAATCTAACCCGGCAGGACCACAACAGTTCTTTTCCGATCATTACTAATGATACTTGATTTTCACGTGCGATTTCTGATATTTTTATACGGAGTAGGTGAAGAGTGAAATGTTTCACGGGTCTCAAGGACAATGGCAGCAGTGCTTCATTTTTTTTTGCATCTTCACGTGCTATATTATTACTTTGTTTATACTAGTTCGACTTGGAAAATCTTTTCATATTCAGTTGTCTGGGGAATAAATAAGATATTTCTTATTTTTTGATTAAAAAAAGAAGAAGATATTTCTTATTTAAAGAAGTGACAAATTGTACTAACTCATTTACCATGCCTAATATATTATATGTGACAATGATGATTTTTTTTAACTATTAATTGTTAGTTTGGACAAAAATGATCAAAGCAAGTATATTGAATAATGCTTATTTCTTGCCAACTGGTGCATCTACGAGATTATAGGAGTTGGATTATAATTTTAGCACATCCAGCATGCTTATATGACCTTAAAATATTCATGTATATTCTGTCCACTCACCTTTTATTTCTTCATTATTTTACAGGCTTCCCCTGGCCCCAAAAAGATTGTGGGTGTTTTCTACAAAGCAAATGAATATGCTGAAATGAACCCCAACTTTTTGGGCTGTGCAGAAAATGCCTTGGGGATACGTGAATGGTTAGAGTCTAAAGGTCATCAGTACATAGTCACTCCTGACAAAGAAGGACCAGATTGTGGTTAGTTCCTGCTAATCTATAATCTCTCATGTTCTATCCATTATCCCACTGAAGCCTATGCATTTCTAAAGATAATTTCTTTACCCTTCATGCTTGTACAACTAAACACATCTTAAAAGGAGTATTTTTGCATTTAAAACATGCATATATGTGCTGAAGTTTTTTAAAAATATATGGCTCACGTGAGGAGAATATAACGGTCATAGCAGGAACATTTATTTAGATAAAGAGCAAAGCAAAGTAAACAATATTTGCTTTGTTAGTGTTGGTCCTTTGCTGCTAGTGAATTATGATCAGGACATTGTGAGGTAGTTTCTTGCAGGAGGGAAAAAAAGAGTGTATTTTACCTTGATATACAGGTGTGCATTTGCAAAACGTCTATACTTCAGGACTCAGGTGTAAGTTGTACTAGTTTGATAAGACTATGGCTAAATTTTGTAATTTAAACAAGGATTTATCAAAGTCGCAGGGGCTTGTTTAGTTGTTGAGTAGAGTGCACACATGGATGCTTTAGTGATTTTCTGATGGATGACATGCTTAGTGTAAATCCTTGCTTATTAGTATCTTTTATCATGAGAAAGAATGGTGCCCTAGTCTGACACACAAACTACTCTGTGTCTTAGTTTTTCACTGTTGAATCCTTTACTATGCTCTATGCAAAGAAATTTCTCCTGAGCTAAAGTTTTTGAGTGTGTCCATCTATAATAGCTTCTTTTTTTTTTCCCATGACTTTCTCTCTGCAGAGCTTGAGAAACACATTCCTGATCTCCATGTGTTGATTTCGACCCCTTTTCATCCTGCCTATGTCACGGCTGAAAGGATCAAGAAGGCAAAAAATCTACAACTTCTGCTGACAGCTGGAATTGGATCAGATCATGTTGATCTGAAAGCTGCTGCTGCTGCTGGATTGACAGTAGCAGAGGTCACTGGAAGCAATACTGTCTCAGTTGCGGAAGATGAACTGATGCGAATCTTAATTCTTGTCCGAAATTTCTTACCTGGACATCATCAGGTTATCAATGGGGAGTGGAATGTTGCT</genome_strand>
        <mrna_strand>AAAACCCTTTGCTGTAAATCCAA--AAAATTCCGATGGCGATGAGTCGTGTAGCTTCTACAGCAGCTCGTGCTATTACTTCACCTTCATCCTTAGTTTTTACCAGAGAACTTCAG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCTTCCCCTGGCCCCAAAAAGATTGTGGGTGTTTTCTACAAAGCAAATGAATATGCTGAAATGAACCCCAACTTTTTGGGCTGTGCAGAAAATGCCTTGGGGATACGTGAATGGTTAGAATCTAAAGGTCATCAGTACATAGTCACTCCTGACAAAGAAGGACCGGATTGTG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGCTTGAGAAACACATTCCTGATCTCCATGTGTTGATTTCGACCCCTTTTCATCCTGCCTATGTCACGGCTGAAAGGATCAAGAAGGCAAAAAATCTACAACTACTGCTGACAGCTGGAATTGGATCAGATCATGTTGATCTGAAAGCTGCTGCTGCTGCTGGATTGACAGTAGCAGAGGTCACTGGAAGCAATACTGTCTCAGTTGCGGAAGATGAACTGATGCGAATCTTAATTCTTGTCCGAAATTTCTTGCCTGGACATCATCAGGTTATCAATGGGGAGTGGAATGTTGCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0236E02-u8qcS/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E240827" ref_strand="+" ref_description="SGN-E240827 [cLED-24-N3]">
      <seq>aaacccttttctgtaaatccaaaaaaaattccgatggcgatgaggcgtgtagcttctacagcagctcgtgctattgcttcaccttcatccttagtttttaccagagaacttcaggcttcccctggccccaaaaagattgtgggtgttttctacaaagcaaatgaatatgctgaaatgaaccccaactttttgggctgtgcagaaaatgccttggggatacgtgaatggttagagtctaaaggtcatcagtacatagtcactcctgacaaagaaggaccagattgtgagcttgagaaacacattcctga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0236E02-u8qcS/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0236E02.1" temp_strand="+" temp_description="C02HBa0236E02.1  AC215430.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0236E02 sequenced_by:kribb upload_account_name:korea">
        <position start="65276" stop="68086"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="65576" g_stop="65689" g_length="114"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="114" r_length="114" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="65690" i_stop="66849" i_length="1160">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="66850" g_stop="67021" g_length="172"/>
          <reference_exon_boundary r_type="cDNA" r_start="115" r_stop="286" r_length="172" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="67022" i_stop="67764" i_length="743">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="0.987" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="67765" g_stop="67786" g_length="22"/>
          <reference_exon_boundary r_type="cDNA" r_start="287" r_stop="308" r_length="22" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0236E02.1" gen_strand="+" ref_id="SGN-E240827" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>308</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0236E02.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E240827" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="65576" e_stop="65689"/>
          <exon e_start="66850" e_stop="67021"/>
          <exon e_start="67765" e_stop="67786"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAACCCTTTTCTGTAAATCCAAAAAAAATTCCGATGGCGATGAGGCGTGTAGCTTCTACAGCAGCTCGTGCTATTGCTTCACCTTCATCCTTAGTTTTTACCAGAGAACTTCAGGTAACTAGCCATTTCTCCTCAATAGCCACTTTTTGTTGCTTTTGTTTTATATGACCTAGTTTTCGCCCTTTGATGAATTATCGGAAACCGGCACGGATCAACTCCGATTTTTCGAGAATCAAGTGAGTTGGAGATTGGAACAGAGGAAACTAAAGGAATTTAACCGTGTAAAGGAAAAAATTAAACACACTGTATTTGGTGCTCTACCCCTCGTCTCTTCTTTTTGGCTTTCCCCGTACTCTACACACCAAATGAAATGGCTCGGATATGAAAGGACTAATAACTTTTCAGTTTTCATTACTGCGTCCTTTTTTAAGCTTTCAGTTTTAATTTGCGTGAATATACCTAATTTTTATTAGGGTAGAGTTATATGTTTCAAATTAAATTGCTACCAAGTTAAATTTAAGAATGTTACATAAATTTAGAGACGGCAAGTTTATATACCAAGAAGGGTACTCCTTCATCCACAGAGAAACGGTGTCCAGTTCGAGTATGGGCGTGAATCTAGATATAGTTAATTCCAATGCAGATATCAGACATCGAGTGAGGAAAAAAAAGATTTTATTAATTTGTTATTTTTAGGTTGCTTTTCCTTTAACTGAAAATCTAACCCGGCAGGACCACAACAGTTCTTTTCCGATCATTACTAATGATACTTGATTTTCACGTGCGATTTCTGATATTTTTATACGGAGTAGGTGAAGAGTGAAATGTTTCACGGGTCTCAAGGACAATGGCAGCAGTGCTTCATTTTTTTTTGCATCTTCACGTGCTATATTATTACTTTGTTTATACTAGTTCGACTTGGAAAATCTTTTCATATTCAGTTGTCTGGGGAATAAATAAGATATTTCTTATTTTTTGATTAAAAAAAGAAGAAGATATTTCTTATTTAAAGAAGTGACAAATTGTACTAACTCATTTACCATGCCTAATATATTATATGTGACAATGATGATTTTTTTTAACTATTAATTGTTAGTTTGGACAAAAATGATCAAAGCAAGTATATTGAATAATGCTTATTTCTTGCCAACTGGTGCATCTACGAGATTATAGGAGTTGGATTATAATTTTAGCACATCCAGCATGCTTATATGACCTTAAAATATTCATGTATATTCTGTCCACTCACCTTTTATTTCTTCATTATTTTACAGGCTTCCCCTGGCCCCAAAAAGATTGTGGGTGTTTTCTACAAAGCAAATGAATATGCTGAAATGAACCCCAACTTTTTGGGCTGTGCAGAAAATGCCTTGGGGATACGTGAATGGTTAGAGTCTAAAGGTCATCAGTACATAGTCACTCCTGACAAAGAAGGACCAGATTGTGGTTAGTTCCTGCTAATCTATAATCTCTCATGTTCTATCCATTATCCCACTGAAGCCTATGCATTTCTAAAGATAATTTCTTTACCCTTCATGCTTGTACAACTAAACACATCTTAAAAGGAGTATTTTTGCATTTAAAACATGCATATATGTGCTGAAGTTTTTTAAAAATATATGGCTCACGTGAGGAGAATATAACGGTCATAGCAGGAACATTTATTTAGATAAAGAGCAAAGCAAAGTAAACAATATTTGCTTTGTTAGTGTTGGTCCTTTGCTGCTAGTGAATTATGATCAGGACATTGTGAGGTAGTTTCTTGCAGGAGGGAAAAAAAGAGTGTATTTTACCTTGATATACAGGTGTGCATTTGCAAAACGTCTATACTTCAGGACTCAGGTGTAAGTTGTACTAGTTTGATAAGACTATGGCTAAATTTTGTAATTTAAACAAGGATTTATCAAAGTCGCAGGGGCTTGTTTAGTTGTTGAGTAGAGTGCACACATGGATGCTTTAGTGATTTTCTGATGGATGACATGCTTAGTGTAAATCCTTGCTTATTAGTATCTTTTATCATGAGAAAGAATGGTGCCCTAGTCTGACACACAAACTACTCTGTGTCTTAGTTTTTCACTGTTGAATCCTTTACTATGCTCTATGCAAAGAAATTTCTCCTGAGCTAAAGTTTTTGAGTGTGTCCATCTATAATAGCTTCTTTTTTTTTTCCCATGACTTTCTCTCTGCAGAGCTTGAGAAACACATTCCTGA</genome_strand>
        <mrna_strand>AAACCCTTTTCTGTAAATCCAAAAAAAATTCCGATGGCGATGAGGCGTGTAGCTTCTACAGCAGCTCGTGCTATTGCTTCACCTTCATCCTTAGTTTTTACCAGAGAACTTCAG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCTTCCCCTGGCCCCAAAAAGATTGTGGGTGTTTTCTACAAAGCAAATGAATATGCTGAAATGAACCCCAACTTTTTGGGCTGTGCAGAAAATGCCTTGGGGATACGTGAATGGTTAGAGTCTAAAGGTCATCAGTACATAGTCACTCCTGACAAAGAAGGACCAGATTGTG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGCTTGAGAAACACATTCCTGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0236E02-u8qcS/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E479625" ref_strand="+" ref_description="SGN-E479625 [cSTD-10-N19]">
      <seq>ccctttgctgtaaatccaaaaattccgatggcgctgagtcgtgtagcttctacagcagctcgtgctattacttcaccttcatccttagtttttaccagagaacttcaggcttcccctggccccaaaagattgtgggtgttttctacaaagcaaatgaatatgctgaaatgaacccccaacctttttgggctgtgcagaaaatgccttggggataccgtgaatgggttagaatctaaaggtcatcagtacattagtcactcctgacaaagaagggacccagattgtgagcttgagaaacacattcctgatctccatgtgttgatttcgaccccttttcatcctgcctatgtcacggctgaaagggatcaagaaggcaaaaaatctacaactactgctgacagctggaattggatcagaatcatgttgatctgaaagctgctgctgctgctggattgacagtggcagaagtcactggaagcaatactgtctcagttgcggaagatgaactgatgcgaatcttaattcttgtccgaaatttcttgcctggacatcatcaggttatcaatggggagtgggaatgttgctgcaattgcgcacagagcttatgatttggaaggcaagactgttggaaactgttggtgcanggacgtattggcagacttttactccaacgattgaagccatttaactgtaatctac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0236E02-u8qcS/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0236E02.1" temp_strand="+" temp_description="C02HBa0236E02.1  AC215430.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0236E02 sequenced_by:kribb upload_account_name:korea">
        <position start="65299" stop="68472"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="65579" g_stop="65689" g_length="111"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="108" r_length="108" r_score="0.937"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="65690" i_stop="66849" i_length="1160">
            <donor d_prob="1.000" d_score="0.98"/>
            <acceptor a_prob="1.000" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="66850" g_stop="67021" g_length="172"/>
          <reference_exon_boundary r_type="cDNA" r_start="109" r_stop="286" r_length="178" r_score="0.907"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="67022" i_stop="67764" i_length="743">
            <donor d_prob="0.994" d_score="0.87"/>
            <acceptor a_prob="0.987" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="67765" g_stop="68172" g_length="408"/>
          <reference_exon_boundary r_type="cDNA" r_start="287" r_stop="699" r_length="413" r_score="0.963"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0236E02.1" gen_strand="+" ref_id="SGN-E479625" ref_strand="+">
        <total_alignment_score>0.945</total_alignment_score>
        <cumulative_length_of_scored_exons>691</cumulative_length_of_scored_exons>
        <coverage percentage="0.989" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0236E02.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E479625" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="65579" e_stop="65689"/>
          <exon e_start="66850" e_stop="67021"/>
          <exon e_start="67765" e_stop="68172"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCCTTTTCTGTAAATCCAAAAAAAATTCCGATGGCGATGAGGCGTGTAGCTTCTACAGCAGCTCGTGCTATTGCTTCACCTTCATCCTTAGTTTTTACCAGAGAACTTCAGGTAACTAGCCATTTCTCCTCAATAGCCACTTTTTGTTGCTTTTGTTTTATATGACCTAGTTTTCGCCCTTTGATGAATTATCGGAAACCGGCACGGATCAACTCCGATTTTTCGAGAATCAAGTGAGTTGGAGATTGGAACAGAGGAAACTAAAGGAATTTAACCGTGTAAAGGAAAAAATTAAACACACTGTATTTGGTGCTCTACCCCTCGTCTCTTCTTTTTGGCTTTCCCCGTACTCTACACACCAAATGAAATGGCTCGGATATGAAAGGACTAATAACTTTTCAGTTTTCATTACTGCGTCCTTTTTTAAGCTTTCAGTTTTAATTTGCGTGAATATACCTAATTTTTATTAGGGTAGAGTTATATGTTTCAAATTAAATTGCTACCAAGTTAAATTTAAGAATGTTACATAAATTTAGAGACGGCAAGTTTATATACCAAGAAGGGTACTCCTTCATCCACAGAGAAACGGTGTCCAGTTCGAGTATGGGCGTGAATCTAGATATAGTTAATTCCAATGCAGATATCAGACATCGAGTGAGGAAAAAAAAGATTTTATTAATTTGTTATTTTTAGGTTGCTTTTCCTTTAACTGAAAATCTAACCCGGCAGGACCACAACAGTTCTTTTCCGATCATTACTAATGATACTTGATTTTCACGTGCGATTTCTGATATTTTTATACGGAGTAGGTGAAGAGTGAAATGTTTCACGGGTCTCAAGGACAATGGCAGCAGTGCTTCATTTTTTTTTGCATCTTCACGTGCTATATTATTACTTTGTTTATACTAGTTCGACTTGGAAAATCTTTTCATATTCAGTTGTCTGGGGAATAAATAAGATATTTCTTATTTTTTGATTAAAAAAAGAAGAAGATATTTCTTATTTAAAGAAGTGACAAATTGTACTAACTCATTTACCATGCCTAATATATTATATGTGACAATGATGATTTTTTTTAACTATTAATTGTTAGTTTGGACAAAAATGATCAAAGCAAGTATATTGAATAATGCTTATTTCTTGCCAACTGGTGCATCTACGAGATTATAGGAGTTGGATTATAATTTTAGCACATCCAGCATGCTTATATGACCTTAAAATATTCATGTATATTCTGTCCACTCACCTTTTATTTCTTCATTATTTTACAGGCTTCCCCTGGCCCCAAAAAGATTGTGGGTGTTTTCTACAAAGCAAATGAATATGCTGAAATGAA-CCCCAA-CTTTTTGGGCTGTGCAGAAAATGCCTTGGGGATA-CGTGAAT-GGTTAGAGTCTAAAGGTCATCAGTACA-TAGTCACTCCTGACAAAGAA-GGA-CCAGATTGTGGTTAGTTCCTGCTAATCTATAATCTCTCATGTTCTATCCATTATCCCACTGAAGCCTATGCATTTCTAAAGATAATTTCTTTACCCTTCATGCTTGTACAACTAAACACATCTTAAAAGGAGTATTTTTGCATTTAAAACATGCATATATGTGCTGAAGTTTTTTAAAAATATATGGCTCACGTGAGGAGAATATAACGGTCATAGCAGGAACATTTATTTAGATAAAGAGCAAAGCAAAGTAAACAATATTTGCTTTGTTAGTGTTGGTCCTTTGCTGCTAGTGAATTATGATCAGGACATTGTGAGGTAGTTTCTTGCAGGAGGGAAAAAAAGAGTGTATTTTACCTTGATATACAGGTGTGCATTTGCAAAACGTCTATACTTCAGGACTCAGGTGTAAGTTGTACTAGTTTGATAAGACTATGGCTAAATTTTGTAATTTAAACAAGGATTTATCAAAGTCGCAGGGGCTTGTTTAGTTGTTGAGTAGAGTGCACACATGGATGCTTTAGTGATTTTCTGATGGATGACATGCTTAGTGTAAATCCTTGCTTATTAGTATCTTTTATCATGAGAAAGAATGGTGCCCTAGTCTGACACACAAACTACTCTGTGTCTTAGTTTTTCACTGTTGAATCCTTTACTATGCTCTATGCAAAGAAATTTCTCCTGAGCTAAAGTTTTTGAGTGTGTCCATCTATAATAGCTTCTTTTTTTTTTCCCATGACTTTCTCTCTGCAGAGCTTGAGAAACACATTCCTGATCTCCATGTGTTGATTTCGACCCCTTTTCATCCTGCCTATGTCACGGCTGAAA-GGATCAAGAAGGCAAAAAATCTACAACTTCTGCTGACAGCTGGAATTGGATCAG-ATCATGTTGATCTGAAAGCTGCTGCTGCTGCTGGATTGACAGTAGCAGAGGTCACTGGAAGCAATACTGTCTCAGTTGCGGAAGATGAACTGATGCGAATCTTAATTCTTGTCCGAAATTTCTTACCTGGACATCATCAGGTTATCAATGGGGAGT-GGAATGTTGCTGCAATTGCGCACAGAGCTTATGATTTGGAAGGCAAGACTGTTGG-AACTGTTGGTGCA-GGACGTATTGGCAGACTTTTACTCCAGCGATTGAAGCCATTTAACTGTAATCTAC</genome_strand>
        <mrna_strand>CCCTTTGCTGTAAATCCAAA---AATTCCGATGGCGCTGAGTCGTGTAGCTTCTACAGCAGCTCGTGCTATTACTTCACCTTCATCCTTAGTTTTTACCAGAGAACTTCAG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCTTCCCCTGGCCCC-AAAAGATTGTGGGTGTTTTCTACAAAGCAAATGAATATGCTGAAATGAACCCCCAACCTTTTTGGGCTGTGCAGAAAATGCCTTGGGGATACCGTGAATGGGTTAGAATCTAAAGGTCATCAGTACATTAGTCACTCCTGACAAAGAAGGGACCCAGATTGTG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGCTTGAGAAACACATTCCTGATCTCCATGTGTTGATTTCGACCCCTTTTCATCCTGCCTATGTCACGGCTGAAAGGGATCAAGAAGGCAAAAAATCTACAACTACTGCTGACAGCTGGAATTGGATCAGAATCATGTTGATCTGAAAGCTGCTGCTGCTGCTGGATTGACAGTGGCAGAAGTCACTGGAAGCAATACTGTCTCAGTTGCGGAAGATGAACTGATGCGAATCTTAATTCTTGTCCGAAATTTCTTGCCTGGACATCATCAGGTTATCAATGGGGAGTGGGAATGTTGCTGCAATTGCGCACAGAGCTTATGATTTGGAAGGCAAGACTGTTGGAAACTGTTGGTGCANGGACGTATTGGCAGACTTTTACTCCAACGATTGAAGCCATTTAACTGTAATCTAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0236E02-u8qcS/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E448800" ref_strand="+" ref_description="SGN-E448800 [cSTS-4-B19]">
      <seq>ctttgctgtaaatccaaaaaattccgatggcgatgagtcgtgtagcttctacagcagctcgtgctattacttcaccttcatccttagtttttaccagagaacttcaggcttcccctggccccaaaaagattgtgggtgttttctacaaagcaaatgaatatgctgaaatgaaccccaactttttgggctgtgcagaaaatgccttggggatacgtgaatggttagaatctaaaggtcatcagtacatagtcactcctgacaaagaaggaccagattgtgagcttgagaaacacattcctgatctccatgtgttgatttcgaccccttttcatcctgcctatgtcacggctgaaaggatcaagaaggcaaaaaaatctacaactactgctgacagctggaattggatcagatcatgttgatctgaaagctgctgctgctgctggattgacagtagcagaggtcactggaagcaatactgtctcagttgcggaagatgaactgatgcgaatcttaattcttgtccgaaatttcttgcctggacatcatcaggttatcaatggggagtggaatgttgctgcaattgcgcacagagcttatgatttggaaggcaagactgttggaactgttggtgcaggacgtattggcagacttttactccaacgattgaagccatttaactgtaatctactttaccatgac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0236E02-u8qcS/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0236E02.1" temp_strand="+" temp_description="C02HBa0236E02.1  AC215430.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0236E02 sequenced_by:kribb upload_account_name:korea">
        <position start="65281" stop="68483"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="65581" g_stop="65689" g_length="109"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="107" r_length="107" r_score="0.954"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="65690" i_stop="66849" i_length="1160">
            <donor d_prob="1.000" d_score="0.98"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="66850" g_stop="67021" g_length="172"/>
          <reference_exon_boundary r_type="cDNA" r_start="108" r_stop="279" r_length="172" r_score="0.994"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="67022" i_stop="67764" i_length="743">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="0.987" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="67765" g_stop="68183" g_length="419"/>
          <reference_exon_boundary r_type="cDNA" r_start="280" r_stop="699" r_length="420" r_score="0.988"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0236E02.1" gen_strand="+" ref_id="SGN-E448800" ref_strand="+">
        <total_alignment_score>0.984</total_alignment_score>
        <cumulative_length_of_scored_exons>700</cumulative_length_of_scored_exons>
        <coverage percentage="1.001" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0236E02.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E448800" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="65581" e_stop="65689"/>
          <exon e_start="66850" e_stop="67021"/>
          <exon e_start="67765" e_stop="68183"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTTTTCTGTAAATCCAAAAAAAATTCCGATGGCGATGAGGCGTGTAGCTTCTACAGCAGCTCGTGCTATTGCTTCACCTTCATCCTTAGTTTTTACCAGAGAACTTCAGGTAACTAGCCATTTCTCCTCAATAGCCACTTTTTGTTGCTTTTGTTTTATATGACCTAGTTTTCGCCCTTTGATGAATTATCGGAAACCGGCACGGATCAACTCCGATTTTTCGAGAATCAAGTGAGTTGGAGATTGGAACAGAGGAAACTAAAGGAATTTAACCGTGTAAAGGAAAAAATTAAACACACTGTATTTGGTGCTCTACCCCTCGTCTCTTCTTTTTGGCTTTCCCCGTACTCTACACACCAAATGAAATGGCTCGGATATGAAAGGACTAATAACTTTTCAGTTTTCATTACTGCGTCCTTTTTTAAGCTTTCAGTTTTAATTTGCGTGAATATACCTAATTTTTATTAGGGTAGAGTTATATGTTTCAAATTAAATTGCTACCAAGTTAAATTTAAGAATGTTACATAAATTTAGAGACGGCAAGTTTATATACCAAGAAGGGTACTCCTTCATCCACAGAGAAACGGTGTCCAGTTCGAGTATGGGCGTGAATCTAGATATAGTTAATTCCAATGCAGATATCAGACATCGAGTGAGGAAAAAAAAGATTTTATTAATTTGTTATTTTTAGGTTGCTTTTCCTTTAACTGAAAATCTAACCCGGCAGGACCACAACAGTTCTTTTCCGATCATTACTAATGATACTTGATTTTCACGTGCGATTTCTGATATTTTTATACGGAGTAGGTGAAGAGTGAAATGTTTCACGGGTCTCAAGGACAATGGCAGCAGTGCTTCATTTTTTTTTGCATCTTCACGTGCTATATTATTACTTTGTTTATACTAGTTCGACTTGGAAAATCTTTTCATATTCAGTTGTCTGGGGAATAAATAAGATATTTCTTATTTTTTGATTAAAAAAAGAAGAAGATATTTCTTATTTAAAGAAGTGACAAATTGTACTAACTCATTTACCATGCCTAATATATTATATGTGACAATGATGATTTTTTTTAACTATTAATTGTTAGTTTGGACAAAAATGATCAAAGCAAGTATATTGAATAATGCTTATTTCTTGCCAACTGGTGCATCTACGAGATTATAGGAGTTGGATTATAATTTTAGCACATCCAGCATGCTTATATGACCTTAAAATATTCATGTATATTCTGTCCACTCACCTTTTATTTCTTCATTATTTTACAGGCTTCCCCTGGCCCCAAAAAGATTGTGGGTGTTTTCTACAAAGCAAATGAATATGCTGAAATGAACCCCAACTTTTTGGGCTGTGCAGAAAATGCCTTGGGGATACGTGAATGGTTAGAGTCTAAAGGTCATCAGTACATAGTCACTCCTGACAAAGAAGGACCAGATTGTGGTTAGTTCCTGCTAATCTATAATCTCTCATGTTCTATCCATTATCCCACTGAAGCCTATGCATTTCTAAAGATAATTTCTTTACCCTTCATGCTTGTACAACTAAACACATCTTAAAAGGAGTATTTTTGCATTTAAAACATGCATATATGTGCTGAAGTTTTTTAAAAATATATGGCTCACGTGAGGAGAATATAACGGTCATAGCAGGAACATTTATTTAGATAAAGAGCAAAGCAAAGTAAACAATATTTGCTTTGTTAGTGTTGGTCCTTTGCTGCTAGTGAATTATGATCAGGACATTGTGAGGTAGTTTCTTGCAGGAGGGAAAAAAAGAGTGTATTTTACCTTGATATACAGGTGTGCATTTGCAAAACGTCTATACTTCAGGACTCAGGTGTAAGTTGTACTAGTTTGATAAGACTATGGCTAAATTTTGTAATTTAAACAAGGATTTATCAAAGTCGCAGGGGCTTGTTTAGTTGTTGAGTAGAGTGCACACATGGATGCTTTAGTGATTTTCTGATGGATGACATGCTTAGTGTAAATCCTTGCTTATTAGTATCTTTTATCATGAGAAAGAATGGTGCCCTAGTCTGACACACAAACTACTCTGTGTCTTAGTTTTTCACTGTTGAATCCTTTACTATGCTCTATGCAAAGAAATTTCTCCTGAGCTAAAGTTTTTGAGTGTGTCCATCTATAATAGCTTCTTTTTTTTTTCCCATGACTTTCTCTCTGCAGAGCTTGAGAAACACATTCCTGATCTCCATGTGTTGATTTCGACCCCTTTTCATCCTGCCTATGTCACGGCTGAAAGGATCAAGAAGGC-AAAAAATCTACAACTTCTGCTGACAGCTGGAATTGGATCAGATCATGTTGATCTGAAAGCTGCTGCTGCTGCTGGATTGACAGTAGCAGAGGTCACTGGAAGCAATACTGTCTCAGTTGCGGAAGATGAACTGATGCGAATCTTAATTCTTGTCCGAAATTTCTTACCTGGACATCATCAGGTTATCAATGGGGAGTGGAATGTTGCTGCAATTGCGCACAGAGCTTATGATTTGGAAGGCAAGACTGTTGGAACTGTTGGTGCAGGACGTATTGGCAGACTTTTACTCCAGCGATTGAAGCCATTTAACTGTAATCTACTTTACCATGAC</genome_strand>
        <mrna_strand>CTTTGCTGTAAATCC--AAAAAATTCCGATGGCGATGAGTCGTGTAGCTTCTACAGCAGCTCGTGCTATTACTTCACCTTCATCCTTAGTTTTTACCAGAGAACTTCAG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCTTCCCCTGGCCCCAAAAAGATTGTGGGTGTTTTCTACAAAGCAAATGAATATGCTGAAATGAACCCCAACTTTTTGGGCTGTGCAGAAAATGCCTTGGGGATACGTGAATGGTTAGAATCTAAAGGTCATCAGTACATAGTCACTCCTGACAAAGAAGGACCAGATTGTG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGCTTGAGAAACACATTCCTGATCTCCATGTGTTGATTTCGACCCCTTTTCATCCTGCCTATGTCACGGCTGAAAGGATCAAGAAGGCAAAAAAATCTACAACTACTGCTGACAGCTGGAATTGGATCAGATCATGTTGATCTGAAAGCTGCTGCTGCTGCTGGATTGACAGTAGCAGAGGTCACTGGAAGCAATACTGTCTCAGTTGCGGAAGATGAACTGATGCGAATCTTAATTCTTGTCCGAAATTTCTTGCCTGGACATCATCAGGTTATCAATGGGGAGTGGAATGTTGCTGCAATTGCGCACAGAGCTTATGATTTGGAAGGCAAGACTGTTGGAACTGTTGGTGCAGGACGTATTGGCAGACTTTTACTCCAACGATTGAAGCCATTTAACTGTAATCTACTTTACCATGAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0236E02-u8qcS/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E472137" ref_strand="+" ref_description="SGN-E472137 [cSTB-27-L15]">
      <seq>ctttgctgtaaatccaaaaaattccgatggcgatgagtcgtgtagcttctacagcagctcgtgctattacttcaccttcatccttagtttttaccagagaacttcaggcttcccctggccccaaaaagattgtgggtgttttctacaaagcaaatgaatatgctgaaatgaaccccaactttttgggctgtgcagaaaatgccttggggatacgtgaatggttagaatctaaaggtcatcagtacatagtcactcctgacaaagaaggaccagattgtgagcttgagaaacacattcctgatctccatgtgttgatttcgaccccttttcatcctgcctatgtcacggctgaaaggatcaagaaggcaaaaaatctacaactactgctgacagctggaattggatcagatcatgttgatctgaaagctgctgctgctgctggattgacagtagcagaggtcactggaagcaatactgtct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0236E02-u8qcS/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0236E02.1" temp_strand="+" temp_description="C02HBa0236E02.1  AC215430.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0236E02 sequenced_by:kribb upload_account_name:korea">
        <position start="65281" stop="68265"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="65581" g_stop="65689" g_length="109"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="107" r_length="107" r_score="0.954"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="65690" i_stop="66849" i_length="1160">
            <donor d_prob="1.000" d_score="0.98"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="66850" g_stop="67021" g_length="172"/>
          <reference_exon_boundary r_type="cDNA" r_start="108" r_stop="279" r_length="172" r_score="0.994"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="67022" i_stop="67764" i_length="743">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="0.987" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="67765" g_stop="67965" g_length="201"/>
          <reference_exon_boundary r_type="cDNA" r_start="280" r_stop="480" r_length="201" r_score="0.995"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0236E02.1" gen_strand="+" ref_id="SGN-E472137" ref_strand="+">
        <total_alignment_score>0.985</total_alignment_score>
        <cumulative_length_of_scored_exons>482</cumulative_length_of_scored_exons>
        <coverage percentage="1.004" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0236E02.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E472137" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="65581" e_stop="65689"/>
          <exon e_start="66850" e_stop="67021"/>
          <exon e_start="67765" e_stop="67965"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTTTTCTGTAAATCCAAAAAAAATTCCGATGGCGATGAGGCGTGTAGCTTCTACAGCAGCTCGTGCTATTGCTTCACCTTCATCCTTAGTTTTTACCAGAGAACTTCAGGTAACTAGCCATTTCTCCTCAATAGCCACTTTTTGTTGCTTTTGTTTTATATGACCTAGTTTTCGCCCTTTGATGAATTATCGGAAACCGGCACGGATCAACTCCGATTTTTCGAGAATCAAGTGAGTTGGAGATTGGAACAGAGGAAACTAAAGGAATTTAACCGTGTAAAGGAAAAAATTAAACACACTGTATTTGGTGCTCTACCCCTCGTCTCTTCTTTTTGGCTTTCCCCGTACTCTACACACCAAATGAAATGGCTCGGATATGAAAGGACTAATAACTTTTCAGTTTTCATTACTGCGTCCTTTTTTAAGCTTTCAGTTTTAATTTGCGTGAATATACCTAATTTTTATTAGGGTAGAGTTATATGTTTCAAATTAAATTGCTACCAAGTTAAATTTAAGAATGTTACATAAATTTAGAGACGGCAAGTTTATATACCAAGAAGGGTACTCCTTCATCCACAGAGAAACGGTGTCCAGTTCGAGTATGGGCGTGAATCTAGATATAGTTAATTCCAATGCAGATATCAGACATCGAGTGAGGAAAAAAAAGATTTTATTAATTTGTTATTTTTAGGTTGCTTTTCCTTTAACTGAAAATCTAACCCGGCAGGACCACAACAGTTCTTTTCCGATCATTACTAATGATACTTGATTTTCACGTGCGATTTCTGATATTTTTATACGGAGTAGGTGAAGAGTGAAATGTTTCACGGGTCTCAAGGACAATGGCAGCAGTGCTTCATTTTTTTTTGCATCTTCACGTGCTATATTATTACTTTGTTTATACTAGTTCGACTTGGAAAATCTTTTCATATTCAGTTGTCTGGGGAATAAATAAGATATTTCTTATTTTTTGATTAAAAAAAGAAGAAGATATTTCTTATTTAAAGAAGTGACAAATTGTACTAACTCATTTACCATGCCTAATATATTATATGTGACAATGATGATTTTTTTTAACTATTAATTGTTAGTTTGGACAAAAATGATCAAAGCAAGTATATTGAATAATGCTTATTTCTTGCCAACTGGTGCATCTACGAGATTATAGGAGTTGGATTATAATTTTAGCACATCCAGCATGCTTATATGACCTTAAAATATTCATGTATATTCTGTCCACTCACCTTTTATTTCTTCATTATTTTACAGGCTTCCCCTGGCCCCAAAAAGATTGTGGGTGTTTTCTACAAAGCAAATGAATATGCTGAAATGAACCCCAACTTTTTGGGCTGTGCAGAAAATGCCTTGGGGATACGTGAATGGTTAGAGTCTAAAGGTCATCAGTACATAGTCACTCCTGACAAAGAAGGACCAGATTGTGGTTAGTTCCTGCTAATCTATAATCTCTCATGTTCTATCCATTATCCCACTGAAGCCTATGCATTTCTAAAGATAATTTCTTTACCCTTCATGCTTGTACAACTAAACACATCTTAAAAGGAGTATTTTTGCATTTAAAACATGCATATATGTGCTGAAGTTTTTTAAAAATATATGGCTCACGTGAGGAGAATATAACGGTCATAGCAGGAACATTTATTTAGATAAAGAGCAAAGCAAAGTAAACAATATTTGCTTTGTTAGTGTTGGTCCTTTGCTGCTAGTGAATTATGATCAGGACATTGTGAGGTAGTTTCTTGCAGGAGGGAAAAAAAGAGTGTATTTTACCTTGATATACAGGTGTGCATTTGCAAAACGTCTATACTTCAGGACTCAGGTGTAAGTTGTACTAGTTTGATAAGACTATGGCTAAATTTTGTAATTTAAACAAGGATTTATCAAAGTCGCAGGGGCTTGTTTAGTTGTTGAGTAGAGTGCACACATGGATGCTTTAGTGATTTTCTGATGGATGACATGCTTAGTGTAAATCCTTGCTTATTAGTATCTTTTATCATGAGAAAGAATGGTGCCCTAGTCTGACACACAAACTACTCTGTGTCTTAGTTTTTCACTGTTGAATCCTTTACTATGCTCTATGCAAAGAAATTTCTCCTGAGCTAAAGTTTTTGAGTGTGTCCATCTATAATAGCTTCTTTTTTTTTTCCCATGACTTTCTCTCTGCAGAGCTTGAGAAACACATTCCTGATCTCCATGTGTTGATTTCGACCCCTTTTCATCCTGCCTATGTCACGGCTGAAAGGATCAAGAAGGCAAAAAATCTACAACTTCTGCTGACAGCTGGAATTGGATCAGATCATGTTGATCTGAAAGCTGCTGCTGCTGCTGGATTGACAGTAGCAGAGGTCACTGGAAGCAATACTGTCT</genome_strand>
        <mrna_strand>CTTTGCTGTAAATCC--AAAAAATTCCGATGGCGATGAGTCGTGTAGCTTCTACAGCAGCTCGTGCTATTACTTCACCTTCATCCTTAGTTTTTACCAGAGAACTTCAG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCTTCCCCTGGCCCCAAAAAGATTGTGGGTGTTTTCTACAAAGCAAATGAATATGCTGAAATGAACCCCAACTTTTTGGGCTGTGCAGAAAATGCCTTGGGGATACGTGAATGGTTAGAATCTAAAGGTCATCAGTACATAGTCACTCCTGACAAAGAAGGACCAGATTGTG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGCTTGAGAAACACATTCCTGATCTCCATGTGTTGATTTCGACCCCTTTTCATCCTGCCTATGTCACGGCTGAAAGGATCAAGAAGGCAAAAAATCTACAACTACTGCTGACAGCTGGAATTGGATCAGATCATGTTGATCTGAAAGCTGCTGCTGCTGCTGGATTGACAGTAGCAGAGGTCACTGGAAGCAATACTGTCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0236E02-u8qcS/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E337024" ref_strand="+" ref_description="SGN-E337024 [cTOE-20-P7]">
      <seq>ttttctgtaaatccaaaaaaaattccgatggcgatgaggcgtgtagcttctacagcagctcgtgctattgcttcaccttcatccttagtttttaccagagaacttcaggcttcccctggccccaaaaagattgtgggtgttttctacaaagcaaatgaatatgctgaaatgaaccccaactttttgggctgtgcagaaaatgccttggggatacgtgaatggttagagtctaaaggtcatcagtacatagtcactcctgacaaagaaggaccagattgtgagcttgagaaacacattcctgatctccatgtgttgatttcgaccccttttcatcctgcctatgtcacggctgaaaggatcaagaaggcaaaaaatctacaacttctgctgacagctggaattggatcagatcatgttgatctgaaagctgctgctgctgctggattgacagtagcagaggtcactggaagcaatactgtctcagttgcggaagatgaactgatgcgaatcttaattcttgtccgaaatttcttacctggacatcatcaggttatcaatggggagtggaatgttgctgcaattgcgcacagagcttatga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0236E02-u8qcS/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0236E02.1" temp_strand="+" temp_description="C02HBa0236E02.1  AC215430.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0236E02 sequenced_by:kribb upload_account_name:korea">
        <position start="65282" stop="68383"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="65582" g_stop="65689" g_length="108"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="108" r_length="108" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="65690" i_stop="66849" i_length="1160">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="66850" g_stop="67021" g_length="172"/>
          <reference_exon_boundary r_type="cDNA" r_start="109" r_stop="280" r_length="172" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="67022" i_stop="67764" i_length="743">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="0.987" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="67765" g_stop="68083" g_length="319"/>
          <reference_exon_boundary r_type="cDNA" r_start="281" r_stop="599" r_length="319" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0236E02.1" gen_strand="+" ref_id="SGN-E337024" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>599</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0236E02.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E337024" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="65582" e_stop="65689"/>
          <exon e_start="66850" e_stop="67021"/>
          <exon e_start="67765" e_stop="68083"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTTCTGTAAATCCAAAAAAAATTCCGATGGCGATGAGGCGTGTAGCTTCTACAGCAGCTCGTGCTATTGCTTCACCTTCATCCTTAGTTTTTACCAGAGAACTTCAGGTAACTAGCCATTTCTCCTCAATAGCCACTTTTTGTTGCTTTTGTTTTATATGACCTAGTTTTCGCCCTTTGATGAATTATCGGAAACCGGCACGGATCAACTCCGATTTTTCGAGAATCAAGTGAGTTGGAGATTGGAACAGAGGAAACTAAAGGAATTTAACCGTGTAAAGGAAAAAATTAAACACACTGTATTTGGTGCTCTACCCCTCGTCTCTTCTTTTTGGCTTTCCCCGTACTCTACACACCAAATGAAATGGCTCGGATATGAAAGGACTAATAACTTTTCAGTTTTCATTACTGCGTCCTTTTTTAAGCTTTCAGTTTTAATTTGCGTGAATATACCTAATTTTTATTAGGGTAGAGTTATATGTTTCAAATTAAATTGCTACCAAGTTAAATTTAAGAATGTTACATAAATTTAGAGACGGCAAGTTTATATACCAAGAAGGGTACTCCTTCATCCACAGAGAAACGGTGTCCAGTTCGAGTATGGGCGTGAATCTAGATATAGTTAATTCCAATGCAGATATCAGACATCGAGTGAGGAAAAAAAAGATTTTATTAATTTGTTATTTTTAGGTTGCTTTTCCTTTAACTGAAAATCTAACCCGGCAGGACCACAACAGTTCTTTTCCGATCATTACTAATGATACTTGATTTTCACGTGCGATTTCTGATATTTTTATACGGAGTAGGTGAAGAGTGAAATGTTTCACGGGTCTCAAGGACAATGGCAGCAGTGCTTCATTTTTTTTTGCATCTTCACGTGCTATATTATTACTTTGTTTATACTAGTTCGACTTGGAAAATCTTTTCATATTCAGTTGTCTGGGGAATAAATAAGATATTTCTTATTTTTTGATTAAAAAAAGAAGAAGATATTTCTTATTTAAAGAAGTGACAAATTGTACTAACTCATTTACCATGCCTAATATATTATATGTGACAATGATGATTTTTTTTAACTATTAATTGTTAGTTTGGACAAAAATGATCAAAGCAAGTATATTGAATAATGCTTATTTCTTGCCAACTGGTGCATCTACGAGATTATAGGAGTTGGATTATAATTTTAGCACATCCAGCATGCTTATATGACCTTAAAATATTCATGTATATTCTGTCCACTCACCTTTTATTTCTTCATTATTTTACAGGCTTCCCCTGGCCCCAAAAAGATTGTGGGTGTTTTCTACAAAGCAAATGAATATGCTGAAATGAACCCCAACTTTTTGGGCTGTGCAGAAAATGCCTTGGGGATACGTGAATGGTTAGAGTCTAAAGGTCATCAGTACATAGTCACTCCTGACAAAGAAGGACCAGATTGTGGTTAGTTCCTGCTAATCTATAATCTCTCATGTTCTATCCATTATCCCACTGAAGCCTATGCATTTCTAAAGATAATTTCTTTACCCTTCATGCTTGTACAACTAAACACATCTTAAAAGGAGTATTTTTGCATTTAAAACATGCATATATGTGCTGAAGTTTTTTAAAAATATATGGCTCACGTGAGGAGAATATAACGGTCATAGCAGGAACATTTATTTAGATAAAGAGCAAAGCAAAGTAAACAATATTTGCTTTGTTAGTGTTGGTCCTTTGCTGCTAGTGAATTATGATCAGGACATTGTGAGGTAGTTTCTTGCAGGAGGGAAAAAAAGAGTGTATTTTACCTTGATATACAGGTGTGCATTTGCAAAACGTCTATACTTCAGGACTCAGGTGTAAGTTGTACTAGTTTGATAAGACTATGGCTAAATTTTGTAATTTAAACAAGGATTTATCAAAGTCGCAGGGGCTTGTTTAGTTGTTGAGTAGAGTGCACACATGGATGCTTTAGTGATTTTCTGATGGATGACATGCTTAGTGTAAATCCTTGCTTATTAGTATCTTTTATCATGAGAAAGAATGGTGCCCTAGTCTGACACACAAACTACTCTGTGTCTTAGTTTTTCACTGTTGAATCCTTTACTATGCTCTATGCAAAGAAATTTCTCCTGAGCTAAAGTTTTTGAGTGTGTCCATCTATAATAGCTTCTTTTTTTTTTCCCATGACTTTCTCTCTGCAGAGCTTGAGAAACACATTCCTGATCTCCATGTGTTGATTTCGACCCCTTTTCATCCTGCCTATGTCACGGCTGAAAGGATCAAGAAGGCAAAAAATCTACAACTTCTGCTGACAGCTGGAATTGGATCAGATCATGTTGATCTGAAAGCTGCTGCTGCTGCTGGATTGACAGTAGCAGAGGTCACTGGAAGCAATACTGTCTCAGTTGCGGAAGATGAACTGATGCGAATCTTAATTCTTGTCCGAAATTTCTTACCTGGACATCATCAGGTTATCAATGGGGAGTGGAATGTTGCTGCAATTGCGCACAGAGCTTATGA</genome_strand>
        <mrna_strand>TTTTCTGTAAATCCAAAAAAAATTCCGATGGCGATGAGGCGTGTAGCTTCTACAGCAGCTCGTGCTATTGCTTCACCTTCATCCTTAGTTTTTACCAGAGAACTTCAG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCTTCCCCTGGCCCCAAAAAGATTGTGGGTGTTTTCTACAAAGCAAATGAATATGCTGAAATGAACCCCAACTTTTTGGGCTGTGCAGAAAATGCCTTGGGGATACGTGAATGGTTAGAGTCTAAAGGTCATCAGTACATAGTCACTCCTGACAAAGAAGGACCAGATTGTG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGCTTGAGAAACACATTCCTGATCTCCATGTGTTGATTTCGACCCCTTTTCATCCTGCCTATGTCACGGCTGAAAGGATCAAGAAGGCAAAAAATCTACAACTTCTGCTGACAGCTGGAATTGGATCAGATCATGTTGATCTGAAAGCTGCTGCTGCTGCTGGATTGACAGTAGCAGAGGTCACTGGAAGCAATACTGTCTCAGTTGCGGAAGATGAACTGATGCGAATCTTAATTCTTGTCCGAAATTTCTTACCTGGACATCATCAGGTTATCAATGGGGAGTGGAATGTTGCTGCAATTGCGCACAGAGCTTATGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0236E02-u8qcS/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E267969" ref_strand="+" ref_description="SGN-E267969 [cLEI-15-E21]">
      <seq>ttttctgtaaatccaaaaaaaattccgatggcgatgaggcgtgtagcttctacagcagctcgtgctattgcttcaccttcatccttagtttttaccagagaacttcaggcttcccctggccccaaaaagattgtgggtgttttctacaaagcatatgaatatgctgaaatgaaccccaactttttgggctgtgcagaaaatgcctaggggatacgtgaatggttagagtctaaaggtcatccctccataatcgcttctgactgataaggaccagattgtgagctcgagaaacacattcctgatctccatgtgttgatttcgaccccttttcatcctgcctatgtcacggctgaaaggatcaagagggcaaccaatctacaacttctgctgacagctggaattggatcagatcatgttgatctgaaagctgctgctgctgctggattgacagtagcagaggtcactggaagcaatactgtctcagttgcggaagatgaactgatgccaatctt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0236E02-u8qcS/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0236E02.1" temp_strand="+" temp_description="C02HBa0236E02.1  AC215430.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0236E02 sequenced_by:kribb upload_account_name:korea">
        <position start="65282" stop="68296"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="65582" g_stop="65689" g_length="108"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="108" r_length="108" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="65690" i_stop="66849" i_length="1160">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="66850" g_stop="67021" g_length="172"/>
          <reference_exon_boundary r_type="cDNA" r_start="109" r_stop="280" r_length="172" r_score="0.936"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="67022" i_stop="67764" i_length="743">
            <donor d_prob="0.994" d_score="0.82"/>
            <acceptor a_prob="0.987" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="67765" g_stop="67996" g_length="232"/>
          <reference_exon_boundary r_type="cDNA" r_start="281" r_stop="512" r_length="232" r_score="0.978"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0236E02.1" gen_strand="+" ref_id="SGN-E267969" ref_strand="+">
        <total_alignment_score>0.969</total_alignment_score>
        <cumulative_length_of_scored_exons>512</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0236E02.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E267969" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="65582" e_stop="65689"/>
          <exon e_start="66850" e_stop="67021"/>
          <exon e_start="67765" e_stop="67996"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTTCTGTAAATCCAAAAAAAATTCCGATGGCGATGAGGCGTGTAGCTTCTACAGCAGCTCGTGCTATTGCTTCACCTTCATCCTTAGTTTTTACCAGAGAACTTCAGGTAACTAGCCATTTCTCCTCAATAGCCACTTTTTGTTGCTTTTGTTTTATATGACCTAGTTTTCGCCCTTTGATGAATTATCGGAAACCGGCACGGATCAACTCCGATTTTTCGAGAATCAAGTGAGTTGGAGATTGGAACAGAGGAAACTAAAGGAATTTAACCGTGTAAAGGAAAAAATTAAACACACTGTATTTGGTGCTCTACCCCTCGTCTCTTCTTTTTGGCTTTCCCCGTACTCTACACACCAAATGAAATGGCTCGGATATGAAAGGACTAATAACTTTTCAGTTTTCATTACTGCGTCCTTTTTTAAGCTTTCAGTTTTAATTTGCGTGAATATACCTAATTTTTATTAGGGTAGAGTTATATGTTTCAAATTAAATTGCTACCAAGTTAAATTTAAGAATGTTACATAAATTTAGAGACGGCAAGTTTATATACCAAGAAGGGTACTCCTTCATCCACAGAGAAACGGTGTCCAGTTCGAGTATGGGCGTGAATCTAGATATAGTTAATTCCAATGCAGATATCAGACATCGAGTGAGGAAAAAAAAGATTTTATTAATTTGTTATTTTTAGGTTGCTTTTCCTTTAACTGAAAATCTAACCCGGCAGGACCACAACAGTTCTTTTCCGATCATTACTAATGATACTTGATTTTCACGTGCGATTTCTGATATTTTTATACGGAGTAGGTGAAGAGTGAAATGTTTCACGGGTCTCAAGGACAATGGCAGCAGTGCTTCATTTTTTTTTGCATCTTCACGTGCTATATTATTACTTTGTTTATACTAGTTCGACTTGGAAAATCTTTTCATATTCAGTTGTCTGGGGAATAAATAAGATATTTCTTATTTTTTGATTAAAAAAAGAAGAAGATATTTCTTATTTAAAGAAGTGACAAATTGTACTAACTCATTTACCATGCCTAATATATTATATGTGACAATGATGATTTTTTTTAACTATTAATTGTTAGTTTGGACAAAAATGATCAAAGCAAGTATATTGAATAATGCTTATTTCTTGCCAACTGGTGCATCTACGAGATTATAGGAGTTGGATTATAATTTTAGCACATCCAGCATGCTTATATGACCTTAAAATATTCATGTATATTCTGTCCACTCACCTTTTATTTCTTCATTATTTTACAGGCTTCCCCTGGCCCCAAAAAGATTGTGGGTGTTTTCTACAAAGCAAATGAATATGCTGAAATGAACCCCAACTTTTTGGGCTGTGCAGAAAATGCCTTGGGGATACGTGAATGGTTAGAGTCTAAAGGTCATCAGTACATAGTCACTCCTGACAAAGAAGGACCAGATTGTGGTTAGTTCCTGCTAATCTATAATCTCTCATGTTCTATCCATTATCCCACTGAAGCCTATGCATTTCTAAAGATAATTTCTTTACCCTTCATGCTTGTACAACTAAACACATCTTAAAAGGAGTATTTTTGCATTTAAAACATGCATATATGTGCTGAAGTTTTTTAAAAATATATGGCTCACGTGAGGAGAATATAACGGTCATAGCAGGAACATTTATTTAGATAAAGAGCAAAGCAAAGTAAACAATATTTGCTTTGTTAGTGTTGGTCCTTTGCTGCTAGTGAATTATGATCAGGACATTGTGAGGTAGTTTCTTGCAGGAGGGAAAAAAAGAGTGTATTTTACCTTGATATACAGGTGTGCATTTGCAAAACGTCTATACTTCAGGACTCAGGTGTAAGTTGTACTAGTTTGATAAGACTATGGCTAAATTTTGTAATTTAAACAAGGATTTATCAAAGTCGCAGGGGCTTGTTTAGTTGTTGAGTAGAGTGCACACATGGATGCTTTAGTGATTTTCTGATGGATGACATGCTTAGTGTAAATCCTTGCTTATTAGTATCTTTTATCATGAGAAAGAATGGTGCCCTAGTCTGACACACAAACTACTCTGTGTCTTAGTTTTTCACTGTTGAATCCTTTACTATGCTCTATGCAAAGAAATTTCTCCTGAGCTAAAGTTTTTGAGTGTGTCCATCTATAATAGCTTCTTTTTTTTTTCCCATGACTTTCTCTCTGCAGAGCTTGAGAAACACATTCCTGATCTCCATGTGTTGATTTCGACCCCTTTTCATCCTGCCTATGTCACGGCTGAAAGGATCAAGAAGGCAAAAAATCTACAACTTCTGCTGACAGCTGGAATTGGATCAGATCATGTTGATCTGAAAGCTGCTGCTGCTGCTGGATTGACAGTAGCAGAGGTCACTGGAAGCAATACTGTCTCAGTTGCGGAAGATGAACTGATGCGAATCTT</genome_strand>
        <mrna_strand>TTTTCTGTAAATCCAAAAAAAATTCCGATGGCGATGAGGCGTGTAGCTTCTACAGCAGCTCGTGCTATTGCTTCACCTTCATCCTTAGTTTTTACCAGAGAACTTCAG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCTTCCCCTGGCCCCAAAAAGATTGTGGGTGTTTTCTACAAAGCATATGAATATGCTGAAATGAACCCCAACTTTTTGGGCTGTGCAGAAAATGCCTAGGGGATACGTGAATGGTTAGAGTCTAAAGGTCATCCCTCCATAATCGCTTCTGACTGATAAGGACCAGATTGTG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGCTCGAGAAACACATTCCTGATCTCCATGTGTTGATTTCGACCCCTTTTCATCCTGCCTATGTCACGGCTGAAAGGATCAAGAGGGCAACCAATCTACAACTTCTGCTGACAGCTGGAATTGGATCAGATCATGTTGATCTGAAAGCTGCTGCTGCTGCTGGATTGACAGTAGCAGAGGTCACTGGAAGCAATACTGTCTCAGTTGCGGAAGATGAACTGATGCCAATCTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0236E02-u8qcS/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E453834" ref_strand="+" ref_description="SGN-E453834 [cSTS-21-E18]">
      <seq>taaatccaaaaaattccgatggcgctgaagtcgtgtagcttctaccgcagctcgtgctattacttcaccttcatccttagtttttaccagagaacttcaggcttcccctggccccaaaaagcttgtgggtgttttctacaaagcaaatgaatatgcctgaaatgaaccccaactttttgggctgtgcagaaaatgccttggggataccgtgaatggttagaatctaaaggtcatcagtacatagtcactcctgacaaagaaggaccagattgtgagcttgagaaacacattcctgatctccatgtgttgatttcgaccccttttcatcctgcctatgtcacggctgaaaggatcaagaaggcaaaaaatctacaactactgctgacagctggaattggatcagatcatgttgatctgaaagctgctgctgctgctggattgacagtagcagaggtcactggaagcaatactgtctcagttgcggaagatgaactgatgcgaatcttaattcttgtccgaaatttcttgcctggacatcatcaggttataatgggggagtgggaatgttgctgcaattgcgcacagagcttatgatttggaaggcaagactgttggaactgttggtgcanngacgtattggcagacttttactccaacgattgaagccatttaactgtaatctact</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0236E02-u8qcS/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0236E02.1" temp_strand="+" temp_description="C02HBa0236E02.1  AC215430.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0236E02 sequenced_by:kribb upload_account_name:korea">
        <position start="65298" stop="68473"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="65589" g_stop="65689" g_length="101"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="100" r_length="100" r_score="0.921"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="65690" i_stop="66849" i_length="1160">
            <donor d_prob="1.000" d_score="0.98"/>
            <acceptor a_prob="1.000" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="66850" g_stop="67021" g_length="172"/>
          <reference_exon_boundary r_type="cDNA" r_start="101" r_stop="274" r_length="174" r_score="0.965"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="67022" i_stop="67764" i_length="743">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="0.987" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="67765" g_stop="68173" g_length="409"/>
          <reference_exon_boundary r_type="cDNA" r_start="275" r_stop="685" r_length="411" r_score="0.973"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0236E02.1" gen_strand="+" ref_id="SGN-E453834" ref_strand="+">
        <total_alignment_score>0.963</total_alignment_score>
        <cumulative_length_of_scored_exons>682</cumulative_length_of_scored_exons>
        <coverage percentage="0.996" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0236E02.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E453834" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="65589" e_stop="65689"/>
          <exon e_start="66850" e_stop="67021"/>
          <exon e_start="67765" e_stop="68173"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TAAATCCAAAAAAAATTCCGATGGCGATGA-GGCGTGTAGCTTCTACAGCAGCTCGTGCTATTGCTTCACCTTCATCCTTAGTTTTTACCAGAGAACTTCAGGTAACTAGCCATTTCTCCTCAATAGCCACTTTTTGTTGCTTTTGTTTTATATGACCTAGTTTTCGCCCTTTGATGAATTATCGGAAACCGGCACGGATCAACTCCGATTTTTCGAGAATCAAGTGAGTTGGAGATTGGAACAGAGGAAACTAAAGGAATTTAACCGTGTAAAGGAAAAAATTAAACACACTGTATTTGGTGCTCTACCCCTCGTCTCTTCTTTTTGGCTTTCCCCGTACTCTACACACCAAATGAAATGGCTCGGATATGAAAGGACTAATAACTTTTCAGTTTTCATTACTGCGTCCTTTTTTAAGCTTTCAGTTTTAATTTGCGTGAATATACCTAATTTTTATTAGGGTAGAGTTATATGTTTCAAATTAAATTGCTACCAAGTTAAATTTAAGAATGTTACATAAATTTAGAGACGGCAAGTTTATATACCAAGAAGGGTACTCCTTCATCCACAGAGAAACGGTGTCCAGTTCGAGTATGGGCGTGAATCTAGATATAGTTAATTCCAATGCAGATATCAGACATCGAGTGAGGAAAAAAAAGATTTTATTAATTTGTTATTTTTAGGTTGCTTTTCCTTTAACTGAAAATCTAACCCGGCAGGACCACAACAGTTCTTTTCCGATCATTACTAATGATACTTGATTTTCACGTGCGATTTCTGATATTTTTATACGGAGTAGGTGAAGAGTGAAATGTTTCACGGGTCTCAAGGACAATGGCAGCAGTGCTTCATTTTTTTTTGCATCTTCACGTGCTATATTATTACTTTGTTTATACTAGTTCGACTTGGAAAATCTTTTCATATTCAGTTGTCTGGGGAATAAATAAGATATTTCTTATTTTTTGATTAAAAAAAGAAGAAGATATTTCTTATTTAAAGAAGTGACAAATTGTACTAACTCATTTACCATGCCTAATATATTATATGTGACAATGATGATTTTTTTTAACTATTAATTGTTAGTTTGGACAAAAATGATCAAAGCAAGTATATTGAATAATGCTTATTTCTTGCCAACTGGTGCATCTACGAGATTATAGGAGTTGGATTATAATTTTAGCACATCCAGCATGCTTATATGACCTTAAAATATTCATGTATATTCTGTCCACTCACCTTTTATTTCTTCATTATTTTACAGGCTTCCCCTGGCCCCAAAAAGATTGTGGGTGTTTTCTACAAAGCAAATGAATATG-CTGAAATGAACCCCAACTTTTTGGGCTGTGCAGAAAATGCCTTGGGGATA-CGTGAATGGTTAGAGTCTAAAGGTCATCAGTACATAGTCACTCCTGACAAAGAAGGACCAGATTGTGGTTAGTTCCTGCTAATCTATAATCTCTCATGTTCTATCCATTATCCCACTGAAGCCTATGCATTTCTAAAGATAATTTCTTTACCCTTCATGCTTGTACAACTAAACACATCTTAAAAGGAGTATTTTTGCATTTAAAACATGCATATATGTGCTGAAGTTTTTTAAAAATATATGGCTCACGTGAGGAGAATATAACGGTCATAGCAGGAACATTTATTTAGATAAAGAGCAAAGCAAAGTAAACAATATTTGCTTTGTTAGTGTTGGTCCTTTGCTGCTAGTGAATTATGATCAGGACATTGTGAGGTAGTTTCTTGCAGGAGGGAAAAAAAGAGTGTATTTTACCTTGATATACAGGTGTGCATTTGCAAAACGTCTATACTTCAGGACTCAGGTGTAAGTTGTACTAGTTTGATAAGACTATGGCTAAATTTTGTAATTTAAACAAGGATTTATCAAAGTCGCAGGGGCTTGTTTAGTTGTTGAGTAGAGTGCACACATGGATGCTTTAGTGATTTTCTGATGGATGACATGCTTAGTGTAAATCCTTGCTTATTAGTATCTTTTATCATGAGAAAGAATGGTGCCCTAGTCTGACACACAAACTACTCTGTGTCTTAGTTTTTCACTGTTGAATCCTTTACTATGCTCTATGCAAAGAAATTTCTCCTGAGCTAAAGTTTTTGAGTGTGTCCATCTATAATAGCTTCTTTTTTTTTTCCCATGACTTTCTCTCTGCAGAGCTTGAGAAACACATTCCTGATCTCCATGTGTTGATTTCGACCCCTTTTCATCCTGCCTATGTCACGGCTGAAAGGATCAAGAAGGCAAAAAATCTACAACTTCTGCTGACAGCTGGAATTGGATCAGATCATGTTGATCTGAAAGCTGCTGCTGCTGCTGGATTGACAGTAGCAGAGGTCACTGGAAGCAATACTGTCTCAGTTGCGGAAGATGAACTGATGCGAATCTTAATTCTTGTCCGAAATTTCTTACCTGGACATCATCAGGTTATCAATGGGGAGT-GGAATGTTGCTGCAATTGCGCACAGAGCTTATGATTTGGAAGGCAAGACTGTTGGAACTGTTGGTGCA-GGACGTATTGGCAGACTTTTACTCCAGCGATTGAAGCCATTTAACTGTAATCTACT</genome_strand>
        <mrna_strand>TAAATCC-A-AAAAATTCCGATGGCGCTGAAGTCGTGTAGCTTCTACCGCAGCTCGTGCTATTACTTCACCTTCATCCTTAGTTTTTACCAGAGAACTTCAG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCTTCCCCTGGCCCCAAAAAGCTTGTGGGTGTTTTCTACAAAGCAAATGAATATGCCTGAAATGAACCCCAACTTTTTGGGCTGTGCAGAAAATGCCTTGGGGATACCGTGAATGGTTAGAATCTAAAGGTCATCAGTACATAGTCACTCCTGACAAAGAAGGACCAGATTGTG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGCTTGAGAAACACATTCCTGATCTCCATGTGTTGATTTCGACCCCTTTTCATCCTGCCTATGTCACGGCTGAAAGGATCAAGAAGGCAAAAAATCTACAACTACTGCTGACAGCTGGAATTGGATCAGATCATGTTGATCTGAAAGCTGCTGCTGCTGCTGGATTGACAGTAGCAGAGGTCACTGGAAGCAATACTGTCTCAGTTGCGGAAGATGAACTGATGCGAATCTTAATTCTTGTCCGAAATTTCTTGCCTGGACATCATCAGGTTATAATGGGGGAGTGGGAATGTTGCTGCAATTGCGCACAGAGCTTATGATTTGGAAGGCAAGACTGTTGGAACTGTTGGTGCANNGACGTATTGGCAGACTTTTACTCCAACGATTGAAGCCATTTAACTGTAATCTACT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0236E02-u8qcS/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E433752" ref_strand="+" ref_description="SGN-E433752 [STM-58-P8]">
      <seq>aaatccaaaaaattccgatggcgatgagtcgtgtagcttctacagcagctcgtgctattacttcaccttcatccttagtttttaccagagaacttcaggcttcccctggccccaaaaagattgtgggtgttttctacaaagcaaatgaatatgctgaaatgaaccccaactttttgggctgtgcagaaaatgccttggggatacgtgaatggttagaatctaaaggtcatcagtacatagtcactcctgacaaagaaggaccagattgtgagcttgagaaacacattcctgatctccatgtgttgatttcgaccccttttcatcctgcctatgtcacggctgaaaggatcaagaaggcaaaaaatctacaactactgctgacagctggaattg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0236E02-u8qcS/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0236E02.1" temp_strand="+" temp_description="C02HBa0236E02.1  AC215430.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0236E02 sequenced_by:kribb upload_account_name:korea">
        <position start="65298" stop="68187"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="65590" g_stop="65689" g_length="100"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="98" r_length="98" r_score="0.960"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="65690" i_stop="66849" i_length="1160">
            <donor d_prob="1.000" d_score="0.98"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="66850" g_stop="67021" g_length="172"/>
          <reference_exon_boundary r_type="cDNA" r_start="99" r_stop="270" r_length="172" r_score="0.994"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="67022" i_stop="67764" i_length="743">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="0.987" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="67765" g_stop="67887" g_length="123"/>
          <reference_exon_boundary r_type="cDNA" r_start="271" r_stop="393" r_length="123" r_score="0.992"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0236E02.1" gen_strand="+" ref_id="SGN-E433752" ref_strand="+">
        <total_alignment_score>0.985</total_alignment_score>
        <cumulative_length_of_scored_exons>395</cumulative_length_of_scored_exons>
        <coverage percentage="1.005" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0236E02.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E433752" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="65590" e_stop="65689"/>
          <exon e_start="66850" e_stop="67021"/>
          <exon e_start="67765" e_stop="67887"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAATCCAAAAAAAATTCCGATGGCGATGAGGCGTGTAGCTTCTACAGCAGCTCGTGCTATTGCTTCACCTTCATCCTTAGTTTTTACCAGAGAACTTCAGGTAACTAGCCATTTCTCCTCAATAGCCACTTTTTGTTGCTTTTGTTTTATATGACCTAGTTTTCGCCCTTTGATGAATTATCGGAAACCGGCACGGATCAACTCCGATTTTTCGAGAATCAAGTGAGTTGGAGATTGGAACAGAGGAAACTAAAGGAATTTAACCGTGTAAAGGAAAAAATTAAACACACTGTATTTGGTGCTCTACCCCTCGTCTCTTCTTTTTGGCTTTCCCCGTACTCTACACACCAAATGAAATGGCTCGGATATGAAAGGACTAATAACTTTTCAGTTTTCATTACTGCGTCCTTTTTTAAGCTTTCAGTTTTAATTTGCGTGAATATACCTAATTTTTATTAGGGTAGAGTTATATGTTTCAAATTAAATTGCTACCAAGTTAAATTTAAGAATGTTACATAAATTTAGAGACGGCAAGTTTATATACCAAGAAGGGTACTCCTTCATCCACAGAGAAACGGTGTCCAGTTCGAGTATGGGCGTGAATCTAGATATAGTTAATTCCAATGCAGATATCAGACATCGAGTGAGGAAAAAAAAGATTTTATTAATTTGTTATTTTTAGGTTGCTTTTCCTTTAACTGAAAATCTAACCCGGCAGGACCACAACAGTTCTTTTCCGATCATTACTAATGATACTTGATTTTCACGTGCGATTTCTGATATTTTTATACGGAGTAGGTGAAGAGTGAAATGTTTCACGGGTCTCAAGGACAATGGCAGCAGTGCTTCATTTTTTTTTGCATCTTCACGTGCTATATTATTACTTTGTTTATACTAGTTCGACTTGGAAAATCTTTTCATATTCAGTTGTCTGGGGAATAAATAAGATATTTCTTATTTTTTGATTAAAAAAAGAAGAAGATATTTCTTATTTAAAGAAGTGACAAATTGTACTAACTCATTTACCATGCCTAATATATTATATGTGACAATGATGATTTTTTTTAACTATTAATTGTTAGTTTGGACAAAAATGATCAAAGCAAGTATATTGAATAATGCTTATTTCTTGCCAACTGGTGCATCTACGAGATTATAGGAGTTGGATTATAATTTTAGCACATCCAGCATGCTTATATGACCTTAAAATATTCATGTATATTCTGTCCACTCACCTTTTATTTCTTCATTATTTTACAGGCTTCCCCTGGCCCCAAAAAGATTGTGGGTGTTTTCTACAAAGCAAATGAATATGCTGAAATGAACCCCAACTTTTTGGGCTGTGCAGAAAATGCCTTGGGGATACGTGAATGGTTAGAGTCTAAAGGTCATCAGTACATAGTCACTCCTGACAAAGAAGGACCAGATTGTGGTTAGTTCCTGCTAATCTATAATCTCTCATGTTCTATCCATTATCCCACTGAAGCCTATGCATTTCTAAAGATAATTTCTTTACCCTTCATGCTTGTACAACTAAACACATCTTAAAAGGAGTATTTTTGCATTTAAAACATGCATATATGTGCTGAAGTTTTTTAAAAATATATGGCTCACGTGAGGAGAATATAACGGTCATAGCAGGAACATTTATTTAGATAAAGAGCAAAGCAAAGTAAACAATATTTGCTTTGTTAGTGTTGGTCCTTTGCTGCTAGTGAATTATGATCAGGACATTGTGAGGTAGTTTCTTGCAGGAGGGAAAAAAAGAGTGTATTTTACCTTGATATACAGGTGTGCATTTGCAAAACGTCTATACTTCAGGACTCAGGTGTAAGTTGTACTAGTTTGATAAGACTATGGCTAAATTTTGTAATTTAAACAAGGATTTATCAAAGTCGCAGGGGCTTGTTTAGTTGTTGAGTAGAGTGCACACATGGATGCTTTAGTGATTTTCTGATGGATGACATGCTTAGTGTAAATCCTTGCTTATTAGTATCTTTTATCATGAGAAAGAATGGTGCCCTAGTCTGACACACAAACTACTCTGTGTCTTAGTTTTTCACTGTTGAATCCTTTACTATGCTCTATGCAAAGAAATTTCTCCTGAGCTAAAGTTTTTGAGTGTGTCCATCTATAATAGCTTCTTTTTTTTTTCCCATGACTTTCTCTCTGCAGAGCTTGAGAAACACATTCCTGATCTCCATGTGTTGATTTCGACCCCTTTTCATCCTGCCTATGTCACGGCTGAAAGGATCAAGAAGGCAAAAAATCTACAACTTCTGCTGACAGCTGGAATTG</genome_strand>
        <mrna_strand>AAATCC-AA-AAAATTCCGATGGCGATGAGTCGTGTAGCTTCTACAGCAGCTCGTGCTATTACTTCACCTTCATCCTTAGTTTTTACCAGAGAACTTCAG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCTTCCCCTGGCCCCAAAAAGATTGTGGGTGTTTTCTACAAAGCAAATGAATATGCTGAAATGAACCCCAACTTTTTGGGCTGTGCAGAAAATGCCTTGGGGATACGTGAATGGTTAGAATCTAAAGGTCATCAGTACATAGTCACTCCTGACAAAGAAGGACCAGATTGTG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGCTTGAGAAACACATTCCTGATCTCCATGTGTTGATTTCGACCCCTTTTCATCCTGCCTATGTCACGGCTGAAAGGATCAAGAAGGCAAAAAATCTACAACTACTGCTGACAGCTGGAATTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0236E02-u8qcS/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E325457" ref_strand="+" ref_description="SGN-E325457 [cTOC-1-P19]">
      <seq>tccaaaaaaaaattccgatggcgatgaggcgtgtagcttctacagcagctcgtgctattgcttcaccttcatccttagtttttaccagagaacttcaggcttcccctggccccaaaaagattgtgggtgttttctacaaagcaaatgaatatgctgaaatgaaccccaactttttgggctgtgcagaaaatgccttggggatacgtgaatggttagagtctaaaggtcatcagtacatagtcactcctgacaaagaaggaccagattgtgagcttgagaaacacattcctgatctccatgtgttgatttcgaccccttttcatcctgcctatgtcacggctgaaaggatcaagaaggcaaaaaatctacaacttctgctgacagctggaattggatcagatcatgttgatctgaaagctgctgctgctgctggattgacagtagcagaggtcactggaagcaatactgtctcagttgcggaagatgaactgatgcgaatcttaattcttgtccgaaatttcttacctggacatcatcaggttatcaatggggagtggaatgttgct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0236E02-u8qcS/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0236E02.1" temp_strand="+" temp_description="C02HBa0236E02.1  AC215430.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0236E02 sequenced_by:kribb upload_account_name:korea">
        <position start="65293" stop="68360"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="65593" g_stop="65689" g_length="97"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="98" r_length="98" r_score="0.979"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="65690" i_stop="66849" i_length="1160">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="66850" g_stop="67021" g_length="172"/>
          <reference_exon_boundary r_type="cDNA" r_start="99" r_stop="270" r_length="172" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="67022" i_stop="67764" i_length="743">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="0.987" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="67765" g_stop="68060" g_length="296"/>
          <reference_exon_boundary r_type="cDNA" r_start="271" r_stop="566" r_length="296" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0236E02.1" gen_strand="+" ref_id="SGN-E325457" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>565</cumulative_length_of_scored_exons>
        <coverage percentage="0.998" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0236E02.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E325457" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="65593" e_stop="65689"/>
          <exon e_start="66850" e_stop="67021"/>
          <exon e_start="67765" e_stop="68060"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCC-AAAAAAAATTCCGATGGCGATGAGGCGTGTAGCTTCTACAGCAGCTCGTGCTATTGCTTCACCTTCATCCTTAGTTTTTACCAGAGAACTTCAGGTAACTAGCCATTTCTCCTCAATAGCCACTTTTTGTTGCTTTTGTTTTATATGACCTAGTTTTCGCCCTTTGATGAATTATCGGAAACCGGCACGGATCAACTCCGATTTTTCGAGAATCAAGTGAGTTGGAGATTGGAACAGAGGAAACTAAAGGAATTTAACCGTGTAAAGGAAAAAATTAAACACACTGTATTTGGTGCTCTACCCCTCGTCTCTTCTTTTTGGCTTTCCCCGTACTCTACACACCAAATGAAATGGCTCGGATATGAAAGGACTAATAACTTTTCAGTTTTCATTACTGCGTCCTTTTTTAAGCTTTCAGTTTTAATTTGCGTGAATATACCTAATTTTTATTAGGGTAGAGTTATATGTTTCAAATTAAATTGCTACCAAGTTAAATTTAAGAATGTTACATAAATTTAGAGACGGCAAGTTTATATACCAAGAAGGGTACTCCTTCATCCACAGAGAAACGGTGTCCAGTTCGAGTATGGGCGTGAATCTAGATATAGTTAATTCCAATGCAGATATCAGACATCGAGTGAGGAAAAAAAAGATTTTATTAATTTGTTATTTTTAGGTTGCTTTTCCTTTAACTGAAAATCTAACCCGGCAGGACCACAACAGTTCTTTTCCGATCATTACTAATGATACTTGATTTTCACGTGCGATTTCTGATATTTTTATACGGAGTAGGTGAAGAGTGAAATGTTTCACGGGTCTCAAGGACAATGGCAGCAGTGCTTCATTTTTTTTTGCATCTTCACGTGCTATATTATTACTTTGTTTATACTAGTTCGACTTGGAAAATCTTTTCATATTCAGTTGTCTGGGGAATAAATAAGATATTTCTTATTTTTTGATTAAAAAAAGAAGAAGATATTTCTTATTTAAAGAAGTGACAAATTGTACTAACTCATTTACCATGCCTAATATATTATATGTGACAATGATGATTTTTTTTAACTATTAATTGTTAGTTTGGACAAAAATGATCAAAGCAAGTATATTGAATAATGCTTATTTCTTGCCAACTGGTGCATCTACGAGATTATAGGAGTTGGATTATAATTTTAGCACATCCAGCATGCTTATATGACCTTAAAATATTCATGTATATTCTGTCCACTCACCTTTTATTTCTTCATTATTTTACAGGCTTCCCCTGGCCCCAAAAAGATTGTGGGTGTTTTCTACAAAGCAAATGAATATGCTGAAATGAACCCCAACTTTTTGGGCTGTGCAGAAAATGCCTTGGGGATACGTGAATGGTTAGAGTCTAAAGGTCATCAGTACATAGTCACTCCTGACAAAGAAGGACCAGATTGTGGTTAGTTCCTGCTAATCTATAATCTCTCATGTTCTATCCATTATCCCACTGAAGCCTATGCATTTCTAAAGATAATTTCTTTACCCTTCATGCTTGTACAACTAAACACATCTTAAAAGGAGTATTTTTGCATTTAAAACATGCATATATGTGCTGAAGTTTTTTAAAAATATATGGCTCACGTGAGGAGAATATAACGGTCATAGCAGGAACATTTATTTAGATAAAGAGCAAAGCAAAGTAAACAATATTTGCTTTGTTAGTGTTGGTCCTTTGCTGCTAGTGAATTATGATCAGGACATTGTGAGGTAGTTTCTTGCAGGAGGGAAAAAAAGAGTGTATTTTACCTTGATATACAGGTGTGCATTTGCAAAACGTCTATACTTCAGGACTCAGGTGTAAGTTGTACTAGTTTGATAAGACTATGGCTAAATTTTGTAATTTAAACAAGGATTTATCAAAGTCGCAGGGGCTTGTTTAGTTGTTGAGTAGAGTGCACACATGGATGCTTTAGTGATTTTCTGATGGATGACATGCTTAGTGTAAATCCTTGCTTATTAGTATCTTTTATCATGAGAAAGAATGGTGCCCTAGTCTGACACACAAACTACTCTGTGTCTTAGTTTTTCACTGTTGAATCCTTTACTATGCTCTATGCAAAGAAATTTCTCCTGAGCTAAAGTTTTTGAGTGTGTCCATCTATAATAGCTTCTTTTTTTTTTCCCATGACTTTCTCTCTGCAGAGCTTGAGAAACACATTCCTGATCTCCATGTGTTGATTTCGACCCCTTTTCATCCTGCCTATGTCACGGCTGAAAGGATCAAGAAGGCAAAAAATCTACAACTTCTGCTGACAGCTGGAATTGGATCAGATCATGTTGATCTGAAAGCTGCTGCTGCTGCTGGATTGACAGTAGCAGAGGTCACTGGAAGCAATACTGTCTCAGTTGCGGAAGATGAACTGATGCGAATCTTAATTCTTGTCCGAAATTTCTTACCTGGACATCATCAGGTTATCAATGGGGAGTGGAATGTTGCT</genome_strand>
        <mrna_strand>TCCAAAAAAAAATTCCGATGGCGATGAGGCGTGTAGCTTCTACAGCAGCTCGTGCTATTGCTTCACCTTCATCCTTAGTTTTTACCAGAGAACTTCAG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCTTCCCCTGGCCCCAAAAAGATTGTGGGTGTTTTCTACAAAGCAAATGAATATGCTGAAATGAACCCCAACTTTTTGGGCTGTGCAGAAAATGCCTTGGGGATACGTGAATGGTTAGAGTCTAAAGGTCATCAGTACATAGTCACTCCTGACAAAGAAGGACCAGATTGTG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGCTTGAGAAACACATTCCTGATCTCCATGTGTTGATTTCGACCCCTTTTCATCCTGCCTATGTCACGGCTGAAAGGATCAAGAAGGCAAAAAATCTACAACTTCTGCTGACAGCTGGAATTGGATCAGATCATGTTGATCTGAAAGCTGCTGCTGCTGCTGGATTGACAGTAGCAGAGGTCACTGGAAGCAATACTGTCTCAGTTGCGGAAGATGAACTGATGCGAATCTTAATTCTTGTCCGAAATTTCTTACCTGGACATCATCAGGTTATCAATGGGGAGTGGAATGTTGCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0236E02-u8qcS/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E454310" ref_strand="+" ref_description="SGN-E454310 [cSTS-22-H22]">
      <seq>caaaaaattccgatggcgatgagtcgtgtagcttctacagcagctcgtgctattacttcaccttcatccttagtttttaccagagaacttcaggcttcccctggccccaaaaagattgtgggtgttttctacaaagcaaatgaatatgctgaaatgaaccccaactttttgggctgtgcagaaaatgccttggggatacgtgaatggttagaatctaaaggtcatcagtacatagtcactcctgacaaagaaggaccggattgtgagcttgagaaacacattcctgatctccatgtgttgatttcgaccccttttcatcctgcctatgtcacggctgaaaggatcaagaaggcaaaaaatctacaactactgctgacagctggaattgtatcagatcatgttgatctgaaagctgctgctgctgctggattgacagtagcagaggtcactggaagcaatactgtctcagttgcggaagatgaactgatgcgaatcttaattcttgtccgaaatttcttgcctggacatcatcaggttatcaatggggagtggaatgttngctgcattgcgcacagagcttatgatttggaaggcaagactgttggaactgttggttcaggacgtattggcagacttttactccaacgattgaagccatttaactgtaatctactttacatgaccgtcttaagatggattctgagc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0236E02-u8qcS/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0236E02.1" temp_strand="+" temp_description="C02HBa0236E02.1  AC215430.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0236E02 sequenced_by:kribb upload_account_name:korea">
        <position start="65298" stop="68505"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="65597" g_stop="65689" g_length="93"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="93" r_length="93" r_score="0.968"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="65690" i_stop="66849" i_length="1160">
            <donor d_prob="1.000" d_score="0.98"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="66850" g_stop="67021" g_length="172"/>
          <reference_exon_boundary r_type="cDNA" r_start="94" r_stop="265" r_length="172" r_score="0.988"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="67022" i_stop="67764" i_length="743">
            <donor d_prob="0.994" d_score="0.98"/>
            <acceptor a_prob="0.987" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="67765" g_stop="68205" g_length="441"/>
          <reference_exon_boundary r_type="cDNA" r_start="266" r_stop="705" r_length="440" r_score="0.980"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0236E02.1" gen_strand="+" ref_id="SGN-E454310" ref_strand="+">
        <total_alignment_score>0.980</total_alignment_score>
        <cumulative_length_of_scored_exons>706</cumulative_length_of_scored_exons>
        <coverage percentage="1.001" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0236E02.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E454310" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="65597" e_stop="65689"/>
          <exon e_start="66850" e_stop="67021"/>
          <exon e_start="67765" e_stop="68205"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAAAAATTCCGATGGCGATGAGGCGTGTAGCTTCTACAGCAGCTCGTGCTATTGCTTCACCTTCATCCTTAGTTTTTACCAGAGAACTTCAGGTAACTAGCCATTTCTCCTCAATAGCCACTTTTTGTTGCTTTTGTTTTATATGACCTAGTTTTCGCCCTTTGATGAATTATCGGAAACCGGCACGGATCAACTCCGATTTTTCGAGAATCAAGTGAGTTGGAGATTGGAACAGAGGAAACTAAAGGAATTTAACCGTGTAAAGGAAAAAATTAAACACACTGTATTTGGTGCTCTACCCCTCGTCTCTTCTTTTTGGCTTTCCCCGTACTCTACACACCAAATGAAATGGCTCGGATATGAAAGGACTAATAACTTTTCAGTTTTCATTACTGCGTCCTTTTTTAAGCTTTCAGTTTTAATTTGCGTGAATATACCTAATTTTTATTAGGGTAGAGTTATATGTTTCAAATTAAATTGCTACCAAGTTAAATTTAAGAATGTTACATAAATTTAGAGACGGCAAGTTTATATACCAAGAAGGGTACTCCTTCATCCACAGAGAAACGGTGTCCAGTTCGAGTATGGGCGTGAATCTAGATATAGTTAATTCCAATGCAGATATCAGACATCGAGTGAGGAAAAAAAAGATTTTATTAATTTGTTATTTTTAGGTTGCTTTTCCTTTAACTGAAAATCTAACCCGGCAGGACCACAACAGTTCTTTTCCGATCATTACTAATGATACTTGATTTTCACGTGCGATTTCTGATATTTTTATACGGAGTAGGTGAAGAGTGAAATGTTTCACGGGTCTCAAGGACAATGGCAGCAGTGCTTCATTTTTTTTTGCATCTTCACGTGCTATATTATTACTTTGTTTATACTAGTTCGACTTGGAAAATCTTTTCATATTCAGTTGTCTGGGGAATAAATAAGATATTTCTTATTTTTTGATTAAAAAAAGAAGAAGATATTTCTTATTTAAAGAAGTGACAAATTGTACTAACTCATTTACCATGCCTAATATATTATATGTGACAATGATGATTTTTTTTAACTATTAATTGTTAGTTTGGACAAAAATGATCAAAGCAAGTATATTGAATAATGCTTATTTCTTGCCAACTGGTGCATCTACGAGATTATAGGAGTTGGATTATAATTTTAGCACATCCAGCATGCTTATATGACCTTAAAATATTCATGTATATTCTGTCCACTCACCTTTTATTTCTTCATTATTTTACAGGCTTCCCCTGGCCCCAAAAAGATTGTGGGTGTTTTCTACAAAGCAAATGAATATGCTGAAATGAACCCCAACTTTTTGGGCTGTGCAGAAAATGCCTTGGGGATACGTGAATGGTTAGAGTCTAAAGGTCATCAGTACATAGTCACTCCTGACAAAGAAGGACCAGATTGTGGTTAGTTCCTGCTAATCTATAATCTCTCATGTTCTATCCATTATCCCACTGAAGCCTATGCATTTCTAAAGATAATTTCTTTACCCTTCATGCTTGTACAACTAAACACATCTTAAAAGGAGTATTTTTGCATTTAAAACATGCATATATGTGCTGAAGTTTTTTAAAAATATATGGCTCACGTGAGGAGAATATAACGGTCATAGCAGGAACATTTATTTAGATAAAGAGCAAAGCAAAGTAAACAATATTTGCTTTGTTAGTGTTGGTCCTTTGCTGCTAGTGAATTATGATCAGGACATTGTGAGGTAGTTTCTTGCAGGAGGGAAAAAAAGAGTGTATTTTACCTTGATATACAGGTGTGCATTTGCAAAACGTCTATACTTCAGGACTCAGGTGTAAGTTGTACTAGTTTGATAAGACTATGGCTAAATTTTGTAATTTAAACAAGGATTTATCAAAGTCGCAGGGGCTTGTTTAGTTGTTGAGTAGAGTGCACACATGGATGCTTTAGTGATTTTCTGATGGATGACATGCTTAGTGTAAATCCTTGCTTATTAGTATCTTTTATCATGAGAAAGAATGGTGCCCTAGTCTGACACACAAACTACTCTGTGTCTTAGTTTTTCACTGTTGAATCCTTTACTATGCTCTATGCAAAGAAATTTCTCCTGAGCTAAAGTTTTTGAGTGTGTCCATCTATAATAGCTTCTTTTTTTTTTCCCATGACTTTCTCTCTGCAGAGCTTGAGAAACACATTCCTGATCTCCATGTGTTGATTTCGACCCCTTTTCATCCTGCCTATGTCACGGCTGAAAGGATCAAGAAGGCAAAAAATCTACAACTTCTGCTGACAGCTGGAATTGGATCAGATCATGTTGATCTGAAAGCTGCTGCTGCTGCTGGATTGACAGTAGCAGAGGTCACTGGAAGCAATACTGTCTCAGTTGCGGAAGATGAACTGATGCGAATCTTAATTCTTGTCCGAAATTTCTTACCTGGACATCATCAGGTTATCAATGGGGAGTGGAATGTT-GCTGCAATTGCGCACAGAGCTTATGATTTGGAAGGCAAGACTGTTGGAACTGTTGGTGCAGGACGTATTGGCAGACTTTTACTCCAGCGATTGAAGCCATTTAACTGTAATCTACTTTACCATGACCGTCTTAAGATGGATTCTGAGC</genome_strand>
        <mrna_strand>CAAAAAATTCCGATGGCGATGAGTCGTGTAGCTTCTACAGCAGCTCGTGCTATTACTTCACCTTCATCCTTAGTTTTTACCAGAGAACTTCAG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCTTCCCCTGGCCCCAAAAAGATTGTGGGTGTTTTCTACAAAGCAAATGAATATGCTGAAATGAACCCCAACTTTTTGGGCTGTGCAGAAAATGCCTTGGGGATACGTGAATGGTTAGAATCTAAAGGTCATCAGTACATAGTCACTCCTGACAAAGAAGGACCGGATTGTG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGCTTGAGAAACACATTCCTGATCTCCATGTGTTGATTTCGACCCCTTTTCATCCTGCCTATGTCACGGCTGAAAGGATCAAGAAGGCAAAAAATCTACAACTACTGCTGACAGCTGGAATTGTATCAGATCATGTTGATCTGAAAGCTGCTGCTGCTGCTGGATTGACAGTAGCAGAGGTCACTGGAAGCAATACTGTCTCAGTTGCGGAAGATGAACTGATGCGAATCTTAATTCTTGTCCGAAATTTCTTGCCTGGACATCATCAGGTTATCAATGGGGAGTGGAATGTTNGCTGC-ATTGCGCACAGAGCTTATGATTTGGAAGGCAAGACTGTTGGAACTGTTGGTTCAGGACGTATTGGCAGACTTTTACTCCAACGATTGAAGCCATTTAACTGTAATCTACTTTA-CATGACCGTCTTAAGATGGATTCTGAGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0236E02-u8qcS/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E262001" ref_strand="+" ref_description="SGN-E262001 [cLEG-58-F21]">
      <seq>aaaaaattccgatggcgatgaggcgtgtagcttctacagcagctcgtgctattgcttcaccttcatccttagtttttaccagagaacttcaggcttcccctggccccaaaaagattgtgggtgttttctacaaagcaaatgaatatgctgaaatgaaccccaactttttgggctgtgcagaaaatgccttggggatacgtgaatggttagagtctaaaggtcatcagtacatagtcactcctgacaaagaaggaccagattgtgagcttgagaaacacattcctgatctccatgtgttgatttcgaccccttttcatcctgcctatgtcacggctgaaaggatcaagaaggcaaaaaatctacaacttctgctgacagctggaattggatcagatcatgttgatctgaaagctgctgctgctgctggattgacagtagcagaggtcactggaagcaatactgtctcagttgcggaagatgaactgatgcgaatcttaattcttgtccgaaatttct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0236E02-u8qcS/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0236E02.1" temp_strand="+" temp_description="C02HBa0236E02.1  AC215430.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0236E02 sequenced_by:kribb upload_account_name:korea">
        <position start="65298" stop="68316"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="65598" g_stop="65689" g_length="92"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="92" r_length="92" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="65690" i_stop="66849" i_length="1160">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="66850" g_stop="67021" g_length="172"/>
          <reference_exon_boundary r_type="cDNA" r_start="93" r_stop="264" r_length="172" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="67022" i_stop="67764" i_length="743">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="0.987" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="67765" g_stop="68016" g_length="252"/>
          <reference_exon_boundary r_type="cDNA" r_start="265" r_stop="516" r_length="252" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0236E02.1" gen_strand="+" ref_id="SGN-E262001" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>516</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0236E02.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E262001" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="65598" e_stop="65689"/>
          <exon e_start="66850" e_stop="67021"/>
          <exon e_start="67765" e_stop="68016"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAAAATTCCGATGGCGATGAGGCGTGTAGCTTCTACAGCAGCTCGTGCTATTGCTTCACCTTCATCCTTAGTTTTTACCAGAGAACTTCAGGTAACTAGCCATTTCTCCTCAATAGCCACTTTTTGTTGCTTTTGTTTTATATGACCTAGTTTTCGCCCTTTGATGAATTATCGGAAACCGGCACGGATCAACTCCGATTTTTCGAGAATCAAGTGAGTTGGAGATTGGAACAGAGGAAACTAAAGGAATTTAACCGTGTAAAGGAAAAAATTAAACACACTGTATTTGGTGCTCTACCCCTCGTCTCTTCTTTTTGGCTTTCCCCGTACTCTACACACCAAATGAAATGGCTCGGATATGAAAGGACTAATAACTTTTCAGTTTTCATTACTGCGTCCTTTTTTAAGCTTTCAGTTTTAATTTGCGTGAATATACCTAATTTTTATTAGGGTAGAGTTATATGTTTCAAATTAAATTGCTACCAAGTTAAATTTAAGAATGTTACATAAATTTAGAGACGGCAAGTTTATATACCAAGAAGGGTACTCCTTCATCCACAGAGAAACGGTGTCCAGTTCGAGTATGGGCGTGAATCTAGATATAGTTAATTCCAATGCAGATATCAGACATCGAGTGAGGAAAAAAAAGATTTTATTAATTTGTTATTTTTAGGTTGCTTTTCCTTTAACTGAAAATCTAACCCGGCAGGACCACAACAGTTCTTTTCCGATCATTACTAATGATACTTGATTTTCACGTGCGATTTCTGATATTTTTATACGGAGTAGGTGAAGAGTGAAATGTTTCACGGGTCTCAAGGACAATGGCAGCAGTGCTTCATTTTTTTTTGCATCTTCACGTGCTATATTATTACTTTGTTTATACTAGTTCGACTTGGAAAATCTTTTCATATTCAGTTGTCTGGGGAATAAATAAGATATTTCTTATTTTTTGATTAAAAAAAGAAGAAGATATTTCTTATTTAAAGAAGTGACAAATTGTACTAACTCATTTACCATGCCTAATATATTATATGTGACAATGATGATTTTTTTTAACTATTAATTGTTAGTTTGGACAAAAATGATCAAAGCAAGTATATTGAATAATGCTTATTTCTTGCCAACTGGTGCATCTACGAGATTATAGGAGTTGGATTATAATTTTAGCACATCCAGCATGCTTATATGACCTTAAAATATTCATGTATATTCTGTCCACTCACCTTTTATTTCTTCATTATTTTACAGGCTTCCCCTGGCCCCAAAAAGATTGTGGGTGTTTTCTACAAAGCAAATGAATATGCTGAAATGAACCCCAACTTTTTGGGCTGTGCAGAAAATGCCTTGGGGATACGTGAATGGTTAGAGTCTAAAGGTCATCAGTACATAGTCACTCCTGACAAAGAAGGACCAGATTGTGGTTAGTTCCTGCTAATCTATAATCTCTCATGTTCTATCCATTATCCCACTGAAGCCTATGCATTTCTAAAGATAATTTCTTTACCCTTCATGCTTGTACAACTAAACACATCTTAAAAGGAGTATTTTTGCATTTAAAACATGCATATATGTGCTGAAGTTTTTTAAAAATATATGGCTCACGTGAGGAGAATATAACGGTCATAGCAGGAACATTTATTTAGATAAAGAGCAAAGCAAAGTAAACAATATTTGCTTTGTTAGTGTTGGTCCTTTGCTGCTAGTGAATTATGATCAGGACATTGTGAGGTAGTTTCTTGCAGGAGGGAAAAAAAGAGTGTATTTTACCTTGATATACAGGTGTGCATTTGCAAAACGTCTATACTTCAGGACTCAGGTGTAAGTTGTACTAGTTTGATAAGACTATGGCTAAATTTTGTAATTTAAACAAGGATTTATCAAAGTCGCAGGGGCTTGTTTAGTTGTTGAGTAGAGTGCACACATGGATGCTTTAGTGATTTTCTGATGGATGACATGCTTAGTGTAAATCCTTGCTTATTAGTATCTTTTATCATGAGAAAGAATGGTGCCCTAGTCTGACACACAAACTACTCTGTGTCTTAGTTTTTCACTGTTGAATCCTTTACTATGCTCTATGCAAAGAAATTTCTCCTGAGCTAAAGTTTTTGAGTGTGTCCATCTATAATAGCTTCTTTTTTTTTTCCCATGACTTTCTCTCTGCAGAGCTTGAGAAACACATTCCTGATCTCCATGTGTTGATTTCGACCCCTTTTCATCCTGCCTATGTCACGGCTGAAAGGATCAAGAAGGCAAAAAATCTACAACTTCTGCTGACAGCTGGAATTGGATCAGATCATGTTGATCTGAAAGCTGCTGCTGCTGCTGGATTGACAGTAGCAGAGGTCACTGGAAGCAATACTGTCTCAGTTGCGGAAGATGAACTGATGCGAATCTTAATTCTTGTCCGAAATTTCT</genome_strand>
        <mrna_strand>AAAAAATTCCGATGGCGATGAGGCGTGTAGCTTCTACAGCAGCTCGTGCTATTGCTTCACCTTCATCCTTAGTTTTTACCAGAGAACTTCAG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCTTCCCCTGGCCCCAAAAAGATTGTGGGTGTTTTCTACAAAGCAAATGAATATGCTGAAATGAACCCCAACTTTTTGGGCTGTGCAGAAAATGCCTTGGGGATACGTGAATGGTTAGAGTCTAAAGGTCATCAGTACATAGTCACTCCTGACAAAGAAGGACCAGATTGTG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGCTTGAGAAACACATTCCTGATCTCCATGTGTTGATTTCGACCCCTTTTCATCCTGCCTATGTCACGGCTGAAAGGATCAAGAAGGCAAAAAATCTACAACTTCTGCTGACAGCTGGAATTGGATCAGATCATGTTGATCTGAAAGCTGCTGCTGCTGCTGGATTGACAGTAGCAGAGGTCACTGGAAGCAATACTGTCTCAGTTGCGGAAGATGAACTGATGCGAATCTTAATTCTTGTCCGAAATTTCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0236E02-u8qcS/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E567956" ref_strand="+" ref_description="SGN-E567956 [12162]">
      <seq>aaattccgatggcgatgagtcgtgtagcttctacagcagctcgtgctattacttcaccttcatccttagtttttacccagagaacttcaggcttccccttgggcccaaaaagattgtgggtgttttctacaaagcaaatgaatatgctgaaatgaaccccaactttttgggctgtgcagaaaatgcctttgggatacgtgaatggttagaatctaaaggtcatcagtacatagtcactcctgacaaagaaggaccagattgtgagcttgagaaacacattcctgatctccatgtgttgatttcgagcccttttcatcctgcctatgtcacggctgaaaggatcaagaaggcaaaaaatctacaactactgctgacagctggaattggatcagatcatgttgatctgaaagctgctgctgctgctggattgaccatggcagaagtcactggaagcaatactgtctcagttgcggaagatgaactgatgcgaatcttaattcttgtccgaaatttcttgcctggacatcatcaggttatccaatggggagtggaatgttgctgcaattgcgcacagagcttatga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0236E02-u8qcS/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0236E02.1" temp_strand="+" temp_description="C02HBa0236E02.1  AC215430.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0236E02 sequenced_by:kribb upload_account_name:korea">
        <position start="65301" stop="68383"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="65601" g_stop="65689" g_length="89"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="90" r_length="90" r_score="0.955"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="65690" i_stop="66849" i_length="1160">
            <donor d_prob="1.000" d_score="0.94"/>
            <acceptor a_prob="1.000" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="66850" g_stop="67021" g_length="172"/>
          <reference_exon_boundary r_type="cDNA" r_start="91" r_stop="263" r_length="173" r_score="0.971"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="67022" i_stop="67764" i_length="743">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="0.987" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="67765" g_stop="68083" g_length="319"/>
          <reference_exon_boundary r_type="cDNA" r_start="264" r_stop="583" r_length="320" r_score="0.972"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0236E02.1" gen_strand="+" ref_id="SGN-E567956" ref_strand="+">
        <total_alignment_score>0.969</total_alignment_score>
        <cumulative_length_of_scored_exons>580</cumulative_length_of_scored_exons>
        <coverage percentage="0.995" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0236E02.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E567956" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="65601" e_stop="65689"/>
          <exon e_start="66850" e_stop="67021"/>
          <exon e_start="67765" e_stop="68083"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAATTCCGATGGCGATGAGGCGTGTAGCTTCTACAGCAGCTCGTGCTATTGCTTCACCTTCATCCTTAGTTTTTACC-AGAGAACTTCAGGTAACTAGCCATTTCTCCTCAATAGCCACTTTTTGTTGCTTTTGTTTTATATGACCTAGTTTTCGCCCTTTGATGAATTATCGGAAACCGGCACGGATCAACTCCGATTTTTCGAGAATCAAGTGAGTTGGAGATTGGAACAGAGGAAACTAAAGGAATTTAACCGTGTAAAGGAAAAAATTAAACACACTGTATTTGGTGCTCTACCCCTCGTCTCTTCTTTTTGGCTTTCCCCGTACTCTACACACCAAATGAAATGGCTCGGATATGAAAGGACTAATAACTTTTCAGTTTTCATTACTGCGTCCTTTTTTAAGCTTTCAGTTTTAATTTGCGTGAATATACCTAATTTTTATTAGGGTAGAGTTATATGTTTCAAATTAAATTGCTACCAAGTTAAATTTAAGAATGTTACATAAATTTAGAGACGGCAAGTTTATATACCAAGAAGGGTACTCCTTCATCCACAGAGAAACGGTGTCCAGTTCGAGTATGGGCGTGAATCTAGATATAGTTAATTCCAATGCAGATATCAGACATCGAGTGAGGAAAAAAAAGATTTTATTAATTTGTTATTTTTAGGTTGCTTTTCCTTTAACTGAAAATCTAACCCGGCAGGACCACAACAGTTCTTTTCCGATCATTACTAATGATACTTGATTTTCACGTGCGATTTCTGATATTTTTATACGGAGTAGGTGAAGAGTGAAATGTTTCACGGGTCTCAAGGACAATGGCAGCAGTGCTTCATTTTTTTTTGCATCTTCACGTGCTATATTATTACTTTGTTTATACTAGTTCGACTTGGAAAATCTTTTCATATTCAGTTGTCTGGGGAATAAATAAGATATTTCTTATTTTTTGATTAAAAAAAGAAGAAGATATTTCTTATTTAAAGAAGTGACAAATTGTACTAACTCATTTACCATGCCTAATATATTATATGTGACAATGATGATTTTTTTTAACTATTAATTGTTAGTTTGGACAAAAATGATCAAAGCAAGTATATTGAATAATGCTTATTTCTTGCCAACTGGTGCATCTACGAGATTATAGGAGTTGGATTATAATTTTAGCACATCCAGCATGCTTATATGACCTTAAAATATTCATGTATATTCTGTCCACTCACCTTTTATTTCTTCATTATTTTACAGGCTTCCCC-TGGCCCCAAAAAGATTGTGGGTGTTTTCTACAAAGCAAATGAATATGCTGAAATGAACCCCAACTTTTTGGGCTGTGCAGAAAATGCCTTGGGGATACGTGAATGGTTAGAGTCTAAAGGTCATCAGTACATAGTCACTCCTGACAAAGAAGGACCAGATTGTGGTTAGTTCCTGCTAATCTATAATCTCTCATGTTCTATCCATTATCCCACTGAAGCCTATGCATTTCTAAAGATAATTTCTTTACCCTTCATGCTTGTACAACTAAACACATCTTAAAAGGAGTATTTTTGCATTTAAAACATGCATATATGTGCTGAAGTTTTTTAAAAATATATGGCTCACGTGAGGAGAATATAACGGTCATAGCAGGAACATTTATTTAGATAAAGAGCAAAGCAAAGTAAACAATATTTGCTTTGTTAGTGTTGGTCCTTTGCTGCTAGTGAATTATGATCAGGACATTGTGAGGTAGTTTCTTGCAGGAGGGAAAAAAAGAGTGTATTTTACCTTGATATACAGGTGTGCATTTGCAAAACGTCTATACTTCAGGACTCAGGTGTAAGTTGTACTAGTTTGATAAGACTATGGCTAAATTTTGTAATTTAAACAAGGATTTATCAAAGTCGCAGGGGCTTGTTTAGTTGTTGAGTAGAGTGCACACATGGATGCTTTAGTGATTTTCTGATGGATGACATGCTTAGTGTAAATCCTTGCTTATTAGTATCTTTTATCATGAGAAAGAATGGTGCCCTAGTCTGACACACAAACTACTCTGTGTCTTAGTTTTTCACTGTTGAATCCTTTACTATGCTCTATGCAAAGAAATTTCTCCTGAGCTAAAGTTTTTGAGTGTGTCCATCTATAATAGCTTCTTTTTTTTTTCCCATGACTTTCTCTCTGCAGAGCTTGAGAAACACATTCCTGATCTCCATGTGTTGATTTCGACCCCTTTTCATCCTGCCTATGTCACGGCTGAAAGGATCAAGAAGGCAAAAAATCTACAACTTCTGCTGACAGCTGGAATTGGATCAGATCATGTTGATCTGAAAGCTGCTGCTGCTGCTGGATTGACAGTAGCAGAGGTCACTGGAAGCAATACTGTCTCAGTTGCGGAAGATGAACTGATGCGAATCTTAATTCTTGTCCGAAATTTCTTACCTGGACATCATCAGGTTAT-CAATGGGGAGTGGAATGTTGCTGCAATTGCGCACAGAGCTTATGA</genome_strand>
        <mrna_strand>AAATTCCGATGGCGATGAGTCGTGTAGCTTCTACAGCAGCTCGTGCTATTACTTCACCTTCATCCTTAGTTTTTACCCAGAGAACTTCAG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCTTCCCCTTGGGCCCAAAAAGATTGTGGGTGTTTTCTACAAAGCAAATGAATATGCTGAAATGAACCCCAACTTTTTGGGCTGTGCAGAAAATGCCTTTGGGATACGTGAATGGTTAGAATCTAAAGGTCATCAGTACATAGTCACTCCTGACAAAGAAGGACCAGATTGTG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGCTTGAGAAACACATTCCTGATCTCCATGTGTTGATTTCGAGCCCTTTTCATCCTGCCTATGTCACGGCTGAAAGGATCAAGAAGGCAAAAAATCTACAACTACTGCTGACAGCTGGAATTGGATCAGATCATGTTGATCTGAAAGCTGCTGCTGCTGCTGGATTGACCATGGCAGAAGTCACTGGAAGCAATACTGTCTCAGTTGCGGAAGATGAACTGATGCGAATCTTAATTCTTGTCCGAAATTTCTTGCCTGGACATCATCAGGTTATCCAATGGGGAGTGGAATGTTGCTGCAATTGCGCACAGAGCTTATGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0236E02-u8qcS/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E320994" ref_strand="+" ref_description="SGN-E320994 [cTOB-13-D21]">
      <seq>aaattccgatggcgatgaggcgtgtagcttctacagcagctcgtgctattgcttcaccttcatccttagtttttaccagagaacttcaagcttcccctggccccaaaaagattgtgggtgttttctacaaagcaaatgaatatgctgaaatgaaccccaactttttgggctgtgcagaaaatgccttggggatacgtgaatggttagagtctaaaggtcatcagtacatagtcactcctgacaaagaaggaccagattgtgagcttgagaaacacattcctgatctccatgtgttgatttcgaccccttttcatcctgcctatgtcacggctgaaaggatcaagaaggcaaaaaatctacaacttctgctgacagctggaattggatcagatcatgttgatctgaaagctgctgctgctgctggattgacagtagcagaagtcactggaagcaatactgtctcagttgcggaagatgaactgatgcgaatcttaattc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0236E02-u8qcS/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0236E02.1" temp_strand="+" temp_description="C02HBa0236E02.1  AC215430.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0236E02 sequenced_by:kribb upload_account_name:korea">
        <position start="65301" stop="68301"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="65601" g_stop="65689" g_length="89"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="89" r_length="89" r_score="0.989"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="65690" i_stop="66849" i_length="1160">
            <donor d_prob="1.000" d_score="0.98"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="66850" g_stop="67021" g_length="172"/>
          <reference_exon_boundary r_type="cDNA" r_start="90" r_stop="261" r_length="172" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="67022" i_stop="67764" i_length="743">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="0.987" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="67765" g_stop="68001" g_length="237"/>
          <reference_exon_boundary r_type="cDNA" r_start="262" r_stop="498" r_length="237" r_score="0.996"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0236E02.1" gen_strand="+" ref_id="SGN-E320994" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>498</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0236E02.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E320994" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="65601" e_stop="65689"/>
          <exon e_start="66850" e_stop="67021"/>
          <exon e_start="67765" e_stop="68001"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAATTCCGATGGCGATGAGGCGTGTAGCTTCTACAGCAGCTCGTGCTATTGCTTCACCTTCATCCTTAGTTTTTACCAGAGAACTTCAGGTAACTAGCCATTTCTCCTCAATAGCCACTTTTTGTTGCTTTTGTTTTATATGACCTAGTTTTCGCCCTTTGATGAATTATCGGAAACCGGCACGGATCAACTCCGATTTTTCGAGAATCAAGTGAGTTGGAGATTGGAACAGAGGAAACTAAAGGAATTTAACCGTGTAAAGGAAAAAATTAAACACACTGTATTTGGTGCTCTACCCCTCGTCTCTTCTTTTTGGCTTTCCCCGTACTCTACACACCAAATGAAATGGCTCGGATATGAAAGGACTAATAACTTTTCAGTTTTCATTACTGCGTCCTTTTTTAAGCTTTCAGTTTTAATTTGCGTGAATATACCTAATTTTTATTAGGGTAGAGTTATATGTTTCAAATTAAATTGCTACCAAGTTAAATTTAAGAATGTTACATAAATTTAGAGACGGCAAGTTTATATACCAAGAAGGGTACTCCTTCATCCACAGAGAAACGGTGTCCAGTTCGAGTATGGGCGTGAATCTAGATATAGTTAATTCCAATGCAGATATCAGACATCGAGTGAGGAAAAAAAAGATTTTATTAATTTGTTATTTTTAGGTTGCTTTTCCTTTAACTGAAAATCTAACCCGGCAGGACCACAACAGTTCTTTTCCGATCATTACTAATGATACTTGATTTTCACGTGCGATTTCTGATATTTTTATACGGAGTAGGTGAAGAGTGAAATGTTTCACGGGTCTCAAGGACAATGGCAGCAGTGCTTCATTTTTTTTTGCATCTTCACGTGCTATATTATTACTTTGTTTATACTAGTTCGACTTGGAAAATCTTTTCATATTCAGTTGTCTGGGGAATAAATAAGATATTTCTTATTTTTTGATTAAAAAAAGAAGAAGATATTTCTTATTTAAAGAAGTGACAAATTGTACTAACTCATTTACCATGCCTAATATATTATATGTGACAATGATGATTTTTTTTAACTATTAATTGTTAGTTTGGACAAAAATGATCAAAGCAAGTATATTGAATAATGCTTATTTCTTGCCAACTGGTGCATCTACGAGATTATAGGAGTTGGATTATAATTTTAGCACATCCAGCATGCTTATATGACCTTAAAATATTCATGTATATTCTGTCCACTCACCTTTTATTTCTTCATTATTTTACAGGCTTCCCCTGGCCCCAAAAAGATTGTGGGTGTTTTCTACAAAGCAAATGAATATGCTGAAATGAACCCCAACTTTTTGGGCTGTGCAGAAAATGCCTTGGGGATACGTGAATGGTTAGAGTCTAAAGGTCATCAGTACATAGTCACTCCTGACAAAGAAGGACCAGATTGTGGTTAGTTCCTGCTAATCTATAATCTCTCATGTTCTATCCATTATCCCACTGAAGCCTATGCATTTCTAAAGATAATTTCTTTACCCTTCATGCTTGTACAACTAAACACATCTTAAAAGGAGTATTTTTGCATTTAAAACATGCATATATGTGCTGAAGTTTTTTAAAAATATATGGCTCACGTGAGGAGAATATAACGGTCATAGCAGGAACATTTATTTAGATAAAGAGCAAAGCAAAGTAAACAATATTTGCTTTGTTAGTGTTGGTCCTTTGCTGCTAGTGAATTATGATCAGGACATTGTGAGGTAGTTTCTTGCAGGAGGGAAAAAAAGAGTGTATTTTACCTTGATATACAGGTGTGCATTTGCAAAACGTCTATACTTCAGGACTCAGGTGTAAGTTGTACTAGTTTGATAAGACTATGGCTAAATTTTGTAATTTAAACAAGGATTTATCAAAGTCGCAGGGGCTTGTTTAGTTGTTGAGTAGAGTGCACACATGGATGCTTTAGTGATTTTCTGATGGATGACATGCTTAGTGTAAATCCTTGCTTATTAGTATCTTTTATCATGAGAAAGAATGGTGCCCTAGTCTGACACACAAACTACTCTGTGTCTTAGTTTTTCACTGTTGAATCCTTTACTATGCTCTATGCAAAGAAATTTCTCCTGAGCTAAAGTTTTTGAGTGTGTCCATCTATAATAGCTTCTTTTTTTTTTCCCATGACTTTCTCTCTGCAGAGCTTGAGAAACACATTCCTGATCTCCATGTGTTGATTTCGACCCCTTTTCATCCTGCCTATGTCACGGCTGAAAGGATCAAGAAGGCAAAAAATCTACAACTTCTGCTGACAGCTGGAATTGGATCAGATCATGTTGATCTGAAAGCTGCTGCTGCTGCTGGATTGACAGTAGCAGAGGTCACTGGAAGCAATACTGTCTCAGTTGCGGAAGATGAACTGATGCGAATCTTAATTC</genome_strand>
        <mrna_strand>AAATTCCGATGGCGATGAGGCGTGTAGCTTCTACAGCAGCTCGTGCTATTGCTTCACCTTCATCCTTAGTTTTTACCAGAGAACTTCAA........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCTTCCCCTGGCCCCAAAAAGATTGTGGGTGTTTTCTACAAAGCAAATGAATATGCTGAAATGAACCCCAACTTTTTGGGCTGTGCAGAAAATGCCTTGGGGATACGTGAATGGTTAGAGTCTAAAGGTCATCAGTACATAGTCACTCCTGACAAAGAAGGACCAGATTGTG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGCTTGAGAAACACATTCCTGATCTCCATGTGTTGATTTCGACCCCTTTTCATCCTGCCTATGTCACGGCTGAAAGGATCAAGAAGGCAAAAAATCTACAACTTCTGCTGACAGCTGGAATTGGATCAGATCATGTTGATCTGAAAGCTGCTGCTGCTGCTGGATTGACAGTAGCAGAAGTCACTGGAAGCAATACTGTCTCAGTTGCGGAAGATGAACTGATGCGAATCTTAATTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0236E02-u8qcS/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E624054" ref_strand="+" ref_description="SGN-E624054 [GI|11991526]">
      <seq>ttccgatggcgatgagtcgtgtagcttctacagcagctcgtgctattacttcaccttcatccttagtttttaccagagaacttcaggcttcccctggccccaaaaagattgtgggtgttttctacaaagcaaatgaatatgctgaaatgaaccccaactttttgggctgtgcagaaaatgccttggggatacgtgaatggttagaatctaaaggtcatcagtacatagtcactcctgacaaagaaggaccagattgtgagcttgagaaacacattcctgatctccatgtgttgatttcgaccccttttcatcctgcctatgtcacggctgaaaggatcaagaaggcaaaaaatctacaactactgctgacagctggaattggatcagatcatgttgatctgaaagctgctgctgctgctggattgacagtggcagaagtcactggaagcaatactgtctcagttgcggaagatgaactgatgcgaatcttaattcttgtccgaaatttcttgcctggacatcatcaggttatcaatggggagtggaatgttgctgcaattgcgcacagagcttatgatttggaaggcaagactgttggaactgttggtgcaggacgtattggcagacttttactccaacgattgaagccatttaactgtaatctactttaccatgaccgtcttaagatggattctgagctagagaatcaaattggagcaaagttcgaggaagatctcgataaaatgctctcgaaatgtgacatagtggtcatcaatacgcctcttacagagaaaacaaaaggaatgtttgacaaggaaagaattgcaaagttgaagaagggagttctaattgtaaacaatgctcgaggagcaattatggacactcaagcagttgttgatgcttgtaacagcggtcatattgcaggatacagtggagatgtttggtacccacaaccagctcccaaggaccatccgtggcgctacatgccaaaccaagctatgactcctcacatttctgggactaccattgatgcacagttgaggtatgcagctggaacaaaggatatgttggacaggtacttcaagggtgaggatttccctgctgaaaattacattgtcaaggatggggaattggcacctcagtatcgctaaatcattaatgtaccttagttgtgcctagatttctgtgtcaaataaactggcaagctgcgtcttcaataagctgataaaattggctacttatgttcttttagaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0236E02-u8qcS/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0236E02.1" temp_strand="+" temp_description="C02HBa0236E02.1  AC215430.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0236E02 sequenced_by:kribb upload_account_name:korea">
        <position start="65304" stop="70147"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="65604" g_stop="65689" g_length="86"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="86" r_length="86" r_score="0.977"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="65690" i_stop="66849" i_length="1160">
            <donor d_prob="1.000" d_score="0.98"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="66850" g_stop="67021" g_length="172"/>
          <reference_exon_boundary r_type="cDNA" r_start="87" r_stop="258" r_length="172" r_score="0.994"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="67022" i_stop="67764" i_length="743">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="0.987" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="67765" g_stop="68305" g_length="541"/>
          <reference_exon_boundary r_type="cDNA" r_start="259" r_stop="799" r_length="541" r_score="0.987"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="68306" i_stop="69046" i_length="741">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.768" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="69047" g_stop="69171" g_length="125"/>
          <reference_exon_boundary r_type="cDNA" r_start="800" r_stop="924" r_length="125" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="69172" i_stop="69406" i_length="235">
            <donor d_prob="0.983" d_score="1.00"/>
            <acceptor a_prob="0.964" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="69407" g_stop="69519" g_length="113"/>
          <reference_exon_boundary r_type="cDNA" r_start="925" r_stop="1037" r_length="113" r_score="0.973"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="69520" i_stop="69630" i_length="111">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.989" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="69631" g_stop="69855" g_length="225"/>
          <reference_exon_boundary r_type="cDNA" r_start="1038" r_stop="1262" r_length="225" r_score="0.916"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0236E02.1" gen_strand="+" ref_id="SGN-E624054" ref_strand="+">
        <total_alignment_score>0.975</total_alignment_score>
        <cumulative_length_of_scored_exons>1262</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0236E02.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E624054" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="65604" e_stop="65689"/>
          <exon e_start="66850" e_stop="67021"/>
          <exon e_start="67765" e_stop="68305"/>
          <exon e_start="69047" e_stop="69171"/>
          <exon e_start="69407" e_stop="69519"/>
          <exon e_start="69631" e_stop="69855"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTCCGATGGCGATGAGGCGTGTAGCTTCTACAGCAGCTCGTGCTATTGCTTCACCTTCATCCTTAGTTTTTACCAGAGAACTTCAGGTAACTAGCCATTTCTCCTCAATAGCCACTTTTTGTTGCTTTTGTTTTATATGACCTAGTTTTCGCCCTTTGATGAATTATCGGAAACCGGCACGGATCAACTCCGATTTTTCGAGAATCAAGTGAGTTGGAGATTGGAACAGAGGAAACTAAAGGAATTTAACCGTGTAAAGGAAAAAATTAAACACACTGTATTTGGTGCTCTACCCCTCGTCTCTTCTTTTTGGCTTTCCCCGTACTCTACACACCAAATGAAATGGCTCGGATATGAAAGGACTAATAACTTTTCAGTTTTCATTACTGCGTCCTTTTTTAAGCTTTCAGTTTTAATTTGCGTGAATATACCTAATTTTTATTAGGGTAGAGTTATATGTTTCAAATTAAATTGCTACCAAGTTAAATTTAAGAATGTTACATAAATTTAGAGACGGCAAGTTTATATACCAAGAAGGGTACTCCTTCATCCACAGAGAAACGGTGTCCAGTTCGAGTATGGGCGTGAATCTAGATATAGTTAATTCCAATGCAGATATCAGACATCGAGTGAGGAAAAAAAAGATTTTATTAATTTGTTATTTTTAGGTTGCTTTTCCTTTAACTGAAAATCTAACCCGGCAGGACCACAACAGTTCTTTTCCGATCATTACTAATGATACTTGATTTTCACGTGCGATTTCTGATATTTTTATACGGAGTAGGTGAAGAGTGAAATGTTTCACGGGTCTCAAGGACAATGGCAGCAGTGCTTCATTTTTTTTTGCATCTTCACGTGCTATATTATTACTTTGTTTATACTAGTTCGACTTGGAAAATCTTTTCATATTCAGTTGTCTGGGGAATAAATAAGATATTTCTTATTTTTTGATTAAAAAAAGAAGAAGATATTTCTTATTTAAAGAAGTGACAAATTGTACTAACTCATTTACCATGCCTAATATATTATATGTGACAATGATGATTTTTTTTAACTATTAATTGTTAGTTTGGACAAAAATGATCAAAGCAAGTATATTGAATAATGCTTATTTCTTGCCAACTGGTGCATCTACGAGATTATAGGAGTTGGATTATAATTTTAGCACATCCAGCATGCTTATATGACCTTAAAATATTCATGTATATTCTGTCCACTCACCTTTTATTTCTTCATTATTTTACAGGCTTCCCCTGGCCCCAAAAAGATTGTGGGTGTTTTCTACAAAGCAAATGAATATGCTGAAATGAACCCCAACTTTTTGGGCTGTGCAGAAAATGCCTTGGGGATACGTGAATGGTTAGAGTCTAAAGGTCATCAGTACATAGTCACTCCTGACAAAGAAGGACCAGATTGTGGTTAGTTCCTGCTAATCTATAATCTCTCATGTTCTATCCATTATCCCACTGAAGCCTATGCATTTCTAAAGATAATTTCTTTACCCTTCATGCTTGTACAACTAAACACATCTTAAAAGGAGTATTTTTGCATTTAAAACATGCATATATGTGCTGAAGTTTTTTAAAAATATATGGCTCACGTGAGGAGAATATAACGGTCATAGCAGGAACATTTATTTAGATAAAGAGCAAAGCAAAGTAAACAATATTTGCTTTGTTAGTGTTGGTCCTTTGCTGCTAGTGAATTATGATCAGGACATTGTGAGGTAGTTTCTTGCAGGAGGGAAAAAAAGAGTGTATTTTACCTTGATATACAGGTGTGCATTTGCAAAACGTCTATACTTCAGGACTCAGGTGTAAGTTGTACTAGTTTGATAAGACTATGGCTAAATTTTGTAATTTAAACAAGGATTTATCAAAGTCGCAGGGGCTTGTTTAGTTGTTGAGTAGAGTGCACACATGGATGCTTTAGTGATTTTCTGATGGATGACATGCTTAGTGTAAATCCTTGCTTATTAGTATCTTTTATCATGAGAAAGAATGGTGCCCTAGTCTGACACACAAACTACTCTGTGTCTTAGTTTTTCACTGTTGAATCCTTTACTATGCTCTATGCAAAGAAATTTCTCCTGAGCTAAAGTTTTTGAGTGTGTCCATCTATAATAGCTTCTTTTTTTTTTCCCATGACTTTCTCTCTGCAGAGCTTGAGAAACACATTCCTGATCTCCATGTGTTGATTTCGACCCCTTTTCATCCTGCCTATGTCACGGCTGAAAGGATCAAGAAGGCAAAAAATCTACAACTTCTGCTGACAGCTGGAATTGGATCAGATCATGTTGATCTGAAAGCTGCTGCTGCTGCTGGATTGACAGTAGCAGAGGTCACTGGAAGCAATACTGTCTCAGTTGCGGAAGATGAACTGATGCGAATCTTAATTCTTGTCCGAAATTTCTTACCTGGACATCATCAGGTTATCAATGGGGAGTGGAATGTTGCTGCAATTGCGCACAGAGCTTATGATTTGGAAGGCAAGACTGTTGGAACTGTTGGTGCAGGACGTATTGGCAGACTTTTACTCCAGCGATTGAAGCCATTTAACTGTAATCTACTTTACCATGACCGTCTTAAGATGGATTCTGAGCTAGAGAATCAAATTGGAGCAAAGTTTGAGGAAGATCTCGATAAGATGCTCTCGAAATGTGACATAGTGGTCATCAATACGCCTCTTACAGAGAAAACAAAGTAAGGTTTCTGTTTCTGTAATTACCCGTCGTAAACCTATACAATAATATTTATTGACAAAGCTTCTTATATTCAAGTTATTTTAACAATGACTTAATTATGAAATGAACTAAGTAAGCTAAAGTGAATATTCATTGAGAATGAAATATGATATTTAGCGAAGGGAAGGAGAATCTTTGGTGTCATCGTAATTTTTTGGTATCACTCTAGATCATATATAAAGTAGTTGTATATTTAGATTCCCCGATTGTATTCCCTAAGTTAAGAAATTCTCTTGAGCATCCACCATATACTATGATACATGACTTTGGCTAAGCTCAAAAAGACTATCTCAATGATGGCCCTCCATGGATTCTCCACCTATATAAGCCACGGCTAAAGAAAAATTGCTTGGCCAAGTTGTCTTTTACCTTTGGCATGATGCAAAAAACATTTGATATTCTTTCTGTGTGAACCACTGCTACGAGTAATATGTTCTTAGAGATCATGTTTTCTTTTTGTTCTTCCTTTAATTTTCTATTTGAAGATTTGTCATCAGTTAGAGGTCATCGGTAGGATGATAGATGTTCTCAGCAACTTGTGTTGCCAGAATAATATGATTGCCAATGGAGTATTTTTAAGATTCTTGGAGATGTAAGAGTTGTTTCTGTCCATACATCACTCTTCTCATGTCACTAAGGTCATTGATTGTTTCCATGTGCTATATCGCAAATTGCTCACAATTTTAACTATGTGATCCAGAGGAATGTTTGACAAGGAAAGAATTGCAAAGTTGAAGAAGGGAGTTCTAATTGTAAACAATGCTCGAGGAGCAATTATGGACACTCAAGCAGTTGTTGATGCTTGTAACAGCGGTCATATTGCAGGTATTTTAACATAACTTGAACACATCATCCAGAGATGAGCCCTCAGCCTTAATATCAATTGAACACACCATTATATTTTTTTCTTCAATTCTTGCTTGTTTCTTTTCTTCAATATATTTTATCGACATTTGGAAGTAGTTCCATATCTTGTGGAATTGCCGAATCCTTTGAAGAAAGAAGTACTTCTAAAACTATATTGAGTTCTTTTCTTTCGGTTATTTCCCCCCAAATTTAGGATACAGTGGAGATGTTTGGTACCCACAACCAGCTCCCAAGGACCATCTATGGCGTTACATGCCAAACCAAGCTATGACTCCTCACATTTCTGGGACTACCATTGATGCACAGGTTTGTAAATACTCTGTTTCTCTAATTTCTTTAGGCTTTGCTTTTTCTTTACTTTCACGACATTATAATTGCGATTAAACTGAGAGAAGCTTGTTACTTTCAATTTCGCAGTTGAGGTATGCAGCTGGAACAAAGGATATGTTGGACAGGTACTTCAAGGGTGAGGATTTCCCTGCTGAAAATTACATTGTCAAGGATGGGGAATTGGCACCTCAGTATCGCTAAATTATTTATGTA-TAGAGTTGTGTCTAGATTTCTGTGTTAAATAAACTGGCAAGCCGTGTCTTCAATAAGCTGATAAAATTGGCTACTTTATGTTCTTCTAGAACTCTAATG</genome_strand>
        <mrna_strand>TTCCGATGGCGATGAGTCGTGTAGCTTCTACAGCAGCTCGTGCTATTACTTCACCTTCATCCTTAGTTTTTACCAGAGAACTTCAG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCTTCCCCTGGCCCCAAAAAGATTGTGGGTGTTTTCTACAAAGCAAATGAATATGCTGAAATGAACCCCAACTTTTTGGGCTGTGCAGAAAATGCCTTGGGGATACGTGAATGGTTAGAATCTAAAGGTCATCAGTACATAGTCACTCCTGACAAAGAAGGACCAGATTGTG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGCTTGAGAAACACATTCCTGATCTCCATGTGTTGATTTCGACCCCTTTTCATCCTGCCTATGTCACGGCTGAAAGGATCAAGAAGGCAAAAAATCTACAACTACTGCTGACAGCTGGAATTGGATCAGATCATGTTGATCTGAAAGCTGCTGCTGCTGCTGGATTGACAGTGGCAGAAGTCACTGGAAGCAATACTGTCTCAGTTGCGGAAGATGAACTGATGCGAATCTTAATTCTTGTCCGAAATTTCTTGCCTGGACATCATCAGGTTATCAATGGGGAGTGGAATGTTGCTGCAATTGCGCACAGAGCTTATGATTTGGAAGGCAAGACTGTTGGAACTGTTGGTGCAGGACGTATTGGCAGACTTTTACTCCAACGATTGAAGCCATTTAACTGTAATCTACTTTACCATGACCGTCTTAAGATGGATTCTGAGCTAGAGAATCAAATTGGAGCAAAGTTCGAGGAAGATCTCGATAAAATGCTCTCGAAATGTGACATAGTGGTCATCAATACGCCTCTTACAGAGAAAACAAA.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGGAATGTTTGACAAGGAAAGAATTGCAAAGTTGAAGAAGGGAGTTCTAATTGTAAACAATGCTCGAGGAGCAATTATGGACACTCAAGCAGTTGTTGATGCTTGTAACAGCGGTCATATTGCAG...........................................................................................................................................................................................................................................GATACAGTGGAGATGTTTGGTACCCACAACCAGCTCCCAAGGACCATCCGTGGCGCTACATGCCAAACCAAGCTATGACTCCTCACATTTCTGGGACTACCATTGATGCACAG...............................................................................................................TTGAGGTATGCAGCTGGAACAAAGGATATGTTGGACAGGTACTTCAAGGGTGAGGATTTCCCTGCTGAAAATTACATTGTCAAGGATGGGGAATTGGCACCTCAGTATCGCTAAATCATTAATGTACCTTAGTTGTGCCTAGATTTCTGTGTCAAATAAACTGGCAAGCTGCGTCTTCAATAAGCTGATAAAATTGGCTAC-TTATGTTCTTTTAGAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0236E02-u8qcS/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E318654" ref_strand="+" ref_description="SGN-E318654 [cTOB-9-P24]">
      <seq>gaggcgtgtagcttctacagcagctcgtgctattgcttcaccttcatccttagttcttaccatataacttcaggcttcccctggccccaaaaagatagcgggtgttttctacaaagcaaatgaatatgctgaaatgaaccccaactttttgggctgcgcagaaaatgccttgaggatacgtgaatggttagagtctaaaggtcatcagtacatagtcactcctgacaaagaaggaccagattgtgagcttgagaaacacattcctgatctgcatgtgttgatttcgaccccttttcatcctgcctatgtcacggctgaaaggatc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0236E02-u8qcS/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0236E02.1" temp_strand="+" temp_description="C02HBa0236E02.1  AC215430.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0236E02 sequenced_by:kribb upload_account_name:korea">
        <position start="65317" stop="68144"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="65617" g_stop="65689" g_length="73"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="73" r_length="73" r_score="0.959"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="65690" i_stop="66849" i_length="1160">
            <donor d_prob="1.000" d_score="0.94"/>
            <acceptor a_prob="1.000" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="66850" g_stop="67021" g_length="172"/>
          <reference_exon_boundary r_type="cDNA" r_start="74" r_stop="245" r_length="172" r_score="0.977"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="67022" i_stop="67764" i_length="743">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="0.987" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="67765" g_stop="67844" g_length="80"/>
          <reference_exon_boundary r_type="cDNA" r_start="246" r_stop="325" r_length="80" r_score="0.988"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0236E02.1" gen_strand="+" ref_id="SGN-E318654" ref_strand="+">
        <total_alignment_score>0.975</total_alignment_score>
        <cumulative_length_of_scored_exons>325</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0236E02.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E318654" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="65617" e_stop="65689"/>
          <exon e_start="66850" e_stop="67021"/>
          <exon e_start="67765" e_stop="67844"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAGGCGTGTAGCTTCTACAGCAGCTCGTGCTATTGCTTCACCTTCATCCTTAGTTTTTACCAGAGAACTTCAGGTAACTAGCCATTTCTCCTCAATAGCCACTTTTTGTTGCTTTTGTTTTATATGACCTAGTTTTCGCCCTTTGATGAATTATCGGAAACCGGCACGGATCAACTCCGATTTTTCGAGAATCAAGTGAGTTGGAGATTGGAACAGAGGAAACTAAAGGAATTTAACCGTGTAAAGGAAAAAATTAAACACACTGTATTTGGTGCTCTACCCCTCGTCTCTTCTTTTTGGCTTTCCCCGTACTCTACACACCAAATGAAATGGCTCGGATATGAAAGGACTAATAACTTTTCAGTTTTCATTACTGCGTCCTTTTTTAAGCTTTCAGTTTTAATTTGCGTGAATATACCTAATTTTTATTAGGGTAGAGTTATATGTTTCAAATTAAATTGCTACCAAGTTAAATTTAAGAATGTTACATAAATTTAGAGACGGCAAGTTTATATACCAAGAAGGGTACTCCTTCATCCACAGAGAAACGGTGTCCAGTTCGAGTATGGGCGTGAATCTAGATATAGTTAATTCCAATGCAGATATCAGACATCGAGTGAGGAAAAAAAAGATTTTATTAATTTGTTATTTTTAGGTTGCTTTTCCTTTAACTGAAAATCTAACCCGGCAGGACCACAACAGTTCTTTTCCGATCATTACTAATGATACTTGATTTTCACGTGCGATTTCTGATATTTTTATACGGAGTAGGTGAAGAGTGAAATGTTTCACGGGTCTCAAGGACAATGGCAGCAGTGCTTCATTTTTTTTTGCATCTTCACGTGCTATATTATTACTTTGTTTATACTAGTTCGACTTGGAAAATCTTTTCATATTCAGTTGTCTGGGGAATAAATAAGATATTTCTTATTTTTTGATTAAAAAAAGAAGAAGATATTTCTTATTTAAAGAAGTGACAAATTGTACTAACTCATTTACCATGCCTAATATATTATATGTGACAATGATGATTTTTTTTAACTATTAATTGTTAGTTTGGACAAAAATGATCAAAGCAAGTATATTGAATAATGCTTATTTCTTGCCAACTGGTGCATCTACGAGATTATAGGAGTTGGATTATAATTTTAGCACATCCAGCATGCTTATATGACCTTAAAATATTCATGTATATTCTGTCCACTCACCTTTTATTTCTTCATTATTTTACAGGCTTCCCCTGGCCCCAAAAAGATTGTGGGTGTTTTCTACAAAGCAAATGAATATGCTGAAATGAACCCCAACTTTTTGGGCTGTGCAGAAAATGCCTTGGGGATACGTGAATGGTTAGAGTCTAAAGGTCATCAGTACATAGTCACTCCTGACAAAGAAGGACCAGATTGTGGTTAGTTCCTGCTAATCTATAATCTCTCATGTTCTATCCATTATCCCACTGAAGCCTATGCATTTCTAAAGATAATTTCTTTACCCTTCATGCTTGTACAACTAAACACATCTTAAAAGGAGTATTTTTGCATTTAAAACATGCATATATGTGCTGAAGTTTTTTAAAAATATATGGCTCACGTGAGGAGAATATAACGGTCATAGCAGGAACATTTATTTAGATAAAGAGCAAAGCAAAGTAAACAATATTTGCTTTGTTAGTGTTGGTCCTTTGCTGCTAGTGAATTATGATCAGGACATTGTGAGGTAGTTTCTTGCAGGAGGGAAAAAAAGAGTGTATTTTACCTTGATATACAGGTGTGCATTTGCAAAACGTCTATACTTCAGGACTCAGGTGTAAGTTGTACTAGTTTGATAAGACTATGGCTAAATTTTGTAATTTAAACAAGGATTTATCAAAGTCGCAGGGGCTTGTTTAGTTGTTGAGTAGAGTGCACACATGGATGCTTTAGTGATTTTCTGATGGATGACATGCTTAGTGTAAATCCTTGCTTATTAGTATCTTTTATCATGAGAAAGAATGGTGCCCTAGTCTGACACACAAACTACTCTGTGTCTTAGTTTTTCACTGTTGAATCCTTTACTATGCTCTATGCAAAGAAATTTCTCCTGAGCTAAAGTTTTTGAGTGTGTCCATCTATAATAGCTTCTTTTTTTTTTCCCATGACTTTCTCTCTGCAGAGCTTGAGAAACACATTCCTGATCTCCATGTGTTGATTTCGACCCCTTTTCATCCTGCCTATGTCACGGCTGAAAGGATC</genome_strand>
        <mrna_strand>GAGGCGTGTAGCTTCTACAGCAGCTCGTGCTATTGCTTCACCTTCATCCTTAGTTCTTACCATATAACTTCAG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCTTCCCCTGGCCCCAAAAAGATAGCGGGTGTTTTCTACAAAGCAAATGAATATGCTGAAATGAACCCCAACTTTTTGGGCTGCGCAGAAAATGCCTTGAGGATACGTGAATGGTTAGAGTCTAAAGGTCATCAGTACATAGTCACTCCTGACAAAGAAGGACCAGATTGTG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGCTTGAGAAACACATTCCTGATCTGCATGTGTTGATTTCGACCCCTTTTCATCCTGCCTATGTCACGGCTGAAAGGATC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0236E02-u8qcS/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E416665" ref_strand="+" ref_description="SGN-E416665 [STM-23-M6]">
      <seq>tcgtgtagcttctacagcagctcgtgctattaccttcaccttcattccttagtttttaccagagaacttcaggcttcccctggccccaaaaagaattgtgggtgttttctacaaagcaaatgaatatgctgaaatgaaccccaactttttgggctgtgcagaaaatgccttggggatacgtgaatggttagaatctaaaggtcatcagtacatagtcactcctgacaaagaaggaccagattgtgagcttgagaaacacattcctgatctccatgtgttgatttcgaccccttttcatcctgcctatgtcacggctgaaaggatcaagaaggcaaaaaatctacaactactgctgacagctggaattggatcagatcatgttgatctgaaagctgctgctgctgctggattgacagtggcagaagtcactggaagcaatactgtctcagttgcggaagatgaactgatgcgaatct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0236E02-u8qcS/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0236E02.1" temp_strand="+" temp_description="C02HBa0236E02.1  AC215430.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0236E02 sequenced_by:kribb upload_account_name:korea">
        <position start="65321" stop="68295"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="65620" g_stop="65689" g_length="70"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="72" r_length="72" r_score="0.914"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="65690" i_stop="66849" i_length="1160">
            <donor d_prob="1.000" d_score="0.90"/>
            <acceptor a_prob="1.000" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="66850" g_stop="67021" g_length="172"/>
          <reference_exon_boundary r_type="cDNA" r_start="73" r_stop="245" r_length="173" r_score="0.983"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="67022" i_stop="67764" i_length="743">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="0.987" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="67765" g_stop="67995" g_length="231"/>
          <reference_exon_boundary r_type="cDNA" r_start="246" r_stop="476" r_length="231" r_score="0.987"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0236E02.1" gen_strand="+" ref_id="SGN-E416665" ref_strand="+">
        <total_alignment_score>0.975</total_alignment_score>
        <cumulative_length_of_scored_exons>473</cumulative_length_of_scored_exons>
        <coverage percentage="0.994" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0236E02.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E416665" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="65620" e_stop="65689"/>
          <exon e_start="66850" e_stop="67021"/>
          <exon e_start="67765" e_stop="67995"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCGTGTAGCTTCTACAGCAGCTCGTGCTATT-GCTTCACCTTCA-TCCTTAGTTTTTACCAGAGAACTTCAGGTAACTAGCCATTTCTCCTCAATAGCCACTTTTTGTTGCTTTTGTTTTATATGACCTAGTTTTCGCCCTTTGATGAATTATCGGAAACCGGCACGGATCAACTCCGATTTTTCGAGAATCAAGTGAGTTGGAGATTGGAACAGAGGAAACTAAAGGAATTTAACCGTGTAAAGGAAAAAATTAAACACACTGTATTTGGTGCTCTACCCCTCGTCTCTTCTTTTTGGCTTTCCCCGTACTCTACACACCAAATGAAATGGCTCGGATATGAAAGGACTAATAACTTTTCAGTTTTCATTACTGCGTCCTTTTTTAAGCTTTCAGTTTTAATTTGCGTGAATATACCTAATTTTTATTAGGGTAGAGTTATATGTTTCAAATTAAATTGCTACCAAGTTAAATTTAAGAATGTTACATAAATTTAGAGACGGCAAGTTTATATACCAAGAAGGGTACTCCTTCATCCACAGAGAAACGGTGTCCAGTTCGAGTATGGGCGTGAATCTAGATATAGTTAATTCCAATGCAGATATCAGACATCGAGTGAGGAAAAAAAAGATTTTATTAATTTGTTATTTTTAGGTTGCTTTTCCTTTAACTGAAAATCTAACCCGGCAGGACCACAACAGTTCTTTTCCGATCATTACTAATGATACTTGATTTTCACGTGCGATTTCTGATATTTTTATACGGAGTAGGTGAAGAGTGAAATGTTTCACGGGTCTCAAGGACAATGGCAGCAGTGCTTCATTTTTTTTTGCATCTTCACGTGCTATATTATTACTTTGTTTATACTAGTTCGACTTGGAAAATCTTTTCATATTCAGTTGTCTGGGGAATAAATAAGATATTTCTTATTTTTTGATTAAAAAAAGAAGAAGATATTTCTTATTTAAAGAAGTGACAAATTGTACTAACTCATTTACCATGCCTAATATATTATATGTGACAATGATGATTTTTTTTAACTATTAATTGTTAGTTTGGACAAAAATGATCAAAGCAAGTATATTGAATAATGCTTATTTCTTGCCAACTGGTGCATCTACGAGATTATAGGAGTTGGATTATAATTTTAGCACATCCAGCATGCTTATATGACCTTAAAATATTCATGTATATTCTGTCCACTCACCTTTTATTTCTTCATTATTTTACAGGCTTCCCCTGGCCCCAAAAAG-ATTGTGGGTGTTTTCTACAAAGCAAATGAATATGCTGAAATGAACCCCAACTTTTTGGGCTGTGCAGAAAATGCCTTGGGGATACGTGAATGGTTAGAGTCTAAAGGTCATCAGTACATAGTCACTCCTGACAAAGAAGGACCAGATTGTGGTTAGTTCCTGCTAATCTATAATCTCTCATGTTCTATCCATTATCCCACTGAAGCCTATGCATTTCTAAAGATAATTTCTTTACCCTTCATGCTTGTACAACTAAACACATCTTAAAAGGAGTATTTTTGCATTTAAAACATGCATATATGTGCTGAAGTTTTTTAAAAATATATGGCTCACGTGAGGAGAATATAACGGTCATAGCAGGAACATTTATTTAGATAAAGAGCAAAGCAAAGTAAACAATATTTGCTTTGTTAGTGTTGGTCCTTTGCTGCTAGTGAATTATGATCAGGACATTGTGAGGTAGTTTCTTGCAGGAGGGAAAAAAAGAGTGTATTTTACCTTGATATACAGGTGTGCATTTGCAAAACGTCTATACTTCAGGACTCAGGTGTAAGTTGTACTAGTTTGATAAGACTATGGCTAAATTTTGTAATTTAAACAAGGATTTATCAAAGTCGCAGGGGCTTGTTTAGTTGTTGAGTAGAGTGCACACATGGATGCTTTAGTGATTTTCTGATGGATGACATGCTTAGTGTAAATCCTTGCTTATTAGTATCTTTTATCATGAGAAAGAATGGTGCCCTAGTCTGACACACAAACTACTCTGTGTCTTAGTTTTTCACTGTTGAATCCTTTACTATGCTCTATGCAAAGAAATTTCTCCTGAGCTAAAGTTTTTGAGTGTGTCCATCTATAATAGCTTCTTTTTTTTTTCCCATGACTTTCTCTCTGCAGAGCTTGAGAAACACATTCCTGATCTCCATGTGTTGATTTCGACCCCTTTTCATCCTGCCTATGTCACGGCTGAAAGGATCAAGAAGGCAAAAAATCTACAACTTCTGCTGACAGCTGGAATTGGATCAGATCATGTTGATCTGAAAGCTGCTGCTGCTGCTGGATTGACAGTAGCAGAGGTCACTGGAAGCAATACTGTCTCAGTTGCGGAAGATGAACTGATGCGAATCT</genome_strand>
        <mrna_strand>TCGTGTAGCTTCTACAGCAGCTCGTGCTATTACCTTCACCTTCATTCCTTAGTTTTTACCAGAGAACTTCAG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCTTCCCCTGGCCCCAAAAAGAATTGTGGGTGTTTTCTACAAAGCAAATGAATATGCTGAAATGAACCCCAACTTTTTGGGCTGTGCAGAAAATGCCTTGGGGATACGTGAATGGTTAGAATCTAAAGGTCATCAGTACATAGTCACTCCTGACAAAGAAGGACCAGATTGTG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGCTTGAGAAACACATTCCTGATCTCCATGTGTTGATTTCGACCCCTTTTCATCCTGCCTATGTCACGGCTGAAAGGATCAAGAAGGCAAAAAATCTACAACTACTGCTGACAGCTGGAATTGGATCAGATCATGTTGATCTGAAAGCTGCTGCTGCTGCTGGATTGACAGTGGCAGAAGTCACTGGAAGCAATACTGTCTCAGTTGCGGAAGATGAACTGATGCGAATCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0236E02-u8qcS/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E265856" ref_strand="+" ref_description="SGN-E265856 [cLEI-11-O6]">
      <seq>gtagcttctacagcagctcgtgctattgcttcaccttcatccttagtttttaccagagaacttcaggcttcccctggccccaaaaagattgtgggtgttttctacaaagcaaatgaatatgctgaaatgaaccccaactttttgggctgtgcagaaaatgccttggggatacgtgaatggttagagtctaaaggtcatcagtacatagtcactcctgacaaagaaggaccagattgtgagcttgagaaacacattcctgatctccatgtgttgatttcgaccccttttcatcctgcctatgtcacggctgaaaggatcaagaaggcaaaaaatctacaacttctgctgacagctggaattggatcagatcatgttgatctgaaagctgctgctgctgctggattgacagtagcagaggtcactggaagcaatactgtctcagttgcggaagatgaactgatgcgaatcttaattcttgtccgaaatttcttacctggacattatcaggttatcaatggggagtggaatgttgctgcaattgcg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0236E02-u8qcS/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0236E02.1" temp_strand="+" temp_description="C02HBa0236E02.1  AC215430.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0236E02 sequenced_by:kribb upload_account_name:korea">
        <position start="65324" stop="68369"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="65624" g_stop="65689" g_length="66"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="66" r_length="66" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="65690" i_stop="66849" i_length="1160">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="66850" g_stop="67021" g_length="172"/>
          <reference_exon_boundary r_type="cDNA" r_start="67" r_stop="238" r_length="172" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="67022" i_stop="67764" i_length="743">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="0.987" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="67765" g_stop="68069" g_length="305"/>
          <reference_exon_boundary r_type="cDNA" r_start="239" r_stop="543" r_length="305" r_score="0.997"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0236E02.1" gen_strand="+" ref_id="SGN-E265856" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>543</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0236E02.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E265856" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="65624" e_stop="65689"/>
          <exon e_start="66850" e_stop="67021"/>
          <exon e_start="67765" e_stop="68069"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTAGCTTCTACAGCAGCTCGTGCTATTGCTTCACCTTCATCCTTAGTTTTTACCAGAGAACTTCAGGTAACTAGCCATTTCTCCTCAATAGCCACTTTTTGTTGCTTTTGTTTTATATGACCTAGTTTTCGCCCTTTGATGAATTATCGGAAACCGGCACGGATCAACTCCGATTTTTCGAGAATCAAGTGAGTTGGAGATTGGAACAGAGGAAACTAAAGGAATTTAACCGTGTAAAGGAAAAAATTAAACACACTGTATTTGGTGCTCTACCCCTCGTCTCTTCTTTTTGGCTTTCCCCGTACTCTACACACCAAATGAAATGGCTCGGATATGAAAGGACTAATAACTTTTCAGTTTTCATTACTGCGTCCTTTTTTAAGCTTTCAGTTTTAATTTGCGTGAATATACCTAATTTTTATTAGGGTAGAGTTATATGTTTCAAATTAAATTGCTACCAAGTTAAATTTAAGAATGTTACATAAATTTAGAGACGGCAAGTTTATATACCAAGAAGGGTACTCCTTCATCCACAGAGAAACGGTGTCCAGTTCGAGTATGGGCGTGAATCTAGATATAGTTAATTCCAATGCAGATATCAGACATCGAGTGAGGAAAAAAAAGATTTTATTAATTTGTTATTTTTAGGTTGCTTTTCCTTTAACTGAAAATCTAACCCGGCAGGACCACAACAGTTCTTTTCCGATCATTACTAATGATACTTGATTTTCACGTGCGATTTCTGATATTTTTATACGGAGTAGGTGAAGAGTGAAATGTTTCACGGGTCTCAAGGACAATGGCAGCAGTGCTTCATTTTTTTTTGCATCTTCACGTGCTATATTATTACTTTGTTTATACTAGTTCGACTTGGAAAATCTTTTCATATTCAGTTGTCTGGGGAATAAATAAGATATTTCTTATTTTTTGATTAAAAAAAGAAGAAGATATTTCTTATTTAAAGAAGTGACAAATTGTACTAACTCATTTACCATGCCTAATATATTATATGTGACAATGATGATTTTTTTTAACTATTAATTGTTAGTTTGGACAAAAATGATCAAAGCAAGTATATTGAATAATGCTTATTTCTTGCCAACTGGTGCATCTACGAGATTATAGGAGTTGGATTATAATTTTAGCACATCCAGCATGCTTATATGACCTTAAAATATTCATGTATATTCTGTCCACTCACCTTTTATTTCTTCATTATTTTACAGGCTTCCCCTGGCCCCAAAAAGATTGTGGGTGTTTTCTACAAAGCAAATGAATATGCTGAAATGAACCCCAACTTTTTGGGCTGTGCAGAAAATGCCTTGGGGATACGTGAATGGTTAGAGTCTAAAGGTCATCAGTACATAGTCACTCCTGACAAAGAAGGACCAGATTGTGGTTAGTTCCTGCTAATCTATAATCTCTCATGTTCTATCCATTATCCCACTGAAGCCTATGCATTTCTAAAGATAATTTCTTTACCCTTCATGCTTGTACAACTAAACACATCTTAAAAGGAGTATTTTTGCATTTAAAACATGCATATATGTGCTGAAGTTTTTTAAAAATATATGGCTCACGTGAGGAGAATATAACGGTCATAGCAGGAACATTTATTTAGATAAAGAGCAAAGCAAAGTAAACAATATTTGCTTTGTTAGTGTTGGTCCTTTGCTGCTAGTGAATTATGATCAGGACATTGTGAGGTAGTTTCTTGCAGGAGGGAAAAAAAGAGTGTATTTTACCTTGATATACAGGTGTGCATTTGCAAAACGTCTATACTTCAGGACTCAGGTGTAAGTTGTACTAGTTTGATAAGACTATGGCTAAATTTTGTAATTTAAACAAGGATTTATCAAAGTCGCAGGGGCTTGTTTAGTTGTTGAGTAGAGTGCACACATGGATGCTTTAGTGATTTTCTGATGGATGACATGCTTAGTGTAAATCCTTGCTTATTAGTATCTTTTATCATGAGAAAGAATGGTGCCCTAGTCTGACACACAAACTACTCTGTGTCTTAGTTTTTCACTGTTGAATCCTTTACTATGCTCTATGCAAAGAAATTTCTCCTGAGCTAAAGTTTTTGAGTGTGTCCATCTATAATAGCTTCTTTTTTTTTTCCCATGACTTTCTCTCTGCAGAGCTTGAGAAACACATTCCTGATCTCCATGTGTTGATTTCGACCCCTTTTCATCCTGCCTATGTCACGGCTGAAAGGATCAAGAAGGCAAAAAATCTACAACTTCTGCTGACAGCTGGAATTGGATCAGATCATGTTGATCTGAAAGCTGCTGCTGCTGCTGGATTGACAGTAGCAGAGGTCACTGGAAGCAATACTGTCTCAGTTGCGGAAGATGAACTGATGCGAATCTTAATTCTTGTCCGAAATTTCTTACCTGGACATCATCAGGTTATCAATGGGGAGTGGAATGTTGCTGCAATTGCG</genome_strand>
        <mrna_strand>GTAGCTTCTACAGCAGCTCGTGCTATTGCTTCACCTTCATCCTTAGTTTTTACCAGAGAACTTCAG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCTTCCCCTGGCCCCAAAAAGATTGTGGGTGTTTTCTACAAAGCAAATGAATATGCTGAAATGAACCCCAACTTTTTGGGCTGTGCAGAAAATGCCTTGGGGATACGTGAATGGTTAGAGTCTAAAGGTCATCAGTACATAGTCACTCCTGACAAAGAAGGACCAGATTGTG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGCTTGAGAAACACATTCCTGATCTCCATGTGTTGATTTCGACCCCTTTTCATCCTGCCTATGTCACGGCTGAAAGGATCAAGAAGGCAAAAAATCTACAACTTCTGCTGACAGCTGGAATTGGATCAGATCATGTTGATCTGAAAGCTGCTGCTGCTGCTGGATTGACAGTAGCAGAGGTCACTGGAAGCAATACTGTCTCAGTTGCGGAAGATGAACTGATGCGAATCTTAATTCTTGTCCGAAATTTCTTACCTGGACATTATCAGGTTATCAATGGGGAGTGGAATGTTGCTGCAATTGCG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0236E02-u8qcS/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E560479" ref_strand="+" ref_description="SGN-E560479 [20139]">
      <seq>gtagcttctacagcagctcgtgctattacttcaccttcatccttagtttttaccagagaacttcaggcttcccctggccccaaaaagattgtgggtgttttctacaaagcaaatgaatatgctgaaatgaaccccaactttttgggctgtgcagaaaatgccttggggatacgtgaatggttagaatctaaaggtcatcagtacatagtcactcctgacaaagaaggaccagattgtgagcttgagaaacacattcctgatctccatgtgttgatttcgaccccttttcatcctgcctatgtcacggctgaaaggatcaagaaggcaaaaaatctacaactactgctgacagctggaattggatcagatcatgttgatctgaaagctgctgctgctgctgga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0236E02-u8qcS/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0236E02.1" temp_strand="+" temp_description="C02HBa0236E02.1  AC215430.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0236E02 sequenced_by:kribb upload_account_name:korea">
        <position start="65324" stop="68228"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="65624" g_stop="65689" g_length="66"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="66" r_length="66" r_score="0.985"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="65690" i_stop="66849" i_length="1160">
            <donor d_prob="1.000" d_score="0.98"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="66850" g_stop="67021" g_length="172"/>
          <reference_exon_boundary r_type="cDNA" r_start="67" r_stop="238" r_length="172" r_score="0.994"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="67022" i_stop="67764" i_length="743">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="0.987" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="67765" g_stop="67928" g_length="164"/>
          <reference_exon_boundary r_type="cDNA" r_start="239" r_stop="402" r_length="164" r_score="0.994"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0236E02.1" gen_strand="+" ref_id="SGN-E560479" ref_strand="+">
        <total_alignment_score>0.993</total_alignment_score>
        <cumulative_length_of_scored_exons>402</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0236E02.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E560479" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="65624" e_stop="65689"/>
          <exon e_start="66850" e_stop="67021"/>
          <exon e_start="67765" e_stop="67928"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTAGCTTCTACAGCAGCTCGTGCTATTGCTTCACCTTCATCCTTAGTTTTTACCAGAGAACTTCAGGTAACTAGCCATTTCTCCTCAATAGCCACTTTTTGTTGCTTTTGTTTTATATGACCTAGTTTTCGCCCTTTGATGAATTATCGGAAACCGGCACGGATCAACTCCGATTTTTCGAGAATCAAGTGAGTTGGAGATTGGAACAGAGGAAACTAAAGGAATTTAACCGTGTAAAGGAAAAAATTAAACACACTGTATTTGGTGCTCTACCCCTCGTCTCTTCTTTTTGGCTTTCCCCGTACTCTACACACCAAATGAAATGGCTCGGATATGAAAGGACTAATAACTTTTCAGTTTTCATTACTGCGTCCTTTTTTAAGCTTTCAGTTTTAATTTGCGTGAATATACCTAATTTTTATTAGGGTAGAGTTATATGTTTCAAATTAAATTGCTACCAAGTTAAATTTAAGAATGTTACATAAATTTAGAGACGGCAAGTTTATATACCAAGAAGGGTACTCCTTCATCCACAGAGAAACGGTGTCCAGTTCGAGTATGGGCGTGAATCTAGATATAGTTAATTCCAATGCAGATATCAGACATCGAGTGAGGAAAAAAAAGATTTTATTAATTTGTTATTTTTAGGTTGCTTTTCCTTTAACTGAAAATCTAACCCGGCAGGACCACAACAGTTCTTTTCCGATCATTACTAATGATACTTGATTTTCACGTGCGATTTCTGATATTTTTATACGGAGTAGGTGAAGAGTGAAATGTTTCACGGGTCTCAAGGACAATGGCAGCAGTGCTTCATTTTTTTTTGCATCTTCACGTGCTATATTATTACTTTGTTTATACTAGTTCGACTTGGAAAATCTTTTCATATTCAGTTGTCTGGGGAATAAATAAGATATTTCTTATTTTTTGATTAAAAAAAGAAGAAGATATTTCTTATTTAAAGAAGTGACAAATTGTACTAACTCATTTACCATGCCTAATATATTATATGTGACAATGATGATTTTTTTTAACTATTAATTGTTAGTTTGGACAAAAATGATCAAAGCAAGTATATTGAATAATGCTTATTTCTTGCCAACTGGTGCATCTACGAGATTATAGGAGTTGGATTATAATTTTAGCACATCCAGCATGCTTATATGACCTTAAAATATTCATGTATATTCTGTCCACTCACCTTTTATTTCTTCATTATTTTACAGGCTTCCCCTGGCCCCAAAAAGATTGTGGGTGTTTTCTACAAAGCAAATGAATATGCTGAAATGAACCCCAACTTTTTGGGCTGTGCAGAAAATGCCTTGGGGATACGTGAATGGTTAGAGTCTAAAGGTCATCAGTACATAGTCACTCCTGACAAAGAAGGACCAGATTGTGGTTAGTTCCTGCTAATCTATAATCTCTCATGTTCTATCCATTATCCCACTGAAGCCTATGCATTTCTAAAGATAATTTCTTTACCCTTCATGCTTGTACAACTAAACACATCTTAAAAGGAGTATTTTTGCATTTAAAACATGCATATATGTGCTGAAGTTTTTTAAAAATATATGGCTCACGTGAGGAGAATATAACGGTCATAGCAGGAACATTTATTTAGATAAAGAGCAAAGCAAAGTAAACAATATTTGCTTTGTTAGTGTTGGTCCTTTGCTGCTAGTGAATTATGATCAGGACATTGTGAGGTAGTTTCTTGCAGGAGGGAAAAAAAGAGTGTATTTTACCTTGATATACAGGTGTGCATTTGCAAAACGTCTATACTTCAGGACTCAGGTGTAAGTTGTACTAGTTTGATAAGACTATGGCTAAATTTTGTAATTTAAACAAGGATTTATCAAAGTCGCAGGGGCTTGTTTAGTTGTTGAGTAGAGTGCACACATGGATGCTTTAGTGATTTTCTGATGGATGACATGCTTAGTGTAAATCCTTGCTTATTAGTATCTTTTATCATGAGAAAGAATGGTGCCCTAGTCTGACACACAAACTACTCTGTGTCTTAGTTTTTCACTGTTGAATCCTTTACTATGCTCTATGCAAAGAAATTTCTCCTGAGCTAAAGTTTTTGAGTGTGTCCATCTATAATAGCTTCTTTTTTTTTTCCCATGACTTTCTCTCTGCAGAGCTTGAGAAACACATTCCTGATCTCCATGTGTTGATTTCGACCCCTTTTCATCCTGCCTATGTCACGGCTGAAAGGATCAAGAAGGCAAAAAATCTACAACTTCTGCTGACAGCTGGAATTGGATCAGATCATGTTGATCTGAAAGCTGCTGCTGCTGCTGGA</genome_strand>
        <mrna_strand>GTAGCTTCTACAGCAGCTCGTGCTATTACTTCACCTTCATCCTTAGTTTTTACCAGAGAACTTCAG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCTTCCCCTGGCCCCAAAAAGATTGTGGGTGTTTTCTACAAAGCAAATGAATATGCTGAAATGAACCCCAACTTTTTGGGCTGTGCAGAAAATGCCTTGGGGATACGTGAATGGTTAGAATCTAAAGGTCATCAGTACATAGTCACTCCTGACAAAGAAGGACCAGATTGTG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGCTTGAGAAACACATTCCTGATCTCCATGTGTTGATTTCGACCCCTTTTCATCCTGCCTATGTCACGGCTGAAAGGATCAAGAAGGCAAAAAATCTACAACTACTGCTGACAGCTGGAATTGGATCAGATCATGTTGATCTGAAAGCTGCTGCTGCTGCTGGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0236E02-u8qcS/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E212938" ref_strand="+" ref_description="SGN-E212938 [cLEC-73-N14]">
      <seq>agcttctacagcagctcgtgctattgcttcaccttcatccttagtttttaccagagaacttcaggcttcccctggccccaaaaagattgtgggtgttttctacaaagcaaatgaatatgctgaaatgaaccccaactttttgggctgtgcagaaaatgccttggggatacgtgaatggttagagtctaaaggtcatcagtacatagtcactcctgacaaagaaggaccagattgtgagcttgagaaacacattcctgatctccatgtgttgatttcgaccccttttcatcctgcctatgtcacggctgaaaggatcaagaaggcaaaaaatctacaacttctgctgacagctggaattggatcagatcatgttgatctgaaagctgctgctgctgctggattgacagtagcagaggtcactggaagcaatactgtctcagttgcggaagatgaactgatgcgaatcttaattcttgtccgaaatttcttacctggacatcatcaggttatcaatggggagtggaatgttgctgcaattgcgcacagagcttatgatttgga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0236E02-u8qcS/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0236E02.1" temp_strand="+" temp_description="C02HBa0236E02.1  AC215430.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0236E02 sequenced_by:kribb upload_account_name:korea">
        <position start="65326" stop="68389"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="65626" g_stop="65689" g_length="64"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="64" r_length="64" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="65690" i_stop="66849" i_length="1160">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="66850" g_stop="67021" g_length="172"/>
          <reference_exon_boundary r_type="cDNA" r_start="65" r_stop="236" r_length="172" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="67022" i_stop="67764" i_length="743">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="0.987" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="67765" g_stop="68089" g_length="325"/>
          <reference_exon_boundary r_type="cDNA" r_start="237" r_stop="561" r_length="325" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0236E02.1" gen_strand="+" ref_id="SGN-E212938" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>561</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0236E02.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E212938" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="65626" e_stop="65689"/>
          <exon e_start="66850" e_stop="67021"/>
          <exon e_start="67765" e_stop="68089"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGCTTCTACAGCAGCTCGTGCTATTGCTTCACCTTCATCCTTAGTTTTTACCAGAGAACTTCAGGTAACTAGCCATTTCTCCTCAATAGCCACTTTTTGTTGCTTTTGTTTTATATGACCTAGTTTTCGCCCTTTGATGAATTATCGGAAACCGGCACGGATCAACTCCGATTTTTCGAGAATCAAGTGAGTTGGAGATTGGAACAGAGGAAACTAAAGGAATTTAACCGTGTAAAGGAAAAAATTAAACACACTGTATTTGGTGCTCTACCCCTCGTCTCTTCTTTTTGGCTTTCCCCGTACTCTACACACCAAATGAAATGGCTCGGATATGAAAGGACTAATAACTTTTCAGTTTTCATTACTGCGTCCTTTTTTAAGCTTTCAGTTTTAATTTGCGTGAATATACCTAATTTTTATTAGGGTAGAGTTATATGTTTCAAATTAAATTGCTACCAAGTTAAATTTAAGAATGTTACATAAATTTAGAGACGGCAAGTTTATATACCAAGAAGGGTACTCCTTCATCCACAGAGAAACGGTGTCCAGTTCGAGTATGGGCGTGAATCTAGATATAGTTAATTCCAATGCAGATATCAGACATCGAGTGAGGAAAAAAAAGATTTTATTAATTTGTTATTTTTAGGTTGCTTTTCCTTTAACTGAAAATCTAACCCGGCAGGACCACAACAGTTCTTTTCCGATCATTACTAATGATACTTGATTTTCACGTGCGATTTCTGATATTTTTATACGGAGTAGGTGAAGAGTGAAATGTTTCACGGGTCTCAAGGACAATGGCAGCAGTGCTTCATTTTTTTTTGCATCTTCACGTGCTATATTATTACTTTGTTTATACTAGTTCGACTTGGAAAATCTTTTCATATTCAGTTGTCTGGGGAATAAATAAGATATTTCTTATTTTTTGATTAAAAAAAGAAGAAGATATTTCTTATTTAAAGAAGTGACAAATTGTACTAACTCATTTACCATGCCTAATATATTATATGTGACAATGATGATTTTTTTTAACTATTAATTGTTAGTTTGGACAAAAATGATCAAAGCAAGTATATTGAATAATGCTTATTTCTTGCCAACTGGTGCATCTACGAGATTATAGGAGTTGGATTATAATTTTAGCACATCCAGCATGCTTATATGACCTTAAAATATTCATGTATATTCTGTCCACTCACCTTTTATTTCTTCATTATTTTACAGGCTTCCCCTGGCCCCAAAAAGATTGTGGGTGTTTTCTACAAAGCAAATGAATATGCTGAAATGAACCCCAACTTTTTGGGCTGTGCAGAAAATGCCTTGGGGATACGTGAATGGTTAGAGTCTAAAGGTCATCAGTACATAGTCACTCCTGACAAAGAAGGACCAGATTGTGGTTAGTTCCTGCTAATCTATAATCTCTCATGTTCTATCCATTATCCCACTGAAGCCTATGCATTTCTAAAGATAATTTCTTTACCCTTCATGCTTGTACAACTAAACACATCTTAAAAGGAGTATTTTTGCATTTAAAACATGCATATATGTGCTGAAGTTTTTTAAAAATATATGGCTCACGTGAGGAGAATATAACGGTCATAGCAGGAACATTTATTTAGATAAAGAGCAAAGCAAAGTAAACAATATTTGCTTTGTTAGTGTTGGTCCTTTGCTGCTAGTGAATTATGATCAGGACATTGTGAGGTAGTTTCTTGCAGGAGGGAAAAAAAGAGTGTATTTTACCTTGATATACAGGTGTGCATTTGCAAAACGTCTATACTTCAGGACTCAGGTGTAAGTTGTACTAGTTTGATAAGACTATGGCTAAATTTTGTAATTTAAACAAGGATTTATCAAAGTCGCAGGGGCTTGTTTAGTTGTTGAGTAGAGTGCACACATGGATGCTTTAGTGATTTTCTGATGGATGACATGCTTAGTGTAAATCCTTGCTTATTAGTATCTTTTATCATGAGAAAGAATGGTGCCCTAGTCTGACACACAAACTACTCTGTGTCTTAGTTTTTCACTGTTGAATCCTTTACTATGCTCTATGCAAAGAAATTTCTCCTGAGCTAAAGTTTTTGAGTGTGTCCATCTATAATAGCTTCTTTTTTTTTTCCCATGACTTTCTCTCTGCAGAGCTTGAGAAACACATTCCTGATCTCCATGTGTTGATTTCGACCCCTTTTCATCCTGCCTATGTCACGGCTGAAAGGATCAAGAAGGCAAAAAATCTACAACTTCTGCTGACAGCTGGAATTGGATCAGATCATGTTGATCTGAAAGCTGCTGCTGCTGCTGGATTGACAGTAGCAGAGGTCACTGGAAGCAATACTGTCTCAGTTGCGGAAGATGAACTGATGCGAATCTTAATTCTTGTCCGAAATTTCTTACCTGGACATCATCAGGTTATCAATGGGGAGTGGAATGTTGCTGCAATTGCGCACAGAGCTTATGATTTGGA</genome_strand>
        <mrna_strand>AGCTTCTACAGCAGCTCGTGCTATTGCTTCACCTTCATCCTTAGTTTTTACCAGAGAACTTCAG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCTTCCCCTGGCCCCAAAAAGATTGTGGGTGTTTTCTACAAAGCAAATGAATATGCTGAAATGAACCCCAACTTTTTGGGCTGTGCAGAAAATGCCTTGGGGATACGTGAATGGTTAGAGTCTAAAGGTCATCAGTACATAGTCACTCCTGACAAAGAAGGACCAGATTGTG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGCTTGAGAAACACATTCCTGATCTCCATGTGTTGATTTCGACCCCTTTTCATCCTGCCTATGTCACGGCTGAAAGGATCAAGAAGGCAAAAAATCTACAACTTCTGCTGACAGCTGGAATTGGATCAGATCATGTTGATCTGAAAGCTGCTGCTGCTGCTGGATTGACAGTAGCAGAGGTCACTGGAAGCAATACTGTCTCAGTTGCGGAAGATGAACTGATGCGAATCTTAATTCTTGTCCGAAATTTCTTACCTGGACATCATCAGGTTATCAATGGGGAGTGGAATGTTGCTGCAATTGCGCACAGAGCTTATGATTTGGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0236E02-u8qcS/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E454894" ref_strand="+" ref_description="SGN-E454894 [cSTS-24-P3]">
      <seq>ctacagcagctcgtgctattacttcaccttcatccttagtttttaccagagaacttcaggcttcccctggccccaaaaagattgtgggtgttttctacaaagcaaatgaatatgctgaaatgaaccccaactttttgggctgtgcagaaaatgccttggggatacgtgaatggttagaatctaaaggtcatcagtacatagtcactcctgacaaagaaggaccggattgtgagcttgagaaacacattcctgatctccatgtgttgatttcgaccccttttcatcctgcctatgtcacggctgaaaggatcaagaaggcaaaaaatctacaactactgctgacagctggaattggatcagatcatgttgatctgaaagctgctgctgctgctggattgacagtagcagaggtcactggaagcaatactgtctcagttgcggaagatgaactgatgcgaatcttaattcttgtccgaaatttcttgcctggacatcatcaggttatcaatggggagtggaatgttgctgcaattgcgcacagagcttatgatttggaaggcaagactgttggaactgttggtgcangacgtattggcagacttttactccaacgattgaagccatttaactgtaatctactttaccatgaccgtcttaagatggattctgagctagagaatcaaattgg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0236E02-u8qcS/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0236E02.1" temp_strand="+" temp_description="C02HBa0236E02.1  AC215430.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0236E02 sequenced_by:kribb upload_account_name:korea">
        <position start="65331" stop="68521"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="65631" g_stop="65689" g_length="59"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="59" r_length="59" r_score="0.983"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="65690" i_stop="66849" i_length="1160">
            <donor d_prob="1.000" d_score="0.98"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="66850" g_stop="67021" g_length="172"/>
          <reference_exon_boundary r_type="cDNA" r_start="60" r_stop="231" r_length="172" r_score="0.988"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="67022" i_stop="67764" i_length="743">
            <donor d_prob="0.994" d_score="0.98"/>
            <acceptor a_prob="0.987" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="67765" g_stop="68221" g_length="457"/>
          <reference_exon_boundary r_type="cDNA" r_start="232" r_stop="688" r_length="457" r_score="0.991"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0236E02.1" gen_strand="+" ref_id="SGN-E454894" ref_strand="+">
        <total_alignment_score>0.990</total_alignment_score>
        <cumulative_length_of_scored_exons>688</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0236E02.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E454894" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="65631" e_stop="65689"/>
          <exon e_start="66850" e_stop="67021"/>
          <exon e_start="67765" e_stop="68221"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTACAGCAGCTCGTGCTATTGCTTCACCTTCATCCTTAGTTTTTACCAGAGAACTTCAGGTAACTAGCCATTTCTCCTCAATAGCCACTTTTTGTTGCTTTTGTTTTATATGACCTAGTTTTCGCCCTTTGATGAATTATCGGAAACCGGCACGGATCAACTCCGATTTTTCGAGAATCAAGTGAGTTGGAGATTGGAACAGAGGAAACTAAAGGAATTTAACCGTGTAAAGGAAAAAATTAAACACACTGTATTTGGTGCTCTACCCCTCGTCTCTTCTTTTTGGCTTTCCCCGTACTCTACACACCAAATGAAATGGCTCGGATATGAAAGGACTAATAACTTTTCAGTTTTCATTACTGCGTCCTTTTTTAAGCTTTCAGTTTTAATTTGCGTGAATATACCTAATTTTTATTAGGGTAGAGTTATATGTTTCAAATTAAATTGCTACCAAGTTAAATTTAAGAATGTTACATAAATTTAGAGACGGCAAGTTTATATACCAAGAAGGGTACTCCTTCATCCACAGAGAAACGGTGTCCAGTTCGAGTATGGGCGTGAATCTAGATATAGTTAATTCCAATGCAGATATCAGACATCGAGTGAGGAAAAAAAAGATTTTATTAATTTGTTATTTTTAGGTTGCTTTTCCTTTAACTGAAAATCTAACCCGGCAGGACCACAACAGTTCTTTTCCGATCATTACTAATGATACTTGATTTTCACGTGCGATTTCTGATATTTTTATACGGAGTAGGTGAAGAGTGAAATGTTTCACGGGTCTCAAGGACAATGGCAGCAGTGCTTCATTTTTTTTTGCATCTTCACGTGCTATATTATTACTTTGTTTATACTAGTTCGACTTGGAAAATCTTTTCATATTCAGTTGTCTGGGGAATAAATAAGATATTTCTTATTTTTTGATTAAAAAAAGAAGAAGATATTTCTTATTTAAAGAAGTGACAAATTGTACTAACTCATTTACCATGCCTAATATATTATATGTGACAATGATGATTTTTTTTAACTATTAATTGTTAGTTTGGACAAAAATGATCAAAGCAAGTATATTGAATAATGCTTATTTCTTGCCAACTGGTGCATCTACGAGATTATAGGAGTTGGATTATAATTTTAGCACATCCAGCATGCTTATATGACCTTAAAATATTCATGTATATTCTGTCCACTCACCTTTTATTTCTTCATTATTTTACAGGCTTCCCCTGGCCCCAAAAAGATTGTGGGTGTTTTCTACAAAGCAAATGAATATGCTGAAATGAACCCCAACTTTTTGGGCTGTGCAGAAAATGCCTTGGGGATACGTGAATGGTTAGAGTCTAAAGGTCATCAGTACATAGTCACTCCTGACAAAGAAGGACCAGATTGTGGTTAGTTCCTGCTAATCTATAATCTCTCATGTTCTATCCATTATCCCACTGAAGCCTATGCATTTCTAAAGATAATTTCTTTACCCTTCATGCTTGTACAACTAAACACATCTTAAAAGGAGTATTTTTGCATTTAAAACATGCATATATGTGCTGAAGTTTTTTAAAAATATATGGCTCACGTGAGGAGAATATAACGGTCATAGCAGGAACATTTATTTAGATAAAGAGCAAAGCAAAGTAAACAATATTTGCTTTGTTAGTGTTGGTCCTTTGCTGCTAGTGAATTATGATCAGGACATTGTGAGGTAGTTTCTTGCAGGAGGGAAAAAAAGAGTGTATTTTACCTTGATATACAGGTGTGCATTTGCAAAACGTCTATACTTCAGGACTCAGGTGTAAGTTGTACTAGTTTGATAAGACTATGGCTAAATTTTGTAATTTAAACAAGGATTTATCAAAGTCGCAGGGGCTTGTTTAGTTGTTGAGTAGAGTGCACACATGGATGCTTTAGTGATTTTCTGATGGATGACATGCTTAGTGTAAATCCTTGCTTATTAGTATCTTTTATCATGAGAAAGAATGGTGCCCTAGTCTGACACACAAACTACTCTGTGTCTTAGTTTTTCACTGTTGAATCCTTTACTATGCTCTATGCAAAGAAATTTCTCCTGAGCTAAAGTTTTTGAGTGTGTCCATCTATAATAGCTTCTTTTTTTTTTCCCATGACTTTCTCTCTGCAGAGCTTGAGAAACACATTCCTGATCTCCATGTGTTGATTTCGACCCCTTTTCATCCTGCCTATGTCACGGCTGAAAGGATCAAGAAGGCAAAAAATCTACAACTTCTGCTGACAGCTGGAATTGGATCAGATCATGTTGATCTGAAAGCTGCTGCTGCTGCTGGATTGACAGTAGCAGAGGTCACTGGAAGCAATACTGTCTCAGTTGCGGAAGATGAACTGATGCGAATCTTAATTCTTGTCCGAAATTTCTTACCTGGACATCATCAGGTTATCAATGGGGAGTGGAATGTTGCTGCAATTGCGCACAGAGCTTATGATTTGGAAGGCAAGACTGTTGGAACTGTTGGTGCAGGACGTATTGGCAGACTTTTACTCCAGCGATTGAAGCCATTTAACTGTAATCTACTTTACCATGACCGTCTTAAGATGGATTCTGAGCTAGAGAATCAAATTGG</genome_strand>
        <mrna_strand>CTACAGCAGCTCGTGCTATTACTTCACCTTCATCCTTAGTTTTTACCAGAGAACTTCAG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCTTCCCCTGGCCCCAAAAAGATTGTGGGTGTTTTCTACAAAGCAAATGAATATGCTGAAATGAACCCCAACTTTTTGGGCTGTGCAGAAAATGCCTTGGGGATACGTGAATGGTTAGAATCTAAAGGTCATCAGTACATAGTCACTCCTGACAAAGAAGGACCGGATTGTG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGCTTGAGAAACACATTCCTGATCTCCATGTGTTGATTTCGACCCCTTTTCATCCTGCCTATGTCACGGCTGAAAGGATCAAGAAGGCAAAAAATCTACAACTACTGCTGACAGCTGGAATTGGATCAGATCATGTTGATCTGAAAGCTGCTGCTGCTGCTGGATTGACAGTAGCAGAGGTCACTGGAAGCAATACTGTCTCAGTTGCGGAAGATGAACTGATGCGAATCTTAATTCTTGTCCGAAATTTCTTGCCTGGACATCATCAGGTTATCAATGGGGAGTGGAATGTTGCTGCAATTGCGCACAGAGCTTATGATTTGGAAGGCAAGACTGTTGGAACTGTTGGTGCANGACGTATTGGCAGACTTTTACTCCAACGATTGAAGCCATTTAACTGTAATCTACTTTACCATGACCGTCTTAAGATGGATTCTGAGCTAGAGAATCAAATTGG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0236E02-u8qcS/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E599621" ref_strand="+" ref_description="SGN-E599621 [52613]">
      <seq>acagcagctcgtgctattgcttcaccttcatccttagtttttaccagagaacttcaggcttcccctggccccaaaaagattgtgggtgttttctacaaagcaaatgaatatgctgaaatgaaccccaactttttgggctgtgcagaaaatgccttggggatacgtgaatggttagaatctaaaggtcatcagtacatagtcactcctgacaaagaaggaccagattgtgagcttgagaaacacattcctgatctccatgtgttgatttcgaccccttttcatcctgcctatgtcacggctgaaaggatcaagaaggcaaaaaatctacaacttctgctgacagctggaattggatcagatcatgttgatctgaaagctgctgctgctgctggattgacagtagcagaggtcactggaagcaatactgtctcagttgctgaagatgaactgatgcgaatcttaattcttgtccgaaatttcttgcctggacatcatcaggttatcaatggggagtggaatgttgctgcaattgcgcacagagcttatgatttggaaggcaagactgttggaactgttggtgcaggacgtattggcagacttttactccaacgattgaagccatttaactgtaatctactttaccatgaccgtcttaagatggattctgagctagagaatcaaattggagccaagttttgagggaaagatctcgataagatgctctcgaaattgtgacatagtggtcatcaataca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0236E02-u8qcS/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0236E02.1" temp_strand="+" temp_description="C02HBa0236E02.1  AC215430.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0236E02 sequenced_by:kribb upload_account_name:korea">
        <position start="65333" stop="68584"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="65633" g_stop="65689" g_length="57"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="57" r_length="57" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="65690" i_stop="66849" i_length="1160">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="66850" g_stop="67021" g_length="172"/>
          <reference_exon_boundary r_type="cDNA" r_start="58" r_stop="229" r_length="172" r_score="0.994"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="67022" i_stop="67764" i_length="743">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="0.987" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="67765" g_stop="68285" g_length="521"/>
          <reference_exon_boundary r_type="cDNA" r_start="230" r_stop="754" r_length="525" r_score="0.975"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0236E02.1" gen_strand="+" ref_id="SGN-E599621" ref_strand="+">
        <total_alignment_score>0.981</total_alignment_score>
        <cumulative_length_of_scored_exons>750</cumulative_length_of_scored_exons>
        <coverage percentage="0.995" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0236E02.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E599621" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="65633" e_stop="65689"/>
          <exon e_start="66850" e_stop="67021"/>
          <exon e_start="67765" e_stop="68285"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACAGCAGCTCGTGCTATTGCTTCACCTTCATCCTTAGTTTTTACCAGAGAACTTCAGGTAACTAGCCATTTCTCCTCAATAGCCACTTTTTGTTGCTTTTGTTTTATATGACCTAGTTTTCGCCCTTTGATGAATTATCGGAAACCGGCACGGATCAACTCCGATTTTTCGAGAATCAAGTGAGTTGGAGATTGGAACAGAGGAAACTAAAGGAATTTAACCGTGTAAAGGAAAAAATTAAACACACTGTATTTGGTGCTCTACCCCTCGTCTCTTCTTTTTGGCTTTCCCCGTACTCTACACACCAAATGAAATGGCTCGGATATGAAAGGACTAATAACTTTTCAGTTTTCATTACTGCGTCCTTTTTTAAGCTTTCAGTTTTAATTTGCGTGAATATACCTAATTTTTATTAGGGTAGAGTTATATGTTTCAAATTAAATTGCTACCAAGTTAAATTTAAGAATGTTACATAAATTTAGAGACGGCAAGTTTATATACCAAGAAGGGTACTCCTTCATCCACAGAGAAACGGTGTCCAGTTCGAGTATGGGCGTGAATCTAGATATAGTTAATTCCAATGCAGATATCAGACATCGAGTGAGGAAAAAAAAGATTTTATTAATTTGTTATTTTTAGGTTGCTTTTCCTTTAACTGAAAATCTAACCCGGCAGGACCACAACAGTTCTTTTCCGATCATTACTAATGATACTTGATTTTCACGTGCGATTTCTGATATTTTTATACGGAGTAGGTGAAGAGTGAAATGTTTCACGGGTCTCAAGGACAATGGCAGCAGTGCTTCATTTTTTTTTGCATCTTCACGTGCTATATTATTACTTTGTTTATACTAGTTCGACTTGGAAAATCTTTTCATATTCAGTTGTCTGGGGAATAAATAAGATATTTCTTATTTTTTGATTAAAAAAAGAAGAAGATATTTCTTATTTAAAGAAGTGACAAATTGTACTAACTCATTTACCATGCCTAATATATTATATGTGACAATGATGATTTTTTTTAACTATTAATTGTTAGTTTGGACAAAAATGATCAAAGCAAGTATATTGAATAATGCTTATTTCTTGCCAACTGGTGCATCTACGAGATTATAGGAGTTGGATTATAATTTTAGCACATCCAGCATGCTTATATGACCTTAAAATATTCATGTATATTCTGTCCACTCACCTTTTATTTCTTCATTATTTTACAGGCTTCCCCTGGCCCCAAAAAGATTGTGGGTGTTTTCTACAAAGCAAATGAATATGCTGAAATGAACCCCAACTTTTTGGGCTGTGCAGAAAATGCCTTGGGGATACGTGAATGGTTAGAGTCTAAAGGTCATCAGTACATAGTCACTCCTGACAAAGAAGGACCAGATTGTGGTTAGTTCCTGCTAATCTATAATCTCTCATGTTCTATCCATTATCCCACTGAAGCCTATGCATTTCTAAAGATAATTTCTTTACCCTTCATGCTTGTACAACTAAACACATCTTAAAAGGAGTATTTTTGCATTTAAAACATGCATATATGTGCTGAAGTTTTTTAAAAATATATGGCTCACGTGAGGAGAATATAACGGTCATAGCAGGAACATTTATTTAGATAAAGAGCAAAGCAAAGTAAACAATATTTGCTTTGTTAGTGTTGGTCCTTTGCTGCTAGTGAATTATGATCAGGACATTGTGAGGTAGTTTCTTGCAGGAGGGAAAAAAAGAGTGTATTTTACCTTGATATACAGGTGTGCATTTGCAAAACGTCTATACTTCAGGACTCAGGTGTAAGTTGTACTAGTTTGATAAGACTATGGCTAAATTTTGTAATTTAAACAAGGATTTATCAAAGTCGCAGGGGCTTGTTTAGTTGTTGAGTAGAGTGCACACATGGATGCTTTAGTGATTTTCTGATGGATGACATGCTTAGTGTAAATCCTTGCTTATTAGTATCTTTTATCATGAGAAAGAATGGTGCCCTAGTCTGACACACAAACTACTCTGTGTCTTAGTTTTTCACTGTTGAATCCTTTACTATGCTCTATGCAAAGAAATTTCTCCTGAGCTAAAGTTTTTGAGTGTGTCCATCTATAATAGCTTCTTTTTTTTTTCCCATGACTTTCTCTCTGCAGAGCTTGAGAAACACATTCCTGATCTCCATGTGTTGATTTCGACCCCTTTTCATCCTGCCTATGTCACGGCTGAAAGGATCAAGAAGGCAAAAAATCTACAACTTCTGCTGACAGCTGGAATTGGATCAGATCATGTTGATCTGAAAGCTGCTGCTGCTGCTGGATTGACAGTAGCAGAGGTCACTGGAAGCAATACTGTCTCAGTTGCGGAAGATGAACTGATGCGAATCTTAATTCTTGTCCGAAATTTCTTACCTGGACATCATCAGGTTATCAATGGGGAGTGGAATGTTGCTGCAATTGCGCACAGAGCTTATGATTTGGAAGGCAAGACTGTTGGAACTGTTGGTGCAGGACGTATTGGCAGACTTTTACTCCAGCGATTGAAGCCATTTAACTGTAATCTACTTTACCATGACCGTCTTAAGATGGATTCTGAGCTAGAGAATCAAATTGGAGCAAAG-TTTGA-GG-AAGATCTCGATAAGATGCTCTCGAAA-TGTGACATAGTGGTCATCAATACG</genome_strand>
        <mrna_strand>ACAGCAGCTCGTGCTATTGCTTCACCTTCATCCTTAGTTTTTACCAGAGAACTTCAG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCTTCCCCTGGCCCCAAAAAGATTGTGGGTGTTTTCTACAAAGCAAATGAATATGCTGAAATGAACCCCAACTTTTTGGGCTGTGCAGAAAATGCCTTGGGGATACGTGAATGGTTAGAATCTAAAGGTCATCAGTACATAGTCACTCCTGACAAAGAAGGACCAGATTGTG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGCTTGAGAAACACATTCCTGATCTCCATGTGTTGATTTCGACCCCTTTTCATCCTGCCTATGTCACGGCTGAAAGGATCAAGAAGGCAAAAAATCTACAACTTCTGCTGACAGCTGGAATTGGATCAGATCATGTTGATCTGAAAGCTGCTGCTGCTGCTGGATTGACAGTAGCAGAGGTCACTGGAAGCAATACTGTCTCAGTTGCTGAAGATGAACTGATGCGAATCTTAATTCTTGTCCGAAATTTCTTGCCTGGACATCATCAGGTTATCAATGGGGAGTGGAATGTTGCTGCAATTGCGCACAGAGCTTATGATTTGGAAGGCAAGACTGTTGGAACTGTTGGTGCAGGACGTATTGGCAGACTTTTACTCCAACGATTGAAGCCATTTAACTGTAATCTACTTTACCATGACCGTCTTAAGATGGATTCTGAGCTAGAGAATCAAATTGGAGCCAAGTTTTGAGGGAAAGATCTCGATAAGATGCTCTCGAAATTGTGACATAGTGGTCATCAATACA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0236E02-u8qcS/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E481246" ref_strand="+" ref_description="SGN-E481246 [cSTD-17-D15]">
      <seq>agcagctcgtgctattacttcaccttcatccttagtttttaccagagaacttcaggcttcccctggccccaaaaagattgtgggtgttttctacaaagcaaatgaatatgctgaaatgaaccccaactttttgggctgtgcagaaaatgccttggggatacgtgaatggttagaatctaaaggtcatcagtacatagtcactcctgacaaagaaggaccagattgtgagcttgagaaacacattcctgatctccatgtgttgatttcgaccccttttcatcctgcctatgtcacggctgaaaggatcaagaaggcaaaaaatctacaactactgctgacagctggaattggatcagatcatgttgatctgaaagctgctgctgctgctggattgacagtagcagaggtcactggaagcaatactgtctcagttgcggaagatgaactgatgcgaatcttaattcttgtccgaaatttcttgcctggacatcatcaggttatcaatggggagtggaatgttgctgcaattgcgcacagagcttatgatttggaaggcaagactgttggaactgttggtgcangacgtattggcagacttttactccaacgattgaagccatttaactgtaatct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0236E02-u8qcS/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0236E02.1" temp_strand="+" temp_description="C02HBa0236E02.1  AC215430.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0236E02 sequenced_by:kribb upload_account_name:korea">
        <position start="65335" stop="68470"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="65635" g_stop="65689" g_length="55"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="55" r_length="55" r_score="0.982"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="65690" i_stop="66849" i_length="1160">
            <donor d_prob="1.000" d_score="0.98"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="66850" g_stop="67021" g_length="172"/>
          <reference_exon_boundary r_type="cDNA" r_start="56" r_stop="227" r_length="172" r_score="0.994"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="67022" i_stop="67764" i_length="743">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="0.987" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="67765" g_stop="68170" g_length="406"/>
          <reference_exon_boundary r_type="cDNA" r_start="228" r_stop="633" r_length="406" r_score="0.990"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0236E02.1" gen_strand="+" ref_id="SGN-E481246" ref_strand="+">
        <total_alignment_score>0.991</total_alignment_score>
        <cumulative_length_of_scored_exons>633</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0236E02.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E481246" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="65635" e_stop="65689"/>
          <exon e_start="66850" e_stop="67021"/>
          <exon e_start="67765" e_stop="68170"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGCAGCTCGTGCTATTGCTTCACCTTCATCCTTAGTTTTTACCAGAGAACTTCAGGTAACTAGCCATTTCTCCTCAATAGCCACTTTTTGTTGCTTTTGTTTTATATGACCTAGTTTTCGCCCTTTGATGAATTATCGGAAACCGGCACGGATCAACTCCGATTTTTCGAGAATCAAGTGAGTTGGAGATTGGAACAGAGGAAACTAAAGGAATTTAACCGTGTAAAGGAAAAAATTAAACACACTGTATTTGGTGCTCTACCCCTCGTCTCTTCTTTTTGGCTTTCCCCGTACTCTACACACCAAATGAAATGGCTCGGATATGAAAGGACTAATAACTTTTCAGTTTTCATTACTGCGTCCTTTTTTAAGCTTTCAGTTTTAATTTGCGTGAATATACCTAATTTTTATTAGGGTAGAGTTATATGTTTCAAATTAAATTGCTACCAAGTTAAATTTAAGAATGTTACATAAATTTAGAGACGGCAAGTTTATATACCAAGAAGGGTACTCCTTCATCCACAGAGAAACGGTGTCCAGTTCGAGTATGGGCGTGAATCTAGATATAGTTAATTCCAATGCAGATATCAGACATCGAGTGAGGAAAAAAAAGATTTTATTAATTTGTTATTTTTAGGTTGCTTTTCCTTTAACTGAAAATCTAACCCGGCAGGACCACAACAGTTCTTTTCCGATCATTACTAATGATACTTGATTTTCACGTGCGATTTCTGATATTTTTATACGGAGTAGGTGAAGAGTGAAATGTTTCACGGGTCTCAAGGACAATGGCAGCAGTGCTTCATTTTTTTTTGCATCTTCACGTGCTATATTATTACTTTGTTTATACTAGTTCGACTTGGAAAATCTTTTCATATTCAGTTGTCTGGGGAATAAATAAGATATTTCTTATTTTTTGATTAAAAAAAGAAGAAGATATTTCTTATTTAAAGAAGTGACAAATTGTACTAACTCATTTACCATGCCTAATATATTATATGTGACAATGATGATTTTTTTTAACTATTAATTGTTAGTTTGGACAAAAATGATCAAAGCAAGTATATTGAATAATGCTTATTTCTTGCCAACTGGTGCATCTACGAGATTATAGGAGTTGGATTATAATTTTAGCACATCCAGCATGCTTATATGACCTTAAAATATTCATGTATATTCTGTCCACTCACCTTTTATTTCTTCATTATTTTACAGGCTTCCCCTGGCCCCAAAAAGATTGTGGGTGTTTTCTACAAAGCAAATGAATATGCTGAAATGAACCCCAACTTTTTGGGCTGTGCAGAAAATGCCTTGGGGATACGTGAATGGTTAGAGTCTAAAGGTCATCAGTACATAGTCACTCCTGACAAAGAAGGACCAGATTGTGGTTAGTTCCTGCTAATCTATAATCTCTCATGTTCTATCCATTATCCCACTGAAGCCTATGCATTTCTAAAGATAATTTCTTTACCCTTCATGCTTGTACAACTAAACACATCTTAAAAGGAGTATTTTTGCATTTAAAACATGCATATATGTGCTGAAGTTTTTTAAAAATATATGGCTCACGTGAGGAGAATATAACGGTCATAGCAGGAACATTTATTTAGATAAAGAGCAAAGCAAAGTAAACAATATTTGCTTTGTTAGTGTTGGTCCTTTGCTGCTAGTGAATTATGATCAGGACATTGTGAGGTAGTTTCTTGCAGGAGGGAAAAAAAGAGTGTATTTTACCTTGATATACAGGTGTGCATTTGCAAAACGTCTATACTTCAGGACTCAGGTGTAAGTTGTACTAGTTTGATAAGACTATGGCTAAATTTTGTAATTTAAACAAGGATTTATCAAAGTCGCAGGGGCTTGTTTAGTTGTTGAGTAGAGTGCACACATGGATGCTTTAGTGATTTTCTGATGGATGACATGCTTAGTGTAAATCCTTGCTTATTAGTATCTTTTATCATGAGAAAGAATGGTGCCCTAGTCTGACACACAAACTACTCTGTGTCTTAGTTTTTCACTGTTGAATCCTTTACTATGCTCTATGCAAAGAAATTTCTCCTGAGCTAAAGTTTTTGAGTGTGTCCATCTATAATAGCTTCTTTTTTTTTTCCCATGACTTTCTCTCTGCAGAGCTTGAGAAACACATTCCTGATCTCCATGTGTTGATTTCGACCCCTTTTCATCCTGCCTATGTCACGGCTGAAAGGATCAAGAAGGCAAAAAATCTACAACTTCTGCTGACAGCTGGAATTGGATCAGATCATGTTGATCTGAAAGCTGCTGCTGCTGCTGGATTGACAGTAGCAGAGGTCACTGGAAGCAATACTGTCTCAGTTGCGGAAGATGAACTGATGCGAATCTTAATTCTTGTCCGAAATTTCTTACCTGGACATCATCAGGTTATCAATGGGGAGTGGAATGTTGCTGCAATTGCGCACAGAGCTTATGATTTGGAAGGCAAGACTGTTGGAACTGTTGGTGCAGGACGTATTGGCAGACTTTTACTCCAGCGATTGAAGCCATTTAACTGTAATCT</genome_strand>
        <mrna_strand>AGCAGCTCGTGCTATTACTTCACCTTCATCCTTAGTTTTTACCAGAGAACTTCAG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCTTCCCCTGGCCCCAAAAAGATTGTGGGTGTTTTCTACAAAGCAAATGAATATGCTGAAATGAACCCCAACTTTTTGGGCTGTGCAGAAAATGCCTTGGGGATACGTGAATGGTTAGAATCTAAAGGTCATCAGTACATAGTCACTCCTGACAAAGAAGGACCAGATTGTG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGCTTGAGAAACACATTCCTGATCTCCATGTGTTGATTTCGACCCCTTTTCATCCTGCCTATGTCACGGCTGAAAGGATCAAGAAGGCAAAAAATCTACAACTACTGCTGACAGCTGGAATTGGATCAGATCATGTTGATCTGAAAGCTGCTGCTGCTGCTGGATTGACAGTAGCAGAGGTCACTGGAAGCAATACTGTCTCAGTTGCGGAAGATGAACTGATGCGAATCTTAATTCTTGTCCGAAATTTCTTGCCTGGACATCATCAGGTTATCAATGGGGAGTGGAATGTTGCTGCAATTGCGCACAGAGCTTATGATTTGGAAGGCAAGACTGTTGGAACTGTTGGTGCANGACGTATTGGCAGACTTTTACTCCAACGATTGAAGCCATTTAACTGTAATCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0236E02-u8qcS/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E468788" ref_strand="+" ref_description="SGN-E468788 [cSTB-6-K7]">
      <seq>ccctggccccaaaaagatagtgggtgttttctacaaagcaaatgaatatgctgaaatgaaccccaactttttgggctgtgcagaaaatgccttggggatacgtgaatggctagaatctaaaggtcatcagtacataatcactcctgacaaagaaggaccagattgtgagcttgagaaacacattcctgatctccatgtgttgatttcgaccccttttcatcctgcctatgtcacggctgaaaggatcaagaaggcaaaaaatctacaacttctgctgacagctggaattggatcagatcatgttgatctgaaagctgctgctgctgctggattgacagtatcagaggtcactggaagcaatactgtctcagttgctgaagatgaactgatgcgaatcttaat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0236E02-u8qcS/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0236E02.1" temp_strand="+" temp_description="C02HBa0236E02.1  AC215430.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0236E02 sequenced_by:kribb upload_account_name:korea">
        <position start="66555" stop="68299"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="66855" g_stop="67021" g_length="167"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="167" r_length="167" r_score="0.976"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="67022" i_stop="67764" i_length="743">
            <donor d_prob="0.994" d_score="0.98"/>
            <acceptor a_prob="0.987" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="67765" g_stop="67999" g_length="235"/>
          <reference_exon_boundary r_type="cDNA" r_start="168" r_stop="402" r_length="235" r_score="0.991"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0236E02.1" gen_strand="+" ref_id="SGN-E468788" ref_strand="+">
        <total_alignment_score>0.985</total_alignment_score>
        <cumulative_length_of_scored_exons>402</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0236E02.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E468788" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="66855" e_stop="67021"/>
          <exon e_start="67765" e_stop="67999"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCCTGGCCCCAAAAAGATTGTGGGTGTTTTCTACAAAGCAAATGAATATGCTGAAATGAACCCCAACTTTTTGGGCTGTGCAGAAAATGCCTTGGGGATACGTGAATGGTTAGAGTCTAAAGGTCATCAGTACATAGTCACTCCTGACAAAGAAGGACCAGATTGTGGTTAGTTCCTGCTAATCTATAATCTCTCATGTTCTATCCATTATCCCACTGAAGCCTATGCATTTCTAAAGATAATTTCTTTACCCTTCATGCTTGTACAACTAAACACATCTTAAAAGGAGTATTTTTGCATTTAAAACATGCATATATGTGCTGAAGTTTTTTAAAAATATATGGCTCACGTGAGGAGAATATAACGGTCATAGCAGGAACATTTATTTAGATAAAGAGCAAAGCAAAGTAAACAATATTTGCTTTGTTAGTGTTGGTCCTTTGCTGCTAGTGAATTATGATCAGGACATTGTGAGGTAGTTTCTTGCAGGAGGGAAAAAAAGAGTGTATTTTACCTTGATATACAGGTGTGCATTTGCAAAACGTCTATACTTCAGGACTCAGGTGTAAGTTGTACTAGTTTGATAAGACTATGGCTAAATTTTGTAATTTAAACAAGGATTTATCAAAGTCGCAGGGGCTTGTTTAGTTGTTGAGTAGAGTGCACACATGGATGCTTTAGTGATTTTCTGATGGATGACATGCTTAGTGTAAATCCTTGCTTATTAGTATCTTTTATCATGAGAAAGAATGGTGCCCTAGTCTGACACACAAACTACTCTGTGTCTTAGTTTTTCACTGTTGAATCCTTTACTATGCTCTATGCAAAGAAATTTCTCCTGAGCTAAAGTTTTTGAGTGTGTCCATCTATAATAGCTTCTTTTTTTTTTCCCATGACTTTCTCTCTGCAGAGCTTGAGAAACACATTCCTGATCTCCATGTGTTGATTTCGACCCCTTTTCATCCTGCCTATGTCACGGCTGAAAGGATCAAGAAGGCAAAAAATCTACAACTTCTGCTGACAGCTGGAATTGGATCAGATCATGTTGATCTGAAAGCTGCTGCTGCTGCTGGATTGACAGTAGCAGAGGTCACTGGAAGCAATACTGTCTCAGTTGCGGAAGATGAACTGATGCGAATCTTAAT</genome_strand>
        <mrna_strand>CCCTGGCCCCAAAAAGATAGTGGGTGTTTTCTACAAAGCAAATGAATATGCTGAAATGAACCCCAACTTTTTGGGCTGTGCAGAAAATGCCTTGGGGATACGTGAATGGCTAGAATCTAAAGGTCATCAGTACATAATCACTCCTGACAAAGAAGGACCAGATTGTG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGCTTGAGAAACACATTCCTGATCTCCATGTGTTGATTTCGACCCCTTTTCATCCTGCCTATGTCACGGCTGAAAGGATCAAGAAGGCAAAAAATCTACAACTTCTGCTGACAGCTGGAATTGGATCAGATCATGTTGATCTGAAAGCTGCTGCTGCTGCTGGATTGACAGTATCAGAGGTCACTGGAAGCAATACTGTCTCAGTTGCTGAAGATGAACTGATGCGAATCTTAAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0236E02-u8qcS/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E293660" ref_strand="+" ref_description="SGN-E293660 [cLET-21-G5]">
      <seq>agattgtgggtgttttctacaaagcaaatgaatatgctgaaatgaaccccaactttttgggctgtgcagaaaatgccttggggatacgtgaatggttagagtctaaaggtcatcagtacatagtcactcctgacaaagaaggaccagattgtgagcttgagaaacacattcctgatctccatgtgttgatttcgaccccttttcatcctgcctatgtcacggctgaaaggatcaagaaggcaaaaaatctacaacttctgctgacagctggaattggatcagatcatgttgatctgaaagctgctgctgctgctggattgacagtagcagaggtcactggaagcaatactgtctcagttgcggaagatgaactgatgcgaatcttaattcttgtccgaaatttcttacctggacatcatcaggttatcaatggggagtggaatgttgctgcaattgcgcacagagcttatgatttggaaggcaagactgttggaactgttggtgcaggacgtattggcagacttttactccagcgattgaagccatttaactgtaatctactttaccatgaccgtcttaagatggattctgagctagagaatcaaattggagcaaagtttgaggaagatctcgataagatgct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0236E02-u8qcS/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0236E02.1" temp_strand="+" temp_description="C02HBa0236E02.1  AC215430.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0236E02 sequenced_by:kribb upload_account_name:korea">
        <position start="66569" stop="68554"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="66869" g_stop="67021" g_length="153"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="153" r_length="153" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="67022" i_stop="67764" i_length="743">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="0.987" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="67765" g_stop="68254" g_length="490"/>
          <reference_exon_boundary r_type="cDNA" r_start="154" r_stop="643" r_length="490" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0236E02.1" gen_strand="+" ref_id="SGN-E293660" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>643</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0236E02.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E293660" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="66869" e_stop="67021"/>
          <exon e_start="67765" e_stop="68254"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGATTGTGGGTGTTTTCTACAAAGCAAATGAATATGCTGAAATGAACCCCAACTTTTTGGGCTGTGCAGAAAATGCCTTGGGGATACGTGAATGGTTAGAGTCTAAAGGTCATCAGTACATAGTCACTCCTGACAAAGAAGGACCAGATTGTGGTTAGTTCCTGCTAATCTATAATCTCTCATGTTCTATCCATTATCCCACTGAAGCCTATGCATTTCTAAAGATAATTTCTTTACCCTTCATGCTTGTACAACTAAACACATCTTAAAAGGAGTATTTTTGCATTTAAAACATGCATATATGTGCTGAAGTTTTTTAAAAATATATGGCTCACGTGAGGAGAATATAACGGTCATAGCAGGAACATTTATTTAGATAAAGAGCAAAGCAAAGTAAACAATATTTGCTTTGTTAGTGTTGGTCCTTTGCTGCTAGTGAATTATGATCAGGACATTGTGAGGTAGTTTCTTGCAGGAGGGAAAAAAAGAGTGTATTTTACCTTGATATACAGGTGTGCATTTGCAAAACGTCTATACTTCAGGACTCAGGTGTAAGTTGTACTAGTTTGATAAGACTATGGCTAAATTTTGTAATTTAAACAAGGATTTATCAAAGTCGCAGGGGCTTGTTTAGTTGTTGAGTAGAGTGCACACATGGATGCTTTAGTGATTTTCTGATGGATGACATGCTTAGTGTAAATCCTTGCTTATTAGTATCTTTTATCATGAGAAAGAATGGTGCCCTAGTCTGACACACAAACTACTCTGTGTCTTAGTTTTTCACTGTTGAATCCTTTACTATGCTCTATGCAAAGAAATTTCTCCTGAGCTAAAGTTTTTGAGTGTGTCCATCTATAATAGCTTCTTTTTTTTTTCCCATGACTTTCTCTCTGCAGAGCTTGAGAAACACATTCCTGATCTCCATGTGTTGATTTCGACCCCTTTTCATCCTGCCTATGTCACGGCTGAAAGGATCAAGAAGGCAAAAAATCTACAACTTCTGCTGACAGCTGGAATTGGATCAGATCATGTTGATCTGAAAGCTGCTGCTGCTGCTGGATTGACAGTAGCAGAGGTCACTGGAAGCAATACTGTCTCAGTTGCGGAAGATGAACTGATGCGAATCTTAATTCTTGTCCGAAATTTCTTACCTGGACATCATCAGGTTATCAATGGGGAGTGGAATGTTGCTGCAATTGCGCACAGAGCTTATGATTTGGAAGGCAAGACTGTTGGAACTGTTGGTGCAGGACGTATTGGCAGACTTTTACTCCAGCGATTGAAGCCATTTAACTGTAATCTACTTTACCATGACCGTCTTAAGATGGATTCTGAGCTAGAGAATCAAATTGGAGCAAAGTTTGAGGAAGATCTCGATAAGATGCT</genome_strand>
        <mrna_strand>AGATTGTGGGTGTTTTCTACAAAGCAAATGAATATGCTGAAATGAACCCCAACTTTTTGGGCTGTGCAGAAAATGCCTTGGGGATACGTGAATGGTTAGAGTCTAAAGGTCATCAGTACATAGTCACTCCTGACAAAGAAGGACCAGATTGTG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGCTTGAGAAACACATTCCTGATCTCCATGTGTTGATTTCGACCCCTTTTCATCCTGCCTATGTCACGGCTGAAAGGATCAAGAAGGCAAAAAATCTACAACTTCTGCTGACAGCTGGAATTGGATCAGATCATGTTGATCTGAAAGCTGCTGCTGCTGCTGGATTGACAGTAGCAGAGGTCACTGGAAGCAATACTGTCTCAGTTGCGGAAGATGAACTGATGCGAATCTTAATTCTTGTCCGAAATTTCTTACCTGGACATCATCAGGTTATCAATGGGGAGTGGAATGTTGCTGCAATTGCGCACAGAGCTTATGATTTGGAAGGCAAGACTGTTGGAACTGTTGGTGCAGGACGTATTGGCAGACTTTTACTCCAGCGATTGAAGCCATTTAACTGTAATCTACTTTACCATGACCGTCTTAAGATGGATTCTGAGCTAGAGAATCAAATTGGAGCAAAGTTTGAGGAAGATCTCGATAAGATGCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0236E02-u8qcS/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E325679" ref_strand="+" ref_description="SGN-E325679 [cTOC-15-E24]">
      <seq>ttttctacaaagcaaatgaatatgctgaaatgaaccccaactttttgggctgtgcataaaatgccttggggatacgtgaatggttagagtctaaaggtcatcagatacatagtcactcctgacaaagaaggaccagattgtgagcttgagaaacacattcctgatctccatgtgttgatttctaccccttttcatcctgcctatgtcacggctgaaaggatcgataaggcgaaaaatctacaacttctgctgacagctggaattggatcagatcatgttgatctgaaagctgctgctgctgctggattgacagtatcagaggtcactggaagcgatactgtctcacttgcggaatatgaactgatgcgaatcttaattcttgtccgaaatttcttacctggacatcatcaggatatcaatggggagtggaatgttgctgcaattgcgcacatagcttatgagttggaatgcaagactgctggaactgttggtgcgagacgtattggcagacttttactccagcgaatgcagccatttaactggaatctactttacc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0236E02-u8qcS/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0236E02.1" temp_strand="+" temp_description="C02HBa0236E02.1  AC215430.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0236E02 sequenced_by:kribb upload_account_name:korea">
        <position start="66581" stop="68478"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="66881" g_stop="67021" g_length="141"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="142" r_length="142" r_score="0.979"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="67022" i_stop="67764" i_length="743">
            <donor d_prob="0.994" d_score="0.96"/>
            <acceptor a_prob="0.987" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="67765" g_stop="68178" g_length="414"/>
          <reference_exon_boundary r_type="cDNA" r_start="143" r_stop="556" r_length="414" r_score="0.957"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0236E02.1" gen_strand="+" ref_id="SGN-E325679" ref_strand="+">
        <total_alignment_score>0.962</total_alignment_score>
        <cumulative_length_of_scored_exons>555</cumulative_length_of_scored_exons>
        <coverage percentage="0.998" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0236E02.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E325679" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="66881" e_stop="67021"/>
          <exon e_start="67765" e_stop="68178"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTTCTACAAAGCAAATGAATATGCTGAAATGAACCCCAACTTTTTGGGCTGTGCAGAAAATGCCTTGGGGATACGTGAATGGTTAGAGTCTAAAGGTCATCAG-TACATAGTCACTCCTGACAAAGAAGGACCAGATTGTGGTTAGTTCCTGCTAATCTATAATCTCTCATGTTCTATCCATTATCCCACTGAAGCCTATGCATTTCTAAAGATAATTTCTTTACCCTTCATGCTTGTACAACTAAACACATCTTAAAAGGAGTATTTTTGCATTTAAAACATGCATATATGTGCTGAAGTTTTTTAAAAATATATGGCTCACGTGAGGAGAATATAACGGTCATAGCAGGAACATTTATTTAGATAAAGAGCAAAGCAAAGTAAACAATATTTGCTTTGTTAGTGTTGGTCCTTTGCTGCTAGTGAATTATGATCAGGACATTGTGAGGTAGTTTCTTGCAGGAGGGAAAAAAAGAGTGTATTTTACCTTGATATACAGGTGTGCATTTGCAAAACGTCTATACTTCAGGACTCAGGTGTAAGTTGTACTAGTTTGATAAGACTATGGCTAAATTTTGTAATTTAAACAAGGATTTATCAAAGTCGCAGGGGCTTGTTTAGTTGTTGAGTAGAGTGCACACATGGATGCTTTAGTGATTTTCTGATGGATGACATGCTTAGTGTAAATCCTTGCTTATTAGTATCTTTTATCATGAGAAAGAATGGTGCCCTAGTCTGACACACAAACTACTCTGTGTCTTAGTTTTTCACTGTTGAATCCTTTACTATGCTCTATGCAAAGAAATTTCTCCTGAGCTAAAGTTTTTGAGTGTGTCCATCTATAATAGCTTCTTTTTTTTTTCCCATGACTTTCTCTCTGCAGAGCTTGAGAAACACATTCCTGATCTCCATGTGTTGATTTCGACCCCTTTTCATCCTGCCTATGTCACGGCTGAAAGGATCAAGAAGGCAAAAAATCTACAACTTCTGCTGACAGCTGGAATTGGATCAGATCATGTTGATCTGAAAGCTGCTGCTGCTGCTGGATTGACAGTAGCAGAGGTCACTGGAAGCAATACTGTCTCAGTTGCGGAAGATGAACTGATGCGAATCTTAATTCTTGTCCGAAATTTCTTACCTGGACATCATCAGGTTATCAATGGGGAGTGGAATGTTGCTGCAATTGCGCACAGAGCTTATGATTTGGAAGGCAAGACTGTTGGAACTGTTGGTGCAGGACGTATTGGCAGACTTTTACTCCAGCGATTGAAGCCATTTAACTGTAATCTACTTTACC</genome_strand>
        <mrna_strand>TTTTCTACAAAGCAAATGAATATGCTGAAATGAACCCCAACTTTTTGGGCTGTGCATAAAATGCCTTGGGGATACGTGAATGGTTAGAGTCTAAAGGTCATCAGATACATAGTCACTCCTGACAAAGAAGGACCAGATTGTG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGCTTGAGAAACACATTCCTGATCTCCATGTGTTGATTTCTACCCCTTTTCATCCTGCCTATGTCACGGCTGAAAGGATCGATAAGGCGAAAAATCTACAACTTCTGCTGACAGCTGGAATTGGATCAGATCATGTTGATCTGAAAGCTGCTGCTGCTGCTGGATTGACAGTATCAGAGGTCACTGGAAGCGATACTGTCTCACTTGCGGAATATGAACTGATGCGAATCTTAATTCTTGTCCGAAATTTCTTACCTGGACATCATCAGGATATCAATGGGGAGTGGAATGTTGCTGCAATTGCGCACATAGCTTATGAGTTGGAATGCAAGACTGCTGGAACTGTTGGTGCGAGACGTATTGGCAGACTTTTACTCCAGCGAATGCAGCCATTTAACTGGAATCTACTTTACC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0236E02-u8qcS/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E325520" ref_strand="+" ref_description="SGN-E325520 [cTOC-15-E23]">
      <seq>tctacaaagcaaatgaatatgctgaaatgaaccccaactttttgggctgtgcagaaaatgccttggggatacgtgaatggttagagtctaaaggtcatcagtacatagtcactcctgacaaagaaggaccagattgtgagcttgagaaacacattcctgatctccatgtgttgatttcgaccccttttcatcctgcctatgtcacggctgaaaggatcaagaaggcaaaaaatctacaacttctgctgacagctggaattggatcagatcatgttgatctgaaagctgctgctgctgctggattgacagtagcagaggtcactggaagcaatactgtctcagttgcggaagatgaactgatgcgaatcttaattcttgtccgaaatttcttacctggacatcatcaggttatcaatggggagtggaatgttgctgcaattgcgcacagagcttatgatttggaaggcaagactgttggaactgttggtgcaggacgtattggcagacttttactccagcgattgaagccatttaactgtaatctactttaccatgaccgtcttaagatggattctgagctagagaatcaaattggagcaaagcttgaggaagatctcgataagatgctctcgaaatgtgacatagtggtcatcaatacgcctcttacagagaaaacaagaggaatgtttga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0236E02-u8qcS/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0236E02.1" temp_strand="+" temp_description="C02HBa0236E02.1  AC215430.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0236E02 sequenced_by:kribb upload_account_name:korea">
        <position start="66584" stop="68614"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="66884" g_stop="67021" g_length="138"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="138" r_length="138" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="67022" i_stop="67764" i_length="743">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="0.987" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="67765" g_stop="68305" g_length="541"/>
          <reference_exon_boundary r_type="cDNA" r_start="139" r_stop="679" r_length="541" r_score="0.996"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0236E02.1" gen_strand="+" ref_id="SGN-E325520" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>679</cumulative_length_of_scored_exons>
        <coverage percentage="0.983" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0236E02.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E325520" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="66884" e_stop="67021"/>
          <exon e_start="67765" e_stop="68305"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCTACAAAGCAAATGAATATGCTGAAATGAACCCCAACTTTTTGGGCTGTGCAGAAAATGCCTTGGGGATACGTGAATGGTTAGAGTCTAAAGGTCATCAGTACATAGTCACTCCTGACAAAGAAGGACCAGATTGTGGTTAGTTCCTGCTAATCTATAATCTCTCATGTTCTATCCATTATCCCACTGAAGCCTATGCATTTCTAAAGATAATTTCTTTACCCTTCATGCTTGTACAACTAAACACATCTTAAAAGGAGTATTTTTGCATTTAAAACATGCATATATGTGCTGAAGTTTTTTAAAAATATATGGCTCACGTGAGGAGAATATAACGGTCATAGCAGGAACATTTATTTAGATAAAGAGCAAAGCAAAGTAAACAATATTTGCTTTGTTAGTGTTGGTCCTTTGCTGCTAGTGAATTATGATCAGGACATTGTGAGGTAGTTTCTTGCAGGAGGGAAAAAAAGAGTGTATTTTACCTTGATATACAGGTGTGCATTTGCAAAACGTCTATACTTCAGGACTCAGGTGTAAGTTGTACTAGTTTGATAAGACTATGGCTAAATTTTGTAATTTAAACAAGGATTTATCAAAGTCGCAGGGGCTTGTTTAGTTGTTGAGTAGAGTGCACACATGGATGCTTTAGTGATTTTCTGATGGATGACATGCTTAGTGTAAATCCTTGCTTATTAGTATCTTTTATCATGAGAAAGAATGGTGCCCTAGTCTGACACACAAACTACTCTGTGTCTTAGTTTTTCACTGTTGAATCCTTTACTATGCTCTATGCAAAGAAATTTCTCCTGAGCTAAAGTTTTTGAGTGTGTCCATCTATAATAGCTTCTTTTTTTTTTCCCATGACTTTCTCTCTGCAGAGCTTGAGAAACACATTCCTGATCTCCATGTGTTGATTTCGACCCCTTTTCATCCTGCCTATGTCACGGCTGAAAGGATCAAGAAGGCAAAAAATCTACAACTTCTGCTGACAGCTGGAATTGGATCAGATCATGTTGATCTGAAAGCTGCTGCTGCTGCTGGATTGACAGTAGCAGAGGTCACTGGAAGCAATACTGTCTCAGTTGCGGAAGATGAACTGATGCGAATCTTAATTCTTGTCCGAAATTTCTTACCTGGACATCATCAGGTTATCAATGGGGAGTGGAATGTTGCTGCAATTGCGCACAGAGCTTATGATTTGGAAGGCAAGACTGTTGGAACTGTTGGTGCAGGACGTATTGGCAGACTTTTACTCCAGCGATTGAAGCCATTTAACTGTAATCTACTTTACCATGACCGTCTTAAGATGGATTCTGAGCTAGAGAATCAAATTGGAGCAAAGTTTGAGGAAGATCTCGATAAGATGCTCTCGAAATGTGACATAGTGGTCATCAATACGCCTCTTACAGAGAAAACAAA</genome_strand>
        <mrna_strand>TCTACAAAGCAAATGAATATGCTGAAATGAACCCCAACTTTTTGGGCTGTGCAGAAAATGCCTTGGGGATACGTGAATGGTTAGAGTCTAAAGGTCATCAGTACATAGTCACTCCTGACAAAGAAGGACCAGATTGTG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGCTTGAGAAACACATTCCTGATCTCCATGTGTTGATTTCGACCCCTTTTCATCCTGCCTATGTCACGGCTGAAAGGATCAAGAAGGCAAAAAATCTACAACTTCTGCTGACAGCTGGAATTGGATCAGATCATGTTGATCTGAAAGCTGCTGCTGCTGCTGGATTGACAGTAGCAGAGGTCACTGGAAGCAATACTGTCTCAGTTGCGGAAGATGAACTGATGCGAATCTTAATTCTTGTCCGAAATTTCTTACCTGGACATCATCAGGTTATCAATGGGGAGTGGAATGTTGCTGCAATTGCGCACAGAGCTTATGATTTGGAAGGCAAGACTGTTGGAACTGTTGGTGCAGGACGTATTGGCAGACTTTTACTCCAGCGATTGAAGCCATTTAACTGTAATCTACTTTACCATGACCGTCTTAAGATGGATTCTGAGCTAGAGAATCAAATTGGAGCAAAGCTTGAGGAAGATCTCGATAAGATGCTCTCGAAATGTGACATAGTGGTCATCAATACGCCTCTTACAGAGAAAACAAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0236E02-u8qcS/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E240660" ref_strand="+" ref_description="SGN-E240660 [cLED-21-G9]">
      <seq>tgaaattatccccaactttttgggctgtgcagaaaatgccttggggatacgtgaatggttagagtctaaaggtcatcagtacatagtcactcctgacaaagaaggaccagattgtgagcttgagaaacacattcctgatctccatgtgttgatttcgaccccttttcatcctgcctatgtcacggctgaaaggatcaagaaggcaaaaaatctacaacttctgctgacagctggaattggatcagatcatgttgatctgaaagctgctgctgctgctggattgacagtagcagaggtcactggaagcaatactgtctcagttgcggaagatgaactgatgcgaatcttaattcttgtccgaaatttcttacctggacatcatcaggttatcaatggggagtggaatgttgctgcaattgcgcacagagcttatgatttggaaggcaagactgttggaact</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0236E02-u8qcS/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0236E02.1" temp_strand="+" temp_description="C02HBa0236E02.1  AC215430.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0236E02 sequenced_by:kribb upload_account_name:korea">
        <position start="66606" stop="68408"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="66906" g_stop="67021" g_length="116"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="116" r_length="116" r_score="0.983"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="67022" i_stop="67764" i_length="743">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="0.987" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="67765" g_stop="68108" g_length="344"/>
          <reference_exon_boundary r_type="cDNA" r_start="117" r_stop="460" r_length="344" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0236E02.1" gen_strand="+" ref_id="SGN-E240660" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>460</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0236E02.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E240660" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="66906" e_stop="67021"/>
          <exon e_start="67765" e_stop="68108"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGAAATGAACCCCAACTTTTTGGGCTGTGCAGAAAATGCCTTGGGGATACGTGAATGGTTAGAGTCTAAAGGTCATCAGTACATAGTCACTCCTGACAAAGAAGGACCAGATTGTGGTTAGTTCCTGCTAATCTATAATCTCTCATGTTCTATCCATTATCCCACTGAAGCCTATGCATTTCTAAAGATAATTTCTTTACCCTTCATGCTTGTACAACTAAACACATCTTAAAAGGAGTATTTTTGCATTTAAAACATGCATATATGTGCTGAAGTTTTTTAAAAATATATGGCTCACGTGAGGAGAATATAACGGTCATAGCAGGAACATTTATTTAGATAAAGAGCAAAGCAAAGTAAACAATATTTGCTTTGTTAGTGTTGGTCCTTTGCTGCTAGTGAATTATGATCAGGACATTGTGAGGTAGTTTCTTGCAGGAGGGAAAAAAAGAGTGTATTTTACCTTGATATACAGGTGTGCATTTGCAAAACGTCTATACTTCAGGACTCAGGTGTAAGTTGTACTAGTTTGATAAGACTATGGCTAAATTTTGTAATTTAAACAAGGATTTATCAAAGTCGCAGGGGCTTGTTTAGTTGTTGAGTAGAGTGCACACATGGATGCTTTAGTGATTTTCTGATGGATGACATGCTTAGTGTAAATCCTTGCTTATTAGTATCTTTTATCATGAGAAAGAATGGTGCCCTAGTCTGACACACAAACTACTCTGTGTCTTAGTTTTTCACTGTTGAATCCTTTACTATGCTCTATGCAAAGAAATTTCTCCTGAGCTAAAGTTTTTGAGTGTGTCCATCTATAATAGCTTCTTTTTTTTTTCCCATGACTTTCTCTCTGCAGAGCTTGAGAAACACATTCCTGATCTCCATGTGTTGATTTCGACCCCTTTTCATCCTGCCTATGTCACGGCTGAAAGGATCAAGAAGGCAAAAAATCTACAACTTCTGCTGACAGCTGGAATTGGATCAGATCATGTTGATCTGAAAGCTGCTGCTGCTGCTGGATTGACAGTAGCAGAGGTCACTGGAAGCAATACTGTCTCAGTTGCGGAAGATGAACTGATGCGAATCTTAATTCTTGTCCGAAATTTCTTACCTGGACATCATCAGGTTATCAATGGGGAGTGGAATGTTGCTGCAATTGCGCACAGAGCTTATGATTTGGAAGGCAAGACTGTTGGAACT</genome_strand>
        <mrna_strand>TGAAATTATCCCCAACTTTTTGGGCTGTGCAGAAAATGCCTTGGGGATACGTGAATGGTTAGAGTCTAAAGGTCATCAGTACATAGTCACTCCTGACAAAGAAGGACCAGATTGTG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGCTTGAGAAACACATTCCTGATCTCCATGTGTTGATTTCGACCCCTTTTCATCCTGCCTATGTCACGGCTGAAAGGATCAAGAAGGCAAAAAATCTACAACTTCTGCTGACAGCTGGAATTGGATCAGATCATGTTGATCTGAAAGCTGCTGCTGCTGCTGGATTGACAGTAGCAGAGGTCACTGGAAGCAATACTGTCTCAGTTGCGGAAGATGAACTGATGCGAATCTTAATTCTTGTCCGAAATTTCTTACCTGGACATCATCAGGTTATCAATGGGGAGTGGAATGTTGCTGCAATTGCGCACAGAGCTTATGATTTGGAAGGCAAGACTGTTGGAACT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0236E02-u8qcS/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E281856" ref_strand="+" ref_description="SGN-E281856 [cLES-2-G10]">
      <seq>tttttgggctgtgcagaaaatgccttggggatacgtgaatggttagagtctaaaggtcatcagtacatagtcactcctgacaaagaaggaccagattgtgagcttgagaaacacattcctgatctccatgtgttgatttcgaccccttttcatcctgcctatgtcacggctgaaaggatcaagaaggcaaaaaatctacaacttctgctgacagctggaattggatcagatcatgttgatctgaaagctgctgctgctgctggattgacagtagcagaggtcactggaagcaatactgtctcagttgcggaagatgaactgatgcgaatcttaattcttgtccgaaatttcttacctggacatcatcaggttatcaatggggagtggaatgttgctgcaattgcgcacagagcttatgatttggaaggcaagactgttggaactg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0236E02-u8qcS/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0236E02.1" temp_strand="+" temp_description="C02HBa0236E02.1  AC215430.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0236E02 sequenced_by:kribb upload_account_name:korea">
        <position start="66622" stop="68409"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="66922" g_stop="67021" g_length="100"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="100" r_length="100" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="67022" i_stop="67764" i_length="743">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="0.987" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="67765" g_stop="68109" g_length="345"/>
          <reference_exon_boundary r_type="cDNA" r_start="101" r_stop="445" r_length="345" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0236E02.1" gen_strand="+" ref_id="SGN-E281856" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>445</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0236E02.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E281856" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="66922" e_stop="67021"/>
          <exon e_start="67765" e_stop="68109"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTTTGGGCTGTGCAGAAAATGCCTTGGGGATACGTGAATGGTTAGAGTCTAAAGGTCATCAGTACATAGTCACTCCTGACAAAGAAGGACCAGATTGTGGTTAGTTCCTGCTAATCTATAATCTCTCATGTTCTATCCATTATCCCACTGAAGCCTATGCATTTCTAAAGATAATTTCTTTACCCTTCATGCTTGTACAACTAAACACATCTTAAAAGGAGTATTTTTGCATTTAAAACATGCATATATGTGCTGAAGTTTTTTAAAAATATATGGCTCACGTGAGGAGAATATAACGGTCATAGCAGGAACATTTATTTAGATAAAGAGCAAAGCAAAGTAAACAATATTTGCTTTGTTAGTGTTGGTCCTTTGCTGCTAGTGAATTATGATCAGGACATTGTGAGGTAGTTTCTTGCAGGAGGGAAAAAAAGAGTGTATTTTACCTTGATATACAGGTGTGCATTTGCAAAACGTCTATACTTCAGGACTCAGGTGTAAGTTGTACTAGTTTGATAAGACTATGGCTAAATTTTGTAATTTAAACAAGGATTTATCAAAGTCGCAGGGGCTTGTTTAGTTGTTGAGTAGAGTGCACACATGGATGCTTTAGTGATTTTCTGATGGATGACATGCTTAGTGTAAATCCTTGCTTATTAGTATCTTTTATCATGAGAAAGAATGGTGCCCTAGTCTGACACACAAACTACTCTGTGTCTTAGTTTTTCACTGTTGAATCCTTTACTATGCTCTATGCAAAGAAATTTCTCCTGAGCTAAAGTTTTTGAGTGTGTCCATCTATAATAGCTTCTTTTTTTTTTCCCATGACTTTCTCTCTGCAGAGCTTGAGAAACACATTCCTGATCTCCATGTGTTGATTTCGACCCCTTTTCATCCTGCCTATGTCACGGCTGAAAGGATCAAGAAGGCAAAAAATCTACAACTTCTGCTGACAGCTGGAATTGGATCAGATCATGTTGATCTGAAAGCTGCTGCTGCTGCTGGATTGACAGTAGCAGAGGTCACTGGAAGCAATACTGTCTCAGTTGCGGAAGATGAACTGATGCGAATCTTAATTCTTGTCCGAAATTTCTTACCTGGACATCATCAGGTTATCAATGGGGAGTGGAATGTTGCTGCAATTGCGCACAGAGCTTATGATTTGGAAGGCAAGACTGTTGGAACTG</genome_strand>
        <mrna_strand>TTTTTGGGCTGTGCAGAAAATGCCTTGGGGATACGTGAATGGTTAGAGTCTAAAGGTCATCAGTACATAGTCACTCCTGACAAAGAAGGACCAGATTGTG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGCTTGAGAAACACATTCCTGATCTCCATGTGTTGATTTCGACCCCTTTTCATCCTGCCTATGTCACGGCTGAAAGGATCAAGAAGGCAAAAAATCTACAACTTCTGCTGACAGCTGGAATTGGATCAGATCATGTTGATCTGAAAGCTGCTGCTGCTGCTGGATTGACAGTAGCAGAGGTCACTGGAAGCAATACTGTCTCAGTTGCGGAAGATGAACTGATGCGAATCTTAATTCTTGTCCGAAATTTCTTACCTGGACATCATCAGGTTATCAATGGGGAGTGGAATGTTGCTGCAATTGCGCACAGAGCTTATGATTTGGAAGGCAAGACTGTTGGAACTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0236E02-u8qcS/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E402107" ref_strand="+" ref_description="SGN-E402107 [PPC-6-M20]">
      <seq>gctgtgcagaaaatgccttggggatacgtgaatggttagaatctaaaggtcatcagtacatagtcactcctgacaaagaaggaccagattgtgagcttgagaaacacattcctgatctccatgtgttgatttcgaccccttttcatcctgcctatgtcacggctgaaaggatcaagaaggcaaaaaatctacaactactgctgacagctggaattggatcagatcatgttgatctgaaagctgctgctgctgctggattgacagtagcagaggtcactggaagcaatactgtctcagttgcggaagatgaactgatgcgaatcttaattcttgtccgaaatttcttgcctggacatcatcaggttatcaatggggagtggaatgttgctgcaattgcgcacagagcttatgatttggaaggcaagactgttggaactgttggtgcaggacgtattggcagacttttactccaacgattgaagccatttaactgtaatctactttaccatgaccgtcttaagatggattctgagctagagaatcaaattggagcaaagttcgaggaagatctcgataagatgctctcgaaatgtgacatagtggtcatcaatacgcctcttacagagaaaacaaaaggaatgtttgacaaggaaagaattgcaaagttgaagaagggagttctaattgtaaacaatgctcgaggagcaattatggacactcaagcagttgttgatgcttgtaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0236E02-u8qcS/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0236E02.1" temp_strand="+" temp_description="C02HBa0236E02.1  AC215430.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0236E02 sequenced_by:kribb upload_account_name:korea">
        <position start="66629" stop="69454"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="66929" g_stop="67021" g_length="93"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="93" r_length="93" r_score="0.989"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="67022" i_stop="67764" i_length="743">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="0.987" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="67765" g_stop="68305" g_length="541"/>
          <reference_exon_boundary r_type="cDNA" r_start="94" r_stop="634" r_length="541" r_score="0.993"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="68306" i_stop="69046" i_length="741">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.768" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="69047" g_stop="69154" g_length="108"/>
          <reference_exon_boundary r_type="cDNA" r_start="635" r_stop="742" r_length="108" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0236E02.1" gen_strand="+" ref_id="SGN-E402107" ref_strand="+">
        <total_alignment_score>0.993</total_alignment_score>
        <cumulative_length_of_scored_exons>742</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0236E02.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E402107" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="66929" e_stop="67021"/>
          <exon e_start="67765" e_stop="68305"/>
          <exon e_start="69047" e_stop="69154"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCTGTGCAGAAAATGCCTTGGGGATACGTGAATGGTTAGAGTCTAAAGGTCATCAGTACATAGTCACTCCTGACAAAGAAGGACCAGATTGTGGTTAGTTCCTGCTAATCTATAATCTCTCATGTTCTATCCATTATCCCACTGAAGCCTATGCATTTCTAAAGATAATTTCTTTACCCTTCATGCTTGTACAACTAAACACATCTTAAAAGGAGTATTTTTGCATTTAAAACATGCATATATGTGCTGAAGTTTTTTAAAAATATATGGCTCACGTGAGGAGAATATAACGGTCATAGCAGGAACATTTATTTAGATAAAGAGCAAAGCAAAGTAAACAATATTTGCTTTGTTAGTGTTGGTCCTTTGCTGCTAGTGAATTATGATCAGGACATTGTGAGGTAGTTTCTTGCAGGAGGGAAAAAAAGAGTGTATTTTACCTTGATATACAGGTGTGCATTTGCAAAACGTCTATACTTCAGGACTCAGGTGTAAGTTGTACTAGTTTGATAAGACTATGGCTAAATTTTGTAATTTAAACAAGGATTTATCAAAGTCGCAGGGGCTTGTTTAGTTGTTGAGTAGAGTGCACACATGGATGCTTTAGTGATTTTCTGATGGATGACATGCTTAGTGTAAATCCTTGCTTATTAGTATCTTTTATCATGAGAAAGAATGGTGCCCTAGTCTGACACACAAACTACTCTGTGTCTTAGTTTTTCACTGTTGAATCCTTTACTATGCTCTATGCAAAGAAATTTCTCCTGAGCTAAAGTTTTTGAGTGTGTCCATCTATAATAGCTTCTTTTTTTTTTCCCATGACTTTCTCTCTGCAGAGCTTGAGAAACACATTCCTGATCTCCATGTGTTGATTTCGACCCCTTTTCATCCTGCCTATGTCACGGCTGAAAGGATCAAGAAGGCAAAAAATCTACAACTTCTGCTGACAGCTGGAATTGGATCAGATCATGTTGATCTGAAAGCTGCTGCTGCTGCTGGATTGACAGTAGCAGAGGTCACTGGAAGCAATACTGTCTCAGTTGCGGAAGATGAACTGATGCGAATCTTAATTCTTGTCCGAAATTTCTTACCTGGACATCATCAGGTTATCAATGGGGAGTGGAATGTTGCTGCAATTGCGCACAGAGCTTATGATTTGGAAGGCAAGACTGTTGGAACTGTTGGTGCAGGACGTATTGGCAGACTTTTACTCCAGCGATTGAAGCCATTTAACTGTAATCTACTTTACCATGACCGTCTTAAGATGGATTCTGAGCTAGAGAATCAAATTGGAGCAAAGTTTGAGGAAGATCTCGATAAGATGCTCTCGAAATGTGACATAGTGGTCATCAATACGCCTCTTACAGAGAAAACAAAGTAAGGTTTCTGTTTCTGTAATTACCCGTCGTAAACCTATACAATAATATTTATTGACAAAGCTTCTTATATTCAAGTTATTTTAACAATGACTTAATTATGAAATGAACTAAGTAAGCTAAAGTGAATATTCATTGAGAATGAAATATGATATTTAGCGAAGGGAAGGAGAATCTTTGGTGTCATCGTAATTTTTTGGTATCACTCTAGATCATATATAAAGTAGTTGTATATTTAGATTCCCCGATTGTATTCCCTAAGTTAAGAAATTCTCTTGAGCATCCACCATATACTATGATACATGACTTTGGCTAAGCTCAAAAAGACTATCTCAATGATGGCCCTCCATGGATTCTCCACCTATATAAGCCACGGCTAAAGAAAAATTGCTTGGCCAAGTTGTCTTTTACCTTTGGCATGATGCAAAAAACATTTGATATTCTTTCTGTGTGAACCACTGCTACGAGTAATATGTTCTTAGAGATCATGTTTTCTTTTTGTTCTTCCTTTAATTTTCTATTTGAAGATTTGTCATCAGTTAGAGGTCATCGGTAGGATGATAGATGTTCTCAGCAACTTGTGTTGCCAGAATAATATGATTGCCAATGGAGTATTTTTAAGATTCTTGGAGATGTAAGAGTTGTTTCTGTCCATACATCACTCTTCTCATGTCACTAAGGTCATTGATTGTTTCCATGTGCTATATCGCAAATTGCTCACAATTTTAACTATGTGATCCAGAGGAATGTTTGACAAGGAAAGAATTGCAAAGTTGAAGAAGGGAGTTCTAATTGTAAACAATGCTCGAGGAGCAATTATGGACACTCAAGCAGTTGTTGATGCTTGTAA</genome_strand>
        <mrna_strand>GCTGTGCAGAAAATGCCTTGGGGATACGTGAATGGTTAGAATCTAAAGGTCATCAGTACATAGTCACTCCTGACAAAGAAGGACCAGATTGTG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGCTTGAGAAACACATTCCTGATCTCCATGTGTTGATTTCGACCCCTTTTCATCCTGCCTATGTCACGGCTGAAAGGATCAAGAAGGCAAAAAATCTACAACTACTGCTGACAGCTGGAATTGGATCAGATCATGTTGATCTGAAAGCTGCTGCTGCTGCTGGATTGACAGTAGCAGAGGTCACTGGAAGCAATACTGTCTCAGTTGCGGAAGATGAACTGATGCGAATCTTAATTCTTGTCCGAAATTTCTTGCCTGGACATCATCAGGTTATCAATGGGGAGTGGAATGTTGCTGCAATTGCGCACAGAGCTTATGATTTGGAAGGCAAGACTGTTGGAACTGTTGGTGCAGGACGTATTGGCAGACTTTTACTCCAACGATTGAAGCCATTTAACTGTAATCTACTTTACCATGACCGTCTTAAGATGGATTCTGAGCTAGAGAATCAAATTGGAGCAAAGTTCGAGGAAGATCTCGATAAGATGCTCTCGAAATGTGACATAGTGGTCATCAATACGCCTCTTACAGAGAAAACAAA.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGGAATGTTTGACAAGGAAAGAATTGCAAAGTTGAAGAAGGGAGTTCTAATTGTAAACAATGCTCGAGGAGCAATTATGGACACTCAAGCAGTTGTTGATGCTTGTAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0236E02-u8qcS/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E241220" ref_strand="+" ref_description="SGN-E241220 [cLED-26-O5]">
      <seq>ttggggatacgtgaatggttagagtctaaaggtcatcagtacatagtcactcctgacaaagaaggaccagattgtgagcttgagaaacacattcctgatctccatgtgttgatttcgaccccttttcatcctgcctatgtcacggctgaaaggatcaagaaggcaaaaaatctacaacttctgctgacagctggaattggatcagatcatgttgatctgaaagctgctgctgctgctggattgacagtagcagaggtcactggaagcaatactgtctcagttgcggaagatgaactgatgcgaatcttaattcttgtccgaaatttcttacctggacatcatcaggttatcaatggggagtggaatgttgctgcaattgcgcacagagcttatgatttggaaggcaagactgttggaactgttggtgcaggacgtattggcagacttttactccagcgattgaagccatttaactgtaatctactttaccatgaccgtcttaagatggattctgagctagagaatcaaattggag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0236E02-u8qcS/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0236E02.1" temp_strand="+" temp_description="C02HBa0236E02.1  AC215430.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0236E02 sequenced_by:kribb upload_account_name:korea">
        <position start="66646" stop="68523"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="66946" g_stop="67021" g_length="76"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="76" r_length="76" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="67022" i_stop="67764" i_length="743">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="0.987" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="67765" g_stop="68223" g_length="459"/>
          <reference_exon_boundary r_type="cDNA" r_start="77" r_stop="535" r_length="459" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0236E02.1" gen_strand="+" ref_id="SGN-E241220" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>535</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0236E02.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E241220" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="66946" e_stop="67021"/>
          <exon e_start="67765" e_stop="68223"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTGGGGATACGTGAATGGTTAGAGTCTAAAGGTCATCAGTACATAGTCACTCCTGACAAAGAAGGACCAGATTGTGGTTAGTTCCTGCTAATCTATAATCTCTCATGTTCTATCCATTATCCCACTGAAGCCTATGCATTTCTAAAGATAATTTCTTTACCCTTCATGCTTGTACAACTAAACACATCTTAAAAGGAGTATTTTTGCATTTAAAACATGCATATATGTGCTGAAGTTTTTTAAAAATATATGGCTCACGTGAGGAGAATATAACGGTCATAGCAGGAACATTTATTTAGATAAAGAGCAAAGCAAAGTAAACAATATTTGCTTTGTTAGTGTTGGTCCTTTGCTGCTAGTGAATTATGATCAGGACATTGTGAGGTAGTTTCTTGCAGGAGGGAAAAAAAGAGTGTATTTTACCTTGATATACAGGTGTGCATTTGCAAAACGTCTATACTTCAGGACTCAGGTGTAAGTTGTACTAGTTTGATAAGACTATGGCTAAATTTTGTAATTTAAACAAGGATTTATCAAAGTCGCAGGGGCTTGTTTAGTTGTTGAGTAGAGTGCACACATGGATGCTTTAGTGATTTTCTGATGGATGACATGCTTAGTGTAAATCCTTGCTTATTAGTATCTTTTATCATGAGAAAGAATGGTGCCCTAGTCTGACACACAAACTACTCTGTGTCTTAGTTTTTCACTGTTGAATCCTTTACTATGCTCTATGCAAAGAAATTTCTCCTGAGCTAAAGTTTTTGAGTGTGTCCATCTATAATAGCTTCTTTTTTTTTTCCCATGACTTTCTCTCTGCAGAGCTTGAGAAACACATTCCTGATCTCCATGTGTTGATTTCGACCCCTTTTCATCCTGCCTATGTCACGGCTGAAAGGATCAAGAAGGCAAAAAATCTACAACTTCTGCTGACAGCTGGAATTGGATCAGATCATGTTGATCTGAAAGCTGCTGCTGCTGCTGGATTGACAGTAGCAGAGGTCACTGGAAGCAATACTGTCTCAGTTGCGGAAGATGAACTGATGCGAATCTTAATTCTTGTCCGAAATTTCTTACCTGGACATCATCAGGTTATCAATGGGGAGTGGAATGTTGCTGCAATTGCGCACAGAGCTTATGATTTGGAAGGCAAGACTGTTGGAACTGTTGGTGCAGGACGTATTGGCAGACTTTTACTCCAGCGATTGAAGCCATTTAACTGTAATCTACTTTACCATGACCGTCTTAAGATGGATTCTGAGCTAGAGAATCAAATTGGAG</genome_strand>
        <mrna_strand>TTGGGGATACGTGAATGGTTAGAGTCTAAAGGTCATCAGTACATAGTCACTCCTGACAAAGAAGGACCAGATTGTG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGCTTGAGAAACACATTCCTGATCTCCATGTGTTGATTTCGACCCCTTTTCATCCTGCCTATGTCACGGCTGAAAGGATCAAGAAGGCAAAAAATCTACAACTTCTGCTGACAGCTGGAATTGGATCAGATCATGTTGATCTGAAAGCTGCTGCTGCTGCTGGATTGACAGTAGCAGAGGTCACTGGAAGCAATACTGTCTCAGTTGCGGAAGATGAACTGATGCGAATCTTAATTCTTGTCCGAAATTTCTTACCTGGACATCATCAGGTTATCAATGGGGAGTGGAATGTTGCTGCAATTGCGCACAGAGCTTATGATTTGGAAGGCAAGACTGTTGGAACTGTTGGTGCAGGACGTATTGGCAGACTTTTACTCCAGCGATTGAAGCCATTTAACTGTAATCTACTTTACCATGACCGTCTTAAGATGGATTCTGAGCTAGAGAATCAAATTGGAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0236E02-u8qcS/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E243633" ref_strand="+" ref_description="SGN-E243633 [cLED-34-H7]">
      <seq>gaatggttagagtctaaaggtcatcagtacatagtcactcctgacaaagaaggaccagattgtgagcttgagaaacacattcctgatctccatgtgttgatttcgaccccttttcatcctgcctatgtcacggctgaaaggatcaagaaggcaaaaaatctacaacttctgctgacagctggaattggatcagatcatgttgatctgaaagctgctgctgctgctggattgacagtagcagaggtcactggaagcaatactgtctcagttgcggaagatgaactgatgcgaatcttaattcttgtccgaaatttcttacctggacatcatcaggttatcaatggggagtggaatgttgctgcaattgcgcacagagcttatgatttggaaggcaagactgttggaactgttggtgcaggacgtattggcagacttttactccagcgattgaagccatttaactgtaatctactttaccatgacc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0236E02-u8qcS/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0236E02.1" temp_strand="+" temp_description="C02HBa0236E02.1  AC215430.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0236E02 sequenced_by:kribb upload_account_name:korea">
        <position start="66658" stop="68484"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="66958" g_stop="67021" g_length="64"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="64" r_length="64" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="67022" i_stop="67764" i_length="743">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="0.987" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="67765" g_stop="68184" g_length="420"/>
          <reference_exon_boundary r_type="cDNA" r_start="65" r_stop="484" r_length="420" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0236E02.1" gen_strand="+" ref_id="SGN-E243633" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>484</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0236E02.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E243633" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="66958" e_stop="67021"/>
          <exon e_start="67765" e_stop="68184"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAATGGTTAGAGTCTAAAGGTCATCAGTACATAGTCACTCCTGACAAAGAAGGACCAGATTGTGGTTAGTTCCTGCTAATCTATAATCTCTCATGTTCTATCCATTATCCCACTGAAGCCTATGCATTTCTAAAGATAATTTCTTTACCCTTCATGCTTGTACAACTAAACACATCTTAAAAGGAGTATTTTTGCATTTAAAACATGCATATATGTGCTGAAGTTTTTTAAAAATATATGGCTCACGTGAGGAGAATATAACGGTCATAGCAGGAACATTTATTTAGATAAAGAGCAAAGCAAAGTAAACAATATTTGCTTTGTTAGTGTTGGTCCTTTGCTGCTAGTGAATTATGATCAGGACATTGTGAGGTAGTTTCTTGCAGGAGGGAAAAAAAGAGTGTATTTTACCTTGATATACAGGTGTGCATTTGCAAAACGTCTATACTTCAGGACTCAGGTGTAAGTTGTACTAGTTTGATAAGACTATGGCTAAATTTTGTAATTTAAACAAGGATTTATCAAAGTCGCAGGGGCTTGTTTAGTTGTTGAGTAGAGTGCACACATGGATGCTTTAGTGATTTTCTGATGGATGACATGCTTAGTGTAAATCCTTGCTTATTAGTATCTTTTATCATGAGAAAGAATGGTGCCCTAGTCTGACACACAAACTACTCTGTGTCTTAGTTTTTCACTGTTGAATCCTTTACTATGCTCTATGCAAAGAAATTTCTCCTGAGCTAAAGTTTTTGAGTGTGTCCATCTATAATAGCTTCTTTTTTTTTTCCCATGACTTTCTCTCTGCAGAGCTTGAGAAACACATTCCTGATCTCCATGTGTTGATTTCGACCCCTTTTCATCCTGCCTATGTCACGGCTGAAAGGATCAAGAAGGCAAAAAATCTACAACTTCTGCTGACAGCTGGAATTGGATCAGATCATGTTGATCTGAAAGCTGCTGCTGCTGCTGGATTGACAGTAGCAGAGGTCACTGGAAGCAATACTGTCTCAGTTGCGGAAGATGAACTGATGCGAATCTTAATTCTTGTCCGAAATTTCTTACCTGGACATCATCAGGTTATCAATGGGGAGTGGAATGTTGCTGCAATTGCGCACAGAGCTTATGATTTGGAAGGCAAGACTGTTGGAACTGTTGGTGCAGGACGTATTGGCAGACTTTTACTCCAGCGATTGAAGCCATTTAACTGTAATCTACTTTACCATGACC</genome_strand>
        <mrna_strand>GAATGGTTAGAGTCTAAAGGTCATCAGTACATAGTCACTCCTGACAAAGAAGGACCAGATTGTG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGCTTGAGAAACACATTCCTGATCTCCATGTGTTGATTTCGACCCCTTTTCATCCTGCCTATGTCACGGCTGAAAGGATCAAGAAGGCAAAAAATCTACAACTTCTGCTGACAGCTGGAATTGGATCAGATCATGTTGATCTGAAAGCTGCTGCTGCTGCTGGATTGACAGTAGCAGAGGTCACTGGAAGCAATACTGTCTCAGTTGCGGAAGATGAACTGATGCGAATCTTAATTCTTGTCCGAAATTTCTTACCTGGACATCATCAGGTTATCAATGGGGAGTGGAATGTTGCTGCAATTGCGCACAGAGCTTATGATTTGGAAGGCAAGACTGTTGGAACTGTTGGTGCAGGACGTATTGGCAGACTTTTACTCCAGCGATTGAAGCCATTTAACTGTAATCTACTTTACCATGACC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0236E02-u8qcS/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E228090" ref_strand="+" ref_description="SGN-E228090 [cLED-2-J1]">
      <seq>ggttagagtctaaaggtcatcagtacatagtcactcctgacaaagaaggaccagattgtgagcttgagaaacacattcctgatctccatgtgttgatttcgaccccttttcatcctgcctatgtcacggctgaaaggatcaagaaggcaaaaaatctacaacttctgctgacagctggaattggatcagatcatgttgatctgaaagctgctgctgctgctggattgacagtagcagaggtcactggaagcaatactgtctcagttgcggaagatgaactgatgcgaatcttattcttgtccgaaattcttacctggcatcatcaggttatcaatggggagtggaatgttgctgcaattgcgcacagagcttatgatttggaaggcaagactgttggaactgttggtgcaggacgtattggcagacttttactccagcgattgaagccatttaactgtaatctactttaccatgaccgtcttaagatggattctgagctagagaatcaaattggagcaaag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0236E02-u8qcS/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0236E02.1" temp_strand="+" temp_description="C02HBa0236E02.1  AC215430.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0236E02 sequenced_by:kribb upload_account_name:korea">
        <position start="66662" stop="68528"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="66962" g_stop="67021" g_length="60"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="60" r_length="60" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="67022" i_stop="67764" i_length="743">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="0.987" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="67765" g_stop="68228" g_length="464"/>
          <reference_exon_boundary r_type="cDNA" r_start="61" r_stop="521" r_length="461" r_score="0.994"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0236E02.1" gen_strand="+" ref_id="SGN-E228090" ref_strand="+">
        <total_alignment_score>0.994</total_alignment_score>
        <cumulative_length_of_scored_exons>524</cumulative_length_of_scored_exons>
        <coverage percentage="1.006" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0236E02.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E228090" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="66962" e_stop="67021"/>
          <exon e_start="67765" e_stop="68228"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGTTAGAGTCTAAAGGTCATCAGTACATAGTCACTCCTGACAAAGAAGGACCAGATTGTGGTTAGTTCCTGCTAATCTATAATCTCTCATGTTCTATCCATTATCCCACTGAAGCCTATGCATTTCTAAAGATAATTTCTTTACCCTTCATGCTTGTACAACTAAACACATCTTAAAAGGAGTATTTTTGCATTTAAAACATGCATATATGTGCTGAAGTTTTTTAAAAATATATGGCTCACGTGAGGAGAATATAACGGTCATAGCAGGAACATTTATTTAGATAAAGAGCAAAGCAAAGTAAACAATATTTGCTTTGTTAGTGTTGGTCCTTTGCTGCTAGTGAATTATGATCAGGACATTGTGAGGTAGTTTCTTGCAGGAGGGAAAAAAAGAGTGTATTTTACCTTGATATACAGGTGTGCATTTGCAAAACGTCTATACTTCAGGACTCAGGTGTAAGTTGTACTAGTTTGATAAGACTATGGCTAAATTTTGTAATTTAAACAAGGATTTATCAAAGTCGCAGGGGCTTGTTTAGTTGTTGAGTAGAGTGCACACATGGATGCTTTAGTGATTTTCTGATGGATGACATGCTTAGTGTAAATCCTTGCTTATTAGTATCTTTTATCATGAGAAAGAATGGTGCCCTAGTCTGACACACAAACTACTCTGTGTCTTAGTTTTTCACTGTTGAATCCTTTACTATGCTCTATGCAAAGAAATTTCTCCTGAGCTAAAGTTTTTGAGTGTGTCCATCTATAATAGCTTCTTTTTTTTTTCCCATGACTTTCTCTCTGCAGAGCTTGAGAAACACATTCCTGATCTCCATGTGTTGATTTCGACCCCTTTTCATCCTGCCTATGTCACGGCTGAAAGGATCAAGAAGGCAAAAAATCTACAACTTCTGCTGACAGCTGGAATTGGATCAGATCATGTTGATCTGAAAGCTGCTGCTGCTGCTGGATTGACAGTAGCAGAGGTCACTGGAAGCAATACTGTCTCAGTTGCGGAAGATGAACTGATGCGAATCTTAATTCTTGTCCGAAATTTCTTACCTGGACATCATCAGGTTATCAATGGGGAGTGGAATGTTGCTGCAATTGCGCACAGAGCTTATGATTTGGAAGGCAAGACTGTTGGAACTGTTGGTGCAGGACGTATTGGCAGACTTTTACTCCAGCGATTGAAGCCATTTAACTGTAATCTACTTTACCATGACCGTCTTAAGATGGATTCTGAGCTAGAGAATCAAATTGGAGCAAAG</genome_strand>
        <mrna_strand>GGTTAGAGTCTAAAGGTCATCAGTACATAGTCACTCCTGACAAAGAAGGACCAGATTGTG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGCTTGAGAAACACATTCCTGATCTCCATGTGTTGATTTCGACCCCTTTTCATCCTGCCTATGTCACGGCTGAAAGGATCAAGAAGGCAAAAAATCTACAACTTCTGCTGACAGCTGGAATTGGATCAGATCATGTTGATCTGAAAGCTGCTGCTGCTGCTGGATTGACAGTAGCAGAGGTCACTGGAAGCAATACTGTCTCAGTTGCGGAAGATGAACTGATGCGAATCTT-ATTCTTGTCCGAAA-TTCTTACCTGG-CATCATCAGGTTATCAATGGGGAGTGGAATGTTGCTGCAATTGCGCACAGAGCTTATGATTTGGAAGGCAAGACTGTTGGAACTGTTGGTGCAGGACGTATTGGCAGACTTTTACTCCAGCGATTGAAGCCATTTAACTGTAATCTACTTTACCATGACCGTCTTAAGATGGATTCTGAGCTAGAGAATCAAATTGGAGCAAAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0236E02-u8qcS/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E241284" ref_strand="+" ref_description="SGN-E241284 [cLED-26-J19]">
      <seq>ggttagagtctaaaggtcatcagtacatagtcactcctgacaaagaaggaccagattgtgagcttgagaaacacattcctgatctccatgtgttgatttcgaccccttttcatcctgcctatgtcacggctgaaaggatcaagaaggcaaaaaatctacaacttctgctgacagctggaattggatcagatcatgttgatctgaaagctgctgctgctgctggattgacagtagcagaggtcactggaagcaatactgtctcagttgcggaagatgaactgatgcgaatcttaattcttgtccgaaatttcttacctggacatcatcaggttatcaatggggagtggaatgttgctgcaattgcgcacagagcttatgatttggaaggcaagactgttggaactgttggtgcaggacgtattggcagacttttactccagcgattgaagccatttaactgtaatctactttaccatgaccgtcttaagatggattctgagctagagaatcaaattggag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0236E02-u8qcS/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0236E02.1" temp_strand="+" temp_description="C02HBa0236E02.1  AC215430.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0236E02 sequenced_by:kribb upload_account_name:korea">
        <position start="66662" stop="68523"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="66962" g_stop="67021" g_length="60"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="60" r_length="60" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="67022" i_stop="67764" i_length="743">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="0.987" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="67765" g_stop="68223" g_length="459"/>
          <reference_exon_boundary r_type="cDNA" r_start="61" r_stop="519" r_length="459" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0236E02.1" gen_strand="+" ref_id="SGN-E241284" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>519</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0236E02.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E241284" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="66962" e_stop="67021"/>
          <exon e_start="67765" e_stop="68223"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGTTAGAGTCTAAAGGTCATCAGTACATAGTCACTCCTGACAAAGAAGGACCAGATTGTGGTTAGTTCCTGCTAATCTATAATCTCTCATGTTCTATCCATTATCCCACTGAAGCCTATGCATTTCTAAAGATAATTTCTTTACCCTTCATGCTTGTACAACTAAACACATCTTAAAAGGAGTATTTTTGCATTTAAAACATGCATATATGTGCTGAAGTTTTTTAAAAATATATGGCTCACGTGAGGAGAATATAACGGTCATAGCAGGAACATTTATTTAGATAAAGAGCAAAGCAAAGTAAACAATATTTGCTTTGTTAGTGTTGGTCCTTTGCTGCTAGTGAATTATGATCAGGACATTGTGAGGTAGTTTCTTGCAGGAGGGAAAAAAAGAGTGTATTTTACCTTGATATACAGGTGTGCATTTGCAAAACGTCTATACTTCAGGACTCAGGTGTAAGTTGTACTAGTTTGATAAGACTATGGCTAAATTTTGTAATTTAAACAAGGATTTATCAAAGTCGCAGGGGCTTGTTTAGTTGTTGAGTAGAGTGCACACATGGATGCTTTAGTGATTTTCTGATGGATGACATGCTTAGTGTAAATCCTTGCTTATTAGTATCTTTTATCATGAGAAAGAATGGTGCCCTAGTCTGACACACAAACTACTCTGTGTCTTAGTTTTTCACTGTTGAATCCTTTACTATGCTCTATGCAAAGAAATTTCTCCTGAGCTAAAGTTTTTGAGTGTGTCCATCTATAATAGCTTCTTTTTTTTTTCCCATGACTTTCTCTCTGCAGAGCTTGAGAAACACATTCCTGATCTCCATGTGTTGATTTCGACCCCTTTTCATCCTGCCTATGTCACGGCTGAAAGGATCAAGAAGGCAAAAAATCTACAACTTCTGCTGACAGCTGGAATTGGATCAGATCATGTTGATCTGAAAGCTGCTGCTGCTGCTGGATTGACAGTAGCAGAGGTCACTGGAAGCAATACTGTCTCAGTTGCGGAAGATGAACTGATGCGAATCTTAATTCTTGTCCGAAATTTCTTACCTGGACATCATCAGGTTATCAATGGGGAGTGGAATGTTGCTGCAATTGCGCACAGAGCTTATGATTTGGAAGGCAAGACTGTTGGAACTGTTGGTGCAGGACGTATTGGCAGACTTTTACTCCAGCGATTGAAGCCATTTAACTGTAATCTACTTTACCATGACCGTCTTAAGATGGATTCTGAGCTAGAGAATCAAATTGGAG</genome_strand>
        <mrna_strand>GGTTAGAGTCTAAAGGTCATCAGTACATAGTCACTCCTGACAAAGAAGGACCAGATTGTG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGCTTGAGAAACACATTCCTGATCTCCATGTGTTGATTTCGACCCCTTTTCATCCTGCCTATGTCACGGCTGAAAGGATCAAGAAGGCAAAAAATCTACAACTTCTGCTGACAGCTGGAATTGGATCAGATCATGTTGATCTGAAAGCTGCTGCTGCTGCTGGATTGACAGTAGCAGAGGTCACTGGAAGCAATACTGTCTCAGTTGCGGAAGATGAACTGATGCGAATCTTAATTCTTGTCCGAAATTTCTTACCTGGACATCATCAGGTTATCAATGGGGAGTGGAATGTTGCTGCAATTGCGCACAGAGCTTATGATTTGGAAGGCAAGACTGTTGGAACTGTTGGTGCAGGACGTATTGGCAGACTTTTACTCCAGCGATTGAAGCCATTTAACTGTAATCTACTTTACCATGACCGTCTTAAGATGGATTCTGAGCTAGAGAATCAAATTGGAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0236E02-u8qcS/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E231718" ref_strand="+" ref_description="SGN-E231718 [cLED-4-L17]">
      <seq>ggttagagtctaaaggtcatcagtacatagtcactcctgacaaagaaggaccagattgtgagcttgagaaacacattcctgatctccatgtgttgatttcgaccccttttcatcctgcctatgtcacggctgaaaggatcaagaaggcaaaaaatctacaacttctgctgacagctggaattggatcagatcatgttgatctgaaagctgctgctgctgctggattgacagtagcagaggtcactggaagcaatactgtctcagttgcggaagatgaactgatgcgaatcttaattcttgtccgaaatttcttacctggacatcatcaggttatcaatggggagtggaatgttgctgcaattgcgcacagagcttatgatttggaaggcaagactgttggaactgttggtgcaggacgtattggcagacttttactccagcgattgaagccatttaactgtaatctactttaccatgaccgtcttaagatggattctgagctagagaatc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0236E02-u8qcS/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0236E02.1" temp_strand="+" temp_description="C02HBa0236E02.1  AC215430.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0236E02 sequenced_by:kribb upload_account_name:korea">
        <position start="66662" stop="68514"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="66962" g_stop="67021" g_length="60"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="60" r_length="60" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="67022" i_stop="67764" i_length="743">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="0.987" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="67765" g_stop="68214" g_length="450"/>
          <reference_exon_boundary r_type="cDNA" r_start="61" r_stop="510" r_length="450" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0236E02.1" gen_strand="+" ref_id="SGN-E231718" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>510</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0236E02.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E231718" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="66962" e_stop="67021"/>
          <exon e_start="67765" e_stop="68214"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGTTAGAGTCTAAAGGTCATCAGTACATAGTCACTCCTGACAAAGAAGGACCAGATTGTGGTTAGTTCCTGCTAATCTATAATCTCTCATGTTCTATCCATTATCCCACTGAAGCCTATGCATTTCTAAAGATAATTTCTTTACCCTTCATGCTTGTACAACTAAACACATCTTAAAAGGAGTATTTTTGCATTTAAAACATGCATATATGTGCTGAAGTTTTTTAAAAATATATGGCTCACGTGAGGAGAATATAACGGTCATAGCAGGAACATTTATTTAGATAAAGAGCAAAGCAAAGTAAACAATATTTGCTTTGTTAGTGTTGGTCCTTTGCTGCTAGTGAATTATGATCAGGACATTGTGAGGTAGTTTCTTGCAGGAGGGAAAAAAAGAGTGTATTTTACCTTGATATACAGGTGTGCATTTGCAAAACGTCTATACTTCAGGACTCAGGTGTAAGTTGTACTAGTTTGATAAGACTATGGCTAAATTTTGTAATTTAAACAAGGATTTATCAAAGTCGCAGGGGCTTGTTTAGTTGTTGAGTAGAGTGCACACATGGATGCTTTAGTGATTTTCTGATGGATGACATGCTTAGTGTAAATCCTTGCTTATTAGTATCTTTTATCATGAGAAAGAATGGTGCCCTAGTCTGACACACAAACTACTCTGTGTCTTAGTTTTTCACTGTTGAATCCTTTACTATGCTCTATGCAAAGAAATTTCTCCTGAGCTAAAGTTTTTGAGTGTGTCCATCTATAATAGCTTCTTTTTTTTTTCCCATGACTTTCTCTCTGCAGAGCTTGAGAAACACATTCCTGATCTCCATGTGTTGATTTCGACCCCTTTTCATCCTGCCTATGTCACGGCTGAAAGGATCAAGAAGGCAAAAAATCTACAACTTCTGCTGACAGCTGGAATTGGATCAGATCATGTTGATCTGAAAGCTGCTGCTGCTGCTGGATTGACAGTAGCAGAGGTCACTGGAAGCAATACTGTCTCAGTTGCGGAAGATGAACTGATGCGAATCTTAATTCTTGTCCGAAATTTCTTACCTGGACATCATCAGGTTATCAATGGGGAGTGGAATGTTGCTGCAATTGCGCACAGAGCTTATGATTTGGAAGGCAAGACTGTTGGAACTGTTGGTGCAGGACGTATTGGCAGACTTTTACTCCAGCGATTGAAGCCATTTAACTGTAATCTACTTTACCATGACCGTCTTAAGATGGATTCTGAGCTAGAGAATC</genome_strand>
        <mrna_strand>GGTTAGAGTCTAAAGGTCATCAGTACATAGTCACTCCTGACAAAGAAGGACCAGATTGTG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGCTTGAGAAACACATTCCTGATCTCCATGTGTTGATTTCGACCCCTTTTCATCCTGCCTATGTCACGGCTGAAAGGATCAAGAAGGCAAAAAATCTACAACTTCTGCTGACAGCTGGAATTGGATCAGATCATGTTGATCTGAAAGCTGCTGCTGCTGCTGGATTGACAGTAGCAGAGGTCACTGGAAGCAATACTGTCTCAGTTGCGGAAGATGAACTGATGCGAATCTTAATTCTTGTCCGAAATTTCTTACCTGGACATCATCAGGTTATCAATGGGGAGTGGAATGTTGCTGCAATTGCGCACAGAGCTTATGATTTGGAAGGCAAGACTGTTGGAACTGTTGGTGCAGGACGTATTGGCAGACTTTTACTCCAGCGATTGAAGCCATTTAACTGTAATCTACTTTACCATGACCGTCTTAAGATGGATTCTGAGCTAGAGAATC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0236E02-u8qcS/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E228091" ref_strand="+" ref_description="SGN-E228091 [cLED-2-J3]">
      <seq>ggttagagtctaaaggtcatcagtacatagtcactcctgacaaagaaggaccagattgtgagcttgagaaacacattcctgatctccatgtgttgatttcgaccccttttcatcctgcctatgtcacggctgaaaggatcaagaaggcaaaaaatctacaacttctgctgacagctggaattggatcagatcatgttgatctgaaagctgctgctgctgctggattgacagtagcagaggtcactggaagcaatactgtctcagttgcggaagatgaactgatgcgaatcttaattcttgtccgaaatttcttacctggacatcatcaggttatcaatggggag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0236E02-u8qcS/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0236E02.1" temp_strand="+" temp_description="C02HBa0236E02.1  AC215430.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0236E02 sequenced_by:kribb upload_account_name:korea">
        <position start="66662" stop="68348"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="66962" g_stop="67021" g_length="60"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="60" r_length="60" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="67022" i_stop="67764" i_length="743">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="0.987" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="67765" g_stop="68048" g_length="284"/>
          <reference_exon_boundary r_type="cDNA" r_start="61" r_stop="344" r_length="284" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0236E02.1" gen_strand="+" ref_id="SGN-E228091" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>344</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0236E02.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E228091" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="66962" e_stop="67021"/>
          <exon e_start="67765" e_stop="68048"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGTTAGAGTCTAAAGGTCATCAGTACATAGTCACTCCTGACAAAGAAGGACCAGATTGTGGTTAGTTCCTGCTAATCTATAATCTCTCATGTTCTATCCATTATCCCACTGAAGCCTATGCATTTCTAAAGATAATTTCTTTACCCTTCATGCTTGTACAACTAAACACATCTTAAAAGGAGTATTTTTGCATTTAAAACATGCATATATGTGCTGAAGTTTTTTAAAAATATATGGCTCACGTGAGGAGAATATAACGGTCATAGCAGGAACATTTATTTAGATAAAGAGCAAAGCAAAGTAAACAATATTTGCTTTGTTAGTGTTGGTCCTTTGCTGCTAGTGAATTATGATCAGGACATTGTGAGGTAGTTTCTTGCAGGAGGGAAAAAAAGAGTGTATTTTACCTTGATATACAGGTGTGCATTTGCAAAACGTCTATACTTCAGGACTCAGGTGTAAGTTGTACTAGTTTGATAAGACTATGGCTAAATTTTGTAATTTAAACAAGGATTTATCAAAGTCGCAGGGGCTTGTTTAGTTGTTGAGTAGAGTGCACACATGGATGCTTTAGTGATTTTCTGATGGATGACATGCTTAGTGTAAATCCTTGCTTATTAGTATCTTTTATCATGAGAAAGAATGGTGCCCTAGTCTGACACACAAACTACTCTGTGTCTTAGTTTTTCACTGTTGAATCCTTTACTATGCTCTATGCAAAGAAATTTCTCCTGAGCTAAAGTTTTTGAGTGTGTCCATCTATAATAGCTTCTTTTTTTTTTCCCATGACTTTCTCTCTGCAGAGCTTGAGAAACACATTCCTGATCTCCATGTGTTGATTTCGACCCCTTTTCATCCTGCCTATGTCACGGCTGAAAGGATCAAGAAGGCAAAAAATCTACAACTTCTGCTGACAGCTGGAATTGGATCAGATCATGTTGATCTGAAAGCTGCTGCTGCTGCTGGATTGACAGTAGCAGAGGTCACTGGAAGCAATACTGTCTCAGTTGCGGAAGATGAACTGATGCGAATCTTAATTCTTGTCCGAAATTTCTTACCTGGACATCATCAGGTTATCAATGGGGAG</genome_strand>
        <mrna_strand>GGTTAGAGTCTAAAGGTCATCAGTACATAGTCACTCCTGACAAAGAAGGACCAGATTGTG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGCTTGAGAAACACATTCCTGATCTCCATGTGTTGATTTCGACCCCTTTTCATCCTGCCTATGTCACGGCTGAAAGGATCAAGAAGGCAAAAAATCTACAACTTCTGCTGACAGCTGGAATTGGATCAGATCATGTTGATCTGAAAGCTGCTGCTGCTGCTGGATTGACAGTAGCAGAGGTCACTGGAAGCAATACTGTCTCAGTTGCGGAAGATGAACTGATGCGAATCTTAATTCTTGTCCGAAATTTCTTACCTGGACATCATCAGGTTATCAATGGGGAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0236E02-u8qcS/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E314767" ref_strand="+" ref_description="SGN-E314767 [cTOA-20-O4]">
      <seq>ttagagtctaaaggtcatcagtacatagtcactcctgacaaagaaggaccagattgtgagcttgagaaacacattcctgatctccatgtgttgatttcgaccccttttcatcctgcctatgtcacggctgaaaggatcaagaaggcaaaaaatctacaacttctgctgacagctggaattggatcagatcatgttgatctgaaagctgctgctgctgctggattgacagtagcagaggtcactggaagcaatactgtctcagttgcggaagatgaactgatgcgaatcttaattcttgtccgaaatttcttacctggacatcatcaggttatcaatggggagtggaatgttgctgcaattgcgcacagagcttatgatttggaaggcaagactgttggaactgttggtgcaggacgtattggcagacttttactccagcgattgaagccatttaactgtaatctactttaccatgaccgtcttaagatggattctgagctagagaatcaaattggagcaaagtttgaggaagatctcgantagatgctctcgaaatgtgacatagtggtcatcaatacgcctcttacagagaaaacaaaaggatgtttga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0236E02-u8qcS/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0236E02.1" temp_strand="+" temp_description="C02HBa0236E02.1  AC215430.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0236E02 sequenced_by:kribb upload_account_name:korea">
        <position start="66664" stop="68614"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="66964" g_stop="67021" g_length="58"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="58" r_length="58" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="67022" i_stop="67764" i_length="743">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="0.987" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="67765" g_stop="68305" g_length="541"/>
          <reference_exon_boundary r_type="cDNA" r_start="59" r_stop="599" r_length="541" r_score="0.996"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0236E02.1" gen_strand="+" ref_id="SGN-E314767" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>599</cumulative_length_of_scored_exons>
        <coverage percentage="0.982" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0236E02.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E314767" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="66964" e_stop="67021"/>
          <exon e_start="67765" e_stop="68305"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTAGAGTCTAAAGGTCATCAGTACATAGTCACTCCTGACAAAGAAGGACCAGATTGTGGTTAGTTCCTGCTAATCTATAATCTCTCATGTTCTATCCATTATCCCACTGAAGCCTATGCATTTCTAAAGATAATTTCTTTACCCTTCATGCTTGTACAACTAAACACATCTTAAAAGGAGTATTTTTGCATTTAAAACATGCATATATGTGCTGAAGTTTTTTAAAAATATATGGCTCACGTGAGGAGAATATAACGGTCATAGCAGGAACATTTATTTAGATAAAGAGCAAAGCAAAGTAAACAATATTTGCTTTGTTAGTGTTGGTCCTTTGCTGCTAGTGAATTATGATCAGGACATTGTGAGGTAGTTTCTTGCAGGAGGGAAAAAAAGAGTGTATTTTACCTTGATATACAGGTGTGCATTTGCAAAACGTCTATACTTCAGGACTCAGGTGTAAGTTGTACTAGTTTGATAAGACTATGGCTAAATTTTGTAATTTAAACAAGGATTTATCAAAGTCGCAGGGGCTTGTTTAGTTGTTGAGTAGAGTGCACACATGGATGCTTTAGTGATTTTCTGATGGATGACATGCTTAGTGTAAATCCTTGCTTATTAGTATCTTTTATCATGAGAAAGAATGGTGCCCTAGTCTGACACACAAACTACTCTGTGTCTTAGTTTTTCACTGTTGAATCCTTTACTATGCTCTATGCAAAGAAATTTCTCCTGAGCTAAAGTTTTTGAGTGTGTCCATCTATAATAGCTTCTTTTTTTTTTCCCATGACTTTCTCTCTGCAGAGCTTGAGAAACACATTCCTGATCTCCATGTGTTGATTTCGACCCCTTTTCATCCTGCCTATGTCACGGCTGAAAGGATCAAGAAGGCAAAAAATCTACAACTTCTGCTGACAGCTGGAATTGGATCAGATCATGTTGATCTGAAAGCTGCTGCTGCTGCTGGATTGACAGTAGCAGAGGTCACTGGAAGCAATACTGTCTCAGTTGCGGAAGATGAACTGATGCGAATCTTAATTCTTGTCCGAAATTTCTTACCTGGACATCATCAGGTTATCAATGGGGAGTGGAATGTTGCTGCAATTGCGCACAGAGCTTATGATTTGGAAGGCAAGACTGTTGGAACTGTTGGTGCAGGACGTATTGGCAGACTTTTACTCCAGCGATTGAAGCCATTTAACTGTAATCTACTTTACCATGACCGTCTTAAGATGGATTCTGAGCTAGAGAATCAAATTGGAGCAAAGTTTGAGGAAGATCTCGATAAGATGCTCTCGAAATGTGACATAGTGGTCATCAATACGCCTCTTACAGAGAAAACAAA</genome_strand>
        <mrna_strand>TTAGAGTCTAAAGGTCATCAGTACATAGTCACTCCTGACAAAGAAGGACCAGATTGTG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGCTTGAGAAACACATTCCTGATCTCCATGTGTTGATTTCGACCCCTTTTCATCCTGCCTATGTCACGGCTGAAAGGATCAAGAAGGCAAAAAATCTACAACTTCTGCTGACAGCTGGAATTGGATCAGATCATGTTGATCTGAAAGCTGCTGCTGCTGCTGGATTGACAGTAGCAGAGGTCACTGGAAGCAATACTGTCTCAGTTGCGGAAGATGAACTGATGCGAATCTTAATTCTTGTCCGAAATTTCTTACCTGGACATCATCAGGTTATCAATGGGGAGTGGAATGTTGCTGCAATTGCGCACAGAGCTTATGATTTGGAAGGCAAGACTGTTGGAACTGTTGGTGCAGGACGTATTGGCAGACTTTTACTCCAGCGATTGAAGCCATTTAACTGTAATCTACTTTACCATGACCGTCTTAAGATGGATTCTGAGCTAGAGAATCAAATTGGAGCAAAGTTTGAGGAAGATCTCGANTAGATGCTCTCGAAATGTGACATAGTGGTCATCAATACGCCTCTTACAGAGAAAACAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0236E02-u8qcS/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E346379" ref_strand="+" ref_description="SGN-E346379 [cTOF-23-A6]">
      <seq>taaaggtcatcagtacatagtcactcctgacaaagaaggaccagattgtgagcttgagaaacacattcctgatctccatgtgttgatttcgaccccttttcatcctgcctatgtcacggctgaaaggatcaagaaggcaaaaaatctacaacttctgctgacagctggaattggatcagatcatgttgatctgaaagctgctgctgctgctggattgacagtagcagaggtcactggaagcaatactgtctcagttgcggaagatgaactgatgcgaatcttaattcttgtccgaaatttcttacctggacatcatcaggttatcaatggggagtggaatgttgctgcaattgcgcacagagcttatgatttggaaggcaagactgttggaactgttggtgcaggacgtattggcagacttttactccagcgattgaagccatttaactgtaatctactttaccatgaccgtcttaagatggattctgagctagagaatcaaattggagcaaagtttgaggaagatctcgataagatgctctcgaaatgtgacatagtggtcatcaatacgcctcttacagagaaaacaaaaggaatgtttgacaaggaaagaattgcaaagttgaagaagggagttctaattgtaaacaatgctcgaggagcaattatggacactcaagcagttgttgatgcttgtaacagcggtcatattg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0236E02-u8qcS/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0236E02.1" temp_strand="+" temp_description="C02HBa0236E02.1  AC215430.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0236E02 sequenced_by:kribb upload_account_name:korea">
        <position start="66672" stop="69468"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="66972" g_stop="67021" g_length="50"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="50" r_length="50" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="67022" i_stop="67764" i_length="743">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="0.987" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="67765" g_stop="68305" g_length="541"/>
          <reference_exon_boundary r_type="cDNA" r_start="51" r_stop="591" r_length="541" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="68306" i_stop="69046" i_length="741">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.768" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="69047" g_stop="69168" g_length="122"/>
          <reference_exon_boundary r_type="cDNA" r_start="592" r_stop="713" r_length="122" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0236E02.1" gen_strand="+" ref_id="SGN-E346379" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>713</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0236E02.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E346379" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="66972" e_stop="67021"/>
          <exon e_start="67765" e_stop="68305"/>
          <exon e_start="69047" e_stop="69168"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TAAAGGTCATCAGTACATAGTCACTCCTGACAAAGAAGGACCAGATTGTGGTTAGTTCCTGCTAATCTATAATCTCTCATGTTCTATCCATTATCCCACTGAAGCCTATGCATTTCTAAAGATAATTTCTTTACCCTTCATGCTTGTACAACTAAACACATCTTAAAAGGAGTATTTTTGCATTTAAAACATGCATATATGTGCTGAAGTTTTTTAAAAATATATGGCTCACGTGAGGAGAATATAACGGTCATAGCAGGAACATTTATTTAGATAAAGAGCAAAGCAAAGTAAACAATATTTGCTTTGTTAGTGTTGGTCCTTTGCTGCTAGTGAATTATGATCAGGACATTGTGAGGTAGTTTCTTGCAGGAGGGAAAAAAAGAGTGTATTTTACCTTGATATACAGGTGTGCATTTGCAAAACGTCTATACTTCAGGACTCAGGTGTAAGTTGTACTAGTTTGATAAGACTATGGCTAAATTTTGTAATTTAAACAAGGATTTATCAAAGTCGCAGGGGCTTGTTTAGTTGTTGAGTAGAGTGCACACATGGATGCTTTAGTGATTTTCTGATGGATGACATGCTTAGTGTAAATCCTTGCTTATTAGTATCTTTTATCATGAGAAAGAATGGTGCCCTAGTCTGACACACAAACTACTCTGTGTCTTAGTTTTTCACTGTTGAATCCTTTACTATGCTCTATGCAAAGAAATTTCTCCTGAGCTAAAGTTTTTGAGTGTGTCCATCTATAATAGCTTCTTTTTTTTTTCCCATGACTTTCTCTCTGCAGAGCTTGAGAAACACATTCCTGATCTCCATGTGTTGATTTCGACCCCTTTTCATCCTGCCTATGTCACGGCTGAAAGGATCAAGAAGGCAAAAAATCTACAACTTCTGCTGACAGCTGGAATTGGATCAGATCATGTTGATCTGAAAGCTGCTGCTGCTGCTGGATTGACAGTAGCAGAGGTCACTGGAAGCAATACTGTCTCAGTTGCGGAAGATGAACTGATGCGAATCTTAATTCTTGTCCGAAATTTCTTACCTGGACATCATCAGGTTATCAATGGGGAGTGGAATGTTGCTGCAATTGCGCACAGAGCTTATGATTTGGAAGGCAAGACTGTTGGAACTGTTGGTGCAGGACGTATTGGCAGACTTTTACTCCAGCGATTGAAGCCATTTAACTGTAATCTACTTTACCATGACCGTCTTAAGATGGATTCTGAGCTAGAGAATCAAATTGGAGCAAAGTTTGAGGAAGATCTCGATAAGATGCTCTCGAAATGTGACATAGTGGTCATCAATACGCCTCTTACAGAGAAAACAAAGTAAGGTTTCTGTTTCTGTAATTACCCGTCGTAAACCTATACAATAATATTTATTGACAAAGCTTCTTATATTCAAGTTATTTTAACAATGACTTAATTATGAAATGAACTAAGTAAGCTAAAGTGAATATTCATTGAGAATGAAATATGATATTTAGCGAAGGGAAGGAGAATCTTTGGTGTCATCGTAATTTTTTGGTATCACTCTAGATCATATATAAAGTAGTTGTATATTTAGATTCCCCGATTGTATTCCCTAAGTTAAGAAATTCTCTTGAGCATCCACCATATACTATGATACATGACTTTGGCTAAGCTCAAAAAGACTATCTCAATGATGGCCCTCCATGGATTCTCCACCTATATAAGCCACGGCTAAAGAAAAATTGCTTGGCCAAGTTGTCTTTTACCTTTGGCATGATGCAAAAAACATTTGATATTCTTTCTGTGTGAACCACTGCTACGAGTAATATGTTCTTAGAGATCATGTTTTCTTTTTGTTCTTCCTTTAATTTTCTATTTGAAGATTTGTCATCAGTTAGAGGTCATCGGTAGGATGATAGATGTTCTCAGCAACTTGTGTTGCCAGAATAATATGATTGCCAATGGAGTATTTTTAAGATTCTTGGAGATGTAAGAGTTGTTTCTGTCCATACATCACTCTTCTCATGTCACTAAGGTCATTGATTGTTTCCATGTGCTATATCGCAAATTGCTCACAATTTTAACTATGTGATCCAGAGGAATGTTTGACAAGGAAAGAATTGCAAAGTTGAAGAAGGGAGTTCTAATTGTAAACAATGCTCGAGGAGCAATTATGGACACTCAAGCAGTTGTTGATGCTTGTAACAGCGGTCATATTG</genome_strand>
        <mrna_strand>TAAAGGTCATCAGTACATAGTCACTCCTGACAAAGAAGGACCAGATTGTG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGCTTGAGAAACACATTCCTGATCTCCATGTGTTGATTTCGACCCCTTTTCATCCTGCCTATGTCACGGCTGAAAGGATCAAGAAGGCAAAAAATCTACAACTTCTGCTGACAGCTGGAATTGGATCAGATCATGTTGATCTGAAAGCTGCTGCTGCTGCTGGATTGACAGTAGCAGAGGTCACTGGAAGCAATACTGTCTCAGTTGCGGAAGATGAACTGATGCGAATCTTAATTCTTGTCCGAAATTTCTTACCTGGACATCATCAGGTTATCAATGGGGAGTGGAATGTTGCTGCAATTGCGCACAGAGCTTATGATTTGGAAGGCAAGACTGTTGGAACTGTTGGTGCAGGACGTATTGGCAGACTTTTACTCCAGCGATTGAAGCCATTTAACTGTAATCTACTTTACCATGACCGTCTTAAGATGGATTCTGAGCTAGAGAATCAAATTGGAGCAAAGTTTGAGGAAGATCTCGATAAGATGCTCTCGAAATGTGACATAGTGGTCATCAATACGCCTCTTACAGAGAAAACAAA.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGGAATGTTTGACAAGGAAAGAATTGCAAAGTTGAAGAAGGGAGTTCTAATTGTAAACAATGCTCGAGGAGCAATTATGGACACTCAAGCAGTTGTTGATGCTTGTAACAGCGGTCATATTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0236E02-u8qcS/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E567505" ref_strand="+" ref_description="SGN-E567505 [11640]">
      <seq>atcagtacatagtcactcctgacaaagaaggaccagattgtgagcttgagaaacacattcctgatctccatgtgttgatttcgaccccttttcatcctgcctatgtcacggctgaaaggatcaagaaggcaaaaaatctacaacttctgctgacagctggaattggatcagatcatgttgatctgaaagctgctgctgctgctggattgacagtagcagaggtcactggaagcaatactgtctcagttgctgaagatgaactgatgcgaatcttaattcttgtccgaaatttcttgcctggacatcatcaggttatcaatggggagtggaatgttgctgcaattgcgcacagagcttatgatttggaaggcaagactgttggaactgttggtgc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0236E02-u8qcS/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0236E02.1" temp_strand="+" temp_description="C02HBa0236E02.1  AC215430.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0236E02 sequenced_by:kribb upload_account_name:korea">
        <position start="66680" stop="68416"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="66980" g_stop="67021" g_length="42"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="42" r_length="42" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="67022" i_stop="67764" i_length="743">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="0.987" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="67765" g_stop="68116" g_length="352"/>
          <reference_exon_boundary r_type="cDNA" r_start="43" r_stop="394" r_length="352" r_score="0.994"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0236E02.1" gen_strand="+" ref_id="SGN-E567505" ref_strand="+">
        <total_alignment_score>0.994</total_alignment_score>
        <cumulative_length_of_scored_exons>394</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0236E02.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E567505" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="66980" e_stop="67021"/>
          <exon e_start="67765" e_stop="68116"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATCAGTACATAGTCACTCCTGACAAAGAAGGACCAGATTGTGGTTAGTTCCTGCTAATCTATAATCTCTCATGTTCTATCCATTATCCCACTGAAGCCTATGCATTTCTAAAGATAATTTCTTTACCCTTCATGCTTGTACAACTAAACACATCTTAAAAGGAGTATTTTTGCATTTAAAACATGCATATATGTGCTGAAGTTTTTTAAAAATATATGGCTCACGTGAGGAGAATATAACGGTCATAGCAGGAACATTTATTTAGATAAAGAGCAAAGCAAAGTAAACAATATTTGCTTTGTTAGTGTTGGTCCTTTGCTGCTAGTGAATTATGATCAGGACATTGTGAGGTAGTTTCTTGCAGGAGGGAAAAAAAGAGTGTATTTTACCTTGATATACAGGTGTGCATTTGCAAAACGTCTATACTTCAGGACTCAGGTGTAAGTTGTACTAGTTTGATAAGACTATGGCTAAATTTTGTAATTTAAACAAGGATTTATCAAAGTCGCAGGGGCTTGTTTAGTTGTTGAGTAGAGTGCACACATGGATGCTTTAGTGATTTTCTGATGGATGACATGCTTAGTGTAAATCCTTGCTTATTAGTATCTTTTATCATGAGAAAGAATGGTGCCCTAGTCTGACACACAAACTACTCTGTGTCTTAGTTTTTCACTGTTGAATCCTTTACTATGCTCTATGCAAAGAAATTTCTCCTGAGCTAAAGTTTTTGAGTGTGTCCATCTATAATAGCTTCTTTTTTTTTTCCCATGACTTTCTCTCTGCAGAGCTTGAGAAACACATTCCTGATCTCCATGTGTTGATTTCGACCCCTTTTCATCCTGCCTATGTCACGGCTGAAAGGATCAAGAAGGCAAAAAATCTACAACTTCTGCTGACAGCTGGAATTGGATCAGATCATGTTGATCTGAAAGCTGCTGCTGCTGCTGGATTGACAGTAGCAGAGGTCACTGGAAGCAATACTGTCTCAGTTGCGGAAGATGAACTGATGCGAATCTTAATTCTTGTCCGAAATTTCTTACCTGGACATCATCAGGTTATCAATGGGGAGTGGAATGTTGCTGCAATTGCGCACAGAGCTTATGATTTGGAAGGCAAGACTGTTGGAACTGTTGGTGC</genome_strand>
        <mrna_strand>ATCAGTACATAGTCACTCCTGACAAAGAAGGACCAGATTGTG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGCTTGAGAAACACATTCCTGATCTCCATGTGTTGATTTCGACCCCTTTTCATCCTGCCTATGTCACGGCTGAAAGGATCAAGAAGGCAAAAAATCTACAACTTCTGCTGACAGCTGGAATTGGATCAGATCATGTTGATCTGAAAGCTGCTGCTGCTGCTGGATTGACAGTAGCAGAGGTCACTGGAAGCAATACTGTCTCAGTTGCTGAAGATGAACTGATGCGAATCTTAATTCTTGTCCGAAATTTCTTGCCTGGACATCATCAGGTTATCAATGGGGAGTGGAATGTTGCTGCAATTGCGCACAGAGCTTATGATTTGGAAGGCAAGACTGTTGGAACTGTTGGTGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0236E02-u8qcS/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E261438" ref_strand="+" ref_description="SGN-E261438 [cLEG-57-B24]">
      <seq>cgagactagttctctcaaagaaggaccagattgtgagcttgagaaacacattcctgatctccatgtgttgatttcgaccccttttcatcctgcctatgtcacggctgaaaggatcaagaaggcaaaaaatctacaacttctgctgacagctggaattggatcagatcatgttgatctgaaagctgctgctgctgctggattgacagtagcagaggtcactggaagcaatactgtctcagttgcggaagatgaactgatgcgaatcttaattcttgtccgaaatttcttacctggacatcatcaggttatcaatggggagtggaatgttgctgcaattgcgcacagagcttatgatttggaaggcaagactgttggaactgttggtgcaggacgtattggcagacttttactccagcgattgaagccatttaactgtaatctactttaccatgaccgtcttaagatggattctgagctagagaatcaaattggagcaaagtttgaggaagatctcgataagatgctctcgaaatgtgacatagtggtcatcaatacgcctcttacagagaaaacaaaaggaatgtttgacaaggaaagaattgcaaagttgaagaagggagttctaattgtaaacaatgctcgaggagcaattatggacactcaagcagttgttgatgcttgtaacagcggtcatattgcaggatacagtgggagatgtttggtacccacaaccagctcccaaggaccatctatggcgttacatgccaaaccaagctatgactcctcacatttctgggactaccattgatg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0236E02-u8qcS/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0236E02.1" temp_strand="+" temp_description="C02HBa0236E02.1  AC215430.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0236E02 sequenced_by:kribb upload_account_name:korea">
        <position start="66690" stop="69814"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="66986" g_stop="67021" g_length="36"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="35" r_length="35" r_score="0.750"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="67022" i_stop="67764" i_length="743">
            <donor d_prob="0.994" d_score="0.00"/>
            <acceptor a_prob="0.987" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="67765" g_stop="68305" g_length="541"/>
          <reference_exon_boundary r_type="cDNA" r_start="36" r_stop="576" r_length="541" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="68306" i_stop="69046" i_length="741">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.768" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="69047" g_stop="69171" g_length="125"/>
          <reference_exon_boundary r_type="cDNA" r_start="577" r_stop="701" r_length="125" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="69172" i_stop="69406" i_length="235">
            <donor d_prob="0.983" d_score="1.00"/>
            <acceptor a_prob="0.964" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="69407" g_stop="69513" g_length="107"/>
          <reference_exon_boundary r_type="cDNA" r_start="702" r_stop="809" r_length="108" r_score="0.981"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0236E02.1" gen_strand="+" ref_id="SGN-E261438" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>809</cumulative_length_of_scored_exons>
        <coverage percentage="0.999" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0236E02.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E261438" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="66986" e_stop="67021"/>
          <exon e_start="67765" e_stop="68305"/>
          <exon e_start="69047" e_stop="69171"/>
          <exon e_start="69407" e_stop="69513"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACATAGTCACTCCTGACAAAGAAGGACCAGATTGTGGTTAGTTCCTGCTAATCTATAATCTCTCATGTTCTATCCATTATCCCACTGAAGCCTATGCATTTCTAAAGATAATTTCTTTACCCTTCATGCTTGTACAACTAAACACATCTTAAAAGGAGTATTTTTGCATTTAAAACATGCATATATGTGCTGAAGTTTTTTAAAAATATATGGCTCACGTGAGGAGAATATAACGGTCATAGCAGGAACATTTATTTAGATAAAGAGCAAAGCAAAGTAAACAATATTTGCTTTGTTAGTGTTGGTCCTTTGCTGCTAGTGAATTATGATCAGGACATTGTGAGGTAGTTTCTTGCAGGAGGGAAAAAAAGAGTGTATTTTACCTTGATATACAGGTGTGCATTTGCAAAACGTCTATACTTCAGGACTCAGGTGTAAGTTGTACTAGTTTGATAAGACTATGGCTAAATTTTGTAATTTAAACAAGGATTTATCAAAGTCGCAGGGGCTTGTTTAGTTGTTGAGTAGAGTGCACACATGGATGCTTTAGTGATTTTCTGATGGATGACATGCTTAGTGTAAATCCTTGCTTATTAGTATCTTTTATCATGAGAAAGAATGGTGCCCTAGTCTGACACACAAACTACTCTGTGTCTTAGTTTTTCACTGTTGAATCCTTTACTATGCTCTATGCAAAGAAATTTCTCCTGAGCTAAAGTTTTTGAGTGTGTCCATCTATAATAGCTTCTTTTTTTTTTCCCATGACTTTCTCTCTGCAGAGCTTGAGAAACACATTCCTGATCTCCATGTGTTGATTTCGACCCCTTTTCATCCTGCCTATGTCACGGCTGAAAGGATCAAGAAGGCAAAAAATCTACAACTTCTGCTGACAGCTGGAATTGGATCAGATCATGTTGATCTGAAAGCTGCTGCTGCTGCTGGATTGACAGTAGCAGAGGTCACTGGAAGCAATACTGTCTCAGTTGCGGAAGATGAACTGATGCGAATCTTAATTCTTGTCCGAAATTTCTTACCTGGACATCATCAGGTTATCAATGGGGAGTGGAATGTTGCTGCAATTGCGCACAGAGCTTATGATTTGGAAGGCAAGACTGTTGGAACTGTTGGTGCAGGACGTATTGGCAGACTTTTACTCCAGCGATTGAAGCCATTTAACTGTAATCTACTTTACCATGACCGTCTTAAGATGGATTCTGAGCTAGAGAATCAAATTGGAGCAAAGTTTGAGGAAGATCTCGATAAGATGCTCTCGAAATGTGACATAGTGGTCATCAATACGCCTCTTACAGAGAAAACAAAGTAAGGTTTCTGTTTCTGTAATTACCCGTCGTAAACCTATACAATAATATTTATTGACAAAGCTTCTTATATTCAAGTTATTTTAACAATGACTTAATTATGAAATGAACTAAGTAAGCTAAAGTGAATATTCATTGAGAATGAAATATGATATTTAGCGAAGGGAAGGAGAATCTTTGGTGTCATCGTAATTTTTTGGTATCACTCTAGATCATATATAAAGTAGTTGTATATTTAGATTCCCCGATTGTATTCCCTAAGTTAAGAAATTCTCTTGAGCATCCACCATATACTATGATACATGACTTTGGCTAAGCTCAAAAAGACTATCTCAATGATGGCCCTCCATGGATTCTCCACCTATATAAGCCACGGCTAAAGAAAAATTGCTTGGCCAAGTTGTCTTTTACCTTTGGCATGATGCAAAAAACATTTGATATTCTTTCTGTGTGAACCACTGCTACGAGTAATATGTTCTTAGAGATCATGTTTTCTTTTTGTTCTTCCTTTAATTTTCTATTTGAAGATTTGTCATCAGTTAGAGGTCATCGGTAGGATGATAGATGTTCTCAGCAACTTGTGTTGCCAGAATAATATGATTGCCAATGGAGTATTTTTAAGATTCTTGGAGATGTAAGAGTTGTTTCTGTCCATACATCACTCTTCTCATGTCACTAAGGTCATTGATTGTTTCCATGTGCTATATCGCAAATTGCTCACAATTTTAACTATGTGATCCAGAGGAATGTTTGACAAGGAAAGAATTGCAAAGTTGAAGAAGGGAGTTCTAATTGTAAACAATGCTCGAGGAGCAATTATGGACACTCAAGCAGTTGTTGATGCTTGTAACAGCGGTCATATTGCAGGTATTTTAACATAACTTGAACACATCATCCAGAGATGAGCCCTCAGCCTTAATATCAATTGAACACACCATTATATTTTTTTCTTCAATTCTTGCTTGTTTCTTTTCTTCAATATATTTTATCGACATTTGGAAGTAGTTCCATATCTTGTGGAATTGCCGAATCCTTTGAAGAAAGAAGTACTTCTAAAACTATATTGAGTTCTTTTCTTTCGGTTATTTCCCCCCAAATTTAGGATACAGT-GGAGATGTTTGGTACCCACAACCAGCTCCCAAGGACCATCTATGGCGTTACATGCCAAACCAAGCTATGACTCCTCACATTTCTGGGACTACCATTGAT</genome_strand>
        <mrna_strand>CGAGACT-AGTTCTCTCAAAGAAGGACCAGATTGTG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGCTTGAGAAACACATTCCTGATCTCCATGTGTTGATTTCGACCCCTTTTCATCCTGCCTATGTCACGGCTGAAAGGATCAAGAAGGCAAAAAATCTACAACTTCTGCTGACAGCTGGAATTGGATCAGATCATGTTGATCTGAAAGCTGCTGCTGCTGCTGGATTGACAGTAGCAGAGGTCACTGGAAGCAATACTGTCTCAGTTGCGGAAGATGAACTGATGCGAATCTTAATTCTTGTCCGAAATTTCTTACCTGGACATCATCAGGTTATCAATGGGGAGTGGAATGTTGCTGCAATTGCGCACAGAGCTTATGATTTGGAAGGCAAGACTGTTGGAACTGTTGGTGCAGGACGTATTGGCAGACTTTTACTCCAGCGATTGAAGCCATTTAACTGTAATCTACTTTACCATGACCGTCTTAAGATGGATTCTGAGCTAGAGAATCAAATTGGAGCAAAGTTTGAGGAAGATCTCGATAAGATGCTCTCGAAATGTGACATAGTGGTCATCAATACGCCTCTTACAGAGAAAACAAA.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGGAATGTTTGACAAGGAAAGAATTGCAAAGTTGAAGAAGGGAGTTCTAATTGTAAACAATGCTCGAGGAGCAATTATGGACACTCAAGCAGTTGTTGATGCTTGTAACAGCGGTCATATTGCAG...........................................................................................................................................................................................................................................GATACAGTGGGAGATGTTTGGTACCCACAACCAGCTCCCAAGGACCATCTATGGCGTTACATGCCAAACCAAGCTATGACTCCTCACATTTCTGGGACTACCATTGAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0236E02-u8qcS/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E286185" ref_strand="+" ref_description="SGN-E286185 [cLES-11-E7]">
      <seq>tcactcctgacaaagaaggaccagattgtgagcttgagaaacacattcctgatctccatgtgttgatttcgaccccttttcatcctgcctatgtcacggctgaaaggatcaagaaggcaaaaaatctacaacttctgctgacagctggaattggatcagatcatgttgatctgaaagctgctgctgctgctggattgacagtagcagaggtcactggaagcaatactgtctcagttgcggaagatgaactgatgcgaatcttaattcttgtccgaaatttcttacctggacatcatcaggttatcaatggggag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0236E02-u8qcS/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0236E02.1" temp_strand="+" temp_description="C02HBa0236E02.1  AC215430.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0236E02 sequenced_by:kribb upload_account_name:korea">
        <position start="66692" stop="68348"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="66992" g_stop="67021" g_length="30"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="30" r_length="30" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="67022" i_stop="67764" i_length="743">
            <donor d_prob="0.994" d_score="0.00"/>
            <acceptor a_prob="0.987" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="67765" g_stop="68048" g_length="284"/>
          <reference_exon_boundary r_type="cDNA" r_start="31" r_stop="314" r_length="284" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0236E02.1" gen_strand="+" ref_id="SGN-E286185" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>314</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0236E02.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E286185" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="66992" e_stop="67021"/>
          <exon e_start="67765" e_stop="68048"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCACTCCTGACAAAGAAGGACCAGATTGTGGTTAGTTCCTGCTAATCTATAATCTCTCATGTTCTATCCATTATCCCACTGAAGCCTATGCATTTCTAAAGATAATTTCTTTACCCTTCATGCTTGTACAACTAAACACATCTTAAAAGGAGTATTTTTGCATTTAAAACATGCATATATGTGCTGAAGTTTTTTAAAAATATATGGCTCACGTGAGGAGAATATAACGGTCATAGCAGGAACATTTATTTAGATAAAGAGCAAAGCAAAGTAAACAATATTTGCTTTGTTAGTGTTGGTCCTTTGCTGCTAGTGAATTATGATCAGGACATTGTGAGGTAGTTTCTTGCAGGAGGGAAAAAAAGAGTGTATTTTACCTTGATATACAGGTGTGCATTTGCAAAACGTCTATACTTCAGGACTCAGGTGTAAGTTGTACTAGTTTGATAAGACTATGGCTAAATTTTGTAATTTAAACAAGGATTTATCAAAGTCGCAGGGGCTTGTTTAGTTGTTGAGTAGAGTGCACACATGGATGCTTTAGTGATTTTCTGATGGATGACATGCTTAGTGTAAATCCTTGCTTATTAGTATCTTTTATCATGAGAAAGAATGGTGCCCTAGTCTGACACACAAACTACTCTGTGTCTTAGTTTTTCACTGTTGAATCCTTTACTATGCTCTATGCAAAGAAATTTCTCCTGAGCTAAAGTTTTTGAGTGTGTCCATCTATAATAGCTTCTTTTTTTTTTCCCATGACTTTCTCTCTGCAGAGCTTGAGAAACACATTCCTGATCTCCATGTGTTGATTTCGACCCCTTTTCATCCTGCCTATGTCACGGCTGAAAGGATCAAGAAGGCAAAAAATCTACAACTTCTGCTGACAGCTGGAATTGGATCAGATCATGTTGATCTGAAAGCTGCTGCTGCTGCTGGATTGACAGTAGCAGAGGTCACTGGAAGCAATACTGTCTCAGTTGCGGAAGATGAACTGATGCGAATCTTAATTCTTGTCCGAAATTTCTTACCTGGACATCATCAGGTTATCAATGGGGAG</genome_strand>
        <mrna_strand>TCACTCCTGACAAAGAAGGACCAGATTGTG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGCTTGAGAAACACATTCCTGATCTCCATGTGTTGATTTCGACCCCTTTTCATCCTGCCTATGTCACGGCTGAAAGGATCAAGAAGGCAAAAAATCTACAACTTCTGCTGACAGCTGGAATTGGATCAGATCATGTTGATCTGAAAGCTGCTGCTGCTGCTGGATTGACAGTAGCAGAGGTCACTGGAAGCAATACTGTCTCAGTTGCGGAAGATGAACTGATGCGAATCTTAATTCTTGTCCGAAATTTCTTACCTGGACATCATCAGGTTATCAATGGGGAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0236E02-u8qcS/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E261013" ref_strand="+" ref_description="SGN-E261013 [cLEG-55-E18]">
      <seq>cctgacaaagaaggaccagattgtgagcttgagaaacacattcctgatctccatgtgttgatttcgaccccttttcatcctgcctatgtcacggctgaaaggatcaagaaggcaaaaaatctacaacttctgctgacagctggaattggatcagatcatgttgatctgaaagctgctgctgctgctggattgacagtagcagaggtcactggaagcaatactgtctcagttgcggaagatgaactgatgcgaatcttaattcttgtccgaaatttcttacctggacatcatcaggttatcaatggggagtggaatgttgctgcaattgcgcacagagcttatgatttggaaggcaagactgttggaactgttggtgcaggacgtattggcagacttttactccagcgattgaagccatttaactgtaatctactttaccatgaccgtcttaagatggattctgagctagagaatcaaattggagcaaagtttgaggaagatctcgataagatgctctcgaaatgtgacatagtggtcatcaatacgcctcttacagagaaaacaaaaggaatgtttgacaaggaaagaattgcaaagttgaagaagggagttctaattgtaaacaatgctcgaggagcaattatggacactcaagcagttgttgatgcttgtaacagcggtcatattgcaggatacagtggnagatgtttggtacccacaaccagctcccaaggaccatctatggcgttacatgccaaacccagctatgactcctcacatttctgggactaccattgatgcacagttgaggtatgcagctggaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0236E02-u8qcS/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0236E02.1" temp_strand="+" temp_description="C02HBa0236E02.1  AC215430.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0236E02 sequenced_by:kribb upload_account_name:korea">
        <position start="66697" stop="69837"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="66997" g_stop="67021" g_length="25"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="25" r_length="25" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="67022" i_stop="67764" i_length="743">
            <donor d_prob="0.994" d_score="0.00"/>
            <acceptor a_prob="0.987" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="67765" g_stop="68305" g_length="541"/>
          <reference_exon_boundary r_type="cDNA" r_start="26" r_stop="566" r_length="541" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="68306" i_stop="69046" i_length="741">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.768" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="69047" g_stop="69171" g_length="125"/>
          <reference_exon_boundary r_type="cDNA" r_start="567" r_stop="691" r_length="125" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="69172" i_stop="69406" i_length="235">
            <donor d_prob="0.983" d_score="1.00"/>
            <acceptor a_prob="0.964" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="69407" g_stop="69519" g_length="113"/>
          <reference_exon_boundary r_type="cDNA" r_start="692" r_stop="805" r_length="114" r_score="0.973"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="69520" i_stop="69630" i_length="111">
            <donor d_prob="1.000" d_score="0.98"/>
            <acceptor a_prob="0.989" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="69631" g_stop="69649" g_length="19"/>
          <reference_exon_boundary r_type="cDNA" r_start="806" r_stop="824" r_length="19" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0236E02.1" gen_strand="+" ref_id="SGN-E261013" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>823</cumulative_length_of_scored_exons>
        <coverage percentage="0.999" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0236E02.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E261013" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="66997" e_stop="67021"/>
          <exon e_start="67765" e_stop="68305"/>
          <exon e_start="69047" e_stop="69171"/>
          <exon e_start="69407" e_stop="69519"/>
          <exon e_start="69631" e_stop="69649"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCTGACAAAGAAGGACCAGATTGTGGTTAGTTCCTGCTAATCTATAATCTCTCATGTTCTATCCATTATCCCACTGAAGCCTATGCATTTCTAAAGATAATTTCTTTACCCTTCATGCTTGTACAACTAAACACATCTTAAAAGGAGTATTTTTGCATTTAAAACATGCATATATGTGCTGAAGTTTTTTAAAAATATATGGCTCACGTGAGGAGAATATAACGGTCATAGCAGGAACATTTATTTAGATAAAGAGCAAAGCAAAGTAAACAATATTTGCTTTGTTAGTGTTGGTCCTTTGCTGCTAGTGAATTATGATCAGGACATTGTGAGGTAGTTTCTTGCAGGAGGGAAAAAAAGAGTGTATTTTACCTTGATATACAGGTGTGCATTTGCAAAACGTCTATACTTCAGGACTCAGGTGTAAGTTGTACTAGTTTGATAAGACTATGGCTAAATTTTGTAATTTAAACAAGGATTTATCAAAGTCGCAGGGGCTTGTTTAGTTGTTGAGTAGAGTGCACACATGGATGCTTTAGTGATTTTCTGATGGATGACATGCTTAGTGTAAATCCTTGCTTATTAGTATCTTTTATCATGAGAAAGAATGGTGCCCTAGTCTGACACACAAACTACTCTGTGTCTTAGTTTTTCACTGTTGAATCCTTTACTATGCTCTATGCAAAGAAATTTCTCCTGAGCTAAAGTTTTTGAGTGTGTCCATCTATAATAGCTTCTTTTTTTTTTCCCATGACTTTCTCTCTGCAGAGCTTGAGAAACACATTCCTGATCTCCATGTGTTGATTTCGACCCCTTTTCATCCTGCCTATGTCACGGCTGAAAGGATCAAGAAGGCAAAAAATCTACAACTTCTGCTGACAGCTGGAATTGGATCAGATCATGTTGATCTGAAAGCTGCTGCTGCTGCTGGATTGACAGTAGCAGAGGTCACTGGAAGCAATACTGTCTCAGTTGCGGAAGATGAACTGATGCGAATCTTAATTCTTGTCCGAAATTTCTTACCTGGACATCATCAGGTTATCAATGGGGAGTGGAATGTTGCTGCAATTGCGCACAGAGCTTATGATTTGGAAGGCAAGACTGTTGGAACTGTTGGTGCAGGACGTATTGGCAGACTTTTACTCCAGCGATTGAAGCCATTTAACTGTAATCTACTTTACCATGACCGTCTTAAGATGGATTCTGAGCTAGAGAATCAAATTGGAGCAAAGTTTGAGGAAGATCTCGATAAGATGCTCTCGAAATGTGACATAGTGGTCATCAATACGCCTCTTACAGAGAAAACAAAGTAAGGTTTCTGTTTCTGTAATTACCCGTCGTAAACCTATACAATAATATTTATTGACAAAGCTTCTTATATTCAAGTTATTTTAACAATGACTTAATTATGAAATGAACTAAGTAAGCTAAAGTGAATATTCATTGAGAATGAAATATGATATTTAGCGAAGGGAAGGAGAATCTTTGGTGTCATCGTAATTTTTTGGTATCACTCTAGATCATATATAAAGTAGTTGTATATTTAGATTCCCCGATTGTATTCCCTAAGTTAAGAAATTCTCTTGAGCATCCACCATATACTATGATACATGACTTTGGCTAAGCTCAAAAAGACTATCTCAATGATGGCCCTCCATGGATTCTCCACCTATATAAGCCACGGCTAAAGAAAAATTGCTTGGCCAAGTTGTCTTTTACCTTTGGCATGATGCAAAAAACATTTGATATTCTTTCTGTGTGAACCACTGCTACGAGTAATATGTTCTTAGAGATCATGTTTTCTTTTTGTTCTTCCTTTAATTTTCTATTTGAAGATTTGTCATCAGTTAGAGGTCATCGGTAGGATGATAGATGTTCTCAGCAACTTGTGTTGCCAGAATAATATGATTGCCAATGGAGTATTTTTAAGATTCTTGGAGATGTAAGAGTTGTTTCTGTCCATACATCACTCTTCTCATGTCACTAAGGTCATTGATTGTTTCCATGTGCTATATCGCAAATTGCTCACAATTTTAACTATGTGATCCAGAGGAATGTTTGACAAGGAAAGAATTGCAAAGTTGAAGAAGGGAGTTCTAATTGTAAACAATGCTCGAGGAGCAATTATGGACACTCAAGCAGTTGTTGATGCTTGTAACAGCGGTCATATTGCAGGTATTTTAACATAACTTGAACACATCATCCAGAGATGAGCCCTCAGCCTTAATATCAATTGAACACACCATTATATTTTTTTCTTCAATTCTTGCTTGTTTCTTTTCTTCAATATATTTTATCGACATTTGGAAGTAGTTCCATATCTTGTGGAATTGCCGAATCCTTTGAAGAAAGAAGTACTTCTAAAACTATATTGAGTTCTTTTCTTTCGGTTATTTCCCCCCAAATTTAGGATACAGTGG-AGATGTTTGGTACCCACAACCAGCTCCCAAGGACCATCTATGGCGTTACATGCCAAACCAAGCTATGACTCCTCACATTTCTGGGACTACCATTGATGCACAGGTTTGTAAATACTCTGTTTCTCTAATTTCTTTAGGCTTTGCTTTTTCTTTACTTTCACGACATTATAATTGCGATTAAACTGAGAGAAGCTTGTTACTTTCAATTTCGCAGTTGAGGTATGCAGCTGGAA</genome_strand>
        <mrna_strand>CCTGACAAAGAAGGACCAGATTGTG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGCTTGAGAAACACATTCCTGATCTCCATGTGTTGATTTCGACCCCTTTTCATCCTGCCTATGTCACGGCTGAAAGGATCAAGAAGGCAAAAAATCTACAACTTCTGCTGACAGCTGGAATTGGATCAGATCATGTTGATCTGAAAGCTGCTGCTGCTGCTGGATTGACAGTAGCAGAGGTCACTGGAAGCAATACTGTCTCAGTTGCGGAAGATGAACTGATGCGAATCTTAATTCTTGTCCGAAATTTCTTACCTGGACATCATCAGGTTATCAATGGGGAGTGGAATGTTGCTGCAATTGCGCACAGAGCTTATGATTTGGAAGGCAAGACTGTTGGAACTGTTGGTGCAGGACGTATTGGCAGACTTTTACTCCAGCGATTGAAGCCATTTAACTGTAATCTACTTTACCATGACCGTCTTAAGATGGATTCTGAGCTAGAGAATCAAATTGGAGCAAAGTTTGAGGAAGATCTCGATAAGATGCTCTCGAAATGTGACATAGTGGTCATCAATACGCCTCTTACAGAGAAAACAAA.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGGAATGTTTGACAAGGAAAGAATTGCAAAGTTGAAGAAGGGAGTTCTAATTGTAAACAATGCTCGAGGAGCAATTATGGACACTCAAGCAGTTGTTGATGCTTGTAACAGCGGTCATATTGCAG...........................................................................................................................................................................................................................................GATACAGTGGNAGATGTTTGGTACCCACAACCAGCTCCCAAGGACCATCTATGGCGTTACATGCCAAACCCAGCTATGACTCCTCACATTTCTGGGACTACCATTGATGCACAG...............................................................................................................TTGAGGTATGCAGCTGGAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0236E02-u8qcS/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E255533" ref_strand="+" ref_description="SGN-E255533 [cLEG-30-B22]">
      <seq>cctgacaaagaaggaccatattgttagcttgagaaacacattcctgaggggcaggtgttgatttcaaccccttttcctcctgcctatgtcacggctgaaaggatcaagaaggcaaaaaatctacaacttctgctgacagctggaattggatcagatcatgttgatctgaaagctgctgctgctgctggattgacagtagcagaggtcactggaagcaatactgtctcagttgcggaagatgaactgatgcgaatcttaattcttgtccgaaatttcttacctggacatcatcaggttatcaatggggagtggaatgttgctgcaattgcgcacagagcttatgatttggaaggcaagactgttggaactgttggtgcaggacgtattggcagacttttactccagcgattgaagccatttaactgtaatctactttaccatgaccgtcttaagatggattctgagctagagaatcaaattggagcatagtttgaggaagatctcgataagatgctctcgaaatgtgacata</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0236E02-u8qcS/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0236E02.1" temp_strand="+" temp_description="C02HBa0236E02.1  AC215430.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0236E02 sequenced_by:kribb upload_account_name:korea">
        <position start="66697" stop="68570"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="66997" g_stop="67021" g_length="25"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="25" r_length="25" r_score="0.920"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="67022" i_stop="67764" i_length="743">
            <donor d_prob="0.994" d_score="0.00"/>
            <acceptor a_prob="0.987" a_score="0.88"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="67765" g_stop="68270" g_length="506"/>
          <reference_exon_boundary r_type="cDNA" r_start="26" r_stop="531" r_length="506" r_score="0.984"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0236E02.1" gen_strand="+" ref_id="SGN-E255533" ref_strand="+">
        <total_alignment_score>0.984</total_alignment_score>
        <cumulative_length_of_scored_exons>531</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0236E02.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E255533" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="66997" e_stop="67021"/>
          <exon e_start="67765" e_stop="68270"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCTGACAAAGAAGGACCAGATTGTGGTTAGTTCCTGCTAATCTATAATCTCTCATGTTCTATCCATTATCCCACTGAAGCCTATGCATTTCTAAAGATAATTTCTTTACCCTTCATGCTTGTACAACTAAACACATCTTAAAAGGAGTATTTTTGCATTTAAAACATGCATATATGTGCTGAAGTTTTTTAAAAATATATGGCTCACGTGAGGAGAATATAACGGTCATAGCAGGAACATTTATTTAGATAAAGAGCAAAGCAAAGTAAACAATATTTGCTTTGTTAGTGTTGGTCCTTTGCTGCTAGTGAATTATGATCAGGACATTGTGAGGTAGTTTCTTGCAGGAGGGAAAAAAAGAGTGTATTTTACCTTGATATACAGGTGTGCATTTGCAAAACGTCTATACTTCAGGACTCAGGTGTAAGTTGTACTAGTTTGATAAGACTATGGCTAAATTTTGTAATTTAAACAAGGATTTATCAAAGTCGCAGGGGCTTGTTTAGTTGTTGAGTAGAGTGCACACATGGATGCTTTAGTGATTTTCTGATGGATGACATGCTTAGTGTAAATCCTTGCTTATTAGTATCTTTTATCATGAGAAAGAATGGTGCCCTAGTCTGACACACAAACTACTCTGTGTCTTAGTTTTTCACTGTTGAATCCTTTACTATGCTCTATGCAAAGAAATTTCTCCTGAGCTAAAGTTTTTGAGTGTGTCCATCTATAATAGCTTCTTTTTTTTTTCCCATGACTTTCTCTCTGCAGAGCTTGAGAAACACATTCCTGATCTCCATGTGTTGATTTCGACCCCTTTTCATCCTGCCTATGTCACGGCTGAAAGGATCAAGAAGGCAAAAAATCTACAACTTCTGCTGACAGCTGGAATTGGATCAGATCATGTTGATCTGAAAGCTGCTGCTGCTGCTGGATTGACAGTAGCAGAGGTCACTGGAAGCAATACTGTCTCAGTTGCGGAAGATGAACTGATGCGAATCTTAATTCTTGTCCGAAATTTCTTACCTGGACATCATCAGGTTATCAATGGGGAGTGGAATGTTGCTGCAATTGCGCACAGAGCTTATGATTTGGAAGGCAAGACTGTTGGAACTGTTGGTGCAGGACGTATTGGCAGACTTTTACTCCAGCGATTGAAGCCATTTAACTGTAATCTACTTTACCATGACCGTCTTAAGATGGATTCTGAGCTAGAGAATCAAATTGGAGCAAAGTTTGAGGAAGATCTCGATAAGATGCTCTCGAAATGTGACATA</genome_strand>
        <mrna_strand>CCTGACAAAGAAGGACCATATTGTT.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGCTTGAGAAACACATTCCTGAGGGGCAGGTGTTGATTTCAACCCCTTTTCCTCCTGCCTATGTCACGGCTGAAAGGATCAAGAAGGCAAAAAATCTACAACTTCTGCTGACAGCTGGAATTGGATCAGATCATGTTGATCTGAAAGCTGCTGCTGCTGCTGGATTGACAGTAGCAGAGGTCACTGGAAGCAATACTGTCTCAGTTGCGGAAGATGAACTGATGCGAATCTTAATTCTTGTCCGAAATTTCTTACCTGGACATCATCAGGTTATCAATGGGGAGTGGAATGTTGCTGCAATTGCGCACAGAGCTTATGATTTGGAAGGCAAGACTGTTGGAACTGTTGGTGCAGGACGTATTGGCAGACTTTTACTCCAGCGATTGAAGCCATTTAACTGTAATCTACTTTACCATGACCGTCTTAAGATGGATTCTGAGCTAGAGAATCAAATTGGAGCATAGTTTGAGGAAGATCTCGATAAGATGCTCTCGAAATGTGACATA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0236E02-u8qcS/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E404059" ref_strand="+" ref_description="SGN-E404059 [PPC-12-F7]">
      <seq>caaagaaggaccagattgtgagcttgagaaacacattcctgatctccatgtgttgatttcgaccccttttcatcctgcctatgtcacggctgaaaggatcaagaaggcaaaaaatctacaactactgctgacagctggaattggatcagatcatgttgatctgaaagctgctgctgctgctggattgacagtggcagaagtcactggaagcaatactgtctcagttgcggaagatgaactgatgcgaatcttaattcttgtccgaaatttcttgcctggacatcatcaggttatcaatggggagtggaatgttgctgcaattgcgcacagagcttatgatttggaaggcaagactgttggaactgttggtgcaggacgtattggcagacttttactccaacgattgaagccatttaactgtaatctactttaccatgaccgtcttaagatggattctgagctagagaatcaaattggagcaaagttcgaggaagatctcgataaaatgctctcgaaatgtgacatagtggtcatcaatacgcctcttacagagaaaacaaaaggaatgtttg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0236E02-u8qcS/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0236E02.1" temp_strand="+" temp_description="C02HBa0236E02.1  AC215430.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0236E02 sequenced_by:kribb upload_account_name:korea">
        <position start="66702" stop="68614"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="67002" g_stop="67021" g_length="20"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="20" r_length="20" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="67022" i_stop="67764" i_length="743">
            <donor d_prob="0.994" d_score="0.00"/>
            <acceptor a_prob="0.987" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="67765" g_stop="68305" g_length="541"/>
          <reference_exon_boundary r_type="cDNA" r_start="21" r_stop="561" r_length="541" r_score="0.987"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0236E02.1" gen_strand="+" ref_id="SGN-E404059" ref_strand="+">
        <total_alignment_score>0.987</total_alignment_score>
        <cumulative_length_of_scored_exons>561</cumulative_length_of_scored_exons>
        <coverage percentage="0.981" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0236E02.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E404059" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="67002" e_stop="67021"/>
          <exon e_start="67765" e_stop="68305"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAAAGAAGGACCAGATTGTGGTTAGTTCCTGCTAATCTATAATCTCTCATGTTCTATCCATTATCCCACTGAAGCCTATGCATTTCTAAAGATAATTTCTTTACCCTTCATGCTTGTACAACTAAACACATCTTAAAAGGAGTATTTTTGCATTTAAAACATGCATATATGTGCTGAAGTTTTTTAAAAATATATGGCTCACGTGAGGAGAATATAACGGTCATAGCAGGAACATTTATTTAGATAAAGAGCAAAGCAAAGTAAACAATATTTGCTTTGTTAGTGTTGGTCCTTTGCTGCTAGTGAATTATGATCAGGACATTGTGAGGTAGTTTCTTGCAGGAGGGAAAAAAAGAGTGTATTTTACCTTGATATACAGGTGTGCATTTGCAAAACGTCTATACTTCAGGACTCAGGTGTAAGTTGTACTAGTTTGATAAGACTATGGCTAAATTTTGTAATTTAAACAAGGATTTATCAAAGTCGCAGGGGCTTGTTTAGTTGTTGAGTAGAGTGCACACATGGATGCTTTAGTGATTTTCTGATGGATGACATGCTTAGTGTAAATCCTTGCTTATTAGTATCTTTTATCATGAGAAAGAATGGTGCCCTAGTCTGACACACAAACTACTCTGTGTCTTAGTTTTTCACTGTTGAATCCTTTACTATGCTCTATGCAAAGAAATTTCTCCTGAGCTAAAGTTTTTGAGTGTGTCCATCTATAATAGCTTCTTTTTTTTTTCCCATGACTTTCTCTCTGCAGAGCTTGAGAAACACATTCCTGATCTCCATGTGTTGATTTCGACCCCTTTTCATCCTGCCTATGTCACGGCTGAAAGGATCAAGAAGGCAAAAAATCTACAACTTCTGCTGACAGCTGGAATTGGATCAGATCATGTTGATCTGAAAGCTGCTGCTGCTGCTGGATTGACAGTAGCAGAGGTCACTGGAAGCAATACTGTCTCAGTTGCGGAAGATGAACTGATGCGAATCTTAATTCTTGTCCGAAATTTCTTACCTGGACATCATCAGGTTATCAATGGGGAGTGGAATGTTGCTGCAATTGCGCACAGAGCTTATGATTTGGAAGGCAAGACTGTTGGAACTGTTGGTGCAGGACGTATTGGCAGACTTTTACTCCAGCGATTGAAGCCATTTAACTGTAATCTACTTTACCATGACCGTCTTAAGATGGATTCTGAGCTAGAGAATCAAATTGGAGCAAAGTTTGAGGAAGATCTCGATAAGATGCTCTCGAAATGTGACATAGTGGTCATCAATACGCCTCTTACAGAGAAAACAAA</genome_strand>
        <mrna_strand>CAAAGAAGGACCAGATTGTG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGCTTGAGAAACACATTCCTGATCTCCATGTGTTGATTTCGACCCCTTTTCATCCTGCCTATGTCACGGCTGAAAGGATCAAGAAGGCAAAAAATCTACAACTACTGCTGACAGCTGGAATTGGATCAGATCATGTTGATCTGAAAGCTGCTGCTGCTGCTGGATTGACAGTGGCAGAAGTCACTGGAAGCAATACTGTCTCAGTTGCGGAAGATGAACTGATGCGAATCTTAATTCTTGTCCGAAATTTCTTGCCTGGACATCATCAGGTTATCAATGGGGAGTGGAATGTTGCTGCAATTGCGCACAGAGCTTATGATTTGGAAGGCAAGACTGTTGGAACTGTTGGTGCAGGACGTATTGGCAGACTTTTACTCCAACGATTGAAGCCATTTAACTGTAATCTACTTTACCATGACCGTCTTAAGATGGATTCTGAGCTAGAGAATCAAATTGGAGCAAAGTTCGAGGAAGATCTCGATAAAATGCTCTCGAAATGTGACATAGTGGTCATCAATACGCCTCTTACAGAGAAAACAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0236E02-u8qcS/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E239941" ref_strand="+" ref_description="SGN-E239941 [cLED-29-B3]">
      <seq>gagcttgagaaacacattcctgatctccatgtgttgagttcgaccccttttcatcctgcctatgtcacggctgaaaggatcaagaaggcaaaaaatctacaacttctgctgacagctggaattggatcacatcatgttgatctgaaagctgctgctgctgctggattgacagtagcagaggtcactggaagcaatactgtctcaggtgcggaagatgaactgatgcgaatct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0236E02-u8qcS/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0236E02.1" temp_strand="+" temp_description="C02HBa0236E02.1  AC215430.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0236E02 sequenced_by:kribb upload_account_name:korea">
        <position start="67464" stop="68295"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="67764" g_stop="67995" g_length="232"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="232" r_length="232" r_score="0.987"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0236E02.1" gen_strand="+" ref_id="SGN-E239941" ref_strand="+">
        <total_alignment_score>0.987</total_alignment_score>
        <cumulative_length_of_scored_exons>232</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0236E02.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E239941" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="67764" e_stop="67995"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAGCTTGAGAAACACATTCCTGATCTCCATGTGTTGATTTCGACCCCTTTTCATCCTGCCTATGTCACGGCTGAAAGGATCAAGAAGGCAAAAAATCTACAACTTCTGCTGACAGCTGGAATTGGATCAGATCATGTTGATCTGAAAGCTGCTGCTGCTGCTGGATTGACAGTAGCAGAGGTCACTGGAAGCAATACTGTCTCAGTTGCGGAAGATGAACTGATGCGAATCT</genome_strand>
        <mrna_strand>GAGCTTGAGAAACACATTCCTGATCTCCATGTGTTGAGTTCGACCCCTTTTCATCCTGCCTATGTCACGGCTGAAAGGATCAAGAAGGCAAAAAATCTACAACTTCTGCTGACAGCTGGAATTGGATCACATCATGTTGATCTGAAAGCTGCTGCTGCTGCTGGATTGACAGTAGCAGAGGTCACTGGAAGCAATACTGTCTCAGGTGCGGAAGATGAACTGATGCGAATCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0236E02-u8qcS/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E560184" ref_strand="+" ref_description="SGN-E560184 [19799]">
      <seq>cagattgtgagcttgagaaacacattcctgatctccatgtgttgatttcgaccccttttcatcctgcctatgtcacggctgaaaggatcaagaaggcaaaaaatctacaactactgctgacagctggaattggatcagatcatgttgatctgaaagctgctgctgctgctggattgacagtagcagaggtcactggaagcaatactgtctcagttgcggaagatgaactgatgcgaatcttaattcttgtccgaaatttcttgcctggacatcatcaggttatcaatggggagtggaatgttgctgcaattgcgcacagagcttatgatttggaaggcaagactgttggaactgttggtgcaggacgtattggcagacttttactccaacgattgaagccatttaactgtaatctactttaccatgaccgtcttaagatggattctgagctagagaatcaaattggagcaaagttcgaggaagatctcgataagatgctctcgaaatgtgacatagtggtcatcaatacgcctcttacagagaaaacaaaaggaatgtttgacaaggaaagaattgcaaagttgaagaagggagttctaattgtaaacaatgctcgaggagcaattatgg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0236E02-u8qcS/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0236E02.1" temp_strand="+" temp_description="C02HBa0236E02.1  AC215430.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0236E02 sequenced_by:kribb upload_account_name:korea">
        <position start="67464" stop="69426"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="67765" g_stop="68305" g_length="541"/>
          <reference_exon_boundary r_type="cDNA" r_start="10" r_stop="550" r_length="541" r_score="0.993"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="68306" i_stop="69046" i_length="741">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.768" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="69047" g_stop="69126" g_length="80"/>
          <reference_exon_boundary r_type="cDNA" r_start="551" r_stop="630" r_length="80" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0236E02.1" gen_strand="+" ref_id="SGN-E560184" ref_strand="+">
        <total_alignment_score>0.994</total_alignment_score>
        <cumulative_length_of_scored_exons>621</cumulative_length_of_scored_exons>
        <coverage percentage="0.986" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0236E02.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E560184" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="67765" e_stop="68305"/>
          <exon e_start="69047" e_stop="69126"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGCTTGAGAAACACATTCCTGATCTCCATGTGTTGATTTCGACCCCTTTTCATCCTGCCTATGTCACGGCTGAAAGGATCAAGAAGGCAAAAAATCTACAACTTCTGCTGACAGCTGGAATTGGATCAGATCATGTTGATCTGAAAGCTGCTGCTGCTGCTGGATTGACAGTAGCAGAGGTCACTGGAAGCAATACTGTCTCAGTTGCGGAAGATGAACTGATGCGAATCTTAATTCTTGTCCGAAATTTCTTACCTGGACATCATCAGGTTATCAATGGGGAGTGGAATGTTGCTGCAATTGCGCACAGAGCTTATGATTTGGAAGGCAAGACTGTTGGAACTGTTGGTGCAGGACGTATTGGCAGACTTTTACTCCAGCGATTGAAGCCATTTAACTGTAATCTACTTTACCATGACCGTCTTAAGATGGATTCTGAGCTAGAGAATCAAATTGGAGCAAAGTTTGAGGAAGATCTCGATAAGATGCTCTCGAAATGTGACATAGTGGTCATCAATACGCCTCTTACAGAGAAAACAAAGTAAGGTTTCTGTTTCTGTAATTACCCGTCGTAAACCTATACAATAATATTTATTGACAAAGCTTCTTATATTCAAGTTATTTTAACAATGACTTAATTATGAAATGAACTAAGTAAGCTAAAGTGAATATTCATTGAGAATGAAATATGATATTTAGCGAAGGGAAGGAGAATCTTTGGTGTCATCGTAATTTTTTGGTATCACTCTAGATCATATATAAAGTAGTTGTATATTTAGATTCCCCGATTGTATTCCCTAAGTTAAGAAATTCTCTTGAGCATCCACCATATACTATGATACATGACTTTGGCTAAGCTCAAAAAGACTATCTCAATGATGGCCCTCCATGGATTCTCCACCTATATAAGCCACGGCTAAAGAAAAATTGCTTGGCCAAGTTGTCTTTTACCTTTGGCATGATGCAAAAAACATTTGATATTCTTTCTGTGTGAACCACTGCTACGAGTAATATGTTCTTAGAGATCATGTTTTCTTTTTGTTCTTCCTTTAATTTTCTATTTGAAGATTTGTCATCAGTTAGAGGTCATCGGTAGGATGATAGATGTTCTCAGCAACTTGTGTTGCCAGAATAATATGATTGCCAATGGAGTATTTTTAAGATTCTTGGAGATGTAAGAGTTGTTTCTGTCCATACATCACTCTTCTCATGTCACTAAGGTCATTGATTGTTTCCATGTGCTATATCGCAAATTGCTCACAATTTTAACTATGTGATCCAGAGGAATGTTTGACAAGGAAAGAATTGCAAAGTTGAAGAAGGGAGTTCTAATTGTAAACAATGCTCGAGGAGCAATTATGG</genome_strand>
        <mrna_strand>AGCTTGAGAAACACATTCCTGATCTCCATGTGTTGATTTCGACCCCTTTTCATCCTGCCTATGTCACGGCTGAAAGGATCAAGAAGGCAAAAAATCTACAACTACTGCTGACAGCTGGAATTGGATCAGATCATGTTGATCTGAAAGCTGCTGCTGCTGCTGGATTGACAGTAGCAGAGGTCACTGGAAGCAATACTGTCTCAGTTGCGGAAGATGAACTGATGCGAATCTTAATTCTTGTCCGAAATTTCTTGCCTGGACATCATCAGGTTATCAATGGGGAGTGGAATGTTGCTGCAATTGCGCACAGAGCTTATGATTTGGAAGGCAAGACTGTTGGAACTGTTGGTGCAGGACGTATTGGCAGACTTTTACTCCAACGATTGAAGCCATTTAACTGTAATCTACTTTACCATGACCGTCTTAAGATGGATTCTGAGCTAGAGAATCAAATTGGAGCAAAGTTCGAGGAAGATCTCGATAAGATGCTCTCGAAATGTGACATAGTGGTCATCAATACGCCTCTTACAGAGAAAACAAA.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGGAATGTTTGACAAGGAAAGAATTGCAAAGTTGAAGAAGGGAGTTCTAATTGTAAACAATGCTCGAGGAGCAATTATGG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0236E02-u8qcS/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E332612" ref_strand="+" ref_description="SGN-E332612 [cTOD-18-D19]">
      <seq>tcacggctgaaaggatcaagaaggcaaaaaatctacaacttctgctgacagctggaattggatcagatcatgttgatctgaaagctgctgctgctgctggattgacagtagcagaggtcactggaagcaatactgtctcagttgcggaagatgaactgatgcgaatcttaattcttgtccgaaatttcttacctggacatcatcaggttatcaatggggagtggaatgttgctgcaattgcgcacagagcttatgatttggaaggcaagactgttggaactgttggtgcaggacgtattggcagacttttactccagcgattgaagccatttaactgtaatctactttaccatgaccgtcttaagatggattctgagctagagaatcaaattggagcaaagtttgaggaagatctcgataagatgctctcgaaatgtgacatagtggtcatcaatacgcctcttacagagaaaacaaaaggaatgtttgacaaggaaagaattgcaaagttgaagaagggagttctaattgtaaacaatgctcgaggagcaattatggacactcaagcagttgttgatgcttgtaacagcggtcatattgcaggatacagtggagatgtttggtacccacaaccagctcccaaggaccatctatggcgttacatgccaaaccaagctatgactcctcacatttctgggactaccattgatgcacagttgaggtatgcagctggaacaaagatatgttgg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0236E02-u8qcS/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0236E02.1" temp_strand="+" temp_description="C02HBa0236E02.1  AC215430.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0236E02 sequenced_by:kribb upload_account_name:korea">
        <position start="67528" stop="69964"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="67828" g_stop="68305" g_length="478"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="478" r_length="478" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="68306" i_stop="69046" i_length="741">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.768" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="69047" g_stop="69171" g_length="125"/>
          <reference_exon_boundary r_type="cDNA" r_start="479" r_stop="603" r_length="125" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="69172" i_stop="69406" i_length="235">
            <donor d_prob="0.983" d_score="1.00"/>
            <acceptor a_prob="0.964" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="69407" g_stop="69519" g_length="113"/>
          <reference_exon_boundary r_type="cDNA" r_start="604" r_stop="716" r_length="113" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="69520" i_stop="69630" i_length="111">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.989" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="69631" g_stop="69664" g_length="34"/>
          <reference_exon_boundary r_type="cDNA" r_start="717" r_stop="749" r_length="33" r_score="0.971"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0236E02.1" gen_strand="+" ref_id="SGN-E332612" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>750</cumulative_length_of_scored_exons>
        <coverage percentage="1.001" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0236E02.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E332612" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="67828" e_stop="68305"/>
          <exon e_start="69047" e_stop="69171"/>
          <exon e_start="69407" e_stop="69519"/>
          <exon e_start="69631" e_stop="69664"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCACGGCTGAAAGGATCAAGAAGGCAAAAAATCTACAACTTCTGCTGACAGCTGGAATTGGATCAGATCATGTTGATCTGAAAGCTGCTGCTGCTGCTGGATTGACAGTAGCAGAGGTCACTGGAAGCAATACTGTCTCAGTTGCGGAAGATGAACTGATGCGAATCTTAATTCTTGTCCGAAATTTCTTACCTGGACATCATCAGGTTATCAATGGGGAGTGGAATGTTGCTGCAATTGCGCACAGAGCTTATGATTTGGAAGGCAAGACTGTTGGAACTGTTGGTGCAGGACGTATTGGCAGACTTTTACTCCAGCGATTGAAGCCATTTAACTGTAATCTACTTTACCATGACCGTCTTAAGATGGATTCTGAGCTAGAGAATCAAATTGGAGCAAAGTTTGAGGAAGATCTCGATAAGATGCTCTCGAAATGTGACATAGTGGTCATCAATACGCCTCTTACAGAGAAAACAAAGTAAGGTTTCTGTTTCTGTAATTACCCGTCGTAAACCTATACAATAATATTTATTGACAAAGCTTCTTATATTCAAGTTATTTTAACAATGACTTAATTATGAAATGAACTAAGTAAGCTAAAGTGAATATTCATTGAGAATGAAATATGATATTTAGCGAAGGGAAGGAGAATCTTTGGTGTCATCGTAATTTTTTGGTATCACTCTAGATCATATATAAAGTAGTTGTATATTTAGATTCCCCGATTGTATTCCCTAAGTTAAGAAATTCTCTTGAGCATCCACCATATACTATGATACATGACTTTGGCTAAGCTCAAAAAGACTATCTCAATGATGGCCCTCCATGGATTCTCCACCTATATAAGCCACGGCTAAAGAAAAATTGCTTGGCCAAGTTGTCTTTTACCTTTGGCATGATGCAAAAAACATTTGATATTCTTTCTGTGTGAACCACTGCTACGAGTAATATGTTCTTAGAGATCATGTTTTCTTTTTGTTCTTCCTTTAATTTTCTATTTGAAGATTTGTCATCAGTTAGAGGTCATCGGTAGGATGATAGATGTTCTCAGCAACTTGTGTTGCCAGAATAATATGATTGCCAATGGAGTATTTTTAAGATTCTTGGAGATGTAAGAGTTGTTTCTGTCCATACATCACTCTTCTCATGTCACTAAGGTCATTGATTGTTTCCATGTGCTATATCGCAAATTGCTCACAATTTTAACTATGTGATCCAGAGGAATGTTTGACAAGGAAAGAATTGCAAAGTTGAAGAAGGGAGTTCTAATTGTAAACAATGCTCGAGGAGCAATTATGGACACTCAAGCAGTTGTTGATGCTTGTAACAGCGGTCATATTGCAGGTATTTTAACATAACTTGAACACATCATCCAGAGATGAGCCCTCAGCCTTAATATCAATTGAACACACCATTATATTTTTTTCTTCAATTCTTGCTTGTTTCTTTTCTTCAATATATTTTATCGACATTTGGAAGTAGTTCCATATCTTGTGGAATTGCCGAATCCTTTGAAGAAAGAAGTACTTCTAAAACTATATTGAGTTCTTTTCTTTCGGTTATTTCCCCCCAAATTTAGGATACAGTGGAGATGTTTGGTACCCACAACCAGCTCCCAAGGACCATCTATGGCGTTACATGCCAAACCAAGCTATGACTCCTCACATTTCTGGGACTACCATTGATGCACAGGTTTGTAAATACTCTGTTTCTCTAATTTCTTTAGGCTTTGCTTTTTCTTTACTTTCACGACATTATAATTGCGATTAAACTGAGAGAAGCTTGTTACTTTCAATTTCGCAGTTGAGGTATGCAGCTGGAACAAAGGATATGTTGG</genome_strand>
        <mrna_strand>TCACGGCTGAAAGGATCAAGAAGGCAAAAAATCTACAACTTCTGCTGACAGCTGGAATTGGATCAGATCATGTTGATCTGAAAGCTGCTGCTGCTGCTGGATTGACAGTAGCAGAGGTCACTGGAAGCAATACTGTCTCAGTTGCGGAAGATGAACTGATGCGAATCTTAATTCTTGTCCGAAATTTCTTACCTGGACATCATCAGGTTATCAATGGGGAGTGGAATGTTGCTGCAATTGCGCACAGAGCTTATGATTTGGAAGGCAAGACTGTTGGAACTGTTGGTGCAGGACGTATTGGCAGACTTTTACTCCAGCGATTGAAGCCATTTAACTGTAATCTACTTTACCATGACCGTCTTAAGATGGATTCTGAGCTAGAGAATCAAATTGGAGCAAAGTTTGAGGAAGATCTCGATAAGATGCTCTCGAAATGTGACATAGTGGTCATCAATACGCCTCTTACAGAGAAAACAAA.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGGAATGTTTGACAAGGAAAGAATTGCAAAGTTGAAGAAGGGAGTTCTAATTGTAAACAATGCTCGAGGAGCAATTATGGACACTCAAGCAGTTGTTGATGCTTGTAACAGCGGTCATATTGCAG...........................................................................................................................................................................................................................................GATACAGTGGAGATGTTTGGTACCCACAACCAGCTCCCAAGGACCATCTATGGCGTTACATGCCAAACCAAGCTATGACTCCTCACATTTCTGGGACTACCATTGATGCACAG...............................................................................................................TTGAGGTATGCAGCTGGAACAAA-GATATGTTGG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0236E02-u8qcS/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E206669" ref_strand="+" ref_description="SGN-E206669 [cLEC-31-L12]">
      <seq>gaaggcaaaaaatctacaacttctgctgacagctggaattggatcagatcatgttgatctgaaagctgctgctgctgctggattgacagtagcagaggtcactggaagcaatactgtctcagttgcggaagatgaactgatgcgaatcttaattcttgtccgaaatttcttacctggacatcatcaggttatcaatggggagtggaatgttgctgcaattgcgcacagagcttatgatttggaaggcaagactgttggaactgttggtgcaggacgtattggcagacttttactccagcgattgaagccatttaactgtaatctactttaccatgaccgtcttaagatggattctgagctagagaatcaaattggagcaaagtttgaggaagatctcgataagatgctctcgaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0236E02-u8qcS/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0236E02.1" temp_strand="+" temp_description="C02HBa0236E02.1  AC215430.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0236E02 sequenced_by:kribb upload_account_name:korea">
        <position start="67547" stop="68560"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="67847" g_stop="68260" g_length="414"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="414" r_length="414" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0236E02.1" gen_strand="+" ref_id="SGN-E206669" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>414</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0236E02.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E206669" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="67847" e_stop="68260"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAAGGCAAAAAATCTACAACTTCTGCTGACAGCTGGAATTGGATCAGATCATGTTGATCTGAAAGCTGCTGCTGCTGCTGGATTGACAGTAGCAGAGGTCACTGGAAGCAATACTGTCTCAGTTGCGGAAGATGAACTGATGCGAATCTTAATTCTTGTCCGAAATTTCTTACCTGGACATCATCAGGTTATCAATGGGGAGTGGAATGTTGCTGCAATTGCGCACAGAGCTTATGATTTGGAAGGCAAGACTGTTGGAACTGTTGGTGCAGGACGTATTGGCAGACTTTTACTCCAGCGATTGAAGCCATTTAACTGTAATCTACTTTACCATGACCGTCTTAAGATGGATTCTGAGCTAGAGAATCAAATTGGAGCAAAGTTTGAGGAAGATCTCGATAAGATGCTCTCGAA</genome_strand>
        <mrna_strand>GAAGGCAAAAAATCTACAACTTCTGCTGACAGCTGGAATTGGATCAGATCATGTTGATCTGAAAGCTGCTGCTGCTGCTGGATTGACAGTAGCAGAGGTCACTGGAAGCAATACTGTCTCAGTTGCGGAAGATGAACTGATGCGAATCTTAATTCTTGTCCGAAATTTCTTACCTGGACATCATCAGGTTATCAATGGGGAGTGGAATGTTGCTGCAATTGCGCACAGAGCTTATGATTTGGAAGGCAAGACTGTTGGAACTGTTGGTGCAGGACGTATTGGCAGACTTTTACTCCAGCGATTGAAGCCATTTAACTGTAATCTACTTTACCATGACCGTCTTAAGATGGATTCTGAGCTAGAGAATCAAATTGGAGCAAAGTTTGAGGAAGATCTCGATAAGATGCTCTCGAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0236E02-u8qcS/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E261870" ref_strand="+" ref_description="SGN-E261870 [cLEG-61-P13]">
      <seq>aaggcaaaaatctacaacttctgctgacagctggaattggatcagatcatgttgatctgaaagctgctgctgctgctggattgacagtagcagaggtcactggaagcaatactgtctcagttgcggaagatgaactgatgcgaatcttaattcttgtccgaaatttcttacctggacatcatcaggttatcaatggggagtggaatgttgctgcaattgcgcacagagcttatgatttggaaggcaagactgttggaactgttggtgcaggacgtattggcagacttttactccagcgattgaagccatttaactgtaatctactttaccatgaccgtcttaagatggattctgagctagagaatcaaattggagcaaagtttgaggaagatctcgataagatgctctcgaaatgtgacatagtggtcatcaatacgcctcttacagagaaaacaaaaggaatgtttgacaaggaaagaattgcaaagttgaagaagggagttctaattgtaaacaatgctcgaggagcaattatggacactcaagcagttgttgatgcttgtaacagcggtcatattgcaggatacagtgggagatgtttggtacccacaaccagctcccaaggaccatctatggcgttacatgccaaaccaagctatgactcctcacatttctgggactaccattgatgcacagttgaggtatgcagctggaacaaaggatatgttgg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0236E02-u8qcS/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0236E02.1" temp_strand="+" temp_description="C02HBa0236E02.1  AC215430.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0236E02 sequenced_by:kribb upload_account_name:korea">
        <position start="67548" stop="69964"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="67848" g_stop="68305" g_length="458"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="457" r_length="457" r_score="0.998"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="68306" i_stop="69046" i_length="741">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.768" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="69047" g_stop="69171" g_length="125"/>
          <reference_exon_boundary r_type="cDNA" r_start="458" r_stop="582" r_length="125" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="69172" i_stop="69406" i_length="235">
            <donor d_prob="0.983" d_score="1.00"/>
            <acceptor a_prob="0.964" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="69407" g_stop="69519" g_length="113"/>
          <reference_exon_boundary r_type="cDNA" r_start="583" r_stop="696" r_length="114" r_score="0.982"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="69520" i_stop="69630" i_length="111">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.989" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="69631" g_stop="69664" g_length="34"/>
          <reference_exon_boundary r_type="cDNA" r_start="697" r_stop="730" r_length="34" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0236E02.1" gen_strand="+" ref_id="SGN-E261870" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>730</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0236E02.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E261870" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="67848" e_stop="68305"/>
          <exon e_start="69047" e_stop="69171"/>
          <exon e_start="69407" e_stop="69519"/>
          <exon e_start="69631" e_stop="69664"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAGGCAAAAAATCTACAACTTCTGCTGACAGCTGGAATTGGATCAGATCATGTTGATCTGAAAGCTGCTGCTGCTGCTGGATTGACAGTAGCAGAGGTCACTGGAAGCAATACTGTCTCAGTTGCGGAAGATGAACTGATGCGAATCTTAATTCTTGTCCGAAATTTCTTACCTGGACATCATCAGGTTATCAATGGGGAGTGGAATGTTGCTGCAATTGCGCACAGAGCTTATGATTTGGAAGGCAAGACTGTTGGAACTGTTGGTGCAGGACGTATTGGCAGACTTTTACTCCAGCGATTGAAGCCATTTAACTGTAATCTACTTTACCATGACCGTCTTAAGATGGATTCTGAGCTAGAGAATCAAATTGGAGCAAAGTTTGAGGAAGATCTCGATAAGATGCTCTCGAAATGTGACATAGTGGTCATCAATACGCCTCTTACAGAGAAAACAAAGTAAGGTTTCTGTTTCTGTAATTACCCGTCGTAAACCTATACAATAATATTTATTGACAAAGCTTCTTATATTCAAGTTATTTTAACAATGACTTAATTATGAAATGAACTAAGTAAGCTAAAGTGAATATTCATTGAGAATGAAATATGATATTTAGCGAAGGGAAGGAGAATCTTTGGTGTCATCGTAATTTTTTGGTATCACTCTAGATCATATATAAAGTAGTTGTATATTTAGATTCCCCGATTGTATTCCCTAAGTTAAGAAATTCTCTTGAGCATCCACCATATACTATGATACATGACTTTGGCTAAGCTCAAAAAGACTATCTCAATGATGGCCCTCCATGGATTCTCCACCTATATAAGCCACGGCTAAAGAAAAATTGCTTGGCCAAGTTGTCTTTTACCTTTGGCATGATGCAAAAAACATTTGATATTCTTTCTGTGTGAACCACTGCTACGAGTAATATGTTCTTAGAGATCATGTTTTCTTTTTGTTCTTCCTTTAATTTTCTATTTGAAGATTTGTCATCAGTTAGAGGTCATCGGTAGGATGATAGATGTTCTCAGCAACTTGTGTTGCCAGAATAATATGATTGCCAATGGAGTATTTTTAAGATTCTTGGAGATGTAAGAGTTGTTTCTGTCCATACATCACTCTTCTCATGTCACTAAGGTCATTGATTGTTTCCATGTGCTATATCGCAAATTGCTCACAATTTTAACTATGTGATCCAGAGGAATGTTTGACAAGGAAAGAATTGCAAAGTTGAAGAAGGGAGTTCTAATTGTAAACAATGCTCGAGGAGCAATTATGGACACTCAAGCAGTTGTTGATGCTTGTAACAGCGGTCATATTGCAGGTATTTTAACATAACTTGAACACATCATCCAGAGATGAGCCCTCAGCCTTAATATCAATTGAACACACCATTATATTTTTTTCTTCAATTCTTGCTTGTTTCTTTTCTTCAATATATTTTATCGACATTTGGAAGTAGTTCCATATCTTGTGGAATTGCCGAATCCTTTGAAGAAAGAAGTACTTCTAAAACTATATTGAGTTCTTTTCTTTCGGTTATTTCCCCCCAAATTTAGGATACAGT-GGAGATGTTTGGTACCCACAACCAGCTCCCAAGGACCATCTATGGCGTTACATGCCAAACCAAGCTATGACTCCTCACATTTCTGGGACTACCATTGATGCACAGGTTTGTAAATACTCTGTTTCTCTAATTTCTTTAGGCTTTGCTTTTTCTTTACTTTCACGACATTATAATTGCGATTAAACTGAGAGAAGCTTGTTACTTTCAATTTCGCAGTTGAGGTATGCAGCTGGAACAAAGGATATGTTGG</genome_strand>
        <mrna_strand>AAGGC-AAAAATCTACAACTTCTGCTGACAGCTGGAATTGGATCAGATCATGTTGATCTGAAAGCTGCTGCTGCTGCTGGATTGACAGTAGCAGAGGTCACTGGAAGCAATACTGTCTCAGTTGCGGAAGATGAACTGATGCGAATCTTAATTCTTGTCCGAAATTTCTTACCTGGACATCATCAGGTTATCAATGGGGAGTGGAATGTTGCTGCAATTGCGCACAGAGCTTATGATTTGGAAGGCAAGACTGTTGGAACTGTTGGTGCAGGACGTATTGGCAGACTTTTACTCCAGCGATTGAAGCCATTTAACTGTAATCTACTTTACCATGACCGTCTTAAGATGGATTCTGAGCTAGAGAATCAAATTGGAGCAAAGTTTGAGGAAGATCTCGATAAGATGCTCTCGAAATGTGACATAGTGGTCATCAATACGCCTCTTACAGAGAAAACAAA.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGGAATGTTTGACAAGGAAAGAATTGCAAAGTTGAAGAAGGGAGTTCTAATTGTAAACAATGCTCGAGGAGCAATTATGGACACTCAAGCAGTTGTTGATGCTTGTAACAGCGGTCATATTGCAG...........................................................................................................................................................................................................................................GATACAGTGGGAGATGTTTGGTACCCACAACCAGCTCCCAAGGACCATCTATGGCGTTACATGCCAAACCAAGCTATGACTCCTCACATTTCTGGGACTACCATTGATGCACAG...............................................................................................................TTGAGGTATGCAGCTGGAACAAAGGATATGTTGG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0236E02-u8qcS/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E258818" ref_strand="+" ref_description="SGN-E258818 [cLEG-50-H8]">
      <seq>aaggcaaaaaatctacaacttctgctgacagctggaattggatcagatcatgttgatctgaaagctgctgctgctgctggattgacagtagcagaggtcactggaagcaatactgtctcagttgcggaagatgaactgatgcgaatcttaattcttgtccgaaatttcttacctggacatcatcaggttatcaatggggagtggaatgttgctgcaattgcgcacagagcttatgatttggaaggcaagactgttggaactgttggtgcaggacgtattggcagacttttactccagcgattgaagccatttaactgtaatctactttaccatgaccgtcttaagatggattctgagctagagaatcaaattggagcaaagtttgaggaagatctcgataagatgctctcgaaatgtgacatagtggtcatcaatacgcctcttacagagaaaacaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0236E02-u8qcS/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0236E02.1" temp_strand="+" temp_description="C02HBa0236E02.1  AC215430.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0236E02 sequenced_by:kribb upload_account_name:korea">
        <position start="67548" stop="68605"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="67848" g_stop="68305" g_length="458"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="458" r_length="458" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0236E02.1" gen_strand="+" ref_id="SGN-E258818" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>458</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0236E02.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E258818" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="67848" e_stop="68305"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAGGCAAAAAATCTACAACTTCTGCTGACAGCTGGAATTGGATCAGATCATGTTGATCTGAAAGCTGCTGCTGCTGCTGGATTGACAGTAGCAGAGGTCACTGGAAGCAATACTGTCTCAGTTGCGGAAGATGAACTGATGCGAATCTTAATTCTTGTCCGAAATTTCTTACCTGGACATCATCAGGTTATCAATGGGGAGTGGAATGTTGCTGCAATTGCGCACAGAGCTTATGATTTGGAAGGCAAGACTGTTGGAACTGTTGGTGCAGGACGTATTGGCAGACTTTTACTCCAGCGATTGAAGCCATTTAACTGTAATCTACTTTACCATGACCGTCTTAAGATGGATTCTGAGCTAGAGAATCAAATTGGAGCAAAGTTTGAGGAAGATCTCGATAAGATGCTCTCGAAATGTGACATAGTGGTCATCAATACGCCTCTTACAGAGAAAACAAA</genome_strand>
        <mrna_strand>AAGGCAAAAAATCTACAACTTCTGCTGACAGCTGGAATTGGATCAGATCATGTTGATCTGAAAGCTGCTGCTGCTGCTGGATTGACAGTAGCAGAGGTCACTGGAAGCAATACTGTCTCAGTTGCGGAAGATGAACTGATGCGAATCTTAATTCTTGTCCGAAATTTCTTACCTGGACATCATCAGGTTATCAATGGGGAGTGGAATGTTGCTGCAATTGCGCACAGAGCTTATGATTTGGAAGGCAAGACTGTTGGAACTGTTGGTGCAGGACGTATTGGCAGACTTTTACTCCAGCGATTGAAGCCATTTAACTGTAATCTACTTTACCATGACCGTCTTAAGATGGATTCTGAGCTAGAGAATCAAATTGGAGCAAAGTTTGAGGAAGATCTCGATAAGATGCTCTCGAAATGTGACATAGTGGTCATCAATACGCCTCTTACAGAGAAAACAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0236E02-u8qcS/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E402856" ref_strand="+" ref_description="SGN-E402856 [PPC-8-L22]">
      <seq>gcaaaaaatctacaactactgctgacagctggaattggatcagatcatgttgatctgaaagctgctgctgctgctggattgacagtagcagaggtcactggaagcaatactgtctcagttgcggaagatgaactgatgcgaatcttaattcttgtccgaaatttcttgcctggacatcatcaggttatcaatggggagtggaatgttgctgcaattgcgcacagagcttatgatttggaaggcaagactgttggaactgttggtgcaggacgtattggcagacttttactccaacgattgaagccatttaactgtaatctactttaccatgaccgtcttaagatggattctgagctagagaatcaaattggagcaaagttcgaggaagatctcgataagatgctctcgaaatgtgacattgtggtcatcaatacgcctcttacagagaaaacaaaaggaatgtttgacaaggaaagaattgcaaagttgaagaagggagttctaattgtaaacaatgctcgaggagcaattatggacactcaagcagttgttgatgcttgtaacagcggtcatattgcaggatacagtggagatgtttggtacccacaaccagctcccaaggaccatccatggcgctacatgccaaaccaagctatgactcctcacatttctgggactaccattgatgcacagttgaggtatgcagctggaacaaaagatatgttggacaggtacttcaagggtgaggatttccctgctgaaaatacattgtc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0236E02-u8qcS/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0236E02.1" temp_strand="+" temp_description="C02HBa0236E02.1  AC215430.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0236E02 sequenced_by:kribb upload_account_name:korea">
        <position start="67551" stop="70011"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="67851" g_stop="68305" g_length="455"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="455" r_length="455" r_score="0.989"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="68306" i_stop="69046" i_length="741">
            <donor d_prob="0.995" d_score="0.98"/>
            <acceptor a_prob="0.768" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="69047" g_stop="69171" g_length="125"/>
          <reference_exon_boundary r_type="cDNA" r_start="456" r_stop="580" r_length="125" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="69172" i_stop="69406" i_length="235">
            <donor d_prob="0.983" d_score="1.00"/>
            <acceptor a_prob="0.964" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="69407" g_stop="69519" g_length="113"/>
          <reference_exon_boundary r_type="cDNA" r_start="581" r_stop="693" r_length="113" r_score="0.982"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="69520" i_stop="69630" i_length="111">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.989" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="69631" g_stop="69711" g_length="81"/>
          <reference_exon_boundary r_type="cDNA" r_start="694" r_stop="773" r_length="80" r_score="0.975"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0236E02.1" gen_strand="+" ref_id="SGN-E402856" ref_strand="+">
        <total_alignment_score>0.988</total_alignment_score>
        <cumulative_length_of_scored_exons>774</cumulative_length_of_scored_exons>
        <coverage percentage="1.001" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0236E02.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E402856" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="67851" e_stop="68305"/>
          <exon e_start="69047" e_stop="69171"/>
          <exon e_start="69407" e_stop="69519"/>
          <exon e_start="69631" e_stop="69711"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCAAAAAATCTACAACTTCTGCTGACAGCTGGAATTGGATCAGATCATGTTGATCTGAAAGCTGCTGCTGCTGCTGGATTGACAGTAGCAGAGGTCACTGGAAGCAATACTGTCTCAGTTGCGGAAGATGAACTGATGCGAATCTTAATTCTTGTCCGAAATTTCTTACCTGGACATCATCAGGTTATCAATGGGGAGTGGAATGTTGCTGCAATTGCGCACAGAGCTTATGATTTGGAAGGCAAGACTGTTGGAACTGTTGGTGCAGGACGTATTGGCAGACTTTTACTCCAGCGATTGAAGCCATTTAACTGTAATCTACTTTACCATGACCGTCTTAAGATGGATTCTGAGCTAGAGAATCAAATTGGAGCAAAGTTTGAGGAAGATCTCGATAAGATGCTCTCGAAATGTGACATAGTGGTCATCAATACGCCTCTTACAGAGAAAACAAAGTAAGGTTTCTGTTTCTGTAATTACCCGTCGTAAACCTATACAATAATATTTATTGACAAAGCTTCTTATATTCAAGTTATTTTAACAATGACTTAATTATGAAATGAACTAAGTAAGCTAAAGTGAATATTCATTGAGAATGAAATATGATATTTAGCGAAGGGAAGGAGAATCTTTGGTGTCATCGTAATTTTTTGGTATCACTCTAGATCATATATAAAGTAGTTGTATATTTAGATTCCCCGATTGTATTCCCTAAGTTAAGAAATTCTCTTGAGCATCCACCATATACTATGATACATGACTTTGGCTAAGCTCAAAAAGACTATCTCAATGATGGCCCTCCATGGATTCTCCACCTATATAAGCCACGGCTAAAGAAAAATTGCTTGGCCAAGTTGTCTTTTACCTTTGGCATGATGCAAAAAACATTTGATATTCTTTCTGTGTGAACCACTGCTACGAGTAATATGTTCTTAGAGATCATGTTTTCTTTTTGTTCTTCCTTTAATTTTCTATTTGAAGATTTGTCATCAGTTAGAGGTCATCGGTAGGATGATAGATGTTCTCAGCAACTTGTGTTGCCAGAATAATATGATTGCCAATGGAGTATTTTTAAGATTCTTGGAGATGTAAGAGTTGTTTCTGTCCATACATCACTCTTCTCATGTCACTAAGGTCATTGATTGTTTCCATGTGCTATATCGCAAATTGCTCACAATTTTAACTATGTGATCCAGAGGAATGTTTGACAAGGAAAGAATTGCAAAGTTGAAGAAGGGAGTTCTAATTGTAAACAATGCTCGAGGAGCAATTATGGACACTCAAGCAGTTGTTGATGCTTGTAACAGCGGTCATATTGCAGGTATTTTAACATAACTTGAACACATCATCCAGAGATGAGCCCTCAGCCTTAATATCAATTGAACACACCATTATATTTTTTTCTTCAATTCTTGCTTGTTTCTTTTCTTCAATATATTTTATCGACATTTGGAAGTAGTTCCATATCTTGTGGAATTGCCGAATCCTTTGAAGAAAGAAGTACTTCTAAAACTATATTGAGTTCTTTTCTTTCGGTTATTTCCCCCCAAATTTAGGATACAGTGGAGATGTTTGGTACCCACAACCAGCTCCCAAGGACCATCTATGGCGTTACATGCCAAACCAAGCTATGACTCCTCACATTTCTGGGACTACCATTGATGCACAGGTTTGTAAATACTCTGTTTCTCTAATTTCTTTAGGCTTTGCTTTTTCTTTACTTTCACGACATTATAATTGCGATTAAACTGAGAGAAGCTTGTTACTTTCAATTTCGCAGTTGAGGTATGCAGCTGGAACAAAGGATATGTTGGACAGGTACTTCAAGGGTGAGGATTTCCCTGCTGAAAATTACATTGTC</genome_strand>
        <mrna_strand>GCAAAAAATCTACAACTACTGCTGACAGCTGGAATTGGATCAGATCATGTTGATCTGAAAGCTGCTGCTGCTGCTGGATTGACAGTAGCAGAGGTCACTGGAAGCAATACTGTCTCAGTTGCGGAAGATGAACTGATGCGAATCTTAATTCTTGTCCGAAATTTCTTGCCTGGACATCATCAGGTTATCAATGGGGAGTGGAATGTTGCTGCAATTGCGCACAGAGCTTATGATTTGGAAGGCAAGACTGTTGGAACTGTTGGTGCAGGACGTATTGGCAGACTTTTACTCCAACGATTGAAGCCATTTAACTGTAATCTACTTTACCATGACCGTCTTAAGATGGATTCTGAGCTAGAGAATCAAATTGGAGCAAAGTTCGAGGAAGATCTCGATAAGATGCTCTCGAAATGTGACATTGTGGTCATCAATACGCCTCTTACAGAGAAAACAAA.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGGAATGTTTGACAAGGAAAGAATTGCAAAGTTGAAGAAGGGAGTTCTAATTGTAAACAATGCTCGAGGAGCAATTATGGACACTCAAGCAGTTGTTGATGCTTGTAACAGCGGTCATATTGCAG...........................................................................................................................................................................................................................................GATACAGTGGAGATGTTTGGTACCCACAACCAGCTCCCAAGGACCATCCATGGCGCTACATGCCAAACCAAGCTATGACTCCTCACATTTCTGGGACTACCATTGATGCACAG...............................................................................................................TTGAGGTATGCAGCTGGAACAAAAGATATGTTGGACAGGTACTTCAAGGGTGAGGATTTCCCTGCTGAAAA-TACATTGTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0236E02-u8qcS/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E400960" ref_strand="+" ref_description="SGN-E400960 [PPC-2-N1]">
      <seq>gcaaaaaatctacaactactgctgacagctggaattggatcagatcatgttgatctgaaagctgctgctgctgctggattgacagtagcagaggtcactggaagcaatactgtctcagttgcggaagatgaactgatgcgaatcttaattcttgtccgaaatttcttgcctggacatcatcaggttatcaatggggagtggaatgttgctgcaattgcgcacagagcttatgatttggaaggcaagactgttggaactgttggtgcaggacgtattggcagacttttactccaacgattgaagccatttaactgtaatctactttaccatgaccgtcttaagatggattctgagctagagaatcaaattggagcaaagttcgaggaagatctcgataagatgctctcgaaatgtgacattgtggtcatcaatacgcctcttacagagaaaacaaaaggaatgtttgacaaggaaagaattgcaaagttgaagaagggagttctaattgtaaacaat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0236E02-u8qcS/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0236E02.1" temp_strand="+" temp_description="C02HBa0236E02.1  AC215430.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0236E02 sequenced_by:kribb upload_account_name:korea">
        <position start="67551" stop="69407"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="67851" g_stop="68305" g_length="455"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="455" r_length="455" r_score="0.989"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="68306" i_stop="69046" i_length="741">
            <donor d_prob="0.995" d_score="0.98"/>
            <acceptor a_prob="0.768" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="69047" g_stop="69107" g_length="61"/>
          <reference_exon_boundary r_type="cDNA" r_start="456" r_stop="516" r_length="61" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0236E02.1" gen_strand="+" ref_id="SGN-E400960" ref_strand="+">
        <total_alignment_score>0.990</total_alignment_score>
        <cumulative_length_of_scored_exons>516</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0236E02.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E400960" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="67851" e_stop="68305"/>
          <exon e_start="69047" e_stop="69107"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCAAAAAATCTACAACTTCTGCTGACAGCTGGAATTGGATCAGATCATGTTGATCTGAAAGCTGCTGCTGCTGCTGGATTGACAGTAGCAGAGGTCACTGGAAGCAATACTGTCTCAGTTGCGGAAGATGAACTGATGCGAATCTTAATTCTTGTCCGAAATTTCTTACCTGGACATCATCAGGTTATCAATGGGGAGTGGAATGTTGCTGCAATTGCGCACAGAGCTTATGATTTGGAAGGCAAGACTGTTGGAACTGTTGGTGCAGGACGTATTGGCAGACTTTTACTCCAGCGATTGAAGCCATTTAACTGTAATCTACTTTACCATGACCGTCTTAAGATGGATTCTGAGCTAGAGAATCAAATTGGAGCAAAGTTTGAGGAAGATCTCGATAAGATGCTCTCGAAATGTGACATAGTGGTCATCAATACGCCTCTTACAGAGAAAACAAAGTAAGGTTTCTGTTTCTGTAATTACCCGTCGTAAACCTATACAATAATATTTATTGACAAAGCTTCTTATATTCAAGTTATTTTAACAATGACTTAATTATGAAATGAACTAAGTAAGCTAAAGTGAATATTCATTGAGAATGAAATATGATATTTAGCGAAGGGAAGGAGAATCTTTGGTGTCATCGTAATTTTTTGGTATCACTCTAGATCATATATAAAGTAGTTGTATATTTAGATTCCCCGATTGTATTCCCTAAGTTAAGAAATTCTCTTGAGCATCCACCATATACTATGATACATGACTTTGGCTAAGCTCAAAAAGACTATCTCAATGATGGCCCTCCATGGATTCTCCACCTATATAAGCCACGGCTAAAGAAAAATTGCTTGGCCAAGTTGTCTTTTACCTTTGGCATGATGCAAAAAACATTTGATATTCTTTCTGTGTGAACCACTGCTACGAGTAATATGTTCTTAGAGATCATGTTTTCTTTTTGTTCTTCCTTTAATTTTCTATTTGAAGATTTGTCATCAGTTAGAGGTCATCGGTAGGATGATAGATGTTCTCAGCAACTTGTGTTGCCAGAATAATATGATTGCCAATGGAGTATTTTTAAGATTCTTGGAGATGTAAGAGTTGTTTCTGTCCATACATCACTCTTCTCATGTCACTAAGGTCATTGATTGTTTCCATGTGCTATATCGCAAATTGCTCACAATTTTAACTATGTGATCCAGAGGAATGTTTGACAAGGAAAGAATTGCAAAGTTGAAGAAGGGAGTTCTAATTGTAAACAAT</genome_strand>
        <mrna_strand>GCAAAAAATCTACAACTACTGCTGACAGCTGGAATTGGATCAGATCATGTTGATCTGAAAGCTGCTGCTGCTGCTGGATTGACAGTAGCAGAGGTCACTGGAAGCAATACTGTCTCAGTTGCGGAAGATGAACTGATGCGAATCTTAATTCTTGTCCGAAATTTCTTGCCTGGACATCATCAGGTTATCAATGGGGAGTGGAATGTTGCTGCAATTGCGCACAGAGCTTATGATTTGGAAGGCAAGACTGTTGGAACTGTTGGTGCAGGACGTATTGGCAGACTTTTACTCCAACGATTGAAGCCATTTAACTGTAATCTACTTTACCATGACCGTCTTAAGATGGATTCTGAGCTAGAGAATCAAATTGGAGCAAAGTTCGAGGAAGATCTCGATAAGATGCTCTCGAAATGTGACATTGTGGTCATCAATACGCCTCTTACAGAGAAAACAAA.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGGAATGTTTGACAAGGAAAGAATTGCAAAGTTGAAGAAGGGAGTTCTAATTGTAAACAAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0236E02-u8qcS/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E261763" ref_strand="+" ref_description="SGN-E261763 [cLEG-61-P14]">
      <seq>caaaaaatctacaacttctgctgacagctggaattggatctgatcatgttgatctgaaagctgctgctgctgctggattgacagtagcactaggtcactggaagcaatactgtctcagttgcggaagatgaactgatgcgaatcttaattcttgtccgaaatttcttacctggacatcatcaggttatcaatggggagtggaatgttgctgccattgggcacagaactta</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0236E02-u8qcS/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0236E02.1" temp_strand="+" temp_description="C02HBa0236E02.1  AC215430.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0236E02 sequenced_by:kribb upload_account_name:korea">
        <position start="67552" stop="68380"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="67852" g_stop="68080" g_length="229"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="230" r_length="230" r_score="0.969"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0236E02.1" gen_strand="+" ref_id="SGN-E261763" ref_strand="+">
        <total_alignment_score>0.969</total_alignment_score>
        <cumulative_length_of_scored_exons>229</cumulative_length_of_scored_exons>
        <coverage percentage="0.996" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0236E02.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E261763" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="67852" e_stop="68080"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAAAAAATCTACAACTTCTGCTGACAGCTGGAATTGGATCAGATCATGTTGATCTGAAAGCTGCTGCTGCTGCTGGATTGACAGTAGCA-GAGGTCACTGGAAGCAATACTGTCTCAGTTGCGGAAGATGAACTGATGCGAATCTTAATTCTTGTCCGAAATTTCTTACCTGGACATCATCAGGTTATCAATGGGGAGTGGAATGTTGCTGCAATTGCGCACAGAGCTTA</genome_strand>
        <mrna_strand>CAAAAAATCTACAACTTCTGCTGACAGCTGGAATTGGATCTGATCATGTTGATCTGAAAGCTGCTGCTGCTGCTGGATTGACAGTAGCACTAGGTCACTGGAAGCAATACTGTCTCAGTTGCGGAAGATGAACTGATGCGAATCTTAATTCTTGTCCGAAATTTCTTACCTGGACATCATCAGGTTATCAATGGGGAGTGGAATGTTGCTGCCATTGGGCACAGAACTTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0236E02-u8qcS/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E220993" ref_strand="+" ref_description="SGN-E220993 [cLEL-22-I5](-)">
      <seq>cttctgctgacagctggaattggatcagatcatgttgatctgaaagctgctgctgctgctggattgacagtagcagaggtcactggaagcaatactgtctcagctgcggaagatgaactgatgcgaatcttaattcttgtccgaaatttcttacctggacatcatcaggttatcaatggggagtggaatgttgctgcaattgcgcacagagcttatgatttggaaggcaagactgttggaactgttggtgcaggacgtattggcagacttttactccagcgattgaagccatttaactgtaatctactttaccatgaccgtcttaagatggattctgagctagagaatcaaattggagcaaagtttgaggaagatctcgataagatgctctcgaaatgtgacatagtggtcatcaatacgcctcttacagagaaaacaaaaggaatgtttgacaaggaaagaattgcaaagttgaagaagggagttctaattgtaaacaat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0236E02-u8qcS/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0236E02.1" temp_strand="+" temp_description="C02HBa0236E02.1  AC215430.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0236E02 sequenced_by:kribb upload_account_name:korea">
        <position start="67566" stop="69407"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="67866" g_stop="68305" g_length="440"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="440" r_length="440" r_score="0.998"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="68306" i_stop="69046" i_length="741">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.768" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="69047" g_stop="69107" g_length="61"/>
          <reference_exon_boundary r_type="cDNA" r_start="441" r_stop="501" r_length="61" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0236E02.1" gen_strand="+" ref_id="SGN-E220993" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>501</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0236E02.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E220993" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="67866" e_stop="68305"/>
          <exon e_start="69047" e_stop="69107"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTTCTGCTGACAGCTGGAATTGGATCAGATCATGTTGATCTGAAAGCTGCTGCTGCTGCTGGATTGACAGTAGCAGAGGTCACTGGAAGCAATACTGTCTCAGTTGCGGAAGATGAACTGATGCGAATCTTAATTCTTGTCCGAAATTTCTTACCTGGACATCATCAGGTTATCAATGGGGAGTGGAATGTTGCTGCAATTGCGCACAGAGCTTATGATTTGGAAGGCAAGACTGTTGGAACTGTTGGTGCAGGACGTATTGGCAGACTTTTACTCCAGCGATTGAAGCCATTTAACTGTAATCTACTTTACCATGACCGTCTTAAGATGGATTCTGAGCTAGAGAATCAAATTGGAGCAAAGTTTGAGGAAGATCTCGATAAGATGCTCTCGAAATGTGACATAGTGGTCATCAATACGCCTCTTACAGAGAAAACAAAGTAAGGTTTCTGTTTCTGTAATTACCCGTCGTAAACCTATACAATAATATTTATTGACAAAGCTTCTTATATTCAAGTTATTTTAACAATGACTTAATTATGAAATGAACTAAGTAAGCTAAAGTGAATATTCATTGAGAATGAAATATGATATTTAGCGAAGGGAAGGAGAATCTTTGGTGTCATCGTAATTTTTTGGTATCACTCTAGATCATATATAAAGTAGTTGTATATTTAGATTCCCCGATTGTATTCCCTAAGTTAAGAAATTCTCTTGAGCATCCACCATATACTATGATACATGACTTTGGCTAAGCTCAAAAAGACTATCTCAATGATGGCCCTCCATGGATTCTCCACCTATATAAGCCACGGCTAAAGAAAAATTGCTTGGCCAAGTTGTCTTTTACCTTTGGCATGATGCAAAAAACATTTGATATTCTTTCTGTGTGAACCACTGCTACGAGTAATATGTTCTTAGAGATCATGTTTTCTTTTTGTTCTTCCTTTAATTTTCTATTTGAAGATTTGTCATCAGTTAGAGGTCATCGGTAGGATGATAGATGTTCTCAGCAACTTGTGTTGCCAGAATAATATGATTGCCAATGGAGTATTTTTAAGATTCTTGGAGATGTAAGAGTTGTTTCTGTCCATACATCACTCTTCTCATGTCACTAAGGTCATTGATTGTTTCCATGTGCTATATCGCAAATTGCTCACAATTTTAACTATGTGATCCAGAGGAATGTTTGACAAGGAAAGAATTGCAAAGTTGAAGAAGGGAGTTCTAATTGTAAACAAT</genome_strand>
        <mrna_strand>CTTCTGCTGACAGCTGGAATTGGATCAGATCATGTTGATCTGAAAGCTGCTGCTGCTGCTGGATTGACAGTAGCAGAGGTCACTGGAAGCAATACTGTCTCAGCTGCGGAAGATGAACTGATGCGAATCTTAATTCTTGTCCGAAATTTCTTACCTGGACATCATCAGGTTATCAATGGGGAGTGGAATGTTGCTGCAATTGCGCACAGAGCTTATGATTTGGAAGGCAAGACTGTTGGAACTGTTGGTGCAGGACGTATTGGCAGACTTTTACTCCAGCGATTGAAGCCATTTAACTGTAATCTACTTTACCATGACCGTCTTAAGATGGATTCTGAGCTAGAGAATCAAATTGGAGCAAAGTTTGAGGAAGATCTCGATAAGATGCTCTCGAAATGTGACATAGTGGTCATCAATACGCCTCTTACAGAGAAAACAAA.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGGAATGTTTGACAAGGAAAGAATTGCAAAGTTGAAGAAGGGAGTTCTAATTGTAAACAAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0236E02-u8qcS/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E235196" ref_strand="+" ref_description="SGN-E235196 [cLEL-6-F23](-)">
      <seq>gctggaattggatcagatcatgttgatctgaaagctgctgctgctgctggattgacagtagcagaggtcactggaagcaatactgtctcagttgcggaagatgaactgatgcgaatcttaattcttgtccgaaatttcttacctggacatcatcaggttatcaatggggagtggaatgttgctgcaattgcgcacagagcttatgatttggaaggcaagactgttggaactgttggtgcaggacgtattggcagacttttactccagcgattgaagccatttaactgtaatctactttaccatgaccgtcttaagatggattctgagctagagaatcaaattggagcaaagtttgaggaagatctcgataagatgctctcgaaatgtgacatagtggtcatcaatacgcctcttacagagaaaacaaaaggaatgtttgacaaggaaagaattgcaaagttgaagaagggagttctaattgtaaacaat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0236E02-u8qcS/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0236E02.1" temp_strand="+" temp_description="C02HBa0236E02.1  AC215430.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0236E02 sequenced_by:kribb upload_account_name:korea">
        <position start="67578" stop="69407"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="67878" g_stop="68305" g_length="428"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="428" r_length="428" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="68306" i_stop="69046" i_length="741">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.768" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="69047" g_stop="69107" g_length="61"/>
          <reference_exon_boundary r_type="cDNA" r_start="429" r_stop="489" r_length="61" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0236E02.1" gen_strand="+" ref_id="SGN-E235196" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>489</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0236E02.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E235196" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="67878" e_stop="68305"/>
          <exon e_start="69047" e_stop="69107"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCTGGAATTGGATCAGATCATGTTGATCTGAAAGCTGCTGCTGCTGCTGGATTGACAGTAGCAGAGGTCACTGGAAGCAATACTGTCTCAGTTGCGGAAGATGAACTGATGCGAATCTTAATTCTTGTCCGAAATTTCTTACCTGGACATCATCAGGTTATCAATGGGGAGTGGAATGTTGCTGCAATTGCGCACAGAGCTTATGATTTGGAAGGCAAGACTGTTGGAACTGTTGGTGCAGGACGTATTGGCAGACTTTTACTCCAGCGATTGAAGCCATTTAACTGTAATCTACTTTACCATGACCGTCTTAAGATGGATTCTGAGCTAGAGAATCAAATTGGAGCAAAGTTTGAGGAAGATCTCGATAAGATGCTCTCGAAATGTGACATAGTGGTCATCAATACGCCTCTTACAGAGAAAACAAAGTAAGGTTTCTGTTTCTGTAATTACCCGTCGTAAACCTATACAATAATATTTATTGACAAAGCTTCTTATATTCAAGTTATTTTAACAATGACTTAATTATGAAATGAACTAAGTAAGCTAAAGTGAATATTCATTGAGAATGAAATATGATATTTAGCGAAGGGAAGGAGAATCTTTGGTGTCATCGTAATTTTTTGGTATCACTCTAGATCATATATAAAGTAGTTGTATATTTAGATTCCCCGATTGTATTCCCTAAGTTAAGAAATTCTCTTGAGCATCCACCATATACTATGATACATGACTTTGGCTAAGCTCAAAAAGACTATCTCAATGATGGCCCTCCATGGATTCTCCACCTATATAAGCCACGGCTAAAGAAAAATTGCTTGGCCAAGTTGTCTTTTACCTTTGGCATGATGCAAAAAACATTTGATATTCTTTCTGTGTGAACCACTGCTACGAGTAATATGTTCTTAGAGATCATGTTTTCTTTTTGTTCTTCCTTTAATTTTCTATTTGAAGATTTGTCATCAGTTAGAGGTCATCGGTAGGATGATAGATGTTCTCAGCAACTTGTGTTGCCAGAATAATATGATTGCCAATGGAGTATTTTTAAGATTCTTGGAGATGTAAGAGTTGTTTCTGTCCATACATCACTCTTCTCATGTCACTAAGGTCATTGATTGTTTCCATGTGCTATATCGCAAATTGCTCACAATTTTAACTATGTGATCCAGAGGAATGTTTGACAAGGAAAGAATTGCAAAGTTGAAGAAGGGAGTTCTAATTGTAAACAAT</genome_strand>
        <mrna_strand>GCTGGAATTGGATCAGATCATGTTGATCTGAAAGCTGCTGCTGCTGCTGGATTGACAGTAGCAGAGGTCACTGGAAGCAATACTGTCTCAGTTGCGGAAGATGAACTGATGCGAATCTTAATTCTTGTCCGAAATTTCTTACCTGGACATCATCAGGTTATCAATGGGGAGTGGAATGTTGCTGCAATTGCGCACAGAGCTTATGATTTGGAAGGCAAGACTGTTGGAACTGTTGGTGCAGGACGTATTGGCAGACTTTTACTCCAGCGATTGAAGCCATTTAACTGTAATCTACTTTACCATGACCGTCTTAAGATGGATTCTGAGCTAGAGAATCAAATTGGAGCAAAGTTTGAGGAAGATCTCGATAAGATGCTCTCGAAATGTGACATAGTGGTCATCAATACGCCTCTTACAGAGAAAACAAA.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGGAATGTTTGACAAGGAAAGAATTGCAAAGTTGAAGAAGGGAGTTCTAATTGTAAACAAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0236E02-u8qcS/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E323451" ref_strand="+" ref_description="SGN-E323451 [cTOC-7-K20]">
      <seq>tggaattggatcagatcatgttgatctgaaagctgctggtgctgctggattgacagtagcagaggtcactggaagcaatactgtctcagttgcggaagatgaactgatgcgaatcttaattcttgtccgaaatttcttacctggacatcatcaggttatcaatggggagtggaatgttgctgcaattgcgcacagagcttatgatttggaaggcaagactgttggaactgttggtgcaggacgtattggcagacttttactccagcgattgaagccatttaactgtaatctactttaccatgaccgtcttaagatggattctgagctagagaatcaaattggagcaaagtttgaggaagatctcgataagatgctctcgaaatgtgacatagtggtcatcaatacgcctcttacagagaaaacaaaaggaatgtttgacaaggaaagaattgcaaag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0236E02-u8qcS/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0236E02.1" temp_strand="+" temp_description="C02HBa0236E02.1  AC215430.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0236E02 sequenced_by:kribb upload_account_name:korea">
        <position start="67580" stop="69377"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="67880" g_stop="68305" g_length="426"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="426" r_length="426" r_score="0.998"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="68306" i_stop="69046" i_length="741">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.768" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="69047" g_stop="69077" g_length="31"/>
          <reference_exon_boundary r_type="cDNA" r_start="427" r_stop="457" r_length="31" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0236E02.1" gen_strand="+" ref_id="SGN-E323451" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>457</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0236E02.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E323451" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="67880" e_stop="68305"/>
          <exon e_start="69047" e_stop="69077"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGGAATTGGATCAGATCATGTTGATCTGAAAGCTGCTGCTGCTGCTGGATTGACAGTAGCAGAGGTCACTGGAAGCAATACTGTCTCAGTTGCGGAAGATGAACTGATGCGAATCTTAATTCTTGTCCGAAATTTCTTACCTGGACATCATCAGGTTATCAATGGGGAGTGGAATGTTGCTGCAATTGCGCACAGAGCTTATGATTTGGAAGGCAAGACTGTTGGAACTGTTGGTGCAGGACGTATTGGCAGACTTTTACTCCAGCGATTGAAGCCATTTAACTGTAATCTACTTTACCATGACCGTCTTAAGATGGATTCTGAGCTAGAGAATCAAATTGGAGCAAAGTTTGAGGAAGATCTCGATAAGATGCTCTCGAAATGTGACATAGTGGTCATCAATACGCCTCTTACAGAGAAAACAAAGTAAGGTTTCTGTTTCTGTAATTACCCGTCGTAAACCTATACAATAATATTTATTGACAAAGCTTCTTATATTCAAGTTATTTTAACAATGACTTAATTATGAAATGAACTAAGTAAGCTAAAGTGAATATTCATTGAGAATGAAATATGATATTTAGCGAAGGGAAGGAGAATCTTTGGTGTCATCGTAATTTTTTGGTATCACTCTAGATCATATATAAAGTAGTTGTATATTTAGATTCCCCGATTGTATTCCCTAAGTTAAGAAATTCTCTTGAGCATCCACCATATACTATGATACATGACTTTGGCTAAGCTCAAAAAGACTATCTCAATGATGGCCCTCCATGGATTCTCCACCTATATAAGCCACGGCTAAAGAAAAATTGCTTGGCCAAGTTGTCTTTTACCTTTGGCATGATGCAAAAAACATTTGATATTCTTTCTGTGTGAACCACTGCTACGAGTAATATGTTCTTAGAGATCATGTTTTCTTTTTGTTCTTCCTTTAATTTTCTATTTGAAGATTTGTCATCAGTTAGAGGTCATCGGTAGGATGATAGATGTTCTCAGCAACTTGTGTTGCCAGAATAATATGATTGCCAATGGAGTATTTTTAAGATTCTTGGAGATGTAAGAGTTGTTTCTGTCCATACATCACTCTTCTCATGTCACTAAGGTCATTGATTGTTTCCATGTGCTATATCGCAAATTGCTCACAATTTTAACTATGTGATCCAGAGGAATGTTTGACAAGGAAAGAATTGCAAAG</genome_strand>
        <mrna_strand>TGGAATTGGATCAGATCATGTTGATCTGAAAGCTGCTGGTGCTGCTGGATTGACAGTAGCAGAGGTCACTGGAAGCAATACTGTCTCAGTTGCGGAAGATGAACTGATGCGAATCTTAATTCTTGTCCGAAATTTCTTACCTGGACATCATCAGGTTATCAATGGGGAGTGGAATGTTGCTGCAATTGCGCACAGAGCTTATGATTTGGAAGGCAAGACTGTTGGAACTGTTGGTGCAGGACGTATTGGCAGACTTTTACTCCAGCGATTGAAGCCATTTAACTGTAATCTACTTTACCATGACCGTCTTAAGATGGATTCTGAGCTAGAGAATCAAATTGGAGCAAAGTTTGAGGAAGATCTCGATAAGATGCTCTCGAAATGTGACATAGTGGTCATCAATACGCCTCTTACAGAGAAAACAAA.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGGAATGTTTGACAAGGAAAGAATTGCAAAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0236E02-u8qcS/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E720468" ref_strand="+" ref_description="SGN-E720468 [FC10DF04]">
      <seq>ggatcagatcatgttgatctgaaagctgctgctgctgctggattgacagtagcataggtcactggaagcaatactgtctcagttgcggaagatgaactgatgccaatcttaattcttgtccgaaataacttacctggacatcatcaggttatcaatggggagtggaatgttgctgcaattgcgcacagagcttatgatttggaaggcaagactgttggaactgttggtgcaggacgtattggcagacttttactccagcgattgaagccatttaactgtaatctactttaccatgaccgtcttaagatggattctgagctagagaatcaaattggagcaaagtttgag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0236E02-u8qcS/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0236E02.1" temp_strand="+" temp_description="C02HBa0236E02.1  AC215430.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0236E02 sequenced_by:kribb upload_account_name:korea">
        <position start="67587" stop="68534"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="67887" g_stop="68234" g_length="348"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="348" r_length="348" r_score="0.989"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0236E02.1" gen_strand="+" ref_id="SGN-E720468" ref_strand="+">
        <total_alignment_score>0.989</total_alignment_score>
        <cumulative_length_of_scored_exons>348</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0236E02.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E720468" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="67887" e_stop="68234"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGATCAGATCATGTTGATCTGAAAGCTGCTGCTGCTGCTGGATTGACAGTAGCAGAGGTCACTGGAAGCAATACTGTCTCAGTTGCGGAAGATGAACTGATGCGAATCTTAATTCTTGTCCGAAATTTCTTACCTGGACATCATCAGGTTATCAATGGGGAGTGGAATGTTGCTGCAATTGCGCACAGAGCTTATGATTTGGAAGGCAAGACTGTTGGAACTGTTGGTGCAGGACGTATTGGCAGACTTTTACTCCAGCGATTGAAGCCATTTAACTGTAATCTACTTTACCATGACCGTCTTAAGATGGATTCTGAGCTAGAGAATCAAATTGGAGCAAAGTTTGAG</genome_strand>
        <mrna_strand>GGATCAGATCATGTTGATCTGAAAGCTGCTGCTGCTGCTGGATTGACAGTAGCATAGGTCACTGGAAGCAATACTGTCTCAGTTGCGGAAGATGAACTGATGCCAATCTTAATTCTTGTCCGAAATAACTTACCTGGACATCATCAGGTTATCAATGGGGAGTGGAATGTTGCTGCAATTGCGCACAGAGCTTATGATTTGGAAGGCAAGACTGTTGGAACTGTTGGTGCAGGACGTATTGGCAGACTTTTACTCCAGCGATTGAAGCCATTTAACTGTAATCTACTTTACCATGACCGTCTTAAGATGGATTCTGAGCTAGAGAATCAAATTGGAGCAAAGTTTGAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0236E02-u8qcS/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E471535" ref_strand="+" ref_description="SGN-E471535 [cSTB-24-G22]">
      <seq>ctgaaagctgctgctgctgctggattgagggtagcagaggtcactggaagcaatactgtctcagttgctgaagatgaactgatgcgaatcttaattcttgtccgaaatttcttgcctggacatcatcaggttatcaatggggagtggaatgttgctgcaattgcgcacagagcttatgatttggaaggcaagactgttggaactgttggtgcaggacgtattggcagacttttactccaacgattgaagccatttaactgtaatctactttaccatgaccgtcttaagatggattctgagctagagaatcaaattggagcaaagtttgaggaagatctcgataagatgctctcgaaatgtgacatagtggtcatcaatacacctcttacagagaaaacaaaaagaatgtttgacaaggaaagaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0236E02-u8qcS/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0236E02.1" temp_strand="+" temp_description="C02HBa0236E02.1  AC215430.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0236E02 sequenced_by:kribb upload_account_name:korea">
        <position start="67605" stop="69369"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="67905" g_stop="68305" g_length="401"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="401" r_length="401" r_score="0.985"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="68306" i_stop="69046" i_length="741">
            <donor d_prob="0.995" d_score="0.98"/>
            <acceptor a_prob="0.768" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="69047" g_stop="69069" g_length="23"/>
          <reference_exon_boundary r_type="cDNA" r_start="402" r_stop="424" r_length="23" r_score="0.957"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0236E02.1" gen_strand="+" ref_id="SGN-E471535" ref_strand="+">
        <total_alignment_score>0.985</total_alignment_score>
        <cumulative_length_of_scored_exons>424</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0236E02.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E471535" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="67905" e_stop="68305"/>
          <exon e_start="69047" e_stop="69069"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTGAAAGCTGCTGCTGCTGCTGGATTGACAGTAGCAGAGGTCACTGGAAGCAATACTGTCTCAGTTGCGGAAGATGAACTGATGCGAATCTTAATTCTTGTCCGAAATTTCTTACCTGGACATCATCAGGTTATCAATGGGGAGTGGAATGTTGCTGCAATTGCGCACAGAGCTTATGATTTGGAAGGCAAGACTGTTGGAACTGTTGGTGCAGGACGTATTGGCAGACTTTTACTCCAGCGATTGAAGCCATTTAACTGTAATCTACTTTACCATGACCGTCTTAAGATGGATTCTGAGCTAGAGAATCAAATTGGAGCAAAGTTTGAGGAAGATCTCGATAAGATGCTCTCGAAATGTGACATAGTGGTCATCAATACGCCTCTTACAGAGAAAACAAAGTAAGGTTTCTGTTTCTGTAATTACCCGTCGTAAACCTATACAATAATATTTATTGACAAAGCTTCTTATATTCAAGTTATTTTAACAATGACTTAATTATGAAATGAACTAAGTAAGCTAAAGTGAATATTCATTGAGAATGAAATATGATATTTAGCGAAGGGAAGGAGAATCTTTGGTGTCATCGTAATTTTTTGGTATCACTCTAGATCATATATAAAGTAGTTGTATATTTAGATTCCCCGATTGTATTCCCTAAGTTAAGAAATTCTCTTGAGCATCCACCATATACTATGATACATGACTTTGGCTAAGCTCAAAAAGACTATCTCAATGATGGCCCTCCATGGATTCTCCACCTATATAAGCCACGGCTAAAGAAAAATTGCTTGGCCAAGTTGTCTTTTACCTTTGGCATGATGCAAAAAACATTTGATATTCTTTCTGTGTGAACCACTGCTACGAGTAATATGTTCTTAGAGATCATGTTTTCTTTTTGTTCTTCCTTTAATTTTCTATTTGAAGATTTGTCATCAGTTAGAGGTCATCGGTAGGATGATAGATGTTCTCAGCAACTTGTGTTGCCAGAATAATATGATTGCCAATGGAGTATTTTTAAGATTCTTGGAGATGTAAGAGTTGTTTCTGTCCATACATCACTCTTCTCATGTCACTAAGGTCATTGATTGTTTCCATGTGCTATATCGCAAATTGCTCACAATTTTAACTATGTGATCCAGAGGAATGTTTGACAAGGAAAGAA</genome_strand>
        <mrna_strand>CTGAAAGCTGCTGCTGCTGCTGGATTGAGGGTAGCAGAGGTCACTGGAAGCAATACTGTCTCAGTTGCTGAAGATGAACTGATGCGAATCTTAATTCTTGTCCGAAATTTCTTGCCTGGACATCATCAGGTTATCAATGGGGAGTGGAATGTTGCTGCAATTGCGCACAGAGCTTATGATTTGGAAGGCAAGACTGTTGGAACTGTTGGTGCAGGACGTATTGGCAGACTTTTACTCCAACGATTGAAGCCATTTAACTGTAATCTACTTTACCATGACCGTCTTAAGATGGATTCTGAGCTAGAGAATCAAATTGGAGCAAAGTTTGAGGAAGATCTCGATAAGATGCTCTCGAAATGTGACATAGTGGTCATCAATACACCTCTTACAGAGAAAACAAA.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAGAATGTTTGACAAGGAAAGAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0236E02-u8qcS/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E471532" ref_strand="+" ref_description="SGN-E471532 [cSTB-24-G12]">
      <seq>ctgaaagctgctgctgctgctggattgacagtagcagaggtcactggaagcaatactgtctcagttgctgaagatgaactgatgcgaatcttaattcttgtccgaaatttcttgcctggacatcatcaggttatcaatggggagtggaatgttgctgcaattgcgcacagagcttatgatttggaaggcaagactgttggaactgttggtgcaggacgtattggcagacttttactccaacgattgaagccatttaactgtaatctactttaccatgaccgtcttaagatggattctgagctagagaatcaaattggagcaaagtttgaggaagatctcgataagatgctctcgaaatgtgacatagtggtcatcaatacacctcttacagagaaaaca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0236E02-u8qcS/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0236E02.1" temp_strand="+" temp_description="C02HBa0236E02.1  AC215430.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0236E02 sequenced_by:kribb upload_account_name:korea">
        <position start="67605" stop="68603"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="67905" g_stop="68303" g_length="399"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="399" r_length="399" r_score="0.990"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0236E02.1" gen_strand="+" ref_id="SGN-E471532" ref_strand="+">
        <total_alignment_score>0.990</total_alignment_score>
        <cumulative_length_of_scored_exons>399</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0236E02.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E471532" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="67905" e_stop="68303"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTGAAAGCTGCTGCTGCTGCTGGATTGACAGTAGCAGAGGTCACTGGAAGCAATACTGTCTCAGTTGCGGAAGATGAACTGATGCGAATCTTAATTCTTGTCCGAAATTTCTTACCTGGACATCATCAGGTTATCAATGGGGAGTGGAATGTTGCTGCAATTGCGCACAGAGCTTATGATTTGGAAGGCAAGACTGTTGGAACTGTTGGTGCAGGACGTATTGGCAGACTTTTACTCCAGCGATTGAAGCCATTTAACTGTAATCTACTTTACCATGACCGTCTTAAGATGGATTCTGAGCTAGAGAATCAAATTGGAGCAAAGTTTGAGGAAGATCTCGATAAGATGCTCTCGAAATGTGACATAGTGGTCATCAATACGCCTCTTACAGAGAAAACA</genome_strand>
        <mrna_strand>CTGAAAGCTGCTGCTGCTGCTGGATTGACAGTAGCAGAGGTCACTGGAAGCAATACTGTCTCAGTTGCTGAAGATGAACTGATGCGAATCTTAATTCTTGTCCGAAATTTCTTGCCTGGACATCATCAGGTTATCAATGGGGAGTGGAATGTTGCTGCAATTGCGCACAGAGCTTATGATTTGGAAGGCAAGACTGTTGGAACTGTTGGTGCAGGACGTATTGGCAGACTTTTACTCCAACGATTGAAGCCATTTAACTGTAATCTACTTTACCATGACCGTCTTAAGATGGATTCTGAGCTAGAGAATCAAATTGGAGCAAAGTTTGAGGAAGATCTCGATAAGATGCTCTCGAAATGTGACATAGTGGTCATCAATACACCTCTTACAGAGAAAACA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0236E02-u8qcS/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E234283" ref_strand="+" ref_description="SGN-E234283 [cLEL-8-H20](-)">
      <seq>ctgctgctgctgctggattgacagtagcagaggtcactggaagcaatactgtctcagttgcggaagatgaactgatgcgaatcttaattcttgtccgaaatttcttacctggacatcatcaggttatcaatggggagtggaatgttgctgcaattgcgcacagagcttatgatttggaaggcaagactgttggaactgttggtgcaggacgtattggcagacttttactccagcgattgaagccatttaactgtaatctactttaccatgaccgtcttaagatggattctgagctagagaatcaaattggagcaaagtttgaggaagatctcgataagatgctctcgaaatgtgacatagtggtcatcaatacgcctcttacagagaaaacaaaaggaatgtttgacaaggaaagaattgcaaagttgaagaagggagttctaattgtaaacaat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0236E02-u8qcS/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0236E02.1" temp_strand="+" temp_description="C02HBa0236E02.1  AC215430.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0236E02 sequenced_by:kribb upload_account_name:korea">
        <position start="67612" stop="69407"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="67912" g_stop="68305" g_length="394"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="394" r_length="394" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="68306" i_stop="69046" i_length="741">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.768" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="69047" g_stop="69107" g_length="61"/>
          <reference_exon_boundary r_type="cDNA" r_start="395" r_stop="455" r_length="61" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0236E02.1" gen_strand="+" ref_id="SGN-E234283" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>455</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0236E02.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E234283" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="67912" e_stop="68305"/>
          <exon e_start="69047" e_stop="69107"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTGCTGCTGCTGCTGGATTGACAGTAGCAGAGGTCACTGGAAGCAATACTGTCTCAGTTGCGGAAGATGAACTGATGCGAATCTTAATTCTTGTCCGAAATTTCTTACCTGGACATCATCAGGTTATCAATGGGGAGTGGAATGTTGCTGCAATTGCGCACAGAGCTTATGATTTGGAAGGCAAGACTGTTGGAACTGTTGGTGCAGGACGTATTGGCAGACTTTTACTCCAGCGATTGAAGCCATTTAACTGTAATCTACTTTACCATGACCGTCTTAAGATGGATTCTGAGCTAGAGAATCAAATTGGAGCAAAGTTTGAGGAAGATCTCGATAAGATGCTCTCGAAATGTGACATAGTGGTCATCAATACGCCTCTTACAGAGAAAACAAAGTAAGGTTTCTGTTTCTGTAATTACCCGTCGTAAACCTATACAATAATATTTATTGACAAAGCTTCTTATATTCAAGTTATTTTAACAATGACTTAATTATGAAATGAACTAAGTAAGCTAAAGTGAATATTCATTGAGAATGAAATATGATATTTAGCGAAGGGAAGGAGAATCTTTGGTGTCATCGTAATTTTTTGGTATCACTCTAGATCATATATAAAGTAGTTGTATATTTAGATTCCCCGATTGTATTCCCTAAGTTAAGAAATTCTCTTGAGCATCCACCATATACTATGATACATGACTTTGGCTAAGCTCAAAAAGACTATCTCAATGATGGCCCTCCATGGATTCTCCACCTATATAAGCCACGGCTAAAGAAAAATTGCTTGGCCAAGTTGTCTTTTACCTTTGGCATGATGCAAAAAACATTTGATATTCTTTCTGTGTGAACCACTGCTACGAGTAATATGTTCTTAGAGATCATGTTTTCTTTTTGTTCTTCCTTTAATTTTCTATTTGAAGATTTGTCATCAGTTAGAGGTCATCGGTAGGATGATAGATGTTCTCAGCAACTTGTGTTGCCAGAATAATATGATTGCCAATGGAGTATTTTTAAGATTCTTGGAGATGTAAGAGTTGTTTCTGTCCATACATCACTCTTCTCATGTCACTAAGGTCATTGATTGTTTCCATGTGCTATATCGCAAATTGCTCACAATTTTAACTATGTGATCCAGAGGAATGTTTGACAAGGAAAGAATTGCAAAGTTGAAGAAGGGAGTTCTAATTGTAAACAAT</genome_strand>
        <mrna_strand>CTGCTGCTGCTGCTGGATTGACAGTAGCAGAGGTCACTGGAAGCAATACTGTCTCAGTTGCGGAAGATGAACTGATGCGAATCTTAATTCTTGTCCGAAATTTCTTACCTGGACATCATCAGGTTATCAATGGGGAGTGGAATGTTGCTGCAATTGCGCACAGAGCTTATGATTTGGAAGGCAAGACTGTTGGAACTGTTGGTGCAGGACGTATTGGCAGACTTTTACTCCAGCGATTGAAGCCATTTAACTGTAATCTACTTTACCATGACCGTCTTAAGATGGATTCTGAGCTAGAGAATCAAATTGGAGCAAAGTTTGAGGAAGATCTCGATAAGATGCTCTCGAAATGTGACATAGTGGTCATCAATACGCCTCTTACAGAGAAAACAAA.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGGAATGTTTGACAAGGAAAGAATTGCAAAGTTGAAGAAGGGAGTTCTAATTGTAAACAAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0236E02-u8qcS/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E258539" ref_strand="+" ref_description="SGN-E258539 [cLEG-47-B15]">
      <seq>tggattgacagtagcagaggtcactggaagcaatactgtctcagttgcggaagatgaactgatgcgaatcttaattcttgtccgaaatttcttacctggacatcatcaggttatcaatggggagtggaatgttgctgcaattgcgcacagagcttatgatttggaaggcaagactgttggaactgttggtgcaggacgtattggcagacttttactccagcgattgaagccatttaactgtaatctactttaccatgaccgtcttaagatggattctgagctagagaatcaaattggagcaaagtttgaggaagatctcgataagatgctctcgaaatgtgacatagtggtcatcaatacgcctcttacagagaaaacaaaaggaatgtttgacaaggaaagaattgcaaagttgaagaagggagttctaattgtaaacaatgctcgaggagcaattatggacactcaagcagttgttgatgcttgtaacagcggtcatattgcaggatacagtggagatgtttggtacccacaaccagctcccaaggaccatctatggcgttacatgccaaaccaagctatgactcctcacatttctgggactaccattgatgcacagttgaggtatgcagctggaacaaaggatatgttggacaggtacttcaagggtgaggatttccctgctgaaaatacattgtncaagatggggaattggcacctcagtatcgctaaattatttat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0236E02-u8qcS/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0236E02.1" temp_strand="+" temp_description="C02HBa0236E02.1  AC215430.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0236E02 sequenced_by:kribb upload_account_name:korea">
        <position start="67625" stop="70053"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="67925" g_stop="68305" g_length="381"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="381" r_length="381" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="68306" i_stop="69046" i_length="741">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.768" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="69047" g_stop="69171" g_length="125"/>
          <reference_exon_boundary r_type="cDNA" r_start="382" r_stop="506" r_length="125" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="69172" i_stop="69406" i_length="235">
            <donor d_prob="0.983" d_score="1.00"/>
            <acceptor a_prob="0.964" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="69407" g_stop="69519" g_length="113"/>
          <reference_exon_boundary r_type="cDNA" r_start="507" r_stop="619" r_length="113" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="69520" i_stop="69630" i_length="111">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.989" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="69631" g_stop="69753" g_length="123"/>
          <reference_exon_boundary r_type="cDNA" r_start="620" r_stop="741" r_length="122" r_score="0.967"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0236E02.1" gen_strand="+" ref_id="SGN-E258539" ref_strand="+">
        <total_alignment_score>0.995</total_alignment_score>
        <cumulative_length_of_scored_exons>742</cumulative_length_of_scored_exons>
        <coverage percentage="1.001" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0236E02.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E258539" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="67925" e_stop="68305"/>
          <exon e_start="69047" e_stop="69171"/>
          <exon e_start="69407" e_stop="69519"/>
          <exon e_start="69631" e_stop="69753"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGGATTGACAGTAGCAGAGGTCACTGGAAGCAATACTGTCTCAGTTGCGGAAGATGAACTGATGCGAATCTTAATTCTTGTCCGAAATTTCTTACCTGGACATCATCAGGTTATCAATGGGGAGTGGAATGTTGCTGCAATTGCGCACAGAGCTTATGATTTGGAAGGCAAGACTGTTGGAACTGTTGGTGCAGGACGTATTGGCAGACTTTTACTCCAGCGATTGAAGCCATTTAACTGTAATCTACTTTACCATGACCGTCTTAAGATGGATTCTGAGCTAGAGAATCAAATTGGAGCAAAGTTTGAGGAAGATCTCGATAAGATGCTCTCGAAATGTGACATAGTGGTCATCAATACGCCTCTTACAGAGAAAACAAAGTAAGGTTTCTGTTTCTGTAATTACCCGTCGTAAACCTATACAATAATATTTATTGACAAAGCTTCTTATATTCAAGTTATTTTAACAATGACTTAATTATGAAATGAACTAAGTAAGCTAAAGTGAATATTCATTGAGAATGAAATATGATATTTAGCGAAGGGAAGGAGAATCTTTGGTGTCATCGTAATTTTTTGGTATCACTCTAGATCATATATAAAGTAGTTGTATATTTAGATTCCCCGATTGTATTCCCTAAGTTAAGAAATTCTCTTGAGCATCCACCATATACTATGATACATGACTTTGGCTAAGCTCAAAAAGACTATCTCAATGATGGCCCTCCATGGATTCTCCACCTATATAAGCCACGGCTAAAGAAAAATTGCTTGGCCAAGTTGTCTTTTACCTTTGGCATGATGCAAAAAACATTTGATATTCTTTCTGTGTGAACCACTGCTACGAGTAATATGTTCTTAGAGATCATGTTTTCTTTTTGTTCTTCCTTTAATTTTCTATTTGAAGATTTGTCATCAGTTAGAGGTCATCGGTAGGATGATAGATGTTCTCAGCAACTTGTGTTGCCAGAATAATATGATTGCCAATGGAGTATTTTTAAGATTCTTGGAGATGTAAGAGTTGTTTCTGTCCATACATCACTCTTCTCATGTCACTAAGGTCATTGATTGTTTCCATGTGCTATATCGCAAATTGCTCACAATTTTAACTATGTGATCCAGAGGAATGTTTGACAAGGAAAGAATTGCAAAGTTGAAGAAGGGAGTTCTAATTGTAAACAATGCTCGAGGAGCAATTATGGACACTCAAGCAGTTGTTGATGCTTGTAACAGCGGTCATATTGCAGGTATTTTAACATAACTTGAACACATCATCCAGAGATGAGCCCTCAGCCTTAATATCAATTGAACACACCATTATATTTTTTTCTTCAATTCTTGCTTGTTTCTTTTCTTCAATATATTTTATCGACATTTGGAAGTAGTTCCATATCTTGTGGAATTGCCGAATCCTTTGAAGAAAGAAGTACTTCTAAAACTATATTGAGTTCTTTTCTTTCGGTTATTTCCCCCCAAATTTAGGATACAGTGGAGATGTTTGGTACCCACAACCAGCTCCCAAGGACCATCTATGGCGTTACATGCCAAACCAAGCTATGACTCCTCACATTTCTGGGACTACCATTGATGCACAGGTTTGTAAATACTCTGTTTCTCTAATTTCTTTAGGCTTTGCTTTTTCTTTACTTTCACGACATTATAATTGCGATTAAACTGAGAGAAGCTTGTTACTTTCAATTTCGCAGTTGAGGTATGCAGCTGGAACAAAGGATATGTTGGACAGGTACTTCAAGGGTGAGGATTTCCCTGCTGAAAATTACATTGTCAAGGATGGGGAATTGGCACCTCAGTATCGCTAAATTATTTAT</genome_strand>
        <mrna_strand>TGGATTGACAGTAGCAGAGGTCACTGGAAGCAATACTGTCTCAGTTGCGGAAGATGAACTGATGCGAATCTTAATTCTTGTCCGAAATTTCTTACCTGGACATCATCAGGTTATCAATGGGGAGTGGAATGTTGCTGCAATTGCGCACAGAGCTTATGATTTGGAAGGCAAGACTGTTGGAACTGTTGGTGCAGGACGTATTGGCAGACTTTTACTCCAGCGATTGAAGCCATTTAACTGTAATCTACTTTACCATGACCGTCTTAAGATGGATTCTGAGCTAGAGAATCAAATTGGAGCAAAGTTTGAGGAAGATCTCGATAAGATGCTCTCGAAATGTGACATAGTGGTCATCAATACGCCTCTTACAGAGAAAACAAA.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGGAATGTTTGACAAGGAAAGAATTGCAAAGTTGAAGAAGGGAGTTCTAATTGTAAACAATGCTCGAGGAGCAATTATGGACACTCAAGCAGTTGTTGATGCTTGTAACAGCGGTCATATTGCAG...........................................................................................................................................................................................................................................GATACAGTGGAGATGTTTGGTACCCACAACCAGCTCCCAAGGACCATCTATGGCGTTACATGCCAAACCAAGCTATGACTCCTCACATTTCTGGGACTACCATTGATGCACAG...............................................................................................................TTGAGGTATGCAGCTGGAACAAAGGATATGTTGGACAGGTACTTCAAGGGTGAGGATTTCCCTGCTGAAAA-TACATTGTNCAAGATGGGGAATTGGCACCTCAGTATCGCTAAATTATTTAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0236E02-u8qcS/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E260604" ref_strand="+" ref_description="SGN-E260604 [cLEG-54-N16]">
      <seq>attgacagtatcagacgtcactgtaagcaatactgtctcagttgcggaagtatgaactgatgcgaatcttaattcttgtccgaaatttcttacctggacatcatcagggtatctatggggagtggaatgttgctgcaattgcgcacagagcttatgatttggaaggcaagactgttggaactgttggtgcaggacgtattggcagacttttactccagcgattgaagccatttaactgtaatctactttaccatgaccgtcttaagatggattctgagctagagaatctaattggagcaaagtttgaggaagatctcgataagatgctctctaaatgtgacatattggtcatcaatacgcctcttacagagaaaacaaaacgaatgtttgacaaggaaagaattgcaaagttgaagaagggagttctaattgtaaacaatgctcgaggagcaattatggacactcaagcagttgctgatgcttgtaacagcggtcatattgcacgatacagtggagatgtttggtacccacaaccatctcccaaggaccttttatggcgttacatgcccaaccaagctatgactcctcacattttctgggactacaattgat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0236E02-u8qcS/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0236E02.1" temp_strand="+" temp_description="C02HBa0236E02.1  AC215430.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0236E02 sequenced_by:kribb upload_account_name:korea">
        <position start="67628" stop="69813"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="67928" g_stop="68305" g_length="378"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="379" r_length="379" r_score="0.974"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="68306" i_stop="69046" i_length="741">
            <donor d_prob="0.995" d_score="0.96"/>
            <acceptor a_prob="0.768" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="69047" g_stop="69171" g_length="125"/>
          <reference_exon_boundary r_type="cDNA" r_start="380" r_stop="504" r_length="125" r_score="0.976"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="69172" i_stop="69406" i_length="235">
            <donor d_prob="0.983" d_score="0.96"/>
            <acceptor a_prob="0.964" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="69407" g_stop="69513" g_length="107"/>
          <reference_exon_boundary r_type="cDNA" r_start="505" r_stop="612" r_length="108" r_score="0.935"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0236E02.1" gen_strand="+" ref_id="SGN-E260604" ref_strand="+">
        <total_alignment_score>0.967</total_alignment_score>
        <cumulative_length_of_scored_exons>610</cumulative_length_of_scored_exons>
        <coverage percentage="0.997" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0236E02.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E260604" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="67928" e_stop="68305"/>
          <exon e_start="69047" e_stop="69171"/>
          <exon e_start="69407" e_stop="69513"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATTGACAGTAGCAGAGGTCACTGGAAGCAATACTGTCTCAGTTGCGGAAG-ATGAACTGATGCGAATCTTAATTCTTGTCCGAAATTTCTTACCTGGACATCATCAGGTTATCAATGGGGAGTGGAATGTTGCTGCAATTGCGCACAGAGCTTATGATTTGGAAGGCAAGACTGTTGGAACTGTTGGTGCAGGACGTATTGGCAGACTTTTACTCCAGCGATTGAAGCCATTTAACTGTAATCTACTTTACCATGACCGTCTTAAGATGGATTCTGAGCTAGAGAATCAAATTGGAGCAAAGTTTGAGGAAGATCTCGATAAGATGCTCTCGAAATGTGACATAGTGGTCATCAATACGCCTCTTACAGAGAAAACAAAGTAAGGTTTCTGTTTCTGTAATTACCCGTCGTAAACCTATACAATAATATTTATTGACAAAGCTTCTTATATTCAAGTTATTTTAACAATGACTTAATTATGAAATGAACTAAGTAAGCTAAAGTGAATATTCATTGAGAATGAAATATGATATTTAGCGAAGGGAAGGAGAATCTTTGGTGTCATCGTAATTTTTTGGTATCACTCTAGATCATATATAAAGTAGTTGTATATTTAGATTCCCCGATTGTATTCCCTAAGTTAAGAAATTCTCTTGAGCATCCACCATATACTATGATACATGACTTTGGCTAAGCTCAAAAAGACTATCTCAATGATGGCCCTCCATGGATTCTCCACCTATATAAGCCACGGCTAAAGAAAAATTGCTTGGCCAAGTTGTCTTTTACCTTTGGCATGATGCAAAAAACATTTGATATTCTTTCTGTGTGAACCACTGCTACGAGTAATATGTTCTTAGAGATCATGTTTTCTTTTTGTTCTTCCTTTAATTTTCTATTTGAAGATTTGTCATCAGTTAGAGGTCATCGGTAGGATGATAGATGTTCTCAGCAACTTGTGTTGCCAGAATAATATGATTGCCAATGGAGTATTTTTAAGATTCTTGGAGATGTAAGAGTTGTTTCTGTCCATACATCACTCTTCTCATGTCACTAAGGTCATTGATTGTTTCCATGTGCTATATCGCAAATTGCTCACAATTTTAACTATGTGATCCAGAGGAATGTTTGACAAGGAAAGAATTGCAAAGTTGAAGAAGGGAGTTCTAATTGTAAACAATGCTCGAGGAGCAATTATGGACACTCAAGCAGTTGTTGATGCTTGTAACAGCGGTCATATTGCAGGTATTTTAACATAACTTGAACACATCATCCAGAGATGAGCCCTCAGCCTTAATATCAATTGAACACACCATTATATTTTTTTCTTCAATTCTTGCTTGTTTCTTTTCTTCAATATATTTTATCGACATTTGGAAGTAGTTCCATATCTTGTGGAATTGCCGAATCCTTTGAAGAAAGAAGTACTTCTAAAACTATATTGAGTTCTTTTCTTTCGGTTATTTCCCCCCAAATTTAGGATACAGTGGAGATGTTTGGTACCCACAACCAGCTCCCAAGGACCATCTATGGCGTTACATGCCAAACCAAGCTATGACTCCTCACA-TTTCTGGGACTACCATTGAT</genome_strand>
        <mrna_strand>ATTGACAGTATCAGACGTCACTGTAAGCAATACTGTCTCAGTTGCGGAAGTATGAACTGATGCGAATCTTAATTCTTGTCCGAAATTTCTTACCTGGACATCATCAGGGTATCTATGGGGAGTGGAATGTTGCTGCAATTGCGCACAGAGCTTATGATTTGGAAGGCAAGACTGTTGGAACTGTTGGTGCAGGACGTATTGGCAGACTTTTACTCCAGCGATTGAAGCCATTTAACTGTAATCTACTTTACCATGACCGTCTTAAGATGGATTCTGAGCTAGAGAATCTAATTGGAGCAAAGTTTGAGGAAGATCTCGATAAGATGCTCTCTAAATGTGACATATTGGTCATCAATACGCCTCTTACAGAGAAAACAAA.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACGAATGTTTGACAAGGAAAGAATTGCAAAGTTGAAGAAGGGAGTTCTAATTGTAAACAATGCTCGAGGAGCAATTATGGACACTCAAGCAGTTGCTGATGCTTGTAACAGCGGTCATATTGCAC...........................................................................................................................................................................................................................................GATACAGTGGAGATGTTTGGTACCCACAACCATCTCCCAAGGACCTTTTATGGCGTTACATGCCCAACCAAGCTATGACTCCTCACATTTTCTGGGACTACAATTGAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0236E02-u8qcS/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E456668" ref_strand="+" ref_description="SGN-E456668 [cSTS-30-O3]">
      <seq>gacagtagcagaggtcactggaagcaatactgtctcagttgcggaagatgaactgatgcgaatcttaattcttgtccgaaatttcttgcctggacatcatcaggttatcaatggggagtggaatgttgctgcaattgcgcacagagcttatgatttggaaggcaagactgttggaactgttggtgcaggacgtattggcagacttttactccaacgattgaagccatttaactgtaatctactttaccatgaccgtcttaagatggattctgagctagagaatcaaattggagcaaagttcgaggaagatctcgataagatgctctcgaaatgtgacattgtggtcatcaatacgcctcttacagagaaaacaaaaggaatgtttgacaaggaaagaattgcaaagttgaagaagggagttctaattgtaaacaatgctcgaggagcaattatggacactcaagcagttgttgatgcttgtaacagcggtcatattgcaggatacagtggagatgttttggtacccacaaccagctcccaaggaccatccatggcgctacatgccaaaccaagctatgactcctcacatttctgggactaccattgatgcacagttgaggtatgcagctggaacaaaggatatgttggacaggtacttnaagggtgaggatttccctgc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0236E02-u8qcS/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0236E02.1" temp_strand="+" temp_description="C02HBa0236E02.1  AC215430.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0236E02 sequenced_by:kribb upload_account_name:korea">
        <position start="67631" stop="69995"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="67931" g_stop="68305" g_length="375"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="375" r_length="375" r_score="0.989"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="68306" i_stop="69046" i_length="741">
            <donor d_prob="0.995" d_score="0.98"/>
            <acceptor a_prob="0.768" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="69047" g_stop="69171" g_length="125"/>
          <reference_exon_boundary r_type="cDNA" r_start="376" r_stop="500" r_length="125" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="69172" i_stop="69406" i_length="235">
            <donor d_prob="0.983" d_score="1.00"/>
            <acceptor a_prob="0.964" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="69407" g_stop="69519" g_length="113"/>
          <reference_exon_boundary r_type="cDNA" r_start="501" r_stop="614" r_length="114" r_score="0.965"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="69520" i_stop="69630" i_length="111">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.989" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="69631" g_stop="69695" g_length="65"/>
          <reference_exon_boundary r_type="cDNA" r_start="615" r_stop="679" r_length="65" r_score="0.985"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0236E02.1" gen_strand="+" ref_id="SGN-E456668" ref_strand="+">
        <total_alignment_score>0.987</total_alignment_score>
        <cumulative_length_of_scored_exons>678</cumulative_length_of_scored_exons>
        <coverage percentage="0.999" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0236E02.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E456668" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="67931" e_stop="68305"/>
          <exon e_start="69047" e_stop="69171"/>
          <exon e_start="69407" e_stop="69519"/>
          <exon e_start="69631" e_stop="69695"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GACAGTAGCAGAGGTCACTGGAAGCAATACTGTCTCAGTTGCGGAAGATGAACTGATGCGAATCTTAATTCTTGTCCGAAATTTCTTACCTGGACATCATCAGGTTATCAATGGGGAGTGGAATGTTGCTGCAATTGCGCACAGAGCTTATGATTTGGAAGGCAAGACTGTTGGAACTGTTGGTGCAGGACGTATTGGCAGACTTTTACTCCAGCGATTGAAGCCATTTAACTGTAATCTACTTTACCATGACCGTCTTAAGATGGATTCTGAGCTAGAGAATCAAATTGGAGCAAAGTTTGAGGAAGATCTCGATAAGATGCTCTCGAAATGTGACATAGTGGTCATCAATACGCCTCTTACAGAGAAAACAAAGTAAGGTTTCTGTTTCTGTAATTACCCGTCGTAAACCTATACAATAATATTTATTGACAAAGCTTCTTATATTCAAGTTATTTTAACAATGACTTAATTATGAAATGAACTAAGTAAGCTAAAGTGAATATTCATTGAGAATGAAATATGATATTTAGCGAAGGGAAGGAGAATCTTTGGTGTCATCGTAATTTTTTGGTATCACTCTAGATCATATATAAAGTAGTTGTATATTTAGATTCCCCGATTGTATTCCCTAAGTTAAGAAATTCTCTTGAGCATCCACCATATACTATGATACATGACTTTGGCTAAGCTCAAAAAGACTATCTCAATGATGGCCCTCCATGGATTCTCCACCTATATAAGCCACGGCTAAAGAAAAATTGCTTGGCCAAGTTGTCTTTTACCTTTGGCATGATGCAAAAAACATTTGATATTCTTTCTGTGTGAACCACTGCTACGAGTAATATGTTCTTAGAGATCATGTTTTCTTTTTGTTCTTCCTTTAATTTTCTATTTGAAGATTTGTCATCAGTTAGAGGTCATCGGTAGGATGATAGATGTTCTCAGCAACTTGTGTTGCCAGAATAATATGATTGCCAATGGAGTATTTTTAAGATTCTTGGAGATGTAAGAGTTGTTTCTGTCCATACATCACTCTTCTCATGTCACTAAGGTCATTGATTGTTTCCATGTGCTATATCGCAAATTGCTCACAATTTTAACTATGTGATCCAGAGGAATGTTTGACAAGGAAAGAATTGCAAAGTTGAAGAAGGGAGTTCTAATTGTAAACAATGCTCGAGGAGCAATTATGGACACTCAAGCAGTTGTTGATGCTTGTAACAGCGGTCATATTGCAGGTATTTTAACATAACTTGAACACATCATCCAGAGATGAGCCCTCAGCCTTAATATCAATTGAACACACCATTATATTTTTTTCTTCAATTCTTGCTTGTTTCTTTTCTTCAATATATTTTATCGACATTTGGAAGTAGTTCCATATCTTGTGGAATTGCCGAATCCTTTGAAGAAAGAAGTACTTCTAAAACTATATTGAGTTCTTTTCTTTCGGTTATTTCCCCCCAAATTTAGGATACAGTGGAGATG-TTTGGTACCCACAACCAGCTCCCAAGGACCATCTATGGCGTTACATGCCAAACCAAGCTATGACTCCTCACATTTCTGGGACTACCATTGATGCACAGGTTTGTAAATACTCTGTTTCTCTAATTTCTTTAGGCTTTGCTTTTTCTTTACTTTCACGACATTATAATTGCGATTAAACTGAGAGAAGCTTGTTACTTTCAATTTCGCAGTTGAGGTATGCAGCTGGAACAAAGGATATGTTGGACAGGTACTTCAAGGGTGAGGATTTCCCTGC</genome_strand>
        <mrna_strand>GACAGTAGCAGAGGTCACTGGAAGCAATACTGTCTCAGTTGCGGAAGATGAACTGATGCGAATCTTAATTCTTGTCCGAAATTTCTTGCCTGGACATCATCAGGTTATCAATGGGGAGTGGAATGTTGCTGCAATTGCGCACAGAGCTTATGATTTGGAAGGCAAGACTGTTGGAACTGTTGGTGCAGGACGTATTGGCAGACTTTTACTCCAACGATTGAAGCCATTTAACTGTAATCTACTTTACCATGACCGTCTTAAGATGGATTCTGAGCTAGAGAATCAAATTGGAGCAAAGTTCGAGGAAGATCTCGATAAGATGCTCTCGAAATGTGACATTGTGGTCATCAATACGCCTCTTACAGAGAAAACAAA.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGGAATGTTTGACAAGGAAAGAATTGCAAAGTTGAAGAAGGGAGTTCTAATTGTAAACAATGCTCGAGGAGCAATTATGGACACTCAAGCAGTTGTTGATGCTTGTAACAGCGGTCATATTGCAG...........................................................................................................................................................................................................................................GATACAGTGGAGATGTTTTGGTACCCACAACCAGCTCCCAAGGACCATCCATGGCGCTACATGCCAAACCAAGCTATGACTCCTCACATTTCTGGGACTACCATTGATGCACAG...............................................................................................................TTGAGGTATGCAGCTGGAACAAAGGATATGTTGGACAGGTACTTNAAGGGTGAGGATTTCCCTGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0236E02-u8qcS/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E452526" ref_strand="+" ref_description="SGN-E452526 [cSTS-17-I17]">
      <seq>gacagtagcagaggtcactggaagcaatactgtctcagttgcggaagatgaactgatgcgaatcttaattcttgtccgaaatttcttgcctggacatcatcaggttatcaatggggagtggaatgttgctgcaattgcgcacagagcttatgatttggaaggcaagactgttggaactgttggtgcaggacgtattggcagacttttactccaacgattgaagccatttaactgtaatctactttaccatgaccgtcttaagatggattctgagctagagaatcaaattggagcaaagttcgaggaagatctcgataagatgctctcgaaatgtgacattgtggtcatcaatacgcctcttacagagaaaacaaaaggaatgtttgacaaggaaagaattgcaaagttgaagaagggagttctaattgtaaacaatgctcgaggagcaattatggacactcaagcagttgttgatgcttgtaacagcggtcatattgcaggatacagtggagatgtttggtacccacaaccagctcccaaggaccatccatggcgctacatgccaaaccaagctatgactcctcacatttctgggactaccattgatgcacagttgaggtatgcagctggaac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0236E02-u8qcS/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0236E02.1" temp_strand="+" temp_description="C02HBa0236E02.1  AC215430.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0236E02 sequenced_by:kribb upload_account_name:korea">
        <position start="67631" stop="69837"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="67931" g_stop="68305" g_length="375"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="375" r_length="375" r_score="0.989"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="68306" i_stop="69046" i_length="741">
            <donor d_prob="0.995" d_score="0.98"/>
            <acceptor a_prob="0.768" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="69047" g_stop="69171" g_length="125"/>
          <reference_exon_boundary r_type="cDNA" r_start="376" r_stop="500" r_length="125" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="69172" i_stop="69406" i_length="235">
            <donor d_prob="0.983" d_score="1.00"/>
            <acceptor a_prob="0.964" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="69407" g_stop="69519" g_length="113"/>
          <reference_exon_boundary r_type="cDNA" r_start="501" r_stop="613" r_length="113" r_score="0.982"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="69520" i_stop="69630" i_length="111">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.989" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="69631" g_stop="69650" g_length="20"/>
          <reference_exon_boundary r_type="cDNA" r_start="614" r_stop="633" r_length="20" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0236E02.1" gen_strand="+" ref_id="SGN-E452526" ref_strand="+">
        <total_alignment_score>0.990</total_alignment_score>
        <cumulative_length_of_scored_exons>633</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0236E02.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E452526" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="67931" e_stop="68305"/>
          <exon e_start="69047" e_stop="69171"/>
          <exon e_start="69407" e_stop="69519"/>
          <exon e_start="69631" e_stop="69650"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GACAGTAGCAGAGGTCACTGGAAGCAATACTGTCTCAGTTGCGGAAGATGAACTGATGCGAATCTTAATTCTTGTCCGAAATTTCTTACCTGGACATCATCAGGTTATCAATGGGGAGTGGAATGTTGCTGCAATTGCGCACAGAGCTTATGATTTGGAAGGCAAGACTGTTGGAACTGTTGGTGCAGGACGTATTGGCAGACTTTTACTCCAGCGATTGAAGCCATTTAACTGTAATCTACTTTACCATGACCGTCTTAAGATGGATTCTGAGCTAGAGAATCAAATTGGAGCAAAGTTTGAGGAAGATCTCGATAAGATGCTCTCGAAATGTGACATAGTGGTCATCAATACGCCTCTTACAGAGAAAACAAAGTAAGGTTTCTGTTTCTGTAATTACCCGTCGTAAACCTATACAATAATATTTATTGACAAAGCTTCTTATATTCAAGTTATTTTAACAATGACTTAATTATGAAATGAACTAAGTAAGCTAAAGTGAATATTCATTGAGAATGAAATATGATATTTAGCGAAGGGAAGGAGAATCTTTGGTGTCATCGTAATTTTTTGGTATCACTCTAGATCATATATAAAGTAGTTGTATATTTAGATTCCCCGATTGTATTCCCTAAGTTAAGAAATTCTCTTGAGCATCCACCATATACTATGATACATGACTTTGGCTAAGCTCAAAAAGACTATCTCAATGATGGCCCTCCATGGATTCTCCACCTATATAAGCCACGGCTAAAGAAAAATTGCTTGGCCAAGTTGTCTTTTACCTTTGGCATGATGCAAAAAACATTTGATATTCTTTCTGTGTGAACCACTGCTACGAGTAATATGTTCTTAGAGATCATGTTTTCTTTTTGTTCTTCCTTTAATTTTCTATTTGAAGATTTGTCATCAGTTAGAGGTCATCGGTAGGATGATAGATGTTCTCAGCAACTTGTGTTGCCAGAATAATATGATTGCCAATGGAGTATTTTTAAGATTCTTGGAGATGTAAGAGTTGTTTCTGTCCATACATCACTCTTCTCATGTCACTAAGGTCATTGATTGTTTCCATGTGCTATATCGCAAATTGCTCACAATTTTAACTATGTGATCCAGAGGAATGTTTGACAAGGAAAGAATTGCAAAGTTGAAGAAGGGAGTTCTAATTGTAAACAATGCTCGAGGAGCAATTATGGACACTCAAGCAGTTGTTGATGCTTGTAACAGCGGTCATATTGCAGGTATTTTAACATAACTTGAACACATCATCCAGAGATGAGCCCTCAGCCTTAATATCAATTGAACACACCATTATATTTTTTTCTTCAATTCTTGCTTGTTTCTTTTCTTCAATATATTTTATCGACATTTGGAAGTAGTTCCATATCTTGTGGAATTGCCGAATCCTTTGAAGAAAGAAGTACTTCTAAAACTATATTGAGTTCTTTTCTTTCGGTTATTTCCCCCCAAATTTAGGATACAGTGGAGATGTTTGGTACCCACAACCAGCTCCCAAGGACCATCTATGGCGTTACATGCCAAACCAAGCTATGACTCCTCACATTTCTGGGACTACCATTGATGCACAGGTTTGTAAATACTCTGTTTCTCTAATTTCTTTAGGCTTTGCTTTTTCTTTACTTTCACGACATTATAATTGCGATTAAACTGAGAGAAGCTTGTTACTTTCAATTTCGCAGTTGAGGTATGCAGCTGGAAC</genome_strand>
        <mrna_strand>GACAGTAGCAGAGGTCACTGGAAGCAATACTGTCTCAGTTGCGGAAGATGAACTGATGCGAATCTTAATTCTTGTCCGAAATTTCTTGCCTGGACATCATCAGGTTATCAATGGGGAGTGGAATGTTGCTGCAATTGCGCACAGAGCTTATGATTTGGAAGGCAAGACTGTTGGAACTGTTGGTGCAGGACGTATTGGCAGACTTTTACTCCAACGATTGAAGCCATTTAACTGTAATCTACTTTACCATGACCGTCTTAAGATGGATTCTGAGCTAGAGAATCAAATTGGAGCAAAGTTCGAGGAAGATCTCGATAAGATGCTCTCGAAATGTGACATTGTGGTCATCAATACGCCTCTTACAGAGAAAACAAA.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGGAATGTTTGACAAGGAAAGAATTGCAAAGTTGAAGAAGGGAGTTCTAATTGTAAACAATGCTCGAGGAGCAATTATGGACACTCAAGCAGTTGTTGATGCTTGTAACAGCGGTCATATTGCAG...........................................................................................................................................................................................................................................GATACAGTGGAGATGTTTGGTACCCACAACCAGCTCCCAAGGACCATCCATGGCGCTACATGCCAAACCAAGCTATGACTCCTCACATTTCTGGGACTACCATTGATGCACAG...............................................................................................................TTGAGGTATGCAGCTGGAAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0236E02-u8qcS/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E234524" ref_strand="+" ref_description="SGN-E234524 [cLEL-6-F23](-)">
      <seq>agtagcagaggtcactggaagcaatactgtctcagttgcggaagatgaactgatgcgaatcttaattcttgtccgaaatttcttacctggacatcatcaggttatcaatggggagtggaatgttgctgcaattgcgcacagagcttatgatttggaaggcaagactgttggaactgttggtgcaggacgtattggcagacttttactccagcgattgaagccatttaactgtaatctactttaccatgaccgtcttaagatggattctgagctagagaatcaaattggagcaaagtttgaggaagatctcgataagatgctctcgaaatgtgacatagtggtcatcaatacgcctcttacagagaaaacaaaaggaatgtttgacaaggaaagaattgcaaagttgaagaagggagttctaattgtaaacaat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0236E02-u8qcS/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0236E02.1" temp_strand="+" temp_description="C02HBa0236E02.1  AC215430.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0236E02 sequenced_by:kribb upload_account_name:korea">
        <position start="67634" stop="69407"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="67934" g_stop="68305" g_length="372"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="372" r_length="372" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="68306" i_stop="69046" i_length="741">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.768" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="69047" g_stop="69107" g_length="61"/>
          <reference_exon_boundary r_type="cDNA" r_start="373" r_stop="433" r_length="61" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0236E02.1" gen_strand="+" ref_id="SGN-E234524" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>433</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0236E02.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E234524" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="67934" e_stop="68305"/>
          <exon e_start="69047" e_stop="69107"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGTAGCAGAGGTCACTGGAAGCAATACTGTCTCAGTTGCGGAAGATGAACTGATGCGAATCTTAATTCTTGTCCGAAATTTCTTACCTGGACATCATCAGGTTATCAATGGGGAGTGGAATGTTGCTGCAATTGCGCACAGAGCTTATGATTTGGAAGGCAAGACTGTTGGAACTGTTGGTGCAGGACGTATTGGCAGACTTTTACTCCAGCGATTGAAGCCATTTAACTGTAATCTACTTTACCATGACCGTCTTAAGATGGATTCTGAGCTAGAGAATCAAATTGGAGCAAAGTTTGAGGAAGATCTCGATAAGATGCTCTCGAAATGTGACATAGTGGTCATCAATACGCCTCTTACAGAGAAAACAAAGTAAGGTTTCTGTTTCTGTAATTACCCGTCGTAAACCTATACAATAATATTTATTGACAAAGCTTCTTATATTCAAGTTATTTTAACAATGACTTAATTATGAAATGAACTAAGTAAGCTAAAGTGAATATTCATTGAGAATGAAATATGATATTTAGCGAAGGGAAGGAGAATCTTTGGTGTCATCGTAATTTTTTGGTATCACTCTAGATCATATATAAAGTAGTTGTATATTTAGATTCCCCGATTGTATTCCCTAAGTTAAGAAATTCTCTTGAGCATCCACCATATACTATGATACATGACTTTGGCTAAGCTCAAAAAGACTATCTCAATGATGGCCCTCCATGGATTCTCCACCTATATAAGCCACGGCTAAAGAAAAATTGCTTGGCCAAGTTGTCTTTTACCTTTGGCATGATGCAAAAAACATTTGATATTCTTTCTGTGTGAACCACTGCTACGAGTAATATGTTCTTAGAGATCATGTTTTCTTTTTGTTCTTCCTTTAATTTTCTATTTGAAGATTTGTCATCAGTTAGAGGTCATCGGTAGGATGATAGATGTTCTCAGCAACTTGTGTTGCCAGAATAATATGATTGCCAATGGAGTATTTTTAAGATTCTTGGAGATGTAAGAGTTGTTTCTGTCCATACATCACTCTTCTCATGTCACTAAGGTCATTGATTGTTTCCATGTGCTATATCGCAAATTGCTCACAATTTTAACTATGTGATCCAGAGGAATGTTTGACAAGGAAAGAATTGCAAAGTTGAAGAAGGGAGTTCTAATTGTAAACAAT</genome_strand>
        <mrna_strand>AGTAGCAGAGGTCACTGGAAGCAATACTGTCTCAGTTGCGGAAGATGAACTGATGCGAATCTTAATTCTTGTCCGAAATTTCTTACCTGGACATCATCAGGTTATCAATGGGGAGTGGAATGTTGCTGCAATTGCGCACAGAGCTTATGATTTGGAAGGCAAGACTGTTGGAACTGTTGGTGCAGGACGTATTGGCAGACTTTTACTCCAGCGATTGAAGCCATTTAACTGTAATCTACTTTACCATGACCGTCTTAAGATGGATTCTGAGCTAGAGAATCAAATTGGAGCAAAGTTTGAGGAAGATCTCGATAAGATGCTCTCGAAATGTGACATAGTGGTCATCAATACGCCTCTTACAGAGAAAACAAA.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGGAATGTTTGACAAGGAAAGAATTGCAAAGTTGAAGAAGGGAGTTCTAATTGTAAACAAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0236E02-u8qcS/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E708489" ref_strand="+" ref_description="SGN-E708489 [FA35DF06]">
      <seq>cagctgaggtcactggaagcaatactgtctcagttgcggaagatgaactgatgcgaatcttaattcttgtccgaaatttcttacctggacatcatcaggttatcaatggggagtggaatgttgctgcaattgcgcacagagcttatgatttggaaggcaagactgttggaactgttggtgcaggacgtattggcagacttttactccagcgattgaagccatttaactgtaatctactttaccatgaccgtcttaagatggattctgagctagagaatcaaattggagcaaagtttgaggaagatctcgataagatgctctcgaaatgtgacatagtggtcatcaatacgcctcttacagagaaaacaaaaggaatgtttgacaaggaaagaattgcaaagttgaagaagggagttctaattgtaaacaatgctcgaggagcaattatggacactcaagcagttgttgatgcttgtaacagcggtcatattgcaggatacagtggagatgtttggtacccacaaccagctcccaaggaccatctatggcgttacatgccaaaccaagctatgactcctcacatttctgggactaccattgatgcacagttgaggtatgcagctggaacaaaggatatgttggacaggtacttcaagggtgaggatttccctgctgaaaattacattgtcaaggatggggaattggcacctcagtatcgctaaattatttatgtatagagttgtgtctagatttctgtgttaaataaactggcaagccgtgtcttcaataagctgataaaattggctactttatgttcttctagaactctaatgcagtttttctccggg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0236E02-u8qcS/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0236E02.1" temp_strand="+" temp_description="C02HBa0236E02.1  AC215430.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0236E02 sequenced_by:kribb upload_account_name:korea">
        <position start="67637" stop="70170"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="67936" g_stop="68305" g_length="370"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="370" r_length="370" r_score="0.995"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="68306" i_stop="69046" i_length="741">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.768" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="69047" g_stop="69171" g_length="125"/>
          <reference_exon_boundary r_type="cDNA" r_start="371" r_stop="495" r_length="125" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="69172" i_stop="69406" i_length="235">
            <donor d_prob="0.983" d_score="1.00"/>
            <acceptor a_prob="0.964" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="69407" g_stop="69519" g_length="113"/>
          <reference_exon_boundary r_type="cDNA" r_start="496" r_stop="608" r_length="113" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="69520" i_stop="69630" i_length="111">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.989" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="69631" g_stop="69870" g_length="240"/>
          <reference_exon_boundary r_type="cDNA" r_start="609" r_stop="848" r_length="240" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0236E02.1" gen_strand="+" ref_id="SGN-E708489" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>848</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0236E02.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E708489" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="67936" e_stop="68305"/>
          <exon e_start="69047" e_stop="69171"/>
          <exon e_start="69407" e_stop="69519"/>
          <exon e_start="69631" e_stop="69870"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TAGCAGAGGTCACTGGAAGCAATACTGTCTCAGTTGCGGAAGATGAACTGATGCGAATCTTAATTCTTGTCCGAAATTTCTTACCTGGACATCATCAGGTTATCAATGGGGAGTGGAATGTTGCTGCAATTGCGCACAGAGCTTATGATTTGGAAGGCAAGACTGTTGGAACTGTTGGTGCAGGACGTATTGGCAGACTTTTACTCCAGCGATTGAAGCCATTTAACTGTAATCTACTTTACCATGACCGTCTTAAGATGGATTCTGAGCTAGAGAATCAAATTGGAGCAAAGTTTGAGGAAGATCTCGATAAGATGCTCTCGAAATGTGACATAGTGGTCATCAATACGCCTCTTACAGAGAAAACAAAGTAAGGTTTCTGTTTCTGTAATTACCCGTCGTAAACCTATACAATAATATTTATTGACAAAGCTTCTTATATTCAAGTTATTTTAACAATGACTTAATTATGAAATGAACTAAGTAAGCTAAAGTGAATATTCATTGAGAATGAAATATGATATTTAGCGAAGGGAAGGAGAATCTTTGGTGTCATCGTAATTTTTTGGTATCACTCTAGATCATATATAAAGTAGTTGTATATTTAGATTCCCCGATTGTATTCCCTAAGTTAAGAAATTCTCTTGAGCATCCACCATATACTATGATACATGACTTTGGCTAAGCTCAAAAAGACTATCTCAATGATGGCCCTCCATGGATTCTCCACCTATATAAGCCACGGCTAAAGAAAAATTGCTTGGCCAAGTTGTCTTTTACCTTTGGCATGATGCAAAAAACATTTGATATTCTTTCTGTGTGAACCACTGCTACGAGTAATATGTTCTTAGAGATCATGTTTTCTTTTTGTTCTTCCTTTAATTTTCTATTTGAAGATTTGTCATCAGTTAGAGGTCATCGGTAGGATGATAGATGTTCTCAGCAACTTGTGTTGCCAGAATAATATGATTGCCAATGGAGTATTTTTAAGATTCTTGGAGATGTAAGAGTTGTTTCTGTCCATACATCACTCTTCTCATGTCACTAAGGTCATTGATTGTTTCCATGTGCTATATCGCAAATTGCTCACAATTTTAACTATGTGATCCAGAGGAATGTTTGACAAGGAAAGAATTGCAAAGTTGAAGAAGGGAGTTCTAATTGTAAACAATGCTCGAGGAGCAATTATGGACACTCAAGCAGTTGTTGATGCTTGTAACAGCGGTCATATTGCAGGTATTTTAACATAACTTGAACACATCATCCAGAGATGAGCCCTCAGCCTTAATATCAATTGAACACACCATTATATTTTTTTCTTCAATTCTTGCTTGTTTCTTTTCTTCAATATATTTTATCGACATTTGGAAGTAGTTCCATATCTTGTGGAATTGCCGAATCCTTTGAAGAAAGAAGTACTTCTAAAACTATATTGAGTTCTTTTCTTTCGGTTATTTCCCCCCAAATTTAGGATACAGTGGAGATGTTTGGTACCCACAACCAGCTCCCAAGGACCATCTATGGCGTTACATGCCAAACCAAGCTATGACTCCTCACATTTCTGGGACTACCATTGATGCACAGGTTTGTAAATACTCTGTTTCTCTAATTTCTTTAGGCTTTGCTTTTTCTTTACTTTCACGACATTATAATTGCGATTAAACTGAGAGAAGCTTGTTACTTTCAATTTCGCAGTTGAGGTATGCAGCTGGAACAAAGGATATGTTGGACAGGTACTTCAAGGGTGAGGATTTCCCTGCTGAAAATTACATTGTCAAGGATGGGGAATTGGCACCTCAGTATCGCTAAATTATTTATGTATAGAGTTGTGTCTAGATTTCTGTGTTAAATAAACTGGCAAGCCGTGTCTTCAATAAGCTGATAAAATTGGCTACTTTATGTTCTTCTAGAACTCTAATGCAGTTTTTCTCCGGG</genome_strand>
        <mrna_strand>CAGCTGAGGTCACTGGAAGCAATACTGTCTCAGTTGCGGAAGATGAACTGATGCGAATCTTAATTCTTGTCCGAAATTTCTTACCTGGACATCATCAGGTTATCAATGGGGAGTGGAATGTTGCTGCAATTGCGCACAGAGCTTATGATTTGGAAGGCAAGACTGTTGGAACTGTTGGTGCAGGACGTATTGGCAGACTTTTACTCCAGCGATTGAAGCCATTTAACTGTAATCTACTTTACCATGACCGTCTTAAGATGGATTCTGAGCTAGAGAATCAAATTGGAGCAAAGTTTGAGGAAGATCTCGATAAGATGCTCTCGAAATGTGACATAGTGGTCATCAATACGCCTCTTACAGAGAAAACAAA.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGGAATGTTTGACAAGGAAAGAATTGCAAAGTTGAAGAAGGGAGTTCTAATTGTAAACAATGCTCGAGGAGCAATTATGGACACTCAAGCAGTTGTTGATGCTTGTAACAGCGGTCATATTGCAG...........................................................................................................................................................................................................................................GATACAGTGGAGATGTTTGGTACCCACAACCAGCTCCCAAGGACCATCTATGGCGTTACATGCCAAACCAAGCTATGACTCCTCACATTTCTGGGACTACCATTGATGCACAG...............................................................................................................TTGAGGTATGCAGCTGGAACAAAGGATATGTTGGACAGGTACTTCAAGGGTGAGGATTTCCCTGCTGAAAATTACATTGTCAAGGATGGGGAATTGGCACCTCAGTATCGCTAAATTATTTATGTATAGAGTTGTGTCTAGATTTCTGTGTTAAATAAACTGGCAAGCCGTGTCTTCAATAAGCTGATAAAATTGGCTACTTTATGTTCTTCTAGAACTCTAATGCAGTTTTTCTCCGGG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0236E02-u8qcS/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E555030" ref_strand="+" ref_description="SGN-E555030 [cTSC-6-D13]">
      <seq>agcagaggtcactggaagcaatactgtctcagttgcggaagatgaactgatgcgaatcttaattcttgtccgaaatttcttacctggacatcatcaggttatcaatggggagtggaatgttgctgcaattgcgcacagagcttatgatttggaaggcaagactgttggaactgttggtgcaggacgtattggcagacttttactccagcgattgaagccatttaactgtaatctactttaccatgaccgtcttaagatggattctgagctagagaatcaaattggagcaaagtttgaggaagatctcgataagatgctctcgaaatgtgacatagtggtcatcaatacgcctcttacagagaaaacaaaaggaatgtttgacaaggaaagaattgcaaagttgaagaagggagttctaattgtaaacaatgctcgaggagcaattatggacactcaagcagttgttgatgcttgtaacagcggtcatattgcaggatacagtggagatgtttggtacccacaaccagctcccaaggaccatctatggcgttacatgccaaaccaagctatgactcctcacatttctgggactaccattgatgcacagttgaggtatgcagctggaacaaaggatatgttggacaggtacttcaagggtgaggatttccctgctgaaaattacattgtcaaggatggggaattggcacctcagtatcgctaaattatttatgtatagagttgtgtctagatttctgtgttaaataaactggcaagccgtgtcttcaataagctgataaaattggctactttatgttcttctagaactctaatgcagtttttctccgggttagctgtaacttttgtgatggaaacatatgtcctcttctgtgaaggaggtctatgtatgatcctccaatgtctttcttgagtctataactgaacttccct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0236E02-u8qcS/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0236E02.1" temp_strand="+" temp_description="C02HBa0236E02.1  AC215430.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0236E02 sequenced_by:kribb upload_account_name:korea">
        <position start="67637" stop="70271"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="67937" g_stop="68305" g_length="369"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="369" r_length="369" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="68306" i_stop="69046" i_length="741">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.768" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="69047" g_stop="69171" g_length="125"/>
          <reference_exon_boundary r_type="cDNA" r_start="370" r_stop="494" r_length="125" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="69172" i_stop="69406" i_length="235">
            <donor d_prob="0.983" d_score="1.00"/>
            <acceptor a_prob="0.964" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="69407" g_stop="69519" g_length="113"/>
          <reference_exon_boundary r_type="cDNA" r_start="495" r_stop="607" r_length="113" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="69520" i_stop="69630" i_length="111">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.989" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="69631" g_stop="69971" g_length="341"/>
          <reference_exon_boundary r_type="cDNA" r_start="608" r_stop="948" r_length="341" r_score="0.991"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0236E02.1" gen_strand="+" ref_id="SGN-E555030" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>948</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0236E02.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E555030" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="67937" e_stop="68305"/>
          <exon e_start="69047" e_stop="69171"/>
          <exon e_start="69407" e_stop="69519"/>
          <exon e_start="69631" e_stop="69971"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGCAGAGGTCACTGGAAGCAATACTGTCTCAGTTGCGGAAGATGAACTGATGCGAATCTTAATTCTTGTCCGAAATTTCTTACCTGGACATCATCAGGTTATCAATGGGGAGTGGAATGTTGCTGCAATTGCGCACAGAGCTTATGATTTGGAAGGCAAGACTGTTGGAACTGTTGGTGCAGGACGTATTGGCAGACTTTTACTCCAGCGATTGAAGCCATTTAACTGTAATCTACTTTACCATGACCGTCTTAAGATGGATTCTGAGCTAGAGAATCAAATTGGAGCAAAGTTTGAGGAAGATCTCGATAAGATGCTCTCGAAATGTGACATAGTGGTCATCAATACGCCTCTTACAGAGAAAACAAAGTAAGGTTTCTGTTTCTGTAATTACCCGTCGTAAACCTATACAATAATATTTATTGACAAAGCTTCTTATATTCAAGTTATTTTAACAATGACTTAATTATGAAATGAACTAAGTAAGCTAAAGTGAATATTCATTGAGAATGAAATATGATATTTAGCGAAGGGAAGGAGAATCTTTGGTGTCATCGTAATTTTTTGGTATCACTCTAGATCATATATAAAGTAGTTGTATATTTAGATTCCCCGATTGTATTCCCTAAGTTAAGAAATTCTCTTGAGCATCCACCATATACTATGATACATGACTTTGGCTAAGCTCAAAAAGACTATCTCAATGATGGCCCTCCATGGATTCTCCACCTATATAAGCCACGGCTAAAGAAAAATTGCTTGGCCAAGTTGTCTTTTACCTTTGGCATGATGCAAAAAACATTTGATATTCTTTCTGTGTGAACCACTGCTACGAGTAATATGTTCTTAGAGATCATGTTTTCTTTTTGTTCTTCCTTTAATTTTCTATTTGAAGATTTGTCATCAGTTAGAGGTCATCGGTAGGATGATAGATGTTCTCAGCAACTTGTGTTGCCAGAATAATATGATTGCCAATGGAGTATTTTTAAGATTCTTGGAGATGTAAGAGTTGTTTCTGTCCATACATCACTCTTCTCATGTCACTAAGGTCATTGATTGTTTCCATGTGCTATATCGCAAATTGCTCACAATTTTAACTATGTGATCCAGAGGAATGTTTGACAAGGAAAGAATTGCAAAGTTGAAGAAGGGAGTTCTAATTGTAAACAATGCTCGAGGAGCAATTATGGACACTCAAGCAGTTGTTGATGCTTGTAACAGCGGTCATATTGCAGGTATTTTAACATAACTTGAACACATCATCCAGAGATGAGCCCTCAGCCTTAATATCAATTGAACACACCATTATATTTTTTTCTTCAATTCTTGCTTGTTTCTTTTCTTCAATATATTTTATCGACATTTGGAAGTAGTTCCATATCTTGTGGAATTGCCGAATCCTTTGAAGAAAGAAGTACTTCTAAAACTATATTGAGTTCTTTTCTTTCGGTTATTTCCCCCCAAATTTAGGATACAGTGGAGATGTTTGGTACCCACAACCAGCTCCCAAGGACCATCTATGGCGTTACATGCCAAACCAAGCTATGACTCCTCACATTTCTGGGACTACCATTGATGCACAGGTTTGTAAATACTCTGTTTCTCTAATTTCTTTAGGCTTTGCTTTTTCTTTACTTTCACGACATTATAATTGCGATTAAACTGAGAGAAGCTTGTTACTTTCAATTTCGCAGTTGAGGTATGCAGCTGGAACAAAGGATATGTTGGACAGGTACTTCAAGGGTGAGGATTTCCCTGCTGAAAATTACATTGTCAAGGATGGGGAATTGGCACCTCAGTATCGCTAAATTATTTATGTATAGAGTTGTGTCTAGATTTCTGTGTTAAATAAACTGGCAAGCCGTGTCTTCAATAAGCTGATAAAATTGGCTACTTTATGTTCTTCTAGAACTCTAATGCAGTTTTTCTCCGGGTTAGCTGTAACTTTTGTGATGGAAACATATGTCCTCTTCTGTGATGGAGGTCTATGTATGATCCTCCAGTGTCTTTCTTGAGTCTATAACTGAACTTCCTT</genome_strand>
        <mrna_strand>AGCAGAGGTCACTGGAAGCAATACTGTCTCAGTTGCGGAAGATGAACTGATGCGAATCTTAATTCTTGTCCGAAATTTCTTACCTGGACATCATCAGGTTATCAATGGGGAGTGGAATGTTGCTGCAATTGCGCACAGAGCTTATGATTTGGAAGGCAAGACTGTTGGAACTGTTGGTGCAGGACGTATTGGCAGACTTTTACTCCAGCGATTGAAGCCATTTAACTGTAATCTACTTTACCATGACCGTCTTAAGATGGATTCTGAGCTAGAGAATCAAATTGGAGCAAAGTTTGAGGAAGATCTCGATAAGATGCTCTCGAAATGTGACATAGTGGTCATCAATACGCCTCTTACAGAGAAAACAAA.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGGAATGTTTGACAAGGAAAGAATTGCAAAGTTGAAGAAGGGAGTTCTAATTGTAAACAATGCTCGAGGAGCAATTATGGACACTCAAGCAGTTGTTGATGCTTGTAACAGCGGTCATATTGCAG...........................................................................................................................................................................................................................................GATACAGTGGAGATGTTTGGTACCCACAACCAGCTCCCAAGGACCATCTATGGCGTTACATGCCAAACCAAGCTATGACTCCTCACATTTCTGGGACTACCATTGATGCACAG...............................................................................................................TTGAGGTATGCAGCTGGAACAAAGGATATGTTGGACAGGTACTTCAAGGGTGAGGATTTCCCTGCTGAAAATTACATTGTCAAGGATGGGGAATTGGCACCTCAGTATCGCTAAATTATTTATGTATAGAGTTGTGTCTAGATTTCTGTGTTAAATAAACTGGCAAGCCGTGTCTTCAATAAGCTGATAAAATTGGCTACTTTATGTTCTTCTAGAACTCTAATGCAGTTTTTCTCCGGGTTAGCTGTAACTTTTGTGATGGAAACATATGTCCTCTTCTGTGAAGGAGGTCTATGTATGATCCTCCAATGTCTTTCTTGAGTCTATAACTGAACTTCCCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0236E02-u8qcS/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E552235" ref_strand="+" ref_description="SGN-E552235 [cTSB-3-E19]">
      <seq>agcagaggtcactggaagcaatactgtctcagttgcggaagatgaactgatgcgaatcttaattcttgtccgaaatttcttacctggacatcatcaggttatcaatggggagtggaatgttgctgcaattgcgcacagagcttatgatttggaaggcaagactgttggaactgttggtgcaggacgtattggcagacttttactccagcgattgaagccatttaactgtaatctactttaccatgaccgtcttaagatggattctgagctagagaatcaaattggagcaaagtttgaggaagatctcgataagatgctctcgaaatgtgacatagtggtcatcaatacgcctcttacagagaaaacaaaaggaatgtttgacaaggaaagaattgcaaagttgaagaagggagttctaattgtaaacaatgctcgaggagcaattatggacactcaagcagttgttgatgcttgtaacagcggtcatattgcaggatacagtggagatgtttggtacccacaaccagctcccaaggaccatctatggcgttacatgccaaaccaagctatgactcctcacatttctgggactaccattgatgcacagttgaggtatgcagctggaacaaaggatatgttggacaggtacttcaagggtgaggatttccctgctgaaaattacattgtcaaggatggggaattggcacctcagtatcgctaaattatttatgtatagagttgtgtctagatttctgtgttaaataaactggcaagccgtgtcttcaataagctgataaaattggctactttatgttcttctagaactctaatgcattttttctccgggttaactgtaacttttgggatggaaacatatgtcctctt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0236E02-u8qcS/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0236E02.1" temp_strand="+" temp_description="C02HBa0236E02.1  AC215430.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0236E02 sequenced_by:kribb upload_account_name:korea">
        <position start="67637" stop="70208"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="67937" g_stop="68305" g_length="369"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="369" r_length="369" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="68306" i_stop="69046" i_length="741">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.768" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="69047" g_stop="69171" g_length="125"/>
          <reference_exon_boundary r_type="cDNA" r_start="370" r_stop="494" r_length="125" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="69172" i_stop="69406" i_length="235">
            <donor d_prob="0.983" d_score="1.00"/>
            <acceptor a_prob="0.964" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="69407" g_stop="69519" g_length="113"/>
          <reference_exon_boundary r_type="cDNA" r_start="495" r_stop="607" r_length="113" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="69520" i_stop="69630" i_length="111">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.989" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="69631" g_stop="69908" g_length="278"/>
          <reference_exon_boundary r_type="cDNA" r_start="608" r_stop="885" r_length="278" r_score="0.989"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0236E02.1" gen_strand="+" ref_id="SGN-E552235" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>885</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0236E02.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E552235" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="67937" e_stop="68305"/>
          <exon e_start="69047" e_stop="69171"/>
          <exon e_start="69407" e_stop="69519"/>
          <exon e_start="69631" e_stop="69908"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGCAGAGGTCACTGGAAGCAATACTGTCTCAGTTGCGGAAGATGAACTGATGCGAATCTTAATTCTTGTCCGAAATTTCTTACCTGGACATCATCAGGTTATCAATGGGGAGTGGAATGTTGCTGCAATTGCGCACAGAGCTTATGATTTGGAAGGCAAGACTGTTGGAACTGTTGGTGCAGGACGTATTGGCAGACTTTTACTCCAGCGATTGAAGCCATTTAACTGTAATCTACTTTACCATGACCGTCTTAAGATGGATTCTGAGCTAGAGAATCAAATTGGAGCAAAGTTTGAGGAAGATCTCGATAAGATGCTCTCGAAATGTGACATAGTGGTCATCAATACGCCTCTTACAGAGAAAACAAAGTAAGGTTTCTGTTTCTGTAATTACCCGTCGTAAACCTATACAATAATATTTATTGACAAAGCTTCTTATATTCAAGTTATTTTAACAATGACTTAATTATGAAATGAACTAAGTAAGCTAAAGTGAATATTCATTGAGAATGAAATATGATATTTAGCGAAGGGAAGGAGAATCTTTGGTGTCATCGTAATTTTTTGGTATCACTCTAGATCATATATAAAGTAGTTGTATATTTAGATTCCCCGATTGTATTCCCTAAGTTAAGAAATTCTCTTGAGCATCCACCATATACTATGATACATGACTTTGGCTAAGCTCAAAAAGACTATCTCAATGATGGCCCTCCATGGATTCTCCACCTATATAAGCCACGGCTAAAGAAAAATTGCTTGGCCAAGTTGTCTTTTACCTTTGGCATGATGCAAAAAACATTTGATATTCTTTCTGTGTGAACCACTGCTACGAGTAATATGTTCTTAGAGATCATGTTTTCTTTTTGTTCTTCCTTTAATTTTCTATTTGAAGATTTGTCATCAGTTAGAGGTCATCGGTAGGATGATAGATGTTCTCAGCAACTTGTGTTGCCAGAATAATATGATTGCCAATGGAGTATTTTTAAGATTCTTGGAGATGTAAGAGTTGTTTCTGTCCATACATCACTCTTCTCATGTCACTAAGGTCATTGATTGTTTCCATGTGCTATATCGCAAATTGCTCACAATTTTAACTATGTGATCCAGAGGAATGTTTGACAAGGAAAGAATTGCAAAGTTGAAGAAGGGAGTTCTAATTGTAAACAATGCTCGAGGAGCAATTATGGACACTCAAGCAGTTGTTGATGCTTGTAACAGCGGTCATATTGCAGGTATTTTAACATAACTTGAACACATCATCCAGAGATGAGCCCTCAGCCTTAATATCAATTGAACACACCATTATATTTTTTTCTTCAATTCTTGCTTGTTTCTTTTCTTCAATATATTTTATCGACATTTGGAAGTAGTTCCATATCTTGTGGAATTGCCGAATCCTTTGAAGAAAGAAGTACTTCTAAAACTATATTGAGTTCTTTTCTTTCGGTTATTTCCCCCCAAATTTAGGATACAGTGGAGATGTTTGGTACCCACAACCAGCTCCCAAGGACCATCTATGGCGTTACATGCCAAACCAAGCTATGACTCCTCACATTTCTGGGACTACCATTGATGCACAGGTTTGTAAATACTCTGTTTCTCTAATTTCTTTAGGCTTTGCTTTTTCTTTACTTTCACGACATTATAATTGCGATTAAACTGAGAGAAGCTTGTTACTTTCAATTTCGCAGTTGAGGTATGCAGCTGGAACAAAGGATATGTTGGACAGGTACTTCAAGGGTGAGGATTTCCCTGCTGAAAATTACATTGTCAAGGATGGGGAATTGGCACCTCAGTATCGCTAAATTATTTATGTATAGAGTTGTGTCTAGATTTCTGTGTTAAATAAACTGGCAAGCCGTGTCTTCAATAAGCTGATAAAATTGGCTACTTTATGTTCTTCTAGAACTCTAATGCAGTTTTTCTCCGGGTTAGCTGTAACTTTTGTGATGGAAACATATGTCCTCTT</genome_strand>
        <mrna_strand>AGCAGAGGTCACTGGAAGCAATACTGTCTCAGTTGCGGAAGATGAACTGATGCGAATCTTAATTCTTGTCCGAAATTTCTTACCTGGACATCATCAGGTTATCAATGGGGAGTGGAATGTTGCTGCAATTGCGCACAGAGCTTATGATTTGGAAGGCAAGACTGTTGGAACTGTTGGTGCAGGACGTATTGGCAGACTTTTACTCCAGCGATTGAAGCCATTTAACTGTAATCTACTTTACCATGACCGTCTTAAGATGGATTCTGAGCTAGAGAATCAAATTGGAGCAAAGTTTGAGGAAGATCTCGATAAGATGCTCTCGAAATGTGACATAGTGGTCATCAATACGCCTCTTACAGAGAAAACAAA.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGGAATGTTTGACAAGGAAAGAATTGCAAAGTTGAAGAAGGGAGTTCTAATTGTAAACAATGCTCGAGGAGCAATTATGGACACTCAAGCAGTTGTTGATGCTTGTAACAGCGGTCATATTGCAG...........................................................................................................................................................................................................................................GATACAGTGGAGATGTTTGGTACCCACAACCAGCTCCCAAGGACCATCTATGGCGTTACATGCCAAACCAAGCTATGACTCCTCACATTTCTGGGACTACCATTGATGCACAG...............................................................................................................TTGAGGTATGCAGCTGGAACAAAGGATATGTTGGACAGGTACTTCAAGGGTGAGGATTTCCCTGCTGAAAATTACATTGTCAAGGATGGGGAATTGGCACCTCAGTATCGCTAAATTATTTATGTATAGAGTTGTGTCTAGATTTCTGTGTTAAATAAACTGGCAAGCCGTGTCTTCAATAAGCTGATAAAATTGGCTACTTTATGTTCTTCTAGAACTCTAATGCATTTTTTCTCCGGGTTAACTGTAACTTTTGGGATGGAAACATATGTCCTCTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0236E02-u8qcS/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E553296" ref_strand="+" ref_description="SGN-E553296 [cTSB-4-E19]">
      <seq>aaaaaaagtcactggaaagcaatactgtctcaattgcaaaaaatgaactgatgcaaatcttaattcttgtgcgaaatttcttacctggacatcatcaggttatcaatggaggagtggaatgttgctgcaattgcacacagagcttatgatttggaaggcaagactgttggaactgttggtgcaggacgtattggcagacttttactccagcgattgaagccatttaactgtaatctactttaccatgaccgtcttaagatggattctgagctagagaatcaaattggagcaaagtttgaggaagatctcgataagatgctctcgaaatgtgacatagtggtcatcaatacgcctcttacagagaaaacaaaaggaatgtttgacaaggaaagaattgcaaagttgaagaagggagttctaattgtaaacaatgctcgaggagcaattatggacactcaagcagttgttgatgcttgtaacagcggtcatattgcaggatacagtggagatgtttggtacccacaaccagctcccaaggaccatctatggcgttacatgccaaaccaagctatgactcctcacatttctgggactaccattgatgcacagttgaggtatgcagctggaacaaaggatatgttggacaggtacttcaagggtgaggatttccctgctgaaaattacattgtcaaggatggggaattggcacctcagtatcgctaaattatttatgt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0236E02-u8qcS/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0236E02.1" temp_strand="+" temp_description="C02HBa0236E02.1  AC215430.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0236E02 sequenced_by:kribb upload_account_name:korea">
        <position start="67640" stop="70055"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="67937" g_stop="68305" g_length="369"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="371" r_length="371" r_score="0.959"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="68306" i_stop="69046" i_length="741">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.768" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="69047" g_stop="69171" g_length="125"/>
          <reference_exon_boundary r_type="cDNA" r_start="372" r_stop="496" r_length="125" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="69172" i_stop="69406" i_length="235">
            <donor d_prob="0.983" d_score="1.00"/>
            <acceptor a_prob="0.964" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="69407" g_stop="69519" g_length="113"/>
          <reference_exon_boundary r_type="cDNA" r_start="497" r_stop="609" r_length="113" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="69520" i_stop="69630" i_length="111">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.989" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="69631" g_stop="69755" g_length="125"/>
          <reference_exon_boundary r_type="cDNA" r_start="610" r_stop="734" r_length="125" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0236E02.1" gen_strand="+" ref_id="SGN-E553296" ref_strand="+">
        <total_alignment_score>0.980</total_alignment_score>
        <cumulative_length_of_scored_exons>732</cumulative_length_of_scored_exons>
        <coverage percentage="0.997" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0236E02.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E553296" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="67937" e_stop="68305"/>
          <exon e_start="69047" e_stop="69171"/>
          <exon e_start="69407" e_stop="69519"/>
          <exon e_start="69631" e_stop="69755"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGCAGAGGTCACTGGA-AGCAATACTGTCTCAGTTGCGGAAGATGAACTGATGCGAATCTTAATTCTTGTCCGAAATTTCTTACCTGGACATCATCAGGTTATCAATGG-GGAGTGGAATGTTGCTGCAATTGCGCACAGAGCTTATGATTTGGAAGGCAAGACTGTTGGAACTGTTGGTGCAGGACGTATTGGCAGACTTTTACTCCAGCGATTGAAGCCATTTAACTGTAATCTACTTTACCATGACCGTCTTAAGATGGATTCTGAGCTAGAGAATCAAATTGGAGCAAAGTTTGAGGAAGATCTCGATAAGATGCTCTCGAAATGTGACATAGTGGTCATCAATACGCCTCTTACAGAGAAAACAAAGTAAGGTTTCTGTTTCTGTAATTACCCGTCGTAAACCTATACAATAATATTTATTGACAAAGCTTCTTATATTCAAGTTATTTTAACAATGACTTAATTATGAAATGAACTAAGTAAGCTAAAGTGAATATTCATTGAGAATGAAATATGATATTTAGCGAAGGGAAGGAGAATCTTTGGTGTCATCGTAATTTTTTGGTATCACTCTAGATCATATATAAAGTAGTTGTATATTTAGATTCCCCGATTGTATTCCCTAAGTTAAGAAATTCTCTTGAGCATCCACCATATACTATGATACATGACTTTGGCTAAGCTCAAAAAGACTATCTCAATGATGGCCCTCCATGGATTCTCCACCTATATAAGCCACGGCTAAAGAAAAATTGCTTGGCCAAGTTGTCTTTTACCTTTGGCATGATGCAAAAAACATTTGATATTCTTTCTGTGTGAACCACTGCTACGAGTAATATGTTCTTAGAGATCATGTTTTCTTTTTGTTCTTCCTTTAATTTTCTATTTGAAGATTTGTCATCAGTTAGAGGTCATCGGTAGGATGATAGATGTTCTCAGCAACTTGTGTTGCCAGAATAATATGATTGCCAATGGAGTATTTTTAAGATTCTTGGAGATGTAAGAGTTGTTTCTGTCCATACATCACTCTTCTCATGTCACTAAGGTCATTGATTGTTTCCATGTGCTATATCGCAAATTGCTCACAATTTTAACTATGTGATCCAGAGGAATGTTTGACAAGGAAAGAATTGCAAAGTTGAAGAAGGGAGTTCTAATTGTAAACAATGCTCGAGGAGCAATTATGGACACTCAAGCAGTTGTTGATGCTTGTAACAGCGGTCATATTGCAGGTATTTTAACATAACTTGAACACATCATCCAGAGATGAGCCCTCAGCCTTAATATCAATTGAACACACCATTATATTTTTTTCTTCAATTCTTGCTTGTTTCTTTTCTTCAATATATTTTATCGACATTTGGAAGTAGTTCCATATCTTGTGGAATTGCCGAATCCTTTGAAGAAAGAAGTACTTCTAAAACTATATTGAGTTCTTTTCTTTCGGTTATTTCCCCCCAAATTTAGGATACAGTGGAGATGTTTGGTACCCACAACCAGCTCCCAAGGACCATCTATGGCGTTACATGCCAAACCAAGCTATGACTCCTCACATTTCTGGGACTACCATTGATGCACAGGTTTGTAAATACTCTGTTTCTCTAATTTCTTTAGGCTTTGCTTTTTCTTTACTTTCACGACATTATAATTGCGATTAAACTGAGAGAAGCTTGTTACTTTCAATTTCGCAGTTGAGGTATGCAGCTGGAACAAAGGATATGTTGGACAGGTACTTCAAGGGTGAGGATTTCCCTGCTGAAAATTACATTGTCAAGGATGGGGAATTGGCACCTCAGTATCGCTAAATTATTTATGT</genome_strand>
        <mrna_strand>AAAAAAAGTCACTGGAAAGCAATACTGTCTCAATTGCAAAAAATGAACTGATGCAAATCTTAATTCTTGTGCGAAATTTCTTACCTGGACATCATCAGGTTATCAATGGAGGAGTGGAATGTTGCTGCAATTGCACACAGAGCTTATGATTTGGAAGGCAAGACTGTTGGAACTGTTGGTGCAGGACGTATTGGCAGACTTTTACTCCAGCGATTGAAGCCATTTAACTGTAATCTACTTTACCATGACCGTCTTAAGATGGATTCTGAGCTAGAGAATCAAATTGGAGCAAAGTTTGAGGAAGATCTCGATAAGATGCTCTCGAAATGTGACATAGTGGTCATCAATACGCCTCTTACAGAGAAAACAAA.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGGAATGTTTGACAAGGAAAGAATTGCAAAGTTGAAGAAGGGAGTTCTAATTGTAAACAATGCTCGAGGAGCAATTATGGACACTCAAGCAGTTGTTGATGCTTGTAACAGCGGTCATATTGCAG...........................................................................................................................................................................................................................................GATACAGTGGAGATGTTTGGTACCCACAACCAGCTCCCAAGGACCATCTATGGCGTTACATGCCAAACCAAGCTATGACTCCTCACATTTCTGGGACTACCATTGATGCACAG...............................................................................................................TTGAGGTATGCAGCTGGAACAAAGGATATGTTGGACAGGTACTTCAAGGGTGAGGATTTCCCTGCTGAAAATTACATTGTCAAGGATGGGGAATTGGCACCTCAGTATCGCTAAATTATTTATGT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0236E02-u8qcS/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E233270" ref_strand="+" ref_description="SGN-E233270 [cLED-6-J13]">
      <seq>tgaactgatgcgaatcttaattcttgtccgaaatttcttacctggacatcatcaggttatcaatggggagtggaatgttgctgcaattgcgcacagagcttatgatttggaaggcaagactgttggaactgttggtgcaggacgtattggcagacttttactccagcgattgaagccatttaactgtaatctactttaccatgaccgtcttaagatggattctgagctagagaatcaaattggagcaaagtttgaggaagatctcgataagatgctctcgaaatgtgacatagtggtcatcaatacgcctcttacagagaaaacaaaaggaatgtttgacaaggaaagaattgcaaagttgaagaagggagttctaattgtaaacaatgctcgaggagcaattatggacactcaagcagttgttgatgcttgtaacagcggtcatattgcaggatacagtggagatgtttggtacccacaaccagctcccaaggaccatctatggcgttacatgccaaaccaagctatgactcctcacatttctgggactaccattgatgcacagttgaggtatgcagctggaacaaaggatatgttggacaggtacttc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0236E02-u8qcS/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0236E02.1" temp_strand="+" temp_description="C02HBa0236E02.1  AC215430.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0236E02 sequenced_by:kribb upload_account_name:korea">
        <position start="67679" stop="69975"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="67979" g_stop="68305" g_length="327"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="327" r_length="327" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="68306" i_stop="69046" i_length="741">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.768" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="69047" g_stop="69171" g_length="125"/>
          <reference_exon_boundary r_type="cDNA" r_start="328" r_stop="452" r_length="125" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="69172" i_stop="69406" i_length="235">
            <donor d_prob="0.983" d_score="1.00"/>
            <acceptor a_prob="0.964" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="69407" g_stop="69519" g_length="113"/>
          <reference_exon_boundary r_type="cDNA" r_start="453" r_stop="565" r_length="113" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="69520" i_stop="69630" i_length="111">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.989" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="69631" g_stop="69675" g_length="45"/>
          <reference_exon_boundary r_type="cDNA" r_start="566" r_stop="610" r_length="45" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0236E02.1" gen_strand="+" ref_id="SGN-E233270" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>610</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0236E02.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E233270" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="67979" e_stop="68305"/>
          <exon e_start="69047" e_stop="69171"/>
          <exon e_start="69407" e_stop="69519"/>
          <exon e_start="69631" e_stop="69675"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGAACTGATGCGAATCTTAATTCTTGTCCGAAATTTCTTACCTGGACATCATCAGGTTATCAATGGGGAGTGGAATGTTGCTGCAATTGCGCACAGAGCTTATGATTTGGAAGGCAAGACTGTTGGAACTGTTGGTGCAGGACGTATTGGCAGACTTTTACTCCAGCGATTGAAGCCATTTAACTGTAATCTACTTTACCATGACCGTCTTAAGATGGATTCTGAGCTAGAGAATCAAATTGGAGCAAAGTTTGAGGAAGATCTCGATAAGATGCTCTCGAAATGTGACATAGTGGTCATCAATACGCCTCTTACAGAGAAAACAAAGTAAGGTTTCTGTTTCTGTAATTACCCGTCGTAAACCTATACAATAATATTTATTGACAAAGCTTCTTATATTCAAGTTATTTTAACAATGACTTAATTATGAAATGAACTAAGTAAGCTAAAGTGAATATTCATTGAGAATGAAATATGATATTTAGCGAAGGGAAGGAGAATCTTTGGTGTCATCGTAATTTTTTGGTATCACTCTAGATCATATATAAAGTAGTTGTATATTTAGATTCCCCGATTGTATTCCCTAAGTTAAGAAATTCTCTTGAGCATCCACCATATACTATGATACATGACTTTGGCTAAGCTCAAAAAGACTATCTCAATGATGGCCCTCCATGGATTCTCCACCTATATAAGCCACGGCTAAAGAAAAATTGCTTGGCCAAGTTGTCTTTTACCTTTGGCATGATGCAAAAAACATTTGATATTCTTTCTGTGTGAACCACTGCTACGAGTAATATGTTCTTAGAGATCATGTTTTCTTTTTGTTCTTCCTTTAATTTTCTATTTGAAGATTTGTCATCAGTTAGAGGTCATCGGTAGGATGATAGATGTTCTCAGCAACTTGTGTTGCCAGAATAATATGATTGCCAATGGAGTATTTTTAAGATTCTTGGAGATGTAAGAGTTGTTTCTGTCCATACATCACTCTTCTCATGTCACTAAGGTCATTGATTGTTTCCATGTGCTATATCGCAAATTGCTCACAATTTTAACTATGTGATCCAGAGGAATGTTTGACAAGGAAAGAATTGCAAAGTTGAAGAAGGGAGTTCTAATTGTAAACAATGCTCGAGGAGCAATTATGGACACTCAAGCAGTTGTTGATGCTTGTAACAGCGGTCATATTGCAGGTATTTTAACATAACTTGAACACATCATCCAGAGATGAGCCCTCAGCCTTAATATCAATTGAACACACCATTATATTTTTTTCTTCAATTCTTGCTTGTTTCTTTTCTTCAATATATTTTATCGACATTTGGAAGTAGTTCCATATCTTGTGGAATTGCCGAATCCTTTGAAGAAAGAAGTACTTCTAAAACTATATTGAGTTCTTTTCTTTCGGTTATTTCCCCCCAAATTTAGGATACAGTGGAGATGTTTGGTACCCACAACCAGCTCCCAAGGACCATCTATGGCGTTACATGCCAAACCAAGCTATGACTCCTCACATTTCTGGGACTACCATTGATGCACAGGTTTGTAAATACTCTGTTTCTCTAATTTCTTTAGGCTTTGCTTTTTCTTTACTTTCACGACATTATAATTGCGATTAAACTGAGAGAAGCTTGTTACTTTCAATTTCGCAGTTGAGGTATGCAGCTGGAACAAAGGATATGTTGGACAGGTACTTC</genome_strand>
        <mrna_strand>TGAACTGATGCGAATCTTAATTCTTGTCCGAAATTTCTTACCTGGACATCATCAGGTTATCAATGGGGAGTGGAATGTTGCTGCAATTGCGCACAGAGCTTATGATTTGGAAGGCAAGACTGTTGGAACTGTTGGTGCAGGACGTATTGGCAGACTTTTACTCCAGCGATTGAAGCCATTTAACTGTAATCTACTTTACCATGACCGTCTTAAGATGGATTCTGAGCTAGAGAATCAAATTGGAGCAAAGTTTGAGGAAGATCTCGATAAGATGCTCTCGAAATGTGACATAGTGGTCATCAATACGCCTCTTACAGAGAAAACAAA.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGGAATGTTTGACAAGGAAAGAATTGCAAAGTTGAAGAAGGGAGTTCTAATTGTAAACAATGCTCGAGGAGCAATTATGGACACTCAAGCAGTTGTTGATGCTTGTAACAGCGGTCATATTGCAG...........................................................................................................................................................................................................................................GATACAGTGGAGATGTTTGGTACCCACAACCAGCTCCCAAGGACCATCTATGGCGTTACATGCCAAACCAAGCTATGACTCCTCACATTTCTGGGACTACCATTGATGCACAG...............................................................................................................TTGAGGTATGCAGCTGGAACAAAGGATATGTTGGACAGGTACTTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0236E02-u8qcS/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E235775" ref_strand="+" ref_description="SGN-E235775 [cLED-15-M17]">
      <seq>tgaactgatgcgaatcttaattcttgtccgaaatttcttacctggacatcatcaggttatcaatggggagtggaatgttgctgcaattgcgcacagagcttatgatttggaaggcaagactgttggaactgttggtgcaggacgtattggcagacttttactccagcgattgaagccatttaactgtaatctactttaccatgaccgtcttaagatggattctgagctagagaatcaaattggagcaaagtttgaggaagatctcgataagatgctctcgaaatgtgacatagtggtcatcaatacgcctcttacagagaaaacaaaaggaatgtttgacaaggaaagaattgcaaagttgaagaagggagttctaattgtaaacaatgctcgaggagcaattatggacactcaagcagttgttgatgcttgtaacagcggtcatattgcaggatacagtggagatgtttggtacccacaaccagctcccaaggaccatctatggcgttacatgccaaaccaagctatgac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0236E02-u8qcS/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0236E02.1" temp_strand="+" temp_description="C02HBa0236E02.1  AC215430.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0236E02 sequenced_by:kribb upload_account_name:korea">
        <position start="67679" stop="69785"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="67979" g_stop="68305" g_length="327"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="327" r_length="327" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="68306" i_stop="69046" i_length="741">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.768" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="69047" g_stop="69171" g_length="125"/>
          <reference_exon_boundary r_type="cDNA" r_start="328" r_stop="452" r_length="125" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="69172" i_stop="69406" i_length="235">
            <donor d_prob="0.983" d_score="1.00"/>
            <acceptor a_prob="0.964" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="69407" g_stop="69485" g_length="79"/>
          <reference_exon_boundary r_type="cDNA" r_start="453" r_stop="531" r_length="79" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0236E02.1" gen_strand="+" ref_id="SGN-E235775" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>531</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0236E02.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E235775" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="67979" e_stop="68305"/>
          <exon e_start="69047" e_stop="69171"/>
          <exon e_start="69407" e_stop="69485"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGAACTGATGCGAATCTTAATTCTTGTCCGAAATTTCTTACCTGGACATCATCAGGTTATCAATGGGGAGTGGAATGTTGCTGCAATTGCGCACAGAGCTTATGATTTGGAAGGCAAGACTGTTGGAACTGTTGGTGCAGGACGTATTGGCAGACTTTTACTCCAGCGATTGAAGCCATTTAACTGTAATCTACTTTACCATGACCGTCTTAAGATGGATTCTGAGCTAGAGAATCAAATTGGAGCAAAGTTTGAGGAAGATCTCGATAAGATGCTCTCGAAATGTGACATAGTGGTCATCAATACGCCTCTTACAGAGAAAACAAAGTAAGGTTTCTGTTTCTGTAATTACCCGTCGTAAACCTATACAATAATATTTATTGACAAAGCTTCTTATATTCAAGTTATTTTAACAATGACTTAATTATGAAATGAACTAAGTAAGCTAAAGTGAATATTCATTGAGAATGAAATATGATATTTAGCGAAGGGAAGGAGAATCTTTGGTGTCATCGTAATTTTTTGGTATCACTCTAGATCATATATAAAGTAGTTGTATATTTAGATTCCCCGATTGTATTCCCTAAGTTAAGAAATTCTCTTGAGCATCCACCATATACTATGATACATGACTTTGGCTAAGCTCAAAAAGACTATCTCAATGATGGCCCTCCATGGATTCTCCACCTATATAAGCCACGGCTAAAGAAAAATTGCTTGGCCAAGTTGTCTTTTACCTTTGGCATGATGCAAAAAACATTTGATATTCTTTCTGTGTGAACCACTGCTACGAGTAATATGTTCTTAGAGATCATGTTTTCTTTTTGTTCTTCCTTTAATTTTCTATTTGAAGATTTGTCATCAGTTAGAGGTCATCGGTAGGATGATAGATGTTCTCAGCAACTTGTGTTGCCAGAATAATATGATTGCCAATGGAGTATTTTTAAGATTCTTGGAGATGTAAGAGTTGTTTCTGTCCATACATCACTCTTCTCATGTCACTAAGGTCATTGATTGTTTCCATGTGCTATATCGCAAATTGCTCACAATTTTAACTATGTGATCCAGAGGAATGTTTGACAAGGAAAGAATTGCAAAGTTGAAGAAGGGAGTTCTAATTGTAAACAATGCTCGAGGAGCAATTATGGACACTCAAGCAGTTGTTGATGCTTGTAACAGCGGTCATATTGCAGGTATTTTAACATAACTTGAACACATCATCCAGAGATGAGCCCTCAGCCTTAATATCAATTGAACACACCATTATATTTTTTTCTTCAATTCTTGCTTGTTTCTTTTCTTCAATATATTTTATCGACATTTGGAAGTAGTTCCATATCTTGTGGAATTGCCGAATCCTTTGAAGAAAGAAGTACTTCTAAAACTATATTGAGTTCTTTTCTTTCGGTTATTTCCCCCCAAATTTAGGATACAGTGGAGATGTTTGGTACCCACAACCAGCTCCCAAGGACCATCTATGGCGTTACATGCCAAACCAAGCTATGAC</genome_strand>
        <mrna_strand>TGAACTGATGCGAATCTTAATTCTTGTCCGAAATTTCTTACCTGGACATCATCAGGTTATCAATGGGGAGTGGAATGTTGCTGCAATTGCGCACAGAGCTTATGATTTGGAAGGCAAGACTGTTGGAACTGTTGGTGCAGGACGTATTGGCAGACTTTTACTCCAGCGATTGAAGCCATTTAACTGTAATCTACTTTACCATGACCGTCTTAAGATGGATTCTGAGCTAGAGAATCAAATTGGAGCAAAGTTTGAGGAAGATCTCGATAAGATGCTCTCGAAATGTGACATAGTGGTCATCAATACGCCTCTTACAGAGAAAACAAA.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGGAATGTTTGACAAGGAAAGAATTGCAAAGTTGAAGAAGGGAGTTCTAATTGTAAACAATGCTCGAGGAGCAATTATGGACACTCAAGCAGTTGTTGATGCTTGTAACAGCGGTCATATTGCAG...........................................................................................................................................................................................................................................GATACAGTGGAGATGTTTGGTACCCACAACCAGCTCCCAAGGACCATCTATGGCGTTACATGCCAAACCAAGCTATGAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0236E02-u8qcS/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E240658" ref_strand="+" ref_description="SGN-E240658 [cLED-21-E21]">
      <seq>tgaactgatgcgaatcttaattcttgtccgaaatttcttacctggacatcatcaggttatcaatggggagtggaatgttgctgcaattgcgcacagagcttatgatttggaaggcaagactgttggaactgttggtgcaggacgtattggcagacttttactccagcgattgaagccatttaactgtaatctactttaccatgaccgtcttaagatggattctgagctagagaatcaaattggagcaaagtttgaggaagatctcgataagatgctctcgaaatgtgacatagtggtcatcaatacgcctcttacagagaaaacaaaaggaatgtttgacaaggaaagaattgcaaagttgaagaagggagttctaattgtaaacaatgctcgaggagcaattatggacactcaagcagttgttgatgcttgtaacagcggtcatattgcaggatacagtggagatgtttggtaccca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0236E02-u8qcS/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0236E02.1" temp_strand="+" temp_description="C02HBa0236E02.1  AC215430.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0236E02 sequenced_by:kribb upload_account_name:korea">
        <position start="67679" stop="69732"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="67979" g_stop="68305" g_length="327"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="327" r_length="327" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="68306" i_stop="69046" i_length="741">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.768" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="69047" g_stop="69171" g_length="125"/>
          <reference_exon_boundary r_type="cDNA" r_start="328" r_stop="452" r_length="125" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="69172" i_stop="69406" i_length="235">
            <donor d_prob="0.983" d_score="1.00"/>
            <acceptor a_prob="0.964" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="69407" g_stop="69432" g_length="26"/>
          <reference_exon_boundary r_type="cDNA" r_start="453" r_stop="478" r_length="26" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0236E02.1" gen_strand="+" ref_id="SGN-E240658" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>478</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0236E02.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E240658" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="67979" e_stop="68305"/>
          <exon e_start="69047" e_stop="69171"/>
          <exon e_start="69407" e_stop="69432"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGAACTGATGCGAATCTTAATTCTTGTCCGAAATTTCTTACCTGGACATCATCAGGTTATCAATGGGGAGTGGAATGTTGCTGCAATTGCGCACAGAGCTTATGATTTGGAAGGCAAGACTGTTGGAACTGTTGGTGCAGGACGTATTGGCAGACTTTTACTCCAGCGATTGAAGCCATTTAACTGTAATCTACTTTACCATGACCGTCTTAAGATGGATTCTGAGCTAGAGAATCAAATTGGAGCAAAGTTTGAGGAAGATCTCGATAAGATGCTCTCGAAATGTGACATAGTGGTCATCAATACGCCTCTTACAGAGAAAACAAAGTAAGGTTTCTGTTTCTGTAATTACCCGTCGTAAACCTATACAATAATATTTATTGACAAAGCTTCTTATATTCAAGTTATTTTAACAATGACTTAATTATGAAATGAACTAAGTAAGCTAAAGTGAATATTCATTGAGAATGAAATATGATATTTAGCGAAGGGAAGGAGAATCTTTGGTGTCATCGTAATTTTTTGGTATCACTCTAGATCATATATAAAGTAGTTGTATATTTAGATTCCCCGATTGTATTCCCTAAGTTAAGAAATTCTCTTGAGCATCCACCATATACTATGATACATGACTTTGGCTAAGCTCAAAAAGACTATCTCAATGATGGCCCTCCATGGATTCTCCACCTATATAAGCCACGGCTAAAGAAAAATTGCTTGGCCAAGTTGTCTTTTACCTTTGGCATGATGCAAAAAACATTTGATATTCTTTCTGTGTGAACCACTGCTACGAGTAATATGTTCTTAGAGATCATGTTTTCTTTTTGTTCTTCCTTTAATTTTCTATTTGAAGATTTGTCATCAGTTAGAGGTCATCGGTAGGATGATAGATGTTCTCAGCAACTTGTGTTGCCAGAATAATATGATTGCCAATGGAGTATTTTTAAGATTCTTGGAGATGTAAGAGTTGTTTCTGTCCATACATCACTCTTCTCATGTCACTAAGGTCATTGATTGTTTCCATGTGCTATATCGCAAATTGCTCACAATTTTAACTATGTGATCCAGAGGAATGTTTGACAAGGAAAGAATTGCAAAGTTGAAGAAGGGAGTTCTAATTGTAAACAATGCTCGAGGAGCAATTATGGACACTCAAGCAGTTGTTGATGCTTGTAACAGCGGTCATATTGCAGGTATTTTAACATAACTTGAACACATCATCCAGAGATGAGCCCTCAGCCTTAATATCAATTGAACACACCATTATATTTTTTTCTTCAATTCTTGCTTGTTTCTTTTCTTCAATATATTTTATCGACATTTGGAAGTAGTTCCATATCTTGTGGAATTGCCGAATCCTTTGAAGAAAGAAGTACTTCTAAAACTATATTGAGTTCTTTTCTTTCGGTTATTTCCCCCCAAATTTAGGATACAGTGGAGATGTTTGGTACCCA</genome_strand>
        <mrna_strand>TGAACTGATGCGAATCTTAATTCTTGTCCGAAATTTCTTACCTGGACATCATCAGGTTATCAATGGGGAGTGGAATGTTGCTGCAATTGCGCACAGAGCTTATGATTTGGAAGGCAAGACTGTTGGAACTGTTGGTGCAGGACGTATTGGCAGACTTTTACTCCAGCGATTGAAGCCATTTAACTGTAATCTACTTTACCATGACCGTCTTAAGATGGATTCTGAGCTAGAGAATCAAATTGGAGCAAAGTTTGAGGAAGATCTCGATAAGATGCTCTCGAAATGTGACATAGTGGTCATCAATACGCCTCTTACAGAGAAAACAAA.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGGAATGTTTGACAAGGAAAGAATTGCAAAGTTGAAGAAGGGAGTTCTAATTGTAAACAATGCTCGAGGAGCAATTATGGACACTCAAGCAGTTGTTGATGCTTGTAACAGCGGTCATATTGCAG...........................................................................................................................................................................................................................................GATACAGTGGAGATGTTTGGTACCCA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0236E02-u8qcS/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E239661" ref_strand="+" ref_description="SGN-E239661 [cLED-33-G15]">
      <seq>tgaactgatgcgaatcttaattcttgtccgaaatttcttacctggacatcatcaggttatcaatggggagtggaatgttgctgcaattgcgcacagagcttatgatttggaaggcaagactgttggaactgttggtgcaggacgtattggcagacttttactccagcgattgaagccatttaactgtaatctactttaccatgaccgtcttaagatggattctgagctagagaatcaaattggagcaaagtttgaggaagatctcgataagatgctctcgaaatgtgacatagtggtcatcaatacgcctcttacagagaaaacaaaaggaatgtttgacaaggaaagaattgcaaagttgaagaagggagttctaattgtaaacaatgctcgaggagcaattatggacactcaagcagttgttgatgct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0236E02-u8qcS/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0236E02.1" temp_strand="+" temp_description="C02HBa0236E02.1  AC215430.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0236E02 sequenced_by:kribb upload_account_name:korea">
        <position start="67679" stop="69449"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="67979" g_stop="68305" g_length="327"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="327" r_length="327" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="68306" i_stop="69046" i_length="741">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.768" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="69047" g_stop="69149" g_length="103"/>
          <reference_exon_boundary r_type="cDNA" r_start="328" r_stop="430" r_length="103" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0236E02.1" gen_strand="+" ref_id="SGN-E239661" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>430</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0236E02.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E239661" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="67979" e_stop="68305"/>
          <exon e_start="69047" e_stop="69149"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGAACTGATGCGAATCTTAATTCTTGTCCGAAATTTCTTACCTGGACATCATCAGGTTATCAATGGGGAGTGGAATGTTGCTGCAATTGCGCACAGAGCTTATGATTTGGAAGGCAAGACTGTTGGAACTGTTGGTGCAGGACGTATTGGCAGACTTTTACTCCAGCGATTGAAGCCATTTAACTGTAATCTACTTTACCATGACCGTCTTAAGATGGATTCTGAGCTAGAGAATCAAATTGGAGCAAAGTTTGAGGAAGATCTCGATAAGATGCTCTCGAAATGTGACATAGTGGTCATCAATACGCCTCTTACAGAGAAAACAAAGTAAGGTTTCTGTTTCTGTAATTACCCGTCGTAAACCTATACAATAATATTTATTGACAAAGCTTCTTATATTCAAGTTATTTTAACAATGACTTAATTATGAAATGAACTAAGTAAGCTAAAGTGAATATTCATTGAGAATGAAATATGATATTTAGCGAAGGGAAGGAGAATCTTTGGTGTCATCGTAATTTTTTGGTATCACTCTAGATCATATATAAAGTAGTTGTATATTTAGATTCCCCGATTGTATTCCCTAAGTTAAGAAATTCTCTTGAGCATCCACCATATACTATGATACATGACTTTGGCTAAGCTCAAAAAGACTATCTCAATGATGGCCCTCCATGGATTCTCCACCTATATAAGCCACGGCTAAAGAAAAATTGCTTGGCCAAGTTGTCTTTTACCTTTGGCATGATGCAAAAAACATTTGATATTCTTTCTGTGTGAACCACTGCTACGAGTAATATGTTCTTAGAGATCATGTTTTCTTTTTGTTCTTCCTTTAATTTTCTATTTGAAGATTTGTCATCAGTTAGAGGTCATCGGTAGGATGATAGATGTTCTCAGCAACTTGTGTTGCCAGAATAATATGATTGCCAATGGAGTATTTTTAAGATTCTTGGAGATGTAAGAGTTGTTTCTGTCCATACATCACTCTTCTCATGTCACTAAGGTCATTGATTGTTTCCATGTGCTATATCGCAAATTGCTCACAATTTTAACTATGTGATCCAGAGGAATGTTTGACAAGGAAAGAATTGCAAAGTTGAAGAAGGGAGTTCTAATTGTAAACAATGCTCGAGGAGCAATTATGGACACTCAAGCAGTTGTTGATGCT</genome_strand>
        <mrna_strand>TGAACTGATGCGAATCTTAATTCTTGTCCGAAATTTCTTACCTGGACATCATCAGGTTATCAATGGGGAGTGGAATGTTGCTGCAATTGCGCACAGAGCTTATGATTTGGAAGGCAAGACTGTTGGAACTGTTGGTGCAGGACGTATTGGCAGACTTTTACTCCAGCGATTGAAGCCATTTAACTGTAATCTACTTTACCATGACCGTCTTAAGATGGATTCTGAGCTAGAGAATCAAATTGGAGCAAAGTTTGAGGAAGATCTCGATAAGATGCTCTCGAAATGTGACATAGTGGTCATCAATACGCCTCTTACAGAGAAAACAAA.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGGAATGTTTGACAAGGAAAGAATTGCAAAGTTGAAGAAGGGAGTTCTAATTGTAAACAATGCTCGAGGAGCAATTATGGACACTCAAGCAGTTGTTGATGCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0236E02-u8qcS/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E242830" ref_strand="+" ref_description="SGN-E242830 [cLED-31-F10]">
      <seq>tgaactgatgcgaatcttaattcttgtccgaaatttcttacctggacatcatcaggttatcaatggggagtggaatgttgctgcaattgcgcacagagcttatgatttggaaggcaagactgttggaactgttggtgcangacgtattggcagacttttactccagcgattgaagccatttaactgtaatctactttaccatgaccgtcttaagatggattctgagctagagaatcaaattggagcaaagtttgaggaagatctcgataagatgctctcgaaatgtgacatagtggtcatcaatacncctcttacagagaaaacaaaaggaatgtttgacaaggaaagaattgcaaagttgaagaagggagttctaattgtaaacaatgc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0236E02-u8qcS/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0236E02.1" temp_strand="+" temp_description="C02HBa0236E02.1  AC215430.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0236E02 sequenced_by:kribb upload_account_name:korea">
        <position start="67679" stop="69409"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="67979" g_stop="68305" g_length="327"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="327" r_length="327" r_score="0.994"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="68306" i_stop="69046" i_length="741">
            <donor d_prob="0.995" d_score="0.98"/>
            <acceptor a_prob="0.768" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="69047" g_stop="69109" g_length="63"/>
          <reference_exon_boundary r_type="cDNA" r_start="328" r_stop="390" r_length="63" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0236E02.1" gen_strand="+" ref_id="SGN-E242830" ref_strand="+">
        <total_alignment_score>0.995</total_alignment_score>
        <cumulative_length_of_scored_exons>390</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0236E02.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E242830" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="67979" e_stop="68305"/>
          <exon e_start="69047" e_stop="69109"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGAACTGATGCGAATCTTAATTCTTGTCCGAAATTTCTTACCTGGACATCATCAGGTTATCAATGGGGAGTGGAATGTTGCTGCAATTGCGCACAGAGCTTATGATTTGGAAGGCAAGACTGTTGGAACTGTTGGTGCAGGACGTATTGGCAGACTTTTACTCCAGCGATTGAAGCCATTTAACTGTAATCTACTTTACCATGACCGTCTTAAGATGGATTCTGAGCTAGAGAATCAAATTGGAGCAAAGTTTGAGGAAGATCTCGATAAGATGCTCTCGAAATGTGACATAGTGGTCATCAATACGCCTCTTACAGAGAAAACAAAGTAAGGTTTCTGTTTCTGTAATTACCCGTCGTAAACCTATACAATAATATTTATTGACAAAGCTTCTTATATTCAAGTTATTTTAACAATGACTTAATTATGAAATGAACTAAGTAAGCTAAAGTGAATATTCATTGAGAATGAAATATGATATTTAGCGAAGGGAAGGAGAATCTTTGGTGTCATCGTAATTTTTTGGTATCACTCTAGATCATATATAAAGTAGTTGTATATTTAGATTCCCCGATTGTATTCCCTAAGTTAAGAAATTCTCTTGAGCATCCACCATATACTATGATACATGACTTTGGCTAAGCTCAAAAAGACTATCTCAATGATGGCCCTCCATGGATTCTCCACCTATATAAGCCACGGCTAAAGAAAAATTGCTTGGCCAAGTTGTCTTTTACCTTTGGCATGATGCAAAAAACATTTGATATTCTTTCTGTGTGAACCACTGCTACGAGTAATATGTTCTTAGAGATCATGTTTTCTTTTTGTTCTTCCTTTAATTTTCTATTTGAAGATTTGTCATCAGTTAGAGGTCATCGGTAGGATGATAGATGTTCTCAGCAACTTGTGTTGCCAGAATAATATGATTGCCAATGGAGTATTTTTAAGATTCTTGGAGATGTAAGAGTTGTTTCTGTCCATACATCACTCTTCTCATGTCACTAAGGTCATTGATTGTTTCCATGTGCTATATCGCAAATTGCTCACAATTTTAACTATGTGATCCAGAGGAATGTTTGACAAGGAAAGAATTGCAAAGTTGAAGAAGGGAGTTCTAATTGTAAACAATGC</genome_strand>
        <mrna_strand>TGAACTGATGCGAATCTTAATTCTTGTCCGAAATTTCTTACCTGGACATCATCAGGTTATCAATGGGGAGTGGAATGTTGCTGCAATTGCGCACAGAGCTTATGATTTGGAAGGCAAGACTGTTGGAACTGTTGGTGCANGACGTATTGGCAGACTTTTACTCCAGCGATTGAAGCCATTTAACTGTAATCTACTTTACCATGACCGTCTTAAGATGGATTCTGAGCTAGAGAATCAAATTGGAGCAAAGTTTGAGGAAGATCTCGATAAGATGCTCTCGAAATGTGACATAGTGGTCATCAATACNCCTCTTACAGAGAAAACAAA.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGGAATGTTTGACAAGGAAAGAATTGCAAAGTTGAAGAAGGGAGTTCTAATTGTAAACAATGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0236E02-u8qcS/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E289438" ref_strand="+" ref_description="SGN-E289438 [cLET-3-L17]">
      <seq>gcgaatcttaattcttgtccgaaatttcttacctggacatcatcaggttatcaatggggagtggaatgttgctgcaattgcgcacagagcttatgatttggaaggcaagactgttggaactgttggtgcaggacgtattggcagacttttactccagcgattgaagccatttaactgtaatctactttaccatgaccgtcttaagatggattctgagctagagaatcaaattggagcaaagtttgaggaagatctcgataagatgctctcgaaatgtgacatagtggtcatcaatacgcctcttacagagaaaacaaaaggaatgtttgacaaggaaagaattgcaaagttgaagaagggagttctaattgtaaacaatgctcgaggagcaattatggacactcaagcagttgttgatgcttgtaacagcggtcatattgcaggatacagtggagatgtttggtacccacaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0236E02-u8qcS/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0236E02.1" temp_strand="+" temp_description="C02HBa0236E02.1  AC215430.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0236E02 sequenced_by:kribb upload_account_name:korea">
        <position start="67688" stop="69735"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="67988" g_stop="68305" g_length="318"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="318" r_length="318" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="68306" i_stop="69046" i_length="741">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.768" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="69047" g_stop="69171" g_length="125"/>
          <reference_exon_boundary r_type="cDNA" r_start="319" r_stop="443" r_length="125" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="69172" i_stop="69406" i_length="235">
            <donor d_prob="0.983" d_score="1.00"/>
            <acceptor a_prob="0.964" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="69407" g_stop="69435" g_length="29"/>
          <reference_exon_boundary r_type="cDNA" r_start="444" r_stop="472" r_length="29" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0236E02.1" gen_strand="+" ref_id="SGN-E289438" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>472</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0236E02.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E289438" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="67988" e_stop="68305"/>
          <exon e_start="69047" e_stop="69171"/>
          <exon e_start="69407" e_stop="69435"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCGAATCTTAATTCTTGTCCGAAATTTCTTACCTGGACATCATCAGGTTATCAATGGGGAGTGGAATGTTGCTGCAATTGCGCACAGAGCTTATGATTTGGAAGGCAAGACTGTTGGAACTGTTGGTGCAGGACGTATTGGCAGACTTTTACTCCAGCGATTGAAGCCATTTAACTGTAATCTACTTTACCATGACCGTCTTAAGATGGATTCTGAGCTAGAGAATCAAATTGGAGCAAAGTTTGAGGAAGATCTCGATAAGATGCTCTCGAAATGTGACATAGTGGTCATCAATACGCCTCTTACAGAGAAAACAAAGTAAGGTTTCTGTTTCTGTAATTACCCGTCGTAAACCTATACAATAATATTTATTGACAAAGCTTCTTATATTCAAGTTATTTTAACAATGACTTAATTATGAAATGAACTAAGTAAGCTAAAGTGAATATTCATTGAGAATGAAATATGATATTTAGCGAAGGGAAGGAGAATCTTTGGTGTCATCGTAATTTTTTGGTATCACTCTAGATCATATATAAAGTAGTTGTATATTTAGATTCCCCGATTGTATTCCCTAAGTTAAGAAATTCTCTTGAGCATCCACCATATACTATGATACATGACTTTGGCTAAGCTCAAAAAGACTATCTCAATGATGGCCCTCCATGGATTCTCCACCTATATAAGCCACGGCTAAAGAAAAATTGCTTGGCCAAGTTGTCTTTTACCTTTGGCATGATGCAAAAAACATTTGATATTCTTTCTGTGTGAACCACTGCTACGAGTAATATGTTCTTAGAGATCATGTTTTCTTTTTGTTCTTCCTTTAATTTTCTATTTGAAGATTTGTCATCAGTTAGAGGTCATCGGTAGGATGATAGATGTTCTCAGCAACTTGTGTTGCCAGAATAATATGATTGCCAATGGAGTATTTTTAAGATTCTTGGAGATGTAAGAGTTGTTTCTGTCCATACATCACTCTTCTCATGTCACTAAGGTCATTGATTGTTTCCATGTGCTATATCGCAAATTGCTCACAATTTTAACTATGTGATCCAGAGGAATGTTTGACAAGGAAAGAATTGCAAAGTTGAAGAAGGGAGTTCTAATTGTAAACAATGCTCGAGGAGCAATTATGGACACTCAAGCAGTTGTTGATGCTTGTAACAGCGGTCATATTGCAGGTATTTTAACATAACTTGAACACATCATCCAGAGATGAGCCCTCAGCCTTAATATCAATTGAACACACCATTATATTTTTTTCTTCAATTCTTGCTTGTTTCTTTTCTTCAATATATTTTATCGACATTTGGAAGTAGTTCCATATCTTGTGGAATTGCCGAATCCTTTGAAGAAAGAAGTACTTCTAAAACTATATTGAGTTCTTTTCTTTCGGTTATTTCCCCCCAAATTTAGGATACAGTGGAGATGTTTGGTACCCACAA</genome_strand>
        <mrna_strand>GCGAATCTTAATTCTTGTCCGAAATTTCTTACCTGGACATCATCAGGTTATCAATGGGGAGTGGAATGTTGCTGCAATTGCGCACAGAGCTTATGATTTGGAAGGCAAGACTGTTGGAACTGTTGGTGCAGGACGTATTGGCAGACTTTTACTCCAGCGATTGAAGCCATTTAACTGTAATCTACTTTACCATGACCGTCTTAAGATGGATTCTGAGCTAGAGAATCAAATTGGAGCAAAGTTTGAGGAAGATCTCGATAAGATGCTCTCGAAATGTGACATAGTGGTCATCAATACGCCTCTTACAGAGAAAACAAA.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGGAATGTTTGACAAGGAAAGAATTGCAAAGTTGAAGAAGGGAGTTCTAATTGTAAACAATGCTCGAGGAGCAATTATGGACACTCAAGCAGTTGTTGATGCTTGTAACAGCGGTCATATTGCAG...........................................................................................................................................................................................................................................GATACAGTGGAGATGTTTGGTACCCACAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0236E02-u8qcS/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E710244" ref_strand="+" ref_description="SGN-E710244 [FA54DB04]">
      <seq>aatcttaattcttgtccgaaatttcttacctggacatcatcaggttatcaatggggagtggaatgttgctgcaattgcgcacagagcttatgatttggaaggcaagactgttggaactgttggtgcaggacgtattggcagacttttactccagcgattgaagccatttaactgtaatctactttaccatgaccgtcttaagatggattctgagctagagaatcaaattggagcaaagtttgaggaagatctcgataagatgctctcgaaatgtgacatagtggtcatcaatacgcctcttacagagaaaacaaaaggaatgtttgacaaggaaagaattgcaaagttgaagaagggagttctaattgtaaacaatgctcgaggagcaattatggacactcaagcagttgttgatgcttgtaacagcggtcatattgcaggatacagtggagatgtttggcacccacaaccagctcccaaggaccatctatggcgttacatgccaaaccaagctatgactcctcacatttctgggactaccattgatgcacagttgaggtatgcagctggaacaaaggatatgttgg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0236E02-u8qcS/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0236E02.1" temp_strand="+" temp_description="C02HBa0236E02.1  AC215430.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0236E02 sequenced_by:kribb upload_account_name:korea">
        <position start="67691" stop="69964"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="67991" g_stop="68305" g_length="315"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="315" r_length="315" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="68306" i_stop="69046" i_length="741">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.768" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="69047" g_stop="69171" g_length="125"/>
          <reference_exon_boundary r_type="cDNA" r_start="316" r_stop="440" r_length="125" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="69172" i_stop="69406" i_length="235">
            <donor d_prob="0.983" d_score="1.00"/>
            <acceptor a_prob="0.964" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="69407" g_stop="69519" g_length="113"/>
          <reference_exon_boundary r_type="cDNA" r_start="441" r_stop="553" r_length="113" r_score="0.991"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="69520" i_stop="69630" i_length="111">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.989" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="69631" g_stop="69664" g_length="34"/>
          <reference_exon_boundary r_type="cDNA" r_start="554" r_stop="587" r_length="34" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0236E02.1" gen_strand="+" ref_id="SGN-E710244" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>587</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0236E02.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E710244" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="67991" e_stop="68305"/>
          <exon e_start="69047" e_stop="69171"/>
          <exon e_start="69407" e_stop="69519"/>
          <exon e_start="69631" e_stop="69664"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AATCTTAATTCTTGTCCGAAATTTCTTACCTGGACATCATCAGGTTATCAATGGGGAGTGGAATGTTGCTGCAATTGCGCACAGAGCTTATGATTTGGAAGGCAAGACTGTTGGAACTGTTGGTGCAGGACGTATTGGCAGACTTTTACTCCAGCGATTGAAGCCATTTAACTGTAATCTACTTTACCATGACCGTCTTAAGATGGATTCTGAGCTAGAGAATCAAATTGGAGCAAAGTTTGAGGAAGATCTCGATAAGATGCTCTCGAAATGTGACATAGTGGTCATCAATACGCCTCTTACAGAGAAAACAAAGTAAGGTTTCTGTTTCTGTAATTACCCGTCGTAAACCTATACAATAATATTTATTGACAAAGCTTCTTATATTCAAGTTATTTTAACAATGACTTAATTATGAAATGAACTAAGTAAGCTAAAGTGAATATTCATTGAGAATGAAATATGATATTTAGCGAAGGGAAGGAGAATCTTTGGTGTCATCGTAATTTTTTGGTATCACTCTAGATCATATATAAAGTAGTTGTATATTTAGATTCCCCGATTGTATTCCCTAAGTTAAGAAATTCTCTTGAGCATCCACCATATACTATGATACATGACTTTGGCTAAGCTCAAAAAGACTATCTCAATGATGGCCCTCCATGGATTCTCCACCTATATAAGCCACGGCTAAAGAAAAATTGCTTGGCCAAGTTGTCTTTTACCTTTGGCATGATGCAAAAAACATTTGATATTCTTTCTGTGTGAACCACTGCTACGAGTAATATGTTCTTAGAGATCATGTTTTCTTTTTGTTCTTCCTTTAATTTTCTATTTGAAGATTTGTCATCAGTTAGAGGTCATCGGTAGGATGATAGATGTTCTCAGCAACTTGTGTTGCCAGAATAATATGATTGCCAATGGAGTATTTTTAAGATTCTTGGAGATGTAAGAGTTGTTTCTGTCCATACATCACTCTTCTCATGTCACTAAGGTCATTGATTGTTTCCATGTGCTATATCGCAAATTGCTCACAATTTTAACTATGTGATCCAGAGGAATGTTTGACAAGGAAAGAATTGCAAAGTTGAAGAAGGGAGTTCTAATTGTAAACAATGCTCGAGGAGCAATTATGGACACTCAAGCAGTTGTTGATGCTTGTAACAGCGGTCATATTGCAGGTATTTTAACATAACTTGAACACATCATCCAGAGATGAGCCCTCAGCCTTAATATCAATTGAACACACCATTATATTTTTTTCTTCAATTCTTGCTTGTTTCTTTTCTTCAATATATTTTATCGACATTTGGAAGTAGTTCCATATCTTGTGGAATTGCCGAATCCTTTGAAGAAAGAAGTACTTCTAAAACTATATTGAGTTCTTTTCTTTCGGTTATTTCCCCCCAAATTTAGGATACAGTGGAGATGTTTGGTACCCACAACCAGCTCCCAAGGACCATCTATGGCGTTACATGCCAAACCAAGCTATGACTCCTCACATTTCTGGGACTACCATTGATGCACAGGTTTGTAAATACTCTGTTTCTCTAATTTCTTTAGGCTTTGCTTTTTCTTTACTTTCACGACATTATAATTGCGATTAAACTGAGAGAAGCTTGTTACTTTCAATTTCGCAGTTGAGGTATGCAGCTGGAACAAAGGATATGTTGG</genome_strand>
        <mrna_strand>AATCTTAATTCTTGTCCGAAATTTCTTACCTGGACATCATCAGGTTATCAATGGGGAGTGGAATGTTGCTGCAATTGCGCACAGAGCTTATGATTTGGAAGGCAAGACTGTTGGAACTGTTGGTGCAGGACGTATTGGCAGACTTTTACTCCAGCGATTGAAGCCATTTAACTGTAATCTACTTTACCATGACCGTCTTAAGATGGATTCTGAGCTAGAGAATCAAATTGGAGCAAAGTTTGAGGAAGATCTCGATAAGATGCTCTCGAAATGTGACATAGTGGTCATCAATACGCCTCTTACAGAGAAAACAAA.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGGAATGTTTGACAAGGAAAGAATTGCAAAGTTGAAGAAGGGAGTTCTAATTGTAAACAATGCTCGAGGAGCAATTATGGACACTCAAGCAGTTGTTGATGCTTGTAACAGCGGTCATATTGCAG...........................................................................................................................................................................................................................................GATACAGTGGAGATGTTTGGCACCCACAACCAGCTCCCAAGGACCATCTATGGCGTTACATGCCAAACCAAGCTATGACTCCTCACATTTCTGGGACTACCATTGATGCACAG...............................................................................................................TTGAGGTATGCAGCTGGAACAAAGGATATGTTGG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0236E02-u8qcS/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E234038" ref_strand="+" ref_description="SGN-E234038 [cLEL-8-H20](-)">
      <seq>tccgaaatttcttacctggacatcatcaggttatcaatggggagtggaatgttgctgcaattgcgcacagagcttatgatttggaaggcaagactgttggaactgttggtgcaggacgtattggcagacttttactccagcgattgaagccatttaactgtaatctactttaccatgaccgtcttaagatggattctgagctagagaatcaaattggagcaaagtttgaggaagatctcgataagatgctctcgaaatgtgacatagtggtcatcaatacgcctcttacagagaaaacaaaaggaatgtttgacaaggaaagaattgcaaagttgaagaagggagttctaattgtaaacaat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0236E02-u8qcS/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0236E02.1" temp_strand="+" temp_description="C02HBa0236E02.1  AC215430.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0236E02 sequenced_by:kribb upload_account_name:korea">
        <position start="67705" stop="69407"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="68005" g_stop="68305" g_length="301"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="301" r_length="301" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="68306" i_stop="69046" i_length="741">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.768" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="69047" g_stop="69107" g_length="61"/>
          <reference_exon_boundary r_type="cDNA" r_start="302" r_stop="362" r_length="61" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0236E02.1" gen_strand="+" ref_id="SGN-E234038" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>362</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0236E02.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E234038" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="68005" e_stop="68305"/>
          <exon e_start="69047" e_stop="69107"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCCGAAATTTCTTACCTGGACATCATCAGGTTATCAATGGGGAGTGGAATGTTGCTGCAATTGCGCACAGAGCTTATGATTTGGAAGGCAAGACTGTTGGAACTGTTGGTGCAGGACGTATTGGCAGACTTTTACTCCAGCGATTGAAGCCATTTAACTGTAATCTACTTTACCATGACCGTCTTAAGATGGATTCTGAGCTAGAGAATCAAATTGGAGCAAAGTTTGAGGAAGATCTCGATAAGATGCTCTCGAAATGTGACATAGTGGTCATCAATACGCCTCTTACAGAGAAAACAAAGTAAGGTTTCTGTTTCTGTAATTACCCGTCGTAAACCTATACAATAATATTTATTGACAAAGCTTCTTATATTCAAGTTATTTTAACAATGACTTAATTATGAAATGAACTAAGTAAGCTAAAGTGAATATTCATTGAGAATGAAATATGATATTTAGCGAAGGGAAGGAGAATCTTTGGTGTCATCGTAATTTTTTGGTATCACTCTAGATCATATATAAAGTAGTTGTATATTTAGATTCCCCGATTGTATTCCCTAAGTTAAGAAATTCTCTTGAGCATCCACCATATACTATGATACATGACTTTGGCTAAGCTCAAAAAGACTATCTCAATGATGGCCCTCCATGGATTCTCCACCTATATAAGCCACGGCTAAAGAAAAATTGCTTGGCCAAGTTGTCTTTTACCTTTGGCATGATGCAAAAAACATTTGATATTCTTTCTGTGTGAACCACTGCTACGAGTAATATGTTCTTAGAGATCATGTTTTCTTTTTGTTCTTCCTTTAATTTTCTATTTGAAGATTTGTCATCAGTTAGAGGTCATCGGTAGGATGATAGATGTTCTCAGCAACTTGTGTTGCCAGAATAATATGATTGCCAATGGAGTATTTTTAAGATTCTTGGAGATGTAAGAGTTGTTTCTGTCCATACATCACTCTTCTCATGTCACTAAGGTCATTGATTGTTTCCATGTGCTATATCGCAAATTGCTCACAATTTTAACTATGTGATCCAGAGGAATGTTTGACAAGGAAAGAATTGCAAAGTTGAAGAAGGGAGTTCTAATTGTAAACAAT</genome_strand>
        <mrna_strand>TCCGAAATTTCTTACCTGGACATCATCAGGTTATCAATGGGGAGTGGAATGTTGCTGCAATTGCGCACAGAGCTTATGATTTGGAAGGCAAGACTGTTGGAACTGTTGGTGCAGGACGTATTGGCAGACTTTTACTCCAGCGATTGAAGCCATTTAACTGTAATCTACTTTACCATGACCGTCTTAAGATGGATTCTGAGCTAGAGAATCAAATTGGAGCAAAGTTTGAGGAAGATCTCGATAAGATGCTCTCGAAATGTGACATAGTGGTCATCAATACGCCTCTTACAGAGAAAACAAA.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGGAATGTTTGACAAGGAAAGAATTGCAAAGTTGAAGAAGGGAGTTCTAATTGTAAACAAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0236E02-u8qcS/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E228246" ref_strand="+" ref_description="SGN-E228246 [cLED-2-N13]">
      <seq>ttacctggacatcatcaggttatcaatggggagtggaatgttgctgcaattgcgcacagagcttatgatttggaaggcaagactgttggaactgttggtgcaggacgtattggcagacttttactccagcgattgaagccatttaactgtaatctactttaccatgaccgtcttaagatggattctgagctagagaatcaaattggagcaaagtttgaggaagatctcgataagatgctctcgaaatgtgacatagtggtcatcaatacgcctcttacagagaaaacaaaaggaatgtttgacaaggaaagaattgcaaagttgaagaagggagttctaattgtaaacaatgctcgaggagcaattatggacactcaagcagttgttgatgcttgtaacagcggtcatattgcaggatacagtggagatgtttggtacccacaaccagctcccaaggaccatctatggcgttacatgccaaaccaagctatgactcctcacat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0236E02-u8qcS/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0236E02.1" temp_strand="+" temp_description="C02HBa0236E02.1  AC215430.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0236E02 sequenced_by:kribb upload_account_name:korea">
        <position start="67716" stop="69794"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="68016" g_stop="68305" g_length="290"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="290" r_length="290" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="68306" i_stop="69046" i_length="741">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.768" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="69047" g_stop="69171" g_length="125"/>
          <reference_exon_boundary r_type="cDNA" r_start="291" r_stop="415" r_length="125" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="69172" i_stop="69406" i_length="235">
            <donor d_prob="0.983" d_score="1.00"/>
            <acceptor a_prob="0.964" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="69407" g_stop="69494" g_length="88"/>
          <reference_exon_boundary r_type="cDNA" r_start="416" r_stop="503" r_length="88" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0236E02.1" gen_strand="+" ref_id="SGN-E228246" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>503</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0236E02.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E228246" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="68016" e_stop="68305"/>
          <exon e_start="69047" e_stop="69171"/>
          <exon e_start="69407" e_stop="69494"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTACCTGGACATCATCAGGTTATCAATGGGGAGTGGAATGTTGCTGCAATTGCGCACAGAGCTTATGATTTGGAAGGCAAGACTGTTGGAACTGTTGGTGCAGGACGTATTGGCAGACTTTTACTCCAGCGATTGAAGCCATTTAACTGTAATCTACTTTACCATGACCGTCTTAAGATGGATTCTGAGCTAGAGAATCAAATTGGAGCAAAGTTTGAGGAAGATCTCGATAAGATGCTCTCGAAATGTGACATAGTGGTCATCAATACGCCTCTTACAGAGAAAACAAAGTAAGGTTTCTGTTTCTGTAATTACCCGTCGTAAACCTATACAATAATATTTATTGACAAAGCTTCTTATATTCAAGTTATTTTAACAATGACTTAATTATGAAATGAACTAAGTAAGCTAAAGTGAATATTCATTGAGAATGAAATATGATATTTAGCGAAGGGAAGGAGAATCTTTGGTGTCATCGTAATTTTTTGGTATCACTCTAGATCATATATAAAGTAGTTGTATATTTAGATTCCCCGATTGTATTCCCTAAGTTAAGAAATTCTCTTGAGCATCCACCATATACTATGATACATGACTTTGGCTAAGCTCAAAAAGACTATCTCAATGATGGCCCTCCATGGATTCTCCACCTATATAAGCCACGGCTAAAGAAAAATTGCTTGGCCAAGTTGTCTTTTACCTTTGGCATGATGCAAAAAACATTTGATATTCTTTCTGTGTGAACCACTGCTACGAGTAATATGTTCTTAGAGATCATGTTTTCTTTTTGTTCTTCCTTTAATTTTCTATTTGAAGATTTGTCATCAGTTAGAGGTCATCGGTAGGATGATAGATGTTCTCAGCAACTTGTGTTGCCAGAATAATATGATTGCCAATGGAGTATTTTTAAGATTCTTGGAGATGTAAGAGTTGTTTCTGTCCATACATCACTCTTCTCATGTCACTAAGGTCATTGATTGTTTCCATGTGCTATATCGCAAATTGCTCACAATTTTAACTATGTGATCCAGAGGAATGTTTGACAAGGAAAGAATTGCAAAGTTGAAGAAGGGAGTTCTAATTGTAAACAATGCTCGAGGAGCAATTATGGACACTCAAGCAGTTGTTGATGCTTGTAACAGCGGTCATATTGCAGGTATTTTAACATAACTTGAACACATCATCCAGAGATGAGCCCTCAGCCTTAATATCAATTGAACACACCATTATATTTTTTTCTTCAATTCTTGCTTGTTTCTTTTCTTCAATATATTTTATCGACATTTGGAAGTAGTTCCATATCTTGTGGAATTGCCGAATCCTTTGAAGAAAGAAGTACTTCTAAAACTATATTGAGTTCTTTTCTTTCGGTTATTTCCCCCCAAATTTAGGATACAGTGGAGATGTTTGGTACCCACAACCAGCTCCCAAGGACCATCTATGGCGTTACATGCCAAACCAAGCTATGACTCCTCACAT</genome_strand>
        <mrna_strand>TTACCTGGACATCATCAGGTTATCAATGGGGAGTGGAATGTTGCTGCAATTGCGCACAGAGCTTATGATTTGGAAGGCAAGACTGTTGGAACTGTTGGTGCAGGACGTATTGGCAGACTTTTACTCCAGCGATTGAAGCCATTTAACTGTAATCTACTTTACCATGACCGTCTTAAGATGGATTCTGAGCTAGAGAATCAAATTGGAGCAAAGTTTGAGGAAGATCTCGATAAGATGCTCTCGAAATGTGACATAGTGGTCATCAATACGCCTCTTACAGAGAAAACAAA.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGGAATGTTTGACAAGGAAAGAATTGCAAAGTTGAAGAAGGGAGTTCTAATTGTAAACAATGCTCGAGGAGCAATTATGGACACTCAAGCAGTTGTTGATGCTTGTAACAGCGGTCATATTGCAG...........................................................................................................................................................................................................................................GATACAGTGGAGATGTTTGGTACCCACAACCAGCTCCCAAGGACCATCTATGGCGTTACATGCCAAACCAAGCTATGACTCCTCACAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0236E02-u8qcS/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E240506" ref_strand="+" ref_description="SGN-E240506 [cLED-21-J24]">
      <seq>ttacctggacatcatcaggttatcaatggggagtggaatgttgctgcaattgcgcacagagcttatgatttggaaggcaagactgttggaactgttggtgcaggacgtattggcagacttttactccagcgattgaagccatttaactgtaatctactttaccatgaccgtcttaagatggattctgagctagagaatcaaattggagcaaagtttgaggaagatctcgataagatgctctcgaaatgtgacatagtggtcatcaatacgcctcttacagagaaaacaaaaggaatgtttgacaaggaaagaattgcaaagttgaagaagggagttctaattgtaaacaatgctcga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0236E02-u8qcS/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0236E02.1" temp_strand="+" temp_description="C02HBa0236E02.1  AC215430.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0236E02 sequenced_by:kribb upload_account_name:korea">
        <position start="67716" stop="69413"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="68016" g_stop="68305" g_length="290"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="290" r_length="290" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="68306" i_stop="69046" i_length="741">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.768" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="69047" g_stop="69113" g_length="67"/>
          <reference_exon_boundary r_type="cDNA" r_start="291" r_stop="357" r_length="67" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0236E02.1" gen_strand="+" ref_id="SGN-E240506" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>357</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0236E02.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E240506" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="68016" e_stop="68305"/>
          <exon e_start="69047" e_stop="69113"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTACCTGGACATCATCAGGTTATCAATGGGGAGTGGAATGTTGCTGCAATTGCGCACAGAGCTTATGATTTGGAAGGCAAGACTGTTGGAACTGTTGGTGCAGGACGTATTGGCAGACTTTTACTCCAGCGATTGAAGCCATTTAACTGTAATCTACTTTACCATGACCGTCTTAAGATGGATTCTGAGCTAGAGAATCAAATTGGAGCAAAGTTTGAGGAAGATCTCGATAAGATGCTCTCGAAATGTGACATAGTGGTCATCAATACGCCTCTTACAGAGAAAACAAAGTAAGGTTTCTGTTTCTGTAATTACCCGTCGTAAACCTATACAATAATATTTATTGACAAAGCTTCTTATATTCAAGTTATTTTAACAATGACTTAATTATGAAATGAACTAAGTAAGCTAAAGTGAATATTCATTGAGAATGAAATATGATATTTAGCGAAGGGAAGGAGAATCTTTGGTGTCATCGTAATTTTTTGGTATCACTCTAGATCATATATAAAGTAGTTGTATATTTAGATTCCCCGATTGTATTCCCTAAGTTAAGAAATTCTCTTGAGCATCCACCATATACTATGATACATGACTTTGGCTAAGCTCAAAAAGACTATCTCAATGATGGCCCTCCATGGATTCTCCACCTATATAAGCCACGGCTAAAGAAAAATTGCTTGGCCAAGTTGTCTTTTACCTTTGGCATGATGCAAAAAACATTTGATATTCTTTCTGTGTGAACCACTGCTACGAGTAATATGTTCTTAGAGATCATGTTTTCTTTTTGTTCTTCCTTTAATTTTCTATTTGAAGATTTGTCATCAGTTAGAGGTCATCGGTAGGATGATAGATGTTCTCAGCAACTTGTGTTGCCAGAATAATATGATTGCCAATGGAGTATTTTTAAGATTCTTGGAGATGTAAGAGTTGTTTCTGTCCATACATCACTCTTCTCATGTCACTAAGGTCATTGATTGTTTCCATGTGCTATATCGCAAATTGCTCACAATTTTAACTATGTGATCCAGAGGAATGTTTGACAAGGAAAGAATTGCAAAGTTGAAGAAGGGAGTTCTAATTGTAAACAATGCTCGA</genome_strand>
        <mrna_strand>TTACCTGGACATCATCAGGTTATCAATGGGGAGTGGAATGTTGCTGCAATTGCGCACAGAGCTTATGATTTGGAAGGCAAGACTGTTGGAACTGTTGGTGCAGGACGTATTGGCAGACTTTTACTCCAGCGATTGAAGCCATTTAACTGTAATCTACTTTACCATGACCGTCTTAAGATGGATTCTGAGCTAGAGAATCAAATTGGAGCAAAGTTTGAGGAAGATCTCGATAAGATGCTCTCGAAATGTGACATAGTGGTCATCAATACGCCTCTTACAGAGAAAACAAA.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGGAATGTTTGACAAGGAAAGAATTGCAAAGTTGAAGAAGGGAGTTCTAATTGTAAACAATGCTCGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0236E02-u8qcS/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E265006" ref_strand="+" ref_description="SGN-E265006 [cLEI-10-P11]">
      <seq>gggagtggaatgttgctgcaattgcgcacagagcttatgatttggaaggcaagactgttggaactgttggtgcaggacgtattggcagacttttactccagcgattgaagccatttaactgtaatctactttaccatgaccgtcttaagatggattctgagctagagaatcaaattggagcaaagtttgaggaagatctcgataagatgctctcgaaatgtgacatagtggtcatcaatacgcctcttacagagaaaacaaaaggaatgtttgacaaggaaagaattgcaaagttgaagaagggagttctaattgtaaacaatgctcgaggagcaattatggacactcaagcagttgttgatgcttgtaacagcggtcatattgcaggatacagtggagatgtttggtacccacaaccagctcccaaggaccatctatggcgttacatgccaaaccaagctatgactcctcacatttctgggactaccattgatgcacagttgaggtatgcagctggaacaaaggatatgttggac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0236E02-u8qcS/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0236E02.1" temp_strand="+" temp_description="C02HBa0236E02.1  AC215430.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0236E02 sequenced_by:kribb upload_account_name:korea">
        <position start="67744" stop="69966"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="68044" g_stop="68305" g_length="262"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="262" r_length="262" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="68306" i_stop="69046" i_length="741">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.768" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="69047" g_stop="69171" g_length="125"/>
          <reference_exon_boundary r_type="cDNA" r_start="263" r_stop="387" r_length="125" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="69172" i_stop="69406" i_length="235">
            <donor d_prob="0.983" d_score="1.00"/>
            <acceptor a_prob="0.964" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="69407" g_stop="69519" g_length="113"/>
          <reference_exon_boundary r_type="cDNA" r_start="388" r_stop="500" r_length="113" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="69520" i_stop="69630" i_length="111">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.989" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="69631" g_stop="69666" g_length="36"/>
          <reference_exon_boundary r_type="cDNA" r_start="501" r_stop="536" r_length="36" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0236E02.1" gen_strand="+" ref_id="SGN-E265006" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>536</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0236E02.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E265006" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="68044" e_stop="68305"/>
          <exon e_start="69047" e_stop="69171"/>
          <exon e_start="69407" e_stop="69519"/>
          <exon e_start="69631" e_stop="69666"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGGAGTGGAATGTTGCTGCAATTGCGCACAGAGCTTATGATTTGGAAGGCAAGACTGTTGGAACTGTTGGTGCAGGACGTATTGGCAGACTTTTACTCCAGCGATTGAAGCCATTTAACTGTAATCTACTTTACCATGACCGTCTTAAGATGGATTCTGAGCTAGAGAATCAAATTGGAGCAAAGTTTGAGGAAGATCTCGATAAGATGCTCTCGAAATGTGACATAGTGGTCATCAATACGCCTCTTACAGAGAAAACAAAGTAAGGTTTCTGTTTCTGTAATTACCCGTCGTAAACCTATACAATAATATTTATTGACAAAGCTTCTTATATTCAAGTTATTTTAACAATGACTTAATTATGAAATGAACTAAGTAAGCTAAAGTGAATATTCATTGAGAATGAAATATGATATTTAGCGAAGGGAAGGAGAATCTTTGGTGTCATCGTAATTTTTTGGTATCACTCTAGATCATATATAAAGTAGTTGTATATTTAGATTCCCCGATTGTATTCCCTAAGTTAAGAAATTCTCTTGAGCATCCACCATATACTATGATACATGACTTTGGCTAAGCTCAAAAAGACTATCTCAATGATGGCCCTCCATGGATTCTCCACCTATATAAGCCACGGCTAAAGAAAAATTGCTTGGCCAAGTTGTCTTTTACCTTTGGCATGATGCAAAAAACATTTGATATTCTTTCTGTGTGAACCACTGCTACGAGTAATATGTTCTTAGAGATCATGTTTTCTTTTTGTTCTTCCTTTAATTTTCTATTTGAAGATTTGTCATCAGTTAGAGGTCATCGGTAGGATGATAGATGTTCTCAGCAACTTGTGTTGCCAGAATAATATGATTGCCAATGGAGTATTTTTAAGATTCTTGGAGATGTAAGAGTTGTTTCTGTCCATACATCACTCTTCTCATGTCACTAAGGTCATTGATTGTTTCCATGTGCTATATCGCAAATTGCTCACAATTTTAACTATGTGATCCAGAGGAATGTTTGACAAGGAAAGAATTGCAAAGTTGAAGAAGGGAGTTCTAATTGTAAACAATGCTCGAGGAGCAATTATGGACACTCAAGCAGTTGTTGATGCTTGTAACAGCGGTCATATTGCAGGTATTTTAACATAACTTGAACACATCATCCAGAGATGAGCCCTCAGCCTTAATATCAATTGAACACACCATTATATTTTTTTCTTCAATTCTTGCTTGTTTCTTTTCTTCAATATATTTTATCGACATTTGGAAGTAGTTCCATATCTTGTGGAATTGCCGAATCCTTTGAAGAAAGAAGTACTTCTAAAACTATATTGAGTTCTTTTCTTTCGGTTATTTCCCCCCAAATTTAGGATACAGTGGAGATGTTTGGTACCCACAACCAGCTCCCAAGGACCATCTATGGCGTTACATGCCAAACCAAGCTATGACTCCTCACATTTCTGGGACTACCATTGATGCACAGGTTTGTAAATACTCTGTTTCTCTAATTTCTTTAGGCTTTGCTTTTTCTTTACTTTCACGACATTATAATTGCGATTAAACTGAGAGAAGCTTGTTACTTTCAATTTCGCAGTTGAGGTATGCAGCTGGAACAAAGGATATGTTGGAC</genome_strand>
        <mrna_strand>GGGAGTGGAATGTTGCTGCAATTGCGCACAGAGCTTATGATTTGGAAGGCAAGACTGTTGGAACTGTTGGTGCAGGACGTATTGGCAGACTTTTACTCCAGCGATTGAAGCCATTTAACTGTAATCTACTTTACCATGACCGTCTTAAGATGGATTCTGAGCTAGAGAATCAAATTGGAGCAAAGTTTGAGGAAGATCTCGATAAGATGCTCTCGAAATGTGACATAGTGGTCATCAATACGCCTCTTACAGAGAAAACAAA.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGGAATGTTTGACAAGGAAAGAATTGCAAAGTTGAAGAAGGGAGTTCTAATTGTAAACAATGCTCGAGGAGCAATTATGGACACTCAAGCAGTTGTTGATGCTTGTAACAGCGGTCATATTGCAG...........................................................................................................................................................................................................................................GATACAGTGGAGATGTTTGGTACCCACAACCAGCTCCCAAGGACCATCTATGGCGTTACATGCCAAACCAAGCTATGACTCCTCACATTTCTGGGACTACCATTGATGCACAG...............................................................................................................TTGAGGTATGCAGCTGGAACAAAGGATATGTTGGAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0236E02-u8qcS/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E311228" ref_strand="+" ref_description="SGN-E311228 [cLEZ-16-B3]">
      <seq>tggaatgttgctgcaattgcgcacagagcttatgatttggaaggcaagactgttggaactgttggtgcaggacgtattggcagacttttactccagcgattgaagccatttaactgtaatctactttaccatgaccgtcttaagatggattctgagctagagaatcaaattggagcaaagtttgaggaagatctcgataagatgctctcgaaatgtgacatagtggtcatcaatacgcctcttacagagaaaacaaaaggaatgtttgacaaggaaagaattgcaaagttgaagaagggagttctaattgtaaacaatgctcgaggagcaattatggacactcaagcagttgttgatgcttgtaacagcggtcatattgcaggatacagtggagatgtttggtacccacaaccagctcccaaggaccatctatggcgttacatgccaaaccaagctatgactcctcacatttctgggactaccattgatgcacagttgaggtatgcagctggaacaaaggatatgttggacaggtacttcaagggtgaggatttccctgctgaaaattacattgtcaaggatggggaattggcacctcagtatcgctaaattatttatgtatagagttgtgtctagatttctgtgtt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0236E02-u8qcS/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0236E02.1" temp_strand="+" temp_description="C02HBa0236E02.1  AC215430.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0236E02 sequenced_by:kribb upload_account_name:korea">
        <position start="67749" stop="70082"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="68049" g_stop="68305" g_length="257"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="257" r_length="257" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="68306" i_stop="69046" i_length="741">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.768" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="69047" g_stop="69171" g_length="125"/>
          <reference_exon_boundary r_type="cDNA" r_start="258" r_stop="382" r_length="125" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="69172" i_stop="69406" i_length="235">
            <donor d_prob="0.983" d_score="1.00"/>
            <acceptor a_prob="0.964" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="69407" g_stop="69519" g_length="113"/>
          <reference_exon_boundary r_type="cDNA" r_start="383" r_stop="495" r_length="113" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="69520" i_stop="69630" i_length="111">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.989" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="69631" g_stop="69782" g_length="152"/>
          <reference_exon_boundary r_type="cDNA" r_start="496" r_stop="647" r_length="152" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0236E02.1" gen_strand="+" ref_id="SGN-E311228" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>647</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0236E02.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E311228" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="68049" e_stop="68305"/>
          <exon e_start="69047" e_stop="69171"/>
          <exon e_start="69407" e_stop="69519"/>
          <exon e_start="69631" e_stop="69782"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGGAATGTTGCTGCAATTGCGCACAGAGCTTATGATTTGGAAGGCAAGACTGTTGGAACTGTTGGTGCAGGACGTATTGGCAGACTTTTACTCCAGCGATTGAAGCCATTTAACTGTAATCTACTTTACCATGACCGTCTTAAGATGGATTCTGAGCTAGAGAATCAAATTGGAGCAAAGTTTGAGGAAGATCTCGATAAGATGCTCTCGAAATGTGACATAGTGGTCATCAATACGCCTCTTACAGAGAAAACAAAGTAAGGTTTCTGTTTCTGTAATTACCCGTCGTAAACCTATACAATAATATTTATTGACAAAGCTTCTTATATTCAAGTTATTTTAACAATGACTTAATTATGAAATGAACTAAGTAAGCTAAAGTGAATATTCATTGAGAATGAAATATGATATTTAGCGAAGGGAAGGAGAATCTTTGGTGTCATCGTAATTTTTTGGTATCACTCTAGATCATATATAAAGTAGTTGTATATTTAGATTCCCCGATTGTATTCCCTAAGTTAAGAAATTCTCTTGAGCATCCACCATATACTATGATACATGACTTTGGCTAAGCTCAAAAAGACTATCTCAATGATGGCCCTCCATGGATTCTCCACCTATATAAGCCACGGCTAAAGAAAAATTGCTTGGCCAAGTTGTCTTTTACCTTTGGCATGATGCAAAAAACATTTGATATTCTTTCTGTGTGAACCACTGCTACGAGTAATATGTTCTTAGAGATCATGTTTTCTTTTTGTTCTTCCTTTAATTTTCTATTTGAAGATTTGTCATCAGTTAGAGGTCATCGGTAGGATGATAGATGTTCTCAGCAACTTGTGTTGCCAGAATAATATGATTGCCAATGGAGTATTTTTAAGATTCTTGGAGATGTAAGAGTTGTTTCTGTCCATACATCACTCTTCTCATGTCACTAAGGTCATTGATTGTTTCCATGTGCTATATCGCAAATTGCTCACAATTTTAACTATGTGATCCAGAGGAATGTTTGACAAGGAAAGAATTGCAAAGTTGAAGAAGGGAGTTCTAATTGTAAACAATGCTCGAGGAGCAATTATGGACACTCAAGCAGTTGTTGATGCTTGTAACAGCGGTCATATTGCAGGTATTTTAACATAACTTGAACACATCATCCAGAGATGAGCCCTCAGCCTTAATATCAATTGAACACACCATTATATTTTTTTCTTCAATTCTTGCTTGTTTCTTTTCTTCAATATATTTTATCGACATTTGGAAGTAGTTCCATATCTTGTGGAATTGCCGAATCCTTTGAAGAAAGAAGTACTTCTAAAACTATATTGAGTTCTTTTCTTTCGGTTATTTCCCCCCAAATTTAGGATACAGTGGAGATGTTTGGTACCCACAACCAGCTCCCAAGGACCATCTATGGCGTTACATGCCAAACCAAGCTATGACTCCTCACATTTCTGGGACTACCATTGATGCACAGGTTTGTAAATACTCTGTTTCTCTAATTTCTTTAGGCTTTGCTTTTTCTTTACTTTCACGACATTATAATTGCGATTAAACTGAGAGAAGCTTGTTACTTTCAATTTCGCAGTTGAGGTATGCAGCTGGAACAAAGGATATGTTGGACAGGTACTTCAAGGGTGAGGATTTCCCTGCTGAAAATTACATTGTCAAGGATGGGGAATTGGCACCTCAGTATCGCTAAATTATTTATGTATAGAGTTGTGTCTAGATTTCTGTGTT</genome_strand>
        <mrna_strand>TGGAATGTTGCTGCAATTGCGCACAGAGCTTATGATTTGGAAGGCAAGACTGTTGGAACTGTTGGTGCAGGACGTATTGGCAGACTTTTACTCCAGCGATTGAAGCCATTTAACTGTAATCTACTTTACCATGACCGTCTTAAGATGGATTCTGAGCTAGAGAATCAAATTGGAGCAAAGTTTGAGGAAGATCTCGATAAGATGCTCTCGAAATGTGACATAGTGGTCATCAATACGCCTCTTACAGAGAAAACAAA.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGGAATGTTTGACAAGGAAAGAATTGCAAAGTTGAAGAAGGGAGTTCTAATTGTAAACAATGCTCGAGGAGCAATTATGGACACTCAAGCAGTTGTTGATGCTTGTAACAGCGGTCATATTGCAG...........................................................................................................................................................................................................................................GATACAGTGGAGATGTTTGGTACCCACAACCAGCTCCCAAGGACCATCTATGGCGTTACATGCCAAACCAAGCTATGACTCCTCACATTTCTGGGACTACCATTGATGCACAG...............................................................................................................TTGAGGTATGCAGCTGGAACAAAGGATATGTTGGACAGGTACTTCAAGGGTGAGGATTTCCCTGCTGAAAATTACATTGTCAAGGATGGGGAATTGGCACCTCAGTATCGCTAAATTATTTATGTATAGAGTTGTGTCTAGATTTCTGTGTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0236E02-u8qcS/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E276295" ref_strand="+" ref_description="SGN-E276295 [cLEN-21-M6]">
      <seq>aaggcaagactgttggaactgttggtgcaggacgtattggcagacttttactccagcgattgaagccatttaactgtaatctactttaccatgaccgtcttaagatggattctgagctagagaatcaaattggagcaaagtttgaggaagatctcgataagatgctctcgaaatgtgacatagtggtcatcaatacgcctcttacagagaaaacaaaaggaatgtttgacaaggaaagaattgcaaagttgaagaagggagttctaattgtaaacaatgctcgaggagcaattatggacactcaagcagttgttgatgcttgtaacagcggtcatattgcaggatacagtggagatgtttggtacccacaaccagctcccaaggaccatctatggcgttacatgccaaaccaagctatgactcctcacatttctgggactaccattgatgcacagttgaggtatgcagctggaacaaaggatatgttggacaggtacttcaagggtgaggatttccctgctgaaaattacattgtcaaggatggggaattggcacctcagtatcgctaaattatttatgtatagagttgtgtctagatttctgtgttaaataaactggcaagccgtgtctttaataagctgataaaattggctactttatgttcttct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0236E02-u8qcS/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0236E02.1" temp_strand="+" temp_description="C02HBa0236E02.1  AC215430.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0236E02 sequenced_by:kribb upload_account_name:korea">
        <position start="67789" stop="70143"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="68089" g_stop="68305" g_length="217"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="217" r_length="217" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="68306" i_stop="69046" i_length="741">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.768" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="69047" g_stop="69171" g_length="125"/>
          <reference_exon_boundary r_type="cDNA" r_start="218" r_stop="342" r_length="125" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="69172" i_stop="69406" i_length="235">
            <donor d_prob="0.983" d_score="1.00"/>
            <acceptor a_prob="0.964" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="69407" g_stop="69519" g_length="113"/>
          <reference_exon_boundary r_type="cDNA" r_start="343" r_stop="455" r_length="113" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="69520" i_stop="69630" i_length="111">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.989" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="69631" g_stop="69843" g_length="213"/>
          <reference_exon_boundary r_type="cDNA" r_start="456" r_stop="668" r_length="213" r_score="0.995"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0236E02.1" gen_strand="+" ref_id="SGN-E276295" ref_strand="+">
        <total_alignment_score>0.999</total_alignment_score>
        <cumulative_length_of_scored_exons>668</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0236E02.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E276295" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="68089" e_stop="68305"/>
          <exon e_start="69047" e_stop="69171"/>
          <exon e_start="69407" e_stop="69519"/>
          <exon e_start="69631" e_stop="69843"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAGGCAAGACTGTTGGAACTGTTGGTGCAGGACGTATTGGCAGACTTTTACTCCAGCGATTGAAGCCATTTAACTGTAATCTACTTTACCATGACCGTCTTAAGATGGATTCTGAGCTAGAGAATCAAATTGGAGCAAAGTTTGAGGAAGATCTCGATAAGATGCTCTCGAAATGTGACATAGTGGTCATCAATACGCCTCTTACAGAGAAAACAAAGTAAGGTTTCTGTTTCTGTAATTACCCGTCGTAAACCTATACAATAATATTTATTGACAAAGCTTCTTATATTCAAGTTATTTTAACAATGACTTAATTATGAAATGAACTAAGTAAGCTAAAGTGAATATTCATTGAGAATGAAATATGATATTTAGCGAAGGGAAGGAGAATCTTTGGTGTCATCGTAATTTTTTGGTATCACTCTAGATCATATATAAAGTAGTTGTATATTTAGATTCCCCGATTGTATTCCCTAAGTTAAGAAATTCTCTTGAGCATCCACCATATACTATGATACATGACTTTGGCTAAGCTCAAAAAGACTATCTCAATGATGGCCCTCCATGGATTCTCCACCTATATAAGCCACGGCTAAAGAAAAATTGCTTGGCCAAGTTGTCTTTTACCTTTGGCATGATGCAAAAAACATTTGATATTCTTTCTGTGTGAACCACTGCTACGAGTAATATGTTCTTAGAGATCATGTTTTCTTTTTGTTCTTCCTTTAATTTTCTATTTGAAGATTTGTCATCAGTTAGAGGTCATCGGTAGGATGATAGATGTTCTCAGCAACTTGTGTTGCCAGAATAATATGATTGCCAATGGAGTATTTTTAAGATTCTTGGAGATGTAAGAGTTGTTTCTGTCCATACATCACTCTTCTCATGTCACTAAGGTCATTGATTGTTTCCATGTGCTATATCGCAAATTGCTCACAATTTTAACTATGTGATCCAGAGGAATGTTTGACAAGGAAAGAATTGCAAAGTTGAAGAAGGGAGTTCTAATTGTAAACAATGCTCGAGGAGCAATTATGGACACTCAAGCAGTTGTTGATGCTTGTAACAGCGGTCATATTGCAGGTATTTTAACATAACTTGAACACATCATCCAGAGATGAGCCCTCAGCCTTAATATCAATTGAACACACCATTATATTTTTTTCTTCAATTCTTGCTTGTTTCTTTTCTTCAATATATTTTATCGACATTTGGAAGTAGTTCCATATCTTGTGGAATTGCCGAATCCTTTGAAGAAAGAAGTACTTCTAAAACTATATTGAGTTCTTTTCTTTCGGTTATTTCCCCCCAAATTTAGGATACAGTGGAGATGTTTGGTACCCACAACCAGCTCCCAAGGACCATCTATGGCGTTACATGCCAAACCAAGCTATGACTCCTCACATTTCTGGGACTACCATTGATGCACAGGTTTGTAAATACTCTGTTTCTCTAATTTCTTTAGGCTTTGCTTTTTCTTTACTTTCACGACATTATAATTGCGATTAAACTGAGAGAAGCTTGTTACTTTCAATTTCGCAGTTGAGGTATGCAGCTGGAACAAAGGATATGTTGGACAGGTACTTCAAGGGTGAGGATTTCCCTGCTGAAAATTACATTGTCAAGGATGGGGAATTGGCACCTCAGTATCGCTAAATTATTTATGTATAGAGTTGTGTCTAGATTTCTGTGTTAAATAAACTGGCAAGCCGTGTCTTCAATAAGCTGATAAAATTGGCTACTTTATGTTCTTCT</genome_strand>
        <mrna_strand>AAGGCAAGACTGTTGGAACTGTTGGTGCAGGACGTATTGGCAGACTTTTACTCCAGCGATTGAAGCCATTTAACTGTAATCTACTTTACCATGACCGTCTTAAGATGGATTCTGAGCTAGAGAATCAAATTGGAGCAAAGTTTGAGGAAGATCTCGATAAGATGCTCTCGAAATGTGACATAGTGGTCATCAATACGCCTCTTACAGAGAAAACAAA.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGGAATGTTTGACAAGGAAAGAATTGCAAAGTTGAAGAAGGGAGTTCTAATTGTAAACAATGCTCGAGGAGCAATTATGGACACTCAAGCAGTTGTTGATGCTTGTAACAGCGGTCATATTGCAG...........................................................................................................................................................................................................................................GATACAGTGGAGATGTTTGGTACCCACAACCAGCTCCCAAGGACCATCTATGGCGTTACATGCCAAACCAAGCTATGACTCCTCACATTTCTGGGACTACCATTGATGCACAG...............................................................................................................TTGAGGTATGCAGCTGGAACAAAGGATATGTTGGACAGGTACTTCAAGGGTGAGGATTTCCCTGCTGAAAATTACATTGTCAAGGATGGGGAATTGGCACCTCAGTATCGCTAAATTATTTATGTATAGAGTTGTGTCTAGATTTCTGTGTTAAATAAACTGGCAAGCCGTGTCTTTAATAAGCTGATAAAATTGGCTACTTTATGTTCTTCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0236E02-u8qcS/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E276289" ref_strand="+" ref_description="SGN-E276289 [cLEN-21-K6]">
      <seq>aaggcaagactgttggaactgttggtgcaggacgtattggcagacttttactccagcgattgaagccatttaactgtaatctactttaccatgaccgtcttaagatggattctgagctagagaatcaaattggagcaaagtttgaggaagatctcgataagatgctctcgaaatgtgacatagtggtcatcaatacgcctcttacagagaaaacaaaaggaatgtttgacaaggaaagaattgcaaagttgaagaagggagttctaattgtaaacaatgctcgaggagcaattatggacactcaagcagttgttgatgcttgtaacagcggtcatattgcaggatacagtggagatgtttggtacccacaaccagctcccaaggaccatctatggcgttacatgccaaaccaagctatgactcctcacatttctgggactaccattgatgcacagttgaggtatgcagctggaacaaaggatatgttggacaggtacttcaagggtgaggatttccctgctgaaaattacattgtcaaggatggggaattggcacctcagtatcgctaaattatttatgtatagag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0236E02-u8qcS/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0236E02.1" temp_strand="+" temp_description="C02HBa0236E02.1  AC215430.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0236E02 sequenced_by:kribb upload_account_name:korea">
        <position start="67789" stop="70061"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="68089" g_stop="68305" g_length="217"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="217" r_length="217" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="68306" i_stop="69046" i_length="741">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.768" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="69047" g_stop="69171" g_length="125"/>
          <reference_exon_boundary r_type="cDNA" r_start="218" r_stop="342" r_length="125" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="69172" i_stop="69406" i_length="235">
            <donor d_prob="0.983" d_score="1.00"/>
            <acceptor a_prob="0.964" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="69407" g_stop="69519" g_length="113"/>
          <reference_exon_boundary r_type="cDNA" r_start="343" r_stop="455" r_length="113" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="69520" i_stop="69630" i_length="111">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.989" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="69631" g_stop="69761" g_length="131"/>
          <reference_exon_boundary r_type="cDNA" r_start="456" r_stop="586" r_length="131" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0236E02.1" gen_strand="+" ref_id="SGN-E276289" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>586</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0236E02.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E276289" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="68089" e_stop="68305"/>
          <exon e_start="69047" e_stop="69171"/>
          <exon e_start="69407" e_stop="69519"/>
          <exon e_start="69631" e_stop="69761"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAGGCAAGACTGTTGGAACTGTTGGTGCAGGACGTATTGGCAGACTTTTACTCCAGCGATTGAAGCCATTTAACTGTAATCTACTTTACCATGACCGTCTTAAGATGGATTCTGAGCTAGAGAATCAAATTGGAGCAAAGTTTGAGGAAGATCTCGATAAGATGCTCTCGAAATGTGACATAGTGGTCATCAATACGCCTCTTACAGAGAAAACAAAGTAAGGTTTCTGTTTCTGTAATTACCCGTCGTAAACCTATACAATAATATTTATTGACAAAGCTTCTTATATTCAAGTTATTTTAACAATGACTTAATTATGAAATGAACTAAGTAAGCTAAAGTGAATATTCATTGAGAATGAAATATGATATTTAGCGAAGGGAAGGAGAATCTTTGGTGTCATCGTAATTTTTTGGTATCACTCTAGATCATATATAAAGTAGTTGTATATTTAGATTCCCCGATTGTATTCCCTAAGTTAAGAAATTCTCTTGAGCATCCACCATATACTATGATACATGACTTTGGCTAAGCTCAAAAAGACTATCTCAATGATGGCCCTCCATGGATTCTCCACCTATATAAGCCACGGCTAAAGAAAAATTGCTTGGCCAAGTTGTCTTTTACCTTTGGCATGATGCAAAAAACATTTGATATTCTTTCTGTGTGAACCACTGCTACGAGTAATATGTTCTTAGAGATCATGTTTTCTTTTTGTTCTTCCTTTAATTTTCTATTTGAAGATTTGTCATCAGTTAGAGGTCATCGGTAGGATGATAGATGTTCTCAGCAACTTGTGTTGCCAGAATAATATGATTGCCAATGGAGTATTTTTAAGATTCTTGGAGATGTAAGAGTTGTTTCTGTCCATACATCACTCTTCTCATGTCACTAAGGTCATTGATTGTTTCCATGTGCTATATCGCAAATTGCTCACAATTTTAACTATGTGATCCAGAGGAATGTTTGACAAGGAAAGAATTGCAAAGTTGAAGAAGGGAGTTCTAATTGTAAACAATGCTCGAGGAGCAATTATGGACACTCAAGCAGTTGTTGATGCTTGTAACAGCGGTCATATTGCAGGTATTTTAACATAACTTGAACACATCATCCAGAGATGAGCCCTCAGCCTTAATATCAATTGAACACACCATTATATTTTTTTCTTCAATTCTTGCTTGTTTCTTTTCTTCAATATATTTTATCGACATTTGGAAGTAGTTCCATATCTTGTGGAATTGCCGAATCCTTTGAAGAAAGAAGTACTTCTAAAACTATATTGAGTTCTTTTCTTTCGGTTATTTCCCCCCAAATTTAGGATACAGTGGAGATGTTTGGTACCCACAACCAGCTCCCAAGGACCATCTATGGCGTTACATGCCAAACCAAGCTATGACTCCTCACATTTCTGGGACTACCATTGATGCACAGGTTTGTAAATACTCTGTTTCTCTAATTTCTTTAGGCTTTGCTTTTTCTTTACTTTCACGACATTATAATTGCGATTAAACTGAGAGAAGCTTGTTACTTTCAATTTCGCAGTTGAGGTATGCAGCTGGAACAAAGGATATGTTGGACAGGTACTTCAAGGGTGAGGATTTCCCTGCTGAAAATTACATTGTCAAGGATGGGGAATTGGCACCTCAGTATCGCTAAATTATTTATGTATAGAG</genome_strand>
        <mrna_strand>AAGGCAAGACTGTTGGAACTGTTGGTGCAGGACGTATTGGCAGACTTTTACTCCAGCGATTGAAGCCATTTAACTGTAATCTACTTTACCATGACCGTCTTAAGATGGATTCTGAGCTAGAGAATCAAATTGGAGCAAAGTTTGAGGAAGATCTCGATAAGATGCTCTCGAAATGTGACATAGTGGTCATCAATACGCCTCTTACAGAGAAAACAAA.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGGAATGTTTGACAAGGAAAGAATTGCAAAGTTGAAGAAGGGAGTTCTAATTGTAAACAATGCTCGAGGAGCAATTATGGACACTCAAGCAGTTGTTGATGCTTGTAACAGCGGTCATATTGCAG...........................................................................................................................................................................................................................................GATACAGTGGAGATGTTTGGTACCCACAACCAGCTCCCAAGGACCATCTATGGCGTTACATGCCAAACCAAGCTATGACTCCTCACATTTCTGGGACTACCATTGATGCACAG...............................................................................................................TTGAGGTATGCAGCTGGAACAAAGGATATGTTGGACAGGTACTTCAAGGGTGAGGATTTCCCTGCTGAAAATTACATTGTCAAGGATGGGGAATTGGCACCTCAGTATCGCTAAATTATTTATGTATAGAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0236E02-u8qcS/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E336433" ref_strand="+" ref_description="SGN-E336433 [cTOE-4-O7]">
      <seq>ttggaactgttggtgcaggacgtattggcagacttttactccagcgattgaagccatttaactgtaatctactttaccatgaccgtcttaagatggattctgagctagagaatcaaattggagcaaagtttgaggaagatctcgataagatgctctcgaaatgtgacatagtggtcatcaatacgcctcttacagagaaaacaaaaggaatgtttgacaaggaaagaattgcaaagttgaagaagggagttctaattgtaaacaatgctcgaggagcaattatggacactcaagcagttgttgatgcttgtaacagcggtcatattgcaggatacagtggagatgtttggtacccacaaccagctcccaaggaccatctatggcgttacatgccaaaccaagctatgactcctcacatttctgggactaccattgatgcacagttgaggtatgcagctggaacaaaggatatgttggac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0236E02-u8qcS/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0236E02.1" temp_strand="+" temp_description="C02HBa0236E02.1  AC215430.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0236E02 sequenced_by:kribb upload_account_name:korea">
        <position start="67801" stop="69966"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="68101" g_stop="68305" g_length="205"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="205" r_length="205" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="68306" i_stop="69046" i_length="741">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.768" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="69047" g_stop="69171" g_length="125"/>
          <reference_exon_boundary r_type="cDNA" r_start="206" r_stop="330" r_length="125" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="69172" i_stop="69406" i_length="235">
            <donor d_prob="0.983" d_score="1.00"/>
            <acceptor a_prob="0.964" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="69407" g_stop="69519" g_length="113"/>
          <reference_exon_boundary r_type="cDNA" r_start="331" r_stop="443" r_length="113" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="69520" i_stop="69630" i_length="111">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.989" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="69631" g_stop="69666" g_length="36"/>
          <reference_exon_boundary r_type="cDNA" r_start="444" r_stop="479" r_length="36" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0236E02.1" gen_strand="+" ref_id="SGN-E336433" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>479</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0236E02.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E336433" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="68101" e_stop="68305"/>
          <exon e_start="69047" e_stop="69171"/>
          <exon e_start="69407" e_stop="69519"/>
          <exon e_start="69631" e_stop="69666"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTGGAACTGTTGGTGCAGGACGTATTGGCAGACTTTTACTCCAGCGATTGAAGCCATTTAACTGTAATCTACTTTACCATGACCGTCTTAAGATGGATTCTGAGCTAGAGAATCAAATTGGAGCAAAGTTTGAGGAAGATCTCGATAAGATGCTCTCGAAATGTGACATAGTGGTCATCAATACGCCTCTTACAGAGAAAACAAAGTAAGGTTTCTGTTTCTGTAATTACCCGTCGTAAACCTATACAATAATATTTATTGACAAAGCTTCTTATATTCAAGTTATTTTAACAATGACTTAATTATGAAATGAACTAAGTAAGCTAAAGTGAATATTCATTGAGAATGAAATATGATATTTAGCGAAGGGAAGGAGAATCTTTGGTGTCATCGTAATTTTTTGGTATCACTCTAGATCATATATAAAGTAGTTGTATATTTAGATTCCCCGATTGTATTCCCTAAGTTAAGAAATTCTCTTGAGCATCCACCATATACTATGATACATGACTTTGGCTAAGCTCAAAAAGACTATCTCAATGATGGCCCTCCATGGATTCTCCACCTATATAAGCCACGGCTAAAGAAAAATTGCTTGGCCAAGTTGTCTTTTACCTTTGGCATGATGCAAAAAACATTTGATATTCTTTCTGTGTGAACCACTGCTACGAGTAATATGTTCTTAGAGATCATGTTTTCTTTTTGTTCTTCCTTTAATTTTCTATTTGAAGATTTGTCATCAGTTAGAGGTCATCGGTAGGATGATAGATGTTCTCAGCAACTTGTGTTGCCAGAATAATATGATTGCCAATGGAGTATTTTTAAGATTCTTGGAGATGTAAGAGTTGTTTCTGTCCATACATCACTCTTCTCATGTCACTAAGGTCATTGATTGTTTCCATGTGCTATATCGCAAATTGCTCACAATTTTAACTATGTGATCCAGAGGAATGTTTGACAAGGAAAGAATTGCAAAGTTGAAGAAGGGAGTTCTAATTGTAAACAATGCTCGAGGAGCAATTATGGACACTCAAGCAGTTGTTGATGCTTGTAACAGCGGTCATATTGCAGGTATTTTAACATAACTTGAACACATCATCCAGAGATGAGCCCTCAGCCTTAATATCAATTGAACACACCATTATATTTTTTTCTTCAATTCTTGCTTGTTTCTTTTCTTCAATATATTTTATCGACATTTGGAAGTAGTTCCATATCTTGTGGAATTGCCGAATCCTTTGAAGAAAGAAGTACTTCTAAAACTATATTGAGTTCTTTTCTTTCGGTTATTTCCCCCCAAATTTAGGATACAGTGGAGATGTTTGGTACCCACAACCAGCTCCCAAGGACCATCTATGGCGTTACATGCCAAACCAAGCTATGACTCCTCACATTTCTGGGACTACCATTGATGCACAGGTTTGTAAATACTCTGTTTCTCTAATTTCTTTAGGCTTTGCTTTTTCTTTACTTTCACGACATTATAATTGCGATTAAACTGAGAGAAGCTTGTTACTTTCAATTTCGCAGTTGAGGTATGCAGCTGGAACAAAGGATATGTTGGAC</genome_strand>
        <mrna_strand>TTGGAACTGTTGGTGCAGGACGTATTGGCAGACTTTTACTCCAGCGATTGAAGCCATTTAACTGTAATCTACTTTACCATGACCGTCTTAAGATGGATTCTGAGCTAGAGAATCAAATTGGAGCAAAGTTTGAGGAAGATCTCGATAAGATGCTCTCGAAATGTGACATAGTGGTCATCAATACGCCTCTTACAGAGAAAACAAA.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGGAATGTTTGACAAGGAAAGAATTGCAAAGTTGAAGAAGGGAGTTCTAATTGTAAACAATGCTCGAGGAGCAATTATGGACACTCAAGCAGTTGTTGATGCTTGTAACAGCGGTCATATTGCAG...........................................................................................................................................................................................................................................GATACAGTGGAGATGTTTGGTACCCACAACCAGCTCCCAAGGACCATCTATGGCGTTACATGCCAAACCAAGCTATGACTCCTCACATTTCTGGGACTACCATTGATGCACAG...............................................................................................................TTGAGGTATGCAGCTGGAACAAAGGATATGTTGGAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0236E02-u8qcS/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E247482" ref_strand="+" ref_description="SGN-E247482 [cLEF-42-A11]">
      <seq>ggaactgttggtgcaggacgtattggcagacttttactccagcgattgaagccatttaactctaatctactttaccatgaccgtcttaagatggattctgagctagagaatcaaattggagcaaagtttgaggaagatctcgataagatgctctcgaaatgtgacatagtggtcatcaatacgcctcttacagagaaaacaaaaggaatgtttgacaaggaaagaattgcaaagttgaagaagggagttctaattgtaaacaatgctcgaggagcaattatggacactcaaacagttgttgatgcttgtaacagcggtcatattg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0236E02-u8qcS/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0236E02.1" temp_strand="+" temp_description="C02HBa0236E02.1  AC215430.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0236E02 sequenced_by:kribb upload_account_name:korea">
        <position start="67803" stop="69468"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="68103" g_stop="68305" g_length="203"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="203" r_length="203" r_score="0.995"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="68306" i_stop="69046" i_length="741">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.768" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="69047" g_stop="69168" g_length="122"/>
          <reference_exon_boundary r_type="cDNA" r_start="204" r_stop="325" r_length="122" r_score="0.992"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0236E02.1" gen_strand="+" ref_id="SGN-E247482" ref_strand="+">
        <total_alignment_score>0.994</total_alignment_score>
        <cumulative_length_of_scored_exons>325</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0236E02.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E247482" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="68103" e_stop="68305"/>
          <exon e_start="69047" e_stop="69168"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGAACTGTTGGTGCAGGACGTATTGGCAGACTTTTACTCCAGCGATTGAAGCCATTTAACTGTAATCTACTTTACCATGACCGTCTTAAGATGGATTCTGAGCTAGAGAATCAAATTGGAGCAAAGTTTGAGGAAGATCTCGATAAGATGCTCTCGAAATGTGACATAGTGGTCATCAATACGCCTCTTACAGAGAAAACAAAGTAAGGTTTCTGTTTCTGTAATTACCCGTCGTAAACCTATACAATAATATTTATTGACAAAGCTTCTTATATTCAAGTTATTTTAACAATGACTTAATTATGAAATGAACTAAGTAAGCTAAAGTGAATATTCATTGAGAATGAAATATGATATTTAGCGAAGGGAAGGAGAATCTTTGGTGTCATCGTAATTTTTTGGTATCACTCTAGATCATATATAAAGTAGTTGTATATTTAGATTCCCCGATTGTATTCCCTAAGTTAAGAAATTCTCTTGAGCATCCACCATATACTATGATACATGACTTTGGCTAAGCTCAAAAAGACTATCTCAATGATGGCCCTCCATGGATTCTCCACCTATATAAGCCACGGCTAAAGAAAAATTGCTTGGCCAAGTTGTCTTTTACCTTTGGCATGATGCAAAAAACATTTGATATTCTTTCTGTGTGAACCACTGCTACGAGTAATATGTTCTTAGAGATCATGTTTTCTTTTTGTTCTTCCTTTAATTTTCTATTTGAAGATTTGTCATCAGTTAGAGGTCATCGGTAGGATGATAGATGTTCTCAGCAACTTGTGTTGCCAGAATAATATGATTGCCAATGGAGTATTTTTAAGATTCTTGGAGATGTAAGAGTTGTTTCTGTCCATACATCACTCTTCTCATGTCACTAAGGTCATTGATTGTTTCCATGTGCTATATCGCAAATTGCTCACAATTTTAACTATGTGATCCAGAGGAATGTTTGACAAGGAAAGAATTGCAAAGTTGAAGAAGGGAGTTCTAATTGTAAACAATGCTCGAGGAGCAATTATGGACACTCAAGCAGTTGTTGATGCTTGTAACAGCGGTCATATTG</genome_strand>
        <mrna_strand>GGAACTGTTGGTGCAGGACGTATTGGCAGACTTTTACTCCAGCGATTGAAGCCATTTAACTCTAATCTACTTTACCATGACCGTCTTAAGATGGATTCTGAGCTAGAGAATCAAATTGGAGCAAAGTTTGAGGAAGATCTCGATAAGATGCTCTCGAAATGTGACATAGTGGTCATCAATACGCCTCTTACAGAGAAAACAAA.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGGAATGTTTGACAAGGAAAGAATTGCAAAGTTGAAGAAGGGAGTTCTAATTGTAAACAATGCTCGAGGAGCAATTATGGACACTCAAACAGTTGTTGATGCTTGTAACAGCGGTCATATTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0236E02-u8qcS/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E262678" ref_strand="+" ref_description="SGN-E262678 [cLEG-63-I1]">
      <seq>tgaagccatttaactgtaatctactttaccatgaccgtcttaagatggattctgagctagagaatcaaattggagcaaagtttgaggaagatctcgataagatgctctcgaaatgtgacatagtggtcatcaatacgcctcttacagagaaaacaaaaggaatgtttgacaaggaaagaattgcaaagttgaagaagggagttctaattgtaaacaatgctcgaggagcaattatggacactcaagcagttgttgatgcttgtaacagcggtcatattgcaggtattttaacataacttgaacacatcatccagagatgagccctcagccttaatatcaattgaacacaccattatatttttttcttcaattcttgcttgtttcttttcttcaatatattttatcgacatttgggaggtagttccatatcttgtgggattg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0236E02-u8qcS/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0236E02.1" temp_strand="+" temp_description="C02HBa0236E02.1  AC215430.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0236E02 sequenced_by:kribb upload_account_name:korea">
        <position start="67849" stop="69629"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="68149" g_stop="68305" g_length="157"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="157" r_length="157" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="68306" i_stop="69046" i_length="741">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.768" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="69047" g_stop="69329" g_length="283"/>
          <reference_exon_boundary r_type="cDNA" r_start="158" r_stop="441" r_length="284" r_score="0.986"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0236E02.1" gen_strand="+" ref_id="SGN-E262678" ref_strand="+">
        <total_alignment_score>0.991</total_alignment_score>
        <cumulative_length_of_scored_exons>440</cumulative_length_of_scored_exons>
        <coverage percentage="0.998" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0236E02.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E262678" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="68149" e_stop="68305"/>
          <exon e_start="69047" e_stop="69329"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGAAGCCATTTAACTGTAATCTACTTTACCATGACCGTCTTAAGATGGATTCTGAGCTAGAGAATCAAATTGGAGCAAAGTTTGAGGAAGATCTCGATAAGATGCTCTCGAAATGTGACATAGTGGTCATCAATACGCCTCTTACAGAGAAAACAAAGTAAGGTTTCTGTTTCTGTAATTACCCGTCGTAAACCTATACAATAATATTTATTGACAAAGCTTCTTATATTCAAGTTATTTTAACAATGACTTAATTATGAAATGAACTAAGTAAGCTAAAGTGAATATTCATTGAGAATGAAATATGATATTTAGCGAAGGGAAGGAGAATCTTTGGTGTCATCGTAATTTTTTGGTATCACTCTAGATCATATATAAAGTAGTTGTATATTTAGATTCCCCGATTGTATTCCCTAAGTTAAGAAATTCTCTTGAGCATCCACCATATACTATGATACATGACTTTGGCTAAGCTCAAAAAGACTATCTCAATGATGGCCCTCCATGGATTCTCCACCTATATAAGCCACGGCTAAAGAAAAATTGCTTGGCCAAGTTGTCTTTTACCTTTGGCATGATGCAAAAAACATTTGATATTCTTTCTGTGTGAACCACTGCTACGAGTAATATGTTCTTAGAGATCATGTTTTCTTTTTGTTCTTCCTTTAATTTTCTATTTGAAGATTTGTCATCAGTTAGAGGTCATCGGTAGGATGATAGATGTTCTCAGCAACTTGTGTTGCCAGAATAATATGATTGCCAATGGAGTATTTTTAAGATTCTTGGAGATGTAAGAGTTGTTTCTGTCCATACATCACTCTTCTCATGTCACTAAGGTCATTGATTGTTTCCATGTGCTATATCGCAAATTGCTCACAATTTTAACTATGTGATCCAGAGGAATGTTTGACAAGGAAAGAATTGCAAAGTTGAAGAAGGGAGTTCTAATTGTAAACAATGCTCGAGGAGCAATTATGGACACTCAAGCAGTTGTTGATGCTTGTAACAGCGGTCATATTGCAGGTATTTTAACATAACTTGAACACATCATCCAGAGATGAGCCCTCAGCCTTAATATCAATTGAACACACCATTATATTTTTTTCTTCAATTCTTGCTTGTTTCTTTTCTTCAATATATTTTATCGACATTT-GGAAGTAGTTCCATATCTTGTGGAATTG</genome_strand>
        <mrna_strand>TGAAGCCATTTAACTGTAATCTACTTTACCATGACCGTCTTAAGATGGATTCTGAGCTAGAGAATCAAATTGGAGCAAAGTTTGAGGAAGATCTCGATAAGATGCTCTCGAAATGTGACATAGTGGTCATCAATACGCCTCTTACAGAGAAAACAAA.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGGAATGTTTGACAAGGAAAGAATTGCAAAGTTGAAGAAGGGAGTTCTAATTGTAAACAATGCTCGAGGAGCAATTATGGACACTCAAGCAGTTGTTGATGCTTGTAACAGCGGTCATATTGCAGGTATTTTAACATAACTTGAACACATCATCCAGAGATGAGCCCTCAGCCTTAATATCAATTGAACACACCATTATATTTTTTTCTTCAATTCTTGCTTGTTTCTTTTCTTCAATATATTTTATCGACATTTGGGAGGTAGTTCCATATCTTGTGGGATTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0236E02-u8qcS/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E268988" ref_strand="+" ref_description="SGN-E268988 [cLEI-16-E2]">
      <seq>gctactttaccatgaccgtcttaagatggattctgagctagagaatcaaattggagcaaagtttgaggaagatctcgataagatgctctcgaaatgtgacatagtggtcatcaatacgcctcttacagagaaaacaaaaggaatgtttgacaaggaaagaattgcaaagttgaagaaaggagttctaattgtaaacaatgctcgaggagcaattatggacactcaagcagttgttgatgcttgtaacagcggtcatattgcaggatacagtggagatgtttggtacccacaaccagctcccaaggaccatctatggcgttacatgccaaaccaagctatgactcctcacatttctgggactaccattgatgcacagttgaggtatgcagctggaacaaaggatatgttggacaggtacttcaagggtgaggatttccctgctgaaaattacattgtcaaggatggggaattggcacctcagtatcgctaaattatttatgtatagagttgtgtctagatttctgtgttaaataaactggcaagccgtgtcttcaataagctgataaaat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0236E02-u8qcS/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0236E02.1" temp_strand="+" temp_description="C02HBa0236E02.1  AC215430.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0236E02 sequenced_by:kribb upload_account_name:korea">
        <position start="67869" stop="70123"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="68168" g_stop="68305" g_length="138"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="138" r_length="138" r_score="0.993"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="68306" i_stop="69046" i_length="741">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.768" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="69047" g_stop="69171" g_length="125"/>
          <reference_exon_boundary r_type="cDNA" r_start="139" r_stop="263" r_length="125" r_score="0.992"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="69172" i_stop="69406" i_length="235">
            <donor d_prob="0.983" d_score="1.00"/>
            <acceptor a_prob="0.964" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="69407" g_stop="69519" g_length="113"/>
          <reference_exon_boundary r_type="cDNA" r_start="264" r_stop="376" r_length="113" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="69520" i_stop="69630" i_length="111">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.989" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="69631" g_stop="69823" g_length="193"/>
          <reference_exon_boundary r_type="cDNA" r_start="377" r_stop="569" r_length="193" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0236E02.1" gen_strand="+" ref_id="SGN-E268988" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>569</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0236E02.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E268988" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="68168" e_stop="68305"/>
          <exon e_start="69047" e_stop="69171"/>
          <exon e_start="69407" e_stop="69519"/>
          <exon e_start="69631" e_stop="69823"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCTACTTTACCATGACCGTCTTAAGATGGATTCTGAGCTAGAGAATCAAATTGGAGCAAAGTTTGAGGAAGATCTCGATAAGATGCTCTCGAAATGTGACATAGTGGTCATCAATACGCCTCTTACAGAGAAAACAAAGTAAGGTTTCTGTTTCTGTAATTACCCGTCGTAAACCTATACAATAATATTTATTGACAAAGCTTCTTATATTCAAGTTATTTTAACAATGACTTAATTATGAAATGAACTAAGTAAGCTAAAGTGAATATTCATTGAGAATGAAATATGATATTTAGCGAAGGGAAGGAGAATCTTTGGTGTCATCGTAATTTTTTGGTATCACTCTAGATCATATATAAAGTAGTTGTATATTTAGATTCCCCGATTGTATTCCCTAAGTTAAGAAATTCTCTTGAGCATCCACCATATACTATGATACATGACTTTGGCTAAGCTCAAAAAGACTATCTCAATGATGGCCCTCCATGGATTCTCCACCTATATAAGCCACGGCTAAAGAAAAATTGCTTGGCCAAGTTGTCTTTTACCTTTGGCATGATGCAAAAAACATTTGATATTCTTTCTGTGTGAACCACTGCTACGAGTAATATGTTCTTAGAGATCATGTTTTCTTTTTGTTCTTCCTTTAATTTTCTATTTGAAGATTTGTCATCAGTTAGAGGTCATCGGTAGGATGATAGATGTTCTCAGCAACTTGTGTTGCCAGAATAATATGATTGCCAATGGAGTATTTTTAAGATTCTTGGAGATGTAAGAGTTGTTTCTGTCCATACATCACTCTTCTCATGTCACTAAGGTCATTGATTGTTTCCATGTGCTATATCGCAAATTGCTCACAATTTTAACTATGTGATCCAGAGGAATGTTTGACAAGGAAAGAATTGCAAAGTTGAAGAAGGGAGTTCTAATTGTAAACAATGCTCGAGGAGCAATTATGGACACTCAAGCAGTTGTTGATGCTTGTAACAGCGGTCATATTGCAGGTATTTTAACATAACTTGAACACATCATCCAGAGATGAGCCCTCAGCCTTAATATCAATTGAACACACCATTATATTTTTTTCTTCAATTCTTGCTTGTTTCTTTTCTTCAATATATTTTATCGACATTTGGAAGTAGTTCCATATCTTGTGGAATTGCCGAATCCTTTGAAGAAAGAAGTACTTCTAAAACTATATTGAGTTCTTTTCTTTCGGTTATTTCCCCCCAAATTTAGGATACAGTGGAGATGTTTGGTACCCACAACCAGCTCCCAAGGACCATCTATGGCGTTACATGCCAAACCAAGCTATGACTCCTCACATTTCTGGGACTACCATTGATGCACAGGTTTGTAAATACTCTGTTTCTCTAATTTCTTTAGGCTTTGCTTTTTCTTTACTTTCACGACATTATAATTGCGATTAAACTGAGAGAAGCTTGTTACTTTCAATTTCGCAGTTGAGGTATGCAGCTGGAACAAAGGATATGTTGGACAGGTACTTCAAGGGTGAGGATTTCCCTGCTGAAAATTACATTGTCAAGGATGGGGAATTGGCACCTCAGTATCGCTAAATTATTTATGTATAGAGTTGTGTCTAGATTTCTGTGTTAAATAAACTGGCAAGCCGTGTCTTCAATAAGCTGATAAAAT</genome_strand>
        <mrna_strand>GCTACTTTACCATGACCGTCTTAAGATGGATTCTGAGCTAGAGAATCAAATTGGAGCAAAGTTTGAGGAAGATCTCGATAAGATGCTCTCGAAATGTGACATAGTGGTCATCAATACGCCTCTTACAGAGAAAACAAA.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGGAATGTTTGACAAGGAAAGAATTGCAAAGTTGAAGAAAGGAGTTCTAATTGTAAACAATGCTCGAGGAGCAATTATGGACACTCAAGCAGTTGTTGATGCTTGTAACAGCGGTCATATTGCAG...........................................................................................................................................................................................................................................GATACAGTGGAGATGTTTGGTACCCACAACCAGCTCCCAAGGACCATCTATGGCGTTACATGCCAAACCAAGCTATGACTCCTCACATTTCTGGGACTACCATTGATGCACAG...............................................................................................................TTGAGGTATGCAGCTGGAACAAAGGATATGTTGGACAGGTACTTCAAGGGTGAGGATTTCCCTGCTGAAAATTACATTGTCAAGGATGGGGAATTGGCACCTCAGTATCGCTAAATTATTTATGTATAGAGTTGTGTCTAGATTTCTGTGTTAAATAAACTGGCAAGCCGTGTCTTCAATAAGCTGATAAAAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0236E02-u8qcS/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E353122" ref_strand="+" ref_description="SGN-E353122 [cTOS-14-A21]">
      <seq>gaagatctcgataagatgctctcgaaatgtgacatagaggtcatcaatacgcctcttacagagaaaacaaaaggaatgtttgacaaggaaagaattgcaaagttgaagaagggagttctaattgtaaacaatgctcgaggagcaattatggacactcaagcagttgttgatgcttgtaacagcggtcatattgcaggatacagtggagatgtttggtacccacaaccagctcccaaggaccatctatggcgttacatgccaaaccaagctatgactcctcacatttctgggactaccattgatgcacagttgaggtatgcagctggaacaaaggatatgttggacaggtacttcaagggtgaggatttccctgctgaaaattacattgtcaaggatggggaattggcacctcagtatcgctaaattatttatgtatagagttgtgtctagatttctgtgttaaataaactggcaagccgtgtcttcaataagctgataaaattggctactttatgttcttctagaactctaatgcagtttttctccgggttagctgtaacttttgtgatggaaacatatgtcctcttctgtgatggaggtctatgtatgatcctccagtgtctttcttgagtctataactgaacttccttgctgtggtagttgtactggtgttcctggacattttatgttttaaaaaattatcttcttgtttgctagtaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0236E02-u8qcS/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0236E02.1" temp_strand="+" temp_description="C02HBa0236E02.1  AC215430.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0236E02 sequenced_by:kribb upload_account_name:korea">
        <position start="67935" stop="70342"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="68235" g_stop="68305" g_length="71"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="71" r_length="71" r_score="0.986"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="68306" i_stop="69046" i_length="741">
            <donor d_prob="0.995" d_score="0.98"/>
            <acceptor a_prob="0.768" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="69047" g_stop="69171" g_length="125"/>
          <reference_exon_boundary r_type="cDNA" r_start="72" r_stop="196" r_length="125" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="69172" i_stop="69406" i_length="235">
            <donor d_prob="0.983" d_score="1.00"/>
            <acceptor a_prob="0.964" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="69407" g_stop="69519" g_length="113"/>
          <reference_exon_boundary r_type="cDNA" r_start="197" r_stop="309" r_length="113" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="69520" i_stop="69630" i_length="111">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.989" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="69631" g_stop="70041" g_length="411"/>
          <reference_exon_boundary r_type="cDNA" r_start="310" r_stop="718" r_length="409" r_score="0.995"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="719" polyA_stop="730"/>
      <MATCH_line gen_id="C02HBa0236E02.1" gen_strand="+" ref_id="SGN-E353122" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>720</cumulative_length_of_scored_exons>
        <coverage percentage="0.986" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0236E02.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E353122" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="68235" e_stop="68305"/>
          <exon e_start="69047" e_stop="69171"/>
          <exon e_start="69407" e_stop="69519"/>
          <exon e_start="69631" e_stop="70041"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAAGATCTCGATAAGATGCTCTCGAAATGTGACATAGTGGTCATCAATACGCCTCTTACAGAGAAAACAAAGTAAGGTTTCTGTTTCTGTAATTACCCGTCGTAAACCTATACAATAATATTTATTGACAAAGCTTCTTATATTCAAGTTATTTTAACAATGACTTAATTATGAAATGAACTAAGTAAGCTAAAGTGAATATTCATTGAGAATGAAATATGATATTTAGCGAAGGGAAGGAGAATCTTTGGTGTCATCGTAATTTTTTGGTATCACTCTAGATCATATATAAAGTAGTTGTATATTTAGATTCCCCGATTGTATTCCCTAAGTTAAGAAATTCTCTTGAGCATCCACCATATACTATGATACATGACTTTGGCTAAGCTCAAAAAGACTATCTCAATGATGGCCCTCCATGGATTCTCCACCTATATAAGCCACGGCTAAAGAAAAATTGCTTGGCCAAGTTGTCTTTTACCTTTGGCATGATGCAAAAAACATTTGATATTCTTTCTGTGTGAACCACTGCTACGAGTAATATGTTCTTAGAGATCATGTTTTCTTTTTGTTCTTCCTTTAATTTTCTATTTGAAGATTTGTCATCAGTTAGAGGTCATCGGTAGGATGATAGATGTTCTCAGCAACTTGTGTTGCCAGAATAATATGATTGCCAATGGAGTATTTTTAAGATTCTTGGAGATGTAAGAGTTGTTTCTGTCCATACATCACTCTTCTCATGTCACTAAGGTCATTGATTGTTTCCATGTGCTATATCGCAAATTGCTCACAATTTTAACTATGTGATCCAGAGGAATGTTTGACAAGGAAAGAATTGCAAAGTTGAAGAAGGGAGTTCTAATTGTAAACAATGCTCGAGGAGCAATTATGGACACTCAAGCAGTTGTTGATGCTTGTAACAGCGGTCATATTGCAGGTATTTTAACATAACTTGAACACATCATCCAGAGATGAGCCCTCAGCCTTAATATCAATTGAACACACCATTATATTTTTTTCTTCAATTCTTGCTTGTTTCTTTTCTTCAATATATTTTATCGACATTTGGAAGTAGTTCCATATCTTGTGGAATTGCCGAATCCTTTGAAGAAAGAAGTACTTCTAAAACTATATTGAGTTCTTTTCTTTCGGTTATTTCCCCCCAAATTTAGGATACAGTGGAGATGTTTGGTACCCACAACCAGCTCCCAAGGACCATCTATGGCGTTACATGCCAAACCAAGCTATGACTCCTCACATTTCTGGGACTACCATTGATGCACAGGTTTGTAAATACTCTGTTTCTCTAATTTCTTTAGGCTTTGCTTTTTCTTTACTTTCACGACATTATAATTGCGATTAAACTGAGAGAAGCTTGTTACTTTCAATTTCGCAGTTGAGGTATGCAGCTGGAACAAAGGATATGTTGGACAGGTACTTCAAGGGTGAGGATTTCCCTGCTGAAAATTACATTGTCAAGGATGGGGAATTGGCACCTCAGTATCGCTAAATTATTTATGTATAGAGTTGTGTCTAGATTTCTGTGTTAAATAAACTGGCAAGCCGTGTCTTCAATAAGCTGATAAAATTGGCTACTTTATGTTCTTCTAGAACTCTAATGCAGTTTTTCTCCGGGTTAGCTGTAACTTTTGTGATGGAAACATATGTCCTCTTCTGTGATGGAGGTCTATGTATGATCCTCCAGTGTCTTTCTTGAGTCTATAACTGAACTTCCTTGCTGTGGTAGTTGTACTGGTGTTCCTGGACATTTTATGTTTTAAAAAAAATTATCTTCTTGTTTGCTAGT</genome_strand>
        <mrna_strand>GAAGATCTCGATAAGATGCTCTCGAAATGTGACATAGAGGTCATCAATACGCCTCTTACAGAGAAAACAAA.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGGAATGTTTGACAAGGAAAGAATTGCAAAGTTGAAGAAGGGAGTTCTAATTGTAAACAATGCTCGAGGAGCAATTATGGACACTCAAGCAGTTGTTGATGCTTGTAACAGCGGTCATATTGCAG...........................................................................................................................................................................................................................................GATACAGTGGAGATGTTTGGTACCCACAACCAGCTCCCAAGGACCATCTATGGCGTTACATGCCAAACCAAGCTATGACTCCTCACATTTCTGGGACTACCATTGATGCACAG...............................................................................................................TTGAGGTATGCAGCTGGAACAAAGGATATGTTGGACAGGTACTTCAAGGGTGAGGATTTCCCTGCTGAAAATTACATTGTCAAGGATGGGGAATTGGCACCTCAGTATCGCTAAATTATTTATGTATAGAGTTGTGTCTAGATTTCTGTGTTAAATAAACTGGCAAGCCGTGTCTTCAATAAGCTGATAAAATTGGCTACTTTATGTTCTTCTAGAACTCTAATGCAGTTTTTCTCCGGGTTAGCTGTAACTTTTGTGATGGAAACATATGTCCTCTTCTGTGATGGAGGTCTATGTATGATCCTCCAGTGTCTTTCTTGAGTCTATAACTGAACTTCCTTGCTGTGGTAGTTGTACTGGTGTTCCTGGACATTTTATGTTTT--AAAAAATTATCTTCTTGTTTGCTAGT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0236E02-u8qcS/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E349959" ref_strand="+" ref_description="SGN-E349959 [cTOS-4-A5]">
      <seq>gaagatctcgataagatgctctcgaaatgtgacatagtggtcatcaatacgcctcttacagagaaaacaaaaggaatgtttgacaaggaaagaattgcaaagttgaagaagggagttctaattgtaaacaatgctcgaggagcaattatggacactcaagcagttgttgatgcttgtaacagcggtcatattgcaggatacagtggagatgtttggtacccacaaccagctcccaaggaccatctatggcgttacatgccaaaccaagctatgactcctcacatttctgggactaccattgatgcacagttgaggtatgcagctggaacaaaggatatgttggacaggtacttcaagggtgaggatttccctgctgaaaattacattgtcaaggatggggaattggcacctcagtatcgctaaattatttatgtatagagttgtgtctagatttctgtgttaaataaactggcaagccgtgtcttcaataagctgataaaattggctactttatgttcttctagaactctaatgcagtttttctccgggttagctgtaacttttgtgatggaaacatatgtcctcttctgtgatggaggtctatgtatgatccctcagtgtctttcttgagtctataactgaacttccttgctgtggtagntgtactggtgttcctggacattttatgttttaaaaaaattatcttttcttgttgctagtaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0236E02-u8qcS/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0236E02.1" temp_strand="+" temp_description="C02HBa0236E02.1  AC215430.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0236E02 sequenced_by:kribb upload_account_name:korea">
        <position start="67935" stop="70342"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="68235" g_stop="68305" g_length="71"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="71" r_length="71" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="68306" i_stop="69046" i_length="741">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.768" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="69047" g_stop="69171" g_length="125"/>
          <reference_exon_boundary r_type="cDNA" r_start="72" r_stop="196" r_length="125" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="69172" i_stop="69406" i_length="235">
            <donor d_prob="0.983" d_score="1.00"/>
            <acceptor a_prob="0.964" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="69407" g_stop="69519" g_length="113"/>
          <reference_exon_boundary r_type="cDNA" r_start="197" r_stop="309" r_length="113" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="69520" i_stop="69630" i_length="111">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.989" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="69631" g_stop="70028" g_length="398"/>
          <reference_exon_boundary r_type="cDNA" r_start="310" r_stop="706" r_length="397" r_score="0.990"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="721" polyA_stop="733"/>
      <MATCH_line gen_id="C02HBa0236E02.1" gen_strand="+" ref_id="SGN-E349959" ref_strand="+">
        <total_alignment_score>0.994</total_alignment_score>
        <cumulative_length_of_scored_exons>707</cumulative_length_of_scored_exons>
        <coverage percentage="0.965" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0236E02.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E349959" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="68235" e_stop="68305"/>
          <exon e_start="69047" e_stop="69171"/>
          <exon e_start="69407" e_stop="69519"/>
          <exon e_start="69631" e_stop="70028"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAAGATCTCGATAAGATGCTCTCGAAATGTGACATAGTGGTCATCAATACGCCTCTTACAGAGAAAACAAAGTAAGGTTTCTGTTTCTGTAATTACCCGTCGTAAACCTATACAATAATATTTATTGACAAAGCTTCTTATATTCAAGTTATTTTAACAATGACTTAATTATGAAATGAACTAAGTAAGCTAAAGTGAATATTCATTGAGAATGAAATATGATATTTAGCGAAGGGAAGGAGAATCTTTGGTGTCATCGTAATTTTTTGGTATCACTCTAGATCATATATAAAGTAGTTGTATATTTAGATTCCCCGATTGTATTCCCTAAGTTAAGAAATTCTCTTGAGCATCCACCATATACTATGATACATGACTTTGGCTAAGCTCAAAAAGACTATCTCAATGATGGCCCTCCATGGATTCTCCACCTATATAAGCCACGGCTAAAGAAAAATTGCTTGGCCAAGTTGTCTTTTACCTTTGGCATGATGCAAAAAACATTTGATATTCTTTCTGTGTGAACCACTGCTACGAGTAATATGTTCTTAGAGATCATGTTTTCTTTTTGTTCTTCCTTTAATTTTCTATTTGAAGATTTGTCATCAGTTAGAGGTCATCGGTAGGATGATAGATGTTCTCAGCAACTTGTGTTGCCAGAATAATATGATTGCCAATGGAGTATTTTTAAGATTCTTGGAGATGTAAGAGTTGTTTCTGTCCATACATCACTCTTCTCATGTCACTAAGGTCATTGATTGTTTCCATGTGCTATATCGCAAATTGCTCACAATTTTAACTATGTGATCCAGAGGAATGTTTGACAAGGAAAGAATTGCAAAGTTGAAGAAGGGAGTTCTAATTGTAAACAATGCTCGAGGAGCAATTATGGACACTCAAGCAGTTGTTGATGCTTGTAACAGCGGTCATATTGCAGGTATTTTAACATAACTTGAACACATCATCCAGAGATGAGCCCTCAGCCTTAATATCAATTGAACACACCATTATATTTTTTTCTTCAATTCTTGCTTGTTTCTTTTCTTCAATATATTTTATCGACATTTGGAAGTAGTTCCATATCTTGTGGAATTGCCGAATCCTTTGAAGAAAGAAGTACTTCTAAAACTATATTGAGTTCTTTTCTTTCGGTTATTTCCCCCCAAATTTAGGATACAGTGGAGATGTTTGGTACCCACAACCAGCTCCCAAGGACCATCTATGGCGTTACATGCCAAACCAAGCTATGACTCCTCACATTTCTGGGACTACCATTGATGCACAGGTTTGTAAATACTCTGTTTCTCTAATTTCTTTAGGCTTTGCTTTTTCTTTACTTTCACGACATTATAATTGCGATTAAACTGAGAGAAGCTTGTTACTTTCAATTTCGCAGTTGAGGTATGCAGCTGGAACAAAGGATATGTTGGACAGGTACTTCAAGGGTGAGGATTTCCCTGCTGAAAATTACATTGTCAAGGATGGGGAATTGGCACCTCAGTATCGCTAAATTATTTATGTATAGAGTTGTGTCTAGATTTCTGTGTTAAATAAACTGGCAAGCCGTGTCTTCAATAAGCTGATAAAATTGGCTACTTTATGTTCTTCTAGAACTCTAATGCAGTTTTTCTCCGGGTTAGCTGTAACTTTTGTGATGGAAACATATGTCCTCTTCTGTGATGGAGGTCTATGTATGATCCTCCAGTGTCTTTCTTGAGTCTATAACTGAACTTCCTTGCTGTGGTAGTTGTACTGGTGTTCCTGGACATTTTATGTTTTAAAAAAAATTATCTT</genome_strand>
        <mrna_strand>GAAGATCTCGATAAGATGCTCTCGAAATGTGACATAGTGGTCATCAATACGCCTCTTACAGAGAAAACAAA.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGGAATGTTTGACAAGGAAAGAATTGCAAAGTTGAAGAAGGGAGTTCTAATTGTAAACAATGCTCGAGGAGCAATTATGGACACTCAAGCAGTTGTTGATGCTTGTAACAGCGGTCATATTGCAG...........................................................................................................................................................................................................................................GATACAGTGGAGATGTTTGGTACCCACAACCAGCTCCCAAGGACCATCTATGGCGTTACATGCCAAACCAAGCTATGACTCCTCACATTTCTGGGACTACCATTGATGCACAG...............................................................................................................TTGAGGTATGCAGCTGGAACAAAGGATATGTTGGACAGGTACTTCAAGGGTGAGGATTTCCCTGCTGAAAATTACATTGTCAAGGATGGGGAATTGGCACCTCAGTATCGCTAAATTATTTATGTATAGAGTTGTGTCTAGATTTCTGTGTTAAATAAACTGGCAAGCCGTGTCTTCAATAAGCTGATAAAATTGGCTACTTTATGTTCTTCTAGAACTCTAATGCAGTTTTTCTCCGGGTTAGCTGTAACTTTTGTGATGGAAACATATGTCCTCTTCTGTGATGGAGGTCTATGTATGATCCCTCAGTGTCTTTCTTGAGTCTATAACTGAACTTCCTTGCTGTGGTAGNTGTACTGGTGTTCCTGGACATTTTATGTTTT-AAAAAAATTATCTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0236E02-u8qcS/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E350172" ref_strand="+" ref_description="SGN-E350172 [cTOS-4-A6]">
      <seq>gaagatctcgataagatgctctcgaaatgtgacatagtggtcatcaatacgacctcttacagagaaaacaaaaggaatgtttgacaaggaaagaattgcaaagttgaagaagggagttctaattgtaaacaatgctcgaggagcaattatggacactcaagcagatgttgatgcttgtaacagcggtcatattgcaggatacagtggagatgtttggtacccacaaccagctcccaaggaccatctatggcgttacatgccaaaccaagctatgactcctcacatttctgggactaccattgatgcacagttgatgtatgcagctggaacaaaggatatgttggacaggtacttcaagggtgaggatttccctgctgaaaattacattgtcaaggatggggaattggcacctcagtatcgctaaattatttatgtatagaggtgtgtctagatttctgtgttaaataaactggcaagccgtgtcttcaataagctgataagattggctactttatgttcttctagaactctaatgcnagttttctccgggttagctgtaactattgtgatggaaacatatgtcctcttctgtgatggaagtctatgtatgatccatcagtgtctctcttgagtctataactgaacttccctg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0236E02-u8qcS/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0236E02.1" temp_strand="+" temp_description="C02HBa0236E02.1  AC215430.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0236E02 sequenced_by:kribb upload_account_name:korea">
        <position start="67935" stop="70272"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="68235" g_stop="68305" g_length="71"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="72" r_length="72" r_score="0.972"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="68306" i_stop="69046" i_length="741">
            <donor d_prob="0.995" d_score="0.96"/>
            <acceptor a_prob="0.768" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="69047" g_stop="69171" g_length="125"/>
          <reference_exon_boundary r_type="cDNA" r_start="73" r_stop="197" r_length="125" r_score="0.992"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="69172" i_stop="69406" i_length="235">
            <donor d_prob="0.983" d_score="0.98"/>
            <acceptor a_prob="0.964" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="69407" g_stop="69519" g_length="113"/>
          <reference_exon_boundary r_type="cDNA" r_start="198" r_stop="310" r_length="113" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="69520" i_stop="69630" i_length="111">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.989" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="69631" g_stop="69972" g_length="342"/>
          <reference_exon_boundary r_type="cDNA" r_start="311" r_stop="652" r_length="342" r_score="0.965"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0236E02.1" gen_strand="+" ref_id="SGN-E350172" ref_strand="+">
        <total_alignment_score>0.977</total_alignment_score>
        <cumulative_length_of_scored_exons>651</cumulative_length_of_scored_exons>
        <coverage percentage="0.998" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0236E02.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E350172" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="68235" e_stop="68305"/>
          <exon e_start="69047" e_stop="69171"/>
          <exon e_start="69407" e_stop="69519"/>
          <exon e_start="69631" e_stop="69972"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAAGATCTCGATAAGATGCTCTCGAAATGTGACATAGTGGTCATCAATACG-CCTCTTACAGAGAAAACAAAGTAAGGTTTCTGTTTCTGTAATTACCCGTCGTAAACCTATACAATAATATTTATTGACAAAGCTTCTTATATTCAAGTTATTTTAACAATGACTTAATTATGAAATGAACTAAGTAAGCTAAAGTGAATATTCATTGAGAATGAAATATGATATTTAGCGAAGGGAAGGAGAATCTTTGGTGTCATCGTAATTTTTTGGTATCACTCTAGATCATATATAAAGTAGTTGTATATTTAGATTCCCCGATTGTATTCCCTAAGTTAAGAAATTCTCTTGAGCATCCACCATATACTATGATACATGACTTTGGCTAAGCTCAAAAAGACTATCTCAATGATGGCCCTCCATGGATTCTCCACCTATATAAGCCACGGCTAAAGAAAAATTGCTTGGCCAAGTTGTCTTTTACCTTTGGCATGATGCAAAAAACATTTGATATTCTTTCTGTGTGAACCACTGCTACGAGTAATATGTTCTTAGAGATCATGTTTTCTTTTTGTTCTTCCTTTAATTTTCTATTTGAAGATTTGTCATCAGTTAGAGGTCATCGGTAGGATGATAGATGTTCTCAGCAACTTGTGTTGCCAGAATAATATGATTGCCAATGGAGTATTTTTAAGATTCTTGGAGATGTAAGAGTTGTTTCTGTCCATACATCACTCTTCTCATGTCACTAAGGTCATTGATTGTTTCCATGTGCTATATCGCAAATTGCTCACAATTTTAACTATGTGATCCAGAGGAATGTTTGACAAGGAAAGAATTGCAAAGTTGAAGAAGGGAGTTCTAATTGTAAACAATGCTCGAGGAGCAATTATGGACACTCAAGCAGTTGTTGATGCTTGTAACAGCGGTCATATTGCAGGTATTTTAACATAACTTGAACACATCATCCAGAGATGAGCCCTCAGCCTTAATATCAATTGAACACACCATTATATTTTTTTCTTCAATTCTTGCTTGTTTCTTTTCTTCAATATATTTTATCGACATTTGGAAGTAGTTCCATATCTTGTGGAATTGCCGAATCCTTTGAAGAAAGAAGTACTTCTAAAACTATATTGAGTTCTTTTCTTTCGGTTATTTCCCCCCAAATTTAGGATACAGTGGAGATGTTTGGTACCCACAACCAGCTCCCAAGGACCATCTATGGCGTTACATGCCAAACCAAGCTATGACTCCTCACATTTCTGGGACTACCATTGATGCACAGGTTTGTAAATACTCTGTTTCTCTAATTTCTTTAGGCTTTGCTTTTTCTTTACTTTCACGACATTATAATTGCGATTAAACTGAGAGAAGCTTGTTACTTTCAATTTCGCAGTTGAGGTATGCAGCTGGAACAAAGGATATGTTGGACAGGTACTTCAAGGGTGAGGATTTCCCTGCTGAAAATTACATTGTCAAGGATGGGGAATTGGCACCTCAGTATCGCTAAATTATTTATGTATAGAGTTGTGTCTAGATTTCTGTGTTAAATAAACTGGCAAGCCGTGTCTTCAATAAGCTGATAAAATTGGCTACTTTATGTTCTTCTAGAACTCTAATGCAGTTTTTCTCCGGGTTAGCTGTAACTTTTGTGATGGAAACATATGTCCTCTTCTGTGATGGAGGTCTATGTATGATCCTCCAGTGTCTTTCTTGAGTCTATAACTGAACTTCCTTG</genome_strand>
        <mrna_strand>GAAGATCTCGATAAGATGCTCTCGAAATGTGACATAGTGGTCATCAATACGACCTCTTACAGAGAAAACAAA.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGGAATGTTTGACAAGGAAAGAATTGCAAAGTTGAAGAAGGGAGTTCTAATTGTAAACAATGCTCGAGGAGCAATTATGGACACTCAAGCAGATGTTGATGCTTGTAACAGCGGTCATATTGCAG...........................................................................................................................................................................................................................................GATACAGTGGAGATGTTTGGTACCCACAACCAGCTCCCAAGGACCATCTATGGCGTTACATGCCAAACCAAGCTATGACTCCTCACATTTCTGGGACTACCATTGATGCACAG...............................................................................................................TTGATGTATGCAGCTGGAACAAAGGATATGTTGGACAGGTACTTCAAGGGTGAGGATTTCCCTGCTGAAAATTACATTGTCAAGGATGGGGAATTGGCACCTCAGTATCGCTAAATTATTTATGTATAGAGGTGTGTCTAGATTTCTGTGTTAAATAAACTGGCAAGCCGTGTCTTCAATAAGCTGATAAGATTGGCTACTTTATGTTCTTCTAGAACTCTAATGCNAGTTTTCTCCGGGTTAGCTGTAACTATTGTGATGGAAACATATGTCCTCTTCTGTGATGGAAGTCTATGTATGATCCATCAGTGTCTCTCTTGAGTCTATAACTGAACTTCCCTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0236E02-u8qcS/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E214434" ref_strand="+" ref_description="SGN-E214434 [cLEC-77-D21]">
      <seq>gacatagtggtcatcaatacgcctcttacagagaaaacaaaaggaatgtttgacaaggaaagaattgcaaagttgaagaagggagttctaattgtaaacaatgctcgaggagcaattatggacactcaagcagttgttgatgcttgtaacagcggtcatattgcaggatacagtggagatgtttggtacccacaaccagctcccaaggaccatctatggcgttacatgccaaaccaagctatgactcctcacatttctgggactaccattgatgcacagttgaggtatgcagctggaacaaaggatatgttggacaggtacttcaagggtgaggatttccctgctgaaaattacattgtcaaggatggggaattggcacctcagtatcgctaaattatttatgtatagagttgtgtctagatttctgtgttaaataaactggcaagccgtgtcttcaataagctgataaaattggctactttatgttcttctagaactctaatgcagtttttctccgggttagctgtaacttttgtgatggaaacatatgtcctcttctgtgatggaggtctatgtatgatcctccagtgtctttcttgagtctataactgaacttccttgctgtggtagttgtactggtgttcctggacattttatgttttaaaaaaaattatcttcttgtttgc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0236E02-u8qcS/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0236E02.1" temp_strand="+" temp_description="C02HBa0236E02.1  AC215430.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0236E02 sequenced_by:kribb upload_account_name:korea">
        <position start="67965" stop="70337"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="68265" g_stop="68305" g_length="41"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="41" r_length="41" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="68306" i_stop="69046" i_length="741">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.768" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="69047" g_stop="69171" g_length="125"/>
          <reference_exon_boundary r_type="cDNA" r_start="42" r_stop="166" r_length="125" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="69172" i_stop="69406" i_length="235">
            <donor d_prob="0.983" d_score="1.00"/>
            <acceptor a_prob="0.964" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="69407" g_stop="69519" g_length="113"/>
          <reference_exon_boundary r_type="cDNA" r_start="167" r_stop="279" r_length="113" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="69520" i_stop="69630" i_length="111">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.989" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="69631" g_stop="70037" g_length="407"/>
          <reference_exon_boundary r_type="cDNA" r_start="280" r_stop="686" r_length="407" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0236E02.1" gen_strand="+" ref_id="SGN-E214434" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>686</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0236E02.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E214434" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="68265" e_stop="68305"/>
          <exon e_start="69047" e_stop="69171"/>
          <exon e_start="69407" e_stop="69519"/>
          <exon e_start="69631" e_stop="70037"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GACATAGTGGTCATCAATACGCCTCTTACAGAGAAAACAAAGTAAGGTTTCTGTTTCTGTAATTACCCGTCGTAAACCTATACAATAATATTTATTGACAAAGCTTCTTATATTCAAGTTATTTTAACAATGACTTAATTATGAAATGAACTAAGTAAGCTAAAGTGAATATTCATTGAGAATGAAATATGATATTTAGCGAAGGGAAGGAGAATCTTTGGTGTCATCGTAATTTTTTGGTATCACTCTAGATCATATATAAAGTAGTTGTATATTTAGATTCCCCGATTGTATTCCCTAAGTTAAGAAATTCTCTTGAGCATCCACCATATACTATGATACATGACTTTGGCTAAGCTCAAAAAGACTATCTCAATGATGGCCCTCCATGGATTCTCCACCTATATAAGCCACGGCTAAAGAAAAATTGCTTGGCCAAGTTGTCTTTTACCTTTGGCATGATGCAAAAAACATTTGATATTCTTTCTGTGTGAACCACTGCTACGAGTAATATGTTCTTAGAGATCATGTTTTCTTTTTGTTCTTCCTTTAATTTTCTATTTGAAGATTTGTCATCAGTTAGAGGTCATCGGTAGGATGATAGATGTTCTCAGCAACTTGTGTTGCCAGAATAATATGATTGCCAATGGAGTATTTTTAAGATTCTTGGAGATGTAAGAGTTGTTTCTGTCCATACATCACTCTTCTCATGTCACTAAGGTCATTGATTGTTTCCATGTGCTATATCGCAAATTGCTCACAATTTTAACTATGTGATCCAGAGGAATGTTTGACAAGGAAAGAATTGCAAAGTTGAAGAAGGGAGTTCTAATTGTAAACAATGCTCGAGGAGCAATTATGGACACTCAAGCAGTTGTTGATGCTTGTAACAGCGGTCATATTGCAGGTATTTTAACATAACTTGAACACATCATCCAGAGATGAGCCCTCAGCCTTAATATCAATTGAACACACCATTATATTTTTTTCTTCAATTCTTGCTTGTTTCTTTTCTTCAATATATTTTATCGACATTTGGAAGTAGTTCCATATCTTGTGGAATTGCCGAATCCTTTGAAGAAAGAAGTACTTCTAAAACTATATTGAGTTCTTTTCTTTCGGTTATTTCCCCCCAAATTTAGGATACAGTGGAGATGTTTGGTACCCACAACCAGCTCCCAAGGACCATCTATGGCGTTACATGCCAAACCAAGCTATGACTCCTCACATTTCTGGGACTACCATTGATGCACAGGTTTGTAAATACTCTGTTTCTCTAATTTCTTTAGGCTTTGCTTTTTCTTTACTTTCACGACATTATAATTGCGATTAAACTGAGAGAAGCTTGTTACTTTCAATTTCGCAGTTGAGGTATGCAGCTGGAACAAAGGATATGTTGGACAGGTACTTCAAGGGTGAGGATTTCCCTGCTGAAAATTACATTGTCAAGGATGGGGAATTGGCACCTCAGTATCGCTAAATTATTTATGTATAGAGTTGTGTCTAGATTTCTGTGTTAAATAAACTGGCAAGCCGTGTCTTCAATAAGCTGATAAAATTGGCTACTTTATGTTCTTCTAGAACTCTAATGCAGTTTTTCTCCGGGTTAGCTGTAACTTTTGTGATGGAAACATATGTCCTCTTCTGTGATGGAGGTCTATGTATGATCCTCCAGTGTCTTTCTTGAGTCTATAACTGAACTTCCTTGCTGTGGTAGTTGTACTGGTGTTCCTGGACATTTTATGTTTTAAAAAAAATTATCTTCTTGTTTGC</genome_strand>
        <mrna_strand>GACATAGTGGTCATCAATACGCCTCTTACAGAGAAAACAAA.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGGAATGTTTGACAAGGAAAGAATTGCAAAGTTGAAGAAGGGAGTTCTAATTGTAAACAATGCTCGAGGAGCAATTATGGACACTCAAGCAGTTGTTGATGCTTGTAACAGCGGTCATATTGCAG...........................................................................................................................................................................................................................................GATACAGTGGAGATGTTTGGTACCCACAACCAGCTCCCAAGGACCATCTATGGCGTTACATGCCAAACCAAGCTATGACTCCTCACATTTCTGGGACTACCATTGATGCACAG...............................................................................................................TTGAGGTATGCAGCTGGAACAAAGGATATGTTGGACAGGTACTTCAAGGGTGAGGATTTCCCTGCTGAAAATTACATTGTCAAGGATGGGGAATTGGCACCTCAGTATCGCTAAATTATTTATGTATAGAGTTGTGTCTAGATTTCTGTGTTAAATAAACTGGCAAGCCGTGTCTTCAATAAGCTGATAAAATTGGCTACTTTATGTTCTTCTAGAACTCTAATGCAGTTTTTCTCCGGGTTAGCTGTAACTTTTGTGATGGAAACATATGTCCTCTTCTGTGATGGAGGTCTATGTATGATCCTCCAGTGTCTTTCTTGAGTCTATAACTGAACTTCCTTGCTGTGGTAGTTGTACTGGTGTTCCTGGACATTTTATGTTTTAAAAAAAATTATCTTCTTGTTTGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0236E02-u8qcS/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E410038" ref_strand="+" ref_description="SGN-E410038 [PPI-15-J10]">
      <seq>gtcatcaatacgcctcttacagaaaaaacaaaaggaatgtttgacaaggaaagaattgcaaagttgaagaagggagttctaattgtaaacaatgctcgaggagcaattatggacactcaagcagttgttgatgcttgtaacagcggtcatattgcaggatacagtggagatgtttggtacccacaaccagctcccaaggaccatccatggcgctacatgccaaaccaagctatgactcctcacatttctgggactaccattgatgcacagttgaggtatgcagctggaacaaaggatatgttggacaggtacttcaagggtgaggatttccctgctgaaaattacattgtcaaggatggggaattggcacctcagtatcgctaaattattaatgtaccttagagttgtgtctagatttctgtgtcaaataaactggcaagctgtgtcttaaataagctgataaaattggctacttatgttcttttagaactgtaatgcagtttttctccggttggctgtatcgtaacgtttgtgatggaaacatgtcctcttctgtgatggaggttaatgtgtgatcctccagtgtctttcttgagtctataactgaacttccttgctantgtagttgtactggtgttgtcctggacattttatgattaaaaaaagattatcttctctttgct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0236E02-u8qcS/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0236E02.1" temp_strand="+" temp_description="C02HBa0236E02.1  AC215430.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0236E02 sequenced_by:kribb upload_account_name:korea">
        <position start="67974" stop="70338"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="68274" g_stop="68305" g_length="32"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="32" r_length="32" r_score="0.969"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="68306" i_stop="69046" i_length="741">
            <donor d_prob="0.995" d_score="0.00"/>
            <acceptor a_prob="0.768" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="69047" g_stop="69171" g_length="125"/>
          <reference_exon_boundary r_type="cDNA" r_start="33" r_stop="157" r_length="125" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="69172" i_stop="69406" i_length="235">
            <donor d_prob="0.983" d_score="1.00"/>
            <acceptor a_prob="0.964" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="69407" g_stop="69519" g_length="113"/>
          <reference_exon_boundary r_type="cDNA" r_start="158" r_stop="270" r_length="113" r_score="0.982"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="69520" i_stop="69630" i_length="111">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.989" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="69631" g_stop="70038" g_length="408"/>
          <reference_exon_boundary r_type="cDNA" r_start="271" r_stop="683" r_length="413" r_score="0.895"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0236E02.1" gen_strand="+" ref_id="SGN-E410038" ref_strand="+">
        <total_alignment_score>0.930</total_alignment_score>
        <cumulative_length_of_scored_exons>678</cumulative_length_of_scored_exons>
        <coverage percentage="0.993" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0236E02.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E410038" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="68274" e_stop="68305"/>
          <exon e_start="69047" e_stop="69171"/>
          <exon e_start="69407" e_stop="69519"/>
          <exon e_start="69631" e_stop="70038"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTCATCAATACGCCTCTTACAGAGAAAACAAAGTAAGGTTTCTGTTTCTGTAATTACCCGTCGTAAACCTATACAATAATATTTATTGACAAAGCTTCTTATATTCAAGTTATTTTAACAATGACTTAATTATGAAATGAACTAAGTAAGCTAAAGTGAATATTCATTGAGAATGAAATATGATATTTAGCGAAGGGAAGGAGAATCTTTGGTGTCATCGTAATTTTTTGGTATCACTCTAGATCATATATAAAGTAGTTGTATATTTAGATTCCCCGATTGTATTCCCTAAGTTAAGAAATTCTCTTGAGCATCCACCATATACTATGATACATGACTTTGGCTAAGCTCAAAAAGACTATCTCAATGATGGCCCTCCATGGATTCTCCACCTATATAAGCCACGGCTAAAGAAAAATTGCTTGGCCAAGTTGTCTTTTACCTTTGGCATGATGCAAAAAACATTTGATATTCTTTCTGTGTGAACCACTGCTACGAGTAATATGTTCTTAGAGATCATGTTTTCTTTTTGTTCTTCCTTTAATTTTCTATTTGAAGATTTGTCATCAGTTAGAGGTCATCGGTAGGATGATAGATGTTCTCAGCAACTTGTGTTGCCAGAATAATATGATTGCCAATGGAGTATTTTTAAGATTCTTGGAGATGTAAGAGTTGTTTCTGTCCATACATCACTCTTCTCATGTCACTAAGGTCATTGATTGTTTCCATGTGCTATATCGCAAATTGCTCACAATTTTAACTATGTGATCCAGAGGAATGTTTGACAAGGAAAGAATTGCAAAGTTGAAGAAGGGAGTTCTAATTGTAAACAATGCTCGAGGAGCAATTATGGACACTCAAGCAGTTGTTGATGCTTGTAACAGCGGTCATATTGCAGGTATTTTAACATAACTTGAACACATCATCCAGAGATGAGCCCTCAGCCTTAATATCAATTGAACACACCATTATATTTTTTTCTTCAATTCTTGCTTGTTTCTTTTCTTCAATATATTTTATCGACATTTGGAAGTAGTTCCATATCTTGTGGAATTGCCGAATCCTTTGAAGAAAGAAGTACTTCTAAAACTATATTGAGTTCTTTTCTTTCGGTTATTTCCCCCCAAATTTAGGATACAGTGGAGATGTTTGGTACCCACAACCAGCTCCCAAGGACCATCTATGGCGTTACATGCCAAACCAAGCTATGACTCCTCACATTTCTGGGACTACCATTGATGCACAGGTTTGTAAATACTCTGTTTCTCTAATTTCTTTAGGCTTTGCTTTTTCTTTACTTTCACGACATTATAATTGCGATTAAACTGAGAGAAGCTTGTTACTTTCAATTTCGCAGTTGAGGTATGCAGCTGGAACAAAGGATATGTTGGACAGGTACTTCAAGGGTGAGGATTTCCCTGCTGAAAATTACATTGTCAAGGATGGGGAATTGGCACCTCAGTATCGCTAAATTATTTATGTA---TAGAGTTGTGTCTAGATTTCTGTGTTAAATAAACTGGCAAGCCGTGTCTTCAATAAGCTGATAAAATTGGCTACTTTATGTTCTTCTAGAACTCTAATGCAGTTTTTCTCC-G--GGTTAGCT-GTAACTTTTGTGATGGAAACATATGTCCTCTTCTGTGATGGAGGTCTATGTATGATCCTCCAGTGTCTTTCTTGAGTCTATAACTGAACTTCCTTGCTGTGGTAGTTGTACTGGTG-T-TCCTGGACATTTTATGTTTTAAAAAAAATTATCTTCTTGTTTGCT</genome_strand>
        <mrna_strand>GTCATCAATACGCCTCTTACAGAAAAAACAAA.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGGAATGTTTGACAAGGAAAGAATTGCAAAGTTGAAGAAGGGAGTTCTAATTGTAAACAATGCTCGAGGAGCAATTATGGACACTCAAGCAGTTGTTGATGCTTGTAACAGCGGTCATATTGCAG...........................................................................................................................................................................................................................................GATACAGTGGAGATGTTTGGTACCCACAACCAGCTCCCAAGGACCATCCATGGCGCTACATGCCAAACCAAGCTATGACTCCTCACATTTCTGGGACTACCATTGATGCACAG...............................................................................................................TTGAGGTATGCAGCTGGAACAAAGGATATGTTGGACAGGTACTTCAAGGGTGAGGATTTCCCTGCTGAAAATTACATTGTCAAGGATGGGGAATTGGCACCTCAGTATCGCTAAATTATTAATGTACCTTAGAGTTGTGTCTAGATTTCTGTGTCAAATAAACTGGCAAGCTGTGTCTTAAATAAGCTGATAAAATTGGCTAC-TTATGTTCTTTTAGAACTGTAATGCAGTTTTTCTCCGGTTGGCTGTATCGTAACGTTTGTGATGGAAAC--ATGTCCTCTTCTGTGATGGAGGTTAATGTGTGATCCTCCAGTGTCTTTCTTGAGTCTATAACTGAACTTCCTTGCTANTGTAGTTGTACTGGTGTTGTCCTGGACATTTTATGATTAAAAAAAGATTATCTTC-TCTTTGCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0236E02-u8qcS/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E242912" ref_strand="+" ref_description="SGN-E242912 [cLED-31-K14]">
      <seq>catcaatactcctcttacagagaaaacaaaaggaatgtttgacaaggaaagaattgcaaagttgaagaagggagttctaattgtaaacaatgctcgaggagcaattatggacactcaagcagttgttgatgcttgtaacagcggtcatattgcaggatacagtggagatgtttggtacccacaaccagctcccaaggaccatctatggcgttacatgccaaaccaagctatgactcctcacatttctgggactaccattgatgcacagttgaggtatgcagctggaacaaaggatatgttggacaggtacttcaagggtgaggatttccctgctgaaaattacattgtcaaggatggggaattggcacctcagtatcgctaaattatttatgtatagagttgtgtctagatttctgtgttaaataaactggcaagccgtgtcttcaataagctgataaaattggctactttatgttcttctagaactctaatgcagtttttctccgggttagctgtaacttttgtgatggaaacatatgtcctcttctgtgatggaggtctatgtatgatcctccagtgtctttcttgagtctataactgaac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0236E02-u8qcS/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0236E02.1" temp_strand="+" temp_description="C02HBa0236E02.1  AC215430.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0236E02 sequenced_by:kribb upload_account_name:korea">
        <position start="67976" stop="70265"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="68276" g_stop="68305" g_length="30"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="30" r_length="30" r_score="0.967"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="68306" i_stop="69046" i_length="741">
            <donor d_prob="0.995" d_score="0.00"/>
            <acceptor a_prob="0.768" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="69047" g_stop="69171" g_length="125"/>
          <reference_exon_boundary r_type="cDNA" r_start="31" r_stop="155" r_length="125" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="69172" i_stop="69406" i_length="235">
            <donor d_prob="0.983" d_score="1.00"/>
            <acceptor a_prob="0.964" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="69407" g_stop="69519" g_length="113"/>
          <reference_exon_boundary r_type="cDNA" r_start="156" r_stop="268" r_length="113" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="69520" i_stop="69630" i_length="111">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.989" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="69631" g_stop="69965" g_length="335"/>
          <reference_exon_boundary r_type="cDNA" r_start="269" r_stop="603" r_length="335" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0236E02.1" gen_strand="+" ref_id="SGN-E242912" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>603</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0236E02.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E242912" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="68276" e_stop="68305"/>
          <exon e_start="69047" e_stop="69171"/>
          <exon e_start="69407" e_stop="69519"/>
          <exon e_start="69631" e_stop="69965"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CATCAATACGCCTCTTACAGAGAAAACAAAGTAAGGTTTCTGTTTCTGTAATTACCCGTCGTAAACCTATACAATAATATTTATTGACAAAGCTTCTTATATTCAAGTTATTTTAACAATGACTTAATTATGAAATGAACTAAGTAAGCTAAAGTGAATATTCATTGAGAATGAAATATGATATTTAGCGAAGGGAAGGAGAATCTTTGGTGTCATCGTAATTTTTTGGTATCACTCTAGATCATATATAAAGTAGTTGTATATTTAGATTCCCCGATTGTATTCCCTAAGTTAAGAAATTCTCTTGAGCATCCACCATATACTATGATACATGACTTTGGCTAAGCTCAAAAAGACTATCTCAATGATGGCCCTCCATGGATTCTCCACCTATATAAGCCACGGCTAAAGAAAAATTGCTTGGCCAAGTTGTCTTTTACCTTTGGCATGATGCAAAAAACATTTGATATTCTTTCTGTGTGAACCACTGCTACGAGTAATATGTTCTTAGAGATCATGTTTTCTTTTTGTTCTTCCTTTAATTTTCTATTTGAAGATTTGTCATCAGTTAGAGGTCATCGGTAGGATGATAGATGTTCTCAGCAACTTGTGTTGCCAGAATAATATGATTGCCAATGGAGTATTTTTAAGATTCTTGGAGATGTAAGAGTTGTTTCTGTCCATACATCACTCTTCTCATGTCACTAAGGTCATTGATTGTTTCCATGTGCTATATCGCAAATTGCTCACAATTTTAACTATGTGATCCAGAGGAATGTTTGACAAGGAAAGAATTGCAAAGTTGAAGAAGGGAGTTCTAATTGTAAACAATGCTCGAGGAGCAATTATGGACACTCAAGCAGTTGTTGATGCTTGTAACAGCGGTCATATTGCAGGTATTTTAACATAACTTGAACACATCATCCAGAGATGAGCCCTCAGCCTTAATATCAATTGAACACACCATTATATTTTTTTCTTCAATTCTTGCTTGTTTCTTTTCTTCAATATATTTTATCGACATTTGGAAGTAGTTCCATATCTTGTGGAATTGCCGAATCCTTTGAAGAAAGAAGTACTTCTAAAACTATATTGAGTTCTTTTCTTTCGGTTATTTCCCCCCAAATTTAGGATACAGTGGAGATGTTTGGTACCCACAACCAGCTCCCAAGGACCATCTATGGCGTTACATGCCAAACCAAGCTATGACTCCTCACATTTCTGGGACTACCATTGATGCACAGGTTTGTAAATACTCTGTTTCTCTAATTTCTTTAGGCTTTGCTTTTTCTTTACTTTCACGACATTATAATTGCGATTAAACTGAGAGAAGCTTGTTACTTTCAATTTCGCAGTTGAGGTATGCAGCTGGAACAAAGGATATGTTGGACAGGTACTTCAAGGGTGAGGATTTCCCTGCTGAAAATTACATTGTCAAGGATGGGGAATTGGCACCTCAGTATCGCTAAATTATTTATGTATAGAGTTGTGTCTAGATTTCTGTGTTAAATAAACTGGCAAGCCGTGTCTTCAATAAGCTGATAAAATTGGCTACTTTATGTTCTTCTAGAACTCTAATGCAGTTTTTCTCCGGGTTAGCTGTAACTTTTGTGATGGAAACATATGTCCTCTTCTGTGATGGAGGTCTATGTATGATCCTCCAGTGTCTTTCTTGAGTCTATAACTGAAC</genome_strand>
        <mrna_strand>CATCAATACTCCTCTTACAGAGAAAACAAA.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGGAATGTTTGACAAGGAAAGAATTGCAAAGTTGAAGAAGGGAGTTCTAATTGTAAACAATGCTCGAGGAGCAATTATGGACACTCAAGCAGTTGTTGATGCTTGTAACAGCGGTCATATTGCAG...........................................................................................................................................................................................................................................GATACAGTGGAGATGTTTGGTACCCACAACCAGCTCCCAAGGACCATCTATGGCGTTACATGCCAAACCAAGCTATGACTCCTCACATTTCTGGGACTACCATTGATGCACAG...............................................................................................................TTGAGGTATGCAGCTGGAACAAAGGATATGTTGGACAGGTACTTCAAGGGTGAGGATTTCCCTGCTGAAAATTACATTGTCAAGGATGGGGAATTGGCACCTCAGTATCGCTAAATTATTTATGTATAGAGTTGTGTCTAGATTTCTGTGTTAAATAAACTGGCAAGCCGTGTCTTCAATAAGCTGATAAAATTGGCTACTTTATGTTCTTCTAGAACTCTAATGCAGTTTTTCTCCGGGTTAGCTGTAACTTTTGTGATGGAAACATATGTCCTCTTCTGTGATGGAGGTCTATGTATGATCCTCCAGTGTCTTTCTTGAGTCTATAACTGAAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0236E02-u8qcS/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E243545" ref_strand="+" ref_description="SGN-E243545 [cLED-34-E11]">
      <seq>catcaatacgcctcttacagagaaaacaaaaggaatgtttgacaaggaaagaattgcaaagttgaagaagggagttctaattgtaaacaatgctcgaggagcaattatggacactcaagcagttgttgatgcttgtaacagcggtcatattgcaggatacagtggagatgtttggtacccacaaccagctcccaaggaccatctatggcgttacatgccaaaccaagctatgactcctcacatttctgggactaccattgatgcacagttgaggtatgcagctggaacaaaggatatgttggacaggtacttcaagggtgaggatttccctgctgaaaattacattgtcaaggatggggaattggcacctcagtatcgctaaattatttatgtatagagttgtgtctagatttctgtgttaaataaactggcaagccgtgtcttcaataagctgataaaattggctactttatgttcttctagaactctaatgcagtttttctccgggttagctgtaacttttgtgatggaaacatatgtcctcttctgtgatggaggtctatgtatgatcc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0236E02-u8qcS/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0236E02.1" temp_strand="+" temp_description="C02HBa0236E02.1  AC215430.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0236E02 sequenced_by:kribb upload_account_name:korea">
        <position start="67976" stop="70234"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="68276" g_stop="68305" g_length="30"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="30" r_length="30" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="68306" i_stop="69046" i_length="741">
            <donor d_prob="0.995" d_score="0.00"/>
            <acceptor a_prob="0.768" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="69047" g_stop="69171" g_length="125"/>
          <reference_exon_boundary r_type="cDNA" r_start="31" r_stop="155" r_length="125" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="69172" i_stop="69406" i_length="235">
            <donor d_prob="0.983" d_score="1.00"/>
            <acceptor a_prob="0.964" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="69407" g_stop="69519" g_length="113"/>
          <reference_exon_boundary r_type="cDNA" r_start="156" r_stop="268" r_length="113" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="69520" i_stop="69630" i_length="111">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.989" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="69631" g_stop="69934" g_length="304"/>
          <reference_exon_boundary r_type="cDNA" r_start="269" r_stop="572" r_length="304" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0236E02.1" gen_strand="+" ref_id="SGN-E243545" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>572</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0236E02.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E243545" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="68276" e_stop="68305"/>
          <exon e_start="69047" e_stop="69171"/>
          <exon e_start="69407" e_stop="69519"/>
          <exon e_start="69631" e_stop="69934"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CATCAATACGCCTCTTACAGAGAAAACAAAGTAAGGTTTCTGTTTCTGTAATTACCCGTCGTAAACCTATACAATAATATTTATTGACAAAGCTTCTTATATTCAAGTTATTTTAACAATGACTTAATTATGAAATGAACTAAGTAAGCTAAAGTGAATATTCATTGAGAATGAAATATGATATTTAGCGAAGGGAAGGAGAATCTTTGGTGTCATCGTAATTTTTTGGTATCACTCTAGATCATATATAAAGTAGTTGTATATTTAGATTCCCCGATTGTATTCCCTAAGTTAAGAAATTCTCTTGAGCATCCACCATATACTATGATACATGACTTTGGCTAAGCTCAAAAAGACTATCTCAATGATGGCCCTCCATGGATTCTCCACCTATATAAGCCACGGCTAAAGAAAAATTGCTTGGCCAAGTTGTCTTTTACCTTTGGCATGATGCAAAAAACATTTGATATTCTTTCTGTGTGAACCACTGCTACGAGTAATATGTTCTTAGAGATCATGTTTTCTTTTTGTTCTTCCTTTAATTTTCTATTTGAAGATTTGTCATCAGTTAGAGGTCATCGGTAGGATGATAGATGTTCTCAGCAACTTGTGTTGCCAGAATAATATGATTGCCAATGGAGTATTTTTAAGATTCTTGGAGATGTAAGAGTTGTTTCTGTCCATACATCACTCTTCTCATGTCACTAAGGTCATTGATTGTTTCCATGTGCTATATCGCAAATTGCTCACAATTTTAACTATGTGATCCAGAGGAATGTTTGACAAGGAAAGAATTGCAAAGTTGAAGAAGGGAGTTCTAATTGTAAACAATGCTCGAGGAGCAATTATGGACACTCAAGCAGTTGTTGATGCTTGTAACAGCGGTCATATTGCAGGTATTTTAACATAACTTGAACACATCATCCAGAGATGAGCCCTCAGCCTTAATATCAATTGAACACACCATTATATTTTTTTCTTCAATTCTTGCTTGTTTCTTTTCTTCAATATATTTTATCGACATTTGGAAGTAGTTCCATATCTTGTGGAATTGCCGAATCCTTTGAAGAAAGAAGTACTTCTAAAACTATATTGAGTTCTTTTCTTTCGGTTATTTCCCCCCAAATTTAGGATACAGTGGAGATGTTTGGTACCCACAACCAGCTCCCAAGGACCATCTATGGCGTTACATGCCAAACCAAGCTATGACTCCTCACATTTCTGGGACTACCATTGATGCACAGGTTTGTAAATACTCTGTTTCTCTAATTTCTTTAGGCTTTGCTTTTTCTTTACTTTCACGACATTATAATTGCGATTAAACTGAGAGAAGCTTGTTACTTTCAATTTCGCAGTTGAGGTATGCAGCTGGAACAAAGGATATGTTGGACAGGTACTTCAAGGGTGAGGATTTCCCTGCTGAAAATTACATTGTCAAGGATGGGGAATTGGCACCTCAGTATCGCTAAATTATTTATGTATAGAGTTGTGTCTAGATTTCTGTGTTAAATAAACTGGCAAGCCGTGTCTTCAATAAGCTGATAAAATTGGCTACTTTATGTTCTTCTAGAACTCTAATGCAGTTTTTCTCCGGGTTAGCTGTAACTTTTGTGATGGAAACATATGTCCTCTTCTGTGATGGAGGTCTATGTATGATCC</genome_strand>
        <mrna_strand>CATCAATACGCCTCTTACAGAGAAAACAAA.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGGAATGTTTGACAAGGAAAGAATTGCAAAGTTGAAGAAGGGAGTTCTAATTGTAAACAATGCTCGAGGAGCAATTATGGACACTCAAGCAGTTGTTGATGCTTGTAACAGCGGTCATATTGCAG...........................................................................................................................................................................................................................................GATACAGTGGAGATGTTTGGTACCCACAACCAGCTCCCAAGGACCATCTATGGCGTTACATGCCAAACCAAGCTATGACTCCTCACATTTCTGGGACTACCATTGATGCACAG...............................................................................................................TTGAGGTATGCAGCTGGAACAAAGGATATGTTGGACAGGTACTTCAAGGGTGAGGATTTCCCTGCTGAAAATTACATTGTCAAGGATGGGGAATTGGCACCTCAGTATCGCTAAATTATTTATGTATAGAGTTGTGTCTAGATTTCTGTGTTAAATAAACTGGCAAGCCGTGTCTTCAATAAGCTGATAAAATTGGCTACTTTATGTTCTTCTAGAACTCTAATGCAGTTTTTCTCCGGGTTAGCTGTAACTTTTGTGATGGAAACATATGTCCTCTTCTGTGATGGAGGTCTATGTATGATCC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0236E02-u8qcS/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E240060" ref_strand="+" ref_description="SGN-E240060 [cLED-32-D2]">
      <seq>catcaatacgcctcttacagagaaaacaaaaggaatgtttgacaaggaaagaattgcaaagttgaagaagggagttctaattgtaaacaatgctcgaggagcaattatggacactcaagcagttgttgatgcttgtaacagcggtcatattgcaggatacagtggagatgtttggtacccacaaccagctcccaaggaccatctatggcgttacatgccaaaccaagctatgactcctcacatttctgggactaccattgatgcacagttgaggtatgcagctggaacaaaggatatgttggacaggtacttcaagggtgaggatttccctgctgaaaattacattgtcaaggatggggaattggcacctcagtatcgctaaattatttatgtatagagttgtgtctagatttctgtgttaaataaactggcaagccgtgtcttcaataagctgataaaattggctactttatgttcttctagaactctaatgcagtttttctccgggttagctgtaacttttgtgatggaaacatatgtcctcttctgtgatggaggtctatgtatgat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0236E02-u8qcS/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0236E02.1" temp_strand="+" temp_description="C02HBa0236E02.1  AC215430.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0236E02 sequenced_by:kribb upload_account_name:korea">
        <position start="67976" stop="70232"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="68276" g_stop="68305" g_length="30"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="30" r_length="30" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="68306" i_stop="69046" i_length="741">
            <donor d_prob="0.995" d_score="0.00"/>
            <acceptor a_prob="0.768" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="69047" g_stop="69171" g_length="125"/>
          <reference_exon_boundary r_type="cDNA" r_start="31" r_stop="155" r_length="125" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="69172" i_stop="69406" i_length="235">
            <donor d_prob="0.983" d_score="1.00"/>
            <acceptor a_prob="0.964" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="69407" g_stop="69519" g_length="113"/>
          <reference_exon_boundary r_type="cDNA" r_start="156" r_stop="268" r_length="113" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="69520" i_stop="69630" i_length="111">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.989" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="69631" g_stop="69932" g_length="302"/>
          <reference_exon_boundary r_type="cDNA" r_start="269" r_stop="570" r_length="302" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0236E02.1" gen_strand="+" ref_id="SGN-E240060" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>570</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0236E02.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E240060" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="68276" e_stop="68305"/>
          <exon e_start="69047" e_stop="69171"/>
          <exon e_start="69407" e_stop="69519"/>
          <exon e_start="69631" e_stop="69932"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CATCAATACGCCTCTTACAGAGAAAACAAAGTAAGGTTTCTGTTTCTGTAATTACCCGTCGTAAACCTATACAATAATATTTATTGACAAAGCTTCTTATATTCAAGTTATTTTAACAATGACTTAATTATGAAATGAACTAAGTAAGCTAAAGTGAATATTCATTGAGAATGAAATATGATATTTAGCGAAGGGAAGGAGAATCTTTGGTGTCATCGTAATTTTTTGGTATCACTCTAGATCATATATAAAGTAGTTGTATATTTAGATTCCCCGATTGTATTCCCTAAGTTAAGAAATTCTCTTGAGCATCCACCATATACTATGATACATGACTTTGGCTAAGCTCAAAAAGACTATCTCAATGATGGCCCTCCATGGATTCTCCACCTATATAAGCCACGGCTAAAGAAAAATTGCTTGGCCAAGTTGTCTTTTACCTTTGGCATGATGCAAAAAACATTTGATATTCTTTCTGTGTGAACCACTGCTACGAGTAATATGTTCTTAGAGATCATGTTTTCTTTTTGTTCTTCCTTTAATTTTCTATTTGAAGATTTGTCATCAGTTAGAGGTCATCGGTAGGATGATAGATGTTCTCAGCAACTTGTGTTGCCAGAATAATATGATTGCCAATGGAGTATTTTTAAGATTCTTGGAGATGTAAGAGTTGTTTCTGTCCATACATCACTCTTCTCATGTCACTAAGGTCATTGATTGTTTCCATGTGCTATATCGCAAATTGCTCACAATTTTAACTATGTGATCCAGAGGAATGTTTGACAAGGAAAGAATTGCAAAGTTGAAGAAGGGAGTTCTAATTGTAAACAATGCTCGAGGAGCAATTATGGACACTCAAGCAGTTGTTGATGCTTGTAACAGCGGTCATATTGCAGGTATTTTAACATAACTTGAACACATCATCCAGAGATGAGCCCTCAGCCTTAATATCAATTGAACACACCATTATATTTTTTTCTTCAATTCTTGCTTGTTTCTTTTCTTCAATATATTTTATCGACATTTGGAAGTAGTTCCATATCTTGTGGAATTGCCGAATCCTTTGAAGAAAGAAGTACTTCTAAAACTATATTGAGTTCTTTTCTTTCGGTTATTTCCCCCCAAATTTAGGATACAGTGGAGATGTTTGGTACCCACAACCAGCTCCCAAGGACCATCTATGGCGTTACATGCCAAACCAAGCTATGACTCCTCACATTTCTGGGACTACCATTGATGCACAGGTTTGTAAATACTCTGTTTCTCTAATTTCTTTAGGCTTTGCTTTTTCTTTACTTTCACGACATTATAATTGCGATTAAACTGAGAGAAGCTTGTTACTTTCAATTTCGCAGTTGAGGTATGCAGCTGGAACAAAGGATATGTTGGACAGGTACTTCAAGGGTGAGGATTTCCCTGCTGAAAATTACATTGTCAAGGATGGGGAATTGGCACCTCAGTATCGCTAAATTATTTATGTATAGAGTTGTGTCTAGATTTCTGTGTTAAATAAACTGGCAAGCCGTGTCTTCAATAAGCTGATAAAATTGGCTACTTTATGTTCTTCTAGAACTCTAATGCAGTTTTTCTCCGGGTTAGCTGTAACTTTTGTGATGGAAACATATGTCCTCTTCTGTGATGGAGGTCTATGTATGAT</genome_strand>
        <mrna_strand>CATCAATACGCCTCTTACAGAGAAAACAAA.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGGAATGTTTGACAAGGAAAGAATTGCAAAGTTGAAGAAGGGAGTTCTAATTGTAAACAATGCTCGAGGAGCAATTATGGACACTCAAGCAGTTGTTGATGCTTGTAACAGCGGTCATATTGCAG...........................................................................................................................................................................................................................................GATACAGTGGAGATGTTTGGTACCCACAACCAGCTCCCAAGGACCATCTATGGCGTTACATGCCAAACCAAGCTATGACTCCTCACATTTCTGGGACTACCATTGATGCACAG...............................................................................................................TTGAGGTATGCAGCTGGAACAAAGGATATGTTGGACAGGTACTTCAAGGGTGAGGATTTCCCTGCTGAAAATTACATTGTCAAGGATGGGGAATTGGCACCTCAGTATCGCTAAATTATTTATGTATAGAGTTGTGTCTAGATTTCTGTGTTAAATAAACTGGCAAGCCGTGTCTTCAATAAGCTGATAAAATTGGCTACTTTATGTTCTTCTAGAACTCTAATGCAGTTTTTCTCCGGGTTAGCTGTAACTTTTGTGATGGAAACATATGTCCTCTTCTGTGATGGAGGTCTATGTATGAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0236E02-u8qcS/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E242655" ref_strand="+" ref_description="SGN-E242655 [cLED-30-B11]">
      <seq>catcaatacgcctcttacagagaaaacaaaaggaatgtttgacaaggaaagaattgcaaagttgaagaagggagttctaattgtaaacaatgctcgaggagcaattatggacactcaagcagttgttgatgcttgtaacagcggtcatattgcaggatacagtggagatgtttggtacccacaaccagctcccaaggaccatctatggcgttacatgccaaaccaagctatgactcctcacatttctgggactaccattgatgcacagttgaggtatgcagctggaacaaaggatatgttggacaggtacttcaagggtgaggatttccctgctgaaaattacattgtcaaggatggggaattggcacctcagtatcgctaaattatttatgtatagagttgtgtctagatttctgtgttaaataaactggcaagccgtgtcttcaataagctgataaaattg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0236E02-u8qcS/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0236E02.1" temp_strand="+" temp_description="C02HBa0236E02.1  AC215430.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0236E02 sequenced_by:kribb upload_account_name:korea">
        <position start="67976" stop="70125"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="68276" g_stop="68305" g_length="30"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="30" r_length="30" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="68306" i_stop="69046" i_length="741">
            <donor d_prob="0.995" d_score="0.00"/>
            <acceptor a_prob="0.768" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="69047" g_stop="69171" g_length="125"/>
          <reference_exon_boundary r_type="cDNA" r_start="31" r_stop="155" r_length="125" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="69172" i_stop="69406" i_length="235">
            <donor d_prob="0.983" d_score="1.00"/>
            <acceptor a_prob="0.964" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="69407" g_stop="69519" g_length="113"/>
          <reference_exon_boundary r_type="cDNA" r_start="156" r_stop="268" r_length="113" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="69520" i_stop="69630" i_length="111">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.989" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="69631" g_stop="69825" g_length="195"/>
          <reference_exon_boundary r_type="cDNA" r_start="269" r_stop="463" r_length="195" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0236E02.1" gen_strand="+" ref_id="SGN-E242655" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>463</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0236E02.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E242655" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="68276" e_stop="68305"/>
          <exon e_start="69047" e_stop="69171"/>
          <exon e_start="69407" e_stop="69519"/>
          <exon e_start="69631" e_stop="69825"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CATCAATACGCCTCTTACAGAGAAAACAAAGTAAGGTTTCTGTTTCTGTAATTACCCGTCGTAAACCTATACAATAATATTTATTGACAAAGCTTCTTATATTCAAGTTATTTTAACAATGACTTAATTATGAAATGAACTAAGTAAGCTAAAGTGAATATTCATTGAGAATGAAATATGATATTTAGCGAAGGGAAGGAGAATCTTTGGTGTCATCGTAATTTTTTGGTATCACTCTAGATCATATATAAAGTAGTTGTATATTTAGATTCCCCGATTGTATTCCCTAAGTTAAGAAATTCTCTTGAGCATCCACCATATACTATGATACATGACTTTGGCTAAGCTCAAAAAGACTATCTCAATGATGGCCCTCCATGGATTCTCCACCTATATAAGCCACGGCTAAAGAAAAATTGCTTGGCCAAGTTGTCTTTTACCTTTGGCATGATGCAAAAAACATTTGATATTCTTTCTGTGTGAACCACTGCTACGAGTAATATGTTCTTAGAGATCATGTTTTCTTTTTGTTCTTCCTTTAATTTTCTATTTGAAGATTTGTCATCAGTTAGAGGTCATCGGTAGGATGATAGATGTTCTCAGCAACTTGTGTTGCCAGAATAATATGATTGCCAATGGAGTATTTTTAAGATTCTTGGAGATGTAAGAGTTGTTTCTGTCCATACATCACTCTTCTCATGTCACTAAGGTCATTGATTGTTTCCATGTGCTATATCGCAAATTGCTCACAATTTTAACTATGTGATCCAGAGGAATGTTTGACAAGGAAAGAATTGCAAAGTTGAAGAAGGGAGTTCTAATTGTAAACAATGCTCGAGGAGCAATTATGGACACTCAAGCAGTTGTTGATGCTTGTAACAGCGGTCATATTGCAGGTATTTTAACATAACTTGAACACATCATCCAGAGATGAGCCCTCAGCCTTAATATCAATTGAACACACCATTATATTTTTTTCTTCAATTCTTGCTTGTTTCTTTTCTTCAATATATTTTATCGACATTTGGAAGTAGTTCCATATCTTGTGGAATTGCCGAATCCTTTGAAGAAAGAAGTACTTCTAAAACTATATTGAGTTCTTTTCTTTCGGTTATTTCCCCCCAAATTTAGGATACAGTGGAGATGTTTGGTACCCACAACCAGCTCCCAAGGACCATCTATGGCGTTACATGCCAAACCAAGCTATGACTCCTCACATTTCTGGGACTACCATTGATGCACAGGTTTGTAAATACTCTGTTTCTCTAATTTCTTTAGGCTTTGCTTTTTCTTTACTTTCACGACATTATAATTGCGATTAAACTGAGAGAAGCTTGTTACTTTCAATTTCGCAGTTGAGGTATGCAGCTGGAACAAAGGATATGTTGGACAGGTACTTCAAGGGTGAGGATTTCCCTGCTGAAAATTACATTGTCAAGGATGGGGAATTGGCACCTCAGTATCGCTAAATTATTTATGTATAGAGTTGTGTCTAGATTTCTGTGTTAAATAAACTGGCAAGCCGTGTCTTCAATAAGCTGATAAAATTG</genome_strand>
        <mrna_strand>CATCAATACGCCTCTTACAGAGAAAACAAA.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGGAATGTTTGACAAGGAAAGAATTGCAAAGTTGAAGAAGGGAGTTCTAATTGTAAACAATGCTCGAGGAGCAATTATGGACACTCAAGCAGTTGTTGATGCTTGTAACAGCGGTCATATTGCAG...........................................................................................................................................................................................................................................GATACAGTGGAGATGTTTGGTACCCACAACCAGCTCCCAAGGACCATCTATGGCGTTACATGCCAAACCAAGCTATGACTCCTCACATTTCTGGGACTACCATTGATGCACAG...............................................................................................................TTGAGGTATGCAGCTGGAACAAAGGATATGTTGGACAGGTACTTCAAGGGTGAGGATTTCCCTGCTGAAAATTACATTGTCAAGGATGGGGAATTGGCACCTCAGTATCGCTAAATTATTTATGTATAGAGTTGTGTCTAGATTTCTGTGTTAAATAAACTGGCAAGCCGTGTCTTCAATAAGCTGATAAAATTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0236E02-u8qcS/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E242080" ref_strand="+" ref_description="SGN-E242080 [cLED-37-A19]">
      <seq>catcaatactcctcttacagagaaaacaaaaggaatgtttgacaaggaaagaattgcgaagttgaagaagggagttctaattgtaaacaatgctcgaggagcaattatggacactcaagccgttgttgatgcttgtaacagcggtcatattgcaggatacagtggagatgtttggtacccacaaccagctcccaaggaccatctatggcgttacatgccaaaccaagctatgactcctcacatttctgggactaccattgatgcacagttgaggtatgcagctggaacaaaggatatgttggacaggtacttcaagggtgaggatttccctgctgaaaattacattgtcaaggatggggaattggcacctcagtatcgctaaattatttatgtataga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0236E02-u8qcS/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0236E02.1" temp_strand="+" temp_description="C02HBa0236E02.1  AC215430.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0236E02 sequenced_by:kribb upload_account_name:korea">
        <position start="67976" stop="70060"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="68276" g_stop="68305" g_length="30"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="30" r_length="30" r_score="0.967"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="68306" i_stop="69046" i_length="741">
            <donor d_prob="0.995" d_score="0.00"/>
            <acceptor a_prob="0.768" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="69047" g_stop="69171" g_length="125"/>
          <reference_exon_boundary r_type="cDNA" r_start="31" r_stop="155" r_length="125" r_score="0.984"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="69172" i_stop="69406" i_length="235">
            <donor d_prob="0.983" d_score="0.98"/>
            <acceptor a_prob="0.964" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="69407" g_stop="69519" g_length="113"/>
          <reference_exon_boundary r_type="cDNA" r_start="156" r_stop="268" r_length="113" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="69520" i_stop="69630" i_length="111">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.989" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="69631" g_stop="69760" g_length="130"/>
          <reference_exon_boundary r_type="cDNA" r_start="269" r_stop="398" r_length="130" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0236E02.1" gen_strand="+" ref_id="SGN-E242080" ref_strand="+">
        <total_alignment_score>0.995</total_alignment_score>
        <cumulative_length_of_scored_exons>398</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0236E02.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E242080" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="68276" e_stop="68305"/>
          <exon e_start="69047" e_stop="69171"/>
          <exon e_start="69407" e_stop="69519"/>
          <exon e_start="69631" e_stop="69760"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CATCAATACGCCTCTTACAGAGAAAACAAAGTAAGGTTTCTGTTTCTGTAATTACCCGTCGTAAACCTATACAATAATATTTATTGACAAAGCTTCTTATATTCAAGTTATTTTAACAATGACTTAATTATGAAATGAACTAAGTAAGCTAAAGTGAATATTCATTGAGAATGAAATATGATATTTAGCGAAGGGAAGGAGAATCTTTGGTGTCATCGTAATTTTTTGGTATCACTCTAGATCATATATAAAGTAGTTGTATATTTAGATTCCCCGATTGTATTCCCTAAGTTAAGAAATTCTCTTGAGCATCCACCATATACTATGATACATGACTTTGGCTAAGCTCAAAAAGACTATCTCAATGATGGCCCTCCATGGATTCTCCACCTATATAAGCCACGGCTAAAGAAAAATTGCTTGGCCAAGTTGTCTTTTACCTTTGGCATGATGCAAAAAACATTTGATATTCTTTCTGTGTGAACCACTGCTACGAGTAATATGTTCTTAGAGATCATGTTTTCTTTTTGTTCTTCCTTTAATTTTCTATTTGAAGATTTGTCATCAGTTAGAGGTCATCGGTAGGATGATAGATGTTCTCAGCAACTTGTGTTGCCAGAATAATATGATTGCCAATGGAGTATTTTTAAGATTCTTGGAGATGTAAGAGTTGTTTCTGTCCATACATCACTCTTCTCATGTCACTAAGGTCATTGATTGTTTCCATGTGCTATATCGCAAATTGCTCACAATTTTAACTATGTGATCCAGAGGAATGTTTGACAAGGAAAGAATTGCAAAGTTGAAGAAGGGAGTTCTAATTGTAAACAATGCTCGAGGAGCAATTATGGACACTCAAGCAGTTGTTGATGCTTGTAACAGCGGTCATATTGCAGGTATTTTAACATAACTTGAACACATCATCCAGAGATGAGCCCTCAGCCTTAATATCAATTGAACACACCATTATATTTTTTTCTTCAATTCTTGCTTGTTTCTTTTCTTCAATATATTTTATCGACATTTGGAAGTAGTTCCATATCTTGTGGAATTGCCGAATCCTTTGAAGAAAGAAGTACTTCTAAAACTATATTGAGTTCTTTTCTTTCGGTTATTTCCCCCCAAATTTAGGATACAGTGGAGATGTTTGGTACCCACAACCAGCTCCCAAGGACCATCTATGGCGTTACATGCCAAACCAAGCTATGACTCCTCACATTTCTGGGACTACCATTGATGCACAGGTTTGTAAATACTCTGTTTCTCTAATTTCTTTAGGCTTTGCTTTTTCTTTACTTTCACGACATTATAATTGCGATTAAACTGAGAGAAGCTTGTTACTTTCAATTTCGCAGTTGAGGTATGCAGCTGGAACAAAGGATATGTTGGACAGGTACTTCAAGGGTGAGGATTTCCCTGCTGAAAATTACATTGTCAAGGATGGGGAATTGGCACCTCAGTATCGCTAAATTATTTATGTATAGA</genome_strand>
        <mrna_strand>CATCAATACTCCTCTTACAGAGAAAACAAA.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGGAATGTTTGACAAGGAAAGAATTGCGAAGTTGAAGAAGGGAGTTCTAATTGTAAACAATGCTCGAGGAGCAATTATGGACACTCAAGCCGTTGTTGATGCTTGTAACAGCGGTCATATTGCAG...........................................................................................................................................................................................................................................GATACAGTGGAGATGTTTGGTACCCACAACCAGCTCCCAAGGACCATCTATGGCGTTACATGCCAAACCAAGCTATGACTCCTCACATTTCTGGGACTACCATTGATGCACAG...............................................................................................................TTGAGGTATGCAGCTGGAACAAAGGATATGTTGGACAGGTACTTCAAGGGTGAGGATTTCCCTGCTGAAAATTACATTGTCAAGGATGGGGAATTGGCACCTCAGTATCGCTAAATTATTTATGTATAGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0236E02-u8qcS/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E240970" ref_strand="+" ref_description="SGN-E240970 [cLED-24-F15]">
      <seq>catcaatacgcctcttacagagaaaacaaaaggaatgtttgacaaggaaagaattgcaaagttgaagaagggagttctaattgtaaacaatgctcgaggagcaattatggacactcaagcagttgttgatgcttgtaacagcggtcatattgcatgatacagtggagatgtttggtacccacaaccagctcccaaggaccatctatggcgttacatgccaaaccaagctatgactcctcacatttctgggactaccattgatgcacagttgaggtatgcagctggaacaaaggatatgttggacaggtacttcaagggtgaggatttccctgctgaaaattacattgtcaaggatggggaat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0236E02-u8qcS/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0236E02.1" temp_strand="+" temp_description="C02HBa0236E02.1  AC215430.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0236E02 sequenced_by:kribb upload_account_name:korea">
        <position start="67976" stop="70024"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="68276" g_stop="68305" g_length="30"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="30" r_length="30" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="68306" i_stop="69046" i_length="741">
            <donor d_prob="0.995" d_score="0.00"/>
            <acceptor a_prob="0.768" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="69047" g_stop="69171" g_length="125"/>
          <reference_exon_boundary r_type="cDNA" r_start="31" r_stop="155" r_length="125" r_score="0.992"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="69172" i_stop="69406" i_length="235">
            <donor d_prob="0.983" d_score="0.98"/>
            <acceptor a_prob="0.964" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="69407" g_stop="69519" g_length="113"/>
          <reference_exon_boundary r_type="cDNA" r_start="156" r_stop="268" r_length="113" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="69520" i_stop="69630" i_length="111">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.989" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="69631" g_stop="69724" g_length="94"/>
          <reference_exon_boundary r_type="cDNA" r_start="269" r_stop="362" r_length="94" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0236E02.1" gen_strand="+" ref_id="SGN-E240970" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>362</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0236E02.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E240970" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="68276" e_stop="68305"/>
          <exon e_start="69047" e_stop="69171"/>
          <exon e_start="69407" e_stop="69519"/>
          <exon e_start="69631" e_stop="69724"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CATCAATACGCCTCTTACAGAGAAAACAAAGTAAGGTTTCTGTTTCTGTAATTACCCGTCGTAAACCTATACAATAATATTTATTGACAAAGCTTCTTATATTCAAGTTATTTTAACAATGACTTAATTATGAAATGAACTAAGTAAGCTAAAGTGAATATTCATTGAGAATGAAATATGATATTTAGCGAAGGGAAGGAGAATCTTTGGTGTCATCGTAATTTTTTGGTATCACTCTAGATCATATATAAAGTAGTTGTATATTTAGATTCCCCGATTGTATTCCCTAAGTTAAGAAATTCTCTTGAGCATCCACCATATACTATGATACATGACTTTGGCTAAGCTCAAAAAGACTATCTCAATGATGGCCCTCCATGGATTCTCCACCTATATAAGCCACGGCTAAAGAAAAATTGCTTGGCCAAGTTGTCTTTTACCTTTGGCATGATGCAAAAAACATTTGATATTCTTTCTGTGTGAACCACTGCTACGAGTAATATGTTCTTAGAGATCATGTTTTCTTTTTGTTCTTCCTTTAATTTTCTATTTGAAGATTTGTCATCAGTTAGAGGTCATCGGTAGGATGATAGATGTTCTCAGCAACTTGTGTTGCCAGAATAATATGATTGCCAATGGAGTATTTTTAAGATTCTTGGAGATGTAAGAGTTGTTTCTGTCCATACATCACTCTTCTCATGTCACTAAGGTCATTGATTGTTTCCATGTGCTATATCGCAAATTGCTCACAATTTTAACTATGTGATCCAGAGGAATGTTTGACAAGGAAAGAATTGCAAAGTTGAAGAAGGGAGTTCTAATTGTAAACAATGCTCGAGGAGCAATTATGGACACTCAAGCAGTTGTTGATGCTTGTAACAGCGGTCATATTGCAGGTATTTTAACATAACTTGAACACATCATCCAGAGATGAGCCCTCAGCCTTAATATCAATTGAACACACCATTATATTTTTTTCTTCAATTCTTGCTTGTTTCTTTTCTTCAATATATTTTATCGACATTTGGAAGTAGTTCCATATCTTGTGGAATTGCCGAATCCTTTGAAGAAAGAAGTACTTCTAAAACTATATTGAGTTCTTTTCTTTCGGTTATTTCCCCCCAAATTTAGGATACAGTGGAGATGTTTGGTACCCACAACCAGCTCCCAAGGACCATCTATGGCGTTACATGCCAAACCAAGCTATGACTCCTCACATTTCTGGGACTACCATTGATGCACAGGTTTGTAAATACTCTGTTTCTCTAATTTCTTTAGGCTTTGCTTTTTCTTTACTTTCACGACATTATAATTGCGATTAAACTGAGAGAAGCTTGTTACTTTCAATTTCGCAGTTGAGGTATGCAGCTGGAACAAAGGATATGTTGGACAGGTACTTCAAGGGTGAGGATTTCCCTGCTGAAAATTACATTGTCAAGGATGGGGAAT</genome_strand>
        <mrna_strand>CATCAATACGCCTCTTACAGAGAAAACAAA.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGGAATGTTTGACAAGGAAAGAATTGCAAAGTTGAAGAAGGGAGTTCTAATTGTAAACAATGCTCGAGGAGCAATTATGGACACTCAAGCAGTTGTTGATGCTTGTAACAGCGGTCATATTGCAT...........................................................................................................................................................................................................................................GATACAGTGGAGATGTTTGGTACCCACAACCAGCTCCCAAGGACCATCTATGGCGTTACATGCCAAACCAAGCTATGACTCCTCACATTTCTGGGACTACCATTGATGCACAG...............................................................................................................TTGAGGTATGCAGCTGGAACAAAGGATATGTTGGACAGGTACTTCAAGGGTGAGGATTTCCCTGCTGAAAATTACATTGTCAAGGATGGGGAAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0236E02-u8qcS/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E233512" ref_strand="+" ref_description="SGN-E233512 [cLED-9-A2]">
      <seq>catcaatacgcctcttacagagaaaacaaaaggaatgtttgacaaggaaagaattgcaaagttgaagaagggagttctaattgtaaacaatgctcgaggagcaattatggacactcaagcagttgttgatgcttgtaacagcggtcatattgcaggatacagtggagatgtttggtacccaca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0236E02-u8qcS/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0236E02.1" temp_strand="+" temp_description="C02HBa0236E02.1  AC215430.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0236E02 sequenced_by:kribb upload_account_name:korea">
        <position start="67976" stop="69734"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="68276" g_stop="68305" g_length="30"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="30" r_length="30" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="68306" i_stop="69046" i_length="741">
            <donor d_prob="0.995" d_score="0.00"/>
            <acceptor a_prob="0.768" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="69047" g_stop="69171" g_length="125"/>
          <reference_exon_boundary r_type="cDNA" r_start="31" r_stop="155" r_length="125" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="69172" i_stop="69406" i_length="235">
            <donor d_prob="0.983" d_score="1.00"/>
            <acceptor a_prob="0.964" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="69407" g_stop="69434" g_length="28"/>
          <reference_exon_boundary r_type="cDNA" r_start="156" r_stop="183" r_length="28" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0236E02.1" gen_strand="+" ref_id="SGN-E233512" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>183</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0236E02.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E233512" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="68276" e_stop="68305"/>
          <exon e_start="69047" e_stop="69171"/>
          <exon e_start="69407" e_stop="69434"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CATCAATACGCCTCTTACAGAGAAAACAAAGTAAGGTTTCTGTTTCTGTAATTACCCGTCGTAAACCTATACAATAATATTTATTGACAAAGCTTCTTATATTCAAGTTATTTTAACAATGACTTAATTATGAAATGAACTAAGTAAGCTAAAGTGAATATTCATTGAGAATGAAATATGATATTTAGCGAAGGGAAGGAGAATCTTTGGTGTCATCGTAATTTTTTGGTATCACTCTAGATCATATATAAAGTAGTTGTATATTTAGATTCCCCGATTGTATTCCCTAAGTTAAGAAATTCTCTTGAGCATCCACCATATACTATGATACATGACTTTGGCTAAGCTCAAAAAGACTATCTCAATGATGGCCCTCCATGGATTCTCCACCTATATAAGCCACGGCTAAAGAAAAATTGCTTGGCCAAGTTGTCTTTTACCTTTGGCATGATGCAAAAAACATTTGATATTCTTTCTGTGTGAACCACTGCTACGAGTAATATGTTCTTAGAGATCATGTTTTCTTTTTGTTCTTCCTTTAATTTTCTATTTGAAGATTTGTCATCAGTTAGAGGTCATCGGTAGGATGATAGATGTTCTCAGCAACTTGTGTTGCCAGAATAATATGATTGCCAATGGAGTATTTTTAAGATTCTTGGAGATGTAAGAGTTGTTTCTGTCCATACATCACTCTTCTCATGTCACTAAGGTCATTGATTGTTTCCATGTGCTATATCGCAAATTGCTCACAATTTTAACTATGTGATCCAGAGGAATGTTTGACAAGGAAAGAATTGCAAAGTTGAAGAAGGGAGTTCTAATTGTAAACAATGCTCGAGGAGCAATTATGGACACTCAAGCAGTTGTTGATGCTTGTAACAGCGGTCATATTGCAGGTATTTTAACATAACTTGAACACATCATCCAGAGATGAGCCCTCAGCCTTAATATCAATTGAACACACCATTATATTTTTTTCTTCAATTCTTGCTTGTTTCTTTTCTTCAATATATTTTATCGACATTTGGAAGTAGTTCCATATCTTGTGGAATTGCCGAATCCTTTGAAGAAAGAAGTACTTCTAAAACTATATTGAGTTCTTTTCTTTCGGTTATTTCCCCCCAAATTTAGGATACAGTGGAGATGTTTGGTACCCACA</genome_strand>
        <mrna_strand>CATCAATACGCCTCTTACAGAGAAAACAAA.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGGAATGTTTGACAAGGAAAGAATTGCAAAGTTGAAGAAGGGAGTTCTAATTGTAAACAATGCTCGAGGAGCAATTATGGACACTCAAGCAGTTGTTGATGCTTGTAACAGCGGTCATATTGCAG...........................................................................................................................................................................................................................................GATACAGTGGAGATGTTTGGTACCCACA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0236E02-u8qcS/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E353837" ref_strand="+" ref_description="SGN-E353837 [cTOS-10-J3]">
      <seq>atcaatacgcctcttacagagaaaacaaaaggaatgtttgacaaggaaagaattgcaaagttgaagaagggagttctaattgtaaacaatgctcgaggagcaattatggacactcaagcagttgttgatgcttgtaacagcggtcatattgcaggatacagtggagatgtttggtacccacaaccagctcccaaggaccatctatggcgttacatgccaaaccaagctatgactcctcacatttctgggactaccattgatgcacagttgaggtatgcagctggaacaaaggatatgttggacaggtacttcaagggtgaggatttccctgctgaaaattacattgtcaaggatggggaattggcacctcagtatcgctaaattatttatgtatagagttgtgtctagatttctgtgttaaataaactggcaagccgtgtcttcaataagctgataaaattggctactttatgttcttctagaactctaatgcagtttttctccgggttagctgtaacttttgtgatggaaacatatgtcctcttctgtgatggaggtctatgtatgatcctccagtgtctttcttgagtctataactgaacttccttgctgtggtagttgtactggtgttcctggacattttatgtttt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0236E02-u8qcS/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0236E02.1" temp_strand="+" temp_description="C02HBa0236E02.1  AC215430.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0236E02 sequenced_by:kribb upload_account_name:korea">
        <position start="67977" stop="70313"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="68277" g_stop="68305" g_length="29"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="29" r_length="29" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="68306" i_stop="69046" i_length="741">
            <donor d_prob="0.995" d_score="0.00"/>
            <acceptor a_prob="0.768" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="69047" g_stop="69171" g_length="125"/>
          <reference_exon_boundary r_type="cDNA" r_start="30" r_stop="154" r_length="125" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="69172" i_stop="69406" i_length="235">
            <donor d_prob="0.983" d_score="1.00"/>
            <acceptor a_prob="0.964" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="69407" g_stop="69519" g_length="113"/>
          <reference_exon_boundary r_type="cDNA" r_start="155" r_stop="267" r_length="113" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="69520" i_stop="69630" i_length="111">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.989" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="69631" g_stop="70013" g_length="383"/>
          <reference_exon_boundary r_type="cDNA" r_start="268" r_stop="650" r_length="383" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0236E02.1" gen_strand="+" ref_id="SGN-E353837" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>650</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0236E02.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E353837" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="68277" e_stop="68305"/>
          <exon e_start="69047" e_stop="69171"/>
          <exon e_start="69407" e_stop="69519"/>
          <exon e_start="69631" e_stop="70013"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATCAATACGCCTCTTACAGAGAAAACAAAGTAAGGTTTCTGTTTCTGTAATTACCCGTCGTAAACCTATACAATAATATTTATTGACAAAGCTTCTTATATTCAAGTTATTTTAACAATGACTTAATTATGAAATGAACTAAGTAAGCTAAAGTGAATATTCATTGAGAATGAAATATGATATTTAGCGAAGGGAAGGAGAATCTTTGGTGTCATCGTAATTTTTTGGTATCACTCTAGATCATATATAAAGTAGTTGTATATTTAGATTCCCCGATTGTATTCCCTAAGTTAAGAAATTCTCTTGAGCATCCACCATATACTATGATACATGACTTTGGCTAAGCTCAAAAAGACTATCTCAATGATGGCCCTCCATGGATTCTCCACCTATATAAGCCACGGCTAAAGAAAAATTGCTTGGCCAAGTTGTCTTTTACCTTTGGCATGATGCAAAAAACATTTGATATTCTTTCTGTGTGAACCACTGCTACGAGTAATATGTTCTTAGAGATCATGTTTTCTTTTTGTTCTTCCTTTAATTTTCTATTTGAAGATTTGTCATCAGTTAGAGGTCATCGGTAGGATGATAGATGTTCTCAGCAACTTGTGTTGCCAGAATAATATGATTGCCAATGGAGTATTTTTAAGATTCTTGGAGATGTAAGAGTTGTTTCTGTCCATACATCACTCTTCTCATGTCACTAAGGTCATTGATTGTTTCCATGTGCTATATCGCAAATTGCTCACAATTTTAACTATGTGATCCAGAGGAATGTTTGACAAGGAAAGAATTGCAAAGTTGAAGAAGGGAGTTCTAATTGTAAACAATGCTCGAGGAGCAATTATGGACACTCAAGCAGTTGTTGATGCTTGTAACAGCGGTCATATTGCAGGTATTTTAACATAACTTGAACACATCATCCAGAGATGAGCCCTCAGCCTTAATATCAATTGAACACACCATTATATTTTTTTCTTCAATTCTTGCTTGTTTCTTTTCTTCAATATATTTTATCGACATTTGGAAGTAGTTCCATATCTTGTGGAATTGCCGAATCCTTTGAAGAAAGAAGTACTTCTAAAACTATATTGAGTTCTTTTCTTTCGGTTATTTCCCCCCAAATTTAGGATACAGTGGAGATGTTTGGTACCCACAACCAGCTCCCAAGGACCATCTATGGCGTTACATGCCAAACCAAGCTATGACTCCTCACATTTCTGGGACTACCATTGATGCACAGGTTTGTAAATACTCTGTTTCTCTAATTTCTTTAGGCTTTGCTTTTTCTTTACTTTCACGACATTATAATTGCGATTAAACTGAGAGAAGCTTGTTACTTTCAATTTCGCAGTTGAGGTATGCAGCTGGAACAAAGGATATGTTGGACAGGTACTTCAAGGGTGAGGATTTCCCTGCTGAAAATTACATTGTCAAGGATGGGGAATTGGCACCTCAGTATCGCTAAATTATTTATGTATAGAGTTGTGTCTAGATTTCTGTGTTAAATAAACTGGCAAGCCGTGTCTTCAATAAGCTGATAAAATTGGCTACTTTATGTTCTTCTAGAACTCTAATGCAGTTTTTCTCCGGGTTAGCTGTAACTTTTGTGATGGAAACATATGTCCTCTTCTGTGATGGAGGTCTATGTATGATCCTCCAGTGTCTTTCTTGAGTCTATAACTGAACTTCCTTGCTGTGGTAGTTGTACTGGTGTTCCTGGACATTTTATGTTTT</genome_strand>
        <mrna_strand>ATCAATACGCCTCTTACAGAGAAAACAAA.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGGAATGTTTGACAAGGAAAGAATTGCAAAGTTGAAGAAGGGAGTTCTAATTGTAAACAATGCTCGAGGAGCAATTATGGACACTCAAGCAGTTGTTGATGCTTGTAACAGCGGTCATATTGCAG...........................................................................................................................................................................................................................................GATACAGTGGAGATGTTTGGTACCCACAACCAGCTCCCAAGGACCATCTATGGCGTTACATGCCAAACCAAGCTATGACTCCTCACATTTCTGGGACTACCATTGATGCACAG...............................................................................................................TTGAGGTATGCAGCTGGAACAAAGGATATGTTGGACAGGTACTTCAAGGGTGAGGATTTCCCTGCTGAAAATTACATTGTCAAGGATGGGGAATTGGCACCTCAGTATCGCTAAATTATTTATGTATAGAGTTGTGTCTAGATTTCTGTGTTAAATAAACTGGCAAGCCGTGTCTTCAATAAGCTGATAAAATTGGCTACTTTATGTTCTTCTAGAACTCTAATGCAGTTTTTCTCCGGGTTAGCTGTAACTTTTGTGATGGAAACATATGTCCTCTTCTGTGATGGAGGTCTATGTATGATCCTCCAGTGTCTTTCTTGAGTCTATAACTGAACTTCCTTGCTGTGGTAGTTGTACTGGTGTTCCTGGACATTTTATGTTTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0236E02-u8qcS/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E238057" ref_strand="+" ref_description="SGN-E238057 [cLED-22-C19]">
      <seq>atcaatacgcctcttacagagaaaacaaaaggaatgtttgacaaggaaagaattgcaaagttgaagaaaggagttctaattgtaaacaatgctcgaggagcaattatggacactcaatcagctgttgatgcttgtaacatcggtcatattgcaagatacagtggagatgtttggcacccacaaccagctcccaaggaccatctatggcgttacatgccaaaccaagctatgactcctcacatttctgggactaccattgatgcacagttgaggtatgcagctggaacaaaggatatgttggacaggtacttcaagggtgaggatttccctgctgaaaattacattgtcaaggatggggaattggcacc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0236E02-u8qcS/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0236E02.1" temp_strand="+" temp_description="C02HBa0236E02.1  AC215430.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0236E02 sequenced_by:kribb upload_account_name:korea">
        <position start="67977" stop="70031"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="68277" g_stop="68305" g_length="29"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="29" r_length="29" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="68306" i_stop="69046" i_length="741">
            <donor d_prob="0.995" d_score="0.00"/>
            <acceptor a_prob="0.768" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="69047" g_stop="69171" g_length="125"/>
          <reference_exon_boundary r_type="cDNA" r_start="30" r_stop="154" r_length="125" r_score="0.960"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="69172" i_stop="69406" i_length="235">
            <donor d_prob="0.983" d_score="0.92"/>
            <acceptor a_prob="0.964" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="69407" g_stop="69519" g_length="113"/>
          <reference_exon_boundary r_type="cDNA" r_start="155" r_stop="267" r_length="113" r_score="0.991"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="69520" i_stop="69630" i_length="111">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.989" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="69631" g_stop="69731" g_length="101"/>
          <reference_exon_boundary r_type="cDNA" r_start="268" r_stop="368" r_length="101" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0236E02.1" gen_strand="+" ref_id="SGN-E238057" ref_strand="+">
        <total_alignment_score>0.982</total_alignment_score>
        <cumulative_length_of_scored_exons>368</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0236E02.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E238057" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="68277" e_stop="68305"/>
          <exon e_start="69047" e_stop="69171"/>
          <exon e_start="69407" e_stop="69519"/>
          <exon e_start="69631" e_stop="69731"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATCAATACGCCTCTTACAGAGAAAACAAAGTAAGGTTTCTGTTTCTGTAATTACCCGTCGTAAACCTATACAATAATATTTATTGACAAAGCTTCTTATATTCAAGTTATTTTAACAATGACTTAATTATGAAATGAACTAAGTAAGCTAAAGTGAATATTCATTGAGAATGAAATATGATATTTAGCGAAGGGAAGGAGAATCTTTGGTGTCATCGTAATTTTTTGGTATCACTCTAGATCATATATAAAGTAGTTGTATATTTAGATTCCCCGATTGTATTCCCTAAGTTAAGAAATTCTCTTGAGCATCCACCATATACTATGATACATGACTTTGGCTAAGCTCAAAAAGACTATCTCAATGATGGCCCTCCATGGATTCTCCACCTATATAAGCCACGGCTAAAGAAAAATTGCTTGGCCAAGTTGTCTTTTACCTTTGGCATGATGCAAAAAACATTTGATATTCTTTCTGTGTGAACCACTGCTACGAGTAATATGTTCTTAGAGATCATGTTTTCTTTTTGTTCTTCCTTTAATTTTCTATTTGAAGATTTGTCATCAGTTAGAGGTCATCGGTAGGATGATAGATGTTCTCAGCAACTTGTGTTGCCAGAATAATATGATTGCCAATGGAGTATTTTTAAGATTCTTGGAGATGTAAGAGTTGTTTCTGTCCATACATCACTCTTCTCATGTCACTAAGGTCATTGATTGTTTCCATGTGCTATATCGCAAATTGCTCACAATTTTAACTATGTGATCCAGAGGAATGTTTGACAAGGAAAGAATTGCAAAGTTGAAGAAGGGAGTTCTAATTGTAAACAATGCTCGAGGAGCAATTATGGACACTCAAGCAGTTGTTGATGCTTGTAACAGCGGTCATATTGCAGGTATTTTAACATAACTTGAACACATCATCCAGAGATGAGCCCTCAGCCTTAATATCAATTGAACACACCATTATATTTTTTTCTTCAATTCTTGCTTGTTTCTTTTCTTCAATATATTTTATCGACATTTGGAAGTAGTTCCATATCTTGTGGAATTGCCGAATCCTTTGAAGAAAGAAGTACTTCTAAAACTATATTGAGTTCTTTTCTTTCGGTTATTTCCCCCCAAATTTAGGATACAGTGGAGATGTTTGGTACCCACAACCAGCTCCCAAGGACCATCTATGGCGTTACATGCCAAACCAAGCTATGACTCCTCACATTTCTGGGACTACCATTGATGCACAGGTTTGTAAATACTCTGTTTCTCTAATTTCTTTAGGCTTTGCTTTTTCTTTACTTTCACGACATTATAATTGCGATTAAACTGAGAGAAGCTTGTTACTTTCAATTTCGCAGTTGAGGTATGCAGCTGGAACAAAGGATATGTTGGACAGGTACTTCAAGGGTGAGGATTTCCCTGCTGAAAATTACATTGTCAAGGATGGGGAATTGGCACC</genome_strand>
        <mrna_strand>ATCAATACGCCTCTTACAGAGAAAACAAA.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGGAATGTTTGACAAGGAAAGAATTGCAAAGTTGAAGAAAGGAGTTCTAATTGTAAACAATGCTCGAGGAGCAATTATGGACACTCAATCAGCTGTTGATGCTTGTAACATCGGTCATATTGCAA...........................................................................................................................................................................................................................................GATACAGTGGAGATGTTTGGCACCCACAACCAGCTCCCAAGGACCATCTATGGCGTTACATGCCAAACCAAGCTATGACTCCTCACATTTCTGGGACTACCATTGATGCACAG...............................................................................................................TTGAGGTATGCAGCTGGAACAAAGGATATGTTGGACAGGTACTTCAAGGGTGAGGATTTCCCTGCTGAAAATTACATTGTCAAGGATGGGGAATTGGCACC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0236E02-u8qcS/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E552969" ref_strand="+" ref_description="SGN-E552969 [cTSB-5-J5]">
      <seq>gtggatcccccgggctgcaggctcttacagagaaaacaaaaggaatgtttgacaaggaaagaattgcaaagttgaagaagggagttctaattgtaaacaatgctcgaggagcaattatggacactcaagcagttgttgatgcttgtaacagcggtcatattgcaggatacagtggagatgtttggtacccacaaccagctcccaaggaccatctatggcgttacatgccaaaccaagctatgactcctcacatttctgggactaccattgatgcacagttgaggtatgcagctggaacaaaggatatgttggacaggtacttcaagggtgaggatttccctgctgaaaattacattgtcaaggatggggaattggcacctcagtatcgctaaattatttatgtatagagttgtgtctagatttctgtgttaaataaactggcaagccgtgtcttcaataagctgataaaattggctactttatgttcttctagaactctaatgcagtttttctccgggttagctgtaacttttgtgatggaaacatatgtcctcttctgtgatggaggtctatgtatgatcctccagtgtctttcttgagtctataactgaacttccttgctgtggtaaaaaaaaaaaaaaaaaaaataaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0236E02-u8qcS/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0236E02.1" temp_strand="+" temp_description="C02HBa0236E02.1  AC215430.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0236E02 sequenced_by:kribb upload_account_name:korea">
        <position start="67982" stop="95703"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="68285" g_stop="68305" g_length="21"/>
          <reference_exon_boundary r_type="cDNA" r_start="20" r_stop="40" r_length="21" r_score="0.952"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="68306" i_stop="69046" i_length="741">
            <donor d_prob="0.995" d_score="0.00"/>
            <acceptor a_prob="0.768" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="69047" g_stop="69171" g_length="125"/>
          <reference_exon_boundary r_type="cDNA" r_start="41" r_stop="165" r_length="125" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="69172" i_stop="69406" i_length="235">
            <donor d_prob="0.983" d_score="1.00"/>
            <acceptor a_prob="0.964" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="69407" g_stop="69519" g_length="113"/>
          <reference_exon_boundary r_type="cDNA" r_start="166" r_stop="278" r_length="113" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="69520" i_stop="69630" i_length="111">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.989" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="69631" g_stop="69980" g_length="350"/>
          <reference_exon_boundary r_type="cDNA" r_start="279" r_stop="628" r_length="350" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="69981" i_stop="70082" i_length="102">
            <donor d_prob="0.000" d_score="1.00"/>
            <acceptor a_prob="0.321" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="70083" g_stop="70110" g_length="28"/>
          <reference_exon_boundary r_type="cDNA" r_start="629" r_stop="655" r_length="27" r_score="0.607"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0236E02.1" gen_strand="+" ref_id="SGN-E552969" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>637</cumulative_length_of_scored_exons>
        <coverage percentage="0.973" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0236E02.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E552969" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="68285" e_stop="68305"/>
          <exon e_start="69047" e_stop="69171"/>
          <exon e_start="69407" e_stop="69519"/>
          <exon e_start="69631" e_stop="69980"/>
          <exon e_start="70083" e_stop="70110"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCCTCTTACAGAGAAAACAAAGTAAGGTTTCTGTTTCTGTAATTACCCGTCGTAAACCTATACAATAATATTTATTGACAAAGCTTCTTATATTCAAGTTATTTTAACAATGACTTAATTATGAAATGAACTAAGTAAGCTAAAGTGAATATTCATTGAGAATGAAATATGATATTTAGCGAAGGGAAGGAGAATCTTTGGTGTCATCGTAATTTTTTGGTATCACTCTAGATCATATATAAAGTAGTTGTATATTTAGATTCCCCGATTGTATTCCCTAAGTTAAGAAATTCTCTTGAGCATCCACCATATACTATGATACATGACTTTGGCTAAGCTCAAAAAGACTATCTCAATGATGGCCCTCCATGGATTCTCCACCTATATAAGCCACGGCTAAAGAAAAATTGCTTGGCCAAGTTGTCTTTTACCTTTGGCATGATGCAAAAAACATTTGATATTCTTTCTGTGTGAACCACTGCTACGAGTAATATGTTCTTAGAGATCATGTTTTCTTTTTGTTCTTCCTTTAATTTTCTATTTGAAGATTTGTCATCAGTTAGAGGTCATCGGTAGGATGATAGATGTTCTCAGCAACTTGTGTTGCCAGAATAATATGATTGCCAATGGAGTATTTTTAAGATTCTTGGAGATGTAAGAGTTGTTTCTGTCCATACATCACTCTTCTCATGTCACTAAGGTCATTGATTGTTTCCATGTGCTATATCGCAAATTGCTCACAATTTTAACTATGTGATCCAGAGGAATGTTTGACAAGGAAAGAATTGCAAAGTTGAAGAAGGGAGTTCTAATTGTAAACAATGCTCGAGGAGCAATTATGGACACTCAAGCAGTTGTTGATGCTTGTAACAGCGGTCATATTGCAGGTATTTTAACATAACTTGAACACATCATCCAGAGATGAGCCCTCAGCCTTAATATCAATTGAACACACCATTATATTTTTTTCTTCAATTCTTGCTTGTTTCTTTTCTTCAATATATTTTATCGACATTTGGAAGTAGTTCCATATCTTGTGGAATTGCCGAATCCTTTGAAGAAAGAAGTACTTCTAAAACTATATTGAGTTCTTTTCTTTCGGTTATTTCCCCCCAAATTTAGGATACAGTGGAGATGTTTGGTACCCACAACCAGCTCCCAAGGACCATCTATGGCGTTACATGCCAAACCAAGCTATGACTCCTCACATTTCTGGGACTACCATTGATGCACAGGTTTGTAAATACTCTGTTTCTCTAATTTCTTTAGGCTTTGCTTTTTCTTTACTTTCACGACATTATAATTGCGATTAAACTGAGAGAAGCTTGTTACTTTCAATTTCGCAGTTGAGGTATGCAGCTGGAACAAAGGATATGTTGGACAGGTACTTCAAGGGTGAGGATTTCCCTGCTGAAAATTACATTGTCAAGGATGGGGAATTGGCACCTCAGTATCGCTAAATTATTTATGTATAGAGTTGTGTCTAGATTTCTGTGTTAAATAAACTGGCAAGCCGTGTCTTCAATAAGCTGATAAAATTGGCTACTTTATGTTCTTCTAGAACTCTAATGCAGTTTTTCTCCGGGTTAGCTGTAACTTTTGTGATGGAAACATATGTCCTCTTCTGTGATGGAGGTCTATGTATGATCCTCCAGTGTCTTTCTTGAGTCTATAACTGAACTTCCTTGCTGTGGTAGTTGTACTGGTGTTCCTGGACATTTTATGTTTTAAAAAAAATTATCTTCTTGTTTGCTAGTATTTGTTGCAGTCGCTAGGTTAATCTTTTCTACGACGCCAGGAAAAACTTGGCAAAAATAATGAAATGA</genome_strand>
        <mrna_strand>GGCTCTTACAGAGAAAACAAA.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGGAATGTTTGACAAGGAAAGAATTGCAAAGTTGAAGAAGGGAGTTCTAATTGTAAACAATGCTCGAGGAGCAATTATGGACACTCAAGCAGTTGTTGATGCTTGTAACAGCGGTCATATTGCAG...........................................................................................................................................................................................................................................GATACAGTGGAGATGTTTGGTACCCACAACCAGCTCCCAAGGACCATCTATGGCGTTACATGCCAAACCAAGCTATGACTCCTCACATTTCTGGGACTACCATTGATGCACAG...............................................................................................................TTGAGGTATGCAGCTGGAACAAAGGATATGTTGGACAGGTACTTCAAGGGTGAGGATTTCCCTGCTGAAAATTACATTGTCAAGGATGGGGAATTGGCACCTCAGTATCGCTAAATTATTTATGTATAGAGTTGTGTCTAGATTTCTGTGTTAAATAAACTGGCAAGCCGTGTCTTCAATAAGCTGATAAAATTGGCTACTTTATGTTCTTCTAGAACTCTAATGCAGTTTTTCTCCGGGTTAGCTGTAACTTTTGTGATGGAAACATATGTCCTCTTCTGTGATGGAGGTCTATGTATGATCCTCCAGTGTCTTTCTTGAGTCTATAACTGAACTTCCTTGCTGTGGTA......................................................................................................-AAAAAAAAAAAAAAAAAAATAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0236E02-u8qcS/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E239621" ref_strand="+" ref_description="SGN-E239621 [cLED-23-F16]">
      <seq>caacttgtgttgccagaataatatgattgccaatggagtatttttaagattcttggagatgtaagagttgtttctgtccatacatcactcttctcatgtcactaaggtcattgattgtttccatgtgctatatcgcaaattgctcacaattttaactatgtgatccagaggaatgtttgacaaggaaagaattgcaaagttgaagaagggagttctaattgtaaacaatgctcgaggagcaattatggacactcaagcagttgttgatgcttgtaacagcggtcatattgcaggtattttaacataacttgaacacatcatccagagatgagccctcagccttaatatcaattgaacacaccattatatttttttcttcaattcttgcttggttcttttcttcaatatattttatcgacatt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0236E02-u8qcS/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0236E02.1" temp_strand="+" temp_description="C02HBa0236E02.1  AC215430.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0236E02 sequenced_by:kribb upload_account_name:korea">
        <position start="68579" stop="69600"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="68879" g_stop="69300" g_length="422"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="422" r_length="422" r_score="0.998"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0236E02.1" gen_strand="+" ref_id="SGN-E239621" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>422</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0236E02.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E239621" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="68879" e_stop="69300"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAACTTGTGTTGCCAGAATAATATGATTGCCAATGGAGTATTTTTAAGATTCTTGGAGATGTAAGAGTTGTTTCTGTCCATACATCACTCTTCTCATGTCACTAAGGTCATTGATTGTTTCCATGTGCTATATCGCAAATTGCTCACAATTTTAACTATGTGATCCAGAGGAATGTTTGACAAGGAAAGAATTGCAAAGTTGAAGAAGGGAGTTCTAATTGTAAACAATGCTCGAGGAGCAATTATGGACACTCAAGCAGTTGTTGATGCTTGTAACAGCGGTCATATTGCAGGTATTTTAACATAACTTGAACACATCATCCAGAGATGAGCCCTCAGCCTTAATATCAATTGAACACACCATTATATTTTTTTCTTCAATTCTTGCTTGTTTCTTTTCTTCAATATATTTTATCGACATT</genome_strand>
        <mrna_strand>CAACTTGTGTTGCCAGAATAATATGATTGCCAATGGAGTATTTTTAAGATTCTTGGAGATGTAAGAGTTGTTTCTGTCCATACATCACTCTTCTCATGTCACTAAGGTCATTGATTGTTTCCATGTGCTATATCGCAAATTGCTCACAATTTTAACTATGTGATCCAGAGGAATGTTTGACAAGGAAAGAATTGCAAAGTTGAAGAAGGGAGTTCTAATTGTAAACAATGCTCGAGGAGCAATTATGGACACTCAAGCAGTTGTTGATGCTTGTAACAGCGGTCATATTGCAGGTATTTTAACATAACTTGAACACATCATCCAGAGATGAGCCCTCAGCCTTAATATCAATTGAACACACCATTATATTTTTTTCTTCAATTCTTGCTTGGTTCTTTTCTTCAATATATTTTATCGACATT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0236E02-u8qcS/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E410154" ref_strand="-" ref_description="SGN-E410154 [PPI-16-O17]">
      <seq>aaggaatgtttgacaaggaaagaattgcaaagttgaagaagggagttctaattgtaaacaatgctcgaggagcaattatggacactcaagccagttgttgatgcttgtaacagcggtcatattgcaggatacagtggagatgtttggtacccacaaccagctcccaaggaccatccgtggcgctacatgccaaaccaagctatgactcctcacatttctgggactaccattgatgcacagttgaggtatgcagctggaacaaaggatatgttggacaggtacttcaagggtgaggatttccctgctgaaaattacattgtcaaggatggggaattggcacctcagtatcgctaaatcattaatgtaccttagttgtgcctagatttctgtgtcaaataaactggcaagctgcgtcttcaataagctgataaaattggctacttatgttcttttagaactgtaatgcagtttttcttcggttggctgtatcgtaacttttgcgatggaaacatgtcctcttctgtgatggaggtctatgtatgagcctccagtgtctttcttgagtctataactgggaaacttccttgctatggtagttgtactggtgttgtcctggacattttatgattaaaaaaatattttcttcttcttgctcaaaaaaaaaaaaaaaaaaaaaaaaaactcgagactagttctct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0236E02-u8qcS/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0236E02.1" temp_strand="+" temp_description="C02HBa0236E02.1  AC215430.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0236E02 sequenced_by:kribb upload_account_name:korea">
        <position start="68747" stop="95700"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="69046" g_stop="69171" g_length="126"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="127" r_length="127" r_score="0.976"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="69172" i_stop="69406" i_length="235">
            <donor d_prob="0.983" d_score="0.96"/>
            <acceptor a_prob="0.964" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="69407" g_stop="69519" g_length="113"/>
          <reference_exon_boundary r_type="cDNA" r_start="128" r_stop="240" r_length="113" r_score="0.973"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="69520" i_stop="69630" i_length="111">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.989" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="69631" g_stop="70039" g_length="409"/>
          <reference_exon_boundary r_type="cDNA" r_start="241" r_stop="655" r_length="415" r_score="0.880"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="70040" i_stop="70335" i_length="296">
            <donor d_prob="0.000" d_score="0.77"/>
            <acceptor a_prob="0.182" a_score="0.48"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="70336" g_stop="70379" g_length="44"/>
          <reference_exon_boundary r_type="cDNA" r_start="656" r_stop="698" r_length="43" r_score="0.477"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0236E02.1" gen_strand="+" ref_id="SGN-E410154" ref_strand="-">
        <total_alignment_score>0.915</total_alignment_score>
        <cumulative_length_of_scored_exons>692</cumulative_length_of_scored_exons>
        <coverage percentage="0.991" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0236E02.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E410154" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="69046" e_stop="69171"/>
          <exon e_start="69407" e_stop="69519"/>
          <exon e_start="69631" e_stop="70039"/>
          <exon e_start="70336" e_stop="70379"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAGGAATGTTTGACAAGGAAAGAATTGCAAAGTTGAAGAAGGGAGTTCTAATTGTAAACAATGCTCGAGGAGCAATTATGGACACTCAAG-CAGTTGTTGATGCTTGTAACAGCGGTCATATTGCAGGTATTTTAACATAACTTGAACACATCATCCAGAGATGAGCCCTCAGCCTTAATATCAATTGAACACACCATTATATTTTTTTCTTCAATTCTTGCTTGTTTCTTTTCTTCAATATATTTTATCGACATTTGGAAGTAGTTCCATATCTTGTGGAATTGCCGAATCCTTTGAAGAAAGAAGTACTTCTAAAACTATATTGAGTTCTTTTCTTTCGGTTATTTCCCCCCAAATTTAGGATACAGTGGAGATGTTTGGTACCCACAACCAGCTCCCAAGGACCATCTATGGCGTTACATGCCAAACCAAGCTATGACTCCTCACATTTCTGGGACTACCATTGATGCACAGGTTTGTAAATACTCTGTTTCTCTAATTTCTTTAGGCTTTGCTTTTTCTTTACTTTCACGACATTATAATTGCGATTAAACTGAGAGAAGCTTGTTACTTTCAATTTCGCAGTTGAGGTATGCAGCTGGAACAAAGGATATGTTGGACAGGTACTTCAAGGGTGAGGATTTCCCTGCTGAAAATTACATTGTCAAGGATGGGGAATTGGCACCTCAGTATCGCTAAATTATTTATGTA-TAGAGTTGTGTCTAGATTTCTGTGTTAAATAAACTGGCAAGCCGTGTCTTCAATAAGCTGATAAAATTGGCTACTTTATGTTCTTCTAGAACTCTAATGCAGTTTTTC-TCCG--GGTTAGCT-GTAACTTTTGTGATGGAAACATATGTCCTCTTCTGTGATGGAGGTCTATGTATGATCCTCCAGTGTCTTTCTTGAGTCTATAACT--G-AACTTCCTTGCTGTGGTAGTTGTACTGGTG-T-TCCTGGACATTTTATGTTTTAAAAAAAATTATCTTCTTGTTTGCTAGTATTTGTTGCAGTCGCTAGGTTAATCTTTTCTACGACGCCAGGAAAAACTTGGCAAAAATAATGAAATGATGTGAAACAGAATTTGACATCACAGTATATTTTGCTTTATTGGGAAGAAAAGCCGACTTCATCAGTCTGGAACTTCAGATTTTTAAACGACCTCTTTCTTCACATACAAGCGAATAAATGCGATATATGCGCCATTTGACACCCAAGTTGGAGTGGTTCATTTTACAGTTACGCTTTTTTGTCTATAATAAAAAAGTCAATTAGTATATAACATGTTTGAATTAGATCTTAAATCTAATTCACACTCCAAAAGCTAGTTCTAGTTCAAA</genome_strand>
        <mrna_strand>AAGGAATGTTTGACAAGGAAAGAATTGCAAAGTTGAAGAAGGGAGTTCTAATTGTAAACAATGCTCGAGGAGCAATTATGGACACTCAAGCCAGTTGTTGATGCTTGTAACAGCGGTCATATTGCAG...........................................................................................................................................................................................................................................GATACAGTGGAGATGTTTGGTACCCACAACCAGCTCCCAAGGACCATCCGTGGCGCTACATGCCAAACCAAGCTATGACTCCTCACATTTCTGGGACTACCATTGATGCACAG...............................................................................................................TTGAGGTATGCAGCTGGAACAAAGGATATGTTGGACAGGTACTTCAAGGGTGAGGATTTCCCTGCTGAAAATTACATTGTCAAGGATGGGGAATTGGCACCTCAGTATCGCTAAATCATTAATGTACCTTAGTTGTGCCTAGATTTCTGTGTCAAATAAACTGGCAAGCTGCGTCTTCAATAAGCTGATAAAATTGGCTAC-TTATGTTCTTTTAGAACTGTAATGCAGTTTTTCTTCGGTTGGCTGTATCGTAACTTTTGCGATGGAAAC--ATGTCCTCTTCTGTGATGGAGGTCTATGTATGAGCCTCCAGTGTCTTTCTTGAGTCTATAACTGGGAAACTTCCTTGCTATGGTAGTTGTACTGGTGTTGTCCTGGACATTTTATGATTAAAAAAATATTTTCTTCTT-CTTGCTC........................................................................................................................................................................................................................................................................................................AAAAAAAAAAAAAAAAAAAAAAAAAACTCGAG-ACTAGTTCTCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0236E02-u8qcS/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E337036" ref_strand="+" ref_description="SGN-E337036 [cTOE-20-H11]">
      <seq>aatgtttgacaaggaaagaattgcaaagttgaagaagggagttctaattgtaaacaatgctcgaggagcaattatggacactcaagcagttgttgatgcttgtaacagcggtcatattgcaggatacagtggagatgtttggtacccacaaccagctcccaaggaccatctatggcgttacatgccaaaccaagctatgactcctcacatttctgggactaccattgatgcacagttgaggtatgcagctggaacaaaggatatgttggacaggtacttcaagggtaaggatttccctgctgaaaattacattgtcaaggatggggaattggcacctcagtatcgctaaattatttatgtatagagttgtgtctagatttctgtgttaaataaactggcaagccgtgtcttcaataagctgataaaattggctactttatgttcttctagaactctaatgcagtttttctccgggttagctgtaacttttgtgatggaaacatatgtcctcttctgtgatggaggtctatgtatgatcctccagtgtctttcttgagtctataactgaacttccttgctgtggtagttgtactggtgttcctggacattttatgttttaaaaaaaat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0236E02-u8qcS/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0236E02.1" temp_strand="+" temp_description="C02HBa0236E02.1  AC215430.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0236E02 sequenced_by:kribb upload_account_name:korea">
        <position start="68750" stop="70322"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="69050" g_stop="69171" g_length="122"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="122" r_length="122" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="69172" i_stop="69406" i_length="235">
            <donor d_prob="0.983" d_score="1.00"/>
            <acceptor a_prob="0.964" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="69407" g_stop="69519" g_length="113"/>
          <reference_exon_boundary r_type="cDNA" r_start="123" r_stop="235" r_length="113" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="69520" i_stop="69630" i_length="111">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.989" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="69631" g_stop="70022" g_length="392"/>
          <reference_exon_boundary r_type="cDNA" r_start="236" r_stop="627" r_length="392" r_score="0.997"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0236E02.1" gen_strand="+" ref_id="SGN-E337036" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>627</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0236E02.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E337036" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="69050" e_stop="69171"/>
          <exon e_start="69407" e_stop="69519"/>
          <exon e_start="69631" e_stop="70022"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AATGTTTGACAAGGAAAGAATTGCAAAGTTGAAGAAGGGAGTTCTAATTGTAAACAATGCTCGAGGAGCAATTATGGACACTCAAGCAGTTGTTGATGCTTGTAACAGCGGTCATATTGCAGGTATTTTAACATAACTTGAACACATCATCCAGAGATGAGCCCTCAGCCTTAATATCAATTGAACACACCATTATATTTTTTTCTTCAATTCTTGCTTGTTTCTTTTCTTCAATATATTTTATCGACATTTGGAAGTAGTTCCATATCTTGTGGAATTGCCGAATCCTTTGAAGAAAGAAGTACTTCTAAAACTATATTGAGTTCTTTTCTTTCGGTTATTTCCCCCCAAATTTAGGATACAGTGGAGATGTTTGGTACCCACAACCAGCTCCCAAGGACCATCTATGGCGTTACATGCCAAACCAAGCTATGACTCCTCACATTTCTGGGACTACCATTGATGCACAGGTTTGTAAATACTCTGTTTCTCTAATTTCTTTAGGCTTTGCTTTTTCTTTACTTTCACGACATTATAATTGCGATTAAACTGAGAGAAGCTTGTTACTTTCAATTTCGCAGTTGAGGTATGCAGCTGGAACAAAGGATATGTTGGACAGGTACTTCAAGGGTGAGGATTTCCCTGCTGAAAATTACATTGTCAAGGATGGGGAATTGGCACCTCAGTATCGCTAAATTATTTATGTATAGAGTTGTGTCTAGATTTCTGTGTTAAATAAACTGGCAAGCCGTGTCTTCAATAAGCTGATAAAATTGGCTACTTTATGTTCTTCTAGAACTCTAATGCAGTTTTTCTCCGGGTTAGCTGTAACTTTTGTGATGGAAACATATGTCCTCTTCTGTGATGGAGGTCTATGTATGATCCTCCAGTGTCTTTCTTGAGTCTATAACTGAACTTCCTTGCTGTGGTAGTTGTACTGGTGTTCCTGGACATTTTATGTTTTAAAAAAAAT</genome_strand>
        <mrna_strand>AATGTTTGACAAGGAAAGAATTGCAAAGTTGAAGAAGGGAGTTCTAATTGTAAACAATGCTCGAGGAGCAATTATGGACACTCAAGCAGTTGTTGATGCTTGTAACAGCGGTCATATTGCAG...........................................................................................................................................................................................................................................GATACAGTGGAGATGTTTGGTACCCACAACCAGCTCCCAAGGACCATCTATGGCGTTACATGCCAAACCAAGCTATGACTCCTCACATTTCTGGGACTACCATTGATGCACAG...............................................................................................................TTGAGGTATGCAGCTGGAACAAAGGATATGTTGGACAGGTACTTCAAGGGTAAGGATTTCCCTGCTGAAAATTACATTGTCAAGGATGGGGAATTGGCACCTCAGTATCGCTAAATTATTTATGTATAGAGTTGTGTCTAGATTTCTGTGTTAAATAAACTGGCAAGCCGTGTCTTCAATAAGCTGATAAAATTGGCTACTTTATGTTCTTCTAGAACTCTAATGCAGTTTTTCTCCGGGTTAGCTGTAACTTTTGTGATGGAAACATATGTCCTCTTCTGTGATGGAGGTCTATGTATGATCCTCCAGTGTCTTTCTTGAGTCTATAACTGAACTTCCTTGCTGTGGTAGTTGTACTGGTGTTCCTGGACATTTTATGTTTTAAAAAAAAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0236E02-u8qcS/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E423814" ref_strand="-" ref_description="SGN-E423814 [STM-42-J11]">
      <seq>ggaaagaattgcaaagttgaagaagggagttctaattgtaaacaatgctcgaggagcaattatggacactcaagcagttgttgatgcttgtaacagcggtcatattgcaggatacagtggagatgtttggtacccacaaccagctcccaaggaccatccatggcgctacatgccaaaccaagctatgactcctcacatttctgggactaccattgatgcacagttgaggtatgcagctggaacaaaggatatgttggacaggtacttcaagggtgaggatttccctgctgaaaattacattgtcaaggatggggaattggcacctcagtatcgctaaattattaatgtaccttagagttgtgtctagatttctgtgtcaaataaactggcaagctgtgtcttaaataagctgataaaattggctacttatgttcttttagaactgtaatgcagtttttctccggttggctgtatcgtaacgtttgtgatggaaacatgtcctcttctgtgatggaggttaatgtgtgatcctccagtgtctttcttgagtctataactgaacttccttgctatggtagttgtactggtgttgtcctggacattttatgattaaaaaaaagattatcttcaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0236E02-u8qcS/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0236E02.1" temp_strand="+" temp_description="C02HBa0236E02.1  AC215430.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0236E02 sequenced_by:kribb upload_account_name:korea">
        <position start="68762" stop="78350"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="69062" g_stop="69171" g_length="110"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="110" r_length="110" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="69172" i_stop="69406" i_length="235">
            <donor d_prob="0.983" d_score="1.00"/>
            <acceptor a_prob="0.964" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="69407" g_stop="69519" g_length="113"/>
          <reference_exon_boundary r_type="cDNA" r_start="111" r_stop="223" r_length="113" r_score="0.982"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="69520" i_stop="69630" i_length="111">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.989" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="69631" g_stop="70020" g_length="390"/>
          <reference_exon_boundary r_type="cDNA" r_start="224" r_stop="619" r_length="396" r_score="0.903"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="70021" i_stop="70082" i_length="62">
            <donor d_prob="0.000" d_score="0.85"/>
            <acceptor a_prob="0.321" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="70083" g_stop="70107" g_length="25"/>
          <reference_exon_boundary r_type="cDNA" r_start="620" r_stop="644" r_length="25" r_score="0.640"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0236E02.1" gen_strand="+" ref_id="SGN-E423814" ref_strand="-">
        <total_alignment_score>0.935</total_alignment_score>
        <cumulative_length_of_scored_exons>638</cumulative_length_of_scored_exons>
        <coverage percentage="0.991" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0236E02.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E423814" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="69062" e_stop="69171"/>
          <exon e_start="69407" e_stop="69519"/>
          <exon e_start="69631" e_stop="70020"/>
          <exon e_start="70083" e_stop="70107"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGAAAGAATTGCAAAGTTGAAGAAGGGAGTTCTAATTGTAAACAATGCTCGAGGAGCAATTATGGACACTCAAGCAGTTGTTGATGCTTGTAACAGCGGTCATATTGCAGGTATTTTAACATAACTTGAACACATCATCCAGAGATGAGCCCTCAGCCTTAATATCAATTGAACACACCATTATATTTTTTTCTTCAATTCTTGCTTGTTTCTTTTCTTCAATATATTTTATCGACATTTGGAAGTAGTTCCATATCTTGTGGAATTGCCGAATCCTTTGAAGAAAGAAGTACTTCTAAAACTATATTGAGTTCTTTTCTTTCGGTTATTTCCCCCCAAATTTAGGATACAGTGGAGATGTTTGGTACCCACAACCAGCTCCCAAGGACCATCTATGGCGTTACATGCCAAACCAAGCTATGACTCCTCACATTTCTGGGACTACCATTGATGCACAGGTTTGTAAATACTCTGTTTCTCTAATTTCTTTAGGCTTTGCTTTTTCTTTACTTTCACGACATTATAATTGCGATTAAACTGAGAGAAGCTTGTTACTTTCAATTTCGCAGTTGAGGTATGCAGCTGGAACAAAGGATATGTTGGACAGGTACTTCAAGGGTGAGGATTTCCCTGCTGAAAATTACATTGTCAAGGATGGGGAATTGGCACCTCAGTATCGCTAAATTATTTATGTA---TAGAGTTGTGTCTAGATTTCTGTGTTAAATAAACTGGCAAGCCGTGTCTTCAATAAGCTGATAAAATTGGCTACTTTATGTTCTTCTAGAACTCTAATGCAGTTTTTCTCC-G--GGTTAGCT-GTAACTTTTGTGATGGAAACATATGTCCTCTTCTGTGATGGAGGTCTATGTATGATCCTCCAGTGTCTTTCTTGAGTCTATAACTGAACTTCCTTGCTGTGGTAGTTGTACTGGTG-T-TCCTGGACATTTTATGTTTTAAAAAAAATTATCTTCTTGTTTGCTAGTATTTGTTGCAGTCGCTAGGTTAATCTTTTCTACGACGCCAGGAAAAACTTGGCAAAAATAATGAAA</genome_strand>
        <mrna_strand>GGAAAGAATTGCAAAGTTGAAGAAGGGAGTTCTAATTGTAAACAATGCTCGAGGAGCAATTATGGACACTCAAGCAGTTGTTGATGCTTGTAACAGCGGTCATATTGCAG...........................................................................................................................................................................................................................................GATACAGTGGAGATGTTTGGTACCCACAACCAGCTCCCAAGGACCATCCATGGCGCTACATGCCAAACCAAGCTATGACTCCTCACATTTCTGGGACTACCATTGATGCACAG...............................................................................................................TTGAGGTATGCAGCTGGAACAAAGGATATGTTGGACAGGTACTTCAAGGGTGAGGATTTCCCTGCTGAAAATTACATTGTCAAGGATGGGGAATTGGCACCTCAGTATCGCTAAATTATTAATGTACCTTAGAGTTGTGTCTAGATTTCTGTGTCAAATAAACTGGCAAGCTGTGTCTTAAATAAGCTGATAAAATTGGCTAC-TTATGTTCTTTTAGAACTGTAATGCAGTTTTTCTCCGGTTGGCTGTATCGTAACGTTTGTGATGGAAAC--ATGTCCTCTTCTGTGATGGAGGTTAATGTGTGATCCTCCAGTGTCTTTCTTGAGTCTATAACTGAACTTCCTTGCTATGGTAGTTGTACTGGTGTTGTCCTGGACATTTTATGATTAAAAAAAA..............................................................GATTATCTTCAAAAAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0236E02-u8qcS/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E269085" ref_strand="-" ref_description="SGN-E269085 [cLEI-16-L14]">
      <seq>tgctcgaggagcaattatggacactcaagcagttgttgatgcttgtaacagcggtcatattgcaggatacagtggagatgtttggtacccacaaccagctcccaaggaccatctatggcgttacatgccaaaccaagctatgactcctcacatttctgggactaccattgatgcacagttgaggtatgcagctggaacaaaggatatgttggacaggtacttcaagggtgaggatttccctgctgaaaattacattgtcaaggatggggaattggcacctcagtatcgctaaattatttatgtatagagttgtgtctagatttctgtgttaaataaactggcaagccgtgtcttcaataagctgataaaattggctactttatgttcttctagaactctaatgcagtttttctccgggttagctgtaacttttgtgatggaaacatatgtcctcttctgtgatggaggtctatgtatgatcctccagtgtctttcttgagtctataactgaacttccttgctgtggtaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0236E02-u8qcS/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0236E02.1" temp_strand="+" temp_description="C02HBa0236E02.1  AC215430.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0236E02 sequenced_by:kribb upload_account_name:korea">
        <position start="68807" stop="70280"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="69107" g_stop="69171" g_length="65"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="65" r_length="65" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="69172" i_stop="69406" i_length="235">
            <donor d_prob="0.983" d_score="1.00"/>
            <acceptor a_prob="0.964" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="69407" g_stop="69519" g_length="113"/>
          <reference_exon_boundary r_type="cDNA" r_start="66" r_stop="178" r_length="113" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="69520" i_stop="69630" i_length="111">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.989" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="69631" g_stop="69986" g_length="356"/>
          <reference_exon_boundary r_type="cDNA" r_start="179" r_stop="534" r_length="356" r_score="0.986"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0236E02.1" gen_strand="+" ref_id="SGN-E269085" ref_strand="-">
        <total_alignment_score>0.991</total_alignment_score>
        <cumulative_length_of_scored_exons>534</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0236E02.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E269085" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="69107" e_stop="69171"/>
          <exon e_start="69407" e_stop="69519"/>
          <exon e_start="69631" e_stop="69986"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGCTCGAGGAGCAATTATGGACACTCAAGCAGTTGTTGATGCTTGTAACAGCGGTCATATTGCAGGTATTTTAACATAACTTGAACACATCATCCAGAGATGAGCCCTCAGCCTTAATATCAATTGAACACACCATTATATTTTTTTCTTCAATTCTTGCTTGTTTCTTTTCTTCAATATATTTTATCGACATTTGGAAGTAGTTCCATATCTTGTGGAATTGCCGAATCCTTTGAAGAAAGAAGTACTTCTAAAACTATATTGAGTTCTTTTCTTTCGGTTATTTCCCCCCAAATTTAGGATACAGTGGAGATGTTTGGTACCCACAACCAGCTCCCAAGGACCATCTATGGCGTTACATGCCAAACCAAGCTATGACTCCTCACATTTCTGGGACTACCATTGATGCACAGGTTTGTAAATACTCTGTTTCTCTAATTTCTTTAGGCTTTGCTTTTTCTTTACTTTCACGACATTATAATTGCGATTAAACTGAGAGAAGCTTGTTACTTTCAATTTCGCAGTTGAGGTATGCAGCTGGAACAAAGGATATGTTGGACAGGTACTTCAAGGGTGAGGATTTCCCTGCTGAAAATTACATTGTCAAGGATGGGGAATTGGCACCTCAGTATCGCTAAATTATTTATGTATAGAGTTGTGTCTAGATTTCTGTGTTAAATAAACTGGCAAGCCGTGTCTTCAATAAGCTGATAAAATTGGCTACTTTATGTTCTTCTAGAACTCTAATGCAGTTTTTCTCCGGGTTAGCTGTAACTTTTGTGATGGAAACATATGTCCTCTTCTGTGATGGAGGTCTATGTATGATCCTCCAGTGTCTTTCTTGAGTCTATAACTGAACTTCCTTGCTGTGGTAGTTGTA</genome_strand>
        <mrna_strand>TGCTCGAGGAGCAATTATGGACACTCAAGCAGTTGTTGATGCTTGTAACAGCGGTCATATTGCAG...........................................................................................................................................................................................................................................GATACAGTGGAGATGTTTGGTACCCACAACCAGCTCCCAAGGACCATCTATGGCGTTACATGCCAAACCAAGCTATGACTCCTCACATTTCTGGGACTACCATTGATGCACAG...............................................................................................................TTGAGGTATGCAGCTGGAACAAAGGATATGTTGGACAGGTACTTCAAGGGTGAGGATTTCCCTGCTGAAAATTACATTGTCAAGGATGGGGAATTGGCACCTCAGTATCGCTAAATTATTTATGTATAGAGTTGTGTCTAGATTTCTGTGTTAAATAAACTGGCAAGCCGTGTCTTCAATAAGCTGATAAAATTGGCTACTTTATGTTCTTCTAGAACTCTAATGCAGTTTTTCTCCGGGTTAGCTGTAACTTTTGTGATGGAAACATATGTCCTCTTCTGTGATGGAGGTCTATGTATGATCCTCCAGTGTCTTTCTTGAGTCTATAACTGAACTTCCTTGCTGTGGTAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0236E02-u8qcS/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E433751" ref_strand="-" ref_description="SGN-E433751 [STM-58-P8]">
      <seq>tcaagcagttgttgatgcttgtaacagcggtcatattgcaggatacagtggagatgtttggtacccacaaccagctcccaaggaccatccgtggcgctacatgccaaaccaagctatgactcctcacatttctgggactaccattgatgcacagttgaggtatgcagctggaacaaaggatatgttggacaggtacttcaagggtgaggatttccctgctgaaaattacattgtcaaggatggggaattggcacctcagtatcgctaaatcattaatgtaccttagttgtgcctagatttctgtgtcaaataaactggcaagctgcgtcttcaataagctgataaaattggctacttatgttcttttagaactgtaatgcagtttttcttcggttggctgtatcgtaacttttgcgatggaaacatgtcctcttctgtgatggaggtctatgtatgagcctccagtgtctttcttgagtctataactgggaaacttccttgctatggtagttgtactggtgttgtcctggaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0236E02-u8qcS/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0236E02.1" temp_strand="+" temp_description="C02HBa0236E02.1  AC215430.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0236E02 sequenced_by:kribb upload_account_name:korea">
        <position start="68831" stop="70294"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="69131" g_stop="69171" g_length="41"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="41" r_length="41" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="69172" i_stop="69406" i_length="235">
            <donor d_prob="0.983" d_score="1.00"/>
            <acceptor a_prob="0.964" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="69407" g_stop="69519" g_length="113"/>
          <reference_exon_boundary r_type="cDNA" r_start="42" r_stop="154" r_length="113" r_score="0.973"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="69520" i_stop="69630" i_length="111">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.989" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="69631" g_stop="70001" g_length="371"/>
          <reference_exon_boundary r_type="cDNA" r_start="155" r_stop="532" r_length="378" r_score="0.884"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0236E02.1" gen_strand="+" ref_id="SGN-E433751" ref_strand="-">
        <total_alignment_score>0.905</total_alignment_score>
        <cumulative_length_of_scored_exons>525</cumulative_length_of_scored_exons>
        <coverage percentage="0.987" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0236E02.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E433751" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="69131" e_stop="69171"/>
          <exon e_start="69407" e_stop="69519"/>
          <exon e_start="69631" e_stop="70001"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCAAGCAGTTGTTGATGCTTGTAACAGCGGTCATATTGCAGGTATTTTAACATAACTTGAACACATCATCCAGAGATGAGCCCTCAGCCTTAATATCAATTGAACACACCATTATATTTTTTTCTTCAATTCTTGCTTGTTTCTTTTCTTCAATATATTTTATCGACATTTGGAAGTAGTTCCATATCTTGTGGAATTGCCGAATCCTTTGAAGAAAGAAGTACTTCTAAAACTATATTGAGTTCTTTTCTTTCGGTTATTTCCCCCCAAATTTAGGATACAGTGGAGATGTTTGGTACCCACAACCAGCTCCCAAGGACCATCTATGGCGTTACATGCCAAACCAAGCTATGACTCCTCACATTTCTGGGACTACCATTGATGCACAGGTTTGTAAATACTCTGTTTCTCTAATTTCTTTAGGCTTTGCTTTTTCTTTACTTTCACGACATTATAATTGCGATTAAACTGAGAGAAGCTTGTTACTTTCAATTTCGCAGTTGAGGTATGCAGCTGGAACAAAGGATATGTTGGACAGGTACTTCAAGGGTGAGGATTTCCCTGCTGAAAATTACATTGTCAAGGATGGGGAATTGGCACCTCAGTATCGCTAAATTATTTATGTA-TAGAGTTGTGTCTAGATTTCTGTGTTAAATAAACTGGCAAGCCGTGTCTTCAATAAGCTGATAAAATTGGCTACTTTATGTTCTTCTAGAACTCTAATGCAGTTTTTC-TCCG--GGTTAGCT-GTAACTTTTGTGATGGAAACATATGTCCTCTTCTGTGATGGAGGTCTATGTATGATCCTCCAGTGTCTTTCTTGAGTCTATAACT--G-AACTTCCTTGCTGTGGTAGTTGTACTGGTG-T-TCCTGGAC</genome_strand>
        <mrna_strand>TCAAGCAGTTGTTGATGCTTGTAACAGCGGTCATATTGCAG...........................................................................................................................................................................................................................................GATACAGTGGAGATGTTTGGTACCCACAACCAGCTCCCAAGGACCATCCGTGGCGCTACATGCCAAACCAAGCTATGACTCCTCACATTTCTGGGACTACCATTGATGCACAG...............................................................................................................TTGAGGTATGCAGCTGGAACAAAGGATATGTTGGACAGGTACTTCAAGGGTGAGGATTTCCCTGCTGAAAATTACATTGTCAAGGATGGGGAATTGGCACCTCAGTATCGCTAAATCATTAATGTACCTTAGTTGTGCCTAGATTTCTGTGTCAAATAAACTGGCAAGCTGCGTCTTCAATAAGCTGATAAAATTGGCTAC-TTATGTTCTTTTAGAACTGTAATGCAGTTTTTCTTCGGTTGGCTGTATCGTAACTTTTGCGATGGAAAC--ATGTCCTCTTCTGTGATGGAGGTCTATGTATGAGCCTCCAGTGTCTTTCTTGAGTCTATAACTGGGAAACTTCCTTGCTATGGTAGTTGTACTGGTGTTGTCCTGGAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0236E02-u8qcS/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E249185" ref_strand="-" ref_description="SGN-E249185 [cLEF-50-O21]">
      <seq>cttgtaacagcggtcatattgcaggatacagtgcagatgtttggtacccacaaccagctcccaaggaccatttatggcgttacatgccaaaccaagctatgactcctcacatttctgggactaccattgatgcacagttgaggtatgcagctggaacaaaggatatgttggacaggtccttcaagggtgaggatttccctgctgaaaattacattgtcaaggatggggaattggcacctcagtatcgctaaattatttatgtatagagttgtgtctagatttctgtgttaaataaactggcaagccgtgtcttcaataaggtgataaaattggctactttatgttcttctagaactctaatgcagtttttccccgggttagctgtaacttttgtgatgcaaacatatgtcctcttctgtgatggaggtctatgtatgatcctccagtgtctttcttgagtcaataactgaacttccttgctgtggtagttgcactggtgttcctggacattttatgttttaaaaaaaattatcttcttgttcgctagtaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0236E02-u8qcS/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0236E02.1" temp_strand="+" temp_description="C02HBa0236E02.1  AC215430.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0236E02 sequenced_by:kribb upload_account_name:korea">
        <position start="68848" stop="70342"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="69148" g_stop="69171" g_length="24"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="24" r_length="24" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="69172" i_stop="69406" i_length="235">
            <donor d_prob="0.983" d_score="0.00"/>
            <acceptor a_prob="0.964" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="69407" g_stop="69519" g_length="113"/>
          <reference_exon_boundary r_type="cDNA" r_start="25" r_stop="137" r_length="113" r_score="0.982"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="69520" i_stop="69630" i_length="111">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.989" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="69631" g_stop="70051" g_length="421"/>
          <reference_exon_boundary r_type="cDNA" r_start="138" r_stop="558" r_length="421" r_score="0.964"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0236E02.1" gen_strand="+" ref_id="SGN-E249185" ref_strand="-">
        <total_alignment_score>0.968</total_alignment_score>
        <cumulative_length_of_scored_exons>558</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0236E02.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E249185" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="69148" e_stop="69171"/>
          <exon e_start="69407" e_stop="69519"/>
          <exon e_start="69631" e_stop="70051"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTTGTAACAGCGGTCATATTGCAGGTATTTTAACATAACTTGAACACATCATCCAGAGATGAGCCCTCAGCCTTAATATCAATTGAACACACCATTATATTTTTTTCTTCAATTCTTGCTTGTTTCTTTTCTTCAATATATTTTATCGACATTTGGAAGTAGTTCCATATCTTGTGGAATTGCCGAATCCTTTGAAGAAAGAAGTACTTCTAAAACTATATTGAGTTCTTTTCTTTCGGTTATTTCCCCCCAAATTTAGGATACAGTGGAGATGTTTGGTACCCACAACCAGCTCCCAAGGACCATCTATGGCGTTACATGCCAAACCAAGCTATGACTCCTCACATTTCTGGGACTACCATTGATGCACAGGTTTGTAAATACTCTGTTTCTCTAATTTCTTTAGGCTTTGCTTTTTCTTTACTTTCACGACATTATAATTGCGATTAAACTGAGAGAAGCTTGTTACTTTCAATTTCGCAGTTGAGGTATGCAGCTGGAACAAAGGATATGTTGGACAGGTACTTCAAGGGTGAGGATTTCCCTGCTGAAAATTACATTGTCAAGGATGGGGAATTGGCACCTCAGTATCGCTAAATTATTTATGTATAGAGTTGTGTCTAGATTTCTGTGTTAAATAAACTGGCAAGCCGTGTCTTCAATAAGCTGATAAAATTGGCTACTTTATGTTCTTCTAGAACTCTAATGCAGTTTTTCTCCGGGTTAGCTGTAACTTTTGTGATGGAAACATATGTCCTCTTCTGTGATGGAGGTCTATGTATGATCCTCCAGTGTCTTTCTTGAGTCTATAACTGAACTTCCTTGCTGTGGTAGTTGTACTGGTGTTCCTGGACATTTTATGTTTTAAAAAAAATTATCTTCTTGTTTGCTAGTATTTGTTGCA</genome_strand>
        <mrna_strand>CTTGTAACAGCGGTCATATTGCAG...........................................................................................................................................................................................................................................GATACAGTGCAGATGTTTGGTACCCACAACCAGCTCCCAAGGACCATTTATGGCGTTACATGCCAAACCAAGCTATGACTCCTCACATTTCTGGGACTACCATTGATGCACAG...............................................................................................................TTGAGGTATGCAGCTGGAACAAAGGATATGTTGGACAGGTCCTTCAAGGGTGAGGATTTCCCTGCTGAAAATTACATTGTCAAGGATGGGGAATTGGCACCTCAGTATCGCTAAATTATTTATGTATAGAGTTGTGTCTAGATTTCTGTGTTAAATAAACTGGCAAGCCGTGTCTTCAATAAGGTGATAAAATTGGCTACTTTATGTTCTTCTAGAACTCTAATGCAGTTTTTCCCCGGGTTAGCTGTAACTTTTGTGATGCAAACATATGTCCTCTTCTGTGATGGAGGTCTATGTATGATCCTCCAGTGTCTTTCTTGAGTCAATAACTGAACTTCCTTGCTGTGGTAGTTGCACTGGTGTTCCTGGACATTTTATGTTTTAAAAAAAATTATCTTCTTGTTCGCTAGTAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0236E02-u8qcS/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E297153" ref_strand="-" ref_description="SGN-E297153 [cLET-29-K23]">
      <seq>gtcatattgcaggatacagtggagatgtttggtacccacaaccagctcccaaggaccatctatggcgttacatgccaaaccaagctatgactcctcacatttctgggactaccattgatgcacagttgaggtatgcagctggaacaaaggatatgttggacaggtacttcaagggtgaggatttccctgctgaaaattacattgtcaaggatggggaattggcacctcagtatcgctaaattatttatgtatagagttgtgtctagatttctgtgttaaataaactggcaagccgtgtcttcaataagctgataaaattggctactttatgttcttctagaactctaatgcagtttttctccgggttagctgtaacttttgtgatggaaacatatgtcctcttctgtgatggaggtctatgtatgatcctccagtgtctttcttgagtctataactgaacttccttgctgtggtagttgtactggtgttcctggacattttatgttttaaaaaaaattatcttcttgtttg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0236E02-u8qcS/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0236E02.1" temp_strand="+" temp_description="C02HBa0236E02.1  AC215430.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0236E02 sequenced_by:kribb upload_account_name:korea">
        <position start="69098" stop="70336"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="69160" g_stop="69171" g_length="12"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="12" r_length="12" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="69172" i_stop="69406" i_length="235">
            <donor d_prob="0.983" d_score="0.00"/>
            <acceptor a_prob="0.964" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="69407" g_stop="69519" g_length="113"/>
          <reference_exon_boundary r_type="cDNA" r_start="13" r_stop="125" r_length="113" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="69520" i_stop="69630" i_length="111">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.989" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="69631" g_stop="70036" g_length="406"/>
          <reference_exon_boundary r_type="cDNA" r_start="126" r_stop="531" r_length="406" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0236E02.1" gen_strand="+" ref_id="SGN-E297153" ref_strand="-">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>531</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0236E02.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E297153" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="69160" e_stop="69171"/>
          <exon e_start="69407" e_stop="69519"/>
          <exon e_start="69631" e_stop="70036"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTCATATTGCAGGTATTTTAACATAACTTGAACACATCATCCAGAGATGAGCCCTCAGCCTTAATATCAATTGAACACACCATTATATTTTTTTCTTCAATTCTTGCTTGTTTCTTTTCTTCAATATATTTTATCGACATTTGGAAGTAGTTCCATATCTTGTGGAATTGCCGAATCCTTTGAAGAAAGAAGTACTTCTAAAACTATATTGAGTTCTTTTCTTTCGGTTATTTCCCCCCAAATTTAGGATACAGTGGAGATGTTTGGTACCCACAACCAGCTCCCAAGGACCATCTATGGCGTTACATGCCAAACCAAGCTATGACTCCTCACATTTCTGGGACTACCATTGATGCACAGGTTTGTAAATACTCTGTTTCTCTAATTTCTTTAGGCTTTGCTTTTTCTTTACTTTCACGACATTATAATTGCGATTAAACTGAGAGAAGCTTGTTACTTTCAATTTCGCAGTTGAGGTATGCAGCTGGAACAAAGGATATGTTGGACAGGTACTTCAAGGGTGAGGATTTCCCTGCTGAAAATTACATTGTCAAGGATGGGGAATTGGCACCTCAGTATCGCTAAATTATTTATGTATAGAGTTGTGTCTAGATTTCTGTGTTAAATAAACTGGCAAGCCGTGTCTTCAATAAGCTGATAAAATTGGCTACTTTATGTTCTTCTAGAACTCTAATGCAGTTTTTCTCCGGGTTAGCTGTAACTTTTGTGATGGAAACATATGTCCTCTTCTGTGATGGAGGTCTATGTATGATCCTCCAGTGTCTTTCTTGAGTCTATAACTGAACTTCCTTGCTGTGGTAGTTGTACTGGTGTTCCTGGACATTTTATGTTTTAAAAAAAATTATCTTCTTGTTTG</genome_strand>
        <mrna_strand>GTCATATTGCAG...........................................................................................................................................................................................................................................GATACAGTGGAGATGTTTGGTACCCACAACCAGCTCCCAAGGACCATCTATGGCGTTACATGCCAAACCAAGCTATGACTCCTCACATTTCTGGGACTACCATTGATGCACAG...............................................................................................................TTGAGGTATGCAGCTGGAACAAAGGATATGTTGGACAGGTACTTCAAGGGTGAGGATTTCCCTGCTGAAAATTACATTGTCAAGGATGGGGAATTGGCACCTCAGTATCGCTAAATTATTTATGTATAGAGTTGTGTCTAGATTTCTGTGTTAAATAAACTGGCAAGCCGTGTCTTCAATAAGCTGATAAAATTGGCTACTTTATGTTCTTCTAGAACTCTAATGCAGTTTTTCTCCGGGTTAGCTGTAACTTTTGTGATGGAAACATATGTCCTCTTCTGTGATGGAGGTCTATGTATGATCCTCCAGTGTCTTTCTTGAGTCTATAACTGAACTTCCTTGCTGTGGTAGTTGTACTGGTGTTCCTGGACATTTTATGTTTTAAAAAAAATTATCTTCTTGTTTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0236E02-u8qcS/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E241436" ref_strand="+" ref_description="SGN-E241436 [cLED-28-P10]">
      <seq>tgtttggtacccacaaccagctcccaaggaccatctatggcgttacatgccaaaccaagctatgactcctcacatttctgggactaccattgatgcacagttgaggtatgcagctggaacaaaggatatgttggacaggtacttcaagggtgaggatttccctgctgaaaattacattgtcaaggatggggaattggcacctcagtatcgctaaattatttatgtatagagttgtgtctagatttctgtgttaaataaactggcaagccgtgtcttcaataagctgataaaattggctactttatgttcttctagaactctaatgcagtttttctccgggttagctgtaacttttgtgatggaaacatatgtcctcttctgtgatggaggtctatgtatgatcctccagtgtctttcttgagtctataactgaacttccttgc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0236E02-u8qcS/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0236E02.1" temp_strand="+" temp_description="C02HBa0236E02.1  AC215430.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0236E02 sequenced_by:kribb upload_account_name:korea">
        <position start="69120" stop="70273"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="69420" g_stop="69519" g_length="100"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="100" r_length="100" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="69520" i_stop="69630" i_length="111">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.989" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="69631" g_stop="69973" g_length="343"/>
          <reference_exon_boundary r_type="cDNA" r_start="101" r_stop="443" r_length="343" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0236E02.1" gen_strand="+" ref_id="SGN-E241436" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>443</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0236E02.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E241436" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="69420" e_stop="69519"/>
          <exon e_start="69631" e_stop="69973"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGTTTGGTACCCACAACCAGCTCCCAAGGACCATCTATGGCGTTACATGCCAAACCAAGCTATGACTCCTCACATTTCTGGGACTACCATTGATGCACAGGTTTGTAAATACTCTGTTTCTCTAATTTCTTTAGGCTTTGCTTTTTCTTTACTTTCACGACATTATAATTGCGATTAAACTGAGAGAAGCTTGTTACTTTCAATTTCGCAGTTGAGGTATGCAGCTGGAACAAAGGATATGTTGGACAGGTACTTCAAGGGTGAGGATTTCCCTGCTGAAAATTACATTGTCAAGGATGGGGAATTGGCACCTCAGTATCGCTAAATTATTTATGTATAGAGTTGTGTCTAGATTTCTGTGTTAAATAAACTGGCAAGCCGTGTCTTCAATAAGCTGATAAAATTGGCTACTTTATGTTCTTCTAGAACTCTAATGCAGTTTTTCTCCGGGTTAGCTGTAACTTTTGTGATGGAAACATATGTCCTCTTCTGTGATGGAGGTCTATGTATGATCCTCCAGTGTCTTTCTTGAGTCTATAACTGAACTTCCTTGC</genome_strand>
        <mrna_strand>TGTTTGGTACCCACAACCAGCTCCCAAGGACCATCTATGGCGTTACATGCCAAACCAAGCTATGACTCCTCACATTTCTGGGACTACCATTGATGCACAG...............................................................................................................TTGAGGTATGCAGCTGGAACAAAGGATATGTTGGACAGGTACTTCAAGGGTGAGGATTTCCCTGCTGAAAATTACATTGTCAAGGATGGGGAATTGGCACCTCAGTATCGCTAAATTATTTATGTATAGAGTTGTGTCTAGATTTCTGTGTTAAATAAACTGGCAAGCCGTGTCTTCAATAAGCTGATAAAATTGGCTACTTTATGTTCTTCTAGAACTCTAATGCAGTTTTTCTCCGGGTTAGCTGTAACTTTTGTGATGGAAACATATGTCCTCTTCTGTGATGGAGGTCTATGTATGATCCTCCAGTGTCTTTCTTGAGTCTATAACTGAACTTCCTTGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0236E02-u8qcS/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E243444" ref_strand="+" ref_description="SGN-E243444 [cLED-34-I12]">
      <seq>tgtttggtacccacaaccagctcccaaggaccatctatggcgttacatgccaaaccaagctatgactcctcacatttctgggactaccattgatgcacagttgaggtatgcagctggaacaaaggatatgttggacaggtacttcaagggtgaggatttccctgctgaaaattacattgtcaaggatggggaattggcacctcagtatcgctaaattatttatgtatagagttgtgtctagatttctgggttaaataaactggcaagccgtgtcttcaataagctgataaaattggctactttatgttcttctagaactctaatgcagtttttctccgggttagctgtaacttttgtgatggaaacatatgtcctcttctgtgatggaggtctatgtatg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0236E02-u8qcS/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0236E02.1" temp_strand="+" temp_description="C02HBa0236E02.1  AC215430.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0236E02 sequenced_by:kribb upload_account_name:korea">
        <position start="69120" stop="70230"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="69420" g_stop="69519" g_length="100"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="100" r_length="100" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="69520" i_stop="69630" i_length="111">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.989" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="69631" g_stop="69930" g_length="300"/>
          <reference_exon_boundary r_type="cDNA" r_start="101" r_stop="400" r_length="300" r_score="0.997"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0236E02.1" gen_strand="+" ref_id="SGN-E243444" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>400</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0236E02.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E243444" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="69420" e_stop="69519"/>
          <exon e_start="69631" e_stop="69930"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGTTTGGTACCCACAACCAGCTCCCAAGGACCATCTATGGCGTTACATGCCAAACCAAGCTATGACTCCTCACATTTCTGGGACTACCATTGATGCACAGGTTTGTAAATACTCTGTTTCTCTAATTTCTTTAGGCTTTGCTTTTTCTTTACTTTCACGACATTATAATTGCGATTAAACTGAGAGAAGCTTGTTACTTTCAATTTCGCAGTTGAGGTATGCAGCTGGAACAAAGGATATGTTGGACAGGTACTTCAAGGGTGAGGATTTCCCTGCTGAAAATTACATTGTCAAGGATGGGGAATTGGCACCTCAGTATCGCTAAATTATTTATGTATAGAGTTGTGTCTAGATTTCTGTGTTAAATAAACTGGCAAGCCGTGTCTTCAATAAGCTGATAAAATTGGCTACTTTATGTTCTTCTAGAACTCTAATGCAGTTTTTCTCCGGGTTAGCTGTAACTTTTGTGATGGAAACATATGTCCTCTTCTGTGATGGAGGTCTATGTATG</genome_strand>
        <mrna_strand>TGTTTGGTACCCACAACCAGCTCCCAAGGACCATCTATGGCGTTACATGCCAAACCAAGCTATGACTCCTCACATTTCTGGGACTACCATTGATGCACAG...............................................................................................................TTGAGGTATGCAGCTGGAACAAAGGATATGTTGGACAGGTACTTCAAGGGTGAGGATTTCCCTGCTGAAAATTACATTGTCAAGGATGGGGAATTGGCACCTCAGTATCGCTAAATTATTTATGTATAGAGTTGTGTCTAGATTTCTGGGTTAAATAAACTGGCAAGCCGTGTCTTCAATAAGCTGATAAAATTGGCTACTTTATGTTCTTCTAGAACTCTAATGCAGTTTTTCTCCGGGTTAGCTGTAACTTTTGTGATGGAAACATATGTCCTCTTCTGTGATGGAGGTCTATGTATG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0236E02-u8qcS/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E232459" ref_strand="+" ref_description="SGN-E232459 [cLEL-5-J6](-)">
      <seq>ccagctcccaaggaccatctatggcgttacatgccaaaccaagctatgactcctcacatttctgggactaccattgatgcacagttgaggtatgcagctggaacaaaggatatgttggacaggtacttcaagggtgaggatttccctgctgaaaattacattgtcaaggatggggaattggcacctcagtatcgctaaattatttatgtatagagttgtgtctagatttctgtgttaaataaactggcaagccgtgtcttcaataagctgataaaattggctactttatgttcttctagaactctaatgcagtttttctccgggttagctgtaacttttgtgatggaaacatatgtcctcttctgtgatggaggtctatgtatgatcctccagtgtctttcttgagtctataactgaacttccttgctgtggtagttgtactggtgttcctggacattttatgttttaaaaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0236E02-u8qcS/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0236E02.1" temp_strand="+" temp_description="C02HBa0236E02.1  AC215430.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0236E02 sequenced_by:kribb upload_account_name:korea">
        <position start="69136" stop="95698"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="69436" g_stop="69519" g_length="84"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="84" r_length="84" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="69520" i_stop="69630" i_length="111">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.989" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="69631" g_stop="70035" g_length="405"/>
          <reference_exon_boundary r_type="cDNA" r_start="85" r_stop="489" r_length="405" r_score="0.968"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0236E02.1" gen_strand="+" ref_id="SGN-E232459" ref_strand="+">
        <total_alignment_score>0.973</total_alignment_score>
        <cumulative_length_of_scored_exons>489</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0236E02.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E232459" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="69436" e_stop="69519"/>
          <exon e_start="69631" e_stop="70035"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCAGCTCCCAAGGACCATCTATGGCGTTACATGCCAAACCAAGCTATGACTCCTCACATTTCTGGGACTACCATTGATGCACAGGTTTGTAAATACTCTGTTTCTCTAATTTCTTTAGGCTTTGCTTTTTCTTTACTTTCACGACATTATAATTGCGATTAAACTGAGAGAAGCTTGTTACTTTCAATTTCGCAGTTGAGGTATGCAGCTGGAACAAAGGATATGTTGGACAGGTACTTCAAGGGTGAGGATTTCCCTGCTGAAAATTACATTGTCAAGGATGGGGAATTGGCACCTCAGTATCGCTAAATTATTTATGTATAGAGTTGTGTCTAGATTTCTGTGTTAAATAAACTGGCAAGCCGTGTCTTCAATAAGCTGATAAAATTGGCTACTTTATGTTCTTCTAGAACTCTAATGCAGTTTTTCTCCGGGTTAGCTGTAACTTTTGTGATGGAAACATATGTCCTCTTCTGTGATGGAGGTCTATGTATGATCCTCCAGTGTCTTTCTTGAGTCTATAACTGAACTTCCTTGCTGTGGTAGTTGTACTGGTGTTCCTGGACATTTTATGTTTTAAAAAAAATTATCTTCTTGTTT</genome_strand>
        <mrna_strand>CCAGCTCCCAAGGACCATCTATGGCGTTACATGCCAAACCAAGCTATGACTCCTCACATTTCTGGGACTACCATTGATGCACAG...............................................................................................................TTGAGGTATGCAGCTGGAACAAAGGATATGTTGGACAGGTACTTCAAGGGTGAGGATTTCCCTGCTGAAAATTACATTGTCAAGGATGGGGAATTGGCACCTCAGTATCGCTAAATTATTTATGTATAGAGTTGTGTCTAGATTTCTGTGTTAAATAAACTGGCAAGCCGTGTCTTCAATAAGCTGATAAAATTGGCTACTTTATGTTCTTCTAGAACTCTAATGCAGTTTTTCTCCGGGTTAGCTGTAACTTTTGTGATGGAAACATATGTCCTCTTCTGTGATGGAGGTCTATGTATGATCCTCCAGTGTCTTTCTTGAGTCTATAACTGAACTTCCTTGCTGTGGTAGTTGTACTGGTGTTCCTGGACATTTTATGTTTTAAAAAAAAAAAAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0236E02-u8qcS/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E404181" ref_strand="-" ref_description="SGN-E404181 [PPC-12-L20]">
      <seq>cagctcccaaggaccatccgtggcgctacatgccaaaccaagctatgactcctcacatttctgggactaccattgatgcacagttgaggtatgcagctggaacaaaggatatgttggacaggtacttcaagggtgaggatttccctgctgaaaattacattgtcaaggatggggaattggcacctcagtatcgctaaatcattaatgtaccttagttgtgcctagatttctgtgtcaaataaactggcaagctgcgtcttcaataagctgataaaattggctacttatgttcttttagaactgtaatgcagtttttcttcggttggctgtatcgtaacttttgcgatggaaacatgtcctcttctgtgatggaggtctatgtatgagcctccagtgtctttcttgagtctataactgggaaacttccttgctatggtagttgtactggtgttgtcctggac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0236E02-u8qcS/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0236E02.1" temp_strand="+" temp_description="C02HBa0236E02.1  AC215430.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0236E02 sequenced_by:kribb upload_account_name:korea">
        <position start="69137" stop="70294"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="69437" g_stop="69519" g_length="83"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="83" r_length="83" r_score="0.964"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="69520" i_stop="69630" i_length="111">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.989" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="69631" g_stop="70001" g_length="371"/>
          <reference_exon_boundary r_type="cDNA" r_start="84" r_stop="461" r_length="378" r_score="0.887"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0236E02.1" gen_strand="+" ref_id="SGN-E404181" ref_strand="-">
        <total_alignment_score>0.901</total_alignment_score>
        <cumulative_length_of_scored_exons>454</cumulative_length_of_scored_exons>
        <coverage percentage="0.985" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0236E02.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E404181" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="69437" e_stop="69519"/>
          <exon e_start="69631" e_stop="70001"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAGCTCCCAAGGACCATCTATGGCGTTACATGCCAAACCAAGCTATGACTCCTCACATTTCTGGGACTACCATTGATGCACAGGTTTGTAAATACTCTGTTTCTCTAATTTCTTTAGGCTTTGCTTTTTCTTTACTTTCACGACATTATAATTGCGATTAAACTGAGAGAAGCTTGTTACTTTCAATTTCGCAGTTGAGGTATGCAGCTGGAACAAAGGATATGTTGGACAGGTACTTCAAGGGTGAGGATTTCCCTGCTGAAAATTACATTGTCAAGGATGGGGAATTGGCACCTCAGTATCGCTAAATTATTTATGTA-TAGAGTTGTGTCTAGATTTCTGTGTTAAATAAACTGGCAAGCCGTGTCTTCAATAAGCTGATAAAATTGGCTACTTTATGTTCTTCTAGAACTCTAATGCAGTTTTTC-TCCG--GGTTAGCT-GTAACTTTTGTGATGGAAACATATGTCCTCTTCTGTGATGGAGGTCTATGTATGATCCTCCAGTGTCTTTCTTGAGTCTATAACT--G-AACTTCCTTGCTGTGGTAGTTGTACTGGTG-T-TCCTGGAC</genome_strand>
        <mrna_strand>CAGCTCCCAAGGACCATCCGTGGCGCTACATGCCAAACCAAGCTATGACTCCTCACATTTCTGGGACTACCATTGATGCACAG...............................................................................................................TTGAGGTATGCAGCTGGAACAAAGGATATGTTGGACAGGTACTTCAAGGGTGAGGATTTCCCTGCTGAAAATTACATTGTCAAGGATGGGGAATTGGCACCTCAGTATCGCTAAATCATTAATGTACCTTAGTTGTGCCTAGATTTCTGTGTCAAATAAACTGGCAAGCTGCGTCTTCAATAAGCTGATAAAATTGGCTAC-TTATGTTCTTTTAGAACTGTAATGCAGTTTTTCTTCGGTTGGCTGTATCGTAACTTTTGCGATGGAAAC--ATGTCCTCTTCTGTGATGGAGGTCTATGTATGAGCCTCCAGTGTCTTTCTTGAGTCTATAACTGGGAAACTTCCTTGCTATGGTAGTTGTACTGGTGTTGTCCTGGAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0236E02-u8qcS/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E267323" ref_strand="-" ref_description="SGN-E267323 [cLEI-17-K21]">
      <seq>agctcccaaggaccatttatggcgttacatgccaaaccaagctatgactcctcacatttctgggactaccattgatgcacagttgaggtatgcagctggaacaaaggatatgttggacaggtacttcaagggtgaggatttccctgctgaaaattacattgtcaaggatggggaattggcacctcagtatcgctaaattatttatgtatagagttgtgtctagatttctgtgttaaataaactggcaagccgtgtcttcaataagctgataaaattggctactttatgttcttctagaactctaatgcagtttttctccgggttagctgtaacttttgtgatggaaacatatgtcctcttctgtgatggaggtctatgtatgatcctccagtgtctttcttgagtctataactgaacttccttgctgtggtagttgtactggtgttcctggacattttatgttttaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0236E02-u8qcS/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0236E02.1" temp_strand="+" temp_description="C02HBa0236E02.1  AC215430.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0236E02 sequenced_by:kribb upload_account_name:korea">
        <position start="69138" stop="70317"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="69438" g_stop="69519" g_length="82"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="82" r_length="82" r_score="0.988"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="69520" i_stop="69630" i_length="111">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.989" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="69631" g_stop="70017" g_length="387"/>
          <reference_exon_boundary r_type="cDNA" r_start="83" r_stop="469" r_length="387" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0236E02.1" gen_strand="+" ref_id="SGN-E267323" ref_strand="-">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>469</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0236E02.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E267323" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="69438" e_stop="69519"/>
          <exon e_start="69631" e_stop="70017"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGCTCCCAAGGACCATCTATGGCGTTACATGCCAAACCAAGCTATGACTCCTCACATTTCTGGGACTACCATTGATGCACAGGTTTGTAAATACTCTGTTTCTCTAATTTCTTTAGGCTTTGCTTTTTCTTTACTTTCACGACATTATAATTGCGATTAAACTGAGAGAAGCTTGTTACTTTCAATTTCGCAGTTGAGGTATGCAGCTGGAACAAAGGATATGTTGGACAGGTACTTCAAGGGTGAGGATTTCCCTGCTGAAAATTACATTGTCAAGGATGGGGAATTGGCACCTCAGTATCGCTAAATTATTTATGTATAGAGTTGTGTCTAGATTTCTGTGTTAAATAAACTGGCAAGCCGTGTCTTCAATAAGCTGATAAAATTGGCTACTTTATGTTCTTCTAGAACTCTAATGCAGTTTTTCTCCGGGTTAGCTGTAACTTTTGTGATGGAAACATATGTCCTCTTCTGTGATGGAGGTCTATGTATGATCCTCCAGTGTCTTTCTTGAGTCTATAACTGAACTTCCTTGCTGTGGTAGTTGTACTGGTGTTCCTGGACATTTTATGTTTTAAAA</genome_strand>
        <mrna_strand>AGCTCCCAAGGACCATTTATGGCGTTACATGCCAAACCAAGCTATGACTCCTCACATTTCTGGGACTACCATTGATGCACAG...............................................................................................................TTGAGGTATGCAGCTGGAACAAAGGATATGTTGGACAGGTACTTCAAGGGTGAGGATTTCCCTGCTGAAAATTACATTGTCAAGGATGGGGAATTGGCACCTCAGTATCGCTAAATTATTTATGTATAGAGTTGTGTCTAGATTTCTGTGTTAAATAAACTGGCAAGCCGTGTCTTCAATAAGCTGATAAAATTGGCTACTTTATGTTCTTCTAGAACTCTAATGCAGTTTTTCTCCGGGTTAGCTGTAACTTTTGTGATGGAAACATATGTCCTCTTCTGTGATGGAGGTCTATGTATGATCCTCCAGTGTCTTTCTTGAGTCTATAACTGAACTTCCTTGCTGTGGTAGTTGTACTGGTGTTCCTGGACATTTTATGTTTTAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0236E02-u8qcS/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E232383" ref_strand="+" ref_description="SGN-E232383 [cLEL-5-J6](-)">
      <seq>agggtgaggatttccctgctgaaaattacattgtcaaggatggggaattggcacctcagtatcgctaaattatttatgtatagagttgtgtctagatttctgtgttaaataaactggcaagccgtgtcttcaataagctgataaaattggctactttatgttcttctagaactctaatgcagtttttctccgggttagctgtaacttttgtgatggaaacatatgtcctcttctgtgatggaggtctatgtatgatcctccagtgtctttcttgagtctataactgaacttccttgctgtggtagttgtactggtgttcctggacattttatgttttaaaaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0236E02-u8qcS/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0236E02.1" temp_strand="+" temp_description="C02HBa0236E02.1  AC215430.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0236E02 sequenced_by:kribb upload_account_name:korea">
        <position start="69377" stop="95698"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="69677" g_stop="70035" g_length="359"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="359" r_length="359" r_score="0.964"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0236E02.1" gen_strand="+" ref_id="SGN-E232383" ref_strand="+">
        <total_alignment_score>0.964</total_alignment_score>
        <cumulative_length_of_scored_exons>359</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0236E02.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E232383" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="69677" e_stop="70035"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGGGTGAGGATTTCCCTGCTGAAAATTACATTGTCAAGGATGGGGAATTGGCACCTCAGTATCGCTAAATTATTTATGTATAGAGTTGTGTCTAGATTTCTGTGTTAAATAAACTGGCAAGCCGTGTCTTCAATAAGCTGATAAAATTGGCTACTTTATGTTCTTCTAGAACTCTAATGCAGTTTTTCTCCGGGTTAGCTGTAACTTTTGTGATGGAAACATATGTCCTCTTCTGTGATGGAGGTCTATGTATGATCCTCCAGTGTCTTTCTTGAGTCTATAACTGAACTTCCTTGCTGTGGTAGTTGTACTGGTGTTCCTGGACATTTTATGTTTTAAAAAAAATTATCTTCTTGTTT</genome_strand>
        <mrna_strand>AGGGTGAGGATTTCCCTGCTGAAAATTACATTGTCAAGGATGGGGAATTGGCACCTCAGTATCGCTAAATTATTTATGTATAGAGTTGTGTCTAGATTTCTGTGTTAAATAAACTGGCAAGCCGTGTCTTCAATAAGCTGATAAAATTGGCTACTTTATGTTCTTCTAGAACTCTAATGCAGTTTTTCTCCGGGTTAGCTGTAACTTTTGTGATGGAAACATATGTCCTCTTCTGTGATGGAGGTCTATGTATGATCCTCCAGTGTCTTTCTTGAGTCTATAACTGAACTTCCTTGCTGTGGTAGTTGTACTGGTGTTCCTGGACATTTTATGTTTTAAAAAAAAAAAAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0236E02-u8qcS/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E262133" ref_strand="+" ref_description="SGN-E262133 [cLEG-58-B13]">
      <seq>tttttttttttttttttttttttttttagcaaacaagaagataattttttttaaaacataaaatgtccaggaacaccagtacaactaccacagcaaggaagttcagttatagactcaagaaagacactggaggatcatacatagacctccatcacagaagaggacatatgtttccatcacaaaagttacagctaacccggagaaaaactgcattagagttctagaagaacataaagtagccaattttatcagcttattgaagacacggcttgccagtttatttaacacagaaatctagacacaactctatacataaataatttagcgatactgagggggcaattccccatccttgacaatgtaattttcagcagg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0236E02-u8qcS/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0236E02.1" temp_strand="-" temp_description="C02HBa0236E02.1  AC215430.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0236E02 sequenced_by:kribb upload_account_name:korea">
        <position start="95700" stop="69391"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="70065" g_stop="69691" g_length="375"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="375" r_length="375" r_score="0.939"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0236E02.1" gen_strand="-" ref_id="SGN-E262133" ref_strand="+">
        <total_alignment_score>0.939</total_alignment_score>
        <cumulative_length_of_scored_exons>375</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0236E02.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E262133" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="70065" e_stop="69691"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATTAACCTAGCGACTGCAACAAATACTAGCAAACAAGAAGATAATTTTTTTTAAAACATAAAATGTCCAGGAACACCAGTACAACTACCACAGCAAGGAAGTTCAGTTATAGACTCAAGAAAGACACTGGAGGATCATACATAGACCTCCATCACAGAAGAGGACATATGTTTCCATCACAAAAGTTACAGCTAACCCGGAGAAAAACTGCATTAGAGTTCTAGAAGAACATAAAGTAGCCAATTTTATCAGCTTATTGAAGACACGGCTTGCCAGTTTATTTAACACAGAAATCTAGACACAACTCTATACATAAATAATTTAGCGATACTGAGGTGCCAATTCCCCATCCTTGACAATGTAATTTTCAGCAGG</genome_strand>
        <mrna_strand>TTTTTTTTTTTTTTTTTTTTTTTTTTTAGCAAACAAGAAGATAATTTTTTTTAAAACATAAAATGTCCAGGAACACCAGTACAACTACCACAGCAAGGAAGTTCAGTTATAGACTCAAGAAAGACACTGGAGGATCATACATAGACCTCCATCACAGAAGAGGACATATGTTTCCATCACAAAAGTTACAGCTAACCCGGAGAAAAACTGCATTAGAGTTCTAGAAGAACATAAAGTAGCCAATTTTATCAGCTTATTGAAGACACGGCTTGCCAGTTTATTTAACACAGAAATCTAGACACAACTCTATACATAAATAATTTAGCGATACTGAGGGGGCAATTCCCCATCCTTGACAATGTAATTTTCAGCAGG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0236E02-u8qcS/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E624225" ref_strand="+" ref_description="SGN-E624225 [GI|33338871]">
      <seq>caccaacagaggagggaggtgagaggaagaagcaggaggaggtagatgacgttgagttagagagggagagaagcaataaaagctgcaaagatatgtaaacactatggtggttgtctcctctctccactctccttcttcttcctcctccatctactgcaactcaatctctccctctcttcgttattttcgacgtttctatacatttccatccacaaggaataataataaagcagcttccaactccaatggcggtgccgtcttgctcgtcaaggcttatatggatgagaccacaaatccaatttccagtttcgctaataaggtcatcggttcactccctgtttttggtctcatagccagaattgtcaatgaggaaggtggtgttggtggtgattttattgattttgctgagttcaggaggcgagtcggtaacaagtgttccattaatgattcaagagctttttatgaatttcgagatcgacgtggcaagacaggggatcctctgtatgtgctactgtgctgttggttagctgctgtaggagctggtttactcaaatctgaggaaattttggaaggggtagcaaggcttagtttagcaaatgatattgaatttgaagagcaaaacttcattgcaatgatgaatgaagcaagaaagaagcgatcaaagttgggagctcctgcacctacaatccccatggaatttcgtgctgagaaagctctggaagctatacatgtgtgttgctatggaagggatctgattgaagaagaagatgaaaaactgctaagtaccatgcttaatgccgtctttcctacagttgggcagcaaaaggtagaaatcattgtcaaagagaaggcaaagagagtggcagatggaactgaagatatcaaatatacagatcccaagcaattatcaaaagaagcagttcagctgcaaatgaaagaccttgaatttctcaagcaaaacagtttgaatcagtgaggcatgaaacttgttatcattctcaaagtaaatttaggtactggtgactaacaccaacaggaagactatcccacaaacattcggtataggaaatcacaggcacatgtcatgaatgacaaatcttcttcgcacaatgctgccaactaattaaacagtgcatgtgtatgctccctgctctctttcttttgtgatcagtctgcaatttctacttgcaattgaaagatatagtggctctgatttgtattcaagaattacctattactaactgttatttactagagttagctgaacaactgttcaaactaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0236E02-u8qcS/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0236E02.1" temp_strand="-" temp_description="C02HBa0236E02.1  AC215430.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0236E02 sequenced_by:kribb upload_account_name:korea">
        <position start="73806" stop="34996"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="73484" g_stop="73423" g_length="62"/>
          <reference_exon_boundary r_type="cDNA" r_start="93" r_stop="155" r_length="63" r_score="0.968"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="73422" i_stop="72079" i_length="1344">
            <donor d_prob="0.962" d_score="1.00"/>
            <acceptor a_prob="0.000" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="72078" g_stop="71759" g_length="320"/>
          <reference_exon_boundary r_type="cDNA" r_start="156" r_stop="487" r_length="332" r_score="0.891"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="71758" i_stop="71682" i_length="77">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.925" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="71681" g_stop="71517" g_length="165"/>
          <reference_exon_boundary r_type="cDNA" r_start="488" r_stop="652" r_length="165" r_score="0.964"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="71516" i_stop="71044" i_length="473">
            <donor d_prob="0.981" d_score="0.92"/>
            <acceptor a_prob="0.983" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="71043" g_stop="70441" g_length="603"/>
          <reference_exon_boundary r_type="cDNA" r_start="653" r_stop="1251" r_length="599" r_score="0.935"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="70440" i_stop="70071" i_length="370">
            <donor d_prob="0.000" d_score="0.90"/>
            <acceptor a_prob="0.618" a_score="0.51"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="70070" g_stop="70024" g_length="47"/>
          <reference_exon_boundary r_type="cDNA" r_start="1252" r_stop="1298" r_length="47" r_score="0.511"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0236E02.1" gen_strand="-" ref_id="SGN-E624225" ref_strand="+">
        <total_alignment_score>0.929</total_alignment_score>
        <cumulative_length_of_scored_exons>1197</cumulative_length_of_scored_exons>
        <coverage percentage="0.922" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0236E02.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E624225" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="73484" e_stop="73423"/>
          <exon e_start="72078" e_stop="71759"/>
          <exon e_start="71681" e_stop="71517"/>
          <exon e_start="71043" e_stop="70441"/>
          <exon e_start="70070" e_stop="70024"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATGT-AACACTATGGTGGTTGTCTCCTCTCTCCACTCTCCTTCTTCTTCCTCCTCCATCTACTGTAACTCAATGGATTTGCCCCTATATTTCCAGACATCTGTTATCACTTAACCCATTACAAGCCCGCTGCCGCAGATATTCCCGTGGCGAGCGATAACCCAGCGCACTATGCGGATGCCATTCGTTATAATGCTCGAACGCCTCTGCAAGGTTCTTTGCTGCCGTTAACCCGTCTGGTTTGGGCATGATACTGATGTAGTCACGCTTTATCGTTTTCACGAAGCTCTCTGCTATTCCGTTACTCTCCGGACTCCGCACCGCCGTGTTCTTCGGTTCAAGTCCCAACATCCGGGCGAACTGGCGTGTTTCATTAGCCCGGTAGCATGAACCATTATCCGTCAGCCACTCCACTGGAGACGACGGAAGATCGTTGCCGAAGCGGCGTTCCACCGCTCCCAGCATGACGTCCTGTACTGTTTCACTGTTGAAGCCGCCGGTAGTGACCGCCCAGTGCAGTGCCTCACGATCACAGCAGTCCAGCGCGAACGTGGACACGCAGTCTCTCTCCGTTATCACAGCAGAACTCGAACCCGTCAGAGCACCATCGCTGATTGCTTTCTTTCACGGCCACTCTGCCCTGTATGTGCCCGGTTTCGATGGCGGTACAGCAGGTTTTCGCTCAAGCAACAGCGCATTCTGGCGCATGATCCGGTAAACACGTTTGGCATTGATCGCAGGCATACCATCAAGTTCTGCCTGTCTGCGAAGCAGCGCCCATACCCGACGATAACCATACGTTGGCAGCTCTCCGATAACATGGTGTATACGGAGAAGCACATCCGTATCATCAGTGTGACGACTGCGGCGGCCATCCATCCCAGTCCATCGGTTCGTCTGAGAATGACGTGCAACTGCGCACGCGACACCCGGAGGACAACGGCTGACTAAGCTTACTCCCCCATTCCCCGGGCAATAAGGGCGCGTGCGCTATCCACTTTTTTGCCCGTCCATATTCAACGGCTTCTTTGAGGAGTTCATTTTCCATCGTTTTCTTGCCGAGCAGGCGCTGGAGTTCTTTAATCTGCTTCATGGCGGCAGCAAGTTCAGAGGCAGGAACAACCTGTTCTCCGGCGGCGACAGCAGTAAGACTTCCTTCCTGGTATTGCTTACGCCAGAGAAATAACTGGCTGGCTGCTACACCATGTTGCCGGGCAACGAGGGAGACCGTCATCCCCGGTTCAAAGCTCTGCTGAACAATTGCGATCTTTTCCTGTGTGGTACGCCGTCTGCGTTTCTCCGGCCCTAAGACATCAATCATCTGTTCTCCAATGACTAGTCTAAAAACTAGTATTAAGACTATCACTTATTTAAGTGATATTGGTTGTCTGGAGATTCAGGGGGCCAGTCTACTCAATCTCTCCCTCTCTTCGTTACTTTCGACGTTTCTATACATTTCCAT-C-C-A-GAA-GA-AAT--A--A--TTCCAACTCCAATGGCGGTGCGGTCTTGCTCGTCAAGGCTTATATGGATGAGACCACAAATCCAATTTCTAGTTTTGCTAATAAGGTCATCGGTTCACTGCCTGTTTTTGGTCTCATAGCCAGAATTGTCAATGAGGAAGGTGGTGTTGGAGGCGATTTTATTGATTTTGCGGAGTTCAGGAGGCGAGTCGGTAACAAGTGTTCCATTAATGATTCAAGAGCTTTTTATGAATTTCGAGATCGACGTGGCAAGGTAATTTTTACTTGCAATCAAGTGACTTGGTTTTATCTATAGATTATTGACCTTGATTTTCCTTGCCTTATTGATAGACAGGGGATCCTCTGTATGTGCTACTGTGTTGTTGGTTAGCTGCAGTAGGAGCTGGTTTACTCAAATCTGAGGAAATTTTGGAAGGGGTAGCAAGGCTTAGTTTAGCAAATGATATTGAATTTGAAGAACAAAACTTCATCGCAATGATGAATGAAGCAAGGGAGGTTCGTAAGATTTCATTTGCCAACGATTTTTAGCTTCTTTTCATTTATGTTACCTTACTTTCAATGCTTATCAGTAAATTTATAGCATACTTACTCGGATACTGTCTTTGAGGCATACTTCAACTTCTGTTTATGCTTCATTCTTTTGATGTGGTACTTAGAACTCTGCCTCCATGTTGTTCGAATCCTCCAAAACTGCATATATTTTAGAGTATCGACACATGCAGACAGTATTCTTGGACGATTCAAGCAGCATAGCTCTGCCTAACTCTTATTGGGAAGCTTGCTTACAATAGTATATCGAGTAAATTTATGTTTGCAGCTATCCCATTACGGGCTTCATTAGATTTAGCACCAAGCACAGAATGTGCACGGTTTGATAGCCATATATCACACTTATATTTGAACTCTCGTTTATGGTCCAGTGTTATACCCAGTACCATTTTTGCTAACATTTTCCTTTACTCGTGCAGAAGCGATCAAAGTTGGGAGCTCCAGCACCTACAATCCCCATGGAATTTCGTGCTGAGAAAGCTCTTGAAGCTATACATGTGTGTTGCTATGGAAGGGATCTGATTGATGAAGAAGATGAAAAACTGCTAAGTACCATGCTTAATGCTGTCTTTCCTACAGTCGGGCGGCAAAAGGTAGAAATCATTGTCAAAGAGAAGGCAAAGAGAATGGCAGATGGAACTGAAGAAATCAAATAT---GAGCCCAAGCAATTATCAAAAGAAGCAGTTCAGATGCAAATGAAAGACCTTGAATTTCTTAAGCAAAACAGTTTGAATCAGTGAGGCATGAAATTTATCATCATTTTTAAAGTAAATTTTAGGTACTGGTGACTAACACCAACAGGAAGATTATCCCACAAACATTCGGTATAGGAAATCACAGCCACATGTCATGAATGACAAATCTTCTTCGCACAATGTCGCCAACTAATTAAAAAACATTGCATGTGTATGCTGCCTGCTCTCTTTCTTTTGTGATCAGTCTGCATTTTCTACTTGCACTTGAAAGATATAGTGGCTCTGATTTGTATTCAAAAATTACCTATTACTATAACTGTAATGTTAATGACGACAGTCTCACGTCGAAAATGAGTAAACTCCTTATTAAGGCTTGAAAATTCCTCCTTTTGAACTAGAACTAGCTTTTGGAGTGTGAATTAGATTTAAGATCTAATTCAAACATGTTATATACTAATTGACTTTTTTATTATAGACAAAAAAGCGTAACTGTAAAATGAACCACTCCAACTTGGGTGTCAAATGGCGCATATATCGCATTTATTCGCTTGTATGTGAAGAAAGAGGTCGTTTAAAAATCTGAAGTTCCAGACTGATGAAGTCGGCTTTTCTTCCCAATAAAGCAAAATATACTGTGATGTCAAATTCTGTTTCACATCATTTCATTATTTTTGCCAAGTTTTTCCTGGCGTCGTAGAAAAGATTAACCTAGCGACTGCAACAAATACTAGCAAACAAGAAGAT</genome_strand>
        <mrna_strand>ATGTAAACACTATGGTGGTTGTCTCCTCTCTCCACTCTCCTTCTTCTTCCTCCTCCATCTACT................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCAACTCAATCTCTCCCTCTCTTCGTTATTTTCGACGTTTCTATACATTTCCATCCACAAGGAATAATAATAAAGCAGCTTCCAACTCCAATGGCGGTGCCGTCTTGCTCGTCAAGGCTTATATGGATGAGACCACAAATCCAATTTCCAGTTTCGCTAATAAGGTCATCGGTTCACTCCCTGTTTTTGGTCTCATAGCCAGAATTGTCAATGAGGAAGGTGGTGTTGGTGGTGATTTTATTGATTTTGCTGAGTTCAGGAGGCGAGTCGGTAACAAGTGTTCCATTAATGATTCAAGAGCTTTTTATGAATTTCGAGATCGACGTGGCAAG.............................................................................ACAGGGGATCCTCTGTATGTGCTACTGTGCTGTTGGTTAGCTGCTGTAGGAGCTGGTTTACTCAAATCTGAGGAAATTTTGGAAGGGGTAGCAAGGCTTAGTTTAGCAAATGATATTGAATTTGAAGAGCAAAACTTCATTGCAATGATGAATGAAGCAAGAAAG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAGCGATCAAAGTTGGGAGCTCCTGCACCTACAATCCCCATGGAATTTCGTGCTGAGAAAGCTCTGGAAGCTATACATGTGTGTTGCTATGGAAGGGATCTGATTGAAGAAGAAGATGAAAAACTGCTAAGTACCATGCTTAATGCCGTCTTTCCTACAGTTGGGCAGCAAAAGGTAGAAATCATTGTCAAAGAGAAGGCAAAGAGAGTGGCAGATGGAACTGAAGATATCAAATATACAGATCCCAAGCAATTATCAAAAGAAGCAGTTCAGCTGCAAATGAAAGACCTTGAATTTCTCAAGCAAAACAGTTTGAATCAGTGAGGCATGAAACTTGTTATCATTCTCAAAGTAAA-TTTAGGTACTGGTGACTAACACCAACAGGAAGACTATCCCACAAACATTCGGTATAGGAAATCACAGGCACATGTCATGAATGACAAATCTTCTTCGCACAATGCTGCCAACTAATT---AAACAGTGCATGTGTATGCTCCCTGCTCTCTTTCTTTTGTGATCAGTCTGCAATTTCTACTTGCAATTGAAAGATATAGTGGCTCTGATTTGTATTCAAGAATTACCTATTAC--TAACTGTTAT-TTA..................................................................................................................................................................................................................................................................................................................................................................................CTAGAGTTAGCTGAACAACTGTTCAAACTAAAAAAAAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0236E02-u8qcS/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E552015" ref_strand="+" ref_description="SGN-E552015 [cTSB-2-J11]">
      <seq>ctacaatccccatggaatttcgtgctgagaaagctcttgaagctatacatgtgtgttgctatggaagggatctgattgatgaagaagatgaaaaactgctaagtaccatgcttaatgctgtctttcctacagtcgggcggcaaaaggtagaaatcattgtcaaagagaaggcaaagagaatggcagatggaactgaagaaatcaaatatgagcccaagcaattatcaaaagaagcagttcagatgcaaatgaaagaccttgaatttcttaagcaaaacagtttgaatcagtgaggcatgaaatttatcatcatttttaaagtaaattttaggtactggtgactaacaccaacaggaagattatcccacaaacattcggtataggaaatcacagccacatgtcatgaatgacaaatcttcttcgcacaatgtcgccaactaattaaaaaacattgcatgtgtatgctgcctgctctctttcttttgtgatcagtctgcattttctacttgcacttgaaagaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0236E02-u8qcS/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0236E02.1" temp_strand="-" temp_description="C02HBa0236E02.1  AC215430.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0236E02 sequenced_by:kribb upload_account_name:korea">
        <position start="71315" stop="70192"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="71015" g_stop="70492" g_length="524"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="524" r_length="524" r_score="0.996"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="70491" i_stop="70293" i_length="199">
            <donor d_prob="0.000" d_score="0.96"/>
            <acceptor a_prob="0.875" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="70292" g_stop="70285" g_length="8"/>
          <reference_exon_boundary r_type="cDNA" r_start="525" r_stop="532" r_length="8" r_score="0.875"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0236E02.1" gen_strand="-" ref_id="SGN-E552015" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>532</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0236E02.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E552015" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="71015" e_stop="70492"/>
          <exon e_start="70292" e_stop="70285"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTACAATCCCCATGGAATTTCGTGCTGAGAAAGCTCTTGAAGCTATACATGTGTGTTGCTATGGAAGGGATCTGATTGATGAAGAAGATGAAAAACTGCTAAGTACCATGCTTAATGCTGTCTTTCCTACAGTCGGGCGGCAAAAGGTAGAAATCATTGTCAAAGAGAAGGCAAAGAGAATGGCAGATGGAACTGAAGAAATCAAATATGAGCCCAAGCAATTATCAAAAGAAGCAGTTCAGATGCAAATGAAAGACCTTGAATTTCTTAAGCAAAACAGTTTGAATCAGTGAGGCATGAAATTTATCATCATTTTTAAAGTAAATTTTAGGTACTGGTGACTAACACCAACAGGAAGATTATCCCACAAACATTCGGTATAGGAAATCACAGCCACATGTCATGAATGACAAATCTTCTTCGCACAATGTCGCCAACTAATTAAAAAACATTGCATGTGTATGCTGCCTGCTCTCTTTCTTTTGTGATCAGTCTGCATTTTCTACTTGCACTTGAAAGATATAGTGGCTCTGATTTGTATTCAAAAATTACCTATTACTATAACTGTAATGTTAATGACGACAGTCTCACGTCGAAAATGAGTAAACTCCTTATTAAGGCTTGAAAATTCCTCCTTTTGAACTAGAACTAGCTTTTGGAGTGTGAATTAGATTTAAGATCTAATTCAAACATGTTATATACTAATTGACTTTTTTATTATAGACAAAAAA</genome_strand>
        <mrna_strand>CTACAATCCCCATGGAATTTCGTGCTGAGAAAGCTCTTGAAGCTATACATGTGTGTTGCTATGGAAGGGATCTGATTGATGAAGAAGATGAAAAACTGCTAAGTACCATGCTTAATGCTGTCTTTCCTACAGTCGGGCGGCAAAAGGTAGAAATCATTGTCAAAGAGAAGGCAAAGAGAATGGCAGATGGAACTGAAGAAATCAAATATGAGCCCAAGCAATTATCAAAAGAAGCAGTTCAGATGCAAATGAAAGACCTTGAATTTCTTAAGCAAAACAGTTTGAATCAGTGAGGCATGAAATTTATCATCATTTTTAAAGTAAATTTTAGGTACTGGTGACTAACACCAACAGGAAGATTATCCCACAAACATTCGGTATAGGAAATCACAGCCACATGTCATGAATGACAAATCTTCTTCGCACAATGTCGCCAACTAATTAAAAAACATTGCATGTGTATGCTGCCTGCTCTCTTTCTTTTGTGATCAGTCTGCATTTTCTACTTGCACTTGAAAGAAAAA.......................................................................................................................................................................................................AAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0236E02-u8qcS/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E370186" ref_strand="+" ref_description="SGN-E370186 [TUS-28-K12](-)">
      <seq>caaaacttcatcgcaatgatgaatgaagcaagggagaagcgatcaaagttgggagctccagcacctacaatccccatggaatttcgtgctgagaaagctcttgaagctatacatgtgtgttgctatggaagggatctgattgatgaagaagatgaaaaactgctaagtaccatgcttaatgctgtctttcctacagtcgggcggcaaaaggtagaaatcattgtcaaagagaaggcaaagagaatggcagatggaactgaagaaatcaaatatgagcccaagcaattatcaaaagaagcagttcagatgcaaatgaaagaccttgaatttcttaagcaaaacagtttgaatcagtgaggcatgaaatttatcatcatttttaaagtaaattttaggtactggtgactaacaccaacaggaagattatcccacaaacattcggtataggaaatcacagccacatgtcatgaatgacaaatcttcttcgcacaatgtcgccaactaattaaaaaacattgcatgtgtatgctgcctgctctctttcttttgtgatcagtctgcattttctacttgcacttgaaagatatagtggctctgatttgtattcaaaaattacctattactataactgtaatgttaatgacgacagtctcaaaacaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0236E02-u8qcS/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0236E02.1" temp_strand="-" temp_description="C02HBa0236E02.1  AC215430.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0236E02 sequenced_by:kribb upload_account_name:korea">
        <position start="71852" stop="70126"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="71552" g_stop="71517" g_length="36"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="36" r_length="36" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="71516" i_stop="71044" i_length="473">
            <donor d_prob="0.981" d_score="0.00"/>
            <acceptor a_prob="0.983" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="71043" g_stop="70407" g_length="637"/>
          <reference_exon_boundary r_type="cDNA" r_start="37" r_stop="673" r_length="637" r_score="0.984"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0236E02.1" gen_strand="-" ref_id="SGN-E370186" ref_strand="+">
        <total_alignment_score>0.984</total_alignment_score>
        <cumulative_length_of_scored_exons>673</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0236E02.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E370186" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="71552" e_stop="71517"/>
          <exon e_start="71043" e_stop="70407"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAAAACTTCATCGCAATGATGAATGAAGCAAGGGAGGTTCGTAAGATTTCATTTGCCAACGATTTTTAGCTTCTTTTCATTTATGTTACCTTACTTTCAATGCTTATCAGTAAATTTATAGCATACTTACTCGGATACTGTCTTTGAGGCATACTTCAACTTCTGTTTATGCTTCATTCTTTTGATGTGGTACTTAGAACTCTGCCTCCATGTTGTTCGAATCCTCCAAAACTGCATATATTTTAGAGTATCGACACATGCAGACAGTATTCTTGGACGATTCAAGCAGCATAGCTCTGCCTAACTCTTATTGGGAAGCTTGCTTACAATAGTATATCGAGTAAATTTATGTTTGCAGCTATCCCATTACGGGCTTCATTAGATTTAGCACCAAGCACAGAATGTGCACGGTTTGATAGCCATATATCACACTTATATTTGAACTCTCGTTTATGGTCCAGTGTTATACCCAGTACCATTTTTGCTAACATTTTCCTTTACTCGTGCAGAAGCGATCAAAGTTGGGAGCTCCAGCACCTACAATCCCCATGGAATTTCGTGCTGAGAAAGCTCTTGAAGCTATACATGTGTGTTGCTATGGAAGGGATCTGATTGATGAAGAAGATGAAAAACTGCTAAGTACCATGCTTAATGCTGTCTTTCCTACAGTCGGGCGGCAAAAGGTAGAAATCATTGTCAAAGAGAAGGCAAAGAGAATGGCAGATGGAACTGAAGAAATCAAATATGAGCCCAAGCAATTATCAAAAGAAGCAGTTCAGATGCAAATGAAAGACCTTGAATTTCTTAAGCAAAACAGTTTGAATCAGTGAGGCATGAAATTTATCATCATTTTTAAAGTAAATTTTAGGTACTGGTGACTAACACCAACAGGAAGATTATCCCACAAACATTCGGTATAGGAAATCACAGCCACATGTCATGAATGACAAATCTTCTTCGCACAATGTCGCCAACTAATTAAAAAACATTGCATGTGTATGCTGCCTGCTCTCTTTCTTTTGTGATCAGTCTGCATTTTCTACTTGCACTTGAAAGATATAGTGGCTCTGATTTGTATTCAAAAATTACCTATTACTATAACTGTAATGTTAATGACGACAGTCTCACGTCGAAAATGAGTAAACT</genome_strand>
        <mrna_strand>CAAAACTTCATCGCAATGATGAATGAAGCAAGGGAG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAGCGATCAAAGTTGGGAGCTCCAGCACCTACAATCCCCATGGAATTTCGTGCTGAGAAAGCTCTTGAAGCTATACATGTGTGTTGCTATGGAAGGGATCTGATTGATGAAGAAGATGAAAAACTGCTAAGTACCATGCTTAATGCTGTCTTTCCTACAGTCGGGCGGCAAAAGGTAGAAATCATTGTCAAAGAGAAGGCAAAGAGAATGGCAGATGGAACTGAAGAAATCAAATATGAGCCCAAGCAATTATCAAAAGAAGCAGTTCAGATGCAAATGAAAGACCTTGAATTTCTTAAGCAAAACAGTTTGAATCAGTGAGGCATGAAATTTATCATCATTTTTAAAGTAAATTTTAGGTACTGGTGACTAACACCAACAGGAAGATTATCCCACAAACATTCGGTATAGGAAATCACAGCCACATGTCATGAATGACAAATCTTCTTCGCACAATGTCGCCAACTAATTAAAAAACATTGCATGTGTATGCTGCCTGCTCTCTTTCTTTTGTGATCAGTCTGCATTTTCTACTTGCACTTGAAAGATATAGTGGCTCTGATTTGTATTCAAAAATTACCTATTACTATAACTGTAATGTTAATGACGACAGTCTCAAAACAAAAAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0236E02-u8qcS/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E409951" ref_strand="+" ref_description="SGN-E409951 [PPI-15-H9]">
      <seq>cacctacaatccccatggaatttcgtgctgagaaagctctggaagctatacatttgtgttgctatggaagggatctgatagaagaagaagatgaaaaactgctaagtaccatgcttaatgctgtctttcctacagttgggcagcaaaaggtagaaattattgtcaaagagaaggcaaagagagtggcagatggaactgaagatatcaaatatacagagcccaagcaattatcaaaagaagcagttcagctgcaaatgaaagaccttgaatttcttaagcaaaacagtttgaatcagtgaggcatgaaacttgttatcattctcaaagtaaatttaggtactggtgactaacaccaacaggaagactatcccacaaacattcggtataggaaatcacaggcacatgtcatgaatgacaaatcttcttcgcacaatgcttccaactaattaaacagtgcatgtgtatgctccctgctctctttcttttgtgattagtctgcattttctacttgcaattgaaagatatagtggctctgatttgtattcaagaattacctattactaactgttatataaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0236E02-u8qcS/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0236E02.1" temp_strand="-" temp_description="C02HBa0236E02.1  AC215430.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0236E02 sequenced_by:kribb upload_account_name:korea">
        <position start="71318" stop="70140"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="71018" g_stop="70433" g_length="586"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="583" r_length="583" r_score="0.923"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0236E02.1" gen_strand="-" ref_id="SGN-E409951" ref_strand="+">
        <total_alignment_score>0.923</total_alignment_score>
        <cumulative_length_of_scored_exons>586</cumulative_length_of_scored_exons>
        <coverage percentage="1.005" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0236E02.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E409951" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="71018" e_stop="70433"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CACCTACAATCCCCATGGAATTTCGTGCTGAGAAAGCTCTTGAAGCTATACATGTGTGTTGCTATGGAAGGGATCTGATTGATGAAGAAGATGAAAAACTGCTAAGTACCATGCTTAATGCTGTCTTTCCTACAGTCGGGCGGCAAAAGGTAGAAATCATTGTCAAAGAGAAGGCAAAGAGAATGGCAGATGGAACTGAAGAAATCAAATAT---GAGCCCAAGCAATTATCAAAAGAAGCAGTTCAGATGCAAATGAAAGACCTTGAATTTCTTAAGCAAAACAGTTTGAATCAGTGAGGCATGAAATTTATCATCATTTTTAAAGTAAATTTTAGGTACTGGTGACTAACACCAACAGGAAGATTATCCCACAAACATTCGGTATAGGAAATCACAGCCACATGTCATGAATGACAAATCTTCTTCGCACAATGTCGCCAACTAATTAAAAAACATTGCATGTGTATGCTGCCTGCTCTCTTTCTTTTGTGATCAGTCTGCATTTTCTACTTGCACTTGAAAGATATAGTGGCTCTGATTTGTATTCAAAAATTACCTATTACTATAACTGTAATGTTAATGACGAC</genome_strand>
        <mrna_strand>CACCTACAATCCCCATGGAATTTCGTGCTGAGAAAGCTCTGGAAGCTATACATTTGTGTTGCTATGGAAGGGATCTGATAGAAGAAGAAGATGAAAAACTGCTAAGTACCATGCTTAATGCTGTCTTTCCTACAGTTGGGCAGCAAAAGGTAGAAATTATTGTCAAAGAGAAGGCAAAGAGAGTGGCAGATGGAACTGAAGATATCAAATATACAGAGCCCAAGCAATTATCAAAAGAAGCAGTTCAGCTGCAAATGAAAGACCTTGAATTTCTTAAGCAAAACAGTTTGAATCAGTGAGGCATGAAACTTGTTATCATTCTCAAAGTAAA-TTTAGGTACTGGTGACTAACACCAACAGGAAGACTATCCCACAAACATTCGGTATAGGAAATCACAGGCACATGTCATGAATGACAAATCTTCTTCGCACAATGCTTCCAACTAATT---AAACAGTGCATGTGTATGCTCCCTGCTCTCTTTCTTTTGTGATTAGTCTGCATTTTCTACTTGCAATTGAAAGATATAGTGGCTCTGATTTGTATTCAAGAATTACCTATTAC--TAACTGTTATATAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0236E02-u8qcS/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E404919" ref_strand="+" ref_description="SGN-E404919 [PPC-15-F10]">
      <seq>ggtgactaacaccaacaggaagactatcccacaaacattcggtataggaaatcacaggcacatgtcatgaatgacaaatcttcttcgcacaatgctgccaactaattaaacagtgcatgtgtatgctccctgctctctttcttttgtgatcagtctgcaatttctacttgcaattgaaagatatagtggctctgatttgtattcnaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0236E02-u8qcS/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0236E02.1" temp_strand="-" temp_description="C02HBa0236E02.1  AC215430.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0236E02 sequenced_by:kribb upload_account_name:korea">
        <position start="70979" stop="70168"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="70679" g_stop="70455" g_length="225"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="222" r_length="222" r_score="0.907"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0236E02.1" gen_strand="-" ref_id="SGN-E404919" ref_strand="+">
        <total_alignment_score>0.907</total_alignment_score>
        <cumulative_length_of_scored_exons>225</cumulative_length_of_scored_exons>
        <coverage percentage="1.014" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0236E02.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E404919" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="70679" e_stop="70455"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGTGACTAACACCAACAGGAAGATTATCCCACAAACATTCGGTATAGGAAATCACAGCCACATGTCATGAATGACAAATCTTCTTCGCACAATGTCGCCAACTAATTAAAAAACATTGCATGTGTATGCTGCCTGCTCTCTTTCTTTTGTGATCAGTCTGCATTTTCTACTTGCACTTGAAAGATATAGTGGCTCTGATTTGTATTCAAAAATTACCTATTACTA</genome_strand>
        <mrna_strand>GGTGACTAACACCAACAGGAAGACTATCCCACAAACATTCGGTATAGGAAATCACAGGCACATGTCATGAATGACAAATCTTCTTCGCACAATGCTGCCAACTAATT---AAACAGTGCATGTGTATGCTCCCTGCTCTCTTTCTTTTGTGATCAGTCTGCAATTTCTACTTGCAATTGAAAGATATAGTGGCTCTGATTTGTATTCNAAAAAAAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0236E02-u8qcS/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E434100" ref_strand="+" ref_description="SGN-E434100 [STM-59-O6]">
      <seq>ggtgactaacaccaacaggaagactatcccacaaacattcggtataggaaatcacaggcacatgtcatgaatgacaaatcttcttcgcacaatgctgccaactaattaaacagtgcatgtgtatgctccctgctctctttcttttgtgatcagtctgcaatttctacttgcaattgaaagatatagtggctctgatttgtattcaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0236E02-u8qcS/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0236E02.1" temp_strand="-" temp_description="C02HBa0236E02.1  AC215430.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0236E02 sequenced_by:kribb upload_account_name:korea">
        <position start="70979" stop="70168"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="70679" g_stop="70455" g_length="225"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="222" r_length="222" r_score="0.911"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0236E02.1" gen_strand="-" ref_id="SGN-E434100" ref_strand="+">
        <total_alignment_score>0.911</total_alignment_score>
        <cumulative_length_of_scored_exons>225</cumulative_length_of_scored_exons>
        <coverage percentage="1.014" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0236E02.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E434100" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="70679" e_stop="70455"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGTGACTAACACCAACAGGAAGATTATCCCACAAACATTCGGTATAGGAAATCACAGCCACATGTCATGAATGACAAATCTTCTTCGCACAATGTCGCCAACTAATTAAAAAACATTGCATGTGTATGCTGCCTGCTCTCTTTCTTTTGTGATCAGTCTGCATTTTCTACTTGCACTTGAAAGATATAGTGGCTCTGATTTGTATTCAAAAATTACCTATTACTA</genome_strand>
        <mrna_strand>GGTGACTAACACCAACAGGAAGACTATCCCACAAACATTCGGTATAGGAAATCACAGGCACATGTCATGAATGACAAATCTTCTTCGCACAATGCTGCCAACTAATT---AAACAGTGCATGTGTATGCTCCCTGCTCTCTTTCTTTTGTGATCAGTCTGCAATTTCTACTTGCAATTGAAAGATATAGTGGCTCTGATTTGTATTCAAAAAAAAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0236E02-u8qcS/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E619850" ref_strand="+" ref_description="SGN-E619850 [70544]">
      <seq>tttttttatctttcaattgcaagtagaaattgcagactgatcacaaaagaaagagagcaggcagcatacacatgcactgtttaattagttggcagcattgtgcgaagaagatttgtcattcatgacatgtgcctgtgatttcctataccgaatgtttgtgggatagtcttcctgttggtgttagtcaccagtacctaaatttactttgagaatgataacaagtttcatgcctcactgattcaaactgttttgcttgagaaattcaaggtctttcatttgcagctgaactgcttcttttgataattgcttgggatctgtatatttgatatcttcagttccatctgccactctct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0236E02-u8qcS/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0236E02.1" temp_strand="+" temp_description="C02HBa0236E02.1  AC215430.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0236E02 sequenced_by:kribb upload_account_name:korea">
        <position start="70192" stop="71139"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="70488" g_stop="70841" g_length="354"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="353" r_length="353" r_score="0.910"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0236E02.1" gen_strand="+" ref_id="SGN-E619850" ref_strand="+">
        <total_alignment_score>0.910</total_alignment_score>
        <cumulative_length_of_scored_exons>354</cumulative_length_of_scored_exons>
        <coverage percentage="1.003" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0236E02.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E619850" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="70488" e_stop="70841"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCACTATATCTTTCAAGTGCAAGTAGAAAATGCAGACTGATCACAAAAGAAAGAGAGCAGGCAGCATACACATGCAATGTTTTTTAATTAGTTGGCGACATTGTGCGAAGAAGATTTGTCATTCATGACATGTGGCTGTGATTTCCTATACCGAATGTTTGTGGGATAATCTTCCTGTTGGTGTTAGTCACCAGTACCTAAAATTTACTTTAAAAATGATGATAAATTTCATGCCTCACTGATTCAAACTGTTTTGCTTAAGAAATTCAAGGTCTTTCATTTGCATCTGAACTGCTTCTTTTGATAATTGCTTGGG--CT-CATATTTGATTTCTTCAGTTCCATCTGCCATTCTCT</genome_strand>
        <mrna_strand>TTTTTTTATCTTTCAATTGCAAGTAGAAATTGCAGACTGATCACAAAAGAAAGAGAGCAGGCAGCATACACATGCACTG---TTTAATTAGTTGGCAGCATTGTGCGAAGAAGATTTGTCATTCATGACATGTGCCTGTGATTTCCTATACCGAATGTTTGTGGGATAGTCTTCCTGTTGGTGTTAGTCACCAGTACCT-AAATTTACTTTGAGAATGATAACAAGTTTCATGCCTCACTGATTCAAACTGTTTTGCTTGAGAAATTCAAGGTCTTTCATTTGCAGCTGAACTGCTTCTTTTGATAATTGCTTGGGATCTGTATATTTGATATCTTCAGTTCCATCTGCCACTCTCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0236E02-u8qcS/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E281267" ref_strand="+" ref_description="SGN-E281267 [cLEL-1-A16](-)">
      <seq>ttttttttttttttttttttagaaaatgcagactgatcacaaaagaaagagagcaggcagcatacacatgcaatgttttttaattagttggcgacattgtgcgaagaagatttgtcattcatgacatgtggctgtgatttcctataccgaatgtttgtgggataatcttcctgttggtgttagtcagcagtacctaaaatttactttaaaaatgatgataaatttcatgcctcactgattcaaactgttttgcttaagctcgtgc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0236E02-u8qcS/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0236E02.1" temp_strand="+" temp_description="C02HBa0236E02.1  AC215430.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0236E02 sequenced_by:kribb upload_account_name:korea">
        <position start="34996" stop="71049"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="70492" g_stop="70756" g_length="265"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="265" r_length="265" r_score="0.928"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0236E02.1" gen_strand="+" ref_id="SGN-E281267" ref_strand="+">
        <total_alignment_score>0.928</total_alignment_score>
        <cumulative_length_of_scored_exons>265</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0236E02.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E281267" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="70492" e_stop="70756"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TATATCTTTCAAGTGCAAGTAGAAAATGCAGACTGATCACAAAAGAAAGAGAGCAGGCAGCATACACATGCAATGTTTTTTAATTAGTTGGCGACATTGTGCGAAGAAGATTTGTCATTCATGACATGTGGCTGTGATTTCCTATACCGAATGTTTGTGGGATAATCTTCCTGTTGGTGTTAGTCACCAGTACCTAAAATTTACTTTAAAAATGATGATAAATTTCATGCCTCACTGATTCAAACTGTTTTGCTTAAGAAATTCA</genome_strand>
        <mrna_strand>TTTTTTTTTTTTTTTTTTTTAGAAAATGCAGACTGATCACAAAAGAAAGAGAGCAGGCAGCATACACATGCAATGTTTTTTAATTAGTTGGCGACATTGTGCGAAGAAGATTTGTCATTCATGACATGTGGCTGTGATTTCCTATACCGAATGTTTGTGGGATAATCTTCCTGTTGGTGTTAGTCAGCAGTACCTAAAATTTACTTTAAAAATGATGATAAATTTCATGCCTCACTGATTCAAACTGTTTTGCTTAAGCTCGTGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0236E02-u8qcS/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E202904" ref_strand="+" ref_description="SGN-E202904 [cLEB-1-P1]">
      <seq>gcacgagcttaagcaaaacagtttgaatcagtgaggcatgaaatttatcatcatttttaaagtaaattctaggtactggtgactaacaccaacaggaagattatcccacaaacattcggtataggaaatcacagccacatgtcatgaatgacaaatcttcttcgcacaatgtcgccaactaattaaaaaacattgcatgtgtatgctgcctgctctctttcttttgtgatcagtctgcattttctaaaaaaaaaaaagaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0236E02-u8qcS/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0236E02.1" temp_strand="-" temp_description="C02HBa0236E02.1  AC215430.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0236E02 sequenced_by:kribb upload_account_name:korea">
        <position start="71049" stop="70211"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="70756" g_stop="70511" g_length="246"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="246" r_length="246" r_score="0.972"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="247" polyA_stop="265"/>
      <MATCH_line gen_id="C02HBa0236E02.1" gen_strand="-" ref_id="SGN-E202904" ref_strand="+">
        <total_alignment_score>0.972</total_alignment_score>
        <cumulative_length_of_scored_exons>246</cumulative_length_of_scored_exons>
        <coverage percentage="0.928" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0236E02.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E202904" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="70756" e_stop="70511"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGAATTTCTTAAGCAAAACAGTTTGAATCAGTGAGGCATGAAATTTATCATCATTTTTAAAGTAAATTTTAGGTACTGGTGACTAACACCAACAGGAAGATTATCCCACAAACATTCGGTATAGGAAATCACAGCCACATGTCATGAATGACAAATCTTCTTCGCACAATGTCGCCAACTAATTAAAAAACATTGCATGTGTATGCTGCCTGCTCTCTTTCTTTTGTGATCAGTCTGCATTTTCTA</genome_strand>
        <mrna_strand>GCACGAGCTTAAGCAAAACAGTTTGAATCAGTGAGGCATGAAATTTATCATCATTTTTAAAGTAAATTCTAGGTACTGGTGACTAACACCAACAGGAAGATTATCCCACAAACATTCGGTATAGGAAATCACAGCCACATGTCATGAATGACAAATCTTCTTCGCACAATGTCGCCAACTAATTAAAAAACATTGCATGTGTATGCTGCCTGCTCTCTTTCTTTTGTGATCAGTCTGCATTTTCTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0236E02-u8qcS/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E346807" ref_strand="+" ref_description="SGN-E346807 [cTOF-32-M10]">
      <seq>tgttggaggcgattttattgattttgcggagttcaggaggcgagtcggtaacaagtgttccattaatgattcaagagctttttatgaatttcgagatcgacgtggcaagacaggggatcctctgtatgtgctactgtgttgttggttagctgcagtaggagctggtttactcaaatctgaggaaattttggaaggggtagcaaggcttagtttagcaaatgatattgaatttgaagaacaaaacttcatcgcaatgatgaatgaagcaagggagaagcgatcaaagttgggagctccagcacctacaatccccatggaatttcgtgctgagaaagctcttgaagctatacatgtgtgttgctatggaagggatctgattgatgaagaagatgaaaaactgctaagtaccatgcttaatgctgtctttcctacagtcgggcggcaaaaggtagaaatcattgtcaaagagaaggcaaagagaatggcagatggaactgaagaaatcaaatatgagcccaagcaattatcaaaagaagcagttcagatgcaaatgaaagaccttgaatttcttaagcaaaacagtttgaatcagtgaggcatgaaatttatcatcatttttaaagtaaattttaggtactggtgactaacaccaacaggaagattatcccacaaacattcngtataggaaatcacagccacatgtcatgaatgacaaatcttcttcgcacaatgtcgccaactaattaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0236E02-u8qcS/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0236E02.1" temp_strand="-" temp_description="C02HBa0236E02.1  AC215430.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0236E02 sequenced_by:kribb upload_account_name:korea">
        <position start="72167" stop="70267"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="71867" g_stop="71759" g_length="109"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="109" r_length="109" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="71758" i_stop="71682" i_length="77">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.925" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="71681" g_stop="71517" g_length="165"/>
          <reference_exon_boundary r_type="cDNA" r_start="110" r_stop="274" r_length="165" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="71516" i_stop="71044" i_length="473">
            <donor d_prob="0.981" d_score="1.00"/>
            <acceptor a_prob="0.983" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="71043" g_stop="70567" g_length="477"/>
          <reference_exon_boundary r_type="cDNA" r_start="275" r_stop="751" r_length="477" r_score="0.998"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0236E02.1" gen_strand="-" ref_id="SGN-E346807" ref_strand="+">
        <total_alignment_score>0.999</total_alignment_score>
        <cumulative_length_of_scored_exons>751</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0236E02.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E346807" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="71867" e_stop="71759"/>
          <exon e_start="71681" e_stop="71517"/>
          <exon e_start="71043" e_stop="70567"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGTTGGAGGCGATTTTATTGATTTTGCGGAGTTCAGGAGGCGAGTCGGTAACAAGTGTTCCATTAATGATTCAAGAGCTTTTTATGAATTTCGAGATCGACGTGGCAAGGTAATTTTTACTTGCAATCAAGTGACTTGGTTTTATCTATAGATTATTGACCTTGATTTTCCTTGCCTTATTGATAGACAGGGGATCCTCTGTATGTGCTACTGTGTTGTTGGTTAGCTGCAGTAGGAGCTGGTTTACTCAAATCTGAGGAAATTTTGGAAGGGGTAGCAAGGCTTAGTTTAGCAAATGATATTGAATTTGAAGAACAAAACTTCATCGCAATGATGAATGAAGCAAGGGAGGTTCGTAAGATTTCATTTGCCAACGATTTTTAGCTTCTTTTCATTTATGTTACCTTACTTTCAATGCTTATCAGTAAATTTATAGCATACTTACTCGGATACTGTCTTTGAGGCATACTTCAACTTCTGTTTATGCTTCATTCTTTTGATGTGGTACTTAGAACTCTGCCTCCATGTTGTTCGAATCCTCCAAAACTGCATATATTTTAGAGTATCGACACATGCAGACAGTATTCTTGGACGATTCAAGCAGCATAGCTCTGCCTAACTCTTATTGGGAAGCTTGCTTACAATAGTATATCGAGTAAATTTATGTTTGCAGCTATCCCATTACGGGCTTCATTAGATTTAGCACCAAGCACAGAATGTGCACGGTTTGATAGCCATATATCACACTTATATTTGAACTCTCGTTTATGGTCCAGTGTTATACCCAGTACCATTTTTGCTAACATTTTCCTTTACTCGTGCAGAAGCGATCAAAGTTGGGAGCTCCAGCACCTACAATCCCCATGGAATTTCGTGCTGAGAAAGCTCTTGAAGCTATACATGTGTGTTGCTATGGAAGGGATCTGATTGATGAAGAAGATGAAAAACTGCTAAGTACCATGCTTAATGCTGTCTTTCCTACAGTCGGGCGGCAAAAGGTAGAAATCATTGTCAAAGAGAAGGCAAAGAGAATGGCAGATGGAACTGAAGAAATCAAATATGAGCCCAAGCAATTATCAAAAGAAGCAGTTCAGATGCAAATGAAAGACCTTGAATTTCTTAAGCAAAACAGTTTGAATCAGTGAGGCATGAAATTTATCATCATTTTTAAAGTAAATTTTAGGTACTGGTGACTAACACCAACAGGAAGATTATCCCACAAACATTCGGTATAGGAAATCACAGCCACATGTCATGAATGACAAATCTTCTTCGCACAATGTCGCCAACTAATTAAAAAA</genome_strand>
        <mrna_strand>TGTTGGAGGCGATTTTATTGATTTTGCGGAGTTCAGGAGGCGAGTCGGTAACAAGTGTTCCATTAATGATTCAAGAGCTTTTTATGAATTTCGAGATCGACGTGGCAAG.............................................................................ACAGGGGATCCTCTGTATGTGCTACTGTGTTGTTGGTTAGCTGCAGTAGGAGCTGGTTTACTCAAATCTGAGGAAATTTTGGAAGGGGTAGCAAGGCTTAGTTTAGCAAATGATATTGAATTTGAAGAACAAAACTTCATCGCAATGATGAATGAAGCAAGGGAG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAGCGATCAAAGTTGGGAGCTCCAGCACCTACAATCCCCATGGAATTTCGTGCTGAGAAAGCTCTTGAAGCTATACATGTGTGTTGCTATGGAAGGGATCTGATTGATGAAGAAGATGAAAAACTGCTAAGTACCATGCTTAATGCTGTCTTTCCTACAGTCGGGCGGCAAAAGGTAGAAATCATTGTCAAAGAGAAGGCAAAGAGAATGGCAGATGGAACTGAAGAAATCAAATATGAGCCCAAGCAATTATCAAAAGAAGCAGTTCAGATGCAAATGAAAGACCTTGAATTTCTTAAGCAAAACAGTTTGAATCAGTGAGGCATGAAATTTATCATCATTTTTAAAGTAAATTTTAGGTACTGGTGACTAACACCAACAGGAAGATTATCCCACAAACATTCNGTATAGGAAATCACAGCCACATGTCATGAATGACAAATCTTCTTCGCACAATGTCGCCAACTAATTAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0236E02-u8qcS/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E370187" ref_strand="+" ref_description="SGN-E370187 [TUS-28-K12]">
      <seq>ggatgagaccacaaatccaatttctagttttgctaataaggtcatcggttcactgcctgtttttggtctcatagccagaattgtcaatgaggaaggtggtgttggaggcgattttattgattttgcggagttcaggaggcgagtcggtaacaagtgttccattaatgattcaagagctttttatgaatttcgagatcgacgtggcaagacaggggatcctctgtatgtgctactgtgttgttggttagctgcagtaggagctggtttactcaaatctgaggaaattttggaaggggtagcaaggcttagtttagcaaatgatattgaatttgaagaacaaaacttcatcgcaatgatgaatgaagcaagggagaagcgatcaaagttgggagctccagcacctacaatccccatggaatttcgtgctgagaaagctcttgaagctatacatgtgtgttgctatggaagggatctgattgatgaagaagatgaaaaactgctaagtaccatgcttaatgctgtctttcctacagtcgggcggcaaaaggtagaaatcattgtcaaagagaaggcaaagagaatggcagatggaactgaagaaatcaaatatgagcccaagcaattatcaaagaagcagttcagatgcaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0236E02-u8qcS/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0236E02.1" temp_strand="-" temp_description="C02HBa0236E02.1  AC215430.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0236E02 sequenced_by:kribb upload_account_name:korea">
        <position start="72266" stop="70468"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="71966" g_stop="71759" g_length="208"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="208" r_length="208" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="71758" i_stop="71682" i_length="77">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.925" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="71681" g_stop="71517" g_length="165"/>
          <reference_exon_boundary r_type="cDNA" r_start="209" r_stop="373" r_length="165" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="71516" i_stop="71044" i_length="473">
            <donor d_prob="0.981" d_score="1.00"/>
            <acceptor a_prob="0.983" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="71043" g_stop="70768" g_length="276"/>
          <reference_exon_boundary r_type="cDNA" r_start="374" r_stop="648" r_length="275" r_score="0.996"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0236E02.1" gen_strand="-" ref_id="SGN-E370187" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>649</cumulative_length_of_scored_exons>
        <coverage percentage="1.002" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0236E02.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E370187" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="71966" e_stop="71759"/>
          <exon e_start="71681" e_stop="71517"/>
          <exon e_start="71043" e_stop="70768"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGATGAGACCACAAATCCAATTTCTAGTTTTGCTAATAAGGTCATCGGTTCACTGCCTGTTTTTGGTCTCATAGCCAGAATTGTCAATGAGGAAGGTGGTGTTGGAGGCGATTTTATTGATTTTGCGGAGTTCAGGAGGCGAGTCGGTAACAAGTGTTCCATTAATGATTCAAGAGCTTTTTATGAATTTCGAGATCGACGTGGCAAGGTAATTTTTACTTGCAATCAAGTGACTTGGTTTTATCTATAGATTATTGACCTTGATTTTCCTTGCCTTATTGATAGACAGGGGATCCTCTGTATGTGCTACTGTGTTGTTGGTTAGCTGCAGTAGGAGCTGGTTTACTCAAATCTGAGGAAATTTTGGAAGGGGTAGCAAGGCTTAGTTTAGCAAATGATATTGAATTTGAAGAACAAAACTTCATCGCAATGATGAATGAAGCAAGGGAGGTTCGTAAGATTTCATTTGCCAACGATTTTTAGCTTCTTTTCATTTATGTTACCTTACTTTCAATGCTTATCAGTAAATTTATAGCATACTTACTCGGATACTGTCTTTGAGGCATACTTCAACTTCTGTTTATGCTTCATTCTTTTGATGTGGTACTTAGAACTCTGCCTCCATGTTGTTCGAATCCTCCAAAACTGCATATATTTTAGAGTATCGACACATGCAGACAGTATTCTTGGACGATTCAAGCAGCATAGCTCTGCCTAACTCTTATTGGGAAGCTTGCTTACAATAGTATATCGAGTAAATTTATGTTTGCAGCTATCCCATTACGGGCTTCATTAGATTTAGCACCAAGCACAGAATGTGCACGGTTTGATAGCCATATATCACACTTATATTTGAACTCTCGTTTATGGTCCAGTGTTATACCCAGTACCATTTTTGCTAACATTTTCCTTTACTCGTGCAGAAGCGATCAAAGTTGGGAGCTCCAGCACCTACAATCCCCATGGAATTTCGTGCTGAGAAAGCTCTTGAAGCTATACATGTGTGTTGCTATGGAAGGGATCTGATTGATGAAGAAGATGAAAAACTGCTAAGTACCATGCTTAATGCTGTCTTTCCTACAGTCGGGCGGCAAAAGGTAGAAATCATTGTCAAAGAGAAGGCAAAGAGAATGGCAGATGGAACTGAAGAAATCAAATATGAGCCCAAGCAATTATCAAAAGAAGCAGTTCAGATGCAA</genome_strand>
        <mrna_strand>GGATGAGACCACAAATCCAATTTCTAGTTTTGCTAATAAGGTCATCGGTTCACTGCCTGTTTTTGGTCTCATAGCCAGAATTGTCAATGAGGAAGGTGGTGTTGGAGGCGATTTTATTGATTTTGCGGAGTTCAGGAGGCGAGTCGGTAACAAGTGTTCCATTAATGATTCAAGAGCTTTTTATGAATTTCGAGATCGACGTGGCAAG.............................................................................ACAGGGGATCCTCTGTATGTGCTACTGTGTTGTTGGTTAGCTGCAGTAGGAGCTGGTTTACTCAAATCTGAGGAAATTTTGGAAGGGGTAGCAAGGCTTAGTTTAGCAAATGATATTGAATTTGAAGAACAAAACTTCATCGCAATGATGAATGAAGCAAGGGAG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAGCGATCAAAGTTGGGAGCTCCAGCACCTACAATCCCCATGGAATTTCGTGCTGAGAAAGCTCTTGAAGCTATACATGTGTGTTGCTATGGAAGGGATCTGATTGATGAAGAAGATGAAAAACTGCTAAGTACCATGCTTAATGCTGTCTTTCCTACAGTCGGGCGGCAAAAGGTAGAAATCATTGTCAAAGAGAAGGCAAAGAGAATGGCAGATGGAACTGAAGAAATCAAATATGAGCCCAAGCAATTATC-AAAGAAGCAGTTCAGATGCAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0236E02-u8qcS/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E271844" ref_strand="+" ref_description="SGN-E271844 [cLEM-8-D13]">
      <seq>ggatgagaccacaaatccaatttctagttttgctaataaggtcatcggttcactgcctgtttttggtctcatagccagaattgtcaatgaggaaggtggtgttggaggcgattttattgattttgcggagttcaggaggcgagtcggtaacaagtgttccattaatgattcaagagctttttatgaatttcgagatcgacgtggcaagacaggggatcctctgtatgtgctactgtgttgttggttagctgcagtaggagctggtttactcaaatctgaggaaattttggaaggggtagcaaggcttagtttagcaaatgatattgaatttgaagaacaaaacttcatcgcaatgatgaatgaagcaagggagaagcgatcaaagttgggagctccagcacctacaatccccatggaatttcgtgctgagaaagctcttgaagctatacatgtgtgttgctatggaagggatctgattgatgaagaagatgaaaaactgctaagtaccatgcttaatgctgtctttcctacagtcgggcggcaaaaggtagaaatcattgtcaaagagaaggcaaagagaatggcagatggaactg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0236E02-u8qcS/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0236E02.1" temp_strand="-" temp_description="C02HBa0236E02.1  AC215430.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0236E02 sequenced_by:kribb upload_account_name:korea">
        <position start="72266" stop="70521"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="71966" g_stop="71759" g_length="208"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="208" r_length="208" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="71758" i_stop="71682" i_length="77">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.925" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="71681" g_stop="71517" g_length="165"/>
          <reference_exon_boundary r_type="cDNA" r_start="209" r_stop="373" r_length="165" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="71516" i_stop="71044" i_length="473">
            <donor d_prob="0.981" d_score="1.00"/>
            <acceptor a_prob="0.983" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="71043" g_stop="70821" g_length="223"/>
          <reference_exon_boundary r_type="cDNA" r_start="374" r_stop="596" r_length="223" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0236E02.1" gen_strand="-" ref_id="SGN-E271844" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>596</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0236E02.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E271844" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="71966" e_stop="71759"/>
          <exon e_start="71681" e_stop="71517"/>
          <exon e_start="71043" e_stop="70821"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGATGAGACCACAAATCCAATTTCTAGTTTTGCTAATAAGGTCATCGGTTCACTGCCTGTTTTTGGTCTCATAGCCAGAATTGTCAATGAGGAAGGTGGTGTTGGAGGCGATTTTATTGATTTTGCGGAGTTCAGGAGGCGAGTCGGTAACAAGTGTTCCATTAATGATTCAAGAGCTTTTTATGAATTTCGAGATCGACGTGGCAAGGTAATTTTTACTTGCAATCAAGTGACTTGGTTTTATCTATAGATTATTGACCTTGATTTTCCTTGCCTTATTGATAGACAGGGGATCCTCTGTATGTGCTACTGTGTTGTTGGTTAGCTGCAGTAGGAGCTGGTTTACTCAAATCTGAGGAAATTTTGGAAGGGGTAGCAAGGCTTAGTTTAGCAAATGATATTGAATTTGAAGAACAAAACTTCATCGCAATGATGAATGAAGCAAGGGAGGTTCGTAAGATTTCATTTGCCAACGATTTTTAGCTTCTTTTCATTTATGTTACCTTACTTTCAATGCTTATCAGTAAATTTATAGCATACTTACTCGGATACTGTCTTTGAGGCATACTTCAACTTCTGTTTATGCTTCATTCTTTTGATGTGGTACTTAGAACTCTGCCTCCATGTTGTTCGAATCCTCCAAAACTGCATATATTTTAGAGTATCGACACATGCAGACAGTATTCTTGGACGATTCAAGCAGCATAGCTCTGCCTAACTCTTATTGGGAAGCTTGCTTACAATAGTATATCGAGTAAATTTATGTTTGCAGCTATCCCATTACGGGCTTCATTAGATTTAGCACCAAGCACAGAATGTGCACGGTTTGATAGCCATATATCACACTTATATTTGAACTCTCGTTTATGGTCCAGTGTTATACCCAGTACCATTTTTGCTAACATTTTCCTTTACTCGTGCAGAAGCGATCAAAGTTGGGAGCTCCAGCACCTACAATCCCCATGGAATTTCGTGCTGAGAAAGCTCTTGAAGCTATACATGTGTGTTGCTATGGAAGGGATCTGATTGATGAAGAAGATGAAAAACTGCTAAGTACCATGCTTAATGCTGTCTTTCCTACAGTCGGGCGGCAAAAGGTAGAAATCATTGTCAAAGAGAAGGCAAAGAGAATGGCAGATGGAACTG</genome_strand>
        <mrna_strand>GGATGAGACCACAAATCCAATTTCTAGTTTTGCTAATAAGGTCATCGGTTCACTGCCTGTTTTTGGTCTCATAGCCAGAATTGTCAATGAGGAAGGTGGTGTTGGAGGCGATTTTATTGATTTTGCGGAGTTCAGGAGGCGAGTCGGTAACAAGTGTTCCATTAATGATTCAAGAGCTTTTTATGAATTTCGAGATCGACGTGGCAAG.............................................................................ACAGGGGATCCTCTGTATGTGCTACTGTGTTGTTGGTTAGCTGCAGTAGGAGCTGGTTTACTCAAATCTGAGGAAATTTTGGAAGGGGTAGCAAGGCTTAGTTTAGCAAATGATATTGAATTTGAAGAACAAAACTTCATCGCAATGATGAATGAAGCAAGGGAG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAGCGATCAAAGTTGGGAGCTCCAGCACCTACAATCCCCATGGAATTTCGTGCTGAGAAAGCTCTTGAAGCTATACATGTGTGTTGCTATGGAAGGGATCTGATTGATGAAGAAGATGAAAAACTGCTAAGTACCATGCTTAATGCTGTCTTTCCTACAGTCGGGCGGCAAAAGGTAGAAATCATTGTCAAAGAGAAGGCAAAGAGAATGGCAGATGGAACTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0236E02-u8qcS/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E345335" ref_strand="+" ref_description="SGN-E345335 [cTOF-13-C13]">
      <seq>tctcctctctccactctccttcttcttcctcctccatctactgtaactcaatctctccctctcttcgttactttcgacgtttctatacatttccatccagaagaaataattccaactccaatggcggtgcggtcttgctcgtcaaggcttatatggatgagaccacaaatccaatttctagttttgctaataaggtcatcggttcactgcctgtttttggtctcatagccagaattgtcaatgaggaaggtggtgttggaggcgattttattgattttgcggagttcaggaggcgagtcggtaacaagtgttccattaatgattcaagagctttttatgaatttcgagatcgacgtggcaagacaggggatcctctgtatgtgctactgtgttgttggttagctgcagtaggagctggtttactcaaatctgaggaaattttggaaggggtagcaaggcttagtttagcaaatgatattgaatttgaagaacaaaacttcatcgcaatgatgaatgaagcaagggagaagcgatcaaagttgggagctccagcacctacaatccccatggaatttcgtgctgagaaagctcttgaagctatacatgtgtgttgctatggaagggatctgattgatgaagaagatgaaaaactgctaagtaccatgcttaatgctgtctttcctacagtcgggcggcaaaaggtagaaatcattgtca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0236E02-u8qcS/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0236E02.1" temp_strand="-" temp_description="C02HBa0236E02.1  AC215430.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0236E02 sequenced_by:kribb upload_account_name:korea">
        <position start="73764" stop="70554"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="73464" g_stop="73423" g_length="42"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="42" r_length="42" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="73422" i_stop="72079" i_length="1344">
            <donor d_prob="0.962" d_score="1.00"/>
            <acceptor a_prob="0.000" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="72078" g_stop="71759" g_length="320"/>
          <reference_exon_boundary r_type="cDNA" r_start="43" r_stop="362" r_length="320" r_score="0.991"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="71758" i_stop="71682" i_length="77">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.925" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="71681" g_stop="71517" g_length="165"/>
          <reference_exon_boundary r_type="cDNA" r_start="363" r_stop="527" r_length="165" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="71516" i_stop="71044" i_length="473">
            <donor d_prob="0.981" d_score="1.00"/>
            <acceptor a_prob="0.983" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="71043" g_stop="70854" g_length="190"/>
          <reference_exon_boundary r_type="cDNA" r_start="528" r_stop="717" r_length="190" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0236E02.1" gen_strand="-" ref_id="SGN-E345335" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>717</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0236E02.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E345335" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="73464" e_stop="73423"/>
          <exon e_start="72078" e_stop="71759"/>
          <exon e_start="71681" e_stop="71517"/>
          <exon e_start="71043" e_stop="70854"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCTCCTCTCTCCACTCTCCTTCTTCTTCCTCCTCCATCTACTGTAACTCAATGGATTTGCCCCTATATTTCCAGACATCTGTTATCACTTAACCCATTACAAGCCCGCTGCCGCAGATATTCCCGTGGCGAGCGATAACCCAGCGCACTATGCGGATGCCATTCGTTATAATGCTCGAACGCCTCTGCAAGGTTCTTTGCTGCCGTTAACCCGTCTGGTTTGGGCATGATACTGATGTAGTCACGCTTTATCGTTTTCACGAAGCTCTCTGCTATTCCGTTACTCTCCGGACTCCGCACCGCCGTGTTCTTCGGTTCAAGTCCCAACATCCGGGCGAACTGGCGTGTTTCATTAGCCCGGTAGCATGAACCATTATCCGTCAGCCACTCCACTGGAGACGACGGAAGATCGTTGCCGAAGCGGCGTTCCACCGCTCCCAGCATGACGTCCTGTACTGTTTCACTGTTGAAGCCGCCGGTAGTGACCGCCCAGTGCAGTGCCTCACGATCACAGCAGTCCAGCGCGAACGTGGACACGCAGTCTCTCTCCGTTATCACAGCAGAACTCGAACCCGTCAGAGCACCATCGCTGATTGCTTTCTTTCACGGCCACTCTGCCCTGTATGTGCCCGGTTTCGATGGCGGTACAGCAGGTTTTCGCTCAAGCAACAGCGCATTCTGGCGCATGATCCGGTAAACACGTTTGGCATTGATCGCAGGCATACCATCAAGTTCTGCCTGTCTGCGAAGCAGCGCCCATACCCGACGATAACCATACGTTGGCAGCTCTCCGATAACATGGTGTATACGGAGAAGCACATCCGTATCATCAGTGTGACGACTGCGGCGGCCATCCATCCCAGTCCATCGGTTCGTCTGAGAATGACGTGCAACTGCGCACGCGACACCCGGAGGACAACGGCTGACTAAGCTTACTCCCCCATTCCCCGGGCAATAAGGGCGCGTGCGCTATCCACTTTTTTGCCCGTCCATATTCAACGGCTTCTTTGAGGAGTTCATTTTCCATCGTTTTCTTGCCGAGCAGGCGCTGGAGTTCTTTAATCTGCTTCATGGCGGCAGCAAGTTCAGAGGCAGGAACAACCTGTTCTCCGGCGGCGACAGCAGTAAGACTTCCTTCCTGGTATTGCTTACGCCAGAGAAATAACTGGCTGGCTGCTACACCATGTTGCCGGGCAACGAGGGAGACCGTCATCCCCGGTTCAAAGCTCTGCTGAACAATTGCGATCTTTTCCTGTGTGGTACGCCGTCTGCGTTTCTCCGGCCCTAAGACATCAATCATCTGTTCTCCAATGACTAGTCTAAAAACTAGTATTAAGACTATCACTTATTTAAGTGATATTGGTTGTCTGGAGATTCAGGGGGCCAGTCTACTCAATCTCTCCCTCTCTTCGTTACTTTCGACGTTTCTATACATTTCCATCCAGAAGAAATAATTCCAACTCCAATGGCGGTGCGGTCTTGCTCGTCAAGGCTTATATGGATGAGACCACAAATCCAATTTCTAGTTTTGCTAATAAGGTCATCGGTTCACTGCCTGTTTTTGGTCTCATAGCCAGAATTGTCAATGAGGAAGGTGGTGTTGGAGGCGATTTTATTGATTTTGCGGAGTTCAGGAGGCGAGTCGGTAACAAGTGTTCCATTAATGATTCAAGAGCTTTTTATGAATTTCGAGATCGACGTGGCAAGGTAATTTTTACTTGCAATCAAGTGACTTGGTTTTATCTATAGATTATTGACCTTGATTTTCCTTGCCTTATTGATAGACAGGGGATCCTCTGTATGTGCTACTGTGTTGTTGGTTAGCTGCAGTAGGAGCTGGTTTACTCAAATCTGAGGAAATTTTGGAAGGGGTAGCAAGGCTTAGTTTAGCAAATGATATTGAATTTGAAGAACAAAACTTCATCGCAATGATGAATGAAGCAAGGGAGGTTCGTAAGATTTCATTTGCCAACGATTTTTAGCTTCTTTTCATTTATGTTACCTTACTTTCAATGCTTATCAGTAAATTTATAGCATACTTACTCGGATACTGTCTTTGAGGCATACTTCAACTTCTGTTTATGCTTCATTCTTTTGATGTGGTACTTAGAACTCTGCCTCCATGTTGTTCGAATCCTCCAAAACTGCATATATTTTAGAGTATCGACACATGCAGACAGTATTCTTGGACGATTCAAGCAGCATAGCTCTGCCTAACTCTTATTGGGAAGCTTGCTTACAATAGTATATCGAGTAAATTTATGTTTGCAGCTATCCCATTACGGGCTTCATTAGATTTAGCACCAAGCACAGAATGTGCACGGTTTGATAGCCATATATCACACTTATATTTGAACTCTCGTTTATGGTCCAGTGTTATACCCAGTACCATTTTTGCTAACATTTTCCTTTACTCGTGCAGAAGCGATCAAAGTTGGGAGCTCCAGCACCTACAATCCCCATGGAATTTCGTGCTGAGAAAGCTCTTGAAGCTATACATGTGTGTTGCTATGGAAGGGATCTGATTGATGAAGAAGATGAAAAACTGCTAAGTACCATGCTTAATGCTGTCTTTCCTACAGTCGGGCGGCAAAAGGTAGAAATCATTGTCA</genome_strand>
        <mrna_strand>TCTCCTCTCTCCACTCTCCTTCTTCTTCCTCCTCCATCTACT................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTAACTCAATCTCTCCCTCTCTTCGTTACTTTCGACGTTTCTATACATTTCCATCCAGAAGAAATAATTCCAACTCCAATGGCGGTGCGGTCTTGCTCGTCAAGGCTTATATGGATGAGACCACAAATCCAATTTCTAGTTTTGCTAATAAGGTCATCGGTTCACTGCCTGTTTTTGGTCTCATAGCCAGAATTGTCAATGAGGAAGGTGGTGTTGGAGGCGATTTTATTGATTTTGCGGAGTTCAGGAGGCGAGTCGGTAACAAGTGTTCCATTAATGATTCAAGAGCTTTTTATGAATTTCGAGATCGACGTGGCAAG.............................................................................ACAGGGGATCCTCTGTATGTGCTACTGTGTTGTTGGTTAGCTGCAGTAGGAGCTGGTTTACTCAAATCTGAGGAAATTTTGGAAGGGGTAGCAAGGCTTAGTTTAGCAAATGATATTGAATTTGAAGAACAAAACTTCATCGCAATGATGAATGAAGCAAGGGAG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAGCGATCAAAGTTGGGAGCTCCAGCACCTACAATCCCCATGGAATTTCGTGCTGAGAAAGCTCTTGAAGCTATACATGTGTGTTGCTATGGAAGGGATCTGATTGATGAAGAAGATGAAAAACTGCTAAGTACCATGCTTAATGCTGTCTTTCCTACAGTCGGGCGGCAAAAGGTAGAAATCATTGTCA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0236E02-u8qcS/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E551165" ref_strand="+" ref_description="SGN-E551165 [TUS-55-J18]">
      <seq>ctactgtaactcaatctctccctctcttcgttactttcgacgtttctatacatttccatccagaagaaataattccaactccaatggcggtgcggtcttgctcgtcaaggcttatatggatgagaccacaaatccaatttctagttttgctaataaggtcatcggttcactgcctgtttttggtctcatagccagaattgtcaatgaggaaggtggtgttggaggcgattttattgattttgcggagttcaggaggcgagtcggtaacaagtgttccattaatgattcaagagctttttatgaatttcgagatcgacgtggcaagacaggggatcctctgtatgtgctactgtgttgttggttagctgcagtaggagctggtttactcaaatctgaggaaattttggaaggggtagcaaggcttagtttagcaaatgatattgaatttgaagaacaaaacttcatcgcaatgatgaatgaagcaagggagaagcgatcaaagttgggagctccagcacctacnatccccatggaatttcgtgctgagaaagctcttgaagctatacatgtgtgttgctatggaagggatctgattgatgaagaagatgaaaaactgctaagtaccatgcttaatgctgtctttcctacagtcgggcggcaaaaggtagaaatcattgt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0236E02-u8qcS/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0236E02.1" temp_strand="-" temp_description="C02HBa0236E02.1  AC215430.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0236E02 sequenced_by:kribb upload_account_name:korea">
        <position start="72382" stop="70556"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="72082" g_stop="71759" g_length="324"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="325" r_length="325" r_score="0.985"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="71758" i_stop="71682" i_length="77">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.925" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="71681" g_stop="71517" g_length="165"/>
          <reference_exon_boundary r_type="cDNA" r_start="326" r_stop="490" r_length="165" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="71516" i_stop="71044" i_length="473">
            <donor d_prob="0.981" d_score="1.00"/>
            <acceptor a_prob="0.983" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="71043" g_stop="70856" g_length="188"/>
          <reference_exon_boundary r_type="cDNA" r_start="491" r_stop="678" r_length="188" r_score="0.995"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0236E02.1" gen_strand="-" ref_id="SGN-E551165" ref_strand="+">
        <total_alignment_score>0.991</total_alignment_score>
        <cumulative_length_of_scored_exons>677</cumulative_length_of_scored_exons>
        <coverage percentage="0.999" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0236E02.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E551165" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="72082" e_stop="71759"/>
          <exon e_start="71681" e_stop="71517"/>
          <exon e_start="71043" e_stop="70856"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCAGTCT-ACTCAATCTCTCCCTCTCTTCGTTACTTTCGACGTTTCTATACATTTCCATCCAGAAGAAATAATTCCAACTCCAATGGCGGTGCGGTCTTGCTCGTCAAGGCTTATATGGATGAGACCACAAATCCAATTTCTAGTTTTGCTAATAAGGTCATCGGTTCACTGCCTGTTTTTGGTCTCATAGCCAGAATTGTCAATGAGGAAGGTGGTGTTGGAGGCGATTTTATTGATTTTGCGGAGTTCAGGAGGCGAGTCGGTAACAAGTGTTCCATTAATGATTCAAGAGCTTTTTATGAATTTCGAGATCGACGTGGCAAGGTAATTTTTACTTGCAATCAAGTGACTTGGTTTTATCTATAGATTATTGACCTTGATTTTCCTTGCCTTATTGATAGACAGGGGATCCTCTGTATGTGCTACTGTGTTGTTGGTTAGCTGCAGTAGGAGCTGGTTTACTCAAATCTGAGGAAATTTTGGAAGGGGTAGCAAGGCTTAGTTTAGCAAATGATATTGAATTTGAAGAACAAAACTTCATCGCAATGATGAATGAAGCAAGGGAGGTTCGTAAGATTTCATTTGCCAACGATTTTTAGCTTCTTTTCATTTATGTTACCTTACTTTCAATGCTTATCAGTAAATTTATAGCATACTTACTCGGATACTGTCTTTGAGGCATACTTCAACTTCTGTTTATGCTTCATTCTTTTGATGTGGTACTTAGAACTCTGCCTCCATGTTGTTCGAATCCTCCAAAACTGCATATATTTTAGAGTATCGACACATGCAGACAGTATTCTTGGACGATTCAAGCAGCATAGCTCTGCCTAACTCTTATTGGGAAGCTTGCTTACAATAGTATATCGAGTAAATTTATGTTTGCAGCTATCCCATTACGGGCTTCATTAGATTTAGCACCAAGCACAGAATGTGCACGGTTTGATAGCCATATATCACACTTATATTTGAACTCTCGTTTATGGTCCAGTGTTATACCCAGTACCATTTTTGCTAACATTTTCCTTTACTCGTGCAGAAGCGATCAAAGTTGGGAGCTCCAGCACCTACAATCCCCATGGAATTTCGTGCTGAGAAAGCTCTTGAAGCTATACATGTGTGTTGCTATGGAAGGGATCTGATTGATGAAGAAGATGAAAAACTGCTAAGTACCATGCTTAATGCTGTCTTTCCTACAGTCGGGCGGCAAAAGGTAGAAATCATTGT</genome_strand>
        <mrna_strand>CTACTGTAACTCAATCTCTCCCTCTCTTCGTTACTTTCGACGTTTCTATACATTTCCATCCAGAAGAAATAATTCCAACTCCAATGGCGGTGCGGTCTTGCTCGTCAAGGCTTATATGGATGAGACCACAAATCCAATTTCTAGTTTTGCTAATAAGGTCATCGGTTCACTGCCTGTTTTTGGTCTCATAGCCAGAATTGTCAATGAGGAAGGTGGTGTTGGAGGCGATTTTATTGATTTTGCGGAGTTCAGGAGGCGAGTCGGTAACAAGTGTTCCATTAATGATTCAAGAGCTTTTTATGAATTTCGAGATCGACGTGGCAAG.............................................................................ACAGGGGATCCTCTGTATGTGCTACTGTGTTGTTGGTTAGCTGCAGTAGGAGCTGGTTTACTCAAATCTGAGGAAATTTTGGAAGGGGTAGCAAGGCTTAGTTTAGCAAATGATATTGAATTTGAAGAACAAAACTTCATCGCAATGATGAATGAAGCAAGGGAG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAGCGATCAAAGTTGGGAGCTCCAGCACCTACNATCCCCATGGAATTTCGTGCTGAGAAAGCTCTTGAAGCTATACATGTGTGTTGCTATGGAAGGGATCTGATTGATGAAGAAGATGAAAAACTGCTAAGTACCATGCTTAATGCTGTCTTTCCTACAGTCGGGCGGCAAAAGGTAGAAATCATTGT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0236E02-u8qcS/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E326835" ref_strand="+" ref_description="SGN-E326835 [cTOC-25-I21]">
      <seq>cactatggtggttgtctcctctctccactctccttcttcttcctcctccatctactgtaactcaatctctccctctcttcgttactttcgacgtttctatacatttccatccagaagaaataattccaactccaatggcggtgcggtcttgctcgtcaaggcttatatggatgagaccacaaatccaatttctagttttgctaataaggtcatcggttcactgcctgtttttggtctcatagccagaattgtcaatgaggaaggtggtgttggaggcgattttattgattttgcggagttcaggaggcgagtcggtaacaagtgttccattaatgattcaagagctttttatgaatttcgagatcgacgtggcaagacaggggatcctctgtatgtgctactgtgttgttggttagctgcagtaggagctggtttactcaaatctgaggaaattttggaaggggtagcaaggcttagtttagcaaatgatattgaatttgaagaacaaaacttcatcgcaatgatgaatgaagcaagggagaagcgatcaaagttgggagctccagcacctacaatccccatggaatttcgtgctgagaaagctcttgaagctatacatgtgtgttgctatggaagggatctgattgatgaagaagatgaaaaactgctaagtacatgcttaatgctgtctttcctacagtcgggcggcaaaaggtagaaatcattg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0236E02-u8qcS/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0236E02.1" temp_strand="-" temp_description="C02HBa0236E02.1  AC215430.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0236E02 sequenced_by:kribb upload_account_name:korea">
        <position start="73778" stop="70557"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="73478" g_stop="73423" g_length="56"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="56" r_length="56" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="73422" i_stop="72079" i_length="1344">
            <donor d_prob="0.962" d_score="1.00"/>
            <acceptor a_prob="0.000" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="72078" g_stop="71759" g_length="320"/>
          <reference_exon_boundary r_type="cDNA" r_start="57" r_stop="376" r_length="320" r_score="0.991"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="71758" i_stop="71682" i_length="77">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.925" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="71681" g_stop="71517" g_length="165"/>
          <reference_exon_boundary r_type="cDNA" r_start="377" r_stop="541" r_length="165" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="71516" i_stop="71044" i_length="473">
            <donor d_prob="0.981" d_score="1.00"/>
            <acceptor a_prob="0.983" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="71043" g_stop="70857" g_length="187"/>
          <reference_exon_boundary r_type="cDNA" r_start="542" r_stop="727" r_length="186" r_score="0.995"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0236E02.1" gen_strand="-" ref_id="SGN-E326835" ref_strand="+">
        <total_alignment_score>0.995</total_alignment_score>
        <cumulative_length_of_scored_exons>728</cumulative_length_of_scored_exons>
        <coverage percentage="1.001" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0236E02.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E326835" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="73478" e_stop="73423"/>
          <exon e_start="72078" e_stop="71759"/>
          <exon e_start="71681" e_stop="71517"/>
          <exon e_start="71043" e_stop="70857"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CACTATGGTGGTTGTCTCCTCTCTCCACTCTCCTTCTTCTTCCTCCTCCATCTACTGTAACTCAATGGATTTGCCCCTATATTTCCAGACATCTGTTATCACTTAACCCATTACAAGCCCGCTGCCGCAGATATTCCCGTGGCGAGCGATAACCCAGCGCACTATGCGGATGCCATTCGTTATAATGCTCGAACGCCTCTGCAAGGTTCTTTGCTGCCGTTAACCCGTCTGGTTTGGGCATGATACTGATGTAGTCACGCTTTATCGTTTTCACGAAGCTCTCTGCTATTCCGTTACTCTCCGGACTCCGCACCGCCGTGTTCTTCGGTTCAAGTCCCAACATCCGGGCGAACTGGCGTGTTTCATTAGCCCGGTAGCATGAACCATTATCCGTCAGCCACTCCACTGGAGACGACGGAAGATCGTTGCCGAAGCGGCGTTCCACCGCTCCCAGCATGACGTCCTGTACTGTTTCACTGTTGAAGCCGCCGGTAGTGACCGCCCAGTGCAGTGCCTCACGATCACAGCAGTCCAGCGCGAACGTGGACACGCAGTCTCTCTCCGTTATCACAGCAGAACTCGAACCCGTCAGAGCACCATCGCTGATTGCTTTCTTTCACGGCCACTCTGCCCTGTATGTGCCCGGTTTCGATGGCGGTACAGCAGGTTTTCGCTCAAGCAACAGCGCATTCTGGCGCATGATCCGGTAAACACGTTTGGCATTGATCGCAGGCATACCATCAAGTTCTGCCTGTCTGCGAAGCAGCGCCCATACCCGACGATAACCATACGTTGGCAGCTCTCCGATAACATGGTGTATACGGAGAAGCACATCCGTATCATCAGTGTGACGACTGCGGCGGCCATCCATCCCAGTCCATCGGTTCGTCTGAGAATGACGTGCAACTGCGCACGCGACACCCGGAGGACAACGGCTGACTAAGCTTACTCCCCCATTCCCCGGGCAATAAGGGCGCGTGCGCTATCCACTTTTTTGCCCGTCCATATTCAACGGCTTCTTTGAGGAGTTCATTTTCCATCGTTTTCTTGCCGAGCAGGCGCTGGAGTTCTTTAATCTGCTTCATGGCGGCAGCAAGTTCAGAGGCAGGAACAACCTGTTCTCCGGCGGCGACAGCAGTAAGACTTCCTTCCTGGTATTGCTTACGCCAGAGAAATAACTGGCTGGCTGCTACACCATGTTGCCGGGCAACGAGGGAGACCGTCATCCCCGGTTCAAAGCTCTGCTGAACAATTGCGATCTTTTCCTGTGTGGTACGCCGTCTGCGTTTCTCCGGCCCTAAGACATCAATCATCTGTTCTCCAATGACTAGTCTAAAAACTAGTATTAAGACTATCACTTATTTAAGTGATATTGGTTGTCTGGAGATTCAGGGGGCCAGTCTACTCAATCTCTCCCTCTCTTCGTTACTTTCGACGTTTCTATACATTTCCATCCAGAAGAAATAATTCCAACTCCAATGGCGGTGCGGTCTTGCTCGTCAAGGCTTATATGGATGAGACCACAAATCCAATTTCTAGTTTTGCTAATAAGGTCATCGGTTCACTGCCTGTTTTTGGTCTCATAGCCAGAATTGTCAATGAGGAAGGTGGTGTTGGAGGCGATTTTATTGATTTTGCGGAGTTCAGGAGGCGAGTCGGTAACAAGTGTTCCATTAATGATTCAAGAGCTTTTTATGAATTTCGAGATCGACGTGGCAAGGTAATTTTTACTTGCAATCAAGTGACTTGGTTTTATCTATAGATTATTGACCTTGATTTTCCTTGCCTTATTGATAGACAGGGGATCCTCTGTATGTGCTACTGTGTTGTTGGTTAGCTGCAGTAGGAGCTGGTTTACTCAAATCTGAGGAAATTTTGGAAGGGGTAGCAAGGCTTAGTTTAGCAAATGATATTGAATTTGAAGAACAAAACTTCATCGCAATGATGAATGAAGCAAGGGAGGTTCGTAAGATTTCATTTGCCAACGATTTTTAGCTTCTTTTCATTTATGTTACCTTACTTTCAATGCTTATCAGTAAATTTATAGCATACTTACTCGGATACTGTCTTTGAGGCATACTTCAACTTCTGTTTATGCTTCATTCTTTTGATGTGGTACTTAGAACTCTGCCTCCATGTTGTTCGAATCCTCCAAAACTGCATATATTTTAGAGTATCGACACATGCAGACAGTATTCTTGGACGATTCAAGCAGCATAGCTCTGCCTAACTCTTATTGGGAAGCTTGCTTACAATAGTATATCGAGTAAATTTATGTTTGCAGCTATCCCATTACGGGCTTCATTAGATTTAGCACCAAGCACAGAATGTGCACGGTTTGATAGCCATATATCACACTTATATTTGAACTCTCGTTTATGGTCCAGTGTTATACCCAGTACCATTTTTGCTAACATTTTCCTTTACTCGTGCAGAAGCGATCAAAGTTGGGAGCTCCAGCACCTACAATCCCCATGGAATTTCGTGCTGAGAAAGCTCTTGAAGCTATACATGTGTGTTGCTATGGAAGGGATCTGATTGATGAAGAAGATGAAAAACTGCTAAGTACCATGCTTAATGCTGTCTTTCCTACAGTCGGGCGGCAAAAGGTAGAAATCATTG</genome_strand>
        <mrna_strand>CACTATGGTGGTTGTCTCCTCTCTCCACTCTCCTTCTTCTTCCTCCTCCATCTACT................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTAACTCAATCTCTCCCTCTCTTCGTTACTTTCGACGTTTCTATACATTTCCATCCAGAAGAAATAATTCCAACTCCAATGGCGGTGCGGTCTTGCTCGTCAAGGCTTATATGGATGAGACCACAAATCCAATTTCTAGTTTTGCTAATAAGGTCATCGGTTCACTGCCTGTTTTTGGTCTCATAGCCAGAATTGTCAATGAGGAAGGTGGTGTTGGAGGCGATTTTATTGATTTTGCGGAGTTCAGGAGGCGAGTCGGTAACAAGTGTTCCATTAATGATTCAAGAGCTTTTTATGAATTTCGAGATCGACGTGGCAAG.............................................................................ACAGGGGATCCTCTGTATGTGCTACTGTGTTGTTGGTTAGCTGCAGTAGGAGCTGGTTTACTCAAATCTGAGGAAATTTTGGAAGGGGTAGCAAGGCTTAGTTTAGCAAATGATATTGAATTTGAAGAACAAAACTTCATCGCAATGATGAATGAAGCAAGGGAG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAGCGATCAAAGTTGGGAGCTCCAGCACCTACAATCCCCATGGAATTTCGTGCTGAGAAAGCTCTTGAAGCTATACATGTGTGTTGCTATGGAAGGGATCTGATTGATGAAGAAGATGAAAAACTGCTAAGTA-CATGCTTAATGCTGTCTTTCCTACAGTCGGGCGGCAAAAGGTAGAAATCATTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0236E02-u8qcS/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E458982" ref_strand="+" ref_description="SGN-E458982 [cPRO-33-C1]">
      <seq>cttcttcttcctcctccatctactgcaactcaatctctccctctcttcgttactttcgacgtttctatacatttccatccacaaggaataataataaagcagcttccaactccaatggcggtgccgtcttactcgtcaaggcttatatggatgagaccacaaatccaatttccagtttcgctaataaggtcatcggttcactccctgtttttggtctcatagccagaattgtgaatgaggaaggtggtgttggtggtgattttattgattttgctgagttcaggaggcgagtcggtaacaagtgctccattaatgattcaagagctttttatgaatttcgagatcgacgtggcaagacaggggatcctctgtatgtgctactgtgctgttggttagctgctgtaggagctggtttactcaaatctgaggaaattttggaaggggtagcaaggcttagtttagcaaatgatattgaatttgaagagcaaaacttcattgcaatgatgaatgaagcaagagagaagcgatcaaagttgggagctcctgcacctacaatccccatggaatttcgtgctgagaaagctctggaagctatacatttgtgttgctatggaagggatctgatagaagaagaagatgaaaaactgctaagtaccatgcttaatgctgtctttcctacagttgggcagcaaaaggtagaaattattg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0236E02-u8qcS/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0236E02.1" temp_strand="-" temp_description="C02HBa0236E02.1  AC215430.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0236E02 sequenced_by:kribb upload_account_name:korea">
        <position start="73746" stop="70557"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="73446" g_stop="73423" g_length="24"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="24" r_length="24" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="73422" i_stop="72079" i_length="1344">
            <donor d_prob="0.962" d_score="0.00"/>
            <acceptor a_prob="0.000" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="72078" g_stop="71759" g_length="320"/>
          <reference_exon_boundary r_type="cDNA" r_start="25" r_stop="356" r_length="332" r_score="0.884"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="71758" i_stop="71682" i_length="77">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.925" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="71681" g_stop="71517" g_length="165"/>
          <reference_exon_boundary r_type="cDNA" r_start="357" r_stop="521" r_length="165" r_score="0.970"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="71516" i_stop="71044" i_length="473">
            <donor d_prob="0.981" d_score="0.94"/>
            <acceptor a_prob="0.983" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="71043" g_stop="70857" g_length="187"/>
          <reference_exon_boundary r_type="cDNA" r_start="522" r_stop="708" r_length="187" r_score="0.957"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0236E02.1" gen_strand="-" ref_id="SGN-E458982" ref_strand="+">
        <total_alignment_score>0.926</total_alignment_score>
        <cumulative_length_of_scored_exons>696</cumulative_length_of_scored_exons>
        <coverage percentage="0.983" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0236E02.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E458982" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="73446" e_stop="73423"/>
          <exon e_start="72078" e_stop="71759"/>
          <exon e_start="71681" e_stop="71517"/>
          <exon e_start="71043" e_stop="70857"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTTCTTCTTCCTCCTCCATCTACTGTAACTCAATGGATTTGCCCCTATATTTCCAGACATCTGTTATCACTTAACCCATTACAAGCCCGCTGCCGCAGATATTCCCGTGGCGAGCGATAACCCAGCGCACTATGCGGATGCCATTCGTTATAATGCTCGAACGCCTCTGCAAGGTTCTTTGCTGCCGTTAACCCGTCTGGTTTGGGCATGATACTGATGTAGTCACGCTTTATCGTTTTCACGAAGCTCTCTGCTATTCCGTTACTCTCCGGACTCCGCACCGCCGTGTTCTTCGGTTCAAGTCCCAACATCCGGGCGAACTGGCGTGTTTCATTAGCCCGGTAGCATGAACCATTATCCGTCAGCCACTCCACTGGAGACGACGGAAGATCGTTGCCGAAGCGGCGTTCCACCGCTCCCAGCATGACGTCCTGTACTGTTTCACTGTTGAAGCCGCCGGTAGTGACCGCCCAGTGCAGTGCCTCACGATCACAGCAGTCCAGCGCGAACGTGGACACGCAGTCTCTCTCCGTTATCACAGCAGAACTCGAACCCGTCAGAGCACCATCGCTGATTGCTTTCTTTCACGGCCACTCTGCCCTGTATGTGCCCGGTTTCGATGGCGGTACAGCAGGTTTTCGCTCAAGCAACAGCGCATTCTGGCGCATGATCCGGTAAACACGTTTGGCATTGATCGCAGGCATACCATCAAGTTCTGCCTGTCTGCGAAGCAGCGCCCATACCCGACGATAACCATACGTTGGCAGCTCTCCGATAACATGGTGTATACGGAGAAGCACATCCGTATCATCAGTGTGACGACTGCGGCGGCCATCCATCCCAGTCCATCGGTTCGTCTGAGAATGACGTGCAACTGCGCACGCGACACCCGGAGGACAACGGCTGACTAAGCTTACTCCCCCATTCCCCGGGCAATAAGGGCGCGTGCGCTATCCACTTTTTTGCCCGTCCATATTCAACGGCTTCTTTGAGGAGTTCATTTTCCATCGTTTTCTTGCCGAGCAGGCGCTGGAGTTCTTTAATCTGCTTCATGGCGGCAGCAAGTTCAGAGGCAGGAACAACCTGTTCTCCGGCGGCGACAGCAGTAAGACTTCCTTCCTGGTATTGCTTACGCCAGAGAAATAACTGGCTGGCTGCTACACCATGTTGCCGGGCAACGAGGGAGACCGTCATCCCCGGTTCAAAGCTCTGCTGAACAATTGCGATCTTTTCCTGTGTGGTACGCCGTCTGCGTTTCTCCGGCCCTAAGACATCAATCATCTGTTCTCCAATGACTAGTCTAAAAACTAGTATTAAGACTATCACTTATTTAAGTGATATTGGTTGTCTGGAGATTCAGGGGGCCAGTCTACTCAATCTCTCCCTCTCTTCGTTACTTTCGACGTTTCTATACATTTCCAT-C-C-A-GAA-GA-AAT--A--A--TTCCAACTCCAATGGCGGTGCGGTCTTGCTCGTCAAGGCTTATATGGATGAGACCACAAATCCAATTTCTAGTTTTGCTAATAAGGTCATCGGTTCACTGCCTGTTTTTGGTCTCATAGCCAGAATTGTCAATGAGGAAGGTGGTGTTGGAGGCGATTTTATTGATTTTGCGGAGTTCAGGAGGCGAGTCGGTAACAAGTGTTCCATTAATGATTCAAGAGCTTTTTATGAATTTCGAGATCGACGTGGCAAGGTAATTTTTACTTGCAATCAAGTGACTTGGTTTTATCTATAGATTATTGACCTTGATTTTCCTTGCCTTATTGATAGACAGGGGATCCTCTGTATGTGCTACTGTGTTGTTGGTTAGCTGCAGTAGGAGCTGGTTTACTCAAATCTGAGGAAATTTTGGAAGGGGTAGCAAGGCTTAGTTTAGCAAATGATATTGAATTTGAAGAACAAAACTTCATCGCAATGATGAATGAAGCAAGGGAGGTTCGTAAGATTTCATTTGCCAACGATTTTTAGCTTCTTTTCATTTATGTTACCTTACTTTCAATGCTTATCAGTAAATTTATAGCATACTTACTCGGATACTGTCTTTGAGGCATACTTCAACTTCTGTTTATGCTTCATTCTTTTGATGTGGTACTTAGAACTCTGCCTCCATGTTGTTCGAATCCTCCAAAACTGCATATATTTTAGAGTATCGACACATGCAGACAGTATTCTTGGACGATTCAAGCAGCATAGCTCTGCCTAACTCTTATTGGGAAGCTTGCTTACAATAGTATATCGAGTAAATTTATGTTTGCAGCTATCCCATTACGGGCTTCATTAGATTTAGCACCAAGCACAGAATGTGCACGGTTTGATAGCCATATATCACACTTATATTTGAACTCTCGTTTATGGTCCAGTGTTATACCCAGTACCATTTTTGCTAACATTTTCCTTTACTCGTGCAGAAGCGATCAAAGTTGGGAGCTCCAGCACCTACAATCCCCATGGAATTTCGTGCTGAGAAAGCTCTTGAAGCTATACATGTGTGTTGCTATGGAAGGGATCTGATTGATGAAGAAGATGAAAAACTGCTAAGTACCATGCTTAATGCTGTCTTTCCTACAGTCGGGCGGCAAAAGGTAGAAATCATTG</genome_strand>
        <mrna_strand>CTTCTTCTTCCTCCTCCATCTACT................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCAACTCAATCTCTCCCTCTCTTCGTTACTTTCGACGTTTCTATACATTTCCATCCACAAGGAATAATAATAAAGCAGCTTCCAACTCCAATGGCGGTGCCGTCTTACTCGTCAAGGCTTATATGGATGAGACCACAAATCCAATTTCCAGTTTCGCTAATAAGGTCATCGGTTCACTCCCTGTTTTTGGTCTCATAGCCAGAATTGTGAATGAGGAAGGTGGTGTTGGTGGTGATTTTATTGATTTTGCTGAGTTCAGGAGGCGAGTCGGTAACAAGTGCTCCATTAATGATTCAAGAGCTTTTTATGAATTTCGAGATCGACGTGGCAAG.............................................................................ACAGGGGATCCTCTGTATGTGCTACTGTGCTGTTGGTTAGCTGCTGTAGGAGCTGGTTTACTCAAATCTGAGGAAATTTTGGAAGGGGTAGCAAGGCTTAGTTTAGCAAATGATATTGAATTTGAAGAGCAAAACTTCATTGCAATGATGAATGAAGCAAGAGAG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAGCGATCAAAGTTGGGAGCTCCTGCACCTACAATCCCCATGGAATTTCGTGCTGAGAAAGCTCTGGAAGCTATACATTTGTGTTGCTATGGAAGGGATCTGATAGAAGAAGAAGATGAAAAACTGCTAAGTACCATGCTTAATGCTGTCTTTCCTACAGTTGGGCAGCAAAAGGTAGAAATTATTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0236E02-u8qcS/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E406974" ref_strand="+" ref_description="SGN-E406974 [PPI-5-J9]">
      <seq>aaacactatggtggttgtctcctctctccactctccttcttcttcctcctccatctactgcaactcaatctctccctctcttcgttattttcgacgtttctatacatttccatccacaaggaataataataaagcagcttccaactccaatggcggtgccgtcttgctcgtcaaggcttatatggatgagaccacaaatccaatttccagtttcgctaataaggtcatcggttcactccctgtttttggtctcatagccagaattgtcaatgaggaaggtggtgttggtggtgattttattgattttgctgagttcaggaggcgagtcggtaacaagtgttccattaatgattcaagagctttttatgaatttcgagatcgacgtggcaagacaggggatcctctgtatgtgctactgtgctgttggttagctgctgtaggagctggtttactcaaatctgaggaaattttggaaggggtagcaaggcttagtttagcaaatgatattgaatttgaagagcaaaacttcattgcaatgatgaatgaagcaagaaagaagcgatcaaagttgggagctcctgcacctacaatccccatggaatttcgtgctgagaaagctctggaagcatacatgtgtgttgctatggaagggatctgattgaagaagaagatgaaaaactgctaagtaccatgcttaatgccgtctttcctacagttgggcagca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0236E02-u8qcS/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0236E02.1" temp_strand="-" temp_description="C02HBa0236E02.1  AC215430.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0236E02 sequenced_by:kribb upload_account_name:korea">
        <position start="73780" stop="70574"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="73481" g_stop="73423" g_length="59"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="59" r_length="59" r_score="0.983"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="73422" i_stop="72079" i_length="1344">
            <donor d_prob="0.962" d_score="1.00"/>
            <acceptor a_prob="0.000" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="72078" g_stop="71759" g_length="320"/>
          <reference_exon_boundary r_type="cDNA" r_start="60" r_stop="391" r_length="332" r_score="0.891"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="71758" i_stop="71682" i_length="77">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.925" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="71681" g_stop="71517" g_length="165"/>
          <reference_exon_boundary r_type="cDNA" r_start="392" r_stop="556" r_length="165" r_score="0.964"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="71516" i_stop="71044" i_length="473">
            <donor d_prob="0.981" d_score="0.92"/>
            <acceptor a_prob="0.983" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="71043" g_stop="70874" g_length="170"/>
          <reference_exon_boundary r_type="cDNA" r_start="557" r_stop="725" r_length="169" r_score="0.959"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0236E02.1" gen_strand="-" ref_id="SGN-E406974" ref_strand="+">
        <total_alignment_score>0.931</total_alignment_score>
        <cumulative_length_of_scored_exons>714</cumulative_length_of_scored_exons>
        <coverage percentage="0.985" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0236E02.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E406974" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="73481" e_stop="73423"/>
          <exon e_start="72078" e_stop="71759"/>
          <exon e_start="71681" e_stop="71517"/>
          <exon e_start="71043" e_stop="70874"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TAACACTATGGTGGTTGTCTCCTCTCTCCACTCTCCTTCTTCTTCCTCCTCCATCTACTGTAACTCAATGGATTTGCCCCTATATTTCCAGACATCTGTTATCACTTAACCCATTACAAGCCCGCTGCCGCAGATATTCCCGTGGCGAGCGATAACCCAGCGCACTATGCGGATGCCATTCGTTATAATGCTCGAACGCCTCTGCAAGGTTCTTTGCTGCCGTTAACCCGTCTGGTTTGGGCATGATACTGATGTAGTCACGCTTTATCGTTTTCACGAAGCTCTCTGCTATTCCGTTACTCTCCGGACTCCGCACCGCCGTGTTCTTCGGTTCAAGTCCCAACATCCGGGCGAACTGGCGTGTTTCATTAGCCCGGTAGCATGAACCATTATCCGTCAGCCACTCCACTGGAGACGACGGAAGATCGTTGCCGAAGCGGCGTTCCACCGCTCCCAGCATGACGTCCTGTACTGTTTCACTGTTGAAGCCGCCGGTAGTGACCGCCCAGTGCAGTGCCTCACGATCACAGCAGTCCAGCGCGAACGTGGACACGCAGTCTCTCTCCGTTATCACAGCAGAACTCGAACCCGTCAGAGCACCATCGCTGATTGCTTTCTTTCACGGCCACTCTGCCCTGTATGTGCCCGGTTTCGATGGCGGTACAGCAGGTTTTCGCTCAAGCAACAGCGCATTCTGGCGCATGATCCGGTAAACACGTTTGGCATTGATCGCAGGCATACCATCAAGTTCTGCCTGTCTGCGAAGCAGCGCCCATACCCGACGATAACCATACGTTGGCAGCTCTCCGATAACATGGTGTATACGGAGAAGCACATCCGTATCATCAGTGTGACGACTGCGGCGGCCATCCATCCCAGTCCATCGGTTCGTCTGAGAATGACGTGCAACTGCGCACGCGACACCCGGAGGACAACGGCTGACTAAGCTTACTCCCCCATTCCCCGGGCAATAAGGGCGCGTGCGCTATCCACTTTTTTGCCCGTCCATATTCAACGGCTTCTTTGAGGAGTTCATTTTCCATCGTTTTCTTGCCGAGCAGGCGCTGGAGTTCTTTAATCTGCTTCATGGCGGCAGCAAGTTCAGAGGCAGGAACAACCTGTTCTCCGGCGGCGACAGCAGTAAGACTTCCTTCCTGGTATTGCTTACGCCAGAGAAATAACTGGCTGGCTGCTACACCATGTTGCCGGGCAACGAGGGAGACCGTCATCCCCGGTTCAAAGCTCTGCTGAACAATTGCGATCTTTTCCTGTGTGGTACGCCGTCTGCGTTTCTCCGGCCCTAAGACATCAATCATCTGTTCTCCAATGACTAGTCTAAAAACTAGTATTAAGACTATCACTTATTTAAGTGATATTGGTTGTCTGGAGATTCAGGGGGCCAGTCTACTCAATCTCTCCCTCTCTTCGTTACTTTCGACGTTTCTATACATTTCCAT-C-C-A-GAA-GA-AAT--A--A--TTCCAACTCCAATGGCGGTGCGGTCTTGCTCGTCAAGGCTTATATGGATGAGACCACAAATCCAATTTCTAGTTTTGCTAATAAGGTCATCGGTTCACTGCCTGTTTTTGGTCTCATAGCCAGAATTGTCAATGAGGAAGGTGGTGTTGGAGGCGATTTTATTGATTTTGCGGAGTTCAGGAGGCGAGTCGGTAACAAGTGTTCCATTAATGATTCAAGAGCTTTTTATGAATTTCGAGATCGACGTGGCAAGGTAATTTTTACTTGCAATCAAGTGACTTGGTTTTATCTATAGATTATTGACCTTGATTTTCCTTGCCTTATTGATAGACAGGGGATCCTCTGTATGTGCTACTGTGTTGTTGGTTAGCTGCAGTAGGAGCTGGTTTACTCAAATCTGAGGAAATTTTGGAAGGGGTAGCAAGGCTTAGTTTAGCAAATGATATTGAATTTGAAGAACAAAACTTCATCGCAATGATGAATGAAGCAAGGGAGGTTCGTAAGATTTCATTTGCCAACGATTTTTAGCTTCTTTTCATTTATGTTACCTTACTTTCAATGCTTATCAGTAAATTTATAGCATACTTACTCGGATACTGTCTTTGAGGCATACTTCAACTTCTGTTTATGCTTCATTCTTTTGATGTGGTACTTAGAACTCTGCCTCCATGTTGTTCGAATCCTCCAAAACTGCATATATTTTAGAGTATCGACACATGCAGACAGTATTCTTGGACGATTCAAGCAGCATAGCTCTGCCTAACTCTTATTGGGAAGCTTGCTTACAATAGTATATCGAGTAAATTTATGTTTGCAGCTATCCCATTACGGGCTTCATTAGATTTAGCACCAAGCACAGAATGTGCACGGTTTGATAGCCATATATCACACTTATATTTGAACTCTCGTTTATGGTCCAGTGTTATACCCAGTACCATTTTTGCTAACATTTTCCTTTACTCGTGCAGAAGCGATCAAAGTTGGGAGCTCCAGCACCTACAATCCCCATGGAATTTCGTGCTGAGAAAGCTCTTGAAGCTATACATGTGTGTTGCTATGGAAGGGATCTGATTGATGAAGAAGATGAAAAACTGCTAAGTACCATGCTTAATGCTGTCTTTCCTACAGTCGGGCGGCA</genome_strand>
        <mrna_strand>AAACACTATGGTGGTTGTCTCCTCTCTCCACTCTCCTTCTTCTTCCTCCTCCATCTACT................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCAACTCAATCTCTCCCTCTCTTCGTTATTTTCGACGTTTCTATACATTTCCATCCACAAGGAATAATAATAAAGCAGCTTCCAACTCCAATGGCGGTGCCGTCTTGCTCGTCAAGGCTTATATGGATGAGACCACAAATCCAATTTCCAGTTTCGCTAATAAGGTCATCGGTTCACTCCCTGTTTTTGGTCTCATAGCCAGAATTGTCAATGAGGAAGGTGGTGTTGGTGGTGATTTTATTGATTTTGCTGAGTTCAGGAGGCGAGTCGGTAACAAGTGTTCCATTAATGATTCAAGAGCTTTTTATGAATTTCGAGATCGACGTGGCAAG.............................................................................ACAGGGGATCCTCTGTATGTGCTACTGTGCTGTTGGTTAGCTGCTGTAGGAGCTGGTTTACTCAAATCTGAGGAAATTTTGGAAGGGGTAGCAAGGCTTAGTTTAGCAAATGATATTGAATTTGAAGAGCAAAACTTCATTGCAATGATGAATGAAGCAAGAAAG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAGCGATCAAAGTTGGGAGCTCCTGCACCTACAATCCCCATGGAATTTCGTGCTGAGAAAGCTCTGGAAGC-ATACATGTGTGTTGCTATGGAAGGGATCTGATTGAAGAAGAAGATGAAAAACTGCTAAGTACCATGCTTAATGCCGTCTTTCCTACAGTTGGGCAGCA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0236E02-u8qcS/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E688982" ref_strand="+" ref_description="SGN-E688982 [t3_tus_55_J18]">
      <seq>ctactgtaactcaatctctccctctcttcgttactttcgacgtttctatacatttccatccagaagaaataattccaactccaatggcggtgcggtcttgctcgtcaaggcttatatggatgagaccacaaatccaatttctagttttgctaataaggtcatcggttcactgcctgtttttggtctcatagccagaattgtcaatgaggaaggtggtgttggaggcgattttattgattttgcggagttcaggaggcgagtcggtaacaagtgttccattaatgattcaagagctttttatgaatttcgagatcgacgtggcaagacaggggatcctctgtatgtgctactgtgttgttggttagctgcagtaggagctggtttactcaaatctgaggaaattttggaaggggtagcaaggcttagtttagcaaatgatattgaatttgaagaacaaaacttcatcgcaatgatgaatgaagcaagggagaagcgatcaaagttgggagctccagcacctacnatccccatggaatttcgtgctgagaaagctcttgaagctatacatgtgtgttgctatggaagggatctgattgatgaagaagatgaaaaactgctaagtaccatgcttaatgctgtctttcctacagtcgggcggc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0236E02-u8qcS/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0236E02.1" temp_strand="-" temp_description="C02HBa0236E02.1  AC215430.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0236E02 sequenced_by:kribb upload_account_name:korea">
        <position start="72382" stop="70575"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="72082" g_stop="71759" g_length="324"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="325" r_length="325" r_score="0.985"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="71758" i_stop="71682" i_length="77">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.925" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="71681" g_stop="71517" g_length="165"/>
          <reference_exon_boundary r_type="cDNA" r_start="326" r_stop="490" r_length="165" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="71516" i_stop="71044" i_length="473">
            <donor d_prob="0.981" d_score="1.00"/>
            <acceptor a_prob="0.983" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="71043" g_stop="70875" g_length="169"/>
          <reference_exon_boundary r_type="cDNA" r_start="491" r_stop="659" r_length="169" r_score="0.994"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0236E02.1" gen_strand="-" ref_id="SGN-E688982" ref_strand="+">
        <total_alignment_score>0.991</total_alignment_score>
        <cumulative_length_of_scored_exons>658</cumulative_length_of_scored_exons>
        <coverage percentage="0.998" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0236E02.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E688982" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="72082" e_stop="71759"/>
          <exon e_start="71681" e_stop="71517"/>
          <exon e_start="71043" e_stop="70875"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCAGTCT-ACTCAATCTCTCCCTCTCTTCGTTACTTTCGACGTTTCTATACATTTCCATCCAGAAGAAATAATTCCAACTCCAATGGCGGTGCGGTCTTGCTCGTCAAGGCTTATATGGATGAGACCACAAATCCAATTTCTAGTTTTGCTAATAAGGTCATCGGTTCACTGCCTGTTTTTGGTCTCATAGCCAGAATTGTCAATGAGGAAGGTGGTGTTGGAGGCGATTTTATTGATTTTGCGGAGTTCAGGAGGCGAGTCGGTAACAAGTGTTCCATTAATGATTCAAGAGCTTTTTATGAATTTCGAGATCGACGTGGCAAGGTAATTTTTACTTGCAATCAAGTGACTTGGTTTTATCTATAGATTATTGACCTTGATTTTCCTTGCCTTATTGATAGACAGGGGATCCTCTGTATGTGCTACTGTGTTGTTGGTTAGCTGCAGTAGGAGCTGGTTTACTCAAATCTGAGGAAATTTTGGAAGGGGTAGCAAGGCTTAGTTTAGCAAATGATATTGAATTTGAAGAACAAAACTTCATCGCAATGATGAATGAAGCAAGGGAGGTTCGTAAGATTTCATTTGCCAACGATTTTTAGCTTCTTTTCATTTATGTTACCTTACTTTCAATGCTTATCAGTAAATTTATAGCATACTTACTCGGATACTGTCTTTGAGGCATACTTCAACTTCTGTTTATGCTTCATTCTTTTGATGTGGTACTTAGAACTCTGCCTCCATGTTGTTCGAATCCTCCAAAACTGCATATATTTTAGAGTATCGACACATGCAGACAGTATTCTTGGACGATTCAAGCAGCATAGCTCTGCCTAACTCTTATTGGGAAGCTTGCTTACAATAGTATATCGAGTAAATTTATGTTTGCAGCTATCCCATTACGGGCTTCATTAGATTTAGCACCAAGCACAGAATGTGCACGGTTTGATAGCCATATATCACACTTATATTTGAACTCTCGTTTATGGTCCAGTGTTATACCCAGTACCATTTTTGCTAACATTTTCCTTTACTCGTGCAGAAGCGATCAAAGTTGGGAGCTCCAGCACCTACAATCCCCATGGAATTTCGTGCTGAGAAAGCTCTTGAAGCTATACATGTGTGTTGCTATGGAAGGGATCTGATTGATGAAGAAGATGAAAAACTGCTAAGTACCATGCTTAATGCTGTCTTTCCTACAGTCGGGCGGC</genome_strand>
        <mrna_strand>CTACTGTAACTCAATCTCTCCCTCTCTTCGTTACTTTCGACGTTTCTATACATTTCCATCCAGAAGAAATAATTCCAACTCCAATGGCGGTGCGGTCTTGCTCGTCAAGGCTTATATGGATGAGACCACAAATCCAATTTCTAGTTTTGCTAATAAGGTCATCGGTTCACTGCCTGTTTTTGGTCTCATAGCCAGAATTGTCAATGAGGAAGGTGGTGTTGGAGGCGATTTTATTGATTTTGCGGAGTTCAGGAGGCGAGTCGGTAACAAGTGTTCCATTAATGATTCAAGAGCTTTTTATGAATTTCGAGATCGACGTGGCAAG.............................................................................ACAGGGGATCCTCTGTATGTGCTACTGTGTTGTTGGTTAGCTGCAGTAGGAGCTGGTTTACTCAAATCTGAGGAAATTTTGGAAGGGGTAGCAAGGCTTAGTTTAGCAAATGATATTGAATTTGAAGAACAAAACTTCATCGCAATGATGAATGAAGCAAGGGAG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAGCGATCAAAGTTGGGAGCTCCAGCACCTACNATCCCCATGGAATTTCGTGCTGAGAAAGCTCTTGAAGCTATACATGTGTGTTGCTATGGAAGGGATCTGATTGATGAAGAAGATGAAAAACTGCTAAGTACCATGCTTAATGCTGTCTTTCCTACAGTCGGGCGGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0236E02-u8qcS/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E408797" ref_strand="+" ref_description="SGN-E408797 [PPI-12-A16]">
      <seq>catgtaaacactatggtggttgtctcctctctccactctccttcttcttcctcctccatctactgcaactcaatctctccctctcttcgttattttcgacgtttctatacatttccatccacaaggaataataataaagcagcttccaactccaatggcggtgccgtcttgctcgtcaaggcttatatggatgagaccacaaatccaatttccagtttcgctaataaggtcatcggttcactccctgtttttggtctcatagccagaattgtcaatgaggaaggtggtngtggtggtgattttattgattttgctgagttcaggaggcgagtcggtaacaagtgttccattaatgattcaagagctttttatgaatttcgagatcgacgtggcaagacaggggatcctctgtatgtgctactgtgctgttggttagctgctgtaggagctggtttaactcaatctgaggaaaatttggaagggtagcaaggcttagtttagcaaatgatattgaatttgaagagcaaaacttcattgcaatgatgaaatgaagcagaaagaaacgatcaaagttgggagctcctgcaccctacatccccatggaatttcgtgctgagaaagctctggaagctatacatgtgtgttgctatggaagggatctgattgaagaagaagatgaaaaactgctaagtaccatgcttaatgccgtcttttctacagttgggcag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0236E02-u8qcS/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0236E02.1" temp_strand="-" temp_description="C02HBa0236E02.1  AC215430.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0236E02 sequenced_by:kribb upload_account_name:korea">
        <position start="73785" stop="70578"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="73485" g_stop="73423" g_length="63"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="64" r_length="64" r_score="0.968"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="73422" i_stop="72079" i_length="1344">
            <donor d_prob="0.962" d_score="1.00"/>
            <acceptor a_prob="0.000" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="72078" g_stop="71759" g_length="320"/>
          <reference_exon_boundary r_type="cDNA" r_start="65" r_stop="396" r_length="332" r_score="0.884"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="71758" i_stop="71682" i_length="77">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.925" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="71681" g_stop="71517" g_length="165"/>
          <reference_exon_boundary r_type="cDNA" r_start="397" r_stop="560" r_length="164" r_score="0.915"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="71516" i_stop="71044" i_length="473">
            <donor d_prob="0.981" d_score="0.86"/>
            <acceptor a_prob="0.983" a_score="0.90"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="71043" g_stop="70876" g_length="168"/>
          <reference_exon_boundary r_type="cDNA" r_start="561" r_stop="728" r_length="168" r_score="0.935"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0236E02.1" gen_strand="-" ref_id="SGN-E408797" ref_strand="+">
        <total_alignment_score>0.911</total_alignment_score>
        <cumulative_length_of_scored_exons>716</cumulative_length_of_scored_exons>
        <coverage percentage="0.984" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0236E02.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E408797" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="73485" e_stop="73423"/>
          <exon e_start="72078" e_stop="71759"/>
          <exon e_start="71681" e_stop="71517"/>
          <exon e_start="71043" e_stop="70876"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CATGT-AACACTATGGTGGTTGTCTCCTCTCTCCACTCTCCTTCTTCTTCCTCCTCCATCTACTGTAACTCAATGGATTTGCCCCTATATTTCCAGACATCTGTTATCACTTAACCCATTACAAGCCCGCTGCCGCAGATATTCCCGTGGCGAGCGATAACCCAGCGCACTATGCGGATGCCATTCGTTATAATGCTCGAACGCCTCTGCAAGGTTCTTTGCTGCCGTTAACCCGTCTGGTTTGGGCATGATACTGATGTAGTCACGCTTTATCGTTTTCACGAAGCTCTCTGCTATTCCGTTACTCTCCGGACTCCGCACCGCCGTGTTCTTCGGTTCAAGTCCCAACATCCGGGCGAACTGGCGTGTTTCATTAGCCCGGTAGCATGAACCATTATCCGTCAGCCACTCCACTGGAGACGACGGAAGATCGTTGCCGAAGCGGCGTTCCACCGCTCCCAGCATGACGTCCTGTACTGTTTCACTGTTGAAGCCGCCGGTAGTGACCGCCCAGTGCAGTGCCTCACGATCACAGCAGTCCAGCGCGAACGTGGACACGCAGTCTCTCTCCGTTATCACAGCAGAACTCGAACCCGTCAGAGCACCATCGCTGATTGCTTTCTTTCACGGCCACTCTGCCCTGTATGTGCCCGGTTTCGATGGCGGTACAGCAGGTTTTCGCTCAAGCAACAGCGCATTCTGGCGCATGATCCGGTAAACACGTTTGGCATTGATCGCAGGCATACCATCAAGTTCTGCCTGTCTGCGAAGCAGCGCCCATACCCGACGATAACCATACGTTGGCAGCTCTCCGATAACATGGTGTATACGGAGAAGCACATCCGTATCATCAGTGTGACGACTGCGGCGGCCATCCATCCCAGTCCATCGGTTCGTCTGAGAATGACGTGCAACTGCGCACGCGACACCCGGAGGACAACGGCTGACTAAGCTTACTCCCCCATTCCCCGGGCAATAAGGGCGCGTGCGCTATCCACTTTTTTGCCCGTCCATATTCAACGGCTTCTTTGAGGAGTTCATTTTCCATCGTTTTCTTGCCGAGCAGGCGCTGGAGTTCTTTAATCTGCTTCATGGCGGCAGCAAGTTCAGAGGCAGGAACAACCTGTTCTCCGGCGGCGACAGCAGTAAGACTTCCTTCCTGGTATTGCTTACGCCAGAGAAATAACTGGCTGGCTGCTACACCATGTTGCCGGGCAACGAGGGAGACCGTCATCCCCGGTTCAAAGCTCTGCTGAACAATTGCGATCTTTTCCTGTGTGGTACGCCGTCTGCGTTTCTCCGGCCCTAAGACATCAATCATCTGTTCTCCAATGACTAGTCTAAAAACTAGTATTAAGACTATCACTTATTTAAGTGATATTGGTTGTCTGGAGATTCAGGGGGCCAGTCTACTCAATCTCTCCCTCTCTTCGTTACTTTCGACGTTTCTATACATTTCCAT-C-C-A-GAA-GA-AAT--A--A--TTCCAACTCCAATGGCGGTGCGGTCTTGCTCGTCAAGGCTTATATGGATGAGACCACAAATCCAATTTCTAGTTTTGCTAATAAGGTCATCGGTTCACTGCCTGTTTTTGGTCTCATAGCCAGAATTGTCAATGAGGAAGGTGGTGTTGGAGGCGATTTTATTGATTTTGCGGAGTTCAGGAGGCGAGTCGGTAACAAGTGTTCCATTAATGATTCAAGAGCTTTTTATGAATTTCGAGATCGACGTGGCAAGGTAATTTTTACTTGCAATCAAGTGACTTGGTTTTATCTATAGATTATTGACCTTGATTTTCCTTGCCTTATTGATAGACAGGGGATCCTCTGTATGTGCTACTGTGTTGTTGGTTAGCTGCAGTAGGAGCTGGTTT-ACTCAAATCTGAGGAAATTTTGGAAGGGGTAGCAAGGCTTAGTTTAGCAAATGATATTGAATTTGAAGAACAAAACTTCATCGCAATGATG-AATGAAGCAAGGGAGGTTCGTAAGATTTCATTTGCCAACGATTTTTAGCTTCTTTTCATTTATGTTACCTTACTTTCAATGCTTATCAGTAAATTTATAGCATACTTACTCGGATACTGTCTTTGAGGCATACTTCAACTTCTGTTTATGCTTCATTCTTTTGATGTGGTACTTAGAACTCTGCCTCCATGTTGTTCGAATCCTCCAAAACTGCATATATTTTAGAGTATCGACACATGCAGACAGTATTCTTGGACGATTCAAGCAGCATAGCTCTGCCTAACTCTTATTGGGAAGCTTGCTTACAATAGTATATCGAGTAAATTTATGTTTGCAGCTATCCCATTACGGGCTTCATTAGATTTAGCACCAAGCACAGAATGTGCACGGTTTGATAGCCATATATCACACTTATATTTGAACTCTCGTTTATGGTCCAGTGTTATACCCAGTACCATTTTTGCTAACATTTTCCTTTACTCGTGCAGAAGCGATCAAAGTTGGGAGCTCCAGCA-CCTACAATCCCCATGGAATTTCGTGCTGAGAAAGCTCTTGAAGCTATACATGTGTGTTGCTATGGAAGGGATCTGATTGATGAAGAAGATGAAAAACTGCTAAGTACCATGCTTAATGCTGTCTTTCCTACAGTCGGGCGG</genome_strand>
        <mrna_strand>CATGTAAACACTATGGTGGTTGTCTCCTCTCTCCACTCTCCTTCTTCTTCCTCCTCCATCTACT................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCAACTCAATCTCTCCCTCTCTTCGTTATTTTCGACGTTTCTATACATTTCCATCCACAAGGAATAATAATAAAGCAGCTTCCAACTCCAATGGCGGTGCCGTCTTGCTCGTCAAGGCTTATATGGATGAGACCACAAATCCAATTTCCAGTTTCGCTAATAAGGTCATCGGTTCACTCCCTGTTTTTGGTCTCATAGCCAGAATTGTCAATGAGGAAGGTGGTNGTGGTGGTGATTTTATTGATTTTGCTGAGTTCAGGAGGCGAGTCGGTAACAAGTGTTCCATTAATGATTCAAGAGCTTTTTATGAATTTCGAGATCGACGTGGCAAG.............................................................................ACAGGGGATCCTCTGTATGTGCTACTGTGCTGTTGGTTAGCTGCTGTAGGAGCTGGTTTAACTC-AATCTGAGGAAAATTTGGAA-GGGTAGCAAGGCTTAGTTTAGCAAATGATATTGAATTTGAAGAGCAAAACTTCATTGCAATGATGAAATGAAGC-AGAAAG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAACGATCAAAGTTGGGAGCTCCTGCACCCTAC-ATCCCCATGGAATTTCGTGCTGAGAAAGCTCTGGAAGCTATACATGTGTGTTGCTATGGAAGGGATCTGATTGAAGAAGAAGATGAAAAACTGCTAAGTACCATGCTTAATGCCGTCTTTTCTACAGTTGGGCAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0236E02-u8qcS/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E323187" ref_strand="+" ref_description="SGN-E323187 [cTOB-28-E21]">
      <seq>acactatggtggttgtctcctctctccactctccttcttcttcctcctccatctactgtaactcaatctctccctctcttcgttactttcgacgtttctatacatttccatccagaagaaataattccaactccaatggcggtgcggtcttgctcgtcaaggcttatatggatgagaccacaaatccaatttctagttttgctaataaggtcatcggttcactgcctgtttttggtctcatagccagaattgtcaatgaggaaggtggtgttggaggcgattttattgattttgcggagttcaggaggcgagtcggtaacaagtgttccattaatgattcaagagctttttatgaatttcgagatcgacgtggcaagacaggggatcctctgtatgtgctactgtgttgttggttagctgcagtaggagctggtttactcaaatctgaggaaattttggaaggggtagcaaggcttagtttagcaaatgatattgaatttgaagaacaaaacttcatcgcaatgatgaatgaagcaagggagaagcgatcaaagttgggagctccagcacctacaatccccatggaatttcgtgctgagaaagctcttggagctatacatgtgtgttgctatggaagggatctgattgatgaagagatgaaaactgctaagtacatgcttaatgct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0236E02-u8qcS/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0236E02.1" temp_strand="-" temp_description="C02HBa0236E02.1  AC215430.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0236E02 sequenced_by:kribb upload_account_name:korea">
        <position start="73779" stop="70597"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="73479" g_stop="73423" g_length="57"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="57" r_length="57" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="73422" i_stop="72079" i_length="1344">
            <donor d_prob="0.962" d_score="1.00"/>
            <acceptor a_prob="0.000" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="72078" g_stop="71759" g_length="320"/>
          <reference_exon_boundary r_type="cDNA" r_start="58" r_stop="377" r_length="320" r_score="0.991"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="71758" i_stop="71682" i_length="77">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.925" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="71681" g_stop="71517" g_length="165"/>
          <reference_exon_boundary r_type="cDNA" r_start="378" r_stop="542" r_length="165" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="71516" i_stop="71044" i_length="473">
            <donor d_prob="0.981" d_score="1.00"/>
            <acceptor a_prob="0.983" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="71043" g_stop="70897" g_length="147"/>
          <reference_exon_boundary r_type="cDNA" r_start="543" r_stop="686" r_length="144" r_score="0.973"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0236E02.1" gen_strand="-" ref_id="SGN-E323187" ref_strand="+">
        <total_alignment_score>0.990</total_alignment_score>
        <cumulative_length_of_scored_exons>689</cumulative_length_of_scored_exons>
        <coverage percentage="1.004" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0236E02.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E323187" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="73479" e_stop="73423"/>
          <exon e_start="72078" e_stop="71759"/>
          <exon e_start="71681" e_stop="71517"/>
          <exon e_start="71043" e_stop="70897"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACACTATGGTGGTTGTCTCCTCTCTCCACTCTCCTTCTTCTTCCTCCTCCATCTACTGTAACTCAATGGATTTGCCCCTATATTTCCAGACATCTGTTATCACTTAACCCATTACAAGCCCGCTGCCGCAGATATTCCCGTGGCGAGCGATAACCCAGCGCACTATGCGGATGCCATTCGTTATAATGCTCGAACGCCTCTGCAAGGTTCTTTGCTGCCGTTAACCCGTCTGGTTTGGGCATGATACTGATGTAGTCACGCTTTATCGTTTTCACGAAGCTCTCTGCTATTCCGTTACTCTCCGGACTCCGCACCGCCGTGTTCTTCGGTTCAAGTCCCAACATCCGGGCGAACTGGCGTGTTTCATTAGCCCGGTAGCATGAACCATTATCCGTCAGCCACTCCACTGGAGACGACGGAAGATCGTTGCCGAAGCGGCGTTCCACCGCTCCCAGCATGACGTCCTGTACTGTTTCACTGTTGAAGCCGCCGGTAGTGACCGCCCAGTGCAGTGCCTCACGATCACAGCAGTCCAGCGCGAACGTGGACACGCAGTCTCTCTCCGTTATCACAGCAGAACTCGAACCCGTCAGAGCACCATCGCTGATTGCTTTCTTTCACGGCCACTCTGCCCTGTATGTGCCCGGTTTCGATGGCGGTACAGCAGGTTTTCGCTCAAGCAACAGCGCATTCTGGCGCATGATCCGGTAAACACGTTTGGCATTGATCGCAGGCATACCATCAAGTTCTGCCTGTCTGCGAAGCAGCGCCCATACCCGACGATAACCATACGTTGGCAGCTCTCCGATAACATGGTGTATACGGAGAAGCACATCCGTATCATCAGTGTGACGACTGCGGCGGCCATCCATCCCAGTCCATCGGTTCGTCTGAGAATGACGTGCAACTGCGCACGCGACACCCGGAGGACAACGGCTGACTAAGCTTACTCCCCCATTCCCCGGGCAATAAGGGCGCGTGCGCTATCCACTTTTTTGCCCGTCCATATTCAACGGCTTCTTTGAGGAGTTCATTTTCCATCGTTTTCTTGCCGAGCAGGCGCTGGAGTTCTTTAATCTGCTTCATGGCGGCAGCAAGTTCAGAGGCAGGAACAACCTGTTCTCCGGCGGCGACAGCAGTAAGACTTCCTTCCTGGTATTGCTTACGCCAGAGAAATAACTGGCTGGCTGCTACACCATGTTGCCGGGCAACGAGGGAGACCGTCATCCCCGGTTCAAAGCTCTGCTGAACAATTGCGATCTTTTCCTGTGTGGTACGCCGTCTGCGTTTCTCCGGCCCTAAGACATCAATCATCTGTTCTCCAATGACTAGTCTAAAAACTAGTATTAAGACTATCACTTATTTAAGTGATATTGGTTGTCTGGAGATTCAGGGGGCCAGTCTACTCAATCTCTCCCTCTCTTCGTTACTTTCGACGTTTCTATACATTTCCATCCAGAAGAAATAATTCCAACTCCAATGGCGGTGCGGTCTTGCTCGTCAAGGCTTATATGGATGAGACCACAAATCCAATTTCTAGTTTTGCTAATAAGGTCATCGGTTCACTGCCTGTTTTTGGTCTCATAGCCAGAATTGTCAATGAGGAAGGTGGTGTTGGAGGCGATTTTATTGATTTTGCGGAGTTCAGGAGGCGAGTCGGTAACAAGTGTTCCATTAATGATTCAAGAGCTTTTTATGAATTTCGAGATCGACGTGGCAAGGTAATTTTTACTTGCAATCAAGTGACTTGGTTTTATCTATAGATTATTGACCTTGATTTTCCTTGCCTTATTGATAGACAGGGGATCCTCTGTATGTGCTACTGTGTTGTTGGTTAGCTGCAGTAGGAGCTGGTTTACTCAAATCTGAGGAAATTTTGGAAGGGGTAGCAAGGCTTAGTTTAGCAAATGATATTGAATTTGAAGAACAAAACTTCATCGCAATGATGAATGAAGCAAGGGAGGTTCGTAAGATTTCATTTGCCAACGATTTTTAGCTTCTTTTCATTTATGTTACCTTACTTTCAATGCTTATCAGTAAATTTATAGCATACTTACTCGGATACTGTCTTTGAGGCATACTTCAACTTCTGTTTATGCTTCATTCTTTTGATGTGGTACTTAGAACTCTGCCTCCATGTTGTTCGAATCCTCCAAAACTGCATATATTTTAGAGTATCGACACATGCAGACAGTATTCTTGGACGATTCAAGCAGCATAGCTCTGCCTAACTCTTATTGGGAAGCTTGCTTACAATAGTATATCGAGTAAATTTATGTTTGCAGCTATCCCATTACGGGCTTCATTAGATTTAGCACCAAGCACAGAATGTGCACGGTTTGATAGCCATATATCACACTTATATTTGAACTCTCGTTTATGGTCCAGTGTTATACCCAGTACCATTTTTGCTAACATTTTCCTTTACTCGTGCAGAAGCGATCAAAGTTGGGAGCTCCAGCACCTACAATCCCCATGGAATTTCGTGCTGAGAAAGCTCTTGAAGCTATACATGTGTGTTGCTATGGAAGGGATCTGATTGATGAAGAAGATGAAAAACTGCTAAGTACCATGCTTAATGCT</genome_strand>
        <mrna_strand>ACACTATGGTGGTTGTCTCCTCTCTCCACTCTCCTTCTTCTTCCTCCTCCATCTACT................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTAACTCAATCTCTCCCTCTCTTCGTTACTTTCGACGTTTCTATACATTTCCATCCAGAAGAAATAATTCCAACTCCAATGGCGGTGCGGTCTTGCTCGTCAAGGCTTATATGGATGAGACCACAAATCCAATTTCTAGTTTTGCTAATAAGGTCATCGGTTCACTGCCTGTTTTTGGTCTCATAGCCAGAATTGTCAATGAGGAAGGTGGTGTTGGAGGCGATTTTATTGATTTTGCGGAGTTCAGGAGGCGAGTCGGTAACAAGTGTTCCATTAATGATTCAAGAGCTTTTTATGAATTTCGAGATCGACGTGGCAAG.............................................................................ACAGGGGATCCTCTGTATGTGCTACTGTGTTGTTGGTTAGCTGCAGTAGGAGCTGGTTTACTCAAATCTGAGGAAATTTTGGAAGGGGTAGCAAGGCTTAGTTTAGCAAATGATATTGAATTTGAAGAACAAAACTTCATCGCAATGATGAATGAAGCAAGGGAG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAGCGATCAAAGTTGGGAGCTCCAGCACCTACAATCCCCATGGAATTTCGTGCTGAGAAAGCTCTTGGAGCTATACATGTGTGTTGCTATGGAAGGGATCTGATTGATGAAG-AGATG-AAAACTGCTAAGTA-CATGCTTAATGCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0236E02-u8qcS/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E206443" ref_strand="+" ref_description="SGN-E206443 [cLEC-23-M5]">
      <seq>tccactctccttcttcttcctcctccatctactgtaactcaatctctccctctcttcgttactttcgacgtttctatacatttccatccagaagaaataattccaactccaatggcggtgcggtcttgctcgtcaaggcttatatggatgagaccacaaatccaatttctagttttgctaataaggtcatcggttcactgcctgtttttggtctcatagccagaattgtcaatgaggaaggtggtgttggaggcgattttattgattttgcggagttcaggaggcgagtcggtaacaagtgttccattaatgattcaagagctttttatgaatttcgagatcgacgtggcaagacaggggatcctctgtatgtgctactgtgttgttggttagctgcagtaggagctggtttactcaaatctgaggaaattttggaaggggtagcaaggcttttagcaaatgatattgaatttgaagaacaaaacttcatcgcaatgatgaatgaagcaagggagaagcgatcaaagttgggagctccagcacctacaatccccatggaatttcgtgctgagaaagctcttgaagctatacatgtgtg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0236E02-u8qcS/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0236E02.1" temp_strand="-" temp_description="C02HBa0236E02.1  AC215430.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0236E02 sequenced_by:kribb upload_account_name:korea">
        <position start="73755" stop="70661"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="73455" g_stop="73423" g_length="33"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="33" r_length="33" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="73422" i_stop="72079" i_length="1344">
            <donor d_prob="0.962" d_score="0.00"/>
            <acceptor a_prob="0.000" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="72078" g_stop="71759" g_length="320"/>
          <reference_exon_boundary r_type="cDNA" r_start="34" r_stop="353" r_length="320" r_score="0.991"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="71758" i_stop="71682" i_length="77">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.925" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="71681" g_stop="71517" g_length="165"/>
          <reference_exon_boundary r_type="cDNA" r_start="354" r_stop="515" r_length="162" r_score="0.982"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="71516" i_stop="71044" i_length="473">
            <donor d_prob="0.981" d_score="1.00"/>
            <acceptor a_prob="0.983" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="71043" g_stop="70961" g_length="83"/>
          <reference_exon_boundary r_type="cDNA" r_start="516" r_stop="598" r_length="83" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0236E02.1" gen_strand="-" ref_id="SGN-E206443" ref_strand="+">
        <total_alignment_score>0.989</total_alignment_score>
        <cumulative_length_of_scored_exons>601</cumulative_length_of_scored_exons>
        <coverage percentage="1.005" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0236E02.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E206443" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="73455" e_stop="73423"/>
          <exon e_start="72078" e_stop="71759"/>
          <exon e_start="71681" e_stop="71517"/>
          <exon e_start="71043" e_stop="70961"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCCACTCTCCTTCTTCTTCCTCCTCCATCTACTGTAACTCAATGGATTTGCCCCTATATTTCCAGACATCTGTTATCACTTAACCCATTACAAGCCCGCTGCCGCAGATATTCCCGTGGCGAGCGATAACCCAGCGCACTATGCGGATGCCATTCGTTATAATGCTCGAACGCCTCTGCAAGGTTCTTTGCTGCCGTTAACCCGTCTGGTTTGGGCATGATACTGATGTAGTCACGCTTTATCGTTTTCACGAAGCTCTCTGCTATTCCGTTACTCTCCGGACTCCGCACCGCCGTGTTCTTCGGTTCAAGTCCCAACATCCGGGCGAACTGGCGTGTTTCATTAGCCCGGTAGCATGAACCATTATCCGTCAGCCACTCCACTGGAGACGACGGAAGATCGTTGCCGAAGCGGCGTTCCACCGCTCCCAGCATGACGTCCTGTACTGTTTCACTGTTGAAGCCGCCGGTAGTGACCGCCCAGTGCAGTGCCTCACGATCACAGCAGTCCAGCGCGAACGTGGACACGCAGTCTCTCTCCGTTATCACAGCAGAACTCGAACCCGTCAGAGCACCATCGCTGATTGCTTTCTTTCACGGCCACTCTGCCCTGTATGTGCCCGGTTTCGATGGCGGTACAGCAGGTTTTCGCTCAAGCAACAGCGCATTCTGGCGCATGATCCGGTAAACACGTTTGGCATTGATCGCAGGCATACCATCAAGTTCTGCCTGTCTGCGAAGCAGCGCCCATACCCGACGATAACCATACGTTGGCAGCTCTCCGATAACATGGTGTATACGGAGAAGCACATCCGTATCATCAGTGTGACGACTGCGGCGGCCATCCATCCCAGTCCATCGGTTCGTCTGAGAATGACGTGCAACTGCGCACGCGACACCCGGAGGACAACGGCTGACTAAGCTTACTCCCCCATTCCCCGGGCAATAAGGGCGCGTGCGCTATCCACTTTTTTGCCCGTCCATATTCAACGGCTTCTTTGAGGAGTTCATTTTCCATCGTTTTCTTGCCGAGCAGGCGCTGGAGTTCTTTAATCTGCTTCATGGCGGCAGCAAGTTCAGAGGCAGGAACAACCTGTTCTCCGGCGGCGACAGCAGTAAGACTTCCTTCCTGGTATTGCTTACGCCAGAGAAATAACTGGCTGGCTGCTACACCATGTTGCCGGGCAACGAGGGAGACCGTCATCCCCGGTTCAAAGCTCTGCTGAACAATTGCGATCTTTTCCTGTGTGGTACGCCGTCTGCGTTTCTCCGGCCCTAAGACATCAATCATCTGTTCTCCAATGACTAGTCTAAAAACTAGTATTAAGACTATCACTTATTTAAGTGATATTGGTTGTCTGGAGATTCAGGGGGCCAGTCTACTCAATCTCTCCCTCTCTTCGTTACTTTCGACGTTTCTATACATTTCCATCCAGAAGAAATAATTCCAACTCCAATGGCGGTGCGGTCTTGCTCGTCAAGGCTTATATGGATGAGACCACAAATCCAATTTCTAGTTTTGCTAATAAGGTCATCGGTTCACTGCCTGTTTTTGGTCTCATAGCCAGAATTGTCAATGAGGAAGGTGGTGTTGGAGGCGATTTTATTGATTTTGCGGAGTTCAGGAGGCGAGTCGGTAACAAGTGTTCCATTAATGATTCAAGAGCTTTTTATGAATTTCGAGATCGACGTGGCAAGGTAATTTTTACTTGCAATCAAGTGACTTGGTTTTATCTATAGATTATTGACCTTGATTTTCCTTGCCTTATTGATAGACAGGGGATCCTCTGTATGTGCTACTGTGTTGTTGGTTAGCTGCAGTAGGAGCTGGTTTACTCAAATCTGAGGAAATTTTGGAAGGGGTAGCAAGGCTTAGTTTAGCAAATGATATTGAATTTGAAGAACAAAACTTCATCGCAATGATGAATGAAGCAAGGGAGGTTCGTAAGATTTCATTTGCCAACGATTTTTAGCTTCTTTTCATTTATGTTACCTTACTTTCAATGCTTATCAGTAAATTTATAGCATACTTACTCGGATACTGTCTTTGAGGCATACTTCAACTTCTGTTTATGCTTCATTCTTTTGATGTGGTACTTAGAACTCTGCCTCCATGTTGTTCGAATCCTCCAAAACTGCATATATTTTAGAGTATCGACACATGCAGACAGTATTCTTGGACGATTCAAGCAGCATAGCTCTGCCTAACTCTTATTGGGAAGCTTGCTTACAATAGTATATCGAGTAAATTTATGTTTGCAGCTATCCCATTACGGGCTTCATTAGATTTAGCACCAAGCACAGAATGTGCACGGTTTGATAGCCATATATCACACTTATATTTGAACTCTCGTTTATGGTCCAGTGTTATACCCAGTACCATTTTTGCTAACATTTTCCTTTACTCGTGCAGAAGCGATCAAAGTTGGGAGCTCCAGCACCTACAATCCCCATGGAATTTCGTGCTGAGAAAGCTCTTGAAGCTATACATGTGTG</genome_strand>
        <mrna_strand>TCCACTCTCCTTCTTCTTCCTCCTCCATCTACT................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTAACTCAATCTCTCCCTCTCTTCGTTACTTTCGACGTTTCTATACATTTCCATCCAGAAGAAATAATTCCAACTCCAATGGCGGTGCGGTCTTGCTCGTCAAGGCTTATATGGATGAGACCACAAATCCAATTTCTAGTTTTGCTAATAAGGTCATCGGTTCACTGCCTGTTTTTGGTCTCATAGCCAGAATTGTCAATGAGGAAGGTGGTGTTGGAGGCGATTTTATTGATTTTGCGGAGTTCAGGAGGCGAGTCGGTAACAAGTGTTCCATTAATGATTCAAGAGCTTTTTATGAATTTCGAGATCGACGTGGCAAG.............................................................................ACAGGGGATCCTCTGTATGTGCTACTGTGTTGTTGGTTAGCTGCAGTAGGAGCTGGTTTACTCAAATCTGAGGAAATTTTGGAAGGGGTAGCAAGGC-T--TTTAGCAAATGATATTGAATTTGAAGAACAAAACTTCATCGCAATGATGAATGAAGCAAGGGAG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAGCGATCAAAGTTGGGAGCTCCAGCACCTACAATCCCCATGGAATTTCGTGCTGAGAAAGCTCTTGAAGCTATACATGTGTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0236E02-u8qcS/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E253860" ref_strand="+" ref_description="SGN-E253860 [cLEG-28-F4]">
      <seq>tactgtaactcaatctctccctctcttcgttactttcgacgtttctatacatttccatccagaagaaataattccaactccaatggcggtgcggtcttgctcgtcaaggcttatatggatgagaccacaaatccaatttctagttttgctaataaggtcatcggttcactgcctgtttttggtctcatagccagaattgtcaatgaggaaggtggtgttggaggcgattttattgattttgcggagttcacgaggcgagtcggtaacaagtgttccattaatgattcaagagctttttatgaatttcgagatcgacgtggcaagacaggggatcctctgtatgtgctactgtgttgttggttagctgcagtaggagctggtttactcaaatctgaggaaattttggaaggggtagcaaggcttagtttagcaaatgatattgaatttgaagaacaaaacttcatcgcaatgatgaatgaagcaagggagaagcgatcaaagttgggagctccagcacctacaatccccatggaatttcgtgctgagaaagctcttgaagctatacatgtgtg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0236E02-u8qcS/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0236E02.1" temp_strand="-" temp_description="C02HBa0236E02.1  AC215430.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0236E02 sequenced_by:kribb upload_account_name:korea">
        <position start="72380" stop="70661"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="72081" g_stop="71759" g_length="323"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="324" r_length="324" r_score="0.981"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="71758" i_stop="71682" i_length="77">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.925" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="71681" g_stop="71517" g_length="165"/>
          <reference_exon_boundary r_type="cDNA" r_start="325" r_stop="489" r_length="165" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="71516" i_stop="71044" i_length="473">
            <donor d_prob="0.981" d_score="1.00"/>
            <acceptor a_prob="0.983" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="71043" g_stop="70961" g_length="83"/>
          <reference_exon_boundary r_type="cDNA" r_start="490" r_stop="572" r_length="83" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0236E02.1" gen_strand="-" ref_id="SGN-E253860" ref_strand="+">
        <total_alignment_score>0.989</total_alignment_score>
        <cumulative_length_of_scored_exons>571</cumulative_length_of_scored_exons>
        <coverage percentage="0.998" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0236E02.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E253860" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="72081" e_stop="71759"/>
          <exon e_start="71681" e_stop="71517"/>
          <exon e_start="71043" e_stop="70961"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAGTCTA-CTCAATCTCTCCCTCTCTTCGTTACTTTCGACGTTTCTATACATTTCCATCCAGAAGAAATAATTCCAACTCCAATGGCGGTGCGGTCTTGCTCGTCAAGGCTTATATGGATGAGACCACAAATCCAATTTCTAGTTTTGCTAATAAGGTCATCGGTTCACTGCCTGTTTTTGGTCTCATAGCCAGAATTGTCAATGAGGAAGGTGGTGTTGGAGGCGATTTTATTGATTTTGCGGAGTTCAGGAGGCGAGTCGGTAACAAGTGTTCCATTAATGATTCAAGAGCTTTTTATGAATTTCGAGATCGACGTGGCAAGGTAATTTTTACTTGCAATCAAGTGACTTGGTTTTATCTATAGATTATTGACCTTGATTTTCCTTGCCTTATTGATAGACAGGGGATCCTCTGTATGTGCTACTGTGTTGTTGGTTAGCTGCAGTAGGAGCTGGTTTACTCAAATCTGAGGAAATTTTGGAAGGGGTAGCAAGGCTTAGTTTAGCAAATGATATTGAATTTGAAGAACAAAACTTCATCGCAATGATGAATGAAGCAAGGGAGGTTCGTAAGATTTCATTTGCCAACGATTTTTAGCTTCTTTTCATTTATGTTACCTTACTTTCAATGCTTATCAGTAAATTTATAGCATACTTACTCGGATACTGTCTTTGAGGCATACTTCAACTTCTGTTTATGCTTCATTCTTTTGATGTGGTACTTAGAACTCTGCCTCCATGTTGTTCGAATCCTCCAAAACTGCATATATTTTAGAGTATCGACACATGCAGACAGTATTCTTGGACGATTCAAGCAGCATAGCTCTGCCTAACTCTTATTGGGAAGCTTGCTTACAATAGTATATCGAGTAAATTTATGTTTGCAGCTATCCCATTACGGGCTTCATTAGATTTAGCACCAAGCACAGAATGTGCACGGTTTGATAGCCATATATCACACTTATATTTGAACTCTCGTTTATGGTCCAGTGTTATACCCAGTACCATTTTTGCTAACATTTTCCTTTACTCGTGCAGAAGCGATCAAAGTTGGGAGCTCCAGCACCTACAATCCCCATGGAATTTCGTGCTGAGAAAGCTCTTGAAGCTATACATGTGTG</genome_strand>
        <mrna_strand>TACTGTAACTCAATCTCTCCCTCTCTTCGTTACTTTCGACGTTTCTATACATTTCCATCCAGAAGAAATAATTCCAACTCCAATGGCGGTGCGGTCTTGCTCGTCAAGGCTTATATGGATGAGACCACAAATCCAATTTCTAGTTTTGCTAATAAGGTCATCGGTTCACTGCCTGTTTTTGGTCTCATAGCCAGAATTGTCAATGAGGAAGGTGGTGTTGGAGGCGATTTTATTGATTTTGCGGAGTTCACGAGGCGAGTCGGTAACAAGTGTTCCATTAATGATTCAAGAGCTTTTTATGAATTTCGAGATCGACGTGGCAAG.............................................................................ACAGGGGATCCTCTGTATGTGCTACTGTGTTGTTGGTTAGCTGCAGTAGGAGCTGGTTTACTCAAATCTGAGGAAATTTTGGAAGGGGTAGCAAGGCTTAGTTTAGCAAATGATATTGAATTTGAAGAACAAAACTTCATCGCAATGATGAATGAAGCAAGGGAG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAGCGATCAAAGTTGGGAGCTCCAGCACCTACAATCCCCATGGAATTTCGTGCTGAGAAAGCTCTTGAAGCTATACATGTGTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0236E02-u8qcS/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E296342" ref_strand="+" ref_description="SGN-E296342 [cLET-19-D16]">
      <seq>gattttattgattttttggagtttaggaggcgagtcggtaacaagtgttccattaatgattcaagagctttttatgaatttcgagatcgacgtggcaagacaggggatcctctgtatgtgctactgtgttgttggttagctgcagtaggagctggtttactcaaatctgaggaaattttggaaggggtagcaaggcttagtttagcaaatgatattgaatttgaagaacaaaacttcatcgcaatgatgaatgaagcaagggagaagcgatcaaagttgggagctccagcac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0236E02-u8qcS/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0236E02.1" temp_strand="-" temp_description="C02HBa0236E02.1  AC215430.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0236E02 sequenced_by:kribb upload_account_name:korea">
        <position start="72157" stop="70716"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="71857" g_stop="71759" g_length="99"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="99" r_length="99" r_score="0.970"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="71758" i_stop="71682" i_length="77">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.925" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="71681" g_stop="71517" g_length="165"/>
          <reference_exon_boundary r_type="cDNA" r_start="100" r_stop="264" r_length="165" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="71516" i_stop="71044" i_length="473">
            <donor d_prob="0.981" d_score="1.00"/>
            <acceptor a_prob="0.983" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="71043" g_stop="71016" g_length="28"/>
          <reference_exon_boundary r_type="cDNA" r_start="265" r_stop="292" r_length="28" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0236E02.1" gen_strand="-" ref_id="SGN-E296342" ref_strand="+">
        <total_alignment_score>0.989</total_alignment_score>
        <cumulative_length_of_scored_exons>292</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0236E02.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E296342" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="71857" e_stop="71759"/>
          <exon e_start="71681" e_stop="71517"/>
          <exon e_start="71043" e_stop="71016"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GATTTTATTGATTTTGCGGAGTTCAGGAGGCGAGTCGGTAACAAGTGTTCCATTAATGATTCAAGAGCTTTTTATGAATTTCGAGATCGACGTGGCAAGGTAATTTTTACTTGCAATCAAGTGACTTGGTTTTATCTATAGATTATTGACCTTGATTTTCCTTGCCTTATTGATAGACAGGGGATCCTCTGTATGTGCTACTGTGTTGTTGGTTAGCTGCAGTAGGAGCTGGTTTACTCAAATCTGAGGAAATTTTGGAAGGGGTAGCAAGGCTTAGTTTAGCAAATGATATTGAATTTGAAGAACAAAACTTCATCGCAATGATGAATGAAGCAAGGGAGGTTCGTAAGATTTCATTTGCCAACGATTTTTAGCTTCTTTTCATTTATGTTACCTTACTTTCAATGCTTATCAGTAAATTTATAGCATACTTACTCGGATACTGTCTTTGAGGCATACTTCAACTTCTGTTTATGCTTCATTCTTTTGATGTGGTACTTAGAACTCTGCCTCCATGTTGTTCGAATCCTCCAAAACTGCATATATTTTAGAGTATCGACACATGCAGACAGTATTCTTGGACGATTCAAGCAGCATAGCTCTGCCTAACTCTTATTGGGAAGCTTGCTTACAATAGTATATCGAGTAAATTTATGTTTGCAGCTATCCCATTACGGGCTTCATTAGATTTAGCACCAAGCACAGAATGTGCACGGTTTGATAGCCATATATCACACTTATATTTGAACTCTCGTTTATGGTCCAGTGTTATACCCAGTACCATTTTTGCTAACATTTTCCTTTACTCGTGCAGAAGCGATCAAAGTTGGGAGCTCCAGCAC</genome_strand>
        <mrna_strand>GATTTTATTGATTTTTTGGAGTTTAGGAGGCGAGTCGGTAACAAGTGTTCCATTAATGATTCAAGAGCTTTTTATGAATTTCGAGATCGACGTGGCAAG.............................................................................ACAGGGGATCCTCTGTATGTGCTACTGTGTTGTTGGTTAGCTGCAGTAGGAGCTGGTTTACTCAAATCTGAGGAAATTTTGGAAGGGGTAGCAAGGCTTAGTTTAGCAAATGATATTGAATTTGAAGAACAAAACTTCATCGCAATGATGAATGAAGCAAGGGAG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAGCGATCAAAGTTGGGAGCTCCAGCAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0236E02-u8qcS/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E367370" ref_strand="+" ref_description="SGN-E367370 [cLPT-7-E6]">
      <seq>tgctaaatctgatgaagcccgcaatgggatagctgcaaacataaatttactcgatatattgtaagcaagcttcccaataagagttaggcagagctatgctgcttgaatcgtccaagaatactgtctgcatgtgtcgatactctaaaatatatgcagttttggaggattcgaacaacatggaggcagagttctaagtaccacatcaaaagaatgaagcataaacagaagttgaagtatgcctcaaagacagtatccgagtaagtatgctataaatttactgataagcattgaaagtaaggtaacataaatgaaaagaagctaaaaatctgtggcaaatgaaatcttactaacctcccttgcttcattcatcattgcgatgaagttctgttcttcaaattcaatatcatttgctaaactaagccttgctaccccttccaaaatttcctcagatttgagt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0236E02-u8qcS/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0236E02.1" temp_strand="+" temp_description="C02HBa0236E02.1  AC215430.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0236E02 sequenced_by:kribb upload_account_name:korea">
        <position start="70863" stop="71922"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="71163" g_stop="71622" g_length="460"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="457" r_length="457" r_score="0.980"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0236E02.1" gen_strand="+" ref_id="SGN-E367370" ref_strand="+">
        <total_alignment_score>0.980</total_alignment_score>
        <cumulative_length_of_scored_exons>460</cumulative_length_of_scored_exons>
        <coverage percentage="1.007" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0236E02.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E367370" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="71163" e_stop="71622"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGCTAAATCTAATGAAGCCCGTAATGGGATAGCTGCAAACATAAATTTACTCGATATACTATTGTAAGCAAGCTTCCCAATAAGAGTTAGGCAGAGCTATGCTGCTTGAATCGTCCAAGAATACTGTCTGCATGTGTCGATACTCTAAAATATATGCAGTTTTGGAGGATTCGAACAACATGGAGGCAGAGTTCTAAGTACCACATCAAAAGAATGAAGCATAAACAGAAGTTGAAGTATGCCTCAAAGACAGTATCCGAGTAAGTATGCTATAAATTTACTGATAAGCATTGAAAGTAAGGTAACATAAATGAAAAGAAGCTAAAAATCGTTGGCAAATGAAATCTTACGAACCTCCCTTGCTTCATTCATCATTGCGATGAAGTTTTGTTCTTCAAATTCAATATCATTTGCTAAACTAAGCCTTGCTACCCCTTCCAAAATTTCCTCAGATTTGAGT</genome_strand>
        <mrna_strand>TGCTAAATCTGATGAAGCCCGCAATGGGATAGCTGCAAACATAAATTTACTCG--ATA-TATTGTAAGCAAGCTTCCCAATAAGAGTTAGGCAGAGCTATGCTGCTTGAATCGTCCAAGAATACTGTCTGCATGTGTCGATACTCTAAAATATATGCAGTTTTGGAGGATTCGAACAACATGGAGGCAGAGTTCTAAGTACCACATCAAAAGAATGAAGCATAAACAGAAGTTGAAGTATGCCTCAAAGACAGTATCCGAGTAAGTATGCTATAAATTTACTGATAAGCATTGAAAGTAAGGTAACATAAATGAAAAGAAGCTAAAAATCTGTGGCAAATGAAATCTTACTAACCTCCCTTGCTTCATTCATCATTGCGATGAAGTTCTGTTCTTCAAATTCAATATCATTTGCTAAACTAAGCCTTGCTACCCCTTCCAAAATTTCCTCAGATTTGAGT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0236E02-u8qcS/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E278752" ref_strand="+" ref_description="SGN-E278752 [cLER-2-E22]">
      <seq>ggttgtctcctctctccactctccttcttcttcctcctccatctactgtaactcaatctctccctctcttcgttactttcgacgtttctatacatttccatccagaagaaataattccaactccaatggcggtgcggtcttgctcgtcaaggcttatatggatgagaccacaaatccaatttctagttttgctaataaggtcatcggttcactgcctgtttttggtctcatagccagaattgtcaatgaggaaggtggtgttggaggcgattttattgattttgcggagttcaggaggcgagtcggtaacaagtgttccattaatgattcaagagctttttatgaatttcgagatcgacgtggcaagacaggggatcctctgtatgtgctactgtgttgttggttagctgcagtaggagctggtttactcaaatctgaggaaattttggaaggggtagcaaggcttagtttagcaaatgatattgaatttgaagaacaaaacttcatcgcaatgatgaatgaagcaagggagaagcgat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0236E02-u8qcS/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0236E02.1" temp_strand="-" temp_description="C02HBa0236E02.1  AC215430.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0236E02 sequenced_by:kribb upload_account_name:korea">
        <position start="73769" stop="71217"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="73469" g_stop="73423" g_length="47"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="47" r_length="47" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="73422" i_stop="72079" i_length="1344">
            <donor d_prob="0.962" d_score="1.00"/>
            <acceptor a_prob="0.000" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="72078" g_stop="71759" g_length="320"/>
          <reference_exon_boundary r_type="cDNA" r_start="48" r_stop="367" r_length="320" r_score="0.991"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="71758" i_stop="71682" i_length="77">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.925" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="71681" g_stop="71517" g_length="165"/>
          <reference_exon_boundary r_type="cDNA" r_start="368" r_stop="532" r_length="165" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0236E02.1" gen_strand="-" ref_id="SGN-E278752" ref_strand="+">
        <total_alignment_score>0.994</total_alignment_score>
        <cumulative_length_of_scored_exons>532</cumulative_length_of_scored_exons>
        <coverage percentage="0.987" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0236E02.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E278752" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="73469" e_stop="73423"/>
          <exon e_start="72078" e_stop="71759"/>
          <exon e_start="71681" e_stop="71517"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGTTGTCTCCTCTCTCCACTCTCCTTCTTCTTCCTCCTCCATCTACTGTAACTCAATGGATTTGCCCCTATATTTCCAGACATCTGTTATCACTTAACCCATTACAAGCCCGCTGCCGCAGATATTCCCGTGGCGAGCGATAACCCAGCGCACTATGCGGATGCCATTCGTTATAATGCTCGAACGCCTCTGCAAGGTTCTTTGCTGCCGTTAACCCGTCTGGTTTGGGCATGATACTGATGTAGTCACGCTTTATCGTTTTCACGAAGCTCTCTGCTATTCCGTTACTCTCCGGACTCCGCACCGCCGTGTTCTTCGGTTCAAGTCCCAACATCCGGGCGAACTGGCGTGTTTCATTAGCCCGGTAGCATGAACCATTATCCGTCAGCCACTCCACTGGAGACGACGGAAGATCGTTGCCGAAGCGGCGTTCCACCGCTCCCAGCATGACGTCCTGTACTGTTTCACTGTTGAAGCCGCCGGTAGTGACCGCCCAGTGCAGTGCCTCACGATCACAGCAGTCCAGCGCGAACGTGGACACGCAGTCTCTCTCCGTTATCACAGCAGAACTCGAACCCGTCAGAGCACCATCGCTGATTGCTTTCTTTCACGGCCACTCTGCCCTGTATGTGCCCGGTTTCGATGGCGGTACAGCAGGTTTTCGCTCAAGCAACAGCGCATTCTGGCGCATGATCCGGTAAACACGTTTGGCATTGATCGCAGGCATACCATCAAGTTCTGCCTGTCTGCGAAGCAGCGCCCATACCCGACGATAACCATACGTTGGCAGCTCTCCGATAACATGGTGTATACGGAGAAGCACATCCGTATCATCAGTGTGACGACTGCGGCGGCCATCCATCCCAGTCCATCGGTTCGTCTGAGAATGACGTGCAACTGCGCACGCGACACCCGGAGGACAACGGCTGACTAAGCTTACTCCCCCATTCCCCGGGCAATAAGGGCGCGTGCGCTATCCACTTTTTTGCCCGTCCATATTCAACGGCTTCTTTGAGGAGTTCATTTTCCATCGTTTTCTTGCCGAGCAGGCGCTGGAGTTCTTTAATCTGCTTCATGGCGGCAGCAAGTTCAGAGGCAGGAACAACCTGTTCTCCGGCGGCGACAGCAGTAAGACTTCCTTCCTGGTATTGCTTACGCCAGAGAAATAACTGGCTGGCTGCTACACCATGTTGCCGGGCAACGAGGGAGACCGTCATCCCCGGTTCAAAGCTCTGCTGAACAATTGCGATCTTTTCCTGTGTGGTACGCCGTCTGCGTTTCTCCGGCCCTAAGACATCAATCATCTGTTCTCCAATGACTAGTCTAAAAACTAGTATTAAGACTATCACTTATTTAAGTGATATTGGTTGTCTGGAGATTCAGGGGGCCAGTCTACTCAATCTCTCCCTCTCTTCGTTACTTTCGACGTTTCTATACATTTCCATCCAGAAGAAATAATTCCAACTCCAATGGCGGTGCGGTCTTGCTCGTCAAGGCTTATATGGATGAGACCACAAATCCAATTTCTAGTTTTGCTAATAAGGTCATCGGTTCACTGCCTGTTTTTGGTCTCATAGCCAGAATTGTCAATGAGGAAGGTGGTGTTGGAGGCGATTTTATTGATTTTGCGGAGTTCAGGAGGCGAGTCGGTAACAAGTGTTCCATTAATGATTCAAGAGCTTTTTATGAATTTCGAGATCGACGTGGCAAGGTAATTTTTACTTGCAATCAAGTGACTTGGTTTTATCTATAGATTATTGACCTTGATTTTCCTTGCCTTATTGATAGACAGGGGATCCTCTGTATGTGCTACTGTGTTGTTGGTTAGCTGCAGTAGGAGCTGGTTTACTCAAATCTGAGGAAATTTTGGAAGGGGTAGCAAGGCTTAGTTTAGCAAATGATATTGAATTTGAAGAACAAAACTTCATCGCAATGATGAATGAAGCAAGGGAG</genome_strand>
        <mrna_strand>GGTTGTCTCCTCTCTCCACTCTCCTTCTTCTTCCTCCTCCATCTACT................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTAACTCAATCTCTCCCTCTCTTCGTTACTTTCGACGTTTCTATACATTTCCATCCAGAAGAAATAATTCCAACTCCAATGGCGGTGCGGTCTTGCTCGTCAAGGCTTATATGGATGAGACCACAAATCCAATTTCTAGTTTTGCTAATAAGGTCATCGGTTCACTGCCTGTTTTTGGTCTCATAGCCAGAATTGTCAATGAGGAAGGTGGTGTTGGAGGCGATTTTATTGATTTTGCGGAGTTCAGGAGGCGAGTCGGTAACAAGTGTTCCATTAATGATTCAAGAGCTTTTTATGAATTTCGAGATCGACGTGGCAAG.............................................................................ACAGGGGATCCTCTGTATGTGCTACTGTGTTGTTGGTTAGCTGCAGTAGGAGCTGGTTTACTCAAATCTGAGGAAATTTTGGAAGGGGTAGCAAGGCTTAGTTTAGCAAATGATATTGAATTTGAAGAACAAAACTTCATCGCAATGATGAATGAAGCAAGGGAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0236E02-u8qcS/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E285854" ref_strand="+" ref_description="SGN-E285854 [cLES-5-H22]">
      <seq>tccactctccttcttcttcctcctccatctactgtaactcaatctctccctctcttcgttactttcgacgtttctatacatttccatccagaagaaataattccaactccaatggcggtgcggtcttgctcgtcaaggcttatatggatgagaccacaaatccaatttctagttttgctaataaggtcatcggttcactgcctgtttttggtctcatagccagaattgtcaatgaggaaggtggtgttggaggcgattttattgattttgcggagttcaggaggcgagtcggtaacaagtgttccattaatgattcaagagctttttatgaatttcgagatcgacgtggcaagacaggggatcctctgtatgtgctactgtgttgttggttagctgcagtaggagctggtttactcaaatctgaggaaattttggaaggggtagcaaggcttagtttagcaaatgatattgaatttgaagaacaaaacttcatcgcaatgatgaatgaagcaagggagaagcgat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0236E02-u8qcS/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0236E02.1" temp_strand="-" temp_description="C02HBa0236E02.1  AC215430.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0236E02 sequenced_by:kribb upload_account_name:korea">
        <position start="73755" stop="71217"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="73455" g_stop="73423" g_length="33"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="33" r_length="33" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="73422" i_stop="72079" i_length="1344">
            <donor d_prob="0.962" d_score="0.00"/>
            <acceptor a_prob="0.000" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="72078" g_stop="71759" g_length="320"/>
          <reference_exon_boundary r_type="cDNA" r_start="34" r_stop="353" r_length="320" r_score="0.991"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="71758" i_stop="71682" i_length="77">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.925" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="71681" g_stop="71517" g_length="165"/>
          <reference_exon_boundary r_type="cDNA" r_start="354" r_stop="518" r_length="165" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0236E02.1" gen_strand="-" ref_id="SGN-E285854" ref_strand="+">
        <total_alignment_score>0.994</total_alignment_score>
        <cumulative_length_of_scored_exons>518</cumulative_length_of_scored_exons>
        <coverage percentage="0.987" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0236E02.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E285854" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="73455" e_stop="73423"/>
          <exon e_start="72078" e_stop="71759"/>
          <exon e_start="71681" e_stop="71517"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCCACTCTCCTTCTTCTTCCTCCTCCATCTACTGTAACTCAATGGATTTGCCCCTATATTTCCAGACATCTGTTATCACTTAACCCATTACAAGCCCGCTGCCGCAGATATTCCCGTGGCGAGCGATAACCCAGCGCACTATGCGGATGCCATTCGTTATAATGCTCGAACGCCTCTGCAAGGTTCTTTGCTGCCGTTAACCCGTCTGGTTTGGGCATGATACTGATGTAGTCACGCTTTATCGTTTTCACGAAGCTCTCTGCTATTCCGTTACTCTCCGGACTCCGCACCGCCGTGTTCTTCGGTTCAAGTCCCAACATCCGGGCGAACTGGCGTGTTTCATTAGCCCGGTAGCATGAACCATTATCCGTCAGCCACTCCACTGGAGACGACGGAAGATCGTTGCCGAAGCGGCGTTCCACCGCTCCCAGCATGACGTCCTGTACTGTTTCACTGTTGAAGCCGCCGGTAGTGACCGCCCAGTGCAGTGCCTCACGATCACAGCAGTCCAGCGCGAACGTGGACACGCAGTCTCTCTCCGTTATCACAGCAGAACTCGAACCCGTCAGAGCACCATCGCTGATTGCTTTCTTTCACGGCCACTCTGCCCTGTATGTGCCCGGTTTCGATGGCGGTACAGCAGGTTTTCGCTCAAGCAACAGCGCATTCTGGCGCATGATCCGGTAAACACGTTTGGCATTGATCGCAGGCATACCATCAAGTTCTGCCTGTCTGCGAAGCAGCGCCCATACCCGACGATAACCATACGTTGGCAGCTCTCCGATAACATGGTGTATACGGAGAAGCACATCCGTATCATCAGTGTGACGACTGCGGCGGCCATCCATCCCAGTCCATCGGTTCGTCTGAGAATGACGTGCAACTGCGCACGCGACACCCGGAGGACAACGGCTGACTAAGCTTACTCCCCCATTCCCCGGGCAATAAGGGCGCGTGCGCTATCCACTTTTTTGCCCGTCCATATTCAACGGCTTCTTTGAGGAGTTCATTTTCCATCGTTTTCTTGCCGAGCAGGCGCTGGAGTTCTTTAATCTGCTTCATGGCGGCAGCAAGTTCAGAGGCAGGAACAACCTGTTCTCCGGCGGCGACAGCAGTAAGACTTCCTTCCTGGTATTGCTTACGCCAGAGAAATAACTGGCTGGCTGCTACACCATGTTGCCGGGCAACGAGGGAGACCGTCATCCCCGGTTCAAAGCTCTGCTGAACAATTGCGATCTTTTCCTGTGTGGTACGCCGTCTGCGTTTCTCCGGCCCTAAGACATCAATCATCTGTTCTCCAATGACTAGTCTAAAAACTAGTATTAAGACTATCACTTATTTAAGTGATATTGGTTGTCTGGAGATTCAGGGGGCCAGTCTACTCAATCTCTCCCTCTCTTCGTTACTTTCGACGTTTCTATACATTTCCATCCAGAAGAAATAATTCCAACTCCAATGGCGGTGCGGTCTTGCTCGTCAAGGCTTATATGGATGAGACCACAAATCCAATTTCTAGTTTTGCTAATAAGGTCATCGGTTCACTGCCTGTTTTTGGTCTCATAGCCAGAATTGTCAATGAGGAAGGTGGTGTTGGAGGCGATTTTATTGATTTTGCGGAGTTCAGGAGGCGAGTCGGTAACAAGTGTTCCATTAATGATTCAAGAGCTTTTTATGAATTTCGAGATCGACGTGGCAAGGTAATTTTTACTTGCAATCAAGTGACTTGGTTTTATCTATAGATTATTGACCTTGATTTTCCTTGCCTTATTGATAGACAGGGGATCCTCTGTATGTGCTACTGTGTTGTTGGTTAGCTGCAGTAGGAGCTGGTTTACTCAAATCTGAGGAAATTTTGGAAGGGGTAGCAAGGCTTAGTTTAGCAAATGATATTGAATTTGAAGAACAAAACTTCATCGCAATGATGAATGAAGCAAGGGAG</genome_strand>
        <mrna_strand>TCCACTCTCCTTCTTCTTCCTCCTCCATCTACT................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTAACTCAATCTCTCCCTCTCTTCGTTACTTTCGACGTTTCTATACATTTCCATCCAGAAGAAATAATTCCAACTCCAATGGCGGTGCGGTCTTGCTCGTCAAGGCTTATATGGATGAGACCACAAATCCAATTTCTAGTTTTGCTAATAAGGTCATCGGTTCACTGCCTGTTTTTGGTCTCATAGCCAGAATTGTCAATGAGGAAGGTGGTGTTGGAGGCGATTTTATTGATTTTGCGGAGTTCAGGAGGCGAGTCGGTAACAAGTGTTCCATTAATGATTCAAGAGCTTTTTATGAATTTCGAGATCGACGTGGCAAG.............................................................................ACAGGGGATCCTCTGTATGTGCTACTGTGTTGTTGGTTAGCTGCAGTAGGAGCTGGTTTACTCAAATCTGAGGAAATTTTGGAAGGGGTAGCAAGGCTTAGTTTAGCAAATGATATTGAATTTGAAGAACAAAACTTCATCGCAATGATGAATGAAGCAAGGGAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0236E02-u8qcS/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E268185" ref_strand="+" ref_description="SGN-E268185 [cLEI-15-P5]">
      <seq>gctcctccatctactgtaacctcaatctctccctctcttcgttactttcgacgtttctatacatttccatccagaagaaataattccaactccaatggcggtgcggtcttgctcgtcaaggcttatatggatgagaccacaaatccaatttctagttttgctaataaggtcatcggttcactgcctgtttttggtctcatagccagaattgtcaatgaggaaggtggtgttggaggcgattttattgattttgcggagttcaagaggcgagtcggtaacaagtgttccattaatgattcaagagctttttatgaatttcgagatcgacgtggcaagacaggggatcctctgtatgtgctactgtgttgttggttagctgcagtaagagctggtttactcaaatctgaggaaattttggaaggggtagcaaggcttagtttagcaaatgatattgaatttgaagaacaaaacttcatcgcaatgatgaatgaagcaagggagaagcgatcaaag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0236E02-u8qcS/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0236E02.1" temp_strand="-" temp_description="C02HBa0236E02.1  AC215430.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0236E02 sequenced_by:kribb upload_account_name:korea">
        <position start="73736" stop="71217"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="73437" g_stop="73423" g_length="15"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="15" r_length="15" r_score="0.933"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="73422" i_stop="72080" i_length="1343">
            <donor d_prob="0.962" d_score="0.00"/>
            <acceptor a_prob="0.000" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="72079" g_stop="71759" g_length="321"/>
          <reference_exon_boundary r_type="cDNA" r_start="16" r_stop="336" r_length="321" r_score="0.988"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="71758" i_stop="71682" i_length="77">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.925" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="71681" g_stop="71517" g_length="165"/>
          <reference_exon_boundary r_type="cDNA" r_start="337" r_stop="501" r_length="165" r_score="0.994"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0236E02.1" gen_strand="-" ref_id="SGN-E268185" ref_strand="+">
        <total_alignment_score>0.990</total_alignment_score>
        <cumulative_length_of_scored_exons>501</cumulative_length_of_scored_exons>
        <coverage percentage="0.977" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0236E02.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E268185" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="73437" e_stop="73423"/>
          <exon e_start="72079" e_stop="71759"/>
          <exon e_start="71681" e_stop="71517"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCTCCTCCATCTACTGTAACTCAATGGATTTGCCCCTATATTTCCAGACATCTGTTATCACTTAACCCATTACAAGCCCGCTGCCGCAGATATTCCCGTGGCGAGCGATAACCCAGCGCACTATGCGGATGCCATTCGTTATAATGCTCGAACGCCTCTGCAAGGTTCTTTGCTGCCGTTAACCCGTCTGGTTTGGGCATGATACTGATGTAGTCACGCTTTATCGTTTTCACGAAGCTCTCTGCTATTCCGTTACTCTCCGGACTCCGCACCGCCGTGTTCTTCGGTTCAAGTCCCAACATCCGGGCGAACTGGCGTGTTTCATTAGCCCGGTAGCATGAACCATTATCCGTCAGCCACTCCACTGGAGACGACGGAAGATCGTTGCCGAAGCGGCGTTCCACCGCTCCCAGCATGACGTCCTGTACTGTTTCACTGTTGAAGCCGCCGGTAGTGACCGCCCAGTGCAGTGCCTCACGATCACAGCAGTCCAGCGCGAACGTGGACACGCAGTCTCTCTCCGTTATCACAGCAGAACTCGAACCCGTCAGAGCACCATCGCTGATTGCTTTCTTTCACGGCCACTCTGCCCTGTATGTGCCCGGTTTCGATGGCGGTACAGCAGGTTTTCGCTCAAGCAACAGCGCATTCTGGCGCATGATCCGGTAAACACGTTTGGCATTGATCGCAGGCATACCATCAAGTTCTGCCTGTCTGCGAAGCAGCGCCCATACCCGACGATAACCATACGTTGGCAGCTCTCCGATAACATGGTGTATACGGAGAAGCACATCCGTATCATCAGTGTGACGACTGCGGCGGCCATCCATCCCAGTCCATCGGTTCGTCTGAGAATGACGTGCAACTGCGCACGCGACACCCGGAGGACAACGGCTGACTAAGCTTACTCCCCCATTCCCCGGGCAATAAGGGCGCGTGCGCTATCCACTTTTTTGCCCGTCCATATTCAACGGCTTCTTTGAGGAGTTCATTTTCCATCGTTTTCTTGCCGAGCAGGCGCTGGAGTTCTTTAATCTGCTTCATGGCGGCAGCAAGTTCAGAGGCAGGAACAACCTGTTCTCCGGCGGCGACAGCAGTAAGACTTCCTTCCTGGTATTGCTTACGCCAGAGAAATAACTGGCTGGCTGCTACACCATGTTGCCGGGCAACGAGGGAGACCGTCATCCCCGGTTCAAAGCTCTGCTGAACAATTGCGATCTTTTCCTGTGTGGTACGCCGTCTGCGTTTCTCCGGCCCTAAGACATCAATCATCTGTTCTCCAATGACTAGTCTAAAAACTAGTATTAAGACTATCACTTATTTAAGTGATATTGGTTGTCTGGAGATTCAGGGGGCCAGTCTACTCAATCTCTCCCTCTCTTCGTTACTTTCGACGTTTCTATACATTTCCATCCAGAAGAAATAATTCCAACTCCAATGGCGGTGCGGTCTTGCTCGTCAAGGCTTATATGGATGAGACCACAAATCCAATTTCTAGTTTTGCTAATAAGGTCATCGGTTCACTGCCTGTTTTTGGTCTCATAGCCAGAATTGTCAATGAGGAAGGTGGTGTTGGAGGCGATTTTATTGATTTTGCGGAGTTCAGGAGGCGAGTCGGTAACAAGTGTTCCATTAATGATTCAAGAGCTTTTTATGAATTTCGAGATCGACGTGGCAAGGTAATTTTTACTTGCAATCAAGTGACTTGGTTTTATCTATAGATTATTGACCTTGATTTTCCTTGCCTTATTGATAGACAGGGGATCCTCTGTATGTGCTACTGTGTTGTTGGTTAGCTGCAGTAGGAGCTGGTTTACTCAAATCTGAGGAAATTTTGGAAGGGGTAGCAAGGCTTAGTTTAGCAAATGATATTGAATTTGAAGAACAAAACTTCATCGCAATGATGAATGAAGCAAGGGAG</genome_strand>
        <mrna_strand>GCTCCTCCATCTACT...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTAACCTCAATCTCTCCCTCTCTTCGTTACTTTCGACGTTTCTATACATTTCCATCCAGAAGAAATAATTCCAACTCCAATGGCGGTGCGGTCTTGCTCGTCAAGGCTTATATGGATGAGACCACAAATCCAATTTCTAGTTTTGCTAATAAGGTCATCGGTTCACTGCCTGTTTTTGGTCTCATAGCCAGAATTGTCAATGAGGAAGGTGGTGTTGGAGGCGATTTTATTGATTTTGCGGAGTTCAAGAGGCGAGTCGGTAACAAGTGTTCCATTAATGATTCAAGAGCTTTTTATGAATTTCGAGATCGACGTGGCAAG.............................................................................ACAGGGGATCCTCTGTATGTGCTACTGTGTTGTTGGTTAGCTGCAGTAAGAGCTGGTTTACTCAAATCTGAGGAAATTTTGGAAGGGGTAGCAAGGCTTAGTTTAGCAAATGATATTGAATTTGAAGAACAAAACTTCATCGCAATGATGAATGAAGCAAGGGAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0236E02-u8qcS/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E278134" ref_strand="+" ref_description="SGN-E278134 [cLER-4-N15]">
      <seq>taacactatgggggttgactcctctctccactctccttcttcttcctcctccatctactgtaactcaatctctccctctcttcgttactttcgacgtttctatacatttccatccagaagaaataattccaactccaatggcggtgcggtcttgctcgtcaaggcttatatggatgagaccacaaatccaatttctagttttgctaataaggtcatcggttcactgcctgtttttggtctcatagccagaattgtcaatgaggaaggtggtgttggaggcgattttattgattttgcggagttcaggaggcgagtcggtaacaagtgttccattaatgattcaagagctttttatgaatttcgagatcgacgtggcaagacaggggatcctctgtatgtgctactgtgttgttggttagctgcagtaggagctggtttactcaaatctgaggaaattttggaaggggtagcaaggcttagtttagcaaatgatattgaatttgaagaacaaaacttcatcgcaatgatgaatga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0236E02-u8qcS/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0236E02.1" temp_strand="-" temp_description="C02HBa0236E02.1  AC215430.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0236E02 sequenced_by:kribb upload_account_name:korea">
        <position start="73781" stop="71227"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="73481" g_stop="73423" g_length="59"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="59" r_length="59" r_score="0.966"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="73422" i_stop="72079" i_length="1344">
            <donor d_prob="0.962" d_score="0.96"/>
            <acceptor a_prob="0.000" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="72078" g_stop="71759" g_length="320"/>
          <reference_exon_boundary r_type="cDNA" r_start="60" r_stop="379" r_length="320" r_score="0.991"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="71758" i_stop="71682" i_length="77">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.925" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="71681" g_stop="71527" g_length="155"/>
          <reference_exon_boundary r_type="cDNA" r_start="380" r_stop="534" r_length="155" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0236E02.1" gen_strand="-" ref_id="SGN-E278134" ref_strand="+">
        <total_alignment_score>0.991</total_alignment_score>
        <cumulative_length_of_scored_exons>534</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0236E02.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E278134" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="73481" e_stop="73423"/>
          <exon e_start="72078" e_stop="71759"/>
          <exon e_start="71681" e_stop="71527"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TAACACTATGGTGGTTGTCTCCTCTCTCCACTCTCCTTCTTCTTCCTCCTCCATCTACTGTAACTCAATGGATTTGCCCCTATATTTCCAGACATCTGTTATCACTTAACCCATTACAAGCCCGCTGCCGCAGATATTCCCGTGGCGAGCGATAACCCAGCGCACTATGCGGATGCCATTCGTTATAATGCTCGAACGCCTCTGCAAGGTTCTTTGCTGCCGTTAACCCGTCTGGTTTGGGCATGATACTGATGTAGTCACGCTTTATCGTTTTCACGAAGCTCTCTGCTATTCCGTTACTCTCCGGACTCCGCACCGCCGTGTTCTTCGGTTCAAGTCCCAACATCCGGGCGAACTGGCGTGTTTCATTAGCCCGGTAGCATGAACCATTATCCGTCAGCCACTCCACTGGAGACGACGGAAGATCGTTGCCGAAGCGGCGTTCCACCGCTCCCAGCATGACGTCCTGTACTGTTTCACTGTTGAAGCCGCCGGTAGTGACCGCCCAGTGCAGTGCCTCACGATCACAGCAGTCCAGCGCGAACGTGGACACGCAGTCTCTCTCCGTTATCACAGCAGAACTCGAACCCGTCAGAGCACCATCGCTGATTGCTTTCTTTCACGGCCACTCTGCCCTGTATGTGCCCGGTTTCGATGGCGGTACAGCAGGTTTTCGCTCAAGCAACAGCGCATTCTGGCGCATGATCCGGTAAACACGTTTGGCATTGATCGCAGGCATACCATCAAGTTCTGCCTGTCTGCGAAGCAGCGCCCATACCCGACGATAACCATACGTTGGCAGCTCTCCGATAACATGGTGTATACGGAGAAGCACATCCGTATCATCAGTGTGACGACTGCGGCGGCCATCCATCCCAGTCCATCGGTTCGTCTGAGAATGACGTGCAACTGCGCACGCGACACCCGGAGGACAACGGCTGACTAAGCTTACTCCCCCATTCCCCGGGCAATAAGGGCGCGTGCGCTATCCACTTTTTTGCCCGTCCATATTCAACGGCTTCTTTGAGGAGTTCATTTTCCATCGTTTTCTTGCCGAGCAGGCGCTGGAGTTCTTTAATCTGCTTCATGGCGGCAGCAAGTTCAGAGGCAGGAACAACCTGTTCTCCGGCGGCGACAGCAGTAAGACTTCCTTCCTGGTATTGCTTACGCCAGAGAAATAACTGGCTGGCTGCTACACCATGTTGCCGGGCAACGAGGGAGACCGTCATCCCCGGTTCAAAGCTCTGCTGAACAATTGCGATCTTTTCCTGTGTGGTACGCCGTCTGCGTTTCTCCGGCCCTAAGACATCAATCATCTGTTCTCCAATGACTAGTCTAAAAACTAGTATTAAGACTATCACTTATTTAAGTGATATTGGTTGTCTGGAGATTCAGGGGGCCAGTCTACTCAATCTCTCCCTCTCTTCGTTACTTTCGACGTTTCTATACATTTCCATCCAGAAGAAATAATTCCAACTCCAATGGCGGTGCGGTCTTGCTCGTCAAGGCTTATATGGATGAGACCACAAATCCAATTTCTAGTTTTGCTAATAAGGTCATCGGTTCACTGCCTGTTTTTGGTCTCATAGCCAGAATTGTCAATGAGGAAGGTGGTGTTGGAGGCGATTTTATTGATTTTGCGGAGTTCAGGAGGCGAGTCGGTAACAAGTGTTCCATTAATGATTCAAGAGCTTTTTATGAATTTCGAGATCGACGTGGCAAGGTAATTTTTACTTGCAATCAAGTGACTTGGTTTTATCTATAGATTATTGACCTTGATTTTCCTTGCCTTATTGATAGACAGGGGATCCTCTGTATGTGCTACTGTGTTGTTGGTTAGCTGCAGTAGGAGCTGGTTTACTCAAATCTGAGGAAATTTTGGAAGGGGTAGCAAGGCTTAGTTTAGCAAATGATATTGAATTTGAAGAACAAAACTTCATCGCAATGATGAATGA</genome_strand>
        <mrna_strand>TAACACTATGGGGGTTGACTCCTCTCTCCACTCTCCTTCTTCTTCCTCCTCCATCTACT................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTAACTCAATCTCTCCCTCTCTTCGTTACTTTCGACGTTTCTATACATTTCCATCCAGAAGAAATAATTCCAACTCCAATGGCGGTGCGGTCTTGCTCGTCAAGGCTTATATGGATGAGACCACAAATCCAATTTCTAGTTTTGCTAATAAGGTCATCGGTTCACTGCCTGTTTTTGGTCTCATAGCCAGAATTGTCAATGAGGAAGGTGGTGTTGGAGGCGATTTTATTGATTTTGCGGAGTTCAGGAGGCGAGTCGGTAACAAGTGTTCCATTAATGATTCAAGAGCTTTTTATGAATTTCGAGATCGACGTGGCAAG.............................................................................ACAGGGGATCCTCTGTATGTGCTACTGTGTTGTTGGTTAGCTGCAGTAGGAGCTGGTTTACTCAAATCTGAGGAAATTTTGGAAGGGGTAGCAAGGCTTAGTTTAGCAAATGATATTGAATTTGAAGAACAAAACTTCATCGCAATGATGAATGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0236E02-u8qcS/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E551326" ref_strand="+" ref_description="SGN-E551326 [TUS-54-G22]">
      <seq>ctactgtaactcaatctctccctctcttcgttactttcgacgtttctatacatttccatccagaagaaataattccaactccaatggcggtgcggtcttgctcgtcaaggcttatatggatgagaccacaaatccaatttctagttttgctaataaggtcatcggttcactgcctgtttttggtctcatagccagaattgtcaatgaggaaggtggtgttggaggcgattttattgattttgcggagttcaggaggcgagtcggtaacaagtgttccattaatgattcaagagctttttatgaatttcgagatcgacgtggcaagacaggggatcctctgtatgtgctactgtgttgttggttagctgcagtaggagctggtttactcaaatctgaggaaattttggaaggggtagcaaggcttagtttagcaaatgatattgaatttgaagaacaaacttcatcgcaatgatg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0236E02-u8qcS/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0236E02.1" temp_strand="-" temp_description="C02HBa0236E02.1  AC215430.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0236E02 sequenced_by:kribb upload_account_name:korea">
        <position start="72382" stop="71232"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="72082" g_stop="71759" g_length="324"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="325" r_length="325" r_score="0.985"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="71758" i_stop="71682" i_length="77">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.925" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="71681" g_stop="71532" g_length="150"/>
          <reference_exon_boundary r_type="cDNA" r_start="326" r_stop="474" r_length="149" r_score="0.993"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0236E02.1" gen_strand="-" ref_id="SGN-E551326" ref_strand="+">
        <total_alignment_score>0.987</total_alignment_score>
        <cumulative_length_of_scored_exons>474</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0236E02.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E551326" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="72082" e_stop="71759"/>
          <exon e_start="71681" e_stop="71532"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCAGTCT-ACTCAATCTCTCCCTCTCTTCGTTACTTTCGACGTTTCTATACATTTCCATCCAGAAGAAATAATTCCAACTCCAATGGCGGTGCGGTCTTGCTCGTCAAGGCTTATATGGATGAGACCACAAATCCAATTTCTAGTTTTGCTAATAAGGTCATCGGTTCACTGCCTGTTTTTGGTCTCATAGCCAGAATTGTCAATGAGGAAGGTGGTGTTGGAGGCGATTTTATTGATTTTGCGGAGTTCAGGAGGCGAGTCGGTAACAAGTGTTCCATTAATGATTCAAGAGCTTTTTATGAATTTCGAGATCGACGTGGCAAGGTAATTTTTACTTGCAATCAAGTGACTTGGTTTTATCTATAGATTATTGACCTTGATTTTCCTTGCCTTATTGATAGACAGGGGATCCTCTGTATGTGCTACTGTGTTGTTGGTTAGCTGCAGTAGGAGCTGGTTTACTCAAATCTGAGGAAATTTTGGAAGGGGTAGCAAGGCTTAGTTTAGCAAATGATATTGAATTTGAAGAACAAAACTTCATCGCAATGATG</genome_strand>
        <mrna_strand>CTACTGTAACTCAATCTCTCCCTCTCTTCGTTACTTTCGACGTTTCTATACATTTCCATCCAGAAGAAATAATTCCAACTCCAATGGCGGTGCGGTCTTGCTCGTCAAGGCTTATATGGATGAGACCACAAATCCAATTTCTAGTTTTGCTAATAAGGTCATCGGTTCACTGCCTGTTTTTGGTCTCATAGCCAGAATTGTCAATGAGGAAGGTGGTGTTGGAGGCGATTTTATTGATTTTGCGGAGTTCAGGAGGCGAGTCGGTAACAAGTGTTCCATTAATGATTCAAGAGCTTTTTATGAATTTCGAGATCGACGTGGCAAG.............................................................................ACAGGGGATCCTCTGTATGTGCTACTGTGTTGTTGGTTAGCTGCAGTAGGAGCTGGTTTACTCAAATCTGAGGAAATTTTGGAAGGGGTAGCAAGGCTTAGTTTAGCAAATGATATTGAATTTGAAGAAC-AAACTTCATCGCAATGATG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0236E02-u8qcS/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E688683" ref_strand="+" ref_description="SGN-E688683 [t3_tus_54_G22]">
      <seq>ctactgtaactcaatctctccctctcttcgttactttcgacgtttctatacatttccatccagaagaaataattccaactccaatggcggtgcggtcttgctcgtcaaggcttatatggatgagaccacaaatccaatttctagttttgctaataaggtcatcggttcactgcctgtttttggtctcatagccagaattgtcaatgaggaaggtggtgttggaggcgattttattgattttgcggagttcaggaggcgagtcggtaacaagtgttccattaatgattcaagagctttttatgaatttcgagatcgacgtggcaagacaggggatcctctgtatgtgctactgtgttgttggttagctgcagtaggagctggtttactcaaatctgaggaaattttggaaggggtagcaaggcttagtttagcaaatgatattgaatttgaagaacaaacttcatcgcaatgatg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0236E02-u8qcS/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0236E02.1" temp_strand="-" temp_description="C02HBa0236E02.1  AC215430.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0236E02 sequenced_by:kribb upload_account_name:korea">
        <position start="72382" stop="71232"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="72082" g_stop="71759" g_length="324"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="325" r_length="325" r_score="0.985"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="71758" i_stop="71682" i_length="77">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.925" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="71681" g_stop="71532" g_length="150"/>
          <reference_exon_boundary r_type="cDNA" r_start="326" r_stop="474" r_length="149" r_score="0.993"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0236E02.1" gen_strand="-" ref_id="SGN-E688683" ref_strand="+">
        <total_alignment_score>0.987</total_alignment_score>
        <cumulative_length_of_scored_exons>474</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0236E02.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E688683" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="72082" e_stop="71759"/>
          <exon e_start="71681" e_stop="71532"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCAGTCT-ACTCAATCTCTCCCTCTCTTCGTTACTTTCGACGTTTCTATACATTTCCATCCAGAAGAAATAATTCCAACTCCAATGGCGGTGCGGTCTTGCTCGTCAAGGCTTATATGGATGAGACCACAAATCCAATTTCTAGTTTTGCTAATAAGGTCATCGGTTCACTGCCTGTTTTTGGTCTCATAGCCAGAATTGTCAATGAGGAAGGTGGTGTTGGAGGCGATTTTATTGATTTTGCGGAGTTCAGGAGGCGAGTCGGTAACAAGTGTTCCATTAATGATTCAAGAGCTTTTTATGAATTTCGAGATCGACGTGGCAAGGTAATTTTTACTTGCAATCAAGTGACTTGGTTTTATCTATAGATTATTGACCTTGATTTTCCTTGCCTTATTGATAGACAGGGGATCCTCTGTATGTGCTACTGTGTTGTTGGTTAGCTGCAGTAGGAGCTGGTTTACTCAAATCTGAGGAAATTTTGGAAGGGGTAGCAAGGCTTAGTTTAGCAAATGATATTGAATTTGAAGAACAAAACTTCATCGCAATGATG</genome_strand>
        <mrna_strand>CTACTGTAACTCAATCTCTCCCTCTCTTCGTTACTTTCGACGTTTCTATACATTTCCATCCAGAAGAAATAATTCCAACTCCAATGGCGGTGCGGTCTTGCTCGTCAAGGCTTATATGGATGAGACCACAAATCCAATTTCTAGTTTTGCTAATAAGGTCATCGGTTCACTGCCTGTTTTTGGTCTCATAGCCAGAATTGTCAATGAGGAAGGTGGTGTTGGAGGCGATTTTATTGATTTTGCGGAGTTCAGGAGGCGAGTCGGTAACAAGTGTTCCATTAATGATTCAAGAGCTTTTTATGAATTTCGAGATCGACGTGGCAAG.............................................................................ACAGGGGATCCTCTGTATGTGCTACTGTGTTGTTGGTTAGCTGCAGTAGGAGCTGGTTTACTCAAATCTGAGGAAATTTTGGAAGGGGTAGCAAGGCTTAGTTTAGCAAATGATATTGAATTTGAAGAAC-AAACTTCATCGCAATGATG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0236E02-u8qcS/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E263121" ref_strand="+" ref_description="SGN-E263121 [cLEG-62-C7]">
      <seq>tactgtaactcaatctctccctctcttcgttactttcgacgtttctatacatttccatccagaagaaataattccaactccaatggcggtgcggtcttgctcgtcaaggcttatatggatgagaccacaaatccaatttctagttttgctaataagggcatcggttcactgcctgtttttggtctcatagccagaattgtcaatgaagaaagtggtgttggaagcgattttattgattttgcggagttcaagaagcgaatcggtaacaagtgttccattaatgattcaagaactttttatgaatttccagaaccacctggcaagacaagggaacctctggatgtgctactggggtggtgggtaactgcaataagagctggtttactccaatctgaagaaattttggaaaggggagcaagggttaattt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0236E02-u8qcS/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0236E02.1" temp_strand="-" temp_description="C02HBa0236E02.1  AC215430.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0236E02 sequenced_by:kribb upload_account_name:korea">
        <position start="72380" stop="71455"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="72081" g_stop="71759" g_length="323"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="324" r_length="324" r_score="0.947"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="71758" i_stop="71682" i_length="77">
            <donor d_prob="0.999" d_score="0.90"/>
            <acceptor a_prob="0.925" a_score="0.80"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="71681" g_stop="71578" g_length="104"/>
          <reference_exon_boundary r_type="cDNA" r_start="325" r_stop="428" r_length="104" r_score="0.846"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0236E02.1" gen_strand="-" ref_id="SGN-E263121" ref_strand="+">
        <total_alignment_score>0.923</total_alignment_score>
        <cumulative_length_of_scored_exons>427</cumulative_length_of_scored_exons>
        <coverage percentage="0.998" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0236E02.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E263121" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="72081" e_stop="71759"/>
          <exon e_start="71681" e_stop="71578"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAGTCTA-CTCAATCTCTCCCTCTCTTCGTTACTTTCGACGTTTCTATACATTTCCATCCAGAAGAAATAATTCCAACTCCAATGGCGGTGCGGTCTTGCTCGTCAAGGCTTATATGGATGAGACCACAAATCCAATTTCTAGTTTTGCTAATAAGGTCATCGGTTCACTGCCTGTTTTTGGTCTCATAGCCAGAATTGTCAATGAGGAAGGTGGTGTTGGAGGCGATTTTATTGATTTTGCGGAGTTCAGGAGGCGAGTCGGTAACAAGTGTTCCATTAATGATTCAAGAGCTTTTTATGAATTTCGAGATCGACGTGGCAAGGTAATTTTTACTTGCAATCAAGTGACTTGGTTTTATCTATAGATTATTGACCTTGATTTTCCTTGCCTTATTGATAGACAGGGGATCCTCTGTATGTGCTACTGTGTTGTTGGTTAGCTGCAGTAGGAGCTGGTTTACTCAAATCTGAGGAAATTTTGGAAGGGGTAGCAAGGCTTAGTTT</genome_strand>
        <mrna_strand>TACTGTAACTCAATCTCTCCCTCTCTTCGTTACTTTCGACGTTTCTATACATTTCCATCCAGAAGAAATAATTCCAACTCCAATGGCGGTGCGGTCTTGCTCGTCAAGGCTTATATGGATGAGACCACAAATCCAATTTCTAGTTTTGCTAATAAGGGCATCGGTTCACTGCCTGTTTTTGGTCTCATAGCCAGAATTGTCAATGAAGAAAGTGGTGTTGGAAGCGATTTTATTGATTTTGCGGAGTTCAAGAAGCGAATCGGTAACAAGTGTTCCATTAATGATTCAAGAACTTTTTATGAATTTCCAGAACCACCTGGCAAG.............................................................................ACAAGGGAACCTCTGGATGTGCTACTGGGGTGGTGGGTAACTGCAATAAGAGCTGGTTTACTCCAATCTGAAGAAATTTTGGAAAGGGGAGCAAGGGTTAATTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0236E02-u8qcS/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E205441" ref_strand="+" ref_description="SGN-E205441 [cLEC-28-B20]">
      <seq>tgtctcctctctccactctccttgttcttcctcctccatgtactgtaactcaatctctccctctcttcgttactttcgacgtttctatacatttccatccagaagaaataattccaactccaatggcggtgcggtcttgctcgtcaaggcttatatggatgagaccacaaatccaatttctagttttgctaataaggtcatcggttcactgcctgtttttggtctcatagccagaattgtcaatgaggaaggtggtgttggaggcgattttattgattttgcggagttcatgaggcgagtcggtaacaagtgttccattaatgattcaagagctttttatgaatttcgagatcgacgtggcaagacaggggatcctctgtctgcgctactgtgttgttggttagctgcagtaggagctggtttactcaaatctgaggaaattntggaaggggtagcaaggc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0236E02-u8qcS/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0236E02.1" temp_strand="-" temp_description="C02HBa0236E02.1  AC215430.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0236E02 sequenced_by:kribb upload_account_name:korea">
        <position start="73766" stop="71285"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="73466" g_stop="73423" g_length="44"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="44" r_length="44" r_score="0.955"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="73422" i_stop="72079" i_length="1344">
            <donor d_prob="0.962" d_score="0.95"/>
            <acceptor a_prob="0.000" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="72078" g_stop="71759" g_length="320"/>
          <reference_exon_boundary r_type="cDNA" r_start="45" r_stop="364" r_length="320" r_score="0.988"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="71758" i_stop="71682" i_length="77">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.925" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="71681" g_stop="71585" g_length="97"/>
          <reference_exon_boundary r_type="cDNA" r_start="365" r_stop="461" r_length="97" r_score="0.969"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0236E02.1" gen_strand="-" ref_id="SGN-E205441" ref_strand="+">
        <total_alignment_score>0.983</total_alignment_score>
        <cumulative_length_of_scored_exons>461</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0236E02.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E205441" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="73466" e_stop="73423"/>
          <exon e_start="72078" e_stop="71759"/>
          <exon e_start="71681" e_stop="71585"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGTCTCCTCTCTCCACTCTCCTTCTTCTTCCTCCTCCATCTACTGTAACTCAATGGATTTGCCCCTATATTTCCAGACATCTGTTATCACTTAACCCATTACAAGCCCGCTGCCGCAGATATTCCCGTGGCGAGCGATAACCCAGCGCACTATGCGGATGCCATTCGTTATAATGCTCGAACGCCTCTGCAAGGTTCTTTGCTGCCGTTAACCCGTCTGGTTTGGGCATGATACTGATGTAGTCACGCTTTATCGTTTTCACGAAGCTCTCTGCTATTCCGTTACTCTCCGGACTCCGCACCGCCGTGTTCTTCGGTTCAAGTCCCAACATCCGGGCGAACTGGCGTGTTTCATTAGCCCGGTAGCATGAACCATTATCCGTCAGCCACTCCACTGGAGACGACGGAAGATCGTTGCCGAAGCGGCGTTCCACCGCTCCCAGCATGACGTCCTGTACTGTTTCACTGTTGAAGCCGCCGGTAGTGACCGCCCAGTGCAGTGCCTCACGATCACAGCAGTCCAGCGCGAACGTGGACACGCAGTCTCTCTCCGTTATCACAGCAGAACTCGAACCCGTCAGAGCACCATCGCTGATTGCTTTCTTTCACGGCCACTCTGCCCTGTATGTGCCCGGTTTCGATGGCGGTACAGCAGGTTTTCGCTCAAGCAACAGCGCATTCTGGCGCATGATCCGGTAAACACGTTTGGCATTGATCGCAGGCATACCATCAAGTTCTGCCTGTCTGCGAAGCAGCGCCCATACCCGACGATAACCATACGTTGGCAGCTCTCCGATAACATGGTGTATACGGAGAAGCACATCCGTATCATCAGTGTGACGACTGCGGCGGCCATCCATCCCAGTCCATCGGTTCGTCTGAGAATGACGTGCAACTGCGCACGCGACACCCGGAGGACAACGGCTGACTAAGCTTACTCCCCCATTCCCCGGGCAATAAGGGCGCGTGCGCTATCCACTTTTTTGCCCGTCCATATTCAACGGCTTCTTTGAGGAGTTCATTTTCCATCGTTTTCTTGCCGAGCAGGCGCTGGAGTTCTTTAATCTGCTTCATGGCGGCAGCAAGTTCAGAGGCAGGAACAACCTGTTCTCCGGCGGCGACAGCAGTAAGACTTCCTTCCTGGTATTGCTTACGCCAGAGAAATAACTGGCTGGCTGCTACACCATGTTGCCGGGCAACGAGGGAGACCGTCATCCCCGGTTCAAAGCTCTGCTGAACAATTGCGATCTTTTCCTGTGTGGTACGCCGTCTGCGTTTCTCCGGCCCTAAGACATCAATCATCTGTTCTCCAATGACTAGTCTAAAAACTAGTATTAAGACTATCACTTATTTAAGTGATATTGGTTGTCTGGAGATTCAGGGGGCCAGTCTACTCAATCTCTCCCTCTCTTCGTTACTTTCGACGTTTCTATACATTTCCATCCAGAAGAAATAATTCCAACTCCAATGGCGGTGCGGTCTTGCTCGTCAAGGCTTATATGGATGAGACCACAAATCCAATTTCTAGTTTTGCTAATAAGGTCATCGGTTCACTGCCTGTTTTTGGTCTCATAGCCAGAATTGTCAATGAGGAAGGTGGTGTTGGAGGCGATTTTATTGATTTTGCGGAGTTCAGGAGGCGAGTCGGTAACAAGTGTTCCATTAATGATTCAAGAGCTTTTTATGAATTTCGAGATCGACGTGGCAAGGTAATTTTTACTTGCAATCAAGTGACTTGGTTTTATCTATAGATTATTGACCTTGATTTTCCTTGCCTTATTGATAGACAGGGGATCCTCTGTATGTGCTACTGTGTTGTTGGTTAGCTGCAGTAGGAGCTGGTTTACTCAAATCTGAGGAAATTTTGGAAGGGGTAGCAAGGC</genome_strand>
        <mrna_strand>TGTCTCCTCTCTCCACTCTCCTTGTTCTTCCTCCTCCATGTACT................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTAACTCAATCTCTCCCTCTCTTCGTTACTTTCGACGTTTCTATACATTTCCATCCAGAAGAAATAATTCCAACTCCAATGGCGGTGCGGTCTTGCTCGTCAAGGCTTATATGGATGAGACCACAAATCCAATTTCTAGTTTTGCTAATAAGGTCATCGGTTCACTGCCTGTTTTTGGTCTCATAGCCAGAATTGTCAATGAGGAAGGTGGTGTTGGAGGCGATTTTATTGATTTTGCGGAGTTCATGAGGCGAGTCGGTAACAAGTGTTCCATTAATGATTCAAGAGCTTTTTATGAATTTCGAGATCGACGTGGCAAG.............................................................................ACAGGGGATCCTCTGTCTGCGCTACTGTGTTGTTGGTTAGCTGCAGTAGGAGCTGGTTTACTCAAATCTGAGGAAATTNTGGAAGGGGTAGCAAGGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0236E02-u8qcS/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E473654" ref_strand="+" ref_description="SGN-E473654 [cSTB-32-H12]">
      <seq>caatatcaaaacaaagattgaacgtcccaccacatgtaacactatggtggttgtctcctctctccactctccttcttcttcttcctcctccatctactgcaactcaatctctccctctcttcgttactttcgacgtttctatacatttccatccacacggaataataataaagcagcttccaactccaatggcggtgccgtcttactcgtcaaggcttatatggatgagaccacaaatccaatttccagtttcgctaataaggtcatcggttcactccctgtttttggtctcatagccagaattgtgaatgaggaaggtggtgttggtggtgattttattgattttgctgagttcaggaggcgagtcggtaacaagtgctccattaatgattcaagagctttttatgaatttcgagatcgacgtggcaagacaggggatcctctgtatgtgctactgtgctgttggttagctgctgtaggagctggtttactcaaatctgaggaaattttggaaggg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0236E02-u8qcS/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0236E02.1" temp_strand="-" temp_description="C02HBa0236E02.1  AC215430.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0236E02 sequenced_by:kribb upload_account_name:korea">
        <position start="73815" stop="71295"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="73516" g_stop="73423" g_length="94"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="98" r_length="98" r_score="0.904"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="73422" i_stop="72079" i_length="1344">
            <donor d_prob="0.962" d_score="0.87"/>
            <acceptor a_prob="0.000" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="72078" g_stop="71759" g_length="320"/>
          <reference_exon_boundary r_type="cDNA" r_start="99" r_stop="430" r_length="332" r_score="0.884"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="71758" i_stop="71682" i_length="77">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.925" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="71681" g_stop="71595" g_length="87"/>
          <reference_exon_boundary r_type="cDNA" r_start="431" r_stop="517" r_length="87" r_score="0.977"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0236E02.1" gen_strand="-" ref_id="SGN-E473654" ref_strand="+">
        <total_alignment_score>0.904</total_alignment_score>
        <cumulative_length_of_scored_exons>501</cumulative_length_of_scored_exons>
        <coverage percentage="0.969" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0236E02.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E473654" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="73516" e_stop="73423"/>
          <exon e_start="72078" e_stop="71759"/>
          <exon e_start="71681" e_stop="71595"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAATATCAAAACAAAGATTGAACGT-CCACCACATGTAACACTATGGTGGTTGTCTCCTCTCTCCACTCT-C--CTTCTTCTTCCTCCTCCATCTACTGTAACTCAATGGATTTGCCCCTATATTTCCAGACATCTGTTATCACTTAACCCATTACAAGCCCGCTGCCGCAGATATTCCCGTGGCGAGCGATAACCCAGCGCACTATGCGGATGCCATTCGTTATAATGCTCGAACGCCTCTGCAAGGTTCTTTGCTGCCGTTAACCCGTCTGGTTTGGGCATGATACTGATGTAGTCACGCTTTATCGTTTTCACGAAGCTCTCTGCTATTCCGTTACTCTCCGGACTCCGCACCGCCGTGTTCTTCGGTTCAAGTCCCAACATCCGGGCGAACTGGCGTGTTTCATTAGCCCGGTAGCATGAACCATTATCCGTCAGCCACTCCACTGGAGACGACGGAAGATCGTTGCCGAAGCGGCGTTCCACCGCTCCCAGCATGACGTCCTGTACTGTTTCACTGTTGAAGCCGCCGGTAGTGACCGCCCAGTGCAGTGCCTCACGATCACAGCAGTCCAGCGCGAACGTGGACACGCAGTCTCTCTCCGTTATCACAGCAGAACTCGAACCCGTCAGAGCACCATCGCTGATTGCTTTCTTTCACGGCCACTCTGCCCTGTATGTGCCCGGTTTCGATGGCGGTACAGCAGGTTTTCGCTCAAGCAACAGCGCATTCTGGCGCATGATCCGGTAAACACGTTTGGCATTGATCGCAGGCATACCATCAAGTTCTGCCTGTCTGCGAAGCAGCGCCCATACCCGACGATAACCATACGTTGGCAGCTCTCCGATAACATGGTGTATACGGAGAAGCACATCCGTATCATCAGTGTGACGACTGCGGCGGCCATCCATCCCAGTCCATCGGTTCGTCTGAGAATGACGTGCAACTGCGCACGCGACACCCGGAGGACAACGGCTGACTAAGCTTACTCCCCCATTCCCCGGGCAATAAGGGCGCGTGCGCTATCCACTTTTTTGCCCGTCCATATTCAACGGCTTCTTTGAGGAGTTCATTTTCCATCGTTTTCTTGCCGAGCAGGCGCTGGAGTTCTTTAATCTGCTTCATGGCGGCAGCAAGTTCAGAGGCAGGAACAACCTGTTCTCCGGCGGCGACAGCAGTAAGACTTCCTTCCTGGTATTGCTTACGCCAGAGAAATAACTGGCTGGCTGCTACACCATGTTGCCGGGCAACGAGGGAGACCGTCATCCCCGGTTCAAAGCTCTGCTGAACAATTGCGATCTTTTCCTGTGTGGTACGCCGTCTGCGTTTCTCCGGCCCTAAGACATCAATCATCTGTTCTCCAATGACTAGTCTAAAAACTAGTATTAAGACTATCACTTATTTAAGTGATATTGGTTGTCTGGAGATTCAGGGGGCCAGTCTACTCAATCTCTCCCTCTCTTCGTTACTTTCGACGTTTCTATACATTTCCAT-C-CA--GAA-GA-AAT-AA-----TTCCAACTCCAATGGCGGTGCGGTCTTGCTCGTCAAGGCTTATATGGATGAGACCACAAATCCAATTTCTAGTTTTGCTAATAAGGTCATCGGTTCACTGCCTGTTTTTGGTCTCATAGCCAGAATTGTCAATGAGGAAGGTGGTGTTGGAGGCGATTTTATTGATTTTGCGGAGTTCAGGAGGCGAGTCGGTAACAAGTGTTCCATTAATGATTCAAGAGCTTTTTATGAATTTCGAGATCGACGTGGCAAGGTAATTTTTACTTGCAATCAAGTGACTTGGTTTTATCTATAGATTATTGACCTTGATTTTCCTTGCCTTATTGATAGACAGGGGATCCTCTGTATGTGCTACTGTGTTGTTGGTTAGCTGCAGTAGGAGCTGGTTTACTCAAATCTGAGGAAATTTTGGAAGGG</genome_strand>
        <mrna_strand>CAATATCAAAACAAAGATTGAACGTCCCACCACATGTAACACTATGGTGGTTGTCTCCTCTCTCCACTCTCCTTCTTCTTCTTCCTCCTCCATCTACT................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCAACTCAATCTCTCCCTCTCTTCGTTACTTTCGACGTTTCTATACATTTCCATCCACACGGAATAATAATAAAGCAGCTTCCAACTCCAATGGCGGTGCCGTCTTACTCGTCAAGGCTTATATGGATGAGACCACAAATCCAATTTCCAGTTTCGCTAATAAGGTCATCGGTTCACTCCCTGTTTTTGGTCTCATAGCCAGAATTGTGAATGAGGAAGGTGGTGTTGGTGGTGATTTTATTGATTTTGCTGAGTTCAGGAGGCGAGTCGGTAACAAGTGCTCCATTAATGATTCAAGAGCTTTTTATGAATTTCGAGATCGACGTGGCAAG.............................................................................ACAGGGGATCCTCTGTATGTGCTACTGTGCTGTTGGTTAGCTGCTGTAGGAGCTGGTTTACTCAAATCTGAGGAAATTTTGGAAGGG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0236E02-u8qcS/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E265567" ref_strand="+" ref_description="SGN-E265567 [cLEI-14-D12]">
      <seq>aaatatcaaaacaaagattgaacgtccaccacatgtaacactatggtggttgtctcctctctccactctccttcttcttcctcctccatctactgtaactcaatctctccctctcttcgttactttcgacgtttctatacatttccatccagaagaaataattccaactccaatggcggtgcggtcttgctcgtcaaggcttatatggatgagaccacaaatccaatttctagttttgctaataaggtcatcggttcactgcctgtttttggtctcatagccagaattgtcaatgaggaaggtggtgttggaggcgattttattgattttgcggagttcaggaggcgagtcggtaacaagtgttccattaatgattcaagagctttttatgaatttcgagatcgacgtggcaagacaggggatcctctgtatgtgctactgtgttgttggttagctgcagtaagagctggtttactcaaatct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0236E02-u8qcS/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0236E02.1" temp_strand="-" temp_description="C02HBa0236E02.1  AC215430.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0236E02 sequenced_by:kribb upload_account_name:korea">
        <position start="73816" stop="71313"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="73516" g_stop="73423" g_length="94"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="94" r_length="94" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="73422" i_stop="72080" i_length="1343">
            <donor d_prob="0.962" d_score="1.00"/>
            <acceptor a_prob="0.000" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="72079" g_stop="71759" g_length="321"/>
          <reference_exon_boundary r_type="cDNA" r_start="95" r_stop="414" r_length="320" r_score="0.994"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="71758" i_stop="71682" i_length="77">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.925" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="71681" g_stop="71613" g_length="69"/>
          <reference_exon_boundary r_type="cDNA" r_start="415" r_stop="483" r_length="69" r_score="0.986"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0236E02.1" gen_strand="-" ref_id="SGN-E265567" ref_strand="+">
        <total_alignment_score>0.994</total_alignment_score>
        <cumulative_length_of_scored_exons>484</cumulative_length_of_scored_exons>
        <coverage percentage="1.002" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0236E02.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E265567" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="73516" e_stop="73423"/>
          <exon e_start="72079" e_stop="71759"/>
          <exon e_start="71681" e_stop="71613"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAATATCAAAACAAAGATTGAACGTCCACCACATGTAACACTATGGTGGTTGTCTCCTCTCTCCACTCTCCTTCTTCTTCCTCCTCCATCTACTGTAACTCAATGGATTTGCCCCTATATTTCCAGACATCTGTTATCACTTAACCCATTACAAGCCCGCTGCCGCAGATATTCCCGTGGCGAGCGATAACCCAGCGCACTATGCGGATGCCATTCGTTATAATGCTCGAACGCCTCTGCAAGGTTCTTTGCTGCCGTTAACCCGTCTGGTTTGGGCATGATACTGATGTAGTCACGCTTTATCGTTTTCACGAAGCTCTCTGCTATTCCGTTACTCTCCGGACTCCGCACCGCCGTGTTCTTCGGTTCAAGTCCCAACATCCGGGCGAACTGGCGTGTTTCATTAGCCCGGTAGCATGAACCATTATCCGTCAGCCACTCCACTGGAGACGACGGAAGATCGTTGCCGAAGCGGCGTTCCACCGCTCCCAGCATGACGTCCTGTACTGTTTCACTGTTGAAGCCGCCGGTAGTGACCGCCCAGTGCAGTGCCTCACGATCACAGCAGTCCAGCGCGAACGTGGACACGCAGTCTCTCTCCGTTATCACAGCAGAACTCGAACCCGTCAGAGCACCATCGCTGATTGCTTTCTTTCACGGCCACTCTGCCCTGTATGTGCCCGGTTTCGATGGCGGTACAGCAGGTTTTCGCTCAAGCAACAGCGCATTCTGGCGCATGATCCGGTAAACACGTTTGGCATTGATCGCAGGCATACCATCAAGTTCTGCCTGTCTGCGAAGCAGCGCCCATACCCGACGATAACCATACGTTGGCAGCTCTCCGATAACATGGTGTATACGGAGAAGCACATCCGTATCATCAGTGTGACGACTGCGGCGGCCATCCATCCCAGTCCATCGGTTCGTCTGAGAATGACGTGCAACTGCGCACGCGACACCCGGAGGACAACGGCTGACTAAGCTTACTCCCCCATTCCCCGGGCAATAAGGGCGCGTGCGCTATCCACTTTTTTGCCCGTCCATATTCAACGGCTTCTTTGAGGAGTTCATTTTCCATCGTTTTCTTGCCGAGCAGGCGCTGGAGTTCTTTAATCTGCTTCATGGCGGCAGCAAGTTCAGAGGCAGGAACAACCTGTTCTCCGGCGGCGACAGCAGTAAGACTTCCTTCCTGGTATTGCTTACGCCAGAGAAATAACTGGCTGGCTGCTACACCATGTTGCCGGGCAACGAGGGAGACCGTCATCCCCGGTTCAAAGCTCTGCTGAACAATTGCGATCTTTTCCTGTGTGGTACGCCGTCTGCGTTTCTCCGGCCCTAAGACATCAATCATCTGTTCTCCAATGACTAGTCTAAAAACTAGTATTAAGACTATCACTTATTTAAGTGATATTGGTTGTCTGGAGATTCAGGGGGCCAGTCTACTCAATCTCTCCCTCTCTTCGTTACTTTCGACGTTTCTATACATTTCCATCCAGAAGAAATAATTCCAACTCCAATGGCGGTGCGGTCTTGCTCGTCAAGGCTTATATGGATGAGACCACAAATCCAATTTCTAGTTTTGCTAATAAGGTCATCGGTTCACTGCCTGTTTTTGGTCTCATAGCCAGAATTGTCAATGAGGAAGGTGGTGTTGGAGGCGATTTTATTGATTTTGCGGAGTTCAGGAGGCGAGTCGGTAACAAGTGTTCCATTAATGATTCAAGAGCTTTTTATGAATTTCGAGATCGACGTGGCAAGGTAATTTTTACTTGCAATCAAGTGACTTGGTTTTATCTATAGATTATTGACCTTGATTTTCCTTGCCTTATTGATAGACAGGGGATCCTCTGTATGTGCTACTGTGTTGTTGGTTAGCTGCAGTAGGAGCTGGTTTACTCAAATCT</genome_strand>
        <mrna_strand>AAATATCAAAACAAAGATTGAACGTCCACCACATGTAACACTATGGTGGTTGTCTCCTCTCTCCACTCTCCTTCTTCTTCCTCCTCCATCTACT...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GT-AACTCAATCTCTCCCTCTCTTCGTTACTTTCGACGTTTCTATACATTTCCATCCAGAAGAAATAATTCCAACTCCAATGGCGGTGCGGTCTTGCTCGTCAAGGCTTATATGGATGAGACCACAAATCCAATTTCTAGTTTTGCTAATAAGGTCATCGGTTCACTGCCTGTTTTTGGTCTCATAGCCAGAATTGTCAATGAGGAAGGTGGTGTTGGAGGCGATTTTATTGATTTTGCGGAGTTCAGGAGGCGAGTCGGTAACAAGTGTTCCATTAATGATTCAAGAGCTTTTTATGAATTTCGAGATCGACGTGGCAAG.............................................................................ACAGGGGATCCTCTGTATGTGCTACTGTGTTGTTGGTTAGCTGCAGTAAGAGCTGGTTTACTCAAATCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0236E02-u8qcS/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E344756" ref_strand="+" ref_description="SGN-E344756 [cTOF-21-J13]">
      <seq>gtggttgtctcctctctccactctccttcttcttcctcctccatctactgtaactcaatctctccctctcttcgttactttcgacgtttctatacatttccatccagaagaaataattccaactccaatggcggtgcggtcttgctcgtcaaggcttatatggatgagaccacaaatccaatttctagttttgctaataaggtcatcggttcactgcctgtttttggtctcatagccagaattgtcaatgaggaaggtggtgttggaggcgattttattgattttgcggagttcaggaggcgagtcggtaacaagtgttccattaatgattcaagagctttttatgaatttcgagatcgacgtggcaagacaggggatcctctgtatgtgctactgtgttgttggttagct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0236E02-u8qcS/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0236E02.1" temp_strand="-" temp_description="C02HBa0236E02.1  AC215430.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0236E02 sequenced_by:kribb upload_account_name:korea">
        <position start="73771" stop="71340"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="73471" g_stop="73423" g_length="49"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="49" r_length="49" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="73422" i_stop="72079" i_length="1344">
            <donor d_prob="0.962" d_score="1.00"/>
            <acceptor a_prob="0.000" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="72078" g_stop="71759" g_length="320"/>
          <reference_exon_boundary r_type="cDNA" r_start="50" r_stop="369" r_length="320" r_score="0.991"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="71758" i_stop="71682" i_length="77">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.925" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="71681" g_stop="71640" g_length="42"/>
          <reference_exon_boundary r_type="cDNA" r_start="370" r_stop="411" r_length="42" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0236E02.1" gen_strand="-" ref_id="SGN-E344756" ref_strand="+">
        <total_alignment_score>0.991</total_alignment_score>
        <cumulative_length_of_scored_exons>411</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0236E02.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E344756" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="73471" e_stop="73423"/>
          <exon e_start="72078" e_stop="71759"/>
          <exon e_start="71681" e_stop="71640"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTGGTTGTCTCCTCTCTCCACTCTCCTTCTTCTTCCTCCTCCATCTACTGTAACTCAATGGATTTGCCCCTATATTTCCAGACATCTGTTATCACTTAACCCATTACAAGCCCGCTGCCGCAGATATTCCCGTGGCGAGCGATAACCCAGCGCACTATGCGGATGCCATTCGTTATAATGCTCGAACGCCTCTGCAAGGTTCTTTGCTGCCGTTAACCCGTCTGGTTTGGGCATGATACTGATGTAGTCACGCTTTATCGTTTTCACGAAGCTCTCTGCTATTCCGTTACTCTCCGGACTCCGCACCGCCGTGTTCTTCGGTTCAAGTCCCAACATCCGGGCGAACTGGCGTGTTTCATTAGCCCGGTAGCATGAACCATTATCCGTCAGCCACTCCACTGGAGACGACGGAAGATCGTTGCCGAAGCGGCGTTCCACCGCTCCCAGCATGACGTCCTGTACTGTTTCACTGTTGAAGCCGCCGGTAGTGACCGCCCAGTGCAGTGCCTCACGATCACAGCAGTCCAGCGCGAACGTGGACACGCAGTCTCTCTCCGTTATCACAGCAGAACTCGAACCCGTCAGAGCACCATCGCTGATTGCTTTCTTTCACGGCCACTCTGCCCTGTATGTGCCCGGTTTCGATGGCGGTACAGCAGGTTTTCGCTCAAGCAACAGCGCATTCTGGCGCATGATCCGGTAAACACGTTTGGCATTGATCGCAGGCATACCATCAAGTTCTGCCTGTCTGCGAAGCAGCGCCCATACCCGACGATAACCATACGTTGGCAGCTCTCCGATAACATGGTGTATACGGAGAAGCACATCCGTATCATCAGTGTGACGACTGCGGCGGCCATCCATCCCAGTCCATCGGTTCGTCTGAGAATGACGTGCAACTGCGCACGCGACACCCGGAGGACAACGGCTGACTAAGCTTACTCCCCCATTCCCCGGGCAATAAGGGCGCGTGCGCTATCCACTTTTTTGCCCGTCCATATTCAACGGCTTCTTTGAGGAGTTCATTTTCCATCGTTTTCTTGCCGAGCAGGCGCTGGAGTTCTTTAATCTGCTTCATGGCGGCAGCAAGTTCAGAGGCAGGAACAACCTGTTCTCCGGCGGCGACAGCAGTAAGACTTCCTTCCTGGTATTGCTTACGCCAGAGAAATAACTGGCTGGCTGCTACACCATGTTGCCGGGCAACGAGGGAGACCGTCATCCCCGGTTCAAAGCTCTGCTGAACAATTGCGATCTTTTCCTGTGTGGTACGCCGTCTGCGTTTCTCCGGCCCTAAGACATCAATCATCTGTTCTCCAATGACTAGTCTAAAAACTAGTATTAAGACTATCACTTATTTAAGTGATATTGGTTGTCTGGAGATTCAGGGGGCCAGTCTACTCAATCTCTCCCTCTCTTCGTTACTTTCGACGTTTCTATACATTTCCATCCAGAAGAAATAATTCCAACTCCAATGGCGGTGCGGTCTTGCTCGTCAAGGCTTATATGGATGAGACCACAAATCCAATTTCTAGTTTTGCTAATAAGGTCATCGGTTCACTGCCTGTTTTTGGTCTCATAGCCAGAATTGTCAATGAGGAAGGTGGTGTTGGAGGCGATTTTATTGATTTTGCGGAGTTCAGGAGGCGAGTCGGTAACAAGTGTTCCATTAATGATTCAAGAGCTTTTTATGAATTTCGAGATCGACGTGGCAAGGTAATTTTTACTTGCAATCAAGTGACTTGGTTTTATCTATAGATTATTGACCTTGATTTTCCTTGCCTTATTGATAGACAGGGGATCCTCTGTATGTGCTACTGTGTTGTTGGTTAGCT</genome_strand>
        <mrna_strand>GTGGTTGTCTCCTCTCTCCACTCTCCTTCTTCTTCCTCCTCCATCTACT................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTAACTCAATCTCTCCCTCTCTTCGTTACTTTCGACGTTTCTATACATTTCCATCCAGAAGAAATAATTCCAACTCCAATGGCGGTGCGGTCTTGCTCGTCAAGGCTTATATGGATGAGACCACAAATCCAATTTCTAGTTTTGCTAATAAGGTCATCGGTTCACTGCCTGTTTTTGGTCTCATAGCCAGAATTGTCAATGAGGAAGGTGGTGTTGGAGGCGATTTTATTGATTTTGCGGAGTTCAGGAGGCGAGTCGGTAACAAGTGTTCCATTAATGATTCAAGAGCTTTTTATGAATTTCGAGATCGACGTGGCAAG.............................................................................ACAGGGGATCCTCTGTATGTGCTACTGTGTTGTTGGTTAGCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0236E02-u8qcS/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E292656" ref_strand="+" ref_description="SGN-E292656 [cLET-11-C22]">
      <seq>aacactatggtggttgtctcctctctccactctccttcttcttcctcctccatctactgtaactcaatctctccctctcttcgttactttcgacgtttctatacatttccatccagaagaaataattccaactccaatggcggtgcggtcttgctcgtcaaggcttatatggatgagaccacaaatccaatttctagttttgctaataaggtcatcggttcactgcctgtttttggtctcatagccagaattgtcaatgaagaaggtggtgttggaggcgattttattgattttgcggagttcaagaggcgagtcggtaacaagtgttccattaatgattcaagagctttttatgaatttcgagatcgacgtggcaagacagggg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0236E02-u8qcS/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0236E02.1" temp_strand="-" temp_description="C02HBa0236E02.1  AC215430.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0236E02 sequenced_by:kribb upload_account_name:korea">
        <position start="73780" stop="71459"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="73480" g_stop="73423" g_length="58"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="58" r_length="58" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="73422" i_stop="72079" i_length="1344">
            <donor d_prob="0.962" d_score="1.00"/>
            <acceptor a_prob="0.000" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="72078" g_stop="71759" g_length="320"/>
          <reference_exon_boundary r_type="cDNA" r_start="59" r_stop="378" r_length="320" r_score="0.984"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="71758" i_stop="71682" i_length="77">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.925" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="71681" g_stop="71675" g_length="7"/>
          <reference_exon_boundary r_type="cDNA" r_start="379" r_stop="385" r_length="7" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0236E02.1" gen_strand="-" ref_id="SGN-E292656" ref_strand="+">
        <total_alignment_score>0.987</total_alignment_score>
        <cumulative_length_of_scored_exons>385</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0236E02.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E292656" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="73480" e_stop="73423"/>
          <exon e_start="72078" e_stop="71759"/>
          <exon e_start="71681" e_stop="71675"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AACACTATGGTGGTTGTCTCCTCTCTCCACTCTCCTTCTTCTTCCTCCTCCATCTACTGTAACTCAATGGATTTGCCCCTATATTTCCAGACATCTGTTATCACTTAACCCATTACAAGCCCGCTGCCGCAGATATTCCCGTGGCGAGCGATAACCCAGCGCACTATGCGGATGCCATTCGTTATAATGCTCGAACGCCTCTGCAAGGTTCTTTGCTGCCGTTAACCCGTCTGGTTTGGGCATGATACTGATGTAGTCACGCTTTATCGTTTTCACGAAGCTCTCTGCTATTCCGTTACTCTCCGGACTCCGCACCGCCGTGTTCTTCGGTTCAAGTCCCAACATCCGGGCGAACTGGCGTGTTTCATTAGCCCGGTAGCATGAACCATTATCCGTCAGCCACTCCACTGGAGACGACGGAAGATCGTTGCCGAAGCGGCGTTCCACCGCTCCCAGCATGACGTCCTGTACTGTTTCACTGTTGAAGCCGCCGGTAGTGACCGCCCAGTGCAGTGCCTCACGATCACAGCAGTCCAGCGCGAACGTGGACACGCAGTCTCTCTCCGTTATCACAGCAGAACTCGAACCCGTCAGAGCACCATCGCTGATTGCTTTCTTTCACGGCCACTCTGCCCTGTATGTGCCCGGTTTCGATGGCGGTACAGCAGGTTTTCGCTCAAGCAACAGCGCATTCTGGCGCATGATCCGGTAAACACGTTTGGCATTGATCGCAGGCATACCATCAAGTTCTGCCTGTCTGCGAAGCAGCGCCCATACCCGACGATAACCATACGTTGGCAGCTCTCCGATAACATGGTGTATACGGAGAAGCACATCCGTATCATCAGTGTGACGACTGCGGCGGCCATCCATCCCAGTCCATCGGTTCGTCTGAGAATGACGTGCAACTGCGCACGCGACACCCGGAGGACAACGGCTGACTAAGCTTACTCCCCCATTCCCCGGGCAATAAGGGCGCGTGCGCTATCCACTTTTTTGCCCGTCCATATTCAACGGCTTCTTTGAGGAGTTCATTTTCCATCGTTTTCTTGCCGAGCAGGCGCTGGAGTTCTTTAATCTGCTTCATGGCGGCAGCAAGTTCAGAGGCAGGAACAACCTGTTCTCCGGCGGCGACAGCAGTAAGACTTCCTTCCTGGTATTGCTTACGCCAGAGAAATAACTGGCTGGCTGCTACACCATGTTGCCGGGCAACGAGGGAGACCGTCATCCCCGGTTCAAAGCTCTGCTGAACAATTGCGATCTTTTCCTGTGTGGTACGCCGTCTGCGTTTCTCCGGCCCTAAGACATCAATCATCTGTTCTCCAATGACTAGTCTAAAAACTAGTATTAAGACTATCACTTATTTAAGTGATATTGGTTGTCTGGAGATTCAGGGGGCCAGTCTACTCAATCTCTCCCTCTCTTCGTTACTTTCGACGTTTCTATACATTTCCATCCAGAAGAAATAATTCCAACTCCAATGGCGGTGCGGTCTTGCTCGTCAAGGCTTATATGGATGAGACCACAAATCCAATTTCTAGTTTTGCTAATAAGGTCATCGGTTCACTGCCTGTTTTTGGTCTCATAGCCAGAATTGTCAATGAGGAAGGTGGTGTTGGAGGCGATTTTATTGATTTTGCGGAGTTCAGGAGGCGAGTCGGTAACAAGTGTTCCATTAATGATTCAAGAGCTTTTTATGAATTTCGAGATCGACGTGGCAAGGTAATTTTTACTTGCAATCAAGTGACTTGGTTTTATCTATAGATTATTGACCTTGATTTTCCTTGCCTTATTGATAGACAGGGG</genome_strand>
        <mrna_strand>AACACTATGGTGGTTGTCTCCTCTCTCCACTCTCCTTCTTCTTCCTCCTCCATCTACT................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTAACTCAATCTCTCCCTCTCTTCGTTACTTTCGACGTTTCTATACATTTCCATCCAGAAGAAATAATTCCAACTCCAATGGCGGTGCGGTCTTGCTCGTCAAGGCTTATATGGATGAGACCACAAATCCAATTTCTAGTTTTGCTAATAAGGTCATCGGTTCACTGCCTGTTTTTGGTCTCATAGCCAGAATTGTCAATGAAGAAGGTGGTGTTGGAGGCGATTTTATTGATTTTGCGGAGTTCAAGAGGCGAGTCGGTAACAAGTGTTCCATTAATGATTCAAGAGCTTTTTATGAATTTCGAGATCGACGTGGCAAG.............................................................................ACAGGGG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0236E02-u8qcS/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E278518" ref_strand="-" ref_description="SGN-E278518 [cLEL-2-P15](-)">
      <seq>gcacgagcaaatatcaaaacaaagattgaacgtccaccacatgtaacactatggtggttgtctcctctctccactctccttcttcttcctcctccatctactgtaactcaatctctccctctcttcgttactttcgacgtttctatacatttccatccagaagaaataattccaactccaatggcggtgcggtcttgctcgtcaaggcttatatggatgagaccacaaatccaatttctagttttgctaataaggtcatcggttcactgcctgttttt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0236E02-u8qcS/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0236E02.1" temp_strand="-" temp_description="C02HBa0236E02.1  AC215430.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0236E02 sequenced_by:kribb upload_account_name:korea">
        <position start="73822" stop="71603"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="73524" g_stop="73423" g_length="102"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="102" r_length="102" r_score="0.961"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="73422" i_stop="72080" i_length="1343">
            <donor d_prob="0.962" d_score="1.00"/>
            <acceptor a_prob="0.000" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="72079" g_stop="71903" g_length="177"/>
          <reference_exon_boundary r_type="cDNA" r_start="103" r_stop="278" r_length="176" r_score="0.989"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0236E02.1" gen_strand="-" ref_id="SGN-E278518" ref_strand="-">
        <total_alignment_score>0.978</total_alignment_score>
        <cumulative_length_of_scored_exons>279</cumulative_length_of_scored_exons>
        <coverage percentage="1.004" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0236E02.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E278518" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="73524" e_stop="73423"/>
          <exon e_start="72079" e_stop="71903"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAGGGGCAAATATCAAAACAAAGATTGAACGTCCACCACATGTAACACTATGGTGGTTGTCTCCTCTCTCCACTCTCCTTCTTCTTCCTCCTCCATCTACTGTAACTCAATGGATTTGCCCCTATATTTCCAGACATCTGTTATCACTTAACCCATTACAAGCCCGCTGCCGCAGATATTCCCGTGGCGAGCGATAACCCAGCGCACTATGCGGATGCCATTCGTTATAATGCTCGAACGCCTCTGCAAGGTTCTTTGCTGCCGTTAACCCGTCTGGTTTGGGCATGATACTGATGTAGTCACGCTTTATCGTTTTCACGAAGCTCTCTGCTATTCCGTTACTCTCCGGACTCCGCACCGCCGTGTTCTTCGGTTCAAGTCCCAACATCCGGGCGAACTGGCGTGTTTCATTAGCCCGGTAGCATGAACCATTATCCGTCAGCCACTCCACTGGAGACGACGGAAGATCGTTGCCGAAGCGGCGTTCCACCGCTCCCAGCATGACGTCCTGTACTGTTTCACTGTTGAAGCCGCCGGTAGTGACCGCCCAGTGCAGTGCCTCACGATCACAGCAGTCCAGCGCGAACGTGGACACGCAGTCTCTCTCCGTTATCACAGCAGAACTCGAACCCGTCAGAGCACCATCGCTGATTGCTTTCTTTCACGGCCACTCTGCCCTGTATGTGCCCGGTTTCGATGGCGGTACAGCAGGTTTTCGCTCAAGCAACAGCGCATTCTGGCGCATGATCCGGTAAACACGTTTGGCATTGATCGCAGGCATACCATCAAGTTCTGCCTGTCTGCGAAGCAGCGCCCATACCCGACGATAACCATACGTTGGCAGCTCTCCGATAACATGGTGTATACGGAGAAGCACATCCGTATCATCAGTGTGACGACTGCGGCGGCCATCCATCCCAGTCCATCGGTTCGTCTGAGAATGACGTGCAACTGCGCACGCGACACCCGGAGGACAACGGCTGACTAAGCTTACTCCCCCATTCCCCGGGCAATAAGGGCGCGTGCGCTATCCACTTTTTTGCCCGTCCATATTCAACGGCTTCTTTGAGGAGTTCATTTTCCATCGTTTTCTTGCCGAGCAGGCGCTGGAGTTCTTTAATCTGCTTCATGGCGGCAGCAAGTTCAGAGGCAGGAACAACCTGTTCTCCGGCGGCGACAGCAGTAAGACTTCCTTCCTGGTATTGCTTACGCCAGAGAAATAACTGGCTGGCTGCTACACCATGTTGCCGGGCAACGAGGGAGACCGTCATCCCCGGTTCAAAGCTCTGCTGAACAATTGCGATCTTTTCCTGTGTGGTACGCCGTCTGCGTTTCTCCGGCCCTAAGACATCAATCATCTGTTCTCCAATGACTAGTCTAAAAACTAGTATTAAGACTATCACTTATTTAAGTGATATTGGTTGTCTGGAGATTCAGGGGGCCAGTCTACTCAATCTCTCCCTCTCTTCGTTACTTTCGACGTTTCTATACATTTCCATCCAGAAGAAATAATTCCAACTCCAATGGCGGTGCGGTCTTGCTCGTCAAGGCTTATATGGATGAGACCACAAATCCAATTTCTAGTTTTGCTAATAAGGTCATCGGTTCACTGCCTGTTTTT</genome_strand>
        <mrna_strand>GCACGAGCAAATATCAAAACAAAGATTGAACGTCCACCACATGTAACACTATGGTGGTTGTCTCCTCTCTCCACTCTCCTTCTTCTTCCTCCTCCATCTACT...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GT-AACTCAATCTCTCCCTCTCTTCGTTACTTTCGACGTTTCTATACATTTCCATCCAGAAGAAATAATTCCAACTCCAATGGCGGTGCGGTCTTGCTCGTCAAGGCTTATATGGATGAGACCACAAATCCAATTTCTAGTTTTGCTAATAAGGTCATCGGTTCACTGCCTGTTTTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0236E02-u8qcS/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E414043" ref_strand="+" ref_description="SGN-E414043 [STM-18-H18]">
      <seq>cgatatcttaaaaccccattgttagtggcgaatgctcactggcgcactgcctctctggccccaattcccttgcggacggcctgtgtcgcttgctgctgcagcaatagaacagaaattaaaataaagagactttggcggcactactatatcactactcacattctccttcccattttcgtgcaaattaaatatactcttcctcctactctactccagctgctctctctttctctctcctttcgacacctcaaaagagtggtgaagtagagagccaagggtgagtatgggagctttttcaaatgaagaactcagtttctcttccaatttcaacttcgcttcctctcaagatctcagattctctaagcaaatccatgacaacgttcacggcaacatctacattgatccgctctacttgaagttcattgacacagaacaatttcaaaggcttcgtgatcttaaacaactaggtgtggcacacatggtttacccaggtgcagtgcattctagatttgagcattcccttggagtgtattggcttgccaatgaagctgtccataagcttaaaacccaccaaggtatggagctttgaattgatcactttgatatacaaacagtgaaacttgcangtcttctacatgatatcggacatggac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0236E02-u8qcS/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0236E02.1" temp_strand="+" temp_description="C02HBa0236E02.1  AC215430.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0236E02 sequenced_by:kribb upload_account_name:korea">
        <position start="73803" stop="77404"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="74112" g_stop="74375" g_length="264"/>
          <reference_exon_boundary r_type="cDNA" r_start="26" r_stop="254" r_length="229" r_score="0.837"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="74376" i_stop="74466" i_length="91">
            <donor d_prob="0.999" d_score="0.86"/>
            <acceptor a_prob="1.000" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="74467" g_stop="74619" g_length="153"/>
          <reference_exon_boundary r_type="cDNA" r_start="255" r_stop="406" r_length="152" r_score="0.961"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="74620" i_stop="75586" i_length="967">
            <donor d_prob="0.998" d_score="0.96"/>
            <acceptor a_prob="0.915" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="75587" g_stop="75624" g_length="38"/>
          <reference_exon_boundary r_type="cDNA" r_start="407" r_stop="444" r_length="38" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="75625" i_stop="75858" i_length="234">
            <donor d_prob="1.000" d_score="0.00"/>
            <acceptor a_prob="0.964" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="75859" g_stop="75881" g_length="23"/>
          <reference_exon_boundary r_type="cDNA" r_start="445" r_stop="467" r_length="23" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="75882" i_stop="76746" i_length="865">
            <donor d_prob="0.991" d_score="0.00"/>
            <acceptor a_prob="0.908" a_score="0.92"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="76747" g_stop="76853" g_length="107"/>
          <reference_exon_boundary r_type="cDNA" r_start="468" r_stop="574" r_length="107" r_score="0.963"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="76854" i_stop="76939" i_length="86">
            <donor d_prob="0.864" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="76940" g_stop="76991" g_length="52"/>
          <reference_exon_boundary r_type="cDNA" r_start="575" r_stop="626" r_length="52" r_score="0.962"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="76992" i_stop="77077" i_length="86">
            <donor d_prob="0.983" d_score="0.96"/>
            <acceptor a_prob="0.938" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="77078" g_stop="77104" g_length="27"/>
          <reference_exon_boundary r_type="cDNA" r_start="627" r_stop="653" r_length="27" r_score="0.963"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0236E02.1" gen_strand="+" ref_id="SGN-E414043" ref_strand="+">
        <total_alignment_score>0.905</total_alignment_score>
        <cumulative_length_of_scored_exons>664</cumulative_length_of_scored_exons>
        <coverage percentage="1.017" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0236E02.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E414043" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="74112" e_stop="74375"/>
          <exon e_start="74467" e_stop="74619"/>
          <exon e_start="75587" e_stop="75624"/>
          <exon e_start="75859" e_stop="75881"/>
          <exon e_start="76747" e_stop="76853"/>
          <exon e_start="76940" e_stop="76991"/>
          <exon e_start="77078" e_stop="77104"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGGCGAATGTTCACTGGCGCACTGCCTATCTGGCCCCAATTCCCTAGCGGACGGCCTGTGTCGCTTGCTGCTGCAGCAATAGAACAGAAATTAAAAAAACGAGACATTTGATAATAGTAATTGAAATAAAGAGACTTTGACGGCACTACTATATCACTACTCACATTCTCCTTCCCATTTTCGTGCAAATCAAATATATTCTTCCTCCTACTCTACGCCAGCTGCTCTCCTCTCTCTTTCTCTCTCCTTTCGGCACCTCAAAAGGTATGTAAACGCGTACGCAATTACTCAACCGTTACCAATATTAGGTTTATTCATTTTGCAATTTTTCTGTTGTTTTCTCTGTGCTGTGTAGAGTGGTGAAGTAGAGAGCCCAAGGGTGAGTATGGGAGCTTTTTCAAATGAAGAACTTAGTTTCTCTTCCAATTTCGACTTCGCTTCCTCTCAGGATCTCAGATTCTCTAAGCAAATCCATGACAACGTTCACGGCAACATCTACATCGACCCGGTATGTTGCTGTCTCTCACTCTCTGCTGGCTAGTTAACTTTCTACATTTCTGTACATGCTTTGCTTATACCTGCACTGTTTGAATTTATAGGTAGTTAGTTTTTCTTTTGTTTTGGTTCTAAGAGCAATCACAAATGTGTATGCTACACTAGTTTTCTGTGCTATCTAATAGCCAAAAGTGTACTACTATTTTAAAGGAAATTGATAACTGTCAATGAGATAAATGAGAATTCAGAGCTATTTTAAGTTGCACTTCATACATTTTTATTATCCACAGTTTTCTATGGGTAAGTCAGTGCCGAAATTGTACTCGCAAATTAGCCAAAATTGTTAACCGTCAGACTGAATAAATGAGTTCAAAACTATTTTGAATATCAATTCATAAATTTTTGTTATCCACAATTTTCTTAAAATTTTTCAACAAATAAAAAAAAAGTTATCTAGAATGCTTGTGACTTCCAATGTTCAAAGAAAAAAGTTATCTAGAACGCTTGTGCCAAAATTTTGATTTTGTTTCATTTAATGAAACATTAGTGACCATGTGACCATAACAATTAACAAGAGAAGATGATTTTTTCTTCATTCATGATTTATTCGAGAAGCATATAAGGTCAAAATTCATAAGTTTGTTTTGCTGGTAAGAATGGATCGATCTTAAAAGAATGATAGCAACAAAGTGTTTTCCCACACTGTCCTTGGTTAACCTGTGACACAATCCTCTTTCAGCTTTCAGGCTAAAACATGTATTTTATCCAATAGATCAATGAGTTGTTATTCGCCCGTATTTATTTATTAGTATGTGATTGTTTACCAGGCAAGAGAGACACTGGGGTGTGGAGGTTACTGTTTTCTCATTGTGATATCAGATCTACACTCTTATTTTCACTATTCTTATACATTTTCTTTAACTTCTTATTGAGAGCTTTGTGCAAACTACTGGAAGTTTATTCTTTTCTGAACTTTGCAGCTCTACTTGAAGTTCATTGACACAGAACAATTTCAAAGGCAAGTTTCCTTATCATCTACTTCTAGTAGTGTAGTATTAGTGGTAGATCTCAGTTTATTGCATCCCTACTATAAATCTATGTACTTTTCGAGTATATGTTTTCATATTGGCTGCAATTTGCCTATGACCTGATAGTCATCTTTTATTTTCTTTTATTTTCGTTTGTATGTTCAACACTTTATCATGAGAGCTTTACTAGAATTATTGAACTGTTTTTTTCTTTTGTTTTCCAGGCTTCGTGATCTTAAACAACTAGGTAAGTTACTATCCTTGTTCCCTATTTGCATACCTGGTCGCAAGCTTGTTTATGCTAGAACATCAAATTTAGCCTTGTGATTCAAAATGGGATATGAAGAAGTTTTCTTATCTATCATCTACGTGTCCGCTGAAATGTGGCATTTAGTTCTTTCATATTGCAAAATTATTACTAGTAAAATGTGGGATGACATAAAAGATGTAACTAACCTGTATTTTATTTGTCTTAATGTGAGTTGTTTTGGTTATCAAAACTATGATAAAATTGATAACTATCTTTGCCTCTTAAATATGTTCTGACATTATCTGCAACTTTCAGCTTCACTTTGTGATTAGCGGTGACACTTGAACGTATAAATAGTCTGTTTCAACTTCAGTGGTATCTAAATTGTGGTTGCATTGGTGACTGTCGTCGGATCCTTGTAAGGTCTTACGATAATTGCAAAGATATCTTGTTTCTTAGTGTCCTATGAAGACATATCTATATAGGTTATTCAAATTCTGGATATTCGTGTAAATGATGACTTAAGAACTCAAAATTAGCTTTTAAAGCCCTGCATGCATATTTCCCATACAAGCCTCTTGCAGAGGCTGAAGCAAGCCCAAGGTTACAAGCCTAGATGCAAGTTACAAAAAGGCTATATGGTCTCCTATTGCTCAATGGGTAAATTTCACCCTCTCTTAAAATGAGATCCATGTTATCTGTTCAAGAAGTTTAAATCATCCATCTTCCAATCAGTACTTGATGCAGCCACTGGCTCTTACTGTTGTGCTCAATGTTGGTGGAAACATTGTAAGTCTAGGAGTTAACAGCCTGGTAGTGGCTTGAATTTGTTACTAATATGAGCTCTTGTATTCACTTTAAGGTGTGACACACATGGTCTATCCAGGAGCAGTGCATTCTAGATTTGAGCATTCCCTTGGAGTGTATTGGCTTGCCAATGAAGCTGTCCATAAGCTTAAAACCCACCAAGTATTAATTTGTTTATACTATTATTTTGGTTTCTCAACTTGACATACCTGAGGGGTTGTTATGTAATCCTAGTGTTCCTTTTACAGGGTATGGAGCTTGGAATTGATCACTTTGATATACAAACAGTGAAACTTGCAGGTAAGTGATATGGAATGCCTTGTGCATGGATGCTCTTCCTAATGCAGAATAATGAACTTCCATTCCATTGTGGTTGAATTTCTTAGGTCTTCTACATGATATTGGACATGGAC</genome_strand>
        <mrna_strand>TGGCGAATGCTCACTGGCGCACTGCCTCTCTGGCCCCAATTCCCTTGCGGACGGCCTGTGTCGCTTGCTGCTGCAGCAATAGAACAGAAATT------A--A-A-A-----TAA-AG-A-------------GACTTTGGCGGCACTACTATATCACTACTCACATTCTCCTTCCCATTTTCGTGCAAATTAAATATACTCTTCCTCCTACTCTACTCCAGCTG-----CTCTCTCTTTCTCTCTCCTTTCGACACCTCAAAAG...........................................................................................AGTGGTGAAGTAGAGAG-CCAAGGGTGAGTATGGGAGCTTTTTCAAATGAAGAACTCAGTTTCTCTTCCAATTTCAACTTCGCTTCCTCTCAAGATCTCAGATTCTCTAAGCAAATCCATGACAACGTTCACGGCAACATCTACATTGATCCG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTCTACTTGAAGTTCATTGACACAGAACAATTTCAAAG..........................................................................................................................................................................................................................................GCTTCGTGATCTTAAACAACTAG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGTGGCACACATGGTTTACCCAGGTGCAGTGCATTCTAGATTTGAGCATTCCCTTGGAGTGTATTGGCTTGCCAATGAAGCTGTCCATAAGCTTAAAACCCACCAA......................................................................................GGTATGGAGCTTTGAATTGATCACTTTGATATACAAACAGTGAAACTTGCAN......................................................................................GTCTTCTACATGATATCGGACATGGAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0236E02-u8qcS/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E332503" ref_strand="+" ref_description="SGN-E332503 [cTOD-17-L20]">
      <seq>ggcctgtgtcgcttgctgctgcagcaatagaacagaaattaaaaaaacgagacatttgataatagtaattgaaataaagagactttgacggcactactatatcactactcacattctccttcccattttcgtgcaaatcaaatatattcttcctcctactctacgccagctgctctcctctctctttctctctcctttcggcacctcaaaagagtggtgaagtagagagcccaagggtgagtatgggagctttttcaaatgaagaacttagtttctcttccaatttcgacttcgcttcctctcaggatctcagattctctaagcaaatccatgacaacgttcacggcaacatctacatcgacccgctctacttgaagttcattgacacagaacaatttcaaaggcttcgtgatcttaaacaactaggtgtgacacacatggtctatccaggagcagtgcattctagatttgagcattcccttggagtgtattggcttgccaatgaagctgtccataagcttaaaacccaccaaggtatggagcttggaattgatcactttgatatacaaacagtgaaacttgcaggtct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0236E02-u8qcS/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0236E02.1" temp_strand="+" temp_description="C02HBa0236E02.1  AC215430.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0236E02 sequenced_by:kribb upload_account_name:korea">
        <position start="73864" stop="77206"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="74164" g_stop="74375" g_length="212"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="212" r_length="212" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="74376" i_stop="74466" i_length="91">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="74467" g_stop="74619" g_length="153"/>
          <reference_exon_boundary r_type="cDNA" r_start="213" r_stop="365" r_length="153" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="74620" i_stop="75586" i_length="967">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.915" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="75587" g_stop="75624" g_length="38"/>
          <reference_exon_boundary r_type="cDNA" r_start="366" r_stop="403" r_length="38" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="75625" i_stop="75858" i_length="234">
            <donor d_prob="1.000" d_score="0.00"/>
            <acceptor a_prob="0.964" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="75859" g_stop="75881" g_length="23"/>
          <reference_exon_boundary r_type="cDNA" r_start="404" r_stop="426" r_length="23" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="75882" i_stop="76746" i_length="865">
            <donor d_prob="0.991" d_score="0.00"/>
            <acceptor a_prob="0.908" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="76747" g_stop="76853" g_length="107"/>
          <reference_exon_boundary r_type="cDNA" r_start="427" r_stop="533" r_length="107" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="76854" i_stop="76939" i_length="86">
            <donor d_prob="0.864" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="76940" g_stop="76991" g_length="52"/>
          <reference_exon_boundary r_type="cDNA" r_start="534" r_stop="585" r_length="52" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0236E02.1" gen_strand="+" ref_id="SGN-E332503" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>585</cumulative_length_of_scored_exons>
        <coverage percentage="0.993" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0236E02.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E332503" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="74164" e_stop="74375"/>
          <exon e_start="74467" e_stop="74619"/>
          <exon e_start="75587" e_stop="75624"/>
          <exon e_start="75859" e_stop="75881"/>
          <exon e_start="76747" e_stop="76853"/>
          <exon e_start="76940" e_stop="76991"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGCCTGTGTCGCTTGCTGCTGCAGCAATAGAACAGAAATTAAAAAAACGAGACATTTGATAATAGTAATTGAAATAAAGAGACTTTGACGGCACTACTATATCACTACTCACATTCTCCTTCCCATTTTCGTGCAAATCAAATATATTCTTCCTCCTACTCTACGCCAGCTGCTCTCCTCTCTCTTTCTCTCTCCTTTCGGCACCTCAAAAGGTATGTAAACGCGTACGCAATTACTCAACCGTTACCAATATTAGGTTTATTCATTTTGCAATTTTTCTGTTGTTTTCTCTGTGCTGTGTAGAGTGGTGAAGTAGAGAGCCCAAGGGTGAGTATGGGAGCTTTTTCAAATGAAGAACTTAGTTTCTCTTCCAATTTCGACTTCGCTTCCTCTCAGGATCTCAGATTCTCTAAGCAAATCCATGACAACGTTCACGGCAACATCTACATCGACCCGGTATGTTGCTGTCTCTCACTCTCTGCTGGCTAGTTAACTTTCTACATTTCTGTACATGCTTTGCTTATACCTGCACTGTTTGAATTTATAGGTAGTTAGTTTTTCTTTTGTTTTGGTTCTAAGAGCAATCACAAATGTGTATGCTACACTAGTTTTCTGTGCTATCTAATAGCCAAAAGTGTACTACTATTTTAAAGGAAATTGATAACTGTCAATGAGATAAATGAGAATTCAGAGCTATTTTAAGTTGCACTTCATACATTTTTATTATCCACAGTTTTCTATGGGTAAGTCAGTGCCGAAATTGTACTCGCAAATTAGCCAAAATTGTTAACCGTCAGACTGAATAAATGAGTTCAAAACTATTTTGAATATCAATTCATAAATTTTTGTTATCCACAATTTTCTTAAAATTTTTCAACAAATAAAAAAAAAGTTATCTAGAATGCTTGTGACTTCCAATGTTCAAAGAAAAAAGTTATCTAGAACGCTTGTGCCAAAATTTTGATTTTGTTTCATTTAATGAAACATTAGTGACCATGTGACCATAACAATTAACAAGAGAAGATGATTTTTTCTTCATTCATGATTTATTCGAGAAGCATATAAGGTCAAAATTCATAAGTTTGTTTTGCTGGTAAGAATGGATCGATCTTAAAAGAATGATAGCAACAAAGTGTTTTCCCACACTGTCCTTGGTTAACCTGTGACACAATCCTCTTTCAGCTTTCAGGCTAAAACATGTATTTTATCCAATAGATCAATGAGTTGTTATTCGCCCGTATTTATTTATTAGTATGTGATTGTTTACCAGGCAAGAGAGACACTGGGGTGTGGAGGTTACTGTTTTCTCATTGTGATATCAGATCTACACTCTTATTTTCACTATTCTTATACATTTTCTTTAACTTCTTATTGAGAGCTTTGTGCAAACTACTGGAAGTTTATTCTTTTCTGAACTTTGCAGCTCTACTTGAAGTTCATTGACACAGAACAATTTCAAAGGCAAGTTTCCTTATCATCTACTTCTAGTAGTGTAGTATTAGTGGTAGATCTCAGTTTATTGCATCCCTACTATAAATCTATGTACTTTTCGAGTATATGTTTTCATATTGGCTGCAATTTGCCTATGACCTGATAGTCATCTTTTATTTTCTTTTATTTTCGTTTGTATGTTCAACACTTTATCATGAGAGCTTTACTAGAATTATTGAACTGTTTTTTTCTTTTGTTTTCCAGGCTTCGTGATCTTAAACAACTAGGTAAGTTACTATCCTTGTTCCCTATTTGCATACCTGGTCGCAAGCTTGTTTATGCTAGAACATCAAATTTAGCCTTGTGATTCAAAATGGGATATGAAGAAGTTTTCTTATCTATCATCTACGTGTCCGCTGAAATGTGGCATTTAGTTCTTTCATATTGCAAAATTATTACTAGTAAAATGTGGGATGACATAAAAGATGTAACTAACCTGTATTTTATTTGTCTTAATGTGAGTTGTTTTGGTTATCAAAACTATGATAAAATTGATAACTATCTTTGCCTCTTAAATATGTTCTGACATTATCTGCAACTTTCAGCTTCACTTTGTGATTAGCGGTGACACTTGAACGTATAAATAGTCTGTTTCAACTTCAGTGGTATCTAAATTGTGGTTGCATTGGTGACTGTCGTCGGATCCTTGTAAGGTCTTACGATAATTGCAAAGATATCTTGTTTCTTAGTGTCCTATGAAGACATATCTATATAGGTTATTCAAATTCTGGATATTCGTGTAAATGATGACTTAAGAACTCAAAATTAGCTTTTAAAGCCCTGCATGCATATTTCCCATACAAGCCTCTTGCAGAGGCTGAAGCAAGCCCAAGGTTACAAGCCTAGATGCAAGTTACAAAAAGGCTATATGGTCTCCTATTGCTCAATGGGTAAATTTCACCCTCTCTTAAAATGAGATCCATGTTATCTGTTCAAGAAGTTTAAATCATCCATCTTCCAATCAGTACTTGATGCAGCCACTGGCTCTTACTGTTGTGCTCAATGTTGGTGGAAACATTGTAAGTCTAGGAGTTAACAGCCTGGTAGTGGCTTGAATTTGTTACTAATATGAGCTCTTGTATTCACTTTAAGGTGTGACACACATGGTCTATCCAGGAGCAGTGCATTCTAGATTTGAGCATTCCCTTGGAGTGTATTGGCTTGCCAATGAAGCTGTCCATAAGCTTAAAACCCACCAAGTATTAATTTGTTTATACTATTATTTTGGTTTCTCAACTTGACATACCTGAGGGGTTGTTATGTAATCCTAGTGTTCCTTTTACAGGGTATGGAGCTTGGAATTGATCACTTTGATATACAAACAGTGAAACTTGCAG</genome_strand>
        <mrna_strand>GGCCTGTGTCGCTTGCTGCTGCAGCAATAGAACAGAAATTAAAAAAACGAGACATTTGATAATAGTAATTGAAATAAAGAGACTTTGACGGCACTACTATATCACTACTCACATTCTCCTTCCCATTTTCGTGCAAATCAAATATATTCTTCCTCCTACTCTACGCCAGCTGCTCTCCTCTCTCTTTCTCTCTCCTTTCGGCACCTCAAAAG...........................................................................................AGTGGTGAAGTAGAGAGCCCAAGGGTGAGTATGGGAGCTTTTTCAAATGAAGAACTTAGTTTCTCTTCCAATTTCGACTTCGCTTCCTCTCAGGATCTCAGATTCTCTAAGCAAATCCATGACAACGTTCACGGCAACATCTACATCGACCCG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTCTACTTGAAGTTCATTGACACAGAACAATTTCAAAG..........................................................................................................................................................................................................................................GCTTCGTGATCTTAAACAACTAG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGTGACACACATGGTCTATCCAGGAGCAGTGCATTCTAGATTTGAGCATTCCCTTGGAGTGTATTGGCTTGCCAATGAAGCTGTCCATAAGCTTAAAACCCACCAA......................................................................................GGTATGGAGCTTGGAATTGATCACTTTGATATACAAACAGTGAAACTTGCAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0236E02-u8qcS/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E561780" ref_strand="+" ref_description="SGN-E561780 [19124]">
      <seq>aataagagactttggcggactactatatcactactcacattctccttcccattttcgtgcaaattaaatatacttcttcctccttctctacgccagctgctctctctttctctctcttttcggacctcaaaagagtggtgaagtaagagccaaggtgagtatgggagctttttcaaatgaagaactcagtttctcttccaatttcaacttcgcttcctctcaagatctcagattctctaagcaaatccatgacaacgttcacggcaacatctacattgatccgctctacttgaagttcattgacacagaacaatttcaaaggcttcgtgatcttaaacaactaggtgtggcacacatggtctatccaggagcagtgcattctagatttgagcattcccttgggagtgtattggcttgccaatgaagctgtccataagcttaaaacccaccaaggaatggagcttggaattgatcactttgatatacaaacagtgaaacttgcaggtcttctacatgatattggacatggaccttttagtcacttattcgaacgcgagtttcttcctcaagttcgcaatggattggactggtctcatgagcaaatgtctgtggatatgattgatcacattgttgatgagcgtcgtattgata</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0236E02-u8qcS/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0236E02.1" temp_strand="+" temp_description="C02HBa0236E02.1  AC215430.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0236E02 sequenced_by:kribb upload_account_name:korea">
        <position start="73936" stop="78217"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="74236" g_stop="74375" g_length="140"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="133" r_length="133" r_score="0.900"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="74376" i_stop="74466" i_length="91">
            <donor d_prob="0.999" d_score="0.86"/>
            <acceptor a_prob="1.000" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="74467" g_stop="74619" g_length="153"/>
          <reference_exon_boundary r_type="cDNA" r_start="134" r_stop="283" r_length="150" r_score="0.948"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="74620" i_stop="75586" i_length="967">
            <donor d_prob="0.998" d_score="0.96"/>
            <acceptor a_prob="0.915" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="75587" g_stop="75624" g_length="38"/>
          <reference_exon_boundary r_type="cDNA" r_start="284" r_stop="321" r_length="38" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="75625" i_stop="75858" i_length="234">
            <donor d_prob="1.000" d_score="0.00"/>
            <acceptor a_prob="0.964" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="75859" g_stop="75881" g_length="23"/>
          <reference_exon_boundary r_type="cDNA" r_start="322" r_stop="344" r_length="23" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="75882" i_stop="76746" i_length="865">
            <donor d_prob="0.991" d_score="0.00"/>
            <acceptor a_prob="0.908" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="76747" g_stop="76853" g_length="107"/>
          <reference_exon_boundary r_type="cDNA" r_start="345" r_stop="452" r_length="108" r_score="0.972"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="76854" i_stop="76939" i_length="86">
            <donor d_prob="0.864" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="76940" g_stop="76991" g_length="52"/>
          <reference_exon_boundary r_type="cDNA" r_start="453" r_stop="504" r_length="52" r_score="0.981"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="76992" i_stop="77077" i_length="86">
            <donor d_prob="0.983" d_score="0.98"/>
            <acceptor a_prob="0.938" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="77078" g_stop="77162" g_length="85"/>
          <reference_exon_boundary r_type="cDNA" r_start="505" r_stop="589" r_length="85" r_score="0.953"/>
        </exon>
        <intron i_serial="7">
          <gDNA_intron_boundary i_start="77163" i_stop="77855" i_length="693">
            <donor d_prob="0.882" d_score="0.94"/>
            <acceptor a_prob="1.000" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="8">
          <gDNA_exon_boundary g_start="77856" g_stop="77917" g_length="62"/>
          <reference_exon_boundary r_type="cDNA" r_start="590" r_stop="651" r_length="62" r_score="0.984"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0236E02.1" gen_strand="+" ref_id="SGN-E561780" ref_strand="+">
        <total_alignment_score>0.948</total_alignment_score>
        <cumulative_length_of_scored_exons>660</cumulative_length_of_scored_exons>
        <coverage percentage="1.014" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0236E02.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E561780" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="74236" e_stop="74375"/>
          <exon e_start="74467" e_stop="74619"/>
          <exon e_start="75587" e_stop="75624"/>
          <exon e_start="75859" e_stop="75881"/>
          <exon e_start="76747" e_stop="76853"/>
          <exon e_start="76940" e_stop="76991"/>
          <exon e_start="77078" e_stop="77162"/>
          <exon e_start="77856" e_stop="77917"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AATAAAGAGACTTTGACGGCACTACTATATCACTACTCACATTCTCCTTCCCATTTTCGTGCAAATCAAATATA-TTCTTCCTCCTACTCTACGCCAGCTGCTCTCCTCTCTCTTTCTCTCTCCTTTCGGCACCTCAAAAGGTATGTAAACGCGTACGCAATTACTCAACCGTTACCAATATTAGGTTTATTCATTTTGCAATTTTTCTGTTGTTTTCTCTGTGCTGTGTAGAGTGGTGAAGTAGAGAGCCCAAGGGTGAGTATGGGAGCTTTTTCAAATGAAGAACTTAGTTTCTCTTCCAATTTCGACTTCGCTTCCTCTCAGGATCTCAGATTCTCTAAGCAAATCCATGACAACGTTCACGGCAACATCTACATCGACCCGGTATGTTGCTGTCTCTCACTCTCTGCTGGCTAGTTAACTTTCTACATTTCTGTACATGCTTTGCTTATACCTGCACTGTTTGAATTTATAGGTAGTTAGTTTTTCTTTTGTTTTGGTTCTAAGAGCAATCACAAATGTGTATGCTACACTAGTTTTCTGTGCTATCTAATAGCCAAAAGTGTACTACTATTTTAAAGGAAATTGATAACTGTCAATGAGATAAATGAGAATTCAGAGCTATTTTAAGTTGCACTTCATACATTTTTATTATCCACAGTTTTCTATGGGTAAGTCAGTGCCGAAATTGTACTCGCAAATTAGCCAAAATTGTTAACCGTCAGACTGAATAAATGAGTTCAAAACTATTTTGAATATCAATTCATAAATTTTTGTTATCCACAATTTTCTTAAAATTTTTCAACAAATAAAAAAAAAGTTATCTAGAATGCTTGTGACTTCCAATGTTCAAAGAAAAAAGTTATCTAGAACGCTTGTGCCAAAATTTTGATTTTGTTTCATTTAATGAAACATTAGTGACCATGTGACCATAACAATTAACAAGAGAAGATGATTTTTTCTTCATTCATGATTTATTCGAGAAGCATATAAGGTCAAAATTCATAAGTTTGTTTTGCTGGTAAGAATGGATCGATCTTAAAAGAATGATAGCAACAAAGTGTTTTCCCACACTGTCCTTGGTTAACCTGTGACACAATCCTCTTTCAGCTTTCAGGCTAAAACATGTATTTTATCCAATAGATCAATGAGTTGTTATTCGCCCGTATTTATTTATTAGTATGTGATTGTTTACCAGGCAAGAGAGACACTGGGGTGTGGAGGTTACTGTTTTCTCATTGTGATATCAGATCTACACTCTTATTTTCACTATTCTTATACATTTTCTTTAACTTCTTATTGAGAGCTTTGTGCAAACTACTGGAAGTTTATTCTTTTCTGAACTTTGCAGCTCTACTTGAAGTTCATTGACACAGAACAATTTCAAAGGCAAGTTTCCTTATCATCTACTTCTAGTAGTGTAGTATTAGTGGTAGATCTCAGTTTATTGCATCCCTACTATAAATCTATGTACTTTTCGAGTATATGTTTTCATATTGGCTGCAATTTGCCTATGACCTGATAGTCATCTTTTATTTTCTTTTATTTTCGTTTGTATGTTCAACACTTTATCATGAGAGCTTTACTAGAATTATTGAACTGTTTTTTTCTTTTGTTTTCCAGGCTTCGTGATCTTAAACAACTAGGTAAGTTACTATCCTTGTTCCCTATTTGCATACCTGGTCGCAAGCTTGTTTATGCTAGAACATCAAATTTAGCCTTGTGATTCAAAATGGGATATGAAGAAGTTTTCTTATCTATCATCTACGTGTCCGCTGAAATGTGGCATTTAGTTCTTTCATATTGCAAAATTATTACTAGTAAAATGTGGGATGACATAAAAGATGTAACTAACCTGTATTTTATTTGTCTTAATGTGAGTTGTTTTGGTTATCAAAACTATGATAAAATTGATAACTATCTTTGCCTCTTAAATATGTTCTGACATTATCTGCAACTTTCAGCTTCACTTTGTGATTAGCGGTGACACTTGAACGTATAAATAGTCTGTTTCAACTTCAGTGGTATCTAAATTGTGGTTGCATTGGTGACTGTCGTCGGATCCTTGTAAGGTCTTACGATAATTGCAAAGATATCTTGTTTCTTAGTGTCCTATGAAGACATATCTATATAGGTTATTCAAATTCTGGATATTCGTGTAAATGATGACTTAAGAACTCAAAATTAGCTTTTAAAGCCCTGCATGCATATTTCCCATACAAGCCTCTTGCAGAGGCTGAAGCAAGCCCAAGGTTACAAGCCTAGATGCAAGTTACAAAAAGGCTATATGGTCTCCTATTGCTCAATGGGTAAATTTCACCCTCTCTTAAAATGAGATCCATGTTATCTGTTCAAGAAGTTTAAATCATCCATCTTCCAATCAGTACTTGATGCAGCCACTGGCTCTTACTGTTGTGCTCAATGTTGGTGGAAACATTGTAAGTCTAGGAGTTAACAGCCTGGTAGTGGCTTGAATTTGTTACTAATATGAGCTCTTGTATTCACTTTAAGGTGTGACACACATGGTCTATCCAGGAGCAGTGCATTCTAGATTTGAGCATTCCCTT-GGAGTGTATTGGCTTGCCAATGAAGCTGTCCATAAGCTTAAAACCCACCAAGTATTAATTTGTTTATACTATTATTTTGGTTTCTCAACTTGACATACCTGAGGGGTTGTTATGTAATCCTAGTGTTCCTTTTACAGGGTATGGAGCTTGGAATTGATCACTTTGATATACAAACAGTGAAACTTGCAGGTAAGTGATATGGAATGCCTTGTGCATGGATGCTCTTCCTAATGCAGAATAATGAACTTCCATTCCATTGTGGTTGAATTTCTTAGGTCTTCTACATGATATTGGACATGGACCTTTTAGCCACTTGTTTGAACGCGAGTTTCTTCCTCAAGTTTGCAATGGATTGGACTGGTAATACTTTACTGTGGAATGAATTCTGTTATTTGGATACCTCTCAAGATATATGTCACATTCTCATGCTATTCAATTTTTTTTTTTTGAAATAGATGCTATTCAATTTTTTTTTTTTTTTTGAAATAGATGATATTCAATTTTTCTTGGCTAATAAGAGTTGAATTTTTGACATTTCCAATTCCCTGCAACGTACTTGATCTTAGCAAGAATCTTCTACTTTTAGTAAAGGCTTGAAGTGATCAAATAAGGAAGAAATGAATTTTTACTTTTTTAGAGTGGGAATGTTTTCATATTGGATTATTGGCAAGTCTTTAGGAAAGCTCTAGTTTTGCCCTTTTAACTTCAATAAATCAATATATTTCTATCCCAAACTAGTTGGACAGTTTTATCATTTAATCATAGAAAATAAAGTTATGCTTACAGCATACATTATGTGGTAGAAATCCTAAAGTTGTAATTAATCATGGTGGAGGACCTTGGCATATGATGATTTTGTTTAGTTGTTTCCAACTGTTTGTGTCTGCTCTTGCCTGCTGGTTGTAGTGTTGATATTGAGAAAATATTTCCTAGTTAACTATCTTAATGTTTTTGTTGTTCAAGTTTCTTTGAAGCTTCTTGCACTCATAATGAGGTGATGTCATTATTTTAGTATAGTGCATATTAATGACCTTGTCTTATGTTTTATTTTAGGTCTCATGAGCAAATGTCTGTGGACATGATTGATCACATTGTTGATGAGCGTCGTATTGATA</genome_strand>
        <mrna_strand>AATAA-GAGACTTTGGCGG-ACTACTATATCACTACTCACATTCTCCTTCCCATTTTCGTGCAAATTAAATATACTTCTTCCTCCTTCTCTACGCCAGCTG-----CTCTCTCTTTCTCTCTCTTTTCGG-ACCTCAAAAG...........................................................................................AGTGGTGAAGTA-AGAG-CCAA-GGTGAGTATGGGAGCTTTTTCAAATGAAGAACTCAGTTTCTCTTCCAATTTCAACTTCGCTTCCTCTCAAGATCTCAGATTCTCTAAGCAAATCCATGACAACGTTCACGGCAACATCTACATTGATCCG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTCTACTTGAAGTTCATTGACACAGAACAATTTCAAAG..........................................................................................................................................................................................................................................GCTTCGTGATCTTAAACAACTAG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGTGGCACACATGGTCTATCCAGGAGCAGTGCATTCTAGATTTGAGCATTCCCTTGGGAGTGTATTGGCTTGCCAATGAAGCTGTCCATAAGCTTAAAACCCACCAA......................................................................................GGAATGGAGCTTGGAATTGATCACTTTGATATACAAACAGTGAAACTTGCAG......................................................................................GTCTTCTACATGATATTGGACATGGACCTTTTAGTCACTTATTCGAACGCGAGTTTCTTCCTCAAGTTCGCAATGGATTGGACTG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTCTCATGAGCAAATGTCTGTGGATATGATTGATCACATTGTTGATGAGCGTCGTATTGATA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0236E02-u8qcS/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E338725" ref_strand="+" ref_description="SGN-E338725 [cTOE-21-M13]">
      <seq>tctttctctctcctttcggcacctcaaaagagtggtgaagtagagagcccaagggtgagtatgggagctttttcaaatgaagaacttagtttctcttccaatttcgacttcgcttcctctcaggatctcagattctctaagcaaatccatgacaacgttcacggcaacatctacatcgacccgctctacttgaagttcattgacacagaacaatttcaaaggcttcgtgatcttaaacaactaggtgtgacacacatggtctatccaggagcagtgcattctagatttgagcattccct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0236E02-u8qcS/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0236E02.1" temp_strand="+" temp_description="C02HBa0236E02.1  AC215430.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0236E02 sequenced_by:kribb upload_account_name:korea">
        <position start="74046" stop="77101"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="74346" g_stop="74375" g_length="30"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="30" r_length="30" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="74376" i_stop="74466" i_length="91">
            <donor d_prob="0.999" d_score="0.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="74467" g_stop="74619" g_length="153"/>
          <reference_exon_boundary r_type="cDNA" r_start="31" r_stop="183" r_length="153" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="74620" i_stop="75586" i_length="967">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.915" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="75587" g_stop="75624" g_length="38"/>
          <reference_exon_boundary r_type="cDNA" r_start="184" r_stop="221" r_length="38" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="75625" i_stop="75858" i_length="234">
            <donor d_prob="1.000" d_score="0.00"/>
            <acceptor a_prob="0.964" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="75859" g_stop="75881" g_length="23"/>
          <reference_exon_boundary r_type="cDNA" r_start="222" r_stop="244" r_length="23" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="75882" i_stop="76746" i_length="865">
            <donor d_prob="0.991" d_score="0.00"/>
            <acceptor a_prob="0.908" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="76747" g_stop="76801" g_length="55"/>
          <reference_exon_boundary r_type="cDNA" r_start="245" r_stop="299" r_length="55" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0236E02.1" gen_strand="+" ref_id="SGN-E338725" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>299</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0236E02.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E338725" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="74346" e_stop="74375"/>
          <exon e_start="74467" e_stop="74619"/>
          <exon e_start="75587" e_stop="75624"/>
          <exon e_start="75859" e_stop="75881"/>
          <exon e_start="76747" e_stop="76801"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCTTTCTCTCTCCTTTCGGCACCTCAAAAGGTATGTAAACGCGTACGCAATTACTCAACCGTTACCAATATTAGGTTTATTCATTTTGCAATTTTTCTGTTGTTTTCTCTGTGCTGTGTAGAGTGGTGAAGTAGAGAGCCCAAGGGTGAGTATGGGAGCTTTTTCAAATGAAGAACTTAGTTTCTCTTCCAATTTCGACTTCGCTTCCTCTCAGGATCTCAGATTCTCTAAGCAAATCCATGACAACGTTCACGGCAACATCTACATCGACCCGGTATGTTGCTGTCTCTCACTCTCTGCTGGCTAGTTAACTTTCTACATTTCTGTACATGCTTTGCTTATACCTGCACTGTTTGAATTTATAGGTAGTTAGTTTTTCTTTTGTTTTGGTTCTAAGAGCAATCACAAATGTGTATGCTACACTAGTTTTCTGTGCTATCTAATAGCCAAAAGTGTACTACTATTTTAAAGGAAATTGATAACTGTCAATGAGATAAATGAGAATTCAGAGCTATTTTAAGTTGCACTTCATACATTTTTATTATCCACAGTTTTCTATGGGTAAGTCAGTGCCGAAATTGTACTCGCAAATTAGCCAAAATTGTTAACCGTCAGACTGAATAAATGAGTTCAAAACTATTTTGAATATCAATTCATAAATTTTTGTTATCCACAATTTTCTTAAAATTTTTCAACAAATAAAAAAAAAGTTATCTAGAATGCTTGTGACTTCCAATGTTCAAAGAAAAAAGTTATCTAGAACGCTTGTGCCAAAATTTTGATTTTGTTTCATTTAATGAAACATTAGTGACCATGTGACCATAACAATTAACAAGAGAAGATGATTTTTTCTTCATTCATGATTTATTCGAGAAGCATATAAGGTCAAAATTCATAAGTTTGTTTTGCTGGTAAGAATGGATCGATCTTAAAAGAATGATAGCAACAAAGTGTTTTCCCACACTGTCCTTGGTTAACCTGTGACACAATCCTCTTTCAGCTTTCAGGCTAAAACATGTATTTTATCCAATAGATCAATGAGTTGTTATTCGCCCGTATTTATTTATTAGTATGTGATTGTTTACCAGGCAAGAGAGACACTGGGGTGTGGAGGTTACTGTTTTCTCATTGTGATATCAGATCTACACTCTTATTTTCACTATTCTTATACATTTTCTTTAACTTCTTATTGAGAGCTTTGTGCAAACTACTGGAAGTTTATTCTTTTCTGAACTTTGCAGCTCTACTTGAAGTTCATTGACACAGAACAATTTCAAAGGCAAGTTTCCTTATCATCTACTTCTAGTAGTGTAGTATTAGTGGTAGATCTCAGTTTATTGCATCCCTACTATAAATCTATGTACTTTTCGAGTATATGTTTTCATATTGGCTGCAATTTGCCTATGACCTGATAGTCATCTTTTATTTTCTTTTATTTTCGTTTGTATGTTCAACACTTTATCATGAGAGCTTTACTAGAATTATTGAACTGTTTTTTTCTTTTGTTTTCCAGGCTTCGTGATCTTAAACAACTAGGTAAGTTACTATCCTTGTTCCCTATTTGCATACCTGGTCGCAAGCTTGTTTATGCTAGAACATCAAATTTAGCCTTGTGATTCAAAATGGGATATGAAGAAGTTTTCTTATCTATCATCTACGTGTCCGCTGAAATGTGGCATTTAGTTCTTTCATATTGCAAAATTATTACTAGTAAAATGTGGGATGACATAAAAGATGTAACTAACCTGTATTTTATTTGTCTTAATGTGAGTTGTTTTGGTTATCAAAACTATGATAAAATTGATAACTATCTTTGCCTCTTAAATATGTTCTGACATTATCTGCAACTTTCAGCTTCACTTTGTGATTAGCGGTGACACTTGAACGTATAAATAGTCTGTTTCAACTTCAGTGGTATCTAAATTGTGGTTGCATTGGTGACTGTCGTCGGATCCTTGTAAGGTCTTACGATAATTGCAAAGATATCTTGTTTCTTAGTGTCCTATGAAGACATATCTATATAGGTTATTCAAATTCTGGATATTCGTGTAAATGATGACTTAAGAACTCAAAATTAGCTTTTAAAGCCCTGCATGCATATTTCCCATACAAGCCTCTTGCAGAGGCTGAAGCAAGCCCAAGGTTACAAGCCTAGATGCAAGTTACAAAAAGGCTATATGGTCTCCTATTGCTCAATGGGTAAATTTCACCCTCTCTTAAAATGAGATCCATGTTATCTGTTCAAGAAGTTTAAATCATCCATCTTCCAATCAGTACTTGATGCAGCCACTGGCTCTTACTGTTGTGCTCAATGTTGGTGGAAACATTGTAAGTCTAGGAGTTAACAGCCTGGTAGTGGCTTGAATTTGTTACTAATATGAGCTCTTGTATTCACTTTAAGGTGTGACACACATGGTCTATCCAGGAGCAGTGCATTCTAGATTTGAGCATTCCCT</genome_strand>
        <mrna_strand>TCTTTCTCTCTCCTTTCGGCACCTCAAAAG...........................................................................................AGTGGTGAAGTAGAGAGCCCAAGGGTGAGTATGGGAGCTTTTTCAAATGAAGAACTTAGTTTCTCTTCCAATTTCGACTTCGCTTCCTCTCAGGATCTCAGATTCTCTAAGCAAATCCATGACAACGTTCACGGCAACATCTACATCGACCCG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTCTACTTGAAGTTCATTGACACAGAACAATTTCAAAG..........................................................................................................................................................................................................................................GCTTCGTGATCTTAAACAACTAG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGTGACACACATGGTCTATCCAGGAGCAGTGCATTCTAGATTTGAGCATTCCCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0236E02-u8qcS/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E745146" ref_strand="+" ref_description="SGN-E745146 [GI|47105982]">
      <seq>ggttgttttctctgtgctgtgtagagtggtgaagtagagagcccaagggtgagtatgggagctttttcaaatgaagaacttagtttctcttccaatttcgacttcgcttcctctcaggatctcagattctctaagcaaatccatgacaacgttcacggcaacatctacatcgacccgctctacttgaagttcattgacacagaacaatttcaaaggcttcgtgatcttaaacaactaggtgtgacacacatggtctatccaggagcagtgcattctagatttgagcattcccttggagtgtattggcttgccaatgaagctgtccataagcttaaaacccaccaaggtatggagcttggaattgatcactttgatatacaaacagtgaaacttgcaggtcttctacatgatattggacatggaccttttagccacttgtttgaacgcgagtttcttcctcaagtttgcaatggattggactggtctcatgagcaaatgtctgtggacatgattgatcacattgttgatgagcgtcgtattgatattgattctggaaccattaaaagggtcaaggaaatgatacttgctagttccaagtttacgttgacaaaaagctcaagggagaagcagttcttatatgatattgtggctaatggtcgaaatggagtcgatgttgacaagtttgattacattgtccgagatagccgtgcgtgtgcagtaggatgcaattttcaatttgagaggttgatggaaactatgagagtattgggagatgagatatgttatcgagccaaagattatttaaccatccacaagttatttgccacacgagctgatctacacagaactgtttatactcacgctaaagtgaaggcaatagagcttatgattgtagatgcactagtgaaagcaaatgattatctacacatatcatcacatatagagcatccttctcaatactggaaggtcggcatggtctttttgttagcttcaacctccttaattcatggaaccatgaaaataatttctctgtgtatgtggaagtagttagatgacaccattttaaaaaccatcgagactgctccagacccggaactgaaggaatctagggatttgatccttcgtgtccgaaggagagatttgtaccagttctgtaatgagtatgctgtcccaagagacaaaatagagcatttcaaggatgtcacggcacatgatattgtctgttcgcagaaaagtagcagtgagacacttaatgaagaggatgttgctgtgaccaatgtcaggatagatctgacacgcgggaggcataatccgcttgaaagtatccattttttcaaggattatgaaagtgaggagaagttctctatacctgatgatcgcatcagccacttgctgccatcatcatatcaagatatgattgtgagagtctactccaaaaagccccacctggtggaagctatttctgatgcatttgaaaatttccagttaaagacttatggaataaaagcacaggttcatgcaacacctgagaagaaaaaacgccgtgtatgatatttccccagtcatcactacaaaatccacagtagatatatgtgattatagtatatctcaagcaacatattacggtccatttgtacagaagtctttaaatgacacgtgaaaggcctctcaagagttatactagagtttttgtagaaagttgctaccatttactggatatgataatatcctccgagtactctcaacaatttcttgtatcctagcattactcgaaaaatggatttcttggtataaccgacttctgaatattacagaagctgatgcttttatagtaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0236E02-u8qcS/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0236E02.1" temp_strand="+" temp_description="C02HBa0236E02.1  AC215430.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0236E02 sequenced_by:kribb upload_account_name:korea">
        <position start="74144" stop="95691"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="74443" g_stop="74619" g_length="177"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="177" r_length="177" r_score="0.994"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="74620" i_stop="75586" i_length="967">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.915" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="75587" g_stop="75624" g_length="38"/>
          <reference_exon_boundary r_type="cDNA" r_start="178" r_stop="215" r_length="38" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="75625" i_stop="75858" i_length="234">
            <donor d_prob="1.000" d_score="0.00"/>
            <acceptor a_prob="0.964" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="75859" g_stop="75881" g_length="23"/>
          <reference_exon_boundary r_type="cDNA" r_start="216" r_stop="238" r_length="23" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="75882" i_stop="76746" i_length="865">
            <donor d_prob="0.991" d_score="0.00"/>
            <acceptor a_prob="0.908" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="76747" g_stop="76853" g_length="107"/>
          <reference_exon_boundary r_type="cDNA" r_start="239" r_stop="345" r_length="107" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="76854" i_stop="76939" i_length="86">
            <donor d_prob="0.864" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="76940" g_stop="76991" g_length="52"/>
          <reference_exon_boundary r_type="cDNA" r_start="346" r_stop="397" r_length="52" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="76992" i_stop="77077" i_length="86">
            <donor d_prob="0.983" d_score="1.00"/>
            <acceptor a_prob="0.938" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="77078" g_stop="77162" g_length="85"/>
          <reference_exon_boundary r_type="cDNA" r_start="398" r_stop="482" r_length="85" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="77163" i_stop="77855" i_length="693">
            <donor d_prob="0.882" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="77856" g_stop="77946" g_length="91"/>
          <reference_exon_boundary r_type="cDNA" r_start="483" r_stop="573" r_length="91" r_score="1.000"/>
        </exon>
        <intron i_serial="7">
          <gDNA_intron_boundary i_start="77947" i_stop="78745" i_length="799">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.768" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="8">
          <gDNA_exon_boundary g_start="78746" g_stop="78784" g_length="39"/>
          <reference_exon_boundary r_type="cDNA" r_start="574" r_stop="612" r_length="39" r_score="1.000"/>
        </exon>
        <intron i_serial="8">
          <gDNA_intron_boundary i_start="78785" i_stop="78981" i_length="197">
            <donor d_prob="0.822" d_score="0.00"/>
            <acceptor a_prob="0.979" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="9">
          <gDNA_exon_boundary g_start="78982" g_stop="79049" g_length="68"/>
          <reference_exon_boundary r_type="cDNA" r_start="613" r_stop="680" r_length="68" r_score="1.000"/>
        </exon>
        <intron i_serial="9">
          <gDNA_intron_boundary i_start="79050" i_stop="79142" i_length="93">
            <donor d_prob="0.986" d_score="1.00"/>
            <acceptor a_prob="0.987" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="10">
          <gDNA_exon_boundary g_start="79143" g_stop="79205" g_length="63"/>
          <reference_exon_boundary r_type="cDNA" r_start="681" r_stop="743" r_length="63" r_score="1.000"/>
        </exon>
        <intron i_serial="10">
          <gDNA_intron_boundary i_start="79206" i_stop="79310" i_length="105">
            <donor d_prob="0.939" d_score="1.00"/>
            <acceptor a_prob="0.976" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="11">
          <gDNA_exon_boundary g_start="79311" g_stop="79366" g_length="56"/>
          <reference_exon_boundary r_type="cDNA" r_start="744" r_stop="799" r_length="56" r_score="1.000"/>
        </exon>
        <intron i_serial="11">
          <gDNA_intron_boundary i_start="79367" i_stop="79446" i_length="80">
            <donor d_prob="0.982" d_score="1.00"/>
            <acceptor a_prob="0.993" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="12">
          <gDNA_exon_boundary g_start="79447" g_stop="79520" g_length="74"/>
          <reference_exon_boundary r_type="cDNA" r_start="800" r_stop="873" r_length="74" r_score="1.000"/>
        </exon>
        <intron i_serial="12">
          <gDNA_intron_boundary i_start="79521" i_stop="79652" i_length="132">
            <donor d_prob="0.961" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="13">
          <gDNA_exon_boundary g_start="79653" g_stop="79928" g_length="276"/>
          <reference_exon_boundary r_type="cDNA" r_start="874" r_stop="1149" r_length="276" r_score="1.000"/>
        </exon>
        <intron i_serial="13">
          <gDNA_intron_boundary i_start="79929" i_stop="80026" i_length="98">
            <donor d_prob="0.873" d_score="1.00"/>
            <acceptor a_prob="0.993" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="14">
          <gDNA_exon_boundary g_start="80027" g_stop="80107" g_length="81"/>
          <reference_exon_boundary r_type="cDNA" r_start="1150" r_stop="1230" r_length="81" r_score="1.000"/>
        </exon>
        <intron i_serial="14">
          <gDNA_intron_boundary i_start="80108" i_stop="80177" i_length="70">
            <donor d_prob="0.957" d_score="1.00"/>
            <acceptor a_prob="0.992" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="15">
          <gDNA_exon_boundary g_start="80178" g_stop="80269" g_length="92"/>
          <reference_exon_boundary r_type="cDNA" r_start="1231" r_stop="1322" r_length="92" r_score="1.000"/>
        </exon>
        <intron i_serial="15">
          <gDNA_intron_boundary i_start="80270" i_stop="80407" i_length="138">
            <donor d_prob="0.470" d_score="1.00"/>
            <acceptor a_prob="0.434" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="16">
          <gDNA_exon_boundary g_start="80408" g_stop="80423" g_length="16"/>
          <reference_exon_boundary r_type="cDNA" r_start="1323" r_stop="1338" r_length="16" r_score="1.000"/>
        </exon>
        <intron i_serial="16">
          <gDNA_intron_boundary i_start="80424" i_stop="80532" i_length="109">
            <donor d_prob="0.990" d_score="0.00"/>
            <acceptor a_prob="0.956" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="17">
          <gDNA_exon_boundary g_start="80533" g_stop="80643" g_length="111"/>
          <reference_exon_boundary r_type="cDNA" r_start="1339" r_stop="1449" r_length="111" r_score="1.000"/>
        </exon>
        <intron i_serial="17">
          <gDNA_intron_boundary i_start="80644" i_stop="80735" i_length="92">
            <donor d_prob="0.408" d_score="1.00"/>
            <acceptor a_prob="0.976" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="18">
          <gDNA_exon_boundary g_start="80736" g_stop="81119" g_length="384"/>
          <reference_exon_boundary r_type="cDNA" r_start="1450" r_stop="1833" r_length="384" r_score="0.995"/>
        </exon>
        <intron i_serial="18">
          <gDNA_intron_boundary i_start="81120" i_stop="81494" i_length="375">
            <donor d_prob="0.000" d_score="0.98"/>
            <acceptor a_prob="0.000" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="19">
          <gDNA_exon_boundary g_start="81495" g_stop="81509" g_length="15"/>
          <reference_exon_boundary r_type="cDNA" r_start="1834" r_stop="1848" r_length="15" r_score="0.933"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0236E02.1" gen_strand="+" ref_id="SGN-E745146" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>1848</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0236E02.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E745146" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="74443" e_stop="74619"/>
          <exon e_start="75587" e_stop="75624"/>
          <exon e_start="75859" e_stop="75881"/>
          <exon e_start="76747" e_stop="76853"/>
          <exon e_start="76940" e_stop="76991"/>
          <exon e_start="77078" e_stop="77162"/>
          <exon e_start="77856" e_stop="77946"/>
          <exon e_start="78746" e_stop="78784"/>
          <exon e_start="78982" e_stop="79049"/>
          <exon e_start="79143" e_stop="79205"/>
          <exon e_start="79311" e_stop="79366"/>
          <exon e_start="79447" e_stop="79520"/>
          <exon e_start="79653" e_stop="79928"/>
          <exon e_start="80027" e_stop="80107"/>
          <exon e_start="80178" e_stop="80269"/>
          <exon e_start="80408" e_stop="80423"/>
          <exon e_start="80533" e_stop="80643"/>
          <exon e_start="80736" e_stop="81119"/>
          <exon e_start="81495" e_stop="81509"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGTTGTTTTCTCTGTGCTGTGTAGAGTGGTGAAGTAGAGAGCCCAAGGGTGAGTATGGGAGCTTTTTCAAATGAAGAACTTAGTTTCTCTTCCAATTTCGACTTCGCTTCCTCTCAGGATCTCAGATTCTCTAAGCAAATCCATGACAACGTTCACGGCAACATCTACATCGACCCGGTATGTTGCTGTCTCTCACTCTCTGCTGGCTAGTTAACTTTCTACATTTCTGTACATGCTTTGCTTATACCTGCACTGTTTGAATTTATAGGTAGTTAGTTTTTCTTTTGTTTTGGTTCTAAGAGCAATCACAAATGTGTATGCTACACTAGTTTTCTGTGCTATCTAATAGCCAAAAGTGTACTACTATTTTAAAGGAAATTGATAACTGTCAATGAGATAAATGAGAATTCAGAGCTATTTTAAGTTGCACTTCATACATTTTTATTATCCACAGTTTTCTATGGGTAAGTCAGTGCCGAAATTGTACTCGCAAATTAGCCAAAATTGTTAACCGTCAGACTGAATAAATGAGTTCAAAACTATTTTGAATATCAATTCATAAATTTTTGTTATCCACAATTTTCTTAAAATTTTTCAACAAATAAAAAAAAAGTTATCTAGAATGCTTGTGACTTCCAATGTTCAAAGAAAAAAGTTATCTAGAACGCTTGTGCCAAAATTTTGATTTTGTTTCATTTAATGAAACATTAGTGACCATGTGACCATAACAATTAACAAGAGAAGATGATTTTTTCTTCATTCATGATTTATTCGAGAAGCATATAAGGTCAAAATTCATAAGTTTGTTTTGCTGGTAAGAATGGATCGATCTTAAAAGAATGATAGCAACAAAGTGTTTTCCCACACTGTCCTTGGTTAACCTGTGACACAATCCTCTTTCAGCTTTCAGGCTAAAACATGTATTTTATCCAATAGATCAATGAGTTGTTATTCGCCCGTATTTATTTATTAGTATGTGATTGTTTACCAGGCAAGAGAGACACTGGGGTGTGGAGGTTACTGTTTTCTCATTGTGATATCAGATCTACACTCTTATTTTCACTATTCTTATACATTTTCTTTAACTTCTTATTGAGAGCTTTGTGCAAACTACTGGAAGTTTATTCTTTTCTGAACTTTGCAGCTCTACTTGAAGTTCATTGACACAGAACAATTTCAAAGGCAAGTTTCCTTATCATCTACTTCTAGTAGTGTAGTATTAGTGGTAGATCTCAGTTTATTGCATCCCTACTATAAATCTATGTACTTTTCGAGTATATGTTTTCATATTGGCTGCAATTTGCCTATGACCTGATAGTCATCTTTTATTTTCTTTTATTTTCGTTTGTATGTTCAACACTTTATCATGAGAGCTTTACTAGAATTATTGAACTGTTTTTTTCTTTTGTTTTCCAGGCTTCGTGATCTTAAACAACTAGGTAAGTTACTATCCTTGTTCCCTATTTGCATACCTGGTCGCAAGCTTGTTTATGCTAGAACATCAAATTTAGCCTTGTGATTCAAAATGGGATATGAAGAAGTTTTCTTATCTATCATCTACGTGTCCGCTGAAATGTGGCATTTAGTTCTTTCATATTGCAAAATTATTACTAGTAAAATGTGGGATGACATAAAAGATGTAACTAACCTGTATTTTATTTGTCTTAATGTGAGTTGTTTTGGTTATCAAAACTATGATAAAATTGATAACTATCTTTGCCTCTTAAATATGTTCTGACATTATCTGCAACTTTCAGCTTCACTTTGTGATTAGCGGTGACACTTGAACGTATAAATAGTCTGTTTCAACTTCAGTGGTATCTAAATTGTGGTTGCATTGGTGACTGTCGTCGGATCCTTGTAAGGTCTTACGATAATTGCAAAGATATCTTGTTTCTTAGTGTCCTATGAAGACATATCTATATAGGTTATTCAAATTCTGGATATTCGTGTAAATGATGACTTAAGAACTCAAAATTAGCTTTTAAAGCCCTGCATGCATATTTCCCATACAAGCCTCTTGCAGAGGCTGAAGCAAGCCCAAGGTTACAAGCCTAGATGCAAGTTACAAAAAGGCTATATGGTCTCCTATTGCTCAATGGGTAAATTTCACCCTCTCTTAAAATGAGATCCATGTTATCTGTTCAAGAAGTTTAAATCATCCATCTTCCAATCAGTACTTGATGCAGCCACTGGCTCTTACTGTTGTGCTCAATGTTGGTGGAAACATTGTAAGTCTAGGAGTTAACAGCCTGGTAGTGGCTTGAATTTGTTACTAATATGAGCTCTTGTATTCACTTTAAGGTGTGACACACATGGTCTATCCAGGAGCAGTGCATTCTAGATTTGAGCATTCCCTTGGAGTGTATTGGCTTGCCAATGAAGCTGTCCATAAGCTTAAAACCCACCAAGTATTAATTTGTTTATACTATTATTTTGGTTTCTCAACTTGACATACCTGAGGGGTTGTTATGTAATCCTAGTGTTCCTTTTACAGGGTATGGAGCTTGGAATTGATCACTTTGATATACAAACAGTGAAACTTGCAGGTAAGTGATATGGAATGCCTTGTGCATGGATGCTCTTCCTAATGCAGAATAATGAACTTCCATTCCATTGTGGTTGAATTTCTTAGGTCTTCTACATGATATTGGACATGGACCTTTTAGCCACTTGTTTGAACGCGAGTTTCTTCCTCAAGTTTGCAATGGATTGGACTGGTAATACTTTACTGTGGAATGAATTCTGTTATTTGGATACCTCTCAAGATATATGTCACATTCTCATGCTATTCAATTTTTTTTTTTTGAAATAGATGCTATTCAATTTTTTTTTTTTTTTTGAAATAGATGATATTCAATTTTTCTTGGCTAATAAGAGTTGAATTTTTGACATTTCCAATTCCCTGCAACGTACTTGATCTTAGCAAGAATCTTCTACTTTTAGTAAAGGCTTGAAGTGATCAAATAAGGAAGAAATGAATTTTTACTTTTTTAGAGTGGGAATGTTTTCATATTGGATTATTGGCAAGTCTTTAGGAAAGCTCTAGTTTTGCCCTTTTAACTTCAATAAATCAATATATTTCTATCCCAAACTAGTTGGACAGTTTTATCATTTAATCATAGAAAATAAAGTTATGCTTACAGCATACATTATGTGGTAGAAATCCTAAAGTTGTAATTAATCATGGTGGAGGACCTTGGCATATGATGATTTTGTTTAGTTGTTTCCAACTGTTTGTGTCTGCTCTTGCCTGCTGGTTGTAGTGTTGATATTGAGAAAATATTTCCTAGTTAACTATCTTAATGTTTTTGTTGTTCAAGTTTCTTTGAAGCTTCTTGCACTCATAATGAGGTGATGTCATTATTTTAGTATAGTGCATATTAATGACCTTGTCTTATGTTTTATTTTAGGTCTCATGAGCAAATGTCTGTGGACATGATTGATCACATTGTTGATGAGCGTCGTATTGATATTGATTCTGGAACCATTAAAAGGGTCAAGGTAAGATGAATTATTTTGATTTATGCTAGTTGATATCATACGAGATGAGAATGGTAATTTGCTTATAACATGTAGTATTTGTCAGTTTCAAAAAAAAAAAAAAATCCCTCTGTTTCAACTTGATTGTCCTATTTTGTAGAATGTACCAAATTGTCTTTTAAACTTGTGGTCTTAAACATGCTTTGTGAAAATTTATAATTAAAGAGTTGCCATAAAAGGGAAGAGTCATTTTTTTAAAAAATGGACTCAAACGGAAAGTAGGACTAACAAACTGAAATGGAGGGAGTATGAAGTATTTGTGCAAACTTGTATCGTCTCCAGAAGCAATTTGAATTTTAGGTGCTACTCAAGTATGGCAGACACGTGGAACTTTGTCAGCTATTGGCTGAAAGAGAATTTGTATGTGTGGAACTAAAACCTGCAAAGAGATAGCTTCTTTCATTAAATTCTCTTGAGCTACTAGTAAGAAAAAGCTTCTGCTGATTTGCAATGCTCTTCTTTACTATGCTTTTCAATGGTAACTAATGTCAAATTTTAGTGAACGAATTCTTTGACCAAAGTTATGACTATACGTTGGTTGAGATAATAAAGTTATTCACCATTCATGTGAGTTATTATTACTTCATGCAAATTCTATGACCAAGCTATGACTATGTTCGTTGAGATATTCATGTGAGTTACTATTCTTCATACAGCTAAAAGCAAATTGATTGTACATGCCACAAGTCATCATAAGACTTGTTTATATTGTAAGCAGGAAAAATTTTAAACGTGGCCTTTTGACCTCTATATTTGACAGGAAATGATACTTGCTAGTTCCAAGTTTACGTTGACAAAAGTAAGTCCTTCTCTTTCCATTTTCCAGCACATAGTTATCAGGAGGAAAAAAAACGTGATTCTTGCAATTTGACTGTTTTCATTTGACATGCATTTGCACTTCAATCTGGAATTTTTAGCTTTTTCTGCTCATCATTTCACATCATATTCCATTTTTGAAACTTGTGCACTGCTTCAATTTGATTGATTAATATGTAGAGCTCAAGGGAGAAGCAGTTCTTATATGATATTGTGGCTAATGGTCGAAATGGAGTCGATGTTGACAAGTTGGTTTCTAAACTATAGATTATTCTCTTCTCTTTTTTTTCCAACCTATTCTTTTCCAGCTTTCACCGGATGAAGCTTTCTTTGGTTTGCAGGTTTGATTACATTGTCCGAGATAGCCGTGCGTGTGCAGTAGGATGCAATTTTCAATTTGAGAGGTCTTCTCTTTCATCTTTTTGTCTATTGTGAATCGACATCTTTTCACAAATATCGAGAGAAAGGGAAAATAATTCTTTACCGTGAACTGTATTCATTTTCTGTAGGTTGATGGAAACTATGAGAGTATTGGGAGATGAGATATGTTATCGAGCCAAAGATTGTTAGTACTCAACTCTAACCAATATCTTATTTATTTTTGTTTGACTTCTGGTCTTATTATTTGTGTGGATAAATCCTCAGATTTAACCATCCACAAGTTATTTGCCACACGAGCTGATCTACACAGAACTGTTTATACTCACGCTAAAGTGAAGGTACATAGCTAATTTGACGAAGTTGTGCACTGATTTTCTCACCAGCATATCTGAAATGTGGAAGTTATCATTTTGTATGTCATATTTAAGTATGTACACATTTTCAATTTGTTTTCCCATATCATTGTACAGGCAATAGAGCTTATGATTGTAGATGCACTAGTGAAAGCAAATGATTATCTACACATATCATCACATATAGAGCATCCTTCTCAATACTGGAAGGTCGGCATGGTCTTTTTGTTAGCTTCAACCTCCTTAATTCATGGAACCATGAAAATAATTTCTCTGTGTATGTGGAAGTAGTTAGATGACACCATTTTAAAAACCATCGAGACTGCTCCAGACCCGGAACTGAAGGAATCTAGGGATTTGATCCTTCGTGTCCGAAGGAGAGATTTGTACCAGGTACTGAGGTTATCTAATGGGTGTTGATTAAGCAGGTTATATGAGTATTATGGGATGTTTGAAGTTTACGGGTTAATTCTTGTTTTTGCACATTGCAGTTCTGTAATGAGTATGCTGTCCCAAGAGACAAAATAGAGCATTTCAAGGATGTCACGGCACATGATATTGTCTGTTCGCAGGTAGCTAACATATAGTAGTCTGTTTTTGGGAGTCTTTAATATTTCTATGGTAATAATCATTATCTTACAGAAAAGTAGCAGTGAGACACTTAATGAAGAGGATGTTGCTGTGACCAATGTCAGGATAGATCTGACACGCGGGAGGCATAATCCGCTTGAAAGGTTGGTCAAAATGGGTCATCCTATGCAGTTCTTGCACTTGCATGCAATTTCTCTATCCCTCTCCTCCACTTTTATTATCATTCTGAACCTTTCAATTTATTTTCTTTGTATGCTGGTTGGACGTGTTGCCTCTGCCAGTATCCATTTTTTCAAGGTACAGACTATGGGTTCTACAAGTTTGATCATCAAAATCTATTACTTTTCTTGTCTGCATGTTTTTCATCTTTCCCGACCTCACTCTTAATGATTTGATTGAAATTCAGGATTATGAAAGTGAGGAGAAGTTCTCTATACCTGATGATCGCATCAGCCACTTGCTGCCATCATCATATCAAGATATGATTGTGAGAGTCTACTCCAAAAAGCCCCACCTGGTCTGTCCAGATAACGAGTATGCATTTGTTTTTTGCGTTCTTCTCCATCAAAGTCTGATCTCAGTTTTTTTGTATCCTACTCAAATTTTCAGGTGGAAGCTATTTCTGATGCATTTGAAAATTTCCAGTTAAAGACTTATGGAATAAAAGCACAGGTTCATGCAACACCTGAGAAGAAAAAACGCCGTGTATGATATTTCCCCAGTCATCACTACAAAATCCACAGTAGATATATGTGATTATAGTATATCTCAAGCAACATATTACAGTCCATTTGTACAGAAGTCTTTAAATGACACGTGAAAGGCCTCTCAAGAGTTATACTAGAGTTTTTGTAGAAAGTTGCTACCATTTACTGGATATGATAATATCCTCCGAGTACTCTCAACAATTTCTTGTATCCTAGCATTACTCGAAAAATGGATTTCTTGGTATAACCGACTTCTGAATATTACAGAAGCTGATGCTTTTATAATACCTTCTCTTTCTACTTGGTGGTTGGTGAATGAATATATGTTAAGAGGATTTGATGTAGCTAAAGTTTGTTTATGTGCTGGTTTTTGAAGGAAAGAGCAACAGTTCTATTCATGATGAGTACCATCTATGAAAATAAAGTTGCAACTGCGAAAGGTAACTAAAACTCTGAGATTCATAACTTAGTGTTGTAGCAAGAAGCAATATTTGATGGAGGTTACGTATATTCTTGGCATTCTTTTATTTCTGCCGCATATAGAAAAGTATTCATCTCTATACTCGGTTATATTGTTTTTTTTATCTTCTTCGCTTCCTTATTTTTTCAGGGTTTTATAATTGTTGATCCTTCTAGATTCAGAATCCATTTTGATAAAAAGAAAAAAAAAAACAAA</genome_strand>
        <mrna_strand>GGTTGTTTTCTCTGTGCTGTGTAGAGTGGTGAAGTAGAGAGCCCAAGGGTGAGTATGGGAGCTTTTTCAAATGAAGAACTTAGTTTCTCTTCCAATTTCGACTTCGCTTCCTCTCAGGATCTCAGATTCTCTAAGCAAATCCATGACAACGTTCACGGCAACATCTACATCGACCCG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTCTACTTGAAGTTCATTGACACAGAACAATTTCAAAG..........................................................................................................................................................................................................................................GCTTCGTGATCTTAAACAACTAG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGTGACACACATGGTCTATCCAGGAGCAGTGCATTCTAGATTTGAGCATTCCCTTGGAGTGTATTGGCTTGCCAATGAAGCTGTCCATAAGCTTAAAACCCACCAA......................................................................................GGTATGGAGCTTGGAATTGATCACTTTGATATACAAACAGTGAAACTTGCAG......................................................................................GTCTTCTACATGATATTGGACATGGACCTTTTAGCCACTTGTTTGAACGCGAGTTTCTTCCTCAAGTTTGCAATGGATTGGACTG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTCTCATGAGCAAATGTCTGTGGACATGATTGATCACATTGTTGATGAGCGTCGTATTGATATTGATTCTGGAACCATTAAAAGGGTCAAG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAAATGATACTTGCTAGTTCCAAGTTTACGTTGACAAAA.....................................................................................................................................................................................................AGCTCAAGGGAGAAGCAGTTCTTATATGATATTGTGGCTAATGGTCGAAATGGAGTCGATGTTGACAA.............................................................................................GTTTGATTACATTGTCCGAGATAGCCGTGCGTGTGCAGTAGGATGCAATTTTCAATTTGAGAG.........................................................................................................GTTGATGGAAACTATGAGAGTATTGGGAGATGAGATATGTTATCGAGCCAAAGATT................................................................................ATTTAACCATCCACAAGTTATTTGCCACACGAGCTGATCTACACAGAACTGTTTATACTCACGCTAAAGTGAAG....................................................................................................................................GCAATAGAGCTTATGATTGTAGATGCACTAGTGAAAGCAAATGATTATCTACACATATCATCACATATAGAGCATCCTTCTCAATACTGGAAGGTCGGCATGGTCTTTTTGTTAGCTTCAACCTCCTTAATTCATGGAACCATGAAAATAATTTCTCTGTGTATGTGGAAGTAGTTAGATGACACCATTTTAAAAACCATCGAGACTGCTCCAGACCCGGAACTGAAGGAATCTAGGGATTTGATCCTTCGTGTCCGAAGGAGAGATTTGTACCAG..................................................................................................TTCTGTAATGAGTATGCTGTCCCAAGAGACAAAATAGAGCATTTCAAGGATGTCACGGCACATGATATTGTCTGTTCGCAG......................................................................AAAAGTAGCAGTGAGACACTTAATGAAGAGGATGTTGCTGTGACCAATGTCAGGATAGATCTGACACGCGGGAGGCATAATCCGCTTGAAAG..........................................................................................................................................TATCCATTTTTTCAAG.............................................................................................................GATTATGAAAGTGAGGAGAAGTTCTCTATACCTGATGATCGCATCAGCCACTTGCTGCCATCATCATATCAAGATATGATTGTGAGAGTCTACTCCAAAAAGCCCCACCTG............................................................................................GTGGAAGCTATTTCTGATGCATTTGAAAATTTCCAGTTAAAGACTTATGGAATAAAAGCACAGGTTCATGCAACACCTGAGAAGAAAAAACGCCGTGTATGATATTTCCCCAGTCATCACTACAAAATCCACAGTAGATATATGTGATTATAGTATATCTCAAGCAACATATTACGGTCCATTTGTACAGAAGTCTTTAAATGACACGTGAAAGGCCTCTCAAGAGTTATACTAGAGTTTTTGTAGAAAGTTGCTACCATTTACTGGATATGATAATATCCTCCGAGTACTCTCAACAATTTCTTGTATCCTAGCATTACTCGAAAAATGGATTTCTTGGTATAACCGACTTCTGAATATTACAGAAGCTGATGCTTTTATAGT.......................................................................................................................................................................................................................................................................................................................................................................................AAAAAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0236E02-u8qcS/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E548022" ref_strand="+" ref_description="SGN-E548022 [TUS-57-E12]">
      <seq>gaagaacttagtttctcttccaatttcgacttcgcttcctctcaggatctcagattctctaagcaaatccatgacaacgttcacggcaacatctacatcgacccgctctacttgaagttcattgacacagaacaatttcaaaggcttcgtgatcttaaacaactaggtgtgacacacatggtctatccaggagcagtgcattctagatttgagcattcccttggagtgtattggcttgccaatgaagctgtccataagcttaaaacccaccaaggtatggagcttggaattgatcactttgatatacaaacagtgaaacttgcaggtcttctacatgatattggacatggaccttttagccacttgtttgaacgcgagtttcttcctcaagtttgcaatggattggactggtctcatgagcaaatgtctgtggacatgattgatcacattgttgatgagcgtcgtattgatattgattctggaaccattaaaagggtcaaggaaatgatacttgctagttccaagtttacgttgacaaaaagctcaagggagaagcagttcttatatgatattgtggctaatggtcgaaatggagtcgatgttgacaagtttgattacattgtccgagatagccgtgcgtgtgcagtaggatgcaattttcaatttgagaggttgatggaaactatgagagtattgggagatgagatatgttatcgagccaaagattatttaaccatccacaagttatttgccacacgagctgatctacacagaactgtttatactcacgcta</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0236E02-u8qcS/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0236E02.1" temp_strand="+" temp_description="C02HBa0236E02.1  AC215430.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0236E02 sequenced_by:kribb upload_account_name:korea">
        <position start="74215" stop="79812"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="74515" g_stop="74619" g_length="105"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="105" r_length="105" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="74620" i_stop="75586" i_length="967">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.915" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="75587" g_stop="75624" g_length="38"/>
          <reference_exon_boundary r_type="cDNA" r_start="106" r_stop="143" r_length="38" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="75625" i_stop="75858" i_length="234">
            <donor d_prob="1.000" d_score="0.00"/>
            <acceptor a_prob="0.964" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="75859" g_stop="75881" g_length="23"/>
          <reference_exon_boundary r_type="cDNA" r_start="144" r_stop="166" r_length="23" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="75882" i_stop="76746" i_length="865">
            <donor d_prob="0.991" d_score="0.00"/>
            <acceptor a_prob="0.908" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="76747" g_stop="76853" g_length="107"/>
          <reference_exon_boundary r_type="cDNA" r_start="167" r_stop="273" r_length="107" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="76854" i_stop="76939" i_length="86">
            <donor d_prob="0.864" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="76940" g_stop="76991" g_length="52"/>
          <reference_exon_boundary r_type="cDNA" r_start="274" r_stop="325" r_length="52" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="76992" i_stop="77077" i_length="86">
            <donor d_prob="0.983" d_score="1.00"/>
            <acceptor a_prob="0.938" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="77078" g_stop="77162" g_length="85"/>
          <reference_exon_boundary r_type="cDNA" r_start="326" r_stop="410" r_length="85" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="77163" i_stop="77855" i_length="693">
            <donor d_prob="0.882" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="77856" g_stop="77946" g_length="91"/>
          <reference_exon_boundary r_type="cDNA" r_start="411" r_stop="501" r_length="91" r_score="1.000"/>
        </exon>
        <intron i_serial="7">
          <gDNA_intron_boundary i_start="77947" i_stop="78745" i_length="799">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.768" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="8">
          <gDNA_exon_boundary g_start="78746" g_stop="78784" g_length="39"/>
          <reference_exon_boundary r_type="cDNA" r_start="502" r_stop="540" r_length="39" r_score="1.000"/>
        </exon>
        <intron i_serial="8">
          <gDNA_intron_boundary i_start="78785" i_stop="78981" i_length="197">
            <donor d_prob="0.822" d_score="0.00"/>
            <acceptor a_prob="0.979" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="9">
          <gDNA_exon_boundary g_start="78982" g_stop="79049" g_length="68"/>
          <reference_exon_boundary r_type="cDNA" r_start="541" r_stop="608" r_length="68" r_score="1.000"/>
        </exon>
        <intron i_serial="9">
          <gDNA_intron_boundary i_start="79050" i_stop="79142" i_length="93">
            <donor d_prob="0.986" d_score="1.00"/>
            <acceptor a_prob="0.987" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="10">
          <gDNA_exon_boundary g_start="79143" g_stop="79205" g_length="63"/>
          <reference_exon_boundary r_type="cDNA" r_start="609" r_stop="671" r_length="63" r_score="1.000"/>
        </exon>
        <intron i_serial="10">
          <gDNA_intron_boundary i_start="79206" i_stop="79310" i_length="105">
            <donor d_prob="0.939" d_score="1.00"/>
            <acceptor a_prob="0.976" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="11">
          <gDNA_exon_boundary g_start="79311" g_stop="79366" g_length="56"/>
          <reference_exon_boundary r_type="cDNA" r_start="672" r_stop="727" r_length="56" r_score="1.000"/>
        </exon>
        <intron i_serial="11">
          <gDNA_intron_boundary i_start="79367" i_stop="79446" i_length="80">
            <donor d_prob="0.982" d_score="1.00"/>
            <acceptor a_prob="0.993" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="12">
          <gDNA_exon_boundary g_start="79447" g_stop="79512" g_length="66"/>
          <reference_exon_boundary r_type="cDNA" r_start="728" r_stop="793" r_length="66" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0236E02.1" gen_strand="+" ref_id="SGN-E548022" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>793</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0236E02.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E548022" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="74515" e_stop="74619"/>
          <exon e_start="75587" e_stop="75624"/>
          <exon e_start="75859" e_stop="75881"/>
          <exon e_start="76747" e_stop="76853"/>
          <exon e_start="76940" e_stop="76991"/>
          <exon e_start="77078" e_stop="77162"/>
          <exon e_start="77856" e_stop="77946"/>
          <exon e_start="78746" e_stop="78784"/>
          <exon e_start="78982" e_stop="79049"/>
          <exon e_start="79143" e_stop="79205"/>
          <exon e_start="79311" e_stop="79366"/>
          <exon e_start="79447" e_stop="79512"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAAGAACTTAGTTTCTCTTCCAATTTCGACTTCGCTTCCTCTCAGGATCTCAGATTCTCTAAGCAAATCCATGACAACGTTCACGGCAACATCTACATCGACCCGGTATGTTGCTGTCTCTCACTCTCTGCTGGCTAGTTAACTTTCTACATTTCTGTACATGCTTTGCTTATACCTGCACTGTTTGAATTTATAGGTAGTTAGTTTTTCTTTTGTTTTGGTTCTAAGAGCAATCACAAATGTGTATGCTACACTAGTTTTCTGTGCTATCTAATAGCCAAAAGTGTACTACTATTTTAAAGGAAATTGATAACTGTCAATGAGATAAATGAGAATTCAGAGCTATTTTAAGTTGCACTTCATACATTTTTATTATCCACAGTTTTCTATGGGTAAGTCAGTGCCGAAATTGTACTCGCAAATTAGCCAAAATTGTTAACCGTCAGACTGAATAAATGAGTTCAAAACTATTTTGAATATCAATTCATAAATTTTTGTTATCCACAATTTTCTTAAAATTTTTCAACAAATAAAAAAAAAGTTATCTAGAATGCTTGTGACTTCCAATGTTCAAAGAAAAAAGTTATCTAGAACGCTTGTGCCAAAATTTTGATTTTGTTTCATTTAATGAAACATTAGTGACCATGTGACCATAACAATTAACAAGAGAAGATGATTTTTTCTTCATTCATGATTTATTCGAGAAGCATATAAGGTCAAAATTCATAAGTTTGTTTTGCTGGTAAGAATGGATCGATCTTAAAAGAATGATAGCAACAAAGTGTTTTCCCACACTGTCCTTGGTTAACCTGTGACACAATCCTCTTTCAGCTTTCAGGCTAAAACATGTATTTTATCCAATAGATCAATGAGTTGTTATTCGCCCGTATTTATTTATTAGTATGTGATTGTTTACCAGGCAAGAGAGACACTGGGGTGTGGAGGTTACTGTTTTCTCATTGTGATATCAGATCTACACTCTTATTTTCACTATTCTTATACATTTTCTTTAACTTCTTATTGAGAGCTTTGTGCAAACTACTGGAAGTTTATTCTTTTCTGAACTTTGCAGCTCTACTTGAAGTTCATTGACACAGAACAATTTCAAAGGCAAGTTTCCTTATCATCTACTTCTAGTAGTGTAGTATTAGTGGTAGATCTCAGTTTATTGCATCCCTACTATAAATCTATGTACTTTTCGAGTATATGTTTTCATATTGGCTGCAATTTGCCTATGACCTGATAGTCATCTTTTATTTTCTTTTATTTTCGTTTGTATGTTCAACACTTTATCATGAGAGCTTTACTAGAATTATTGAACTGTTTTTTTCTTTTGTTTTCCAGGCTTCGTGATCTTAAACAACTAGGTAAGTTACTATCCTTGTTCCCTATTTGCATACCTGGTCGCAAGCTTGTTTATGCTAGAACATCAAATTTAGCCTTGTGATTCAAAATGGGATATGAAGAAGTTTTCTTATCTATCATCTACGTGTCCGCTGAAATGTGGCATTTAGTTCTTTCATATTGCAAAATTATTACTAGTAAAATGTGGGATGACATAAAAGATGTAACTAACCTGTATTTTATTTGTCTTAATGTGAGTTGTTTTGGTTATCAAAACTATGATAAAATTGATAACTATCTTTGCCTCTTAAATATGTTCTGACATTATCTGCAACTTTCAGCTTCACTTTGTGATTAGCGGTGACACTTGAACGTATAAATAGTCTGTTTCAACTTCAGTGGTATCTAAATTGTGGTTGCATTGGTGACTGTCGTCGGATCCTTGTAAGGTCTTACGATAATTGCAAAGATATCTTGTTTCTTAGTGTCCTATGAAGACATATCTATATAGGTTATTCAAATTCTGGATATTCGTGTAAATGATGACTTAAGAACTCAAAATTAGCTTTTAAAGCCCTGCATGCATATTTCCCATACAAGCCTCTTGCAGAGGCTGAAGCAAGCCCAAGGTTACAAGCCTAGATGCAAGTTACAAAAAGGCTATATGGTCTCCTATTGCTCAATGGGTAAATTTCACCCTCTCTTAAAATGAGATCCATGTTATCTGTTCAAGAAGTTTAAATCATCCATCTTCCAATCAGTACTTGATGCAGCCACTGGCTCTTACTGTTGTGCTCAATGTTGGTGGAAACATTGTAAGTCTAGGAGTTAACAGCCTGGTAGTGGCTTGAATTTGTTACTAATATGAGCTCTTGTATTCACTTTAAGGTGTGACACACATGGTCTATCCAGGAGCAGTGCATTCTAGATTTGAGCATTCCCTTGGAGTGTATTGGCTTGCCAATGAAGCTGTCCATAAGCTTAAAACCCACCAAGTATTAATTTGTTTATACTATTATTTTGGTTTCTCAACTTGACATACCTGAGGGGTTGTTATGTAATCCTAGTGTTCCTTTTACAGGGTATGGAGCTTGGAATTGATCACTTTGATATACAAACAGTGAAACTTGCAGGTAAGTGATATGGAATGCCTTGTGCATGGATGCTCTTCCTAATGCAGAATAATGAACTTCCATTCCATTGTGGTTGAATTTCTTAGGTCTTCTACATGATATTGGACATGGACCTTTTAGCCACTTGTTTGAACGCGAGTTTCTTCCTCAAGTTTGCAATGGATTGGACTGGTAATACTTTACTGTGGAATGAATTCTGTTATTTGGATACCTCTCAAGATATATGTCACATTCTCATGCTATTCAATTTTTTTTTTTTGAAATAGATGCTATTCAATTTTTTTTTTTTTTTTGAAATAGATGATATTCAATTTTTCTTGGCTAATAAGAGTTGAATTTTTGACATTTCCAATTCCCTGCAACGTACTTGATCTTAGCAAGAATCTTCTACTTTTAGTAAAGGCTTGAAGTGATCAAATAAGGAAGAAATGAATTTTTACTTTTTTAGAGTGGGAATGTTTTCATATTGGATTATTGGCAAGTCTTTAGGAAAGCTCTAGTTTTGCCCTTTTAACTTCAATAAATCAATATATTTCTATCCCAAACTAGTTGGACAGTTTTATCATTTAATCATAGAAAATAAAGTTATGCTTACAGCATACATTATGTGGTAGAAATCCTAAAGTTGTAATTAATCATGGTGGAGGACCTTGGCATATGATGATTTTGTTTAGTTGTTTCCAACTGTTTGTGTCTGCTCTTGCCTGCTGGTTGTAGTGTTGATATTGAGAAAATATTTCCTAGTTAACTATCTTAATGTTTTTGTTGTTCAAGTTTCTTTGAAGCTTCTTGCACTCATAATGAGGTGATGTCATTATTTTAGTATAGTGCATATTAATGACCTTGTCTTATGTTTTATTTTAGGTCTCATGAGCAAATGTCTGTGGACATGATTGATCACATTGTTGATGAGCGTCGTATTGATATTGATTCTGGAACCATTAAAAGGGTCAAGGTAAGATGAATTATTTTGATTTATGCTAGTTGATATCATACGAGATGAGAATGGTAATTTGCTTATAACATGTAGTATTTGTCAGTTTCAAAAAAAAAAAAAAATCCCTCTGTTTCAACTTGATTGTCCTATTTTGTAGAATGTACCAAATTGTCTTTTAAACTTGTGGTCTTAAACATGCTTTGTGAAAATTTATAATTAAAGAGTTGCCATAAAAGGGAAGAGTCATTTTTTTAAAAAATGGACTCAAACGGAAAGTAGGACTAACAAACTGAAATGGAGGGAGTATGAAGTATTTGTGCAAACTTGTATCGTCTCCAGAAGCAATTTGAATTTTAGGTGCTACTCAAGTATGGCAGACACGTGGAACTTTGTCAGCTATTGGCTGAAAGAGAATTTGTATGTGTGGAACTAAAACCTGCAAAGAGATAGCTTCTTTCATTAAATTCTCTTGAGCTACTAGTAAGAAAAAGCTTCTGCTGATTTGCAATGCTCTTCTTTACTATGCTTTTCAATGGTAACTAATGTCAAATTTTAGTGAACGAATTCTTTGACCAAAGTTATGACTATACGTTGGTTGAGATAATAAAGTTATTCACCATTCATGTGAGTTATTATTACTTCATGCAAATTCTATGACCAAGCTATGACTATGTTCGTTGAGATATTCATGTGAGTTACTATTCTTCATACAGCTAAAAGCAAATTGATTGTACATGCCACAAGTCATCATAAGACTTGTTTATATTGTAAGCAGGAAAAATTTTAAACGTGGCCTTTTGACCTCTATATTTGACAGGAAATGATACTTGCTAGTTCCAAGTTTACGTTGACAAAAGTAAGTCCTTCTCTTTCCATTTTCCAGCACATAGTTATCAGGAGGAAAAAAAACGTGATTCTTGCAATTTGACTGTTTTCATTTGACATGCATTTGCACTTCAATCTGGAATTTTTAGCTTTTTCTGCTCATCATTTCACATCATATTCCATTTTTGAAACTTGTGCACTGCTTCAATTTGATTGATTAATATGTAGAGCTCAAGGGAGAAGCAGTTCTTATATGATATTGTGGCTAATGGTCGAAATGGAGTCGATGTTGACAAGTTGGTTTCTAAACTATAGATTATTCTCTTCTCTTTTTTTTCCAACCTATTCTTTTCCAGCTTTCACCGGATGAAGCTTTCTTTGGTTTGCAGGTTTGATTACATTGTCCGAGATAGCCGTGCGTGTGCAGTAGGATGCAATTTTCAATTTGAGAGGTCTTCTCTTTCATCTTTTTGTCTATTGTGAATCGACATCTTTTCACAAATATCGAGAGAAAGGGAAAATAATTCTTTACCGTGAACTGTATTCATTTTCTGTAGGTTGATGGAAACTATGAGAGTATTGGGAGATGAGATATGTTATCGAGCCAAAGATTGTTAGTACTCAACTCTAACCAATATCTTATTTATTTTTGTTTGACTTCTGGTCTTATTATTTGTGTGGATAAATCCTCAGATTTAACCATCCACAAGTTATTTGCCACACGAGCTGATCTACACAGAACTGTTTATACTCACGCTA</genome_strand>
        <mrna_strand>GAAGAACTTAGTTTCTCTTCCAATTTCGACTTCGCTTCCTCTCAGGATCTCAGATTCTCTAAGCAAATCCATGACAACGTTCACGGCAACATCTACATCGACCCG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTCTACTTGAAGTTCATTGACACAGAACAATTTCAAAG..........................................................................................................................................................................................................................................GCTTCGTGATCTTAAACAACTAG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGTGACACACATGGTCTATCCAGGAGCAGTGCATTCTAGATTTGAGCATTCCCTTGGAGTGTATTGGCTTGCCAATGAAGCTGTCCATAAGCTTAAAACCCACCAA......................................................................................GGTATGGAGCTTGGAATTGATCACTTTGATATACAAACAGTGAAACTTGCAG......................................................................................GTCTTCTACATGATATTGGACATGGACCTTTTAGCCACTTGTTTGAACGCGAGTTTCTTCCTCAAGTTTGCAATGGATTGGACTG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTCTCATGAGCAAATGTCTGTGGACATGATTGATCACATTGTTGATGAGCGTCGTATTGATATTGATTCTGGAACCATTAAAAGGGTCAAG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAAATGATACTTGCTAGTTCCAAGTTTACGTTGACAAAA.....................................................................................................................................................................................................AGCTCAAGGGAGAAGCAGTTCTTATATGATATTGTGGCTAATGGTCGAAATGGAGTCGATGTTGACAA.............................................................................................GTTTGATTACATTGTCCGAGATAGCCGTGCGTGTGCAGTAGGATGCAATTTTCAATTTGAGAG.........................................................................................................GTTGATGGAAACTATGAGAGTATTGGGAGATGAGATATGTTATCGAGCCAAAGATT................................................................................ATTTAACCATCCACAAGTTATTTGCCACACGAGCTGATCTACACAGAACTGTTTATACTCACGCTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0236E02-u8qcS/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E416937" ref_strand="+" ref_description="SGN-E416937 [STM-24-G17]">
      <seq>cgagcgtgtgctgtaggatgcaattttcagttcgagaggttgatggaaactatgagggtattgggagatgagatatgctatcgagccaaagattatttaaccatccacaagttatttgccacacgagctgatctacacagaactgtttatactcacgctaaagtgaaggcaatagagcttatgattgtagatgcactagtgaaagcaaatgattatctgcacatatcatcacatatagagcatccttctcaatactggaagttagatgacaccattttaaaaaccatcgagactgctccagacccggaactgaaggaatctagggatttgatccttcgtgttcgaagaagagatttgtaccagttctgtaatgagtatgttgtcccaagagacaaaatagagcatttcaaggatgtcacggcacatgatattgtctgttcgcagaaaagtagcggtgagatacttaatgaagaggatgttgctgtgaccaatgtcaggatagatctgactcgcgggaagcataatccgcttgaaagtatccattttttcaaggattatgaaagtgacgagaagttctctatacctgatgatcgcatcagccacttgctgccatcatcatatcaagatatgattgtgagagtctactccaaaaagccccacctggtggaagctatttctgatgcatttgaaaattttcagttaaagacttatggaataaaagcacaggttcatgcaacacc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0236E02-u8qcS/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0236E02.1" temp_strand="+" temp_description="C02HBa0236E02.1  AC215430.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0236E02 sequenced_by:kribb upload_account_name:korea">
        <position start="78868" stop="81112"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="79168" g_stop="79205" g_length="38"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="38" r_length="38" r_score="0.895"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="79206" i_stop="79310" i_length="105">
            <donor d_prob="0.939" d_score="0.00"/>
            <acceptor a_prob="0.976" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="79311" g_stop="79366" g_length="56"/>
          <reference_exon_boundary r_type="cDNA" r_start="39" r_stop="94" r_length="56" r_score="0.964"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="79367" i_stop="79446" i_length="80">
            <donor d_prob="0.982" d_score="0.96"/>
            <acceptor a_prob="0.993" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="79447" g_stop="79520" g_length="74"/>
          <reference_exon_boundary r_type="cDNA" r_start="95" r_stop="168" r_length="74" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="79521" i_stop="79652" i_length="132">
            <donor d_prob="0.961" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="79653" g_stop="79745" g_length="93"/>
          <reference_exon_boundary r_type="cDNA" r_start="169" r_stop="261" r_length="93" r_score="0.989"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="79746" i_stop="79826" i_length="81">
            <donor d_prob="0.255" d_score="0.98"/>
            <acceptor a_prob="0.978" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="79827" g_stop="79928" g_length="102"/>
          <reference_exon_boundary r_type="cDNA" r_start="262" r_stop="363" r_length="102" r_score="0.980"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="79929" i_stop="80026" i_length="98">
            <donor d_prob="0.873" d_score="0.96"/>
            <acceptor a_prob="0.993" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="80027" g_stop="80107" g_length="81"/>
          <reference_exon_boundary r_type="cDNA" r_start="364" r_stop="444" r_length="81" r_score="0.988"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="80108" i_stop="80177" i_length="70">
            <donor d_prob="0.957" d_score="1.00"/>
            <acceptor a_prob="0.992" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="80178" g_stop="80269" g_length="92"/>
          <reference_exon_boundary r_type="cDNA" r_start="445" r_stop="536" r_length="92" r_score="0.957"/>
        </exon>
        <intron i_serial="7">
          <gDNA_intron_boundary i_start="80270" i_stop="80407" i_length="138">
            <donor d_prob="0.470" d_score="0.96"/>
            <acceptor a_prob="0.434" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="8">
          <gDNA_exon_boundary g_start="80408" g_stop="80423" g_length="16"/>
          <reference_exon_boundary r_type="cDNA" r_start="537" r_stop="552" r_length="16" r_score="1.000"/>
        </exon>
        <intron i_serial="8">
          <gDNA_intron_boundary i_start="80424" i_stop="80532" i_length="109">
            <donor d_prob="0.990" d_score="0.00"/>
            <acceptor a_prob="0.956" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="9">
          <gDNA_exon_boundary g_start="80533" g_stop="80643" g_length="111"/>
          <reference_exon_boundary r_type="cDNA" r_start="553" r_stop="663" r_length="111" r_score="0.991"/>
        </exon>
        <intron i_serial="9">
          <gDNA_intron_boundary i_start="80644" i_stop="80735" i_length="92">
            <donor d_prob="0.408" d_score="1.00"/>
            <acceptor a_prob="0.976" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="10">
          <gDNA_exon_boundary g_start="80736" g_stop="80812" g_length="77"/>
          <reference_exon_boundary r_type="cDNA" r_start="664" r_stop="740" r_length="77" r_score="0.987"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0236E02.1" gen_strand="+" ref_id="SGN-E416937" ref_strand="+">
        <total_alignment_score>0.983</total_alignment_score>
        <cumulative_length_of_scored_exons>740</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0236E02.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E416937" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="79168" e_stop="79205"/>
          <exon e_start="79311" e_stop="79366"/>
          <exon e_start="79447" e_stop="79520"/>
          <exon e_start="79653" e_stop="79745"/>
          <exon e_start="79827" e_stop="79928"/>
          <exon e_start="80027" e_stop="80107"/>
          <exon e_start="80178" e_stop="80269"/>
          <exon e_start="80408" e_stop="80423"/>
          <exon e_start="80533" e_stop="80643"/>
          <exon e_start="80736" e_stop="80812"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CGTGCGTGTGCAGTAGGATGCAATTTTCAATTTGAGAGGTCTTCTCTTTCATCTTTTTGTCTATTGTGAATCGACATCTTTTCACAAATATCGAGAGAAAGGGAAAATAATTCTTTACCGTGAACTGTATTCATTTTCTGTAGGTTGATGGAAACTATGAGAGTATTGGGAGATGAGATATGTTATCGAGCCAAAGATTGTTAGTACTCAACTCTAACCAATATCTTATTTATTTTTGTTTGACTTCTGGTCTTATTATTTGTGTGGATAAATCCTCAGATTTAACCATCCACAAGTTATTTGCCACACGAGCTGATCTACACAGAACTGTTTATACTCACGCTAAAGTGAAGGTACATAGCTAATTTGACGAAGTTGTGCACTGATTTTCTCACCAGCATATCTGAAATGTGGAAGTTATCATTTTGTATGTCATATTTAAGTATGTACACATTTTCAATTTGTTTTCCCATATCATTGTACAGGCAATAGAGCTTATGATTGTAGATGCACTAGTGAAAGCAAATGATTATCTACACATATCATCACATATAGAGCATCCTTCTCAATACTGGAAGGTCGGCATGGTCTTTTTGTTAGCTTCAACCTCCTTAATTCATGGAACCATGAAAATAATTTCTCTGTGTATGTGGAAGTAGTTAGATGACACCATTTTAAAAACCATCGAGACTGCTCCAGACCCGGAACTGAAGGAATCTAGGGATTTGATCCTTCGTGTCCGAAGGAGAGATTTGTACCAGGTACTGAGGTTATCTAATGGGTGTTGATTAAGCAGGTTATATGAGTATTATGGGATGTTTGAAGTTTACGGGTTAATTCTTGTTTTTGCACATTGCAGTTCTGTAATGAGTATGCTGTCCCAAGAGACAAAATAGAGCATTTCAAGGATGTCACGGCACATGATATTGTCTGTTCGCAGGTAGCTAACATATAGTAGTCTGTTTTTGGGAGTCTTTAATATTTCTATGGTAATAATCATTATCTTACAGAAAAGTAGCAGTGAGACACTTAATGAAGAGGATGTTGCTGTGACCAATGTCAGGATAGATCTGACACGCGGGAGGCATAATCCGCTTGAAAGGTTGGTCAAAATGGGTCATCCTATGCAGTTCTTGCACTTGCATGCAATTTCTCTATCCCTCTCCTCCACTTTTATTATCATTCTGAACCTTTCAATTTATTTTCTTTGTATGCTGGTTGGACGTGTTGCCTCTGCCAGTATCCATTTTTTCAAGGTACAGACTATGGGTTCTACAAGTTTGATCATCAAAATCTATTACTTTTCTTGTCTGCATGTTTTTCATCTTTCCCGACCTCACTCTTAATGATTTGATTGAAATTCAGGATTATGAAAGTGAGGAGAAGTTCTCTATACCTGATGATCGCATCAGCCACTTGCTGCCATCATCATATCAAGATATGATTGTGAGAGTCTACTCCAAAAAGCCCCACCTGGTCTGTCCAGATAACGAGTATGCATTTGTTTTTTGCGTTCTTCTCCATCAAAGTCTGATCTCAGTTTTTTTGTATCCTACTCAAATTTTCAGGTGGAAGCTATTTCTGATGCATTTGAAAATTTCCAGTTAAAGACTTATGGAATAAAAGCACAGGTTCATGCAACACC</genome_strand>
        <mrna_strand>CGAGCGTGTGCTGTAGGATGCAATTTTCAGTTCGAGAG.........................................................................................................GTTGATGGAAACTATGAGGGTATTGGGAGATGAGATATGCTATCGAGCCAAAGATT................................................................................ATTTAACCATCCACAAGTTATTTGCCACACGAGCTGATCTACACAGAACTGTTTATACTCACGCTAAAGTGAAG....................................................................................................................................GCAATAGAGCTTATGATTGTAGATGCACTAGTGAAAGCAAATGATTATCTGCACATATCATCACATATAGAGCATCCTTCTCAATACTGGAAG.................................................................................TTAGATGACACCATTTTAAAAACCATCGAGACTGCTCCAGACCCGGAACTGAAGGAATCTAGGGATTTGATCCTTCGTGTTCGAAGAAGAGATTTGTACCAG..................................................................................................TTCTGTAATGAGTATGTTGTCCCAAGAGACAAAATAGAGCATTTCAAGGATGTCACGGCACATGATATTGTCTGTTCGCAG......................................................................AAAAGTAGCGGTGAGATACTTAATGAAGAGGATGTTGCTGTGACCAATGTCAGGATAGATCTGACTCGCGGGAAGCATAATCCGCTTGAAAG..........................................................................................................................................TATCCATTTTTTCAAG.............................................................................................................GATTATGAAAGTGACGAGAAGTTCTCTATACCTGATGATCGCATCAGCCACTTGCTGCCATCATCATATCAAGATATGATTGTGAGAGTCTACTCCAAAAAGCCCCACCTG............................................................................................GTGGAAGCTATTTCTGATGCATTTGAAAATTTTCAGTTAAAGACTTATGGAATAAAAGCACAGGTTCATGCAACACC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0236E02-u8qcS/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E439870" ref_strand="+" ref_description="SGN-E439870 [cSTA-13-L16]">
      <seq>cgagcgtgtgctgtaggatgcaattttcagttcgagaggttgatggaaactatgagggtattgggagatgagatatgctatcgagccaaagattatttaaccatccacaagttatttgccacacgagctgatctacacagaactgtttatactcacgctaaagtgaaggcaatagagcttatgattgtagatgcactagtgaaagcaaatgattatctgcacatatcatcacatatagagcatccttctcaatactggaagttagatgacaccattttaaaaaccatcgagactgctccagacccggaactgaaggaatctagggatttgatccttcgtgttcgaagaagagatttgtaccagttctgtaatgagtatgttgtcccaagagacaaaatagagcatttcaaggatgtcacggcacatgatattgtctgttcgcagaaaagtagcggtgagatacttaatgaagaggatgttgctgtgaccaatgtcaggatagatctgactcgcgggaagcataatccgcttgaaagtatccattttttcaaggattatgaaagtgacgagaagttc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0236E02-u8qcS/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0236E02.1" temp_strand="+" temp_description="C02HBa0236E02.1  AC215430.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0236E02 sequenced_by:kribb upload_account_name:korea">
        <position start="78868" stop="80856"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="79168" g_stop="79205" g_length="38"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="38" r_length="38" r_score="0.895"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="79206" i_stop="79310" i_length="105">
            <donor d_prob="0.939" d_score="0.00"/>
            <acceptor a_prob="0.976" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="79311" g_stop="79366" g_length="56"/>
          <reference_exon_boundary r_type="cDNA" r_start="39" r_stop="94" r_length="56" r_score="0.964"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="79367" i_stop="79446" i_length="80">
            <donor d_prob="0.982" d_score="0.96"/>
            <acceptor a_prob="0.993" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="79447" g_stop="79520" g_length="74"/>
          <reference_exon_boundary r_type="cDNA" r_start="95" r_stop="168" r_length="74" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="79521" i_stop="79652" i_length="132">
            <donor d_prob="0.961" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="79653" g_stop="79745" g_length="93"/>
          <reference_exon_boundary r_type="cDNA" r_start="169" r_stop="261" r_length="93" r_score="0.989"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="79746" i_stop="79826" i_length="81">
            <donor d_prob="0.255" d_score="0.98"/>
            <acceptor a_prob="0.978" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="79827" g_stop="79928" g_length="102"/>
          <reference_exon_boundary r_type="cDNA" r_start="262" r_stop="363" r_length="102" r_score="0.980"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="79929" i_stop="80026" i_length="98">
            <donor d_prob="0.873" d_score="0.96"/>
            <acceptor a_prob="0.993" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="80027" g_stop="80107" g_length="81"/>
          <reference_exon_boundary r_type="cDNA" r_start="364" r_stop="444" r_length="81" r_score="0.988"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="80108" i_stop="80177" i_length="70">
            <donor d_prob="0.957" d_score="1.00"/>
            <acceptor a_prob="0.992" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="80178" g_stop="80269" g_length="92"/>
          <reference_exon_boundary r_type="cDNA" r_start="445" r_stop="536" r_length="92" r_score="0.957"/>
        </exon>
        <intron i_serial="7">
          <gDNA_intron_boundary i_start="80270" i_stop="80407" i_length="138">
            <donor d_prob="0.470" d_score="0.96"/>
            <acceptor a_prob="0.434" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="8">
          <gDNA_exon_boundary g_start="80408" g_stop="80423" g_length="16"/>
          <reference_exon_boundary r_type="cDNA" r_start="537" r_stop="552" r_length="16" r_score="1.000"/>
        </exon>
        <intron i_serial="8">
          <gDNA_intron_boundary i_start="80424" i_stop="80532" i_length="109">
            <donor d_prob="0.990" d_score="0.00"/>
            <acceptor a_prob="0.956" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="9">
          <gDNA_exon_boundary g_start="80533" g_stop="80556" g_length="24"/>
          <reference_exon_boundary r_type="cDNA" r_start="553" r_stop="576" r_length="24" r_score="0.958"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0236E02.1" gen_strand="+" ref_id="SGN-E439870" ref_strand="+">
        <total_alignment_score>0.980</total_alignment_score>
        <cumulative_length_of_scored_exons>576</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0236E02.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E439870" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="79168" e_stop="79205"/>
          <exon e_start="79311" e_stop="79366"/>
          <exon e_start="79447" e_stop="79520"/>
          <exon e_start="79653" e_stop="79745"/>
          <exon e_start="79827" e_stop="79928"/>
          <exon e_start="80027" e_stop="80107"/>
          <exon e_start="80178" e_stop="80269"/>
          <exon e_start="80408" e_stop="80423"/>
          <exon e_start="80533" e_stop="80556"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CGTGCGTGTGCAGTAGGATGCAATTTTCAATTTGAGAGGTCTTCTCTTTCATCTTTTTGTCTATTGTGAATCGACATCTTTTCACAAATATCGAGAGAAAGGGAAAATAATTCTTTACCGTGAACTGTATTCATTTTCTGTAGGTTGATGGAAACTATGAGAGTATTGGGAGATGAGATATGTTATCGAGCCAAAGATTGTTAGTACTCAACTCTAACCAATATCTTATTTATTTTTGTTTGACTTCTGGTCTTATTATTTGTGTGGATAAATCCTCAGATTTAACCATCCACAAGTTATTTGCCACACGAGCTGATCTACACAGAACTGTTTATACTCACGCTAAAGTGAAGGTACATAGCTAATTTGACGAAGTTGTGCACTGATTTTCTCACCAGCATATCTGAAATGTGGAAGTTATCATTTTGTATGTCATATTTAAGTATGTACACATTTTCAATTTGTTTTCCCATATCATTGTACAGGCAATAGAGCTTATGATTGTAGATGCACTAGTGAAAGCAAATGATTATCTACACATATCATCACATATAGAGCATCCTTCTCAATACTGGAAGGTCGGCATGGTCTTTTTGTTAGCTTCAACCTCCTTAATTCATGGAACCATGAAAATAATTTCTCTGTGTATGTGGAAGTAGTTAGATGACACCATTTTAAAAACCATCGAGACTGCTCCAGACCCGGAACTGAAGGAATCTAGGGATTTGATCCTTCGTGTCCGAAGGAGAGATTTGTACCAGGTACTGAGGTTATCTAATGGGTGTTGATTAAGCAGGTTATATGAGTATTATGGGATGTTTGAAGTTTACGGGTTAATTCTTGTTTTTGCACATTGCAGTTCTGTAATGAGTATGCTGTCCCAAGAGACAAAATAGAGCATTTCAAGGATGTCACGGCACATGATATTGTCTGTTCGCAGGTAGCTAACATATAGTAGTCTGTTTTTGGGAGTCTTTAATATTTCTATGGTAATAATCATTATCTTACAGAAAAGTAGCAGTGAGACACTTAATGAAGAGGATGTTGCTGTGACCAATGTCAGGATAGATCTGACACGCGGGAGGCATAATCCGCTTGAAAGGTTGGTCAAAATGGGTCATCCTATGCAGTTCTTGCACTTGCATGCAATTTCTCTATCCCTCTCCTCCACTTTTATTATCATTCTGAACCTTTCAATTTATTTTCTTTGTATGCTGGTTGGACGTGTTGCCTCTGCCAGTATCCATTTTTTCAAGGTACAGACTATGGGTTCTACAAGTTTGATCATCAAAATCTATTACTTTTCTTGTCTGCATGTTTTTCATCTTTCCCGACCTCACTCTTAATGATTTGATTGAAATTCAGGATTATGAAAGTGAGGAGAAGTTC</genome_strand>
        <mrna_strand>CGAGCGTGTGCTGTAGGATGCAATTTTCAGTTCGAGAG.........................................................................................................GTTGATGGAAACTATGAGGGTATTGGGAGATGAGATATGCTATCGAGCCAAAGATT................................................................................ATTTAACCATCCACAAGTTATTTGCCACACGAGCTGATCTACACAGAACTGTTTATACTCACGCTAAAGTGAAG....................................................................................................................................GCAATAGAGCTTATGATTGTAGATGCACTAGTGAAAGCAAATGATTATCTGCACATATCATCACATATAGAGCATCCTTCTCAATACTGGAAG.................................................................................TTAGATGACACCATTTTAAAAACCATCGAGACTGCTCCAGACCCGGAACTGAAGGAATCTAGGGATTTGATCCTTCGTGTTCGAAGAAGAGATTTGTACCAG..................................................................................................TTCTGTAATGAGTATGTTGTCCCAAGAGACAAAATAGAGCATTTCAAGGATGTCACGGCACATGATATTGTCTGTTCGCAG......................................................................AAAAGTAGCGGTGAGATACTTAATGAAGAGGATGTTGCTGTGACCAATGTCAGGATAGATCTGACTCGCGGGAAGCATAATCCGCTTGAAAG..........................................................................................................................................TATCCATTTTTTCAAG.............................................................................................................GATTATGAAAGTGACGAGAAGTTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0236E02-u8qcS/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E323877" ref_strand="+" ref_description="SGN-E323877 [cTOC-5-J12]">
      <seq>ggagatgagatatgttatcgagccaaagattatttaaccatccacaagttatttgccacacgagctgatctacacagaactgtttatactcacgctaaagtgaaggcaatagagcttatgattgtagatgcactagtgaaagcaaatgattatctacacatatcatcacatatagagcatccttctcaatactggaaggtcggcatggtctttttgttagcttcaacctccttaattcatggaaccatgaaaataatttctctgtgtatgtggaagtagatagatgacaccattttaaaaaccatcgagactgctccagacccggaactgaaggaatctagggatttgatccttcgtgtccgaaggagagatttgtaccagttctgtaatgagtatgctgtcccaagagacaaaatagagcatttcaaggatgtcacggcacatgatattgtctgttcgcagaaaagtagcagtgagacacttaat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0236E02-u8qcS/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0236E02.1" temp_strand="+" temp_description="C02HBa0236E02.1  AC215430.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0236E02 sequenced_by:kribb upload_account_name:korea">
        <position start="79036" stop="80421"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="79336" g_stop="79366" g_length="31"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="31" r_length="31" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="79367" i_stop="79446" i_length="80">
            <donor d_prob="0.982" d_score="0.00"/>
            <acceptor a_prob="0.993" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="79447" g_stop="79520" g_length="74"/>
          <reference_exon_boundary r_type="cDNA" r_start="32" r_stop="105" r_length="74" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="79521" i_stop="79652" i_length="132">
            <donor d_prob="0.961" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="79653" g_stop="79928" g_length="276"/>
          <reference_exon_boundary r_type="cDNA" r_start="106" r_stop="381" r_length="276" r_score="0.996"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="79929" i_stop="80026" i_length="98">
            <donor d_prob="0.873" d_score="1.00"/>
            <acceptor a_prob="0.993" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="80027" g_stop="80107" g_length="81"/>
          <reference_exon_boundary r_type="cDNA" r_start="382" r_stop="462" r_length="81" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="80108" i_stop="80177" i_length="70">
            <donor d_prob="0.957" d_score="1.00"/>
            <acceptor a_prob="0.992" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="80178" g_stop="80201" g_length="24"/>
          <reference_exon_boundary r_type="cDNA" r_start="463" r_stop="486" r_length="24" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0236E02.1" gen_strand="+" ref_id="SGN-E323877" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>486</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0236E02.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E323877" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="79336" e_stop="79366"/>
          <exon e_start="79447" e_stop="79520"/>
          <exon e_start="79653" e_stop="79928"/>
          <exon e_start="80027" e_stop="80107"/>
          <exon e_start="80178" e_stop="80201"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGAGATGAGATATGTTATCGAGCCAAAGATTGTTAGTACTCAACTCTAACCAATATCTTATTTATTTTTGTTTGACTTCTGGTCTTATTATTTGTGTGGATAAATCCTCAGATTTAACCATCCACAAGTTATTTGCCACACGAGCTGATCTACACAGAACTGTTTATACTCACGCTAAAGTGAAGGTACATAGCTAATTTGACGAAGTTGTGCACTGATTTTCTCACCAGCATATCTGAAATGTGGAAGTTATCATTTTGTATGTCATATTTAAGTATGTACACATTTTCAATTTGTTTTCCCATATCATTGTACAGGCAATAGAGCTTATGATTGTAGATGCACTAGTGAAAGCAAATGATTATCTACACATATCATCACATATAGAGCATCCTTCTCAATACTGGAAGGTCGGCATGGTCTTTTTGTTAGCTTCAACCTCCTTAATTCATGGAACCATGAAAATAATTTCTCTGTGTATGTGGAAGTAGTTAGATGACACCATTTTAAAAACCATCGAGACTGCTCCAGACCCGGAACTGAAGGAATCTAGGGATTTGATCCTTCGTGTCCGAAGGAGAGATTTGTACCAGGTACTGAGGTTATCTAATGGGTGTTGATTAAGCAGGTTATATGAGTATTATGGGATGTTTGAAGTTTACGGGTTAATTCTTGTTTTTGCACATTGCAGTTCTGTAATGAGTATGCTGTCCCAAGAGACAAAATAGAGCATTTCAAGGATGTCACGGCACATGATATTGTCTGTTCGCAGGTAGCTAACATATAGTAGTCTGTTTTTGGGAGTCTTTAATATTTCTATGGTAATAATCATTATCTTACAGAAAAGTAGCAGTGAGACACTTAAT</genome_strand>
        <mrna_strand>GGAGATGAGATATGTTATCGAGCCAAAGATT................................................................................ATTTAACCATCCACAAGTTATTTGCCACACGAGCTGATCTACACAGAACTGTTTATACTCACGCTAAAGTGAAG....................................................................................................................................GCAATAGAGCTTATGATTGTAGATGCACTAGTGAAAGCAAATGATTATCTACACATATCATCACATATAGAGCATCCTTCTCAATACTGGAAGGTCGGCATGGTCTTTTTGTTAGCTTCAACCTCCTTAATTCATGGAACCATGAAAATAATTTCTCTGTGTATGTGGAAGTAGATAGATGACACCATTTTAAAAACCATCGAGACTGCTCCAGACCCGGAACTGAAGGAATCTAGGGATTTGATCCTTCGTGTCCGAAGGAGAGATTTGTACCAG..................................................................................................TTCTGTAATGAGTATGCTGTCCCAAGAGACAAAATAGAGCATTTCAAGGATGTCACGGCACATGATATTGTCTGTTCGCAG......................................................................AAAAGTAGCAGTGAGACACTTAAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0236E02-u8qcS/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E288496" ref_strand="+" ref_description="SGN-E288496 [cLES-8-M18]">
      <seq>ttatactcacgctaaagagaaggcaatagagcttatgattgtagatgcactagtgaaagcaaatgattatctacacatatcatcacatatagagcatccttctcaatactggaagtaagatgacaccattttaaaaaccatcgagactgctccagacccggaactgaaggaatctagggattagatccttcgtgtccgaaggagagaaatgtaccagttctgaaatgagtatgctgtcccaagagacaaaaaagagcatgtcaagg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0236E02-u8qcS/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0236E02.1" temp_strand="+" temp_description="C02HBa0236E02.1  AC215430.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0236E02 sequenced_by:kribb upload_account_name:korea">
        <position start="79199" stop="80375"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="79499" g_stop="79520" g_length="22"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="22" r_length="22" r_score="0.955"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="79521" i_stop="79652" i_length="132">
            <donor d_prob="0.961" d_score="0.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="79653" g_stop="79745" g_length="93"/>
          <reference_exon_boundary r_type="cDNA" r_start="23" r_stop="115" r_length="93" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="79746" i_stop="79826" i_length="81">
            <donor d_prob="0.255" d_score="1.00"/>
            <acceptor a_prob="0.978" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="79827" g_stop="79928" g_length="102"/>
          <reference_exon_boundary r_type="cDNA" r_start="116" r_stop="217" r_length="102" r_score="0.961"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="79929" i_stop="80026" i_length="98">
            <donor d_prob="0.873" d_score="0.94"/>
            <acceptor a_prob="0.993" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="80027" g_stop="80075" g_length="49"/>
          <reference_exon_boundary r_type="cDNA" r_start="218" r_stop="266" r_length="49" r_score="0.939"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0236E02.1" gen_strand="+" ref_id="SGN-E288496" ref_strand="+">
        <total_alignment_score>0.979</total_alignment_score>
        <cumulative_length_of_scored_exons>266</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0236E02.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E288496" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="79499" e_stop="79520"/>
          <exon e_start="79653" e_stop="79745"/>
          <exon e_start="79827" e_stop="79928"/>
          <exon e_start="80027" e_stop="80075"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTATACTCACGCTAAAGTGAAGGTACATAGCTAATTTGACGAAGTTGTGCACTGATTTTCTCACCAGCATATCTGAAATGTGGAAGTTATCATTTTGTATGTCATATTTAAGTATGTACACATTTTCAATTTGTTTTCCCATATCATTGTACAGGCAATAGAGCTTATGATTGTAGATGCACTAGTGAAAGCAAATGATTATCTACACATATCATCACATATAGAGCATCCTTCTCAATACTGGAAGGTCGGCATGGTCTTTTTGTTAGCTTCAACCTCCTTAATTCATGGAACCATGAAAATAATTTCTCTGTGTATGTGGAAGTAGTTAGATGACACCATTTTAAAAACCATCGAGACTGCTCCAGACCCGGAACTGAAGGAATCTAGGGATTTGATCCTTCGTGTCCGAAGGAGAGATTTGTACCAGGTACTGAGGTTATCTAATGGGTGTTGATTAAGCAGGTTATATGAGTATTATGGGATGTTTGAAGTTTACGGGTTAATTCTTGTTTTTGCACATTGCAGTTCTGTAATGAGTATGCTGTCCCAAGAGACAAAATAGAGCATTTCAAGG</genome_strand>
        <mrna_strand>TTATACTCACGCTAAAGAGAAG....................................................................................................................................GCAATAGAGCTTATGATTGTAGATGCACTAGTGAAAGCAAATGATTATCTACACATATCATCACATATAGAGCATCCTTCTCAATACTGGAAG.................................................................................TAAGATGACACCATTTTAAAAACCATCGAGACTGCTCCAGACCCGGAACTGAAGGAATCTAGGGATTAGATCCTTCGTGTCCGAAGGAGAGAAATGTACCAG..................................................................................................TTCTGAAATGAGTATGCTGTCCCAAGAGACAAAAAAGAGCATGTCAAGG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0236E02-u8qcS/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E538230" ref_strand="+" ref_description="SGN-E538230 [TUS-57-E12](-)">
      <seq>cgaaggagagatttgtcccagttctgtaatgagtatgctgtcccaagagacaaaatagagcatttcaaggatgtcacggcacatgatattgtctgttcgcagaaaagtagcagtgagacacttaatgaagaggatgttgctgtgaccaatgtcaggatagatctgacacgcgggaggcataatccgcttgaaagtatccattttttcaaggattatgaaagtgaggagaagttctctatacctgatgatcgcatcagccacttgctgccatcatcatatcaagatatgattgtgagagtctactccaaaaagccccacctggtggaagctatttctgatgcatttgaaaatttccagttaaagacttatggaataaaagcacaggttcatgcaacacctgagaagaaaaaacgccgtgtatgatatttccccagtcatcactacaaaatccacagtagatatatgtgattatagtatatctcaagcaacatattacagtccatttgtacagaagtctttaaatgacacgtgaaaggcctctcaagagttatactagagtttttgtagaaagttgctaccatttactggatatgataatatcctccgagtactctcaacaatttcttgtatcctagcattactcgaaaaatggatttcttggtataaccgacttctgaatattacagaagctgatgcttttataaaaaaaaaaaaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0236E02-u8qcS/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0236E02.1" temp_strand="+" temp_description="C02HBa0236E02.1  AC215430.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0236E02 sequenced_by:kribb upload_account_name:korea">
        <position start="79608" stop="95703"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="79908" g_stop="79928" g_length="21"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="21" r_length="21" r_score="0.952"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="79929" i_stop="80026" i_length="98">
            <donor d_prob="0.873" d_score="0.00"/>
            <acceptor a_prob="0.993" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="80027" g_stop="80107" g_length="81"/>
          <reference_exon_boundary r_type="cDNA" r_start="22" r_stop="102" r_length="81" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="80108" i_stop="80177" i_length="70">
            <donor d_prob="0.957" d_score="1.00"/>
            <acceptor a_prob="0.992" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="80178" g_stop="80269" g_length="92"/>
          <reference_exon_boundary r_type="cDNA" r_start="103" r_stop="194" r_length="92" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="80270" i_stop="80407" i_length="138">
            <donor d_prob="0.470" d_score="1.00"/>
            <acceptor a_prob="0.434" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="80408" g_stop="80423" g_length="16"/>
          <reference_exon_boundary r_type="cDNA" r_start="195" r_stop="210" r_length="16" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="80424" i_stop="80532" i_length="109">
            <donor d_prob="0.990" d_score="0.00"/>
            <acceptor a_prob="0.956" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="80533" g_stop="80643" g_length="111"/>
          <reference_exon_boundary r_type="cDNA" r_start="211" r_stop="321" r_length="111" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="80644" i_stop="80735" i_length="92">
            <donor d_prob="0.408" d_score="1.00"/>
            <acceptor a_prob="0.976" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="80736" g_stop="81118" g_length="383"/>
          <reference_exon_boundary r_type="cDNA" r_start="322" r_stop="704" r_length="383" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="81119" i_stop="81486" i_length="368">
            <donor d_prob="0.000" d_score="1.00"/>
            <acceptor a_prob="0.000" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="81487" g_stop="81514" g_length="28"/>
          <reference_exon_boundary r_type="cDNA" r_start="705" r_stop="732" r_length="28" r_score="0.786"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0236E02.1" gen_strand="+" ref_id="SGN-E538230" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>732</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0236E02.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E538230" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="79908" e_stop="79928"/>
          <exon e_start="80027" e_stop="80107"/>
          <exon e_start="80178" e_stop="80269"/>
          <exon e_start="80408" e_stop="80423"/>
          <exon e_start="80533" e_stop="80643"/>
          <exon e_start="80736" e_stop="81118"/>
          <exon e_start="81487" e_stop="81514"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CGAAGGAGAGATTTGTACCAGGTACTGAGGTTATCTAATGGGTGTTGATTAAGCAGGTTATATGAGTATTATGGGATGTTTGAAGTTTACGGGTTAATTCTTGTTTTTGCACATTGCAGTTCTGTAATGAGTATGCTGTCCCAAGAGACAAAATAGAGCATTTCAAGGATGTCACGGCACATGATATTGTCTGTTCGCAGGTAGCTAACATATAGTAGTCTGTTTTTGGGAGTCTTTAATATTTCTATGGTAATAATCATTATCTTACAGAAAAGTAGCAGTGAGACACTTAATGAAGAGGATGTTGCTGTGACCAATGTCAGGATAGATCTGACACGCGGGAGGCATAATCCGCTTGAAAGGTTGGTCAAAATGGGTCATCCTATGCAGTTCTTGCACTTGCATGCAATTTCTCTATCCCTCTCCTCCACTTTTATTATCATTCTGAACCTTTCAATTTATTTTCTTTGTATGCTGGTTGGACGTGTTGCCTCTGCCAGTATCCATTTTTTCAAGGTACAGACTATGGGTTCTACAAGTTTGATCATCAAAATCTATTACTTTTCTTGTCTGCATGTTTTTCATCTTTCCCGACCTCACTCTTAATGATTTGATTGAAATTCAGGATTATGAAAGTGAGGAGAAGTTCTCTATACCTGATGATCGCATCAGCCACTTGCTGCCATCATCATATCAAGATATGATTGTGAGAGTCTACTCCAAAAAGCCCCACCTGGTCTGTCCAGATAACGAGTATGCATTTGTTTTTTGCGTTCTTCTCCATCAAAGTCTGATCTCAGTTTTTTTGTATCCTACTCAAATTTTCAGGTGGAAGCTATTTCTGATGCATTTGAAAATTTCCAGTTAAAGACTTATGGAATAAAAGCACAGGTTCATGCAACACCTGAGAAGAAAAAACGCCGTGTATGATATTTCCCCAGTCATCACTACAAAATCCACAGTAGATATATGTGATTATAGTATATCTCAAGCAACATATTACAGTCCATTTGTACAGAAGTCTTTAAATGACACGTGAAAGGCCTCTCAAGAGTTATACTAGAGTTTTTGTAGAAAGTTGCTACCATTTACTGGATATGATAATATCCTCCGAGTACTCTCAACAATTTCTTGTATCCTAGCATTACTCGAAAAATGGATTTCTTGGTATAACCGACTTCTGAATATTACAGAAGCTGATGCTTTTATAATACCTTCTCTTTCTACTTGGTGGTTGGTGAATGAATATATGTTAAGAGGATTTGATGTAGCTAAAGTTTGTTTATGTGCTGGTTTTTGAAGGAAAGAGCAACAGTTCTATTCATGATGAGTACCATCTATGAAAATAAAGTTGCAACTGCGAAAGGTAACTAAAACTCTGAGATTCATAACTTAGTGTTGTAGCAAGAAGCAATATTTGATGGAGGTTACGTATATTCTTGGCATTCTTTTATTTCTGCCGCATATAGAAAAGTATTCATCTCTATACTCGGTTATATTGTTTTTTTTATCTTCTTCGCTTCCTTATTTTTTCAGGGTTTTATAATTGTTGATCCTTCTAGATTCAGAATCCATTTTGATAAAAAGAAAAAAAAAAACAAATTGAA</genome_strand>
        <mrna_strand>CGAAGGAGAGATTTGTCCCAG..................................................................................................TTCTGTAATGAGTATGCTGTCCCAAGAGACAAAATAGAGCATTTCAAGGATGTCACGGCACATGATATTGTCTGTTCGCAG......................................................................AAAAGTAGCAGTGAGACACTTAATGAAGAGGATGTTGCTGTGACCAATGTCAGGATAGATCTGACACGCGGGAGGCATAATCCGCTTGAAAG..........................................................................................................................................TATCCATTTTTTCAAG.............................................................................................................GATTATGAAAGTGAGGAGAAGTTCTCTATACCTGATGATCGCATCAGCCACTTGCTGCCATCATCATATCAAGATATGATTGTGAGAGTCTACTCCAAAAAGCCCCACCTG............................................................................................GTGGAAGCTATTTCTGATGCATTTGAAAATTTCCAGTTAAAGACTTATGGAATAAAAGCACAGGTTCATGCAACACCTGAGAAGAAAAAACGCCGTGTATGATATTTCCCCAGTCATCACTACAAAATCCACAGTAGATATATGTGATTATAGTATATCTCAAGCAACATATTACAGTCCATTTGTACAGAAGTCTTTAAATGACACGTGAAAGGCCTCTCAAGAGTTATACTAGAGTTTTTGTAGAAAGTTGCTACCATTTACTGGATATGATAATATCCTCCGAGTACTCTCAACAATTTCTTGTATCCTAGCATTACTCGAAAAATGGATTTCTTGGTATAACCGACTTCTGAATATTACAGAAGCTGATGCTTTTATAA................................................................................................................................................................................................................................................................................................................................................................................AAAAAAAAAAAAAAAAAAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0236E02-u8qcS/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E414044" ref_strand="-" ref_description="SGN-E414044 [STM-18-H18]">
      <seq>aagaggatgttgctgtgaccaatgtcaggatagatctgactcgcgggaggcataatccgcttgaaaggatccattttttcaaggattatgaaagtgacgataagttctctatacctgatgatcgcatcagccacttgctgccatcatcatatcaagatatgattgtgagagtctactccaaaaagccccacctggtggaagctatttctgatgcatttgaaaatttccagttaaagacttatggaataaaagcacaggttcatgcaacaccggagaagaaaaaacgccgtgtatgatatttcccccagtcatcactacaaaatatattctacagtaggtatatttggttatagtatatctcaagcaacatattacagccaatttgtacagaagtctttaaatgacacgtgaaagggctctcaagagttgtactagagtttttgtagaaagttgctaccatttactggatatgataatatcctcccagtattctcaacaattttctgtatcctagcacaaaaaatggattcttggtatgaccgacttctgaatattgcagaagctcatgcttccgtaataccttctctttctactcggtggttggtgaatgaatatatatgttaagaggatttgatgtacctgaagtttggagaatgcttagttttgaaagaaaaaaagatttg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0236E02-u8qcS/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0236E02.1" temp_strand="+" temp_description="C02HBa0236E02.1  AC215430.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0236E02 sequenced_by:kribb upload_account_name:korea">
        <position start="79903" stop="81488"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="80203" g_stop="80269" g_length="67"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="67" r_length="67" r_score="0.985"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="80270" i_stop="80407" i_length="138">
            <donor d_prob="0.470" d_score="0.98"/>
            <acceptor a_prob="0.434" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="80408" g_stop="80423" g_length="16"/>
          <reference_exon_boundary r_type="cDNA" r_start="68" r_stop="83" r_length="16" r_score="0.938"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="80424" i_stop="80532" i_length="109">
            <donor d_prob="0.990" d_score="0.00"/>
            <acceptor a_prob="0.956" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="80533" g_stop="80643" g_length="111"/>
          <reference_exon_boundary r_type="cDNA" r_start="84" r_stop="194" r_length="111" r_score="0.982"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="80644" i_stop="80735" i_length="92">
            <donor d_prob="0.408" d_score="1.00"/>
            <acceptor a_prob="0.976" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="80736" g_stop="81225" g_length="490"/>
          <reference_exon_boundary r_type="cDNA" r_start="195" r_stop="683" r_length="489" r_score="0.878"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0236E02.1" gen_strand="+" ref_id="SGN-E414044" ref_strand="-">
        <total_alignment_score>0.906</total_alignment_score>
        <cumulative_length_of_scored_exons>684</cumulative_length_of_scored_exons>
        <coverage percentage="1.001" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0236E02.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E414044" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="80203" e_stop="80269"/>
          <exon e_start="80408" e_stop="80423"/>
          <exon e_start="80533" e_stop="80643"/>
          <exon e_start="80736" e_stop="81225"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAGAGGATGTTGCTGTGACCAATGTCAGGATAGATCTGACACGCGGGAGGCATAATCCGCTTGAAAGGTTGGTCAAAATGGGTCATCCTATGCAGTTCTTGCACTTGCATGCAATTTCTCTATCCCTCTCCTCCACTTTTATTATCATTCTGAACCTTTCAATTTATTTTCTTTGTATGCTGGTTGGACGTGTTGCCTCTGCCAGTATCCATTTTTTCAAGGTACAGACTATGGGTTCTACAAGTTTGATCATCAAAATCTATTACTTTTCTTGTCTGCATGTTTTTCATCTTTCCCGACCTCACTCTTAATGATTTGATTGAAATTCAGGATTATGAAAGTGAGGAGAAGTTCTCTATACCTGATGATCGCATCAGCCACTTGCTGCCATCATCATATCAAGATATGATTGTGAGAGTCTACTCCAAAAAGCCCCACCTGGTCTGTCCAGATAACGAGTATGCATTTGTTTTTTGCGTTCTTCTCCATCAAAGTCTGATCTCAGTTTTTTTGTATCCTACTCAAATTTTCAGGTGGAAGCTATTTCTGATGCATTTGAAAATTTCCAGTTAAAGACTTATGGAATAAAAGCACAGGTTCATGCAACACCTGAGAAGAAAAAACGCCGTGTATGATATTT-CCCCAGTCATCACTACAAAA-----TCCACAGTAGATATATGTGATTATAGTATATCTCAAGCAACATATTACAGTCCATTTGTACAGAAGTCTTTAAATGACACGTGAAAGGCCTCTCAAGAGTTATACTAGAGTTTTTGTAGAAAGTTGCTACCATTTACTGGATATGATAATATCCTCCGAGTACTCTCAACAATTTCTTGTATCCTAGCATTACTCGAAAAATGGATTTCTTGGTATAACCGACTTCTGAATATTACAGAAGCTGATGCTTTTATAATACCTTCTCTTTCTACTTGGTGGTTGGTGAATG-A-ATATATGTTAAGAGGATTTGATGTAGCTAAAGTTTGTTTATGTGCTGGTTTTTGAAGGAAAGAGCAACAGTTC</genome_strand>
        <mrna_strand>AAGAGGATGTTGCTGTGACCAATGTCAGGATAGATCTGACTCGCGGGAGGCATAATCCGCTTGAAAG..........................................................................................................................................GATCCATTTTTTCAAG.............................................................................................................GATTATGAAAGTGACGATAAGTTCTCTATACCTGATGATCGCATCAGCCACTTGCTGCCATCATCATATCAAGATATGATTGTGAGAGTCTACTCCAAAAAGCCCCACCTG............................................................................................GTGGAAGCTATTTCTGATGCATTTGAAAATTTCCAGTTAAAGACTTATGGAATAAAAGCACAGGTTCATGCAACACCGGAGAAGAAAAAACGCCGTGTATGATATTTCCCCCAGTCATCACTACAAAATATATTCTACAGTAGGTATATTTGGTTATAGTATATCTCAAGCAACATATTACAGCCAATTTGTACAGAAGTCTTTAAATGACACGTGAAAGGGCTCTCAAGAGTTGTACTAGAGTTTTTGTAGAAAGTTGCTACCATTTACTGGATATGATAATATCCTCCCAGTATTCTCAACAATTTTCTGTATCCTAGC---A--CAAAAAATGGA-TTCTTGGTATGACCGACTTCTGAATATTGCAGAAGCTCATGCTTCCGTAATACCTTCTCTTTCTACTCGGTGGTTGGTGAATGAATATATATGTTAAGAGGATTTGATGTACCTGAAGTTTGGAGA-ATGCTTAGTTTTGAAAGAAA-A-AAAGATTTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0236E02-u8qcS/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E412942" ref_strand="-" ref_description="SGN-E412942 [STM-17-G3]">
      <seq>agagattatggtggttggtgaaaaagcaccattctatggagaaactttagaagatcttggtctatacaaggctcaaacaagactacctttcaatgcttttggaacaatggccatggctagagaagaatttgagaataactctgcctcaagtcaggtgttttggctgttgaaagaaagtgaactgactcctagcaacgccaatatattggatggtcgatatgctgtgtttggttatgtgacagaaaatgaggactttttggcagaatctgaaggtgggagatgtgatagaatcaatacaagttgtatctggcctcgataatcttgtgaatccaagctacaagattgctggttagagatgtcatttaagtgaggaattatcggaattaagacctgcattgagttgttcacgatactctgtgaagagtataatcattattttcatcatatattcaacaatttcagtttcttgcttttgaaatatcatgtataaaaagaacccccggattaggccaaaaaagtttat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0236E02-u8qcS/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0236E02.1" temp_strand="-" temp_description="C02HBa0236E02.1  AC215430.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0236E02 sequenced_by:kribb upload_account_name:korea">
        <position start="83453" stop="81738"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="83153" g_stop="83102" g_length="52"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="52" r_length="52" r_score="0.962"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="83101" i_stop="82577" i_length="525">
            <donor d_prob="0.993" d_score="0.96"/>
            <acceptor a_prob="0.991" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="82576" g_stop="82505" g_length="72"/>
          <reference_exon_boundary r_type="cDNA" r_start="53" r_stop="124" r_length="72" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="82504" i_stop="82403" i_length="102">
            <donor d_prob="0.987" d_score="1.00"/>
            <acceptor a_prob="0.968" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="82402" g_stop="82042" g_length="361"/>
          <reference_exon_boundary r_type="cDNA" r_start="125" r_stop="482" r_length="358" r_score="0.970"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0236E02.1" gen_strand="-" ref_id="SGN-E412942" ref_strand="-">
        <total_alignment_score>0.973</total_alignment_score>
        <cumulative_length_of_scored_exons>485</cumulative_length_of_scored_exons>
        <coverage percentage="0.927" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0236E02.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E412942" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="83153" e_stop="83102"/>
          <exon e_start="82576" e_stop="82505"/>
          <exon e_start="82402" e_stop="82042"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGAGATTATGGTGGTTGGTGAAAAAGCACCATTCTACGGAGAAACTTTGGAAGTAAGTTCATGTTATTGTCATTTTGCTGCCTCTAAATTTAACTTTTTGGTGTCCTACTCCTGATCACTTCTCTCCAATTGCTCAGTAGAAGCTATAAACAGTATAAGAGTAGACGTTGTCAGCCAGGCTATCATATATGGATTATACATTTATACCCAGTTTATTGAGATGGTCTTAGAAATTACCATAGACCTGTAATTGTGGAGAGAAAGATCACTTGCCCCAGCATTTGGGCCATTGGCATGCCTGCTCTTGCATAGATCTCACTCCTCAATTCATCCATAGAGTAGGACTCCATGTTGAGAAATGGATTTATATTCCCTCAGCACTAAACTTTCCCTACTTACGCCATCACAGATTCACAGCCTTAAACAAGAAAATTCTCCGTTATACTAAACCAGCGAAAATGTTTCTGATACACTCAACAAAGGTTTCATATTTGCCTTTATCATGGTATTCTTCTCTTCACTTTATATTCCTTGTTATTCCTTCTGTTTTAATAAGGCTCTGGAATTATTTCTACAGGATCTTGGTCTATACAAGGCTCAAACAAGACTACCTTTCAATGCTTTTGGAACAATGGCCATGGCTAGAGAAGTGAGATACCTTTACTTTTGATGTTGCATCTGCTTATTTCATGTAACTTTATTTGATGACCTTTATATTTGTTAAAACTCATTGGATTATGGGCGCTTACAGGAATTTGAGAATAACTCTGCCTCAAGTCAGGTGTTTTGGTTGTTGAAAGAAAGTGAACTGACTCCTAGCAACGCCAATATATTGGATGGTCGATATGCTGTGTTTGGTTATGTGACAGAAAATGAGGACTTTCTGGCAG-ATCTGAAGGTGGGAGATGTGATAGAATCAATACAAGTTGTATCTGGCCTCGATAATCTTGTGAATCCAAGCTACAAGATTGCTGGTTAGAGATGTCGTTTAAGTGAGGAATTATCGGAATTAAGACCTACCTGCATTGAGTTGTTCACGAAACTCTCTGAAGAGTATAATCATTATTTTCATCATATATTCAACAATTTCAGTTTCTTGCTTTTGAAATATC</genome_strand>
        <mrna_strand>AGAGATTATGGTGGTTGGTGAAAAAGCACCATTCTATGGAGAAACTTTAGAA.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATCTTGGTCTATACAAGGCTCAAACAAGACTACCTTTCAATGCTTTTGGAACAATGGCCATGGCTAGAGAA......................................................................................................GAATTTGAGAATAACTCTGCCTCAAGTCAGGTGTTTTGGCTGTTGAAAGAAAGTGAACTGACTCCTAGCAACGCCAATATATTGGATGGTCGATATGCTGTGTTTGGTTATGTGACAGAAAATGAGGACTTTTTGGCAGAATCTGAAGGTGGGAGATGTGATAGAATCAATACAAGTTGTATCTGGCCTCGATAATCTTGTGAATCCAAGCTACAAGATTGCTGGTTAGAGATGTCATTTAAGTGAGGAATTATCGGAATTAAG----ACCTGCATTGAGTTGTTCACGATACTCTGTGAAGAGTATAATCATTATTTTCATCATATATTCAACAATTTCAGTTTCTTGCTTTTGAAATATC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0236E02-u8qcS/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E287750" ref_strand="+" ref_description="SGN-E287750 [cLES-9-P20]">
      <seq>ggatatgaaggtcaaagtcaaagacaatcccaacctggaggaatgcgtatttcgtattgttctagatggatataatgctccagttactgctggaaattttatagacttggtcgagaggcatttctatgatggcatggatattcaaagagcggatggatttgtggtacaaacaggagatcctgaaggtccagctgaaggttttattgaccccagtacagagaaaacccggacagtacctctagagattatggtggttggtgaaaaagcaccattctacggagaaactttggaagatcttggtctatacaaggctcaaacaagactacctttcaatgcttttggaacaatggccatggctagagaagaatttgagaataactctgcctcaagtcaggtgttttggttgctgaaagaaagtgaactgactcctagcaacgccaatatattggatggtcgatatgctgtgttt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0236E02-u8qcS/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0236E02.1" temp_strand="-" temp_description="C02HBa0236E02.1  AC215430.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0236E02 sequenced_by:kribb upload_account_name:korea">
        <position start="84078" stop="81998"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="83778" g_stop="83630" g_length="149"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="149" r_length="149" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="83629" i_stop="83245" i_length="385">
            <donor d_prob="0.971" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="83244" g_stop="83102" g_length="143"/>
          <reference_exon_boundary r_type="cDNA" r_start="150" r_stop="292" r_length="143" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="83101" i_stop="82577" i_length="525">
            <donor d_prob="0.993" d_score="1.00"/>
            <acceptor a_prob="0.991" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="82576" g_stop="82505" g_length="72"/>
          <reference_exon_boundary r_type="cDNA" r_start="293" r_stop="364" r_length="72" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="82504" i_stop="82403" i_length="102">
            <donor d_prob="0.987" d_score="1.00"/>
            <acceptor a_prob="0.968" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="82402" g_stop="82298" g_length="105"/>
          <reference_exon_boundary r_type="cDNA" r_start="365" r_stop="469" r_length="105" r_score="0.990"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0236E02.1" gen_strand="-" ref_id="SGN-E287750" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>469</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0236E02.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E287750" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="83778" e_stop="83630"/>
          <exon e_start="83244" e_stop="83102"/>
          <exon e_start="82576" e_stop="82505"/>
          <exon e_start="82402" e_stop="82298"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGATATGAAGGTCAAAGTCAAAGACAATCCCAACCTGGAGGAATGCGTATTTCGTATTGTTCTAGATGGATATAATGCTCCAGTTACTGCTGGAAATTTTATAGACTTGGTCGAGAGGCATTTCTATGATGGCATGGATATTCAAAGAGGTGAGCTTATGATTTTTGCTCTGTTCTTGCGAATCAATGAAACAAATAAAACTGTCTATGCATCAAACAAGGAATGTTGTCCGTGTATGGTCCAGTGGTTTGAGCTTGGAATTTCCATGTTGGAGGTCTCAAGTTCGAAACCCCTTGCCAGCAAAGCAAGGGGTTTGCCTTCTGGGTCGAGCTCGTTGCACCAGGCTTGCCTAGTGCGGGTTACCTCTCTTATGTGGTTTGCGAGCTATTGCATAGGAGCGGAGTTTTACCCTGTGCGCACCCAAAAGGGTAGCGGCTGCGGGTTTCCCTTGTCGTGTAAAAAAAAAAAAGGGATGTCCGTGTAGTTTGTGACCTGAATATGTTCTTGAAACTCATTATTGTGGATGTTCTGCAGCGGATGGATTTGTGGTACAAACAGGAGATCCTGAAGGTCCAGCTGAAGGTTTTATTGACCCCAGTACAGAGAAAACCCGGACAGTACCTCTAGAGATTATGGTGGTTGGTGAAAAAGCACCATTCTACGGAGAAACTTTGGAAGTAAGTTCATGTTATTGTCATTTTGCTGCCTCTAAATTTAACTTTTTGGTGTCCTACTCCTGATCACTTCTCTCCAATTGCTCAGTAGAAGCTATAAACAGTATAAGAGTAGACGTTGTCAGCCAGGCTATCATATATGGATTATACATTTATACCCAGTTTATTGAGATGGTCTTAGAAATTACCATAGACCTGTAATTGTGGAGAGAAAGATCACTTGCCCCAGCATTTGGGCCATTGGCATGCCTGCTCTTGCATAGATCTCACTCCTCAATTCATCCATAGAGTAGGACTCCATGTTGAGAAATGGATTTATATTCCCTCAGCACTAAACTTTCCCTACTTACGCCATCACAGATTCACAGCCTTAAACAAGAAAATTCTCCGTTATACTAAACCAGCGAAAATGTTTCTGATACACTCAACAAAGGTTTCATATTTGCCTTTATCATGGTATTCTTCTCTTCACTTTATATTCCTTGTTATTCCTTCTGTTTTAATAAGGCTCTGGAATTATTTCTACAGGATCTTGGTCTATACAAGGCTCAAACAAGACTACCTTTCAATGCTTTTGGAACAATGGCCATGGCTAGAGAAGTGAGATACCTTTACTTTTGATGTTGCATCTGCTTATTTCATGTAACTTTATTTGATGACCTTTATATTTGTTAAAACTCATTGGATTATGGGCGCTTACAGGAATTTGAGAATAACTCTGCCTCAAGTCAGGTGTTTTGGTTGTTGAAAGAAAGTGAACTGACTCCTAGCAACGCCAATATATTGGATGGTCGATATGCTGTGTTT</genome_strand>
        <mrna_strand>GGATATGAAGGTCAAAGTCAAAGACAATCCCAACCTGGAGGAATGCGTATTTCGTATTGTTCTAGATGGATATAATGCTCCAGTTACTGCTGGAAATTTTATAGACTTGGTCGAGAGGCATTTCTATGATGGCATGGATATTCAAAGAG.................................................................................................................................................................................................................................................................................................................................................................................................CGGATGGATTTGTGGTACAAACAGGAGATCCTGAAGGTCCAGCTGAAGGTTTTATTGACCCCAGTACAGAGAAAACCCGGACAGTACCTCTAGAGATTATGGTGGTTGGTGAAAAAGCACCATTCTACGGAGAAACTTTGGAA.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATCTTGGTCTATACAAGGCTCAAACAAGACTACCTTTCAATGCTTTTGGAACAATGGCCATGGCTAGAGAA......................................................................................................GAATTTGAGAATAACTCTGCCTCAAGTCAGGTGTTTTGGTTGCTGAAAGAAAGTGAACTGACTCCTAGCAACGCCAATATATTGGATGGTCGATATGCTGTGTTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0236E02-u8qcS/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E243184" ref_strand="+" ref_description="SGN-E243184 [cLEE-2-A15]">
      <seq>aacattccttgtttgatgcatagacagttttatttgtttcattgattcgcaagaacagagcaaaaatcataagctcacctctttgaatatccatgccatcatagaaatgcctctcgaccaagtctataaaatttccagcagtaactggagcattatatccatctagaacaatacgaaatacgcattcctccaggtacttcatatgggaatccatccaccatatcctcttcaacactgcagaaatcgaatgccccaggaagatctcagctgcagtcaatgacaaggggtctaaatgagaaaggcataactttggaaattcaccatttttaaaagttttcatcactcttcactttctattcatagaattggtccatagtcaacaaaaaatcttattttggtattcaaactggaataagtagcctacttaaacatgcatccgtccaatgacacttctgtgcttctgtggcataaattctaccaaagcaattgctttgtgaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0236E02-u8qcS/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0236E02.1" temp_strand="+" temp_description="C02HBa0236E02.1  AC215430.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0236E02 sequenced_by:kribb upload_account_name:korea">
        <position start="83252" stop="84430"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="83552" g_stop="83744" g_length="193"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="193" r_length="193" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="83745" i_stop="83824" i_length="80">
            <donor d_prob="0.794" d_score="1.00"/>
            <acceptor a_prob="0.917" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="83825" g_stop="84130" g_length="306"/>
          <reference_exon_boundary r_type="cDNA" r_start="194" r_stop="499" r_length="306" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="500" polyA_stop="509"/>
      <MATCH_line gen_id="C02HBa0236E02.1" gen_strand="+" ref_id="SGN-E243184" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>499</cumulative_length_of_scored_exons>
        <coverage percentage="0.980" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0236E02.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E243184" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="83552" e_stop="83744"/>
          <exon e_start="83825" e_stop="84130"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AACATTCCTTGTTTGATGCATAGACAGTTTTATTTGTTTCATTGATTCGCAAGAACAGAGCAAAAATCATAAGCTCACCTCTTTGAATATCCATGCCATCATAGAAATGCCTCTCGACCAAGTCTATAAAATTTCCAGCAGTAACTGGAGCATTATATCCATCTAGAACAATACGAAATACGCATTCCTCCAGGTTGGGATTGTCTTTGACTTTGACCTTCATATCCACAGTTGCTCTTCCCTTCAGTAAAGGCATATTTTGATATTCTTCAGGTACTTCATATGGGAATCCATCCACCATATCCTCTTCAACACTGCAGAAATCGAATGCCCCAGGAAGATCTCAGCTGCAGTCAATGACAAGGGGTCTAAATGAGAAAGGCATAACTTTGGAAATTCACCATTTTTAAAAGTTTTCATCACTCTTCACTTTCTATTCATAGAATTGGTCCATAGTCAACAAAAAATCTTATTTTGGTATTCAAACTGGAATAAGTAGCCTACTTAAACATGCATCCGTCCAATGACACTTCTGTGCTTCTGTGGCATAAATTCTACCAAAGCAATTGCTTTGTGAAA</genome_strand>
        <mrna_strand>AACATTCCTTGTTTGATGCATAGACAGTTTTATTTGTTTCATTGATTCGCAAGAACAGAGCAAAAATCATAAGCTCACCTCTTTGAATATCCATGCCATCATAGAAATGCCTCTCGACCAAGTCTATAAAATTTCCAGCAGTAACTGGAGCATTATATCCATCTAGAACAATACGAAATACGCATTCCTCCAG................................................................................GTACTTCATATGGGAATCCATCCACCATATCCTCTTCAACACTGCAGAAATCGAATGCCCCAGGAAGATCTCAGCTGCAGTCAATGACAAGGGGTCTAAATGAGAAAGGCATAACTTTGGAAATTCACCATTTTTAAAAGTTTTCATCACTCTTCACTTTCTATTCATAGAATTGGTCCATAGTCAACAAAAAATCTTATTTTGGTATTCAAACTGGAATAAGTAGCCTACTTAAACATGCATCCGTCCAATGACACTTCTGTGCTTCTGTGGCATAAATTCTACCAAAGCAATTGCTTTGTGAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0236E02-u8qcS/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E739588" ref_strand="+" ref_description="SGN-E739588 [LC18AB10]">
      <seq>cacttcttccaccaaatccatcaagcctaagctcaattacagccatttcgcacctgctcttagtaaaggatcgatccgccattttgttccactatgttcttcacaacgctcgcttccttctgaatcggaatgccaagacaaagagaaagattggtttttgtcattgaagaaatgtgcagctgcagtagcattgtcggttagtttgattagtggactacctggatcgcaatggttgggtcctgctcatgcgagcaccccagcattgccagatgtctctgtattgatctcagggccaccaattaaggatccaggggcgttattgaggtatgcattgcctatagacaacaaggcgataagagaagtccaaaaaccccttgaagatattactgatagtctcaagattgctggtgtcaaggcgcttgactctgttgaaagaaatacaagacaagcatctcgagctctcaaggaagggaaaaccttgattatttcaggagtagctaagtcaaagactgaccacgctattgaattgctaaacaaactagaagctgggttaggtgagcttcaacaaattgttgaagacaggactcgagatgctgttgcacctaaacagaaggaattgcttaactatgttggaggctgagatcttcctggggcattcgatttctgcagtgttgaagaggatatggtggatggattcccatatgaagtacctgaagaatatcaaaatatgcctttactgaagggaagagcaactgtggatatgaaggtcaaagtcaaagacaatcccaacctggaggaatgcgtatttcgtattgttctagatgaatataatgctccagttact</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0236E02-u8qcS/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0236E02.1" temp_strand="-" temp_description="C02HBa0236E02.1  AC215430.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0236E02 sequenced_by:kribb upload_account_name:korea">
        <position start="85878" stop="83391"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="85579" g_stop="85435" g_length="145"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="145" r_length="145" r_score="0.979"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="85434" i_stop="85119" i_length="316">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.969" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="85118" g_stop="84828" g_length="291"/>
          <reference_exon_boundary r_type="cDNA" r_start="146" r_stop="436" r_length="291" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="84827" i_stop="84719" i_length="109">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.990" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="84718" g_stop="84519" g_length="200"/>
          <reference_exon_boundary r_type="cDNA" r_start="437" r_stop="636" r_length="200" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="84518" i_stop="83899" i_length="620">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.879" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="83898" g_stop="83691" g_length="208"/>
          <reference_exon_boundary r_type="cDNA" r_start="637" r_stop="844" r_length="208" r_score="0.995"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0236E02.1" gen_strand="-" ref_id="SGN-E739588" ref_strand="+">
        <total_alignment_score>0.995</total_alignment_score>
        <cumulative_length_of_scored_exons>844</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0236E02.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E739588" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="85579" e_stop="85435"/>
          <exon e_start="85118" e_stop="84828"/>
          <exon e_start="84718" e_stop="84519"/>
          <exon e_start="83898" e_stop="83691"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AACAACTTCCACCAAATCCATCAAGCCTAAGCTCAATTACAGCCATTTCGCACCTGCTCTTAGTAAAGGATCGATCCGCCATTTTGTTCCACTATGTTCTTCACAACGCTCGCTTCCTTCTGAATCGGAATGCCAAGACAAAGAGGCAAGTTCTATTATTCTCCTTCACTTTTTTTTTTATAAAAAAAATAGACGTTCATTAGTTCGAAATGAGTTAATGGAAATTCAAATATCTAAATGAGAAGTTTGAGTGTACAATTGCATCTATTACTTCGTACTTTAGTATAAAAAAATCGACTATATGCATATGTAGTTTAAGCCGAATCCACTGCCTCAGTTATACAATGTTAGCATTTGTAAGTAATGACAAGACTGCAGTTGGTAGTTCTTTCTAAAGTTCTCAAGTGTGTGTTCTTAATAAGTAGGAACTTATATGATGAAGATTTTTCCCAAACCTGCAGAAAGATTGGTTTTTGTCATTGAAGAAATGTGCAGCTGCAGTAGCATTGTCGGTTAGTTTGATTAGTGGACTACCTGGATCGCAATGGTTGGGTCCTGCTCATGCGAGCACCCCAGCATTGCCAGATGTCTCTGTATTGATCTCAGGGCCACCAATTAAGGATCCAGGGGCGTTATTGAGGTATGCATTGCCTATAGACAACAAGGCGATAAGAGAAGTCCAAAAACCCCTTGAAGATATTACTGATAGTCTCAAGATTGCTGGTGTCAAGGCGCTTGACTCTGTTGAAAGAGTAAGATGTCATTTGCTTAGTTGTTCCCACTTTGATAATTTATTGGCTTGAATCTACTTATTAATGTAGTTCTAGATTCGTAATGGTGGTTCGTATTTTAACTGTGTAGAATACAAGACAAGCATCTCGAGCTCTCAAGGAAGGGAAAACCTTGATTATTTCAGGAGTAGCTAAGTCAAAGACTGACCACGCTATTGAATTGCTAAACAAACTAGAAGCTGGGTTAGGTGAGCTTCAACAAATTGTTGAAGACAGGACTCGAGATGCTGTTGCACCTAAACAGAAGGAATTGCTTAACTATGTTGGAGGGTAAGTGTAGCTAGCTTAGTCTACTTCTAAAAACAGTATTGCTAGCTTAGTTTTCCATGTTCTTTGATGCACATTTTCATAAACCCTGCGAGTTGTAAAGAGTAATGAGTTGTCGGGCTTTGATTTTCTGCTTGATGATGCATCAATATGATGCTTTGTTACTGCTTCATGGACTTAATTTTATCTTCACATGAGACTGAAAAAGAGACCAATCATGCACATACTTAGCCGAAGTATCTGTTCTTCTGTCCTGAATATGTATTGGGTAGCTTGGTTTAGGCAAAGTCAATATCCATATAAAGTGTTGTATTTTCTGTGCTTTGTTACTGGAAATGTTCTAAAAGAAGGTGTCAAAACCTTAGTACAAAATAACTTTTTCTTCTGAAACTTTCACAAAGCAATTGCTTTGGTAGAATTTATGCCACAGAAGCACAGAAGTGTCATTGGACGGATGCATGTTTAAGTAGGCTACTTATTCCAGTTTGAATACCAAAATAAGATTTTTTGTTGACTATGGACCAATTCTATGAATAGAAAGTGAAGAGTGATGAAAACTTTTAAAAATGGTGAATTTCCAAAGTTATGCCTTTCTCATTTAGACCCCTTGTCATTGACTGCAGCTGAGATCTTCCTGGGGCATTCGATTTCTGCAGTGTTGAAGAGGATATGGTGGATGGATTCCCATATGAAGTACCTGAAGAATATCAAAATATGCCTTTACTGAAGGGAAGAGCAACTGTGGATATGAAGGTCAAAGTCAAAGACAATCCCAACCTGGAGGAATGCGTATTTCGTATTGTTCTAGATGGATATAATGCTCCAGTTACT</genome_strand>
        <mrna_strand>CACTTCTTCCACCAAATCCATCAAGCCTAAGCTCAATTACAGCCATTTCGCACCTGCTCTTAGTAAAGGATCGATCCGCCATTTTGTTCCACTATGTTCTTCACAACGCTCGCTTCCTTCTGAATCGGAATGCCAAGACAAAGAG............................................................................................................................................................................................................................................................................................................................AAAGATTGGTTTTTGTCATTGAAGAAATGTGCAGCTGCAGTAGCATTGTCGGTTAGTTTGATTAGTGGACTACCTGGATCGCAATGGTTGGGTCCTGCTCATGCGAGCACCCCAGCATTGCCAGATGTCTCTGTATTGATCTCAGGGCCACCAATTAAGGATCCAGGGGCGTTATTGAGGTATGCATTGCCTATAGACAACAAGGCGATAAGAGAAGTCCAAAAACCCCTTGAAGATATTACTGATAGTCTCAAGATTGCTGGTGTCAAGGCGCTTGACTCTGTTGAAAGA.............................................................................................................AATACAAGACAAGCATCTCGAGCTCTCAAGGAAGGGAAAACCTTGATTATTTCAGGAGTAGCTAAGTCAAAGACTGACCACGCTATTGAATTGCTAAACAAACTAGAAGCTGGGTTAGGTGAGCTTCAACAAATTGTTGAAGACAGGACTCGAGATGCTGTTGCACCTAAACAGAAGGAATTGCTTAACTATGTTGGAGG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTGAGATCTTCCTGGGGCATTCGATTTCTGCAGTGTTGAAGAGGATATGGTGGATGGATTCCCATATGAAGTACCTGAAGAATATCAAAATATGCCTTTACTGAAGGGAAGAGCAACTGTGGATATGAAGGTCAAAGTCAAAGACAATCCCAACCTGGAGGAATGCGTATTTCGTATTGTTCTAGATGAATATAATGCTCCAGTTACT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0236E02-u8qcS/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E739084" ref_strand="+" ref_description="SGN-E739084 [LC16AC07]">
      <seq>ccttcttccaccaaatccatcaagcctaagctcaattacagccatttcgcacctgctcttagtaaaggatcgatccgccattttgttccactatgttcttcacaacgctcgcttccttctgaatcggaatgccaagacaaagagaaagattggtttttgtcattgaagaaatgtgcagctgcagtagcattgtcggttagtttgattagtggactacctggatcgcaatggttgggtcctgctcatgcgagcaccccagcattgccagatgtctctgtattgatctcagggccaccaattaaggatccaggggcgttattgaggtatgcattgcctatagacaacaaggcgataagagaagtccaaaaaccccttgaagatattactgatagtctcaagattgctggtgtcaaggcgcttgactctgttgaaagaaatacaagacaagcatctcgagctctcaaggaagggaaaaccttgattatttcaggagtagctaagtcaaagactgaccacgctattgaattgctaaacaaactagaagctgggttaggtgagcttcaacaaattgttgaagacaggactcgagatgctgttgcacctaaacagaaggaattgcttaactatgttggaggctgagatcttcctggggcattcgatttctgcagtgttgaagaggatatggtggatggattcccatatgaagtacctgaagaatatcaaaatatgcctttactgaagggaagagcaactgtggatatgaaggtcaaagtcaaagacaatcccaacctggaggaatgcgtatttcgtattgttctagatggatataatgctc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0236E02-u8qcS/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0236E02.1" temp_strand="-" temp_description="C02HBa0236E02.1  AC215430.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0236E02 sequenced_by:kribb upload_account_name:korea">
        <position start="85874" stop="83399"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="85578" g_stop="85435" g_length="144"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="144" r_length="144" r_score="0.979"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="85434" i_stop="85119" i_length="316">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.969" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="85118" g_stop="84828" g_length="291"/>
          <reference_exon_boundary r_type="cDNA" r_start="145" r_stop="435" r_length="291" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="84827" i_stop="84719" i_length="109">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.990" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="84718" g_stop="84519" g_length="200"/>
          <reference_exon_boundary r_type="cDNA" r_start="436" r_stop="635" r_length="200" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="84518" i_stop="83899" i_length="620">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.879" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="83898" g_stop="83699" g_length="200"/>
          <reference_exon_boundary r_type="cDNA" r_start="636" r_stop="835" r_length="200" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0236E02.1" gen_strand="-" ref_id="SGN-E739084" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>835</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0236E02.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E739084" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="85578" e_stop="85435"/>
          <exon e_start="85118" e_stop="84828"/>
          <exon e_start="84718" e_stop="84519"/>
          <exon e_start="83898" e_stop="83699"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACAACTTCCACCAAATCCATCAAGCCTAAGCTCAATTACAGCCATTTCGCACCTGCTCTTAGTAAAGGATCGATCCGCCATTTTGTTCCACTATGTTCTTCACAACGCTCGCTTCCTTCTGAATCGGAATGCCAAGACAAAGAGGCAAGTTCTATTATTCTCCTTCACTTTTTTTTTTATAAAAAAAATAGACGTTCATTAGTTCGAAATGAGTTAATGGAAATTCAAATATCTAAATGAGAAGTTTGAGTGTACAATTGCATCTATTACTTCGTACTTTAGTATAAAAAAATCGACTATATGCATATGTAGTTTAAGCCGAATCCACTGCCTCAGTTATACAATGTTAGCATTTGTAAGTAATGACAAGACTGCAGTTGGTAGTTCTTTCTAAAGTTCTCAAGTGTGTGTTCTTAATAAGTAGGAACTTATATGATGAAGATTTTTCCCAAACCTGCAGAAAGATTGGTTTTTGTCATTGAAGAAATGTGCAGCTGCAGTAGCATTGTCGGTTAGTTTGATTAGTGGACTACCTGGATCGCAATGGTTGGGTCCTGCTCATGCGAGCACCCCAGCATTGCCAGATGTCTCTGTATTGATCTCAGGGCCACCAATTAAGGATCCAGGGGCGTTATTGAGGTATGCATTGCCTATAGACAACAAGGCGATAAGAGAAGTCCAAAAACCCCTTGAAGATATTACTGATAGTCTCAAGATTGCTGGTGTCAAGGCGCTTGACTCTGTTGAAAGAGTAAGATGTCATTTGCTTAGTTGTTCCCACTTTGATAATTTATTGGCTTGAATCTACTTATTAATGTAGTTCTAGATTCGTAATGGTGGTTCGTATTTTAACTGTGTAGAATACAAGACAAGCATCTCGAGCTCTCAAGGAAGGGAAAACCTTGATTATTTCAGGAGTAGCTAAGTCAAAGACTGACCACGCTATTGAATTGCTAAACAAACTAGAAGCTGGGTTAGGTGAGCTTCAACAAATTGTTGAAGACAGGACTCGAGATGCTGTTGCACCTAAACAGAAGGAATTGCTTAACTATGTTGGAGGGTAAGTGTAGCTAGCTTAGTCTACTTCTAAAAACAGTATTGCTAGCTTAGTTTTCCATGTTCTTTGATGCACATTTTCATAAACCCTGCGAGTTGTAAAGAGTAATGAGTTGTCGGGCTTTGATTTTCTGCTTGATGATGCATCAATATGATGCTTTGTTACTGCTTCATGGACTTAATTTTATCTTCACATGAGACTGAAAAAGAGACCAATCATGCACATACTTAGCCGAAGTATCTGTTCTTCTGTCCTGAATATGTATTGGGTAGCTTGGTTTAGGCAAAGTCAATATCCATATAAAGTGTTGTATTTTCTGTGCTTTGTTACTGGAAATGTTCTAAAAGAAGGTGTCAAAACCTTAGTACAAAATAACTTTTTCTTCTGAAACTTTCACAAAGCAATTGCTTTGGTAGAATTTATGCCACAGAAGCACAGAAGTGTCATTGGACGGATGCATGTTTAAGTAGGCTACTTATTCCAGTTTGAATACCAAAATAAGATTTTTTGTTGACTATGGACCAATTCTATGAATAGAAAGTGAAGAGTGATGAAAACTTTTAAAAATGGTGAATTTCCAAAGTTATGCCTTTCTCATTTAGACCCCTTGTCATTGACTGCAGCTGAGATCTTCCTGGGGCATTCGATTTCTGCAGTGTTGAAGAGGATATGGTGGATGGATTCCCATATGAAGTACCTGAAGAATATCAAAATATGCCTTTACTGAAGGGAAGAGCAACTGTGGATATGAAGGTCAAAGTCAAAGACAATCCCAACCTGGAGGAATGCGTATTTCGTATTGTTCTAGATGGATATAATGCTC</genome_strand>
        <mrna_strand>CCTTCTTCCACCAAATCCATCAAGCCTAAGCTCAATTACAGCCATTTCGCACCTGCTCTTAGTAAAGGATCGATCCGCCATTTTGTTCCACTATGTTCTTCACAACGCTCGCTTCCTTCTGAATCGGAATGCCAAGACAAAGAG............................................................................................................................................................................................................................................................................................................................AAAGATTGGTTTTTGTCATTGAAGAAATGTGCAGCTGCAGTAGCATTGTCGGTTAGTTTGATTAGTGGACTACCTGGATCGCAATGGTTGGGTCCTGCTCATGCGAGCACCCCAGCATTGCCAGATGTCTCTGTATTGATCTCAGGGCCACCAATTAAGGATCCAGGGGCGTTATTGAGGTATGCATTGCCTATAGACAACAAGGCGATAAGAGAAGTCCAAAAACCCCTTGAAGATATTACTGATAGTCTCAAGATTGCTGGTGTCAAGGCGCTTGACTCTGTTGAAAGA.............................................................................................................AATACAAGACAAGCATCTCGAGCTCTCAAGGAAGGGAAAACCTTGATTATTTCAGGAGTAGCTAAGTCAAAGACTGACCACGCTATTGAATTGCTAAACAAACTAGAAGCTGGGTTAGGTGAGCTTCAACAAATTGTTGAAGACAGGACTCGAGATGCTGTTGCACCTAAACAGAAGGAATTGCTTAACTATGTTGGAGG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTGAGATCTTCCTGGGGCATTCGATTTCTGCAGTGTTGAAGAGGATATGGTGGATGGATTCCCATATGAAGTACCTGAAGAATATCAAAATATGCCTTTACTGAAGGGAAGAGCAACTGTGGATATGAAGGTCAAAGTCAAAGACAATCCCAACCTGGAGGAATGCGTATTTCGTATTGTTCTAGATGGATATAATGCTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0236E02-u8qcS/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E202299" ref_strand="+" ref_description="SGN-E202299 [cLEC-6-G14]">
      <seq>tccaggggcgttattgaggtatgcattgcctatagacaacaaggcgataagagaagtccaaaaaccccttgaagatattactgatagtctcaagattgctggtgtcaaggcgcttgactctgttgaaagaaatacaagacaagcatctcgagctctcaaggaagggaaaaccttgattatttcaggagtagctaagtcaaagactgaccacgctattgaattgctaaacaaactagaagctgggttaggtgagcttcaacaaattgttgaagacaggactcgagatgctgttgcacctaaacagaaggaattgcttaactatgttggaggctgagatcttcctggggcattcgatttctgcagtgttgaagaggatatggtggatggattcccatatgaagtacctgaagagtatcaaaatatgcctttactgaagggaagagcaactgtggatatgaaggtcaaagtcaaagacaatcccaacctggaggaatgcgtatttcgtattgttctagatggatataatgct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0236E02-u8qcS/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0236E02.1" temp_strand="-" temp_description="C02HBa0236E02.1  AC215430.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0236E02 sequenced_by:kribb upload_account_name:korea">
        <position start="85257" stop="83400"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="84957" g_stop="84828" g_length="130"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="130" r_length="130" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="84827" i_stop="84719" i_length="109">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.990" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="84718" g_stop="84519" g_length="200"/>
          <reference_exon_boundary r_type="cDNA" r_start="131" r_stop="330" r_length="200" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="84518" i_stop="83899" i_length="620">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.879" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="83898" g_stop="83700" g_length="199"/>
          <reference_exon_boundary r_type="cDNA" r_start="331" r_stop="529" r_length="199" r_score="0.995"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0236E02.1" gen_strand="-" ref_id="SGN-E202299" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>529</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0236E02.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E202299" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="84957" e_stop="84828"/>
          <exon e_start="84718" e_stop="84519"/>
          <exon e_start="83898" e_stop="83700"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCCAGGGGCGTTATTGAGGTATGCATTGCCTATAGACAACAAGGCGATAAGAGAAGTCCAAAAACCCCTTGAAGATATTACTGATAGTCTCAAGATTGCTGGTGTCAAGGCGCTTGACTCTGTTGAAAGAGTAAGATGTCATTTGCTTAGTTGTTCCCACTTTGATAATTTATTGGCTTGAATCTACTTATTAATGTAGTTCTAGATTCGTAATGGTGGTTCGTATTTTAACTGTGTAGAATACAAGACAAGCATCTCGAGCTCTCAAGGAAGGGAAAACCTTGATTATTTCAGGAGTAGCTAAGTCAAAGACTGACCACGCTATTGAATTGCTAAACAAACTAGAAGCTGGGTTAGGTGAGCTTCAACAAATTGTTGAAGACAGGACTCGAGATGCTGTTGCACCTAAACAGAAGGAATTGCTTAACTATGTTGGAGGGTAAGTGTAGCTAGCTTAGTCTACTTCTAAAAACAGTATTGCTAGCTTAGTTTTCCATGTTCTTTGATGCACATTTTCATAAACCCTGCGAGTTGTAAAGAGTAATGAGTTGTCGGGCTTTGATTTTCTGCTTGATGATGCATCAATATGATGCTTTGTTACTGCTTCATGGACTTAATTTTATCTTCACATGAGACTGAAAAAGAGACCAATCATGCACATACTTAGCCGAAGTATCTGTTCTTCTGTCCTGAATATGTATTGGGTAGCTTGGTTTAGGCAAAGTCAATATCCATATAAAGTGTTGTATTTTCTGTGCTTTGTTACTGGAAATGTTCTAAAAGAAGGTGTCAAAACCTTAGTACAAAATAACTTTTTCTTCTGAAACTTTCACAAAGCAATTGCTTTGGTAGAATTTATGCCACAGAAGCACAGAAGTGTCATTGGACGGATGCATGTTTAAGTAGGCTACTTATTCCAGTTTGAATACCAAAATAAGATTTTTTGTTGACTATGGACCAATTCTATGAATAGAAAGTGAAGAGTGATGAAAACTTTTAAAAATGGTGAATTTCCAAAGTTATGCCTTTCTCATTTAGACCCCTTGTCATTGACTGCAGCTGAGATCTTCCTGGGGCATTCGATTTCTGCAGTGTTGAAGAGGATATGGTGGATGGATTCCCATATGAAGTACCTGAAGAATATCAAAATATGCCTTTACTGAAGGGAAGAGCAACTGTGGATATGAAGGTCAAAGTCAAAGACAATCCCAACCTGGAGGAATGCGTATTTCGTATTGTTCTAGATGGATATAATGCT</genome_strand>
        <mrna_strand>TCCAGGGGCGTTATTGAGGTATGCATTGCCTATAGACAACAAGGCGATAAGAGAAGTCCAAAAACCCCTTGAAGATATTACTGATAGTCTCAAGATTGCTGGTGTCAAGGCGCTTGACTCTGTTGAAAGA.............................................................................................................AATACAAGACAAGCATCTCGAGCTCTCAAGGAAGGGAAAACCTTGATTATTTCAGGAGTAGCTAAGTCAAAGACTGACCACGCTATTGAATTGCTAAACAAACTAGAAGCTGGGTTAGGTGAGCTTCAACAAATTGTTGAAGACAGGACTCGAGATGCTGTTGCACCTAAACAGAAGGAATTGCTTAACTATGTTGGAGG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTGAGATCTTCCTGGGGCATTCGATTTCTGCAGTGTTGAAGAGGATATGGTGGATGGATTCCCATATGAAGTACCTGAAGAGTATCAAAATATGCCTTTACTGAAGGGAAGAGCAACTGTGGATATGAAGGTCAAAGTCAAAGACAATCCCAACCTGGAGGAATGCGTATTTCGTATTGTTCTAGATGGATATAATGCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0236E02-u8qcS/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E736433" ref_strand="+" ref_description="SGN-E736433 [LC05DA06]">
      <seq>cggttctctagaattgcttgactgtgtaaacaaactagttgtaaattcatcaatggcagcatctgtttcctgccactatttttcttccccattaacaacttccaccaaatccatcaagcctaagctcaattacagccatttcgcacctgctcttagtaaaggatcgatccgccattttgttccactatgttcttcacaacgctcgcttccttctgaatcggaatgccaagacaaagagaaagattggtttttgtcattgaagaaatgtgcagctgcagtagcattgtcggttagtttgattagtggactacctggatcgcaatggttgggtcctgctcatgcgagcaccccagcattgccagatgtctctgtattgatctcagggccaccaattaaggatccaggggcgttattgaggtatgcattgcctatagacaacaaggcgataagagaagtccaaaaaccccttgaagatattactgatagtctcaagattgctggtgtcaaggcgcttgactctgttgaaagaaatacaagacaagcatctcgagctctcaaggaagggaaaaccttgattatttcaggagtagctaagtcaaagactgaccacgctattgaattgctaaacaaactagaagctgggttaggtgagcttcaacaaattgttgaagacaggactcgagatgctgttgcacctaaacagaaggaattgcttaactatgttggaggtgttgaagaggatatggtggatggattcccatatgaagtacctgaagaatatcaaaatatgcctttactgaaggga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0236E02-u8qcS/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0236E02.1" temp_strand="-" temp_description="C02HBa0236E02.1  AC215430.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0236E02 sequenced_by:kribb upload_account_name:korea">
        <position start="85970" stop="83490"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="85672" g_stop="85435" g_length="238"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="238" r_length="238" r_score="0.987"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="85434" i_stop="85119" i_length="316">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.969" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="85118" g_stop="84828" g_length="291"/>
          <reference_exon_boundary r_type="cDNA" r_start="239" r_stop="529" r_length="291" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="84827" i_stop="84719" i_length="109">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.990" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="84718" g_stop="84519" g_length="200"/>
          <reference_exon_boundary r_type="cDNA" r_start="530" r_stop="729" r_length="200" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="84518" i_stop="83866" i_length="653">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.910" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="83865" g_stop="83790" g_length="76"/>
          <reference_exon_boundary r_type="cDNA" r_start="730" r_stop="805" r_length="76" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0236E02.1" gen_strand="-" ref_id="SGN-E736433" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>805</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0236E02.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E736433" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="85672" e_stop="85435"/>
          <exon e_start="85118" e_stop="84828"/>
          <exon e_start="84718" e_stop="84519"/>
          <exon e_start="83865" e_stop="83790"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATGTCCTCTAGAATTGCTTGACTGTGTAAACAAACTAGTTGTAAATTCATCAATGGCAGCATCTGTTTCCTGCCACTATTTTTCTTCCCCATTAACAACTTCCACCAAATCCATCAAGCCTAAGCTCAATTACAGCCATTTCGCACCTGCTCTTAGTAAAGGATCGATCCGCCATTTTGTTCCACTATGTTCTTCACAACGCTCGCTTCCTTCTGAATCGGAATGCCAAGACAAAGAGGCAAGTTCTATTATTCTCCTTCACTTTTTTTTTTATAAAAAAAATAGACGTTCATTAGTTCGAAATGAGTTAATGGAAATTCAAATATCTAAATGAGAAGTTTGAGTGTACAATTGCATCTATTACTTCGTACTTTAGTATAAAAAAATCGACTATATGCATATGTAGTTTAAGCCGAATCCACTGCCTCAGTTATACAATGTTAGCATTTGTAAGTAATGACAAGACTGCAGTTGGTAGTTCTTTCTAAAGTTCTCAAGTGTGTGTTCTTAATAAGTAGGAACTTATATGATGAAGATTTTTCCCAAACCTGCAGAAAGATTGGTTTTTGTCATTGAAGAAATGTGCAGCTGCAGTAGCATTGTCGGTTAGTTTGATTAGTGGACTACCTGGATCGCAATGGTTGGGTCCTGCTCATGCGAGCACCCCAGCATTGCCAGATGTCTCTGTATTGATCTCAGGGCCACCAATTAAGGATCCAGGGGCGTTATTGAGGTATGCATTGCCTATAGACAACAAGGCGATAAGAGAAGTCCAAAAACCCCTTGAAGATATTACTGATAGTCTCAAGATTGCTGGTGTCAAGGCGCTTGACTCTGTTGAAAGAGTAAGATGTCATTTGCTTAGTTGTTCCCACTTTGATAATTTATTGGCTTGAATCTACTTATTAATGTAGTTCTAGATTCGTAATGGTGGTTCGTATTTTAACTGTGTAGAATACAAGACAAGCATCTCGAGCTCTCAAGGAAGGGAAAACCTTGATTATTTCAGGAGTAGCTAAGTCAAAGACTGACCACGCTATTGAATTGCTAAACAAACTAGAAGCTGGGTTAGGTGAGCTTCAACAAATTGTTGAAGACAGGACTCGAGATGCTGTTGCACCTAAACAGAAGGAATTGCTTAACTATGTTGGAGGGTAAGTGTAGCTAGCTTAGTCTACTTCTAAAAACAGTATTGCTAGCTTAGTTTTCCATGTTCTTTGATGCACATTTTCATAAACCCTGCGAGTTGTAAAGAGTAATGAGTTGTCGGGCTTTGATTTTCTGCTTGATGATGCATCAATATGATGCTTTGTTACTGCTTCATGGACTTAATTTTATCTTCACATGAGACTGAAAAAGAGACCAATCATGCACATACTTAGCCGAAGTATCTGTTCTTCTGTCCTGAATATGTATTGGGTAGCTTGGTTTAGGCAAAGTCAATATCCATATAAAGTGTTGTATTTTCTGTGCTTTGTTACTGGAAATGTTCTAAAAGAAGGTGTCAAAACCTTAGTACAAAATAACTTTTTCTTCTGAAACTTTCACAAAGCAATTGCTTTGGTAGAATTTATGCCACAGAAGCACAGAAGTGTCATTGGACGGATGCATGTTTAAGTAGGCTACTTATTCCAGTTTGAATACCAAAATAAGATTTTTTGTTGACTATGGACCAATTCTATGAATAGAAAGTGAAGAGTGATGAAAACTTTTAAAAATGGTGAATTTCCAAAGTTATGCCTTTCTCATTTAGACCCCTTGTCATTGACTGCAGCTGAGATCTTCCTGGGGCATTCGATTTCTGCAGTGTTGAAGAGGATATGGTGGATGGATTCCCATATGAAGTACCTGAAGAATATCAAAATATGCCTTTACTGAAGGGA</genome_strand>
        <mrna_strand>CGGTTCTCTAGAATTGCTTGACTGTGTAAACAAACTAGTTGTAAATTCATCAATGGCAGCATCTGTTTCCTGCCACTATTTTTCTTCCCCATTAACAACTTCCACCAAATCCATCAAGCCTAAGCTCAATTACAGCCATTTCGCACCTGCTCTTAGTAAAGGATCGATCCGCCATTTTGTTCCACTATGTTCTTCACAACGCTCGCTTCCTTCTGAATCGGAATGCCAAGACAAAGAG............................................................................................................................................................................................................................................................................................................................AAAGATTGGTTTTTGTCATTGAAGAAATGTGCAGCTGCAGTAGCATTGTCGGTTAGTTTGATTAGTGGACTACCTGGATCGCAATGGTTGGGTCCTGCTCATGCGAGCACCCCAGCATTGCCAGATGTCTCTGTATTGATCTCAGGGCCACCAATTAAGGATCCAGGGGCGTTATTGAGGTATGCATTGCCTATAGACAACAAGGCGATAAGAGAAGTCCAAAAACCCCTTGAAGATATTACTGATAGTCTCAAGATTGCTGGTGTCAAGGCGCTTGACTCTGTTGAAAGA.............................................................................................................AATACAAGACAAGCATCTCGAGCTCTCAAGGAAGGGAAAACCTTGATTATTTCAGGAGTAGCTAAGTCAAAGACTGACCACGCTATTGAATTGCTAAACAAACTAGAAGCTGGGTTAGGTGAGCTTCAACAAATTGTTGAAGACAGGACTCGAGATGCTGTTGCACCTAAACAGAAGGAATTGCTTAACTATGTTGGAGG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGTTGAAGAGGATATGGTGGATGGATTCCCATATGAAGTACCTGAAGAATATCAAAATATGCCTTTACTGAAGGGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0236E02-u8qcS/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E707272" ref_strand="+" ref_description="SGN-E707272 [FA32CB08]">
      <seq>ctctatttcttcattaataacagttgcattttgtcaatttttttccctccaaaccccaaatgtcctctagaattgcttgactgtgtaaacaaactagttgtaaattcatcaatggcagcatctgtttcctgccactatttttcttccccattaacaacttccaccaaatccatcaagcctaagctcaattacagccatttcgcacctgctcttagtaaaggatcgatccgccattttgttccactatgttcttcacaacgctcgcttccttctgaatcggaatgccaagacaaagagaaagattggtttttgtcattgaagaaatgtgcagctgcagtagcattgtcggttagtttgattagtggactacctggatcgcaatggttgggtcctgctcatgcgagcaccccagcattgccagatgtctctgtattgatctcagggccaccaattaaggatccaggggcgttattgaggtatgcattgcctatagacaacaaggcgataagagaagtccaaaaaccccttgaagatattactgatagtctcaagattgctggtgtcaaggcgcttgactctgttgaaagaaatacaagacaagcatctcgagctctcaaggaagggaaaaccttgattatttcaggagtagctaagtcaaagactgaccacgctattgaattgctaaacaaactagaagctgggttaggtgagcttcaacaaattgttgaagacaggactcgagatgctgttgcacctaaacagaaggaattgcttaactatgttggaggtgttgaagaggatatggtggatggattcccatatgaagtacctgaagaatatcaaaatatgcctttactgaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0236E02-u8qcS/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0236E02.1" temp_strand="-" temp_description="C02HBa0236E02.1  AC215430.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0236E02 sequenced_by:kribb upload_account_name:korea">
        <position start="86031" stop="83494"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="85731" g_stop="85435" g_length="297"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="297" r_length="297" r_score="0.997"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="85434" i_stop="85119" i_length="316">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.969" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="85118" g_stop="84828" g_length="291"/>
          <reference_exon_boundary r_type="cDNA" r_start="298" r_stop="588" r_length="291" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="84827" i_stop="84719" i_length="109">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.990" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="84718" g_stop="84519" g_length="200"/>
          <reference_exon_boundary r_type="cDNA" r_start="589" r_stop="788" r_length="200" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="84518" i_stop="83866" i_length="653">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.910" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="83865" g_stop="83794" g_length="72"/>
          <reference_exon_boundary r_type="cDNA" r_start="789" r_stop="860" r_length="72" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0236E02.1" gen_strand="-" ref_id="SGN-E707272" ref_strand="+">
        <total_alignment_score>0.999</total_alignment_score>
        <cumulative_length_of_scored_exons>860</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0236E02.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E707272" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="85731" e_stop="85435"/>
          <exon e_start="85118" e_stop="84828"/>
          <exon e_start="84718" e_stop="84519"/>
          <exon e_start="83865" e_stop="83794"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTCAATTTCTTCATTAATAACAGTTGCATTTTGTCAATTTTTTTCCCTCCAAACCCCAAATGTCCTCTAGAATTGCTTGACTGTGTAAACAAACTAGTTGTAAATTCATCAATGGCAGCATCTGTTTCCTGCCACTATTTTTCTTCCCCATTAACAACTTCCACCAAATCCATCAAGCCTAAGCTCAATTACAGCCATTTCGCACCTGCTCTTAGTAAAGGATCGATCCGCCATTTTGTTCCACTATGTTCTTCACAACGCTCGCTTCCTTCTGAATCGGAATGCCAAGACAAAGAGGCAAGTTCTATTATTCTCCTTCACTTTTTTTTTTATAAAAAAAATAGACGTTCATTAGTTCGAAATGAGTTAATGGAAATTCAAATATCTAAATGAGAAGTTTGAGTGTACAATTGCATCTATTACTTCGTACTTTAGTATAAAAAAATCGACTATATGCATATGTAGTTTAAGCCGAATCCACTGCCTCAGTTATACAATGTTAGCATTTGTAAGTAATGACAAGACTGCAGTTGGTAGTTCTTTCTAAAGTTCTCAAGTGTGTGTTCTTAATAAGTAGGAACTTATATGATGAAGATTTTTCCCAAACCTGCAGAAAGATTGGTTTTTGTCATTGAAGAAATGTGCAGCTGCAGTAGCATTGTCGGTTAGTTTGATTAGTGGACTACCTGGATCGCAATGGTTGGGTCCTGCTCATGCGAGCACCCCAGCATTGCCAGATGTCTCTGTATTGATCTCAGGGCCACCAATTAAGGATCCAGGGGCGTTATTGAGGTATGCATTGCCTATAGACAACAAGGCGATAAGAGAAGTCCAAAAACCCCTTGAAGATATTACTGATAGTCTCAAGATTGCTGGTGTCAAGGCGCTTGACTCTGTTGAAAGAGTAAGATGTCATTTGCTTAGTTGTTCCCACTTTGATAATTTATTGGCTTGAATCTACTTATTAATGTAGTTCTAGATTCGTAATGGTGGTTCGTATTTTAACTGTGTAGAATACAAGACAAGCATCTCGAGCTCTCAAGGAAGGGAAAACCTTGATTATTTCAGGAGTAGCTAAGTCAAAGACTGACCACGCTATTGAATTGCTAAACAAACTAGAAGCTGGGTTAGGTGAGCTTCAACAAATTGTTGAAGACAGGACTCGAGATGCTGTTGCACCTAAACAGAAGGAATTGCTTAACTATGTTGGAGGGTAAGTGTAGCTAGCTTAGTCTACTTCTAAAAACAGTATTGCTAGCTTAGTTTTCCATGTTCTTTGATGCACATTTTCATAAACCCTGCGAGTTGTAAAGAGTAATGAGTTGTCGGGCTTTGATTTTCTGCTTGATGATGCATCAATATGATGCTTTGTTACTGCTTCATGGACTTAATTTTATCTTCACATGAGACTGAAAAAGAGACCAATCATGCACATACTTAGCCGAAGTATCTGTTCTTCTGTCCTGAATATGTATTGGGTAGCTTGGTTTAGGCAAAGTCAATATCCATATAAAGTGTTGTATTTTCTGTGCTTTGTTACTGGAAATGTTCTAAAAGAAGGTGTCAAAACCTTAGTACAAAATAACTTTTTCTTCTGAAACTTTCACAAAGCAATTGCTTTGGTAGAATTTATGCCACAGAAGCACAGAAGTGTCATTGGACGGATGCATGTTTAAGTAGGCTACTTATTCCAGTTTGAATACCAAAATAAGATTTTTTGTTGACTATGGACCAATTCTATGAATAGAAAGTGAAGAGTGATGAAAACTTTTAAAAATGGTGAATTTCCAAAGTTATGCCTTTCTCATTTAGACCCCTTGTCATTGACTGCAGCTGAGATCTTCCTGGGGCATTCGATTTCTGCAGTGTTGAAGAGGATATGGTGGATGGATTCCCATATGAAGTACCTGAAGAATATCAAAATATGCCTTTACTGAA</genome_strand>
        <mrna_strand>CTCTATTTCTTCATTAATAACAGTTGCATTTTGTCAATTTTTTTCCCTCCAAACCCCAAATGTCCTCTAGAATTGCTTGACTGTGTAAACAAACTAGTTGTAAATTCATCAATGGCAGCATCTGTTTCCTGCCACTATTTTTCTTCCCCATTAACAACTTCCACCAAATCCATCAAGCCTAAGCTCAATTACAGCCATTTCGCACCTGCTCTTAGTAAAGGATCGATCCGCCATTTTGTTCCACTATGTTCTTCACAACGCTCGCTTCCTTCTGAATCGGAATGCCAAGACAAAGAG............................................................................................................................................................................................................................................................................................................................AAAGATTGGTTTTTGTCATTGAAGAAATGTGCAGCTGCAGTAGCATTGTCGGTTAGTTTGATTAGTGGACTACCTGGATCGCAATGGTTGGGTCCTGCTCATGCGAGCACCCCAGCATTGCCAGATGTCTCTGTATTGATCTCAGGGCCACCAATTAAGGATCCAGGGGCGTTATTGAGGTATGCATTGCCTATAGACAACAAGGCGATAAGAGAAGTCCAAAAACCCCTTGAAGATATTACTGATAGTCTCAAGATTGCTGGTGTCAAGGCGCTTGACTCTGTTGAAAGA.............................................................................................................AATACAAGACAAGCATCTCGAGCTCTCAAGGAAGGGAAAACCTTGATTATTTCAGGAGTAGCTAAGTCAAAGACTGACCACGCTATTGAATTGCTAAACAAACTAGAAGCTGGGTTAGGTGAGCTTCAACAAATTGTTGAAGACAGGACTCGAGATGCTGTTGCACCTAAACAGAAGGAATTGCTTAACTATGTTGGAGG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGTTGAAGAGGATATGGTGGATGGATTCCCATATGAAGTACCTGAAGAATATCAAAATATGCCTTTACTGAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0236E02-u8qcS/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E459138" ref_strand="+" ref_description="SGN-E459138 [cPRO-33-O6]">
      <seq>aatccatcaagcctaagctcaattacagccattttgcacctactcttagtaaaggatcgatccgccattttgttccattatgttcttcacaacgttcgcctccttctgaatctgaatgccaaggcaaagagaaagattggtttttgtcattgaagaaatgtgcagctgcagttgcattgtcagttagtttgataactggactacctggatcgcaatggttgagtcctgctcatgcgagcaccccagcattgccagatgtctctgtattgatctcagggccaccaattaaggatccaggggcgttattgaggtatgcattgcctatagacaacaaggcaataagagaagtccaaaagccccttgaagatattactgatagtctcaagattgctggtgtcaaggcacttgactctgttgaaagaaatacaagacaagcatctcgtgttctcaaggaagggaaaaccttgattgtttcaggagtagctaaatcaaagactgaccacgctattgaattgctaaacaaactagaagctgggttaggtgagcttcaacaaattgttgaagacaggaatcgagatgctgttgcacctaaacagaaggaattgcttaactatgttggaggctgagatcttcctggggcattcgatttctgcagtgttgaagaagatatgggtggatggattcccatatgaagtacctgaagaatatcaaaatatgcctttact</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0236E02-u8qcS/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0236E02.1" temp_strand="-" temp_description="C02HBa0236E02.1  AC215430.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0236E02 sequenced_by:kribb upload_account_name:korea">
        <position start="85865" stop="83497"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="85565" g_stop="85435" g_length="131"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="131" r_length="131" r_score="0.947"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="85434" i_stop="85119" i_length="316">
            <donor d_prob="1.000" d_score="0.92"/>
            <acceptor a_prob="0.969" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="85118" g_stop="84828" g_length="291"/>
          <reference_exon_boundary r_type="cDNA" r_start="132" r_stop="422" r_length="291" r_score="0.973"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="84827" i_stop="84719" i_length="109">
            <donor d_prob="0.997" d_score="0.98"/>
            <acceptor a_prob="0.990" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="84718" g_stop="84519" g_length="200"/>
          <reference_exon_boundary r_type="cDNA" r_start="423" r_stop="622" r_length="200" r_score="0.975"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="84518" i_stop="83899" i_length="620">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.879" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="83898" g_stop="83797" g_length="102"/>
          <reference_exon_boundary r_type="cDNA" r_start="623" r_stop="725" r_length="103" r_score="0.971"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0236E02.1" gen_strand="-" ref_id="SGN-E459138" ref_strand="+">
        <total_alignment_score>0.968</total_alignment_score>
        <cumulative_length_of_scored_exons>724</cumulative_length_of_scored_exons>
        <coverage percentage="0.999" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0236E02.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E459138" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="85565" e_stop="85435"/>
          <exon e_start="85118" e_stop="84828"/>
          <exon e_start="84718" e_stop="84519"/>
          <exon e_start="83898" e_stop="83797"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AATCCATCAAGCCTAAGCTCAATTACAGCCATTTCGCACCTGCTCTTAGTAAAGGATCGATCCGCCATTTTGTTCCACTATGTTCTTCACAACGCTCGCTTCCTTCTGAATCGGAATGCCAAGACAAAGAGGCAAGTTCTATTATTCTCCTTCACTTTTTTTTTTATAAAAAAAATAGACGTTCATTAGTTCGAAATGAGTTAATGGAAATTCAAATATCTAAATGAGAAGTTTGAGTGTACAATTGCATCTATTACTTCGTACTTTAGTATAAAAAAATCGACTATATGCATATGTAGTTTAAGCCGAATCCACTGCCTCAGTTATACAATGTTAGCATTTGTAAGTAATGACAAGACTGCAGTTGGTAGTTCTTTCTAAAGTTCTCAAGTGTGTGTTCTTAATAAGTAGGAACTTATATGATGAAGATTTTTCCCAAACCTGCAGAAAGATTGGTTTTTGTCATTGAAGAAATGTGCAGCTGCAGTAGCATTGTCGGTTAGTTTGATTAGTGGACTACCTGGATCGCAATGGTTGGGTCCTGCTCATGCGAGCACCCCAGCATTGCCAGATGTCTCTGTATTGATCTCAGGGCCACCAATTAAGGATCCAGGGGCGTTATTGAGGTATGCATTGCCTATAGACAACAAGGCGATAAGAGAAGTCCAAAAACCCCTTGAAGATATTACTGATAGTCTCAAGATTGCTGGTGTCAAGGCGCTTGACTCTGTTGAAAGAGTAAGATGTCATTTGCTTAGTTGTTCCCACTTTGATAATTTATTGGCTTGAATCTACTTATTAATGTAGTTCTAGATTCGTAATGGTGGTTCGTATTTTAACTGTGTAGAATACAAGACAAGCATCTCGAGCTCTCAAGGAAGGGAAAACCTTGATTATTTCAGGAGTAGCTAAGTCAAAGACTGACCACGCTATTGAATTGCTAAACAAACTAGAAGCTGGGTTAGGTGAGCTTCAACAAATTGTTGAAGACAGGACTCGAGATGCTGTTGCACCTAAACAGAAGGAATTGCTTAACTATGTTGGAGGGTAAGTGTAGCTAGCTTAGTCTACTTCTAAAAACAGTATTGCTAGCTTAGTTTTCCATGTTCTTTGATGCACATTTTCATAAACCCTGCGAGTTGTAAAGAGTAATGAGTTGTCGGGCTTTGATTTTCTGCTTGATGATGCATCAATATGATGCTTTGTTACTGCTTCATGGACTTAATTTTATCTTCACATGAGACTGAAAAAGAGACCAATCATGCACATACTTAGCCGAAGTATCTGTTCTTCTGTCCTGAATATGTATTGGGTAGCTTGGTTTAGGCAAAGTCAATATCCATATAAAGTGTTGTATTTTCTGTGCTTTGTTACTGGAAATGTTCTAAAAGAAGGTGTCAAAACCTTAGTACAAAATAACTTTTTCTTCTGAAACTTTCACAAAGCAATTGCTTTGGTAGAATTTATGCCACAGAAGCACAGAAGTGTCATTGGACGGATGCATGTTTAAGTAGGCTACTTATTCCAGTTTGAATACCAAAATAAGATTTTTTGTTGACTATGGACCAATTCTATGAATAGAAAGTGAAGAGTGATGAAAACTTTTAAAAATGGTGAATTTCCAAAGTTATGCCTTTCTCATTTAGACCCCTTGTCATTGACTGCAGCTGAGATCTTCCTGGGGCATTCGATTTCTGCAGTGTTGAAGAGGATAT-GGTGGATGGATTCCCATATGAAGTACCTGAAGAATATCAAAATATGCCTTTACT</genome_strand>
        <mrna_strand>AATCCATCAAGCCTAAGCTCAATTACAGCCATTTTGCACCTACTCTTAGTAAAGGATCGATCCGCCATTTTGTTCCATTATGTTCTTCACAACGTTCGCCTCCTTCTGAATCTGAATGCCAAGGCAAAGAG............................................................................................................................................................................................................................................................................................................................AAAGATTGGTTTTTGTCATTGAAGAAATGTGCAGCTGCAGTTGCATTGTCAGTTAGTTTGATAACTGGACTACCTGGATCGCAATGGTTGAGTCCTGCTCATGCGAGCACCCCAGCATTGCCAGATGTCTCTGTATTGATCTCAGGGCCACCAATTAAGGATCCAGGGGCGTTATTGAGGTATGCATTGCCTATAGACAACAAGGCAATAAGAGAAGTCCAAAAGCCCCTTGAAGATATTACTGATAGTCTCAAGATTGCTGGTGTCAAGGCACTTGACTCTGTTGAAAGA.............................................................................................................AATACAAGACAAGCATCTCGTGTTCTCAAGGAAGGGAAAACCTTGATTGTTTCAGGAGTAGCTAAATCAAAGACTGACCACGCTATTGAATTGCTAAACAAACTAGAAGCTGGGTTAGGTGAGCTTCAACAAATTGTTGAAGACAGGAATCGAGATGCTGTTGCACCTAAACAGAAGGAATTGCTTAACTATGTTGGAGG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTGAGATCTTCCTGGGGCATTCGATTTCTGCAGTGTTGAAGAAGATATGGGTGGATGGATTCCCATATGAAGTACCTGAAGAATATCAAAATATGCCTTTACT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0236E02-u8qcS/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E731269" ref_strand="+" ref_description="SGN-E731269 [LA26CE10]">
      <seq>caaatgtcctctagaattgcttgactgtgtaaacaaactagttgtaaattcatcaatggcagcatctgtttcctgccactatttttcttccccattaacaacttccaccaaatccatcaagcctaagctcaattacagccatttcgcacctgctcttagtaaaggatcgatccgccattttgttccactatgttcttcacaacgctcgcttccttctgaatcggaatgccaagacaaagagaaagattggtttttgtcattgaagaaatgtgcagctgcagtagcattgtcggttagtttgattagtggactacctggatcgcaatggttgggtcctgctcatgcgagcaccccagcattgccagatgtctctgtattgatctcagggccaccaattaaggatccaggggcgttattgaggtatgcattgcctatagacaacaaggcgataagagaagtccaaaaaccccttgaagatattactgatagtctcaagattgctggtgtcaaggcgcttgactctgttgaaagaaatacaagacaagcatctcgagctctcaaggaagggaaaaccttgattatttcaggagtagctaagtcaaagactgaccacgctattgaattgctaaacaaactagaagctgggttaggtgagcttcaacaaattgttgaagacaggactcgagatgctgttgcacctaaacagaangaattgcttaactatgttg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0236E02-u8qcS/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0236E02.1" temp_strand="-" temp_description="C02HBa0236E02.1  AC215430.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0236E02 sequenced_by:kribb upload_account_name:korea">
        <position start="85975" stop="84223"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="85675" g_stop="85435" g_length="241"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="241" r_length="241" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="85434" i_stop="85119" i_length="316">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.969" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="85118" g_stop="84828" g_length="291"/>
          <reference_exon_boundary r_type="cDNA" r_start="242" r_stop="532" r_length="291" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="84827" i_stop="84719" i_length="109">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.990" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="84718" g_stop="84523" g_length="196"/>
          <reference_exon_boundary r_type="cDNA" r_start="533" r_stop="728" r_length="196" r_score="0.995"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0236E02.1" gen_strand="-" ref_id="SGN-E731269" ref_strand="+">
        <total_alignment_score>0.999</total_alignment_score>
        <cumulative_length_of_scored_exons>728</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0236E02.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E731269" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="85675" e_stop="85435"/>
          <exon e_start="85118" e_stop="84828"/>
          <exon e_start="84718" e_stop="84523"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAAATGTCCTCTAGAATTGCTTGACTGTGTAAACAAACTAGTTGTAAATTCATCAATGGCAGCATCTGTTTCCTGCCACTATTTTTCTTCCCCATTAACAACTTCCACCAAATCCATCAAGCCTAAGCTCAATTACAGCCATTTCGCACCTGCTCTTAGTAAAGGATCGATCCGCCATTTTGTTCCACTATGTTCTTCACAACGCTCGCTTCCTTCTGAATCGGAATGCCAAGACAAAGAGGCAAGTTCTATTATTCTCCTTCACTTTTTTTTTTATAAAAAAAATAGACGTTCATTAGTTCGAAATGAGTTAATGGAAATTCAAATATCTAAATGAGAAGTTTGAGTGTACAATTGCATCTATTACTTCGTACTTTAGTATAAAAAAATCGACTATATGCATATGTAGTTTAAGCCGAATCCACTGCCTCAGTTATACAATGTTAGCATTTGTAAGTAATGACAAGACTGCAGTTGGTAGTTCTTTCTAAAGTTCTCAAGTGTGTGTTCTTAATAAGTAGGAACTTATATGATGAAGATTTTTCCCAAACCTGCAGAAAGATTGGTTTTTGTCATTGAAGAAATGTGCAGCTGCAGTAGCATTGTCGGTTAGTTTGATTAGTGGACTACCTGGATCGCAATGGTTGGGTCCTGCTCATGCGAGCACCCCAGCATTGCCAGATGTCTCTGTATTGATCTCAGGGCCACCAATTAAGGATCCAGGGGCGTTATTGAGGTATGCATTGCCTATAGACAACAAGGCGATAAGAGAAGTCCAAAAACCCCTTGAAGATATTACTGATAGTCTCAAGATTGCTGGTGTCAAGGCGCTTGACTCTGTTGAAAGAGTAAGATGTCATTTGCTTAGTTGTTCCCACTTTGATAATTTATTGGCTTGAATCTACTTATTAATGTAGTTCTAGATTCGTAATGGTGGTTCGTATTTTAACTGTGTAGAATACAAGACAAGCATCTCGAGCTCTCAAGGAAGGGAAAACCTTGATTATTTCAGGAGTAGCTAAGTCAAAGACTGACCACGCTATTGAATTGCTAAACAAACTAGAAGCTGGGTTAGGTGAGCTTCAACAAATTGTTGAAGACAGGACTCGAGATGCTGTTGCACCTAAACAGAAGGAATTGCTTAACTATGTTG</genome_strand>
        <mrna_strand>CAAATGTCCTCTAGAATTGCTTGACTGTGTAAACAAACTAGTTGTAAATTCATCAATGGCAGCATCTGTTTCCTGCCACTATTTTTCTTCCCCATTAACAACTTCCACCAAATCCATCAAGCCTAAGCTCAATTACAGCCATTTCGCACCTGCTCTTAGTAAAGGATCGATCCGCCATTTTGTTCCACTATGTTCTTCACAACGCTCGCTTCCTTCTGAATCGGAATGCCAAGACAAAGAG............................................................................................................................................................................................................................................................................................................................AAAGATTGGTTTTTGTCATTGAAGAAATGTGCAGCTGCAGTAGCATTGTCGGTTAGTTTGATTAGTGGACTACCTGGATCGCAATGGTTGGGTCCTGCTCATGCGAGCACCCCAGCATTGCCAGATGTCTCTGTATTGATCTCAGGGCCACCAATTAAGGATCCAGGGGCGTTATTGAGGTATGCATTGCCTATAGACAACAAGGCGATAAGAGAAGTCCAAAAACCCCTTGAAGATATTACTGATAGTCTCAAGATTGCTGGTGTCAAGGCGCTTGACTCTGTTGAAAGA.............................................................................................................AATACAAGACAAGCATCTCGAGCTCTCAAGGAAGGGAAAACCTTGATTATTTCAGGAGTAGCTAAGTCAAAGACTGACCACGCTATTGAATTGCTAAACAAACTAGAAGCTGGGTTAGGTGAGCTTCAACAAATTGTTGAAGACAGGACTCGAGATGCTGTTGCACCTAAACAGAANGAATTGCTTAACTATGTTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0236E02-u8qcS/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E347481" ref_strand="+" ref_description="SGN-E347481 [cTOF-33-D22]">
      <seq>tcctctagaattgcttgactgtgtaaacaaactagttgtaaattcatcaatggcagcatctgtttcctgccactatttttcttccccattaacaacttccaccaaatccatcaagcctaagctcaattacagccatttcgcacctgctcttagtaaaggatcgatccgccattttgttccactatgttcttcacaacgctcgcttccttctgaatcggaatgccaagacaaagagaaagattggtttttgtcattgaagaaatgtgcagctgcagtagcattgtcggttagtttgattagtggactacctggatcgcaatggttgggtcctgctcatgcgagcaccccagcattgccagatgtctctgtattgatctcagggccaccaattaaggatccaggggcgttattgaggtatgcattgcctatagacaacaaggcgataagagaagtccaaaaaccccttgaagatattactgatagtctcaagattgctggtgtcaaggcgcttgactctgttgaaagaaatacaagacaagcatctcgagctctcaaggaagggaaaaccttgattatttcaggagtagctaagtcaaagactgaccacgctattgaattgctaaacaaactagaagctgggttaggtgagcttcaacaaattgttgaagacaggactcgagatgctgttgcacctaaacagaangaattgcttaac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0236E02-u8qcS/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0236E02.1" temp_strand="-" temp_description="C02HBa0236E02.1  AC215430.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0236E02 sequenced_by:kribb upload_account_name:korea">
        <position start="85969" stop="84230"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="85669" g_stop="85435" g_length="235"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="235" r_length="235" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="85434" i_stop="85119" i_length="316">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.969" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="85118" g_stop="84828" g_length="291"/>
          <reference_exon_boundary r_type="cDNA" r_start="236" r_stop="526" r_length="291" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="84827" i_stop="84719" i_length="109">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.990" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="84718" g_stop="84530" g_length="189"/>
          <reference_exon_boundary r_type="cDNA" r_start="527" r_stop="715" r_length="189" r_score="0.995"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0236E02.1" gen_strand="-" ref_id="SGN-E347481" ref_strand="+">
        <total_alignment_score>0.999</total_alignment_score>
        <cumulative_length_of_scored_exons>715</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0236E02.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E347481" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="85669" e_stop="85435"/>
          <exon e_start="85118" e_stop="84828"/>
          <exon e_start="84718" e_stop="84530"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCCTCTAGAATTGCTTGACTGTGTAAACAAACTAGTTGTAAATTCATCAATGGCAGCATCTGTTTCCTGCCACTATTTTTCTTCCCCATTAACAACTTCCACCAAATCCATCAAGCCTAAGCTCAATTACAGCCATTTCGCACCTGCTCTTAGTAAAGGATCGATCCGCCATTTTGTTCCACTATGTTCTTCACAACGCTCGCTTCCTTCTGAATCGGAATGCCAAGACAAAGAGGCAAGTTCTATTATTCTCCTTCACTTTTTTTTTTATAAAAAAAATAGACGTTCATTAGTTCGAAATGAGTTAATGGAAATTCAAATATCTAAATGAGAAGTTTGAGTGTACAATTGCATCTATTACTTCGTACTTTAGTATAAAAAAATCGACTATATGCATATGTAGTTTAAGCCGAATCCACTGCCTCAGTTATACAATGTTAGCATTTGTAAGTAATGACAAGACTGCAGTTGGTAGTTCTTTCTAAAGTTCTCAAGTGTGTGTTCTTAATAAGTAGGAACTTATATGATGAAGATTTTTCCCAAACCTGCAGAAAGATTGGTTTTTGTCATTGAAGAAATGTGCAGCTGCAGTAGCATTGTCGGTTAGTTTGATTAGTGGACTACCTGGATCGCAATGGTTGGGTCCTGCTCATGCGAGCACCCCAGCATTGCCAGATGTCTCTGTATTGATCTCAGGGCCACCAATTAAGGATCCAGGGGCGTTATTGAGGTATGCATTGCCTATAGACAACAAGGCGATAAGAGAAGTCCAAAAACCCCTTGAAGATATTACTGATAGTCTCAAGATTGCTGGTGTCAAGGCGCTTGACTCTGTTGAAAGAGTAAGATGTCATTTGCTTAGTTGTTCCCACTTTGATAATTTATTGGCTTGAATCTACTTATTAATGTAGTTCTAGATTCGTAATGGTGGTTCGTATTTTAACTGTGTAGAATACAAGACAAGCATCTCGAGCTCTCAAGGAAGGGAAAACCTTGATTATTTCAGGAGTAGCTAAGTCAAAGACTGACCACGCTATTGAATTGCTAAACAAACTAGAAGCTGGGTTAGGTGAGCTTCAACAAATTGTTGAAGACAGGACTCGAGATGCTGTTGCACCTAAACAGAAGGAATTGCTTAAC</genome_strand>
        <mrna_strand>TCCTCTAGAATTGCTTGACTGTGTAAACAAACTAGTTGTAAATTCATCAATGGCAGCATCTGTTTCCTGCCACTATTTTTCTTCCCCATTAACAACTTCCACCAAATCCATCAAGCCTAAGCTCAATTACAGCCATTTCGCACCTGCTCTTAGTAAAGGATCGATCCGCCATTTTGTTCCACTATGTTCTTCACAACGCTCGCTTCCTTCTGAATCGGAATGCCAAGACAAAGAG............................................................................................................................................................................................................................................................................................................................AAAGATTGGTTTTTGTCATTGAAGAAATGTGCAGCTGCAGTAGCATTGTCGGTTAGTTTGATTAGTGGACTACCTGGATCGCAATGGTTGGGTCCTGCTCATGCGAGCACCCCAGCATTGCCAGATGTCTCTGTATTGATCTCAGGGCCACCAATTAAGGATCCAGGGGCGTTATTGAGGTATGCATTGCCTATAGACAACAAGGCGATAAGAGAAGTCCAAAAACCCCTTGAAGATATTACTGATAGTCTCAAGATTGCTGGTGTCAAGGCGCTTGACTCTGTTGAAAGA.............................................................................................................AATACAAGACAAGCATCTCGAGCTCTCAAGGAAGGGAAAACCTTGATTATTTCAGGAGTAGCTAAGTCAAAGACTGACCACGCTATTGAATTGCTAAACAAACTAGAAGCTGGGTTAGGTGAGCTTCAACAAATTGTTGAAGACAGGACTCGAGATGCTGTTGCACCTAAACAGAANGAATTGCTTAAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0236E02-u8qcS/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E342959" ref_strand="+" ref_description="SGN-E342959 [cTOF-11-B10]">
      <seq>tagaattgcttgactgtgtaaacaaactagttgtaaattcatcaatggcagcatctgtttcctgccactatttttcttccccattaacaacttccaccaaatccatcaagcctaagctcaattacagccatttcgcacctgctcttagtaaaggatcgatccgccattttgttccactatgttcttcacaacgctcgcttccttctgaatcggaatgccaagacaaagagaaagattggtttttgtcattgaagaaatgtgcagctgcagtagcattgtcggttagtttgattagtggactacctggatcgcaatggttgggtcctgctcatgcgagcaccccagcattgccagatgtctctgtattgatctcagggccaccaattaaggatccaggggcgttattgaggtatgcattgcctatagacaacaaggcgataagagaagtccaaaaaccccttgaagatattactgatagtctcaagattgctggtgtcaaggcgcttgactctgttgaaagaaatacaagacaagcatctcgagctctcaaggaagggaaaaccttgattatttcaggagtagctaagtcaaagactgaccacgctattgaattgctaaacaaactagaaagctggttaggtgagcttcaacaaattgttgaagacaggactcgagatgctgntgcacctaaacagaaggaattgcttaac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0236E02-u8qcS/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0236E02.1" temp_strand="-" temp_description="C02HBa0236E02.1  AC215430.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0236E02 sequenced_by:kribb upload_account_name:korea">
        <position start="85964" stop="84230"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="85664" g_stop="85435" g_length="230"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="230" r_length="230" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="85434" i_stop="85119" i_length="316">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.969" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="85118" g_stop="84828" g_length="291"/>
          <reference_exon_boundary r_type="cDNA" r_start="231" r_stop="521" r_length="291" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="84827" i_stop="84719" i_length="109">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.990" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="84718" g_stop="84530" g_length="189"/>
          <reference_exon_boundary r_type="cDNA" r_start="522" r_stop="710" r_length="189" r_score="0.974"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0236E02.1" gen_strand="-" ref_id="SGN-E342959" ref_strand="+">
        <total_alignment_score>0.993</total_alignment_score>
        <cumulative_length_of_scored_exons>710</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0236E02.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E342959" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="85664" e_stop="85435"/>
          <exon e_start="85118" e_stop="84828"/>
          <exon e_start="84718" e_stop="84530"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TAGAATTGCTTGACTGTGTAAACAAACTAGTTGTAAATTCATCAATGGCAGCATCTGTTTCCTGCCACTATTTTTCTTCCCCATTAACAACTTCCACCAAATCCATCAAGCCTAAGCTCAATTACAGCCATTTCGCACCTGCTCTTAGTAAAGGATCGATCCGCCATTTTGTTCCACTATGTTCTTCACAACGCTCGCTTCCTTCTGAATCGGAATGCCAAGACAAAGAGGCAAGTTCTATTATTCTCCTTCACTTTTTTTTTTATAAAAAAAATAGACGTTCATTAGTTCGAAATGAGTTAATGGAAATTCAAATATCTAAATGAGAAGTTTGAGTGTACAATTGCATCTATTACTTCGTACTTTAGTATAAAAAAATCGACTATATGCATATGTAGTTTAAGCCGAATCCACTGCCTCAGTTATACAATGTTAGCATTTGTAAGTAATGACAAGACTGCAGTTGGTAGTTCTTTCTAAAGTTCTCAAGTGTGTGTTCTTAATAAGTAGGAACTTATATGATGAAGATTTTTCCCAAACCTGCAGAAAGATTGGTTTTTGTCATTGAAGAAATGTGCAGCTGCAGTAGCATTGTCGGTTAGTTTGATTAGTGGACTACCTGGATCGCAATGGTTGGGTCCTGCTCATGCGAGCACCCCAGCATTGCCAGATGTCTCTGTATTGATCTCAGGGCCACCAATTAAGGATCCAGGGGCGTTATTGAGGTATGCATTGCCTATAGACAACAAGGCGATAAGAGAAGTCCAAAAACCCCTTGAAGATATTACTGATAGTCTCAAGATTGCTGGTGTCAAGGCGCTTGACTCTGTTGAAAGAGTAAGATGTCATTTGCTTAGTTGTTCCCACTTTGATAATTTATTGGCTTGAATCTACTTATTAATGTAGTTCTAGATTCGTAATGGTGGTTCGTATTTTAACTGTGTAGAATACAAGACAAGCATCTCGAGCTCTCAAGGAAGGGAAAACCTTGATTATTTCAGGAGTAGCTAAGTCAAAGACTGACCACGCTATTGAATTGCTAAACAAACTAGAAGCTGGGTTAGGTGAGCTTCAACAAATTGTTGAAGACAGGACTCGAGATGCTGTTGCACCTAAACAGAAGGAATTGCTTAAC</genome_strand>
        <mrna_strand>TAGAATTGCTTGACTGTGTAAACAAACTAGTTGTAAATTCATCAATGGCAGCATCTGTTTCCTGCCACTATTTTTCTTCCCCATTAACAACTTCCACCAAATCCATCAAGCCTAAGCTCAATTACAGCCATTTCGCACCTGCTCTTAGTAAAGGATCGATCCGCCATTTTGTTCCACTATGTTCTTCACAACGCTCGCTTCCTTCTGAATCGGAATGCCAAGACAAAGAG............................................................................................................................................................................................................................................................................................................................AAAGATTGGTTTTTGTCATTGAAGAAATGTGCAGCTGCAGTAGCATTGTCGGTTAGTTTGATTAGTGGACTACCTGGATCGCAATGGTTGGGTCCTGCTCATGCGAGCACCCCAGCATTGCCAGATGTCTCTGTATTGATCTCAGGGCCACCAATTAAGGATCCAGGGGCGTTATTGAGGTATGCATTGCCTATAGACAACAAGGCGATAAGAGAAGTCCAAAAACCCCTTGAAGATATTACTGATAGTCTCAAGATTGCTGGTGTCAAGGCGCTTGACTCTGTTGAAAGA.............................................................................................................AATACAAGACAAGCATCTCGAGCTCTCAAGGAAGGGAAAACCTTGATTATTTCAGGAGTAGCTAAGTCAAAGACTGACCACGCTATTGAATTGCTAAACAAACTAGAAAGCTGGTTAGGTGAGCTTCAACAAATTGTTGAAGACAGGACTCGAGATGCTGNTGCACCTAAACAGAAGGAATTGCTTAAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0236E02-u8qcS/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E320309" ref_strand="+" ref_description="SGN-E320309 [cTOB-21-J12]">
      <seq>ccaaatgtcctctagaattgcttgactgtgtaaacaaactagttgtaaattcatcaatggcagcatctgtttcctgccactatttttcttccccattaacaacttccaccaaatccatcaagcctaagctcaattacagccatttcgcacctgctcttagtaaaggatcgatccgccattttgttccactatgttcttcacaacgctcgcttccttctgaatcggaatgccaagacaaagagaaagattggtttttgtcattgaagaaatgtgcagctgcagtagcattgtcggttagtttgattagtggactacctggatcgcaatggttgggtcctgctcatgcgagcaccccagcattgccagatgtctctgtattgatctcagggccaccaattaaggatccaggggcgttattgaggtatgcattgcctatagacaacaaggcgataagagaagtccaaaaaccccttgaagatattactgatagtctcaagattgctggtgtcaaggcgcttgactctgttgaaagaatacaagacaagcatctcgagctctcaaggaaaggaaaaccnttgattattcangagtagctaagtcaaagactgaccacgctattgaattgctaaacaaact</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0236E02-u8qcS/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0236E02.1" temp_strand="-" temp_description="C02HBa0236E02.1  AC215430.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0236E02 sequenced_by:kribb upload_account_name:korea">
        <position start="85976" stop="84315"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="85676" g_stop="85435" g_length="242"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="242" r_length="242" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="85434" i_stop="85119" i_length="316">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.969" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="85118" g_stop="84828" g_length="291"/>
          <reference_exon_boundary r_type="cDNA" r_start="243" r_stop="532" r_length="290" r_score="0.997"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="84827" i_stop="84719" i_length="109">
            <donor d_prob="0.997" d_score="0.98"/>
            <acceptor a_prob="0.990" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="84718" g_stop="84615" g_length="104"/>
          <reference_exon_boundary r_type="cDNA" r_start="533" r_stop="636" r_length="104" r_score="0.952"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0236E02.1" gen_strand="-" ref_id="SGN-E320309" ref_strand="+">
        <total_alignment_score>0.991</total_alignment_score>
        <cumulative_length_of_scored_exons>637</cumulative_length_of_scored_exons>
        <coverage percentage="1.002" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0236E02.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E320309" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="85676" e_stop="85435"/>
          <exon e_start="85118" e_stop="84828"/>
          <exon e_start="84718" e_stop="84615"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCAAATGTCCTCTAGAATTGCTTGACTGTGTAAACAAACTAGTTGTAAATTCATCAATGGCAGCATCTGTTTCCTGCCACTATTTTTCTTCCCCATTAACAACTTCCACCAAATCCATCAAGCCTAAGCTCAATTACAGCCATTTCGCACCTGCTCTTAGTAAAGGATCGATCCGCCATTTTGTTCCACTATGTTCTTCACAACGCTCGCTTCCTTCTGAATCGGAATGCCAAGACAAAGAGGCAAGTTCTATTATTCTCCTTCACTTTTTTTTTTATAAAAAAAATAGACGTTCATTAGTTCGAAATGAGTTAATGGAAATTCAAATATCTAAATGAGAAGTTTGAGTGTACAATTGCATCTATTACTTCGTACTTTAGTATAAAAAAATCGACTATATGCATATGTAGTTTAAGCCGAATCCACTGCCTCAGTTATACAATGTTAGCATTTGTAAGTAATGACAAGACTGCAGTTGGTAGTTCTTTCTAAAGTTCTCAAGTGTGTGTTCTTAATAAGTAGGAACTTATATGATGAAGATTTTTCCCAAACCTGCAGAAAGATTGGTTTTTGTCATTGAAGAAATGTGCAGCTGCAGTAGCATTGTCGGTTAGTTTGATTAGTGGACTACCTGGATCGCAATGGTTGGGTCCTGCTCATGCGAGCACCCCAGCATTGCCAGATGTCTCTGTATTGATCTCAGGGCCACCAATTAAGGATCCAGGGGCGTTATTGAGGTATGCATTGCCTATAGACAACAAGGCGATAAGAGAAGTCCAAAAACCCCTTGAAGATATTACTGATAGTCTCAAGATTGCTGGTGTCAAGGCGCTTGACTCTGTTGAAAGAGTAAGATGTCATTTGCTTAGTTGTTCCCACTTTGATAATTTATTGGCTTGAATCTACTTATTAATGTAGTTCTAGATTCGTAATGGTGGTTCGTATTTTAACTGTGTAGAATACAAGACAAGCATCTCGAGCTCTCAAGGAAGGGAAAACC-TTGATTATTTCAGGAGTAGCTAAGTCAAAGACTGACCACGCTATTGAATTGCTAAACAAACT</genome_strand>
        <mrna_strand>CCAAATGTCCTCTAGAATTGCTTGACTGTGTAAACAAACTAGTTGTAAATTCATCAATGGCAGCATCTGTTTCCTGCCACTATTTTTCTTCCCCATTAACAACTTCCACCAAATCCATCAAGCCTAAGCTCAATTACAGCCATTTCGCACCTGCTCTTAGTAAAGGATCGATCCGCCATTTTGTTCCACTATGTTCTTCACAACGCTCGCTTCCTTCTGAATCGGAATGCCAAGACAAAGAG............................................................................................................................................................................................................................................................................................................................AAAGATTGGTTTTTGTCATTGAAGAAATGTGCAGCTGCAGTAGCATTGTCGGTTAGTTTGATTAGTGGACTACCTGGATCGCAATGGTTGGGTCCTGCTCATGCGAGCACCCCAGCATTGCCAGATGTCTCTGTATTGATCTCAGGGCCACCAATTAAGGATCCAGGGGCGTTATTGAGGTATGCATTGCCTATAGACAACAAGGCGATAAGAGAAGTCCAAAAACCCCTTGAAGATATTACTGATAGTCTCAAGATTGCTGGTGTCAAGGCGCTTGACTCTGTTGAAAG-.............................................................................................................AATACAAGACAAGCATCTCGAGCTCTCAAGGAAAGGAAAACCNTTGATTA-TTCANGAGTAGCTAAGTCAAAGACTGACCACGCTATTGAATTGCTAAACAAACT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0236E02-u8qcS/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E728790" ref_strand="+" ref_description="SGN-E728790 [LA18DH03]">
      <seq>ctgtgtaaacaaactagttgtaaattcatcaatggcagcatctgtttcctgccactatttttcttccccattaacaacttccaccaaatccatcaagcctaagctcaattacagccatttcgcacctgctcttagtaaaggatcgatccgccattttgttccactatgttcttcacaacgctcgcttccttctgaatcggaatgccaagacaaagagaaagattggtttttgtcattgaagaaatgtgcagctgcagtagcattgtcggttagtttgattagtggactacctggatcgcaatggttgggtcctgctcatgcgagcaccccagcattgccagatgtctctgtattgatctcagggccaccaattaaggatccaggggcgttattgaggtatgcattgcctatagacaacaaggcgataagagaagtccaaaaaccccttgaagatattactgatagtctcaagattgctggtgtcaaggcgcttgactctgttgaaagaaatacaagacaagcatctcgagctctcaaggaagggaaaaccttgattatttcaggagtagctaagtcaaagactgaccacg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0236E02-u8qcS/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0236E02.1" temp_strand="-" temp_description="C02HBa0236E02.1  AC215430.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0236E02 sequenced_by:kribb upload_account_name:korea">
        <position start="85951" stop="84337"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="85651" g_stop="85435" g_length="217"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="217" r_length="217" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="85434" i_stop="85119" i_length="316">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.969" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="85118" g_stop="84828" g_length="291"/>
          <reference_exon_boundary r_type="cDNA" r_start="218" r_stop="508" r_length="291" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="84827" i_stop="84719" i_length="109">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.990" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="84718" g_stop="84637" g_length="82"/>
          <reference_exon_boundary r_type="cDNA" r_start="509" r_stop="590" r_length="82" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0236E02.1" gen_strand="-" ref_id="SGN-E728790" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>590</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0236E02.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E728790" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="85651" e_stop="85435"/>
          <exon e_start="85118" e_stop="84828"/>
          <exon e_start="84718" e_stop="84637"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTGTGTAAACAAACTAGTTGTAAATTCATCAATGGCAGCATCTGTTTCCTGCCACTATTTTTCTTCCCCATTAACAACTTCCACCAAATCCATCAAGCCTAAGCTCAATTACAGCCATTTCGCACCTGCTCTTAGTAAAGGATCGATCCGCCATTTTGTTCCACTATGTTCTTCACAACGCTCGCTTCCTTCTGAATCGGAATGCCAAGACAAAGAGGCAAGTTCTATTATTCTCCTTCACTTTTTTTTTTATAAAAAAAATAGACGTTCATTAGTTCGAAATGAGTTAATGGAAATTCAAATATCTAAATGAGAAGTTTGAGTGTACAATTGCATCTATTACTTCGTACTTTAGTATAAAAAAATCGACTATATGCATATGTAGTTTAAGCCGAATCCACTGCCTCAGTTATACAATGTTAGCATTTGTAAGTAATGACAAGACTGCAGTTGGTAGTTCTTTCTAAAGTTCTCAAGTGTGTGTTCTTAATAAGTAGGAACTTATATGATGAAGATTTTTCCCAAACCTGCAGAAAGATTGGTTTTTGTCATTGAAGAAATGTGCAGCTGCAGTAGCATTGTCGGTTAGTTTGATTAGTGGACTACCTGGATCGCAATGGTTGGGTCCTGCTCATGCGAGCACCCCAGCATTGCCAGATGTCTCTGTATTGATCTCAGGGCCACCAATTAAGGATCCAGGGGCGTTATTGAGGTATGCATTGCCTATAGACAACAAGGCGATAAGAGAAGTCCAAAAACCCCTTGAAGATATTACTGATAGTCTCAAGATTGCTGGTGTCAAGGCGCTTGACTCTGTTGAAAGAGTAAGATGTCATTTGCTTAGTTGTTCCCACTTTGATAATTTATTGGCTTGAATCTACTTATTAATGTAGTTCTAGATTCGTAATGGTGGTTCGTATTTTAACTGTGTAGAATACAAGACAAGCATCTCGAGCTCTCAAGGAAGGGAAAACCTTGATTATTTCAGGAGTAGCTAAGTCAAAGACTGACCACG</genome_strand>
        <mrna_strand>CTGTGTAAACAAACTAGTTGTAAATTCATCAATGGCAGCATCTGTTTCCTGCCACTATTTTTCTTCCCCATTAACAACTTCCACCAAATCCATCAAGCCTAAGCTCAATTACAGCCATTTCGCACCTGCTCTTAGTAAAGGATCGATCCGCCATTTTGTTCCACTATGTTCTTCACAACGCTCGCTTCCTTCTGAATCGGAATGCCAAGACAAAGAG............................................................................................................................................................................................................................................................................................................................AAAGATTGGTTTTTGTCATTGAAGAAATGTGCAGCTGCAGTAGCATTGTCGGTTAGTTTGATTAGTGGACTACCTGGATCGCAATGGTTGGGTCCTGCTCATGCGAGCACCCCAGCATTGCCAGATGTCTCTGTATTGATCTCAGGGCCACCAATTAAGGATCCAGGGGCGTTATTGAGGTATGCATTGCCTATAGACAACAAGGCGATAAGAGAAGTCCAAAAACCCCTTGAAGATATTACTGATAGTCTCAAGATTGCTGGTGTCAAGGCGCTTGACTCTGTTGAAAGA.............................................................................................................AATACAAGACAAGCATCTCGAGCTCTCAAGGAAGGGAAAACCTTGATTATTTCAGGAGTAGCTAAGTCAAAGACTGACCACG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0236E02-u8qcS/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E339835" ref_strand="+" ref_description="SGN-E339835 [cTOF-3-G1]">
      <seq>tcctctagaattgcttgactgtgtaaacaaactagttgtaaattcatcaatggcagcatctgtttcctgccactatttttcttccccattaacaacttccaccaaatccatcaagcctaagctcaattacagccatttcgcacctgctcttagtaaaggatcgatccgccattttgttccactatgttcttcacaacgctcgcttccttctgaatcggaatgccaagacaaagagaaagattggtttttgtcattgaagaaatgtgcagctgcagtagcattgtcggttagtttgattagtggactacctggatcgcaatggttgggtcctgctcatgcgagcaccccagcattgccagatgtctctgtattgatctcagggccaccaattaaggatccaggggcgttattgaggtatgcattgcctatagacaacaaggcgataagagaagtccaaaaaccccttgaagatattactgatagtctcaagattgctggtgtcaaggcgcttgactctgttgaaagaaatacaagacaagcatctcgagctctcaaggaagggaaaacc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0236E02-u8qcS/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0236E02.1" temp_strand="-" temp_description="C02HBa0236E02.1  AC215430.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0236E02 sequenced_by:kribb upload_account_name:korea">
        <position start="85969" stop="84377"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="85669" g_stop="85435" g_length="235"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="235" r_length="235" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="85434" i_stop="85119" i_length="316">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.969" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="85118" g_stop="84828" g_length="291"/>
          <reference_exon_boundary r_type="cDNA" r_start="236" r_stop="526" r_length="291" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="84827" i_stop="84719" i_length="109">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.990" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="84718" g_stop="84677" g_length="42"/>
          <reference_exon_boundary r_type="cDNA" r_start="527" r_stop="568" r_length="42" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0236E02.1" gen_strand="-" ref_id="SGN-E339835" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>568</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0236E02.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E339835" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="85669" e_stop="85435"/>
          <exon e_start="85118" e_stop="84828"/>
          <exon e_start="84718" e_stop="84677"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCCTCTAGAATTGCTTGACTGTGTAAACAAACTAGTTGTAAATTCATCAATGGCAGCATCTGTTTCCTGCCACTATTTTTCTTCCCCATTAACAACTTCCACCAAATCCATCAAGCCTAAGCTCAATTACAGCCATTTCGCACCTGCTCTTAGTAAAGGATCGATCCGCCATTTTGTTCCACTATGTTCTTCACAACGCTCGCTTCCTTCTGAATCGGAATGCCAAGACAAAGAGGCAAGTTCTATTATTCTCCTTCACTTTTTTTTTTATAAAAAAAATAGACGTTCATTAGTTCGAAATGAGTTAATGGAAATTCAAATATCTAAATGAGAAGTTTGAGTGTACAATTGCATCTATTACTTCGTACTTTAGTATAAAAAAATCGACTATATGCATATGTAGTTTAAGCCGAATCCACTGCCTCAGTTATACAATGTTAGCATTTGTAAGTAATGACAAGACTGCAGTTGGTAGTTCTTTCTAAAGTTCTCAAGTGTGTGTTCTTAATAAGTAGGAACTTATATGATGAAGATTTTTCCCAAACCTGCAGAAAGATTGGTTTTTGTCATTGAAGAAATGTGCAGCTGCAGTAGCATTGTCGGTTAGTTTGATTAGTGGACTACCTGGATCGCAATGGTTGGGTCCTGCTCATGCGAGCACCCCAGCATTGCCAGATGTCTCTGTATTGATCTCAGGGCCACCAATTAAGGATCCAGGGGCGTTATTGAGGTATGCATTGCCTATAGACAACAAGGCGATAAGAGAAGTCCAAAAACCCCTTGAAGATATTACTGATAGTCTCAAGATTGCTGGTGTCAAGGCGCTTGACTCTGTTGAAAGAGTAAGATGTCATTTGCTTAGTTGTTCCCACTTTGATAATTTATTGGCTTGAATCTACTTATTAATGTAGTTCTAGATTCGTAATGGTGGTTCGTATTTTAACTGTGTAGAATACAAGACAAGCATCTCGAGCTCTCAAGGAAGGGAAAACC</genome_strand>
        <mrna_strand>TCCTCTAGAATTGCTTGACTGTGTAAACAAACTAGTTGTAAATTCATCAATGGCAGCATCTGTTTCCTGCCACTATTTTTCTTCCCCATTAACAACTTCCACCAAATCCATCAAGCCTAAGCTCAATTACAGCCATTTCGCACCTGCTCTTAGTAAAGGATCGATCCGCCATTTTGTTCCACTATGTTCTTCACAACGCTCGCTTCCTTCTGAATCGGAATGCCAAGACAAAGAG............................................................................................................................................................................................................................................................................................................................AAAGATTGGTTTTTGTCATTGAAGAAATGTGCAGCTGCAGTAGCATTGTCGGTTAGTTTGATTAGTGGACTACCTGGATCGCAATGGTTGGGTCCTGCTCATGCGAGCACCCCAGCATTGCCAGATGTCTCTGTATTGATCTCAGGGCCACCAATTAAGGATCCAGGGGCGTTATTGAGGTATGCATTGCCTATAGACAACAAGGCGATAAGAGAAGTCCAAAAACCCCTTGAAGATATTACTGATAGTCTCAAGATTGCTGGTGTCAAGGCGCTTGACTCTGTTGAAAGA.............................................................................................................AATACAAGACAAGCATCTCGAGCTCTCAAGGAAGGGAAAACC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0236E02-u8qcS/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E366821" ref_strand="+" ref_description="SGN-E366821 [cLPT-6-E18]">
      <seq>ccaaatgtcctctagaattgcttgactgtgtaaacaaactagttgtaaattcatcaatggcagcatctgtttcctgccactatttttcttccccattaacaacttccaccaaatccatcaagcctaagctcaattacagccatttcgcacctgctcttagtaaaggatcgatccgccattttgttccactatgttcttcacaaagctcgcttccttctgaatctgaatgccaagacaaagagaaagattggtttttgtcattgaagaaatgtgcagctgcagttgcattgtcagttagtttgattagtggactacctggatcgcaatggttgggtcctgctcatgcgagcaccccagcattgccagatgtctctgtattgatctcagggccaccgattaaggatccaggggcgttattgaggtatgcattgcctatagacaacaaggcgataagagaagtccaaaaaccccttgaagatattactgatagtctcaagattgctggtgtcaaggcgcttgactctgttgaaagaaatacaagacaagcatctcgagctc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0236E02-u8qcS/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0236E02.1" temp_strand="-" temp_description="C02HBa0236E02.1  AC215430.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0236E02 sequenced_by:kribb upload_account_name:korea">
        <position start="85976" stop="84394"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="85676" g_stop="85435" g_length="242"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="242" r_length="242" r_score="0.992"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="85434" i_stop="85119" i_length="316">
            <donor d_prob="1.000" d_score="0.96"/>
            <acceptor a_prob="0.969" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="85118" g_stop="84828" g_length="291"/>
          <reference_exon_boundary r_type="cDNA" r_start="243" r_stop="533" r_length="291" r_score="0.990"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="84827" i_stop="84719" i_length="109">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.990" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="84718" g_stop="84694" g_length="25"/>
          <reference_exon_boundary r_type="cDNA" r_start="534" r_stop="558" r_length="25" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0236E02.1" gen_strand="-" ref_id="SGN-E366821" ref_strand="+">
        <total_alignment_score>0.991</total_alignment_score>
        <cumulative_length_of_scored_exons>558</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0236E02.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E366821" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="85676" e_stop="85435"/>
          <exon e_start="85118" e_stop="84828"/>
          <exon e_start="84718" e_stop="84694"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCAAATGTCCTCTAGAATTGCTTGACTGTGTAAACAAACTAGTTGTAAATTCATCAATGGCAGCATCTGTTTCCTGCCACTATTTTTCTTCCCCATTAACAACTTCCACCAAATCCATCAAGCCTAAGCTCAATTACAGCCATTTCGCACCTGCTCTTAGTAAAGGATCGATCCGCCATTTTGTTCCACTATGTTCTTCACAACGCTCGCTTCCTTCTGAATCGGAATGCCAAGACAAAGAGGCAAGTTCTATTATTCTCCTTCACTTTTTTTTTTATAAAAAAAATAGACGTTCATTAGTTCGAAATGAGTTAATGGAAATTCAAATATCTAAATGAGAAGTTTGAGTGTACAATTGCATCTATTACTTCGTACTTTAGTATAAAAAAATCGACTATATGCATATGTAGTTTAAGCCGAATCCACTGCCTCAGTTATACAATGTTAGCATTTGTAAGTAATGACAAGACTGCAGTTGGTAGTTCTTTCTAAAGTTCTCAAGTGTGTGTTCTTAATAAGTAGGAACTTATATGATGAAGATTTTTCCCAAACCTGCAGAAAGATTGGTTTTTGTCATTGAAGAAATGTGCAGCTGCAGTAGCATTGTCGGTTAGTTTGATTAGTGGACTACCTGGATCGCAATGGTTGGGTCCTGCTCATGCGAGCACCCCAGCATTGCCAGATGTCTCTGTATTGATCTCAGGGCCACCAATTAAGGATCCAGGGGCGTTATTGAGGTATGCATTGCCTATAGACAACAAGGCGATAAGAGAAGTCCAAAAACCCCTTGAAGATATTACTGATAGTCTCAAGATTGCTGGTGTCAAGGCGCTTGACTCTGTTGAAAGAGTAAGATGTCATTTGCTTAGTTGTTCCCACTTTGATAATTTATTGGCTTGAATCTACTTATTAATGTAGTTCTAGATTCGTAATGGTGGTTCGTATTTTAACTGTGTAGAATACAAGACAAGCATCTCGAGCTC</genome_strand>
        <mrna_strand>CCAAATGTCCTCTAGAATTGCTTGACTGTGTAAACAAACTAGTTGTAAATTCATCAATGGCAGCATCTGTTTCCTGCCACTATTTTTCTTCCCCATTAACAACTTCCACCAAATCCATCAAGCCTAAGCTCAATTACAGCCATTTCGCACCTGCTCTTAGTAAAGGATCGATCCGCCATTTTGTTCCACTATGTTCTTCACAAAGCTCGCTTCCTTCTGAATCTGAATGCCAAGACAAAGAG............................................................................................................................................................................................................................................................................................................................AAAGATTGGTTTTTGTCATTGAAGAAATGTGCAGCTGCAGTTGCATTGTCAGTTAGTTTGATTAGTGGACTACCTGGATCGCAATGGTTGGGTCCTGCTCATGCGAGCACCCCAGCATTGCCAGATGTCTCTGTATTGATCTCAGGGCCACCGATTAAGGATCCAGGGGCGTTATTGAGGTATGCATTGCCTATAGACAACAAGGCGATAAGAGAAGTCCAAAAACCCCTTGAAGATATTACTGATAGTCTCAAGATTGCTGGTGTCAAGGCGCTTGACTCTGTTGAAAGA.............................................................................................................AATACAAGACAAGCATCTCGAGCTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0236E02-u8qcS/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E366126" ref_strand="+" ref_description="SGN-E366126 [cLPT-15-J9]">
      <seq>tagaattgcttgactgtgtaaacaaactagttgtaaattcatgaatggcagcatctgtttcctgccactatttttcttccccattaacaacttccaccaaatccatcaagcctaagctcaattacagccatttcgcacctgctcttaataaaggatcgatccgccattttgttccactatgttcttcacaaagctcgctttcttatgaatctgaatgccaagacaaagagaaagattggtttttgtcattgaagaaatgtgcagctgcagttgcattgtcagttagtttgattagtggactacctggatcgcaatggttgggtcctgctcatgcgagcaccccagcattgccagatgtctctggattgatctcagggccaccgattaaggatccacgggcgttattgaggtatgcattgcctatagacaacaaggcgataagagaagtccaaaaaccccttgaagatattactgatagtctcaagattgctggtgtcaaggcgcttgactctgctgaaagaaatacaagacaagcatctcgagc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0236E02-u8qcS/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0236E02.1" temp_strand="-" temp_description="C02HBa0236E02.1  AC215430.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0236E02 sequenced_by:kribb upload_account_name:korea">
        <position start="85964" stop="84396"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="85664" g_stop="85435" g_length="230"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="230" r_length="230" r_score="0.974"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="85434" i_stop="85119" i_length="316">
            <donor d_prob="1.000" d_score="0.92"/>
            <acceptor a_prob="0.969" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="85118" g_stop="84828" g_length="291"/>
          <reference_exon_boundary r_type="cDNA" r_start="231" r_stop="521" r_length="291" r_score="0.979"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="84827" i_stop="84719" i_length="109">
            <donor d_prob="0.997" d_score="0.98"/>
            <acceptor a_prob="0.990" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="84718" g_stop="84696" g_length="23"/>
          <reference_exon_boundary r_type="cDNA" r_start="522" r_stop="544" r_length="23" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0236E02.1" gen_strand="-" ref_id="SGN-E366126" ref_strand="+">
        <total_alignment_score>0.977</total_alignment_score>
        <cumulative_length_of_scored_exons>544</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0236E02.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E366126" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="85664" e_stop="85435"/>
          <exon e_start="85118" e_stop="84828"/>
          <exon e_start="84718" e_stop="84696"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TAGAATTGCTTGACTGTGTAAACAAACTAGTTGTAAATTCATCAATGGCAGCATCTGTTTCCTGCCACTATTTTTCTTCCCCATTAACAACTTCCACCAAATCCATCAAGCCTAAGCTCAATTACAGCCATTTCGCACCTGCTCTTAGTAAAGGATCGATCCGCCATTTTGTTCCACTATGTTCTTCACAACGCTCGCTTCCTTCTGAATCGGAATGCCAAGACAAAGAGGCAAGTTCTATTATTCTCCTTCACTTTTTTTTTTATAAAAAAAATAGACGTTCATTAGTTCGAAATGAGTTAATGGAAATTCAAATATCTAAATGAGAAGTTTGAGTGTACAATTGCATCTATTACTTCGTACTTTAGTATAAAAAAATCGACTATATGCATATGTAGTTTAAGCCGAATCCACTGCCTCAGTTATACAATGTTAGCATTTGTAAGTAATGACAAGACTGCAGTTGGTAGTTCTTTCTAAAGTTCTCAAGTGTGTGTTCTTAATAAGTAGGAACTTATATGATGAAGATTTTTCCCAAACCTGCAGAAAGATTGGTTTTTGTCATTGAAGAAATGTGCAGCTGCAGTAGCATTGTCGGTTAGTTTGATTAGTGGACTACCTGGATCGCAATGGTTGGGTCCTGCTCATGCGAGCACCCCAGCATTGCCAGATGTCTCTGTATTGATCTCAGGGCCACCAATTAAGGATCCAGGGGCGTTATTGAGGTATGCATTGCCTATAGACAACAAGGCGATAAGAGAAGTCCAAAAACCCCTTGAAGATATTACTGATAGTCTCAAGATTGCTGGTGTCAAGGCGCTTGACTCTGTTGAAAGAGTAAGATGTCATTTGCTTAGTTGTTCCCACTTTGATAATTTATTGGCTTGAATCTACTTATTAATGTAGTTCTAGATTCGTAATGGTGGTTCGTATTTTAACTGTGTAGAATACAAGACAAGCATCTCGAGC</genome_strand>
        <mrna_strand>TAGAATTGCTTGACTGTGTAAACAAACTAGTTGTAAATTCATGAATGGCAGCATCTGTTTCCTGCCACTATTTTTCTTCCCCATTAACAACTTCCACCAAATCCATCAAGCCTAAGCTCAATTACAGCCATTTCGCACCTGCTCTTAATAAAGGATCGATCCGCCATTTTGTTCCACTATGTTCTTCACAAAGCTCGCTTTCTTATGAATCTGAATGCCAAGACAAAGAG............................................................................................................................................................................................................................................................................................................................AAAGATTGGTTTTTGTCATTGAAGAAATGTGCAGCTGCAGTTGCATTGTCAGTTAGTTTGATTAGTGGACTACCTGGATCGCAATGGTTGGGTCCTGCTCATGCGAGCACCCCAGCATTGCCAGATGTCTCTGGATTGATCTCAGGGCCACCGATTAAGGATCCACGGGCGTTATTGAGGTATGCATTGCCTATAGACAACAAGGCGATAAGAGAAGTCCAAAAACCCCTTGAAGATATTACTGATAGTCTCAAGATTGCTGGTGTCAAGGCGCTTGACTCTGCTGAAAGA.............................................................................................................AATACAAGACAAGCATCTCGAGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0236E02-u8qcS/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E725499" ref_strand="+" ref_description="SGN-E725499 [LA03DC10]">
      <seq>aatttttttccctccaaaccccaaatgtcctctagaattgcttgactgtgtaaacaaactagttgtaaattcatcaatggcagcatctgtttcctgccactatttttcttccccattaacaacttccaccaaatccatcaagcctaagctcaattacagccatttcgcacctgctcttagtaaaggatcgatccgccattttgttccactatgttcttcacaacgctcgcttccttctgaatcggaatgccaagacaaagagaaagattggtttttgtcattgaagaaatgtgcagctgcagtagcattgtcggttagtttgattagtggactacctggatcgcaatggttgggtcctgctcatgcgagcaccccagcattgccagatgtctctgtattgatctcagggccaccaattaaggatccaggggcgttattgaggtatgcattgcctatagtacacanggcgataagagtagtccacaaaccccttgaagatattactgatagtctcaagattgctggtgtcaaggcg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0236E02-u8qcS/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0236E02.1" temp_strand="-" temp_description="C02HBa0236E02.1  AC215430.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0236E02 sequenced_by:kribb upload_account_name:korea">
        <position start="85996" stop="84546"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="85696" g_stop="85435" g_length="262"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="262" r_length="262" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="85434" i_stop="85119" i_length="316">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.969" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="85118" g_stop="84846" g_length="273"/>
          <reference_exon_boundary r_type="cDNA" r_start="263" r_stop="535" r_length="273" r_score="0.978"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0236E02.1" gen_strand="-" ref_id="SGN-E725499" ref_strand="+">
        <total_alignment_score>0.989</total_alignment_score>
        <cumulative_length_of_scored_exons>535</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0236E02.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E725499" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="85696" e_stop="85435"/>
          <exon e_start="85118" e_stop="84846"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AATTTTTTTCCCTCCAAACCCCAAATGTCCTCTAGAATTGCTTGACTGTGTAAACAAACTAGTTGTAAATTCATCAATGGCAGCATCTGTTTCCTGCCACTATTTTTCTTCCCCATTAACAACTTCCACCAAATCCATCAAGCCTAAGCTCAATTACAGCCATTTCGCACCTGCTCTTAGTAAAGGATCGATCCGCCATTTTGTTCCACTATGTTCTTCACAACGCTCGCTTCCTTCTGAATCGGAATGCCAAGACAAAGAGGCAAGTTCTATTATTCTCCTTCACTTTTTTTTTTATAAAAAAAATAGACGTTCATTAGTTCGAAATGAGTTAATGGAAATTCAAATATCTAAATGAGAAGTTTGAGTGTACAATTGCATCTATTACTTCGTACTTTAGTATAAAAAAATCGACTATATGCATATGTAGTTTAAGCCGAATCCACTGCCTCAGTTATACAATGTTAGCATTTGTAAGTAATGACAAGACTGCAGTTGGTAGTTCTTTCTAAAGTTCTCAAGTGTGTGTTCTTAATAAGTAGGAACTTATATGATGAAGATTTTTCCCAAACCTGCAGAAAGATTGGTTTTTGTCATTGAAGAAATGTGCAGCTGCAGTAGCATTGTCGGTTAGTTTGATTAGTGGACTACCTGGATCGCAATGGTTGGGTCCTGCTCATGCGAGCACCCCAGCATTGCCAGATGTCTCTGTATTGATCTCAGGGCCACCAATTAAGGATCCAGGGGCGTTATTGAGGTATGCATTGCCTATAGACAACAAGGCGATAAGAGAAGTCCAAAAACCCCTTGAAGATATTACTGATAGTCTCAAGATTGCTGGTGTCAAGGCG</genome_strand>
        <mrna_strand>AATTTTTTTCCCTCCAAACCCCAAATGTCCTCTAGAATTGCTTGACTGTGTAAACAAACTAGTTGTAAATTCATCAATGGCAGCATCTGTTTCCTGCCACTATTTTTCTTCCCCATTAACAACTTCCACCAAATCCATCAAGCCTAAGCTCAATTACAGCCATTTCGCACCTGCTCTTAGTAAAGGATCGATCCGCCATTTTGTTCCACTATGTTCTTCACAACGCTCGCTTCCTTCTGAATCGGAATGCCAAGACAAAGAG............................................................................................................................................................................................................................................................................................................................AAAGATTGGTTTTTGTCATTGAAGAAATGTGCAGCTGCAGTAGCATTGTCGGTTAGTTTGATTAGTGGACTACCTGGATCGCAATGGTTGGGTCCTGCTCATGCGAGCACCCCAGCATTGCCAGATGTCTCTGTATTGATCTCAGGGCCACCAATTAAGGATCCAGGGGCGTTATTGAGGTATGCATTGCCTATAGTACACANGGCGATAAGAGTAGTCCACAAACCCCTTGAAGATATTACTGATAGTCTCAAGATTGCTGGTGTCAAGGCG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0236E02-u8qcS/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E288511" ref_strand="+" ref_description="SGN-E288511 [cLES-8-N17]">
      <seq>tcttcattaataacagttgcattttgtcaatttttttccctccaaaccccaaatgtcctctagaattgcttgactgtgtaaacaaactagttgtaaattcatcaatggcagcatctgtttcctgccactatttttcttccccattaacaacttccaccaaatccatcaagcctaagctcaattacagccatttcgcacctgctcttagtaaaggatcgatccgccattttgttccactatgttcttcacaacgctcgcttccttctgaatcggaatgccaagacaaagagaaagattggtttttgtcattgaagaaatgtgcagctgcagtagcattgtcggttagtttgattagtggactacctggatcgcaatggttgggtcctgctcatgcgagcaccccagcattgccagatgtctctgtattgatctcagggccaccaattaaggatccaggggcgttattgaggtatgcattgcctatagacaacaaggcgataagagaagtccaaaaaccccttgaagatattactgatagtctcaaga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0236E02-u8qcS/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0236E02.1" temp_strand="-" temp_description="C02HBa0236E02.1  AC215430.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0236E02 sequenced_by:kribb upload_account_name:korea">
        <position start="86024" stop="84563"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="85724" g_stop="85435" g_length="290"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="290" r_length="290" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="85434" i_stop="85119" i_length="316">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.969" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="85118" g_stop="84863" g_length="256"/>
          <reference_exon_boundary r_type="cDNA" r_start="291" r_stop="546" r_length="256" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0236E02.1" gen_strand="-" ref_id="SGN-E288511" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>546</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0236E02.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E288511" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="85724" e_stop="85435"/>
          <exon e_start="85118" e_stop="84863"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCTTCATTAATAACAGTTGCATTTTGTCAATTTTTTTCCCTCCAAACCCCAAATGTCCTCTAGAATTGCTTGACTGTGTAAACAAACTAGTTGTAAATTCATCAATGGCAGCATCTGTTTCCTGCCACTATTTTTCTTCCCCATTAACAACTTCCACCAAATCCATCAAGCCTAAGCTCAATTACAGCCATTTCGCACCTGCTCTTAGTAAAGGATCGATCCGCCATTTTGTTCCACTATGTTCTTCACAACGCTCGCTTCCTTCTGAATCGGAATGCCAAGACAAAGAGGCAAGTTCTATTATTCTCCTTCACTTTTTTTTTTATAAAAAAAATAGACGTTCATTAGTTCGAAATGAGTTAATGGAAATTCAAATATCTAAATGAGAAGTTTGAGTGTACAATTGCATCTATTACTTCGTACTTTAGTATAAAAAAATCGACTATATGCATATGTAGTTTAAGCCGAATCCACTGCCTCAGTTATACAATGTTAGCATTTGTAAGTAATGACAAGACTGCAGTTGGTAGTTCTTTCTAAAGTTCTCAAGTGTGTGTTCTTAATAAGTAGGAACTTATATGATGAAGATTTTTCCCAAACCTGCAGAAAGATTGGTTTTTGTCATTGAAGAAATGTGCAGCTGCAGTAGCATTGTCGGTTAGTTTGATTAGTGGACTACCTGGATCGCAATGGTTGGGTCCTGCTCATGCGAGCACCCCAGCATTGCCAGATGTCTCTGTATTGATCTCAGGGCCACCAATTAAGGATCCAGGGGCGTTATTGAGGTATGCATTGCCTATAGACAACAAGGCGATAAGAGAAGTCCAAAAACCCCTTGAAGATATTACTGATAGTCTCAAGA</genome_strand>
        <mrna_strand>TCTTCATTAATAACAGTTGCATTTTGTCAATTTTTTTCCCTCCAAACCCCAAATGTCCTCTAGAATTGCTTGACTGTGTAAACAAACTAGTTGTAAATTCATCAATGGCAGCATCTGTTTCCTGCCACTATTTTTCTTCCCCATTAACAACTTCCACCAAATCCATCAAGCCTAAGCTCAATTACAGCCATTTCGCACCTGCTCTTAGTAAAGGATCGATCCGCCATTTTGTTCCACTATGTTCTTCACAACGCTCGCTTCCTTCTGAATCGGAATGCCAAGACAAAGAG............................................................................................................................................................................................................................................................................................................................AAAGATTGGTTTTTGTCATTGAAGAAATGTGCAGCTGCAGTAGCATTGTCGGTTAGTTTGATTAGTGGACTACCTGGATCGCAATGGTTGGGTCCTGCTCATGCGAGCACCCCAGCATTGCCAGATGTCTCTGTATTGATCTCAGGGCCACCAATTAAGGATCCAGGGGCGTTATTGAGGTATGCATTGCCTATAGACAACAAGGCGATAAGAGAAGTCCAAAAACCCCTTGAAGATATTACTGATAGTCTCAAGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0236E02-u8qcS/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E335873" ref_strand="+" ref_description="SGN-E335873 [cTOE-6-F6]">
      <seq>ttgcattttgtcaatttttttccctccaaaccccaaatgtcctctagaattgcttgactgtgtaaacaaactagttgtaaattcatcaatggcagcatctgtttcctgccactatttttcttccccattaacaacttccaccaaatccatcaagcctaagctcaattacagccatttcgcacctgctcttagtaaaggatcgatccgccattttgttccactatgttcttcacaacgctcgcttccttctgaatcggaatgccaagacaaagagaaagattggtttttgtcattgaagaaatgtgcagctgcagtagcattgtcggttagtttgattagtggactacctggatcgcaatggttgggtcctgctcatgcgagcaccccagcattgccagatgtctctgtattgatctcagggccaccaattaaggatccaggggcgttattgaggtatgcattgcctatagacaacaaggcgataagagaagtccaaaaaccccttgaagatattactgatagtctc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0236E02-u8qcS/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0236E02.1" temp_strand="-" temp_description="C02HBa0236E02.1  AC215430.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0236E02 sequenced_by:kribb upload_account_name:korea">
        <position start="86008" stop="84567"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="85708" g_stop="85435" g_length="274"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="274" r_length="274" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="85434" i_stop="85119" i_length="316">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.969" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="85118" g_stop="84867" g_length="252"/>
          <reference_exon_boundary r_type="cDNA" r_start="275" r_stop="526" r_length="252" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0236E02.1" gen_strand="-" ref_id="SGN-E335873" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>526</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0236E02.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E335873" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="85708" e_stop="85435"/>
          <exon e_start="85118" e_stop="84867"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTGCATTTTGTCAATTTTTTTCCCTCCAAACCCCAAATGTCCTCTAGAATTGCTTGACTGTGTAAACAAACTAGTTGTAAATTCATCAATGGCAGCATCTGTTTCCTGCCACTATTTTTCTTCCCCATTAACAACTTCCACCAAATCCATCAAGCCTAAGCTCAATTACAGCCATTTCGCACCTGCTCTTAGTAAAGGATCGATCCGCCATTTTGTTCCACTATGTTCTTCACAACGCTCGCTTCCTTCTGAATCGGAATGCCAAGACAAAGAGGCAAGTTCTATTATTCTCCTTCACTTTTTTTTTTATAAAAAAAATAGACGTTCATTAGTTCGAAATGAGTTAATGGAAATTCAAATATCTAAATGAGAAGTTTGAGTGTACAATTGCATCTATTACTTCGTACTTTAGTATAAAAAAATCGACTATATGCATATGTAGTTTAAGCCGAATCCACTGCCTCAGTTATACAATGTTAGCATTTGTAAGTAATGACAAGACTGCAGTTGGTAGTTCTTTCTAAAGTTCTCAAGTGTGTGTTCTTAATAAGTAGGAACTTATATGATGAAGATTTTTCCCAAACCTGCAGAAAGATTGGTTTTTGTCATTGAAGAAATGTGCAGCTGCAGTAGCATTGTCGGTTAGTTTGATTAGTGGACTACCTGGATCGCAATGGTTGGGTCCTGCTCATGCGAGCACCCCAGCATTGCCAGATGTCTCTGTATTGATCTCAGGGCCACCAATTAAGGATCCAGGGGCGTTATTGAGGTATGCATTGCCTATAGACAACAAGGCGATAAGAGAAGTCCAAAAACCCCTTGAAGATATTACTGATAGTCTC</genome_strand>
        <mrna_strand>TTGCATTTTGTCAATTTTTTTCCCTCCAAACCCCAAATGTCCTCTAGAATTGCTTGACTGTGTAAACAAACTAGTTGTAAATTCATCAATGGCAGCATCTGTTTCCTGCCACTATTTTTCTTCCCCATTAACAACTTCCACCAAATCCATCAAGCCTAAGCTCAATTACAGCCATTTCGCACCTGCTCTTAGTAAAGGATCGATCCGCCATTTTGTTCCACTATGTTCTTCACAACGCTCGCTTCCTTCTGAATCGGAATGCCAAGACAAAGAG............................................................................................................................................................................................................................................................................................................................AAAGATTGGTTTTTGTCATTGAAGAAATGTGCAGCTGCAGTAGCATTGTCGGTTAGTTTGATTAGTGGACTACCTGGATCGCAATGGTTGGGTCCTGCTCATGCGAGCACCCCAGCATTGCCAGATGTCTCTGTATTGATCTCAGGGCCACCAATTAAGGATCCAGGGGCGTTATTGAGGTATGCATTGCCTATAGACAACAAGGCGATAAGAGAAGTCCAAAAACCCCTTGAAGATATTACTGATAGTCTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0236E02-u8qcS/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E279300" ref_strand="-" ref_description="SGN-E279300 [cLEL-4-H11](-)">
      <seq>gcacgagaaacaaactagttgtaaattcatcaatggcagcatctgtttcctgccactatttttcttccccattaacaacttccaccaaatccatcaagcctaagctcaattacagccatttcgcacctgctcttagtaaaggatcgatccgccattttgttccactatgttcttcacaacgctcgcttccttctgaatcggaatgccaagacaaagagaaagattggtttttgtcattgaagaaatgtgcagctgcagtagcattgtcggttagtttgattagtggactacctggatcgcaatggttgggtcctgctcatgcgagcaccccagcattgccagatgtctctgtattgatctcagggccaccaattaaggatccaggggcgttattgaggtatgcattgcctatagacaacaaggcgataagagaagtccaaaaaccccttgaagatattac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0236E02-u8qcS/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0236E02.1" temp_strand="-" temp_description="C02HBa0236E02.1  AC215430.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0236E02 sequenced_by:kribb upload_account_name:korea">
        <position start="85952" stop="84577"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="85653" g_stop="85435" g_length="219"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="218" r_length="218" r_score="0.977"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="85434" i_stop="85119" i_length="316">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.969" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="85118" g_stop="84877" g_length="242"/>
          <reference_exon_boundary r_type="cDNA" r_start="219" r_stop="460" r_length="242" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0236E02.1" gen_strand="-" ref_id="SGN-E279300" ref_strand="-">
        <total_alignment_score>0.989</total_alignment_score>
        <cumulative_length_of_scored_exons>461</cumulative_length_of_scored_exons>
        <coverage percentage="1.002" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0236E02.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E279300" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="85653" e_stop="85435"/>
          <exon e_start="85118" e_stop="84877"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GACTGTGTAAACAAACTAGTTGTAAATTCATCAATGGCAGCATCTGTTTCCTGCCACTATTTTTCTTCCCCATTAACAACTTCCACCAAATCCATCAAGCCTAAGCTCAATTACAGCCATTTCGCACCTGCTCTTAGTAAAGGATCGATCCGCCATTTTGTTCCACTATGTTCTTCACAACGCTCGCTTCCTTCTGAATCGGAATGCCAAGACAAAGAGGCAAGTTCTATTATTCTCCTTCACTTTTTTTTTTATAAAAAAAATAGACGTTCATTAGTTCGAAATGAGTTAATGGAAATTCAAATATCTAAATGAGAAGTTTGAGTGTACAATTGCATCTATTACTTCGTACTTTAGTATAAAAAAATCGACTATATGCATATGTAGTTTAAGCCGAATCCACTGCCTCAGTTATACAATGTTAGCATTTGTAAGTAATGACAAGACTGCAGTTGGTAGTTCTTTCTAAAGTTCTCAAGTGTGTGTTCTTAATAAGTAGGAACTTATATGATGAAGATTTTTCCCAAACCTGCAGAAAGATTGGTTTTTGTCATTGAAGAAATGTGCAGCTGCAGTAGCATTGTCGGTTAGTTTGATTAGTGGACTACCTGGATCGCAATGGTTGGGTCCTGCTCATGCGAGCACCCCAGCATTGCCAGATGTCTCTGTATTGATCTCAGGGCCACCAATTAAGGATCCAGGGGCGTTATTGAGGTATGCATTGCCTATAGACAACAAGGCGATAAGAGAAGTCCAAAAACCCCTTGAAGATATTAC</genome_strand>
        <mrna_strand>GCACGAG-AAACAAACTAGTTGTAAATTCATCAATGGCAGCATCTGTTTCCTGCCACTATTTTTCTTCCCCATTAACAACTTCCACCAAATCCATCAAGCCTAAGCTCAATTACAGCCATTTCGCACCTGCTCTTAGTAAAGGATCGATCCGCCATTTTGTTCCACTATGTTCTTCACAACGCTCGCTTCCTTCTGAATCGGAATGCCAAGACAAAGAG............................................................................................................................................................................................................................................................................................................................AAAGATTGGTTTTTGTCATTGAAGAAATGTGCAGCTGCAGTAGCATTGTCGGTTAGTTTGATTAGTGGACTACCTGGATCGCAATGGTTGGGTCCTGCTCATGCGAGCACCCCAGCATTGCCAGATGTCTCTGTATTGATCTCAGGGCCACCAATTAAGGATCCAGGGGCGTTATTGAGGTATGCATTGCCTATAGACAACAAGGCGATAAGAGAAGTCCAAAAACCCCTTGAAGATATTAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0236E02-u8qcS/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E725405" ref_strand="+" ref_description="SGN-E725405 [LA03AA07]">
      <seq>ggctgcaggaattcgcacgaggtgactgtgtaaacaaactagttgtaaattcatcaatggcagcatctgtttcctgccactatttttcttccccattaacaacttccaccaaatccatcaagcctaagctcaattacagccatttcgcacctgctcttagtaaaggatcgatccgccattttgttccactatgttcttcacaacgctcgcttccttctgaatcggaatgccaagacaaagagaaagattggtttttgtcattgaagaaatgtgcagctgcagtagcattgtcggttagtttgattagtggactacctggatcgcaatggttgggtcctgctcatgcgagcaccccagcattgccagatgtctctgtattgatctcagggccaccaattaaggatccaggggcgttattgaggtatgcattgcctatagacaacaagg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0236E02-u8qcS/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0236E02.1" temp_strand="-" temp_description="C02HBa0236E02.1  AC215430.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0236E02 sequenced_by:kribb upload_account_name:korea">
        <position start="85954" stop="84614"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="85654" g_stop="85435" g_length="220"/>
          <reference_exon_boundary r_type="cDNA" r_start="23" r_stop="242" r_length="220" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="85434" i_stop="85119" i_length="316">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.969" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="85118" g_stop="84914" g_length="205"/>
          <reference_exon_boundary r_type="cDNA" r_start="243" r_stop="447" r_length="205" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0236E02.1" gen_strand="-" ref_id="SGN-E725405" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>425</cumulative_length_of_scored_exons>
        <coverage percentage="0.951" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0236E02.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E725405" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="85654" e_stop="85435"/>
          <exon e_start="85118" e_stop="84914"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGACTGTGTAAACAAACTAGTTGTAAATTCATCAATGGCAGCATCTGTTTCCTGCCACTATTTTTCTTCCCCATTAACAACTTCCACCAAATCCATCAAGCCTAAGCTCAATTACAGCCATTTCGCACCTGCTCTTAGTAAAGGATCGATCCGCCATTTTGTTCCACTATGTTCTTCACAACGCTCGCTTCCTTCTGAATCGGAATGCCAAGACAAAGAGGCAAGTTCTATTATTCTCCTTCACTTTTTTTTTTATAAAAAAAATAGACGTTCATTAGTTCGAAATGAGTTAATGGAAATTCAAATATCTAAATGAGAAGTTTGAGTGTACAATTGCATCTATTACTTCGTACTTTAGTATAAAAAAATCGACTATATGCATATGTAGTTTAAGCCGAATCCACTGCCTCAGTTATACAATGTTAGCATTTGTAAGTAATGACAAGACTGCAGTTGGTAGTTCTTTCTAAAGTTCTCAAGTGTGTGTTCTTAATAAGTAGGAACTTATATGATGAAGATTTTTCCCAAACCTGCAGAAAGATTGGTTTTTGTCATTGAAGAAATGTGCAGCTGCAGTAGCATTGTCGGTTAGTTTGATTAGTGGACTACCTGGATCGCAATGGTTGGGTCCTGCTCATGCGAGCACCCCAGCATTGCCAGATGTCTCTGTATTGATCTCAGGGCCACCAATTAAGGATCCAGGGGCGTTATTGAGGTATGCATTGCCTATAGACAACAAGG</genome_strand>
        <mrna_strand>TGACTGTGTAAACAAACTAGTTGTAAATTCATCAATGGCAGCATCTGTTTCCTGCCACTATTTTTCTTCCCCATTAACAACTTCCACCAAATCCATCAAGCCTAAGCTCAATTACAGCCATTTCGCACCTGCTCTTAGTAAAGGATCGATCCGCCATTTTGTTCCACTATGTTCTTCACAACGCTCGCTTCCTTCTGAATCGGAATGCCAAGACAAAGAG............................................................................................................................................................................................................................................................................................................................AAAGATTGGTTTTTGTCATTGAAGAAATGTGCAGCTGCAGTAGCATTGTCGGTTAGTTTGATTAGTGGACTACCTGGATCGCAATGGTTGGGTCCTGCTCATGCGAGCACCCCAGCATTGCCAGATGTCTCTGTATTGATCTCAGGGCCACCAATTAAGGATCCAGGGGCGTTATTGAGGTATGCATTGCCTATAGACAACAAGG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0236E02-u8qcS/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E318321" ref_strand="+" ref_description="SGN-E318321 [cTOA-29-C9]">
      <seq>tctggtattccaattttatccttatctctttctactctcctcctgtccattacacctattttcaatctcaatttcttcattaataacagttgcattttgtcaatttttttccctccaaaccccaaatgtcctctagaattgcttgactgtgtaaacaaactagttgtaaattcatcaatggcagcatctgtttcctgccactatttttcttccccattaacaacttccaccaaatccatcaagcctaagctcaattacagccatttcgcacctgctcttagtaaaggatcgatccgccattttgttccactatgttcttcacaacgctcgcttccttctgaatcggaatgccaagacaaagagaaagattggtttttgtcattgaagaaatgtgcagctgcagtagcattgtcggttagtttgattagtggactacctggatcgcaatggttgggtcctgctcatgcgagcaccccagcattgccagatgtctctgtattgatctcagggccaccaattaaggatccaggggcgttattgaggtatgcattgcctat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0236E02-u8qcS/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0236E02.1" temp_strand="-" temp_description="C02HBa0236E02.1  AC215430.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0236E02 sequenced_by:kribb upload_account_name:korea">
        <position start="86097" stop="84625"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="85797" g_stop="85435" g_length="363"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="363" r_length="363" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="85434" i_stop="85119" i_length="316">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.969" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="85118" g_stop="84925" g_length="194"/>
          <reference_exon_boundary r_type="cDNA" r_start="364" r_stop="557" r_length="194" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0236E02.1" gen_strand="-" ref_id="SGN-E318321" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>557</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0236E02.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E318321" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="85797" e_stop="85435"/>
          <exon e_start="85118" e_stop="84925"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCTGGTATTCCAATTTTATCCTTATCTCTTTCTACTCTCCTCCTGTCCATTACACCTATTTTCAATCTCAATTTCTTCATTAATAACAGTTGCATTTTGTCAATTTTTTTCCCTCCAAACCCCAAATGTCCTCTAGAATTGCTTGACTGTGTAAACAAACTAGTTGTAAATTCATCAATGGCAGCATCTGTTTCCTGCCACTATTTTTCTTCCCCATTAACAACTTCCACCAAATCCATCAAGCCTAAGCTCAATTACAGCCATTTCGCACCTGCTCTTAGTAAAGGATCGATCCGCCATTTTGTTCCACTATGTTCTTCACAACGCTCGCTTCCTTCTGAATCGGAATGCCAAGACAAAGAGGCAAGTTCTATTATTCTCCTTCACTTTTTTTTTTATAAAAAAAATAGACGTTCATTAGTTCGAAATGAGTTAATGGAAATTCAAATATCTAAATGAGAAGTTTGAGTGTACAATTGCATCTATTACTTCGTACTTTAGTATAAAAAAATCGACTATATGCATATGTAGTTTAAGCCGAATCCACTGCCTCAGTTATACAATGTTAGCATTTGTAAGTAATGACAAGACTGCAGTTGGTAGTTCTTTCTAAAGTTCTCAAGTGTGTGTTCTTAATAAGTAGGAACTTATATGATGAAGATTTTTCCCAAACCTGCAGAAAGATTGGTTTTTGTCATTGAAGAAATGTGCAGCTGCAGTAGCATTGTCGGTTAGTTTGATTAGTGGACTACCTGGATCGCAATGGTTGGGTCCTGCTCATGCGAGCACCCCAGCATTGCCAGATGTCTCTGTATTGATCTCAGGGCCACCAATTAAGGATCCAGGGGCGTTATTGAGGTATGCATTGCCTAT</genome_strand>
        <mrna_strand>TCTGGTATTCCAATTTTATCCTTATCTCTTTCTACTCTCCTCCTGTCCATTACACCTATTTTCAATCTCAATTTCTTCATTAATAACAGTTGCATTTTGTCAATTTTTTTCCCTCCAAACCCCAAATGTCCTCTAGAATTGCTTGACTGTGTAAACAAACTAGTTGTAAATTCATCAATGGCAGCATCTGTTTCCTGCCACTATTTTTCTTCCCCATTAACAACTTCCACCAAATCCATCAAGCCTAAGCTCAATTACAGCCATTTCGCACCTGCTCTTAGTAAAGGATCGATCCGCCATTTTGTTCCACTATGTTCTTCACAACGCTCGCTTCCTTCTGAATCGGAATGCCAAGACAAAGAG............................................................................................................................................................................................................................................................................................................................AAAGATTGGTTTTTGTCATTGAAGAAATGTGCAGCTGCAGTAGCATTGTCGGTTAGTTTGATTAGTGGACTACCTGGATCGCAATGGTTGGGTCCTGCTCATGCGAGCACCCCAGCATTGCCAGATGTCTCTGTATTGATCTCAGGGCCACCAATTAAGGATCCAGGGGCGTTATTGAGGTATGCATTGCCTAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0236E02-u8qcS/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E412941" ref_strand="+" ref_description="SGN-E412941 [STM-17-G3]">
      <seq>gttgacctgagtctctggtattccaattttatccttatctctttccactctcctcctgtccattacacctaattttcaatctcaatttctccattaataccacttacattttgtcaaagatatttttttctccaaacctaaatgtcctctacatttgcttaactgtgtaaacaaattagttgtaaattcatcaatggcagcatctgtttcctgccactatttttcttccccattaacaacttctaacaaatccatcaagcccaagctcaattacagccattttgcacctgctctaagtaaaggatcgattcgccattttgttccactatgttctttacaacactcgcttccttctgaatctgaatgccaagacaaagagaaagattggtttttgtcattaaagaaatgtgcagctgcagttgcattgtcagttagtttgataactggactacctggatcgcaatggttgagtcctgctcatgcgagcaccccagcattgccagatgtctctgtattgatctcagggccaccaattaangatccaggggcgttattgaggtatgcatt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0236E02-u8qcS/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0236E02.1" temp_strand="-" temp_description="C02HBa0236E02.1  AC215430.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0236E02 sequenced_by:kribb upload_account_name:korea">
        <position start="86110" stop="84631"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="85810" g_stop="85435" g_length="376"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="379" r_length="379" r_score="0.918"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="85434" i_stop="85119" i_length="316">
            <donor d_prob="1.000" d_score="0.94"/>
            <acceptor a_prob="0.969" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="85118" g_stop="84931" g_length="188"/>
          <reference_exon_boundary r_type="cDNA" r_start="380" r_stop="567" r_length="188" r_score="0.963"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0236E02.1" gen_strand="-" ref_id="SGN-E412941" ref_strand="+">
        <total_alignment_score>0.933</total_alignment_score>
        <cumulative_length_of_scored_exons>564</cumulative_length_of_scored_exons>
        <coverage percentage="0.995" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0236E02.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E412941" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="85810" e_stop="85435"/>
          <exon e_start="85118" e_stop="84931"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTTGACCTGAGTCTCTGGTATTCCAATTTTATCCTTATCTCTTTCTACTCTCCTCCTGTCCATTACACCT-ATTTTCAATCTCAATTTCTTCATTAATAACAGTTGCATTTTGTC--A-ATTTTTTTCCCTCCAAACCCCAAATGTCCTCTAGAATTGCTTGACTGTGTAAACAAACTAGTTGTAAATTCATCAATGGCAGCATCTGTTTCCTGCCACTATTTTTCTTCCCCATTAACAACTTCCACCAAATCCATCAAGCCTAAGCTCAATTACAGCCATTTCGCACCTGCTCTTAGTAAAGGATCGATCCGCCATTTTGTTCCACTATGTTCTTCACAACGCTCGCTTCCTTCTGAATCGGAATGCCAAGACAAAGAGGCAAGTTCTATTATTCTCCTTCACTTTTTTTTTTATAAAAAAAATAGACGTTCATTAGTTCGAAATGAGTTAATGGAAATTCAAATATCTAAATGAGAAGTTTGAGTGTACAATTGCATCTATTACTTCGTACTTTAGTATAAAAAAATCGACTATATGCATATGTAGTTTAAGCCGAATCCACTGCCTCAGTTATACAATGTTAGCATTTGTAAGTAATGACAAGACTGCAGTTGGTAGTTCTTTCTAAAGTTCTCAAGTGTGTGTTCTTAATAAGTAGGAACTTATATGATGAAGATTTTTCCCAAACCTGCAGAAAGATTGGTTTTTGTCATTGAAGAAATGTGCAGCTGCAGTAGCATTGTCGGTTAGTTTGATTAGTGGACTACCTGGATCGCAATGGTTGGGTCCTGCTCATGCGAGCACCCCAGCATTGCCAGATGTCTCTGTATTGATCTCAGGGCCACCAATTAAGGATCCAGGGGCGTTATTGAGGTATGCATT</genome_strand>
        <mrna_strand>GTTGACCTGAGTCTCTGGTATTCCAATTTTATCCTTATCTCTTTCCACTCTCCTCCTGTCCATTACACCTAATTTTCAATCTCAATTTCTCCATTAATACCACTTACATTTTGTCAAAGATATTTTTTTCTCCAAA-CCTAAATGTCCTCTACATTTGCTTAACTGTGTAAACAAATTAGTTGTAAATTCATCAATGGCAGCATCTGTTTCCTGCCACTATTTTTCTTCCCCATTAACAACTTCTAACAAATCCATCAAGCCCAAGCTCAATTACAGCCATTTTGCACCTGCTCTAAGTAAAGGATCGATTCGCCATTTTGTTCCACTATGTTCTTTACAACACTCGCTTCCTTCTGAATCTGAATGCCAAGACAAAGAG............................................................................................................................................................................................................................................................................................................................AAAGATTGGTTTTTGTCATTAAAGAAATGTGCAGCTGCAGTTGCATTGTCAGTTAGTTTGATAACTGGACTACCTGGATCGCAATGGTTGAGTCCTGCTCATGCGAGCACCCCAGCATTGCCAGATGTCTCTGTATTGATCTCAGGGCCACCAATTAANGATCCAGGGGCGTTATTGAGGTATGCATT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0236E02-u8qcS/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E472747" ref_strand="+" ref_description="SGN-E472747 [cSTB-29-D14]">
      <seq>cctcgtgccgcttaactgtgtaaacaaactagttgtaaattcatcaatggcagcatctgtttcctgccactatttttcttccccattaacaacttctaccaaatccatcaagcctaacctcaattaccgccattttgcacctactcttagtaaaggatcgatccgccatctagctccactatgttcttgacaacgttcgcctccttctgaatctgaatgcacagacaaagagaaagattggttgttttcattgaagaaatgtgcagctgcaggtgcattgacaggtagtttgataactggactacctggatcgcaatggttgagtcctgctcatgcgagcacc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0236E02-u8qcS/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0236E02.1" temp_strand="-" temp_description="C02HBa0236E02.1  AC215430.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0236E02 sequenced_by:kribb upload_account_name:korea">
        <position start="85957" stop="84708"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="85666" g_stop="85435" g_length="232"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="232" r_length="232" r_score="0.909"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="85434" i_stop="85119" i_length="316">
            <donor d_prob="1.000" d_score="0.88"/>
            <acceptor a_prob="0.969" a_score="0.90"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="85118" g_stop="85008" g_length="111"/>
          <reference_exon_boundary r_type="cDNA" r_start="233" r_stop="343" r_length="111" r_score="0.910"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0236E02.1" gen_strand="-" ref_id="SGN-E472747" ref_strand="+">
        <total_alignment_score>0.910</total_alignment_score>
        <cumulative_length_of_scored_exons>343</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0236E02.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E472747" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="85666" e_stop="85435"/>
          <exon e_start="85118" e_stop="85008"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCTAGAATTGCTTGACTGTGTAAACAAACTAGTTGTAAATTCATCAATGGCAGCATCTGTTTCCTGCCACTATTTTTCTTCCCCATTAACAACTTCCACCAAATCCATCAAGCCTAAGCTCAATTACAGCCATTTCGCACCTGCTCTTAGTAAAGGATCGATCCGCCATTTTGTTCCACTATGTTCTTCACAACGCTCGCTTCCTTCTGAATCGGAATGCCAAGACAAAGAGGCAAGTTCTATTATTCTCCTTCACTTTTTTTTTTATAAAAAAAATAGACGTTCATTAGTTCGAAATGAGTTAATGGAAATTCAAATATCTAAATGAGAAGTTTGAGTGTACAATTGCATCTATTACTTCGTACTTTAGTATAAAAAAATCGACTATATGCATATGTAGTTTAAGCCGAATCCACTGCCTCAGTTATACAATGTTAGCATTTGTAAGTAATGACAAGACTGCAGTTGGTAGTTCTTTCTAAAGTTCTCAAGTGTGTGTTCTTAATAAGTAGGAACTTATATGATGAAGATTTTTCCCAAACCTGCAGAAAGATTGGTTTTTGTCATTGAAGAAATGTGCAGCTGCAGTAGCATTGTCGGTTAGTTTGATTAGTGGACTACCTGGATCGCAATGGTTGGGTCCTGCTCATGCGAGCACC</genome_strand>
        <mrna_strand>CCTCGTGCCGCTTAACTGTGTAAACAAACTAGTTGTAAATTCATCAATGGCAGCATCTGTTTCCTGCCACTATTTTTCTTCCCCATTAACAACTTCTACCAAATCCATCAAGCCTAACCTCAATTACCGCCATTTTGCACCTACTCTTAGTAAAGGATCGATCCGCCATCTAGCTCCACTATGTTCTTGACAACGTTCGCCTCCTTCTGAATCTGAATGCACAGACAAAGAG............................................................................................................................................................................................................................................................................................................................AAAGATTGGTTGTTTTCATTGAAGAAATGTGCAGCTGCAGGTGCATTGACAGGTAGTTTGATAACTGGACTACCTGGATCGCAATGGTTGAGTCCTGCTCATGCGAGCACC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0236E02-u8qcS/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E471424" ref_strand="+" ref_description="SGN-E471424 [cSTB-24-A9]">
      <seq>gttgacctgagtctctggtattccaattttatccttatctctttccactctcctcctgtccattacacctaattttcaatctcaatttctccattaataccacttacattttgtcaaagatatttttttctccaaacctaaatgtcctctacatttgcttaactgtgtaaacaaattagttgtaaattcatcaatggcagcatctgtttcctgccactatttttcttccccattaacaacttctaacaaatccatcaagcccaagctcaattacagccattttgcacctgctctaagtaaaggatcgattcgccattttgttccactatgttctttacaacactcgcttccttctgaatctgaatgccaagacaaagagaaagattggtttttgtcattaaagaaatgtgcagctgcagttgcattgtcagttagtttgataac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0236E02-u8qcS/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0236E02.1" temp_strand="-" temp_description="C02HBa0236E02.1  AC215430.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0236E02 sequenced_by:kribb upload_account_name:korea">
        <position start="86110" stop="84755"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="85810" g_stop="85435" g_length="376"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="379" r_length="379" r_score="0.918"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="85434" i_stop="85119" i_length="316">
            <donor d_prob="1.000" d_score="0.94"/>
            <acceptor a_prob="0.969" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="85118" g_stop="85054" g_length="65"/>
          <reference_exon_boundary r_type="cDNA" r_start="380" r_stop="444" r_length="65" r_score="0.923"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0236E02.1" gen_strand="-" ref_id="SGN-E471424" ref_strand="+">
        <total_alignment_score>0.918</total_alignment_score>
        <cumulative_length_of_scored_exons>441</cumulative_length_of_scored_exons>
        <coverage percentage="0.993" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0236E02.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E471424" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="85810" e_stop="85435"/>
          <exon e_start="85118" e_stop="85054"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTTGACCTGAGTCTCTGGTATTCCAATTTTATCCTTATCTCTTTCTACTCTCCTCCTGTCCATTACACCT-ATTTTCAATCTCAATTTCTTCATTAATAACAGTTGCATTTTGTC--A-ATTTTTTTCCCTCCAAACCCCAAATGTCCTCTAGAATTGCTTGACTGTGTAAACAAACTAGTTGTAAATTCATCAATGGCAGCATCTGTTTCCTGCCACTATTTTTCTTCCCCATTAACAACTTCCACCAAATCCATCAAGCCTAAGCTCAATTACAGCCATTTCGCACCTGCTCTTAGTAAAGGATCGATCCGCCATTTTGTTCCACTATGTTCTTCACAACGCTCGCTTCCTTCTGAATCGGAATGCCAAGACAAAGAGGCAAGTTCTATTATTCTCCTTCACTTTTTTTTTTATAAAAAAAATAGACGTTCATTAGTTCGAAATGAGTTAATGGAAATTCAAATATCTAAATGAGAAGTTTGAGTGTACAATTGCATCTATTACTTCGTACTTTAGTATAAAAAAATCGACTATATGCATATGTAGTTTAAGCCGAATCCACTGCCTCAGTTATACAATGTTAGCATTTGTAAGTAATGACAAGACTGCAGTTGGTAGTTCTTTCTAAAGTTCTCAAGTGTGTGTTCTTAATAAGTAGGAACTTATATGATGAAGATTTTTCCCAAACCTGCAGAAAGATTGGTTTTTGTCATTGAAGAAATGTGCAGCTGCAGTAGCATTGTCGGTTAGTTTGATTAG</genome_strand>
        <mrna_strand>GTTGACCTGAGTCTCTGGTATTCCAATTTTATCCTTATCTCTTTCCACTCTCCTCCTGTCCATTACACCTAATTTTCAATCTCAATTTCTCCATTAATACCACTTACATTTTGTCAAAGATATTTTTTTCTCCAAA-CCTAAATGTCCTCTACATTTGCTTAACTGTGTAAACAAATTAGTTGTAAATTCATCAATGGCAGCATCTGTTTCCTGCCACTATTTTTCTTCCCCATTAACAACTTCTAACAAATCCATCAAGCCCAAGCTCAATTACAGCCATTTTGCACCTGCTCTAAGTAAAGGATCGATTCGCCATTTTGTTCCACTATGTTCTTTACAACACTCGCTTCCTTCTGAATCTGAATGCCAAGACAAAGAG............................................................................................................................................................................................................................................................................................................................AAAGATTGGTTTTTGTCATTAAAGAAATGTGCAGCTGCAGTTGCATTGTCAGTTAGTTTGATAAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0236E02-u8qcS/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E745450" ref_strand="+" ref_description="SGN-E745450 [GI|47105628]">
      <seq>gagtcgcaaaataaacttacaaaacagcacatatatatagagacaaaatcacataatacgccctcgccggaatcttattttcactgtcgccggccgttaaaactttttttttctagttcggaggtcaaataattaacctccgatcggaagaagtagttattctaactgcttctatttaatctgaaaacgggaaaacccctgagctggttaaggtggatttcgtgatgggattttgtatttgtcctttggaaactcctgctagattactgtggagtactagtttcttccgccacaagcttatgctcttctaaaacttagtcaactctcttttttcatacacatccctgctaaaaaagaagaactctgtgctggagtttttgttttcctttttctgtttcgccggaaacatataaataatcttctgtgtgtaaataggcgattttccagatagttgaaaatatgggatctgggcatatatttttcgacccgtcgtcgtgtcacggcaacatgctgttccttgggagcggagatcctgttttccgaggaccaagatcgacgatgatgaagatggaggactcctcgaagaggcgacccttctttagctcgccggaggatctatatgacgaggaatactacgacgagcagtcaccggagaagaagcgccgtctcactcctgagcaggtgcacttgttggagaagagctttgagacagaaaacaagctggagcccgagcgcaaaacccagctggcctaaaagctggggctgcagcccagacaggtggctgtatggttccaaaaccgccgtgcccggtggaagaccaagcagctcgagagggattatgatcagctcaaatcctcttatgactcccttctctctgattttgactccgttcgcaaagataacgataagctcaaatctgaggttgtttcattgatggaaaagttacaggggaaagtggttggaggagcagggggaaatgaaaaatctgacatcttggaggtggatgctatgacgatccttcaagtgaaggtgaaggctggggaccggttgagcagtggcagtggtgggagcgcggtggtagatgagcatagttcacagctggtggacagtggggactcatattttcacactgatcatgaggagtatccagggcctggaggatgcaatgttcctccacccatggatggtttacaatcggaggaagatgatggtagtgatgatcatggcagttgccatggctacttctctaacgtctttgtggcagaagagcagcaccatgaacaaggagaagagcctattggatggttctggtcttaattgaattttagaatattatattacagtttttcttatctacgcgcgctttgtatgatgaaataagtgtcgtaattccaacttcttatttaaacatctattaatatgcttttgcagcttttattctcttgatttagcaaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0236E02-u8qcS/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0236E02.1" temp_strand="+" temp_description="C02HBa0236E02.1  AC215430.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0236E02 sequenced_by:kribb upload_account_name:korea">
        <position start="101313" stop="105490"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="101612" g_stop="102155" g_length="544"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="544" r_length="544" r_score="0.998"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="102156" i_stop="102705" i_length="550">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="102706" g_stop="102842" g_length="137"/>
          <reference_exon_boundary r_type="cDNA" r_start="545" r_stop="681" r_length="137" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="102843" i_stop="103290" i_length="448">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.784" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="103291" g_stop="103530" g_length="240"/>
          <reference_exon_boundary r_type="cDNA" r_start="682" r_stop="921" r_length="240" r_score="0.996"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="103531" i_stop="104660" i_length="1130">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="104661" g_stop="105189" g_length="529"/>
          <reference_exon_boundary r_type="cDNA" r_start="922" r_stop="1450" r_length="529" r_score="0.996"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="1453" polyA_stop="1472"/>
      <MATCH_line gen_id="C02HBa0236E02.1" gen_strand="+" ref_id="SGN-E745450" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>1450</cumulative_length_of_scored_exons>
        <coverage percentage="0.985" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0236E02.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E745450" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="101612" e_stop="102155"/>
          <exon e_start="102706" e_stop="102842"/>
          <exon e_start="103291" e_stop="103530"/>
          <exon e_start="104661" e_stop="105189"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TAGTCGCAAAATAAACTTACAAAACAGCACATATATATAGAGACAAAATCACATAATACGCCCTCGCCGGAATCTTATTTTCACTGTCGCCGGCCGTTAAAACTTTTTTTTTCTAGTTCGGAGGTCAAATAATTAACCTCCGATCGGAAGAAGTAGTTATTCTAACTGCTTCTATTTAATCTGAAAACGGGAAAACCCCTGAGCTGGTTAAGGTGGATTTCGTGATGGGATTTTGTATTTGTCCTTTGGAAACTCCTGCTAGATTACTGTGGAGTACTAGTTTCTTCCGCCACAAGCTTATGCTCTTCTAAAACTTAGTCAACTCTCTTTTTTCATACACATCCCTGCTAAAAAAGAAGAACTCTGTGCTGGAGTTTTTGTTTTCCTTTTTCTGTTTCGCCGGAAACATATAAATAATCTTCTGTGTGTAAATAGGCGATTTTCCAGATAGTTGAAAATATGGGATCTGGGCATATATTTTTCGACCCGTCGTCGTGTCACGGCAACATGCTGTTCCTTGGGAGCGGAGATCCTGTTTTCCGAGGTATTCTCTAATCATTATGTTCTCTATTCCAATTACTTATATTACTATGAAAATATAATTTAAGAACTTTTTTGATGACTCAATTCCACTATTAAAATTGAAAGTAAAGTATGTATATGATATGAGTAACACTATCACTAGAAAGTGAAATTCGTCTTGATCTGATTTAATTTTTTTGAATGATGTAAATTTTATTATTCAAATTTACAACCAAAACAAGTATAGAAATATTTTGTCCAAGTTAATTTATTCTGAATCGTACAAGATGAAACGAAGCGGTTAACTTGTAGGGTAACCTGCGATAGATGATTTATAATTTCAGTGTACGAAGAGGTTAAGATATACGTAGATCCTTCGTACATATTTTTATAAGTTGTTTCAGATAGATAGTTTTAAATTCAATTCACTTAGGGTATTGTTTTTATAGATTGATTATCTCTAGTACAGTAAAAATAATGATAAAATTGTAACAACCTTTTTGCATGTAAGTTCTAAGGGTGGCCTTTTATACTATTCTATTTTGAAGCTTGACTTATATTGATTGATACAGGACCAAGATCGACGATGATGAAGATGGAGGACTCCTCGAAGAGGCGACCCTTCTTTAGCTCGCCGGAGGATCTATATGACGAGGAATACTACGACGAGCAGTCACCGGAGAAGAAGCGCCGTCTCACTCCTGAGCAGGTTAGCATCCTGTTCCTCCTTTATCTACCCAAAAATATAAATTAAGTAAATGCGTTTTTTTAATAGTTCGATGGAGTAGTTATCAATTCAACATACTGTGACATATATCTCCTAGCTATCAAGATAGTTAAATTTTTTGGTTCAAATCTCACCATCACATATTTTTGGCAATTGGCCACTACATGTGAAACGATTTGTTTAGTCAAATTATAATTAAGTAACTAAAGAAGATTCCCTCTAAAGTGATTTAAGTTTTTAATTATATTGGAACATATTCACCACTATAGCATCAAATTCTTCACAATATCTACCTTTAAACCCTGAAAAGAAGAGAATTTCTTTTTTATCAACGAGCGTTTTCTTTAAGCAAAATTTTATAATTTTGTGGGATTCGATTACTTGCTGAGCAATAAGTGCATGTCCTGCGTTGTTGGGTACGTAAATGAAGGTGCACTTGTTGGAGAAGAGCTTTGAGACAGAAAACAAGCTGGAGCCCGAGCGCAAAACCCAGCTGGCCAAAAAGCTGGGGCTGCAGCCCAGACAGGTGGCTGTATGGTTCCAAAACCGCCGTGCCCGGTGGAAGACCAAGCAGCTCGAGAGGGATTATGATCAGCTCAAATCCTCTTATGACTCCCTTCTCTCTGATTTTGACTCCGTTCGCAAAGATAACGATAAGCTCAAATCTGAGGTATAACCATATAGTAATAGTGTTGTGATCATTTTATTTGCTTAGATTCTATTATACTTTGTACCAACCTCTTAACATCGATTTTTCTGGTCGATTTTTGGCATATCTATTAATACTATGTCCTTAAGGCCTTAGCTTTTGCAATACTCTATGAGAAAGAATTAACAAATCTTGGATAACACACCTGTCTTGCAACGATTTGATCAATGACAAAAAGCCGCCTTTCTTGTAACACTGGGGAGTCGGATATATATGTAGAATAATATGATGCCTTACTGAATAAAAACTAGCTAGGAGAGAGTCTATGATAATTTTTTTGTAGTATATAGTAGAATATTAAGATATGTTTGTTGACGAAATTTGTCGGCGAAGTTGGTAATTGGTAGAAATTTTAATCTGACTTTTAATTTGAGGTCATATTCTGTGTAACACCTGGCCATCAATATTAGTAGTGGGGAACCTCACAAACAATATTCTTCCTCACCTAGAATAGAAAATTATATCTGTCAATGTCCTTCTGAGTCATCTTGCATCAGAGTCAAATAAATAAAGTAGCATCTGTTCTAACCCCCCCACTTTCAATGTTTTTTTCTATTACTTGGATTTCAATTTCAAAAAAAGCGAATATACTTTTGATATATTGGGAAAACTTGCTTTAAAATATGCGTAGTGATGAAGACCTTACTATATAGATAGTGGATGTATCACTATCAGAGTTACGCTACTGTTATTTCTTAGTAAACTTTTACTAATTTATTCTTTTGCTTTTATTTTGCACCTTCGTTTTTTTAAAAGTGATGTAATAATAGGGTTATCAACAGCATATTTTTTTTTTTTACAATATTACGCTAAGTTGACTTATAACAATTGGCAACTCTTCATAATACGTCAAAGAGTTGGTATACATTGTAAGACTTGCGCATTTACGTCACACATCAAATCAAATTTTATATATAAGTTTATCACAACTTATTGTATAGTAGGTACACCTGACTTGGCTTGTATTCGAGGTTGCTAATCCCACTAAATGTGATTTTATCTTTTTAGCTTACATGATAGCGTGCAAGTAATTAAGTTGTTGTATATAGTAATAGATTTGAAACTATTTTGTTAATTGGGGAAAAATGCAGGTTGTTTCATTGATGGAAAAGTTACAGGGGAAAGTGGTTGGAGGAGCAGGGGGAAATGAAAAATCTGACATCTTGGAGGTGGATGCTATGACGATCCTTCAAGTGAAGGTGAAGGCTGAGGACCGGTTGAGCAGTGGCAGTGGTGGGAGCGCGGTGGTAGATGAGCATAGTCCACAGCTGGTGGACAGTGGGGACTCATATTTTCACACTGATCATGAGGAGTATCCAGGGCCTGGAGGATGCAATGTTCCTCCACCCATGGATGGTTTACAATCGGAGGAAGATGATGGTAGTGATGATCATGGCAGTTGCCATGGCTACTTCTCTAACGTCTTTGTGGCAGAAGAGCAGCACCATGAACAAGGAGAAGAGCCTATTGGATGGTTCTGGTCTTAATTGAATTTTAGAATATTATATTACAGTTTTTCTTATCTACGCGCGCTTTGTATGATGAAATAAGTGTCGTAATTCCAACTTCTTATTTAAACATCTATTAATATGCTTTTGCAGCTTTTATTCTCTTGATTTA</genome_strand>
        <mrna_strand>GAGTCGCAAAATAAACTTACAAAACAGCACATATATATAGAGACAAAATCACATAATACGCCCTCGCCGGAATCTTATTTTCACTGTCGCCGGCCGTTAAAACTTTTTTTTTCTAGTTCGGAGGTCAAATAATTAACCTCCGATCGGAAGAAGTAGTTATTCTAACTGCTTCTATTTAATCTGAAAACGGGAAAACCCCTGAGCTGGTTAAGGTGGATTTCGTGATGGGATTTTGTATTTGTCCTTTGGAAACTCCTGCTAGATTACTGTGGAGTACTAGTTTCTTCCGCCACAAGCTTATGCTCTTCTAAAACTTAGTCAACTCTCTTTTTTCATACACATCCCTGCTAAAAAAGAAGAACTCTGTGCTGGAGTTTTTGTTTTCCTTTTTCTGTTTCGCCGGAAACATATAAATAATCTTCTGTGTGTAAATAGGCGATTTTCCAGATAGTTGAAAATATGGGATCTGGGCATATATTTTTCGACCCGTCGTCGTGTCACGGCAACATGCTGTTCCTTGGGAGCGGAGATCCTGTTTTCCGAG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GACCAAGATCGACGATGATGAAGATGGAGGACTCCTCGAAGAGGCGACCCTTCTTTAGCTCGCCGGAGGATCTATATGACGAGGAATACTACGACGAGCAGTCACCGGAGAAGAAGCGCCGTCTCACTCCTGAGCAG................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGCACTTGTTGGAGAAGAGCTTTGAGACAGAAAACAAGCTGGAGCCCGAGCGCAAAACCCAGCTGGCCTAAAAGCTGGGGCTGCAGCCCAGACAGGTGGCTGTATGGTTCCAAAACCGCCGTGCCCGGTGGAAGACCAAGCAGCTCGAGAGGGATTATGATCAGCTCAAATCCTCTTATGACTCCCTTCTCTCTGATTTTGACTCCGTTCGCAAAGATAACGATAAGCTCAAATCTGAG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTGTTTCATTGATGGAAAAGTTACAGGGGAAAGTGGTTGGAGGAGCAGGGGGAAATGAAAAATCTGACATCTTGGAGGTGGATGCTATGACGATCCTTCAAGTGAAGGTGAAGGCTGGGGACCGGTTGAGCAGTGGCAGTGGTGGGAGCGCGGTGGTAGATGAGCATAGTTCACAGCTGGTGGACAGTGGGGACTCATATTTTCACACTGATCATGAGGAGTATCCAGGGCCTGGAGGATGCAATGTTCCTCCACCCATGGATGGTTTACAATCGGAGGAAGATGATGGTAGTGATGATCATGGCAGTTGCCATGGCTACTTCTCTAACGTCTTTGTGGCAGAAGAGCAGCACCATGAACAAGGAGAAGAGCCTATTGGATGGTTCTGGTCTTAATTGAATTTTAGAATATTATATTACAGTTTTTCTTATCTACGCGCGCTTTGTATGATGAAATAAGTGTCGTAATTCCAACTTCTTATTTAAACATCTATTAATATGCTTTTGCAGCTTTTATTCTCTTGATTTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0236E02-u8qcS/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E706629" ref_strand="+" ref_description="SGN-E706629 [FA30CA03]">
      <seq>tacaaaacagcacatatatatagagacaaaatcacataatacgccctcgccggaatcttattttcactgtcgccggccgttaaaactttttttttctagttcggaggtcaaataattaacctccgatcggaagaagtagttattctaactgcttctatttaatctgaaaacgggaaaacccctgagctggttaaggtggatttcgtgatgggattttgtatttgtcctttggaaactcctgctagattactgtggagtactagtttcttccgccacaagcttatgctcttctaaaacttagtcaactctcttttttcatacacatccctgctaaaaaagaagaactctgtgctggagtttttgttttcctttttctgtttcgccggaaacatataaataatcttctgtgtgtaaataggcgattttccagatagttgaaaatatgggatctgggcatatatttttcgacccgtcgtcgtgtcacggcaacatgctgttccttgggagcggagatcctgttttccgaggaccaagatcgacgatgatgaagatggaggactcctcgaagaggcgacccttctttagctcgccggaggatctatatgacgaggaatactacgacgagcagtcaccggagaagaagcgccgtctcactcctgagcaggttgtttcattgatggaaaagttacaggggaaagtggttggaggagcagggggaaatgaaaaatctgacatcttggaggtggatgctatgacgatccttcaagtgaaggtgaaggctgaggaccggttgagcagtggcagtggtgggagcgcggtggtaaatgagcatagtccacagctggtggacagtggggactcatattttcacactgatcatg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0236E02-u8qcS/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0236E02.1" temp_strand="+" temp_description="C02HBa0236E02.1  AC215430.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0236E02 sequenced_by:kribb upload_account_name:korea">
        <position start="101329" stop="105177"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="101629" g_stop="102155" g_length="527"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="527" r_length="527" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="102156" i_stop="102705" i_length="550">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="102706" g_stop="102842" g_length="137"/>
          <reference_exon_boundary r_type="cDNA" r_start="528" r_stop="664" r_length="137" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="102843" i_stop="104660" i_length="1818">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="104661" g_stop="104877" g_length="217"/>
          <reference_exon_boundary r_type="cDNA" r_start="665" r_stop="881" r_length="217" r_score="0.995"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0236E02.1" gen_strand="+" ref_id="SGN-E706629" ref_strand="+">
        <total_alignment_score>0.999</total_alignment_score>
        <cumulative_length_of_scored_exons>881</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0236E02.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E706629" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="101629" e_stop="102155"/>
          <exon e_start="102706" e_stop="102842"/>
          <exon e_start="104661" e_stop="104877"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TACAAAACAGCACATATATATAGAGACAAAATCACATAATACGCCCTCGCCGGAATCTTATTTTCACTGTCGCCGGCCGTTAAAACTTTTTTTTTCTAGTTCGGAGGTCAAATAATTAACCTCCGATCGGAAGAAGTAGTTATTCTAACTGCTTCTATTTAATCTGAAAACGGGAAAACCCCTGAGCTGGTTAAGGTGGATTTCGTGATGGGATTTTGTATTTGTCCTTTGGAAACTCCTGCTAGATTACTGTGGAGTACTAGTTTCTTCCGCCACAAGCTTATGCTCTTCTAAAACTTAGTCAACTCTCTTTTTTCATACACATCCCTGCTAAAAAAGAAGAACTCTGTGCTGGAGTTTTTGTTTTCCTTTTTCTGTTTCGCCGGAAACATATAAATAATCTTCTGTGTGTAAATAGGCGATTTTCCAGATAGTTGAAAATATGGGATCTGGGCATATATTTTTCGACCCGTCGTCGTGTCACGGCAACATGCTGTTCCTTGGGAGCGGAGATCCTGTTTTCCGAGGTATTCTCTAATCATTATGTTCTCTATTCCAATTACTTATATTACTATGAAAATATAATTTAAGAACTTTTTTGATGACTCAATTCCACTATTAAAATTGAAAGTAAAGTATGTATATGATATGAGTAACACTATCACTAGAAAGTGAAATTCGTCTTGATCTGATTTAATTTTTTTGAATGATGTAAATTTTATTATTCAAATTTACAACCAAAACAAGTATAGAAATATTTTGTCCAAGTTAATTTATTCTGAATCGTACAAGATGAAACGAAGCGGTTAACTTGTAGGGTAACCTGCGATAGATGATTTATAATTTCAGTGTACGAAGAGGTTAAGATATACGTAGATCCTTCGTACATATTTTTATAAGTTGTTTCAGATAGATAGTTTTAAATTCAATTCACTTAGGGTATTGTTTTTATAGATTGATTATCTCTAGTACAGTAAAAATAATGATAAAATTGTAACAACCTTTTTGCATGTAAGTTCTAAGGGTGGCCTTTTATACTATTCTATTTTGAAGCTTGACTTATATTGATTGATACAGGACCAAGATCGACGATGATGAAGATGGAGGACTCCTCGAAGAGGCGACCCTTCTTTAGCTCGCCGGAGGATCTATATGACGAGGAATACTACGACGAGCAGTCACCGGAGAAGAAGCGCCGTCTCACTCCTGAGCAGGTTAGCATCCTGTTCCTCCTTTATCTACCCAAAAATATAAATTAAGTAAATGCGTTTTTTTAATAGTTCGATGGAGTAGTTATCAATTCAACATACTGTGACATATATCTCCTAGCTATCAAGATAGTTAAATTTTTTGGTTCAAATCTCACCATCACATATTTTTGGCAATTGGCCACTACATGTGAAACGATTTGTTTAGTCAAATTATAATTAAGTAACTAAAGAAGATTCCCTCTAAAGTGATTTAAGTTTTTAATTATATTGGAACATATTCACCACTATAGCATCAAATTCTTCACAATATCTACCTTTAAACCCTGAAAAGAAGAGAATTTCTTTTTTATCAACGAGCGTTTTCTTTAAGCAAAATTTTATAATTTTGTGGGATTCGATTACTTGCTGAGCAATAAGTGCATGTCCTGCGTTGTTGGGTACGTAAATGAAGGTGCACTTGTTGGAGAAGAGCTTTGAGACAGAAAACAAGCTGGAGCCCGAGCGCAAAACCCAGCTGGCCAAAAAGCTGGGGCTGCAGCCCAGACAGGTGGCTGTATGGTTCCAAAACCGCCGTGCCCGGTGGAAGACCAAGCAGCTCGAGAGGGATTATGATCAGCTCAAATCCTCTTATGACTCCCTTCTCTCTGATTTTGACTCCGTTCGCAAAGATAACGATAAGCTCAAATCTGAGGTATAACCATATAGTAATAGTGTTGTGATCATTTTATTTGCTTAGATTCTATTATACTTTGTACCAACCTCTTAACATCGATTTTTCTGGTCGATTTTTGGCATATCTATTAATACTATGTCCTTAAGGCCTTAGCTTTTGCAATACTCTATGAGAAAGAATTAACAAATCTTGGATAACACACCTGTCTTGCAACGATTTGATCAATGACAAAAAGCCGCCTTTCTTGTAACACTGGGGAGTCGGATATATATGTAGAATAATATGATGCCTTACTGAATAAAAACTAGCTAGGAGAGAGTCTATGATAATTTTTTTGTAGTATATAGTAGAATATTAAGATATGTTTGTTGACGAAATTTGTCGGCGAAGTTGGTAATTGGTAGAAATTTTAATCTGACTTTTAATTTGAGGTCATATTCTGTGTAACACCTGGCCATCAATATTAGTAGTGGGGAACCTCACAAACAATATTCTTCCTCACCTAGAATAGAAAATTATATCTGTCAATGTCCTTCTGAGTCATCTTGCATCAGAGTCAAATAAATAAAGTAGCATCTGTTCTAACCCCCCCACTTTCAATGTTTTTTTCTATTACTTGGATTTCAATTTCAAAAAAAGCGAATATACTTTTGATATATTGGGAAAACTTGCTTTAAAATATGCGTAGTGATGAAGACCTTACTATATAGATAGTGGATGTATCACTATCAGAGTTACGCTACTGTTATTTCTTAGTAAACTTTTACTAATTTATTCTTTTGCTTTTATTTTGCACCTTCGTTTTTTTAAAAGTGATGTAATAATAGGGTTATCAACAGCATATTTTTTTTTTTTACAATATTACGCTAAGTTGACTTATAACAATTGGCAACTCTTCATAATACGTCAAAGAGTTGGTATACATTGTAAGACTTGCGCATTTACGTCACACATCAAATCAAATTTTATATATAAGTTTATCACAACTTATTGTATAGTAGGTACACCTGACTTGGCTTGTATTCGAGGTTGCTAATCCCACTAAATGTGATTTTATCTTTTTAGCTTACATGATAGCGTGCAAGTAATTAAGTTGTTGTATATAGTAATAGATTTGAAACTATTTTGTTAATTGGGGAAAAATGCAGGTTGTTTCATTGATGGAAAAGTTACAGGGGAAAGTGGTTGGAGGAGCAGGGGGAAATGAAAAATCTGACATCTTGGAGGTGGATGCTATGACGATCCTTCAAGTGAAGGTGAAGGCTGAGGACCGGTTGAGCAGTGGCAGTGGTGGGAGCGCGGTGGTAGATGAGCATAGTCCACAGCTGGTGGACAGTGGGGACTCATATTTTCACACTGATCATG</genome_strand>
        <mrna_strand>TACAAAACAGCACATATATATAGAGACAAAATCACATAATACGCCCTCGCCGGAATCTTATTTTCACTGTCGCCGGCCGTTAAAACTTTTTTTTTCTAGTTCGGAGGTCAAATAATTAACCTCCGATCGGAAGAAGTAGTTATTCTAACTGCTTCTATTTAATCTGAAAACGGGAAAACCCCTGAGCTGGTTAAGGTGGATTTCGTGATGGGATTTTGTATTTGTCCTTTGGAAACTCCTGCTAGATTACTGTGGAGTACTAGTTTCTTCCGCCACAAGCTTATGCTCTTCTAAAACTTAGTCAACTCTCTTTTTTCATACACATCCCTGCTAAAAAAGAAGAACTCTGTGCTGGAGTTTTTGTTTTCCTTTTTCTGTTTCGCCGGAAACATATAAATAATCTTCTGTGTGTAAATAGGCGATTTTCCAGATAGTTGAAAATATGGGATCTGGGCATATATTTTTCGACCCGTCGTCGTGTCACGGCAACATGCTGTTCCTTGGGAGCGGAGATCCTGTTTTCCGAG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GACCAAGATCGACGATGATGAAGATGGAGGACTCCTCGAAGAGGCGACCCTTCTTTAGCTCGCCGGAGGATCTATATGACGAGGAATACTACGACGAGCAGTCACCGGAGAAGAAGCGCCGTCTCACTCCTGAGCAG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTGTTTCATTGATGGAAAAGTTACAGGGGAAAGTGGTTGGAGGAGCAGGGGGAAATGAAAAATCTGACATCTTGGAGGTGGATGCTATGACGATCCTTCAAGTGAAGGTGAAGGCTGAGGACCGGTTGAGCAGTGGCAGTGGTGGGAGCGCGGTGGTAAATGAGCATAGTCCACAGCTGGTGGACAGTGGGGACTCATATTTTCACACTGATCATG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0236E02-u8qcS/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E703216" ref_strand="+" ref_description="SGN-E703216 [FA20DE10]">
      <seq>acaaaacagcacatatatatagagacaaaatcacataatacgccctcgccggaatcttattttcactgtcgccggccgttaaaactttttttttctagttcggaggtcaaataattaacctccgatcggaagaagtagttattctaactgcttctatttaatctgaaaacgggaaaacccctgagctggttaaggtggatttcgtgatgggattttgtatttgtcctttggaaactcctgctagattactgtggagtactagtttcttccgccacaagcttatgctcttctaaaacttagtcaactctcttttttcatacacatccctgctaaaaaagaagaactctgtgctggagtttttgttttcctttttctgtttcgccggaaacatataaataatcttctgtgtgtaaataggcgattttccagatagttgaaaatatgggatctgggcatatatttttcgacccgtcgtcgtgtcacggcaacatgctgttccttgggagcggagatcctgttttccgaggaccaagatcgacgatgatgaagatggaggactcctcgaagaggcgacccttctttagctcgccggaggatctatatgacgaggaatactacgacgagcagtcaccggagaagaagcgccgtctcactcctgagcaggtgcacttgttggagaagagctttgagacagaaaacaagctggagcccgagcgcaaaacccagctggccaaaaagctggggctgcagcccagacaggtggctgtatggttccaaaaccgccgtgcccggtggaagaccaagcagctcgagagggattatgatcagcctcaatcctcttatgactcccctctctctgattttgactccgt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0236E02-u8qcS/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0236E02.1" temp_strand="+" temp_description="C02HBa0236E02.1  AC215430.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0236E02 sequenced_by:kribb upload_account_name:korea">
        <position start="101330" stop="103799"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="101630" g_stop="102155" g_length="526"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="526" r_length="526" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="102156" i_stop="102705" i_length="550">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="102706" g_stop="102842" g_length="137"/>
          <reference_exon_boundary r_type="cDNA" r_start="527" r_stop="663" r_length="137" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="102843" i_stop="103290" i_length="448">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.784" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="103291" g_stop="103499" g_length="209"/>
          <reference_exon_boundary r_type="cDNA" r_start="664" r_stop="872" r_length="209" r_score="0.981"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0236E02.1" gen_strand="+" ref_id="SGN-E703216" ref_strand="+">
        <total_alignment_score>0.995</total_alignment_score>
        <cumulative_length_of_scored_exons>872</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0236E02.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E703216" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="101630" e_stop="102155"/>
          <exon e_start="102706" e_stop="102842"/>
          <exon e_start="103291" e_stop="103499"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACAAAACAGCACATATATATAGAGACAAAATCACATAATACGCCCTCGCCGGAATCTTATTTTCACTGTCGCCGGCCGTTAAAACTTTTTTTTTCTAGTTCGGAGGTCAAATAATTAACCTCCGATCGGAAGAAGTAGTTATTCTAACTGCTTCTATTTAATCTGAAAACGGGAAAACCCCTGAGCTGGTTAAGGTGGATTTCGTGATGGGATTTTGTATTTGTCCTTTGGAAACTCCTGCTAGATTACTGTGGAGTACTAGTTTCTTCCGCCACAAGCTTATGCTCTTCTAAAACTTAGTCAACTCTCTTTTTTCATACACATCCCTGCTAAAAAAGAAGAACTCTGTGCTGGAGTTTTTGTTTTCCTTTTTCTGTTTCGCCGGAAACATATAAATAATCTTCTGTGTGTAAATAGGCGATTTTCCAGATAGTTGAAAATATGGGATCTGGGCATATATTTTTCGACCCGTCGTCGTGTCACGGCAACATGCTGTTCCTTGGGAGCGGAGATCCTGTTTTCCGAGGTATTCTCTAATCATTATGTTCTCTATTCCAATTACTTATATTACTATGAAAATATAATTTAAGAACTTTTTTGATGACTCAATTCCACTATTAAAATTGAAAGTAAAGTATGTATATGATATGAGTAACACTATCACTAGAAAGTGAAATTCGTCTTGATCTGATTTAATTTTTTTGAATGATGTAAATTTTATTATTCAAATTTACAACCAAAACAAGTATAGAAATATTTTGTCCAAGTTAATTTATTCTGAATCGTACAAGATGAAACGAAGCGGTTAACTTGTAGGGTAACCTGCGATAGATGATTTATAATTTCAGTGTACGAAGAGGTTAAGATATACGTAGATCCTTCGTACATATTTTTATAAGTTGTTTCAGATAGATAGTTTTAAATTCAATTCACTTAGGGTATTGTTTTTATAGATTGATTATCTCTAGTACAGTAAAAATAATGATAAAATTGTAACAACCTTTTTGCATGTAAGTTCTAAGGGTGGCCTTTTATACTATTCTATTTTGAAGCTTGACTTATATTGATTGATACAGGACCAAGATCGACGATGATGAAGATGGAGGACTCCTCGAAGAGGCGACCCTTCTTTAGCTCGCCGGAGGATCTATATGACGAGGAATACTACGACGAGCAGTCACCGGAGAAGAAGCGCCGTCTCACTCCTGAGCAGGTTAGCATCCTGTTCCTCCTTTATCTACCCAAAAATATAAATTAAGTAAATGCGTTTTTTTAATAGTTCGATGGAGTAGTTATCAATTCAACATACTGTGACATATATCTCCTAGCTATCAAGATAGTTAAATTTTTTGGTTCAAATCTCACCATCACATATTTTTGGCAATTGGCCACTACATGTGAAACGATTTGTTTAGTCAAATTATAATTAAGTAACTAAAGAAGATTCCCTCTAAAGTGATTTAAGTTTTTAATTATATTGGAACATATTCACCACTATAGCATCAAATTCTTCACAATATCTACCTTTAAACCCTGAAAAGAAGAGAATTTCTTTTTTATCAACGAGCGTTTTCTTTAAGCAAAATTTTATAATTTTGTGGGATTCGATTACTTGCTGAGCAATAAGTGCATGTCCTGCGTTGTTGGGTACGTAAATGAAGGTGCACTTGTTGGAGAAGAGCTTTGAGACAGAAAACAAGCTGGAGCCCGAGCGCAAAACCCAGCTGGCCAAAAAGCTGGGGCTGCAGCCCAGACAGGTGGCTGTATGGTTCCAAAACCGCCGTGCCCGGTGGAAGACCAAGCAGCTCGAGAGGGATTATGATCAGCTCAAATCCTCTTATGACTCCCTTCTCTCTGATTTTGACTCCGT</genome_strand>
        <mrna_strand>ACAAAACAGCACATATATATAGAGACAAAATCACATAATACGCCCTCGCCGGAATCTTATTTTCACTGTCGCCGGCCGTTAAAACTTTTTTTTTCTAGTTCGGAGGTCAAATAATTAACCTCCGATCGGAAGAAGTAGTTATTCTAACTGCTTCTATTTAATCTGAAAACGGGAAAACCCCTGAGCTGGTTAAGGTGGATTTCGTGATGGGATTTTGTATTTGTCCTTTGGAAACTCCTGCTAGATTACTGTGGAGTACTAGTTTCTTCCGCCACAAGCTTATGCTCTTCTAAAACTTAGTCAACTCTCTTTTTTCATACACATCCCTGCTAAAAAAGAAGAACTCTGTGCTGGAGTTTTTGTTTTCCTTTTTCTGTTTCGCCGGAAACATATAAATAATCTTCTGTGTGTAAATAGGCGATTTTCCAGATAGTTGAAAATATGGGATCTGGGCATATATTTTTCGACCCGTCGTCGTGTCACGGCAACATGCTGTTCCTTGGGAGCGGAGATCCTGTTTTCCGAG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GACCAAGATCGACGATGATGAAGATGGAGGACTCCTCGAAGAGGCGACCCTTCTTTAGCTCGCCGGAGGATCTATATGACGAGGAATACTACGACGAGCAGTCACCGGAGAAGAAGCGCCGTCTCACTCCTGAGCAG................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGCACTTGTTGGAGAAGAGCTTTGAGACAGAAAACAAGCTGGAGCCCGAGCGCAAAACCCAGCTGGCCAAAAAGCTGGGGCTGCAGCCCAGACAGGTGGCTGTATGGTTCCAAAACCGCCGTGCCCGGTGGAAGACCAAGCAGCTCGAGAGGGATTATGATCAGCCTCAATCCTCTTATGACTCCCCTCTCTCTGATTTTGACTCCGT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0236E02-u8qcS/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E700601" ref_strand="+" ref_description="SGN-E700601 [FA13CD06]">
      <seq>accaaacagcacatatatatagagacaaaatcacataatacgccctcgccggaatcttattttcactgtcgccggccgttaaaactttttttttctagttcggaggtcaaataattaacctccgatcggaagaagtagttattctaactgcttctatttaatctgaaaacgggaaaacccctgagctggttaaggtggatttcgtgatgggattttgtatttgtcctttggaaactcctgctagattactgtggagtactagtttcttccgccacaagcttatgctcttctaaaacttagtcaactctcttttttcatacacatccctgctaaaaaagaagaactctgtgctggagtttttgttttcctttttctgtttcgccggaaacatataaataatcttctgtgtgtaaataggcgattttccagatagttgaaaatatgggatctgggcatatatttttcgacccgtcgtcgtgtcacggcaacatgctgttccttgggagcggagatcctgttttccgaggaccaagatcgacgatgatgaagatggaggactcctcgaagaggcgacccttctttagctcgccggaggatctatatgacgaggaatactacgacgagcagtcaccggagaagaagcgccgtctcactcctgagcaggtgcacttgttggagaagagctttgagacagaaaacaagctggagcccgagcgcaaaacccagctggccaaaaagctggggctgcagcccagacaggtggctgtatggttcaaaaccgccgtgcccggtggaagacaagcagctcgagagggatatgatcagctcaaatcctcttatgactcccttctctctgattt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0236E02-u8qcS/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0236E02.1" temp_strand="+" temp_description="C02HBa0236E02.1  AC215430.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0236E02 sequenced_by:kribb upload_account_name:korea">
        <position start="101330" stop="103790"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="101630" g_stop="102155" g_length="526"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="526" r_length="526" r_score="0.998"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="102156" i_stop="102705" i_length="550">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="102706" g_stop="102842" g_length="137"/>
          <reference_exon_boundary r_type="cDNA" r_start="527" r_stop="663" r_length="137" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="102843" i_stop="103290" i_length="448">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.784" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="103291" g_stop="103490" g_length="200"/>
          <reference_exon_boundary r_type="cDNA" r_start="664" r_stop="860" r_length="197" r_score="0.985"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0236E02.1" gen_strand="+" ref_id="SGN-E700601" ref_strand="+">
        <total_alignment_score>0.995</total_alignment_score>
        <cumulative_length_of_scored_exons>863</cumulative_length_of_scored_exons>
        <coverage percentage="1.003" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0236E02.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E700601" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="101630" e_stop="102155"/>
          <exon e_start="102706" e_stop="102842"/>
          <exon e_start="103291" e_stop="103490"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACAAAACAGCACATATATATAGAGACAAAATCACATAATACGCCCTCGCCGGAATCTTATTTTCACTGTCGCCGGCCGTTAAAACTTTTTTTTTCTAGTTCGGAGGTCAAATAATTAACCTCCGATCGGAAGAAGTAGTTATTCTAACTGCTTCTATTTAATCTGAAAACGGGAAAACCCCTGAGCTGGTTAAGGTGGATTTCGTGATGGGATTTTGTATTTGTCCTTTGGAAACTCCTGCTAGATTACTGTGGAGTACTAGTTTCTTCCGCCACAAGCTTATGCTCTTCTAAAACTTAGTCAACTCTCTTTTTTCATACACATCCCTGCTAAAAAAGAAGAACTCTGTGCTGGAGTTTTTGTTTTCCTTTTTCTGTTTCGCCGGAAACATATAAATAATCTTCTGTGTGTAAATAGGCGATTTTCCAGATAGTTGAAAATATGGGATCTGGGCATATATTTTTCGACCCGTCGTCGTGTCACGGCAACATGCTGTTCCTTGGGAGCGGAGATCCTGTTTTCCGAGGTATTCTCTAATCATTATGTTCTCTATTCCAATTACTTATATTACTATGAAAATATAATTTAAGAACTTTTTTGATGACTCAATTCCACTATTAAAATTGAAAGTAAAGTATGTATATGATATGAGTAACACTATCACTAGAAAGTGAAATTCGTCTTGATCTGATTTAATTTTTTTGAATGATGTAAATTTTATTATTCAAATTTACAACCAAAACAAGTATAGAAATATTTTGTCCAAGTTAATTTATTCTGAATCGTACAAGATGAAACGAAGCGGTTAACTTGTAGGGTAACCTGCGATAGATGATTTATAATTTCAGTGTACGAAGAGGTTAAGATATACGTAGATCCTTCGTACATATTTTTATAAGTTGTTTCAGATAGATAGTTTTAAATTCAATTCACTTAGGGTATTGTTTTTATAGATTGATTATCTCTAGTACAGTAAAAATAATGATAAAATTGTAACAACCTTTTTGCATGTAAGTTCTAAGGGTGGCCTTTTATACTATTCTATTTTGAAGCTTGACTTATATTGATTGATACAGGACCAAGATCGACGATGATGAAGATGGAGGACTCCTCGAAGAGGCGACCCTTCTTTAGCTCGCCGGAGGATCTATATGACGAGGAATACTACGACGAGCAGTCACCGGAGAAGAAGCGCCGTCTCACTCCTGAGCAGGTTAGCATCCTGTTCCTCCTTTATCTACCCAAAAATATAAATTAAGTAAATGCGTTTTTTTAATAGTTCGATGGAGTAGTTATCAATTCAACATACTGTGACATATATCTCCTAGCTATCAAGATAGTTAAATTTTTTGGTTCAAATCTCACCATCACATATTTTTGGCAATTGGCCACTACATGTGAAACGATTTGTTTAGTCAAATTATAATTAAGTAACTAAAGAAGATTCCCTCTAAAGTGATTTAAGTTTTTAATTATATTGGAACATATTCACCACTATAGCATCAAATTCTTCACAATATCTACCTTTAAACCCTGAAAAGAAGAGAATTTCTTTTTTATCAACGAGCGTTTTCTTTAAGCAAAATTTTATAATTTTGTGGGATTCGATTACTTGCTGAGCAATAAGTGCATGTCCTGCGTTGTTGGGTACGTAAATGAAGGTGCACTTGTTGGAGAAGAGCTTTGAGACAGAAAACAAGCTGGAGCCCGAGCGCAAAACCCAGCTGGCCAAAAAGCTGGGGCTGCAGCCCAGACAGGTGGCTGTATGGTTCCAAAACCGCCGTGCCCGGTGGAAGACCAAGCAGCTCGAGAGGGATTATGATCAGCTCAAATCCTCTTATGACTCCCTTCTCTCTGATTT</genome_strand>
        <mrna_strand>ACCAAACAGCACATATATATAGAGACAAAATCACATAATACGCCCTCGCCGGAATCTTATTTTCACTGTCGCCGGCCGTTAAAACTTTTTTTTTCTAGTTCGGAGGTCAAATAATTAACCTCCGATCGGAAGAAGTAGTTATTCTAACTGCTTCTATTTAATCTGAAAACGGGAAAACCCCTGAGCTGGTTAAGGTGGATTTCGTGATGGGATTTTGTATTTGTCCTTTGGAAACTCCTGCTAGATTACTGTGGAGTACTAGTTTCTTCCGCCACAAGCTTATGCTCTTCTAAAACTTAGTCAACTCTCTTTTTTCATACACATCCCTGCTAAAAAAGAAGAACTCTGTGCTGGAGTTTTTGTTTTCCTTTTTCTGTTTCGCCGGAAACATATAAATAATCTTCTGTGTGTAAATAGGCGATTTTCCAGATAGTTGAAAATATGGGATCTGGGCATATATTTTTCGACCCGTCGTCGTGTCACGGCAACATGCTGTTCCTTGGGAGCGGAGATCCTGTTTTCCGAG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GACCAAGATCGACGATGATGAAGATGGAGGACTCCTCGAAGAGGCGACCCTTCTTTAGCTCGCCGGAGGATCTATATGACGAGGAATACTACGACGAGCAGTCACCGGAGAAGAAGCGCCGTCTCACTCCTGAGCAG................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGCACTTGTTGGAGAAGAGCTTTGAGACAGAAAACAAGCTGGAGCCCGAGCGCAAAACCCAGCTGGCCAAAAAGCTGGGGCTGCAGCCCAGACAGGTGGCTGTATGGTT-CAAAACCGCCGTGCCCGGTGGAAGA-CAAGCAGCTCGAGAGGGA-TATGATCAGCTCAAATCCTCTTATGACTCCCTTCTCTCTGATTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0236E02-u8qcS/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E321961" ref_strand="+" ref_description="SGN-E321961 [cTOB-29-K2]">
      <seq>acaaaacagcacatatatatagagacaaaatcacataatacgccctcgccggaatcttattttcactgtcgccggccgttaaaactttttttttctagttcggaggtcaaataattaacctccgatcggaagaagtagttattctaactgcttctatttaatctgaaaacgggaaaacccctgagctggttaaggtggatttcgtgatgggattttgtatttgtcctttggaaactcctgctagattactgtggagtactagtttcttccgccacaagcttatgctcttctaaaacttagtcaactctcttttttcatacacatccctgctaaaaaagaagaactctgtgctggagtttttgttttcctttttctgtttcgccggaaacatataaataatcttctgtgtgtaaataggcgattttccagatagttgaaaatatgggatctgggcatatatttttcgacccgtcgtcgtgtcacggcaacatgctgttccttgggagcggagatcctgttttccgaggaccaagatcgacgatgatgaagatggaggactcctcgaagaggcgacccttctttagctcgccggaggatctatatgacgaggaatactacgacgagcagtcaccggagaaagagcgccgtctcactcctgagcaggtgcac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0236E02-u8qcS/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0236E02.1" temp_strand="+" temp_description="C02HBa0236E02.1  AC215430.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0236E02 sequenced_by:kribb upload_account_name:korea">
        <position start="101330" stop="103144"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="101630" g_stop="102155" g_length="526"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="526" r_length="526" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="102156" i_stop="102705" i_length="550">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="102706" g_stop="102838" g_length="133"/>
          <reference_exon_boundary r_type="cDNA" r_start="527" r_stop="659" r_length="133" r_score="0.985"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0236E02.1" gen_strand="+" ref_id="SGN-E321961" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>659</cumulative_length_of_scored_exons>
        <coverage percentage="0.985" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0236E02.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E321961" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="101630" e_stop="102155"/>
          <exon e_start="102706" e_stop="102838"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACAAAACAGCACATATATATAGAGACAAAATCACATAATACGCCCTCGCCGGAATCTTATTTTCACTGTCGCCGGCCGTTAAAACTTTTTTTTTCTAGTTCGGAGGTCAAATAATTAACCTCCGATCGGAAGAAGTAGTTATTCTAACTGCTTCTATTTAATCTGAAAACGGGAAAACCCCTGAGCTGGTTAAGGTGGATTTCGTGATGGGATTTTGTATTTGTCCTTTGGAAACTCCTGCTAGATTACTGTGGAGTACTAGTTTCTTCCGCCACAAGCTTATGCTCTTCTAAAACTTAGTCAACTCTCTTTTTTCATACACATCCCTGCTAAAAAAGAAGAACTCTGTGCTGGAGTTTTTGTTTTCCTTTTTCTGTTTCGCCGGAAACATATAAATAATCTTCTGTGTGTAAATAGGCGATTTTCCAGATAGTTGAAAATATGGGATCTGGGCATATATTTTTCGACCCGTCGTCGTGTCACGGCAACATGCTGTTCCTTGGGAGCGGAGATCCTGTTTTCCGAGGTATTCTCTAATCATTATGTTCTCTATTCCAATTACTTATATTACTATGAAAATATAATTTAAGAACTTTTTTGATGACTCAATTCCACTATTAAAATTGAAAGTAAAGTATGTATATGATATGAGTAACACTATCACTAGAAAGTGAAATTCGTCTTGATCTGATTTAATTTTTTTGAATGATGTAAATTTTATTATTCAAATTTACAACCAAAACAAGTATAGAAATATTTTGTCCAAGTTAATTTATTCTGAATCGTACAAGATGAAACGAAGCGGTTAACTTGTAGGGTAACCTGCGATAGATGATTTATAATTTCAGTGTACGAAGAGGTTAAGATATACGTAGATCCTTCGTACATATTTTTATAAGTTGTTTCAGATAGATAGTTTTAAATTCAATTCACTTAGGGTATTGTTTTTATAGATTGATTATCTCTAGTACAGTAAAAATAATGATAAAATTGTAACAACCTTTTTGCATGTAAGTTCTAAGGGTGGCCTTTTATACTATTCTATTTTGAAGCTTGACTTATATTGATTGATACAGGACCAAGATCGACGATGATGAAGATGGAGGACTCCTCGAAGAGGCGACCCTTCTTTAGCTCGCCGGAGGATCTATATGACGAGGAATACTACGACGAGCAGTCACCGGAGAAGAAGCGCCGTCTCACTCCTGA</genome_strand>
        <mrna_strand>ACAAAACAGCACATATATATAGAGACAAAATCACATAATACGCCCTCGCCGGAATCTTATTTTCACTGTCGCCGGCCGTTAAAACTTTTTTTTTCTAGTTCGGAGGTCAAATAATTAACCTCCGATCGGAAGAAGTAGTTATTCTAACTGCTTCTATTTAATCTGAAAACGGGAAAACCCCTGAGCTGGTTAAGGTGGATTTCGTGATGGGATTTTGTATTTGTCCTTTGGAAACTCCTGCTAGATTACTGTGGAGTACTAGTTTCTTCCGCCACAAGCTTATGCTCTTCTAAAACTTAGTCAACTCTCTTTTTTCATACACATCCCTGCTAAAAAAGAAGAACTCTGTGCTGGAGTTTTTGTTTTCCTTTTTCTGTTTCGCCGGAAACATATAAATAATCTTCTGTGTGTAAATAGGCGATTTTCCAGATAGTTGAAAATATGGGATCTGGGCATATATTTTTCGACCCGTCGTCGTGTCACGGCAACATGCTGTTCCTTGGGAGCGGAGATCCTGTTTTCCGAG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GACCAAGATCGACGATGATGAAGATGGAGGACTCCTCGAAGAGGCGACCCTTCTTTAGCTCGCCGGAGGATCTATATGACGAGGAATACTACGACGAGCAGTCACCGGAGAAAGAGCGCCGTCTCACTCCTGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0236E02-u8qcS/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E318784" ref_strand="+" ref_description="SGN-E318784 [cTOB-11-B23]">
      <seq>acaaaacatcacatatatatagagacagggtcacataatacgccctcgccggaatcttattttcactgtcgccggccgttaaaactttttttttctagttcggaggtcaaataattaacctccgatcggaagaagtagttattctaactgcttctatttaatctgaaaacgggaaaacccctgagctggttaaggtggatttcgtgatgggattttgtatttgtcctttggaaactcctgctagattactgtggagtactagtttcttccgccacaagcttatgctcttctaaaacttagtcaactctcttttttcatacacatccctgctaaaaaagaagaactctgtgctggagtttttgttttcctttttctgtttcgccggaaacatataaataatcttgtgtgtgtaaataggcgattttccagattgttgaaaatatgggatctgggcatatatttttcgac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0236E02-u8qcS/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0236E02.1" temp_strand="+" temp_description="C02HBa0236E02.1  AC215430.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0236E02 sequenced_by:kribb upload_account_name:korea">
        <position start="101330" stop="102397"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="101630" g_stop="102097" g_length="468"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="468" r_length="468" r_score="0.987"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0236E02.1" gen_strand="+" ref_id="SGN-E318784" ref_strand="+">
        <total_alignment_score>0.987</total_alignment_score>
        <cumulative_length_of_scored_exons>468</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0236E02.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E318784" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="101630" e_stop="102097"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACAAAACAGCACATATATATAGAGACAAAATCACATAATACGCCCTCGCCGGAATCTTATTTTCACTGTCGCCGGCCGTTAAAACTTTTTTTTTCTAGTTCGGAGGTCAAATAATTAACCTCCGATCGGAAGAAGTAGTTATTCTAACTGCTTCTATTTAATCTGAAAACGGGAAAACCCCTGAGCTGGTTAAGGTGGATTTCGTGATGGGATTTTGTATTTGTCCTTTGGAAACTCCTGCTAGATTACTGTGGAGTACTAGTTTCTTCCGCCACAAGCTTATGCTCTTCTAAAACTTAGTCAACTCTCTTTTTTCATACACATCCCTGCTAAAAAAGAAGAACTCTGTGCTGGAGTTTTTGTTTTCCTTTTTCTGTTTCGCCGGAAACATATAAATAATCTTCTGTGTGTAAATAGGCGATTTTCCAGATAGTTGAAAATATGGGATCTGGGCATATATTTTTCGAC</genome_strand>
        <mrna_strand>ACAAAACATCACATATATATAGAGACAGGGTCACATAATACGCCCTCGCCGGAATCTTATTTTCACTGTCGCCGGCCGTTAAAACTTTTTTTTTCTAGTTCGGAGGTCAAATAATTAACCTCCGATCGGAAGAAGTAGTTATTCTAACTGCTTCTATTTAATCTGAAAACGGGAAAACCCCTGAGCTGGTTAAGGTGGATTTCGTGATGGGATTTTGTATTTGTCCTTTGGAAACTCCTGCTAGATTACTGTGGAGTACTAGTTTCTTCCGCCACAAGCTTATGCTCTTCTAAAACTTAGTCAACTCTCTTTTTTCATACACATCCCTGCTAAAAAAGAAGAACTCTGTGCTGGAGTTTTTGTTTTCCTTTTTCTGTTTCGCCGGAAACATATAAATAATCTTGTGTGTGTAAATAGGCGATTTTCCAGATTGTTGAAAATATGGGATCTGGGCATATATTTTTCGAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0236E02-u8qcS/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E333531" ref_strand="+" ref_description="SGN-E333531 [cTOD-22-C19]">
      <seq>caaaacagcacatatatatagagacaaaatcacataatacgccctcgccggaatcttattttcactgtcgccggccgttaaaactttttttttctagttcggaggtcaaataattaacctccgatcggaagaagtagttattctaactgcttctatttaatctgaaaacgggaaaacccctgagctggttaaggtggatttcgtgatgggattttgtatttgtcctttggaaactcctgctagattactgtggagtactagtttcttccgccacaagcttatgctcttctaaaacttagtcaactctcttttttcatacacatccctgctaaaaaagaagaactctgtgctggagtttttgttttcctttttctgtttcgccggaaacatataaataatcttctgtgtgtaaataggcgattttccagatagttgaaaatatgggatctgggcatatatttttcgacccgtcgtcgtgtcacggcaacatgctgttccttgggagcggagatcctgttttccgaggaccaagatcgacgatgatgaagatggaggactcctcgaagaggcgacccttctttagctcgccggaggatctatatgacgaggaatactacgacgagcagtcaccggagaagaagcgccgtctcactcctgagcaggttagcatcctgttcctcctttatctacccaaaatataaattaagtaaatgcgttttttt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0236E02-u8qcS/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0236E02.1" temp_strand="+" temp_description="C02HBa0236E02.1  AC215430.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0236E02 sequenced_by:kribb upload_account_name:korea">
        <position start="101331" stop="103203"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="101631" g_stop="102155" g_length="525"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="525" r_length="525" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="102156" i_stop="102705" i_length="550">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="102706" g_stop="102903" g_length="198"/>
          <reference_exon_boundary r_type="cDNA" r_start="526" r_stop="722" r_length="197" r_score="0.995"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0236E02.1" gen_strand="+" ref_id="SGN-E333531" ref_strand="+">
        <total_alignment_score>0.999</total_alignment_score>
        <cumulative_length_of_scored_exons>723</cumulative_length_of_scored_exons>
        <coverage percentage="1.001" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0236E02.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E333531" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="101631" e_stop="102155"/>
          <exon e_start="102706" e_stop="102903"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAAAACAGCACATATATATAGAGACAAAATCACATAATACGCCCTCGCCGGAATCTTATTTTCACTGTCGCCGGCCGTTAAAACTTTTTTTTTCTAGTTCGGAGGTCAAATAATTAACCTCCGATCGGAAGAAGTAGTTATTCTAACTGCTTCTATTTAATCTGAAAACGGGAAAACCCCTGAGCTGGTTAAGGTGGATTTCGTGATGGGATTTTGTATTTGTCCTTTGGAAACTCCTGCTAGATTACTGTGGAGTACTAGTTTCTTCCGCCACAAGCTTATGCTCTTCTAAAACTTAGTCAACTCTCTTTTTTCATACACATCCCTGCTAAAAAAGAAGAACTCTGTGCTGGAGTTTTTGTTTTCCTTTTTCTGTTTCGCCGGAAACATATAAATAATCTTCTGTGTGTAAATAGGCGATTTTCCAGATAGTTGAAAATATGGGATCTGGGCATATATTTTTCGACCCGTCGTCGTGTCACGGCAACATGCTGTTCCTTGGGAGCGGAGATCCTGTTTTCCGAGGTATTCTCTAATCATTATGTTCTCTATTCCAATTACTTATATTACTATGAAAATATAATTTAAGAACTTTTTTGATGACTCAATTCCACTATTAAAATTGAAAGTAAAGTATGTATATGATATGAGTAACACTATCACTAGAAAGTGAAATTCGTCTTGATCTGATTTAATTTTTTTGAATGATGTAAATTTTATTATTCAAATTTACAACCAAAACAAGTATAGAAATATTTTGTCCAAGTTAATTTATTCTGAATCGTACAAGATGAAACGAAGCGGTTAACTTGTAGGGTAACCTGCGATAGATGATTTATAATTTCAGTGTACGAAGAGGTTAAGATATACGTAGATCCTTCGTACATATTTTTATAAGTTGTTTCAGATAGATAGTTTTAAATTCAATTCACTTAGGGTATTGTTTTTATAGATTGATTATCTCTAGTACAGTAAAAATAATGATAAAATTGTAACAACCTTTTTGCATGTAAGTTCTAAGGGTGGCCTTTTATACTATTCTATTTTGAAGCTTGACTTATATTGATTGATACAGGACCAAGATCGACGATGATGAAGATGGAGGACTCCTCGAAGAGGCGACCCTTCTTTAGCTCGCCGGAGGATCTATATGACGAGGAATACTACGACGAGCAGTCACCGGAGAAGAAGCGCCGTCTCACTCCTGAGCAGGTTAGCATCCTGTTCCTCCTTTATCTACCCAAAAATATAAATTAAGTAAATGCGTTTTTTT</genome_strand>
        <mrna_strand>CAAAACAGCACATATATATAGAGACAAAATCACATAATACGCCCTCGCCGGAATCTTATTTTCACTGTCGCCGGCCGTTAAAACTTTTTTTTTCTAGTTCGGAGGTCAAATAATTAACCTCCGATCGGAAGAAGTAGTTATTCTAACTGCTTCTATTTAATCTGAAAACGGGAAAACCCCTGAGCTGGTTAAGGTGGATTTCGTGATGGGATTTTGTATTTGTCCTTTGGAAACTCCTGCTAGATTACTGTGGAGTACTAGTTTCTTCCGCCACAAGCTTATGCTCTTCTAAAACTTAGTCAACTCTCTTTTTTCATACACATCCCTGCTAAAAAAGAAGAACTCTGTGCTGGAGTTTTTGTTTTCCTTTTTCTGTTTCGCCGGAAACATATAAATAATCTTCTGTGTGTAAATAGGCGATTTTCCAGATAGTTGAAAATATGGGATCTGGGCATATATTTTTCGACCCGTCGTCGTGTCACGGCAACATGCTGTTCCTTGGGAGCGGAGATCCTGTTTTCCGAG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GACCAAGATCGACGATGATGAAGATGGAGGACTCCTCGAAGAGGCGACCCTTCTTTAGCTCGCCGGAGGATCTATATGACGAGGAATACTACGACGAGCAGTCACCGGAGAAGAAGCGCCGTCTCACTCCTGAGCAGGTTAGCATCCTGTTCCTCCTTTATCTACCC-AAAATATAAATTAAGTAAATGCGTTTTTTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0236E02-u8qcS/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E207270" ref_strand="+" ref_description="SGN-E207270 [cLEC-30-I17]">
      <seq>caaaacagcacatatatatagagacaaaatcacataatacgccctcgccggaatcttattttcactgtcgccggccgttaaaactttttttttctagttcggaggtcaaataattaacctccgatcggaagaagtagttattctaactgcttctatttaatctgaaaacgggaaaacccctgagctggttaaggtggatttcgtgatgggattttgtatttgtcctttggaaactcctgctagattactgtggagtactagtttcttccgccacaagcttatgctcttctaaaacttagtcaactctcttttttcatacacatccctgctaaaaaagaagaactctgtgctggagtttttgttttcctttttctgtttcgccggaaacatataaataatcttctgtgtgtaaataggcgattttccagatagttgaaaatatgggatctgggcatatatttttcgacccgtcgtcgtgtcacggcaacatgctgttccttgggagcggagatcctgttttccgaggaccaagatcgacgatgatgaagatggaggactcctcgaagaggcgacccttctttagctcgccggaggatctatatgacgaggaatactacgacgagcagt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0236E02-u8qcS/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0236E02.1" temp_strand="+" temp_description="C02HBa0236E02.1  AC215430.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0236E02 sequenced_by:kribb upload_account_name:korea">
        <position start="101331" stop="103107"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="101631" g_stop="102155" g_length="525"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="525" r_length="525" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="102156" i_stop="102705" i_length="550">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="102706" g_stop="102807" g_length="102"/>
          <reference_exon_boundary r_type="cDNA" r_start="526" r_stop="627" r_length="102" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0236E02.1" gen_strand="+" ref_id="SGN-E207270" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>627</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0236E02.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E207270" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="101631" e_stop="102155"/>
          <exon e_start="102706" e_stop="102807"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAAAACAGCACATATATATAGAGACAAAATCACATAATACGCCCTCGCCGGAATCTTATTTTCACTGTCGCCGGCCGTTAAAACTTTTTTTTTCTAGTTCGGAGGTCAAATAATTAACCTCCGATCGGAAGAAGTAGTTATTCTAACTGCTTCTATTTAATCTGAAAACGGGAAAACCCCTGAGCTGGTTAAGGTGGATTTCGTGATGGGATTTTGTATTTGTCCTTTGGAAACTCCTGCTAGATTACTGTGGAGTACTAGTTTCTTCCGCCACAAGCTTATGCTCTTCTAAAACTTAGTCAACTCTCTTTTTTCATACACATCCCTGCTAAAAAAGAAGAACTCTGTGCTGGAGTTTTTGTTTTCCTTTTTCTGTTTCGCCGGAAACATATAAATAATCTTCTGTGTGTAAATAGGCGATTTTCCAGATAGTTGAAAATATGGGATCTGGGCATATATTTTTCGACCCGTCGTCGTGTCACGGCAACATGCTGTTCCTTGGGAGCGGAGATCCTGTTTTCCGAGGTATTCTCTAATCATTATGTTCTCTATTCCAATTACTTATATTACTATGAAAATATAATTTAAGAACTTTTTTGATGACTCAATTCCACTATTAAAATTGAAAGTAAAGTATGTATATGATATGAGTAACACTATCACTAGAAAGTGAAATTCGTCTTGATCTGATTTAATTTTTTTGAATGATGTAAATTTTATTATTCAAATTTACAACCAAAACAAGTATAGAAATATTTTGTCCAAGTTAATTTATTCTGAATCGTACAAGATGAAACGAAGCGGTTAACTTGTAGGGTAACCTGCGATAGATGATTTATAATTTCAGTGTACGAAGAGGTTAAGATATACGTAGATCCTTCGTACATATTTTTATAAGTTGTTTCAGATAGATAGTTTTAAATTCAATTCACTTAGGGTATTGTTTTTATAGATTGATTATCTCTAGTACAGTAAAAATAATGATAAAATTGTAACAACCTTTTTGCATGTAAGTTCTAAGGGTGGCCTTTTATACTATTCTATTTTGAAGCTTGACTTATATTGATTGATACAGGACCAAGATCGACGATGATGAAGATGGAGGACTCCTCGAAGAGGCGACCCTTCTTTAGCTCGCCGGAGGATCTATATGACGAGGAATACTACGACGAGCAGT</genome_strand>
        <mrna_strand>CAAAACAGCACATATATATAGAGACAAAATCACATAATACGCCCTCGCCGGAATCTTATTTTCACTGTCGCCGGCCGTTAAAACTTTTTTTTTCTAGTTCGGAGGTCAAATAATTAACCTCCGATCGGAAGAAGTAGTTATTCTAACTGCTTCTATTTAATCTGAAAACGGGAAAACCCCTGAGCTGGTTAAGGTGGATTTCGTGATGGGATTTTGTATTTGTCCTTTGGAAACTCCTGCTAGATTACTGTGGAGTACTAGTTTCTTCCGCCACAAGCTTATGCTCTTCTAAAACTTAGTCAACTCTCTTTTTTCATACACATCCCTGCTAAAAAAGAAGAACTCTGTGCTGGAGTTTTTGTTTTCCTTTTTCTGTTTCGCCGGAAACATATAAATAATCTTCTGTGTGTAAATAGGCGATTTTCCAGATAGTTGAAAATATGGGATCTGGGCATATATTTTTCGACCCGTCGTCGTGTCACGGCAACATGCTGTTCCTTGGGAGCGGAGATCCTGTTTTCCGAG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GACCAAGATCGACGATGATGAAGATGGAGGACTCCTCGAAGAGGCGACCCTTCTTTAGCTCGCCGGAGGATCTATATGACGAGGAATACTACGACGAGCAGT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0236E02-u8qcS/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E308767" ref_strand="+" ref_description="SGN-E308767 [cLEZ-11-K14]">
      <seq>caaaacagcacatatatatagagacaaaatcacataatacgccctcgccggaatcttattttcactgtcgccggccgttaaaactttttttttctagttcggaggtcaaataattaacctccgatcggaagaagtagttattctaactgcttctatttaatctgaaaacgggaaaacccctgagctggttaaagtggatttcgtgatgggattttgtatttgtcctttggaaactcctgctagattactggggagtactagtttcttccgccacaagcttatgctcttctaaaacttagtcaactctcttttttcatacacatccctgctaaaaaagaagaactctgtgctggagtttttgttttcctttttctgtttcgccggaaacatataaataatcttctgtgtgtaaataggcgattttccagatagttgaaaatatgggatctgggcatatatttttcgacccgtcgtcgagtcacggcaacatgctgttccttgggagcggagatcctgttttccgaggaccaagatcgacgatgatgaagat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0236E02-u8qcS/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0236E02.1" temp_strand="+" temp_description="C02HBa0236E02.1  AC215430.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0236E02 sequenced_by:kribb upload_account_name:korea">
        <position start="101331" stop="103030"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="101631" g_stop="102155" g_length="525"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="525" r_length="525" r_score="0.994"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="102156" i_stop="102705" i_length="550">
            <donor d_prob="1.000" d_score="0.98"/>
            <acceptor a_prob="1.000" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="102706" g_stop="102730" g_length="25"/>
          <reference_exon_boundary r_type="cDNA" r_start="526" r_stop="550" r_length="25" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0236E02.1" gen_strand="+" ref_id="SGN-E308767" ref_strand="+">
        <total_alignment_score>0.994</total_alignment_score>
        <cumulative_length_of_scored_exons>550</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0236E02.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E308767" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="101631" e_stop="102155"/>
          <exon e_start="102706" e_stop="102730"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAAAACAGCACATATATATAGAGACAAAATCACATAATACGCCCTCGCCGGAATCTTATTTTCACTGTCGCCGGCCGTTAAAACTTTTTTTTTCTAGTTCGGAGGTCAAATAATTAACCTCCGATCGGAAGAAGTAGTTATTCTAACTGCTTCTATTTAATCTGAAAACGGGAAAACCCCTGAGCTGGTTAAGGTGGATTTCGTGATGGGATTTTGTATTTGTCCTTTGGAAACTCCTGCTAGATTACTGTGGAGTACTAGTTTCTTCCGCCACAAGCTTATGCTCTTCTAAAACTTAGTCAACTCTCTTTTTTCATACACATCCCTGCTAAAAAAGAAGAACTCTGTGCTGGAGTTTTTGTTTTCCTTTTTCTGTTTCGCCGGAAACATATAAATAATCTTCTGTGTGTAAATAGGCGATTTTCCAGATAGTTGAAAATATGGGATCTGGGCATATATTTTTCGACCCGTCGTCGTGTCACGGCAACATGCTGTTCCTTGGGAGCGGAGATCCTGTTTTCCGAGGTATTCTCTAATCATTATGTTCTCTATTCCAATTACTTATATTACTATGAAAATATAATTTAAGAACTTTTTTGATGACTCAATTCCACTATTAAAATTGAAAGTAAAGTATGTATATGATATGAGTAACACTATCACTAGAAAGTGAAATTCGTCTTGATCTGATTTAATTTTTTTGAATGATGTAAATTTTATTATTCAAATTTACAACCAAAACAAGTATAGAAATATTTTGTCCAAGTTAATTTATTCTGAATCGTACAAGATGAAACGAAGCGGTTAACTTGTAGGGTAACCTGCGATAGATGATTTATAATTTCAGTGTACGAAGAGGTTAAGATATACGTAGATCCTTCGTACATATTTTTATAAGTTGTTTCAGATAGATAGTTTTAAATTCAATTCACTTAGGGTATTGTTTTTATAGATTGATTATCTCTAGTACAGTAAAAATAATGATAAAATTGTAACAACCTTTTTGCATGTAAGTTCTAAGGGTGGCCTTTTATACTATTCTATTTTGAAGCTTGACTTATATTGATTGATACAGGACCAAGATCGACGATGATGAAGAT</genome_strand>
        <mrna_strand>CAAAACAGCACATATATATAGAGACAAAATCACATAATACGCCCTCGCCGGAATCTTATTTTCACTGTCGCCGGCCGTTAAAACTTTTTTTTTCTAGTTCGGAGGTCAAATAATTAACCTCCGATCGGAAGAAGTAGTTATTCTAACTGCTTCTATTTAATCTGAAAACGGGAAAACCCCTGAGCTGGTTAAAGTGGATTTCGTGATGGGATTTTGTATTTGTCCTTTGGAAACTCCTGCTAGATTACTGGGGAGTACTAGTTTCTTCCGCCACAAGCTTATGCTCTTCTAAAACTTAGTCAACTCTCTTTTTTCATACACATCCCTGCTAAAAAAGAAGAACTCTGTGCTGGAGTTTTTGTTTTCCTTTTTCTGTTTCGCCGGAAACATATAAATAATCTTCTGTGTGTAAATAGGCGATTTTCCAGATAGTTGAAAATATGGGATCTGGGCATATATTTTTCGACCCGTCGTCGAGTCACGGCAACATGCTGTTCCTTGGGAGCGGAGATCCTGTTTTCCGAG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GACCAAGATCGACGATGATGAAGAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0236E02-u8qcS/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E297411" ref_strand="+" ref_description="SGN-E297411 [cLEW-14-N22]">
      <seq>caaaacagcacatatatatagagacaaaatcacataatacgccctcgccggaatcttattttcactgtcgccggccgttaaaactttctttatttctagttcggaggtcaaataattaacctccgatcggaagaagtagttattctaactgcttctatttaatctgaaaacgggaaaacccctgagctggttaaggtggatttcgcgatgggattttgtatttgtcctttggaaactcctgctagattactgtggagtactagtttcttccgccacaagcttatgctcttctaaaacttagtcaactctcttttttcatacacat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0236E02-u8qcS/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0236E02.1" temp_strand="+" temp_description="C02HBa0236E02.1  AC215430.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0236E02 sequenced_by:kribb upload_account_name:korea">
        <position start="101331" stop="102253"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="101631" g_stop="101953" g_length="323"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="325" r_length="325" r_score="0.985"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0236E02.1" gen_strand="+" ref_id="SGN-E297411" ref_strand="+">
        <total_alignment_score>0.985</total_alignment_score>
        <cumulative_length_of_scored_exons>323</cumulative_length_of_scored_exons>
        <coverage percentage="0.994" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0236E02.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E297411" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="101631" e_stop="101953"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAAAACAGCACATATATATAGAGACAAAATCACATAATACGCCCTCGCCGGAATCTTATTTTCACTGTCGCCGGCCGTTAAAACTTT-TTT-TTTCTAGTTCGGAGGTCAAATAATTAACCTCCGATCGGAAGAAGTAGTTATTCTAACTGCTTCTATTTAATCTGAAAACGGGAAAACCCCTGAGCTGGTTAAGGTGGATTTCGTGATGGGATTTTGTATTTGTCCTTTGGAAACTCCTGCTAGATTACTGTGGAGTACTAGTTTCTTCCGCCACAAGCTTATGCTCTTCTAAAACTTAGTCAACTCTCTTTTTTCATACACAT</genome_strand>
        <mrna_strand>CAAAACAGCACATATATATAGAGACAAAATCACATAATACGCCCTCGCCGGAATCTTATTTTCACTGTCGCCGGCCGTTAAAACTTTCTTTATTTCTAGTTCGGAGGTCAAATAATTAACCTCCGATCGGAAGAAGTAGTTATTCTAACTGCTTCTATTTAATCTGAAAACGGGAAAACCCCTGAGCTGGTTAAGGTGGATTTCGCGATGGGATTTTGTATTTGTCCTTTGGAAACTCCTGCTAGATTACTGTGGAGTACTAGTTTCTTCCGCCACAAGCTTATGCTCTTCTAAAACTTAGTCAACTCTCTTTTTTCATACACAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0236E02-u8qcS/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E727404" ref_strand="+" ref_description="SGN-E727404 [LA14CD06]">
      <seq>aaaacagcacatatatatagagacaaaatcacataatacgccctcgccggaatcttattttcactgtcgccggccgttaaaactttttttttctagttcggaggtcaaataattaacctccgatcggaagaagtagttattctaactgcttctatttaatctgaaaacgggaaaacccctgagctggttaaggtggatttcgtgatgggattttgtatttgtcctttggaaactcctgctagattactgtggagtactagtttcttccgccacaagcttatgctcttctaaaacttagtcaactctcttttttcatacacatccctgctaaaaaagaagaactctgtgctggagtttttgttttcctttttctgtttcgccggaaacatataaataatcttctgtgtgtaaataggcgattttccagatagttgaaaatatgggatctgggcatatatttttcgacccgtcgtcgtgtcacggcaacatgctgttccttgggagcggagatcctgttttccgaggaccaagatcgacgatgatgaagatggaggactcctcgaagaggcgacccttctttacctcgccggaggatctatatgacgaggaatactacgacgagcagtcaccggagaagaagcgccgtctcactcctgagcaggtgcacttgttggagaagagctttgagacagaaaacaagctggagcccgagcgcaaaacccagctggccaaaaagctggggctgcagcccagacaggtggctgtatggttccaaaaccgccgtgcccggtggaagaacaagcagctcgagagggattatgatcagctcaaatcctcttatgactcccttctctctgattttgact</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0236E02-u8qcS/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0236E02.1" temp_strand="+" temp_description="C02HBa0236E02.1  AC215430.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0236E02 sequenced_by:kribb upload_account_name:korea">
        <position start="101332" stop="103795"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="101632" g_stop="102155" g_length="524"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="524" r_length="524" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="102156" i_stop="102705" i_length="550">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="102706" g_stop="102842" g_length="137"/>
          <reference_exon_boundary r_type="cDNA" r_start="525" r_stop="661" r_length="137" r_score="0.993"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="102843" i_stop="103290" i_length="448">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.784" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="103291" g_stop="103495" g_length="205"/>
          <reference_exon_boundary r_type="cDNA" r_start="662" r_stop="866" r_length="205" r_score="0.995"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0236E02.1" gen_strand="+" ref_id="SGN-E727404" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>866</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0236E02.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E727404" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="101632" e_stop="102155"/>
          <exon e_start="102706" e_stop="102842"/>
          <exon e_start="103291" e_stop="103495"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAACAGCACATATATATAGAGACAAAATCACATAATACGCCCTCGCCGGAATCTTATTTTCACTGTCGCCGGCCGTTAAAACTTTTTTTTTCTAGTTCGGAGGTCAAATAATTAACCTCCGATCGGAAGAAGTAGTTATTCTAACTGCTTCTATTTAATCTGAAAACGGGAAAACCCCTGAGCTGGTTAAGGTGGATTTCGTGATGGGATTTTGTATTTGTCCTTTGGAAACTCCTGCTAGATTACTGTGGAGTACTAGTTTCTTCCGCCACAAGCTTATGCTCTTCTAAAACTTAGTCAACTCTCTTTTTTCATACACATCCCTGCTAAAAAAGAAGAACTCTGTGCTGGAGTTTTTGTTTTCCTTTTTCTGTTTCGCCGGAAACATATAAATAATCTTCTGTGTGTAAATAGGCGATTTTCCAGATAGTTGAAAATATGGGATCTGGGCATATATTTTTCGACCCGTCGTCGTGTCACGGCAACATGCTGTTCCTTGGGAGCGGAGATCCTGTTTTCCGAGGTATTCTCTAATCATTATGTTCTCTATTCCAATTACTTATATTACTATGAAAATATAATTTAAGAACTTTTTTGATGACTCAATTCCACTATTAAAATTGAAAGTAAAGTATGTATATGATATGAGTAACACTATCACTAGAAAGTGAAATTCGTCTTGATCTGATTTAATTTTTTTGAATGATGTAAATTTTATTATTCAAATTTACAACCAAAACAAGTATAGAAATATTTTGTCCAAGTTAATTTATTCTGAATCGTACAAGATGAAACGAAGCGGTTAACTTGTAGGGTAACCTGCGATAGATGATTTATAATTTCAGTGTACGAAGAGGTTAAGATATACGTAGATCCTTCGTACATATTTTTATAAGTTGTTTCAGATAGATAGTTTTAAATTCAATTCACTTAGGGTATTGTTTTTATAGATTGATTATCTCTAGTACAGTAAAAATAATGATAAAATTGTAACAACCTTTTTGCATGTAAGTTCTAAGGGTGGCCTTTTATACTATTCTATTTTGAAGCTTGACTTATATTGATTGATACAGGACCAAGATCGACGATGATGAAGATGGAGGACTCCTCGAAGAGGCGACCCTTCTTTAGCTCGCCGGAGGATCTATATGACGAGGAATACTACGACGAGCAGTCACCGGAGAAGAAGCGCCGTCTCACTCCTGAGCAGGTTAGCATCCTGTTCCTCCTTTATCTACCCAAAAATATAAATTAAGTAAATGCGTTTTTTTAATAGTTCGATGGAGTAGTTATCAATTCAACATACTGTGACATATATCTCCTAGCTATCAAGATAGTTAAATTTTTTGGTTCAAATCTCACCATCACATATTTTTGGCAATTGGCCACTACATGTGAAACGATTTGTTTAGTCAAATTATAATTAAGTAACTAAAGAAGATTCCCTCTAAAGTGATTTAAGTTTTTAATTATATTGGAACATATTCACCACTATAGCATCAAATTCTTCACAATATCTACCTTTAAACCCTGAAAAGAAGAGAATTTCTTTTTTATCAACGAGCGTTTTCTTTAAGCAAAATTTTATAATTTTGTGGGATTCGATTACTTGCTGAGCAATAAGTGCATGTCCTGCGTTGTTGGGTACGTAAATGAAGGTGCACTTGTTGGAGAAGAGCTTTGAGACAGAAAACAAGCTGGAGCCCGAGCGCAAAACCCAGCTGGCCAAAAAGCTGGGGCTGCAGCCCAGACAGGTGGCTGTATGGTTCCAAAACCGCCGTGCCCGGTGGAAGACCAAGCAGCTCGAGAGGGATTATGATCAGCTCAAATCCTCTTATGACTCCCTTCTCTCTGATTTTGACT</genome_strand>
        <mrna_strand>AAAACAGCACATATATATAGAGACAAAATCACATAATACGCCCTCGCCGGAATCTTATTTTCACTGTCGCCGGCCGTTAAAACTTTTTTTTTCTAGTTCGGAGGTCAAATAATTAACCTCCGATCGGAAGAAGTAGTTATTCTAACTGCTTCTATTTAATCTGAAAACGGGAAAACCCCTGAGCTGGTTAAGGTGGATTTCGTGATGGGATTTTGTATTTGTCCTTTGGAAACTCCTGCTAGATTACTGTGGAGTACTAGTTTCTTCCGCCACAAGCTTATGCTCTTCTAAAACTTAGTCAACTCTCTTTTTTCATACACATCCCTGCTAAAAAAGAAGAACTCTGTGCTGGAGTTTTTGTTTTCCTTTTTCTGTTTCGCCGGAAACATATAAATAATCTTCTGTGTGTAAATAGGCGATTTTCCAGATAGTTGAAAATATGGGATCTGGGCATATATTTTTCGACCCGTCGTCGTGTCACGGCAACATGCTGTTCCTTGGGAGCGGAGATCCTGTTTTCCGAG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GACCAAGATCGACGATGATGAAGATGGAGGACTCCTCGAAGAGGCGACCCTTCTTTACCTCGCCGGAGGATCTATATGACGAGGAATACTACGACGAGCAGTCACCGGAGAAGAAGCGCCGTCTCACTCCTGAGCAG................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGCACTTGTTGGAGAAGAGCTTTGAGACAGAAAACAAGCTGGAGCCCGAGCGCAAAACCCAGCTGGCCAAAAAGCTGGGGCTGCAGCCCAGACAGGTGGCTGTATGGTTCCAAAACCGCCGTGCCCGGTGGAAGAACAAGCAGCTCGAGAGGGATTATGATCAGCTCAAATCCTCTTATGACTCCCTTCTCTCTGATTTTGACT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0236E02-u8qcS/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E566898" ref_strand="+" ref_description="SGN-E566898 [10940]">
      <seq>acaaaacaacgtatatacagacaaaatcacataatacgccctcggccgggaatcttattttcactgtcaccggccgttataacttttttttttccagttcggaggtcaaataattaaactccgatctgaagaagtagttattctaactgcttctatttaatctgaaaacgggaaaaacccctgagctgggtaaggtggatttcgtgatgggattttgtatttgtcctttggaaactcctgctagattactgtggagtactagtttcttccgccacaagcttatgctcttctaaaactttgtcaactctctttttcatacacatcccctgctaaaaaaagaactctgttctggagtttattttctcttttctgtttcgccggaaacatataaataatcttctgtgggtaaataggcgatcttccagatcattgaaaatatgggatctgggcatatatttttcgacccgtcgtcgtgtcacggcaacatgctgttcct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0236E02-u8qcS/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0236E02.1" temp_strand="+" temp_description="C02HBa0236E02.1  AC215430.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0236E02 sequenced_by:kribb upload_account_name:korea">
        <position start="101335" stop="102429"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="101633" g_stop="102129" g_length="497"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="496" r_length="496" r_score="0.926"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0236E02.1" gen_strand="+" ref_id="SGN-E566898" ref_strand="+">
        <total_alignment_score>0.926</total_alignment_score>
        <cumulative_length_of_scored_exons>497</cumulative_length_of_scored_exons>
        <coverage percentage="1.002" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0236E02.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E566898" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="101633" e_stop="102129"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAACAGCACATATATATAGAGACAAAATCACATAATACGCCCTC-GCC-GGAATCTTATTTTCACTGTCGCCGGCCGTTAAAAC-TTTTTTTTTCTAGTTCGGAGGTCAAATAATTAACCTCCGATCGGAAGAAGTAGTTATTCTAACTGCTTCTATTTAATCTGAAAACGGG-AAAACCCCTGAGCTGGTTAAGGTGGATTTCGTGATGGGATTTTGTATTTGTCCTTTGGAAACTCCTGCTAGATTACTGTGGAGTACTAGTTTCTTCCGCCACAAGCTTATGCTCTTCTAAAACTTAGTCAACTCTCTTTTTTCATACACAT-CCCTGCTAAAAAAGAAGAACTCTGTGCTGGAGTTTTTGTTTTCCTTTTTCTGTTTCGCCGGAAACATATAAATAATCTTCTGTGTGTAAATAGGCGATTTTCCAGATAGTTGAAAATATGGGATCTGGGCATATATTTTTCGACCCGTCGTCGTGTCACGGCAACATGCTGTTCCT</genome_strand>
        <mrna_strand>ACAAAACA-ACGTATATACAGACAAAATCACATAATACGCCCTCGGCCGGGAATCTTATTTTCACTGTCACCGGCCGTTATAACTTTTTTTTTTCCAGTTCGGAGGTCAAATAATTAAACTCCGATCTGAAGAAGTAGTTATTCTAACTGCTTCTATTTAATCTGAAAACGGGAAAAACCCCTGAGCTGGGTAAGGTGGATTTCGTGATGGGATTTTGTATTTGTCCTTTGGAAACTCCTGCTAGATTACTGTGGAGTACTAGTTTCTTCCGCCACAAGCTTATGCTCTTCTAAAACTTTGTCAACTCTC-TTTTTCATACACATCCCCTGCT-AAAAA-AAGAACTCTGTTCTGGAG--TTTATTTTCTCTTTTCTGTTTCGCCGGAAACATATAAATAATCTTCTGTGGGTAAATAGGCGATCTTCCAGATCATTGAAAATATGGGATCTGGGCATATATTTTTCGACCCGTCGTCGTGTCACGGCAACATGCTGTTCCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0236E02-u8qcS/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E573271" ref_strand="+" ref_description="SGN-E573271 [32555]">
      <seq>aaacaacgtatatatagacaaaatcacataatactccctcgccggaatcttattttcactgtcaccggccgttataactttttttttccagttcggaggtcaaataattaaactccgatctgaagaagtagttattctaactgcttctatttaatctgaaaacgggaaaaacccctgaactgggtaaggtggatttcgtgatgggattttgtatttgtcctttggaaactcctgctagattactgtggagtactagtttcttccgccacaagcttatgctcttctaaaactttgtcaactctcttcttcatacacatcccctgctaaaaaaagaactctgttctggagtttattttctcttttctgtttcgccggaaacatataaataatcttctgtgggtaaataggcgatcttccagatcattgaaaatatgggatctgggcatatattttttgacccgtcgtcgtgtcacggcaacatgctgttccttggcaatggagatcctgttttccgaggaccaagatcgacaatgatgaagatggaggactcctcgaagaggcgacccttctttagctcaccggaggatctatatgacagaggaatactacgattagcagtcaccggagaaggaagcgccgtctcactcctgagca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0236E02-u8qcS/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0236E02.1" temp_strand="+" temp_description="C02HBa0236E02.1  AC215430.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0236E02 sequenced_by:kribb upload_account_name:korea">
        <position start="101337" stop="103141"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="101636" g_stop="102155" g_length="520"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="516" r_length="516" r_score="0.929"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="102156" i_stop="102705" i_length="550">
            <donor d_prob="1.000" d_score="0.94"/>
            <acceptor a_prob="1.000" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="102706" g_stop="102838" g_length="133"/>
          <reference_exon_boundary r_type="cDNA" r_start="517" r_stop="651" r_length="135" r_score="0.940"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0236E02.1" gen_strand="+" ref_id="SGN-E573271" ref_strand="+">
        <total_alignment_score>0.931</total_alignment_score>
        <cumulative_length_of_scored_exons>653</cumulative_length_of_scored_exons>
        <coverage percentage="0.998" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0236E02.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E573271" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="101636" e_stop="102155"/>
          <exon e_start="102706" e_stop="102838"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAGCACATATATATAGAGACAAAATCACATAATACGCCCTCGCCGGAATCTTATTTTCACTGTCGCCGGCCGTTAAAACTTTTTTTTTCTAGTTCGGAGGTCAAATAATTAACCTCCGATCGGAAGAAGTAGTTATTCTAACTGCTTCTATTTAATCTGAAAACGGG-AAAACCCCTGAGCTGGTTAAGGTGGATTTCGTGATGGGATTTTGTATTTGTCCTTTGGAAACTCCTGCTAGATTACTGTGGAGTACTAGTTTCTTCCGCCACAAGCTTATGCTCTTCTAAAACTTAGTCAACTCTCTTTTTTCATACACAT-CCCTGCTAAAAAAGAAGAACTCTGTGCTGGAGTTTTTGTTTTCCTTTTTCTGTTTCGCCGGAAACATATAAATAATCTTCTGTGTGTAAATAGGCGATTTTCCAGATAGTTGAAAATATGGGATCTGGGCATATATTTTTCGACCCGTCGTCGTGTCACGGCAACATGCTGTTCCTTGGGAGCGGAGATCCTGTTTTCCGAGGTATTCTCTAATCATTATGTTCTCTATTCCAATTACTTATATTACTATGAAAATATAATTTAAGAACTTTTTTGATGACTCAATTCCACTATTAAAATTGAAAGTAAAGTATGTATATGATATGAGTAACACTATCACTAGAAAGTGAAATTCGTCTTGATCTGATTTAATTTTTTTGAATGATGTAAATTTTATTATTCAAATTTACAACCAAAACAAGTATAGAAATATTTTGTCCAAGTTAATTTATTCTGAATCGTACAAGATGAAACGAAGCGGTTAACTTGTAGGGTAACCTGCGATAGATGATTTATAATTTCAGTGTACGAAGAGGTTAAGATATACGTAGATCCTTCGTACATATTTTTATAAGTTGTTTCAGATAGATAGTTTTAAATTCAATTCACTTAGGGTATTGTTTTTATAGATTGATTATCTCTAGTACAGTAAAAATAATGATAAAATTGTAACAACCTTTTTGCATGTAAGTTCTAAGGGTGGCCTTTTATACTATTCTATTTTGAAGCTTGACTTATATTGATTGATACAGGACCAAGATCGACGATGATGAAGATGGAGGACTCCTCGAAGAGGCGACCCTTCTTTAGCTCGCCGGAGGATCTATATGAC-GAGGAATACTACGACGAGCAGTCACCGGAGAA-GAAGCGCCGTCTCACTCCTGA</genome_strand>
        <mrna_strand>AAACA-ACGTATATATAGACAAAATCACATAATACTCCCTCGCCGGAATCTTATTTTCACTGTCACCGGCCGTTATAACTTTTTTTTTCCAGTTCGGAGGTCAAATAATTAAACTCCGATCTGAAGAAGTAGTTATTCTAACTGCTTCTATTTAATCTGAAAACGGGAAAAACCCCTGAACTGGGTAAGGTGGATTTCGTGATGGGATTTTGTATTTGTCCTTTGGAAACTCCTGCTAGATTACTGTGGAGTACTAGTTTCTTCCGCCACAAGCTTATGCTCTTCTAAAACTTTGTCAACTCTC-TTCTTCATACACATCCCCTGCT-AAAAA-AAGAACTCTGTTCTGGAG--TTTATTTTCTCTTTTCTGTTTCGCCGGAAACATATAAATAATCTTCTGTGGGTAAATAGGCGATCTTCCAGATCATTGAAAATATGGGATCTGGGCATATATTTTTTGACCCGTCGTCGTGTCACGGCAACATGCTGTTCCTTGGCAATGGAGATCCTGTTTTCCGAG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GACCAAGATCGACAATGATGAAGATGGAGGACTCCTCGAAGAGGCGACCCTTCTTTAGCTCACCGGAGGATCTATATGACAGAGGAATACTACGATTAGCAGTCACCGGAGAAGGAAGCGCCGTCTCACTCCTGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0236E02-u8qcS/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E578715" ref_strand="+" ref_description="SGN-E578715 [85835]">
      <seq>aaacaacgtatatacagacaaatcacataatacgccctcccggattcttattttcactgtcacggcgttataacttttttttcccagtcggaggtcaataattaactccgatctgaagaagtagttattctaactgcttctatttaatctgaaaacgggaaaaacccctgagctgggtaaggtggatttcgtgatgggattttgtatttgtcctttggaaactcctgctagattactgtggagtactagtttcttccgccacaagcttatgctcttctaaaactttgtcaactctctttttcatacacatcccctgctaaaaaaagaactctgttctggagtttattttctcttttctgtttcgccggaaacatataaataatcttctgtgggtaaataggcgatcttccagatcattgaaaatatgggatctgggcatatatttttcgacccgtcgtcgtgtcacggcaacatgctgttccttggcaacggagatcctgttttccgaggaccaagatcgacgatgatgaagatggaggactcctcgaagaggcgacccttctttagctcaccggaggatctatatgacgaggattactacgatgagcagtcaccggagaagaagcgccgtctcactcctgagcaggtgcacttgtgtggaggaagagcttttgagacagagaacaaagctgggagcccgaaacgcaaggacccagct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0236E02-u8qcS/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0236E02.1" temp_strand="+" temp_description="C02HBa0236E02.1  AC215430.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0236E02 sequenced_by:kribb upload_account_name:korea">
        <position start="101337" stop="103144"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="101636" g_stop="102155" g_length="520"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="509" r_length="509" r_score="0.923"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="102156" i_stop="102705" i_length="550">
            <donor d_prob="1.000" d_score="0.96"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="102706" g_stop="102838" g_length="133"/>
          <reference_exon_boundary r_type="cDNA" r_start="510" r_stop="642" r_length="133" r_score="0.977"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0236E02.1" gen_strand="+" ref_id="SGN-E578715" ref_strand="+">
        <total_alignment_score>0.934</total_alignment_score>
        <cumulative_length_of_scored_exons>653</cumulative_length_of_scored_exons>
        <coverage percentage="0.909" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0236E02.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E578715" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="101636" e_stop="102155"/>
          <exon e_start="102706" e_stop="102838"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAGCACATATATATAGAGACAAAATCACATAATACGCCCTCGCCGGAATCTTATTTTCACTGTCGCCGGCCGTTAAAACTTTTTTTTTCTAGTTCGGAGGTCAAATAATTAACCTCCGATCGGAAGAAGTAGTTATTCTAACTGCTTCTATTTAATCTGAAAACGGG-AAAACCCCTGAGCTGGTTAAGGTGGATTTCGTGATGGGATTTTGTATTTGTCCTTTGGAAACTCCTGCTAGATTACTGTGGAGTACTAGTTTCTTCCGCCACAAGCTTATGCTCTTCTAAAACTTAGTCAACTCTCTTTTTTCATACACAT-CCCTGCTAAAAAAGAAGAACTCTGTGCTGGAGTTTTTGTTTTCCTTTTTCTGTTTCGCCGGAAACATATAAATAATCTTCTGTGTGTAAATAGGCGATTTTCCAGATAGTTGAAAATATGGGATCTGGGCATATATTTTTCGACCCGTCGTCGTGTCACGGCAACATGCTGTTCCTTGGGAGCGGAGATCCTGTTTTCCGAGGTATTCTCTAATCATTATGTTCTCTATTCCAATTACTTATATTACTATGAAAATATAATTTAAGAACTTTTTTGATGACTCAATTCCACTATTAAAATTGAAAGTAAAGTATGTATATGATATGAGTAACACTATCACTAGAAAGTGAAATTCGTCTTGATCTGATTTAATTTTTTTGAATGATGTAAATTTTATTATTCAAATTTACAACCAAAACAAGTATAGAAATATTTTGTCCAAGTTAATTTATTCTGAATCGTACAAGATGAAACGAAGCGGTTAACTTGTAGGGTAACCTGCGATAGATGATTTATAATTTCAGTGTACGAAGAGGTTAAGATATACGTAGATCCTTCGTACATATTTTTATAAGTTGTTTCAGATAGATAGTTTTAAATTCAATTCACTTAGGGTATTGTTTTTATAGATTGATTATCTCTAGTACAGTAAAAATAATGATAAAATTGTAACAACCTTTTTGCATGTAAGTTCTAAGGGTGGCCTTTTATACTATTCTATTTTGAAGCTTGACTTATATTGATTGATACAGGACCAAGATCGACGATGATGAAGATGGAGGACTCCTCGAAGAGGCGACCCTTCTTTAGCTCGCCGGAGGATCTATATGACGAGGAATACTACGACGAGCAGTCACCGGAGAAGAAGCGCCGTCTCACTCCTGA</genome_strand>
        <mrna_strand>AAACA-ACGTATATACAGAC-AAATCACATAATACGCCCTC-CCGGATTCTTATTTTCACTGTC-ACGG-CGTTATAACTTTTTTTTCCCAG-TCGGAGGTC-AATAATTAAC-TCCGATCTGAAGAAGTAGTTATTCTAACTGCTTCTATTTAATCTGAAAACGGGAAAAACCCCTGAGCTGGGTAAGGTGGATTTCGTGATGGGATTTTGTATTTGTCCTTTGGAAACTCCTGCTAGATTACTGTGGAGTACTAGTTTCTTCCGCCACAAGCTTATGCTCTTCTAAAACTTTGTCAACTCTC-TTTTTCATACACATCCCCTGCT-AAAAA-AAGAACTCTGTTCTGGAG--TTTATTTTCTCTTTTCTGTTTCGCCGGAAACATATAAATAATCTTCTGTGGGTAAATAGGCGATCTTCCAGATCATTGAAAATATGGGATCTGGGCATATATTTTTCGACCCGTCGTCGTGTCACGGCAACATGCTGTTCCTTGGCAACGGAGATCCTGTTTTCCGAG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GACCAAGATCGACGATGATGAAGATGGAGGACTCCTCGAAGAGGCGACCCTTCTTTAGCTCACCGGAGGATCTATATGACGAGGATTACTACGATGAGCAGTCACCGGAGAAGAAGCGCCGTCTCACTCCTGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0236E02-u8qcS/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E453415" ref_strand="+" ref_description="SGN-E453415 [cSTS-19-N6]">
      <seq>aaacaacgtatatacagacaaaatcacataatacgccctcgccggaatcttattttcactgtcaccggccgttataactttttttttccagttcggaggtcaaataattaaactccgatctgaagaagtagttattctaactgcttctatttaatctgaaaacgggaaaaacccctgagctgggtaaggtggatttcgtgatgggattttgtatttgtcctttggaaactcctgctagattactgtggagtactagtttcttccgccacaagcttatgctcttctaaaactttgtcaactctctttttcatacacatcccctgctaaaaaaagaactctgttctggagtttattttctcttttctgtttcgccggaaacatataaataatcttctgtgggtaaataggcgatcttccagatcattgaaaatatgggatctgggcatatatttttcgacccgtcgtcgtgtcacggcaacatgctgttccttggcaacggagatcctgttttccgaggaccaagatcgacgatgatgaagatggangactcctcgaagaggcgacccttctttagctcaccggaggatctatatgacgaggattactacgatgagcagt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0236E02-u8qcS/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0236E02.1" temp_strand="+" temp_description="C02HBa0236E02.1  AC215430.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0236E02 sequenced_by:kribb upload_account_name:korea">
        <position start="101337" stop="103107"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="101636" g_stop="102155" g_length="520"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="516" r_length="516" r_score="0.938"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="102156" i_stop="102705" i_length="550">
            <donor d_prob="1.000" d_score="0.96"/>
            <acceptor a_prob="1.000" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="102706" g_stop="102807" g_length="102"/>
          <reference_exon_boundary r_type="cDNA" r_start="517" r_stop="618" r_length="102" r_score="0.961"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0236E02.1" gen_strand="+" ref_id="SGN-E453415" ref_strand="+">
        <total_alignment_score>0.942</total_alignment_score>
        <cumulative_length_of_scored_exons>622</cumulative_length_of_scored_exons>
        <coverage percentage="1.006" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0236E02.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E453415" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="101636" e_stop="102155"/>
          <exon e_start="102706" e_stop="102807"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAGCACATATATATAGAGACAAAATCACATAATACGCCCTCGCCGGAATCTTATTTTCACTGTCGCCGGCCGTTAAAACTTTTTTTTTCTAGTTCGGAGGTCAAATAATTAACCTCCGATCGGAAGAAGTAGTTATTCTAACTGCTTCTATTTAATCTGAAAACGGG-AAAACCCCTGAGCTGGTTAAGGTGGATTTCGTGATGGGATTTTGTATTTGTCCTTTGGAAACTCCTGCTAGATTACTGTGGAGTACTAGTTTCTTCCGCCACAAGCTTATGCTCTTCTAAAACTTAGTCAACTCTCTTTTTTCATACACAT-CCCTGCTAAAAAAGAAGAACTCTGTGCTGGAGTTTTTGTTTTCCTTTTTCTGTTTCGCCGGAAACATATAAATAATCTTCTGTGTGTAAATAGGCGATTTTCCAGATAGTTGAAAATATGGGATCTGGGCATATATTTTTCGACCCGTCGTCGTGTCACGGCAACATGCTGTTCCTTGGGAGCGGAGATCCTGTTTTCCGAGGTATTCTCTAATCATTATGTTCTCTATTCCAATTACTTATATTACTATGAAAATATAATTTAAGAACTTTTTTGATGACTCAATTCCACTATTAAAATTGAAAGTAAAGTATGTATATGATATGAGTAACACTATCACTAGAAAGTGAAATTCGTCTTGATCTGATTTAATTTTTTTGAATGATGTAAATTTTATTATTCAAATTTACAACCAAAACAAGTATAGAAATATTTTGTCCAAGTTAATTTATTCTGAATCGTACAAGATGAAACGAAGCGGTTAACTTGTAGGGTAACCTGCGATAGATGATTTATAATTTCAGTGTACGAAGAGGTTAAGATATACGTAGATCCTTCGTACATATTTTTATAAGTTGTTTCAGATAGATAGTTTTAAATTCAATTCACTTAGGGTATTGTTTTTATAGATTGATTATCTCTAGTACAGTAAAAATAATGATAAAATTGTAACAACCTTTTTGCATGTAAGTTCTAAGGGTGGCCTTTTATACTATTCTATTTTGAAGCTTGACTTATATTGATTGATACAGGACCAAGATCGACGATGATGAAGATGGAGGACTCCTCGAAGAGGCGACCCTTCTTTAGCTCGCCGGAGGATCTATATGACGAGGAATACTACGACGAGCAGT</genome_strand>
        <mrna_strand>AAACA-ACGTATATACAGACAAAATCACATAATACGCCCTCGCCGGAATCTTATTTTCACTGTCACCGGCCGTTATAACTTTTTTTTTCCAGTTCGGAGGTCAAATAATTAAACTCCGATCTGAAGAAGTAGTTATTCTAACTGCTTCTATTTAATCTGAAAACGGGAAAAACCCCTGAGCTGGGTAAGGTGGATTTCGTGATGGGATTTTGTATTTGTCCTTTGGAAACTCCTGCTAGATTACTGTGGAGTACTAGTTTCTTCCGCCACAAGCTTATGCTCTTCTAAAACTTTGTCAACTCTC-TTTTTCATACACATCCCCTGCT-AAAAA-AAGAACTCTGTTCTGGAG--TTTATTTTCTCTTTTCTGTTTCGCCGGAAACATATAAATAATCTTCTGTGGGTAAATAGGCGATCTTCCAGATCATTGAAAATATGGGATCTGGGCATATATTTTTCGACCCGTCGTCGTGTCACGGCAACATGCTGTTCCTTGGCAACGGAGATCCTGTTTTCCGAG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GACCAAGATCGACGATGATGAAGATGGANGACTCCTCGAAGAGGCGACCCTTCTTTAGCTCACCGGAGGATCTATATGACGAGGATTACTACGATGAGCAGT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0236E02-u8qcS/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E365709" ref_strand="+" ref_description="SGN-E365709 [cLPT-8-A18]">
      <seq>agcatatatatatacggacaaaatcacataatacgccctcgccggaatcttattttcactgtcgccggccgttaaaacttcttttttttttctagttcggaggtcaaataattaacctccgatcggaagaagaagctattctaactgcttctatttaatctgaaaacgggaaaacccctgagctgggtaagggggatttcgtgatgggattttgtatttgtcctttggaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0236E02-u8qcS/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0236E02.1" temp_strand="+" temp_description="C02HBa0236E02.1  AC215430.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0236E02 sequenced_by:kribb upload_account_name:korea">
        <position start="101337" stop="102163"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="101637" g_stop="101863" g_length="227"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="231" r_length="231" r_score="0.934"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0236E02.1" gen_strand="+" ref_id="SGN-E365709" ref_strand="+">
        <total_alignment_score>0.934</total_alignment_score>
        <cumulative_length_of_scored_exons>227</cumulative_length_of_scored_exons>
        <coverage percentage="0.983" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0236E02.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E365709" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="101637" e_stop="101863"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGCACATATATATAGAGACAAAATCACATAATACGCCCTCGCCGGAATCTTATTTTCACTGTCGCCGGCCGTTAAAA---C-TTTTTTTTTCTAGTTCGGAGGTCAAATAATTAACCTCCGATCGGAAGAAGTAGTTATTCTAACTGCTTCTATTTAATCTGAAAACGGGAAAACCCCTGAGCTGGTTAAGGTGGATTTCGTGATGGGATTTTGTATTTGTCCTTTGGAAA</genome_strand>
        <mrna_strand>AGCATATATATATACGGACAAAATCACATAATACGCCCTCGCCGGAATCTTATTTTCACTGTCGCCGGCCGTTAAAACTTCTTTTTTTTTTCTAGTTCGGAGGTCAAATAATTAACCTCCGATCGGAAGAAGAAGCTATTCTAACTGCTTCTATTTAATCTGAAAACGGGAAAACCCCTGAGCTGGGTAAGGGGGATTTCGTGATGGGATTTTGTATTTGTCCTTTGGAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0236E02-u8qcS/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E267889" ref_strand="+" ref_description="SGN-E267889 [cLEI-12-J13]">
      <seq>cacatatatatagagacaaaatcacataatacgccctcgccggaatcttattttcactgtcgccggccgttaaaactttttttttctagttcggaggtcaaataattaacctccgatcggaagaagtagttattctaactgcttctatttaatctgaaaacgggaaaacccctgagctggttaaggtggatttcgtgatgggattttgtatttgtcctttggaaactcctgctagattactgtggagtactagtttcttccgccacaagcttatgctcttctaaaacttagtcaactctcttttttcatacacatccctgctaaaaaagaagaactctgtgctggagtttttgttttcctttttctgtttcgccggaaacatataaataatcttctgtgtgtaaatag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0236E02-u8qcS/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0236E02.1" temp_strand="+" temp_description="C02HBa0236E02.1  AC215430.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0236E02 sequenced_by:kribb upload_account_name:korea">
        <position start="101339" stop="102346"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="101639" g_stop="102046" g_length="408"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="408" r_length="408" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0236E02.1" gen_strand="+" ref_id="SGN-E267889" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>408</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0236E02.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E267889" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="101639" e_stop="102046"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CACATATATATAGAGACAAAATCACATAATACGCCCTCGCCGGAATCTTATTTTCACTGTCGCCGGCCGTTAAAACTTTTTTTTTCTAGTTCGGAGGTCAAATAATTAACCTCCGATCGGAAGAAGTAGTTATTCTAACTGCTTCTATTTAATCTGAAAACGGGAAAACCCCTGAGCTGGTTAAGGTGGATTTCGTGATGGGATTTTGTATTTGTCCTTTGGAAACTCCTGCTAGATTACTGTGGAGTACTAGTTTCTTCCGCCACAAGCTTATGCTCTTCTAAAACTTAGTCAACTCTCTTTTTTCATACACATCCCTGCTAAAAAAGAAGAACTCTGTGCTGGAGTTTTTGTTTTCCTTTTTCTGTTTCGCCGGAAACATATAAATAATCTTCTGTGTGTAAATAG</genome_strand>
        <mrna_strand>CACATATATATAGAGACAAAATCACATAATACGCCCTCGCCGGAATCTTATTTTCACTGTCGCCGGCCGTTAAAACTTTTTTTTTCTAGTTCGGAGGTCAAATAATTAACCTCCGATCGGAAGAAGTAGTTATTCTAACTGCTTCTATTTAATCTGAAAACGGGAAAACCCCTGAGCTGGTTAAGGTGGATTTCGTGATGGGATTTTGTATTTGTCCTTTGGAAACTCCTGCTAGATTACTGTGGAGTACTAGTTTCTTCCGCCACAAGCTTATGCTCTTCTAAAACTTAGTCAACTCTCTTTTTTCATACACATCCCTGCTAAAAAAGAAGAACTCTGTGCTGGAGTTTTTGTTTTCCTTTTTCTGTTTCGCCGGAAACATATAAATAATCTTCTGTGTGTAAATAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0236E02-u8qcS/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E207269" ref_strand="+" ref_description="SGN-E207269 [cLEC-30-I13]">
      <seq>catatatatagagacaaaatcacataatacgccctcgccggaatcttattttcactgtcgccggccgttaaaactttttttttctagttcggaggtcaaataattaacctccgatcggaagaagtagttattctaactgcttctatttaatctgaaaacgggaaaacccctgagctggttaaggtggatttcgtgatgggattttgtatttgtcctttggaaactcctgctagattactgtggagtactagtttcttccgccacaagcttatgctcttctaaaacttagtcaactctcttttttcatacacatccctgctaaaaaagaagaactctgtgctggagtttttgttttcctttttctgtttcgccggaaacatataaataatcttctgggtgtaaataggcgattttccagatagttgaaaatatgggatctgggcatatatttttcgacc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0236E02-u8qcS/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0236E02.1" temp_strand="+" temp_description="C02HBa0236E02.1  AC215430.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0236E02 sequenced_by:kribb upload_account_name:korea">
        <position start="101341" stop="102398"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="101641" g_stop="102098" g_length="458"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="458" r_length="458" r_score="0.998"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0236E02.1" gen_strand="+" ref_id="SGN-E207269" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>458</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0236E02.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E207269" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="101641" e_stop="102098"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CATATATATAGAGACAAAATCACATAATACGCCCTCGCCGGAATCTTATTTTCACTGTCGCCGGCCGTTAAAACTTTTTTTTTCTAGTTCGGAGGTCAAATAATTAACCTCCGATCGGAAGAAGTAGTTATTCTAACTGCTTCTATTTAATCTGAAAACGGGAAAACCCCTGAGCTGGTTAAGGTGGATTTCGTGATGGGATTTTGTATTTGTCCTTTGGAAACTCCTGCTAGATTACTGTGGAGTACTAGTTTCTTCCGCCACAAGCTTATGCTCTTCTAAAACTTAGTCAACTCTCTTTTTTCATACACATCCCTGCTAAAAAAGAAGAACTCTGTGCTGGAGTTTTTGTTTTCCTTTTTCTGTTTCGCCGGAAACATATAAATAATCTTCTGTGTGTAAATAGGCGATTTTCCAGATAGTTGAAAATATGGGATCTGGGCATATATTTTTCGACC</genome_strand>
        <mrna_strand>CATATATATAGAGACAAAATCACATAATACGCCCTCGCCGGAATCTTATTTTCACTGTCGCCGGCCGTTAAAACTTTTTTTTTCTAGTTCGGAGGTCAAATAATTAACCTCCGATCGGAAGAAGTAGTTATTCTAACTGCTTCTATTTAATCTGAAAACGGGAAAACCCCTGAGCTGGTTAAGGTGGATTTCGTGATGGGATTTTGTATTTGTCCTTTGGAAACTCCTGCTAGATTACTGTGGAGTACTAGTTTCTTCCGCCACAAGCTTATGCTCTTCTAAAACTTAGTCAACTCTCTTTTTTCATACACATCCCTGCTAAAAAAGAAGAACTCTGTGCTGGAGTTTTTGTTTTCCTTTTTCTGTTTCGCCGGAAACATATAAATAATCTTCTGGGTGTAAATAGGCGATTTTCCAGATAGTTGAAAATATGGGATCTGGGCATATATTTTTCGACC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0236E02-u8qcS/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E327132" ref_strand="+" ref_description="SGN-E327132 [cTOC-18-O19]">
      <seq>atatatatagagacaaaatcacataatacgccctcgccggaatcttattttcactgtcgccggccgttaaaactttttttttctagttcggaggtcaaataattaacctccgatcggaagaagtagttattctaactgcttctatttaatctgaaaacgggaaaacccctgagctggttaaggtggatttcgtgatgggattttgtatttgtcctttggaaactcctgctagattactgtggagtactagtttcttccgccacaagcttatgctcttctaaaacttagtcaactctcttttttcatacacatccctgctaaaaaagaagaactctgtgctggagtttttgttttcctttttctgtttcgccggaaacatataaataatcttctgtgtgtaaataggcgattttccagatagttgaaaatatgggatctgggcatatatttttcgacccgtcgtcgtgtcacggcaacatgctgttccttgggagcggagatcctgttttccgaggaccaagatcgacgatgatgaagatggaggactcctcgaagaggcgacccttctttagctcgccggaggatctatatgacgaggaatactacgacgagcagtcaccggagaagaagcgccgtctcactcctgagcaggtgcacttgttgg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0236E02-u8qcS/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0236E02.1" temp_strand="+" temp_description="C02HBa0236E02.1  AC215430.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0236E02 sequenced_by:kribb upload_account_name:korea">
        <position start="101342" stop="103144"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="101642" g_stop="102155" g_length="514"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="514" r_length="514" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="102156" i_stop="102705" i_length="550">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="102706" g_stop="102838" g_length="133"/>
          <reference_exon_boundary r_type="cDNA" r_start="515" r_stop="647" r_length="133" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0236E02.1" gen_strand="+" ref_id="SGN-E327132" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>647</cumulative_length_of_scored_exons>
        <coverage percentage="0.974" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0236E02.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E327132" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="101642" e_stop="102155"/>
          <exon e_start="102706" e_stop="102838"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATATATATAGAGACAAAATCACATAATACGCCCTCGCCGGAATCTTATTTTCACTGTCGCCGGCCGTTAAAACTTTTTTTTTCTAGTTCGGAGGTCAAATAATTAACCTCCGATCGGAAGAAGTAGTTATTCTAACTGCTTCTATTTAATCTGAAAACGGGAAAACCCCTGAGCTGGTTAAGGTGGATTTCGTGATGGGATTTTGTATTTGTCCTTTGGAAACTCCTGCTAGATTACTGTGGAGTACTAGTTTCTTCCGCCACAAGCTTATGCTCTTCTAAAACTTAGTCAACTCTCTTTTTTCATACACATCCCTGCTAAAAAAGAAGAACTCTGTGCTGGAGTTTTTGTTTTCCTTTTTCTGTTTCGCCGGAAACATATAAATAATCTTCTGTGTGTAAATAGGCGATTTTCCAGATAGTTGAAAATATGGGATCTGGGCATATATTTTTCGACCCGTCGTCGTGTCACGGCAACATGCTGTTCCTTGGGAGCGGAGATCCTGTTTTCCGAGGTATTCTCTAATCATTATGTTCTCTATTCCAATTACTTATATTACTATGAAAATATAATTTAAGAACTTTTTTGATGACTCAATTCCACTATTAAAATTGAAAGTAAAGTATGTATATGATATGAGTAACACTATCACTAGAAAGTGAAATTCGTCTTGATCTGATTTAATTTTTTTGAATGATGTAAATTTTATTATTCAAATTTACAACCAAAACAAGTATAGAAATATTTTGTCCAAGTTAATTTATTCTGAATCGTACAAGATGAAACGAAGCGGTTAACTTGTAGGGTAACCTGCGATAGATGATTTATAATTTCAGTGTACGAAGAGGTTAAGATATACGTAGATCCTTCGTACATATTTTTATAAGTTGTTTCAGATAGATAGTTTTAAATTCAATTCACTTAGGGTATTGTTTTTATAGATTGATTATCTCTAGTACAGTAAAAATAATGATAAAATTGTAACAACCTTTTTGCATGTAAGTTCTAAGGGTGGCCTTTTATACTATTCTATTTTGAAGCTTGACTTATATTGATTGATACAGGACCAAGATCGACGATGATGAAGATGGAGGACTCCTCGAAGAGGCGACCCTTCTTTAGCTCGCCGGAGGATCTATATGACGAGGAATACTACGACGAGCAGTCACCGGAGAAGAAGCGCCGTCTCACTCCTGA</genome_strand>
        <mrna_strand>ATATATATAGAGACAAAATCACATAATACGCCCTCGCCGGAATCTTATTTTCACTGTCGCCGGCCGTTAAAACTTTTTTTTTCTAGTTCGGAGGTCAAATAATTAACCTCCGATCGGAAGAAGTAGTTATTCTAACTGCTTCTATTTAATCTGAAAACGGGAAAACCCCTGAGCTGGTTAAGGTGGATTTCGTGATGGGATTTTGTATTTGTCCTTTGGAAACTCCTGCTAGATTACTGTGGAGTACTAGTTTCTTCCGCCACAAGCTTATGCTCTTCTAAAACTTAGTCAACTCTCTTTTTTCATACACATCCCTGCTAAAAAAGAAGAACTCTGTGCTGGAGTTTTTGTTTTCCTTTTTCTGTTTCGCCGGAAACATATAAATAATCTTCTGTGTGTAAATAGGCGATTTTCCAGATAGTTGAAAATATGGGATCTGGGCATATATTTTTCGACCCGTCGTCGTGTCACGGCAACATGCTGTTCCTTGGGAGCGGAGATCCTGTTTTCCGAG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GACCAAGATCGACGATGATGAAGATGGAGGACTCCTCGAAGAGGCGACCCTTCTTTAGCTCGCCGGAGGATCTATATGACGAGGAATACTACGACGAGCAGTCACCGGAGAAGAAGCGCCGTCTCACTCCTGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0236E02-u8qcS/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E365775" ref_strand="+" ref_description="SGN-E365775 [cLPT-8-A15]">
      <seq>gacaaaatcacataatacgccctcgccggaatcttattttcactgtcgccggccgttaaaacttcttttttttttctagttcggaggtcaaataattaacctccgatcggaagaagtagttattctaactgcttctatttaatctgaaaacgggaaaacccctgagctgggtaaggtggatttcgtgatgggattttgtatttgtcctttggaaactcctgctagattactgtggagtactagtttcttccgccacaagcttatgctcttctaaaacttagtcaactctcttttttcatacacatccctgctaaaaaagaagaactctgtgctggagtttttgttttcgttttctgtttcgccggaaacatatataaataatcttctgtgtgtaaataggcgattttccagatagttgaaaatatgggatctgggcatatatttttcgacccg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0236E02-u8qcS/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0236E02.1" temp_strand="+" temp_description="C02HBa0236E02.1  AC215430.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0236E02 sequenced_by:kribb upload_account_name:korea">
        <position start="101353" stop="102400"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="101653" g_stop="102100" g_length="448"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="453" r_length="453" r_score="0.967"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0236E02.1" gen_strand="+" ref_id="SGN-E365775" ref_strand="+">
        <total_alignment_score>0.967</total_alignment_score>
        <cumulative_length_of_scored_exons>448</cumulative_length_of_scored_exons>
        <coverage percentage="0.989" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0236E02.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E365775" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="101653" e_stop="102100"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GACAAAATCACATAATACGCCCTCGCCGGAATCTTATTTTCACTGTCGCCGGCCGTTAAAA---C-TTTTTTTTTCTAGTTCGGAGGTCAAATAATTAACCTCCGATCGGAAGAAGTAGTTATTCTAACTGCTTCTATTTAATCTGAAAACGGGAAAACCCCTGAGCTGGTTAAGGTGGATTTCGTGATGGGATTTTGTATTTGTCCTTTGGAAACTCCTGCTAGATTACTGTGGAGTACTAGTTTCTTCCGCCACAAGCTTATGCTCTTCTAAAACTTAGTCAACTCTCTTTTTTCATACACATCCCTGCTAAAAAAGAAGAACTCTGTGCTGGAGTTTTTGTTTTCCTTTTTCTGTTTCGCCGGAAACATAT--AAATAATCTTCTGTGTGTAAATAGGCGATTTTCCAGATAGTTGAAAATATGGGATCTGGGCATATATTTTTCGACCCG</genome_strand>
        <mrna_strand>GACAAAATCACATAATACGCCCTCGCCGGAATCTTATTTTCACTGTCGCCGGCCGTTAAAACTTCTTTTTTTTTTCTAGTTCGGAGGTCAAATAATTAACCTCCGATCGGAAGAAGTAGTTATTCTAACTGCTTCTATTTAATCTGAAAACGGGAAAACCCCTGAGCTGGGTAAGGTGGATTTCGTGATGGGATTTTGTATTTGTCCTTTGGAAACTCCTGCTAGATTACTGTGGAGTACTAGTTTCTTCCGCCACAAGCTTATGCTCTTCTAAAACTTAGTCAACTCTCTTTTTTCATACACATCCCTGCTAAAAAAGAAGAACTCTGTGCTGGAGTTTTTGTTTT-CGTTTTCTGTTTCGCCGGAAACATATATAAATAATCTTCTGTGTGTAAATAGGCGATTTTCCAGATAGTTGAAAATATGGGATCTGGGCATATATTTTTCGACCCG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0236E02-u8qcS/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E438290" ref_strand="+" ref_description="SGN-E438290 [cSTA-7-G20]">
      <seq>cataatacgccctcgccggaatcttattttcactgtcaccggccgttataacttttttttccagttcggaggtcaaataattaaactccgatctgaagaagtagttattctaactgcttctatttaatctgaaaacgggaaaaacccctgagctgggtaaggtggatttcgtgatgggattttgtatttgtcctttggaaactcctgctagattactgtggagtactagtttcttccgccacaagcttatgctcttctaaaactttgtcaactctctttttcatacacatcccctgctaaaaaaagaactctgttctggagtttattttctcttttctgtttcgccggaaacatataaataatcttctgtgggtaaataggcgatcttccagatcattgaaaatatgggatctgggcatatatttttcgacccgtcgtcgtgtcacggcaacatgctgttccttggcaacggagatcctgttttccgaggaccaagatcgacgatgatg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0236E02-u8qcS/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0236E02.1" temp_strand="+" temp_description="C02HBa0236E02.1  AC215430.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0236E02 sequenced_by:kribb upload_account_name:korea">
        <position start="101363" stop="103025"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="101663" g_stop="102155" g_length="493"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="489" r_length="489" r_score="0.945"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="102156" i_stop="102705" i_length="550">
            <donor d_prob="1.000" d_score="0.96"/>
            <acceptor a_prob="1.000" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="102706" g_stop="102725" g_length="20"/>
          <reference_exon_boundary r_type="cDNA" r_start="490" r_stop="509" r_length="20" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0236E02.1" gen_strand="+" ref_id="SGN-E438290" ref_strand="+">
        <total_alignment_score>0.945</total_alignment_score>
        <cumulative_length_of_scored_exons>513</cumulative_length_of_scored_exons>
        <coverage percentage="1.008" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0236E02.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E438290" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="101663" e_stop="102155"/>
          <exon e_start="102706" e_stop="102725"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CATAATACGCCCTCGCCGGAATCTTATTTTCACTGTCGCCGGCCGTTAAAACTTTTTTTTTCTAGTTCGGAGGTCAAATAATTAACCTCCGATCGGAAGAAGTAGTTATTCTAACTGCTTCTATTTAATCTGAAAACGGG-AAAACCCCTGAGCTGGTTAAGGTGGATTTCGTGATGGGATTTTGTATTTGTCCTTTGGAAACTCCTGCTAGATTACTGTGGAGTACTAGTTTCTTCCGCCACAAGCTTATGCTCTTCTAAAACTTAGTCAACTCTCTTTTTTCATACACAT-CCCTGCTAAAAAAGAAGAACTCTGTGCTGGAGTTTTTGTTTTCCTTTTTCTGTTTCGCCGGAAACATATAAATAATCTTCTGTGTGTAAATAGGCGATTTTCCAGATAGTTGAAAATATGGGATCTGGGCATATATTTTTCGACCCGTCGTCGTGTCACGGCAACATGCTGTTCCTTGGGAGCGGAGATCCTGTTTTCCGAGGTATTCTCTAATCATTATGTTCTCTATTCCAATTACTTATATTACTATGAAAATATAATTTAAGAACTTTTTTGATGACTCAATTCCACTATTAAAATTGAAAGTAAAGTATGTATATGATATGAGTAACACTATCACTAGAAAGTGAAATTCGTCTTGATCTGATTTAATTTTTTTGAATGATGTAAATTTTATTATTCAAATTTACAACCAAAACAAGTATAGAAATATTTTGTCCAAGTTAATTTATTCTGAATCGTACAAGATGAAACGAAGCGGTTAACTTGTAGGGTAACCTGCGATAGATGATTTATAATTTCAGTGTACGAAGAGGTTAAGATATACGTAGATCCTTCGTACATATTTTTATAAGTTGTTTCAGATAGATAGTTTTAAATTCAATTCACTTAGGGTATTGTTTTTATAGATTGATTATCTCTAGTACAGTAAAAATAATGATAAAATTGTAACAACCTTTTTGCATGTAAGTTCTAAGGGTGGCCTTTTATACTATTCTATTTTGAAGCTTGACTTATATTGATTGATACAGGACCAAGATCGACGATGATG</genome_strand>
        <mrna_strand>CATAATACGCCCTCGCCGGAATCTTATTTTCACTGTCACCGGCCGTTATAAC-TTTTTTTTCCAGTTCGGAGGTCAAATAATTAAACTCCGATCTGAAGAAGTAGTTATTCTAACTGCTTCTATTTAATCTGAAAACGGGAAAAACCCCTGAGCTGGGTAAGGTGGATTTCGTGATGGGATTTTGTATTTGTCCTTTGGAAACTCCTGCTAGATTACTGTGGAGTACTAGTTTCTTCCGCCACAAGCTTATGCTCTTCTAAAACTTTGTCAACTCTC-TTTTTCATACACATCCCCTGCT-AAAAA-AAGAACTCTGTTCTGGAG--TTTATTTTCTCTTTTCTGTTTCGCCGGAAACATATAAATAATCTTCTGTGGGTAAATAGGCGATCTTCCAGATCATTGAAAATATGGGATCTGGGCATATATTTTTCGACCCGTCGTCGTGTCACGGCAACATGCTGTTCCTTGGCAACGGAGATCCTGTTTTCCGAG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GACCAAGATCGACGATGATG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0236E02-u8qcS/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E453460" ref_strand="+" ref_description="SGN-E453460 [cSTS-20-G7]">
      <seq>tacctccctcgccggaatcttactttcacctgtcaccggcccgttataacctttttttttccagttcggaggtcaaataattaaactccgatctgaagaagtagttattctaactgcttctatttaatctgaaaacgggaaaaacccctgaactgggtaaggtggatttcgtgatgggattttgtatttgtcctttggaaactcctgctagattactgtggagtactagtttcttccgccacaagcttatgctcttctaaaactttgtcaactctctttttcatacacatcccctgctaaaaaaagaactctgttctggagtttattttctcttttctgtttcgccggaaacatataaataatcttctgtgggtaaataggcgatcttccagatcattgaaaatatgggatctgggcatatattttttgacccgtcgtcgtgtcacggcaacatgctgttccttggcaatggagatcctgttttccgaggaccaagatcgacaatgatgaagatggaggactcctcgaagaggcgacccttctttagctaccgggangatctatatgacgaggaatactacgatgagcagtcaccgggagaagaagcgccgtctcactcctg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0236E02-u8qcS/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0236E02.1" temp_strand="+" temp_description="C02HBa0236E02.1  AC215430.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0236E02 sequenced_by:kribb upload_account_name:korea">
        <position start="101368" stop="103137"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="101668" g_stop="102155" g_length="488"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="489" r_length="489" r_score="0.920"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="102156" i_stop="102705" i_length="550">
            <donor d_prob="1.000" d_score="0.94"/>
            <acceptor a_prob="1.000" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="102706" g_stop="102837" g_length="132"/>
          <reference_exon_boundary r_type="cDNA" r_start="490" r_stop="622" r_length="133" r_score="0.939"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0236E02.1" gen_strand="+" ref_id="SGN-E453460" ref_strand="+">
        <total_alignment_score>0.924</total_alignment_score>
        <cumulative_length_of_scored_exons>620</cumulative_length_of_scored_exons>
        <coverage percentage="0.997" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0236E02.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E453460" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="101668" e_stop="102155"/>
          <exon e_start="102706" e_stop="102837"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TA-CGCCCTCGCCGGAATCTTATTTTCA-CTGTCGCCGG-CCGTTA-AAACTTTTTTTTTCTAGTTCGGAGGTCAAATAATTAACCTCCGATCGGAAGAAGTAGTTATTCTAACTGCTTCTATTTAATCTGAAAACGGG-AAAACCCCTGAGCTGGTTAAGGTGGATTTCGTGATGGGATTTTGTATTTGTCCTTTGGAAACTCCTGCTAGATTACTGTGGAGTACTAGTTTCTTCCGCCACAAGCTTATGCTCTTCTAAAACTTAGTCAACTCTCTTTTTTCATACACAT-CCCTGCTAAAAAAGAAGAACTCTGTGCTGGAGTTTTTGTTTTCCTTTTTCTGTTTCGCCGGAAACATATAAATAATCTTCTGTGTGTAAATAGGCGATTTTCCAGATAGTTGAAAATATGGGATCTGGGCATATATTTTTCGACCCGTCGTCGTGTCACGGCAACATGCTGTTCCTTGGGAGCGGAGATCCTGTTTTCCGAGGTATTCTCTAATCATTATGTTCTCTATTCCAATTACTTATATTACTATGAAAATATAATTTAAGAACTTTTTTGATGACTCAATTCCACTATTAAAATTGAAAGTAAAGTATGTATATGATATGAGTAACACTATCACTAGAAAGTGAAATTCGTCTTGATCTGATTTAATTTTTTTGAATGATGTAAATTTTATTATTCAAATTTACAACCAAAACAAGTATAGAAATATTTTGTCCAAGTTAATTTATTCTGAATCGTACAAGATGAAACGAAGCGGTTAACTTGTAGGGTAACCTGCGATAGATGATTTATAATTTCAGTGTACGAAGAGGTTAAGATATACGTAGATCCTTCGTACATATTTTTATAAGTTGTTTCAGATAGATAGTTTTAAATTCAATTCACTTAGGGTATTGTTTTTATAGATTGATTATCTCTAGTACAGTAAAAATAATGATAAAATTGTAACAACCTTTTTGCATGTAAGTTCTAAGGGTGGCCTTTTATACTATTCTATTTTGAAGCTTGACTTATATTGATTGATACAGGACCAAGATCGACGATGATGAAGATGGAGGACTCCTCGAAGAGGCGACCCTTCTTTAGCTCGCCGGAGGATCTATATGACGAGGAATACTACGACGAGCAGTCACC-GGAGAAGAAGCGCCGTCTCACTCCTG</genome_strand>
        <mrna_strand>TACCTCCCTCGCCGGAATCTTACTTTCACCTGTCACCGGCCCGTTATAACCTTTTTTTTTCCAGTTCGGAGGTCAAATAATTAAACTCCGATCTGAAGAAGTAGTTATTCTAACTGCTTCTATTTAATCTGAAAACGGGAAAAACCCCTGAACTGGGTAAGGTGGATTTCGTGATGGGATTTTGTATTTGTCCTTTGGAAACTCCTGCTAGATTACTGTGGAGTACTAGTTTCTTCCGCCACAAGCTTATGCTCTTCTAAAACTTTGTCAACTCTC-TTTTTCATACACATCCCCTGCT-AAAAA-AAGAACTCTGTTCTGGAG--TTTATTTTCTCTTTTCTGTTTCGCCGGAAACATATAAATAATCTTCTGTGGGTAAATAGGCGATCTTCCAGATCATTGAAAATATGGGATCTGGGCATATATTTTTTGACCCGTCGTCGTGTCACGGCAACATGCTGTTCCTTGGCAATGGAGATCCTGTTTTCCGAG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GACCAAGATCGACAATGATGAAGATGGAGGACTCCTCGAAGAGGCGACCCTTCTTTAGCTACCGGGANGATCTATATGACGAGGAATACTACGATGAGCAGTCACCGGGAGAAGAAGCGCCGTCTCACTCCTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0236E02-u8qcS/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E724262" ref_strand="+" ref_description="SGN-E724262 [FC23CC09]">
      <seq>cggaatcttattttcactgtcgccggccgttaaaactttttttttctagttcggaggtcaaataattaacctccgatcggaagaagtagttattctaactgcttctatttaatctgaaaacgggaaaacccctgagctggttaagggggatttcgtgatgggattttgtatttgtcctttggaaactcctgctagattactgtggagtactagtttcttccgccacaagcttatgctcttctaaaacttaatcaactctcttttttcatacacctccctgctaaaaaaaaagaactctgtgctggagtttttgttttcctttttctgtttcgccggaaacatataaat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0236E02-u8qcS/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0236E02.1" temp_strand="+" temp_description="C02HBa0236E02.1  AC215430.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0236E02 sequenced_by:kribb upload_account_name:korea">
        <position start="101379" stop="102326"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="101679" g_stop="102026" g_length="348"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="348" r_length="348" r_score="0.989"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0236E02.1" gen_strand="+" ref_id="SGN-E724262" ref_strand="+">
        <total_alignment_score>0.989</total_alignment_score>
        <cumulative_length_of_scored_exons>348</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0236E02.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E724262" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="101679" e_stop="102026"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CGGAATCTTATTTTCACTGTCGCCGGCCGTTAAAACTTTTTTTTTCTAGTTCGGAGGTCAAATAATTAACCTCCGATCGGAAGAAGTAGTTATTCTAACTGCTTCTATTTAATCTGAAAACGGGAAAACCCCTGAGCTGGTTAAGGTGGATTTCGTGATGGGATTTTGTATTTGTCCTTTGGAAACTCCTGCTAGATTACTGTGGAGTACTAGTTTCTTCCGCCACAAGCTTATGCTCTTCTAAAACTTAGTCAACTCTCTTTTTTCATACACATCCCTGCTAAAAAAGAAGAACTCTGTGCTGGAGTTTTTGTTTTCCTTTTTCTGTTTCGCCGGAAACATATAAAT</genome_strand>
        <mrna_strand>CGGAATCTTATTTTCACTGTCGCCGGCCGTTAAAACTTTTTTTTTCTAGTTCGGAGGTCAAATAATTAACCTCCGATCGGAAGAAGTAGTTATTCTAACTGCTTCTATTTAATCTGAAAACGGGAAAACCCCTGAGCTGGTTAAGGGGGATTTCGTGATGGGATTTTGTATTTGTCCTTTGGAAACTCCTGCTAGATTACTGTGGAGTACTAGTTTCTTCCGCCACAAGCTTATGCTCTTCTAAAACTTAATCAACTCTCTTTTTTCATACACCTCCCTGCTAAAAAAAAAGAACTCTGTGCTGGAGTTTTTGTTTTCCTTTTTCTGTTTCGCCGGAAACATATAAAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0236E02-u8qcS/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E735960" ref_strand="+" ref_description="SGN-E735960 [LC03DD05]">
      <seq>cgcttattttgcctgtcgccggccgataaaactttttttttctgatccggaggtcgaataattaacctccgatcggaagaagtagttattcaaacggcttctatttaatctgagaaacgggaaaacccctgatctggtgaaggtggatttcgcggtgggattttgtatttgtcctttggaaactcctgctagattactgaggagtactagtttcttccgccacaagcttatgctcttctaaaacttagtcaagtctcttttttcatacagatccctgctaaaaaagaagaactctgtgctggagtttttgttttcctttttctgtttcgccggagacatataaataatcttctgtgtgtaaataggcgattttccagatagttgaaaatatgggatctgggcatatatttttcgacccgtcgtcgtgtcacggcaacatgctgttccttgggagcggagatcctgttttccgaggaccaagatcgacgatgatgaagatggaggactcctcgaagaggcgacccttctttagctcgccggaggatctatatgacgaggaatactacgacgagcagtcaccggagaagaagcgccgtctcactcctgagcaggtgcacttgttggagaagagctttgagacagaaaacaagctggagcccgagcgcaaaacccagctggccaaaaagctggggctgcagcccagacaggtggctgtatggttccaaaaccgccgtgcccggtggaagaccaagcagctccagaggggattatgatcagctcaaatcctcttatgactcccttctctctgattttgactccg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0236E02-u8qcS/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0236E02.1" temp_strand="+" temp_description="C02HBa0236E02.1  AC215430.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0236E02 sequenced_by:kribb upload_account_name:korea">
        <position start="101385" stop="103798"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="101683" g_stop="102155" g_length="473"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="474" r_length="474" r_score="0.956"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="102156" i_stop="102705" i_length="550">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="102706" g_stop="102842" g_length="137"/>
          <reference_exon_boundary r_type="cDNA" r_start="475" r_stop="611" r_length="137" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="102843" i_stop="103290" i_length="448">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.784" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="103291" g_stop="103498" g_length="208"/>
          <reference_exon_boundary r_type="cDNA" r_start="612" r_stop="820" r_length="209" r_score="0.986"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0236E02.1" gen_strand="+" ref_id="SGN-E735960" ref_strand="+">
        <total_alignment_score>0.971</total_alignment_score>
        <cumulative_length_of_scored_exons>818</cumulative_length_of_scored_exons>
        <coverage percentage="0.998" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0236E02.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E735960" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="101683" e_stop="102155"/>
          <exon e_start="102706" e_stop="102842"/>
          <exon e_start="103291" e_stop="103498"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATCTTATTTTCACTGTCGCCGGCCGTTAAAACTTTTTTTTTCTAGTTCGGAGGTCAAATAATTAACCTCCGATCGGAAGAAGTAGTTATTCTAACTGCTTCTATTTAATCTGA-AAACGGGAAAACCCCTGAGCTGGTTAAGGTGGATTTCGTGATGGGATTTTGTATTTGTCCTTTGGAAACTCCTGCTAGATTACTGTGGAGTACTAGTTTCTTCCGCCACAAGCTTATGCTCTTCTAAAACTTAGTCAACTCTCTTTTTTCATACACATCCCTGCTAAAAAAGAAGAACTCTGTGCTGGAGTTTTTGTTTTCCTTTTTCTGTTTCGCCGGAAACATATAAATAATCTTCTGTGTGTAAATAGGCGATTTTCCAGATAGTTGAAAATATGGGATCTGGGCATATATTTTTCGACCCGTCGTCGTGTCACGGCAACATGCTGTTCCTTGGGAGCGGAGATCCTGTTTTCCGAGGTATTCTCTAATCATTATGTTCTCTATTCCAATTACTTATATTACTATGAAAATATAATTTAAGAACTTTTTTGATGACTCAATTCCACTATTAAAATTGAAAGTAAAGTATGTATATGATATGAGTAACACTATCACTAGAAAGTGAAATTCGTCTTGATCTGATTTAATTTTTTTGAATGATGTAAATTTTATTATTCAAATTTACAACCAAAACAAGTATAGAAATATTTTGTCCAAGTTAATTTATTCTGAATCGTACAAGATGAAACGAAGCGGTTAACTTGTAGGGTAACCTGCGATAGATGATTTATAATTTCAGTGTACGAAGAGGTTAAGATATACGTAGATCCTTCGTACATATTTTTATAAGTTGTTTCAGATAGATAGTTTTAAATTCAATTCACTTAGGGTATTGTTTTTATAGATTGATTATCTCTAGTACAGTAAAAATAATGATAAAATTGTAACAACCTTTTTGCATGTAAGTTCTAAGGGTGGCCTTTTATACTATTCTATTTTGAAGCTTGACTTATATTGATTGATACAGGACCAAGATCGACGATGATGAAGATGGAGGACTCCTCGAAGAGGCGACCCTTCTTTAGCTCGCCGGAGGATCTATATGACGAGGAATACTACGACGAGCAGTCACCGGAGAAGAAGCGCCGTCTCACTCCTGAGCAGGTTAGCATCCTGTTCCTCCTTTATCTACCCAAAAATATAAATTAAGTAAATGCGTTTTTTTAATAGTTCGATGGAGTAGTTATCAATTCAACATACTGTGACATATATCTCCTAGCTATCAAGATAGTTAAATTTTTTGGTTCAAATCTCACCATCACATATTTTTGGCAATTGGCCACTACATGTGAAACGATTTGTTTAGTCAAATTATAATTAAGTAACTAAAGAAGATTCCCTCTAAAGTGATTTAAGTTTTTAATTATATTGGAACATATTCACCACTATAGCATCAAATTCTTCACAATATCTACCTTTAAACCCTGAAAAGAAGAGAATTTCTTTTTTATCAACGAGCGTTTTCTTTAAGCAAAATTTTATAATTTTGTGGGATTCGATTACTTGCTGAGCAATAAGTGCATGTCCTGCGTTGTTGGGTACGTAAATGAAGGTGCACTTGTTGGAGAAGAGCTTTGAGACAGAAAACAAGCTGGAGCCCGAGCGCAAAACCCAGCTGGCCAAAAAGCTGGGGCTGCAGCCCAGACAGGTGGCTGTATGGTTCCAAAACCGCCGTGCCCGGTGGAAGACCAAGCAGCTCGAGA-GGGATTATGATCAGCTCAAATCCTCTTATGACTCCCTTCTCTCTGATTTTGACTCCG</genome_strand>
        <mrna_strand>CGCTTATTTTGCCTGTCGCCGGCCGATAAAACTTTTTTTTTCTGATCCGGAGGTCGAATAATTAACCTCCGATCGGAAGAAGTAGTTATTCAAACGGCTTCTATTTAATCTGAGAAACGGGAAAACCCCTGATCTGGTGAAGGTGGATTTCGCGGTGGGATTTTGTATTTGTCCTTTGGAAACTCCTGCTAGATTACTGAGGAGTACTAGTTTCTTCCGCCACAAGCTTATGCTCTTCTAAAACTTAGTCAAGTCTCTTTTTTCATACAGATCCCTGCTAAAAAAGAAGAACTCTGTGCTGGAGTTTTTGTTTTCCTTTTTCTGTTTCGCCGGAGACATATAAATAATCTTCTGTGTGTAAATAGGCGATTTTCCAGATAGTTGAAAATATGGGATCTGGGCATATATTTTTCGACCCGTCGTCGTGTCACGGCAACATGCTGTTCCTTGGGAGCGGAGATCCTGTTTTCCGAG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GACCAAGATCGACGATGATGAAGATGGAGGACTCCTCGAAGAGGCGACCCTTCTTTAGCTCGCCGGAGGATCTATATGACGAGGAATACTACGACGAGCAGTCACCGGAGAAGAAGCGCCGTCTCACTCCTGAGCAG................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGCACTTGTTGGAGAAGAGCTTTGAGACAGAAAACAAGCTGGAGCCCGAGCGCAAAACCCAGCTGGCCAAAAAGCTGGGGCTGCAGCCCAGACAGGTGGCTGTATGGTTCCAAAACCGCCGTGCCCGGTGGAAGACCAAGCAGCTCCAGAGGGGATTATGATCAGCTCAAATCCTCTTATGACTCCCTTCTCTCTGATTTTGACTCCG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0236E02-u8qcS/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E736423" ref_strand="+" ref_description="SGN-E736423 [LC05CH06]">
      <seq>ccttattttcactgtcgccggccgttaaaactttttttttctagttcggaggtcaaataattaacctccgatcggaagaagtagttattctaactgcttctatttaatctgaaaacgggaaaacccctgagctggttaaggtggatttcgtgatgggattttgtatttgtcctttggaaactcctgctagattactgtggagtactagtttcttccgccacaagcttatgctcttctaaaacttagtcaactctcttttttcatacacatccctgctaaaaaagaagaactctgtgctggagtttttgttttcctttttctgtttcgccggaaacatataaataatcttctgtgtgtaaataggcgattttccagatagttgaaaatatgggatctgggcatatatttttcgacccgtcgtcgtgtcacggcaacatgctgttccttgggagcggagatcctgttttccgaggaccaagatcgacgatgatgaagatggaggactcctcgaagaggcgacccttctttagctcgccggaggatctatatgacgaggaatactacgacgagcagtcaccggagaagaagcgccgtctcactcctgagcaggtgcacttgttggagaagagctttgagacagaaaacaagctggagcccgagcgcaaaacccagctggccaaaaagctggggctgcagcccagacaggtggctgtatggttccaaaaccgccgtgcccggtggaagaccaagcagctcgagagggattatgatcagctcaaatcctcttatgactcccttctctctgattttgactccgttcgcaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0236E02-u8qcS/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0236E02.1" temp_strand="+" temp_description="C02HBa0236E02.1  AC215430.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0236E02 sequenced_by:kribb upload_account_name:korea">
        <position start="101385" stop="103805"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="101684" g_stop="102155" g_length="472"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="472" r_length="472" r_score="0.998"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="102156" i_stop="102705" i_length="550">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="102706" g_stop="102842" g_length="137"/>
          <reference_exon_boundary r_type="cDNA" r_start="473" r_stop="609" r_length="137" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="102843" i_stop="103290" i_length="448">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.784" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="103291" g_stop="103505" g_length="215"/>
          <reference_exon_boundary r_type="cDNA" r_start="610" r_stop="824" r_length="215" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0236E02.1" gen_strand="+" ref_id="SGN-E736423" ref_strand="+">
        <total_alignment_score>0.999</total_alignment_score>
        <cumulative_length_of_scored_exons>824</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0236E02.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E736423" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="101684" e_stop="102155"/>
          <exon e_start="102706" e_stop="102842"/>
          <exon e_start="103291" e_stop="103505"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCTTATTTTCACTGTCGCCGGCCGTTAAAACTTTTTTTTTCTAGTTCGGAGGTCAAATAATTAACCTCCGATCGGAAGAAGTAGTTATTCTAACTGCTTCTATTTAATCTGAAAACGGGAAAACCCCTGAGCTGGTTAAGGTGGATTTCGTGATGGGATTTTGTATTTGTCCTTTGGAAACTCCTGCTAGATTACTGTGGAGTACTAGTTTCTTCCGCCACAAGCTTATGCTCTTCTAAAACTTAGTCAACTCTCTTTTTTCATACACATCCCTGCTAAAAAAGAAGAACTCTGTGCTGGAGTTTTTGTTTTCCTTTTTCTGTTTCGCCGGAAACATATAAATAATCTTCTGTGTGTAAATAGGCGATTTTCCAGATAGTTGAAAATATGGGATCTGGGCATATATTTTTCGACCCGTCGTCGTGTCACGGCAACATGCTGTTCCTTGGGAGCGGAGATCCTGTTTTCCGAGGTATTCTCTAATCATTATGTTCTCTATTCCAATTACTTATATTACTATGAAAATATAATTTAAGAACTTTTTTGATGACTCAATTCCACTATTAAAATTGAAAGTAAAGTATGTATATGATATGAGTAACACTATCACTAGAAAGTGAAATTCGTCTTGATCTGATTTAATTTTTTTGAATGATGTAAATTTTATTATTCAAATTTACAACCAAAACAAGTATAGAAATATTTTGTCCAAGTTAATTTATTCTGAATCGTACAAGATGAAACGAAGCGGTTAACTTGTAGGGTAACCTGCGATAGATGATTTATAATTTCAGTGTACGAAGAGGTTAAGATATACGTAGATCCTTCGTACATATTTTTATAAGTTGTTTCAGATAGATAGTTTTAAATTCAATTCACTTAGGGTATTGTTTTTATAGATTGATTATCTCTAGTACAGTAAAAATAATGATAAAATTGTAACAACCTTTTTGCATGTAAGTTCTAAGGGTGGCCTTTTATACTATTCTATTTTGAAGCTTGACTTATATTGATTGATACAGGACCAAGATCGACGATGATGAAGATGGAGGACTCCTCGAAGAGGCGACCCTTCTTTAGCTCGCCGGAGGATCTATATGACGAGGAATACTACGACGAGCAGTCACCGGAGAAGAAGCGCCGTCTCACTCCTGAGCAGGTTAGCATCCTGTTCCTCCTTTATCTACCCAAAAATATAAATTAAGTAAATGCGTTTTTTTAATAGTTCGATGGAGTAGTTATCAATTCAACATACTGTGACATATATCTCCTAGCTATCAAGATAGTTAAATTTTTTGGTTCAAATCTCACCATCACATATTTTTGGCAATTGGCCACTACATGTGAAACGATTTGTTTAGTCAAATTATAATTAAGTAACTAAAGAAGATTCCCTCTAAAGTGATTTAAGTTTTTAATTATATTGGAACATATTCACCACTATAGCATCAAATTCTTCACAATATCTACCTTTAAACCCTGAAAAGAAGAGAATTTCTTTTTTATCAACGAGCGTTTTCTTTAAGCAAAATTTTATAATTTTGTGGGATTCGATTACTTGCTGAGCAATAAGTGCATGTCCTGCGTTGTTGGGTACGTAAATGAAGGTGCACTTGTTGGAGAAGAGCTTTGAGACAGAAAACAAGCTGGAGCCCGAGCGCAAAACCCAGCTGGCCAAAAAGCTGGGGCTGCAGCCCAGACAGGTGGCTGTATGGTTCCAAAACCGCCGTGCCCGGTGGAAGACCAAGCAGCTCGAGAGGGATTATGATCAGCTCAAATCCTCTTATGACTCCCTTCTCTCTGATTTTGACTCCGTTCGCAA</genome_strand>
        <mrna_strand>CCTTATTTTCACTGTCGCCGGCCGTTAAAACTTTTTTTTTCTAGTTCGGAGGTCAAATAATTAACCTCCGATCGGAAGAAGTAGTTATTCTAACTGCTTCTATTTAATCTGAAAACGGGAAAACCCCTGAGCTGGTTAAGGTGGATTTCGTGATGGGATTTTGTATTTGTCCTTTGGAAACTCCTGCTAGATTACTGTGGAGTACTAGTTTCTTCCGCCACAAGCTTATGCTCTTCTAAAACTTAGTCAACTCTCTTTTTTCATACACATCCCTGCTAAAAAAGAAGAACTCTGTGCTGGAGTTTTTGTTTTCCTTTTTCTGTTTCGCCGGAAACATATAAATAATCTTCTGTGTGTAAATAGGCGATTTTCCAGATAGTTGAAAATATGGGATCTGGGCATATATTTTTCGACCCGTCGTCGTGTCACGGCAACATGCTGTTCCTTGGGAGCGGAGATCCTGTTTTCCGAG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GACCAAGATCGACGATGATGAAGATGGAGGACTCCTCGAAGAGGCGACCCTTCTTTAGCTCGCCGGAGGATCTATATGACGAGGAATACTACGACGAGCAGTCACCGGAGAAGAAGCGCCGTCTCACTCCTGAGCAG................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGCACTTGTTGGAGAAGAGCTTTGAGACAGAAAACAAGCTGGAGCCCGAGCGCAAAACCCAGCTGGCCAAAAAGCTGGGGCTGCAGCCCAGACAGGTGGCTGTATGGTTCCAAAACCGCCGTGCCCGGTGGAAGACCAAGCAGCTCGAGAGGGATTATGATCAGCTCAAATCCTCTTATGACTCCCTTCTCTCTGATTTTGACTCCGTTCGCAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0236E02-u8qcS/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E726372" ref_strand="+" ref_description="SGN-E726372 [LA11CE07]">
      <seq>cttattttcactgtcgccggccgttaaaactttttttttctagttcggaggtcaaataattaacctccgatcggaagaagtagttattctaactgcttctatttaatctgaaaacgggaaaacccctgagctggttaaggtggatttcgtgatgggattttgtatttgtcctttggaaactcctgctagattactgtggagtactagtttcttccgccacaagcttatgctcttctaaaacttagtcaactctcttttttcatacacatccctgctaaaaaagaagaactctgtgctggagtttttgttttcctttttctgtttcgccggaaacatataaataatcttctgtgtgtaaataggcgattttccagatagttgaaaatatgggatctgggcatatatttttcgacccgtcgtcgtgtcacggcaacatgctgttccttgggagcggagatcctgttttccgaggaccaagatcgacgatgatgaagatggaggactcctcgaagaggcgacccttctttagctcgccggaggatctatatgacgaggaatactacgacgagcagtcaccggagaagaagcgccgtctcactcctgagcaggtgcacttgttggagaagagctttgagacagaaaacaagctggagcccgagcgcaaaacccagctggccaaaaagctggggctgcagcccagacaggtggctgtatggttccaaaaccgccgtgcccggtggaagaccaagcagctcgagagggattatgatcagctcaaatcctcttatgactcccttctctctgattttgactccgttcgcaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0236E02-u8qcS/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0236E02.1" temp_strand="+" temp_description="C02HBa0236E02.1  AC215430.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0236E02 sequenced_by:kribb upload_account_name:korea">
        <position start="101385" stop="103805"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="101685" g_stop="102155" g_length="471"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="471" r_length="471" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="102156" i_stop="102705" i_length="550">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="102706" g_stop="102842" g_length="137"/>
          <reference_exon_boundary r_type="cDNA" r_start="472" r_stop="608" r_length="137" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="102843" i_stop="103290" i_length="448">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.784" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="103291" g_stop="103505" g_length="215"/>
          <reference_exon_boundary r_type="cDNA" r_start="609" r_stop="823" r_length="215" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0236E02.1" gen_strand="+" ref_id="SGN-E726372" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>823</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0236E02.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E726372" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="101685" e_stop="102155"/>
          <exon e_start="102706" e_stop="102842"/>
          <exon e_start="103291" e_stop="103505"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTTATTTTCACTGTCGCCGGCCGTTAAAACTTTTTTTTTCTAGTTCGGAGGTCAAATAATTAACCTCCGATCGGAAGAAGTAGTTATTCTAACTGCTTCTATTTAATCTGAAAACGGGAAAACCCCTGAGCTGGTTAAGGTGGATTTCGTGATGGGATTTTGTATTTGTCCTTTGGAAACTCCTGCTAGATTACTGTGGAGTACTAGTTTCTTCCGCCACAAGCTTATGCTCTTCTAAAACTTAGTCAACTCTCTTTTTTCATACACATCCCTGCTAAAAAAGAAGAACTCTGTGCTGGAGTTTTTGTTTTCCTTTTTCTGTTTCGCCGGAAACATATAAATAATCTTCTGTGTGTAAATAGGCGATTTTCCAGATAGTTGAAAATATGGGATCTGGGCATATATTTTTCGACCCGTCGTCGTGTCACGGCAACATGCTGTTCCTTGGGAGCGGAGATCCTGTTTTCCGAGGTATTCTCTAATCATTATGTTCTCTATTCCAATTACTTATATTACTATGAAAATATAATTTAAGAACTTTTTTGATGACTCAATTCCACTATTAAAATTGAAAGTAAAGTATGTATATGATATGAGTAACACTATCACTAGAAAGTGAAATTCGTCTTGATCTGATTTAATTTTTTTGAATGATGTAAATTTTATTATTCAAATTTACAACCAAAACAAGTATAGAAATATTTTGTCCAAGTTAATTTATTCTGAATCGTACAAGATGAAACGAAGCGGTTAACTTGTAGGGTAACCTGCGATAGATGATTTATAATTTCAGTGTACGAAGAGGTTAAGATATACGTAGATCCTTCGTACATATTTTTATAAGTTGTTTCAGATAGATAGTTTTAAATTCAATTCACTTAGGGTATTGTTTTTATAGATTGATTATCTCTAGTACAGTAAAAATAATGATAAAATTGTAACAACCTTTTTGCATGTAAGTTCTAAGGGTGGCCTTTTATACTATTCTATTTTGAAGCTTGACTTATATTGATTGATACAGGACCAAGATCGACGATGATGAAGATGGAGGACTCCTCGAAGAGGCGACCCTTCTTTAGCTCGCCGGAGGATCTATATGACGAGGAATACTACGACGAGCAGTCACCGGAGAAGAAGCGCCGTCTCACTCCTGAGCAGGTTAGCATCCTGTTCCTCCTTTATCTACCCAAAAATATAAATTAAGTAAATGCGTTTTTTTAATAGTTCGATGGAGTAGTTATCAATTCAACATACTGTGACATATATCTCCTAGCTATCAAGATAGTTAAATTTTTTGGTTCAAATCTCACCATCACATATTTTTGGCAATTGGCCACTACATGTGAAACGATTTGTTTAGTCAAATTATAATTAAGTAACTAAAGAAGATTCCCTCTAAAGTGATTTAAGTTTTTAATTATATTGGAACATATTCACCACTATAGCATCAAATTCTTCACAATATCTACCTTTAAACCCTGAAAAGAAGAGAATTTCTTTTTTATCAACGAGCGTTTTCTTTAAGCAAAATTTTATAATTTTGTGGGATTCGATTACTTGCTGAGCAATAAGTGCATGTCCTGCGTTGTTGGGTACGTAAATGAAGGTGCACTTGTTGGAGAAGAGCTTTGAGACAGAAAACAAGCTGGAGCCCGAGCGCAAAACCCAGCTGGCCAAAAAGCTGGGGCTGCAGCCCAGACAGGTGGCTGTATGGTTCCAAAACCGCCGTGCCCGGTGGAAGACCAAGCAGCTCGAGAGGGATTATGATCAGCTCAAATCCTCTTATGACTCCCTTCTCTCTGATTTTGACTCCGTTCGCAA</genome_strand>
        <mrna_strand>CTTATTTTCACTGTCGCCGGCCGTTAAAACTTTTTTTTTCTAGTTCGGAGGTCAAATAATTAACCTCCGATCGGAAGAAGTAGTTATTCTAACTGCTTCTATTTAATCTGAAAACGGGAAAACCCCTGAGCTGGTTAAGGTGGATTTCGTGATGGGATTTTGTATTTGTCCTTTGGAAACTCCTGCTAGATTACTGTGGAGTACTAGTTTCTTCCGCCACAAGCTTATGCTCTTCTAAAACTTAGTCAACTCTCTTTTTTCATACACATCCCTGCTAAAAAAGAAGAACTCTGTGCTGGAGTTTTTGTTTTCCTTTTTCTGTTTCGCCGGAAACATATAAATAATCTTCTGTGTGTAAATAGGCGATTTTCCAGATAGTTGAAAATATGGGATCTGGGCATATATTTTTCGACCCGTCGTCGTGTCACGGCAACATGCTGTTCCTTGGGAGCGGAGATCCTGTTTTCCGAG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GACCAAGATCGACGATGATGAAGATGGAGGACTCCTCGAAGAGGCGACCCTTCTTTAGCTCGCCGGAGGATCTATATGACGAGGAATACTACGACGAGCAGTCACCGGAGAAGAAGCGCCGTCTCACTCCTGAGCAG................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGCACTTGTTGGAGAAGAGCTTTGAGACAGAAAACAAGCTGGAGCCCGAGCGCAAAACCCAGCTGGCCAAAAAGCTGGGGCTGCAGCCCAGACAGGTGGCTGTATGGTTCCAAAACCGCCGTGCCCGGTGGAAGACCAAGCAGCTCGAGAGGGATTATGATCAGCTCAAATCCTCTTATGACTCCCTTCTCTCTGATTTTGACTCCGTTCGCAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0236E02-u8qcS/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E718572" ref_strand="+" ref_description="SGN-E718572 [FC05AC04]">
      <seq>tattttcactgtcgccggccgttaaaactttttttttctagttcggaggtcaaataattaacctccgatcggaagaagtagttattctaactgcttctatttaatctgaaaacgggaaaacccctgagctggttaaggtggatttcgtgatgggattttgtatttgtcctttggaaactcctgctagattactgtggagtactagtttcttccgccacaagcttatgctcttctaaaacttagtcaactctcttttttcatacacatccctgctaaaaaagaaaaactctgtgctggagtttttgttttcctttttctgtttcgccggaaacatataaataatcttctgtgtgtaaataggcgattttccagatagttgaaaatatgggatctgggcatatatttttcgacccgtcgtcgtgtcacggcaacatgctgttccttgggagcggagatcctgttttccgaggaccaagatcgacgatgatgaagatggaggactcctcgaagaggcgacccttctttagctcgccggaggatctatatgacgaggaatactacgacgagcagtcaccggagaagaagcgccgtctcactcctgagcaggttgtttcattgatggaaaagttacaggggaaagtggttggaggagcagggggaaatgaaaaatctgacatcttggaggtggatgctatgacgatccttcaagt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0236E02-u8qcS/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0236E02.1" temp_strand="+" temp_description="C02HBa0236E02.1  AC215430.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0236E02 sequenced_by:kribb upload_account_name:korea">
        <position start="101387" stop="105064"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="101687" g_stop="102155" g_length="469"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="469" r_length="469" r_score="0.998"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="102156" i_stop="102705" i_length="550">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="102706" g_stop="102842" g_length="137"/>
          <reference_exon_boundary r_type="cDNA" r_start="470" r_stop="606" r_length="137" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="102843" i_stop="104660" i_length="1818">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="104661" g_stop="104764" g_length="104"/>
          <reference_exon_boundary r_type="cDNA" r_start="607" r_stop="710" r_length="104" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0236E02.1" gen_strand="+" ref_id="SGN-E718572" ref_strand="+">
        <total_alignment_score>0.999</total_alignment_score>
        <cumulative_length_of_scored_exons>710</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0236E02.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E718572" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="101687" e_stop="102155"/>
          <exon e_start="102706" e_stop="102842"/>
          <exon e_start="104661" e_stop="104764"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TATTTTCACTGTCGCCGGCCGTTAAAACTTTTTTTTTCTAGTTCGGAGGTCAAATAATTAACCTCCGATCGGAAGAAGTAGTTATTCTAACTGCTTCTATTTAATCTGAAAACGGGAAAACCCCTGAGCTGGTTAAGGTGGATTTCGTGATGGGATTTTGTATTTGTCCTTTGGAAACTCCTGCTAGATTACTGTGGAGTACTAGTTTCTTCCGCCACAAGCTTATGCTCTTCTAAAACTTAGTCAACTCTCTTTTTTCATACACATCCCTGCTAAAAAAGAAGAACTCTGTGCTGGAGTTTTTGTTTTCCTTTTTCTGTTTCGCCGGAAACATATAAATAATCTTCTGTGTGTAAATAGGCGATTTTCCAGATAGTTGAAAATATGGGATCTGGGCATATATTTTTCGACCCGTCGTCGTGTCACGGCAACATGCTGTTCCTTGGGAGCGGAGATCCTGTTTTCCGAGGTATTCTCTAATCATTATGTTCTCTATTCCAATTACTTATATTACTATGAAAATATAATTTAAGAACTTTTTTGATGACTCAATTCCACTATTAAAATTGAAAGTAAAGTATGTATATGATATGAGTAACACTATCACTAGAAAGTGAAATTCGTCTTGATCTGATTTAATTTTTTTGAATGATGTAAATTTTATTATTCAAATTTACAACCAAAACAAGTATAGAAATATTTTGTCCAAGTTAATTTATTCTGAATCGTACAAGATGAAACGAAGCGGTTAACTTGTAGGGTAACCTGCGATAGATGATTTATAATTTCAGTGTACGAAGAGGTTAAGATATACGTAGATCCTTCGTACATATTTTTATAAGTTGTTTCAGATAGATAGTTTTAAATTCAATTCACTTAGGGTATTGTTTTTATAGATTGATTATCTCTAGTACAGTAAAAATAATGATAAAATTGTAACAACCTTTTTGCATGTAAGTTCTAAGGGTGGCCTTTTATACTATTCTATTTTGAAGCTTGACTTATATTGATTGATACAGGACCAAGATCGACGATGATGAAGATGGAGGACTCCTCGAAGAGGCGACCCTTCTTTAGCTCGCCGGAGGATCTATATGACGAGGAATACTACGACGAGCAGTCACCGGAGAAGAAGCGCCGTCTCACTCCTGAGCAGGTTAGCATCCTGTTCCTCCTTTATCTACCCAAAAATATAAATTAAGTAAATGCGTTTTTTTAATAGTTCGATGGAGTAGTTATCAATTCAACATACTGTGACATATATCTCCTAGCTATCAAGATAGTTAAATTTTTTGGTTCAAATCTCACCATCACATATTTTTGGCAATTGGCCACTACATGTGAAACGATTTGTTTAGTCAAATTATAATTAAGTAACTAAAGAAGATTCCCTCTAAAGTGATTTAAGTTTTTAATTATATTGGAACATATTCACCACTATAGCATCAAATTCTTCACAATATCTACCTTTAAACCCTGAAAAGAAGAGAATTTCTTTTTTATCAACGAGCGTTTTCTTTAAGCAAAATTTTATAATTTTGTGGGATTCGATTACTTGCTGAGCAATAAGTGCATGTCCTGCGTTGTTGGGTACGTAAATGAAGGTGCACTTGTTGGAGAAGAGCTTTGAGACAGAAAACAAGCTGGAGCCCGAGCGCAAAACCCAGCTGGCCAAAAAGCTGGGGCTGCAGCCCAGACAGGTGGCTGTATGGTTCCAAAACCGCCGTGCCCGGTGGAAGACCAAGCAGCTCGAGAGGGATTATGATCAGCTCAAATCCTCTTATGACTCCCTTCTCTCTGATTTTGACTCCGTTCGCAAAGATAACGATAAGCTCAAATCTGAGGTATAACCATATAGTAATAGTGTTGTGATCATTTTATTTGCTTAGATTCTATTATACTTTGTACCAACCTCTTAACATCGATTTTTCTGGTCGATTTTTGGCATATCTATTAATACTATGTCCTTAAGGCCTTAGCTTTTGCAATACTCTATGAGAAAGAATTAACAAATCTTGGATAACACACCTGTCTTGCAACGATTTGATCAATGACAAAAAGCCGCCTTTCTTGTAACACTGGGGAGTCGGATATATATGTAGAATAATATGATGCCTTACTGAATAAAAACTAGCTAGGAGAGAGTCTATGATAATTTTTTTGTAGTATATAGTAGAATATTAAGATATGTTTGTTGACGAAATTTGTCGGCGAAGTTGGTAATTGGTAGAAATTTTAATCTGACTTTTAATTTGAGGTCATATTCTGTGTAACACCTGGCCATCAATATTAGTAGTGGGGAACCTCACAAACAATATTCTTCCTCACCTAGAATAGAAAATTATATCTGTCAATGTCCTTCTGAGTCATCTTGCATCAGAGTCAAATAAATAAAGTAGCATCTGTTCTAACCCCCCCACTTTCAATGTTTTTTTCTATTACTTGGATTTCAATTTCAAAAAAAGCGAATATACTTTTGATATATTGGGAAAACTTGCTTTAAAATATGCGTAGTGATGAAGACCTTACTATATAGATAGTGGATGTATCACTATCAGAGTTACGCTACTGTTATTTCTTAGTAAACTTTTACTAATTTATTCTTTTGCTTTTATTTTGCACCTTCGTTTTTTTAAAAGTGATGTAATAATAGGGTTATCAACAGCATATTTTTTTTTTTTACAATATTACGCTAAGTTGACTTATAACAATTGGCAACTCTTCATAATACGTCAAAGAGTTGGTATACATTGTAAGACTTGCGCATTTACGTCACACATCAAATCAAATTTTATATATAAGTTTATCACAACTTATTGTATAGTAGGTACACCTGACTTGGCTTGTATTCGAGGTTGCTAATCCCACTAAATGTGATTTTATCTTTTTAGCTTACATGATAGCGTGCAAGTAATTAAGTTGTTGTATATAGTAATAGATTTGAAACTATTTTGTTAATTGGGGAAAAATGCAGGTTGTTTCATTGATGGAAAAGTTACAGGGGAAAGTGGTTGGAGGAGCAGGGGGAAATGAAAAATCTGACATCTTGGAGGTGGATGCTATGACGATCCTTCAAGT</genome_strand>
        <mrna_strand>TATTTTCACTGTCGCCGGCCGTTAAAACTTTTTTTTTCTAGTTCGGAGGTCAAATAATTAACCTCCGATCGGAAGAAGTAGTTATTCTAACTGCTTCTATTTAATCTGAAAACGGGAAAACCCCTGAGCTGGTTAAGGTGGATTTCGTGATGGGATTTTGTATTTGTCCTTTGGAAACTCCTGCTAGATTACTGTGGAGTACTAGTTTCTTCCGCCACAAGCTTATGCTCTTCTAAAACTTAGTCAACTCTCTTTTTTCATACACATCCCTGCTAAAAAAGAAAAACTCTGTGCTGGAGTTTTTGTTTTCCTTTTTCTGTTTCGCCGGAAACATATAAATAATCTTCTGTGTGTAAATAGGCGATTTTCCAGATAGTTGAAAATATGGGATCTGGGCATATATTTTTCGACCCGTCGTCGTGTCACGGCAACATGCTGTTCCTTGGGAGCGGAGATCCTGTTTTCCGAG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GACCAAGATCGACGATGATGAAGATGGAGGACTCCTCGAAGAGGCGACCCTTCTTTAGCTCGCCGGAGGATCTATATGACGAGGAATACTACGACGAGCAGTCACCGGAGAAGAAGCGCCGTCTCACTCCTGAGCAG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTGTTTCATTGATGGAAAAGTTACAGGGGAAAGTGGTTGGAGGAGCAGGGGGAAATGAAAAATCTGACATCTTGGAGGTGGATGCTATGACGATCCTTCAAGT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0236E02-u8qcS/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E570139" ref_strand="+" ref_description="SGN-E570139 [14677]">
      <seq>atacttttttttttccagttcggaggtcaaataattaaactccgatctgaagaagtagttattctaactgcttctatttaatctgaaaacgggaaaaacccctgaactgggtaatgtggatttcgtgatgggattttgtatttgtcctttggaaactcctgctagattactgtggagtactagtttcttccgccacaagcttatgctcttctaaaactttgtcaactctctttttcatacacatcccctgctaaaaaaagaactctgttctgaagtttattttctcttttctgtttcgccggaaacatataaataatcttctgtgggtaaataggcgatcttccagatcattgaaaatatgggatctgggcatatatttttcgacccgtcgtcgtgtcacggcaacatgctgttccttgtgcaaacggagatcctgttttccg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0236E02-u8qcS/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0236E02.1" temp_strand="+" temp_description="C02HBa0236E02.1  AC215430.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0236E02 sequenced_by:kribb upload_account_name:korea">
        <position start="101413" stop="102433"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="101710" g_stop="102153" g_length="444"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="443" r_length="443" r_score="0.923"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0236E02.1" gen_strand="+" ref_id="SGN-E570139" ref_strand="+">
        <total_alignment_score>0.923</total_alignment_score>
        <cumulative_length_of_scored_exons>444</cumulative_length_of_scored_exons>
        <coverage percentage="1.002" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0236E02.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E570139" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="101710" e_stop="102153"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAACTTTTTTTTTCTAGTTCGGAGGTCAAATAATTAACCTCCGATCGGAAGAAGTAGTTATTCTAACTGCTTCTATTTAATCTGAAAACGGG-AAAACCCCTGAGCTGGTTAAGGTGGATTTCGTGATGGGATTTTGTATTTGTCCTTTGGAAACTCCTGCTAGATTACTGTGGAGTACTAGTTTCTTCCGCCACAAGCTTATGCTCTTCTAAAACTTAGTCAACTCTCTTTTTTCATACACAT-CCCTGCTAAAAAAGAAGAACTCTGTGCTGGAGTTTTTGTTTTCCTTTTTCTGTTTCGCCGGAAACATATAAATAATCTTCTGTGTGTAAATAGGCGATTTTCCAGATAGTTGAAAATATGGGATCTGGGCATATATTTTTCGACCCGTCGTCGTGTCACGGCAACATGCTGTTCCTTG-G-GAGCGGAGATCCTGTTTTCCG</genome_strand>
        <mrna_strand>ATACTTTTTTTTTTCCAGTTCGGAGGTCAAATAATTAAACTCCGATCTGAAGAAGTAGTTATTCTAACTGCTTCTATTTAATCTGAAAACGGGAAAAACCCCTGAACTGGGTAATGTGGATTTCGTGATGGGATTTTGTATTTGTCCTTTGGAAACTCCTGCTAGATTACTGTGGAGTACTAGTTTCTTCCGCCACAAGCTTATGCTCTTCTAAAACTTTGTCAACTCTC-TTTTTCATACACATCCCCTGCT-AAAAA-AAGAACTCTGTTCTGAAG--TTTATTTTCTCTTTTCTGTTTCGCCGGAAACATATAAATAATCTTCTGTGGGTAAATAGGCGATCTTCCAGATCATTGAAAATATGGGATCTGGGCATATATTTTTCGACCCGTCGTCGTGTCACGGCAACATGCTGTTCCTTGTGCAAACGGAGATCCTGTTTTCCG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0236E02-u8qcS/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E697835" ref_strand="+" ref_description="SGN-E697835 [FA04BG03]">
      <seq>ctgcttctatttaatctgaaaacgggaaaacccctgagctggttaaggtggatttcgcgatgggattttgtatttgtcctttggaaactcctgctagattactgtggagtactactttcttccgccacaaccttatgctcttctaaaacttactcaactctcttttttcatacacatccctgctaaaaaagaacaactctgtgctggagtttttgttttcctttttctgtttccccggaaacatataaataatcttctgtgtgtaaataggcgattttccagatagttgaaaatatgggatctgggcttatatttttcgacccgtcgccccgccaccgcaacatgctgttccctgggagcggagatcctgctttccgacgaccaagatcgacgatgat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0236E02-u8qcS/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0236E02.1" temp_strand="+" temp_description="C02HBa0236E02.1  AC215430.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0236E02 sequenced_by:kribb upload_account_name:korea">
        <position start="101477" stop="103024"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="101777" g_stop="102155" g_length="379"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="379" r_length="379" r_score="0.960"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="102156" i_stop="102705" i_length="550">
            <donor d_prob="1.000" d_score="0.86"/>
            <acceptor a_prob="1.000" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="102706" g_stop="102724" g_length="19"/>
          <reference_exon_boundary r_type="cDNA" r_start="380" r_stop="398" r_length="19" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0236E02.1" gen_strand="+" ref_id="SGN-E697835" ref_strand="+">
        <total_alignment_score>0.960</total_alignment_score>
        <cumulative_length_of_scored_exons>398</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0236E02.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E697835" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="101777" e_stop="102155"/>
          <exon e_start="102706" e_stop="102724"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTGCTTCTATTTAATCTGAAAACGGGAAAACCCCTGAGCTGGTTAAGGTGGATTTCGTGATGGGATTTTGTATTTGTCCTTTGGAAACTCCTGCTAGATTACTGTGGAGTACTAGTTTCTTCCGCCACAAGCTTATGCTCTTCTAAAACTTAGTCAACTCTCTTTTTTCATACACATCCCTGCTAAAAAAGAAGAACTCTGTGCTGGAGTTTTTGTTTTCCTTTTTCTGTTTCGCCGGAAACATATAAATAATCTTCTGTGTGTAAATAGGCGATTTTCCAGATAGTTGAAAATATGGGATCTGGGCATATATTTTTCGACCCGTCGTCGTGTCACGGCAACATGCTGTTCCTTGGGAGCGGAGATCCTGTTTTCCGAGGTATTCTCTAATCATTATGTTCTCTATTCCAATTACTTATATTACTATGAAAATATAATTTAAGAACTTTTTTGATGACTCAATTCCACTATTAAAATTGAAAGTAAAGTATGTATATGATATGAGTAACACTATCACTAGAAAGTGAAATTCGTCTTGATCTGATTTAATTTTTTTGAATGATGTAAATTTTATTATTCAAATTTACAACCAAAACAAGTATAGAAATATTTTGTCCAAGTTAATTTATTCTGAATCGTACAAGATGAAACGAAGCGGTTAACTTGTAGGGTAACCTGCGATAGATGATTTATAATTTCAGTGTACGAAGAGGTTAAGATATACGTAGATCCTTCGTACATATTTTTATAAGTTGTTTCAGATAGATAGTTTTAAATTCAATTCACTTAGGGTATTGTTTTTATAGATTGATTATCTCTAGTACAGTAAAAATAATGATAAAATTGTAACAACCTTTTTGCATGTAAGTTCTAAGGGTGGCCTTTTATACTATTCTATTTTGAAGCTTGACTTATATTGATTGATACAGGACCAAGATCGACGATGAT</genome_strand>
        <mrna_strand>CTGCTTCTATTTAATCTGAAAACGGGAAAACCCCTGAGCTGGTTAAGGTGGATTTCGCGATGGGATTTTGTATTTGTCCTTTGGAAACTCCTGCTAGATTACTGTGGAGTACTACTTTCTTCCGCCACAACCTTATGCTCTTCTAAAACTTACTCAACTCTCTTTTTTCATACACATCCCTGCTAAAAAAGAACAACTCTGTGCTGGAGTTTTTGTTTTCCTTTTTCTGTTTCCCCGGAAACATATAAATAATCTTCTGTGTGTAAATAGGCGATTTTCCAGATAGTTGAAAATATGGGATCTGGGCTTATATTTTTCGACCCGTCGCCCCGCCACCGCAACATGCTGTTCCCTGGGAGCGGAGATCCTGCTTTCCGAC......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GACCAAGATCGACGATGAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0236E02-u8qcS/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E569046" ref_strand="+" ref_description="SGN-E569046 [13424]">
      <seq>tttaatctgaaaacgggaaaaacccctgagctgggtaaggtggatttcgtgatgggattttgtatttgtcctttggaaactcctgctagattactgtggagtactagtttcttccgccacaagcttatgctcttctaaaactttgtcaactctctttttcatacacatcccctgctaaaaaaagaactctgttctggagtttattttctcttttctgtttcgccggaaacatataaataatcttctgtgggtaaataggcgatcttccagatcattgaaaatatgggatctgggcatatatttttcgacccgtcgtcgtgtcacggcaacatgctgttccttggcaacggagatcctgttttccgaggaccaagatcgacgatgatgaagatggaggactcctcgaagaggcgacccttctttagctcaccggaggatctatatgacgaggattactacgatgagcaagtcaccggagaagaagcgccgtctcactcctgagcaggttagcatcctgct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0236E02-u8qcS/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0236E02.1" temp_strand="+" temp_description="C02HBa0236E02.1  AC215430.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0236E02 sequenced_by:kribb upload_account_name:korea">
        <position start="101486" stop="103156"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="101786" g_stop="102155" g_length="370"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="367" r_length="367" r_score="0.943"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="102156" i_stop="102705" i_length="550">
            <donor d_prob="1.000" d_score="0.96"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="102706" g_stop="102853" g_length="148"/>
          <reference_exon_boundary r_type="cDNA" r_start="368" r_stop="516" r_length="149" r_score="0.966"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0236E02.1" gen_strand="+" ref_id="SGN-E569046" ref_strand="+">
        <total_alignment_score>0.950</total_alignment_score>
        <cumulative_length_of_scored_exons>518</cumulative_length_of_scored_exons>
        <coverage percentage="0.998" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0236E02.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E569046" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="101786" e_stop="102155"/>
          <exon e_start="102706" e_stop="102853"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTAATCTGAAAACGGG-AAAACCCCTGAGCTGGTTAAGGTGGATTTCGTGATGGGATTTTGTATTTGTCCTTTGGAAACTCCTGCTAGATTACTGTGGAGTACTAGTTTCTTCCGCCACAAGCTTATGCTCTTCTAAAACTTAGTCAACTCTCTTTTTTCATACACAT-CCCTGCTAAAAAAGAAGAACTCTGTGCTGGAGTTTTTGTTTTCCTTTTTCTGTTTCGCCGGAAACATATAAATAATCTTCTGTGTGTAAATAGGCGATTTTCCAGATAGTTGAAAATATGGGATCTGGGCATATATTTTTCGACCCGTCGTCGTGTCACGGCAACATGCTGTTCCTTGGGAGCGGAGATCCTGTTTTCCGAGGTATTCTCTAATCATTATGTTCTCTATTCCAATTACTTATATTACTATGAAAATATAATTTAAGAACTTTTTTGATGACTCAATTCCACTATTAAAATTGAAAGTAAAGTATGTATATGATATGAGTAACACTATCACTAGAAAGTGAAATTCGTCTTGATCTGATTTAATTTTTTTGAATGATGTAAATTTTATTATTCAAATTTACAACCAAAACAAGTATAGAAATATTTTGTCCAAGTTAATTTATTCTGAATCGTACAAGATGAAACGAAGCGGTTAACTTGTAGGGTAACCTGCGATAGATGATTTATAATTTCAGTGTACGAAGAGGTTAAGATATACGTAGATCCTTCGTACATATTTTTATAAGTTGTTTCAGATAGATAGTTTTAAATTCAATTCACTTAGGGTATTGTTTTTATAGATTGATTATCTCTAGTACAGTAAAAATAATGATAAAATTGTAACAACCTTTTTGCATGTAAGTTCTAAGGGTGGCCTTTTATACTATTCTATTTTGAAGCTTGACTTATATTGATTGATACAGGACCAAGATCGACGATGATGAAGATGGAGGACTCCTCGAAGAGGCGACCCTTCTTTAGCTCGCCGGAGGATCTATATGACGAGGAATACTACGACGAGC-AGTCACCGGAGAAGAAGCGCCGTCTCACTCCTGAGCAGGTTAGCATCCT</genome_strand>
        <mrna_strand>TTTAATCTGAAAACGGGAAAAACCCCTGAGCTGGGTAAGGTGGATTTCGTGATGGGATTTTGTATTTGTCCTTTGGAAACTCCTGCTAGATTACTGTGGAGTACTAGTTTCTTCCGCCACAAGCTTATGCTCTTCTAAAACTTTGTCAACTCTC-TTTTTCATACACATCCCCTGCT-AAAAA-AAGAACTCTGTTCTGGAG--TTTATTTTCTCTTTTCTGTTTCGCCGGAAACATATAAATAATCTTCTGTGGGTAAATAGGCGATCTTCCAGATCATTGAAAATATGGGATCTGGGCATATATTTTTCGACCCGTCGTCGTGTCACGGCAACATGCTGTTCCTTGGCAACGGAGATCCTGTTTTCCGAG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GACCAAGATCGACGATGATGAAGATGGAGGACTCCTCGAAGAGGCGACCCTTCTTTAGCTCACCGGAGGATCTATATGACGAGGATTACTACGATGAGCAAGTCACCGGAGAAGAAGCGCCGTCTCACTCCTGAGCAGGTTAGCATCCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0236E02-u8qcS/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E267132" ref_strand="+" ref_description="SGN-E267132 [cLEI-4-H8]">
      <seq>aaaacccctgagctggttaaggtggatttcgtgatgggattttgtatttgtcctttggaaactcctgctagattactgtggagtactagtttcttccgccacaagcttatgctcttctaaaacttagtcaactctcttttttcatacacatccctgctaaaaaagaagaactctgtgctggagtttttgttttcctttttctgtttcgccggaaacatataaataatcttctgtgtgtaaataggcgattttccagatagttgaaaatatgggatctgggcatatatttttcgacccgtcgtcgtgtcacggcaacatgctgttccttgggagcggagatcctgttttccgaggaccaagatcgacgatgatgaagatggaggactcctcgaagaggcgacccttctttagctcgccggaggatctatatgacgaggaatactacgacgagcagtcaccggagaagaagcgccgtct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0236E02-u8qcS/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0236E02.1" temp_strand="+" temp_description="C02HBa0236E02.1  AC215430.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0236E02 sequenced_by:kribb upload_account_name:korea">
        <position start="101503" stop="103129"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="101803" g_stop="102155" g_length="353"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="353" r_length="353" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="102156" i_stop="102705" i_length="550">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="102706" g_stop="102829" g_length="124"/>
          <reference_exon_boundary r_type="cDNA" r_start="354" r_stop="477" r_length="124" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0236E02.1" gen_strand="+" ref_id="SGN-E267132" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>477</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0236E02.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E267132" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="101803" e_stop="102155"/>
          <exon e_start="102706" e_stop="102829"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAACCCCTGAGCTGGTTAAGGTGGATTTCGTGATGGGATTTTGTATTTGTCCTTTGGAAACTCCTGCTAGATTACTGTGGAGTACTAGTTTCTTCCGCCACAAGCTTATGCTCTTCTAAAACTTAGTCAACTCTCTTTTTTCATACACATCCCTGCTAAAAAAGAAGAACTCTGTGCTGGAGTTTTTGTTTTCCTTTTTCTGTTTCGCCGGAAACATATAAATAATCTTCTGTGTGTAAATAGGCGATTTTCCAGATAGTTGAAAATATGGGATCTGGGCATATATTTTTCGACCCGTCGTCGTGTCACGGCAACATGCTGTTCCTTGGGAGCGGAGATCCTGTTTTCCGAGGTATTCTCTAATCATTATGTTCTCTATTCCAATTACTTATATTACTATGAAAATATAATTTAAGAACTTTTTTGATGACTCAATTCCACTATTAAAATTGAAAGTAAAGTATGTATATGATATGAGTAACACTATCACTAGAAAGTGAAATTCGTCTTGATCTGATTTAATTTTTTTGAATGATGTAAATTTTATTATTCAAATTTACAACCAAAACAAGTATAGAAATATTTTGTCCAAGTTAATTTATTCTGAATCGTACAAGATGAAACGAAGCGGTTAACTTGTAGGGTAACCTGCGATAGATGATTTATAATTTCAGTGTACGAAGAGGTTAAGATATACGTAGATCCTTCGTACATATTTTTATAAGTTGTTTCAGATAGATAGTTTTAAATTCAATTCACTTAGGGTATTGTTTTTATAGATTGATTATCTCTAGTACAGTAAAAATAATGATAAAATTGTAACAACCTTTTTGCATGTAAGTTCTAAGGGTGGCCTTTTATACTATTCTATTTTGAAGCTTGACTTATATTGATTGATACAGGACCAAGATCGACGATGATGAAGATGGAGGACTCCTCGAAGAGGCGACCCTTCTTTAGCTCGCCGGAGGATCTATATGACGAGGAATACTACGACGAGCAGTCACCGGAGAAGAAGCGCCGTCT</genome_strand>
        <mrna_strand>AAAACCCCTGAGCTGGTTAAGGTGGATTTCGTGATGGGATTTTGTATTTGTCCTTTGGAAACTCCTGCTAGATTACTGTGGAGTACTAGTTTCTTCCGCCACAAGCTTATGCTCTTCTAAAACTTAGTCAACTCTCTTTTTTCATACACATCCCTGCTAAAAAAGAAGAACTCTGTGCTGGAGTTTTTGTTTTCCTTTTTCTGTTTCGCCGGAAACATATAAATAATCTTCTGTGTGTAAATAGGCGATTTTCCAGATAGTTGAAAATATGGGATCTGGGCATATATTTTTCGACCCGTCGTCGTGTCACGGCAACATGCTGTTCCTTGGGAGCGGAGATCCTGTTTTCCGAG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GACCAAGATCGACGATGATGAAGATGGAGGACTCCTCGAAGAGGCGACCCTTCTTTAGCTCGCCGGAGGATCTATATGACGAGGAATACTACGACGAGCAGTCACCGGAGAAGAAGCGCCGTCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0236E02-u8qcS/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E319757" ref_strand="+" ref_description="SGN-E319757 [cTOB-12-K6]">
      <seq>ttagtcaactctcttttttcatacacatccctgctaaaaaagaagaactctgtgctggagtttttgttttcctttttctgtttcgccggaaacatataaataatcttctgtgtgtaaataggcgattttccagatagttgaaaatatgggatctgggcatatatttttcgacccgtcgtcgtgtcacggcaacatgctgttccttgggagcggagatcctgttttccgaggaccaagatcgacgatgatgaagatggaggactcctcgaagaggcgacccttctttagctcgccggaggatctatatgacgaggaatactacgacgagcagtcaccggagaagaagcgccgtctcactcctgagcaggtgcacttgttggagaagagctttgagacagaaaacaagctggagcccgagcgcaaaacccagctggccaaaaagctggggctgcagcccagacaggtggctgtatg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0236E02-u8qcS/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0236E02.1" temp_strand="+" temp_description="C02HBa0236E02.1  AC215430.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0236E02 sequenced_by:kribb upload_account_name:korea">
        <position start="101626" stop="103697"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="101926" g_stop="102155" g_length="230"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="230" r_length="230" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="102156" i_stop="102705" i_length="550">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="102706" g_stop="102842" g_length="137"/>
          <reference_exon_boundary r_type="cDNA" r_start="231" r_stop="367" r_length="137" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="102843" i_stop="103290" i_length="448">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.784" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="103291" g_stop="103397" g_length="107"/>
          <reference_exon_boundary r_type="cDNA" r_start="368" r_stop="474" r_length="107" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0236E02.1" gen_strand="+" ref_id="SGN-E319757" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>474</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0236E02.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E319757" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="101926" e_stop="102155"/>
          <exon e_start="102706" e_stop="102842"/>
          <exon e_start="103291" e_stop="103397"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTAGTCAACTCTCTTTTTTCATACACATCCCTGCTAAAAAAGAAGAACTCTGTGCTGGAGTTTTTGTTTTCCTTTTTCTGTTTCGCCGGAAACATATAAATAATCTTCTGTGTGTAAATAGGCGATTTTCCAGATAGTTGAAAATATGGGATCTGGGCATATATTTTTCGACCCGTCGTCGTGTCACGGCAACATGCTGTTCCTTGGGAGCGGAGATCCTGTTTTCCGAGGTATTCTCTAATCATTATGTTCTCTATTCCAATTACTTATATTACTATGAAAATATAATTTAAGAACTTTTTTGATGACTCAATTCCACTATTAAAATTGAAAGTAAAGTATGTATATGATATGAGTAACACTATCACTAGAAAGTGAAATTCGTCTTGATCTGATTTAATTTTTTTGAATGATGTAAATTTTATTATTCAAATTTACAACCAAAACAAGTATAGAAATATTTTGTCCAAGTTAATTTATTCTGAATCGTACAAGATGAAACGAAGCGGTTAACTTGTAGGGTAACCTGCGATAGATGATTTATAATTTCAGTGTACGAAGAGGTTAAGATATACGTAGATCCTTCGTACATATTTTTATAAGTTGTTTCAGATAGATAGTTTTAAATTCAATTCACTTAGGGTATTGTTTTTATAGATTGATTATCTCTAGTACAGTAAAAATAATGATAAAATTGTAACAACCTTTTTGCATGTAAGTTCTAAGGGTGGCCTTTTATACTATTCTATTTTGAAGCTTGACTTATATTGATTGATACAGGACCAAGATCGACGATGATGAAGATGGAGGACTCCTCGAAGAGGCGACCCTTCTTTAGCTCGCCGGAGGATCTATATGACGAGGAATACTACGACGAGCAGTCACCGGAGAAGAAGCGCCGTCTCACTCCTGAGCAGGTTAGCATCCTGTTCCTCCTTTATCTACCCAAAAATATAAATTAAGTAAATGCGTTTTTTTAATAGTTCGATGGAGTAGTTATCAATTCAACATACTGTGACATATATCTCCTAGCTATCAAGATAGTTAAATTTTTTGGTTCAAATCTCACCATCACATATTTTTGGCAATTGGCCACTACATGTGAAACGATTTGTTTAGTCAAATTATAATTAAGTAACTAAAGAAGATTCCCTCTAAAGTGATTTAAGTTTTTAATTATATTGGAACATATTCACCACTATAGCATCAAATTCTTCACAATATCTACCTTTAAACCCTGAAAAGAAGAGAATTTCTTTTTTATCAACGAGCGTTTTCTTTAAGCAAAATTTTATAATTTTGTGGGATTCGATTACTTGCTGAGCAATAAGTGCATGTCCTGCGTTGTTGGGTACGTAAATGAAGGTGCACTTGTTGGAGAAGAGCTTTGAGACAGAAAACAAGCTGGAGCCCGAGCGCAAAACCCAGCTGGCCAAAAAGCTGGGGCTGCAGCCCAGACAGGTGGCTGTATG</genome_strand>
        <mrna_strand>TTAGTCAACTCTCTTTTTTCATACACATCCCTGCTAAAAAAGAAGAACTCTGTGCTGGAGTTTTTGTTTTCCTTTTTCTGTTTCGCCGGAAACATATAAATAATCTTCTGTGTGTAAATAGGCGATTTTCCAGATAGTTGAAAATATGGGATCTGGGCATATATTTTTCGACCCGTCGTCGTGTCACGGCAACATGCTGTTCCTTGGGAGCGGAGATCCTGTTTTCCGAG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GACCAAGATCGACGATGATGAAGATGGAGGACTCCTCGAAGAGGCGACCCTTCTTTAGCTCGCCGGAGGATCTATATGACGAGGAATACTACGACGAGCAGTCACCGGAGAAGAAGCGCCGTCTCACTCCTGAGCAG................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGCACTTGTTGGAGAAGAGCTTTGAGACAGAAAACAAGCTGGAGCCCGAGCGCAAAACCCAGCTGGCCAAAAAGCTGGGGCTGCAGCCCAGACAGGTGGCTGTATG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0236E02-u8qcS/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E705831" ref_strand="+" ref_description="SGN-E705831 [FA28BA10]">
      <seq>cggaaacatataaataatcttctgtgtgtaaataggcgattttccagatagttgaaaatatgggatctgggcatatatttttcgacccgtcgtcgtgtcacggcaacatgctgttccttgggagcggagatcctgttttccgaggaccaagatcgacgatgatgaagatggaggactcctcgaagaggcgacccttctttagctcgccggaggatctatatgacgaggaatactacgacgagcagtcaccggagaagaagcgccgtctcactcctgagcaggtgcacttgttggagaagagctttgagacagaaaacaagctggagcccgagcgcaaaacccagctggccaaaaagctggggctgcagcccagacaggtggctgtatggttccaaaaccgccgtgcccggtggaagaccaagcagctcgagagggattatgatcagctcaaatcctcttatgactcccttctctctgattttgactccgttcgcaaagataacgataagctcaaatctgaggttgtttcattgatggaaaagttacaggggaaagtggttggaggagcagggggaaatgaaaaatctgacatcttggaggtggatgctatgacgatccttcaagtgaaggtgaaggctgaggaccggttgagcagtggcagtggtgggagcgcggtggtaaatgagcatagtccacagctggtggacagtggggactcatattttcacactgatcatgaggagtatccagggcctggaggatgcaatgttcctccacccatggatggtttacaatcggaggaagatgatggtagtgatgatcatgggcattgccatggctacttct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0236E02-u8qcS/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0236E02.1" temp_strand="+" temp_description="C02HBa0236E02.1  AC215430.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0236E02 sequenced_by:kribb upload_account_name:korea">
        <position start="101712" stop="105285"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="102012" g_stop="102155" g_length="144"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="144" r_length="144" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="102156" i_stop="102705" i_length="550">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="102706" g_stop="102842" g_length="137"/>
          <reference_exon_boundary r_type="cDNA" r_start="145" r_stop="281" r_length="137" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="102843" i_stop="103290" i_length="448">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.784" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="103291" g_stop="103530" g_length="240"/>
          <reference_exon_boundary r_type="cDNA" r_start="282" r_stop="521" r_length="240" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="103531" i_stop="104660" i_length="1130">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="104661" g_stop="104985" g_length="325"/>
          <reference_exon_boundary r_type="cDNA" r_start="522" r_stop="846" r_length="325" r_score="0.988"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0236E02.1" gen_strand="+" ref_id="SGN-E705831" ref_strand="+">
        <total_alignment_score>0.995</total_alignment_score>
        <cumulative_length_of_scored_exons>846</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0236E02.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E705831" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="102012" e_stop="102155"/>
          <exon e_start="102706" e_stop="102842"/>
          <exon e_start="103291" e_stop="103530"/>
          <exon e_start="104661" e_stop="104985"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CGGAAACATATAAATAATCTTCTGTGTGTAAATAGGCGATTTTCCAGATAGTTGAAAATATGGGATCTGGGCATATATTTTTCGACCCGTCGTCGTGTCACGGCAACATGCTGTTCCTTGGGAGCGGAGATCCTGTTTTCCGAGGTATTCTCTAATCATTATGTTCTCTATTCCAATTACTTATATTACTATGAAAATATAATTTAAGAACTTTTTTGATGACTCAATTCCACTATTAAAATTGAAAGTAAAGTATGTATATGATATGAGTAACACTATCACTAGAAAGTGAAATTCGTCTTGATCTGATTTAATTTTTTTGAATGATGTAAATTTTATTATTCAAATTTACAACCAAAACAAGTATAGAAATATTTTGTCCAAGTTAATTTATTCTGAATCGTACAAGATGAAACGAAGCGGTTAACTTGTAGGGTAACCTGCGATAGATGATTTATAATTTCAGTGTACGAAGAGGTTAAGATATACGTAGATCCTTCGTACATATTTTTATAAGTTGTTTCAGATAGATAGTTTTAAATTCAATTCACTTAGGGTATTGTTTTTATAGATTGATTATCTCTAGTACAGTAAAAATAATGATAAAATTGTAACAACCTTTTTGCATGTAAGTTCTAAGGGTGGCCTTTTATACTATTCTATTTTGAAGCTTGACTTATATTGATTGATACAGGACCAAGATCGACGATGATGAAGATGGAGGACTCCTCGAAGAGGCGACCCTTCTTTAGCTCGCCGGAGGATCTATATGACGAGGAATACTACGACGAGCAGTCACCGGAGAAGAAGCGCCGTCTCACTCCTGAGCAGGTTAGCATCCTGTTCCTCCTTTATCTACCCAAAAATATAAATTAAGTAAATGCGTTTTTTTAATAGTTCGATGGAGTAGTTATCAATTCAACATACTGTGACATATATCTCCTAGCTATCAAGATAGTTAAATTTTTTGGTTCAAATCTCACCATCACATATTTTTGGCAATTGGCCACTACATGTGAAACGATTTGTTTAGTCAAATTATAATTAAGTAACTAAAGAAGATTCCCTCTAAAGTGATTTAAGTTTTTAATTATATTGGAACATATTCACCACTATAGCATCAAATTCTTCACAATATCTACCTTTAAACCCTGAAAAGAAGAGAATTTCTTTTTTATCAACGAGCGTTTTCTTTAAGCAAAATTTTATAATTTTGTGGGATTCGATTACTTGCTGAGCAATAAGTGCATGTCCTGCGTTGTTGGGTACGTAAATGAAGGTGCACTTGTTGGAGAAGAGCTTTGAGACAGAAAACAAGCTGGAGCCCGAGCGCAAAACCCAGCTGGCCAAAAAGCTGGGGCTGCAGCCCAGACAGGTGGCTGTATGGTTCCAAAACCGCCGTGCCCGGTGGAAGACCAAGCAGCTCGAGAGGGATTATGATCAGCTCAAATCCTCTTATGACTCCCTTCTCTCTGATTTTGACTCCGTTCGCAAAGATAACGATAAGCTCAAATCTGAGGTATAACCATATAGTAATAGTGTTGTGATCATTTTATTTGCTTAGATTCTATTATACTTTGTACCAACCTCTTAACATCGATTTTTCTGGTCGATTTTTGGCATATCTATTAATACTATGTCCTTAAGGCCTTAGCTTTTGCAATACTCTATGAGAAAGAATTAACAAATCTTGGATAACACACCTGTCTTGCAACGATTTGATCAATGACAAAAAGCCGCCTTTCTTGTAACACTGGGGAGTCGGATATATATGTAGAATAATATGATGCCTTACTGAATAAAAACTAGCTAGGAGAGAGTCTATGATAATTTTTTTGTAGTATATAGTAGAATATTAAGATATGTTTGTTGACGAAATTTGTCGGCGAAGTTGGTAATTGGTAGAAATTTTAATCTGACTTTTAATTTGAGGTCATATTCTGTGTAACACCTGGCCATCAATATTAGTAGTGGGGAACCTCACAAACAATATTCTTCCTCACCTAGAATAGAAAATTATATCTGTCAATGTCCTTCTGAGTCATCTTGCATCAGAGTCAAATAAATAAAGTAGCATCTGTTCTAACCCCCCCACTTTCAATGTTTTTTTCTATTACTTGGATTTCAATTTCAAAAAAAGCGAATATACTTTTGATATATTGGGAAAACTTGCTTTAAAATATGCGTAGTGATGAAGACCTTACTATATAGATAGTGGATGTATCACTATCAGAGTTACGCTACTGTTATTTCTTAGTAAACTTTTACTAATTTATTCTTTTGCTTTTATTTTGCACCTTCGTTTTTTTAAAAGTGATGTAATAATAGGGTTATCAACAGCATATTTTTTTTTTTTACAATATTACGCTAAGTTGACTTATAACAATTGGCAACTCTTCATAATACGTCAAAGAGTTGGTATACATTGTAAGACTTGCGCATTTACGTCACACATCAAATCAAATTTTATATATAAGTTTATCACAACTTATTGTATAGTAGGTACACCTGACTTGGCTTGTATTCGAGGTTGCTAATCCCACTAAATGTGATTTTATCTTTTTAGCTTACATGATAGCGTGCAAGTAATTAAGTTGTTGTATATAGTAATAGATTTGAAACTATTTTGTTAATTGGGGAAAAATGCAGGTTGTTTCATTGATGGAAAAGTTACAGGGGAAAGTGGTTGGAGGAGCAGGGGGAAATGAAAAATCTGACATCTTGGAGGTGGATGCTATGACGATCCTTCAAGTGAAGGTGAAGGCTGAGGACCGGTTGAGCAGTGGCAGTGGTGGGAGCGCGGTGGTAGATGAGCATAGTCCACAGCTGGTGGACAGTGGGGACTCATATTTTCACACTGATCATGAGGAGTATCCAGGGCCTGGAGGATGCAATGTTCCTCCACCCATGGATGGTTTACAATCGGAGGAAGATGATGGTAGTGATGATCATGGCAGTTGCCATGGCTACTTCT</genome_strand>
        <mrna_strand>CGGAAACATATAAATAATCTTCTGTGTGTAAATAGGCGATTTTCCAGATAGTTGAAAATATGGGATCTGGGCATATATTTTTCGACCCGTCGTCGTGTCACGGCAACATGCTGTTCCTTGGGAGCGGAGATCCTGTTTTCCGAG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GACCAAGATCGACGATGATGAAGATGGAGGACTCCTCGAAGAGGCGACCCTTCTTTAGCTCGCCGGAGGATCTATATGACGAGGAATACTACGACGAGCAGTCACCGGAGAAGAAGCGCCGTCTCACTCCTGAGCAG................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGCACTTGTTGGAGAAGAGCTTTGAGACAGAAAACAAGCTGGAGCCCGAGCGCAAAACCCAGCTGGCCAAAAAGCTGGGGCTGCAGCCCAGACAGGTGGCTGTATGGTTCCAAAACCGCCGTGCCCGGTGGAAGACCAAGCAGCTCGAGAGGGATTATGATCAGCTCAAATCCTCTTATGACTCCCTTCTCTCTGATTTTGACTCCGTTCGCAAAGATAACGATAAGCTCAAATCTGAG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTGTTTCATTGATGGAAAAGTTACAGGGGAAAGTGGTTGGAGGAGCAGGGGGAAATGAAAAATCTGACATCTTGGAGGTGGATGCTATGACGATCCTTCAAGTGAAGGTGAAGGCTGAGGACCGGTTGAGCAGTGGCAGTGGTGGGAGCGCGGTGGTAAATGAGCATAGTCCACAGCTGGTGGACAGTGGGGACTCATATTTTCACACTGATCATGAGGAGTATCCAGGGCCTGGAGGATGCAATGTTCCTCCACCCATGGATGGTTTACAATCGGAGGAAGATGATGGTAGTGATGATCATGGGCATTGCCATGGCTACTTCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0236E02-u8qcS/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E699978" ref_strand="+" ref_description="SGN-E699978 [FA11DA12]">
      <seq>gctgttccttgggagcggagatcctgttttccgaggaccaagatcgacgatgatgaagatggaggactcctcgaagaggcgacccttctttagctcgccggaggatctatatgacgaggaatactacgacgagcagtcaccggagaagaagcgccgtctcactcctgagcaggtgcacttgttggagaagagctttgagacagaaaacaagctggagcccgagcgcaaaacccagctggccaaaaagctggggctgcagcccagacaggtggctgtatggttccaaaaccgccgtgcccggtggaagaccaagcagctcgagagggattatgatcagctcaaatcctcttatgactcccttctctctgattttgactccgttcgcaaagataacgataagctcaaatctgaggttgtttcattgatggaaaagttacaggggaaagtggttggaggagcagggggaaatgaaaaatctgacatcttggaggtggatgctatgacgatccttcaagtgaaggtgaaggctgaggaccggttgagcagtggcagtggtgggagcgcggtggtagatgagcatagtccacagctggtggacagtggggactcatattttcacactgatcatgaggagtatccagggcctggaggatgcaatgttcctccacccatggatggtttacaatcggaggaagatgatggtagtgatgatcatggcagttgccatggctacttctctaacgtctttgtggcagaagagcagcaccatgaacaaggagaagagcctattggatggttctggtcttaattgaattttagaatattatattacagttttttctatctacgcgcgctttgtatgatgaaataagtgtcgtaattccaacttcttattttaacatctattaatatgcttttgcagcttttaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0236E02-u8qcS/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0236E02.1" temp_strand="+" temp_description="C02HBa0236E02.1  AC215430.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0236E02 sequenced_by:kribb upload_account_name:korea">
        <position start="101821" stop="105476"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="102121" g_stop="102155" g_length="35"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="35" r_length="35" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="102156" i_stop="102705" i_length="550">
            <donor d_prob="1.000" d_score="0.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="102706" g_stop="102842" g_length="137"/>
          <reference_exon_boundary r_type="cDNA" r_start="36" r_stop="172" r_length="137" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="102843" i_stop="103290" i_length="448">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.784" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="103291" g_stop="103530" g_length="240"/>
          <reference_exon_boundary r_type="cDNA" r_start="173" r_stop="412" r_length="240" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="103531" i_stop="104660" i_length="1130">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="104661" g_stop="105181" g_length="521"/>
          <reference_exon_boundary r_type="cDNA" r_start="413" r_stop="933" r_length="521" r_score="0.985"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0236E02.1" gen_strand="+" ref_id="SGN-E699978" ref_strand="+">
        <total_alignment_score>0.991</total_alignment_score>
        <cumulative_length_of_scored_exons>933</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0236E02.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E699978" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="102121" e_stop="102155"/>
          <exon e_start="102706" e_stop="102842"/>
          <exon e_start="103291" e_stop="103530"/>
          <exon e_start="104661" e_stop="105181"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCTGTTCCTTGGGAGCGGAGATCCTGTTTTCCGAGGTATTCTCTAATCATTATGTTCTCTATTCCAATTACTTATATTACTATGAAAATATAATTTAAGAACTTTTTTGATGACTCAATTCCACTATTAAAATTGAAAGTAAAGTATGTATATGATATGAGTAACACTATCACTAGAAAGTGAAATTCGTCTTGATCTGATTTAATTTTTTTGAATGATGTAAATTTTATTATTCAAATTTACAACCAAAACAAGTATAGAAATATTTTGTCCAAGTTAATTTATTCTGAATCGTACAAGATGAAACGAAGCGGTTAACTTGTAGGGTAACCTGCGATAGATGATTTATAATTTCAGTGTACGAAGAGGTTAAGATATACGTAGATCCTTCGTACATATTTTTATAAGTTGTTTCAGATAGATAGTTTTAAATTCAATTCACTTAGGGTATTGTTTTTATAGATTGATTATCTCTAGTACAGTAAAAATAATGATAAAATTGTAACAACCTTTTTGCATGTAAGTTCTAAGGGTGGCCTTTTATACTATTCTATTTTGAAGCTTGACTTATATTGATTGATACAGGACCAAGATCGACGATGATGAAGATGGAGGACTCCTCGAAGAGGCGACCCTTCTTTAGCTCGCCGGAGGATCTATATGACGAGGAATACTACGACGAGCAGTCACCGGAGAAGAAGCGCCGTCTCACTCCTGAGCAGGTTAGCATCCTGTTCCTCCTTTATCTACCCAAAAATATAAATTAAGTAAATGCGTTTTTTTAATAGTTCGATGGAGTAGTTATCAATTCAACATACTGTGACATATATCTCCTAGCTATCAAGATAGTTAAATTTTTTGGTTCAAATCTCACCATCACATATTTTTGGCAATTGGCCACTACATGTGAAACGATTTGTTTAGTCAAATTATAATTAAGTAACTAAAGAAGATTCCCTCTAAAGTGATTTAAGTTTTTAATTATATTGGAACATATTCACCACTATAGCATCAAATTCTTCACAATATCTACCTTTAAACCCTGAAAAGAAGAGAATTTCTTTTTTATCAACGAGCGTTTTCTTTAAGCAAAATTTTATAATTTTGTGGGATTCGATTACTTGCTGAGCAATAAGTGCATGTCCTGCGTTGTTGGGTACGTAAATGAAGGTGCACTTGTTGGAGAAGAGCTTTGAGACAGAAAACAAGCTGGAGCCCGAGCGCAAAACCCAGCTGGCCAAAAAGCTGGGGCTGCAGCCCAGACAGGTGGCTGTATGGTTCCAAAACCGCCGTGCCCGGTGGAAGACCAAGCAGCTCGAGAGGGATTATGATCAGCTCAAATCCTCTTATGACTCCCTTCTCTCTGATTTTGACTCCGTTCGCAAAGATAACGATAAGCTCAAATCTGAGGTATAACCATATAGTAATAGTGTTGTGATCATTTTATTTGCTTAGATTCTATTATACTTTGTACCAACCTCTTAACATCGATTTTTCTGGTCGATTTTTGGCATATCTATTAATACTATGTCCTTAAGGCCTTAGCTTTTGCAATACTCTATGAGAAAGAATTAACAAATCTTGGATAACACACCTGTCTTGCAACGATTTGATCAATGACAAAAAGCCGCCTTTCTTGTAACACTGGGGAGTCGGATATATATGTAGAATAATATGATGCCTTACTGAATAAAAACTAGCTAGGAGAGAGTCTATGATAATTTTTTTGTAGTATATAGTAGAATATTAAGATATGTTTGTTGACGAAATTTGTCGGCGAAGTTGGTAATTGGTAGAAATTTTAATCTGACTTTTAATTTGAGGTCATATTCTGTGTAACACCTGGCCATCAATATTAGTAGTGGGGAACCTCACAAACAATATTCTTCCTCACCTAGAATAGAAAATTATATCTGTCAATGTCCTTCTGAGTCATCTTGCATCAGAGTCAAATAAATAAAGTAGCATCTGTTCTAACCCCCCCACTTTCAATGTTTTTTTCTATTACTTGGATTTCAATTTCAAAAAAAGCGAATATACTTTTGATATATTGGGAAAACTTGCTTTAAAATATGCGTAGTGATGAAGACCTTACTATATAGATAGTGGATGTATCACTATCAGAGTTACGCTACTGTTATTTCTTAGTAAACTTTTACTAATTTATTCTTTTGCTTTTATTTTGCACCTTCGTTTTTTTAAAAGTGATGTAATAATAGGGTTATCAACAGCATATTTTTTTTTTTTACAATATTACGCTAAGTTGACTTATAACAATTGGCAACTCTTCATAATACGTCAAAGAGTTGGTATACATTGTAAGACTTGCGCATTTACGTCACACATCAAATCAAATTTTATATATAAGTTTATCACAACTTATTGTATAGTAGGTACACCTGACTTGGCTTGTATTCGAGGTTGCTAATCCCACTAAATGTGATTTTATCTTTTTAGCTTACATGATAGCGTGCAAGTAATTAAGTTGTTGTATATAGTAATAGATTTGAAACTATTTTGTTAATTGGGGAAAAATGCAGGTTGTTTCATTGATGGAAAAGTTACAGGGGAAAGTGGTTGGAGGAGCAGGGGGAAATGAAAAATCTGACATCTTGGAGGTGGATGCTATGACGATCCTTCAAGTGAAGGTGAAGGCTGAGGACCGGTTGAGCAGTGGCAGTGGTGGGAGCGCGGTGGTAGATGAGCATAGTCCACAGCTGGTGGACAGTGGGGACTCATATTTTCACACTGATCATGAGGAGTATCCAGGGCCTGGAGGATGCAATGTTCCTCCACCCATGGATGGTTTACAATCGGAGGAAGATGATGGTAGTGATGATCATGGCAGTTGCCATGGCTACTTCTCTAACGTCTTTGTGGCAGAAGAGCAGCACCATGAACAAGGAGAAGAGCCTATTGGATGGTTCTGGTCTTAATTGAATTTTAGAATATTATATTACAGTTTTTCTTATCTACGCGCGCTTTGTATGATGAAATAAGTGTCGTAATTCCAACTTCTTATTTAAACATCTATTAATATGCTTTTGCAGCTTTTATTCTC</genome_strand>
        <mrna_strand>GCTGTTCCTTGGGAGCGGAGATCCTGTTTTCCGAG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GACCAAGATCGACGATGATGAAGATGGAGGACTCCTCGAAGAGGCGACCCTTCTTTAGCTCGCCGGAGGATCTATATGACGAGGAATACTACGACGAGCAGTCACCGGAGAAGAAGCGCCGTCTCACTCCTGAGCAG................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGCACTTGTTGGAGAAGAGCTTTGAGACAGAAAACAAGCTGGAGCCCGAGCGCAAAACCCAGCTGGCCAAAAAGCTGGGGCTGCAGCCCAGACAGGTGGCTGTATGGTTCCAAAACCGCCGTGCCCGGTGGAAGACCAAGCAGCTCGAGAGGGATTATGATCAGCTCAAATCCTCTTATGACTCCCTTCTCTCTGATTTTGACTCCGTTCGCAAAGATAACGATAAGCTCAAATCTGAG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTGTTTCATTGATGGAAAAGTTACAGGGGAAAGTGGTTGGAGGAGCAGGGGGAAATGAAAAATCTGACATCTTGGAGGTGGATGCTATGACGATCCTTCAAGTGAAGGTGAAGGCTGAGGACCGGTTGAGCAGTGGCAGTGGTGGGAGCGCGGTGGTAGATGAGCATAGTCCACAGCTGGTGGACAGTGGGGACTCATATTTTCACACTGATCATGAGGAGTATCCAGGGCCTGGAGGATGCAATGTTCCTCCACCCATGGATGGTTTACAATCGGAGGAAGATGATGGTAGTGATGATCATGGCAGTTGCCATGGCTACTTCTCTAACGTCTTTGTGGCAGAAGAGCAGCACCATGAACAAGGAGAAGAGCCTATTGGATGGTTCTGGTCTTAATTGAATTTTAGAATATTATATTACAGTTTTTTCTATCTACGCGCGCTTTGTATGATGAAATAAGTGTCGTAATTCCAACTTCTTATTTTAACATCTATTAATATGCTTTTGCAGCTTTTAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0236E02-u8qcS/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E253438" ref_strand="+" ref_description="SGN-E253438 [cLEG-24-B22]">
      <seq>tataagttgtttcagatagatagttttaaattcaattcacttagggtattgtgtttatagattgattatctctagtacagtaaaaataatgataaaattgtaacaacctttttgcatgaccaagatcgacgatgatgaagatggaggactcctcgaagaggcgacccttctttagctcgccggaggatctatatgacgaggaatactaccacgagcagtcaccgtataagaagcgccgtctcactcctgagcaggtgcacttgttggagaagagctttgagacagaaaacaagctggagcccgagcgcaaaacccagctggccaaaaagctggggctgcagcccagacaggtggctgtatggttccaaaaccgccgtgcccggtggaagaccaagcagctcgagagggattatgatcagctcaaatcctcttatgactcccttctctctgattttgactccgttcgcaaagataacgatgagctcaaatc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0236E02-u8qcS/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0236E02.1" temp_strand="+" temp_description="C02HBa0236E02.1  AC215430.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0236E02 sequenced_by:kribb upload_account_name:korea">
        <position start="102223" stop="103826"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="102523" g_stop="102639" g_length="117"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="117" r_length="117" r_score="0.991"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="102640" i_stop="102705" i_length="66">
            <donor d_prob="0.000" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="102706" g_stop="102842" g_length="137"/>
          <reference_exon_boundary r_type="cDNA" r_start="118" r_stop="254" r_length="137" r_score="0.978"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="102843" i_stop="103290" i_length="448">
            <donor d_prob="0.999" d_score="0.94"/>
            <acceptor a_prob="0.784" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="103291" g_stop="103526" g_length="236"/>
          <reference_exon_boundary r_type="cDNA" r_start="255" r_stop="490" r_length="236" r_score="0.996"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0236E02.1" gen_strand="+" ref_id="SGN-E253438" ref_strand="+">
        <total_alignment_score>0.990</total_alignment_score>
        <cumulative_length_of_scored_exons>490</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0236E02.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E253438" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="102523" e_stop="102639"/>
          <exon e_start="102706" e_stop="102842"/>
          <exon e_start="103291" e_stop="103526"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TATAAGTTGTTTCAGATAGATAGTTTTAAATTCAATTCACTTAGGGTATTGTTTTTATAGATTGATTATCTCTAGTACAGTAAAAATAATGATAAAATTGTAACAACCTTTTTGCATGTAAGTTCTAAGGGTGGCCTTTTATACTATTCTATTTTGAAGCTTGACTTATATTGATTGATACAGGACCAAGATCGACGATGATGAAGATGGAGGACTCCTCGAAGAGGCGACCCTTCTTTAGCTCGCCGGAGGATCTATATGACGAGGAATACTACGACGAGCAGTCACCGGAGAAGAAGCGCCGTCTCACTCCTGAGCAGGTTAGCATCCTGTTCCTCCTTTATCTACCCAAAAATATAAATTAAGTAAATGCGTTTTTTTAATAGTTCGATGGAGTAGTTATCAATTCAACATACTGTGACATATATCTCCTAGCTATCAAGATAGTTAAATTTTTTGGTTCAAATCTCACCATCACATATTTTTGGCAATTGGCCACTACATGTGAAACGATTTGTTTAGTCAAATTATAATTAAGTAACTAAAGAAGATTCCCTCTAAAGTGATTTAAGTTTTTAATTATATTGGAACATATTCACCACTATAGCATCAAATTCTTCACAATATCTACCTTTAAACCCTGAAAAGAAGAGAATTTCTTTTTTATCAACGAGCGTTTTCTTTAAGCAAAATTTTATAATTTTGTGGGATTCGATTACTTGCTGAGCAATAAGTGCATGTCCTGCGTTGTTGGGTACGTAAATGAAGGTGCACTTGTTGGAGAAGAGCTTTGAGACAGAAAACAAGCTGGAGCCCGAGCGCAAAACCCAGCTGGCCAAAAAGCTGGGGCTGCAGCCCAGACAGGTGGCTGTATGGTTCCAAAACCGCCGTGCCCGGTGGAAGACCAAGCAGCTCGAGAGGGATTATGATCAGCTCAAATCCTCTTATGACTCCCTTCTCTCTGATTTTGACTCCGTTCGCAAAGATAACGATAAGCTCAAATC</genome_strand>
        <mrna_strand>TATAAGTTGTTTCAGATAGATAGTTTTAAATTCAATTCACTTAGGGTATTGTGTTTATAGATTGATTATCTCTAGTACAGTAAAAATAATGATAAAATTGTAACAACCTTTTTGCAT..................................................................GACCAAGATCGACGATGATGAAGATGGAGGACTCCTCGAAGAGGCGACCCTTCTTTAGCTCGCCGGAGGATCTATATGACGAGGAATACTACCACGAGCAGTCACCGTATAAGAAGCGCCGTCTCACTCCTGAGCAG................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGCACTTGTTGGAGAAGAGCTTTGAGACAGAAAACAAGCTGGAGCCCGAGCGCAAAACCCAGCTGGCCAAAAAGCTGGGGCTGCAGCCCAGACAGGTGGCTGTATGGTTCCAAAACCGCCGTGCCCGGTGGAAGACCAAGCAGCTCGAGAGGGATTATGATCAGCTCAAATCCTCTTATGACTCCCTTCTCTCTGATTTTGACTCCGTTCGCAAAGATAACGATGAGCTCAAATC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0236E02-u8qcS/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E305045" ref_strand="+" ref_description="SGN-E305045 [cLEX-10-P11]">
      <seq>agatcctgttttccgaggaccaagatcgacgatgatgaagatggaggactcctcgaagaggcgacccttctttagctcgccggaggatctatatgacgaggaatactacgacgagcagtcaccggagaagaagcgccgtctcactcctgagcaggtgcacttgttggagaagagctttgagacagaaaacaagctggagcccgagcgcaaaacccagctggccaaaaagctggggctgcagcccagacaggtggctgtatggttccaaaaccgccgtgcccggtggaagaccaagcagctcgagagggattatgatcagctcaaatcctcttatgactcccttctctctgattttgactccgttcgcaaagataacgataagctcaaatctgaggttgtttcattgatggaaaagttacaggggaaagtggttggaggagcagggggaaatgaaaaatctgacatcttggaggtggatgctatgacgatccttcaagtg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0236E02-u8qcS/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0236E02.1" temp_strand="+" temp_description="C02HBa0236E02.1  AC215430.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0236E02 sequenced_by:kribb upload_account_name:korea">
        <position start="102390" stop="105065"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="102706" g_stop="102842" g_length="137"/>
          <reference_exon_boundary r_type="cDNA" r_start="18" r_stop="154" r_length="137" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="102843" i_stop="103290" i_length="448">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.784" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="103291" g_stop="103530" g_length="240"/>
          <reference_exon_boundary r_type="cDNA" r_start="155" r_stop="394" r_length="240" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="103531" i_stop="104660" i_length="1130">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="104661" g_stop="104765" g_length="105"/>
          <reference_exon_boundary r_type="cDNA" r_start="395" r_stop="499" r_length="105" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0236E02.1" gen_strand="+" ref_id="SGN-E305045" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>482</cumulative_length_of_scored_exons>
        <coverage percentage="0.966" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0236E02.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E305045" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="102706" e_stop="102842"/>
          <exon e_start="103291" e_stop="103530"/>
          <exon e_start="104661" e_stop="104765"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GACCAAGATCGACGATGATGAAGATGGAGGACTCCTCGAAGAGGCGACCCTTCTTTAGCTCGCCGGAGGATCTATATGACGAGGAATACTACGACGAGCAGTCACCGGAGAAGAAGCGCCGTCTCACTCCTGAGCAGGTTAGCATCCTGTTCCTCCTTTATCTACCCAAAAATATAAATTAAGTAAATGCGTTTTTTTAATAGTTCGATGGAGTAGTTATCAATTCAACATACTGTGACATATATCTCCTAGCTATCAAGATAGTTAAATTTTTTGGTTCAAATCTCACCATCACATATTTTTGGCAATTGGCCACTACATGTGAAACGATTTGTTTAGTCAAATTATAATTAAGTAACTAAAGAAGATTCCCTCTAAAGTGATTTAAGTTTTTAATTATATTGGAACATATTCACCACTATAGCATCAAATTCTTCACAATATCTACCTTTAAACCCTGAAAAGAAGAGAATTTCTTTTTTATCAACGAGCGTTTTCTTTAAGCAAAATTTTATAATTTTGTGGGATTCGATTACTTGCTGAGCAATAAGTGCATGTCCTGCGTTGTTGGGTACGTAAATGAAGGTGCACTTGTTGGAGAAGAGCTTTGAGACAGAAAACAAGCTGGAGCCCGAGCGCAAAACCCAGCTGGCCAAAAAGCTGGGGCTGCAGCCCAGACAGGTGGCTGTATGGTTCCAAAACCGCCGTGCCCGGTGGAAGACCAAGCAGCTCGAGAGGGATTATGATCAGCTCAAATCCTCTTATGACTCCCTTCTCTCTGATTTTGACTCCGTTCGCAAAGATAACGATAAGCTCAAATCTGAGGTATAACCATATAGTAATAGTGTTGTGATCATTTTATTTGCTTAGATTCTATTATACTTTGTACCAACCTCTTAACATCGATTTTTCTGGTCGATTTTTGGCATATCTATTAATACTATGTCCTTAAGGCCTTAGCTTTTGCAATACTCTATGAGAAAGAATTAACAAATCTTGGATAACACACCTGTCTTGCAACGATTTGATCAATGACAAAAAGCCGCCTTTCTTGTAACACTGGGGAGTCGGATATATATGTAGAATAATATGATGCCTTACTGAATAAAAACTAGCTAGGAGAGAGTCTATGATAATTTTTTTGTAGTATATAGTAGAATATTAAGATATGTTTGTTGACGAAATTTGTCGGCGAAGTTGGTAATTGGTAGAAATTTTAATCTGACTTTTAATTTGAGGTCATATTCTGTGTAACACCTGGCCATCAATATTAGTAGTGGGGAACCTCACAAACAATATTCTTCCTCACCTAGAATAGAAAATTATATCTGTCAATGTCCTTCTGAGTCATCTTGCATCAGAGTCAAATAAATAAAGTAGCATCTGTTCTAACCCCCCCACTTTCAATGTTTTTTTCTATTACTTGGATTTCAATTTCAAAAAAAGCGAATATACTTTTGATATATTGGGAAAACTTGCTTTAAAATATGCGTAGTGATGAAGACCTTACTATATAGATAGTGGATGTATCACTATCAGAGTTACGCTACTGTTATTTCTTAGTAAACTTTTACTAATTTATTCTTTTGCTTTTATTTTGCACCTTCGTTTTTTTAAAAGTGATGTAATAATAGGGTTATCAACAGCATATTTTTTTTTTTTACAATATTACGCTAAGTTGACTTATAACAATTGGCAACTCTTCATAATACGTCAAAGAGTTGGTATACATTGTAAGACTTGCGCATTTACGTCACACATCAAATCAAATTTTATATATAAGTTTATCACAACTTATTGTATAGTAGGTACACCTGACTTGGCTTGTATTCGAGGTTGCTAATCCCACTAAATGTGATTTTATCTTTTTAGCTTACATGATAGCGTGCAAGTAATTAAGTTGTTGTATATAGTAATAGATTTGAAACTATTTTGTTAATTGGGGAAAAATGCAGGTTGTTTCATTGATGGAAAAGTTACAGGGGAAAGTGGTTGGAGGAGCAGGGGGAAATGAAAAATCTGACATCTTGGAGGTGGATGCTATGACGATCCTTCAAGTG</genome_strand>
        <mrna_strand>GACCAAGATCGACGATGATGAAGATGGAGGACTCCTCGAAGAGGCGACCCTTCTTTAGCTCGCCGGAGGATCTATATGACGAGGAATACTACGACGAGCAGTCACCGGAGAAGAAGCGCCGTCTCACTCCTGAGCAG................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGCACTTGTTGGAGAAGAGCTTTGAGACAGAAAACAAGCTGGAGCCCGAGCGCAAAACCCAGCTGGCCAAAAAGCTGGGGCTGCAGCCCAGACAGGTGGCTGTATGGTTCCAAAACCGCCGTGCCCGGTGGAAGACCAAGCAGCTCGAGAGGGATTATGATCAGCTCAAATCCTCTTATGACTCCCTTCTCTCTGATTTTGACTCCGTTCGCAAAGATAACGATAAGCTCAAATCTGAG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTGTTTCATTGATGGAAAAGTTACAGGGGAAAGTGGTTGGAGGAGCAGGGGGAAATGAAAAATCTGACATCTTGGAGGTGGATGCTATGACGATCCTTCAAGTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0236E02-u8qcS/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E704716" ref_strand="+" ref_description="SGN-E704716 [FA25AC05]">
      <seq>ccaagatcgacgatgatgaagatggaggactcctcgaagaggcgacccttctttagctcgccggaggatctatatgacgaggaatactacgacgagcagtcaccggagaagaagcgccgtctcactcctgagcaggtgcacttgttggagaagagctttgagacagaaaacaagctggagcccgagcgcaaaacccagctggccaaaaagctggggctgcagcccagacaggtggctgtatggttccaaaaccgccgtgcccggtggaagaccaagcagctcgagagggattatgatcagctcaaatcctcttatgactcccttctctctgattttgactccgttcgcaaagataacgataagctcaaatctgaggttgtttcattgatggaaaagttacaggggaaagtggttggaggagcagggggaaatgaaaaatctgacatcttggaggtggatgctatgacgatccttcaagtgaaggtgaaggctgaggaccggttgagcagtggcagtggtgggagcgcggtggtagatgagcatagtccacagctggtggacagtggggactcatattttcacactgatcatgaggagtatccagggcctggaggatgcaatgttcctccacccatggatggtttacaatcggaggaagatgatggtagtgatgatcatggcagttgccatggctacttctctaacgtcttttgtggcagaagagcaccaccatgatcaaggagaagagcctatcggatggttctggtcttaattgaattttacaatattatattacagtttttcttatctacgcgcgctttgtatga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0236E02-u8qcS/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0236E02.1" temp_strand="+" temp_description="C02HBa0236E02.1  AC215430.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0236E02 sequenced_by:kribb upload_account_name:korea">
        <position start="102408" stop="105411"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="102708" g_stop="102842" g_length="135"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="135" r_length="135" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="102843" i_stop="103290" i_length="448">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.784" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="103291" g_stop="103530" g_length="240"/>
          <reference_exon_boundary r_type="cDNA" r_start="136" r_stop="375" r_length="240" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="103531" i_stop="104660" i_length="1130">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="104661" g_stop="105111" g_length="451"/>
          <reference_exon_boundary r_type="cDNA" r_start="376" r_stop="827" r_length="452" r_score="0.987"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0236E02.1" gen_strand="+" ref_id="SGN-E704716" ref_strand="+">
        <total_alignment_score>0.993</total_alignment_score>
        <cumulative_length_of_scored_exons>826</cumulative_length_of_scored_exons>
        <coverage percentage="0.999" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0236E02.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E704716" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="102708" e_stop="102842"/>
          <exon e_start="103291" e_stop="103530"/>
          <exon e_start="104661" e_stop="105111"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCAAGATCGACGATGATGAAGATGGAGGACTCCTCGAAGAGGCGACCCTTCTTTAGCTCGCCGGAGGATCTATATGACGAGGAATACTACGACGAGCAGTCACCGGAGAAGAAGCGCCGTCTCACTCCTGAGCAGGTTAGCATCCTGTTCCTCCTTTATCTACCCAAAAATATAAATTAAGTAAATGCGTTTTTTTAATAGTTCGATGGAGTAGTTATCAATTCAACATACTGTGACATATATCTCCTAGCTATCAAGATAGTTAAATTTTTTGGTTCAAATCTCACCATCACATATTTTTGGCAATTGGCCACTACATGTGAAACGATTTGTTTAGTCAAATTATAATTAAGTAACTAAAGAAGATTCCCTCTAAAGTGATTTAAGTTTTTAATTATATTGGAACATATTCACCACTATAGCATCAAATTCTTCACAATATCTACCTTTAAACCCTGAAAAGAAGAGAATTTCTTTTTTATCAACGAGCGTTTTCTTTAAGCAAAATTTTATAATTTTGTGGGATTCGATTACTTGCTGAGCAATAAGTGCATGTCCTGCGTTGTTGGGTACGTAAATGAAGGTGCACTTGTTGGAGAAGAGCTTTGAGACAGAAAACAAGCTGGAGCCCGAGCGCAAAACCCAGCTGGCCAAAAAGCTGGGGCTGCAGCCCAGACAGGTGGCTGTATGGTTCCAAAACCGCCGTGCCCGGTGGAAGACCAAGCAGCTCGAGAGGGATTATGATCAGCTCAAATCCTCTTATGACTCCCTTCTCTCTGATTTTGACTCCGTTCGCAAAGATAACGATAAGCTCAAATCTGAGGTATAACCATATAGTAATAGTGTTGTGATCATTTTATTTGCTTAGATTCTATTATACTTTGTACCAACCTCTTAACATCGATTTTTCTGGTCGATTTTTGGCATATCTATTAATACTATGTCCTTAAGGCCTTAGCTTTTGCAATACTCTATGAGAAAGAATTAACAAATCTTGGATAACACACCTGTCTTGCAACGATTTGATCAATGACAAAAAGCCGCCTTTCTTGTAACACTGGGGAGTCGGATATATATGTAGAATAATATGATGCCTTACTGAATAAAAACTAGCTAGGAGAGAGTCTATGATAATTTTTTTGTAGTATATAGTAGAATATTAAGATATGTTTGTTGACGAAATTTGTCGGCGAAGTTGGTAATTGGTAGAAATTTTAATCTGACTTTTAATTTGAGGTCATATTCTGTGTAACACCTGGCCATCAATATTAGTAGTGGGGAACCTCACAAACAATATTCTTCCTCACCTAGAATAGAAAATTATATCTGTCAATGTCCTTCTGAGTCATCTTGCATCAGAGTCAAATAAATAAAGTAGCATCTGTTCTAACCCCCCCACTTTCAATGTTTTTTTCTATTACTTGGATTTCAATTTCAAAAAAAGCGAATATACTTTTGATATATTGGGAAAACTTGCTTTAAAATATGCGTAGTGATGAAGACCTTACTATATAGATAGTGGATGTATCACTATCAGAGTTACGCTACTGTTATTTCTTAGTAAACTTTTACTAATTTATTCTTTTGCTTTTATTTTGCACCTTCGTTTTTTTAAAAGTGATGTAATAATAGGGTTATCAACAGCATATTTTTTTTTTTTACAATATTACGCTAAGTTGACTTATAACAATTGGCAACTCTTCATAATACGTCAAAGAGTTGGTATACATTGTAAGACTTGCGCATTTACGTCACACATCAAATCAAATTTTATATATAAGTTTATCACAACTTATTGTATAGTAGGTACACCTGACTTGGCTTGTATTCGAGGTTGCTAATCCCACTAAATGTGATTTTATCTTTTTAGCTTACATGATAGCGTGCAAGTAATTAAGTTGTTGTATATAGTAATAGATTTGAAACTATTTTGTTAATTGGGGAAAAATGCAGGTTGTTTCATTGATGGAAAAGTTACAGGGGAAAGTGGTTGGAGGAGCAGGGGGAAATGAAAAATCTGACATCTTGGAGGTGGATGCTATGACGATCCTTCAAGTGAAGGTGAAGGCTGAGGACCGGTTGAGCAGTGGCAGTGGTGGGAGCGCGGTGGTAGATGAGCATAGTCCACAGCTGGTGGACAGTGGGGACTCATATTTTCACACTGATCATGAGGAGTATCCAGGGCCTGGAGGATGCAATGTTCCTCCACCCATGGATGGTTTACAATCGGAGGAAGATGATGGTAGTGATGATCATGGCAGTTGCCATGGCTACTTCTCTAACGTC-TTTGTGGCAGAAGAGCAGCACCATGAACAAGGAGAAGAGCCTATTGGATGGTTCTGGTCTTAATTGAATTTTAGAATATTATATTACAGTTTTTCTTATCTACGCGCGCTTTGTATGA</genome_strand>
        <mrna_strand>CCAAGATCGACGATGATGAAGATGGAGGACTCCTCGAAGAGGCGACCCTTCTTTAGCTCGCCGGAGGATCTATATGACGAGGAATACTACGACGAGCAGTCACCGGAGAAGAAGCGCCGTCTCACTCCTGAGCAG................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGCACTTGTTGGAGAAGAGCTTTGAGACAGAAAACAAGCTGGAGCCCGAGCGCAAAACCCAGCTGGCCAAAAAGCTGGGGCTGCAGCCCAGACAGGTGGCTGTATGGTTCCAAAACCGCCGTGCCCGGTGGAAGACCAAGCAGCTCGAGAGGGATTATGATCAGCTCAAATCCTCTTATGACTCCCTTCTCTCTGATTTTGACTCCGTTCGCAAAGATAACGATAAGCTCAAATCTGAG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTGTTTCATTGATGGAAAAGTTACAGGGGAAAGTGGTTGGAGGAGCAGGGGGAAATGAAAAATCTGACATCTTGGAGGTGGATGCTATGACGATCCTTCAAGTGAAGGTGAAGGCTGAGGACCGGTTGAGCAGTGGCAGTGGTGGGAGCGCGGTGGTAGATGAGCATAGTCCACAGCTGGTGGACAGTGGGGACTCATATTTTCACACTGATCATGAGGAGTATCCAGGGCCTGGAGGATGCAATGTTCCTCCACCCATGGATGGTTTACAATCGGAGGAAGATGATGGTAGTGATGATCATGGCAGTTGCCATGGCTACTTCTCTAACGTCTTTTGTGGCAGAAGAGCACCACCATGATCAAGGAGAAGAGCCTATCGGATGGTTCTGGTCTTAATTGAATTTTACAATATTATATTACAGTTTTTCTTATCTACGCGCGCTTTGTATGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0236E02-u8qcS/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E581972" ref_strand="+" ref_description="SGN-E581972 [7605]">
      <seq>accttgaaaagaaagagaatttctttttatcaacgagcgttttctttaagcaaaattttataattttgtggattccgattacttgctgagcaataagtgcatgtcttgtgttgttgggtacgtaaatgaaggtgcacttgttggagaagagctttgagacagagaacaagctggagcccgaacgcaagacccagctggccaaaaagctggggctgcagcccaggcaggtggctgtgtggttccaaaaccgc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0236E02-u8qcS/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0236E02.1" temp_strand="+" temp_description="C02HBa0236E02.1  AC215430.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0236E02 sequenced_by:kribb upload_account_name:korea">
        <position start="102860" stop="103710"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="103160" g_stop="103410" g_length="251"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="251" r_length="251" r_score="0.944"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0236E02.1" gen_strand="+" ref_id="SGN-E581972" ref_strand="+">
        <total_alignment_score>0.944</total_alignment_score>
        <cumulative_length_of_scored_exons>251</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0236E02.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E581972" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="103160" e_stop="103410"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACCCTGAAAAGA-AGAGAATTTCTTTTTTATCAACGAGCGTTTTCTTTAAGCAAAATTTTATAATTTTGTGGGATTCGATTACTTGCTGAGCAATAAGTGCATGTCCTGCGTTGTTGGGTACGTAAATGAAGGTGCACTTGTTGGAGAAGAGCTTTGAGACAGAAAACAAGCTGGAGCCCGAGCGCAAAACCCAGCTGGCCAAAAAGCTGGGGCTGCAGCCCAGACAGGTGGCTGTATGGTTCCAAAACCGC</genome_strand>
        <mrna_strand>ACCTTGAAAAGAAAGAGAATTTC-TTTTTATCAACGAGCGTTTTCTTTAAGCAAAATTTTATAATTTTGTGGATTCCGATTACTTGCTGAGCAATAAGTGCATGTCTTGTGTTGTTGGGTACGTAAATGAAGGTGCACTTGTTGGAGAAGAGCTTTGAGACAGAGAACAAGCTGGAGCCCGAACGCAAGACCCAGCTGGCCAAAAAGCTGGGGCTGCAGCCCAGGCAGGTGGCTGTGTGGTTCCAAAACCGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0236E02-u8qcS/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E441162" ref_strand="-" ref_description="SGN-E441162 [cSTA-29-K18]">
      <seq>tctctctgattttgactccattcgcaaagataacgataagctcaaatctgaggttgtttcattaatggaaaagttgcaggggaaagtggttggaggagcaggggtaagtgaaaaatctgatgtcttggaggtagatgctatgacagcgacccttcaagtgaaggtgaaggctgaggaccggttgagcagtggcagtggtgggagcgctgtggtagatgagcatagtccacagctggtggacagtggggactcatattttcacactgatcatgaggagtatccagggcctggaggatgcaatgttcctccacacatggatggtttacaatcagaggaagatgatggtagtgatgatggcagttgccatggctacttctctaacgtctttgtgacagaggtgcagcaccatgaagaaggagaagagcctattggatggttctggtcttaattgaattttagaataatgtatgcagtttttctcatctacgcgcgcgctttgtatataaataag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0236E02-u8qcS/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0236E02.1" temp_strand="+" temp_description="C02HBa0236E02.1  AC215430.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0236E02 sequenced_by:kribb upload_account_name:korea">
        <position start="103179" stop="105377"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="103479" g_stop="103530" g_length="52"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="52" r_length="52" r_score="0.981"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="103531" i_stop="104660" i_length="1130">
            <donor d_prob="0.999" d_score="0.98"/>
            <acceptor a_prob="1.000" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="104661" g_stop="105120" g_length="460"/>
          <reference_exon_boundary r_type="cDNA" r_start="53" r_stop="511" r_length="459" r_score="0.920"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0236E02.1" gen_strand="+" ref_id="SGN-E441162" ref_strand="-">
        <total_alignment_score>0.926</total_alignment_score>
        <cumulative_length_of_scored_exons>512</cumulative_length_of_scored_exons>
        <coverage percentage="1.002" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0236E02.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E441162" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="103479" e_stop="103530"/>
          <exon e_start="104661" e_stop="105120"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCTCTCTGATTTTGACTCCGTTCGCAAAGATAACGATAAGCTCAAATCTGAGGTATAACCATATAGTAATAGTGTTGTGATCATTTTATTTGCTTAGATTCTATTATACTTTGTACCAACCTCTTAACATCGATTTTTCTGGTCGATTTTTGGCATATCTATTAATACTATGTCCTTAAGGCCTTAGCTTTTGCAATACTCTATGAGAAAGAATTAACAAATCTTGGATAACACACCTGTCTTGCAACGATTTGATCAATGACAAAAAGCCGCCTTTCTTGTAACACTGGGGAGTCGGATATATATGTAGAATAATATGATGCCTTACTGAATAAAAACTAGCTAGGAGAGAGTCTATGATAATTTTTTTGTAGTATATAGTAGAATATTAAGATATGTTTGTTGACGAAATTTGTCGGCGAAGTTGGTAATTGGTAGAAATTTTAATCTGACTTTTAATTTGAGGTCATATTCTGTGTAACACCTGGCCATCAATATTAGTAGTGGGGAACCTCACAAACAATATTCTTCCTCACCTAGAATAGAAAATTATATCTGTCAATGTCCTTCTGAGTCATCTTGCATCAGAGTCAAATAAATAAAGTAGCATCTGTTCTAACCCCCCCACTTTCAATGTTTTTTTCTATTACTTGGATTTCAATTTCAAAAAAAGCGAATATACTTTTGATATATTGGGAAAACTTGCTTTAAAATATGCGTAGTGATGAAGACCTTACTATATAGATAGTGGATGTATCACTATCAGAGTTACGCTACTGTTATTTCTTAGTAAACTTTTACTAATTTATTCTTTTGCTTTTATTTTGCACCTTCGTTTTTTTAAAAGTGATGTAATAATAGGGTTATCAACAGCATATTTTTTTTTTTTACAATATTACGCTAAGTTGACTTATAACAATTGGCAACTCTTCATAATACGTCAAAGAGTTGGTATACATTGTAAGACTTGCGCATTTACGTCACACATCAAATCAAATTTTATATATAAGTTTATCACAACTTATTGTATAGTAGGTACACCTGACTTGGCTTGTATTCGAGGTTGCTAATCCCACTAAATGTGATTTTATCTTTTTAGCTTACATGATAGCGTGCAAGTAATTAAGTTGTTGTATATAGTAATAGATTTGAAACTATTTTGTTAATTGGGGAAAAATGCAGGTTGTTTCATTGATGGAAAAGTTACAGGGGAAAGTGGTTGGAGGAGCAGGGGGAAATGAAAAATCTGACATCTTGGAGGTGGATGCTATG--A-CGATCCTTCAAGTGAAGGTGAAGGCTGAGGACCGGTTGAGCAGTGGCAGTGGTGGGAGCGCGGTGGTAGATGAGCATAGTCCACAGCTGGTGGACAGTGGGGACTCATATTTTCACACTGATCATGAGGAGTATCCAGGGCCTGGAGGATGCAATGTTCCTCCACCCATGGATGGTTTACAATCGGAGGAAGATGATGGTAGTGATGATCATGGCAGTTGCCATGGCTACTTCTCTAACGTCTTTGTGGCAGAAGAGCAGCACCATGAACAAGGAGAAGAGCCTATTGGATGGTTCTGGTCTTAATTGAATTTTAGAATATTATATTACAGTTTTTCTTATCTACGCGCGCTTTGTATGATGAAATAAG</genome_strand>
        <mrna_strand>TCTCTCTGATTTTGACTCCATTCGCAAAGATAACGATAAGCTCAAATCTGAG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTGTTTCATTAATGGAAAAGTTGCAGGGGAAAGTGGTTGGAGGAGCAGGGGTAAGTGAAAAATCTGATGTCTTGGAGGTAGATGCTATGACAGCGACCCTTCAAGTGAAGGTGAAGGCTGAGGACCGGTTGAGCAGTGGCAGTGGTGGGAGCGCTGTGGTAGATGAGCATAGTCCACAGCTGGTGGACAGTGGGGACTCATATTTTCACACTGATCATGAGGAGTATCCAGGGCCTGGAGGATGCAATGTTCCTCCACACATGGATGGTTTACAATCAGAGGAAGATGATGGTAGTGATG---ATGGCAGTTGCCATGGCTACTTCTCTAACGTCTTTGTGACAGAGGTGCAGCACCATGAAGAAGGAGAAGAGCCTATTGGATGGTTCTGGTCTTAATTGAATTTTAGAATAATGTA-TGCAGTTTTTCTCATCTACGCGCGCGCTTTGTATATAAATAAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0236E02-u8qcS/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E712774" ref_strand="+" ref_description="SGN-E712774 [FB05DB07]">
      <seq>ctctaatctgaggttgtttcattgatggaaaagttacaggggaaagtggttggaggagcagggggaaatgaaaaatctgacatcttggaggtggatgctatgacgatccttcaagtgaaggtgaaggctgaggaccggttgagcagtggcagtggtgggagcgcggtggtagatgagcatagtccacagctggtggacagtggggactcatattttcacactgatcatgaggagtatccagggcctggaggatgcaatgttcctccacccatggatggtttacaatcggaggaagatgatggtagtgatgatcatggcagttgccatggctacttctctaacgtctttgtggcagaagagcagcaccatgaacaaggagaagagcctattggatggttctggtcttaattgaattttagaatattatattacagtttttcttatctacgcgcgctttgtatgatgaaataagtgtcgtaattccaacttcttatttaaacatctattaatagnnaannaaaaataaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0236E02-u8qcS/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0236E02.1" temp_strand="+" temp_description="C02HBa0236E02.1  AC215430.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0236E02 sequenced_by:kribb upload_account_name:korea">
        <position start="104352" stop="105459"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="104661" g_stop="105156" g_length="496"/>
          <reference_exon_boundary r_type="cDNA" r_start="13" r_stop="508" r_length="496" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="519" polyA_stop="529"/>
      <MATCH_line gen_id="C02HBa0236E02.1" gen_strand="+" ref_id="SGN-E712774" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>496</cumulative_length_of_scored_exons>
        <coverage percentage="0.938" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0236E02.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E712774" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="104661" e_stop="105156"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTTGTTTCATTGATGGAAAAGTTACAGGGGAAAGTGGTTGGAGGAGCAGGGGGAAATGAAAAATCTGACATCTTGGAGGTGGATGCTATGACGATCCTTCAAGTGAAGGTGAAGGCTGAGGACCGGTTGAGCAGTGGCAGTGGTGGGAGCGCGGTGGTAGATGAGCATAGTCCACAGCTGGTGGACAGTGGGGACTCATATTTTCACACTGATCATGAGGAGTATCCAGGGCCTGGAGGATGCAATGTTCCTCCACCCATGGATGGTTTACAATCGGAGGAAGATGATGGTAGTGATGATCATGGCAGTTGCCATGGCTACTTCTCTAACGTCTTTGTGGCAGAAGAGCAGCACCATGAACAAGGAGAAGAGCCTATTGGATGGTTCTGGTCTTAATTGAATTTTAGAATATTATATTACAGTTTTTCTTATCTACGCGCGCTTTGTATGATGAAATAAGTGTCGTAATTCCAACTTCTTATTTAAACATCTATTA</genome_strand>
        <mrna_strand>GTTGTTTCATTGATGGAAAAGTTACAGGGGAAAGTGGTTGGAGGAGCAGGGGGAAATGAAAAATCTGACATCTTGGAGGTGGATGCTATGACGATCCTTCAAGTGAAGGTGAAGGCTGAGGACCGGTTGAGCAGTGGCAGTGGTGGGAGCGCGGTGGTAGATGAGCATAGTCCACAGCTGGTGGACAGTGGGGACTCATATTTTCACACTGATCATGAGGAGTATCCAGGGCCTGGAGGATGCAATGTTCCTCCACCCATGGATGGTTTACAATCGGAGGAAGATGATGGTAGTGATGATCATGGCAGTTGCCATGGCTACTTCTCTAACGTCTTTGTGGCAGAAGAGCAGCACCATGAACAAGGAGAAGAGCCTATTGGATGGTTCTGGTCTTAATTGAATTTTAGAATATTATATTACAGTTTTTCTTATCTACGCGCGCTTTGTATGATGAAATAAGTGTCGTAATTCCAACTTCTTATTTAAACATCTATTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0236E02-u8qcS/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E712125" ref_strand="+" ref_description="SGN-E712125 [FB03DH06]">
      <seq>ggagcagggggaaatgaaaaatctgacatcttggaggtggatgctatgacgatccttcaagtgaaggtgaaggctgaggaccggttgagcagtggcagtggtgggagcgcggtggtagatgagcatagtccacagctggtggacagtggggactcatattttcacactgatcatgaggagtatccagggcctggaggatgcaatgttcctccacccatggatggtttacaatcggaggaagatgatggtagtgatgatcatggcagttgccatggctacttctctaacgtctttgtggcagaagagcagcaccatgaacaaggagaagagcctattggatggttctggtcttaattgaattttagaatattatattacagtttttcttatctacgcgcgctttgtatgatgaaataagtgtcgtaattccaacttcttatttaaacatctattaatatgcttttgcagcttttaaaacaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0236E02-u8qcS/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0236E02.1" temp_strand="+" temp_description="C02HBa0236E02.1  AC215430.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0236E02 sequenced_by:kribb upload_account_name:korea">
        <position start="104403" stop="105476"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="104703" g_stop="105175" g_length="473"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="473" r_length="473" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="474" polyA_stop="490"/>
      <MATCH_line gen_id="C02HBa0236E02.1" gen_strand="+" ref_id="SGN-E712125" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>473</cumulative_length_of_scored_exons>
        <coverage percentage="0.965" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0236E02.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E712125" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="104703" e_stop="105175"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGAGCAGGGGGAAATGAAAAATCTGACATCTTGGAGGTGGATGCTATGACGATCCTTCAAGTGAAGGTGAAGGCTGAGGACCGGTTGAGCAGTGGCAGTGGTGGGAGCGCGGTGGTAGATGAGCATAGTCCACAGCTGGTGGACAGTGGGGACTCATATTTTCACACTGATCATGAGGAGTATCCAGGGCCTGGAGGATGCAATGTTCCTCCACCCATGGATGGTTTACAATCGGAGGAAGATGATGGTAGTGATGATCATGGCAGTTGCCATGGCTACTTCTCTAACGTCTTTGTGGCAGAAGAGCAGCACCATGAACAAGGAGAAGAGCCTATTGGATGGTTCTGGTCTTAATTGAATTTTAGAATATTATATTACAGTTTTTCTTATCTACGCGCGCTTTGTATGATGAAATAAGTGTCGTAATTCCAACTTCTTATTTAAACATCTATTAATATGCTTTTGCAGCTTTT</genome_strand>
        <mrna_strand>GGAGCAGGGGGAAATGAAAAATCTGACATCTTGGAGGTGGATGCTATGACGATCCTTCAAGTGAAGGTGAAGGCTGAGGACCGGTTGAGCAGTGGCAGTGGTGGGAGCGCGGTGGTAGATGAGCATAGTCCACAGCTGGTGGACAGTGGGGACTCATATTTTCACACTGATCATGAGGAGTATCCAGGGCCTGGAGGATGCAATGTTCCTCCACCCATGGATGGTTTACAATCGGAGGAAGATGATGGTAGTGATGATCATGGCAGTTGCCATGGCTACTTCTCTAACGTCTTTGTGGCAGAAGAGCAGCACCATGAACAAGGAGAAGAGCCTATTGGATGGTTCTGGTCTTAATTGAATTTTAGAATATTATATTACAGTTTTTCTTATCTACGCGCGCTTTGTATGATGAAATAAGTGTCGTAATTCCAACTTCTTATTTAAACATCTATTAATATGCTTTTGCAGCTTTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0236E02-u8qcS/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E219978" ref_strand="+" ref_description="SGN-E219978 [cLEL-24-E16](-)">
      <seq>agggggaaatgaaaaatctgacatcttggaggtggatgctatgacgatccttcaagtgaaggtgaaggctgaggaccggttgagcagtggcagtggtgggagcgcggtggtagatgagcatagtccacagctggtggacagtggggactcatattttcacactgatcatgaggagtatccagggcctggaggatgcaatgttcctccacccatggatggtttacaatcggaggaagatgatggtagtgatgatcatggcagttgccatggctacttctctaacgtctttgtggcagaagagcagcaccatgaacaaggagaagagcctattggatggttctggtcttaattgaattttagaatattatattacagtttttcttatctacgcgcgctttgtatgatgaaataagtgtcgtaattccaacttcttatttaaacatctattaatatgcttttgcagcttttattctcttaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0236E02-u8qcS/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0236E02.1" temp_strand="+" temp_description="C02HBa0236E02.1  AC215430.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0236E02 sequenced_by:kribb upload_account_name:korea">
        <position start="104408" stop="105485"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="104708" g_stop="105184" g_length="477"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="477" r_length="477" r_score="0.998"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="478" polyA_stop="493"/>
      <MATCH_line gen_id="C02HBa0236E02.1" gen_strand="+" ref_id="SGN-E219978" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>477</cumulative_length_of_scored_exons>
        <coverage percentage="0.968" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0236E02.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E219978" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="104708" e_stop="105184"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGGGGGAAATGAAAAATCTGACATCTTGGAGGTGGATGCTATGACGATCCTTCAAGTGAAGGTGAAGGCTGAGGACCGGTTGAGCAGTGGCAGTGGTGGGAGCGCGGTGGTAGATGAGCATAGTCCACAGCTGGTGGACAGTGGGGACTCATATTTTCACACTGATCATGAGGAGTATCCAGGGCCTGGAGGATGCAATGTTCCTCCACCCATGGATGGTTTACAATCGGAGGAAGATGATGGTAGTGATGATCATGGCAGTTGCCATGGCTACTTCTCTAACGTCTTTGTGGCAGAAGAGCAGCACCATGAACAAGGAGAAGAGCCTATTGGATGGTTCTGGTCTTAATTGAATTTTAGAATATTATATTACAGTTTTTCTTATCTACGCGCGCTTTGTATGATGAAATAAGTGTCGTAATTCCAACTTCTTATTTAAACATCTATTAATATGCTTTTGCAGCTTTTATTCTCTTG</genome_strand>
        <mrna_strand>AGGGGGAAATGAAAAATCTGACATCTTGGAGGTGGATGCTATGACGATCCTTCAAGTGAAGGTGAAGGCTGAGGACCGGTTGAGCAGTGGCAGTGGTGGGAGCGCGGTGGTAGATGAGCATAGTCCACAGCTGGTGGACAGTGGGGACTCATATTTTCACACTGATCATGAGGAGTATCCAGGGCCTGGAGGATGCAATGTTCCTCCACCCATGGATGGTTTACAATCGGAGGAAGATGATGGTAGTGATGATCATGGCAGTTGCCATGGCTACTTCTCTAACGTCTTTGTGGCAGAAGAGCAGCACCATGAACAAGGAGAAGAGCCTATTGGATGGTTCTGGTCTTAATTGAATTTTAGAATATTATATTACAGTTTTTCTTATCTACGCGCGCTTTGTATGATGAAATAAGTGTCGTAATTCCAACTTCTTATTTAAACATCTATTAATATGCTTTTGCAGCTTTTATTCTCTTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0236E02-u8qcS/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E416106" ref_strand="-" ref_description="SGN-E416106 [STM-22-D3]">
      <seq>gggtaagtgaaaaatctgatgtcttggaggtagatgctatgacagcgacccttcaagtgaaggtgaaggctgaggaccggttgagcagtggcagtggtgggagcgctgtggtagatgagcatagtccacagctggtggacagtggggactcatattttcacactgatcatgaggagtatccagggcctggaggatgcaatgttcctccacacatggatggtttacaatcagaggaagatgatggtagtgatgatggcagttgccatggctacttctctaacgtctttgtgacagaggtgcagcaccatgaagaaggagaagagcctattggatggttctggtcttaattgaattttagaataatgtattgcagtttttcttatctacgcgcgcgctttgtatgatgaaataagtgttgtaattcgaacttccaatttaaacatctataaaaaagcttttgcatcttgtaaaaaaaaaaatgt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0236E02-u8qcS/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0236E02.1" temp_strand="+" temp_description="C02HBa0236E02.1  AC215430.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0236E02 sequenced_by:kribb upload_account_name:korea">
        <position start="104443" stop="105476"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="104710" g_stop="105156" g_length="447"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="449" r_length="449" r_score="0.924"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="469" polyA_stop="480"/>
      <MATCH_line gen_id="C02HBa0236E02.1" gen_strand="+" ref_id="SGN-E416106" ref_strand="-">
        <total_alignment_score>0.924</total_alignment_score>
        <cumulative_length_of_scored_exons>447</cumulative_length_of_scored_exons>
        <coverage percentage="0.927" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0236E02.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E416106" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="104710" e_stop="105156"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGGGAAATGAAAAATCTGACATCTTGGAGGTGGATGCTATG--A-CGATCCTTCAAGTGAAGGTGAAGGCTGAGGACCGGTTGAGCAGTGGCAGTGGTGGGAGCGCGGTGGTAGATGAGCATAGTCCACAGCTGGTGGACAGTGGGGACTCATATTTTCACACTGATCATGAGGAGTATCCAGGGCCTGGAGGATGCAATGTTCCTCCACCCATGGATGGTTTACAATCGGAGGAAGATGATGGTAGTGATGATCATGGCAGTTGCCATGGCTACTTCTCTAACGTCTTTGTGGCAGAAGAGCAGCACCATGAACAAGGAGAAGAGCCTATTGGATGGTTCTGGTCTTAATTGAATTTTAGAATATTATATTACAGTTTTTCTTATCTA--CGCGCGCTTTGTATGATGAAATAAGTGTCGTAATTCCAACTTCTTATTTAAACATCTATTA</genome_strand>
        <mrna_strand>GGGTAAGTGAAAAATCTGATGTCTTGGAGGTAGATGCTATGACAGCGACCCTTCAAGTGAAGGTGAAGGCTGAGGACCGGTTGAGCAGTGGCAGTGGTGGGAGCGCTGTGGTAGATGAGCATAGTCCACAGCTGGTGGACAGTGGGGACTCATATTTTCACACTGATCATGAGGAGTATCCAGGGCCTGGAGGATGCAATGTTCCTCCACACATGGATGGTTTACAATCAGAGGAAGATGATGGTAGTGATG---ATGGCAGTTGCCATGGCTACTTCTCTAACGTCTTTGTGACAGAGGTGCAGCACCATGAAGAAGGAGAAGAGCCTATTGGATGGTTCTGGTCTTAATTGAATTTTAGAATAATGTATTGCAGTTTTTCTTATCTACGCGCGCGCTTTGTATGATGAAATAAGTGTTGTAATTCGAACTTCCAATTTAAACATCTATAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0236E02-u8qcS/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E586918" ref_strand="+" ref_description="SGN-E586918 [75754]">
      <seq>ggtaagtgaaatatctgatgtcttggaggtagatgctataacaacgacccttcaagtgaaggtgaaggctgaggaccggttgagcagtggcagtggtgggagcgcggtggtagatgagcatagtccacagctggtggacagtggggactcatattttcacactgatcatgaggagtatccagggcctggaggatgcaatgttcctccacccatggatggtttgcaatcagaggaagatgatggtagtgatgatggcagttgccatggctacttctctaacgtctttgtgacagaggagcagcaccatgaagaaggagaagagcctattggatggttctggtcttaattgaattttagaatattgtattacagtttttcttatctacgcgcgcactttgtatgatgaaataagtgttgtaatttgaacttccaatttaaacatctattaatatgcttttgcatcttttaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0236E02-u8qcS/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0236E02.1" temp_strand="+" temp_description="C02HBa0236E02.1  AC215430.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0236E02 sequenced_by:kribb upload_account_name:korea">
        <position start="104451" stop="105476"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="104711" g_stop="105175" g_length="465"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="467" r_length="467" r_score="0.929"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="468" polyA_stop="477"/>
      <MATCH_line gen_id="C02HBa0236E02.1" gen_strand="+" ref_id="SGN-E586918" ref_strand="+">
        <total_alignment_score>0.929</total_alignment_score>
        <cumulative_length_of_scored_exons>465</cumulative_length_of_scored_exons>
        <coverage percentage="0.975" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0236E02.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E586918" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="104711" e_stop="105175"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGGAAATGAAAAATCTGACATCTTGGAGGTGGATGCTAT--GA-CGATCCTTCAAGTGAAGGTGAAGGCTGAGGACCGGTTGAGCAGTGGCAGTGGTGGGAGCGCGGTGGTAGATGAGCATAGTCCACAGCTGGTGGACAGTGGGGACTCATATTTTCACACTGATCATGAGGAGTATCCAGGGCCTGGAGGATGCAATGTTCCTCCACCCATGGATGGTTTACAATCGGAGGAAGATGATGGTAGTGATGATCATGGCAGTTGCCATGGCTACTTCTCTAACGTCTTTGTGGCAGAAGAGCAGCACCATGAACAAGGAGAAGAGCCTATTGGATGGTTCTGGTCTTAATTGAATTTTAGAATATTATATTACAGTTTTTCTTATCTACGCGCG--CTTTGTATGATGAAATAAGTGTCGTAATTCCAACTTCTTATTTAAACATCTATTAATATGCTTTTGCAGCTTTT</genome_strand>
        <mrna_strand>GGTAAGTGAAATATCTGATGTCTTGGAGGTAGATGCTATAACAACGACCCTTCAAGTGAAGGTGAAGGCTGAGGACCGGTTGAGCAGTGGCAGTGGTGGGAGCGCGGTGGTAGATGAGCATAGTCCACAGCTGGTGGACAGTGGGGACTCATATTTTCACACTGATCATGAGGAGTATCCAGGGCCTGGAGGATGCAATGTTCCTCCACCCATGGATGGTTTGCAATCAGAGGAAGATGATGGTAGTGATG---ATGGCAGTTGCCATGGCTACTTCTCTAACGTCTTTGTGACAGAGGAGCAGCACCATGAAGAAGGAGAAGAGCCTATTGGATGGTTCTGGTCTTAATTGAATTTTAGAATATTGTATTACAGTTTTTCTTATCTACGCGCGCACTTTGTATGATGAAATAAGTGTTGTAATTTGAACTTCCAATTTAAACATCTATTAATATGCTTTTGCATCTTTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0236E02-u8qcS/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E353979" ref_strand="+" ref_description="SGN-E353979 [cLHT-6-E19](-)">
      <seq>gtggtaaatgagcatagtccccagctggtggacagtggggactcatattttcacactgaacatgaggagtatccagggcctggaggatgcaatgttcctccacccatggatggtttacaatcagaggaagatgatggtagtgatgatcatggcagttgccatggaaacttctctaacgtctttgtggcagaagagcagcgccatgaacaaggagaagagcctattggatggttctggtctaaattgaattttagaatattatattacagtttttcttatctacgcgcgctttgtatgatgaaataagtgttgtaattcaaacttcttatttaaacatctattaatatgcttttgcagctttttaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0236E02-u8qcS/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0236E02.1" temp_strand="+" temp_description="C02HBa0236E02.1  AC215430.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0236E02 sequenced_by:kribb upload_account_name:korea">
        <position start="104514" stop="105475"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="104814" g_stop="105175" g_length="362"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="362" r_length="362" r_score="0.972"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="364" polyA_stop="374"/>
      <MATCH_line gen_id="C02HBa0236E02.1" gen_strand="+" ref_id="SGN-E353979" ref_strand="+">
        <total_alignment_score>0.972</total_alignment_score>
        <cumulative_length_of_scored_exons>362</cumulative_length_of_scored_exons>
        <coverage percentage="0.968" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0236E02.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E353979" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="104814" e_stop="105175"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTGGTAGATGAGCATAGTCCACAGCTGGTGGACAGTGGGGACTCATATTTTCACACTGATCATGAGGAGTATCCAGGGCCTGGAGGATGCAATGTTCCTCCACCCATGGATGGTTTACAATCGGAGGAAGATGATGGTAGTGATGATCATGGCAGTTGCCATGGCTACTTCTCTAACGTCTTTGTGGCAGAAGAGCAGCACCATGAACAAGGAGAAGAGCCTATTGGATGGTTCTGGTCTTAATTGAATTTTAGAATATTATATTACAGTTTTTCTTATCTACGCGCGCTTTGTATGATGAAATAAGTGTCGTAATTCCAACTTCTTATTTAAACATCTATTAATATGCTTTTGCAGCTTTT</genome_strand>
        <mrna_strand>GTGGTAAATGAGCATAGTCCCCAGCTGGTGGACAGTGGGGACTCATATTTTCACACTGAACATGAGGAGTATCCAGGGCCTGGAGGATGCAATGTTCCTCCACCCATGGATGGTTTACAATCAGAGGAAGATGATGGTAGTGATGATCATGGCAGTTGCCATGGAAACTTCTCTAACGTCTTTGTGGCAGAAGAGCAGCGCCATGAACAAGGAGAAGAGCCTATTGGATGGTTCTGGTCTAAATTGAATTTTAGAATATTATATTACAGTTTTTCTTATCTACGCGCGCTTTGTATGATGAAATAAGTGTTGTAATTCAAACTTCTTATTTAAACATCTATTAATATGCTTTTGCAGCTTTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0236E02-u8qcS/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E219738" ref_strand="+" ref_description="SGN-E219738 [cLEL-24-E16](-)">
      <seq>agcatagtccacagctggtggacagtggggactcatattttcacactgatcatgaggagtatccagggcctggaggatgcaatgttcctccacccatggatggtttacaatcggaggaagatgatggtagtgatgatcatggcagttgccatggctacttctctaacgtctttgtggcagaagagcagcaccatgaacaaggagaagagcctattggatggttctggtcttaattgaattttagaatattatattacagtttttcttatctacgcgcgctttgtatgatgaaataagtgtcgtaattccaacttcttatttaaacatctattaatatgcttttgcagcttttattctcttaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0236E02-u8qcS/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0236E02.1" temp_strand="+" temp_description="C02HBa0236E02.1  AC215430.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0236E02 sequenced_by:kribb upload_account_name:korea">
        <position start="104524" stop="105485"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="104824" g_stop="105184" g_length="361"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="361" r_length="361" r_score="0.997"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="362" polyA_stop="377"/>
      <MATCH_line gen_id="C02HBa0236E02.1" gen_strand="+" ref_id="SGN-E219738" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>361</cumulative_length_of_scored_exons>
        <coverage percentage="0.958" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0236E02.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E219738" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="104824" e_stop="105184"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGCATAGTCCACAGCTGGTGGACAGTGGGGACTCATATTTTCACACTGATCATGAGGAGTATCCAGGGCCTGGAGGATGCAATGTTCCTCCACCCATGGATGGTTTACAATCGGAGGAAGATGATGGTAGTGATGATCATGGCAGTTGCCATGGCTACTTCTCTAACGTCTTTGTGGCAGAAGAGCAGCACCATGAACAAGGAGAAGAGCCTATTGGATGGTTCTGGTCTTAATTGAATTTTAGAATATTATATTACAGTTTTTCTTATCTACGCGCGCTTTGTATGATGAAATAAGTGTCGTAATTCCAACTTCTTATTTAAACATCTATTAATATGCTTTTGCAGCTTTTATTCTCTTG</genome_strand>
        <mrna_strand>AGCATAGTCCACAGCTGGTGGACAGTGGGGACTCATATTTTCACACTGATCATGAGGAGTATCCAGGGCCTGGAGGATGCAATGTTCCTCCACCCATGGATGGTTTACAATCGGAGGAAGATGATGGTAGTGATGATCATGGCAGTTGCCATGGCTACTTCTCTAACGTCTTTGTGGCAGAAGAGCAGCACCATGAACAAGGAGAAGAGCCTATTGGATGGTTCTGGTCTTAATTGAATTTTAGAATATTATATTACAGTTTTTCTTATCTACGCGCGCTTTGTATGATGAAATAAGTGTCGTAATTCCAACTTCTTATTTAAACATCTATTAATATGCTTTTGCAGCTTTTATTCTCTTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0236E02-u8qcS/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E224406" ref_strand="+" ref_description="SGN-E224406 [cLEL-27-K5](-)">
      <seq>gtggggactcatattttcacactgatcatgaggagtatccagggcctggaggatgcaatgttcctccacccatggatggtttacaatcggaggaagatgatggtagtgatgatcatggcagttgccatggctacttctctaacgtctttgtggcagaagagcagcaccatgaacaaggagaagagcctattggatggttctggtcttaattgaattttagaatattatattacagtttttcttatctacgcgcgctttgtatgatgaaataagtgtcgtaattccaacttcttatttaaacatctattaatatgcttttgcagcttttattctcttgatttaaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0236E02-u8qcS/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0236E02.1" temp_strand="+" temp_description="C02HBa0236E02.1  AC215430.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0236E02 sequenced_by:kribb upload_account_name:korea">
        <position start="104548" stop="105489"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="104848" g_stop="105189" g_length="342"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="342" r_length="342" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="343" polyA_stop="361"/>
      <MATCH_line gen_id="C02HBa0236E02.1" gen_strand="+" ref_id="SGN-E224406" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>342</cumulative_length_of_scored_exons>
        <coverage percentage="0.947" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0236E02.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E224406" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="104848" e_stop="105189"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTGGGGACTCATATTTTCACACTGATCATGAGGAGTATCCAGGGCCTGGAGGATGCAATGTTCCTCCACCCATGGATGGTTTACAATCGGAGGAAGATGATGGTAGTGATGATCATGGCAGTTGCCATGGCTACTTCTCTAACGTCTTTGTGGCAGAAGAGCAGCACCATGAACAAGGAGAAGAGCCTATTGGATGGTTCTGGTCTTAATTGAATTTTAGAATATTATATTACAGTTTTTCTTATCTACGCGCGCTTTGTATGATGAAATAAGTGTCGTAATTCCAACTTCTTATTTAAACATCTATTAATATGCTTTTGCAGCTTTTATTCTCTTGATTTA</genome_strand>
        <mrna_strand>GTGGGGACTCATATTTTCACACTGATCATGAGGAGTATCCAGGGCCTGGAGGATGCAATGTTCCTCCACCCATGGATGGTTTACAATCGGAGGAAGATGATGGTAGTGATGATCATGGCAGTTGCCATGGCTACTTCTCTAACGTCTTTGTGGCAGAAGAGCAGCACCATGAACAAGGAGAAGAGCCTATTGGATGGTTCTGGTCTTAATTGAATTTTAGAATATTATATTACAGTTTTTCTTATCTACGCGCGCTTTGTATGATGAAATAAGTGTCGTAATTCCAACTTCTTATTTAAACATCTATTAATATGCTTTTGCAGCTTTTATTCTCTTGATTTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0236E02-u8qcS/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E308350" ref_strand="+" ref_description="SGN-E308350 [cLEY-25-I11]">
      <seq>agagagaggaagatgatggtagtgatgatcatggcagttgccatggctacttctctaacgtctttgtggcagaagagcagcaccatgaacaaggagaagagcctattggatggttctggtcttaattgaattttagaatattatattacagtttttcttatctacgcgcgctttgtatgatgaaataagtgtcgtaattccaacttcttatttaaacatctattaatatgcttttgcagcttttattcaaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0236E02-u8qcS/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0236E02.1" temp_strand="+" temp_description="C02HBa0236E02.1  AC215430.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0236E02 sequenced_by:kribb upload_account_name:korea">
        <position start="104637" stop="105479"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="104932" g_stop="105179" g_length="248"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="248" r_length="248" r_score="0.984"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="249" polyA_stop="268"/>
      <MATCH_line gen_id="C02HBa0236E02.1" gen_strand="+" ref_id="SGN-E308350" ref_strand="+">
        <total_alignment_score>0.984</total_alignment_score>
        <cumulative_length_of_scored_exons>248</cumulative_length_of_scored_exons>
        <coverage percentage="0.925" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0236E02.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E308350" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="104932" e_stop="105179"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AATCGGAGGAAGATGATGGTAGTGATGATCATGGCAGTTGCCATGGCTACTTCTCTAACGTCTTTGTGGCAGAAGAGCAGCACCATGAACAAGGAGAAGAGCCTATTGGATGGTTCTGGTCTTAATTGAATTTTAGAATATTATATTACAGTTTTTCTTATCTACGCGCGCTTTGTATGATGAAATAAGTGTCGTAATTCCAACTTCTTATTTAAACATCTATTAATATGCTTTTGCAGCTTTTATTC</genome_strand>
        <mrna_strand>AGAGAGAGGAAGATGATGGTAGTGATGATCATGGCAGTTGCCATGGCTACTTCTCTAACGTCTTTGTGGCAGAAGAGCAGCACCATGAACAAGGAGAAGAGCCTATTGGATGGTTCTGGTCTTAATTGAATTTTAGAATATTATATTACAGTTTTTCTTATCTACGCGCGCTTTGTATGATGAAATAAGTGTCGTAATTCCAACTTCTTATTTAAACATCTATTAATATGCTTTTGCAGCTTTTATTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0236E02-u8qcS/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E416974" ref_strand="+" ref_description="SGN-E416974 [STM-24-O19]">
      <seq>ccgtgctgccggcccaattttggtgtcaaatagcgccgtctcattctactgttctcgccggttaccaaatatctctttctactctctctgtctactactcttcactcactatacacatcaaatcctccattgtttaataggttaaaatctgcttgtctctaaagaggagagttcaaaatcatttcgatttgctgctttacccgatcatttcaccgcatttttctgaatctactccatatatgatgtctgaggaagctgctagagatctcattgcactacctgaagctgggatgaacaatgagatccccagtaatgggggtgttccggtgataggggttgagagcgttgatataaattcaaaagataaggaaagagaaaagcctgccttactggttggaccttgccttaatggagacagtaaggtgaatactggggcagaggtgggaaattcagaagtggaatacatagaatctgagaatttgaatgatgtagaagatgttgacacaagtcttaaggtaatgattcctgatatagtttgatgtttcattgtagtattttgcatctctgtttgccttctttatattggttacaaaagtctcttttcaatgtctttgcctctcctttttcatttgtagacactgttgactgggctagaatccaaggactggatttta</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0236E02-u8qcS/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0236E02.1" temp_strand="+" temp_description="C02HBa0236E02.1  AC215430.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0236E02 sequenced_by:kribb upload_account_name:korea">
        <position start="108250" stop="110976"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="108550" g_stop="108774" g_length="225"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="225" r_length="225" r_score="0.951"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="108775" i_stop="110227" i_length="1453">
            <donor d_prob="0.999" d_score="0.98"/>
            <acceptor a_prob="0.912" a_score="0.92"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="110228" g_stop="110676" g_length="449"/>
          <reference_exon_boundary r_type="cDNA" r_start="226" r_stop="674" r_length="449" r_score="0.949"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0236E02.1" gen_strand="+" ref_id="SGN-E416974" ref_strand="+">
        <total_alignment_score>0.950</total_alignment_score>
        <cumulative_length_of_scored_exons>674</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0236E02.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E416974" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="108550" e_stop="108774"/>
          <exon e_start="110228" e_stop="110676"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCGTGCTGCCGGCCCAATTTTGGTGTGAAATAGCGCCGTCTCATTCTACTGTTCTCGCCGGTTA-CAAATATCTCTTTTCTACTCTCTCTGTCTATTACTCTTCACTCACTATACACATAAAATCCTCCATTGTTTAGTAGGTTAAAATCTGCTTGTCGTTGAAGAGGAGAGTTCAAAATCATTTCGATTTGCTGCTTTACCCGATCATTTCACCGCATTTTCCTGGTATGCTCAATCTTCGCTTACTCTGTTTATTTATTAGTTTATAGGTATGTTAAAGAGGTAGTATTGTACATTCGAATTACTAAAGCCCCTAAACATTGCATTTTTTGTAAATCGCTGATGGAGTAATCAAGTTGTATAGGTTTGTTGATTGTATTTGCTTTGAAGTTGCTAACTACGATCTGCGAAGGTTATTCTCTCTGAGATCTTGGCTATTCTACTTTAATACGTTTTGGATTGTTTTACTTTGTAGATAGTGCTTGTTGGAGTTGATTGTTCTGATCCTGTAATGTAGATGCGATTTTTTTGCCGTTACTATTATTAATACGAGGAATTTTTCCGTTAGTGATTATTTGTAAATAGTTTAATGGAGTTTGATGTGTCTAATCATTGTTATAATAGTGATTCGAAGTGCTTTGTTGCTAACTTGGATGGACAAAAATAAGCTAACTATTTCATTTGGGCTTAACTTAGGGTTTCGTTCTTTTTCTTAAAAGGTTTCTGCAGCATGATTTGAGTAAAAACTTGCGTGATTTGTACATTGGCAACATCTATTCTACTTAATTTACTGGCTGAAGGATTTTCACACCCAATGCTACCAATTGAAAACAAAGTAGTGTTGTCAAACCTTCAATCTTGAAGTTCATCAAATAAGAAATTGGATTGTTCATTCAGAAATATTAGATCACTATGTTACTTGTTCCTTTTTTTTCTTCTCAAAGGCATTAGATTATTGTGTGCGCTTTCCAGTTCTCCAGCCAATGCTACATCATTTACTTGATAATGTGAGTCCCCTAGTGGTGTCATGCCAGCTTAGGTACCTTGACTAATCCACTAGGTAACATTCTACACTGAAGCAAATCAGCTCTTTCCAGGTGTTATAACTGGTAGTTTGAACCTGGAATCTTCAGGTTGATACTTCTATGCCTAAACTATTCAGCTATCTTCAGGTGTTATAACTGGTAGTTTGAACCTGGAAGCCTTAATAGCTGTATTCTCTAGGATACTGTTCCGCTAAGAAAATTACAATTATCAGTGAAGCCTTGTGAGATTGATATTATCTTCCATCGATCATAAACAAAAACTTCAGTAGAAGAACTAAGTATTGATATGGAAAATTAGGTAAGGGACCTTGAAAGAAAAAAAAGTAAGTTACTGGAATGACCACAAATATGAAAAGGCATTACTGAGGTCCAAAAGTTAGTTCTAAAATCCCCGGAGTTCAAATATCTGTTTATTATGTTGTTTTCTCTTCTCCAGAGTTCACATATCAGTTTATTATATTGTTTTCTCCTCTTCTCTGGAGTTCACATATCTGTTTATTATGTTGCATTCTCCTCTTCTCCGGAGTTCACATATCTGTTTAGCTTTCTTCTCTTCTATTCGACCGGAAATGATTTCTTAAGTGCATTGCTGACGTGGCTCATAAAAACCCTTTACACTGCTGGTATTTCAG-ATCTAATCCATATATGATGTCTGAGGAAGCTGCTAGAGATCTCATTCCACTACCTGAAGCTGGGATGAACAATGAGATCCCCAGTAATGGGAGTGTTCCAGCAATAAGGGTTGAGAGCATTGATAAAAATTCAAAAGATAAGGAAAGAGAAAATCCTGCCTTACTGGTTGGACCTTGCCTTAATGGAGACGGTAAGGTGAATACTGGGGCAGAGGTGGGAAATTCTGAAGTGGAATACATAGAATCTGAGAATTTGAATGATGTAGAAGATGTTGACACAAGTCTCAAGGTAATGATTCCTGATATAGTTTGATGTTTCATTTTAGTATTTTGCATCTCGGTTTTGCTTCTTTATATTGGTTTACAAAAGTCTCTTTTCAATGTCTTTGCCTCTCCTTTTTCATTTGTAGACACTGTTGACTGGGCTTGACTCCAAGGACTGGGTTTTA</genome_strand>
        <mrna_strand>CCGTGCTGCCGGCCCAATTTTGGTGTCAAATAGCGCCGTCTCATTCTACTGTTCTCGCCGGTTACCAAATATCTC-TTTCTACTCTCTCTGTCTACTACTCTTCACTCACTATACACATCAAATCCTCCATTGTTTAATAGGTTAAAATCTGCTTGTCTCTAAAGAGGAGAGTTCAAAATCATTTCGATTTGCTGCTTTACCCGATCATTTCACCGCATTTTTCTG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AATCTACTCCATATATGATGTCTGAGGAAGCTGCTAGAGATCTCATTGCACTACCTGAAGCTGGGATGAACAATGAGATCCCCAGTAATGGGGGTGTTCCGGTGATAGGGGTTGAGAGCGTTGATATAAATTCAAAAGATAAGGAAAGAGAAAAGCCTGCCTTACTGGTTGGACCTTGCCTTAATGGAGACAGTAAGGTGAATACTGGGGCAGAGGTGGGAAATTCAGAAGTGGAATACATAGAATCTGAGAATTTGAATGATGTAGAAGATGTTGACACAAGTCTTAAGGTAATGATTCCTGATATAGTTTGATGTTTCATTGTAGTATTTTGCATCTCTGTTTGCCTTCTTTATATTGG-TTACAAAAGTCTCTTTTCAATGTCTTTGCCTCTCCTTTTTCATTTGTAGACACTGTTGACTGGGCTAGAATCCAAGGACTGGATTTTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0236E02-u8qcS/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E439974" ref_strand="+" ref_description="SGN-E439974 [cSTA-14-B13]">
      <seq>ccgtgctgccggcccaattttggtgtcaaatagcgccgtctcattctactgttctcgccggttacaaatatctctttctactctctctgtctactactcttcactcactatacacatcaaatcctccattgtttaataagttaaaatctgcttgtctctaaagaggagagttcaaaatcatttcgatttgctgctttacccgatcatttcaccgcatttttctgaatctactccatatatgatgtctgangaagctgctagagatctcattgcactacctgaagctgggatgaacaatgagatccccagtaatgggggtgttccggtgataggggttgagagcgttgatataaattcaaaagataaggaaagagaaaagcctgccttactggttggaccttgccttaat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0236E02-u8qcS/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0236E02.1" temp_strand="+" temp_description="C02HBa0236E02.1  AC215430.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0236E02 sequenced_by:kribb upload_account_name:korea">
        <position start="108250" stop="110711"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="108550" g_stop="108774" g_length="225"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="224" r_length="224" r_score="0.956"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="108775" i_stop="110227" i_length="1453">
            <donor d_prob="0.999" d_score="0.98"/>
            <acceptor a_prob="0.912" a_score="0.90"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="110228" g_stop="110411" g_length="184"/>
          <reference_exon_boundary r_type="cDNA" r_start="225" r_stop="409" r_length="185" r_score="0.929"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0236E02.1" gen_strand="+" ref_id="SGN-E439974" ref_strand="+">
        <total_alignment_score>0.944</total_alignment_score>
        <cumulative_length_of_scored_exons>409</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0236E02.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E439974" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="108550" e_stop="108774"/>
          <exon e_start="110228" e_stop="110411"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCGTGCTGCCGGCCCAATTTTGGTGTGAAATAGCGCCGTCTCATTCTACTGTTCTCGCCGGTTACAAATATCTCTTTTCTACTCTCTCTGTCTATTACTCTTCACTCACTATACACATAAAATCCTCCATTGTTTAGTAGGTTAAAATCTGCTTGTCGTTGAAGAGGAGAGTTCAAAATCATTTCGATTTGCTGCTTTACCCGATCATTTCACCGCATTTTCCTGGTATGCTCAATCTTCGCTTACTCTGTTTATTTATTAGTTTATAGGTATGTTAAAGAGGTAGTATTGTACATTCGAATTACTAAAGCCCCTAAACATTGCATTTTTTGTAAATCGCTGATGGAGTAATCAAGTTGTATAGGTTTGTTGATTGTATTTGCTTTGAAGTTGCTAACTACGATCTGCGAAGGTTATTCTCTCTGAGATCTTGGCTATTCTACTTTAATACGTTTTGGATTGTTTTACTTTGTAGATAGTGCTTGTTGGAGTTGATTGTTCTGATCCTGTAATGTAGATGCGATTTTTTTGCCGTTACTATTATTAATACGAGGAATTTTTCCGTTAGTGATTATTTGTAAATAGTTTAATGGAGTTTGATGTGTCTAATCATTGTTATAATAGTGATTCGAAGTGCTTTGTTGCTAACTTGGATGGACAAAAATAAGCTAACTATTTCATTTGGGCTTAACTTAGGGTTTCGTTCTTTTTCTTAAAAGGTTTCTGCAGCATGATTTGAGTAAAAACTTGCGTGATTTGTACATTGGCAACATCTATTCTACTTAATTTACTGGCTGAAGGATTTTCACACCCAATGCTACCAATTGAAAACAAAGTAGTGTTGTCAAACCTTCAATCTTGAAGTTCATCAAATAAGAAATTGGATTGTTCATTCAGAAATATTAGATCACTATGTTACTTGTTCCTTTTTTTTCTTCTCAAAGGCATTAGATTATTGTGTGCGCTTTCCAGTTCTCCAGCCAATGCTACATCATTTACTTGATAATGTGAGTCCCCTAGTGGTGTCATGCCAGCTTAGGTACCTTGACTAATCCACTAGGTAACATTCTACACTGAAGCAAATCAGCTCTTTCCAGGTGTTATAACTGGTAGTTTGAACCTGGAATCTTCAGGTTGATACTTCTATGCCTAAACTATTCAGCTATCTTCAGGTGTTATAACTGGTAGTTTGAACCTGGAAGCCTTAATAGCTGTATTCTCTAGGATACTGTTCCGCTAAGAAAATTACAATTATCAGTGAAGCCTTGTGAGATTGATATTATCTTCCATCGATCATAAACAAAAACTTCAGTAGAAGAACTAAGTATTGATATGGAAAATTAGGTAAGGGACCTTGAAAGAAAAAAAAGTAAGTTACTGGAATGACCACAAATATGAAAAGGCATTACTGAGGTCCAAAAGTTAGTTCTAAAATCCCCGGAGTTCAAATATCTGTTTATTATGTTGTTTTCTCTTCTCCAGAGTTCACATATCAGTTTATTATATTGTTTTCTCCTCTTCTCTGGAGTTCACATATCTGTTTATTATGTTGCATTCTCCTCTTCTCCGGAGTTCACATATCTGTTTAGCTTTCTTCTCTTCTATTCGACCGGAAATGATTTCTTAAGTGCATTGCTGACGTGGCTCATAAAAACCCTTTACACTGCTGGTATTTCAG-ATCTAATCCATATATGATGTCTGAGGAAGCTGCTAGAGATCTCATTCCACTACCTGAAGCTGGGATGAACAATGAGATCCCCAGTAATGGGAGTGTTCCAGCAATAAGGGTTGAGAGCATTGATAAAAATTCAAAAGATAAGGAAAGAGAAAATCCTGCCTTACTGGTTGGACCTTGCCTTAAT</genome_strand>
        <mrna_strand>CCGTGCTGCCGGCCCAATTTTGGTGTCAAATAGCGCCGTCTCATTCTACTGTTCTCGCCGGTTACAAATATCTCTTT-CTACTCTCTCTGTCTACTACTCTTCACTCACTATACACATCAAATCCTCCATTGTTTAATAAGTTAAAATCTGCTTGTCTCTAAAGAGGAGAGTTCAAAATCATTTCGATTTGCTGCTTTACCCGATCATTTCACCGCATTTTTCTG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AATCTACTCCATATATGATGTCTGANGAAGCTGCTAGAGATCTCATTGCACTACCTGAAGCTGGGATGAACAATGAGATCCCCAGTAATGGGGGTGTTCCGGTGATAGGGGTTGAGAGCGTTGATATAAATTCAAAAGATAAGGAAAGAGAAAAGCCTGCCTTACTGGTTGGACCTTGCCTTAAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0236E02-u8qcS/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E375974" ref_strand="+" ref_description="SGN-E375974 [TUS-40-I16]">
      <seq>cgtgctgccggcccaattttggtgtgaaatagcgccgtctcattctactgttctcgccggttacaaatatctcttttctactctctctgtctattactcttcactcactatacacataaaatcctccattgtttagtaggttaaaatctgcttgtcgttgaagaggagagttcaaaatcatttcgatttgctgctttacccgatcatttcaccgcattttcctgatctaatccatatatgatgtctgaggaagctgctagagatctcattccactacctgaagctgggatgaacaatgagatccccagtaatgggagtgttccagcaataagggttgagagcattgataaaaattcaaaagataaggaaagagaaaatcctgccttactggttggaccttgccttaatggagacggtaaggtgaatactggggcagaggtgggaaattctgaagtggaatacatagaatctgagaatttgaatgatgtagaagatgttgacacaagtctcaagacactgttgactgggcttgactccaaggactgggttttagtctgtgaggcactcaatgacgttcggcgtctgtccctatttcacaaagaagcaatggttgatatgttgagaaatgtgatctcccttgttgtgaaatctt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0236E02-u8qcS/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0236E02.1" temp_strand="+" temp_description="C02HBa0236E02.1  AC215430.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0236E02 sequenced_by:kribb upload_account_name:korea">
        <position start="108251" stop="111210"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="108551" g_stop="108774" g_length="224"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="224" r_length="224" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="108775" i_stop="110227" i_length="1453">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.912" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="110228" g_stop="110516" g_length="289"/>
          <reference_exon_boundary r_type="cDNA" r_start="225" r_stop="513" r_length="289" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="110517" i_stop="110637" i_length="121">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.985" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="110638" g_stop="110744" g_length="107"/>
          <reference_exon_boundary r_type="cDNA" r_start="514" r_stop="620" r_length="107" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="110745" i_stop="110878" i_length="134">
            <donor d_prob="0.878" d_score="1.00"/>
            <acceptor a_prob="0.849" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="110879" g_stop="110910" g_length="32"/>
          <reference_exon_boundary r_type="cDNA" r_start="621" r_stop="652" r_length="32" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0236E02.1" gen_strand="+" ref_id="SGN-E375974" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>652</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0236E02.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E375974" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="108551" e_stop="108774"/>
          <exon e_start="110228" e_stop="110516"/>
          <exon e_start="110638" e_stop="110744"/>
          <exon e_start="110879" e_stop="110910"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CGTGCTGCCGGCCCAATTTTGGTGTGAAATAGCGCCGTCTCATTCTACTGTTCTCGCCGGTTACAAATATCTCTTTTCTACTCTCTCTGTCTATTACTCTTCACTCACTATACACATAAAATCCTCCATTGTTTAGTAGGTTAAAATCTGCTTGTCGTTGAAGAGGAGAGTTCAAAATCATTTCGATTTGCTGCTTTACCCGATCATTTCACCGCATTTTCCTGGTATGCTCAATCTTCGCTTACTCTGTTTATTTATTAGTTTATAGGTATGTTAAAGAGGTAGTATTGTACATTCGAATTACTAAAGCCCCTAAACATTGCATTTTTTGTAAATCGCTGATGGAGTAATCAAGTTGTATAGGTTTGTTGATTGTATTTGCTTTGAAGTTGCTAACTACGATCTGCGAAGGTTATTCTCTCTGAGATCTTGGCTATTCTACTTTAATACGTTTTGGATTGTTTTACTTTGTAGATAGTGCTTGTTGGAGTTGATTGTTCTGATCCTGTAATGTAGATGCGATTTTTTTGCCGTTACTATTATTAATACGAGGAATTTTTCCGTTAGTGATTATTTGTAAATAGTTTAATGGAGTTTGATGTGTCTAATCATTGTTATAATAGTGATTCGAAGTGCTTTGTTGCTAACTTGGATGGACAAAAATAAGCTAACTATTTCATTTGGGCTTAACTTAGGGTTTCGTTCTTTTTCTTAAAAGGTTTCTGCAGCATGATTTGAGTAAAAACTTGCGTGATTTGTACATTGGCAACATCTATTCTACTTAATTTACTGGCTGAAGGATTTTCACACCCAATGCTACCAATTGAAAACAAAGTAGTGTTGTCAAACCTTCAATCTTGAAGTTCATCAAATAAGAAATTGGATTGTTCATTCAGAAATATTAGATCACTATGTTACTTGTTCCTTTTTTTTCTTCTCAAAGGCATTAGATTATTGTGTGCGCTTTCCAGTTCTCCAGCCAATGCTACATCATTTACTTGATAATGTGAGTCCCCTAGTGGTGTCATGCCAGCTTAGGTACCTTGACTAATCCACTAGGTAACATTCTACACTGAAGCAAATCAGCTCTTTCCAGGTGTTATAACTGGTAGTTTGAACCTGGAATCTTCAGGTTGATACTTCTATGCCTAAACTATTCAGCTATCTTCAGGTGTTATAACTGGTAGTTTGAACCTGGAAGCCTTAATAGCTGTATTCTCTAGGATACTGTTCCGCTAAGAAAATTACAATTATCAGTGAAGCCTTGTGAGATTGATATTATCTTCCATCGATCATAAACAAAAACTTCAGTAGAAGAACTAAGTATTGATATGGAAAATTAGGTAAGGGACCTTGAAAGAAAAAAAAGTAAGTTACTGGAATGACCACAAATATGAAAAGGCATTACTGAGGTCCAAAAGTTAGTTCTAAAATCCCCGGAGTTCAAATATCTGTTTATTATGTTGTTTTCTCTTCTCCAGAGTTCACATATCAGTTTATTATATTGTTTTCTCCTCTTCTCTGGAGTTCACATATCTGTTTATTATGTTGCATTCTCCTCTTCTCCGGAGTTCACATATCTGTTTAGCTTTCTTCTCTTCTATTCGACCGGAAATGATTTCTTAAGTGCATTGCTGACGTGGCTCATAAAAACCCTTTACACTGCTGGTATTTCAGATCTAATCCATATATGATGTCTGAGGAAGCTGCTAGAGATCTCATTCCACTACCTGAAGCTGGGATGAACAATGAGATCCCCAGTAATGGGAGTGTTCCAGCAATAAGGGTTGAGAGCATTGATAAAAATTCAAAAGATAAGGAAAGAGAAAATCCTGCCTTACTGGTTGGACCTTGCCTTAATGGAGACGGTAAGGTGAATACTGGGGCAGAGGTGGGAAATTCTGAAGTGGAATACATAGAATCTGAGAATTTGAATGATGTAGAAGATGTTGACACAAGTCTCAAGGTAATGATTCCTGATATAGTTTGATGTTTCATTTTAGTATTTTGCATCTCGGTTTTGCTTCTTTATATTGGTTTACAAAAGTCTCTTTTCAATGTCTTTGCCTCTCCTTTTTCATTTGTAGACACTGTTGACTGGGCTTGACTCCAAGGACTGGGTTTTAGTCTGTGAGGCACTCAATGACGTTCGGCGTCTGTCCCTATTTCACAAAGAAGCAATGGTTGATATGTTGTAAGTCTTTGTCACCTAGGATATAACTTGAAAGATGTTTGATCATGATGTTCTAGCTGGTTAGACATATCTTTGTGTATGCTCCCCTTTTGTTCTGTCTGGTCTTACTTATGCTTATTACTTAAAATGAGCAGGAGAAATGTGATCTCCCTTGTTGTGAAATCTT</genome_strand>
        <mrna_strand>CGTGCTGCCGGCCCAATTTTGGTGTGAAATAGCGCCGTCTCATTCTACTGTTCTCGCCGGTTACAAATATCTCTTTTCTACTCTCTCTGTCTATTACTCTTCACTCACTATACACATAAAATCCTCCATTGTTTAGTAGGTTAAAATCTGCTTGTCGTTGAAGAGGAGAGTTCAAAATCATTTCGATTTGCTGCTTTACCCGATCATTTCACCGCATTTTCCTG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATCTAATCCATATATGATGTCTGAGGAAGCTGCTAGAGATCTCATTCCACTACCTGAAGCTGGGATGAACAATGAGATCCCCAGTAATGGGAGTGTTCCAGCAATAAGGGTTGAGAGCATTGATAAAAATTCAAAAGATAAGGAAAGAGAAAATCCTGCCTTACTGGTTGGACCTTGCCTTAATGGAGACGGTAAGGTGAATACTGGGGCAGAGGTGGGAAATTCTGAAGTGGAATACATAGAATCTGAGAATTTGAATGATGTAGAAGATGTTGACACAAGTCTCAAG.........................................................................................................................ACACTGTTGACTGGGCTTGACTCCAAGGACTGGGTTTTAGTCTGTGAGGCACTCAATGACGTTCGGCGTCTGTCCCTATTTCACAAAGAAGCAATGGTTGATATGTT......................................................................................................................................GAGAAATGTGATCTCCCTTGTTGTGAAATCTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0236E02-u8qcS/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E323625" ref_strand="+" ref_description="SGN-E323625 [cTOC-2-J22]">
      <seq>cgtgctgccggcccaattttggtgtgaaatagcgccgtctcattctactgttctcgccggttacaaatatctcttttctactctctctgtctattactcttcactcactatacacataaaatcctccattgtttagtaggttaaaatctgcttgtcgttgaagaggagagttcaaaatcatttcgatttgctgctttacccgatcatttcaccgcattttcctgatctaatccatatatgatgtctgaggaagctgctagagatctcattccactacctgaagctgggatgaacaatgagatccccagtaatgggagtgttccagcaataagggttgagagcattgataaaaattcaaaagataaggaaagagaaaatcctgccttactggttggaccttgccttaatggagacggtaaggtgaatactggggcagaggtgggaaattctgaagtggaatacatagaatctgagaatttgaatgatgtagaagatgttgacacaagtctcaagacactgttgactgggcttgac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0236E02-u8qcS/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0236E02.1" temp_strand="+" temp_description="C02HBa0236E02.1  AC215430.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0236E02 sequenced_by:kribb upload_account_name:korea">
        <position start="108251" stop="110958"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="108551" g_stop="108774" g_length="224"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="224" r_length="224" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="108775" i_stop="110227" i_length="1453">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.912" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="110228" g_stop="110516" g_length="289"/>
          <reference_exon_boundary r_type="cDNA" r_start="225" r_stop="513" r_length="289" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="110517" i_stop="110637" i_length="121">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.985" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="110638" g_stop="110658" g_length="21"/>
          <reference_exon_boundary r_type="cDNA" r_start="514" r_stop="534" r_length="21" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0236E02.1" gen_strand="+" ref_id="SGN-E323625" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>534</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0236E02.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E323625" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="108551" e_stop="108774"/>
          <exon e_start="110228" e_stop="110516"/>
          <exon e_start="110638" e_stop="110658"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CGTGCTGCCGGCCCAATTTTGGTGTGAAATAGCGCCGTCTCATTCTACTGTTCTCGCCGGTTACAAATATCTCTTTTCTACTCTCTCTGTCTATTACTCTTCACTCACTATACACATAAAATCCTCCATTGTTTAGTAGGTTAAAATCTGCTTGTCGTTGAAGAGGAGAGTTCAAAATCATTTCGATTTGCTGCTTTACCCGATCATTTCACCGCATTTTCCTGGTATGCTCAATCTTCGCTTACTCTGTTTATTTATTAGTTTATAGGTATGTTAAAGAGGTAGTATTGTACATTCGAATTACTAAAGCCCCTAAACATTGCATTTTTTGTAAATCGCTGATGGAGTAATCAAGTTGTATAGGTTTGTTGATTGTATTTGCTTTGAAGTTGCTAACTACGATCTGCGAAGGTTATTCTCTCTGAGATCTTGGCTATTCTACTTTAATACGTTTTGGATTGTTTTACTTTGTAGATAGTGCTTGTTGGAGTTGATTGTTCTGATCCTGTAATGTAGATGCGATTTTTTTGCCGTTACTATTATTAATACGAGGAATTTTTCCGTTAGTGATTATTTGTAAATAGTTTAATGGAGTTTGATGTGTCTAATCATTGTTATAATAGTGATTCGAAGTGCTTTGTTGCTAACTTGGATGGACAAAAATAAGCTAACTATTTCATTTGGGCTTAACTTAGGGTTTCGTTCTTTTTCTTAAAAGGTTTCTGCAGCATGATTTGAGTAAAAACTTGCGTGATTTGTACATTGGCAACATCTATTCTACTTAATTTACTGGCTGAAGGATTTTCACACCCAATGCTACCAATTGAAAACAAAGTAGTGTTGTCAAACCTTCAATCTTGAAGTTCATCAAATAAGAAATTGGATTGTTCATTCAGAAATATTAGATCACTATGTTACTTGTTCCTTTTTTTTCTTCTCAAAGGCATTAGATTATTGTGTGCGCTTTCCAGTTCTCCAGCCAATGCTACATCATTTACTTGATAATGTGAGTCCCCTAGTGGTGTCATGCCAGCTTAGGTACCTTGACTAATCCACTAGGTAACATTCTACACTGAAGCAAATCAGCTCTTTCCAGGTGTTATAACTGGTAGTTTGAACCTGGAATCTTCAGGTTGATACTTCTATGCCTAAACTATTCAGCTATCTTCAGGTGTTATAACTGGTAGTTTGAACCTGGAAGCCTTAATAGCTGTATTCTCTAGGATACTGTTCCGCTAAGAAAATTACAATTATCAGTGAAGCCTTGTGAGATTGATATTATCTTCCATCGATCATAAACAAAAACTTCAGTAGAAGAACTAAGTATTGATATGGAAAATTAGGTAAGGGACCTTGAAAGAAAAAAAAGTAAGTTACTGGAATGACCACAAATATGAAAAGGCATTACTGAGGTCCAAAAGTTAGTTCTAAAATCCCCGGAGTTCAAATATCTGTTTATTATGTTGTTTTCTCTTCTCCAGAGTTCACATATCAGTTTATTATATTGTTTTCTCCTCTTCTCTGGAGTTCACATATCTGTTTATTATGTTGCATTCTCCTCTTCTCCGGAGTTCACATATCTGTTTAGCTTTCTTCTCTTCTATTCGACCGGAAATGATTTCTTAAGTGCATTGCTGACGTGGCTCATAAAAACCCTTTACACTGCTGGTATTTCAGATCTAATCCATATATGATGTCTGAGGAAGCTGCTAGAGATCTCATTCCACTACCTGAAGCTGGGATGAACAATGAGATCCCCAGTAATGGGAGTGTTCCAGCAATAAGGGTTGAGAGCATTGATAAAAATTCAAAAGATAAGGAAAGAGAAAATCCTGCCTTACTGGTTGGACCTTGCCTTAATGGAGACGGTAAGGTGAATACTGGGGCAGAGGTGGGAAATTCTGAAGTGGAATACATAGAATCTGAGAATTTGAATGATGTAGAAGATGTTGACACAAGTCTCAAGGTAATGATTCCTGATATAGTTTGATGTTTCATTTTAGTATTTTGCATCTCGGTTTTGCTTCTTTATATTGGTTTACAAAAGTCTCTTTTCAATGTCTTTGCCTCTCCTTTTTCATTTGTAGACACTGTTGACTGGGCTTGAC</genome_strand>
        <mrna_strand>CGTGCTGCCGGCCCAATTTTGGTGTGAAATAGCGCCGTCTCATTCTACTGTTCTCGCCGGTTACAAATATCTCTTTTCTACTCTCTCTGTCTATTACTCTTCACTCACTATACACATAAAATCCTCCATTGTTTAGTAGGTTAAAATCTGCTTGTCGTTGAAGAGGAGAGTTCAAAATCATTTCGATTTGCTGCTTTACCCGATCATTTCACCGCATTTTCCTG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATCTAATCCATATATGATGTCTGAGGAAGCTGCTAGAGATCTCATTCCACTACCTGAAGCTGGGATGAACAATGAGATCCCCAGTAATGGGAGTGTTCCAGCAATAAGGGTTGAGAGCATTGATAAAAATTCAAAAGATAAGGAAAGAGAAAATCCTGCCTTACTGGTTGGACCTTGCCTTAATGGAGACGGTAAGGTGAATACTGGGGCAGAGGTGGGAAATTCTGAAGTGGAATACATAGAATCTGAGAATTTGAATGATGTAGAAGATGTTGACACAAGTCTCAAG.........................................................................................................................ACACTGTTGACTGGGCTTGAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0236E02-u8qcS/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E319500" ref_strand="+" ref_description="SGN-E319500 [cTOB-15-K9]">
      <seq>aattttggtgtgaaatagcgccgtctcattctactgttctcgccggttacaaatatctcttttctactctctctgtctattactcttcactcactatacacataaaatcctccattgtttagtaggttaaaatctgcttgtcgttgaagaggagagttcaaaatcatttcgatttgctgctttacccgatcatttcaccgcattttcctgatctaatccatatatgatgtctgaggaagctgctagagatctcattccactacctgaagctgggatgaacaatgagatccccagtaatgggagtgttccagcaataagggttgagagcattgataaaaattcaaaagataaggaaagagaaaatcctgccttactggttggaccttgccttaatggagacggtaaggtgaatactggggcagaggtgggaaattctgaagtggaatacatagaatctgagaatttgaatgatgtagaagatgttgacacaagtctc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0236E02-u8qcS/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0236E02.1" temp_strand="+" temp_description="C02HBa0236E02.1  AC215430.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0236E02 sequenced_by:kribb upload_account_name:korea">
        <position start="108265" stop="110813"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="108565" g_stop="108774" g_length="210"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="210" r_length="210" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="108775" i_stop="110227" i_length="1453">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.912" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="110228" g_stop="110513" g_length="286"/>
          <reference_exon_boundary r_type="cDNA" r_start="211" r_stop="496" r_length="286" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0236E02.1" gen_strand="+" ref_id="SGN-E319500" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>496</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0236E02.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E319500" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="108565" e_stop="108774"/>
          <exon e_start="110228" e_stop="110513"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AATTTTGGTGTGAAATAGCGCCGTCTCATTCTACTGTTCTCGCCGGTTACAAATATCTCTTTTCTACTCTCTCTGTCTATTACTCTTCACTCACTATACACATAAAATCCTCCATTGTTTAGTAGGTTAAAATCTGCTTGTCGTTGAAGAGGAGAGTTCAAAATCATTTCGATTTGCTGCTTTACCCGATCATTTCACCGCATTTTCCTGGTATGCTCAATCTTCGCTTACTCTGTTTATTTATTAGTTTATAGGTATGTTAAAGAGGTAGTATTGTACATTCGAATTACTAAAGCCCCTAAACATTGCATTTTTTGTAAATCGCTGATGGAGTAATCAAGTTGTATAGGTTTGTTGATTGTATTTGCTTTGAAGTTGCTAACTACGATCTGCGAAGGTTATTCTCTCTGAGATCTTGGCTATTCTACTTTAATACGTTTTGGATTGTTTTACTTTGTAGATAGTGCTTGTTGGAGTTGATTGTTCTGATCCTGTAATGTAGATGCGATTTTTTTGCCGTTACTATTATTAATACGAGGAATTTTTCCGTTAGTGATTATTTGTAAATAGTTTAATGGAGTTTGATGTGTCTAATCATTGTTATAATAGTGATTCGAAGTGCTTTGTTGCTAACTTGGATGGACAAAAATAAGCTAACTATTTCATTTGGGCTTAACTTAGGGTTTCGTTCTTTTTCTTAAAAGGTTTCTGCAGCATGATTTGAGTAAAAACTTGCGTGATTTGTACATTGGCAACATCTATTCTACTTAATTTACTGGCTGAAGGATTTTCACACCCAATGCTACCAATTGAAAACAAAGTAGTGTTGTCAAACCTTCAATCTTGAAGTTCATCAAATAAGAAATTGGATTGTTCATTCAGAAATATTAGATCACTATGTTACTTGTTCCTTTTTTTTCTTCTCAAAGGCATTAGATTATTGTGTGCGCTTTCCAGTTCTCCAGCCAATGCTACATCATTTACTTGATAATGTGAGTCCCCTAGTGGTGTCATGCCAGCTTAGGTACCTTGACTAATCCACTAGGTAACATTCTACACTGAAGCAAATCAGCTCTTTCCAGGTGTTATAACTGGTAGTTTGAACCTGGAATCTTCAGGTTGATACTTCTATGCCTAAACTATTCAGCTATCTTCAGGTGTTATAACTGGTAGTTTGAACCTGGAAGCCTTAATAGCTGTATTCTCTAGGATACTGTTCCGCTAAGAAAATTACAATTATCAGTGAAGCCTTGTGAGATTGATATTATCTTCCATCGATCATAAACAAAAACTTCAGTAGAAGAACTAAGTATTGATATGGAAAATTAGGTAAGGGACCTTGAAAGAAAAAAAAGTAAGTTACTGGAATGACCACAAATATGAAAAGGCATTACTGAGGTCCAAAAGTTAGTTCTAAAATCCCCGGAGTTCAAATATCTGTTTATTATGTTGTTTTCTCTTCTCCAGAGTTCACATATCAGTTTATTATATTGTTTTCTCCTCTTCTCTGGAGTTCACATATCTGTTTATTATGTTGCATTCTCCTCTTCTCCGGAGTTCACATATCTGTTTAGCTTTCTTCTCTTCTATTCGACCGGAAATGATTTCTTAAGTGCATTGCTGACGTGGCTCATAAAAACCCTTTACACTGCTGGTATTTCAGATCTAATCCATATATGATGTCTGAGGAAGCTGCTAGAGATCTCATTCCACTACCTGAAGCTGGGATGAACAATGAGATCCCCAGTAATGGGAGTGTTCCAGCAATAAGGGTTGAGAGCATTGATAAAAATTCAAAAGATAAGGAAAGAGAAAATCCTGCCTTACTGGTTGGACCTTGCCTTAATGGAGACGGTAAGGTGAATACTGGGGCAGAGGTGGGAAATTCTGAAGTGGAATACATAGAATCTGAGAATTTGAATGATGTAGAAGATGTTGACACAAGTCTC</genome_strand>
        <mrna_strand>AATTTTGGTGTGAAATAGCGCCGTCTCATTCTACTGTTCTCGCCGGTTACAAATATCTCTTTTCTACTCTCTCTGTCTATTACTCTTCACTCACTATACACATAAAATCCTCCATTGTTTAGTAGGTTAAAATCTGCTTGTCGTTGAAGAGGAGAGTTCAAAATCATTTCGATTTGCTGCTTTACCCGATCATTTCACCGCATTTTCCTG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATCTAATCCATATATGATGTCTGAGGAAGCTGCTAGAGATCTCATTCCACTACCTGAAGCTGGGATGAACAATGAGATCCCCAGTAATGGGAGTGTTCCAGCAATAAGGGTTGAGAGCATTGATAAAAATTCAAAAGATAAGGAAAGAGAAAATCCTGCCTTACTGGTTGGACCTTGCCTTAATGGAGACGGTAAGGTGAATACTGGGGCAGAGGTGGGAAATTCTGAAGTGGAATACATAGAATCTGAGAATTTGAATGATGTAGAAGATGTTGACACAAGTCTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0236E02-u8qcS/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E481345" ref_strand="+" ref_description="SGN-E481345 [cSTD-17-J16]">
      <seq>cacaccaaatcctccattgtttagtaggttaaaatctgcttgtctctgaagaggagagttcaaaatcaattcgatttgctgctttacccgatcatttcaccgcatttttctgaatctactccatatatgatgtctgaggaagctgctagagatctcattgcactacctgaagctgggatgaacaatgagatccccagtaatgggggtgttctggtgataggggttgagagcgttgatataaattcaaaagataaggaaagagaaaagcctgccttactggttggaccttgccttaatggagacagtaaggtgaatactggggcagaggtgggaaattcagaggtggaatacatagaatctgagaatttgaatgatgtagaagatgttgacacaagtcttaagacactgctgactgggctagaatccaaggactgggttttagtgtgtgaggcactcaatgacgttcggcgtctgtccctatttcacaaagaagcaatggttgatatgttgggaaatgtgatctcccttgttgtgaaatctttgaaaaatccgagaagtgctgtttgtaagactgctattatggcatcagctgacattttcaaagtatactgtgacagcatagttgacttgatggatc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0236E02-u8qcS/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0236E02.1" temp_strand="+" temp_description="C02HBa0236E02.1  AC215430.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0236E02 sequenced_by:kribb upload_account_name:korea">
        <position start="108363" stop="111306"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="108663" g_stop="108774" g_length="112"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="113" r_length="113" r_score="0.929"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="108775" i_stop="110227" i_length="1453">
            <donor d_prob="0.999" d_score="0.92"/>
            <acceptor a_prob="0.912" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="110228" g_stop="110516" g_length="289"/>
          <reference_exon_boundary r_type="cDNA" r_start="114" r_stop="402" r_length="289" r_score="0.948"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="110517" i_stop="110637" i_length="121">
            <donor d_prob="0.999" d_score="0.98"/>
            <acceptor a_prob="0.985" a_score="0.92"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="110638" g_stop="110744" g_length="107"/>
          <reference_exon_boundary r_type="cDNA" r_start="403" r_stop="509" r_length="107" r_score="0.963"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="110745" i_stop="110878" i_length="134">
            <donor d_prob="0.878" d_score="1.00"/>
            <acceptor a_prob="0.849" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="110879" g_stop="111006" g_length="128"/>
          <reference_exon_boundary r_type="cDNA" r_start="510" r_stop="637" r_length="128" r_score="0.977"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0236E02.1" gen_strand="+" ref_id="SGN-E481345" ref_strand="+">
        <total_alignment_score>0.953</total_alignment_score>
        <cumulative_length_of_scored_exons>636</cumulative_length_of_scored_exons>
        <coverage percentage="0.998" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0236E02.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E481345" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="108663" e_stop="108774"/>
          <exon e_start="110228" e_stop="110516"/>
          <exon e_start="110638" e_stop="110744"/>
          <exon e_start="110879" e_stop="111006"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CACATAAAATCCTCCATTGTTTAGTAGGTTAAAATCTGCTTGTCGTTGAAGAGGAGAGTTCAAAATCATTTCGATTTGCTGCTTTACCCGATCATTTCACCGCATTTTCCTG-GTATGCTCAATCTTCGCTTACTCTGTTTATTTATTAGTTTATAGGTATGTTAAAGAGGTAGTATTGTACATTCGAATTACTAAAGCCCCTAAACATTGCATTTTTTGTAAATCGCTGATGGAGTAATCAAGTTGTATAGGTTTGTTGATTGTATTTGCTTTGAAGTTGCTAACTACGATCTGCGAAGGTTATTCTCTCTGAGATCTTGGCTATTCTACTTTAATACGTTTTGGATTGTTTTACTTTGTAGATAGTGCTTGTTGGAGTTGATTGTTCTGATCCTGTAATGTAGATGCGATTTTTTTGCCGTTACTATTATTAATACGAGGAATTTTTCCGTTAGTGATTATTTGTAAATAGTTTAATGGAGTTTGATGTGTCTAATCATTGTTATAATAGTGATTCGAAGTGCTTTGTTGCTAACTTGGATGGACAAAAATAAGCTAACTATTTCATTTGGGCTTAACTTAGGGTTTCGTTCTTTTTCTTAAAAGGTTTCTGCAGCATGATTTGAGTAAAAACTTGCGTGATTTGTACATTGGCAACATCTATTCTACTTAATTTACTGGCTGAAGGATTTTCACACCCAATGCTACCAATTGAAAACAAAGTAGTGTTGTCAAACCTTCAATCTTGAAGTTCATCAAATAAGAAATTGGATTGTTCATTCAGAAATATTAGATCACTATGTTACTTGTTCCTTTTTTTTCTTCTCAAAGGCATTAGATTATTGTGTGCGCTTTCCAGTTCTCCAGCCAATGCTACATCATTTACTTGATAATGTGAGTCCCCTAGTGGTGTCATGCCAGCTTAGGTACCTTGACTAATCCACTAGGTAACATTCTACACTGAAGCAAATCAGCTCTTTCCAGGTGTTATAACTGGTAGTTTGAACCTGGAATCTTCAGGTTGATACTTCTATGCCTAAACTATTCAGCTATCTTCAGGTGTTATAACTGGTAGTTTGAACCTGGAAGCCTTAATAGCTGTATTCTCTAGGATACTGTTCCGCTAAGAAAATTACAATTATCAGTGAAGCCTTGTGAGATTGATATTATCTTCCATCGATCATAAACAAAAACTTCAGTAGAAGAACTAAGTATTGATATGGAAAATTAGGTAAGGGACCTTGAAAGAAAAAAAAGTAAGTTACTGGAATGACCACAAATATGAAAAGGCATTACTGAGGTCCAAAAGTTAGTTCTAAAATCCCCGGAGTTCAAATATCTGTTTATTATGTTGTTTTCTCTTCTCCAGAGTTCACATATCAGTTTATTATATTGTTTTCTCCTCTTCTCTGGAGTTCACATATCTGTTTATTATGTTGCATTCTCCTCTTCTCCGGAGTTCACATATCTGTTTAGCTTTCTTCTCTTCTATTCGACCGGAAATGATTTCTTAAGTGCATTGCTGACGTGGCTCATAAAAACCCTTTACACTGCTGGTATTTCAGATCTAATCCATATATGATGTCTGAGGAAGCTGCTAGAGATCTCATTCCACTACCTGAAGCTGGGATGAACAATGAGATCCCCAGTAATGGGAGTGTTCCAGCAATAAGGGTTGAGAGCATTGATAAAAATTCAAAAGATAAGGAAAGAGAAAATCCTGCCTTACTGGTTGGACCTTGCCTTAATGGAGACGGTAAGGTGAATACTGGGGCAGAGGTGGGAAATTCTGAAGTGGAATACATAGAATCTGAGAATTTGAATGATGTAGAAGATGTTGACACAAGTCTCAAGGTAATGATTCCTGATATAGTTTGATGTTTCATTTTAGTATTTTGCATCTCGGTTTTGCTTCTTTATATTGGTTTACAAAAGTCTCTTTTCAATGTCTTTGCCTCTCCTTTTTCATTTGTAGACACTGTTGACTGGGCTTGACTCCAAGGACTGGGTTTTAGTCTGTGAGGCACTCAATGACGTTCGGCGTCTGTCCCTATTTCACAAAGAAGCAATGGTTGATATGTTGTAAGTCTTTGTCACCTAGGATATAACTTGAAAGATGTTTGATCATGATGTTCTAGCTGGTTAGACATATCTTTGTGTATGCTCCCCTTTTGTTCTGTCTGGTCTTACTTATGCTTATTACTTAAAATGAGCAGGAGAAATGTGATCTCCCTTGTTGTGAAATCTTTGAAAAATCCGAGAAGTGCTGTTTGTAAGACTGCTATTATGGCATCAGCTGACATTTTCAAAGCATACTGTGACACCATAGTTGACTTGATGGATC</genome_strand>
        <mrna_strand>CACACCAAATCCTCCATTGTTTAGTAGGTTAAAATCTGCTTGTCTCTGAAGAGGAGAGTTCAAAATCAATTCGATTTGCTGCTTTACCCGATCATTTCACCGCATTTTTCTGA.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATCTACTCCATATATGATGTCTGAGGAAGCTGCTAGAGATCTCATTGCACTACCTGAAGCTGGGATGAACAATGAGATCCCCAGTAATGGGGGTGTTCTGGTGATAGGGGTTGAGAGCGTTGATATAAATTCAAAAGATAAGGAAAGAGAAAAGCCTGCCTTACTGGTTGGACCTTGCCTTAATGGAGACAGTAAGGTGAATACTGGGGCAGAGGTGGGAAATTCAGAGGTGGAATACATAGAATCTGAGAATTTGAATGATGTAGAAGATGTTGACACAAGTCTTAAG.........................................................................................................................ACACTGCTGACTGGGCTAGAATCCAAGGACTGGGTTTTAGTGTGTGAGGCACTCAATGACGTTCGGCGTCTGTCCCTATTTCACAAAGAAGCAATGGTTGATATGTT......................................................................................................................................GGGAAATGTGATCTCCCTTGTTGTGAAATCTTTGAAAAATCCGAGAAGTGCTGTTTGTAAGACTGCTATTATGGCATCAGCTGACATTTTCAAAGTATACTGTGACAGCATAGTTGACTTGATGGATC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0236E02-u8qcS/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E348677" ref_strand="+" ref_description="SGN-E348677 [cTOF-30-L23]">
      <seq>gataaaatcctccattgtttagtaggttaaaatctgcttgtcgttgaagaggagagttcaaaatcatttcgatttgctgctttacccgatcatttcaccgcattttcctgatctaatccatatatgatgtctgaggaagctgctagagatctcattccactacctgaagctgggatgaacaatgagatccccagtaatgggagtgttccagcaataagggttgagagcattgataaaaattcaaaagataaggaaagagaaaatcctgccttactggttggaccttgccttaatggagacggtaaggtgaatactggggcagaggtgggaaattctgaagtggaatacatagaatctgagaatttgaatgatgtagaagatgttgacacaagtctcaagacactgttgactgggcttgactccaaggactgggttttagtctgtgaggcactcaatgacgttcggcgtctgtccctatttcacaaagaagcaatggttgatatgttgagaaatgtgatctcccttgttgtgaaatctttgaaaaaccgagaagtgctgtttgtaagactgctattatggcatcagctgacattttcaaagcatactgtgacaccatagttgacttgatggatccactgcttgtacaacttcttctgaagtcttacaagacaagcgatttgtttgcgaggcagctgaaaagctctaaagcatg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0236E02-u8qcS/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0236E02.1" temp_strand="+" temp_description="C02HBa0236E02.1  AC215430.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0236E02 sequenced_by:kribb upload_account_name:korea">
        <position start="108366" stop="111491"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="108665" g_stop="108774" g_length="110"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="110" r_length="110" r_score="0.991"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="108775" i_stop="110227" i_length="1453">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.912" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="110228" g_stop="110516" g_length="289"/>
          <reference_exon_boundary r_type="cDNA" r_start="111" r_stop="399" r_length="289" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="110517" i_stop="110637" i_length="121">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.985" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="110638" g_stop="110744" g_length="107"/>
          <reference_exon_boundary r_type="cDNA" r_start="400" r_stop="506" r_length="107" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="110745" i_stop="110878" i_length="134">
            <donor d_prob="0.878" d_score="1.00"/>
            <acceptor a_prob="0.849" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="110879" g_stop="111011" g_length="133"/>
          <reference_exon_boundary r_type="cDNA" r_start="507" r_stop="638" r_length="132" r_score="0.992"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="111012" i_stop="111113" i_length="102">
            <donor d_prob="0.949" d_score="1.00"/>
            <acceptor a_prob="0.785" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="111114" g_stop="111187" g_length="74"/>
          <reference_exon_boundary r_type="cDNA" r_start="639" r_stop="709" r_length="71" r_score="0.959"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0236E02.1" gen_strand="+" ref_id="SGN-E348677" ref_strand="+">
        <total_alignment_score>0.993</total_alignment_score>
        <cumulative_length_of_scored_exons>713</cumulative_length_of_scored_exons>
        <coverage percentage="1.001" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0236E02.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E348677" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="108665" e_stop="108774"/>
          <exon e_start="110228" e_stop="110516"/>
          <exon e_start="110638" e_stop="110744"/>
          <exon e_start="110879" e_stop="111011"/>
          <exon e_start="111114" e_stop="111187"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CATAAAATCCTCCATTGTTTAGTAGGTTAAAATCTGCTTGTCGTTGAAGAGGAGAGTTCAAAATCATTTCGATTTGCTGCTTTACCCGATCATTTCACCGCATTTTCCTGGTATGCTCAATCTTCGCTTACTCTGTTTATTTATTAGTTTATAGGTATGTTAAAGAGGTAGTATTGTACATTCGAATTACTAAAGCCCCTAAACATTGCATTTTTTGTAAATCGCTGATGGAGTAATCAAGTTGTATAGGTTTGTTGATTGTATTTGCTTTGAAGTTGCTAACTACGATCTGCGAAGGTTATTCTCTCTGAGATCTTGGCTATTCTACTTTAATACGTTTTGGATTGTTTTACTTTGTAGATAGTGCTTGTTGGAGTTGATTGTTCTGATCCTGTAATGTAGATGCGATTTTTTTGCCGTTACTATTATTAATACGAGGAATTTTTCCGTTAGTGATTATTTGTAAATAGTTTAATGGAGTTTGATGTGTCTAATCATTGTTATAATAGTGATTCGAAGTGCTTTGTTGCTAACTTGGATGGACAAAAATAAGCTAACTATTTCATTTGGGCTTAACTTAGGGTTTCGTTCTTTTTCTTAAAAGGTTTCTGCAGCATGATTTGAGTAAAAACTTGCGTGATTTGTACATTGGCAACATCTATTCTACTTAATTTACTGGCTGAAGGATTTTCACACCCAATGCTACCAATTGAAAACAAAGTAGTGTTGTCAAACCTTCAATCTTGAAGTTCATCAAATAAGAAATTGGATTGTTCATTCAGAAATATTAGATCACTATGTTACTTGTTCCTTTTTTTTCTTCTCAAAGGCATTAGATTATTGTGTGCGCTTTCCAGTTCTCCAGCCAATGCTACATCATTTACTTGATAATGTGAGTCCCCTAGTGGTGTCATGCCAGCTTAGGTACCTTGACTAATCCACTAGGTAACATTCTACACTGAAGCAAATCAGCTCTTTCCAGGTGTTATAACTGGTAGTTTGAACCTGGAATCTTCAGGTTGATACTTCTATGCCTAAACTATTCAGCTATCTTCAGGTGTTATAACTGGTAGTTTGAACCTGGAAGCCTTAATAGCTGTATTCTCTAGGATACTGTTCCGCTAAGAAAATTACAATTATCAGTGAAGCCTTGTGAGATTGATATTATCTTCCATCGATCATAAACAAAAACTTCAGTAGAAGAACTAAGTATTGATATGGAAAATTAGGTAAGGGACCTTGAAAGAAAAAAAAGTAAGTTACTGGAATGACCACAAATATGAAAAGGCATTACTGAGGTCCAAAAGTTAGTTCTAAAATCCCCGGAGTTCAAATATCTGTTTATTATGTTGTTTTCTCTTCTCCAGAGTTCACATATCAGTTTATTATATTGTTTTCTCCTCTTCTCTGGAGTTCACATATCTGTTTATTATGTTGCATTCTCCTCTTCTCCGGAGTTCACATATCTGTTTAGCTTTCTTCTCTTCTATTCGACCGGAAATGATTTCTTAAGTGCATTGCTGACGTGGCTCATAAAAACCCTTTACACTGCTGGTATTTCAGATCTAATCCATATATGATGTCTGAGGAAGCTGCTAGAGATCTCATTCCACTACCTGAAGCTGGGATGAACAATGAGATCCCCAGTAATGGGAGTGTTCCAGCAATAAGGGTTGAGAGCATTGATAAAAATTCAAAAGATAAGGAAAGAGAAAATCCTGCCTTACTGGTTGGACCTTGCCTTAATGGAGACGGTAAGGTGAATACTGGGGCAGAGGTGGGAAATTCTGAAGTGGAATACATAGAATCTGAGAATTTGAATGATGTAGAAGATGTTGACACAAGTCTCAAGGTAATGATTCCTGATATAGTTTGATGTTTCATTTTAGTATTTTGCATCTCGGTTTTGCTTCTTTATATTGGTTTACAAAAGTCTCTTTTCAATGTCTTTGCCTCTCCTTTTTCATTTGTAGACACTGTTGACTGGGCTTGACTCCAAGGACTGGGTTTTAGTCTGTGAGGCACTCAATGACGTTCGGCGTCTGTCCCTATTTCACAAAGAAGCAATGGTTGATATGTTGTAAGTCTTTGTCACCTAGGATATAACTTGAAAGATGTTTGATCATGATGTTCTAGCTGGTTAGACATATCTTTGTGTATGCTCCCCTTTTGTTCTGTCTGGTCTTACTTATGCTTATTACTTAAAATGAGCAGGAGAAATGTGATCTCCCTTGTTGTGAAATCTTTGAAAAATCCGAGAAGTGCTGTTTGTAAGACTGCTATTATGGCATCAGCTGACATTTTCAAAGCATACTGTGACACCATAGTTGACTTGATGGATCCACTGGTAACTTTTCTCTTTTGTGACTTGTGTGACTGCCTTGGCAATATATTTTCACCTAATTTTACCTTGTTCTTGTGCTTATTATGTGACTGTTTCCTTGCTTAGCTTGTACAACTTCTTCTGAAGTCTTCACAAGACAAGCGATTTGTTTGCGAGGCAGCTGAAAAAGCTCTAAAAGC</genome_strand>
        <mrna_strand>GATAAAATCCTCCATTGTTTAGTAGGTTAAAATCTGCTTGTCGTTGAAGAGGAGAGTTCAAAATCATTTCGATTTGCTGCTTTACCCGATCATTTCACCGCATTTTCCTG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATCTAATCCATATATGATGTCTGAGGAAGCTGCTAGAGATCTCATTCCACTACCTGAAGCTGGGATGAACAATGAGATCCCCAGTAATGGGAGTGTTCCAGCAATAAGGGTTGAGAGCATTGATAAAAATTCAAAAGATAAGGAAAGAGAAAATCCTGCCTTACTGGTTGGACCTTGCCTTAATGGAGACGGTAAGGTGAATACTGGGGCAGAGGTGGGAAATTCTGAAGTGGAATACATAGAATCTGAGAATTTGAATGATGTAGAAGATGTTGACACAAGTCTCAAG.........................................................................................................................ACACTGTTGACTGGGCTTGACTCCAAGGACTGGGTTTTAGTCTGTGAGGCACTCAATGACGTTCGGCGTCTGTCCCTATTTCACAAAGAAGCAATGGTTGATATGTT......................................................................................................................................GAGAAATGTGATCTCCCTTGTTGTGAAATCTTTGAAAAA-CCGAGAAGTGCTGTTTGTAAGACTGCTATTATGGCATCAGCTGACATTTTCAAAGCATACTGTGACACCATAGTTGACTTGATGGATCCACTG......................................................................................................CTTGTACAACTTCTTCTGAAGTCTT-ACAAGACAAGCGATTTGTTTGCGAGGCAGCTG-AAAAGCTCT-AAAGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0236E02-u8qcS/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E689210" ref_strand="+" ref_description="SGN-E689210 [t3_tus_80_J09]">
      <seq>gtcgttgaagaggagagttcaaaatcatttcgatttgctgctttacccgatcatttcaccgcattttcctgatctaatccatatatgatgtctgaggaagctgctagagatctcattccactacctgaagctgggatgaacaatgagatccccagtaatgggagtgttccagcaataagggttgagagcattgataaaaattcaaaagataaggaaagagaaaatcctgccttactggttggaccttgccttaatggagacggtaaggtgaatactggggcagaggtgggaaattctgaagtggaatacatagaatctgagaatttgaatgatgtagaagatgttgacacaagtctcaagacactgttgactgggcttgactccnaggactgggttttagtctgtgaggcactcaatgacgttcggcgtctgtccctatttcacaaagaagcaatggttgatatgttgagaaatgtgatctcccttgttgtgaaatctttgaaaaatccgagaagtgctgtttgtaagactgctattatggcatcagctgacattttcaaagcatactgtgacaccatagttgacttgatggatccactgcttgtacaacttcttctgaagtcttcacaagacaagcgatttgtttgcgaggcagctgaaaaagctctaaaagcaatgacaatgtgggtttctccatcgctgttgttaccgaagttgcaaccaaatttgaaacacagaaatcctagaattcgagcaaaagcttcaagctgcttttctcgaagtgtaccacgtctgggagtagagggaattaaagcatatggaattgagaacttgatccgaatagctgcatcgcagctcaatgac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0236E02-u8qcS/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0236E02.1" temp_strand="+" temp_description="C02HBa0236E02.1  AC215430.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0236E02 sequenced_by:kribb upload_account_name:korea">
        <position start="108404" stop="112446"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="108704" g_stop="108774" g_length="71"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="71" r_length="71" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="108775" i_stop="110227" i_length="1453">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.912" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="110228" g_stop="110516" g_length="289"/>
          <reference_exon_boundary r_type="cDNA" r_start="72" r_stop="360" r_length="289" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="110517" i_stop="110637" i_length="121">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.985" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="110638" g_stop="110744" g_length="107"/>
          <reference_exon_boundary r_type="cDNA" r_start="361" r_stop="467" r_length="107" r_score="0.991"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="110745" i_stop="110878" i_length="134">
            <donor d_prob="0.878" d_score="1.00"/>
            <acceptor a_prob="0.849" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="110879" g_stop="111011" g_length="133"/>
          <reference_exon_boundary r_type="cDNA" r_start="468" r_stop="600" r_length="133" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="111012" i_stop="111113" i_length="102">
            <donor d_prob="0.949" d_score="1.00"/>
            <acceptor a_prob="0.785" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="111114" g_stop="111308" g_length="195"/>
          <reference_exon_boundary r_type="cDNA" r_start="601" r_stop="795" r_length="195" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="111309" i_stop="112077" i_length="769">
            <donor d_prob="0.975" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="112078" g_stop="112146" g_length="69"/>
          <reference_exon_boundary r_type="cDNA" r_start="796" r_stop="864" r_length="69" r_score="0.986"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0236E02.1" gen_strand="+" ref_id="SGN-E689210" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>864</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0236E02.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E689210" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="108704" e_stop="108774"/>
          <exon e_start="110228" e_stop="110516"/>
          <exon e_start="110638" e_stop="110744"/>
          <exon e_start="110879" e_stop="111011"/>
          <exon e_start="111114" e_stop="111308"/>
          <exon e_start="112078" e_stop="112146"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTCGTTGAAGAGGAGAGTTCAAAATCATTTCGATTTGCTGCTTTACCCGATCATTTCACCGCATTTTCCTGGTATGCTCAATCTTCGCTTACTCTGTTTATTTATTAGTTTATAGGTATGTTAAAGAGGTAGTATTGTACATTCGAATTACTAAAGCCCCTAAACATTGCATTTTTTGTAAATCGCTGATGGAGTAATCAAGTTGTATAGGTTTGTTGATTGTATTTGCTTTGAAGTTGCTAACTACGATCTGCGAAGGTTATTCTCTCTGAGATCTTGGCTATTCTACTTTAATACGTTTTGGATTGTTTTACTTTGTAGATAGTGCTTGTTGGAGTTGATTGTTCTGATCCTGTAATGTAGATGCGATTTTTTTGCCGTTACTATTATTAATACGAGGAATTTTTCCGTTAGTGATTATTTGTAAATAGTTTAATGGAGTTTGATGTGTCTAATCATTGTTATAATAGTGATTCGAAGTGCTTTGTTGCTAACTTGGATGGACAAAAATAAGCTAACTATTTCATTTGGGCTTAACTTAGGGTTTCGTTCTTTTTCTTAAAAGGTTTCTGCAGCATGATTTGAGTAAAAACTTGCGTGATTTGTACATTGGCAACATCTATTCTACTTAATTTACTGGCTGAAGGATTTTCACACCCAATGCTACCAATTGAAAACAAAGTAGTGTTGTCAAACCTTCAATCTTGAAGTTCATCAAATAAGAAATTGGATTGTTCATTCAGAAATATTAGATCACTATGTTACTTGTTCCTTTTTTTTCTTCTCAAAGGCATTAGATTATTGTGTGCGCTTTCCAGTTCTCCAGCCAATGCTACATCATTTACTTGATAATGTGAGTCCCCTAGTGGTGTCATGCCAGCTTAGGTACCTTGACTAATCCACTAGGTAACATTCTACACTGAAGCAAATCAGCTCTTTCCAGGTGTTATAACTGGTAGTTTGAACCTGGAATCTTCAGGTTGATACTTCTATGCCTAAACTATTCAGCTATCTTCAGGTGTTATAACTGGTAGTTTGAACCTGGAAGCCTTAATAGCTGTATTCTCTAGGATACTGTTCCGCTAAGAAAATTACAATTATCAGTGAAGCCTTGTGAGATTGATATTATCTTCCATCGATCATAAACAAAAACTTCAGTAGAAGAACTAAGTATTGATATGGAAAATTAGGTAAGGGACCTTGAAAGAAAAAAAAGTAAGTTACTGGAATGACCACAAATATGAAAAGGCATTACTGAGGTCCAAAAGTTAGTTCTAAAATCCCCGGAGTTCAAATATCTGTTTATTATGTTGTTTTCTCTTCTCCAGAGTTCACATATCAGTTTATTATATTGTTTTCTCCTCTTCTCTGGAGTTCACATATCTGTTTATTATGTTGCATTCTCCTCTTCTCCGGAGTTCACATATCTGTTTAGCTTTCTTCTCTTCTATTCGACCGGAAATGATTTCTTAAGTGCATTGCTGACGTGGCTCATAAAAACCCTTTACACTGCTGGTATTTCAGATCTAATCCATATATGATGTCTGAGGAAGCTGCTAGAGATCTCATTCCACTACCTGAAGCTGGGATGAACAATGAGATCCCCAGTAATGGGAGTGTTCCAGCAATAAGGGTTGAGAGCATTGATAAAAATTCAAAAGATAAGGAAAGAGAAAATCCTGCCTTACTGGTTGGACCTTGCCTTAATGGAGACGGTAAGGTGAATACTGGGGCAGAGGTGGGAAATTCTGAAGTGGAATACATAGAATCTGAGAATTTGAATGATGTAGAAGATGTTGACACAAGTCTCAAGGTAATGATTCCTGATATAGTTTGATGTTTCATTTTAGTATTTTGCATCTCGGTTTTGCTTCTTTATATTGGTTTACAAAAGTCTCTTTTCAATGTCTTTGCCTCTCCTTTTTCATTTGTAGACACTGTTGACTGGGCTTGACTCCAAGGACTGGGTTTTAGTCTGTGAGGCACTCAATGACGTTCGGCGTCTGTCCCTATTTCACAAAGAAGCAATGGTTGATATGTTGTAAGTCTTTGTCACCTAGGATATAACTTGAAAGATGTTTGATCATGATGTTCTAGCTGGTTAGACATATCTTTGTGTATGCTCCCCTTTTGTTCTGTCTGGTCTTACTTATGCTTATTACTTAAAATGAGCAGGAGAAATGTGATCTCCCTTGTTGTGAAATCTTTGAAAAATCCGAGAAGTGCTGTTTGTAAGACTGCTATTATGGCATCAGCTGACATTTTCAAAGCATACTGTGACACCATAGTTGACTTGATGGATCCACTGGTAACTTTTCTCTTTTGTGACTTGTGTGACTGCCTTGGCAATATATTTTCACCTAATTTTACCTTGTTCTTGTGCTTATTATGTGACTGTTTCCTTGCTTAGCTTGTACAACTTCTTCTGAAGTCTTCACAAGACAAGCGATTTGTTTGCGAGGCAGCTGAAAAAGCTCTAAAAGCAATGACAATGTGGGTTTCTCCATCGCTGTTGTTACCGAAGTTGCAACCAAATTTGAAACACAGAAATCCTAGAATTCGAGCAAAAGCTTCAAGCTGCTTTTCTCGAAGTGTACCACGTCTGGTGAGAGTTCAAAGTTCTAAAATCTCTTCCTTATGCACCCTGACTTGTGAATTTTAGTAATTACTATTTTCATTCTTACATTTTTTTCCTGCAATTGTTGTTAACGTAGTTTGTTTGTTATTTGCTGACTAATATCTTTTCCCTTGACTGTTTTATAGACAATATCTTGATACAAACTCCACCCTAGGAAACCCTTCTTGAGAGCGTTTTAAGAATTACTTCTTGAGAATGTTTACTAATTACTTTACTGGTTAAAGGAATGGATAGGTAATAATTTGTTTATCTGCTGACTCTGACTAAGATCTTTCCCTTGGCTATGTTTTATTGACAATGCCTTGATGCTGAACTCTACCCTAGTAGGACACCCTTCTTGAGAGCGTTTGAAGAATGAATTTTTCTGATTAAGGAAATGACTAGGTAACAATTTGTCAGTCATTTGAGTATATTAGGAACTTTTACATGGTTTCTCCAATAAGTTTTGTTCACAATGCTATAATTAACCGCTTTCAATACCCTTCTGGTGGTTATTTTATTATTCAGCAGTATAAATTTGTTCTTGTTGAATGAAACAAGAAAGATTACATATTAACGGCCCCTTAACATGGAAACATTTTCTGGCATTTGTGTCTTTTCATGTATGATCATATCACTGAAATGTGAAAGAGGAATAAACTTTGTCCTGTTCTTAGTTTTTGTTTTCTAGCTGGTTGCCCAATTCTCTTTTTACTACTAGATCTGGTCCTTACTAACAGAGTTGCATGTTTTACAGGGAGTAGAGGGAATTAAAGCATATGGAATTGAGAACTTGATCCGAATAGCTGCATCGCAGCTCAGTGAC</genome_strand>
        <mrna_strand>GTCGTTGAAGAGGAGAGTTCAAAATCATTTCGATTTGCTGCTTTACCCGATCATTTCACCGCATTTTCCTG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATCTAATCCATATATGATGTCTGAGGAAGCTGCTAGAGATCTCATTCCACTACCTGAAGCTGGGATGAACAATGAGATCCCCAGTAATGGGAGTGTTCCAGCAATAAGGGTTGAGAGCATTGATAAAAATTCAAAAGATAAGGAAAGAGAAAATCCTGCCTTACTGGTTGGACCTTGCCTTAATGGAGACGGTAAGGTGAATACTGGGGCAGAGGTGGGAAATTCTGAAGTGGAATACATAGAATCTGAGAATTTGAATGATGTAGAAGATGTTGACACAAGTCTCAAG.........................................................................................................................ACACTGTTGACTGGGCTTGACTCCNAGGACTGGGTTTTAGTCTGTGAGGCACTCAATGACGTTCGGCGTCTGTCCCTATTTCACAAAGAAGCAATGGTTGATATGTT......................................................................................................................................GAGAAATGTGATCTCCCTTGTTGTGAAATCTTTGAAAAATCCGAGAAGTGCTGTTTGTAAGACTGCTATTATGGCATCAGCTGACATTTTCAAAGCATACTGTGACACCATAGTTGACTTGATGGATCCACTG......................................................................................................CTTGTACAACTTCTTCTGAAGTCTTCACAAGACAAGCGATTTGTTTGCGAGGCAGCTGAAAAAGCTCTAAAAGCAATGACAATGTGGGTTTCTCCATCGCTGTTGTTACCGAAGTTGCAACCAAATTTGAAACACAGAAATCCTAGAATTCGAGCAAAAGCTTCAAGCTGCTTTTCTCGAAGTGTACCACGTCTG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGAGTAGAGGGAATTAAAGCATATGGAATTGAGAACTTGATCCGAATAGCTGCATCGCAGCTCAATGAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0236E02-u8qcS/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E324984" ref_strand="+" ref_description="SGN-E324984 [cTOC-11-H10]">
      <seq>tcgttgaagaggagagttcaaaatcatttcgatttgctgctttacccgatcatttcaccgcattttcctgatctaatccatatatgatgtctgaggaagctgctagagatctcattccactacctgaagctgggatgaacaatgagatccccagtaatgggagtgttccagcaataagggttgagagcattgataaaaattcaaaagataaggaaagagaaaatcctgccttactggttggaccttgccttaatggagacggtaaggtgaatactggggcagaggtgggaaattctgaagtggaatacatagaatctgagaatttgaatgatgtagaagatgttgacacaagtctcaagacactgttgactgggcttgactccaaggactgggttttagtctgtgaggcactcaatgacgttcggcgtctgtccctatttcacaaagaagcaatggttgatatgttgagaaatgtgatc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0236E02-u8qcS/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0236E02.1" temp_strand="+" temp_description="C02HBa0236E02.1  AC215430.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0236E02 sequenced_by:kribb upload_account_name:korea">
        <position start="108405" stop="111045"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="108705" g_stop="108774" g_length="70"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="70" r_length="70" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="108775" i_stop="110227" i_length="1453">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.912" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="110228" g_stop="110516" g_length="289"/>
          <reference_exon_boundary r_type="cDNA" r_start="71" r_stop="359" r_length="289" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="110517" i_stop="110637" i_length="121">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.985" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="110638" g_stop="110744" g_length="107"/>
          <reference_exon_boundary r_type="cDNA" r_start="360" r_stop="466" r_length="107" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="110745" i_stop="110878" i_length="134">
            <donor d_prob="0.878" d_score="1.00"/>
            <acceptor a_prob="0.849" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="110879" g_stop="110891" g_length="13"/>
          <reference_exon_boundary r_type="cDNA" r_start="467" r_stop="479" r_length="13" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0236E02.1" gen_strand="+" ref_id="SGN-E324984" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>479</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0236E02.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E324984" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="108705" e_stop="108774"/>
          <exon e_start="110228" e_stop="110516"/>
          <exon e_start="110638" e_stop="110744"/>
          <exon e_start="110879" e_stop="110891"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCGTTGAAGAGGAGAGTTCAAAATCATTTCGATTTGCTGCTTTACCCGATCATTTCACCGCATTTTCCTGGTATGCTCAATCTTCGCTTACTCTGTTTATTTATTAGTTTATAGGTATGTTAAAGAGGTAGTATTGTACATTCGAATTACTAAAGCCCCTAAACATTGCATTTTTTGTAAATCGCTGATGGAGTAATCAAGTTGTATAGGTTTGTTGATTGTATTTGCTTTGAAGTTGCTAACTACGATCTGCGAAGGTTATTCTCTCTGAGATCTTGGCTATTCTACTTTAATACGTTTTGGATTGTTTTACTTTGTAGATAGTGCTTGTTGGAGTTGATTGTTCTGATCCTGTAATGTAGATGCGATTTTTTTGCCGTTACTATTATTAATACGAGGAATTTTTCCGTTAGTGATTATTTGTAAATAGTTTAATGGAGTTTGATGTGTCTAATCATTGTTATAATAGTGATTCGAAGTGCTTTGTTGCTAACTTGGATGGACAAAAATAAGCTAACTATTTCATTTGGGCTTAACTTAGGGTTTCGTTCTTTTTCTTAAAAGGTTTCTGCAGCATGATTTGAGTAAAAACTTGCGTGATTTGTACATTGGCAACATCTATTCTACTTAATTTACTGGCTGAAGGATTTTCACACCCAATGCTACCAATTGAAAACAAAGTAGTGTTGTCAAACCTTCAATCTTGAAGTTCATCAAATAAGAAATTGGATTGTTCATTCAGAAATATTAGATCACTATGTTACTTGTTCCTTTTTTTTCTTCTCAAAGGCATTAGATTATTGTGTGCGCTTTCCAGTTCTCCAGCCAATGCTACATCATTTACTTGATAATGTGAGTCCCCTAGTGGTGTCATGCCAGCTTAGGTACCTTGACTAATCCACTAGGTAACATTCTACACTGAAGCAAATCAGCTCTTTCCAGGTGTTATAACTGGTAGTTTGAACCTGGAATCTTCAGGTTGATACTTCTATGCCTAAACTATTCAGCTATCTTCAGGTGTTATAACTGGTAGTTTGAACCTGGAAGCCTTAATAGCTGTATTCTCTAGGATACTGTTCCGCTAAGAAAATTACAATTATCAGTGAAGCCTTGTGAGATTGATATTATCTTCCATCGATCATAAACAAAAACTTCAGTAGAAGAACTAAGTATTGATATGGAAAATTAGGTAAGGGACCTTGAAAGAAAAAAAAGTAAGTTACTGGAATGACCACAAATATGAAAAGGCATTACTGAGGTCCAAAAGTTAGTTCTAAAATCCCCGGAGTTCAAATATCTGTTTATTATGTTGTTTTCTCTTCTCCAGAGTTCACATATCAGTTTATTATATTGTTTTCTCCTCTTCTCTGGAGTTCACATATCTGTTTATTATGTTGCATTCTCCTCTTCTCCGGAGTTCACATATCTGTTTAGCTTTCTTCTCTTCTATTCGACCGGAAATGATTTCTTAAGTGCATTGCTGACGTGGCTCATAAAAACCCTTTACACTGCTGGTATTTCAGATCTAATCCATATATGATGTCTGAGGAAGCTGCTAGAGATCTCATTCCACTACCTGAAGCTGGGATGAACAATGAGATCCCCAGTAATGGGAGTGTTCCAGCAATAAGGGTTGAGAGCATTGATAAAAATTCAAAAGATAAGGAAAGAGAAAATCCTGCCTTACTGGTTGGACCTTGCCTTAATGGAGACGGTAAGGTGAATACTGGGGCAGAGGTGGGAAATTCTGAAGTGGAATACATAGAATCTGAGAATTTGAATGATGTAGAAGATGTTGACACAAGTCTCAAGGTAATGATTCCTGATATAGTTTGATGTTTCATTTTAGTATTTTGCATCTCGGTTTTGCTTCTTTATATTGGTTTACAAAAGTCTCTTTTCAATGTCTTTGCCTCTCCTTTTTCATTTGTAGACACTGTTGACTGGGCTTGACTCCAAGGACTGGGTTTTAGTCTGTGAGGCACTCAATGACGTTCGGCGTCTGTCCCTATTTCACAAAGAAGCAATGGTTGATATGTTGTAAGTCTTTGTCACCTAGGATATAACTTGAAAGATGTTTGATCATGATGTTCTAGCTGGTTAGACATATCTTTGTGTATGCTCCCCTTTTGTTCTGTCTGGTCTTACTTATGCTTATTACTTAAAATGAGCAGGAGAAATGTGATC</genome_strand>
        <mrna_strand>TCGTTGAAGAGGAGAGTTCAAAATCATTTCGATTTGCTGCTTTACCCGATCATTTCACCGCATTTTCCTG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATCTAATCCATATATGATGTCTGAGGAAGCTGCTAGAGATCTCATTCCACTACCTGAAGCTGGGATGAACAATGAGATCCCCAGTAATGGGAGTGTTCCAGCAATAAGGGTTGAGAGCATTGATAAAAATTCAAAAGATAAGGAAAGAGAAAATCCTGCCTTACTGGTTGGACCTTGCCTTAATGGAGACGGTAAGGTGAATACTGGGGCAGAGGTGGGAAATTCTGAAGTGGAATACATAGAATCTGAGAATTTGAATGATGTAGAAGATGTTGACACAAGTCTCAAG.........................................................................................................................ACACTGTTGACTGGGCTTGACTCCAAGGACTGGGTTTTAGTCTGTGAGGCACTCAATGACGTTCGGCGTCTGTCCCTATTTCACAAAGAAGCAATGGTTGATATGTT......................................................................................................................................GAGAAATGTGATC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0236E02-u8qcS/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E687715" ref_strand="+" ref_description="SGN-E687715 [T3_tus_79_J09]">
      <seq>tttttacccgatcatttcaccgcattttcctgatctaatccatatatgatgtctgaggaagctgctagagatctcattccactacctgaagctgggatgaacaatgagatccccagtaatgggagtgttccagcaataagggttgagagcattgataaaaattcaaaagataaggaaagagaaaatcctgccttactggttggaccttgccttaatggagacggtaaggtgaatactggggcagaggtgggaaattctgaagtggaatacatagaatctgagaatttgaatgatttataagatgttgacacaagtctcaagacactgttgactgggcttgactccaaggactgggttttagtctgtgaggcactcaatgacgttcggcgtctgtccctatttcacaaagaagcaatggttgatatgttgagaaatgtgatctcccttgttgtgaaatctttgaaaaatccgagaagtgctgtttgtaaagactgctaatatggcatcagctgacattttcaaaagcataactgtgacaccatagttgacttgatggatccactgcttgtacaacttcttctgaagtcttcacaagacaagcgatttgtttgcgaggcacctgaaaaagctc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0236E02-u8qcS/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0236E02.1" temp_strand="+" temp_description="C02HBa0236E02.1  AC215430.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0236E02 sequenced_by:kribb upload_account_name:korea">
        <position start="108445" stop="111480"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="108743" g_stop="108774" g_length="32"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="32" r_length="32" r_score="0.938"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="108775" i_stop="110227" i_length="1453">
            <donor d_prob="0.999" d_score="0.00"/>
            <acceptor a_prob="0.912" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="110228" g_stop="110516" g_length="289"/>
          <reference_exon_boundary r_type="cDNA" r_start="33" r_stop="321" r_length="289" r_score="0.993"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="110517" i_stop="110637" i_length="121">
            <donor d_prob="0.999" d_score="0.96"/>
            <acceptor a_prob="0.985" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="110638" g_stop="110744" g_length="107"/>
          <reference_exon_boundary r_type="cDNA" r_start="322" r_stop="428" r_length="107" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="110745" i_stop="110878" i_length="134">
            <donor d_prob="0.878" d_score="1.00"/>
            <acceptor a_prob="0.849" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="110879" g_stop="111011" g_length="133"/>
          <reference_exon_boundary r_type="cDNA" r_start="429" r_stop="564" r_length="136" r_score="0.947"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="111012" i_stop="111113" i_length="102">
            <donor d_prob="0.949" d_score="0.92"/>
            <acceptor a_prob="0.785" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="111114" g_stop="111180" g_length="67"/>
          <reference_exon_boundary r_type="cDNA" r_start="565" r_stop="631" r_length="67" r_score="0.985"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0236E02.1" gen_strand="+" ref_id="SGN-E687715" ref_strand="+">
        <total_alignment_score>0.983</total_alignment_score>
        <cumulative_length_of_scored_exons>628</cumulative_length_of_scored_exons>
        <coverage percentage="0.995" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0236E02.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E687715" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="108743" e_stop="108774"/>
          <exon e_start="110228" e_stop="110516"/>
          <exon e_start="110638" e_stop="110744"/>
          <exon e_start="110879" e_stop="111011"/>
          <exon e_start="111114" e_stop="111180"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCTTTACCCGATCATTTCACCGCATTTTCCTGGTATGCTCAATCTTCGCTTACTCTGTTTATTTATTAGTTTATAGGTATGTTAAAGAGGTAGTATTGTACATTCGAATTACTAAAGCCCCTAAACATTGCATTTTTTGTAAATCGCTGATGGAGTAATCAAGTTGTATAGGTTTGTTGATTGTATTTGCTTTGAAGTTGCTAACTACGATCTGCGAAGGTTATTCTCTCTGAGATCTTGGCTATTCTACTTTAATACGTTTTGGATTGTTTTACTTTGTAGATAGTGCTTGTTGGAGTTGATTGTTCTGATCCTGTAATGTAGATGCGATTTTTTTGCCGTTACTATTATTAATACGAGGAATTTTTCCGTTAGTGATTATTTGTAAATAGTTTAATGGAGTTTGATGTGTCTAATCATTGTTATAATAGTGATTCGAAGTGCTTTGTTGCTAACTTGGATGGACAAAAATAAGCTAACTATTTCATTTGGGCTTAACTTAGGGTTTCGTTCTTTTTCTTAAAAGGTTTCTGCAGCATGATTTGAGTAAAAACTTGCGTGATTTGTACATTGGCAACATCTATTCTACTTAATTTACTGGCTGAAGGATTTTCACACCCAATGCTACCAATTGAAAACAAAGTAGTGTTGTCAAACCTTCAATCTTGAAGTTCATCAAATAAGAAATTGGATTGTTCATTCAGAAATATTAGATCACTATGTTACTTGTTCCTTTTTTTTCTTCTCAAAGGCATTAGATTATTGTGTGCGCTTTCCAGTTCTCCAGCCAATGCTACATCATTTACTTGATAATGTGAGTCCCCTAGTGGTGTCATGCCAGCTTAGGTACCTTGACTAATCCACTAGGTAACATTCTACACTGAAGCAAATCAGCTCTTTCCAGGTGTTATAACTGGTAGTTTGAACCTGGAATCTTCAGGTTGATACTTCTATGCCTAAACTATTCAGCTATCTTCAGGTGTTATAACTGGTAGTTTGAACCTGGAAGCCTTAATAGCTGTATTCTCTAGGATACTGTTCCGCTAAGAAAATTACAATTATCAGTGAAGCCTTGTGAGATTGATATTATCTTCCATCGATCATAAACAAAAACTTCAGTAGAAGAACTAAGTATTGATATGGAAAATTAGGTAAGGGACCTTGAAAGAAAAAAAAGTAAGTTACTGGAATGACCACAAATATGAAAAGGCATTACTGAGGTCCAAAAGTTAGTTCTAAAATCCCCGGAGTTCAAATATCTGTTTATTATGTTGTTTTCTCTTCTCCAGAGTTCACATATCAGTTTATTATATTGTTTTCTCCTCTTCTCTGGAGTTCACATATCTGTTTATTATGTTGCATTCTCCTCTTCTCCGGAGTTCACATATCTGTTTAGCTTTCTTCTCTTCTATTCGACCGGAAATGATTTCTTAAGTGCATTGCTGACGTGGCTCATAAAAACCCTTTACACTGCTGGTATTTCAGATCTAATCCATATATGATGTCTGAGGAAGCTGCTAGAGATCTCATTCCACTACCTGAAGCTGGGATGAACAATGAGATCCCCAGTAATGGGAGTGTTCCAGCAATAAGGGTTGAGAGCATTGATAAAAATTCAAAAGATAAGGAAAGAGAAAATCCTGCCTTACTGGTTGGACCTTGCCTTAATGGAGACGGTAAGGTGAATACTGGGGCAGAGGTGGGAAATTCTGAAGTGGAATACATAGAATCTGAGAATTTGAATGATGTAGAAGATGTTGACACAAGTCTCAAGGTAATGATTCCTGATATAGTTTGATGTTTCATTTTAGTATTTTGCATCTCGGTTTTGCTTCTTTATATTGGTTTACAAAAGTCTCTTTTCAATGTCTTTGCCTCTCCTTTTTCATTTGTAGACACTGTTGACTGGGCTTGACTCCAAGGACTGGGTTTTAGTCTGTGAGGCACTCAATGACGTTCGGCGTCTGTCCCTATTTCACAAAGAAGCAATGGTTGATATGTTGTAAGTCTTTGTCACCTAGGATATAACTTGAAAGATGTTTGATCATGATGTTCTAGCTGGTTAGACATATCTTTGTGTATGCTCCCCTTTTGTTCTGTCTGGTCTTACTTATGCTTATTACTTAAAATGAGCAGGAGAAATGTGATCTCCCTTGTTGTGAAATCTTTGAAAAATCCGAGAAGTGCTGTTTGT-AAGACTGCTATTATGGCATCAGCTGACATTTTC-AAAGCAT-ACTGTGACACCATAGTTGACTTGATGGATCCACTGGTAACTTTTCTCTTTTGTGACTTGTGTGACTGCCTTGGCAATATATTTTCACCTAATTTTACCTTGTTCTTGTGCTTATTATGTGACTGTTTCCTTGCTTAGCTTGTACAACTTCTTCTGAAGTCTTCACAAGACAAGCGATTTGTTTGCGAGGCAGCTGAAAAAGCTC</genome_strand>
        <mrna_strand>TTTTTACCCGATCATTTCACCGCATTTTCCTG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATCTAATCCATATATGATGTCTGAGGAAGCTGCTAGAGATCTCATTCCACTACCTGAAGCTGGGATGAACAATGAGATCCCCAGTAATGGGAGTGTTCCAGCAATAAGGGTTGAGAGCATTGATAAAAATTCAAAAGATAAGGAAAGAGAAAATCCTGCCTTACTGGTTGGACCTTGCCTTAATGGAGACGGTAAGGTGAATACTGGGGCAGAGGTGGGAAATTCTGAAGTGGAATACATAGAATCTGAGAATTTGAATGATTTATAAGATGTTGACACAAGTCTCAAG.........................................................................................................................ACACTGTTGACTGGGCTTGACTCCAAGGACTGGGTTTTAGTCTGTGAGGCACTCAATGACGTTCGGCGTCTGTCCCTATTTCACAAAGAAGCAATGGTTGATATGTT......................................................................................................................................GAGAAATGTGATCTCCCTTGTTGTGAAATCTTTGAAAAATCCGAGAAGTGCTGTTTGTAAAGACTGCTAATATGGCATCAGCTGACATTTTCAAAAGCATAACTGTGACACCATAGTTGACTTGATGGATCCACTG......................................................................................................CTTGTACAACTTCTTCTGAAGTCTTCACAAGACAAGCGATTTGTTTGCGAGGCACCTGAAAAAGCTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0236E02-u8qcS/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E375973" ref_strand="+" ref_description="SGN-E375973 [TUS-40-I16](-)">
      <seq>cattttcaaagcatactgtgacaccatagttgacttgatggatccactgcttgtacaacttcttctgaagtcttcacaagacaagcgatttgtttgcgaggcagctgaaaaagctctaaaagcaatgacaatgtgggtttctccatcgctgttgttaccgaagttgcaaccaaatttgaaacacagaaatcctagaattcgagcaaaagcttcaagctgcttttctcgaagtgtaccacgtctgggagtagagggaattaaagcatatggaattgagaacttgatccgaatagctgcatcgcagctcagtgaccagcttcctgagtcgagggaggccgctcgttcactgttgttagaactgcaaaatatctacgaaaaagcattcaatgttatccccccaccagtagtgaatgaagacccagaaacaattaccgtgagtgaggacccagaaacaatatcctgggagcatttctgtcaatcaaagctctcacctttgagtgctcaagcagtttttcgtgtaaccaatctcactagggagggtattgttttaggttcatagtatttgttcaagcaatgagctataattcaccattgtcctccattttttggtttggtttcttatacctgtatataccatgaaaggtttcaggtgtttgcgaggcagttagaccatatatagagctatagttctatagtttcttgaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0236E02-u8qcS/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0236E02.1" temp_strand="+" temp_description="C02HBa0236E02.1  AC215430.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0236E02 sequenced_by:kribb upload_account_name:korea">
        <position start="110663" stop="112840"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="110963" g_stop="111011" g_length="49"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="49" r_length="49" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="111012" i_stop="111113" i_length="102">
            <donor d_prob="0.949" d_score="1.00"/>
            <acceptor a_prob="0.785" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="111114" g_stop="111308" g_length="195"/>
          <reference_exon_boundary r_type="cDNA" r_start="50" r_stop="244" r_length="195" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="111309" i_stop="112077" i_length="769">
            <donor d_prob="0.975" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="112078" g_stop="112544" g_length="467"/>
          <reference_exon_boundary r_type="cDNA" r_start="245" r_stop="711" r_length="467" r_score="0.987"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0236E02.1" gen_strand="+" ref_id="SGN-E375973" ref_strand="+">
        <total_alignment_score>0.991</total_alignment_score>
        <cumulative_length_of_scored_exons>711</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0236E02.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E375973" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="110963" e_stop="111011"/>
          <exon e_start="111114" e_stop="111308"/>
          <exon e_start="112078" e_stop="112544"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CATTTTCAAAGCATACTGTGACACCATAGTTGACTTGATGGATCCACTGGTAACTTTTCTCTTTTGTGACTTGTGTGACTGCCTTGGCAATATATTTTCACCTAATTTTACCTTGTTCTTGTGCTTATTATGTGACTGTTTCCTTGCTTAGCTTGTACAACTTCTTCTGAAGTCTTCACAAGACAAGCGATTTGTTTGCGAGGCAGCTGAAAAAGCTCTAAAAGCAATGACAATGTGGGTTTCTCCATCGCTGTTGTTACCGAAGTTGCAACCAAATTTGAAACACAGAAATCCTAGAATTCGAGCAAAAGCTTCAAGCTGCTTTTCTCGAAGTGTACCACGTCTGGTGAGAGTTCAAAGTTCTAAAATCTCTTCCTTATGCACCCTGACTTGTGAATTTTAGTAATTACTATTTTCATTCTTACATTTTTTTCCTGCAATTGTTGTTAACGTAGTTTGTTTGTTATTTGCTGACTAATATCTTTTCCCTTGACTGTTTTATAGACAATATCTTGATACAAACTCCACCCTAGGAAACCCTTCTTGAGAGCGTTTTAAGAATTACTTCTTGAGAATGTTTACTAATTACTTTACTGGTTAAAGGAATGGATAGGTAATAATTTGTTTATCTGCTGACTCTGACTAAGATCTTTCCCTTGGCTATGTTTTATTGACAATGCCTTGATGCTGAACTCTACCCTAGTAGGACACCCTTCTTGAGAGCGTTTGAAGAATGAATTTTTCTGATTAAGGAAATGACTAGGTAACAATTTGTCAGTCATTTGAGTATATTAGGAACTTTTACATGGTTTCTCCAATAAGTTTTGTTCACAATGCTATAATTAACCGCTTTCAATACCCTTCTGGTGGTTATTTTATTATTCAGCAGTATAAATTTGTTCTTGTTGAATGAAACAAGAAAGATTACATATTAACGGCCCCTTAACATGGAAACATTTTCTGGCATTTGTGTCTTTTCATGTATGATCATATCACTGAAATGTGAAAGAGGAATAAACTTTGTCCTGTTCTTAGTTTTTGTTTTCTAGCTGGTTGCCCAATTCTCTTTTTACTACTAGATCTGGTCCTTACTAACAGAGTTGCATGTTTTACAGGGAGTAGAGGGAATTAAAGCATATGGAATTGAGAACTTGATCCGAATAGCTGCATCGCAGCTCAGTGACCAGCTTCCTGAGTCGAGGGAGGCCGCTCGTTCACTGTTGTTAGAACTGCAAAATATCTACGAAAAAGCATTCAATGTTATCCCCCCACCAGTAGTGAATGAAGACCCAGAAACAATTACCGTGAGTGAGGACCCAGAAACAATATCCTGGGAGCATTTCTGTCAATCAAAGCTCTCACCTTTGAGTGCTCAAGCAGTTCTTCGTGTAACCAATCTCACTAGGGAGGGTATTGTTTTAGGTTCATAGTATTTGTTCAAGCAATGAGCTATAATTCACCATTGTCCTCCATTTTTTGGTTTGGTTTCTTATACCTGTATATACCATGAAAGGTTTCAGGTGTTTGCGAGGCAGTTAGACCATATATAGAGCTATAGTTCTATAGTTTCTTGAAATATGGT</genome_strand>
        <mrna_strand>CATTTTCAAAGCATACTGTGACACCATAGTTGACTTGATGGATCCACTG......................................................................................................CTTGTACAACTTCTTCTGAAGTCTTCACAAGACAAGCGATTTGTTTGCGAGGCAGCTGAAAAAGCTCTAAAAGCAATGACAATGTGGGTTTCTCCATCGCTGTTGTTACCGAAGTTGCAACCAAATTTGAAACACAGAAATCCTAGAATTCGAGCAAAAGCTTCAAGCTGCTTTTCTCGAAGTGTACCACGTCTG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGAGTAGAGGGAATTAAAGCATATGGAATTGAGAACTTGATCCGAATAGCTGCATCGCAGCTCAGTGACCAGCTTCCTGAGTCGAGGGAGGCCGCTCGTTCACTGTTGTTAGAACTGCAAAATATCTACGAAAAAGCATTCAATGTTATCCCCCCACCAGTAGTGAATGAAGACCCAGAAACAATTACCGTGAGTGAGGACCCAGAAACAATATCCTGGGAGCATTTCTGTCAATCAAAGCTCTCACCTTTGAGTGCTCAAGCAGTTTTTCGTGTAACCAATCTCACTAGGGAGGGTATTGTTTTAGGTTCATAGTATTTGTTCAAGCAATGAGCTATAATTCACCATTGTCCTCCATTTTTTGGTTTGGTTTCTTATACCTGTATATACCATGAAAGGTTTCAGGTGTTTGCGAGGCAGTTAGACCATATATAGAGCTATAGTTCTATAGTTTCTTGAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0236E02-u8qcS/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E253024" ref_strand="-" ref_description="SGN-E253024 [cLEG-25-N10]">
      <seq>gttgttagaactgcaaaatatttacgaaaaagcattcaatgttatccccccaccagtagtgaatgaagacccagaaacaattcccgtgagtgaggacccagaaacaatatcctgggagcatttctgtcaatcaaagctctcacctttgagtgctcaagcagttcttcgtgtaaccaatctcactagggagggtattgttttaggttcatagtatttgttcaagcaatgagctataattcaccattgtcctccattttttggtttggtttcttatacctgtatataccatgaaaggtttcaggtgtttgcgaggcagttagaccatatatagagctatagttctatagtttcttgaaatatggtttagattacgtttgcattatacttaaagtcattcatgaatgcttgctttgcattgcagtatacatgtaattgtgctcgttcatttttcccatggtatgttaatgattgaaaagcaaaaaaaaaaaaaaaaaaaattaactcg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0236E02-u8qcS/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0236E02.1" temp_strand="+" temp_description="C02HBa0236E02.1  AC215430.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0236E02 sequenced_by:kribb upload_account_name:korea">
        <position start="111882" stop="112961"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="112182" g_stop="112660" g_length="479"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="479" r_length="479" r_score="0.996"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="480" polyA_stop="498"/>
      <MATCH_line gen_id="C02HBa0236E02.1" gen_strand="+" ref_id="SGN-E253024" ref_strand="-">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>479</cumulative_length_of_scored_exons>
        <coverage percentage="0.949" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0236E02.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E253024" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="112182" e_stop="112660"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTTGTTAGAACTGCAAAATATCTACGAAAAAGCATTCAATGTTATCCCCCCACCAGTAGTGAATGAAGACCCAGAAACAATTACCGTGAGTGAGGACCCAGAAACAATATCCTGGGAGCATTTCTGTCAATCAAAGCTCTCACCTTTGAGTGCTCAAGCAGTTCTTCGTGTAACCAATCTCACTAGGGAGGGTATTGTTTTAGGTTCATAGTATTTGTTCAAGCAATGAGCTATAATTCACCATTGTCCTCCATTTTTTGGTTTGGTTTCTTATACCTGTATATACCATGAAAGGTTTCAGGTGTTTGCGAGGCAGTTAGACCATATATAGAGCTATAGTTCTATAGTTTCTTGAAATATGGTTTAGATTACGTTTGCATTATACTTAAAGTCATTCATGAATGCTTGCTTTGCATTGCAGTATACATGTAATTGTGCTCGTTCATTTTTCCCATGGTATGTTAATGATTGAAAAGCAA</genome_strand>
        <mrna_strand>GTTGTTAGAACTGCAAAATATTTACGAAAAAGCATTCAATGTTATCCCCCCACCAGTAGTGAATGAAGACCCAGAAACAATTCCCGTGAGTGAGGACCCAGAAACAATATCCTGGGAGCATTTCTGTCAATCAAAGCTCTCACCTTTGAGTGCTCAAGCAGTTCTTCGTGTAACCAATCTCACTAGGGAGGGTATTGTTTTAGGTTCATAGTATTTGTTCAAGCAATGAGCTATAATTCACCATTGTCCTCCATTTTTTGGTTTGGTTTCTTATACCTGTATATACCATGAAAGGTTTCAGGTGTTTGCGAGGCAGTTAGACCATATATAGAGCTATAGTTCTATAGTTTCTTGAAATATGGTTTAGATTACGTTTGCATTATACTTAAAGTCATTCATGAATGCTTGCTTTGCATTGCAGTATACATGTAATTGTGCTCGTTCATTTTTCCCATGGTATGTTAATGATTGAAAAGCAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0236E02-u8qcS/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E300805" ref_strand="+" ref_description="SGN-E300805 [cLEW-8-E8]">
      <seq>ttttttgaacaagatatataccgtagtaatatagaattataacattacatctatatataattcattacattcccacaaaactcaaacacaagatcctattttgcatcagagctacagaaatcaagaaaggtctcacacaaacaagtttgcatattgttatcaaatcataagaagttagtaacaaacaagtaacacacacacaatacagcgttttggtcttatctacactgtatacaagtgacctctaaaagacaagattgccgtgttgcacgacatctcaggagtaccagaaagcaggggggaaaactacagccatgctggattcttcagaggggtaacaatagctttgacttgcaagtagttacttaggctgtagactcccttctctcttgcatgtccactcatcttataaccaccaaacggaatggcagcatcaaagatgttaaagcagttgacccacactgtccctactctaagggctcgagatattgtgtaggctgcatctatattctgggtaaaaacacccgctgccaacccataatgtgac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0236E02-u8qcS/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0236E02.1" temp_strand="+" temp_description="C02HBa0236E02.1  AC215430.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0236E02 sequenced_by:kribb upload_account_name:korea">
        <position start="117149" stop="118294"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="117449" g_stop="117994" g_length="546"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="547" r_length="547" r_score="0.987"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0236E02.1" gen_strand="+" ref_id="SGN-E300805" ref_strand="+">
        <total_alignment_score>0.987</total_alignment_score>
        <cumulative_length_of_scored_exons>546</cumulative_length_of_scored_exons>
        <coverage percentage="0.998" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0236E02.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E300805" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="117449" e_stop="117994"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTCATTGAACAAGATATATACCGTAGTAATATAGAATTATAACATTACATCTATATATAATTCATTACATTCCCACAAAACTCAAACACAAGATCCTATTTTGCATCAGAGCTACAGAAATCAAGAAAGGTCTCACACAAACAAGTTTGCATATTGTTATCAAATCATAAGAAGTTAGTAACAAACAA-TAACACACACACAATACAGCGTTTTGGTCTTATCTACACTGTATACAAGTGACCTCTAAAAGACAAGATTGCCGTGTTGCACGACATCTCAGGAGTACCAGAAAGCAGGGGGGAAAACTACAGCCATGCTGGATTCTTCAGAGGGGTAACAATAGCTTTGACTTGCAAGTAGTTACTTAGGCTGTAGACTCCCTTCTCTCTTCCATGTCCACTCATCTTATAACCACCAAACGGAATGGCAGCATCAAAGATGTTAAAGCAGTTAACCCACACTGTCCCTACTCTAAGGGCTCGAGATATTGTGTTGGCTGCATCTATATTCTGGGTAAAAACACCCGCTGCCAACCCATAATGTGAC</genome_strand>
        <mrna_strand>TTTTTTGAACAAGATATATACCGTAGTAATATAGAATTATAACATTACATCTATATATAATTCATTACATTCCCACAAAACTCAAACACAAGATCCTATTTTGCATCAGAGCTACAGAAATCAAGAAAGGTCTCACACAAACAAGTTTGCATATTGTTATCAAATCATAAGAAGTTAGTAACAAACAAGTAACACACACACAATACAGCGTTTTGGTCTTATCTACACTGTATACAAGTGACCTCTAAAAGACAAGATTGCCGTGTTGCACGACATCTCAGGAGTACCAGAAAGCAGGGGGGAAAACTACAGCCATGCTGGATTCTTCAGAGGGGTAACAATAGCTTTGACTTGCAAGTAGTTACTTAGGCTGTAGACTCCCTTCTCTCTTGCATGTCCACTCATCTTATAACCACCAAACGGAATGGCAGCATCAAAGATGTTAAAGCAGTTGACCCACACTGTCCCTACTCTAAGGGCTCGAGATATTGTGTAGGCTGCATCTATATTCTGGGTAAAAACACCCGCTGCCAACCCATAATGTGAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0236E02-u8qcS/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E434263" ref_strand="+" ref_description="SGN-E434263 [STM-59-N11]">
      <seq>caaacctaattttttttttagatatatacctttctaatatagaagtataacattgcatctatctatcaattcattacattcccacaaaactcaaaaacaagatcctattttgcatcagagctacagaaatacaagaaaggtttcacacaaacaaggttgcatattgttatcaaatcataaaaagttagtaacaaacaataacacaaacacaatatagcgttttggtcttatctacactgtatacaagtgacctcaaaaaaacaagattgccgtgttgcatgacatctcaggagtatcagaaagcaggagggaaaactacagccatgttggattcttcagaggagtaacaatagctttgacttgcaagtagttacttaggctgtagactcccttttctcttccatgtccactcaccttataaccaccaaaaggaatggcagcatcaaagatattaaagcagtaaacccacactgtccctactctaagggctcgagatattgtgttggctgcatctatattctgggtaaaaacacccgccgccaacccataatgtgacgagtttgcccttcgaatgacctcttcaacatccctgtttgtttcgaggtcagattcagtgttaataaacaaaatacaagcacagctacattacaaatgaaatgtaatctcactagaatttcaagagggactgcactggtccaaatatctcatctctggcaatcagcatggtatcctggacatttg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0236E02-u8qcS/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0236E02.1" temp_strand="+" temp_description="C02HBa0236E02.1  AC215430.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0236E02 sequenced_by:kribb upload_account_name:korea">
        <position start="117160" stop="118479"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="117462" g_stop="118162" g_length="701"/>
          <reference_exon_boundary r_type="cDNA" r_start="22" r_stop="724" r_length="703" r_score="0.950"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="118163" i_stop="118271" i_length="109">
            <donor d_prob="0.720" d_score="1.00"/>
            <acceptor a_prob="0.982" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="118272" g_stop="118288" g_length="17"/>
          <reference_exon_boundary r_type="cDNA" r_start="725" r_stop="741" r_length="17" r_score="0.706"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="19" polyA_stop="9"/>
      <MATCH_line gen_id="C02HBa0236E02.1" gen_strand="+" ref_id="SGN-E434263" ref_strand="+">
        <total_alignment_score>0.950</total_alignment_score>
        <cumulative_length_of_scored_exons>718</cumulative_length_of_scored_exons>
        <coverage percentage="0.969" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0236E02.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E434263" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="117462" e_stop="118162"/>
          <exon e_start="118272" e_stop="118288"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATATATACCGTAGTAATATAGAATTATAACATTACATCTATATAT-AATTCATTACATTCCCACAAAACTCAAACACAAGATCCTATTTTGCATCAGAGCTACAGAAAT-CAAGAAAGGTCTCACACAAACAAGTTTGCATATTGTTATCAAATCATAAGAAGTTAGTAACAAACAATAACACACACACAATACAGCGTTTTGGTCTTATCTACACTGTATACAAGTGACCTCTAAAAGACAAGATTGCCGTGTTGCACGACATCTCAGGAGTACCAGAAAGCAGGGGGGAAAACTACAGCCATGCTGGATTCTTCAGAGGGGTAACAATAGCTTTGACTTGCAAGTAGTTACTTAGGCTGTAGACTCCCTTCTCTCTTCCATGTCCACTCATCTTATAACCACCAAACGGAATGGCAGCATCAAAGATGTTAAAGCAGTTAACCCACACTGTCCCTACTCTAAGGGCTCGAGATATTGTGTTGGCTGCATCTATATTCTGGGTAAAAACACCCGCTGCCAACCCATAATGTGACGAGTTTGCCCTTCGGATGACCTCTTCAACATCCCTGTTTGTTTCAAGGTCAGGTTCAGTGTTAATAAACAAAATACAAGCACAGATACAATACAAATGAAATGTAATCTCACTTGAATTTCAAGAGGGACTGCACTGGTCCAAATATCTCATCTCTGGCAATCAGCATGTTATCCTAAATAGTTGAAAAATAATTTTAAACAAAACAATTAAATGTCATCAGTACGATGCTCATCTTTTTCACCTTACGTATGGATATATTCTATGGACAATGGCAGTTATACCTGGACATTTG</genome_strand>
        <mrna_strand>ATATATACCTTTCTAATATAGAAGTATAACATTGCATCTATCTATCAATTCATTACATTCCCACAAAACTCAAAAACAAGATCCTATTTTGCATCAGAGCTACAGAAATACAAGAAAGGTTTCACACAAACAAGGTTGCATATTGTTATCAAATCATAAAAAGTTAGTAACAAACAATAACACAAACACAATATAGCGTTTTGGTCTTATCTACACTGTATACAAGTGACCTCAAAAAAACAAGATTGCCGTGTTGCATGACATCTCAGGAGTATCAGAAAGCAGGAGGGAAAACTACAGCCATGTTGGATTCTTCAGAGGAGTAACAATAGCTTTGACTTGCAAGTAGTTACTTAGGCTGTAGACTCCCTTTTCTCTTCCATGTCCACTCACCTTATAACCACCAAAAGGAATGGCAGCATCAAAGATATTAAAGCAGTAAACCCACACTGTCCCTACTCTAAGGGCTCGAGATATTGTGTTGGCTGCATCTATATTCTGGGTAAAAACACCCGCCGCCAACCCATAATGTGACGAGTTTGCCCTTCGAATGACCTCTTCAACATCCCTGTTTGTTTCGAGGTCAGATTCAGTGTTAATAAACAAAATACAAGCACAGCTACATTACAAATGAAATGTAATCTCACTAGAATTTCAAGAGGGACTGCACTGGTCCAAATATCTCATCTCTGGCAATCAGCAT.............................................................................................................GGTATCCTGGACATTTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0236E02-u8qcS/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E355126" ref_strand="+" ref_description="SGN-E355126 [cTOS-18-N12]">
      <seq>tcgagtctggaggggaaaaattgggttccaagggcttctatgtccaacctactgtcttctcaaatgtccaggataacatgctgattgccagagatgagatatttggaccagtgcagtccctcttgaaattcaaggatgttgaagaggtcatccgaagggcaaactcgtcacattatgggttggcagcgggtgtttttacccagaatatagatgcagccaacacaatatctcgagcccttagagtagggacagtgtgggttaactgctttaacatctttgatgctgccattccgtttggtggttataagatgagtggacatggaagagagaagggagtctacagcctaagtaactacttgcaagtcaaagctattgttacccctctgaagaatccagcatggctgtagttttcccccctgctttctggtactcctgagatgtcgtgcaacacggcaatcttgtcttttagaggtcacttgtatacagtgtagataagaccaaaacgctgtattgtgtgtgtgttattgtttgttactaacttcttatgatttgataacaatatgcaaacttgtttgtgtgagacctttcttgatttctgtagctctgatgcaaaataggatcttgtgtttgagttttgtgggaaaatgtatgattatatatagatgtaatgttataattctatattactaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0236E02-u8qcS/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0236E02.1" temp_strand="-" temp_description="C02HBa0236E02.1  AC215430.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0236E02 sequenced_by:kribb upload_account_name:korea">
        <position start="118648" stop="117172"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="118348" g_stop="118278" g_length="71"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="71" r_length="71" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="118277" i_stop="118169" i_length="109">
            <donor d_prob="0.961" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="118168" g_stop="118107" g_length="62"/>
          <reference_exon_boundary r_type="cDNA" r_start="72" r_stop="133" r_length="62" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="118106" i_stop="118028" i_length="79">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.920" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="118027" g_stop="117463" g_length="565"/>
          <reference_exon_boundary r_type="cDNA" r_start="134" r_stop="698" r_length="565" r_score="0.977"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0236E02.1" gen_strand="-" ref_id="SGN-E355126" ref_strand="+">
        <total_alignment_score>0.981</total_alignment_score>
        <cumulative_length_of_scored_exons>698</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0236E02.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E355126" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="118348" e_stop="118278"/>
          <exon e_start="118168" e_stop="118107"/>
          <exon e_start="118027" e_stop="117463"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCGAGTCTGGAGGGGAAAAATTGGGTTCCAAGGGCTTCTATGTCCAACCTACTGTCTTCTCAAATGTCCAGGTATAACTGCCATTGTCCATAGAATATATCCATACGTAAGGTGAAAAAGATGAGCATCGTACTGATGACATTTAATTGTTTTGTTTAAAATTATTTTTCAACTATTTAGGATAACATGCTGATTGCCAGAGATGAGATATTTGGACCAGTGCAGTCCCTCTTGAAATTCAAGTGAGATTACATTTCATTTGTATTGTATCTGTGCTTGTATTTTGTTTATTAACACTGAACCTGACCTTGAAACAAACAGGGATGTTGAAGAGGTCATCCGAAGGGCAAACTCGTCACATTATGGGTTGGCAGCGGGTGTTTTTACCCAGAATATAGATGCAGCCAACACAATATCTCGAGCCCTTAGAGTAGGGACAGTGTGGGTTAACTGCTTTAACATCTTTGATGCTGCCATTCCGTTTGGTGGTTATAAGATGAGTGGACATGGAAGAGAGAAGGGAGTCTACAGCCTAAGTAACTACTTGCAAGTCAAAGCTATTGTTACCCCTCTGAAGAATCCAGCATGGCTGTAGTTTTCCCCCCTGCTTTCTGGTACTCCTGAGATGTCGTGCAACACGGCAATCTTGTCTTTTAGAGGTCACTTGTATACAGTGTAGATAAGACCAAAACGCTGTATTGTGTGTGTGTTATTGTTTGTTACTAACTTCTTATGATTTGATAACAATATGCAAACTTGTTTGTGTGAGACCTTTCTTGATTTCTGTAGCTCTGATGCAAAATAGGATCTTGTGTTTGAGTTTTGTGGGAATGTAATGAATTATATATAGATGTAATGTTATAATTCTATATTACTACGGTATATA</genome_strand>
        <mrna_strand>TCGAGTCTGGAGGGGAAAAATTGGGTTCCAAGGGCTTCTATGTCCAACCTACTGTCTTCTCAAATGTCCAG.............................................................................................................GATAACATGCTGATTGCCAGAGATGAGATATTTGGACCAGTGCAGTCCCTCTTGAAATTCAA...............................................................................GGATGTTGAAGAGGTCATCCGAAGGGCAAACTCGTCACATTATGGGTTGGCAGCGGGTGTTTTTACCCAGAATATAGATGCAGCCAACACAATATCTCGAGCCCTTAGAGTAGGGACAGTGTGGGTTAACTGCTTTAACATCTTTGATGCTGCCATTCCGTTTGGTGGTTATAAGATGAGTGGACATGGAAGAGAGAAGGGAGTCTACAGCCTAAGTAACTACTTGCAAGTCAAAGCTATTGTTACCCCTCTGAAGAATCCAGCATGGCTGTAGTTTTCCCCCCTGCTTTCTGGTACTCCTGAGATGTCGTGCAACACGGCAATCTTGTCTTTTAGAGGTCACTTGTATACAGTGTAGATAAGACCAAAACGCTGTATTGTGTGTGTGTTATTGTTTGTTACTAACTTCTTATGATTTGATAACAATATGCAAACTTGTTTGTGTGAGACCTTTCTTGATTTCTGTAGCTCTGATGCAAAATAGGATCTTGTGTTTGAGTTTTGTGGGAAAATGTATGATTATATATAGATGTAATGTTATAATTCTATATTACTAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0236E02-u8qcS/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E349395" ref_strand="+" ref_description="SGN-E349395 [cTOS-1-F5]">
      <seq>tcgagtctggaggggaaaaattgggttccaagggcttctatgtccaacctactgtcttctcaaatgtccaggataacatgctgattgccagagatgagatatttggaccagtgcagtccctcttgaaattcaaggatgttgaagaggtcatccgaagggcaaactcgtcacattatgggttggcagcgggtgtttttacccagaatatagatgcagccaacacaatatctcgagcccttagagtagggacagtgtgggttaactgctttaacatctttgatgctgccattccgtttggtggttataagatgagtggacatggaagagagaagggagtctacagcctaagtaactacttgcaagtcaaagctattgttacccctctgaagaatccagcatggctgtagttttcccccctgctttctggtactcctgagatgtcgtgcaacacggcaatcttgtcttttagaggtcacttgtatacagtgtagataagaccaaaacgctgtattgtgtgtgtgttattgtttgttactaacttcttatgatttgataacaatatgcaaacttgtttgtgtgagacctttcttgatttctgtagctctgatgcaaaataggatcttgtgtttgagttttgtgggaatgtaatgaattatatatagatgtaatgttataattctatattactaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0236E02-u8qcS/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0236E02.1" temp_strand="-" temp_description="C02HBa0236E02.1  AC215430.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0236E02 sequenced_by:kribb upload_account_name:korea">
        <position start="118648" stop="117172"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="118348" g_stop="118278" g_length="71"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="71" r_length="71" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="118277" i_stop="118169" i_length="109">
            <donor d_prob="0.961" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="118168" g_stop="118107" g_length="62"/>
          <reference_exon_boundary r_type="cDNA" r_start="72" r_stop="133" r_length="62" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="118106" i_stop="118028" i_length="79">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.920" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="118027" g_stop="117463" g_length="565"/>
          <reference_exon_boundary r_type="cDNA" r_start="134" r_stop="698" r_length="565" r_score="0.989"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0236E02.1" gen_strand="-" ref_id="SGN-E349395" ref_strand="+">
        <total_alignment_score>0.991</total_alignment_score>
        <cumulative_length_of_scored_exons>698</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0236E02.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E349395" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="118348" e_stop="118278"/>
          <exon e_start="118168" e_stop="118107"/>
          <exon e_start="118027" e_stop="117463"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCGAGTCTGGAGGGGAAAAATTGGGTTCCAAGGGCTTCTATGTCCAACCTACTGTCTTCTCAAATGTCCAGGTATAACTGCCATTGTCCATAGAATATATCCATACGTAAGGTGAAAAAGATGAGCATCGTACTGATGACATTTAATTGTTTTGTTTAAAATTATTTTTCAACTATTTAGGATAACATGCTGATTGCCAGAGATGAGATATTTGGACCAGTGCAGTCCCTCTTGAAATTCAAGTGAGATTACATTTCATTTGTATTGTATCTGTGCTTGTATTTTGTTTATTAACACTGAACCTGACCTTGAAACAAACAGGGATGTTGAAGAGGTCATCCGAAGGGCAAACTCGTCACATTATGGGTTGGCAGCGGGTGTTTTTACCCAGAATATAGATGCAGCCAACACAATATCTCGAGCCCTTAGAGTAGGGACAGTGTGGGTTAACTGCTTTAACATCTTTGATGCTGCCATTCCGTTTGGTGGTTATAAGATGAGTGGACATGGAAGAGAGAAGGGAGTCTACAGCCTAAGTAACTACTTGCAAGTCAAAGCTATTGTTACCCCTCTGAAGAATCCAGCATGGCTGTAGTTTTCCCCCCTGCTTTCTGGTACTCCTGAGATGTCGTGCAACACGGCAATCTTGTCTTTTAGAGGTCACTTGTATACAGTGTAGATAAGACCAAAACGCTGTATTGTGTGTGTGTTATTGTTTGTTACTAACTTCTTATGATTTGATAACAATATGCAAACTTGTTTGTGTGAGACCTTTCTTGATTTCTGTAGCTCTGATGCAAAATAGGATCTTGTGTTTGAGTTTTGTGGGAATGTAATGAATTATATATAGATGTAATGTTATAATTCTATATTACTACGGTATATA</genome_strand>
        <mrna_strand>TCGAGTCTGGAGGGGAAAAATTGGGTTCCAAGGGCTTCTATGTCCAACCTACTGTCTTCTCAAATGTCCAG.............................................................................................................GATAACATGCTGATTGCCAGAGATGAGATATTTGGACCAGTGCAGTCCCTCTTGAAATTCAA...............................................................................GGATGTTGAAGAGGTCATCCGAAGGGCAAACTCGTCACATTATGGGTTGGCAGCGGGTGTTTTTACCCAGAATATAGATGCAGCCAACACAATATCTCGAGCCCTTAGAGTAGGGACAGTGTGGGTTAACTGCTTTAACATCTTTGATGCTGCCATTCCGTTTGGTGGTTATAAGATGAGTGGACATGGAAGAGAGAAGGGAGTCTACAGCCTAAGTAACTACTTGCAAGTCAAAGCTATTGTTACCCCTCTGAAGAATCCAGCATGGCTGTAGTTTTCCCCCCTGCTTTCTGGTACTCCTGAGATGTCGTGCAACACGGCAATCTTGTCTTTTAGAGGTCACTTGTATACAGTGTAGATAAGACCAAAACGCTGTATTGTGTGTGTGTTATTGTTTGTTACTAACTTCTTATGATTTGATAACAATATGCAAACTTGTTTGTGTGAGACCTTTCTTGATTTCTGTAGCTCTGATGCAAAATAGGATCTTGTGTTTGAGTTTTGTGGGAATGTAATGAATTATATATAGATGTAATGTTATAATTCTATATTACTAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0236E02-u8qcS/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E542978" ref_strand="+" ref_description="SGN-E542978 [TUS-64-I23](-)">
      <seq>ttgatgaatttgtggagaaagccaaagctcgtgctttaaaacgcattgttggagacccttcaaagaagggagttgaacaaggtccgcagattgatacagagcaatttgagaagatcctgaagtacataaaatctggtactgaaagcggggctactctcgagtctggaggggaaaaattgggttccaagggcttctatgtccaacctactgtcttctcaaatgtccaggataacatgctgattgccagagatgagatatttggaccagtgcagtccctcttgaaattcaaggatgttgaagaggtcatccgaagggcaaactcgtcacattatgggttggcagcgggtgtttttacccagaatatagatgcagccaacacaatatctcgagcccttagagtagggacagtgtgggttaactgctttaacatctttgatgctgccattccgtttggtggttataagatgagtggacatggaagagagaagggagtctacagcctaagtaactacttgcaagtcaaagctattgttacccctctgaagaatccagcatggctgtagttttcccccctgctttctggtactcctgagatgtcgtgcaacacggcaatcttgtcttttagaggtcacttgtatacagtgtagataagaccaaaacgctgtattgtgtgtgtgttattgtttgttactaacttcttatgatttgataacaatatgcaaacttgtttgtgtgagacctttcttgatttctgtagctctgatgcaaaataggatcttgtgtttgagttttgtgggaatgtaatgaattatatatagatgtaatgttataattcaaaaaaaaaaaaagaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0236E02-u8qcS/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0236E02.1" temp_strand="-" temp_description="C02HBa0236E02.1  AC215430.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0236E02 sequenced_by:kribb upload_account_name:korea">
        <position start="119083" stop="117178"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="118784" g_stop="118696" g_length="89"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="89" r_length="89" r_score="0.966"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="118695" i_stop="118416" i_length="280">
            <donor d_prob="0.997" d_score="0.96"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="118415" g_stop="118278" g_length="138"/>
          <reference_exon_boundary r_type="cDNA" r_start="90" r_stop="227" r_length="138" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="118277" i_stop="118169" i_length="109">
            <donor d_prob="0.961" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="118168" g_stop="118107" g_length="62"/>
          <reference_exon_boundary r_type="cDNA" r_start="228" r_stop="289" r_length="62" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="118106" i_stop="118028" i_length="79">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.920" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="118027" g_stop="117481" g_length="547"/>
          <reference_exon_boundary r_type="cDNA" r_start="290" r_stop="836" r_length="547" r_score="0.998"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="837" polyA_stop="852"/>
      <MATCH_line gen_id="C02HBa0236E02.1" gen_strand="-" ref_id="SGN-E542978" ref_strand="+">
        <total_alignment_score>0.995</total_alignment_score>
        <cumulative_length_of_scored_exons>836</cumulative_length_of_scored_exons>
        <coverage percentage="0.981" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0236E02.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E542978" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="118784" e_stop="118696"/>
          <exon e_start="118415" e_stop="118278"/>
          <exon e_start="118168" e_stop="118107"/>
          <exon e_start="118027" e_stop="117481"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATGATGAATTTGTGGAGAAAGCCAAAGCTCGTGCTTTAAAACGCATTGTTGGAGACCCTTTCAAGAAGGGAGTTGAACAAGGTCCGCAGGTACTGTTTTTTCGTGTATCGCTGTCCCCTCTGTCATGGATAATATATAAAAAGAGAATAGTTAAACAAATTCTTTGCCAACTTAAGGACAAGAAGGAATAATATATGTTCACCAATTTGGATGTAGCCAACTTTTCAGGCAATGGTACCTTTATTATTTCCTTTTCAGCATCTTACACAAACTTAAATCATGAATTTCCAGCAAAGAGAAGTAGTAATTACGGACTTCCATTTACATTTCTGAAGTAGTTGTAACATGAATGTTTTGTGTTATCAATAGATTGATACAGAGCAATTTGAGAAGATCCTGAAGTACATAAAATCTGGTACTGAAAGCGGGGCTACTCTCGAGTCTGGAGGGGAAAAATTGGGTTCCAAGGGCTTCTATGTCCAACCTACTGTCTTCTCAAATGTCCAGGTATAACTGCCATTGTCCATAGAATATATCCATACGTAAGGTGAAAAAGATGAGCATCGTACTGATGACATTTAATTGTTTTGTTTAAAATTATTTTTCAACTATTTAGGATAACATGCTGATTGCCAGAGATGAGATATTTGGACCAGTGCAGTCCCTCTTGAAATTCAAGTGAGATTACATTTCATTTGTATTGTATCTGTGCTTGTATTTTGTTTATTAACACTGAACCTGACCTTGAAACAAACAGGGATGTTGAAGAGGTCATCCGAAGGGCAAACTCGTCACATTATGGGTTGGCAGCGGGTGTTTTTACCCAGAATATAGATGCAGCCAACACAATATCTCGAGCCCTTAGAGTAGGGACAGTGTGGGTTAACTGCTTTAACATCTTTGATGCTGCCATTCCGTTTGGTGGTTATAAGATGAGTGGACATGGAAGAGAGAAGGGAGTCTACAGCCTAAGTAACTACTTGCAAGTCAAAGCTATTGTTACCCCTCTGAAGAATCCAGCATGGCTGTAGTTTTCCCCCCTGCTTTCTGGTACTCCTGAGATGTCGTGCAACACGGCAATCTTGTCTTTTAGAGGTCACTTGTATACAGTGTAGATAAGACCAAAACGCTGTATTGTGTGTGTGTTATTGTTTGTTACTAACTTCTTATGATTTGATAACAATATGCAAACTTGTTTGTGTGAGACCTTTCTTGATTTCTGTAGCTCTGATGCAAAATAGGATCTTGTGTTTGAGTTTTGTGGGAATGTAATGAATTATATATAGATGTAATGTTATAATTCT</genome_strand>
        <mrna_strand>TTGATGAATTTGTGGAGAAAGCCAAAGCTCGTGCTTTAAAACGCATTGTTGGAGACCCTTCAAAGAAGGGAGTTGAACAAGGTCCGCAG........................................................................................................................................................................................................................................................................................ATTGATACAGAGCAATTTGAGAAGATCCTGAAGTACATAAAATCTGGTACTGAAAGCGGGGCTACTCTCGAGTCTGGAGGGGAAAAATTGGGTTCCAAGGGCTTCTATGTCCAACCTACTGTCTTCTCAAATGTCCAG.............................................................................................................GATAACATGCTGATTGCCAGAGATGAGATATTTGGACCAGTGCAGTCCCTCTTGAAATTCAA...............................................................................GGATGTTGAAGAGGTCATCCGAAGGGCAAACTCGTCACATTATGGGTTGGCAGCGGGTGTTTTTACCCAGAATATAGATGCAGCCAACACAATATCTCGAGCCCTTAGAGTAGGGACAGTGTGGGTTAACTGCTTTAACATCTTTGATGCTGCCATTCCGTTTGGTGGTTATAAGATGAGTGGACATGGAAGAGAGAAGGGAGTCTACAGCCTAAGTAACTACTTGCAAGTCAAAGCTATTGTTACCCCTCTGAAGAATCCAGCATGGCTGTAGTTTTCCCCCCTGCTTTCTGGTACTCCTGAGATGTCGTGCAACACGGCAATCTTGTCTTTTAGAGGTCACTTGTATACAGTGTAGATAAGACCAAAACGCTGTATTGTGTGTGTGTTATTGTTTGTTACTAACTTCTTATGATTTGATAACAATATGCAAACTTGTTTGTGTGAGACCTTTCTTGATTTCTGTAGCTCTGATGCAAAATAGGATCTTGTGTTTGAGTTTTGTGGGAATGTAATGAATTATATATAGATGTAATGTTATAATTCA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0236E02-u8qcS/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E202862" ref_strand="+" ref_description="SGN-E202862 [cLEB-1-B3]">
      <seq>gcacgaggctgattgccagagatgagatatttggaccagtgcagtccctcttgaaattcaaggatgttgaagaggtcatccgaagggcaaactcgtcacattatgggttggcagcgggtgtttttacccagaatatagatgcagccaacacaatatctcgagcccttagagtagggacagtgtgggttaactgctttaacatctttgatgctgccattccgtttggtggttataagatgagtggacatggaagagagaagggagtctacagcctaagtaactacttgcaagtcaaagctattgttacccctctgaagaatccagcatggctgtagttttcccccctgctttctggtactcctgagatgtcgtgcaacacggcaatcttgtcttttagaggtcacttgtatacagtgtagataagaccaaaacgctgtattgtgtgtgtgttattgcttgttactaacttcttatgatttgataacaatatgcaaacttgtttgtgtgagacctttcttgatttctgtagctctgatgcaaaataggaacttgtgtttgagttttgtggggca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0236E02-u8qcS/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0236E02.1" temp_strand="-" temp_description="C02HBa0236E02.1  AC215430.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0236E02 sequenced_by:kribb upload_account_name:korea">
        <position start="118464" stop="117220"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="118167" g_stop="118107" g_length="61"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="61" r_length="61" r_score="0.918"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="118106" i_stop="118028" i_length="79">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.920" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="118027" g_stop="117517" g_length="511"/>
          <reference_exon_boundary r_type="cDNA" r_start="62" r_stop="572" r_length="511" r_score="0.990"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0236E02.1" gen_strand="-" ref_id="SGN-E202862" ref_strand="+">
        <total_alignment_score>0.983</total_alignment_score>
        <cumulative_length_of_scored_exons>572</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0236E02.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E202862" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="118167" e_stop="118107"/>
          <exon e_start="118027" e_stop="117517"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATAACATGCTGATTGCCAGAGATGAGATATTTGGACCAGTGCAGTCCCTCTTGAAATTCAAGTGAGATTACATTTCATTTGTATTGTATCTGTGCTTGTATTTTGTTTATTAACACTGAACCTGACCTTGAAACAAACAGGGATGTTGAAGAGGTCATCCGAAGGGCAAACTCGTCACATTATGGGTTGGCAGCGGGTGTTTTTACCCAGAATATAGATGCAGCCAACACAATATCTCGAGCCCTTAGAGTAGGGACAGTGTGGGTTAACTGCTTTAACATCTTTGATGCTGCCATTCCGTTTGGTGGTTATAAGATGAGTGGACATGGAAGAGAGAAGGGAGTCTACAGCCTAAGTAACTACTTGCAAGTCAAAGCTATTGTTACCCCTCTGAAGAATCCAGCATGGCTGTAGTTTTCCCCCCTGCTTTCTGGTACTCCTGAGATGTCGTGCAACACGGCAATCTTGTCTTTTAGAGGTCACTTGTATACAGTGTAGATAAGACCAAAACGCTGTATTGTGTGTGTGTTATTGTTTGTTACTAACTTCTTATGATTTGATAACAATATGCAAACTTGTTTGTGTGAGACCTTTCTTGATTTCTGTAGCTCTGATGCAAAATAGGATCTTGTGTTTGAGTTTTGTGGGAAT</genome_strand>
        <mrna_strand>GCACGAGGCTGATTGCCAGAGATGAGATATTTGGACCAGTGCAGTCCCTCTTGAAATTCAA...............................................................................GGATGTTGAAGAGGTCATCCGAAGGGCAAACTCGTCACATTATGGGTTGGCAGCGGGTGTTTTTACCCAGAATATAGATGCAGCCAACACAATATCTCGAGCCCTTAGAGTAGGGACAGTGTGGGTTAACTGCTTTAACATCTTTGATGCTGCCATTCCGTTTGGTGGTTATAAGATGAGTGGACATGGAAGAGAGAAGGGAGTCTACAGCCTAAGTAACTACTTGCAAGTCAAAGCTATTGTTACCCCTCTGAAGAATCCAGCATGGCTGTAGTTTTCCCCCCTGCTTTCTGGTACTCCTGAGATGTCGTGCAACACGGCAATCTTGTCTTTTAGAGGTCACTTGTATACAGTGTAGATAAGACCAAAACGCTGTATTGTGTGTGTGTTATTGCTTGTTACTAACTTCTTATGATTTGATAACAATATGCAAACTTGTTTGTGTGAGACCTTTCTTGATTTCTGTAGCTCTGATGCAAAATAGGAACTTGTGTTTGAGTTTTGTGGGGCA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0236E02-u8qcS/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E281199" ref_strand="+" ref_description="SGN-E281199 [cLEL-1-A19]">
      <seq>gccccacaaaactcaaacacaagatcctattttgcatcagagctacagaaatcaagaacggtctcacacaaacaagtttgcatattgttatcaaatcataagaagttagtaacaaacaataacacacacacaatacagcgttttggtcttatctacactgtatacaagtgacctctaaaag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0236E02-u8qcS/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0236E02.1" temp_strand="+" temp_description="C02HBa0236E02.1  AC215430.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0236E02 sequenced_by:kribb upload_account_name:korea">
        <position start="117220" stop="117998"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="117518" g_stop="117698" g_length="181"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="181" r_length="181" r_score="0.983"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0236E02.1" gen_strand="+" ref_id="SGN-E281199" ref_strand="+">
        <total_alignment_score>0.983</total_alignment_score>
        <cumulative_length_of_scored_exons>181</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0236E02.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E281199" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="117518" e_stop="117698"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTCCCACAAAACTCAAACACAAGATCCTATTTTGCATCAGAGCTACAGAAATCAAGAAAGGTCTCACACAAACAAGTTTGCATATTGTTATCAAATCATAAGAAGTTAGTAACAAACAATAACACACACACAATACAGCGTTTTGGTCTTATCTACACTGTATACAAGTGACCTCTAAAAG</genome_strand>
        <mrna_strand>GCCCCACAAAACTCAAACACAAGATCCTATTTTGCATCAGAGCTACAGAAATCAAGAACGGTCTCACACAAACAAGTTTGCATATTGTTATCAAATCATAAGAAGTTAGTAACAAACAATAACACACACACAATACAGCGTTTTGGTCTTATCTACACTGTATACAAGTGACCTCTAAAAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0236E02-u8qcS/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E733861" ref_strand="+" ref_description="SGN-E733861 [LB11AE12]">
      <seq>cgatagtgcagtccctcttgaaattcaaggatgttgaagaggtcatccgaagggcaaactcgtcacattatgggttggcagcgggtgtttttacccagaatatagatgcagccaacacaatatctcgagcccttagagtagggacagtgtgggttaactgctttaacatctttgatgctgccattccgtttggtggttataagatgagtggacatggaagagagaagggagtctacagcctaagtaactacttgcaagtcaaagctattgttacccctctgaagaatccagcatggctgtagttttcccccctgctttctggtactcctgagatgtcgtgcaacacggcaatcttgtcttttagaggtcacttgtatacagtgtagataagaccaaaacgctgtattgtgtgtgtgttattgtttgttactaacttcttatgatttgataacaatatgcaaacttgtttgtgtgaaaaaaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0236E02-u8qcS/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0236E02.1" temp_strand="-" temp_description="C02HBa0236E02.1  AC215430.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0236E02 sequenced_by:kribb upload_account_name:korea">
        <position start="118430" stop="117279"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="118135" g_stop="118107" g_length="29"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="28" r_length="28" r_score="0.897"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="118106" i_stop="118028" i_length="79">
            <donor d_prob="0.995" d_score="0.00"/>
            <acceptor a_prob="0.920" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="118027" g_stop="117585" g_length="443"/>
          <reference_exon_boundary r_type="cDNA" r_start="29" r_stop="471" r_length="443" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="475" polyA_stop="498"/>
      <MATCH_line gen_id="C02HBa0236E02.1" gen_strand="-" ref_id="SGN-E733861" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>472</cumulative_length_of_scored_exons>
        <coverage percentage="0.948" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0236E02.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E733861" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="118135" e_stop="118107"/>
          <exon e_start="118027" e_stop="117585"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGACCAGTGCAGTCCCTCTTGAAATTCAAGTGAGATTACATTTCATTTGTATTGTATCTGTGCTTGTATTTTGTTTATTAACACTGAACCTGACCTTGAAACAAACAGGGATGTTGAAGAGGTCATCCGAAGGGCAAACTCGTCACATTATGGGTTGGCAGCGGGTGTTTTTACCCAGAATATAGATGCAGCCAACACAATATCTCGAGCCCTTAGAGTAGGGACAGTGTGGGTTAACTGCTTTAACATCTTTGATGCTGCCATTCCGTTTGGTGGTTATAAGATGAGTGGACATGGAAGAGAGAAGGGAGTCTACAGCCTAAGTAACTACTTGCAAGTCAAAGCTATTGTTACCCCTCTGAAGAATCCAGCATGGCTGTAGTTTTCCCCCCTGCTTTCTGGTACTCCTGAGATGTCGTGCAACACGGCAATCTTGTCTTTTAGAGGTCACTTGTATACAGTGTAGATAAGACCAAAACGCTGTATTGTGTGTGTGTTATTGTTTGTTACTAACTTCTTATGATTTGATAACAATATGCAAACTTGTTTGT</genome_strand>
        <mrna_strand>CGAT-AGTGCAGTCCCTCTTGAAATTCAA...............................................................................GGATGTTGAAGAGGTCATCCGAAGGGCAAACTCGTCACATTATGGGTTGGCAGCGGGTGTTTTTACCCAGAATATAGATGCAGCCAACACAATATCTCGAGCCCTTAGAGTAGGGACAGTGTGGGTTAACTGCTTTAACATCTTTGATGCTGCCATTCCGTTTGGTGGTTATAAGATGAGTGGACATGGAAGAGAGAAGGGAGTCTACAGCCTAAGTAACTACTTGCAAGTCAAAGCTATTGTTACCCCTCTGAAGAATCCAGCATGGCTGTAGTTTTCCCCCCTGCTTTCTGGTACTCCTGAGATGTCGTGCAACACGGCAATCTTGTCTTTTAGAGGTCACTTGTATACAGTGTAGATAAGACCAAAACGCTGTATTGTGTGTGTGTTATTGTTTGTTACTAACTTCTTATGATTTGATAACAATATGCAAACTTGTTTGT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0236E02-u8qcS/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E573825" ref_strand="-" ref_description="SGN-E573825 [33197]">
      <seq>aagagtatatgatgaatttgtggagaaacccaaggtttcgtgccttttaanacgtatcgttggagacccttttcaagaagggagtgaacaagtcctcagattgatacagagcaatttgagaagatccttaagttacataaaatctggtacctgaaagggggctacttactcttgagtctggaggggaaaaattgggttccaagggattctatgtccaacctactgtcttctcaaatgtccaggataacatgctgattgccagagatgagatatttggaccagtgcagtccctcttgaaattcaaggatgttgaagaggtcatttgaagggcaaactcgtcacattatgggttggcggcgggtgtttttacccagaatatagatgcagccaacacaatatctcgagcccttagagtagggacagtgtaggttaactgctttaatatctttgatgctgccattccttttggtggttataagatgtgtggacatggaagagaaaagggagtctacagcctaactacttgcaagtcaaagctattgttactcctctgaagaatccaacatggctgtagttttccctcctgctttctgatactcctgagatgtcatgcaacacggcaatcttgttttttgaggtcacttgtatacagtgtagataagaccaaaacgctatattgtgtttgtgttattgtttgttactaacttcttatgatttgataacaatatgcaacccttgc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0236E02-u8qcS/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0236E02.1" temp_strand="-" temp_description="C02HBa0236E02.1  AC215430.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0236E02 sequenced_by:kribb upload_account_name:korea">
        <position start="119092" stop="117290"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="118792" g_stop="118696" g_length="97"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="99" r_length="99" r_score="0.825"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="118695" i_stop="118416" i_length="280">
            <donor d_prob="0.997" d_score="0.86"/>
            <acceptor a_prob="0.996" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="118415" g_stop="118278" g_length="138"/>
          <reference_exon_boundary r_type="cDNA" r_start="100" r_stop="242" r_length="143" r_score="0.891"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="118277" i_stop="118169" i_length="109">
            <donor d_prob="0.961" d_score="0.98"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="118168" g_stop="118107" g_length="62"/>
          <reference_exon_boundary r_type="cDNA" r_start="243" r_stop="304" r_length="62" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="118106" i_stop="118028" i_length="79">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.920" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="118027" g_stop="117589" g_length="439"/>
          <reference_exon_boundary r_type="cDNA" r_start="305" r_stop="739" r_length="435" r_score="0.943"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0236E02.1" gen_strand="-" ref_id="SGN-E573825" ref_strand="-">
        <total_alignment_score>0.923</total_alignment_score>
        <cumulative_length_of_scored_exons>736</cumulative_length_of_scored_exons>
        <coverage percentage="0.996" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0236E02.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E573825" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="118792" e_stop="118696"/>
          <exon e_start="118415" e_stop="118278"/>
          <exon e_start="118168" e_stop="118107"/>
          <exon e_start="118027" e_stop="117589"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAGAGTATATGATGAATTTGTGGAGAAAGCCAAAG-CTCGTG-C-TTTAAAACGCATTGTTGGAGACCC-TTTCAAGAAGGGAGTTGAACAAGGTCCGCAGGTACTGTTTTTTCGTGTATCGCTGTCCCCTCTGTCATGGATAATATATAAAAAGAGAATAGTTAAACAAATTCTTTGCCAACTTAAGGACAAGAAGGAATAATATATGTTCACCAATTTGGATGTAGCCAACTTTTCAGGCAATGGTACCTTTATTATTTCCTTTTCAGCATCTTACACAAACTTAAATCATGAATTTCCAGCAAAGAGAAGTAGTAATTACGGACTTCCATTTACATTTCTGAAGTAGTTGTAACATGAATGTTTTGTGTTATCAATAGATTGATACAGAGCAATTTGAGAAGATCCTGAAG-TACATAAAATCTGGTA-CTGAAAGCGGG--GC-TACTCTCGAGTCTGGAGGGGAAAAATTGGGTTCCAAGGGCTTCTATGTCCAACCTACTGTCTTCTCAAATGTCCAGGTATAACTGCCATTGTCCATAGAATATATCCATACGTAAGGTGAAAAAGATGAGCATCGTACTGATGACATTTAATTGTTTTGTTTAAAATTATTTTTCAACTATTTAGGATAACATGCTGATTGCCAGAGATGAGATATTTGGACCAGTGCAGTCCCTCTTGAAATTCAAGTGAGATTACATTTCATTTGTATTGTATCTGTGCTTGTATTTTGTTTATTAACACTGAACCTGACCTTGAAACAAACAGGGATGTTGAAGAGGTCATCCGAAGGGCAAACTCGTCACATTATGGGTTGGCAGCGGGTGTTTTTACCCAGAATATAGATGCAGCCAACACAATATCTCGAGCCCTTAGAGTAGGGACAGTGTGGGTTAACTGCTTTAACATCTTTGATGCTGCCATTCCGTTTGGTGGTTATAAGATGAGTGGACATGGAAGAGAGAAGGGAGTCTACAGCCTAAGTAACTACTTGCAAGTCAAAGCTATTGTTACCCCTCTGAAGAATCCAGCATGGCTGTAGTTTTCCCCCCTGCTTTCTGGTACTCCTGAGATGTCGTGCAACACGGCAATCTTGTCTTTTAGAGGTCACTTGTATACAGTGTAGATAAGACCAAAACGCTGTATTGTGTGTGTGTTATTGTTTGTTACTAACTTCTTATGATTTGATAACAATATGCAA-ACTTGT</genome_strand>
        <mrna_strand>AAGAGTATATGATGAATTTGTGGAGAAACCCAAGGTTTCGTGCCTTTTAANACGTATCGTTGGAGACCCTTTTCAAGAAGGGAG-TGAACAA-GTCCTCAG........................................................................................................................................................................................................................................................................................ATTGATACAGAGCAATTTGAGAAGATCCTTAAGTTACATAAAATCTGGTACCTGAAAGGGGGCTACTTACTCTTGAGTCTGGAGGGGAAAAATTGGGTTCCAAGGGATTCTATGTCCAACCTACTGTCTTCTCAAATGTCCAG.............................................................................................................GATAACATGCTGATTGCCAGAGATGAGATATTTGGACCAGTGCAGTCCCTCTTGAAATTCAA...............................................................................GGATGTTGAAGAGGTCATTTGAAGGGCAAACTCGTCACATTATGGGTTGGCGGCGGGTGTTTTTACCCAGAATATAGATGCAGCCAACACAATATCTCGAGCCCTTAGAGTAGGGACAGTGTAGGTTAACTGCTTTAATATCTTTGATGCTGCCATTCCTTTTGGTGGTTATAAGATGTGTGGACATGGAAGAGAAAAGGGAGTCTACAGCC----TAACTACTTGCAAGTCAAAGCTATTGTTACTCCTCTGAAGAATCCAACATGGCTGTAGTTTTCCCTCCTGCTTTCTGATACTCCTGAGATGTCATGCAACACGGCAATCTTGT-TTTTTGAGGTCACTTGTATACAGTGTAGATAAGACCAAAACGCTATATTGTGTTTGTGTTATTGTTTGTTACTAACTTCTTATGATTTGATAACAATATGCAACCCTTGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0236E02-u8qcS/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E256282" ref_strand="+" ref_description="SGN-E256282 [cLEG-37-J12]">
      <seq>gatgttgaaaaggtcatccgaagggcaaactcgtcacattatgggttggcagcgggtgtttttacccacaatatagatgcagccaacacaatatctcgagcccttagagtagggacagtgtgggttaactgctttaacatctttgatgctgccattccgtttggtggttataagatgagtggacatggaagagagaagggagtctacagcctaagtaactacttgcaagtcaaagctattgttacccctctgaataatccagcatggctgtagttttcccccctgctttctggtactcctgagatgtcgtgcaacacggcaatcttgtcttttagaggtcacttgtctacagtgtagataagaccaaaacgctgtattgcgtgtgtgttattgtttgttactaacttcttatgattt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0236E02-u8qcS/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0236E02.1" temp_strand="-" temp_description="C02HBa0236E02.1  AC215430.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0236E02 sequenced_by:kribb upload_account_name:korea">
        <position start="118326" stop="117310"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="118026" g_stop="117610" g_length="417"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="417" r_length="417" r_score="0.988"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0236E02.1" gen_strand="-" ref_id="SGN-E256282" ref_strand="+">
        <total_alignment_score>0.988</total_alignment_score>
        <cumulative_length_of_scored_exons>417</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0236E02.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E256282" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="118026" e_stop="117610"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GATGTTGAAGAGGTCATCCGAAGGGCAAACTCGTCACATTATGGGTTGGCAGCGGGTGTTTTTACCCAGAATATAGATGCAGCCAACACAATATCTCGAGCCCTTAGAGTAGGGACAGTGTGGGTTAACTGCTTTAACATCTTTGATGCTGCCATTCCGTTTGGTGGTTATAAGATGAGTGGACATGGAAGAGAGAAGGGAGTCTACAGCCTAAGTAACTACTTGCAAGTCAAAGCTATTGTTACCCCTCTGAAGAATCCAGCATGGCTGTAGTTTTCCCCCCTGCTTTCTGGTACTCCTGAGATGTCGTGCAACACGGCAATCTTGTCTTTTAGAGGTCACTTGTATACAGTGTAGATAAGACCAAAACGCTGTATTGTGTGTGTGTTATTGTTTGTTACTAACTTCTTATGATTT</genome_strand>
        <mrna_strand>GATGTTGAAAAGGTCATCCGAAGGGCAAACTCGTCACATTATGGGTTGGCAGCGGGTGTTTTTACCCACAATATAGATGCAGCCAACACAATATCTCGAGCCCTTAGAGTAGGGACAGTGTGGGTTAACTGCTTTAACATCTTTGATGCTGCCATTCCGTTTGGTGGTTATAAGATGAGTGGACATGGAAGAGAGAAGGGAGTCTACAGCCTAAGTAACTACTTGCAAGTCAAAGCTATTGTTACCCCTCTGAATAATCCAGCATGGCTGTAGTTTTCCCCCCTGCTTTCTGGTACTCCTGAGATGTCGTGCAACACGGCAATCTTGTCTTTTAGAGGTCACTTGTCTACAGTGTAGATAAGACCAAAACGCTGTATTGCGTGTGTGTTATTGTTTGTTACTAACTTCTTATGATTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0236E02-u8qcS/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E264163" ref_strand="+" ref_description="SGN-E264163 [cLEG-64-P1]">
      <seq>aaatctggtactgaaagcggggctactctcgagtctggaggggaaaaattgggttccaagggcttctatgtccaacctactgtcttctcaaatgtccaggataacatgctgattgccagagatgagatatttggaccagtgcagtccctcttgaaattcaaggatgttgaagaggtcatccgaagggcaaactcgtcacattatgggttggcagcgggtgtttttacccagaatatagatgcagccaacacaatatctcgagcccttagagtagggacagtgtgggttaactgctttaacatctttgatgctgccattccgtttggtggttataagatgagtggacatggaagagagaagggagtctacagcctaagtaactacttgcaagtcaaagctattgttacccctctgaagaatccagcatggctgtagttttcccccctgctttctggtactcctgagatgtcgtgcaacacggcaatcttgtctttt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0236E02-u8qcS/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0236E02.1" temp_strand="-" temp_description="C02HBa0236E02.1  AC215430.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0236E02 sequenced_by:kribb upload_account_name:korea">
        <position start="118676" stop="117394"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="118376" g_stop="118278" g_length="99"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="99" r_length="99" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="118277" i_stop="118169" i_length="109">
            <donor d_prob="0.961" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="118168" g_stop="118107" g_length="62"/>
          <reference_exon_boundary r_type="cDNA" r_start="100" r_stop="161" r_length="62" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="118106" i_stop="118028" i_length="79">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.920" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="118027" g_stop="117694" g_length="334"/>
          <reference_exon_boundary r_type="cDNA" r_start="162" r_stop="495" r_length="334" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0236E02.1" gen_strand="-" ref_id="SGN-E264163" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>495</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0236E02.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E264163" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="118376" e_stop="118278"/>
          <exon e_start="118168" e_stop="118107"/>
          <exon e_start="118027" e_stop="117694"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAATCTGGTACTGAAAGCGGGGCTACTCTCGAGTCTGGAGGGGAAAAATTGGGTTCCAAGGGCTTCTATGTCCAACCTACTGTCTTCTCAAATGTCCAGGTATAACTGCCATTGTCCATAGAATATATCCATACGTAAGGTGAAAAAGATGAGCATCGTACTGATGACATTTAATTGTTTTGTTTAAAATTATTTTTCAACTATTTAGGATAACATGCTGATTGCCAGAGATGAGATATTTGGACCAGTGCAGTCCCTCTTGAAATTCAAGTGAGATTACATTTCATTTGTATTGTATCTGTGCTTGTATTTTGTTTATTAACACTGAACCTGACCTTGAAACAAACAGGGATGTTGAAGAGGTCATCCGAAGGGCAAACTCGTCACATTATGGGTTGGCAGCGGGTGTTTTTACCCAGAATATAGATGCAGCCAACACAATATCTCGAGCCCTTAGAGTAGGGACAGTGTGGGTTAACTGCTTTAACATCTTTGATGCTGCCATTCCGTTTGGTGGTTATAAGATGAGTGGACATGGAAGAGAGAAGGGAGTCTACAGCCTAAGTAACTACTTGCAAGTCAAAGCTATTGTTACCCCTCTGAAGAATCCAGCATGGCTGTAGTTTTCCCCCCTGCTTTCTGGTACTCCTGAGATGTCGTGCAACACGGCAATCTTGTCTTTT</genome_strand>
        <mrna_strand>AAATCTGGTACTGAAAGCGGGGCTACTCTCGAGTCTGGAGGGGAAAAATTGGGTTCCAAGGGCTTCTATGTCCAACCTACTGTCTTCTCAAATGTCCAG.............................................................................................................GATAACATGCTGATTGCCAGAGATGAGATATTTGGACCAGTGCAGTCCCTCTTGAAATTCAA...............................................................................GGATGTTGAAGAGGTCATCCGAAGGGCAAACTCGTCACATTATGGGTTGGCAGCGGGTGTTTTTACCCAGAATATAGATGCAGCCAACACAATATCTCGAGCCCTTAGAGTAGGGACAGTGTGGGTTAACTGCTTTAACATCTTTGATGCTGCCATTCCGTTTGGTGGTTATAAGATGAGTGGACATGGAAGAGAGAAGGGAGTCTACAGCCTAAGTAACTACTTGCAAGTCAAAGCTATTGTTACCCCTCTGAAGAATCCAGCATGGCTGTAGTTTTCCCCCCTGCTTTCTGGTACTCCTGAGATGTCGTGCAACACGGCAATCTTGTCTTTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0236E02-u8qcS/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E281400" ref_strand="-" ref_description="SGN-E281400 [cLEL-1-A19](-)">
      <seq>gcacgaggctgattgccagagatgagatatttggaccagtgcagtccctcttgaaattcaaggatgttgaagaggtcatccgaagggcacactcgtcacattatgggttggcagcgggtgtttttacccagaatatagatgcagccaacacaatatctcgagcccttagagtagggacagtgtgggttaactgctttaacatctttgatgctgccattccgtttggtggttataagatgagtggacatggaagagagaagggagtctacagcctaagtaactacttgcaagtcaaagctattgttacccctctgaagaatccagcatggctgtagttttcccccctgctatctggtactcctg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0236E02-u8qcS/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0236E02.1" temp_strand="-" temp_description="C02HBa0236E02.1  AC215430.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0236E02 sequenced_by:kribb upload_account_name:korea">
        <position start="118464" stop="117426"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="118167" g_stop="118107" g_length="61"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="61" r_length="61" r_score="0.918"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="118106" i_stop="118028" i_length="79">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.920" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="118027" g_stop="117726" g_length="302"/>
          <reference_exon_boundary r_type="cDNA" r_start="62" r_stop="363" r_length="302" r_score="0.993"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0236E02.1" gen_strand="-" ref_id="SGN-E281400" ref_strand="-">
        <total_alignment_score>0.981</total_alignment_score>
        <cumulative_length_of_scored_exons>363</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0236E02.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E281400" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="118167" e_stop="118107"/>
          <exon e_start="118027" e_stop="117726"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATAACATGCTGATTGCCAGAGATGAGATATTTGGACCAGTGCAGTCCCTCTTGAAATTCAAGTGAGATTACATTTCATTTGTATTGTATCTGTGCTTGTATTTTGTTTATTAACACTGAACCTGACCTTGAAACAAACAGGGATGTTGAAGAGGTCATCCGAAGGGCAAACTCGTCACATTATGGGTTGGCAGCGGGTGTTTTTACCCAGAATATAGATGCAGCCAACACAATATCTCGAGCCCTTAGAGTAGGGACAGTGTGGGTTAACTGCTTTAACATCTTTGATGCTGCCATTCCGTTTGGTGGTTATAAGATGAGTGGACATGGAAGAGAGAAGGGAGTCTACAGCCTAAGTAACTACTTGCAAGTCAAAGCTATTGTTACCCCTCTGAAGAATCCAGCATGGCTGTAGTTTTCCCCCCTGCTTTCTGGTACTCCTG</genome_strand>
        <mrna_strand>GCACGAGGCTGATTGCCAGAGATGAGATATTTGGACCAGTGCAGTCCCTCTTGAAATTCAA...............................................................................GGATGTTGAAGAGGTCATCCGAAGGGCACACTCGTCACATTATGGGTTGGCAGCGGGTGTTTTTACCCAGAATATAGATGCAGCCAACACAATATCTCGAGCCCTTAGAGTAGGGACAGTGTGGGTTAACTGCTTTAACATCTTTGATGCTGCCATTCCGTTTGGTGGTTATAAGATGAGTGGACATGGAAGAGAGAAGGGAGTCTACAGCCTAAGTAACTACTTGCAAGTCAAAGCTATTGTTACCCCTCTGAAGAATCCAGCATGGCTGTAGTTTTCCCCCCTGCTATCTGGTACTCCTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0236E02-u8qcS/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E434262" ref_strand="+" ref_description="SGN-E434262 [STM-59-N11]">
      <seq>tccactcttggaaaattgcaacctctgatgcttgctccggaatggaataaatttcaagtatctgcagggacaatcctgctgtgctggatctcggacattcgtacatgaaagagtatatgatgaatttgtggagaaagccaaggttcgtgcgttaaaacgtatcgttggagaccctttcaagaagggagttgaacaaggtcctcagattgatacagagcaatttgagaagatccttaagtacataaaatctggtactgaaagggggctactcttgagtctggaggggaaaaattgggttccaagggattctatgtccaacctactgtcttctcaaatgtccaggataacatgctgattgccagagatgagatatttggaccagtgcagtccctcttgaaattctagtgagattacatttcatttgtaatgtagctgtgcttgtattttgtttattaacactgaatctgacctcgaaacaaacagggatgttgaagaggtcattcgaagggcaaactcgtcacattatgggttggcggcgggtgtttttacccagaatatagatgcagccaacacaatatctcgagcccttagagtagggacagtgtgggtttactgctttaatatctttgatgctgccattccttttggtggttataaggtgagtggacatggaagagaaaagggagtctacagcctaagtaactacttgcaagtcaaagctattgttactcctctgaagatccaacatggctgtagttttccctcctgctttc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0236E02-u8qcS/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0236E02.1" temp_strand="-" temp_description="C02HBa0236E02.1  AC215430.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0236E02 sequenced_by:kribb upload_account_name:korea">
        <position start="119200" stop="117437"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="118900" g_stop="118696" g_length="205"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="205" r_length="205" r_score="0.961"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="118695" i_stop="118416" i_length="280">
            <donor d_prob="0.997" d_score="0.94"/>
            <acceptor a_prob="0.996" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="118415" g_stop="118278" g_length="138"/>
          <reference_exon_boundary r_type="cDNA" r_start="206" r_stop="342" r_length="137" r_score="0.971"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="118277" i_stop="118169" i_length="109">
            <donor d_prob="0.961" d_score="0.98"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="118168" g_stop="117737" g_length="432"/>
          <reference_exon_boundary r_type="cDNA" r_start="343" r_stop="773" r_length="431" r_score="0.963"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0236E02.1" gen_strand="-" ref_id="SGN-E434262" ref_strand="+">
        <total_alignment_score>0.964</total_alignment_score>
        <cumulative_length_of_scored_exons>775</cumulative_length_of_scored_exons>
        <coverage percentage="1.003" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0236E02.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E434262" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="118900" e_stop="118696"/>
          <exon e_start="118415" e_stop="118278"/>
          <exon e_start="118168" e_stop="117737"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCCACTCTTGGAAAATTGCAACCTCTGATGCTTGCTCCAGAATGGAATAAATTTCAAGTATCTGCAGGGACAATGCTGCTGTGCTGGATCTCGGACATTCGTACATGAAAGAGTATATGATGAATTTGTGGAGAAAGCCAAAGCTCGTGCTTTAAAACGCATTGTTGGAGACCCTTTCAAGAAGGGAGTTGAACAAGGTCCGCAGGTACTGTTTTTTCGTGTATCGCTGTCCCCTCTGTCATGGATAATATATAAAAAGAGAATAGTTAAACAAATTCTTTGCCAACTTAAGGACAAGAAGGAATAATATATGTTCACCAATTTGGATGTAGCCAACTTTTCAGGCAATGGTACCTTTATTATTTCCTTTTCAGCATCTTACACAAACTTAAATCATGAATTTCCAGCAAAGAGAAGTAGTAATTACGGACTTCCATTTACATTTCTGAAGTAGTTGTAACATGAATGTTTTGTGTTATCAATAGATTGATACAGAGCAATTTGAGAAGATCCTGAAGTACATAAAATCTGGTACTGAAAGCGGGGCTACTCTCGAGTCTGGAGGGGAAAAATTGGGTTCCAAGGGCTTCTATGTCCAACCTACTGTCTTCTCAAATGTCCAGGTATAACTGCCATTGTCCATAGAATATATCCATACGTAAGGTGAAAAAGATGAGCATCGTACTGATGACATTTAATTGTTTTGTTTAAAATTATTTTTCAACTATTTAGGATAACATGCTGATTGCCAGAGATGAGATATTTGGACCAGTGCAGTCCCTCTTGAAATTCAAGTGAGATTACATTTCATTTGTATTGTATCTGTGCTTGTATTTTGTTTATTAACACTGAACCTGACCTTGAAACAAACAGGGATGTTGAAGAGGTCATCCGAAGGGCAAACTCGTCACATTATGGGTTGGCAGCGGGTGTTTTTACCCAGAATATAGATGCAGCCAACACAATATCTCGAGCCCTTAGAGTAGGGACAGTGTGGGTTAACTGCTTTAACATCTTTGATGCTGCCATTCCGTTTGGTGGTTATAAGATGAGTGGACATGGAAGAGAGAAGGGAGTCTACAGCCTAAGTAACTACTTGCAAGTCAAAGCTATTGTTACCCCTCTGAAGAATCCAGCATGGCTGTAGTTTTCCCCCCTGCTTTC</genome_strand>
        <mrna_strand>TCCACTCTTGGAAAATTGCAACCTCTGATGCTTGCTCCGGAATGGAATAAATTTCAAGTATCTGCAGGGACAATCCTGCTGTGCTGGATCTCGGACATTCGTACATGAAAGAGTATATGATGAATTTGTGGAGAAAGCCAAGGTTCGTGCGTTAAAACGTATCGTTGGAGACCCTTTCAAGAAGGGAGTTGAACAAGGTCCTCAG........................................................................................................................................................................................................................................................................................ATTGATACAGAGCAATTTGAGAAGATCCTTAAGTACATAAAATCTGGTACTGAAAG-GGGGCTACTCTTGAGTCTGGAGGGGAAAAATTGGGTTCCAAGGGATTCTATGTCCAACCTACTGTCTTCTCAAATGTCCAG.............................................................................................................GATAACATGCTGATTGCCAGAGATGAGATATTTGGACCAGTGCAGTCCCTCTTGAAATTCTAGTGAGATTACATTTCATTTGTAATGTAGCTGTGCTTGTATTTTGTTTATTAACACTGAATCTGACCTCGAAACAAACAGGGATGTTGAAGAGGTCATTCGAAGGGCAAACTCGTCACATTATGGGTTGGCGGCGGGTGTTTTTACCCAGAATATAGATGCAGCCAACACAATATCTCGAGCCCTTAGAGTAGGGACAGTGTGGGTTTACTGCTTTAATATCTTTGATGCTGCCATTCCTTTTGGTGGTTATAAGGTGAGTGGACATGGAAGAGAAAAGGGAGTCTACAGCCTAAGTAACTACTTGCAAGTCAAAGCTATTGTTACTCCTCTGAAG-ATCCAACATGGCTGTAGTTTTCCCTCCTGCTTTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0236E02-u8qcS/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E271494" ref_strand="+" ref_description="SGN-E271494 [cLEM-5-P20]">
      <seq>agaaagccaaagctcgtgctttaaaacgcattgttggagacccttgtaagaagggagttgaacaagattgatacagagcaatttgagaagatcctgaagtacataaaatctggtactgaaagcggggctactctcgagtctggaggggaaaaattgggttccaagggcttctatgtccaacctactgtcttctcaaatgtccaggataacatgctgattgccagagatgagatatttggaccagtgcagtccctcttgaaattcaaggatgttgaagaggtcatccgaagggcaaactcgtcacattatgggttggcagcgggtgtttttacccagaatatagatgcagccaacacaatatctcgagcccttagagtagggacagtgtgggttaactgctttaacatctttgatgctgccattccgtttggtggttataagatgagtggacatggaagagagaagggagtctacagcctaagtaactacttgcaagtcaaagctattgttacccctctg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0236E02-u8qcS/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0236E02.1" temp_strand="-" temp_description="C02HBa0236E02.1  AC215430.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0236E02 sequenced_by:kribb upload_account_name:korea">
        <position start="119069" stop="117475"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="118769" g_stop="118704" g_length="66"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="66" r_length="66" r_score="0.970"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="118703" i_stop="118416" i_length="288">
            <donor d_prob="0.597" d_score="0.96"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="118415" g_stop="118278" g_length="138"/>
          <reference_exon_boundary r_type="cDNA" r_start="67" r_stop="204" r_length="138" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="118277" i_stop="118169" i_length="109">
            <donor d_prob="0.961" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="118168" g_stop="118107" g_length="62"/>
          <reference_exon_boundary r_type="cDNA" r_start="205" r_stop="266" r_length="62" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="118106" i_stop="118028" i_length="79">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.920" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="118027" g_stop="117775" g_length="253"/>
          <reference_exon_boundary r_type="cDNA" r_start="267" r_stop="519" r_length="253" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0236E02.1" gen_strand="-" ref_id="SGN-E271494" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>519</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0236E02.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E271494" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="118769" e_stop="118704"/>
          <exon e_start="118415" e_stop="118278"/>
          <exon e_start="118168" e_stop="118107"/>
          <exon e_start="118027" e_stop="117775"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGAAAGCCAAAGCTCGTGCTTTAAAACGCATTGTTGGAGACCCTTTCAAGAAGGGAGTTGAACAAGGTCCGCAGGTACTGTTTTTTCGTGTATCGCTGTCCCCTCTGTCATGGATAATATATAAAAAGAGAATAGTTAAACAAATTCTTTGCCAACTTAAGGACAAGAAGGAATAATATATGTTCACCAATTTGGATGTAGCCAACTTTTCAGGCAATGGTACCTTTATTATTTCCTTTTCAGCATCTTACACAAACTTAAATCATGAATTTCCAGCAAAGAGAAGTAGTAATTACGGACTTCCATTTACATTTCTGAAGTAGTTGTAACATGAATGTTTTGTGTTATCAATAGATTGATACAGAGCAATTTGAGAAGATCCTGAAGTACATAAAATCTGGTACTGAAAGCGGGGCTACTCTCGAGTCTGGAGGGGAAAAATTGGGTTCCAAGGGCTTCTATGTCCAACCTACTGTCTTCTCAAATGTCCAGGTATAACTGCCATTGTCCATAGAATATATCCATACGTAAGGTGAAAAAGATGAGCATCGTACTGATGACATTTAATTGTTTTGTTTAAAATTATTTTTCAACTATTTAGGATAACATGCTGATTGCCAGAGATGAGATATTTGGACCAGTGCAGTCCCTCTTGAAATTCAAGTGAGATTACATTTCATTTGTATTGTATCTGTGCTTGTATTTTGTTTATTAACACTGAACCTGACCTTGAAACAAACAGGGATGTTGAAGAGGTCATCCGAAGGGCAAACTCGTCACATTATGGGTTGGCAGCGGGTGTTTTTACCCAGAATATAGATGCAGCCAACACAATATCTCGAGCCCTTAGAGTAGGGACAGTGTGGGTTAACTGCTTTAACATCTTTGATGCTGCCATTCCGTTTGGTGGTTATAAGATGAGTGGACATGGAAGAGAGAAGGGAGTCTACAGCCTAAGTAACTACTTGCAAGTCAAAGCTATTGTTACCCCTCTG</genome_strand>
        <mrna_strand>AGAAAGCCAAAGCTCGTGCTTTAAAACGCATTGTTGGAGACCCTTGTAAGAAGGGAGTTGAACAAG................................................................................................................................................................................................................................................................................................ATTGATACAGAGCAATTTGAGAAGATCCTGAAGTACATAAAATCTGGTACTGAAAGCGGGGCTACTCTCGAGTCTGGAGGGGAAAAATTGGGTTCCAAGGGCTTCTATGTCCAACCTACTGTCTTCTCAAATGTCCAG.............................................................................................................GATAACATGCTGATTGCCAGAGATGAGATATTTGGACCAGTGCAGTCCCTCTTGAAATTCAA...............................................................................GGATGTTGAAGAGGTCATCCGAAGGGCAAACTCGTCACATTATGGGTTGGCAGCGGGTGTTTTTACCCAGAATATAGATGCAGCCAACACAATATCTCGAGCCCTTAGAGTAGGGACAGTGTGGGTTAACTGCTTTAACATCTTTGATGCTGCCATTCCGTTTGGTGGTTATAAGATGAGTGGACATGGAAGAGAGAAGGGAGTCTACAGCCTAAGTAACTACTTGCAAGTCAAAGCTATTGTTACCCCTCTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0236E02-u8qcS/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E245692" ref_strand="+" ref_description="SGN-E245692 [cLEF-48-M15]">
      <seq>gccaaagctcgtgctttaaaacgcattgttggagaccctttcaagaagggagttgaacaagattgatacagagcaatttgagaagatcctgaagtacataaaatctggtactgaaagcggggctactctcgagtctggaggggaaaaattgggttccaagggcttctatgtccaacctactgtcttctcaaatgtccaggataacatgctgattgccagagatgagatatttggaccagtgcagtccctcttgaaattcaaggatgttgaagaggtcatccgaaaggcaaactcgtcacattatgggttggcagcgggtgtttttacccagaatatagatgcagccaacacaatatctcgagcccttagagtagggacagtgtgggttaactgctttaacatctttgatgctgccattccgtttggtggttataagatgagtggacatggaagagagaagggagtctacagcctaaataactacttgcaagtc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0236E02-u8qcS/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0236E02.1" temp_strand="-" temp_description="C02HBa0236E02.1  AC215430.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0236E02 sequenced_by:kribb upload_account_name:korea">
        <position start="119064" stop="117496"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="118764" g_stop="118704" g_length="61"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="61" r_length="61" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="118703" i_stop="118416" i_length="288">
            <donor d_prob="0.597" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="118415" g_stop="118278" g_length="138"/>
          <reference_exon_boundary r_type="cDNA" r_start="62" r_stop="199" r_length="138" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="118277" i_stop="118169" i_length="109">
            <donor d_prob="0.961" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="118168" g_stop="118107" g_length="62"/>
          <reference_exon_boundary r_type="cDNA" r_start="200" r_stop="261" r_length="62" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="118106" i_stop="118028" i_length="79">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.920" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="118027" g_stop="117796" g_length="232"/>
          <reference_exon_boundary r_type="cDNA" r_start="262" r_stop="493" r_length="232" r_score="0.991"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0236E02.1" gen_strand="-" ref_id="SGN-E245692" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>493</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0236E02.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E245692" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="118764" e_stop="118704"/>
          <exon e_start="118415" e_stop="118278"/>
          <exon e_start="118168" e_stop="118107"/>
          <exon e_start="118027" e_stop="117796"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCCAAAGCTCGTGCTTTAAAACGCATTGTTGGAGACCCTTTCAAGAAGGGAGTTGAACAAGGTCCGCAGGTACTGTTTTTTCGTGTATCGCTGTCCCCTCTGTCATGGATAATATATAAAAAGAGAATAGTTAAACAAATTCTTTGCCAACTTAAGGACAAGAAGGAATAATATATGTTCACCAATTTGGATGTAGCCAACTTTTCAGGCAATGGTACCTTTATTATTTCCTTTTCAGCATCTTACACAAACTTAAATCATGAATTTCCAGCAAAGAGAAGTAGTAATTACGGACTTCCATTTACATTTCTGAAGTAGTTGTAACATGAATGTTTTGTGTTATCAATAGATTGATACAGAGCAATTTGAGAAGATCCTGAAGTACATAAAATCTGGTACTGAAAGCGGGGCTACTCTCGAGTCTGGAGGGGAAAAATTGGGTTCCAAGGGCTTCTATGTCCAACCTACTGTCTTCTCAAATGTCCAGGTATAACTGCCATTGTCCATAGAATATATCCATACGTAAGGTGAAAAAGATGAGCATCGTACTGATGACATTTAATTGTTTTGTTTAAAATTATTTTTCAACTATTTAGGATAACATGCTGATTGCCAGAGATGAGATATTTGGACCAGTGCAGTCCCTCTTGAAATTCAAGTGAGATTACATTTCATTTGTATTGTATCTGTGCTTGTATTTTGTTTATTAACACTGAACCTGACCTTGAAACAAACAGGGATGTTGAAGAGGTCATCCGAAGGGCAAACTCGTCACATTATGGGTTGGCAGCGGGTGTTTTTACCCAGAATATAGATGCAGCCAACACAATATCTCGAGCCCTTAGAGTAGGGACAGTGTGGGTTAACTGCTTTAACATCTTTGATGCTGCCATTCCGTTTGGTGGTTATAAGATGAGTGGACATGGAAGAGAGAAGGGAGTCTACAGCCTAAGTAACTACTTGCAAGTC</genome_strand>
        <mrna_strand>GCCAAAGCTCGTGCTTTAAAACGCATTGTTGGAGACCCTTTCAAGAAGGGAGTTGAACAAG................................................................................................................................................................................................................................................................................................ATTGATACAGAGCAATTTGAGAAGATCCTGAAGTACATAAAATCTGGTACTGAAAGCGGGGCTACTCTCGAGTCTGGAGGGGAAAAATTGGGTTCCAAGGGCTTCTATGTCCAACCTACTGTCTTCTCAAATGTCCAG.............................................................................................................GATAACATGCTGATTGCCAGAGATGAGATATTTGGACCAGTGCAGTCCCTCTTGAAATTCAA...............................................................................GGATGTTGAAGAGGTCATCCGAAAGGCAAACTCGTCACATTATGGGTTGGCAGCGGGTGTTTTTACCCAGAATATAGATGCAGCCAACACAATATCTCGAGCCCTTAGAGTAGGGACAGTGTGGGTTAACTGCTTTAACATCTTTGATGCTGCCATTCCGTTTGGTGGTTATAAGATGAGTGGACATGGAAGAGAGAAGGGAGTCTACAGCCTAAATAACTACTTGCAAGTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0236E02-u8qcS/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E261730" ref_strand="+" ref_description="SGN-E261730 [cLEG-61-P21]">
      <seq>atgaggttggacttccccctggagtcttaaatgtcattcctggatccggtagtgcaggtgcagatcttgccagtcatatggatgtcgataagattgcttttacagggtccacagaaactggtaaagctgtcgtaggtgcagctgcaaagagcaacctaaaacctgtgacattggagctcggaggaaaatctcctttcatcatttgtgaagatgcagacgttgataaagctgttgagttggctcattctgctgttttctttaaccagggacaatgctgctgtgctggatctcggacattcgtacatgaaagagtatatgatgaatttgtggagaaagccaaagctcgtgctttaaaacgcattgttggagaccctttcaagaagggagttgaacaaggtccgcagattgatacagagcaatttgagaagatcctgaagtacataaaatctggtactgaaagcggggctactctcgagtctggaggggaaaaattgggttccaagggcttctatgtccaacctactgtcttctcaaatgtccaggataacatgctgattgccagagatgagatatttggaccagtgcagtccctcttgaaattcaaggatgttgaagaggtcatccgaagggcaaactcgtcacattatgggttggcagcgggtgtttttacccagaatatagatgcagccaacacaatatctcgagcccttagagtnaggacagtgtgggttaactgctttaacatctttgatgctgcca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0236E02-u8qcS/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0236E02.1" temp_strand="-" temp_description="C02HBa0236E02.1  AC215430.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0236E02 sequenced_by:kribb upload_account_name:korea">
        <position start="120120" stop="117573"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="120040" g_stop="120036" g_length="5"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="5" r_length="5" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="120035" i_stop="119817" i_length="219">
            <donor d_prob="0.959" d_score="0.00"/>
            <acceptor a_prob="0.980" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="119816" g_stop="119730" g_length="87"/>
          <reference_exon_boundary r_type="cDNA" r_start="6" r_stop="92" r_length="87" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="119729" i_stop="119087" i_length="643">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="119086" g_stop="118913" g_length="174"/>
          <reference_exon_boundary r_type="cDNA" r_start="93" r_stop="266" r_length="174" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="118912" i_stop="118834" i_length="79">
            <donor d_prob="0.933" d_score="1.00"/>
            <acceptor a_prob="0.857" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="118833" g_stop="118696" g_length="138"/>
          <reference_exon_boundary r_type="cDNA" r_start="267" r_stop="404" r_length="138" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="118695" i_stop="118416" i_length="280">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="118415" g_stop="118278" g_length="138"/>
          <reference_exon_boundary r_type="cDNA" r_start="405" r_stop="542" r_length="138" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="118277" i_stop="118169" i_length="109">
            <donor d_prob="0.961" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="118168" g_stop="118107" g_length="62"/>
          <reference_exon_boundary r_type="cDNA" r_start="543" r_stop="604" r_length="62" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="118106" i_stop="118028" i_length="79">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.920" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="118027" g_stop="117873" g_length="155"/>
          <reference_exon_boundary r_type="cDNA" r_start="605" r_stop="759" r_length="155" r_score="0.987"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0236E02.1" gen_strand="-" ref_id="SGN-E261730" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>759</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0236E02.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E261730" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="120040" e_stop="120036"/>
          <exon e_start="119816" e_stop="119730"/>
          <exon e_start="119086" e_stop="118913"/>
          <exon e_start="118833" e_stop="118696"/>
          <exon e_start="118415" e_stop="118278"/>
          <exon e_start="118168" e_stop="118107"/>
          <exon e_start="118027" e_stop="117873"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATGAGGTATATAACCATTTTTAGTCTGCACCGGTCGTGAATTCACAGAATTCTAATGAGTACTCATTTGTACTTGTCATTTAGTTATTTCTAGTATGTTGTTTACAAATTTAGTAGTTTCAAATATAGAAGTGGAAACTTTCCACAATTATTGCAGCTCAAATCGAAGATTTCTCCATCTATACAAGATGATAGAATGTAATTTGTCTTCACTCCAACTGTCAGGTTGGACTTCCCCCTGGAGTCTTAAATGTCATTCCTGGATCCGGTAGTGCAGGTGCAGATCTTGCCAGTCATATGGATGTCGATAAGGTATTTTCTGAGTTTTGGCTTTAGTTCCTGAATAGGAATTTACAGAAGAAATGGCTTATGTTTCTTCTGATAAACCTACACGACAAAGTCCAAGGCAGTTTCAGTATCAAATTTGAAATGTTGGATTGTATAAAGGAGTGTCAGAACACGGTATTTCAGTTTCAACATATCTCTAGGTAGCAATGAAGCTATCCGTCGCTAATTCTACCCCCTCTTCCATCCCAAAGAAGATTAAAAGAAGTAAATAGCCTAATTATAGTGTCTCATTAGATAGTATAATCCACATGTAGAAAATGAAGAAAATCATATCTTTTTCTTCCAGCTTCCCCATTAAAAGTCAATAAACAACATAAAGAGGTTATGCATCCTGATGTCCTTTCAGCTTTTGTATTTCATGCTTGCTTTTATTGATGCAGCTGTGATGTGTAAAGTTTTCTGAGTGAATACTCTGGAATAGATGAGGGAGACTGAAGGAGCACTGACATCTTCTACTACTTGTTTTCGTATAGATTTAAACAGCTTGGTCCTCGACATTACTTGCATCTTTTCCCCCTGTAAAATGTTTTTTTTTGGTGATTTTTTAATTTTTCTGTGATGTCTAAATTGCGATGTGTCTCTACATCACTCCTTTTGGTGTCTACAGATTGCTTTTACAGGGTCCACAGAAACTGGTAAAGCTGTCGTAGGTGCAGCTGCAAAGAGCAACCTAAAACCTGTGACATTGGAGCTCGGAGGAAAATCTCCTTTCATCATTTGTGAAGATGCAGACGTTGATAAAGCTGTTGAGTTGGCTCATTCTGCTGTTTTCTTTAACCAGGTAGCAAAAATTTCCACTCTTGGAAAATTGCAACCTCTGATGCTTGCTCCAGAATGGAATAAATTTCAAGTATCTGCAGGGACAATGCTGCTGTGCTGGATCTCGGACATTCGTACATGAAAGAGTATATGATGAATTTGTGGAGAAAGCCAAAGCTCGTGCTTTAAAACGCATTGTTGGAGACCCTTTCAAGAAGGGAGTTGAACAAGGTCCGCAGGTACTGTTTTTTCGTGTATCGCTGTCCCCTCTGTCATGGATAATATATAAAAAGAGAATAGTTAAACAAATTCTTTGCCAACTTAAGGACAAGAAGGAATAATATATGTTCACCAATTTGGATGTAGCCAACTTTTCAGGCAATGGTACCTTTATTATTTCCTTTTCAGCATCTTACACAAACTTAAATCATGAATTTCCAGCAAAGAGAAGTAGTAATTACGGACTTCCATTTACATTTCTGAAGTAGTTGTAACATGAATGTTTTGTGTTATCAATAGATTGATACAGAGCAATTTGAGAAGATCCTGAAGTACATAAAATCTGGTACTGAAAGCGGGGCTACTCTCGAGTCTGGAGGGGAAAAATTGGGTTCCAAGGGCTTCTATGTCCAACCTACTGTCTTCTCAAATGTCCAGGTATAACTGCCATTGTCCATAGAATATATCCATACGTAAGGTGAAAAAGATGAGCATCGTACTGATGACATTTAATTGTTTTGTTTAAAATTATTTTTCAACTATTTAGGATAACATGCTGATTGCCAGAGATGAGATATTTGGACCAGTGCAGTCCCTCTTGAAATTCAAGTGAGATTACATTTCATTTGTATTGTATCTGTGCTTGTATTTTGTTTATTAACACTGAACCTGACCTTGAAACAAACAGGGATGTTGAAGAGGTCATCCGAAGGGCAAACTCGTCACATTATGGGTTGGCAGCGGGTGTTTTTACCCAGAATATAGATGCAGCCAACACAATATCTCGAGCCCTTAGAGTAGGGACAGTGTGGGTTAACTGCTTTAACATCTTTGATGCTGCCA</genome_strand>
        <mrna_strand>ATGAG...........................................................................................................................................................................................................................GTTGGACTTCCCCCTGGAGTCTTAAATGTCATTCCTGGATCCGGTAGTGCAGGTGCAGATCTTGCCAGTCATATGGATGTCGATAAG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTGCTTTTACAGGGTCCACAGAAACTGGTAAAGCTGTCGTAGGTGCAGCTGCAAAGAGCAACCTAAAACCTGTGACATTGGAGCTCGGAGGAAAATCTCCTTTCATCATTTGTGAAGATGCAGACGTTGATAAAGCTGTTGAGTTGGCTCATTCTGCTGTTTTCTTTAACCAG...............................................................................GGACAATGCTGCTGTGCTGGATCTCGGACATTCGTACATGAAAGAGTATATGATGAATTTGTGGAGAAAGCCAAAGCTCGTGCTTTAAAACGCATTGTTGGAGACCCTTTCAAGAAGGGAGTTGAACAAGGTCCGCAG........................................................................................................................................................................................................................................................................................ATTGATACAGAGCAATTTGAGAAGATCCTGAAGTACATAAAATCTGGTACTGAAAGCGGGGCTACTCTCGAGTCTGGAGGGGAAAAATTGGGTTCCAAGGGCTTCTATGTCCAACCTACTGTCTTCTCAAATGTCCAG.............................................................................................................GATAACATGCTGATTGCCAGAGATGAGATATTTGGACCAGTGCAGTCCCTCTTGAAATTCAA...............................................................................GGATGTTGAAGAGGTCATCCGAAGGGCAAACTCGTCACATTATGGGTTGGCAGCGGGTGTTTTTACCCAGAATATAGATGCAGCCAACACAATATCTCGAGCCCTTAGAGTNAGGACAGTGTGGGTTAACTGCTTTAACATCTTTGATGCTGCCA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0236E02-u8qcS/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E264242" ref_strand="+" ref_description="SGN-E264242 [cLEG-70-D3]">
      <seq>ccgcagattgatacagagcaatttgagaagatcctgaagtacataaaatctggtactgaaagcggggctactctcgagtctggaggggaaaaattgggttccaagggcttctatgtccaacctactgtcttctcaaatgtccaggataacatgctgattgccagagatgagatatttggac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0236E02-u8qcS/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0236E02.1" temp_strand="-" temp_description="C02HBa0236E02.1  AC215430.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0236E02 sequenced_by:kribb upload_account_name:korea">
        <position start="118717" stop="117832"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="118701" g_stop="118696" g_length="6"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="6" r_length="6" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="118695" i_stop="118416" i_length="280">
            <donor d_prob="0.997" d_score="0.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="118415" g_stop="118278" g_length="138"/>
          <reference_exon_boundary r_type="cDNA" r_start="7" r_stop="144" r_length="138" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="118277" i_stop="118169" i_length="109">
            <donor d_prob="0.961" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="118168" g_stop="118132" g_length="37"/>
          <reference_exon_boundary r_type="cDNA" r_start="145" r_stop="181" r_length="37" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0236E02.1" gen_strand="-" ref_id="SGN-E264242" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>181</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0236E02.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E264242" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="118701" e_stop="118696"/>
          <exon e_start="118415" e_stop="118278"/>
          <exon e_start="118168" e_stop="118132"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCGCAGGTACTGTTTTTTCGTGTATCGCTGTCCCCTCTGTCATGGATAATATATAAAAAGAGAATAGTTAAACAAATTCTTTGCCAACTTAAGGACAAGAAGGAATAATATATGTTCACCAATTTGGATGTAGCCAACTTTTCAGGCAATGGTACCTTTATTATTTCCTTTTCAGCATCTTACACAAACTTAAATCATGAATTTCCAGCAAAGAGAAGTAGTAATTACGGACTTCCATTTACATTTCTGAAGTAGTTGTAACATGAATGTTTTGTGTTATCAATAGATTGATACAGAGCAATTTGAGAAGATCCTGAAGTACATAAAATCTGGTACTGAAAGCGGGGCTACTCTCGAGTCTGGAGGGGAAAAATTGGGTTCCAAGGGCTTCTATGTCCAACCTACTGTCTTCTCAAATGTCCAGGTATAACTGCCATTGTCCATAGAATATATCCATACGTAAGGTGAAAAAGATGAGCATCGTACTGATGACATTTAATTGTTTTGTTTAAAATTATTTTTCAACTATTTAGGATAACATGCTGATTGCCAGAGATGAGATATTTGGAC</genome_strand>
        <mrna_strand>CCGCAG........................................................................................................................................................................................................................................................................................ATTGATACAGAGCAATTTGAGAAGATCCTGAAGTACATAAAATCTGGTACTGAAAGCGGGGCTACTCTCGAGTCTGGAGGGGAAAAATTGGGTTCCAAGGGCTTCTATGTCCAACCTACTGTCTTCTCAAATGTCCAG.............................................................................................................GATAACATGCTGATTGCCAGAGATGAGATATTTGGAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0236E02-u8qcS/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E255543" ref_strand="+" ref_description="SGN-E255543 [cLEG-30-F8]">
      <seq>tgtcattcctggatccggtagtgcaggtgcagatcttgccagtcatatggatgtccataagattgcttttacagggtccacagaaactggtaaagctgtcgtaggtgcagctgcaaagagcaacctaaaacctgtgacattggagctcggaggaaaatctcctttcatcatttgtgaagatgcagacgttgataaagctgttgagttggctcattctgctgttttctttaaccagggacaatgctgctgtgctggatctcggacattcgtacatgaaagagtatatgatgaatttgtggagaaagccaaagctcgtgctttaaaacgcattgttggagaccctttcaagaagggagttgaacaacgtccgcagattgatacagagcaatttgagaagatcctgaagtacataaaatctggtactgaaagcggggctactctcgagtctggaggggaaaaattgggttccaagggcttctatgtccaacctactgtcttctcaaatgtccaagataacatgctgat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0236E02-u8qcS/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0236E02.1" temp_strand="-" temp_description="C02HBa0236E02.1  AC215430.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0236E02 sequenced_by:kribb upload_account_name:korea">
        <position start="120090" stop="117968"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="119790" g_stop="119730" g_length="61"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="61" r_length="61" r_score="0.984"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="119729" i_stop="119087" i_length="643">
            <donor d_prob="0.996" d_score="0.98"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="119086" g_stop="118913" g_length="174"/>
          <reference_exon_boundary r_type="cDNA" r_start="62" r_stop="235" r_length="174" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="118912" i_stop="118834" i_length="79">
            <donor d_prob="0.933" d_score="1.00"/>
            <acceptor a_prob="0.857" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="118833" g_stop="118696" g_length="138"/>
          <reference_exon_boundary r_type="cDNA" r_start="236" r_stop="373" r_length="138" r_score="0.993"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="118695" i_stop="118416" i_length="280">
            <donor d_prob="0.997" d_score="0.98"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="118415" g_stop="118278" g_length="138"/>
          <reference_exon_boundary r_type="cDNA" r_start="374" r_stop="511" r_length="138" r_score="0.993"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="118277" i_stop="118169" i_length="109">
            <donor d_prob="0.961" d_score="0.98"/>
            <acceptor a_prob="0.997" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="118168" g_stop="118155" g_length="14"/>
          <reference_exon_boundary r_type="cDNA" r_start="512" r_stop="525" r_length="14" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0236E02.1" gen_strand="-" ref_id="SGN-E255543" ref_strand="+">
        <total_alignment_score>0.994</total_alignment_score>
        <cumulative_length_of_scored_exons>525</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0236E02.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E255543" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="119790" e_stop="119730"/>
          <exon e_start="119086" e_stop="118913"/>
          <exon e_start="118833" e_stop="118696"/>
          <exon e_start="118415" e_stop="118278"/>
          <exon e_start="118168" e_stop="118155"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGTCATTCCTGGATCCGGTAGTGCAGGTGCAGATCTTGCCAGTCATATGGATGTCGATAAGGTATTTTCTGAGTTTTGGCTTTAGTTCCTGAATAGGAATTTACAGAAGAAATGGCTTATGTTTCTTCTGATAAACCTACACGACAAAGTCCAAGGCAGTTTCAGTATCAAATTTGAAATGTTGGATTGTATAAAGGAGTGTCAGAACACGGTATTTCAGTTTCAACATATCTCTAGGTAGCAATGAAGCTATCCGTCGCTAATTCTACCCCCTCTTCCATCCCAAAGAAGATTAAAAGAAGTAAATAGCCTAATTATAGTGTCTCATTAGATAGTATAATCCACATGTAGAAAATGAAGAAAATCATATCTTTTTCTTCCAGCTTCCCCATTAAAAGTCAATAAACAACATAAAGAGGTTATGCATCCTGATGTCCTTTCAGCTTTTGTATTTCATGCTTGCTTTTATTGATGCAGCTGTGATGTGTAAAGTTTTCTGAGTGAATACTCTGGAATAGATGAGGGAGACTGAAGGAGCACTGACATCTTCTACTACTTGTTTTCGTATAGATTTAAACAGCTTGGTCCTCGACATTACTTGCATCTTTTCCCCCTGTAAAATGTTTTTTTTTGGTGATTTTTTAATTTTTCTGTGATGTCTAAATTGCGATGTGTCTCTACATCACTCCTTTTGGTGTCTACAGATTGCTTTTACAGGGTCCACAGAAACTGGTAAAGCTGTCGTAGGTGCAGCTGCAAAGAGCAACCTAAAACCTGTGACATTGGAGCTCGGAGGAAAATCTCCTTTCATCATTTGTGAAGATGCAGACGTTGATAAAGCTGTTGAGTTGGCTCATTCTGCTGTTTTCTTTAACCAGGTAGCAAAAATTTCCACTCTTGGAAAATTGCAACCTCTGATGCTTGCTCCAGAATGGAATAAATTTCAAGTATCTGCAGGGACAATGCTGCTGTGCTGGATCTCGGACATTCGTACATGAAAGAGTATATGATGAATTTGTGGAGAAAGCCAAAGCTCGTGCTTTAAAACGCATTGTTGGAGACCCTTTCAAGAAGGGAGTTGAACAAGGTCCGCAGGTACTGTTTTTTCGTGTATCGCTGTCCCCTCTGTCATGGATAATATATAAAAAGAGAATAGTTAAACAAATTCTTTGCCAACTTAAGGACAAGAAGGAATAATATATGTTCACCAATTTGGATGTAGCCAACTTTTCAGGCAATGGTACCTTTATTATTTCCTTTTCAGCATCTTACACAAACTTAAATCATGAATTTCCAGCAAAGAGAAGTAGTAATTACGGACTTCCATTTACATTTCTGAAGTAGTTGTAACATGAATGTTTTGTGTTATCAATAGATTGATACAGAGCAATTTGAGAAGATCCTGAAGTACATAAAATCTGGTACTGAAAGCGGGGCTACTCTCGAGTCTGGAGGGGAAAAATTGGGTTCCAAGGGCTTCTATGTCCAACCTACTGTCTTCTCAAATGTCCAGGTATAACTGCCATTGTCCATAGAATATATCCATACGTAAGGTGAAAAAGATGAGCATCGTACTGATGACATTTAATTGTTTTGTTTAAAATTATTTTTCAACTATTTAGGATAACATGCTGAT</genome_strand>
        <mrna_strand>TGTCATTCCTGGATCCGGTAGTGCAGGTGCAGATCTTGCCAGTCATATGGATGTCCATAAG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTGCTTTTACAGGGTCCACAGAAACTGGTAAAGCTGTCGTAGGTGCAGCTGCAAAGAGCAACCTAAAACCTGTGACATTGGAGCTCGGAGGAAAATCTCCTTTCATCATTTGTGAAGATGCAGACGTTGATAAAGCTGTTGAGTTGGCTCATTCTGCTGTTTTCTTTAACCAG...............................................................................GGACAATGCTGCTGTGCTGGATCTCGGACATTCGTACATGAAAGAGTATATGATGAATTTGTGGAGAAAGCCAAAGCTCGTGCTTTAAAACGCATTGTTGGAGACCCTTTCAAGAAGGGAGTTGAACAACGTCCGCAG........................................................................................................................................................................................................................................................................................ATTGATACAGAGCAATTTGAGAAGATCCTGAAGTACATAAAATCTGGTACTGAAAGCGGGGCTACTCTCGAGTCTGGAGGGGAAAAATTGGGTTCCAAGGGCTTCTATGTCCAACCTACTGTCTTCTCAAATGTCCAA.............................................................................................................GATAACATGCTGAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0236E02-u8qcS/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E246306" ref_strand="+" ref_description="SGN-E246306 [cLEF-40-J19]">
      <seq>cattacttgcatcttttccccctgtaaaatgtttttttttggtgattttttaatttttctgtgatgtctaaattgcgatgtgtctctacatcactccttttggtgtctacagattgcttttacagggtccacagaaactggtaaagctgtcgtaggtgcagctgcaaagagcaacctaaaacctgtgacattggagctcggaggaaaatctcctttcatcatttgtgaagatgcagacgttgataaagctgttgagttggctcattctgctgttttctttaaccagggacaatgctgctgtgctggatctcggacattcgtacatgaaagagtatatgatgaatttgtggagaaagccaaagctcgtgctttaaaacgcattgttggagaccctttcaagaagggagttgaacaaggtccgcagattgatacagagcaatttgagaagatcctgaagtacataaaatctggtactgaaagcggggctactctcg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0236E02-u8qcS/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0236E02.1" temp_strand="-" temp_description="C02HBa0236E02.1  AC215430.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0236E02 sequenced_by:kribb upload_account_name:korea">
        <position start="119498" stop="118046"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="119198" g_stop="118913" g_length="286"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="286" r_length="286" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="118912" i_stop="118834" i_length="79">
            <donor d_prob="0.933" d_score="1.00"/>
            <acceptor a_prob="0.857" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="118833" g_stop="118696" g_length="138"/>
          <reference_exon_boundary r_type="cDNA" r_start="287" r_stop="424" r_length="138" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="118695" i_stop="118416" i_length="280">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="118415" g_stop="118346" g_length="70"/>
          <reference_exon_boundary r_type="cDNA" r_start="425" r_stop="494" r_length="70" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0236E02.1" gen_strand="-" ref_id="SGN-E246306" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>494</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0236E02.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E246306" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="119198" e_stop="118913"/>
          <exon e_start="118833" e_stop="118696"/>
          <exon e_start="118415" e_stop="118346"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CATTACTTGCATCTTTTCCCCCTGTAAAATGTTTTTTTTTGGTGATTTTTTAATTTTTCTGTGATGTCTAAATTGCGATGTGTCTCTACATCACTCCTTTTGGTGTCTACAGATTGCTTTTACAGGGTCCACAGAAACTGGTAAAGCTGTCGTAGGTGCAGCTGCAAAGAGCAACCTAAAACCTGTGACATTGGAGCTCGGAGGAAAATCTCCTTTCATCATTTGTGAAGATGCAGACGTTGATAAAGCTGTTGAGTTGGCTCATTCTGCTGTTTTCTTTAACCAGGTAGCAAAAATTTCCACTCTTGGAAAATTGCAACCTCTGATGCTTGCTCCAGAATGGAATAAATTTCAAGTATCTGCAGGGACAATGCTGCTGTGCTGGATCTCGGACATTCGTACATGAAAGAGTATATGATGAATTTGTGGAGAAAGCCAAAGCTCGTGCTTTAAAACGCATTGTTGGAGACCCTTTCAAGAAGGGAGTTGAACAAGGTCCGCAGGTACTGTTTTTTCGTGTATCGCTGTCCCCTCTGTCATGGATAATATATAAAAAGAGAATAGTTAAACAAATTCTTTGCCAACTTAAGGACAAGAAGGAATAATATATGTTCACCAATTTGGATGTAGCCAACTTTTCAGGCAATGGTACCTTTATTATTTCCTTTTCAGCATCTTACACAAACTTAAATCATGAATTTCCAGCAAAGAGAAGTAGTAATTACGGACTTCCATTTACATTTCTGAAGTAGTTGTAACATGAATGTTTTGTGTTATCAATAGATTGATACAGAGCAATTTGAGAAGATCCTGAAGTACATAAAATCTGGTACTGAAAGCGGGGCTACTCTCG</genome_strand>
        <mrna_strand>CATTACTTGCATCTTTTCCCCCTGTAAAATGTTTTTTTTTGGTGATTTTTTAATTTTTCTGTGATGTCTAAATTGCGATGTGTCTCTACATCACTCCTTTTGGTGTCTACAGATTGCTTTTACAGGGTCCACAGAAACTGGTAAAGCTGTCGTAGGTGCAGCTGCAAAGAGCAACCTAAAACCTGTGACATTGGAGCTCGGAGGAAAATCTCCTTTCATCATTTGTGAAGATGCAGACGTTGATAAAGCTGTTGAGTTGGCTCATTCTGCTGTTTTCTTTAACCAG...............................................................................GGACAATGCTGCTGTGCTGGATCTCGGACATTCGTACATGAAAGAGTATATGATGAATTTGTGGAGAAAGCCAAAGCTCGTGCTTTAAAACGCATTGTTGGAGACCCTTTCAAGAAGGGAGTTGAACAAGGTCCGCAG........................................................................................................................................................................................................................................................................................ATTGATACAGAGCAATTTGAGAAGATCCTGAAGTACATAAAATCTGGTACTGAAAGCGGGGCTACTCTCG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0236E02-u8qcS/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E229381" ref_strand="+" ref_description="SGN-E229381 [cLEL-4-J9](-)">
      <seq>aagctgtcgtaggtgcagctgcaaagagcaacctaaaacctgtgacattggagctcggaggaaaatctcctttcatcatttgtgaagatgcagacgttgataaagctgttgagttggctcattctgctgttttctttaaccagggacaatgctgctgtgctggatctcggacattcgtacatgaaagagtatatgatgaatttgtggagaaagccaaagctcgtgctttaaaacgcattgttggagaccctttcaagaagggagttgaacaaggtccgcagattgatacagagcaatttgagaagatcctgaagtacataaaatctggtactaaaagcggggca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0236E02-u8qcS/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0236E02.1" temp_strand="-" temp_description="C02HBa0236E02.1  AC215430.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0236E02 sequenced_by:kribb upload_account_name:korea">
        <position start="119355" stop="118054"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="119055" g_stop="118913" g_length="143"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="143" r_length="143" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="118912" i_stop="118834" i_length="79">
            <donor d_prob="0.933" d_score="1.00"/>
            <acceptor a_prob="0.857" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="118833" g_stop="118696" g_length="138"/>
          <reference_exon_boundary r_type="cDNA" r_start="144" r_stop="281" r_length="138" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="118695" i_stop="118416" i_length="280">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="118415" g_stop="118353" g_length="63"/>
          <reference_exon_boundary r_type="cDNA" r_start="282" r_stop="344" r_length="63" r_score="0.968"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0236E02.1" gen_strand="-" ref_id="SGN-E229381" ref_strand="+">
        <total_alignment_score>0.994</total_alignment_score>
        <cumulative_length_of_scored_exons>344</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0236E02.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E229381" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="119055" e_stop="118913"/>
          <exon e_start="118833" e_stop="118696"/>
          <exon e_start="118415" e_stop="118353"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAGCTGTCGTAGGTGCAGCTGCAAAGAGCAACCTAAAACCTGTGACATTGGAGCTCGGAGGAAAATCTCCTTTCATCATTTGTGAAGATGCAGACGTTGATAAAGCTGTTGAGTTGGCTCATTCTGCTGTTTTCTTTAACCAGGTAGCAAAAATTTCCACTCTTGGAAAATTGCAACCTCTGATGCTTGCTCCAGAATGGAATAAATTTCAAGTATCTGCAGGGACAATGCTGCTGTGCTGGATCTCGGACATTCGTACATGAAAGAGTATATGATGAATTTGTGGAGAAAGCCAAAGCTCGTGCTTTAAAACGCATTGTTGGAGACCCTTTCAAGAAGGGAGTTGAACAAGGTCCGCAGGTACTGTTTTTTCGTGTATCGCTGTCCCCTCTGTCATGGATAATATATAAAAAGAGAATAGTTAAACAAATTCTTTGCCAACTTAAGGACAAGAAGGAATAATATATGTTCACCAATTTGGATGTAGCCAACTTTTCAGGCAATGGTACCTTTATTATTTCCTTTTCAGCATCTTACACAAACTTAAATCATGAATTTCCAGCAAAGAGAAGTAGTAATTACGGACTTCCATTTACATTTCTGAAGTAGTTGTAACATGAATGTTTTGTGTTATCAATAGATTGATACAGAGCAATTTGAGAAGATCCTGAAGTACATAAAATCTGGTACTGAAAGCGGGGCT</genome_strand>
        <mrna_strand>AAGCTGTCGTAGGTGCAGCTGCAAAGAGCAACCTAAAACCTGTGACATTGGAGCTCGGAGGAAAATCTCCTTTCATCATTTGTGAAGATGCAGACGTTGATAAAGCTGTTGAGTTGGCTCATTCTGCTGTTTTCTTTAACCAG...............................................................................GGACAATGCTGCTGTGCTGGATCTCGGACATTCGTACATGAAAGAGTATATGATGAATTTGTGGAGAAAGCCAAAGCTCGTGCTTTAAAACGCATTGTTGGAGACCCTTTCAAGAAGGGAGTTGAACAAGGTCCGCAG........................................................................................................................................................................................................................................................................................ATTGATACAGAGCAATTTGAGAAGATCCTGAAGTACATAAAATCTGGTACTAAAAGCGGGGCA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0236E02-u8qcS/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E229740" ref_strand="+" ref_description="SGN-E229740 [cLEL-4-J9](-)">
      <seq>caacctaaaacctgtgacattgaagctcgaaggaaaatctcctttcatcatttgtgaagatgcagacgttgataaagctgttgagttggctcattctgctgttttctttaaccagggacaatgctgctgtgctggatctcggacattcgtacatgaaagagtatatgatgaatttgtggagaaagccaaagctcgtgctttaaaacgcattgttggagaccctttcaagaagggagttgaacaaggtccgcagattgatacagagcaatttgagaagatcctgaagtacataaaatctggtactgaaag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0236E02-u8qcS/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0236E02.1" temp_strand="-" temp_description="C02HBa0236E02.1  AC215430.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0236E02 sequenced_by:kribb upload_account_name:korea">
        <position start="119327" stop="118060"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="119027" g_stop="118913" g_length="115"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="115" r_length="115" r_score="0.983"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="118912" i_stop="118834" i_length="79">
            <donor d_prob="0.933" d_score="1.00"/>
            <acceptor a_prob="0.857" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="118833" g_stop="118696" g_length="138"/>
          <reference_exon_boundary r_type="cDNA" r_start="116" r_stop="253" r_length="138" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="118695" i_stop="118416" i_length="280">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="118415" g_stop="118360" g_length="56"/>
          <reference_exon_boundary r_type="cDNA" r_start="254" r_stop="309" r_length="56" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0236E02.1" gen_strand="-" ref_id="SGN-E229740" ref_strand="+">
        <total_alignment_score>0.994</total_alignment_score>
        <cumulative_length_of_scored_exons>309</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0236E02.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E229740" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="119027" e_stop="118913"/>
          <exon e_start="118833" e_stop="118696"/>
          <exon e_start="118415" e_stop="118360"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAACCTAAAACCTGTGACATTGGAGCTCGGAGGAAAATCTCCTTTCATCATTTGTGAAGATGCAGACGTTGATAAAGCTGTTGAGTTGGCTCATTCTGCTGTTTTCTTTAACCAGGTAGCAAAAATTTCCACTCTTGGAAAATTGCAACCTCTGATGCTTGCTCCAGAATGGAATAAATTTCAAGTATCTGCAGGGACAATGCTGCTGTGCTGGATCTCGGACATTCGTACATGAAAGAGTATATGATGAATTTGTGGAGAAAGCCAAAGCTCGTGCTTTAAAACGCATTGTTGGAGACCCTTTCAAGAAGGGAGTTGAACAAGGTCCGCAGGTACTGTTTTTTCGTGTATCGCTGTCCCCTCTGTCATGGATAATATATAAAAAGAGAATAGTTAAACAAATTCTTTGCCAACTTAAGGACAAGAAGGAATAATATATGTTCACCAATTTGGATGTAGCCAACTTTTCAGGCAATGGTACCTTTATTATTTCCTTTTCAGCATCTTACACAAACTTAAATCATGAATTTCCAGCAAAGAGAAGTAGTAATTACGGACTTCCATTTACATTTCTGAAGTAGTTGTAACATGAATGTTTTGTGTTATCAATAGATTGATACAGAGCAATTTGAGAAGATCCTGAAGTACATAAAATCTGGTACTGAAAG</genome_strand>
        <mrna_strand>CAACCTAAAACCTGTGACATTGAAGCTCGAAGGAAAATCTCCTTTCATCATTTGTGAAGATGCAGACGTTGATAAAGCTGTTGAGTTGGCTCATTCTGCTGTTTTCTTTAACCAG...............................................................................GGACAATGCTGCTGTGCTGGATCTCGGACATTCGTACATGAAAGAGTATATGATGAATTTGTGGAGAAAGCCAAAGCTCGTGCTTTAAAACGCATTGTTGGAGACCCTTTCAAGAAGGGAGTTGAACAAGGTCCGCAG........................................................................................................................................................................................................................................................................................ATTGATACAGAGCAATTTGAGAAGATCCTGAAGTACATAAAATCTGGTACTGAAAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0236E02-u8qcS/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E338365" ref_strand="+" ref_description="SGN-E338365 [cTOE-13-N12]">
      <seq>gataagattgcttttacagggtccacagaaactggtaaagctgtcgtaggtgcagctgcaaagagcaacctaaaacctgtgacattggagctcggaggaaaatctcctttcatcatttgtgaagatgcagacgttgataaagctgttgagttggctcattctgctgttttctttaaccagggacaatgctgctgtgctggatctcggacattcgtacatgaaagagtatatgatgaatttgtggagaaagccaaagctcgtgctttaaaacgcattgttggagaccctttcaag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0236E02-u8qcS/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0236E02.1" temp_strand="-" temp_description="C02HBa0236E02.1  AC215430.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0236E02 sequenced_by:kribb upload_account_name:korea">
        <position start="119391" stop="118420"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="119093" g_stop="118913" g_length="181"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="180" r_length="180" r_score="0.983"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="118912" i_stop="118834" i_length="79">
            <donor d_prob="0.933" d_score="1.00"/>
            <acceptor a_prob="0.857" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="118833" g_stop="118720" g_length="114"/>
          <reference_exon_boundary r_type="cDNA" r_start="181" r_stop="294" r_length="114" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0236E02.1" gen_strand="-" ref_id="SGN-E338365" ref_strand="+">
        <total_alignment_score>0.990</total_alignment_score>
        <cumulative_length_of_scored_exons>295</cumulative_length_of_scored_exons>
        <coverage percentage="1.003" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0236E02.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E338365" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="119093" e_stop="118913"/>
          <exon e_start="118833" e_stop="118720"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCTACAGATTGCTTTTACAGGGTCCACAGAAACTGGTAAAGCTGTCGTAGGTGCAGCTGCAAAGAGCAACCTAAAACCTGTGACATTGGAGCTCGGAGGAAAATCTCCTTTCATCATTTGTGAAGATGCAGACGTTGATAAAGCTGTTGAGTTGGCTCATTCTGCTGTTTTCTTTAACCAGGTAGCAAAAATTTCCACTCTTGGAAAATTGCAACCTCTGATGCTTGCTCCAGAATGGAATAAATTTCAAGTATCTGCAGGGACAATGCTGCTGTGCTGGATCTCGGACATTCGTACATGAAAGAGTATATGATGAATTTGTGGAGAAAGCCAAAGCTCGTGCTTTAAAACGCATTGTTGGAGACCCTTTCAAG</genome_strand>
        <mrna_strand>GATA-AGATTGCTTTTACAGGGTCCACAGAAACTGGTAAAGCTGTCGTAGGTGCAGCTGCAAAGAGCAACCTAAAACCTGTGACATTGGAGCTCGGAGGAAAATCTCCTTTCATCATTTGTGAAGATGCAGACGTTGATAAAGCTGTTGAGTTGGCTCATTCTGCTGTTTTCTTTAACCAG...............................................................................GGACAATGCTGCTGTGCTGGATCTCGGACATTCGTACATGAAAGAGTATATGATGAATTTGTGGAGAAAGCCAAAGCTCGTGCTTTAAAACGCATTGTTGGAGACCCTTTCAAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0236E02-u8qcS/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E249288" ref_strand="+" ref_description="SGN-E249288 [cLEF-50-L24]">
      <seq>caattggtgttgcaagacagataataccctggaattttccgttattaatgttcgcctggaaagttggccctgcacttgcttgtggtaacactgtcgtactaaaaccagcagaacaaacaccactctctgccctgtatgtgtcaaagttattccatgaagttggacttccccctggagtcttaaatgtcattcctggatccggtagtgcaggtgcagatcttgccagtcatatggatgtcgataagattgcttttacagggtccacagaaactggtaaagctgtcgtaggtgcagctgcaaagagcaacctaaaacctgtgacattggagctcggaggaaaatctcctttcatcatttgtgaagatgcagacgttgataaagctgttgagttggctcattctgctgttttctttaaccagggacaatgctgctgtgctggatctcggacattcgtacatgaaagagtatatgatgaatttgtggagaaagccaaagctcgtgctttaaaacgcattgttggagaccctt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0236E02-u8qcS/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0236E02.1" temp_strand="-" temp_description="C02HBa0236E02.1  AC215430.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0236E02 sequenced_by:kribb upload_account_name:korea">
        <position start="120493" stop="118425"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="120193" g_stop="120036" g_length="158"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="158" r_length="158" r_score="0.987"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="120035" i_stop="119817" i_length="219">
            <donor d_prob="0.959" d_score="0.98"/>
            <acceptor a_prob="0.980" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="119816" g_stop="119730" g_length="87"/>
          <reference_exon_boundary r_type="cDNA" r_start="159" r_stop="245" r_length="87" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="119729" i_stop="119087" i_length="643">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="119086" g_stop="118913" g_length="174"/>
          <reference_exon_boundary r_type="cDNA" r_start="246" r_stop="419" r_length="174" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="118912" i_stop="118834" i_length="79">
            <donor d_prob="0.933" d_score="1.00"/>
            <acceptor a_prob="0.857" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="118833" g_stop="118725" g_length="109"/>
          <reference_exon_boundary r_type="cDNA" r_start="420" r_stop="528" r_length="109" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0236E02.1" gen_strand="-" ref_id="SGN-E249288" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>528</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0236E02.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E249288" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="120193" e_stop="120036"/>
          <exon e_start="119816" e_stop="119730"/>
          <exon e_start="119086" e_stop="118913"/>
          <exon e_start="118833" e_stop="118725"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAATTGGTGTTGCAGGACAGATAATACCCTGGAATTTTCCGTTATTAATGTTCGCCTGGAAAGTTGGCCCTGCACTTGCTTGTGGTAACACTGTCGTACTAAAACCAGCAGAACAAACACCACTCTCTGCCCTGTATGTGTCAAAGTTATTCCATGAGGTATATAACCATTTTTAGTCTGCACCGGTCGTGAATTCACAGAATTCTAATGAGTACTCATTTGTACTTGTCATTTAGTTATTTCTAGTATGTTGTTTACAAATTTAGTAGTTTCAAATATAGAAGTGGAAACTTTCCACAATTATTGCAGCTCAAATCGAAGATTTCTCCATCTATACAAGATGATAGAATGTAATTTGTCTTCACTCCAACTGTCAGGTTGGACTTCCCCCTGGAGTCTTAAATGTCATTCCTGGATCCGGTAGTGCAGGTGCAGATCTTGCCAGTCATATGGATGTCGATAAGGTATTTTCTGAGTTTTGGCTTTAGTTCCTGAATAGGAATTTACAGAAGAAATGGCTTATGTTTCTTCTGATAAACCTACACGACAAAGTCCAAGGCAGTTTCAGTATCAAATTTGAAATGTTGGATTGTATAAAGGAGTGTCAGAACACGGTATTTCAGTTTCAACATATCTCTAGGTAGCAATGAAGCTATCCGTCGCTAATTCTACCCCCTCTTCCATCCCAAAGAAGATTAAAAGAAGTAAATAGCCTAATTATAGTGTCTCATTAGATAGTATAATCCACATGTAGAAAATGAAGAAAATCATATCTTTTTCTTCCAGCTTCCCCATTAAAAGTCAATAAACAACATAAAGAGGTTATGCATCCTGATGTCCTTTCAGCTTTTGTATTTCATGCTTGCTTTTATTGATGCAGCTGTGATGTGTAAAGTTTTCTGAGTGAATACTCTGGAATAGATGAGGGAGACTGAAGGAGCACTGACATCTTCTACTACTTGTTTTCGTATAGATTTAAACAGCTTGGTCCTCGACATTACTTGCATCTTTTCCCCCTGTAAAATGTTTTTTTTTGGTGATTTTTTAATTTTTCTGTGATGTCTAAATTGCGATGTGTCTCTACATCACTCCTTTTGGTGTCTACAGATTGCTTTTACAGGGTCCACAGAAACTGGTAAAGCTGTCGTAGGTGCAGCTGCAAAGAGCAACCTAAAACCTGTGACATTGGAGCTCGGAGGAAAATCTCCTTTCATCATTTGTGAAGATGCAGACGTTGATAAAGCTGTTGAGTTGGCTCATTCTGCTGTTTTCTTTAACCAGGTAGCAAAAATTTCCACTCTTGGAAAATTGCAACCTCTGATGCTTGCTCCAGAATGGAATAAATTTCAAGTATCTGCAGGGACAATGCTGCTGTGCTGGATCTCGGACATTCGTACATGAAAGAGTATATGATGAATTTGTGGAGAAAGCCAAAGCTCGTGCTTTAAAACGCATTGTTGGAGACCCTT</genome_strand>
        <mrna_strand>CAATTGGTGTTGCAAGACAGATAATACCCTGGAATTTTCCGTTATTAATGTTCGCCTGGAAAGTTGGCCCTGCACTTGCTTGTGGTAACACTGTCGTACTAAAACCAGCAGAACAAACACCACTCTCTGCCCTGTATGTGTCAAAGTTATTCCATGAA...........................................................................................................................................................................................................................GTTGGACTTCCCCCTGGAGTCTTAAATGTCATTCCTGGATCCGGTAGTGCAGGTGCAGATCTTGCCAGTCATATGGATGTCGATAAG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTGCTTTTACAGGGTCCACAGAAACTGGTAAAGCTGTCGTAGGTGCAGCTGCAAAGAGCAACCTAAAACCTGTGACATTGGAGCTCGGAGGAAAATCTCCTTTCATCATTTGTGAAGATGCAGACGTTGATAAAGCTGTTGAGTTGGCTCATTCTGCTGTTTTCTTTAACCAG...............................................................................GGACAATGCTGCTGTGCTGGATCTCGGACATTCGTACATGAAAGAGTATATGATGAATTTGTGGAGAAAGCCAAAGCTCGTGCTTTAAAACGCATTGTTGGAGACCCTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0236E02-u8qcS/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E275091" ref_strand="+" ref_description="SGN-E275091 [cLEN-9-O9]">
      <seq>ttaatgttagcttggaaagttggccctgcacttgcttgtggtaacactgtcgtactaaaaccagcagaacaaacaccactctctgccctgtatgtgtcaaagttattccatgaggttggacttccccctggagtcttaaatgtcattcctggatccggtagtgcaggtgcagatcttgccagtcatatggatgtcgataagattgcttttacagggtccacagaaactggtaaagctgtcgtaggtgcagctgcaaagagcaacctaaaacctgtgacattggagctcggaggaaaatctcctttcatcatttgtgaagatgcagacgttgataaagctgttgagttggctcattctgctgttttctttaaccagggacaatgctgctgtgctggatctcggacattcgtacatgaaagagtatatgatgaatttgtggagaaagccaaagctcgtgctttaaaacgcatt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0236E02-u8qcS/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0236E02.1" temp_strand="-" temp_description="C02HBa0236E02.1  AC215430.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0236E02 sequenced_by:kribb upload_account_name:korea">
        <position start="120449" stop="118438"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="120149" g_stop="120036" g_length="114"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="114" r_length="114" r_score="0.982"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="120035" i_stop="119817" i_length="219">
            <donor d_prob="0.959" d_score="1.00"/>
            <acceptor a_prob="0.980" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="119816" g_stop="119730" g_length="87"/>
          <reference_exon_boundary r_type="cDNA" r_start="115" r_stop="201" r_length="87" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="119729" i_stop="119087" i_length="643">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="119086" g_stop="118913" g_length="174"/>
          <reference_exon_boundary r_type="cDNA" r_start="202" r_stop="375" r_length="174" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="118912" i_stop="118834" i_length="79">
            <donor d_prob="0.933" d_score="1.00"/>
            <acceptor a_prob="0.857" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="118833" g_stop="118738" g_length="96"/>
          <reference_exon_boundary r_type="cDNA" r_start="376" r_stop="471" r_length="96" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0236E02.1" gen_strand="-" ref_id="SGN-E275091" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>471</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0236E02.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E275091" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="120149" e_stop="120036"/>
          <exon e_start="119816" e_stop="119730"/>
          <exon e_start="119086" e_stop="118913"/>
          <exon e_start="118833" e_stop="118738"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTAATGTTCGCCTGGAAAGTTGGCCCTGCACTTGCTTGTGGTAACACTGTCGTACTAAAACCAGCAGAACAAACACCACTCTCTGCCCTGTATGTGTCAAAGTTATTCCATGAGGTATATAACCATTTTTAGTCTGCACCGGTCGTGAATTCACAGAATTCTAATGAGTACTCATTTGTACTTGTCATTTAGTTATTTCTAGTATGTTGTTTACAAATTTAGTAGTTTCAAATATAGAAGTGGAAACTTTCCACAATTATTGCAGCTCAAATCGAAGATTTCTCCATCTATACAAGATGATAGAATGTAATTTGTCTTCACTCCAACTGTCAGGTTGGACTTCCCCCTGGAGTCTTAAATGTCATTCCTGGATCCGGTAGTGCAGGTGCAGATCTTGCCAGTCATATGGATGTCGATAAGGTATTTTCTGAGTTTTGGCTTTAGTTCCTGAATAGGAATTTACAGAAGAAATGGCTTATGTTTCTTCTGATAAACCTACACGACAAAGTCCAAGGCAGTTTCAGTATCAAATTTGAAATGTTGGATTGTATAAAGGAGTGTCAGAACACGGTATTTCAGTTTCAACATATCTCTAGGTAGCAATGAAGCTATCCGTCGCTAATTCTACCCCCTCTTCCATCCCAAAGAAGATTAAAAGAAGTAAATAGCCTAATTATAGTGTCTCATTAGATAGTATAATCCACATGTAGAAAATGAAGAAAATCATATCTTTTTCTTCCAGCTTCCCCATTAAAAGTCAATAAACAACATAAAGAGGTTATGCATCCTGATGTCCTTTCAGCTTTTGTATTTCATGCTTGCTTTTATTGATGCAGCTGTGATGTGTAAAGTTTTCTGAGTGAATACTCTGGAATAGATGAGGGAGACTGAAGGAGCACTGACATCTTCTACTACTTGTTTTCGTATAGATTTAAACAGCTTGGTCCTCGACATTACTTGCATCTTTTCCCCCTGTAAAATGTTTTTTTTTGGTGATTTTTTAATTTTTCTGTGATGTCTAAATTGCGATGTGTCTCTACATCACTCCTTTTGGTGTCTACAGATTGCTTTTACAGGGTCCACAGAAACTGGTAAAGCTGTCGTAGGTGCAGCTGCAAAGAGCAACCTAAAACCTGTGACATTGGAGCTCGGAGGAAAATCTCCTTTCATCATTTGTGAAGATGCAGACGTTGATAAAGCTGTTGAGTTGGCTCATTCTGCTGTTTTCTTTAACCAGGTAGCAAAAATTTCCACTCTTGGAAAATTGCAACCTCTGATGCTTGCTCCAGAATGGAATAAATTTCAAGTATCTGCAGGGACAATGCTGCTGTGCTGGATCTCGGACATTCGTACATGAAAGAGTATATGATGAATTTGTGGAGAAAGCCAAAGCTCGTGCTTTAAAACGCATT</genome_strand>
        <mrna_strand>TTAATGTTAGCTTGGAAAGTTGGCCCTGCACTTGCTTGTGGTAACACTGTCGTACTAAAACCAGCAGAACAAACACCACTCTCTGCCCTGTATGTGTCAAAGTTATTCCATGAG...........................................................................................................................................................................................................................GTTGGACTTCCCCCTGGAGTCTTAAATGTCATTCCTGGATCCGGTAGTGCAGGTGCAGATCTTGCCAGTCATATGGATGTCGATAAG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTGCTTTTACAGGGTCCACAGAAACTGGTAAAGCTGTCGTAGGTGCAGCTGCAAAGAGCAACCTAAAACCTGTGACATTGGAGCTCGGAGGAAAATCTCCTTTCATCATTTGTGAAGATGCAGACGTTGATAAAGCTGTTGAGTTGGCTCATTCTGCTGTTTTCTTTAACCAG...............................................................................GGACAATGCTGCTGTGCTGGATCTCGGACATTCGTACATGAAAGAGTATATGATGAATTTGTGGAGAAAGCCAAAGCTCGTGCTTTAAAACGCATT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0236E02-u8qcS/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E370665" ref_strand="+" ref_description="SGN-E370665 [TUS-27-M20]">
      <seq>ttgcagtttgctgatttgcttgagaggcacagtgatgaacttgcagcacttgagacttgggataagggaaagccttacgaacaagctgcaaatgaagaaataccaatgctcattcgtcttttcagatactatgctggttaagaaaataagaaaaatggcgttatgtttccttttgacagtttaataaccacttattgtatatcaattgacgttctaatgtttgctgaatcaccctaaatgcttttctaagtatttctgcttacatttcttattcaggttgggctgataaaattcatggtcttacagctcctgctgacagtttgcaccatgttcagaccctgcatgagccaattggtgttgcaggacagataataccctggaattttccgttattaatgttcgcctggaaagttggccctgcacttgcttgtggtaacactgtcgtactaaaaccagcagaacaaacaccactctctgccctgtatgtgtcaaagttattccatgaggttggacttccccctggagtcttaaatgtcattcctggatccggtagtgcaggtgcagatcttgccagtcatatggatgtcgataagattgcttttacagggtccacagaaactggtaaagctgtcgtaggtgcagctgcaaagagcaacctaaacctgtgacattnggagctcgaggaaaatctccttcatcatttgtgagatgcagacgttgataaagctgttgagt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0236E02-u8qcS/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0236E02.1" temp_strand="-" temp_description="C02HBa0236E02.1  AC215430.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0236E02 sequenced_by:kribb upload_account_name:korea">
        <position start="120841" stop="118642"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="120541" g_stop="120036" g_length="506"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="506" r_length="506" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="120035" i_stop="119817" i_length="219">
            <donor d_prob="0.959" d_score="1.00"/>
            <acceptor a_prob="0.980" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="119816" g_stop="119730" g_length="87"/>
          <reference_exon_boundary r_type="cDNA" r_start="507" r_stop="593" r_length="87" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="119729" i_stop="119087" i_length="643">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="119086" g_stop="118942" g_length="145"/>
          <reference_exon_boundary r_type="cDNA" r_start="594" r_stop="735" r_length="142" r_score="0.959"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0236E02.1" gen_strand="-" ref_id="SGN-E370665" ref_strand="+">
        <total_alignment_score>0.992</total_alignment_score>
        <cumulative_length_of_scored_exons>738</cumulative_length_of_scored_exons>
        <coverage percentage="1.004" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0236E02.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E370665" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="120541" e_stop="120036"/>
          <exon e_start="119816" e_stop="119730"/>
          <exon e_start="119086" e_stop="118942"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTGCAGTTTGCTGATTTGCTTGAGAGGCACAGTGATGAACTTGCAGCACTTGAGACTTGGGATAAGGGAAAGCCTTACGAACAAGCTGCAAATGAAGAAATACCAATGCTCATTCGTCTTTTCAGATACTATGCTGGTTAAGAAAATAAGAAAAATGGCGTTATGTTTCCTTTTGACAGTTTAATAACCACTTATTGTATATCAATTGACGTTCTAATGTTTGCTGAATCACCCTAAATGCTTTTCTAAGTATTTCTGCTTACATTTCTTATTCAGGTTGGGCTGATAAAATTCATGGTCTTACAGCTCCTGCTGACAGTTTGCACCATGTTCAGACCCTGCATGAGCCAATTGGTGTTGCAGGACAGATAATACCCTGGAATTTTCCGTTATTAATGTTCGCCTGGAAAGTTGGCCCTGCACTTGCTTGTGGTAACACTGTCGTACTAAAACCAGCAGAACAAACACCACTCTCTGCCCTGTATGTGTCAAAGTTATTCCATGAGGTATATAACCATTTTTAGTCTGCACCGGTCGTGAATTCACAGAATTCTAATGAGTACTCATTTGTACTTGTCATTTAGTTATTTCTAGTATGTTGTTTACAAATTTAGTAGTTTCAAATATAGAAGTGGAAACTTTCCACAATTATTGCAGCTCAAATCGAAGATTTCTCCATCTATACAAGATGATAGAATGTAATTTGTCTTCACTCCAACTGTCAGGTTGGACTTCCCCCTGGAGTCTTAAATGTCATTCCTGGATCCGGTAGTGCAGGTGCAGATCTTGCCAGTCATATGGATGTCGATAAGGTATTTTCTGAGTTTTGGCTTTAGTTCCTGAATAGGAATTTACAGAAGAAATGGCTTATGTTTCTTCTGATAAACCTACACGACAAAGTCCAAGGCAGTTTCAGTATCAAATTTGAAATGTTGGATTGTATAAAGGAGTGTCAGAACACGGTATTTCAGTTTCAACATATCTCTAGGTAGCAATGAAGCTATCCGTCGCTAATTCTACCCCCTCTTCCATCCCAAAGAAGATTAAAAGAAGTAAATAGCCTAATTATAGTGTCTCATTAGATAGTATAATCCACATGTAGAAAATGAAGAAAATCATATCTTTTTCTTCCAGCTTCCCCATTAAAAGTCAATAAACAACATAAAGAGGTTATGCATCCTGATGTCCTTTCAGCTTTTGTATTTCATGCTTGCTTTTATTGATGCAGCTGTGATGTGTAAAGTTTTCTGAGTGAATACTCTGGAATAGATGAGGGAGACTGAAGGAGCACTGACATCTTCTACTACTTGTTTTCGTATAGATTTAAACAGCTTGGTCCTCGACATTACTTGCATCTTTTCCCCCTGTAAAATGTTTTTTTTTGGTGATTTTTTAATTTTTCTGTGATGTCTAAATTGCGATGTGTCTCTACATCACTCCTTTTGGTGTCTACAGATTGCTTTTACAGGGTCCACAGAAACTGGTAAAGCTGTCGTAGGTGCAGCTGCAAAGAGCAACCTAAAACCTGTGACATT-GGAGCTCGGAGGAAAATCTCCTTTCATCATTTGTGAAGATGCAGACGTTGATAAAGCTGTTGAGT</genome_strand>
        <mrna_strand>TTGCAGTTTGCTGATTTGCTTGAGAGGCACAGTGATGAACTTGCAGCACTTGAGACTTGGGATAAGGGAAAGCCTTACGAACAAGCTGCAAATGAAGAAATACCAATGCTCATTCGTCTTTTCAGATACTATGCTGGTTAAGAAAATAAGAAAAATGGCGTTATGTTTCCTTTTGACAGTTTAATAACCACTTATTGTATATCAATTGACGTTCTAATGTTTGCTGAATCACCCTAAATGCTTTTCTAAGTATTTCTGCTTACATTTCTTATTCAGGTTGGGCTGATAAAATTCATGGTCTTACAGCTCCTGCTGACAGTTTGCACCATGTTCAGACCCTGCATGAGCCAATTGGTGTTGCAGGACAGATAATACCCTGGAATTTTCCGTTATTAATGTTCGCCTGGAAAGTTGGCCCTGCACTTGCTTGTGGTAACACTGTCGTACTAAAACCAGCAGAACAAACACCACTCTCTGCCCTGTATGTGTCAAAGTTATTCCATGAG...........................................................................................................................................................................................................................GTTGGACTTCCCCCTGGAGTCTTAAATGTCATTCCTGGATCCGGTAGTGCAGGTGCAGATCTTGCCAGTCATATGGATGTCGATAAG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTGCTTTTACAGGGTCCACAGAAACTGGTAAAGCTGTCGTAGGTGCAGCTGCAAAGAGCAACCT-AAACCTGTGACATTNGGAGCTC-GAGGAAAATCTCC-TTCATCATTTGTG-AGATGCAGACGTTGATAAAGCTGTTGAGT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0236E02-u8qcS/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E211596" ref_strand="+" ref_description="SGN-E211596 [cLEC-67-E18]">
      <seq>ccaaggcagtttcagtatcaaatttgaaatgttggattgtataaaggagtgtcagaacacggtatttcagtttcaacatatctctaggtagcaatgaagctatccgtcgctaattctaccccctcttccatcccaaagaagattaaaagaagtaaatagcctaattatagtgtctcattagatagtataatccacatgtagaaaatgaagaaaatcatatctttttcttccagcttccccattaaaagtcaataaacaacataaagaggttatgcatcctgatgtcctttcagcttttgtatttcatgcttgcttttattgatgcagctgtgatgtgtaaagttttctgagtgaatactctggaatagatgagggagactgaaggagcactgacatcttctactacttgttttcgtatagatttaaacagcttggtcctcgacattacttgcatcttttccccctgtaaaatgtttttttttggtgattttttaatttttctgtgatgtctaaattgcgatgtgtctctacatcactccttttggtgtctacagattgcttttacagggtccacagaaactggtaaagctgtcgtaggtgcagctgcaaagagcaacctaaaacctgtgacattggagctcggaggaaaatctcctttcatcattt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0236E02-u8qcS/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0236E02.1" temp_strand="-" temp_description="C02HBa0236E02.1  AC215430.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0236E02 sequenced_by:kribb upload_account_name:korea">
        <position start="119940" stop="118675"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="119640" g_stop="118975" g_length="666"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="666" r_length="666" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0236E02.1" gen_strand="-" ref_id="SGN-E211596" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>666</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0236E02.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E211596" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="119640" e_stop="118975"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCAAGGCAGTTTCAGTATCAAATTTGAAATGTTGGATTGTATAAAGGAGTGTCAGAACACGGTATTTCAGTTTCAACATATCTCTAGGTAGCAATGAAGCTATCCGTCGCTAATTCTACCCCCTCTTCCATCCCAAAGAAGATTAAAAGAAGTAAATAGCCTAATTATAGTGTCTCATTAGATAGTATAATCCACATGTAGAAAATGAAGAAAATCATATCTTTTTCTTCCAGCTTCCCCATTAAAAGTCAATAAACAACATAAAGAGGTTATGCATCCTGATGTCCTTTCAGCTTTTGTATTTCATGCTTGCTTTTATTGATGCAGCTGTGATGTGTAAAGTTTTCTGAGTGAATACTCTGGAATAGATGAGGGAGACTGAAGGAGCACTGACATCTTCTACTACTTGTTTTCGTATAGATTTAAACAGCTTGGTCCTCGACATTACTTGCATCTTTTCCCCCTGTAAAATGTTTTTTTTTGGTGATTTTTTAATTTTTCTGTGATGTCTAAATTGCGATGTGTCTCTACATCACTCCTTTTGGTGTCTACAGATTGCTTTTACAGGGTCCACAGAAACTGGTAAAGCTGTCGTAGGTGCAGCTGCAAAGAGCAACCTAAAACCTGTGACATTGGAGCTCGGAGGAAAATCTCCTTTCATCATTT</genome_strand>
        <mrna_strand>CCAAGGCAGTTTCAGTATCAAATTTGAAATGTTGGATTGTATAAAGGAGTGTCAGAACACGGTATTTCAGTTTCAACATATCTCTAGGTAGCAATGAAGCTATCCGTCGCTAATTCTACCCCCTCTTCCATCCCAAAGAAGATTAAAAGAAGTAAATAGCCTAATTATAGTGTCTCATTAGATAGTATAATCCACATGTAGAAAATGAAGAAAATCATATCTTTTTCTTCCAGCTTCCCCATTAAAAGTCAATAAACAACATAAAGAGGTTATGCATCCTGATGTCCTTTCAGCTTTTGTATTTCATGCTTGCTTTTATTGATGCAGCTGTGATGTGTAAAGTTTTCTGAGTGAATACTCTGGAATAGATGAGGGAGACTGAAGGAGCACTGACATCTTCTACTACTTGTTTTCGTATAGATTTAAACAGCTTGGTCCTCGACATTACTTGCATCTTTTCCCCCTGTAAAATGTTTTTTTTTGGTGATTTTTTAATTTTTCTGTGATGTCTAAATTGCGATGTGTCTCTACATCACTCCTTTTGGTGTCTACAGATTGCTTTTACAGGGTCCACAGAAACTGGTAAAGCTGTCGTAGGTGCAGCTGCAAAGAGCAACCTAAAACCTGTGACATTGGAGCTCGGAGGAAAATCTCCTTTCATCATTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0236E02-u8qcS/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E245989" ref_strand="+" ref_description="SGN-E245989 [cLEF-54-E10]">
      <seq>aaaggtcatgtataatgttgcagtttgctgatttgcttgagaggcacgagtgatgaacttgcagcacttgagacttgggataagggaaagccttacgaacaagctgcaaatgaagaaataccaatgctcattcgtcttttcagatactatgctggttaagaaaataagaaaaatggcgttgggctgataaaattcatggtcttacagctcctgctgacagtttgcaccatgttcagaccctgcatgagccaattggtgttgcaggacagataataccctggaattttccgttattaatgttcgcctggaaagttggccctgcacttgcttgtggtaacactgtcgtactaaaaccagcagaacaaacaccactctctgccctgtatgtgtcaaagttattccatgaggttggacttccccctggagtcttaaatgtcattcctggatccggtagtgcaggtgcagatcttgccagtcatatggatgtcgataagattgcttttacagggtccacagaaactggtaaagctgtcgtatgtgcagctgcaaagagcaacctaaaacctgtgacattggagctc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0236E02-u8qcS/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0236E02.1" temp_strand="-" temp_description="C02HBa0236E02.1  AC215430.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0236E02 sequenced_by:kribb upload_account_name:korea">
        <position start="120858" stop="118700"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="120558" g_stop="120383" g_length="176"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="177" r_length="177" r_score="0.989"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="120382" i_stop="120266" i_length="117">
            <donor d_prob="0.000" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="120265" g_stop="120036" g_length="230"/>
          <reference_exon_boundary r_type="cDNA" r_start="178" r_stop="407" r_length="230" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="120035" i_stop="119817" i_length="219">
            <donor d_prob="0.959" d_score="1.00"/>
            <acceptor a_prob="0.980" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="119816" g_stop="119730" g_length="87"/>
          <reference_exon_boundary r_type="cDNA" r_start="408" r_stop="494" r_length="87" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="119729" i_stop="119087" i_length="643">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="119086" g_stop="119000" g_length="87"/>
          <reference_exon_boundary r_type="cDNA" r_start="495" r_stop="581" r_length="87" r_score="0.989"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0236E02.1" gen_strand="-" ref_id="SGN-E245989" ref_strand="+">
        <total_alignment_score>0.995</total_alignment_score>
        <cumulative_length_of_scored_exons>580</cumulative_length_of_scored_exons>
        <coverage percentage="0.998" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0236E02.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E245989" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="120558" e_stop="120383"/>
          <exon e_start="120265" e_stop="120036"/>
          <exon e_start="119816" e_stop="119730"/>
          <exon e_start="119086" e_stop="119000"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAGGTCATGTATAATGTTGCAGTTTGCTGATTTGCTTGAGAGGCAC-AGTGATGAACTTGCAGCACTTGAGACTTGGGATAAGGGAAAGCCTTACGAACAAGCTGCAAATGAAGAAATACCAATGCTCATTCGTCTTTTCAGATACTATGCTGGTTAAGAAAATAAGAAAAATGGCGTTATGTTTCCTTTTGACAGTTTAATAACCACTTATTGTATATCAATTGACGTTCTAATGTTTGCTGAATCACCCTAAATGCTTTTCTAAGTATTTCTGCTTACATTTCTTATTCAGGTTGGGCTGATAAAATTCATGGTCTTACAGCTCCTGCTGACAGTTTGCACCATGTTCAGACCCTGCATGAGCCAATTGGTGTTGCAGGACAGATAATACCCTGGAATTTTCCGTTATTAATGTTCGCCTGGAAAGTTGGCCCTGCACTTGCTTGTGGTAACACTGTCGTACTAAAACCAGCAGAACAAACACCACTCTCTGCCCTGTATGTGTCAAAGTTATTCCATGAGGTATATAACCATTTTTAGTCTGCACCGGTCGTGAATTCACAGAATTCTAATGAGTACTCATTTGTACTTGTCATTTAGTTATTTCTAGTATGTTGTTTACAAATTTAGTAGTTTCAAATATAGAAGTGGAAACTTTCCACAATTATTGCAGCTCAAATCGAAGATTTCTCCATCTATACAAGATGATAGAATGTAATTTGTCTTCACTCCAACTGTCAGGTTGGACTTCCCCCTGGAGTCTTAAATGTCATTCCTGGATCCGGTAGTGCAGGTGCAGATCTTGCCAGTCATATGGATGTCGATAAGGTATTTTCTGAGTTTTGGCTTTAGTTCCTGAATAGGAATTTACAGAAGAAATGGCTTATGTTTCTTCTGATAAACCTACACGACAAAGTCCAAGGCAGTTTCAGTATCAAATTTGAAATGTTGGATTGTATAAAGGAGTGTCAGAACACGGTATTTCAGTTTCAACATATCTCTAGGTAGCAATGAAGCTATCCGTCGCTAATTCTACCCCCTCTTCCATCCCAAAGAAGATTAAAAGAAGTAAATAGCCTAATTATAGTGTCTCATTAGATAGTATAATCCACATGTAGAAAATGAAGAAAATCATATCTTTTTCTTCCAGCTTCCCCATTAAAAGTCAATAAACAACATAAAGAGGTTATGCATCCTGATGTCCTTTCAGCTTTTGTATTTCATGCTTGCTTTTATTGATGCAGCTGTGATGTGTAAAGTTTTCTGAGTGAATACTCTGGAATAGATGAGGGAGACTGAAGGAGCACTGACATCTTCTACTACTTGTTTTCGTATAGATTTAAACAGCTTGGTCCTCGACATTACTTGCATCTTTTCCCCCTGTAAAATGTTTTTTTTTGGTGATTTTTTAATTTTTCTGTGATGTCTAAATTGCGATGTGTCTCTACATCACTCCTTTTGGTGTCTACAGATTGCTTTTACAGGGTCCACAGAAACTGGTAAAGCTGTCGTAGGTGCAGCTGCAAAGAGCAACCTAAAACCTGTGACATTGGAGCTC</genome_strand>
        <mrna_strand>AAAGGTCATGTATAATGTTGCAGTTTGCTGATTTGCTTGAGAGGCACGAGTGATGAACTTGCAGCACTTGAGACTTGGGATAAGGGAAAGCCTTACGAACAAGCTGCAAATGAAGAAATACCAATGCTCATTCGTCTTTTCAGATACTATGCTGGTTAAGAAAATAAGAAAAATGGC.....................................................................................................................GTTGGGCTGATAAAATTCATGGTCTTACAGCTCCTGCTGACAGTTTGCACCATGTTCAGACCCTGCATGAGCCAATTGGTGTTGCAGGACAGATAATACCCTGGAATTTTCCGTTATTAATGTTCGCCTGGAAAGTTGGCCCTGCACTTGCTTGTGGTAACACTGTCGTACTAAAACCAGCAGAACAAACACCACTCTCTGCCCTGTATGTGTCAAAGTTATTCCATGAG...........................................................................................................................................................................................................................GTTGGACTTCCCCCTGGAGTCTTAAATGTCATTCCTGGATCCGGTAGTGCAGGTGCAGATCTTGCCAGTCATATGGATGTCGATAAG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTGCTTTTACAGGGTCCACAGAAACTGGTAAAGCTGTCGTATGTGCAGCTGCAAAGAGCAACCTAAAACCTGTGACATTGGAGCTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0236E02-u8qcS/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E550826" ref_strand="+" ref_description="SGN-E550826 [TUS-50-O16]">
      <seq>tcaaatttgaaatgttggattgtataaaggagtgtcagaacacggtatttcagtttcaacatatctctaggtagcaatgaagctatccgtcgctaattctaccccctcttccatcccaaagaagattaaaagaagtaaatagcctaattatagtgtctcattagatagtataatccacatgtagaaaatgaagaaaatcatatctttttcttccagcttccccattaaaagtcaataaacaacataaagaggttatgcatcctgatgtcctttcagcttttgtatttcatgcttgcttttattgatgcagctgtgatgtgtaaagttttctgagtgaatactctggaatagatgagggagactgaaggagcactgacatcttctactacttgttttcgtatagatttaaacagcttggtcctcgacattacttgcatcttttccccctgtaaaatgtttttttttggtgattttttaatttttctgtgatgtctaaattgcgatgtgtctctacatcactccttttggtgtctacagattgcttttacagggtccacagaaactggtaaagctgt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0236E02-u8qcS/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0236E02.1" temp_strand="-" temp_description="C02HBa0236E02.1  AC215430.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0236E02 sequenced_by:kribb upload_account_name:korea">
        <position start="119923" stop="118749"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="119623" g_stop="119049" g_length="575"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="575" r_length="575" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0236E02.1" gen_strand="-" ref_id="SGN-E550826" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>575</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0236E02.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E550826" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="119623" e_stop="119049"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCAAATTTGAAATGTTGGATTGTATAAAGGAGTGTCAGAACACGGTATTTCAGTTTCAACATATCTCTAGGTAGCAATGAAGCTATCCGTCGCTAATTCTACCCCCTCTTCCATCCCAAAGAAGATTAAAAGAAGTAAATAGCCTAATTATAGTGTCTCATTAGATAGTATAATCCACATGTAGAAAATGAAGAAAATCATATCTTTTTCTTCCAGCTTCCCCATTAAAAGTCAATAAACAACATAAAGAGGTTATGCATCCTGATGTCCTTTCAGCTTTTGTATTTCATGCTTGCTTTTATTGATGCAGCTGTGATGTGTAAAGTTTTCTGAGTGAATACTCTGGAATAGATGAGGGAGACTGAAGGAGCACTGACATCTTCTACTACTTGTTTTCGTATAGATTTAAACAGCTTGGTCCTCGACATTACTTGCATCTTTTCCCCCTGTAAAATGTTTTTTTTTGGTGATTTTTTAATTTTTCTGTGATGTCTAAATTGCGATGTGTCTCTACATCACTCCTTTTGGTGTCTACAGATTGCTTTTACAGGGTCCACAGAAACTGGTAAAGCTGT</genome_strand>
        <mrna_strand>TCAAATTTGAAATGTTGGATTGTATAAAGGAGTGTCAGAACACGGTATTTCAGTTTCAACATATCTCTAGGTAGCAATGAAGCTATCCGTCGCTAATTCTACCCCCTCTTCCATCCCAAAGAAGATTAAAAGAAGTAAATAGCCTAATTATAGTGTCTCATTAGATAGTATAATCCACATGTAGAAAATGAAGAAAATCATATCTTTTTCTTCCAGCTTCCCCATTAAAAGTCAATAAACAACATAAAGAGGTTATGCATCCTGATGTCCTTTCAGCTTTTGTATTTCATGCTTGCTTTTATTGATGCAGCTGTGATGTGTAAAGTTTTCTGAGTGAATACTCTGGAATAGATGAGGGAGACTGAAGGAGCACTGACATCTTCTACTACTTGTTTTCGTATAGATTTAAACAGCTTGGTCCTCGACATTACTTGCATCTTTTCCCCCTGTAAAATGTTTTTTTTTGGTGATTTTTTAATTTTTCTGTGATGTCTAAATTGCGATGTGTCTCTACATCACTCCTTTTGGTGTCTACAGATTGCTTTTACAGGGTCCACAGAAACTGGTAAAGCTGT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0236E02-u8qcS/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E688547" ref_strand="+" ref_description="SGN-E688547 [t3_tus_50_o16]">
      <seq>tcaaatttgaaatgttggattgtataaaggagtgtcagaacacggtatttcagtttcaacatatctctaggtagcaatgaagctatccgtcgctaattctaccccctcttccatcccaaagaagattaaaagaagtaaatagcctaattatagtgtctcattagatagtataatccacatgtagaaaatgaagaaaatcatatctttttcttccagcttccccattaaaagtcaataaacaacataaagaggttatgcatcctgatgtcctttcagcttttgtatttcatgcttgcttttattgatgcagctgtgatgtgtaaagttttctgagtgaatactctggaatagatgagggagactgaaggagcactgacatcttctactacttgttttcgtatagatttaaacagcttggtcctcgacattacttgcatcttttccccctgtaaaatgtttttttttggtgattttttaatttttctgtgatgtctaaattgcgatgtgtctctacatcactccttttggtgtctacagattgcttttacagggtccacagaaactggtaaagctgt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0236E02-u8qcS/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0236E02.1" temp_strand="-" temp_description="C02HBa0236E02.1  AC215430.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0236E02 sequenced_by:kribb upload_account_name:korea">
        <position start="119923" stop="118749"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="119623" g_stop="119049" g_length="575"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="575" r_length="575" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0236E02.1" gen_strand="-" ref_id="SGN-E688547" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>575</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0236E02.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E688547" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="119623" e_stop="119049"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCAAATTTGAAATGTTGGATTGTATAAAGGAGTGTCAGAACACGGTATTTCAGTTTCAACATATCTCTAGGTAGCAATGAAGCTATCCGTCGCTAATTCTACCCCCTCTTCCATCCCAAAGAAGATTAAAAGAAGTAAATAGCCTAATTATAGTGTCTCATTAGATAGTATAATCCACATGTAGAAAATGAAGAAAATCATATCTTTTTCTTCCAGCTTCCCCATTAAAAGTCAATAAACAACATAAAGAGGTTATGCATCCTGATGTCCTTTCAGCTTTTGTATTTCATGCTTGCTTTTATTGATGCAGCTGTGATGTGTAAAGTTTTCTGAGTGAATACTCTGGAATAGATGAGGGAGACTGAAGGAGCACTGACATCTTCTACTACTTGTTTTCGTATAGATTTAAACAGCTTGGTCCTCGACATTACTTGCATCTTTTCCCCCTGTAAAATGTTTTTTTTTGGTGATTTTTTAATTTTTCTGTGATGTCTAAATTGCGATGTGTCTCTACATCACTCCTTTTGGTGTCTACAGATTGCTTTTACAGGGTCCACAGAAACTGGTAAAGCTGT</genome_strand>
        <mrna_strand>TCAAATTTGAAATGTTGGATTGTATAAAGGAGTGTCAGAACACGGTATTTCAGTTTCAACATATCTCTAGGTAGCAATGAAGCTATCCGTCGCTAATTCTACCCCCTCTTCCATCCCAAAGAAGATTAAAAGAAGTAAATAGCCTAATTATAGTGTCTCATTAGATAGTATAATCCACATGTAGAAAATGAAGAAAATCATATCTTTTTCTTCCAGCTTCCCCATTAAAAGTCAATAAACAACATAAAGAGGTTATGCATCCTGATGTCCTTTCAGCTTTTGTATTTCATGCTTGCTTTTATTGATGCAGCTGTGATGTGTAAAGTTTTCTGAGTGAATACTCTGGAATAGATGAGGGAGACTGAAGGAGCACTGACATCTTCTACTACTTGTTTTCGTATAGATTTAAACAGCTTGGTCCTCGACATTACTTGCATCTTTTCCCCCTGTAAAATGTTTTTTTTTGGTGATTTTTTAATTTTTCTGTGATGTCTAAATTGCGATGTGTCTCTACATCACTCCTTTTGGTGTCTACAGATTGCTTTTACAGGGTCCACAGAAACTGGTAAAGCTGT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0236E02-u8qcS/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E542979" ref_strand="+" ref_description="SGN-E542979 [TUS-64-I23]">
      <seq>acattatgctttgtatgaaataaaggtcctctaagatttctgtaagcaactttgaaaatttctttaggtactccaactactggagaaagggtatcagaaggttttgtagcagtgccgtggtgcatgaagagccaatcactccacctgttgaggttaaatataatcagcttctcattaatggacagtttgttgatgcagcctcagggaagacatttcctacatttgaccctcgaacaggcgaagctattactacggttgcggaggccgacactgaagatgtcaaccgtgcagtctttgctgcccgtaaagcatttgatgaaggaccatggcctaaaatgacttgtgcagaaaggtcatgtataatgttgcagtttgctgatttgcttgagaggcacagtgatgaacttgcagcacttgagacttgggataagggaaagccttacgaacaagctgcaaatgaagaaataccaatgctcattcgtcttttcagatactatgctggttgggctgataaaattcatggtcttacagctcctgctgacagtttgcaccatgttcagaccctgcatgagccaattggtgttgcaggacagataataccctggaattttccgttattaatgttcgcctggaaagttggccctgcacttgcttgtggtaacactgtcgtactaaaaccagcagaacaaacaccactctctgccctgtatgtgtcaaagttattccatgaggttggacttccccctggagtcttaaatgtcattcctggatccggtagtgcaggtgcagatcttgccagtcatatggatgtcg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0236E02-u8qcS/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0236E02.1" temp_strand="-" temp_description="C02HBa0236E02.1  AC215430.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0236E02 sequenced_by:kribb upload_account_name:korea">
        <position start="123414" stop="119435"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="123114" g_stop="123052" g_length="63"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="63" r_length="63" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="123051" i_stop="121370" i_length="1682">
            <donor d_prob="0.000" d_score="1.00"/>
            <acceptor a_prob="0.901" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="121369" g_stop="121229" g_length="141"/>
          <reference_exon_boundary r_type="cDNA" r_start="64" r_stop="204" r_length="141" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="121228" i_stop="121150" i_length="79">
            <donor d_prob="0.986" d_score="1.00"/>
            <acceptor a_prob="0.750" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="121149" g_stop="121007" g_length="143"/>
          <reference_exon_boundary r_type="cDNA" r_start="205" r_stop="347" r_length="143" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="121006" i_stop="120560" i_length="447">
            <donor d_prob="0.793" d_score="1.00"/>
            <acceptor a_prob="0.922" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="120559" g_stop="120406" g_length="154"/>
          <reference_exon_boundary r_type="cDNA" r_start="348" r_stop="501" r_length="154" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="120405" i_stop="120266" i_length="140">
            <donor d_prob="0.000" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="120265" g_stop="120036" g_length="230"/>
          <reference_exon_boundary r_type="cDNA" r_start="502" r_stop="731" r_length="230" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="120035" i_stop="119817" i_length="219">
            <donor d_prob="0.959" d_score="1.00"/>
            <acceptor a_prob="0.980" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="119816" g_stop="119735" g_length="82"/>
          <reference_exon_boundary r_type="cDNA" r_start="732" r_stop="813" r_length="82" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0236E02.1" gen_strand="-" ref_id="SGN-E542979" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>813</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0236E02.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E542979" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="123114" e_stop="123052"/>
          <exon e_start="121369" e_stop="121229"/>
          <exon e_start="121149" e_stop="121007"/>
          <exon e_start="120559" e_stop="120406"/>
          <exon e_start="120265" e_stop="120036"/>
          <exon e_start="119816" e_stop="119735"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACATTATGCTTTGTATGAAATAAAGGTCCTCTAAGATTTCTGTAAGCAACTTTGAAAATTTCTGTAAGTTCTTCTTTATTTAAATTCCGCAACTATGAAAATGGTAAGGAAAGAGTATGATTGTAGCTTCTCTTGTTCACTGATGACATGACAGTGTGAATAATTTTGATCAACTATGATTTAATCAGTTAAAAGTAATCTATTTATCTTATTTTTGAAATGACTAGTTTGGCTTTAGATGGTACTATAAAGTAGACCTCATTATTTTAGGTTACGCAGAGTGTTTACTTGATTGTCTAAACAAAATTTAGAAATAAATTTTGAACCTAAGCTAAACACAGAGTTAAAGGGTTTCATTTAATCATTAAATTTGTCCTCCGTTATAGTTCTTTTAAGGGAAAGCTCCGAATCAACCCATTTTATCCAAAAATGAAAAGATAAAACCACCCGCCCCTAATATAACCCGCATCCGACCAACTAACATGTAAAACCCACCCAAGTCCAAAGAAAGCAAAACTAACCCTTTAACGGCGGCGGCGGCGGCAGCGACGGCGCAACTTTTTTCCATGAGTTGATTTCCAAGAAAATGGAAATAACTTTGCCCGCATTGGATCTAACTAACAACTTATTGTTCTACCCAAGTCCAAGAAATCAAAAACAAACCCATATAATGGTAGCGTGGCGGCGGCGCGTCTTCTTCAATGGTTTCCAGGAGAAGGGGAAATAACTTTACCCACATCCGACCCAACTAACAAGTAAACCATCTTTCCCGTTATAGTTCTACCCAGGTCCAAGAAGGCAAATACAAACCCCTCTGGGCGTGGCAGCGGCGCATCTTCTTCCATGTCTTCCAAGAAAAGGGAAAATAACTTTGCCTTTTCCCATCTTCTACAGTTCCCTTAATTTTGCATTTTTTTAGAATCTAACTCAACAGTCCCTTTATGGACTTCATCACTTCTAACCAAACACAAATCCAACTAAGAAGAGATAAAACTCAATAAAATGAATAGCGTCCCAGAGGAAAATCTCAACACCTGAGTAGACATAAAAAAGAATCAACTTAGCAGTTAAATAAAATATCACATCATCAACAGCAGAAGTTGCCGCCTGAATCGCCACGAACCCAACCACAAAAGCAGAGACAAATTTCCCTTGCTGAAAGAATCAGCCCAAATCCACTACATTCTTGTACTGCAATTCCAATTACACTTGCCTCGAAATTGCCGCAAATACAGTAACTTGGTGACTTTTGAGGAAGATGGAAAAATTGATTCTTTTCTATTGGGTGGACAAACTCACCAAGAGTAATTAAAAATAAATATGGTCTGTTTTGAGGTTGAAGTTTAATTCAGGTGACATAGTACTTTGCTGGGTTTTGAGGAAACTGGAACAGTATTTGTTTTTTAATCATAATGTTGAGTTTATTTAATTTGGTTCGGATTTTAATTTGATGGGTTTGCGGTCGGATTCATTCTAACCAATAAAAGAATGTTGATGGTTATTTTATCTCCAATAACTATATTGCAAGTACTTGTAAACCAAAAATACATTCACAGATTATAATTAAAGTAGTCTTTTTCTAATCAGAAGAATTATTTTCACCCGTGTTTTCTTTCTTTGGTATCTTGATGATTGAACAAGCTAACTGTGTCTTGATATTACCCCACTTGATTTGTTTGATATTTTAACTGATTTTCTTGAGAAAGGAGCTAGCTAATTATAGGTTCTGCAATTTCAATCTACAGTTAGGTACTCCAACTACTGGAGAAAGGGTATCAGAAGGTTTTGTAGCAGTGCCGTGGTGCATGAAGAGCCAATCACTCCACCTGTTGAGGTTAAATATAATCAGCTTCTCATTAATGGACAGTTTGTTGATGCAGCCTCAGGTTGACCTAAAGTCTTTTCATTTATATGTTATTTCTTCTATAAATCTCAAGTGTAATATGGAGAATTCTACGTCTTCAGGGAAGACATTTCCTACATTTGACCCTCGAACAGGCGAAGCTATTACTACGGTTGCGGAGGCCGACACTGAAGATGTCAACCGTGCAGTCTTTGCTGCCCGTAAAGCATTTGATGAAGGACCATGGCCTAAAATGACTTGTGCAGTAACCGAACTTTCTTATCTTTCCATATCCTCTTCCTTGTCCCAACAGTGAGAGGCGGATTTAGAATTTGAACTTAACATGTTCAACCTTTAAGGTTCTTATCGCTGAACACATTGATCTATCGGACATACGTGTTTAGATTTTAATATTCTCTCATTTTAGTACTTTCACATATATATTTATTTCCTGTATTATATGGTCCCTCTACCGAAGTTAATTTCTCAGTTGGTCGTTCAACTAATAGTAATTATTTGAGTAATATAAGTCACTTTCTTTGTTGAAGAAAATTGGAATCAAGTTGAAAAATGACTTCTTGAGATAATAACTATTTAGCAAAGTGACCATATGAGAAATCAATCCGCCTCTGCAGACAACTACAGCTTGTTTAAACTCCCAGTCTTACTTAAGCATGTACAATAATGTACTTACTTAACCAAATATTTCCAGGAAAGGTCATGTATAATGTTGCAGTTTGCTGATTTGCTTGAGAGGCACAGTGATGAACTTGCAGCACTTGAGACTTGGGATAAGGGAAAGCCTTACGAACAAGCTGCAAATGAAGAAATACCAATGCTCATTCGTCTTTTCAGATACTATGCTGGTTAAGAAAATAAGAAAAATGGCGTTATGTTTCCTTTTGACAGTTTAATAACCACTTATTGTATATCAATTGACGTTCTAATGTTTGCTGAATCACCCTAAATGCTTTTCTAAGTATTTCTGCTTACATTTCTTATTCAGGTTGGGCTGATAAAATTCATGGTCTTACAGCTCCTGCTGACAGTTTGCACCATGTTCAGACCCTGCATGAGCCAATTGGTGTTGCAGGACAGATAATACCCTGGAATTTTCCGTTATTAATGTTCGCCTGGAAAGTTGGCCCTGCACTTGCTTGTGGTAACACTGTCGTACTAAAACCAGCAGAACAAACACCACTCTCTGCCCTGTATGTGTCAAAGTTATTCCATGAGGTATATAACCATTTTTAGTCTGCACCGGTCGTGAATTCACAGAATTCTAATGAGTACTCATTTGTACTTGTCATTTAGTTATTTCTAGTATGTTGTTTACAAATTTAGTAGTTTCAAATATAGAAGTGGAAACTTTCCACAATTATTGCAGCTCAAATCGAAGATTTCTCCATCTATACAAGATGATAGAATGTAATTTGTCTTCACTCCAACTGTCAGGTTGGACTTCCCCCTGGAGTCTTAAATGTCATTCCTGGATCCGGTAGTGCAGGTGCAGATCTTGCCAGTCATATGGATGTCG</genome_strand>
        <mrna_strand>ACATTATGCTTTGTATGAAATAAAGGTCCTCTAAGATTTCTGTAAGCAACTTTGAAAATTTCT..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTAGGTACTCCAACTACTGGAGAAAGGGTATCAGAAGGTTTTGTAGCAGTGCCGTGGTGCATGAAGAGCCAATCACTCCACCTGTTGAGGTTAAATATAATCAGCTTCTCATTAATGGACAGTTTGTTGATGCAGCCTCAG...............................................................................GGAAGACATTTCCTACATTTGACCCTCGAACAGGCGAAGCTATTACTACGGTTGCGGAGGCCGACACTGAAGATGTCAACCGTGCAGTCTTTGCTGCCCGTAAAGCATTTGATGAAGGACCATGGCCTAAAATGACTTGTGCA...............................................................................................................................................................................................................................................................................................................................................................................................................................................................GAAAGGTCATGTATAATGTTGCAGTTTGCTGATTTGCTTGAGAGGCACAGTGATGAACTTGCAGCACTTGAGACTTGGGATAAGGGAAAGCCTTACGAACAAGCTGCAAATGAAGAAATACCAATGCTCATTCGTCTTTTCAGATACTATGCTG............................................................................................................................................GTTGGGCTGATAAAATTCATGGTCTTACAGCTCCTGCTGACAGTTTGCACCATGTTCAGACCCTGCATGAGCCAATTGGTGTTGCAGGACAGATAATACCCTGGAATTTTCCGTTATTAATGTTCGCCTGGAAAGTTGGCCCTGCACTTGCTTGTGGTAACACTGTCGTACTAAAACCAGCAGAACAAACACCACTCTCTGCCCTGTATGTGTCAAAGTTATTCCATGAG...........................................................................................................................................................................................................................GTTGGACTTCCCCCTGGAGTCTTAAATGTCATTCCTGGATCCGGTAGTGCAGGTGCAGATCTTGCCAGTCATATGGATGTCG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0236E02-u8qcS/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E271439" ref_strand="+" ref_description="SGN-E271439 [cLEM-5-J13]">
      <seq>ttgcagtttgctgatttgcttgagaggcacagtgatgaacttgcagcacttgagacttgggataagggaaagccttacgaacaagctgcaaatgaagaaataccaatgctcattcgtcttttcagatactatgctggttaagaaaataagaaaaatggcgttatgtttccttttgacagtttaataaccacttattgtatatcaattgacgttctaatgtttgctgaatcaccctaaatgcttttctaagtatttctgcttacatttcttattcaggttgggctgataaaattcatggtcttacagctcctgctgacagtttgcaccatgttcagaccctgcatgagccaattggtgttgcaggacagataataccctggaattttccgttattaatgttcgcctggaaagttggccctgcacttgcttgtggtaacactgtcgtactaaaaccagcagaacaaacaccactctctgccctgtatgtgtcaaagttattccatgaggttggacttccccctggagtcttaaatgtcattcctggatccggtagtgc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0236E02-u8qcS/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0236E02.1" temp_strand="-" temp_description="C02HBa0236E02.1  AC215430.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0236E02 sequenced_by:kribb upload_account_name:korea">
        <position start="120841" stop="119467"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="120541" g_stop="120036" g_length="506"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="506" r_length="506" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="120035" i_stop="119817" i_length="219">
            <donor d_prob="0.959" d_score="1.00"/>
            <acceptor a_prob="0.980" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="119816" g_stop="119767" g_length="50"/>
          <reference_exon_boundary r_type="cDNA" r_start="507" r_stop="556" r_length="50" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0236E02.1" gen_strand="-" ref_id="SGN-E271439" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>556</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0236E02.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E271439" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="120541" e_stop="120036"/>
          <exon e_start="119816" e_stop="119767"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTGCAGTTTGCTGATTTGCTTGAGAGGCACAGTGATGAACTTGCAGCACTTGAGACTTGGGATAAGGGAAAGCCTTACGAACAAGCTGCAAATGAAGAAATACCAATGCTCATTCGTCTTTTCAGATACTATGCTGGTTAAGAAAATAAGAAAAATGGCGTTATGTTTCCTTTTGACAGTTTAATAACCACTTATTGTATATCAATTGACGTTCTAATGTTTGCTGAATCACCCTAAATGCTTTTCTAAGTATTTCTGCTTACATTTCTTATTCAGGTTGGGCTGATAAAATTCATGGTCTTACAGCTCCTGCTGACAGTTTGCACCATGTTCAGACCCTGCATGAGCCAATTGGTGTTGCAGGACAGATAATACCCTGGAATTTTCCGTTATTAATGTTCGCCTGGAAAGTTGGCCCTGCACTTGCTTGTGGTAACACTGTCGTACTAAAACCAGCAGAACAAACACCACTCTCTGCCCTGTATGTGTCAAAGTTATTCCATGAGGTATATAACCATTTTTAGTCTGCACCGGTCGTGAATTCACAGAATTCTAATGAGTACTCATTTGTACTTGTCATTTAGTTATTTCTAGTATGTTGTTTACAAATTTAGTAGTTTCAAATATAGAAGTGGAAACTTTCCACAATTATTGCAGCTCAAATCGAAGATTTCTCCATCTATACAAGATGATAGAATGTAATTTGTCTTCACTCCAACTGTCAGGTTGGACTTCCCCCTGGAGTCTTAAATGTCATTCCTGGATCCGGTAGTGC</genome_strand>
        <mrna_strand>TTGCAGTTTGCTGATTTGCTTGAGAGGCACAGTGATGAACTTGCAGCACTTGAGACTTGGGATAAGGGAAAGCCTTACGAACAAGCTGCAAATGAAGAAATACCAATGCTCATTCGTCTTTTCAGATACTATGCTGGTTAAGAAAATAAGAAAAATGGCGTTATGTTTCCTTTTGACAGTTTAATAACCACTTATTGTATATCAATTGACGTTCTAATGTTTGCTGAATCACCCTAAATGCTTTTCTAAGTATTTCTGCTTACATTTCTTATTCAGGTTGGGCTGATAAAATTCATGGTCTTACAGCTCCTGCTGACAGTTTGCACCATGTTCAGACCCTGCATGAGCCAATTGGTGTTGCAGGACAGATAATACCCTGGAATTTTCCGTTATTAATGTTCGCCTGGAAAGTTGGCCCTGCACTTGCTTGTGGTAACACTGTCGTACTAAAACCAGCAGAACAAACACCACTCTCTGCCCTGTATGTGTCAAAGTTATTCCATGAG...........................................................................................................................................................................................................................GTTGGACTTCCCCCTGGAGTCTTAAATGTCATTCCTGGATCCGGTAGTGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0236E02-u8qcS/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E248945" ref_strand="+" ref_description="SGN-E248945 [cLEF-49-D24]">
      <seq>aaaggtcatgtataatgttgcagtttgctgatttgcttgagaggcacagtgatgaacttgcagcacttgagacttgggataagggaaagccttacgaacaagctgcaaatgaagaaataccaatgctcattcgtcttttcagatactatgctggttaagaaaataagaaaaatggcgttgggctgataaaattcatggtcttacagctcctgctgacagtttgcaccatgttcagaccctgcatgagccaattggtgttgcaggacagataataccctggaattttccgttattaatgttcgcctggaaagttggccctgcacttgcttgtggtaacactgtcgtactaaaaccagcagaacaaacaccactctctgccctgtatgtgtcaaagttattccatgaggttggacttccccctggagtcttaaatgtcattcctggat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0236E02-u8qcS/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0236E02.1" temp_strand="-" temp_description="C02HBa0236E02.1  AC215430.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0236E02 sequenced_by:kribb upload_account_name:korea">
        <position start="120858" stop="119477"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="120558" g_stop="120383" g_length="176"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="176" r_length="176" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="120382" i_stop="120266" i_length="117">
            <donor d_prob="0.000" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="120265" g_stop="120036" g_length="230"/>
          <reference_exon_boundary r_type="cDNA" r_start="177" r_stop="406" r_length="230" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="120035" i_stop="119817" i_length="219">
            <donor d_prob="0.959" d_score="1.00"/>
            <acceptor a_prob="0.980" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="119816" g_stop="119777" g_length="40"/>
          <reference_exon_boundary r_type="cDNA" r_start="407" r_stop="446" r_length="40" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0236E02.1" gen_strand="-" ref_id="SGN-E248945" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>446</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0236E02.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E248945" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="120558" e_stop="120383"/>
          <exon e_start="120265" e_stop="120036"/>
          <exon e_start="119816" e_stop="119777"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAGGTCATGTATAATGTTGCAGTTTGCTGATTTGCTTGAGAGGCACAGTGATGAACTTGCAGCACTTGAGACTTGGGATAAGGGAAAGCCTTACGAACAAGCTGCAAATGAAGAAATACCAATGCTCATTCGTCTTTTCAGATACTATGCTGGTTAAGAAAATAAGAAAAATGGCGTTATGTTTCCTTTTGACAGTTTAATAACCACTTATTGTATATCAATTGACGTTCTAATGTTTGCTGAATCACCCTAAATGCTTTTCTAAGTATTTCTGCTTACATTTCTTATTCAGGTTGGGCTGATAAAATTCATGGTCTTACAGCTCCTGCTGACAGTTTGCACCATGTTCAGACCCTGCATGAGCCAATTGGTGTTGCAGGACAGATAATACCCTGGAATTTTCCGTTATTAATGTTCGCCTGGAAAGTTGGCCCTGCACTTGCTTGTGGTAACACTGTCGTACTAAAACCAGCAGAACAAACACCACTCTCTGCCCTGTATGTGTCAAAGTTATTCCATGAGGTATATAACCATTTTTAGTCTGCACCGGTCGTGAATTCACAGAATTCTAATGAGTACTCATTTGTACTTGTCATTTAGTTATTTCTAGTATGTTGTTTACAAATTTAGTAGTTTCAAATATAGAAGTGGAAACTTTCCACAATTATTGCAGCTCAAATCGAAGATTTCTCCATCTATACAAGATGATAGAATGTAATTTGTCTTCACTCCAACTGTCAGGTTGGACTTCCCCCTGGAGTCTTAAATGTCATTCCTGGAT</genome_strand>
        <mrna_strand>AAAGGTCATGTATAATGTTGCAGTTTGCTGATTTGCTTGAGAGGCACAGTGATGAACTTGCAGCACTTGAGACTTGGGATAAGGGAAAGCCTTACGAACAAGCTGCAAATGAAGAAATACCAATGCTCATTCGTCTTTTCAGATACTATGCTGGTTAAGAAAATAAGAAAAATGGC.....................................................................................................................GTTGGGCTGATAAAATTCATGGTCTTACAGCTCCTGCTGACAGTTTGCACCATGTTCAGACCCTGCATGAGCCAATTGGTGTTGCAGGACAGATAATACCCTGGAATTTTCCGTTATTAATGTTCGCCTGGAAAGTTGGCCCTGCACTTGCTTGTGGTAACACTGTCGTACTAAAACCAGCAGAACAAACACCACTCTCTGCCCTGTATGTGTCAAAGTTATTCCATGAG...........................................................................................................................................................................................................................GTTGGACTTCCCCCTGGAGTCTTAAATGTCATTCCTGGAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0236E02-u8qcS/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E264189" ref_strand="+" ref_description="SGN-E264189 [cLEG-64-J18]">
      <seq>aaccaaatatttccaggaaaggtcatgtataatgttgcagtttgctgatttgcttgagaggcacagtgatgaacttgcagcacttgagacttgggataagggaaagccttacgaacaagctgcaaatgaagaaataccaatgctcattcgtcttttcagatactatgctggttaagaaaataagaaaaatggcgttatgtttccttttgacagtttaataaccacttattgtatatcaattgacgttctaatgtttgctgaatcaccctaaatgcttttctaagtatttctgcttacatttcttattcaggttgggctgataaaattcatggtcttacagctcctgctgacagtttgcaccatgttcagaccctgcatgagccaattggtgttgcaggacagataataccctggaattttccgttattaatgttcgcctggaaagttggccctgcacttgcttgtggtaacactgtcgtactaaaaccagcagaacaaacaccactctctgccctgtatgtgtcaaagttattccatgaagttggacttccccctggagtcttaaatgtcattcctgg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0236E02-u8qcS/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0236E02.1" temp_strand="-" temp_description="C02HBa0236E02.1  AC215430.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0236E02 sequenced_by:kribb upload_account_name:korea">
        <position start="120875" stop="119479"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="120575" g_stop="120036" g_length="540"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="540" r_length="540" r_score="0.998"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="120035" i_stop="119817" i_length="219">
            <donor d_prob="0.959" d_score="0.98"/>
            <acceptor a_prob="0.980" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="119816" g_stop="119779" g_length="38"/>
          <reference_exon_boundary r_type="cDNA" r_start="541" r_stop="578" r_length="38" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0236E02.1" gen_strand="-" ref_id="SGN-E264189" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>578</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0236E02.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E264189" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="120575" e_stop="120036"/>
          <exon e_start="119816" e_stop="119779"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AACCAAATATTTCCAGGAAAGGTCATGTATAATGTTGCAGTTTGCTGATTTGCTTGAGAGGCACAGTGATGAACTTGCAGCACTTGAGACTTGGGATAAGGGAAAGCCTTACGAACAAGCTGCAAATGAAGAAATACCAATGCTCATTCGTCTTTTCAGATACTATGCTGGTTAAGAAAATAAGAAAAATGGCGTTATGTTTCCTTTTGACAGTTTAATAACCACTTATTGTATATCAATTGACGTTCTAATGTTTGCTGAATCACCCTAAATGCTTTTCTAAGTATTTCTGCTTACATTTCTTATTCAGGTTGGGCTGATAAAATTCATGGTCTTACAGCTCCTGCTGACAGTTTGCACCATGTTCAGACCCTGCATGAGCCAATTGGTGTTGCAGGACAGATAATACCCTGGAATTTTCCGTTATTAATGTTCGCCTGGAAAGTTGGCCCTGCACTTGCTTGTGGTAACACTGTCGTACTAAAACCAGCAGAACAAACACCACTCTCTGCCCTGTATGTGTCAAAGTTATTCCATGAGGTATATAACCATTTTTAGTCTGCACCGGTCGTGAATTCACAGAATTCTAATGAGTACTCATTTGTACTTGTCATTTAGTTATTTCTAGTATGTTGTTTACAAATTTAGTAGTTTCAAATATAGAAGTGGAAACTTTCCACAATTATTGCAGCTCAAATCGAAGATTTCTCCATCTATACAAGATGATAGAATGTAATTTGTCTTCACTCCAACTGTCAGGTTGGACTTCCCCCTGGAGTCTTAAATGTCATTCCTGG</genome_strand>
        <mrna_strand>AACCAAATATTTCCAGGAAAGGTCATGTATAATGTTGCAGTTTGCTGATTTGCTTGAGAGGCACAGTGATGAACTTGCAGCACTTGAGACTTGGGATAAGGGAAAGCCTTACGAACAAGCTGCAAATGAAGAAATACCAATGCTCATTCGTCTTTTCAGATACTATGCTGGTTAAGAAAATAAGAAAAATGGCGTTATGTTTCCTTTTGACAGTTTAATAACCACTTATTGTATATCAATTGACGTTCTAATGTTTGCTGAATCACCCTAAATGCTTTTCTAAGTATTTCTGCTTACATTTCTTATTCAGGTTGGGCTGATAAAATTCATGGTCTTACAGCTCCTGCTGACAGTTTGCACCATGTTCAGACCCTGCATGAGCCAATTGGTGTTGCAGGACAGATAATACCCTGGAATTTTCCGTTATTAATGTTCGCCTGGAAAGTTGGCCCTGCACTTGCTTGTGGTAACACTGTCGTACTAAAACCAGCAGAACAAACACCACTCTCTGCCCTGTATGTGTCAAAGTTATTCCATGAA...........................................................................................................................................................................................................................GTTGGACTTCCCCCTGGAGTCTTAAATGTCATTCCTGG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0236E02-u8qcS/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E314892" ref_strand="+" ref_description="SGN-E314892 [cTOA-31-M1]">
      <seq>tgagacttgggataagggaaagccttacgaacaagctgcaaatgaagaaataccaatgctcattcgtcttttcagatactatgctggttaagaaaataagaaaaatggcgttatgtttccttttgacagtttaataaccacttattgtatatcaattgacgttctaatgtttgctgaatcaccctaaatgcttttctaagtatttctgcttacatttcttattcaggttgggctgataaaattcatggtcttacagctcctgctgacagtttgcaccatgttcagaccctgcatgagccaattggtgttgcaggacagataataccctggaattttccgttattaatgttcgcctggaaagttggccctgcacttgcttgtggtaacactgtcgtactaaaaccagcagaacaaacaccactctctgccctgtatgtgtcaaagttattccatgaggttggacttccccctggagtcttaaatgtcattcct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0236E02-u8qcS/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0236E02.1" temp_strand="-" temp_description="C02HBa0236E02.1  AC215430.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0236E02 sequenced_by:kribb upload_account_name:korea">
        <position start="120791" stop="119481"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="120491" g_stop="120036" g_length="456"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="456" r_length="456" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="120035" i_stop="119817" i_length="219">
            <donor d_prob="0.959" d_score="1.00"/>
            <acceptor a_prob="0.980" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="119816" g_stop="119781" g_length="36"/>
          <reference_exon_boundary r_type="cDNA" r_start="457" r_stop="492" r_length="36" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0236E02.1" gen_strand="-" ref_id="SGN-E314892" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>492</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0236E02.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E314892" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="120491" e_stop="120036"/>
          <exon e_start="119816" e_stop="119781"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGAGACTTGGGATAAGGGAAAGCCTTACGAACAAGCTGCAAATGAAGAAATACCAATGCTCATTCGTCTTTTCAGATACTATGCTGGTTAAGAAAATAAGAAAAATGGCGTTATGTTTCCTTTTGACAGTTTAATAACCACTTATTGTATATCAATTGACGTTCTAATGTTTGCTGAATCACCCTAAATGCTTTTCTAAGTATTTCTGCTTACATTTCTTATTCAGGTTGGGCTGATAAAATTCATGGTCTTACAGCTCCTGCTGACAGTTTGCACCATGTTCAGACCCTGCATGAGCCAATTGGTGTTGCAGGACAGATAATACCCTGGAATTTTCCGTTATTAATGTTCGCCTGGAAAGTTGGCCCTGCACTTGCTTGTGGTAACACTGTCGTACTAAAACCAGCAGAACAAACACCACTCTCTGCCCTGTATGTGTCAAAGTTATTCCATGAGGTATATAACCATTTTTAGTCTGCACCGGTCGTGAATTCACAGAATTCTAATGAGTACTCATTTGTACTTGTCATTTAGTTATTTCTAGTATGTTGTTTACAAATTTAGTAGTTTCAAATATAGAAGTGGAAACTTTCCACAATTATTGCAGCTCAAATCGAAGATTTCTCCATCTATACAAGATGATAGAATGTAATTTGTCTTCACTCCAACTGTCAGGTTGGACTTCCCCCTGGAGTCTTAAATGTCATTCCT</genome_strand>
        <mrna_strand>TGAGACTTGGGATAAGGGAAAGCCTTACGAACAAGCTGCAAATGAAGAAATACCAATGCTCATTCGTCTTTTCAGATACTATGCTGGTTAAGAAAATAAGAAAAATGGCGTTATGTTTCCTTTTGACAGTTTAATAACCACTTATTGTATATCAATTGACGTTCTAATGTTTGCTGAATCACCCTAAATGCTTTTCTAAGTATTTCTGCTTACATTTCTTATTCAGGTTGGGCTGATAAAATTCATGGTCTTACAGCTCCTGCTGACAGTTTGCACCATGTTCAGACCCTGCATGAGCCAATTGGTGTTGCAGGACAGATAATACCCTGGAATTTTCCGTTATTAATGTTCGCCTGGAAAGTTGGCCCTGCACTTGCTTGTGGTAACACTGTCGTACTAAAACCAGCAGAACAAACACCACTCTCTGCCCTGTATGTGTCAAAGTTATTCCATGAG...........................................................................................................................................................................................................................GTTGGACTTCCCCCTGGAGTCTTAAATGTCATTCCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0236E02-u8qcS/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E249362" ref_strand="+" ref_description="SGN-E249362 [cLEF-50-K4]">
      <seq>acttgcagcacttgagacttgggataagggaaagccttacgaacaagctgcaaatgaagaaataccaatgctcattcgtcttttcagatactatgctggttaagaaaataagaaaaatggcgttatgtttccttttgacagtttaataaccacttattgtatatcaattgacgttctaatgtttgctgaatcaccctaaatgcttttctaagtatttctgcttacatttcttattcaggttgggctgataaaattcatggtcttacagctcctgctgacagtttgcaccatgttcagaccctgcatgagccaattggtgttgcaggacagataataccctggaattttccgttattaatgttcgcctggaaagttggccctgcacttgcttgtggtaacactgtcgtactaaaaccagcagaacaaacaccactctctgccctgtatgtgtcaaagttattccatgaggttggacttccccctggagtcttaaat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0236E02-u8qcS/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0236E02.1" temp_strand="-" temp_description="C02HBa0236E02.1  AC215430.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0236E02 sequenced_by:kribb upload_account_name:korea">
        <position start="120803" stop="119490"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="120503" g_stop="120036" g_length="468"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="468" r_length="468" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="120035" i_stop="119817" i_length="219">
            <donor d_prob="0.959" d_score="1.00"/>
            <acceptor a_prob="0.980" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="119816" g_stop="119790" g_length="27"/>
          <reference_exon_boundary r_type="cDNA" r_start="469" r_stop="495" r_length="27" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0236E02.1" gen_strand="-" ref_id="SGN-E249362" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>495</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0236E02.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E249362" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="120503" e_stop="120036"/>
          <exon e_start="119816" e_stop="119790"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACTTGCAGCACTTGAGACTTGGGATAAGGGAAAGCCTTACGAACAAGCTGCAAATGAAGAAATACCAATGCTCATTCGTCTTTTCAGATACTATGCTGGTTAAGAAAATAAGAAAAATGGCGTTATGTTTCCTTTTGACAGTTTAATAACCACTTATTGTATATCAATTGACGTTCTAATGTTTGCTGAATCACCCTAAATGCTTTTCTAAGTATTTCTGCTTACATTTCTTATTCAGGTTGGGCTGATAAAATTCATGGTCTTACAGCTCCTGCTGACAGTTTGCACCATGTTCAGACCCTGCATGAGCCAATTGGTGTTGCAGGACAGATAATACCCTGGAATTTTCCGTTATTAATGTTCGCCTGGAAAGTTGGCCCTGCACTTGCTTGTGGTAACACTGTCGTACTAAAACCAGCAGAACAAACACCACTCTCTGCCCTGTATGTGTCAAAGTTATTCCATGAGGTATATAACCATTTTTAGTCTGCACCGGTCGTGAATTCACAGAATTCTAATGAGTACTCATTTGTACTTGTCATTTAGTTATTTCTAGTATGTTGTTTACAAATTTAGTAGTTTCAAATATAGAAGTGGAAACTTTCCACAATTATTGCAGCTCAAATCGAAGATTTCTCCATCTATACAAGATGATAGAATGTAATTTGTCTTCACTCCAACTGTCAGGTTGGACTTCCCCCTGGAGTCTTAAAT</genome_strand>
        <mrna_strand>ACTTGCAGCACTTGAGACTTGGGATAAGGGAAAGCCTTACGAACAAGCTGCAAATGAAGAAATACCAATGCTCATTCGTCTTTTCAGATACTATGCTGGTTAAGAAAATAAGAAAAATGGCGTTATGTTTCCTTTTGACAGTTTAATAACCACTTATTGTATATCAATTGACGTTCTAATGTTTGCTGAATCACCCTAAATGCTTTTCTAAGTATTTCTGCTTACATTTCTTATTCAGGTTGGGCTGATAAAATTCATGGTCTTACAGCTCCTGCTGACAGTTTGCACCATGTTCAGACCCTGCATGAGCCAATTGGTGTTGCAGGACAGATAATACCCTGGAATTTTCCGTTATTAATGTTCGCCTGGAAAGTTGGCCCTGCACTTGCTTGTGGTAACACTGTCGTACTAAAACCAGCAGAACAAACACCACTCTCTGCCCTGTATGTGTCAAAGTTATTCCATGAG...........................................................................................................................................................................................................................GTTGGACTTCCCCCTGGAGTCTTAAAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0236E02-u8qcS/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E277810" ref_strand="+" ref_description="SGN-E277810 [cLEL-5-M19](-)">
      <seq>agagagtggtgtttgttctgctggttttagtacgacangtgttaccacaagcaagtgcagggccaactttccaggcgaacattaataacggaaaattccagggtattatctgtcctgcaacaccaattggctcatgcagggtctgaacatggtgcaaactgtcagcaggagctgtaagaccatgaattttatcagcccaacctgaataagaaatgtaagcagaaatacttagaaaagcatttagggtgattcagcaaacattagaacgtcaattgatatacaataagtggttattaaactgtcaaaaggaaacataacgccattttctcgtgc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0236E02-u8qcS/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0236E02.1" temp_strand="+" temp_description="C02HBa0236E02.1  AC215430.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0236E02 sequenced_by:kribb upload_account_name:korea">
        <position start="119766" stop="120694"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="120066" g_stop="120398" g_length="333"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="333" r_length="333" r_score="0.979"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0236E02.1" gen_strand="+" ref_id="SGN-E277810" ref_strand="+">
        <total_alignment_score>0.979</total_alignment_score>
        <cumulative_length_of_scored_exons>333</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0236E02.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E277810" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="120066" e_stop="120398"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGAGAGTGGTGTTTGTTCTGCTGGTTTTAGTACGACA-GTGTTACCACAAGCAAGTGCAGGGCCAACTTTCCAGGCGAACATTAATAACGGAAAATTCCAGGGTATTATCTGTCCTGCAACACCAATTGGCTCATGCAGGGTCTGAACATGGTGCAAACTGTCAGCAGGAGCTGTAAGACCATGAATTTTATCAGCCCAACCTGAATAAGAAATGTAAGCAGAAATACTTAGAAAAGCATTTAGGGTGATTCAGCAAACATTAGAACGTCAATTGATATACAATAAGTGGTTATTAAACTGTCAAAAGGAAACATAACGCCATTTTTCTTATTT</genome_strand>
        <mrna_strand>AGAGAGTGGTGTTTGTTCTGCTGGTTTTAGTACGACANGTGTTACCACAAGCAAGTGCAGGGCCAACTTTCCAGGCGAACATTAATAACGGAAAATTCCAGGGTATTATCTGTCCTGCAACACCAATTGGCTCATGCAGGGTCTGAACATGGTGCAAACTGTCAGCAGGAGCTGTAAGACCATGAATTTTATCAGCCCAACCTGAATAAGAAATGTAAGCAGAAATACTTAGAAAAGCATTTAGGGTGATTCAGCAAACATTAGAACGTCAATTGATATACAATAAGTGGTTATTAAACTGTCAAAAGGAAACATAACGCCA-TTTTCTCGTGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0236E02-u8qcS/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E727424" ref_strand="+" ref_description="SGN-E727424 [LA14CF05]">
      <seq>cggttcaattttgaatgctctctctttatgtaaacattatgctttgtatgaaataaaggtcctctaagatttctgtaagcaactttgaaaatttctttaggtactccaactactggagaaagggtatcagaaggttttgtagcagtgccgtggtgcatgaagagccaatcactccacctgttgaggttaaatataatcagcttctcattaatggacagtttgttgatgcagcctcagggaagacatttcctacatttgaccctcgaacaggcgaagctattactacggttgcggaggccgacactgaagatgtcaaccgtgcagtctttgctgcccgtaaagcatttgatgaaggaccatggcctaaaatgacttgaaaggtcatgtataatgttgcagtttgctgatttgcttgagaggcacagtgatgaacttgcagcacttgagacttgggataagggaaagccttacgaacaagctgcaaatgaagaaataccaatgctcattcgtcttttcagatactatgctggttaagaaaataagaaaaatggcgttatgtttccttttgacagtttaataaccacttattgtatatcaattgacgttctaatgtttgctgaatcaccctaaatgcttttctaagtatttctgcttacatttcttattcaggttgggctgataaaattcatggtcttacagctcctgctgacagtttgcaccatgttcagaccctgcatgagccaattggtgttgcaggacagataataccctggaattttccgttattaatgttcgcctggaaagttggccctgcacttgcttgtggtaacacggtcgtactaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0236E02-u8qcS/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0236E02.1" temp_strand="-" temp_description="C02HBa0236E02.1  AC215430.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0236E02 sequenced_by:kribb upload_account_name:korea">
        <position start="123447" stop="119790"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="123147" g_stop="123052" g_length="96"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="96" r_length="96" r_score="0.969"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="123051" i_stop="121370" i_length="1682">
            <donor d_prob="0.000" d_score="1.00"/>
            <acceptor a_prob="0.901" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="121369" g_stop="121229" g_length="141"/>
          <reference_exon_boundary r_type="cDNA" r_start="97" r_stop="237" r_length="141" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="121228" i_stop="121150" i_length="79">
            <donor d_prob="0.986" d_score="1.00"/>
            <acceptor a_prob="0.750" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="121149" g_stop="121012" g_length="138"/>
          <reference_exon_boundary r_type="cDNA" r_start="238" r_stop="375" r_length="138" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="121011" i_stop="120560" i_length="452">
            <donor d_prob="0.000" d_score="1.00"/>
            <acceptor a_prob="0.922" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="120559" g_stop="120090" g_length="470"/>
          <reference_exon_boundary r_type="cDNA" r_start="376" r_stop="845" r_length="470" r_score="0.998"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0236E02.1" gen_strand="-" ref_id="SGN-E727424" ref_strand="+">
        <total_alignment_score>0.995</total_alignment_score>
        <cumulative_length_of_scored_exons>845</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0236E02.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E727424" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="123147" e_stop="123052"/>
          <exon e_start="121369" e_stop="121229"/>
          <exon e_start="121149" e_stop="121012"/>
          <exon e_start="120559" e_stop="120090"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAGAACAATTTTGAATGCTCTCTCTTTATGTAAACATTATGCTTTGTATGAAATAAAGGTCCTCTAAGATTTCTGTAAGCAACTTTGAAAATTTCTGTAAGTTCTTCTTTATTTAAATTCCGCAACTATGAAAATGGTAAGGAAAGAGTATGATTGTAGCTTCTCTTGTTCACTGATGACATGACAGTGTGAATAATTTTGATCAACTATGATTTAATCAGTTAAAAGTAATCTATTTATCTTATTTTTGAAATGACTAGTTTGGCTTTAGATGGTACTATAAAGTAGACCTCATTATTTTAGGTTACGCAGAGTGTTTACTTGATTGTCTAAACAAAATTTAGAAATAAATTTTGAACCTAAGCTAAACACAGAGTTAAAGGGTTTCATTTAATCATTAAATTTGTCCTCCGTTATAGTTCTTTTAAGGGAAAGCTCCGAATCAACCCATTTTATCCAAAAATGAAAAGATAAAACCACCCGCCCCTAATATAACCCGCATCCGACCAACTAACATGTAAAACCCACCCAAGTCCAAAGAAAGCAAAACTAACCCTTTAACGGCGGCGGCGGCGGCAGCGACGGCGCAACTTTTTTCCATGAGTTGATTTCCAAGAAAATGGAAATAACTTTGCCCGCATTGGATCTAACTAACAACTTATTGTTCTACCCAAGTCCAAGAAATCAAAAACAAACCCATATAATGGTAGCGTGGCGGCGGCGCGTCTTCTTCAATGGTTTCCAGGAGAAGGGGAAATAACTTTACCCACATCCGACCCAACTAACAAGTAAACCATCTTTCCCGTTATAGTTCTACCCAGGTCCAAGAAGGCAAATACAAACCCCTCTGGGCGTGGCAGCGGCGCATCTTCTTCCATGTCTTCCAAGAAAAGGGAAAATAACTTTGCCTTTTCCCATCTTCTACAGTTCCCTTAATTTTGCATTTTTTTAGAATCTAACTCAACAGTCCCTTTATGGACTTCATCACTTCTAACCAAACACAAATCCAACTAAGAAGAGATAAAACTCAATAAAATGAATAGCGTCCCAGAGGAAAATCTCAACACCTGAGTAGACATAAAAAAGAATCAACTTAGCAGTTAAATAAAATATCACATCATCAACAGCAGAAGTTGCCGCCTGAATCGCCACGAACCCAACCACAAAAGCAGAGACAAATTTCCCTTGCTGAAAGAATCAGCCCAAATCCACTACATTCTTGTACTGCAATTCCAATTACACTTGCCTCGAAATTGCCGCAAATACAGTAACTTGGTGACTTTTGAGGAAGATGGAAAAATTGATTCTTTTCTATTGGGTGGACAAACTCACCAAGAGTAATTAAAAATAAATATGGTCTGTTTTGAGGTTGAAGTTTAATTCAGGTGACATAGTACTTTGCTGGGTTTTGAGGAAACTGGAACAGTATTTGTTTTTTAATCATAATGTTGAGTTTATTTAATTTGGTTCGGATTTTAATTTGATGGGTTTGCGGTCGGATTCATTCTAACCAATAAAAGAATGTTGATGGTTATTTTATCTCCAATAACTATATTGCAAGTACTTGTAAACCAAAAATACATTCACAGATTATAATTAAAGTAGTCTTTTTCTAATCAGAAGAATTATTTTCACCCGTGTTTTCTTTCTTTGGTATCTTGATGATTGAACAAGCTAACTGTGTCTTGATATTACCCCACTTGATTTGTTTGATATTTTAACTGATTTTCTTGAGAAAGGAGCTAGCTAATTATAGGTTCTGCAATTTCAATCTACAGTTAGGTACTCCAACTACTGGAGAAAGGGTATCAGAAGGTTTTGTAGCAGTGCCGTGGTGCATGAAGAGCCAATCACTCCACCTGTTGAGGTTAAATATAATCAGCTTCTCATTAATGGACAGTTTGTTGATGCAGCCTCAGGTTGACCTAAAGTCTTTTCATTTATATGTTATTTCTTCTATAAATCTCAAGTGTAATATGGAGAATTCTACGTCTTCAGGGAAGACATTTCCTACATTTGACCCTCGAACAGGCGAAGCTATTACTACGGTTGCGGAGGCCGACACTGAAGATGTCAACCGTGCAGTCTTTGCTGCCCGTAAAGCATTTGATGAAGGACCATGGCCTAAAATGACTTGTGCAGTAACCGAACTTTCTTATCTTTCCATATCCTCTTCCTTGTCCCAACAGTGAGAGGCGGATTTAGAATTTGAACTTAACATGTTCAACCTTTAAGGTTCTTATCGCTGAACACATTGATCTATCGGACATACGTGTTTAGATTTTAATATTCTCTCATTTTAGTACTTTCACATATATATTTATTTCCTGTATTATATGGTCCCTCTACCGAAGTTAATTTCTCAGTTGGTCGTTCAACTAATAGTAATTATTTGAGTAATATAAGTCACTTTCTTTGTTGAAGAAAATTGGAATCAAGTTGAAAAATGACTTCTTGAGATAATAACTATTTAGCAAAGTGACCATATGAGAAATCAATCCGCCTCTGCAGACAACTACAGCTTGTTTAAACTCCCAGTCTTACTTAAGCATGTACAATAATGTACTTACTTAACCAAATATTTCCAGGAAAGGTCATGTATAATGTTGCAGTTTGCTGATTTGCTTGAGAGGCACAGTGATGAACTTGCAGCACTTGAGACTTGGGATAAGGGAAAGCCTTACGAACAAGCTGCAAATGAAGAAATACCAATGCTCATTCGTCTTTTCAGATACTATGCTGGTTAAGAAAATAAGAAAAATGGCGTTATGTTTCCTTTTGACAGTTTAATAACCACTTATTGTATATCAATTGACGTTCTAATGTTTGCTGAATCACCCTAAATGCTTTTCTAAGTATTTCTGCTTACATTTCTTATTCAGGTTGGGCTGATAAAATTCATGGTCTTACAGCTCCTGCTGACAGTTTGCACCATGTTCAGACCCTGCATGAGCCAATTGGTGTTGCAGGACAGATAATACCCTGGAATTTTCCGTTATTAATGTTCGCCTGGAAAGTTGGCCCTGCACTTGCTTGTGGTAACACTGTCGTACTAAAA</genome_strand>
        <mrna_strand>CGGTTCAATTTTGAATGCTCTCTCTTTATGTAAACATTATGCTTTGTATGAAATAAAGGTCCTCTAAGATTTCTGTAAGCAACTTTGAAAATTTCT..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTAGGTACTCCAACTACTGGAGAAAGGGTATCAGAAGGTTTTGTAGCAGTGCCGTGGTGCATGAAGAGCCAATCACTCCACCTGTTGAGGTTAAATATAATCAGCTTCTCATTAATGGACAGTTTGTTGATGCAGCCTCAG...............................................................................GGAAGACATTTCCTACATTTGACCCTCGAACAGGCGAAGCTATTACTACGGTTGCGGAGGCCGACACTGAAGATGTCAACCGTGCAGTCTTTGCTGCCCGTAAAGCATTTGATGAAGGACCATGGCCTAAAATGACTT....................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAAAGGTCATGTATAATGTTGCAGTTTGCTGATTTGCTTGAGAGGCACAGTGATGAACTTGCAGCACTTGAGACTTGGGATAAGGGAAAGCCTTACGAACAAGCTGCAAATGAAGAAATACCAATGCTCATTCGTCTTTTCAGATACTATGCTGGTTAAGAAAATAAGAAAAATGGCGTTATGTTTCCTTTTGACAGTTTAATAACCACTTATTGTATATCAATTGACGTTCTAATGTTTGCTGAATCACCCTAAATGCTTTTCTAAGTATTTCTGCTTACATTTCTTATTCAGGTTGGGCTGATAAAATTCATGGTCTTACAGCTCCTGCTGACAGTTTGCACCATGTTCAGACCCTGCATGAGCCAATTGGTGTTGCAGGACAGATAATACCCTGGAATTTTCCGTTATTAATGTTCGCCTGGAAAGTTGGCCCTGCACTTGCTTGTGGTAACACGGTCGTACTAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0236E02-u8qcS/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E314995" ref_strand="+" ref_description="SGN-E314995 [cTOA-31-M2]">
      <seq>tgagacttgggataagggaaagccttacgaacaagctgcaaatgaagaaataccaatgctcattcgtcttttcagatactatgctggttaagaaaataagaaaaatggcgttatgtttccttttgacagtttaataaccacttattgtatatcaattgacgttctaatgtttgctgaatcaccctaaatgcttttctaagtatttctgcttacatttcttattcaggttgggctgataaaattcatggtcttacagctcctgctgacagtttgcaccatgttcagaccctgcatgagccaattggtgttgcaggacagataataccctggaattttccgttattaatgttcgcctggaaagttggccctgcacttgcttgtggtaacactgtcgtactaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0236E02-u8qcS/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0236E02.1" temp_strand="-" temp_description="C02HBa0236E02.1  AC215430.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0236E02 sequenced_by:kribb upload_account_name:korea">
        <position start="120791" stop="119790"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="120491" g_stop="120090" g_length="402"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="402" r_length="402" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0236E02.1" gen_strand="-" ref_id="SGN-E314995" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>402</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0236E02.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E314995" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="120491" e_stop="120090"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGAGACTTGGGATAAGGGAAAGCCTTACGAACAAGCTGCAAATGAAGAAATACCAATGCTCATTCGTCTTTTCAGATACTATGCTGGTTAAGAAAATAAGAAAAATGGCGTTATGTTTCCTTTTGACAGTTTAATAACCACTTATTGTATATCAATTGACGTTCTAATGTTTGCTGAATCACCCTAAATGCTTTTCTAAGTATTTCTGCTTACATTTCTTATTCAGGTTGGGCTGATAAAATTCATGGTCTTACAGCTCCTGCTGACAGTTTGCACCATGTTCAGACCCTGCATGAGCCAATTGGTGTTGCAGGACAGATAATACCCTGGAATTTTCCGTTATTAATGTTCGCCTGGAAAGTTGGCCCTGCACTTGCTTGTGGTAACACTGTCGTACTAAAA</genome_strand>
        <mrna_strand>TGAGACTTGGGATAAGGGAAAGCCTTACGAACAAGCTGCAAATGAAGAAATACCAATGCTCATTCGTCTTTTCAGATACTATGCTGGTTAAGAAAATAAGAAAAATGGCGTTATGTTTCCTTTTGACAGTTTAATAACCACTTATTGTATATCAATTGACGTTCTAATGTTTGCTGAATCACCCTAAATGCTTTTCTAAGTATTTCTGCTTACATTTCTTATTCAGGTTGGGCTGATAAAATTCATGGTCTTACAGCTCCTGCTGACAGTTTGCACCATGTTCAGACCCTGCATGAGCCAATTGGTGTTGCAGGACAGATAATACCCTGGAATTTTCCGTTATTAATGTTCGCCTGGAAAGTTGGCCCTGCACTTGCTTGTGGTAACACTGTCGTACTAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0236E02-u8qcS/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E257422" ref_strand="+" ref_description="SGN-E257422 [cLEG-45-M8]">
      <seq>aaaatggcgttatgtttccttttgacagtttaataaccacttattgtatatcaattgacgttctaatgtttgctgaatcaccctaaatgcttttctaagtatttctgcttacatttcttattcaaggtgggctgataaaattcatggtcttacagctcctgctgacagtttgcaccatgttcagaccctgcatgagccaattggtgttgccggacagataataacctggaaatttcccctattaatgttcgcctggaaagatggccctgcactttcttgtggtaacactgt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0236E02-u8qcS/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0236E02.1" temp_strand="-" temp_description="C02HBa0236E02.1  AC215430.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0236E02 sequenced_by:kribb upload_account_name:korea">
        <position start="120690" stop="119800"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="120390" g_stop="120100" g_length="291"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="291" r_length="291" r_score="0.969"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0236E02.1" gen_strand="-" ref_id="SGN-E257422" ref_strand="+">
        <total_alignment_score>0.969</total_alignment_score>
        <cumulative_length_of_scored_exons>291</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0236E02.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E257422" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="120390" e_stop="120100"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAATGGCGTTATGTTTCCTTTTGACAGTTTAATAACCACTTATTGTATATCAATTGACGTTCTAATGTTTGCTGAATCACCCTAAATGCTTTTCTAAGTATTTCTGCTTACATTTCTTATTCAGGTTGGGCTGATAAAATTCATGGTCTTACAGCTCCTGCTGACAGTTTGCACCATGTTCAGACCCTGCATGAGCCAATTGGTGTTGCAGGACAGATAATACCCTGGAATTTTCCGTTATTAATGTTCGCCTGGAAAGTTGGCCCTGCACTTGCTTGTGGTAACACTGT</genome_strand>
        <mrna_strand>AAAATGGCGTTATGTTTCCTTTTGACAGTTTAATAACCACTTATTGTATATCAATTGACGTTCTAATGTTTGCTGAATCACCCTAAATGCTTTTCTAAGTATTTCTGCTTACATTTCTTATTCAAGGTGGGCTGATAAAATTCATGGTCTTACAGCTCCTGCTGACAGTTTGCACCATGTTCAGACCCTGCATGAGCCAATTGGTGTTGCCGGACAGATAATAACCTGGAAATTTCCCCTATTAATGTTCGCCTGGAAAGATGGCCCTGCACTTTCTTGTGGTAACACTGT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0236E02-u8qcS/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E371149" ref_strand="+" ref_description="SGN-E371149 [TUS-28-L13]">
      <seq>aaaggtcctctaagatttctgtaagcaactttgaaaatttctttaggtactccaactactggagaaagggtatcagaaggttttgtagcagtgccgtggtgcatgaagagccaatcactccacctgttgaggttaaatataatcagcttctcattaatggacagtttgttgatgcagcctcagggaagacatttcctacatttgaccctcgaacaggcgaagctattactacggttgcggaggccgacactgaagatgtcaaccgtgcagtctttgctgcccgtaaagcatttgatgaaggaccatggcctaaaatgacttgtgcagaaaggtcatgtataatgttgcagtttgctgatttgcttgagaggcacagtgatgaacttgcagcacttgagacttgggataagggaaagccttacgaacaagctgcaaatgaagaaataccaatgctcattcgtcttttcagatactatgctggttaagaaaataagaaaaatggcgttatgtttccttttgacagtttaataaccacttattgtatatcaattgacgttctaatgtttgctgaatcaccctaaatgcttttctaagtatttctgcttacatttcttattcaggttgggctgataaaattcatggtcttacagctcctgctgacagtttgcaccatgttcagaccctgcatga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0236E02-u8qcS/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0236E02.1" temp_strand="-" temp_description="C02HBa0236E02.1  AC215430.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0236E02 sequenced_by:kribb upload_account_name:korea">
        <position start="123393" stop="119896"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="123093" g_stop="123052" g_length="42"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="42" r_length="42" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="123051" i_stop="121370" i_length="1682">
            <donor d_prob="0.000" d_score="1.00"/>
            <acceptor a_prob="0.901" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="121369" g_stop="121229" g_length="141"/>
          <reference_exon_boundary r_type="cDNA" r_start="43" r_stop="183" r_length="141" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="121228" i_stop="121150" i_length="79">
            <donor d_prob="0.986" d_score="1.00"/>
            <acceptor a_prob="0.750" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="121149" g_stop="121007" g_length="143"/>
          <reference_exon_boundary r_type="cDNA" r_start="184" r_stop="326" r_length="143" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="121006" i_stop="120560" i_length="447">
            <donor d_prob="0.793" d_score="1.00"/>
            <acceptor a_prob="0.922" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="120559" g_stop="120196" g_length="364"/>
          <reference_exon_boundary r_type="cDNA" r_start="327" r_stop="690" r_length="364" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0236E02.1" gen_strand="-" ref_id="SGN-E371149" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>690</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0236E02.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E371149" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="123093" e_stop="123052"/>
          <exon e_start="121369" e_stop="121229"/>
          <exon e_start="121149" e_stop="121007"/>
          <exon e_start="120559" e_stop="120196"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAGGTCCTCTAAGATTTCTGTAAGCAACTTTGAAAATTTCTGTAAGTTCTTCTTTATTTAAATTCCGCAACTATGAAAATGGTAAGGAAAGAGTATGATTGTAGCTTCTCTTGTTCACTGATGACATGACAGTGTGAATAATTTTGATCAACTATGATTTAATCAGTTAAAAGTAATCTATTTATCTTATTTTTGAAATGACTAGTTTGGCTTTAGATGGTACTATAAAGTAGACCTCATTATTTTAGGTTACGCAGAGTGTTTACTTGATTGTCTAAACAAAATTTAGAAATAAATTTTGAACCTAAGCTAAACACAGAGTTAAAGGGTTTCATTTAATCATTAAATTTGTCCTCCGTTATAGTTCTTTTAAGGGAAAGCTCCGAATCAACCCATTTTATCCAAAAATGAAAAGATAAAACCACCCGCCCCTAATATAACCCGCATCCGACCAACTAACATGTAAAACCCACCCAAGTCCAAAGAAAGCAAAACTAACCCTTTAACGGCGGCGGCGGCGGCAGCGACGGCGCAACTTTTTTCCATGAGTTGATTTCCAAGAAAATGGAAATAACTTTGCCCGCATTGGATCTAACTAACAACTTATTGTTCTACCCAAGTCCAAGAAATCAAAAACAAACCCATATAATGGTAGCGTGGCGGCGGCGCGTCTTCTTCAATGGTTTCCAGGAGAAGGGGAAATAACTTTACCCACATCCGACCCAACTAACAAGTAAACCATCTTTCCCGTTATAGTTCTACCCAGGTCCAAGAAGGCAAATACAAACCCCTCTGGGCGTGGCAGCGGCGCATCTTCTTCCATGTCTTCCAAGAAAAGGGAAAATAACTTTGCCTTTTCCCATCTTCTACAGTTCCCTTAATTTTGCATTTTTTTAGAATCTAACTCAACAGTCCCTTTATGGACTTCATCACTTCTAACCAAACACAAATCCAACTAAGAAGAGATAAAACTCAATAAAATGAATAGCGTCCCAGAGGAAAATCTCAACACCTGAGTAGACATAAAAAAGAATCAACTTAGCAGTTAAATAAAATATCACATCATCAACAGCAGAAGTTGCCGCCTGAATCGCCACGAACCCAACCACAAAAGCAGAGACAAATTTCCCTTGCTGAAAGAATCAGCCCAAATCCACTACATTCTTGTACTGCAATTCCAATTACACTTGCCTCGAAATTGCCGCAAATACAGTAACTTGGTGACTTTTGAGGAAGATGGAAAAATTGATTCTTTTCTATTGGGTGGACAAACTCACCAAGAGTAATTAAAAATAAATATGGTCTGTTTTGAGGTTGAAGTTTAATTCAGGTGACATAGTACTTTGCTGGGTTTTGAGGAAACTGGAACAGTATTTGTTTTTTAATCATAATGTTGAGTTTATTTAATTTGGTTCGGATTTTAATTTGATGGGTTTGCGGTCGGATTCATTCTAACCAATAAAAGAATGTTGATGGTTATTTTATCTCCAATAACTATATTGCAAGTACTTGTAAACCAAAAATACATTCACAGATTATAATTAAAGTAGTCTTTTTCTAATCAGAAGAATTATTTTCACCCGTGTTTTCTTTCTTTGGTATCTTGATGATTGAACAAGCTAACTGTGTCTTGATATTACCCCACTTGATTTGTTTGATATTTTAACTGATTTTCTTGAGAAAGGAGCTAGCTAATTATAGGTTCTGCAATTTCAATCTACAGTTAGGTACTCCAACTACTGGAGAAAGGGTATCAGAAGGTTTTGTAGCAGTGCCGTGGTGCATGAAGAGCCAATCACTCCACCTGTTGAGGTTAAATATAATCAGCTTCTCATTAATGGACAGTTTGTTGATGCAGCCTCAGGTTGACCTAAAGTCTTTTCATTTATATGTTATTTCTTCTATAAATCTCAAGTGTAATATGGAGAATTCTACGTCTTCAGGGAAGACATTTCCTACATTTGACCCTCGAACAGGCGAAGCTATTACTACGGTTGCGGAGGCCGACACTGAAGATGTCAACCGTGCAGTCTTTGCTGCCCGTAAAGCATTTGATGAAGGACCATGGCCTAAAATGACTTGTGCAGTAACCGAACTTTCTTATCTTTCCATATCCTCTTCCTTGTCCCAACAGTGAGAGGCGGATTTAGAATTTGAACTTAACATGTTCAACCTTTAAGGTTCTTATCGCTGAACACATTGATCTATCGGACATACGTGTTTAGATTTTAATATTCTCTCATTTTAGTACTTTCACATATATATTTATTTCCTGTATTATATGGTCCCTCTACCGAAGTTAATTTCTCAGTTGGTCGTTCAACTAATAGTAATTATTTGAGTAATATAAGTCACTTTCTTTGTTGAAGAAAATTGGAATCAAGTTGAAAAATGACTTCTTGAGATAATAACTATTTAGCAAAGTGACCATATGAGAAATCAATCCGCCTCTGCAGACAACTACAGCTTGTTTAAACTCCCAGTCTTACTTAAGCATGTACAATAATGTACTTACTTAACCAAATATTTCCAGGAAAGGTCATGTATAATGTTGCAGTTTGCTGATTTGCTTGAGAGGCACAGTGATGAACTTGCAGCACTTGAGACTTGGGATAAGGGAAAGCCTTACGAACAAGCTGCAAATGAAGAAATACCAATGCTCATTCGTCTTTTCAGATACTATGCTGGTTAAGAAAATAAGAAAAATGGCGTTATGTTTCCTTTTGACAGTTTAATAACCACTTATTGTATATCAATTGACGTTCTAATGTTTGCTGAATCACCCTAAATGCTTTTCTAAGTATTTCTGCTTACATTTCTTATTCAGGTTGGGCTGATAAAATTCATGGTCTTACAGCTCCTGCTGACAGTTTGCACCATGTTCAGACCCTGCATGA</genome_strand>
        <mrna_strand>AAAGGTCCTCTAAGATTTCTGTAAGCAACTTTGAAAATTTCT..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTAGGTACTCCAACTACTGGAGAAAGGGTATCAGAAGGTTTTGTAGCAGTGCCGTGGTGCATGAAGAGCCAATCACTCCACCTGTTGAGGTTAAATATAATCAGCTTCTCATTAATGGACAGTTTGTTGATGCAGCCTCAG...............................................................................GGAAGACATTTCCTACATTTGACCCTCGAACAGGCGAAGCTATTACTACGGTTGCGGAGGCCGACACTGAAGATGTCAACCGTGCAGTCTTTGCTGCCCGTAAAGCATTTGATGAAGGACCATGGCCTAAAATGACTTGTGCA...............................................................................................................................................................................................................................................................................................................................................................................................................................................................GAAAGGTCATGTATAATGTTGCAGTTTGCTGATTTGCTTGAGAGGCACAGTGATGAACTTGCAGCACTTGAGACTTGGGATAAGGGAAAGCCTTACGAACAAGCTGCAAATGAAGAAATACCAATGCTCATTCGTCTTTTCAGATACTATGCTGGTTAAGAAAATAAGAAAAATGGCGTTATGTTTCCTTTTGACAGTTTAATAACCACTTATTGTATATCAATTGACGTTCTAATGTTTGCTGAATCACCCTAAATGCTTTTCTAAGTATTTCTGCTTACATTTCTTATTCAGGTTGGGCTGATAAAATTCATGGTCTTACAGCTCCTGCTGACAGTTTGCACCATGTTCAGACCCTGCATGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0236E02-u8qcS/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E302394" ref_strand="+" ref_description="SGN-E302394 [cLEW-27-D18]">
      <seq>cattatgctttgtatgaaataaaggtcctctaagatttctgtaagcaactttgaaaatttctttaggtactccaactactggagaaagggtatcagaaggttttgtagcagtgccgtggtgcatgaagagccaatcactccacctgttgaggttaaatataatcagcttctcattaatggacagtttgttgatgcagcctcagggaagacatttcctacatttgaccctcgaacaggcgaagctattactacggttgcggaggccgacactgaagatgtcaaccgtgcagtctttgctgcccgtaaagcatttgatgaaggaccatggcctaaaatgacttgtgcagaaaggtcatgtataatgttgcagtttgctgatttgcttgagaggcacagtgatgaacttgcagcacttgagacttgggataagggaaagccttacgaacaagctgcaaatgaagaaataccaatgctcattcgtcttttcagatactatgctggttgggctgataaaattcatggtcttacagctcctgctgacagtttgcaccatgttcagaccctgcatg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0236E02-u8qcS/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0236E02.1" temp_strand="-" temp_description="C02HBa0236E02.1  AC215430.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0236E02 sequenced_by:kribb upload_account_name:korea">
        <position start="123413" stop="119897"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="123113" g_stop="123052" g_length="62"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="62" r_length="62" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="123051" i_stop="121370" i_length="1682">
            <donor d_prob="0.000" d_score="1.00"/>
            <acceptor a_prob="0.901" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="121369" g_stop="121229" g_length="141"/>
          <reference_exon_boundary r_type="cDNA" r_start="63" r_stop="203" r_length="141" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="121228" i_stop="121150" i_length="79">
            <donor d_prob="0.986" d_score="1.00"/>
            <acceptor a_prob="0.750" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="121149" g_stop="121007" g_length="143"/>
          <reference_exon_boundary r_type="cDNA" r_start="204" r_stop="346" r_length="143" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="121006" i_stop="120560" i_length="447">
            <donor d_prob="0.793" d_score="1.00"/>
            <acceptor a_prob="0.922" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="120559" g_stop="120406" g_length="154"/>
          <reference_exon_boundary r_type="cDNA" r_start="347" r_stop="500" r_length="154" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="120405" i_stop="120266" i_length="140">
            <donor d_prob="0.000" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="120265" g_stop="120197" g_length="69"/>
          <reference_exon_boundary r_type="cDNA" r_start="501" r_stop="569" r_length="69" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0236E02.1" gen_strand="-" ref_id="SGN-E302394" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>569</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0236E02.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E302394" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="123113" e_stop="123052"/>
          <exon e_start="121369" e_stop="121229"/>
          <exon e_start="121149" e_stop="121007"/>
          <exon e_start="120559" e_stop="120406"/>
          <exon e_start="120265" e_stop="120197"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CATTATGCTTTGTATGAAATAAAGGTCCTCTAAGATTTCTGTAAGCAACTTTGAAAATTTCTGTAAGTTCTTCTTTATTTAAATTCCGCAACTATGAAAATGGTAAGGAAAGAGTATGATTGTAGCTTCTCTTGTTCACTGATGACATGACAGTGTGAATAATTTTGATCAACTATGATTTAATCAGTTAAAAGTAATCTATTTATCTTATTTTTGAAATGACTAGTTTGGCTTTAGATGGTACTATAAAGTAGACCTCATTATTTTAGGTTACGCAGAGTGTTTACTTGATTGTCTAAACAAAATTTAGAAATAAATTTTGAACCTAAGCTAAACACAGAGTTAAAGGGTTTCATTTAATCATTAAATTTGTCCTCCGTTATAGTTCTTTTAAGGGAAAGCTCCGAATCAACCCATTTTATCCAAAAATGAAAAGATAAAACCACCCGCCCCTAATATAACCCGCATCCGACCAACTAACATGTAAAACCCACCCAAGTCCAAAGAAAGCAAAACTAACCCTTTAACGGCGGCGGCGGCGGCAGCGACGGCGCAACTTTTTTCCATGAGTTGATTTCCAAGAAAATGGAAATAACTTTGCCCGCATTGGATCTAACTAACAACTTATTGTTCTACCCAAGTCCAAGAAATCAAAAACAAACCCATATAATGGTAGCGTGGCGGCGGCGCGTCTTCTTCAATGGTTTCCAGGAGAAGGGGAAATAACTTTACCCACATCCGACCCAACTAACAAGTAAACCATCTTTCCCGTTATAGTTCTACCCAGGTCCAAGAAGGCAAATACAAACCCCTCTGGGCGTGGCAGCGGCGCATCTTCTTCCATGTCTTCCAAGAAAAGGGAAAATAACTTTGCCTTTTCCCATCTTCTACAGTTCCCTTAATTTTGCATTTTTTTAGAATCTAACTCAACAGTCCCTTTATGGACTTCATCACTTCTAACCAAACACAAATCCAACTAAGAAGAGATAAAACTCAATAAAATGAATAGCGTCCCAGAGGAAAATCTCAACACCTGAGTAGACATAAAAAAGAATCAACTTAGCAGTTAAATAAAATATCACATCATCAACAGCAGAAGTTGCCGCCTGAATCGCCACGAACCCAACCACAAAAGCAGAGACAAATTTCCCTTGCTGAAAGAATCAGCCCAAATCCACTACATTCTTGTACTGCAATTCCAATTACACTTGCCTCGAAATTGCCGCAAATACAGTAACTTGGTGACTTTTGAGGAAGATGGAAAAATTGATTCTTTTCTATTGGGTGGACAAACTCACCAAGAGTAATTAAAAATAAATATGGTCTGTTTTGAGGTTGAAGTTTAATTCAGGTGACATAGTACTTTGCTGGGTTTTGAGGAAACTGGAACAGTATTTGTTTTTTAATCATAATGTTGAGTTTATTTAATTTGGTTCGGATTTTAATTTGATGGGTTTGCGGTCGGATTCATTCTAACCAATAAAAGAATGTTGATGGTTATTTTATCTCCAATAACTATATTGCAAGTACTTGTAAACCAAAAATACATTCACAGATTATAATTAAAGTAGTCTTTTTCTAATCAGAAGAATTATTTTCACCCGTGTTTTCTTTCTTTGGTATCTTGATGATTGAACAAGCTAACTGTGTCTTGATATTACCCCACTTGATTTGTTTGATATTTTAACTGATTTTCTTGAGAAAGGAGCTAGCTAATTATAGGTTCTGCAATTTCAATCTACAGTTAGGTACTCCAACTACTGGAGAAAGGGTATCAGAAGGTTTTGTAGCAGTGCCGTGGTGCATGAAGAGCCAATCACTCCACCTGTTGAGGTTAAATATAATCAGCTTCTCATTAATGGACAGTTTGTTGATGCAGCCTCAGGTTGACCTAAAGTCTTTTCATTTATATGTTATTTCTTCTATAAATCTCAAGTGTAATATGGAGAATTCTACGTCTTCAGGGAAGACATTTCCTACATTTGACCCTCGAACAGGCGAAGCTATTACTACGGTTGCGGAGGCCGACACTGAAGATGTCAACCGTGCAGTCTTTGCTGCCCGTAAAGCATTTGATGAAGGACCATGGCCTAAAATGACTTGTGCAGTAACCGAACTTTCTTATCTTTCCATATCCTCTTCCTTGTCCCAACAGTGAGAGGCGGATTTAGAATTTGAACTTAACATGTTCAACCTTTAAGGTTCTTATCGCTGAACACATTGATCTATCGGACATACGTGTTTAGATTTTAATATTCTCTCATTTTAGTACTTTCACATATATATTTATTTCCTGTATTATATGGTCCCTCTACCGAAGTTAATTTCTCAGTTGGTCGTTCAACTAATAGTAATTATTTGAGTAATATAAGTCACTTTCTTTGTTGAAGAAAATTGGAATCAAGTTGAAAAATGACTTCTTGAGATAATAACTATTTAGCAAAGTGACCATATGAGAAATCAATCCGCCTCTGCAGACAACTACAGCTTGTTTAAACTCCCAGTCTTACTTAAGCATGTACAATAATGTACTTACTTAACCAAATATTTCCAGGAAAGGTCATGTATAATGTTGCAGTTTGCTGATTTGCTTGAGAGGCACAGTGATGAACTTGCAGCACTTGAGACTTGGGATAAGGGAAAGCCTTACGAACAAGCTGCAAATGAAGAAATACCAATGCTCATTCGTCTTTTCAGATACTATGCTGGTTAAGAAAATAAGAAAAATGGCGTTATGTTTCCTTTTGACAGTTTAATAACCACTTATTGTATATCAATTGACGTTCTAATGTTTGCTGAATCACCCTAAATGCTTTTCTAAGTATTTCTGCTTACATTTCTTATTCAGGTTGGGCTGATAAAATTCATGGTCTTACAGCTCCTGCTGACAGTTTGCACCATGTTCAGACCCTGCATG</genome_strand>
        <mrna_strand>CATTATGCTTTGTATGAAATAAAGGTCCTCTAAGATTTCTGTAAGCAACTTTGAAAATTTCT..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTAGGTACTCCAACTACTGGAGAAAGGGTATCAGAAGGTTTTGTAGCAGTGCCGTGGTGCATGAAGAGCCAATCACTCCACCTGTTGAGGTTAAATATAATCAGCTTCTCATTAATGGACAGTTTGTTGATGCAGCCTCAG...............................................................................GGAAGACATTTCCTACATTTGACCCTCGAACAGGCGAAGCTATTACTACGGTTGCGGAGGCCGACACTGAAGATGTCAACCGTGCAGTCTTTGCTGCCCGTAAAGCATTTGATGAAGGACCATGGCCTAAAATGACTTGTGCA...............................................................................................................................................................................................................................................................................................................................................................................................................................................................GAAAGGTCATGTATAATGTTGCAGTTTGCTGATTTGCTTGAGAGGCACAGTGATGAACTTGCAGCACTTGAGACTTGGGATAAGGGAAAGCCTTACGAACAAGCTGCAAATGAAGAAATACCAATGCTCATTCGTCTTTTCAGATACTATGCTG............................................................................................................................................GTTGGGCTGATAAAATTCATGGTCTTACAGCTCCTGCTGACAGTTTGCACCATGTTCAGACCCTGCATG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0236E02-u8qcS/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E334199" ref_strand="+" ref_description="SGN-E334199 [cTOD-21-L15]">
      <seq>aggcggatttagaatttgaacttaacatgttcaacctttaaggttcttatcgctgaacacattgatctatcggacatacgtgtttagattttaatattctctcattttagtactttcacatatatatttatttcctgtattatatggtccctctaccgaagttaatttctcagttggtcgttcaactaatagtaattatttgagtaatataagtcactttctttgttgaagaaaattggaatcaagttgaaaaatgacttcttgagataataactatttagcaaagtgaccatatgagaaatcaatccgcctctgcagacaactacagcttgtttaaactcccagtcttacttaagcatgtacaataatgtacttacttaaccaaatatttccaggaaaggtcatgtataatgttgcagtttgctgatttgcttgagaggcacagtgatgaacttgcagcacttgagacttgggataagggaaagccttacgaacaagctgcaaatgaagaaataccaatgctcattcgtcttttcagatactatgctgggttaagaaaataagaaaaatggcgttatgtttcccttttgacagtttaataaccacttattgtatnatcatttgacgttctaatggtttgctgaatcaccctaaatgcttttctaagtatttctgctta</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0236E02-u8qcS/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0236E02.1" temp_strand="-" temp_description="C02HBa0236E02.1  AC215430.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0236E02 sequenced_by:kribb upload_account_name:korea">
        <position start="121254" stop="119980"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="120954" g_stop="120280" g_length="675"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="679" r_length="679" r_score="0.987"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0236E02.1" gen_strand="-" ref_id="SGN-E334199" ref_strand="+">
        <total_alignment_score>0.987</total_alignment_score>
        <cumulative_length_of_scored_exons>675</cumulative_length_of_scored_exons>
        <coverage percentage="0.994" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0236E02.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E334199" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="120954" e_stop="120280"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGGCGGATTTAGAATTTGAACTTAACATGTTCAACCTTTAAGGTTCTTATCGCTGAACACATTGATCTATCGGACATACGTGTTTAGATTTTAATATTCTCTCATTTTAGTACTTTCACATATATATTTATTTCCTGTATTATATGGTCCCTCTACCGAAGTTAATTTCTCAGTTGGTCGTTCAACTAATAGTAATTATTTGAGTAATATAAGTCACTTTCTTTGTTGAAGAAAATTGGAATCAAGTTGAAAAATGACTTCTTGAGATAATAACTATTTAGCAAAGTGACCATATGAGAAATCAATCCGCCTCTGCAGACAACTACAGCTTGTTTAAACTCCCAGTCTTACTTAAGCATGTACAATAATGTACTTACTTAACCAAATATTTCCAGGAAAGGTCATGTATAATGTTGCAGTTTGCTGATTTGCTTGAGAGGCACAGTGATGAACTTGCAGCACTTGAGACTTGGGATAAGGGAAAGCCTTACGAACAAGCTGCAAATGAAGAAATACCAATGCTCATTCGTCTTTTCAGATACTATGCT-GGTTAAGAAAATAAGAAAAATGGCGTTATGTTT-CCTTTTGACAGTTTAATAACCACTTATTGTAT-ATCAATTGACGTTCTAAT-GTTTGCTGAATCACCCTAAATGCTTTTCTAAGTATTTCTGCTTA</genome_strand>
        <mrna_strand>AGGCGGATTTAGAATTTGAACTTAACATGTTCAACCTTTAAGGTTCTTATCGCTGAACACATTGATCTATCGGACATACGTGTTTAGATTTTAATATTCTCTCATTTTAGTACTTTCACATATATATTTATTTCCTGTATTATATGGTCCCTCTACCGAAGTTAATTTCTCAGTTGGTCGTTCAACTAATAGTAATTATTTGAGTAATATAAGTCACTTTCTTTGTTGAAGAAAATTGGAATCAAGTTGAAAAATGACTTCTTGAGATAATAACTATTTAGCAAAGTGACCATATGAGAAATCAATCCGCCTCTGCAGACAACTACAGCTTGTTTAAACTCCCAGTCTTACTTAAGCATGTACAATAATGTACTTACTTAACCAAATATTTCCAGGAAAGGTCATGTATAATGTTGCAGTTTGCTGATTTGCTTGAGAGGCACAGTGATGAACTTGCAGCACTTGAGACTTGGGATAAGGGAAAGCCTTACGAACAAGCTGCAAATGAAGAAATACCAATGCTCATTCGTCTTTTCAGATACTATGCTGGGTTAAGAAAATAAGAAAAATGGCGTTATGTTTCCCTTTTGACAGTTTAATAACCACTTATTGTATNATCATTTGACGTTCTAATGGTTTGCTGAATCACCCTAAATGCTTTTCTAAGTATTTCTGCTTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0236E02-u8qcS/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E246766" ref_strand="+" ref_description="SGN-E246766 [cLEF-45-H10]">
      <seq>taaatataatcagcttctcattaatggacagtttgttgatgcagcctcagggaagacatttcctacatttgaccctcgaacaggcgaagctattactacggttgcggaggccgacactgaagatgtcaaccgtgcagtctttgctgcccgtaaagcatttgatgaaggaccatggcctaaaatgacttgtgcagtaaccgaactttcttatctttccatatcctcttccttgtcccaacagtgagaggcggatttagaatttgaacttaacatgttcaacctttaaggaaaggtcatgtataatgttgcagtttgctgatttgcttgagaggcacagtgatgaacttgcagcacttgagacttgggataagggaaagccttacgaacaagctgcaaatgaagaaataccaatgctcattcgtcttttcagatactatgctggttaagaaaataagaaaaatggcgttatgtttccttttgacagtttaataaccacttattgtatatcaattgacgttctaatgtttgctgaatcaccctaaatgct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0236E02-u8qcS/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0236E02.1" temp_strand="-" temp_description="C02HBa0236E02.1  AC215430.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0236E02 sequenced_by:kribb upload_account_name:korea">
        <position start="121578" stop="120000"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="121278" g_stop="121229" g_length="50"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="50" r_length="50" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="121228" i_stop="121150" i_length="79">
            <donor d_prob="0.986" d_score="1.00"/>
            <acceptor a_prob="0.750" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="121149" g_stop="120913" g_length="237"/>
          <reference_exon_boundary r_type="cDNA" r_start="51" r_stop="287" r_length="237" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="120912" i_stop="120560" i_length="353">
            <donor d_prob="0.177" d_score="1.00"/>
            <acceptor a_prob="0.922" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="120559" g_stop="120300" g_length="260"/>
          <reference_exon_boundary r_type="cDNA" r_start="288" r_stop="547" r_length="260" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0236E02.1" gen_strand="-" ref_id="SGN-E246766" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>547</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0236E02.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E246766" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="121278" e_stop="121229"/>
          <exon e_start="121149" e_stop="120913"/>
          <exon e_start="120559" e_stop="120300"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TAAATATAATCAGCTTCTCATTAATGGACAGTTTGTTGATGCAGCCTCAGGTTGACCTAAAGTCTTTTCATTTATATGTTATTTCTTCTATAAATCTCAAGTGTAATATGGAGAATTCTACGTCTTCAGGGAAGACATTTCCTACATTTGACCCTCGAACAGGCGAAGCTATTACTACGGTTGCGGAGGCCGACACTGAAGATGTCAACCGTGCAGTCTTTGCTGCCCGTAAAGCATTTGATGAAGGACCATGGCCTAAAATGACTTGTGCAGTAACCGAACTTTCTTATCTTTCCATATCCTCTTCCTTGTCCCAACAGTGAGAGGCGGATTTAGAATTTGAACTTAACATGTTCAACCTTTAAGGTTCTTATCGCTGAACACATTGATCTATCGGACATACGTGTTTAGATTTTAATATTCTCTCATTTTAGTACTTTCACATATATATTTATTTCCTGTATTATATGGTCCCTCTACCGAAGTTAATTTCTCAGTTGGTCGTTCAACTAATAGTAATTATTTGAGTAATATAAGTCACTTTCTTTGTTGAAGAAAATTGGAATCAAGTTGAAAAATGACTTCTTGAGATAATAACTATTTAGCAAAGTGACCATATGAGAAATCAATCCGCCTCTGCAGACAACTACAGCTTGTTTAAACTCCCAGTCTTACTTAAGCATGTACAATAATGTACTTACTTAACCAAATATTTCCAGGAAAGGTCATGTATAATGTTGCAGTTTGCTGATTTGCTTGAGAGGCACAGTGATGAACTTGCAGCACTTGAGACTTGGGATAAGGGAAAGCCTTACGAACAAGCTGCAAATGAAGAAATACCAATGCTCATTCGTCTTTTCAGATACTATGCTGGTTAAGAAAATAAGAAAAATGGCGTTATGTTTCCTTTTGACAGTTTAATAACCACTTATTGTATATCAATTGACGTTCTAATGTTTGCTGAATCACCCTAAATGCT</genome_strand>
        <mrna_strand>TAAATATAATCAGCTTCTCATTAATGGACAGTTTGTTGATGCAGCCTCAG...............................................................................GGAAGACATTTCCTACATTTGACCCTCGAACAGGCGAAGCTATTACTACGGTTGCGGAGGCCGACACTGAAGATGTCAACCGTGCAGTCTTTGCTGCCCGTAAAGCATTTGATGAAGGACCATGGCCTAAAATGACTTGTGCAGTAACCGAACTTTCTTATCTTTCCATATCCTCTTCCTTGTCCCAACAGTGAGAGGCGGATTTAGAATTTGAACTTAACATGTTCAACCTTTAAG.................................................................................................................................................................................................................................................................................................................................................................GAAAGGTCATGTATAATGTTGCAGTTTGCTGATTTGCTTGAGAGGCACAGTGATGAACTTGCAGCACTTGAGACTTGGGATAAGGGAAAGCCTTACGAACAAGCTGCAAATGAAGAAATACCAATGCTCATTCGTCTTTTCAGATACTATGCTGGTTAAGAAAATAAGAAAAATGGCGTTATGTTTCCTTTTGACAGTTTAATAACCACTTATTGTATATCAATTGACGTTCTAATGTTTGCTGAATCACCCTAAATGCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0236E02-u8qcS/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E302285" ref_strand="+" ref_description="SGN-E302285 [cLEW-19-P1]">
      <seq>cgaagttaatttctcagttggtcgttcaactaatagtaattatttgagtaatataagtcactttctttgttgaagaaaattggaatcaagttgaaaaatgacttcttgagataataactatttagcaaagtgaccatatgagaaatcaatccgcctctgcagacaactacagcttgtttaaactcccagtcttacttaagcatgtacaataatgtacttacttaaccaaatatttccaggaaaggtcatgtataatgttgcagtttgctgatttgcttgagaggcacagtgatgaacttgcagcacttgagacttgggataagggaaagccttacgaacaagctgcaaatgaagaaataccaatgctcattcgtcttttcagatactatgctggttaagaaaataagaaaaatggcgttatgtttccttttgacagtttaataaccacttattgtatatcaattgacgttctaatgtttgctgaatcaccct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0236E02-u8qcS/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0236E02.1" temp_strand="-" temp_description="C02HBa0236E02.1  AC215430.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0236E02 sequenced_by:kribb upload_account_name:korea">
        <position start="121098" stop="120007"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="120798" g_stop="120307" g_length="492"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="492" r_length="492" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0236E02.1" gen_strand="-" ref_id="SGN-E302285" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>492</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0236E02.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E302285" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="120798" e_stop="120307"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CGAAGTTAATTTCTCAGTTGGTCGTTCAACTAATAGTAATTATTTGAGTAATATAAGTCACTTTCTTTGTTGAAGAAAATTGGAATCAAGTTGAAAAATGACTTCTTGAGATAATAACTATTTAGCAAAGTGACCATATGAGAAATCAATCCGCCTCTGCAGACAACTACAGCTTGTTTAAACTCCCAGTCTTACTTAAGCATGTACAATAATGTACTTACTTAACCAAATATTTCCAGGAAAGGTCATGTATAATGTTGCAGTTTGCTGATTTGCTTGAGAGGCACAGTGATGAACTTGCAGCACTTGAGACTTGGGATAAGGGAAAGCCTTACGAACAAGCTGCAAATGAAGAAATACCAATGCTCATTCGTCTTTTCAGATACTATGCTGGTTAAGAAAATAAGAAAAATGGCGTTATGTTTCCTTTTGACAGTTTAATAACCACTTATTGTATATCAATTGACGTTCTAATGTTTGCTGAATCACCCT</genome_strand>
        <mrna_strand>CGAAGTTAATTTCTCAGTTGGTCGTTCAACTAATAGTAATTATTTGAGTAATATAAGTCACTTTCTTTGTTGAAGAAAATTGGAATCAAGTTGAAAAATGACTTCTTGAGATAATAACTATTTAGCAAAGTGACCATATGAGAAATCAATCCGCCTCTGCAGACAACTACAGCTTGTTTAAACTCCCAGTCTTACTTAAGCATGTACAATAATGTACTTACTTAACCAAATATTTCCAGGAAAGGTCATGTATAATGTTGCAGTTTGCTGATTTGCTTGAGAGGCACAGTGATGAACTTGCAGCACTTGAGACTTGGGATAAGGGAAAGCCTTACGAACAAGCTGCAAATGAAGAAATACCAATGCTCATTCGTCTTTTCAGATACTATGCTGGTTAAGAAAATAAGAAAAATGGCGTTATGTTTCCTTTTGACAGTTTAATAACCACTTATTGTATATCAATTGACGTTCTAATGTTTGCTGAATCACCCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0236E02-u8qcS/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E329876" ref_strand="+" ref_description="SGN-E329876 [cTOD-3-H18]">
      <seq>ggatttagaatttgaacttaacatgttcaacctttaaggttcttagcgctgaacacattgatctatcggacatacgtgtttagattttaatattctctcattttagtactttcacatatatatttatttcctgtattatatggtccctctaccgaagttaatttctcagttggtcgttcaactaatagtaattatttgagtaatataagtcactttctttgttgaagaaaattggaatcaagttgaaaaatgacttcttgagataataactatttagcaaagtgaccatatgagaaatcaatccgcctctgcagacaactacagcttgtttaaactcccagtcttacttaagcatgtacaataatgtacttacttaaccaaatatttccaggaaaggtcatgtataatgttgcagtttgctgatttgcttgagaggcacagtgatgaacttgcagcacttgagacttgggataagggaaagccttacgaacaagctgcaaatgaagaaataccaatgctcattcgtcttttcagatactatgctggttaagaaaataagaaaaatggcgttatgtttccttttgacagtttaataaccacttattgtatatcaattgacgttctaat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0236E02-u8qcS/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0236E02.1" temp_strand="-" temp_description="C02HBa0236E02.1  AC215430.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0236E02 sequenced_by:kribb upload_account_name:korea">
        <position start="121250" stop="120024"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="120950" g_stop="120324" g_length="627"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="627" r_length="627" r_score="0.998"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0236E02.1" gen_strand="-" ref_id="SGN-E329876" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>627</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0236E02.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E329876" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="120950" e_stop="120324"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGATTTAGAATTTGAACTTAACATGTTCAACCTTTAAGGTTCTTATCGCTGAACACATTGATCTATCGGACATACGTGTTTAGATTTTAATATTCTCTCATTTTAGTACTTTCACATATATATTTATTTCCTGTATTATATGGTCCCTCTACCGAAGTTAATTTCTCAGTTGGTCGTTCAACTAATAGTAATTATTTGAGTAATATAAGTCACTTTCTTTGTTGAAGAAAATTGGAATCAAGTTGAAAAATGACTTCTTGAGATAATAACTATTTAGCAAAGTGACCATATGAGAAATCAATCCGCCTCTGCAGACAACTACAGCTTGTTTAAACTCCCAGTCTTACTTAAGCATGTACAATAATGTACTTACTTAACCAAATATTTCCAGGAAAGGTCATGTATAATGTTGCAGTTTGCTGATTTGCTTGAGAGGCACAGTGATGAACTTGCAGCACTTGAGACTTGGGATAAGGGAAAGCCTTACGAACAAGCTGCAAATGAAGAAATACCAATGCTCATTCGTCTTTTCAGATACTATGCTGGTTAAGAAAATAAGAAAAATGGCGTTATGTTTCCTTTTGACAGTTTAATAACCACTTATTGTATATCAATTGACGTTCTAAT</genome_strand>
        <mrna_strand>GGATTTAGAATTTGAACTTAACATGTTCAACCTTTAAGGTTCTTAGCGCTGAACACATTGATCTATCGGACATACGTGTTTAGATTTTAATATTCTCTCATTTTAGTACTTTCACATATATATTTATTTCCTGTATTATATGGTCCCTCTACCGAAGTTAATTTCTCAGTTGGTCGTTCAACTAATAGTAATTATTTGAGTAATATAAGTCACTTTCTTTGTTGAAGAAAATTGGAATCAAGTTGAAAAATGACTTCTTGAGATAATAACTATTTAGCAAAGTGACCATATGAGAAATCAATCCGCCTCTGCAGACAACTACAGCTTGTTTAAACTCCCAGTCTTACTTAAGCATGTACAATAATGTACTTACTTAACCAAATATTTCCAGGAAAGGTCATGTATAATGTTGCAGTTTGCTGATTTGCTTGAGAGGCACAGTGATGAACTTGCAGCACTTGAGACTTGGGATAAGGGAAAGCCTTACGAACAAGCTGCAAATGAAGAAATACCAATGCTCATTCGTCTTTTCAGATACTATGCTGGTTAAGAAAATAAGAAAAATGGCGTTATGTTTCCTTTTGACAGTTTAATAACCACTTATTGTATATCAATTGACGTTCTAAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0236E02-u8qcS/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E271849" ref_strand="+" ref_description="SGN-E271849 [cLEM-8-F13]">
      <seq>aggtcctctaagatttctgtaagcaactgggaaaatttctttaggtactccaactactatggaaagggtatcagaaggttttgtatcactgccttggtgcatgaagagccaatcactccacctgttgaggttaaatataatcagcttctcattaatggacagtttgttgatgcagcctcagggaagacatttcctacatttgaccctcgaacaggcgaagctattactacggttgcggaggccgacactgaagatgtcaaccgtgcagtctttgctgcccgtaaagcatcctaacactgaccatggcctaaaatgacttgtgcagaaaggtcatgtataatgttgcagtttgctgatttgcttgagaggcacagtgatgaacttgcagcacttgagacttgggataagggaaagccttacgaacaagctgcaaatgaagaaataccaatgctcattcgtcttttcagatactatgct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0236E02-u8qcS/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0236E02.1" temp_strand="-" temp_description="C02HBa0236E02.1  AC215430.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0236E02 sequenced_by:kribb upload_account_name:korea">
        <position start="123391" stop="120107"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="123091" g_stop="123052" g_length="40"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="40" r_length="40" r_score="0.950"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="123051" i_stop="121370" i_length="1682">
            <donor d_prob="0.000" d_score="0.95"/>
            <acceptor a_prob="0.901" a_score="0.90"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="121369" g_stop="121229" g_length="141"/>
          <reference_exon_boundary r_type="cDNA" r_start="41" r_stop="181" r_length="141" r_score="0.957"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="121228" i_stop="121150" i_length="79">
            <donor d_prob="0.986" d_score="1.00"/>
            <acceptor a_prob="0.750" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="121149" g_stop="121007" g_length="143"/>
          <reference_exon_boundary r_type="cDNA" r_start="182" r_stop="324" r_length="143" r_score="0.951"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="121006" i_stop="120560" i_length="447">
            <donor d_prob="0.793" d_score="0.86"/>
            <acceptor a_prob="0.922" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="120559" g_stop="120407" g_length="153"/>
          <reference_exon_boundary r_type="cDNA" r_start="325" r_stop="477" r_length="153" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0236E02.1" gen_strand="-" ref_id="SGN-E271849" ref_strand="+">
        <total_alignment_score>0.970</total_alignment_score>
        <cumulative_length_of_scored_exons>477</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0236E02.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E271849" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="123091" e_stop="123052"/>
          <exon e_start="121369" e_stop="121229"/>
          <exon e_start="121149" e_stop="121007"/>
          <exon e_start="120559" e_stop="120407"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGGTCCTCTAAGATTTCTGTAAGCAACTTTGAAAATTTCTGTAAGTTCTTCTTTATTTAAATTCCGCAACTATGAAAATGGTAAGGAAAGAGTATGATTGTAGCTTCTCTTGTTCACTGATGACATGACAGTGTGAATAATTTTGATCAACTATGATTTAATCAGTTAAAAGTAATCTATTTATCTTATTTTTGAAATGACTAGTTTGGCTTTAGATGGTACTATAAAGTAGACCTCATTATTTTAGGTTACGCAGAGTGTTTACTTGATTGTCTAAACAAAATTTAGAAATAAATTTTGAACCTAAGCTAAACACAGAGTTAAAGGGTTTCATTTAATCATTAAATTTGTCCTCCGTTATAGTTCTTTTAAGGGAAAGCTCCGAATCAACCCATTTTATCCAAAAATGAAAAGATAAAACCACCCGCCCCTAATATAACCCGCATCCGACCAACTAACATGTAAAACCCACCCAAGTCCAAAGAAAGCAAAACTAACCCTTTAACGGCGGCGGCGGCGGCAGCGACGGCGCAACTTTTTTCCATGAGTTGATTTCCAAGAAAATGGAAATAACTTTGCCCGCATTGGATCTAACTAACAACTTATTGTTCTACCCAAGTCCAAGAAATCAAAAACAAACCCATATAATGGTAGCGTGGCGGCGGCGCGTCTTCTTCAATGGTTTCCAGGAGAAGGGGAAATAACTTTACCCACATCCGACCCAACTAACAAGTAAACCATCTTTCCCGTTATAGTTCTACCCAGGTCCAAGAAGGCAAATACAAACCCCTCTGGGCGTGGCAGCGGCGCATCTTCTTCCATGTCTTCCAAGAAAAGGGAAAATAACTTTGCCTTTTCCCATCTTCTACAGTTCCCTTAATTTTGCATTTTTTTAGAATCTAACTCAACAGTCCCTTTATGGACTTCATCACTTCTAACCAAACACAAATCCAACTAAGAAGAGATAAAACTCAATAAAATGAATAGCGTCCCAGAGGAAAATCTCAACACCTGAGTAGACATAAAAAAGAATCAACTTAGCAGTTAAATAAAATATCACATCATCAACAGCAGAAGTTGCCGCCTGAATCGCCACGAACCCAACCACAAAAGCAGAGACAAATTTCCCTTGCTGAAAGAATCAGCCCAAATCCACTACATTCTTGTACTGCAATTCCAATTACACTTGCCTCGAAATTGCCGCAAATACAGTAACTTGGTGACTTTTGAGGAAGATGGAAAAATTGATTCTTTTCTATTGGGTGGACAAACTCACCAAGAGTAATTAAAAATAAATATGGTCTGTTTTGAGGTTGAAGTTTAATTCAGGTGACATAGTACTTTGCTGGGTTTTGAGGAAACTGGAACAGTATTTGTTTTTTAATCATAATGTTGAGTTTATTTAATTTGGTTCGGATTTTAATTTGATGGGTTTGCGGTCGGATTCATTCTAACCAATAAAAGAATGTTGATGGTTATTTTATCTCCAATAACTATATTGCAAGTACTTGTAAACCAAAAATACATTCACAGATTATAATTAAAGTAGTCTTTTTCTAATCAGAAGAATTATTTTCACCCGTGTTTTCTTTCTTTGGTATCTTGATGATTGAACAAGCTAACTGTGTCTTGATATTACCCCACTTGATTTGTTTGATATTTTAACTGATTTTCTTGAGAAAGGAGCTAGCTAATTATAGGTTCTGCAATTTCAATCTACAGTTAGGTACTCCAACTACTGGAGAAAGGGTATCAGAAGGTTTTGTAGCAGTGCCGTGGTGCATGAAGAGCCAATCACTCCACCTGTTGAGGTTAAATATAATCAGCTTCTCATTAATGGACAGTTTGTTGATGCAGCCTCAGGTTGACCTAAAGTCTTTTCATTTATATGTTATTTCTTCTATAAATCTCAAGTGTAATATGGAGAATTCTACGTCTTCAGGGAAGACATTTCCTACATTTGACCCTCGAACAGGCGAAGCTATTACTACGGTTGCGGAGGCCGACACTGAAGATGTCAACCGTGCAGTCTTTGCTGCCCGTAAAGCATTTGATGAAGGACCATGGCCTAAAATGACTTGTGCAGTAACCGAACTTTCTTATCTTTCCATATCCTCTTCCTTGTCCCAACAGTGAGAGGCGGATTTAGAATTTGAACTTAACATGTTCAACCTTTAAGGTTCTTATCGCTGAACACATTGATCTATCGGACATACGTGTTTAGATTTTAATATTCTCTCATTTTAGTACTTTCACATATATATTTATTTCCTGTATTATATGGTCCCTCTACCGAAGTTAATTTCTCAGTTGGTCGTTCAACTAATAGTAATTATTTGAGTAATATAAGTCACTTTCTTTGTTGAAGAAAATTGGAATCAAGTTGAAAAATGACTTCTTGAGATAATAACTATTTAGCAAAGTGACCATATGAGAAATCAATCCGCCTCTGCAGACAACTACAGCTTGTTTAAACTCCCAGTCTTACTTAAGCATGTACAATAATGTACTTACTTAACCAAATATTTCCAGGAAAGGTCATGTATAATGTTGCAGTTTGCTGATTTGCTTGAGAGGCACAGTGATGAACTTGCAGCACTTGAGACTTGGGATAAGGGAAAGCCTTACGAACAAGCTGCAAATGAAGAAATACCAATGCTCATTCGTCTTTTCAGATACTATGCT</genome_strand>
        <mrna_strand>AGGTCCTCTAAGATTTCTGTAAGCAACTGGGAAAATTTCT..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTAGGTACTCCAACTACTATGGAAAGGGTATCAGAAGGTTTTGTATCACTGCCTTGGTGCATGAAGAGCCAATCACTCCACCTGTTGAGGTTAAATATAATCAGCTTCTCATTAATGGACAGTTTGTTGATGCAGCCTCAG...............................................................................GGAAGACATTTCCTACATTTGACCCTCGAACAGGCGAAGCTATTACTACGGTTGCGGAGGCCGACACTGAAGATGTCAACCGTGCAGTCTTTGCTGCCCGTAAAGCATCCTAACACTGACCATGGCCTAAAATGACTTGTGCA...............................................................................................................................................................................................................................................................................................................................................................................................................................................................GAAAGGTCATGTATAATGTTGCAGTTTGCTGATTTGCTTGAGAGGCACAGTGATGAACTTGCAGCACTTGAGACTTGGGATAAGGGAAAGCCTTACGAACAAGCTGCAAATGAAGAAATACCAATGCTCATTCGTCTTTTCAGATACTATGCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0236E02-u8qcS/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E726097" ref_strand="+" ref_description="SGN-E726097 [LA10BC03]">
      <seq>gaacaattttgaatgctctctctttatgtaaacattatgctttgtatgaaataaaggtcctctaagatttctgtaagcaactttgaaaatttctttaggtactccaactactggagaaagggtatcagaaggttttgtagcagtgccgtggtgcatgaagagccaatcactccacctgttgaggttaaatataatcagcttctcattaatggacagtttgttgatgcagcctcagggaagacatttcctacatttgaccctcgaacaggcgaagctattactacggttgcggaggccgacactgaagatgtcaaccgtgcagtctttgctgcccgtaaagcatttgatgaaggaccatggcctaaaatgacttgaaaggtcatgtataatgttgcagtttgctgatttgcttgagaggcacagtgatgaacttgcagcacttgagacttgggataagggaaagccttacgaacaagctgcaaatgaagaaataccaatgctcattcgtcttttcaatactat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0236E02-u8qcS/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0236E02.1" temp_strand="-" temp_description="C02HBa0236E02.1  AC215430.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0236E02 sequenced_by:kribb upload_account_name:korea">
        <position start="123445" stop="120110"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="123145" g_stop="123052" g_length="94"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="94" r_length="94" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="123051" i_stop="121370" i_length="1682">
            <donor d_prob="0.000" d_score="1.00"/>
            <acceptor a_prob="0.901" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="121369" g_stop="121229" g_length="141"/>
          <reference_exon_boundary r_type="cDNA" r_start="95" r_stop="235" r_length="141" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="121228" i_stop="121150" i_length="79">
            <donor d_prob="0.986" d_score="1.00"/>
            <acceptor a_prob="0.750" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="121149" g_stop="121012" g_length="138"/>
          <reference_exon_boundary r_type="cDNA" r_start="236" r_stop="373" r_length="138" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="121011" i_stop="120560" i_length="452">
            <donor d_prob="0.000" d_score="1.00"/>
            <acceptor a_prob="0.922" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="120559" g_stop="120410" g_length="150"/>
          <reference_exon_boundary r_type="cDNA" r_start="374" r_stop="522" r_length="149" r_score="0.993"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0236E02.1" gen_strand="-" ref_id="SGN-E726097" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>523</cumulative_length_of_scored_exons>
        <coverage percentage="1.002" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0236E02.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E726097" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="123145" e_stop="123052"/>
          <exon e_start="121369" e_stop="121229"/>
          <exon e_start="121149" e_stop="121012"/>
          <exon e_start="120559" e_stop="120410"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAACAATTTTGAATGCTCTCTCTTTATGTAAACATTATGCTTTGTATGAAATAAAGGTCCTCTAAGATTTCTGTAAGCAACTTTGAAAATTTCTGTAAGTTCTTCTTTATTTAAATTCCGCAACTATGAAAATGGTAAGGAAAGAGTATGATTGTAGCTTCTCTTGTTCACTGATGACATGACAGTGTGAATAATTTTGATCAACTATGATTTAATCAGTTAAAAGTAATCTATTTATCTTATTTTTGAAATGACTAGTTTGGCTTTAGATGGTACTATAAAGTAGACCTCATTATTTTAGGTTACGCAGAGTGTTTACTTGATTGTCTAAACAAAATTTAGAAATAAATTTTGAACCTAAGCTAAACACAGAGTTAAAGGGTTTCATTTAATCATTAAATTTGTCCTCCGTTATAGTTCTTTTAAGGGAAAGCTCCGAATCAACCCATTTTATCCAAAAATGAAAAGATAAAACCACCCGCCCCTAATATAACCCGCATCCGACCAACTAACATGTAAAACCCACCCAAGTCCAAAGAAAGCAAAACTAACCCTTTAACGGCGGCGGCGGCGGCAGCGACGGCGCAACTTTTTTCCATGAGTTGATTTCCAAGAAAATGGAAATAACTTTGCCCGCATTGGATCTAACTAACAACTTATTGTTCTACCCAAGTCCAAGAAATCAAAAACAAACCCATATAATGGTAGCGTGGCGGCGGCGCGTCTTCTTCAATGGTTTCCAGGAGAAGGGGAAATAACTTTACCCACATCCGACCCAACTAACAAGTAAACCATCTTTCCCGTTATAGTTCTACCCAGGTCCAAGAAGGCAAATACAAACCCCTCTGGGCGTGGCAGCGGCGCATCTTCTTCCATGTCTTCCAAGAAAAGGGAAAATAACTTTGCCTTTTCCCATCTTCTACAGTTCCCTTAATTTTGCATTTTTTTAGAATCTAACTCAACAGTCCCTTTATGGACTTCATCACTTCTAACCAAACACAAATCCAACTAAGAAGAGATAAAACTCAATAAAATGAATAGCGTCCCAGAGGAAAATCTCAACACCTGAGTAGACATAAAAAAGAATCAACTTAGCAGTTAAATAAAATATCACATCATCAACAGCAGAAGTTGCCGCCTGAATCGCCACGAACCCAACCACAAAAGCAGAGACAAATTTCCCTTGCTGAAAGAATCAGCCCAAATCCACTACATTCTTGTACTGCAATTCCAATTACACTTGCCTCGAAATTGCCGCAAATACAGTAACTTGGTGACTTTTGAGGAAGATGGAAAAATTGATTCTTTTCTATTGGGTGGACAAACTCACCAAGAGTAATTAAAAATAAATATGGTCTGTTTTGAGGTTGAAGTTTAATTCAGGTGACATAGTACTTTGCTGGGTTTTGAGGAAACTGGAACAGTATTTGTTTTTTAATCATAATGTTGAGTTTATTTAATTTGGTTCGGATTTTAATTTGATGGGTTTGCGGTCGGATTCATTCTAACCAATAAAAGAATGTTGATGGTTATTTTATCTCCAATAACTATATTGCAAGTACTTGTAAACCAAAAATACATTCACAGATTATAATTAAAGTAGTCTTTTTCTAATCAGAAGAATTATTTTCACCCGTGTTTTCTTTCTTTGGTATCTTGATGATTGAACAAGCTAACTGTGTCTTGATATTACCCCACTTGATTTGTTTGATATTTTAACTGATTTTCTTGAGAAAGGAGCTAGCTAATTATAGGTTCTGCAATTTCAATCTACAGTTAGGTACTCCAACTACTGGAGAAAGGGTATCAGAAGGTTTTGTAGCAGTGCCGTGGTGCATGAAGAGCCAATCACTCCACCTGTTGAGGTTAAATATAATCAGCTTCTCATTAATGGACAGTTTGTTGATGCAGCCTCAGGTTGACCTAAAGTCTTTTCATTTATATGTTATTTCTTCTATAAATCTCAAGTGTAATATGGAGAATTCTACGTCTTCAGGGAAGACATTTCCTACATTTGACCCTCGAACAGGCGAAGCTATTACTACGGTTGCGGAGGCCGACACTGAAGATGTCAACCGTGCAGTCTTTGCTGCCCGTAAAGCATTTGATGAAGGACCATGGCCTAAAATGACTTGTGCAGTAACCGAACTTTCTTATCTTTCCATATCCTCTTCCTTGTCCCAACAGTGAGAGGCGGATTTAGAATTTGAACTTAACATGTTCAACCTTTAAGGTTCTTATCGCTGAACACATTGATCTATCGGACATACGTGTTTAGATTTTAATATTCTCTCATTTTAGTACTTTCACATATATATTTATTTCCTGTATTATATGGTCCCTCTACCGAAGTTAATTTCTCAGTTGGTCGTTCAACTAATAGTAATTATTTGAGTAATATAAGTCACTTTCTTTGTTGAAGAAAATTGGAATCAAGTTGAAAAATGACTTCTTGAGATAATAACTATTTAGCAAAGTGACCATATGAGAAATCAATCCGCCTCTGCAGACAACTACAGCTTGTTTAAACTCCCAGTCTTACTTAAGCATGTACAATAATGTACTTACTTAACCAAATATTTCCAGGAAAGGTCATGTATAATGTTGCAGTTTGCTGATTTGCTTGAGAGGCACAGTGATGAACTTGCAGCACTTGAGACTTGGGATAAGGGAAAGCCTTACGAACAAGCTGCAAATGAAGAAATACCAATGCTCATTCGTCTTTTCAGATACTAT</genome_strand>
        <mrna_strand>GAACAATTTTGAATGCTCTCTCTTTATGTAAACATTATGCTTTGTATGAAATAAAGGTCCTCTAAGATTTCTGTAAGCAACTTTGAAAATTTCT..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTAGGTACTCCAACTACTGGAGAAAGGGTATCAGAAGGTTTTGTAGCAGTGCCGTGGTGCATGAAGAGCCAATCACTCCACCTGTTGAGGTTAAATATAATCAGCTTCTCATTAATGGACAGTTTGTTGATGCAGCCTCAG...............................................................................GGAAGACATTTCCTACATTTGACCCTCGAACAGGCGAAGCTATTACTACGGTTGCGGAGGCCGACACTGAAGATGTCAACCGTGCAGTCTTTGCTGCCCGTAAAGCATTTGATGAAGGACCATGGCCTAAAATGACTT....................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAAAGGTCATGTATAATGTTGCAGTTTGCTGATTTGCTTGAGAGGCACAGTGATGAACTTGCAGCACTTGAGACTTGGGATAAGGGAAAGCCTTACGAACAAGCTGCAAATGAAGAAATACCAATGCTCATTCGTCTTTTCA-ATACTAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0236E02-u8qcS/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E261296" ref_strand="+" ref_description="SGN-E261296 [cLEG-68-O17]">
      <seq>aatcaagctgaaaaatgacttcttgagataatagctatttagcaaagtgaccatatgagaaatcaatccgcctctgcagacaactacagcttgtttaaactcccagtcttacttaagcatgtacaataatgtacttacttaaccaaatatttccaggaaaggtcatgtataatgttgcagtttgctgatttgcttgagaggcacagtgatgaacttgcagcacttgagacttgggataagggaaagccttacgatcaacctgcaaacgaagaaatac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0236E02-u8qcS/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0236E02.1" temp_strand="-" temp_description="C02HBa0236E02.1  AC215430.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0236E02 sequenced_by:kribb upload_account_name:korea">
        <position start="121015" stop="120139"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="120715" g_stop="120439" g_length="277"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="277" r_length="277" r_score="0.982"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0236E02.1" gen_strand="-" ref_id="SGN-E261296" ref_strand="+">
        <total_alignment_score>0.982</total_alignment_score>
        <cumulative_length_of_scored_exons>277</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0236E02.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E261296" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="120715" e_stop="120439"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AATCAAGTTGAAAAATGACTTCTTGAGATAATAACTATTTAGCAAAGTGACCATATGAGAAATCAATCCGCCTCTGCAGACAACTACAGCTTGTTTAAACTCCCAGTCTTACTTAAGCATGTACAATAATGTACTTACTTAACCAAATATTTCCAGGAAAGGTCATGTATAATGTTGCAGTTTGCTGATTTGCTTGAGAGGCACAGTGATGAACTTGCAGCACTTGAGACTTGGGATAAGGGAAAGCCTTACGAACAAGCTGCAAATGAAGAAATAC</genome_strand>
        <mrna_strand>AATCAAGCTGAAAAATGACTTCTTGAGATAATAGCTATTTAGCAAAGTGACCATATGAGAAATCAATCCGCCTCTGCAGACAACTACAGCTTGTTTAAACTCCCAGTCTTACTTAAGCATGTACAATAATGTACTTACTTAACCAAATATTTCCAGGAAAGGTCATGTATAATGTTGCAGTTTGCTGATTTGCTTGAGAGGCACAGTGATGAACTTGCAGCACTTGAGACTTGGGATAAGGGAAAGCCTTACGATCAACCTGCAAACGAAGAAATAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0236E02-u8qcS/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E324375" ref_strand="+" ref_description="SGN-E324375 [cTOC-6-H13]">
      <seq>gaccatggcctaaaatgggtggtgcagtaaccgaactttctggggtttccatatcctcttccttggcccaacagtgagaggcggatttagaatttgaacttaacatgttcaacctttaaggttcttatcgctgaacacattgatctatcggacatacgtgtttagattttaatattctctcattttagtactttcacatatatatttatttcctgtattatatggtccctctaccgaagttaatttctcagttggtcgttcaactaatagtaattatttgagtgatataagtcactttctttgttgaagaaaattggaatcaagttgaaaaatgacttcttgagataataactatttagcaaagtgaccatatgagaaatcaatccgcctctgcagacaactacagcttgtttaaactcccagtcttacttaagcatgtacaataatgtacttacttaaccaaatatttccaggaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0236E02-u8qcS/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0236E02.1" temp_strand="-" temp_description="C02HBa0236E02.1  AC215430.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0236E02 sequenced_by:kribb upload_account_name:korea">
        <position start="121332" stop="120257"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="121032" g_stop="120557" g_length="476"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="476" r_length="476" r_score="0.981"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0236E02.1" gen_strand="-" ref_id="SGN-E324375" ref_strand="+">
        <total_alignment_score>0.981</total_alignment_score>
        <cumulative_length_of_scored_exons>476</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0236E02.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E324375" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="121032" e_stop="120557"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GACCATGGCCTAAAATGACTTGTGCAGTAACCGAACTTTCTTATCTTTCCATATCCTCTTCCTTGTCCCAACAGTGAGAGGCGGATTTAGAATTTGAACTTAACATGTTCAACCTTTAAGGTTCTTATCGCTGAACACATTGATCTATCGGACATACGTGTTTAGATTTTAATATTCTCTCATTTTAGTACTTTCACATATATATTTATTTCCTGTATTATATGGTCCCTCTACCGAAGTTAATTTCTCAGTTGGTCGTTCAACTAATAGTAATTATTTGAGTAATATAAGTCACTTTCTTTGTTGAAGAAAATTGGAATCAAGTTGAAAAATGACTTCTTGAGATAATAACTATTTAGCAAAGTGACCATATGAGAAATCAATCCGCCTCTGCAGACAACTACAGCTTGTTTAAACTCCCAGTCTTACTTAAGCATGTACAATAATGTACTTACTTAACCAAATATTTCCAGGAA</genome_strand>
        <mrna_strand>GACCATGGCCTAAAATGGGTGGTGCAGTAACCGAACTTTCTGGGGTTTCCATATCCTCTTCCTTGGCCCAACAGTGAGAGGCGGATTTAGAATTTGAACTTAACATGTTCAACCTTTAAGGTTCTTATCGCTGAACACATTGATCTATCGGACATACGTGTTTAGATTTTAATATTCTCTCATTTTAGTACTTTCACATATATATTTATTTCCTGTATTATATGGTCCCTCTACCGAAGTTAATTTCTCAGTTGGTCGTTCAACTAATAGTAATTATTTGAGTGATATAAGTCACTTTCTTTGTTGAAGAAAATTGGAATCAAGTTGAAAAATGACTTCTTGAGATAATAACTATTTAGCAAAGTGACCATATGAGAAATCAATCCGCCTCTGCAGACAACTACAGCTTGTTTAAACTCCCAGTCTTACTTAAGCATGTACAATAATGTACTTACTTAACCAAATATTTCCAGGAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0236E02-u8qcS/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E336972" ref_strand="+" ref_description="SGN-E336972 [cTOE-5-D2]">
      <seq>acggttgcggaggccgacactgaagatgtcaaccgtgcagtctttgctgcccgtaaagcatttgatgaaggaccatggcctaaaatgacttgtgcagtaaccgaactttcttatctttccatatcctcttccttgtcccaacagtgagaggcggatttagaatttgaacttaacatgttcaacctttaaggttcttatcgctgaacacattgatctatcggacatacgtgtttagattttaatattctctcattttagtactttcacatatatatttatttcctgtattatatggtccctctaccgaagttaatttctcagttggtcgttcaactaatagtaattatttgagtaatataagtcactttctttgttgaagaaaattggaatcaagttgaaaaatga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0236E02-u8qcS/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0236E02.1" temp_strand="-" temp_description="C02HBa0236E02.1  AC215430.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0236E02 sequenced_by:kribb upload_account_name:korea">
        <position start="121402" stop="120398"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="121102" g_stop="120698" g_length="405"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="405" r_length="405" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0236E02.1" gen_strand="-" ref_id="SGN-E336972" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>405</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0236E02.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E336972" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="121102" e_stop="120698"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACGGTTGCGGAGGCCGACACTGAAGATGTCAACCGTGCAGTCTTTGCTGCCCGTAAAGCATTTGATGAAGGACCATGGCCTAAAATGACTTGTGCAGTAACCGAACTTTCTTATCTTTCCATATCCTCTTCCTTGTCCCAACAGTGAGAGGCGGATTTAGAATTTGAACTTAACATGTTCAACCTTTAAGGTTCTTATCGCTGAACACATTGATCTATCGGACATACGTGTTTAGATTTTAATATTCTCTCATTTTAGTACTTTCACATATATATTTATTTCCTGTATTATATGGTCCCTCTACCGAAGTTAATTTCTCAGTTGGTCGTTCAACTAATAGTAATTATTTGAGTAATATAAGTCACTTTCTTTGTTGAAGAAAATTGGAATCAAGTTGAAAAATGA</genome_strand>
        <mrna_strand>ACGGTTGCGGAGGCCGACACTGAAGATGTCAACCGTGCAGTCTTTGCTGCCCGTAAAGCATTTGATGAAGGACCATGGCCTAAAATGACTTGTGCAGTAACCGAACTTTCTTATCTTTCCATATCCTCTTCCTTGTCCCAACAGTGAGAGGCGGATTTAGAATTTGAACTTAACATGTTCAACCTTTAAGGTTCTTATCGCTGAACACATTGATCTATCGGACATACGTGTTTAGATTTTAATATTCTCTCATTTTAGTACTTTCACATATATATTTATTTCCTGTATTATATGGTCCCTCTACCGAAGTTAATTTCTCAGTTGGTCGTTCAACTAATAGTAATTATTTGAGTAATATAAGTCACTTTCTTTGTTGAAGAAAATTGGAATCAAGTTGAAAAATGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0236E02-u8qcS/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E271992" ref_strand="+" ref_description="SGN-E271992 [cLEM-8-K22]">
      <seq>attttgaatgctctctctttatgtaaacattatgctttgtgtgaaataaaggtcctctaagatttctgtaagcaactttgaaaatttctttaggtactccaactactggagaaagggtatcataaggttttgtagcagtgccgtggtgcatgaagagccaatcactccacctgttgaggttaaatataatcaacttctcattaatggacagtttgttgatgcatcctcaaggaagacatttcctacatttgaccctcgaacaggcgaagctattactacggttgcggaggccgacactgaatatgtcaaccgtgcagtctttgctgcccgtaaagcatttgatgaaagaccatggcctaaaatgacttgtgcagtaaccgaactttcttatctttccatatcctcttccttgtcccaacagtgagaggcggatttagaatttgaacttaacatgttcaacctttaaagttcttatcgctgaacacattgatctatctgacatacgtgtttagattttaatattctctcattttagtactttcacatatatatttatttcctgtattata</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0236E02-u8qcS/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0236E02.1" temp_strand="-" temp_description="C02HBa0236E02.1  AC215430.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0236E02 sequenced_by:kribb upload_account_name:korea">
        <position start="123440" stop="120511"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="123140" g_stop="123052" g_length="89"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="89" r_length="89" r_score="0.989"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="123051" i_stop="121370" i_length="1682">
            <donor d_prob="0.000" d_score="0.98"/>
            <acceptor a_prob="0.901" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="121369" g_stop="121229" g_length="141"/>
          <reference_exon_boundary r_type="cDNA" r_start="90" r_stop="230" r_length="141" r_score="0.972"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="121228" i_stop="121150" i_length="79">
            <donor d_prob="0.986" d_score="0.94"/>
            <acceptor a_prob="0.750" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="121149" g_stop="120811" g_length="339"/>
          <reference_exon_boundary r_type="cDNA" r_start="231" r_stop="569" r_length="339" r_score="0.988"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0236E02.1" gen_strand="-" ref_id="SGN-E271992" ref_strand="+">
        <total_alignment_score>0.984</total_alignment_score>
        <cumulative_length_of_scored_exons>569</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0236E02.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E271992" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="123140" e_stop="123052"/>
          <exon e_start="121369" e_stop="121229"/>
          <exon e_start="121149" e_stop="120811"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATTTTGAATGCTCTCTCTTTATGTAAACATTATGCTTTGTATGAAATAAAGGTCCTCTAAGATTTCTGTAAGCAACTTTGAAAATTTCTGTAAGTTCTTCTTTATTTAAATTCCGCAACTATGAAAATGGTAAGGAAAGAGTATGATTGTAGCTTCTCTTGTTCACTGATGACATGACAGTGTGAATAATTTTGATCAACTATGATTTAATCAGTTAAAAGTAATCTATTTATCTTATTTTTGAAATGACTAGTTTGGCTTTAGATGGTACTATAAAGTAGACCTCATTATTTTAGGTTACGCAGAGTGTTTACTTGATTGTCTAAACAAAATTTAGAAATAAATTTTGAACCTAAGCTAAACACAGAGTTAAAGGGTTTCATTTAATCATTAAATTTGTCCTCCGTTATAGTTCTTTTAAGGGAAAGCTCCGAATCAACCCATTTTATCCAAAAATGAAAAGATAAAACCACCCGCCCCTAATATAACCCGCATCCGACCAACTAACATGTAAAACCCACCCAAGTCCAAAGAAAGCAAAACTAACCCTTTAACGGCGGCGGCGGCGGCAGCGACGGCGCAACTTTTTTCCATGAGTTGATTTCCAAGAAAATGGAAATAACTTTGCCCGCATTGGATCTAACTAACAACTTATTGTTCTACCCAAGTCCAAGAAATCAAAAACAAACCCATATAATGGTAGCGTGGCGGCGGCGCGTCTTCTTCAATGGTTTCCAGGAGAAGGGGAAATAACTTTACCCACATCCGACCCAACTAACAAGTAAACCATCTTTCCCGTTATAGTTCTACCCAGGTCCAAGAAGGCAAATACAAACCCCTCTGGGCGTGGCAGCGGCGCATCTTCTTCCATGTCTTCCAAGAAAAGGGAAAATAACTTTGCCTTTTCCCATCTTCTACAGTTCCCTTAATTTTGCATTTTTTTAGAATCTAACTCAACAGTCCCTTTATGGACTTCATCACTTCTAACCAAACACAAATCCAACTAAGAAGAGATAAAACTCAATAAAATGAATAGCGTCCCAGAGGAAAATCTCAACACCTGAGTAGACATAAAAAAGAATCAACTTAGCAGTTAAATAAAATATCACATCATCAACAGCAGAAGTTGCCGCCTGAATCGCCACGAACCCAACCACAAAAGCAGAGACAAATTTCCCTTGCTGAAAGAATCAGCCCAAATCCACTACATTCTTGTACTGCAATTCCAATTACACTTGCCTCGAAATTGCCGCAAATACAGTAACTTGGTGACTTTTGAGGAAGATGGAAAAATTGATTCTTTTCTATTGGGTGGACAAACTCACCAAGAGTAATTAAAAATAAATATGGTCTGTTTTGAGGTTGAAGTTTAATTCAGGTGACATAGTACTTTGCTGGGTTTTGAGGAAACTGGAACAGTATTTGTTTTTTAATCATAATGTTGAGTTTATTTAATTTGGTTCGGATTTTAATTTGATGGGTTTGCGGTCGGATTCATTCTAACCAATAAAAGAATGTTGATGGTTATTTTATCTCCAATAACTATATTGCAAGTACTTGTAAACCAAAAATACATTCACAGATTATAATTAAAGTAGTCTTTTTCTAATCAGAAGAATTATTTTCACCCGTGTTTTCTTTCTTTGGTATCTTGATGATTGAACAAGCTAACTGTGTCTTGATATTACCCCACTTGATTTGTTTGATATTTTAACTGATTTTCTTGAGAAAGGAGCTAGCTAATTATAGGTTCTGCAATTTCAATCTACAGTTAGGTACTCCAACTACTGGAGAAAGGGTATCAGAAGGTTTTGTAGCAGTGCCGTGGTGCATGAAGAGCCAATCACTCCACCTGTTGAGGTTAAATATAATCAGCTTCTCATTAATGGACAGTTTGTTGATGCAGCCTCAGGTTGACCTAAAGTCTTTTCATTTATATGTTATTTCTTCTATAAATCTCAAGTGTAATATGGAGAATTCTACGTCTTCAGGGAAGACATTTCCTACATTTGACCCTCGAACAGGCGAAGCTATTACTACGGTTGCGGAGGCCGACACTGAAGATGTCAACCGTGCAGTCTTTGCTGCCCGTAAAGCATTTGATGAAGGACCATGGCCTAAAATGACTTGTGCAGTAACCGAACTTTCTTATCTTTCCATATCCTCTTCCTTGTCCCAACAGTGAGAGGCGGATTTAGAATTTGAACTTAACATGTTCAACCTTTAAGGTTCTTATCGCTGAACACATTGATCTATCGGACATACGTGTTTAGATTTTAATATTCTCTCATTTTAGTACTTTCACATATATATTTATTTCCTGTATTATA</genome_strand>
        <mrna_strand>ATTTTGAATGCTCTCTCTTTATGTAAACATTATGCTTTGTGTGAAATAAAGGTCCTCTAAGATTTCTGTAAGCAACTTTGAAAATTTCT..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTAGGTACTCCAACTACTGGAGAAAGGGTATCATAAGGTTTTGTAGCAGTGCCGTGGTGCATGAAGAGCCAATCACTCCACCTGTTGAGGTTAAATATAATCAACTTCTCATTAATGGACAGTTTGTTGATGCATCCTCAA...............................................................................GGAAGACATTTCCTACATTTGACCCTCGAACAGGCGAAGCTATTACTACGGTTGCGGAGGCCGACACTGAATATGTCAACCGTGCAGTCTTTGCTGCCCGTAAAGCATTTGATGAAAGACCATGGCCTAAAATGACTTGTGCAGTAACCGAACTTTCTTATCTTTCCATATCCTCTTCCTTGTCCCAACAGTGAGAGGCGGATTTAGAATTTGAACTTAACATGTTCAACCTTTAAAGTTCTTATCGCTGAACACATTGATCTATCTGACATACGTGTTTAGATTTTAATATTCTCTCATTTTAGTACTTTCACATATATATTTATTTCCTGTATTATA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0236E02-u8qcS/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E256721" ref_strand="+" ref_description="SGN-E256721 [cLEG-40-D22]">
      <seq>aattttgaatgctctctctttatgtaaacattatgctttgtatgaaataaaggtcctctaagatttctgtaagcaactttgaaaatttctttaggtactccaactactggagaaagggtatcagaaggttttgtagcagtgccgtggtgcatgaagagccaatcactccacctgttgaggttaaatataatcagcttctcattaatggacagtttgttgatgcagcctcagggaagacatttcctacatttgaccctcgaacaggcgaagctattactacggttgcggaggccgacactgaagatgtcaaccgtgcagtctttgctgcccgtaaagcatttgatgaaggaccatggcctaaaatgacttgtgcagtaaccgaactttcttatctttccatatcctcttccttgtcccaacagtgagaggcggatttagaatttgaacttaacatgttcaacctttaaggttcttatcgctgaacacattgatctatcggacatacgtgtttagattttaatattctctcattttagtactttcacatatat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0236E02-u8qcS/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0236E02.1" temp_strand="-" temp_description="C02HBa0236E02.1  AC215430.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0236E02 sequenced_by:kribb upload_account_name:korea">
        <position start="123441" stop="120530"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="123141" g_stop="123052" g_length="90"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="90" r_length="90" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="123051" i_stop="121370" i_length="1682">
            <donor d_prob="0.000" d_score="1.00"/>
            <acceptor a_prob="0.901" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="121369" g_stop="121229" g_length="141"/>
          <reference_exon_boundary r_type="cDNA" r_start="91" r_stop="231" r_length="141" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="121228" i_stop="121150" i_length="79">
            <donor d_prob="0.986" d_score="1.00"/>
            <acceptor a_prob="0.750" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="121149" g_stop="120830" g_length="320"/>
          <reference_exon_boundary r_type="cDNA" r_start="232" r_stop="551" r_length="320" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0236E02.1" gen_strand="-" ref_id="SGN-E256721" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>551</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0236E02.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E256721" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="123141" e_stop="123052"/>
          <exon e_start="121369" e_stop="121229"/>
          <exon e_start="121149" e_stop="120830"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AATTTTGAATGCTCTCTCTTTATGTAAACATTATGCTTTGTATGAAATAAAGGTCCTCTAAGATTTCTGTAAGCAACTTTGAAAATTTCTGTAAGTTCTTCTTTATTTAAATTCCGCAACTATGAAAATGGTAAGGAAAGAGTATGATTGTAGCTTCTCTTGTTCACTGATGACATGACAGTGTGAATAATTTTGATCAACTATGATTTAATCAGTTAAAAGTAATCTATTTATCTTATTTTTGAAATGACTAGTTTGGCTTTAGATGGTACTATAAAGTAGACCTCATTATTTTAGGTTACGCAGAGTGTTTACTTGATTGTCTAAACAAAATTTAGAAATAAATTTTGAACCTAAGCTAAACACAGAGTTAAAGGGTTTCATTTAATCATTAAATTTGTCCTCCGTTATAGTTCTTTTAAGGGAAAGCTCCGAATCAACCCATTTTATCCAAAAATGAAAAGATAAAACCACCCGCCCCTAATATAACCCGCATCCGACCAACTAACATGTAAAACCCACCCAAGTCCAAAGAAAGCAAAACTAACCCTTTAACGGCGGCGGCGGCGGCAGCGACGGCGCAACTTTTTTCCATGAGTTGATTTCCAAGAAAATGGAAATAACTTTGCCCGCATTGGATCTAACTAACAACTTATTGTTCTACCCAAGTCCAAGAAATCAAAAACAAACCCATATAATGGTAGCGTGGCGGCGGCGCGTCTTCTTCAATGGTTTCCAGGAGAAGGGGAAATAACTTTACCCACATCCGACCCAACTAACAAGTAAACCATCTTTCCCGTTATAGTTCTACCCAGGTCCAAGAAGGCAAATACAAACCCCTCTGGGCGTGGCAGCGGCGCATCTTCTTCCATGTCTTCCAAGAAAAGGGAAAATAACTTTGCCTTTTCCCATCTTCTACAGTTCCCTTAATTTTGCATTTTTTTAGAATCTAACTCAACAGTCCCTTTATGGACTTCATCACTTCTAACCAAACACAAATCCAACTAAGAAGAGATAAAACTCAATAAAATGAATAGCGTCCCAGAGGAAAATCTCAACACCTGAGTAGACATAAAAAAGAATCAACTTAGCAGTTAAATAAAATATCACATCATCAACAGCAGAAGTTGCCGCCTGAATCGCCACGAACCCAACCACAAAAGCAGAGACAAATTTCCCTTGCTGAAAGAATCAGCCCAAATCCACTACATTCTTGTACTGCAATTCCAATTACACTTGCCTCGAAATTGCCGCAAATACAGTAACTTGGTGACTTTTGAGGAAGATGGAAAAATTGATTCTTTTCTATTGGGTGGACAAACTCACCAAGAGTAATTAAAAATAAATATGGTCTGTTTTGAGGTTGAAGTTTAATTCAGGTGACATAGTACTTTGCTGGGTTTTGAGGAAACTGGAACAGTATTTGTTTTTTAATCATAATGTTGAGTTTATTTAATTTGGTTCGGATTTTAATTTGATGGGTTTGCGGTCGGATTCATTCTAACCAATAAAAGAATGTTGATGGTTATTTTATCTCCAATAACTATATTGCAAGTACTTGTAAACCAAAAATACATTCACAGATTATAATTAAAGTAGTCTTTTTCTAATCAGAAGAATTATTTTCACCCGTGTTTTCTTTCTTTGGTATCTTGATGATTGAACAAGCTAACTGTGTCTTGATATTACCCCACTTGATTTGTTTGATATTTTAACTGATTTTCTTGAGAAAGGAGCTAGCTAATTATAGGTTCTGCAATTTCAATCTACAGTTAGGTACTCCAACTACTGGAGAAAGGGTATCAGAAGGTTTTGTAGCAGTGCCGTGGTGCATGAAGAGCCAATCACTCCACCTGTTGAGGTTAAATATAATCAGCTTCTCATTAATGGACAGTTTGTTGATGCAGCCTCAGGTTGACCTAAAGTCTTTTCATTTATATGTTATTTCTTCTATAAATCTCAAGTGTAATATGGAGAATTCTACGTCTTCAGGGAAGACATTTCCTACATTTGACCCTCGAACAGGCGAAGCTATTACTACGGTTGCGGAGGCCGACACTGAAGATGTCAACCGTGCAGTCTTTGCTGCCCGTAAAGCATTTGATGAAGGACCATGGCCTAAAATGACTTGTGCAGTAACCGAACTTTCTTATCTTTCCATATCCTCTTCCTTGTCCCAACAGTGAGAGGCGGATTTAGAATTTGAACTTAACATGTTCAACCTTTAAGGTTCTTATCGCTGAACACATTGATCTATCGGACATACGTGTTTAGATTTTAATATTCTCTCATTTTAGTACTTTCACATATAT</genome_strand>
        <mrna_strand>AATTTTGAATGCTCTCTCTTTATGTAAACATTATGCTTTGTATGAAATAAAGGTCCTCTAAGATTTCTGTAAGCAACTTTGAAAATTTCT..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTAGGTACTCCAACTACTGGAGAAAGGGTATCAGAAGGTTTTGTAGCAGTGCCGTGGTGCATGAAGAGCCAATCACTCCACCTGTTGAGGTTAAATATAATCAGCTTCTCATTAATGGACAGTTTGTTGATGCAGCCTCAG...............................................................................GGAAGACATTTCCTACATTTGACCCTCGAACAGGCGAAGCTATTACTACGGTTGCGGAGGCCGACACTGAAGATGTCAACCGTGCAGTCTTTGCTGCCCGTAAAGCATTTGATGAAGGACCATGGCCTAAAATGACTTGTGCAGTAACCGAACTTTCTTATCTTTCCATATCCTCTTCCTTGTCCCAACAGTGAGAGGCGGATTTAGAATTTGAACTTAACATGTTCAACCTTTAAGGTTCTTATCGCTGAACACATTGATCTATCGGACATACGTGTTTAGATTTTAATATTCTCTCATTTTAGTACTTTCACATATAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0236E02-u8qcS/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E258160" ref_strand="+" ref_description="SGN-E258160 [cLEG-49-K13]">
      <seq>ttttgaatgctctctctttatgtaaacattatgctttgtatgaaataaaggtcctctaagatttctgtaagcaactttgaaaatttctttaggtactccaactactggagaaagggtatcagaaggttttgtagcagtgccgtggtgcatgaaaagccaatcactccacctgttgagggtaaatataatcagcttctcattaatggacagtttgttgatgcaggctcagggaaagactttcctacatttggacctcgaacacgcgaagctattactacggttgcggaggccgacactgaagatgtcaaccgtgcagtctttgctgcccgtaaagcatttgatgaacgaccatggcctaaaatgacttgtgcagtaaccgaactttcttatctttccatatcctcttccttgtccccaca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0236E02-u8qcS/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0236E02.1" temp_strand="-" temp_description="C02HBa0236E02.1  AC215430.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0236E02 sequenced_by:kribb upload_account_name:korea">
        <position start="123439" stop="120660"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="123139" g_stop="123052" g_length="88"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="88" r_length="88" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="123051" i_stop="121370" i_length="1682">
            <donor d_prob="0.000" d_score="1.00"/>
            <acceptor a_prob="0.901" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="121369" g_stop="121229" g_length="141"/>
          <reference_exon_boundary r_type="cDNA" r_start="89" r_stop="229" r_length="141" r_score="0.979"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="121228" i_stop="121150" i_length="79">
            <donor d_prob="0.986" d_score="0.98"/>
            <acceptor a_prob="0.750" a_score="0.88"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="121149" g_stop="120960" g_length="190"/>
          <reference_exon_boundary r_type="cDNA" r_start="230" r_stop="419" r_length="190" r_score="0.958"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0236E02.1" gen_strand="-" ref_id="SGN-E258160" ref_strand="+">
        <total_alignment_score>0.974</total_alignment_score>
        <cumulative_length_of_scored_exons>419</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0236E02.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E258160" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="123139" e_stop="123052"/>
          <exon e_start="121369" e_stop="121229"/>
          <exon e_start="121149" e_stop="120960"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTTGAATGCTCTCTCTTTATGTAAACATTATGCTTTGTATGAAATAAAGGTCCTCTAAGATTTCTGTAAGCAACTTTGAAAATTTCTGTAAGTTCTTCTTTATTTAAATTCCGCAACTATGAAAATGGTAAGGAAAGAGTATGATTGTAGCTTCTCTTGTTCACTGATGACATGACAGTGTGAATAATTTTGATCAACTATGATTTAATCAGTTAAAAGTAATCTATTTATCTTATTTTTGAAATGACTAGTTTGGCTTTAGATGGTACTATAAAGTAGACCTCATTATTTTAGGTTACGCAGAGTGTTTACTTGATTGTCTAAACAAAATTTAGAAATAAATTTTGAACCTAAGCTAAACACAGAGTTAAAGGGTTTCATTTAATCATTAAATTTGTCCTCCGTTATAGTTCTTTTAAGGGAAAGCTCCGAATCAACCCATTTTATCCAAAAATGAAAAGATAAAACCACCCGCCCCTAATATAACCCGCATCCGACCAACTAACATGTAAAACCCACCCAAGTCCAAAGAAAGCAAAACTAACCCTTTAACGGCGGCGGCGGCGGCAGCGACGGCGCAACTTTTTTCCATGAGTTGATTTCCAAGAAAATGGAAATAACTTTGCCCGCATTGGATCTAACTAACAACTTATTGTTCTACCCAAGTCCAAGAAATCAAAAACAAACCCATATAATGGTAGCGTGGCGGCGGCGCGTCTTCTTCAATGGTTTCCAGGAGAAGGGGAAATAACTTTACCCACATCCGACCCAACTAACAAGTAAACCATCTTTCCCGTTATAGTTCTACCCAGGTCCAAGAAGGCAAATACAAACCCCTCTGGGCGTGGCAGCGGCGCATCTTCTTCCATGTCTTCCAAGAAAAGGGAAAATAACTTTGCCTTTTCCCATCTTCTACAGTTCCCTTAATTTTGCATTTTTTTAGAATCTAACTCAACAGTCCCTTTATGGACTTCATCACTTCTAACCAAACACAAATCCAACTAAGAAGAGATAAAACTCAATAAAATGAATAGCGTCCCAGAGGAAAATCTCAACACCTGAGTAGACATAAAAAAGAATCAACTTAGCAGTTAAATAAAATATCACATCATCAACAGCAGAAGTTGCCGCCTGAATCGCCACGAACCCAACCACAAAAGCAGAGACAAATTTCCCTTGCTGAAAGAATCAGCCCAAATCCACTACATTCTTGTACTGCAATTCCAATTACACTTGCCTCGAAATTGCCGCAAATACAGTAACTTGGTGACTTTTGAGGAAGATGGAAAAATTGATTCTTTTCTATTGGGTGGACAAACTCACCAAGAGTAATTAAAAATAAATATGGTCTGTTTTGAGGTTGAAGTTTAATTCAGGTGACATAGTACTTTGCTGGGTTTTGAGGAAACTGGAACAGTATTTGTTTTTTAATCATAATGTTGAGTTTATTTAATTTGGTTCGGATTTTAATTTGATGGGTTTGCGGTCGGATTCATTCTAACCAATAAAAGAATGTTGATGGTTATTTTATCTCCAATAACTATATTGCAAGTACTTGTAAACCAAAAATACATTCACAGATTATAATTAAAGTAGTCTTTTTCTAATCAGAAGAATTATTTTCACCCGTGTTTTCTTTCTTTGGTATCTTGATGATTGAACAAGCTAACTGTGTCTTGATATTACCCCACTTGATTTGTTTGATATTTTAACTGATTTTCTTGAGAAAGGAGCTAGCTAATTATAGGTTCTGCAATTTCAATCTACAGTTAGGTACTCCAACTACTGGAGAAAGGGTATCAGAAGGTTTTGTAGCAGTGCCGTGGTGCATGAAGAGCCAATCACTCCACCTGTTGAGGTTAAATATAATCAGCTTCTCATTAATGGACAGTTTGTTGATGCAGCCTCAGGTTGACCTAAAGTCTTTTCATTTATATGTTATTTCTTCTATAAATCTCAAGTGTAATATGGAGAATTCTACGTCTTCAGGG-AAGACATTTCCTACATTTGACCCTCGAACAGGCGAAGCTATTACTACGGTTGCGGAGGCCGACACTGAAGATGTCAACCGTGCAGTCTTTGCTGCCCGTAAAGCATTTGATGAAGGACCATGGCCTAAAATGACTTGTGCAGTAACCGAACTTTCTTATCTTTCCATATCCTCTTCCTTGTCCCAACA</genome_strand>
        <mrna_strand>TTTTGAATGCTCTCTCTTTATGTAAACATTATGCTTTGTATGAAATAAAGGTCCTCTAAGATTTCTGTAAGCAACTTTGAAAATTTCT..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTAGGTACTCCAACTACTGGAGAAAGGGTATCAGAAGGTTTTGTAGCAGTGCCGTGGTGCATGAAAAGCCAATCACTCCACCTGTTGAGGGTAAATATAATCAGCTTCTCATTAATGGACAGTTTGTTGATGCAGGCTCAG...............................................................................GGAAAGAC-TTTCCTACATTTGGACCTCGAACACGCGAAGCTATTACTACGGTTGCGGAGGCCGACACTGAAGATGTCAACCGTGCAGTCTTTGCTGCCCGTAAAGCATTTGATGAACGACCATGGCCTAAAATGACTTGTGCAGTAACCGAACTTTCTTATCTTTCCATATCCTCTTCCTTGTCCCCACA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0236E02-u8qcS/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E217486" ref_strand="-" ref_description="SGN-E217486 [cLEL-21-F2](-)">
      <seq>tttggaatgctctctctttatgtgaacattatgctttgtatgaaataaaggtcctctaagatttctgtaagcaactttgaaaatttctttaggaactccaactactggagaaagggtatcagaaggttttgtagcaatgccgtggtgcatgaagagccaatcactccacctgttgaggttaaatataatcagcttctcattaatggacagtttgttgatgcagcctcagggaagacatttcctacatttgaccctcgaacaggcgaagctattactacggttgcggaggccgacactgaatatgtaaaccgtgcagtctttgctgcccgtaaagcatttgatgaaggaccat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0236E02-u8qcS/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0236E02.1" temp_strand="-" temp_description="C02HBa0236E02.1  AC215430.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0236E02 sequenced_by:kribb upload_account_name:korea">
        <position start="123439" stop="120727"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="123139" g_stop="123052" g_length="88"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="88" r_length="88" r_score="0.977"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="123051" i_stop="121370" i_length="1682">
            <donor d_prob="0.000" d_score="1.00"/>
            <acceptor a_prob="0.901" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="121369" g_stop="121229" g_length="141"/>
          <reference_exon_boundary r_type="cDNA" r_start="89" r_stop="229" r_length="141" r_score="0.986"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="121228" i_stop="121150" i_length="79">
            <donor d_prob="0.986" d_score="1.00"/>
            <acceptor a_prob="0.750" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="121149" g_stop="121027" g_length="123"/>
          <reference_exon_boundary r_type="cDNA" r_start="230" r_stop="352" r_length="123" r_score="0.984"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0236E02.1" gen_strand="-" ref_id="SGN-E217486" ref_strand="-">
        <total_alignment_score>0.983</total_alignment_score>
        <cumulative_length_of_scored_exons>352</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0236E02.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E217486" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="123139" e_stop="123052"/>
          <exon e_start="121369" e_stop="121229"/>
          <exon e_start="121149" e_stop="121027"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTTGAATGCTCTCTCTTTATGTAAACATTATGCTTTGTATGAAATAAAGGTCCTCTAAGATTTCTGTAAGCAACTTTGAAAATTTCTGTAAGTTCTTCTTTATTTAAATTCCGCAACTATGAAAATGGTAAGGAAAGAGTATGATTGTAGCTTCTCTTGTTCACTGATGACATGACAGTGTGAATAATTTTGATCAACTATGATTTAATCAGTTAAAAGTAATCTATTTATCTTATTTTTGAAATGACTAGTTTGGCTTTAGATGGTACTATAAAGTAGACCTCATTATTTTAGGTTACGCAGAGTGTTTACTTGATTGTCTAAACAAAATTTAGAAATAAATTTTGAACCTAAGCTAAACACAGAGTTAAAGGGTTTCATTTAATCATTAAATTTGTCCTCCGTTATAGTTCTTTTAAGGGAAAGCTCCGAATCAACCCATTTTATCCAAAAATGAAAAGATAAAACCACCCGCCCCTAATATAACCCGCATCCGACCAACTAACATGTAAAACCCACCCAAGTCCAAAGAAAGCAAAACTAACCCTTTAACGGCGGCGGCGGCGGCAGCGACGGCGCAACTTTTTTCCATGAGTTGATTTCCAAGAAAATGGAAATAACTTTGCCCGCATTGGATCTAACTAACAACTTATTGTTCTACCCAAGTCCAAGAAATCAAAAACAAACCCATATAATGGTAGCGTGGCGGCGGCGCGTCTTCTTCAATGGTTTCCAGGAGAAGGGGAAATAACTTTACCCACATCCGACCCAACTAACAAGTAAACCATCTTTCCCGTTATAGTTCTACCCAGGTCCAAGAAGGCAAATACAAACCCCTCTGGGCGTGGCAGCGGCGCATCTTCTTCCATGTCTTCCAAGAAAAGGGAAAATAACTTTGCCTTTTCCCATCTTCTACAGTTCCCTTAATTTTGCATTTTTTTAGAATCTAACTCAACAGTCCCTTTATGGACTTCATCACTTCTAACCAAACACAAATCCAACTAAGAAGAGATAAAACTCAATAAAATGAATAGCGTCCCAGAGGAAAATCTCAACACCTGAGTAGACATAAAAAAGAATCAACTTAGCAGTTAAATAAAATATCACATCATCAACAGCAGAAGTTGCCGCCTGAATCGCCACGAACCCAACCACAAAAGCAGAGACAAATTTCCCTTGCTGAAAGAATCAGCCCAAATCCACTACATTCTTGTACTGCAATTCCAATTACACTTGCCTCGAAATTGCCGCAAATACAGTAACTTGGTGACTTTTGAGGAAGATGGAAAAATTGATTCTTTTCTATTGGGTGGACAAACTCACCAAGAGTAATTAAAAATAAATATGGTCTGTTTTGAGGTTGAAGTTTAATTCAGGTGACATAGTACTTTGCTGGGTTTTGAGGAAACTGGAACAGTATTTGTTTTTTAATCATAATGTTGAGTTTATTTAATTTGGTTCGGATTTTAATTTGATGGGTTTGCGGTCGGATTCATTCTAACCAATAAAAGAATGTTGATGGTTATTTTATCTCCAATAACTATATTGCAAGTACTTGTAAACCAAAAATACATTCACAGATTATAATTAAAGTAGTCTTTTTCTAATCAGAAGAATTATTTTCACCCGTGTTTTCTTTCTTTGGTATCTTGATGATTGAACAAGCTAACTGTGTCTTGATATTACCCCACTTGATTTGTTTGATATTTTAACTGATTTTCTTGAGAAAGGAGCTAGCTAATTATAGGTTCTGCAATTTCAATCTACAGTTAGGTACTCCAACTACTGGAGAAAGGGTATCAGAAGGTTTTGTAGCAGTGCCGTGGTGCATGAAGAGCCAATCACTCCACCTGTTGAGGTTAAATATAATCAGCTTCTCATTAATGGACAGTTTGTTGATGCAGCCTCAGGTTGACCTAAAGTCTTTTCATTTATATGTTATTTCTTCTATAAATCTCAAGTGTAATATGGAGAATTCTACGTCTTCAGGGAAGACATTTCCTACATTTGACCCTCGAACAGGCGAAGCTATTACTACGGTTGCGGAGGCCGACACTGAAGATGTCAACCGTGCAGTCTTTGCTGCCCGTAAAGCATTTGATGAAGGACCAT</genome_strand>
        <mrna_strand>TTTGGAATGCTCTCTCTTTATGTGAACATTATGCTTTGTATGAAATAAAGGTCCTCTAAGATTTCTGTAAGCAACTTTGAAAATTTCT..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTAGGAACTCCAACTACTGGAGAAAGGGTATCAGAAGGTTTTGTAGCAATGCCGTGGTGCATGAAGAGCCAATCACTCCACCTGTTGAGGTTAAATATAATCAGCTTCTCATTAATGGACAGTTTGTTGATGCAGCCTCAG...............................................................................GGAAGACATTTCCTACATTTGACCCTCGAACAGGCGAAGCTATTACTACGGTTGCGGAGGCCGACACTGAATATGTAAACCGTGCAGTCTTTGCTGCCCGTAAAGCATTTGATGAAGGACCAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0236E02-u8qcS/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E333396" ref_strand="+" ref_description="SGN-E333396 [cTOD-20-D23]">
      <seq>aacttttttccatgagttgatttccaagaaaatggaaataactttgcccgcattggatctaactaacaacttattgttctacccaagtccaagaaatcaaaaacaaacccatataatggtagcgtggcggcggcgcgtcttcttcaatggtttccaggagaaggggaaataactttacccacatccgacccaactaacaagtaaaccatctttcccgttatagttctacccaggtccaagaaggcaaatacaaacccctctgggcgtggcagcggcgcatcttcttccatgtcttccaagaaaagggaaaataactttgccttttcccatcttctacagttcccttaattttgcatttttttagaatctaactcaacagtccctttatggacttcatcacttctaaccaaacacaaatccaactaagaagagataaaactcaataaaatgaatagcgtcccagaggaaaatctcaacacctgagtagacataaaaaagaatcaacttagcagttaaataaaatatcacatcatcaacagcagaagttgccgcctgaatcgccacgaacccaaccacaaaagcagagacaaatttcccttgctgaaagaatcagcccaaatccactacattcttgtactgcaattccaattacacttgcctcgaaattgccgcaaatacagtaacttggtgacttttgangaagatggaaaaattgattcttttctat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0236E02-u8qcS/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0236E02.1" temp_strand="-" temp_description="C02HBa0236E02.1  AC215430.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0236E02 sequenced_by:kribb upload_account_name:korea">
        <position start="122859" stop="121533"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="122559" g_stop="121833" g_length="727"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="727" r_length="727" r_score="0.999"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0236E02.1" gen_strand="-" ref_id="SGN-E333396" ref_strand="+">
        <total_alignment_score>0.999</total_alignment_score>
        <cumulative_length_of_scored_exons>727</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0236E02.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E333396" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="122559" e_stop="121833"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AACTTTTTTCCATGAGTTGATTTCCAAGAAAATGGAAATAACTTTGCCCGCATTGGATCTAACTAACAACTTATTGTTCTACCCAAGTCCAAGAAATCAAAAACAAACCCATATAATGGTAGCGTGGCGGCGGCGCGTCTTCTTCAATGGTTTCCAGGAGAAGGGGAAATAACTTTACCCACATCCGACCCAACTAACAAGTAAACCATCTTTCCCGTTATAGTTCTACCCAGGTCCAAGAAGGCAAATACAAACCCCTCTGGGCGTGGCAGCGGCGCATCTTCTTCCATGTCTTCCAAGAAAAGGGAAAATAACTTTGCCTTTTCCCATCTTCTACAGTTCCCTTAATTTTGCATTTTTTTAGAATCTAACTCAACAGTCCCTTTATGGACTTCATCACTTCTAACCAAACACAAATCCAACTAAGAAGAGATAAAACTCAATAAAATGAATAGCGTCCCAGAGGAAAATCTCAACACCTGAGTAGACATAAAAAAGAATCAACTTAGCAGTTAAATAAAATATCACATCATCAACAGCAGAAGTTGCCGCCTGAATCGCCACGAACCCAACCACAAAAGCAGAGACAAATTTCCCTTGCTGAAAGAATCAGCCCAAATCCACTACATTCTTGTACTGCAATTCCAATTACACTTGCCTCGAAATTGCCGCAAATACAGTAACTTGGTGACTTTTGAGGAAGATGGAAAAATTGATTCTTTTCTAT</genome_strand>
        <mrna_strand>AACTTTTTTCCATGAGTTGATTTCCAAGAAAATGGAAATAACTTTGCCCGCATTGGATCTAACTAACAACTTATTGTTCTACCCAAGTCCAAGAAATCAAAAACAAACCCATATAATGGTAGCGTGGCGGCGGCGCGTCTTCTTCAATGGTTTCCAGGAGAAGGGGAAATAACTTTACCCACATCCGACCCAACTAACAAGTAAACCATCTTTCCCGTTATAGTTCTACCCAGGTCCAAGAAGGCAAATACAAACCCCTCTGGGCGTGGCAGCGGCGCATCTTCTTCCATGTCTTCCAAGAAAAGGGAAAATAACTTTGCCTTTTCCCATCTTCTACAGTTCCCTTAATTTTGCATTTTTTTAGAATCTAACTCAACAGTCCCTTTATGGACTTCATCACTTCTAACCAAACACAAATCCAACTAAGAAGAGATAAAACTCAATAAAATGAATAGCGTCCCAGAGGAAAATCTCAACACCTGAGTAGACATAAAAAAGAATCAACTTAGCAGTTAAATAAAATATCACATCATCAACAGCAGAAGTTGCCGCCTGAATCGCCACGAACCCAACCACAAAAGCAGAGACAAATTTCCCTTGCTGAAAGAATCAGCCCAAATCCACTACATTCTTGTACTGCAATTCCAATTACACTTGCCTCGAAATTGCCGCAAATACAGTAACTTGGTGACTTTTGANGAAGATGGAAAAATTGATTCTTTTCTAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0236E02-u8qcS/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E253442" ref_strand="+" ref_description="SGN-E253442 [cLEG-24-D6]">
      <seq>acctatcatttttttgaaaaattaactttaatgaaagtgaaatccaaaccaggtgagagatataaaaaaaaaaaaaggaaaagagagagtacctaaattaagatgccagtccattcttttgcacataaacagtagtaaagaccgtagtataaataccttgaagtgcgaagctgagaaatgatccgtcgtgtatgagtattcattgctggagaccgagaaaattaaatagagatggagaagaagagataagaatcggagcaacgtcaagaattcagataccagagtaatttttggaccagagaccagatttgctgctgctaaaaatgcagagaaaaatcaggctcatctggcttaaacagcttgggcatttttaagctagaagaagaatcagccatcttctgttctattcctcttctcgtattagtagcaaatcgtttggccaaaattgtagctccaagttgttgggaaccacgagaaccactggctactaacggttgctcaggaccagcgtcatcaaaactttgctcattgtagttaccctcatcattaggatcttgattataataatagctctctt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0236E02-u8qcS/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0236E02.1" temp_strand="+" temp_description="C02HBa0236E02.1  AC215430.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0236E02 sequenced_by:kribb upload_account_name:korea">
        <position start="126171" stop="127794"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="126471" g_stop="126792" g_length="322"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="331" r_length="331" r_score="0.944"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="126793" i_stop="127248" i_length="456">
            <donor d_prob="0.967" d_score="0.92"/>
            <acceptor a_prob="0.985" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="127249" g_stop="127494" g_length="246"/>
          <reference_exon_boundary r_type="cDNA" r_start="332" r_stop="577" r_length="246" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0236E02.1" gen_strand="+" ref_id="SGN-E253442" ref_strand="+">
        <total_alignment_score>0.968</total_alignment_score>
        <cumulative_length_of_scored_exons>568</cumulative_length_of_scored_exons>
        <coverage percentage="0.984" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0236E02.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E253442" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="126471" e_stop="126792"/>
          <exon e_start="127249" e_stop="127494"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACCTATCATTTTTTTGAAAAATTAACTTTAATGAAAGTGAAATCCAAA-CAGGTGAGAGATATAAAAAAAAAAAAAGGAAAAGAGAGAGTA-CTAAATTAAGATG-CAGTCCATTCTTTTGCACATAAACAGTAGTAAAGA-CGTAGTATAAATA-CTTGAAGTGCGAAGCTGAGAAATGATCCGTCGTGTATGAGTATTCATTGCTGGAGA-CGAGAAAATTAAATAGAGATGGAGAAGAAGAGATAAGAATCGGAGCAACGTCAAGAATTCAGATA-CAGAGTAATTTTTGGA-CAGAGA-CAGATTTGCTGCTGCTAAAAATGCAGAGGTAGTCTAACTACTTGCACGTCATCAATTAGCTGATTCATTAGATATAAGCTTATCCCTTTTCTTCTCTGTGTTCCATTCCACTATTCCTTTCCTGAACCCTATGAAAAAAATATTGCCTTCTTTTTTTTCTGTCCAATCAAAAACAATCTAATATGTACAGGTAAAACTTACCCACAATATGTTTGGCGTAAACATCCGGTACGGGTAAGTTTTTTCCAATATTACCTTTGGAACTAGATAACTTTTAGGCACAATCAACTAGAAAAGAAGGTTGTATTTCACATGATTGAAAAGGGAATAATGTTGTAATCAAAAAGGCCTATAGTTCCTGAAATTTACAAAAAAGTTTTAAAAAAAAGGGTACTAGCTTTGTCATTACTCACCAGTCACCAGTACCTTTCAGTAATGCAAGGTGTTCTAACTAATTACATATGATGTGGCCTTCATTCTGCAGAAAAATCAGGCTCATCTGGCTTAAACAGCTTGGGCATTTTTAAGCTAGAAGAAGAATCAGCCATCTTCTGTTCTATTCCTCTTCTCGTATTAGTAGCAAATCGTTTGGCCAAAATTGTAGCTCCAAGTTGTTGGGAACCACGAGAACCACTGGCTACTAACGGTTGCTCAGGACCAGCGTCATCAAAACTTTGCTCATTGTAGTTACCCTCATCATTAGGATCTTGATTATAATAATAGCTCTCTT</genome_strand>
        <mrna_strand>ACCTATCATTTTTTTGAAAAATTAACTTTAATGAAAGTGAAATCCAAACCAGGTGAGAGATATAAAAAAAAAAAAAGGAAAAGAGAGAGTACCTAAATTAAGATGCCAGTCCATTCTTTTGCACATAAACAGTAGTAAAGACCGTAGTATAAATACCTTGAAGTGCGAAGCTGAGAAATGATCCGTCGTGTATGAGTATTCATTGCTGGAGACCGAGAAAATTAAATAGAGATGGAGAAGAAGAGATAAGAATCGGAGCAACGTCAAGAATTCAGATACCAGAGTAATTTTTGGACCAGAGACCAGATTTGCTGCTGCTAAAAATGCAGAG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAAAATCAGGCTCATCTGGCTTAAACAGCTTGGGCATTTTTAAGCTAGAAGAAGAATCAGCCATCTTCTGTTCTATTCCTCTTCTCGTATTAGTAGCAAATCGTTTGGCCAAAATTGTAGCTCCAAGTTGTTGGGAACCACGAGAACCACTGGCTACTAACGGTTGCTCAGGACCAGCGTCATCAAAACTTTGCTCATTGTAGTTACCCTCATCATTAGGATCTTGATTATAATAATAGCTCTCTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0236E02-u8qcS/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E308495" ref_strand="+" ref_description="SGN-E308495 [cLEY-21-O22]">
      <seq>tggagacgagaaaattaaatagagatggagaagaagagataagaatcggagcaacgtcaagaattcagatacagagtaatttttggacagagacagatttgctgctgctaaaaatgcagaggtcttcagctcgaagtgcaaatgcttcaacttcagtaagtgttctcactgttcgagttgaagctggcaactgcgttgagttaggcagtaaggcccaagtcagcaattcttcaccacaaaaatcattaggtccaagggtgattgaattgaagaatccagatcttcccccatttgtcgtggagctctctagttgtcccctgatgataaagagcatctcactcactggatcatcttctagaacaacatatgtgcccattatgctcagggtcgacactaggcgttcacatattgcatcaagcaactggtcatccatttgctcaaaaaatggaacctgcgcagtcaggagattttggggtctctaaagcttagcaaacaaaagtggatgggtttaggcatttacagagtaaaaatacaactccaaacatgtggctgatgcaaatacaaaacgt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0236E02-u8qcS/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0236E02.1" temp_strand="+" temp_description="C02HBa0236E02.1  AC215430.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0236E02 sequenced_by:kribb upload_account_name:korea">
        <position start="126372" stop="128402"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="126672" g_stop="126792" g_length="121"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="121" r_length="121" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="126793" i_stop="127654" i_length="862">
            <donor d_prob="0.967" d_score="1.00"/>
            <acceptor a_prob="0.821" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="127655" g_stop="128102" g_length="448"/>
          <reference_exon_boundary r_type="cDNA" r_start="122" r_stop="569" r_length="448" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0236E02.1" gen_strand="+" ref_id="SGN-E308495" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>569</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0236E02.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E308495" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="126672" e_stop="126792"/>
          <exon e_start="127655" e_stop="128102"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGGAGACGAGAAAATTAAATAGAGATGGAGAAGAAGAGATAAGAATCGGAGCAACGTCAAGAATTCAGATACAGAGTAATTTTTGGACAGAGACAGATTTGCTGCTGCTAAAAATGCAGAGGTAGTCTAACTACTTGCACGTCATCAATTAGCTGATTCATTAGATATAAGCTTATCCCTTTTCTTCTCTGTGTTCCATTCCACTATTCCTTTCCTGAACCCTATGAAAAAAATATTGCCTTCTTTTTTTTCTGTCCAATCAAAAACAATCTAATATGTACAGGTAAAACTTACCCACAATATGTTTGGCGTAAACATCCGGTACGGGTAAGTTTTTTCCAATATTACCTTTGGAACTAGATAACTTTTAGGCACAATCAACTAGAAAAGAAGGTTGTATTTCACATGATTGAAAAGGGAATAATGTTGTAATCAAAAAGGCCTATAGTTCCTGAAATTTACAAAAAAGTTTTAAAAAAAAGGGTACTAGCTTTGTCATTACTCACCAGTCACCAGTACCTTTCAGTAATGCAAGGTGTTCTAACTAATTACATATGATGTGGCCTTCATTCTGCAGAAAAATCAGGCTCATCTGGCTTAAACAGCTTGGGCATTTTTAAGCTAGAAGAAGAATCAGCCATCTTCTGTTCTATTCCTCTTCTCGTATTAGTAGCAAATCGTTTGGCCAAAATTGTAGCTCCAAGTTGTTGGGAACCACGAGAACCACTGGCTACTAACGGTTGCTCAGGACCAGCGTCATCAAAACTTTGCTCATTGTAGTTACCCTCATCATTAGGATCTTGATTATAATAATAGCTCTCTTGTAGAGCCAACTCGTATTCCATCTTTTTCTTCTTATACCTTCTCCATGCAGCCTGTATAAAACAAGCACCCCATGTTCTCCACTGATGAGAATAGTACCTAAATGCATGCTGTAGCTTCATGCTGTGAAGACGTTTAAATTGAACTGCAAAAAATTTCAGGTCTTCAGCTCGAAGTGCAAATGCTTCAACTTCAGTAAGTGTTCTCACTGTTCGAGTTGAAGCTGGCAACTGCGTTGAGTTAGGCAGTAAGGCCCAAGTCAGCAATTCTTCACCACAAAAATCATTAGGTCCAAGGGTGATTGAATTGAAGAATCCAGATCTTCCCCCATTTGTCGTGGAGCTCTCTAGTTGTCCCCTGATGATAAAGAGCATCTCACTCACTGGATCATCTTCTAGAACAACATATGTGCCCATTATGCTCAGGGTCGACACTAGGCGTTCACATATTGCATCAAGCAACTGGTCATCCATTTGCTCAAAAAATGGAACCTGCGCAGTCAGGAGATTTTGGGGTCTCTAAAGCTTAGCAAACAAAAGTGGATGGGTTTAGGCATTTACAGAGTAAAAATACAACTCCAAACATGTGGCTGATGCAAATACAAAACGT</genome_strand>
        <mrna_strand>TGGAGACGAGAAAATTAAATAGAGATGGAGAAGAAGAGATAAGAATCGGAGCAACGTCAAGAATTCAGATACAGAGTAATTTTTGGACAGAGACAGATTTGCTGCTGCTAAAAATGCAGAG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTCTTCAGCTCGAAGTGCAAATGCTTCAACTTCAGTAAGTGTTCTCACTGTTCGAGTTGAAGCTGGCAACTGCGTTGAGTTAGGCAGTAAGGCCCAAGTCAGCAATTCTTCACCACAAAAATCATTAGGTCCAAGGGTGATTGAATTGAAGAATCCAGATCTTCCCCCATTTGTCGTGGAGCTCTCTAGTTGTCCCCTGATGATAAAGAGCATCTCACTCACTGGATCATCTTCTAGAACAACATATGTGCCCATTATGCTCAGGGTCGACACTAGGCGTTCACATATTGCATCAAGCAACTGGTCATCCATTTGCTCAAAAAATGGAACCTGCGCAGTCAGGAGATTTTGGGGTCTCTAAAGCTTAGCAAACAAAAGTGGATGGGTTTAGGCATTTACAGAGTAAAAATACAACTCCAAACATGTGGCTGATGCAAATACAAAACGT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0236E02-u8qcS/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E279612" ref_strand="+" ref_description="SGN-E279612 [cLER-5-C15]">
      <seq>acaagagagctattattataatcaagatcctaatgatgagggtaactacaatgagcaaagttttgatgacgctggtcctgagcaaccgttagtagccagtggttctcgtggttcccaacaacttggagctacaattttggccaaacgatttgctactaatacgagaagaggaatagaacagaagatggctgattcttcttctagcttaaaaatgcccaagctgtttaagccagatgagcctgatttttctgcagaatgaaggccacatcatatgtaattagttagaacaccttgcattactgaaaggtactggtgactggtgagtaatgacaaagctagtacccttttttttaaaacttttttgtaaatttcaggaactataggcctttttgattacaacattattcccttttcaatcatgtgaaatacaaccttcttttctagttgattgtgcctaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0236E02-u8qcS/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0236E02.1" temp_strand="-" temp_description="C02HBa0236E02.1  AC215430.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0236E02 sequenced_by:kribb upload_account_name:korea">
        <position start="127796" stop="126737"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="127496" g_stop="127037" g_length="460"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="460" r_length="460" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="127036" i_stop="126923" i_length="114">
            <donor d_prob="0.000" d_score="1.00"/>
            <acceptor a_prob="0.898" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="126922" g_stop="126917" g_length="6"/>
          <reference_exon_boundary r_type="cDNA" r_start="461" r_stop="466" r_length="6" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0236E02.1" gen_strand="-" ref_id="SGN-E279612" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>466</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0236E02.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E279612" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="127496" e_stop="127037"/>
          <exon e_start="126922" e_stop="126917"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACAAGAGAGCTATTATTATAATCAAGATCCTAATGATGAGGGTAACTACAATGAGCAAAGTTTTGATGACGCTGGTCCTGAGCAACCGTTAGTAGCCAGTGGTTCTCGTGGTTCCCAACAACTTGGAGCTACAATTTTGGCCAAACGATTTGCTACTAATACGAGAAGAGGAATAGAACAGAAGATGGCTGATTCTTCTTCTAGCTTAAAAATGCCCAAGCTGTTTAAGCCAGATGAGCCTGATTTTTCTGCAGAATGAAGGCCACATCATATGTAATTAGTTAGAACACCTTGCATTACTGAAAGGTACTGGTGACTGGTGAGTAATGACAAAGCTAGTACCCTTTTTTTTAAAACTTTTTTGTAAATTTCAGGAACTATAGGCCTTTTTGATTACAACATTATTCCCTTTTCAATCATGTGAAATACAACCTTCTTTTCTAGTTGATTGTGCCTAAAAGTTATCTAGTTCCAAAGGTAATATTGGAAAAAACTTACCCGTACCGGATGTTTACGCCAAACATATTGTGGGTAAGTTTTACCTGTACATATTAGATTGTTTTTGATTGGACAGAAAAAA</genome_strand>
        <mrna_strand>ACAAGAGAGCTATTATTATAATCAAGATCCTAATGATGAGGGTAACTACAATGAGCAAAGTTTTGATGACGCTGGTCCTGAGCAACCGTTAGTAGCCAGTGGTTCTCGTGGTTCCCAACAACTTGGAGCTACAATTTTGGCCAAACGATTTGCTACTAATACGAGAAGAGGAATAGAACAGAAGATGGCTGATTCTTCTTCTAGCTTAAAAATGCCCAAGCTGTTTAAGCCAGATGAGCCTGATTTTTCTGCAGAATGAAGGCCACATCATATGTAATTAGTTAGAACACCTTGCATTACTGAAAGGTACTGGTGACTGGTGAGTAATGACAAAGCTAGTACCCTTTTTTTTAAAACTTTTTTGTAAATTTCAGGAACTATAGGCCTTTTTGATTACAACATTATTCCCTTTTCAATCATGTGAAATACAACCTTCTTTTCTAGTTGATTGTGCCTAAAA..................................................................................................................AAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0236E02-u8qcS/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E374138" ref_strand="+" ref_description="SGN-E374138 [TUS-33-L1](-)">
      <seq>attcaatcacccttggacctaatattttttgtgggaagaaatgctgacatgggccttactgcctaactcaacgcagttgccagcttcaactcgaacagtgagaacacttactgaagttgaagcatttgcacttcgagctgaagacctgaaattttttgcagttcaatttaaacgtcttcacagcatgaagctacagcatgcatttaggtactattctcatcagtggagaacatggggtgcttgttttatagaggctgcatggagaaggtataagaagaaaaagatggaacacgagttggctctacaagagagctattattataatcaagatcctaatgatgagggtaactacaatgagcaaagttttgatgacgctggtcctgagcaaccgttagtagccagtggttctcgtggttcccaacaacttggagctacaattttggccaaacgatttgctactaatacgagacgaggaatagaacagaagatggctgattcttcttctagcttaaaaatgcccaagctgtttaagccagatgagcctgatttttctgcagaatgaaggccacattatatgtaattagttagaacaccttgcattactgaaaggtactggtgactggtgagtaatgacaaagctagtacccttttttttaaaacttttttgtaaatttcaggaactataggcctttttgattacaacattattcccttttcaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0236E02-u8qcS/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0236E02.1" temp_strand="-" temp_description="C02HBa0236E02.1  AC215430.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0236E02 sequenced_by:kribb upload_account_name:korea">
        <position start="128100" stop="126781"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="127800" g_stop="127077" g_length="724"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="723" r_length="723" r_score="0.983"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0236E02.1" gen_strand="-" ref_id="SGN-E374138" ref_strand="+">
        <total_alignment_score>0.983</total_alignment_score>
        <cumulative_length_of_scored_exons>724</cumulative_length_of_scored_exons>
        <coverage percentage="0.996" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0236E02.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E374138" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="127800" e_stop="127077"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATTCAATCACCCTTGGACCTAATGATTTTTGTGGTGAAGAATTGCTGACTTGGGCCTTACTGCCTAACTCAACGCAGTTGCCAGCTTCAACTCGAACAGTGAGAACACTTACTGAAGTTGAAGCATTTGCACTTCGAGCTGAAGACCTGAAATTTTTTGCAGTTCAATTTAAACGTCTTCACAGCATGAAGCTACAGCATGCATTTAGGTACTATTCTCATCAGTGGAGAACATGGGGTGCTTGTTTTATACAGGCTGCATGGAGAAGGTATAAGAAGAAAAAGATGGAATACGAGTTGGCTCTACAAGAGAGCTATTATTATAATCAAGATCCTAATGATGAGGGTAACTACAATGAGCAAAGTTTTGATGACGCTGGTCCTGAGCAACCGTTAGTAGCCAGTGGTTCTCGTGGTTCCCAACAACTTGGAGCTACAATTTTGGCCAAACGATTTGCTACTAATACGAGAAGAGGAATAGAACAGAAGATGGCTGATTCTTCTTCTAGCTTAAAAATGCCCAAGCTGTTTAAGCCAGATGAGCCTGATTTTTCTGCAGAATGAAGGCCACATCATATGTAATTAGTTAGAACACCTTGCATTACTGAAAGGTACTGGTGACTGGTGAGTAATGACAAAGCTAGTACCCTTTTTTTTAAAACTTTTTTGTAAATTTCAGGAACTATAGGCCTTTTTGATTACAACATTATTCCCTTTTCAATCAT</genome_strand>
        <mrna_strand>ATTCAATCACCCTTGGACCTAATATTTTTTGTGG-GAAGAAATGCTGACATGGGCCTTACTGCCTAACTCAACGCAGTTGCCAGCTTCAACTCGAACAGTGAGAACACTTACTGAAGTTGAAGCATTTGCACTTCGAGCTGAAGACCTGAAATTTTTTGCAGTTCAATTTAAACGTCTTCACAGCATGAAGCTACAGCATGCATTTAGGTACTATTCTCATCAGTGGAGAACATGGGGTGCTTGTTTTATAGAGGCTGCATGGAGAAGGTATAAGAAGAAAAAGATGGAACACGAGTTGGCTCTACAAGAGAGCTATTATTATAATCAAGATCCTAATGATGAGGGTAACTACAATGAGCAAAGTTTTGATGACGCTGGTCCTGAGCAACCGTTAGTAGCCAGTGGTTCTCGTGGTTCCCAACAACTTGGAGCTACAATTTTGGCCAAACGATTTGCTACTAATACGAGACGAGGAATAGAACAGAAGATGGCTGATTCTTCTTCTAGCTTAAAAATGCCCAAGCTGTTTAAGCCAGATGAGCCTGATTTTTCTGCAGAATGAAGGCCACATTATATGTAATTAGTTAGAACACCTTGCATTACTGAAAGGTACTGGTGACTGGTGAGTAATGACAAAGCTAGTACCCTTTTTTTTAAAACTTTTTTGTAAATTTCAGGAACTATAGGCCTTTTTGATTACAACATTATTCCCTTTTCAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0236E02-u8qcS/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E357653" ref_strand="+" ref_description="SGN-E357653 [cTOS-24-A18]">
      <seq>tccactgatgagaatagtacctaaatgcatgctgtagcttcatgctgtgaagacgtttaaattgaactgcaaaaaatttcaggtcttcagctcgaagtgcaaatgcttcaacttcagtaagtgttctcactgttcgagttgaagctggcaactgcgttgagttaggcagtaaggcccaagtcagcaattcttcaccacaaaaatcattaggtccaagggtgattgaattgaagaatccagatcttcccccatttgtcgtggagctctctagttgtcccctgatgataaagagcatctcactcactggatcatcttctagaacaacatatgtgcccattatgctcagggtcgacactaggcgttcacatattgcatcaagcaactggtcatccatttgctcaaaaaatggaacctgcgcagtcaggagattttggggtctctaaagcttagcaaacaaaagtggatgggtttaggcatttacagagtaaaaatacaactccaaacatgtggctgatgcaaatacaaaacgtaaggtacatcacaagacaagtcaaagcttaaattgatgactgaagagatggaactattttatttattcattcactaatacttattagtacttatttcttttgctcaaatctttaactactggcaaatatttctgcctgcagctcttttccttaatggttgcctccctgaagtatttcattnccagagaaagtgaatactgcnaacaccacatattacatcatctggctatgccatatatatatatatatctaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0236E02-u8qcS/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0236E02.1" temp_strand="+" temp_description="C02HBa0236E02.1  AC215430.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0236E02 sequenced_by:kribb upload_account_name:korea">
        <position start="127273" stop="128656"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="127573" g_stop="128356" g_length="784"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="783" r_length="783" r_score="0.985"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0236E02.1" gen_strand="+" ref_id="SGN-E357653" ref_strand="+">
        <total_alignment_score>0.985</total_alignment_score>
        <cumulative_length_of_scored_exons>784</cumulative_length_of_scored_exons>
        <coverage percentage="1.001" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0236E02.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E357653" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="127573" e_stop="128356"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCCACTGATGAGAATAGTACCTAAATGCATGCTGTAGCTTCATGCTGTGAAGACGTTTAAATTGAACTGCAAAAAATTTCAGGTCTTCAGCTCGAAGTGCAAATGCTTCAACTTCAGTAAGTGTTCTCACTGTTCGAGTTGAAGCTGGCAACTGCGTTGAGTTAGGCAGTAAGGCCCAAGTCAGCAATTCTTCACCACAAAAATCATTAGGTCCAAGGGTGATTGAATTGAAGAATCCAGATCTTCCCCCATTTGTCGTGGAGCTCTCTAGTTGTCCCCTGATGATAAAGAGCATCTCACTCACTGGATCATCTTCTAGAACAACATATGTGCCCATTATGCTCAGGGTCGACACTAGGCGTTCACATATTGCATCAAGCAACTGGTCATCCATTTGCTCAAAAAATGGAACCTGCGCAGTCAGGAGATTTTGGGGTCTCTAAAGCTTAGCAAACAAAAGTGGATGGGTTTAGGCATTTACAGAGTAAAAATACAACTCCAAACATGTGGCTGATGCAAATACAAAACGTAAGGTACATCACAAGACAAGTCAAAGCTTAAATTGATGACTGAAGAGATGGAACTATTTTATTTATTCATTCACTAATACTTATTAGTACTTATTTCTTTTGCTCAAATCTTTAACTACTGGCAAATATTTCTGCCTGCAGCTCTTTTCCTTAATGTTTGCCTCCTGAAAGTATTTCAATTCCAAGAGAAGTGAAATACTGCAAACACCACATATTACATCATCTGGCTATGCCATATATATATATATATCTAA</genome_strand>
        <mrna_strand>TCCACTGATGAGAATAGTACCTAAATGCATGCTGTAGCTTCATGCTGTGAAGACGTTTAAATTGAACTGCAAAAAATTTCAGGTCTTCAGCTCGAAGTGCAAATGCTTCAACTTCAGTAAGTGTTCTCACTGTTCGAGTTGAAGCTGGCAACTGCGTTGAGTTAGGCAGTAAGGCCCAAGTCAGCAATTCTTCACCACAAAAATCATTAGGTCCAAGGGTGATTGAATTGAAGAATCCAGATCTTCCCCCATTTGTCGTGGAGCTCTCTAGTTGTCCCCTGATGATAAAGAGCATCTCACTCACTGGATCATCTTCTAGAACAACATATGTGCCCATTATGCTCAGGGTCGACACTAGGCGTTCACATATTGCATCAAGCAACTGGTCATCCATTTGCTCAAAAAATGGAACCTGCGCAGTCAGGAGATTTTGGGGTCTCTAAAGCTTAGCAAACAAAAGTGGATGGGTTTAGGCATTTACAGAGTAAAAATACAACTCCAAACATGTGGCTGATGCAAATACAAAACGTAAGGTACATCACAAGACAAGTCAAAGCTTAAATTGATGACTGAAGAGATGGAACTATTTTATTTATTCATTCACTAATACTTATTAGTACTTATTTCTTTTGCTCAAATCTTTAACTACTGGCAAATATTTCTGCCTGCAGCTCTTTTCCTTAATGGTTGCCTCCCTGAAGTATTTC-ATTNCCAGAGAAAGTGAATACTGCNAACACCACATATTACATCATCTGGCTATGCCATATATATATATATATCTAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0236E02-u8qcS/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E318767" ref_strand="+" ref_description="SGN-E318767 [cTOB-11-K13]">
      <seq>tttttactaataagtattagtgaatgaataaataaaatagttccatctcttcagtcatcaatttaagctttgacttgtcttgtgatgtaccttacgttttgtatttgcatcagccacatgtttggagttgtatttttactctgtaaatgcctaaacccatccacttttgtttgctaagctttagagaccccaaaatctcctgactgcgcaggttccattttttgagcaaatggatgaccagttgcttgatgcaatatgtgaacgcctagtgtcgaccctgagcataatgggcacatatgttgttctagaagatgatccagtgagtgagatgctctttatcatcaggggacaactagagagctccacgacaaatgggggaagatctggattcttcaattcaatcacccttggacctaatgatttttgcggtgaagaattgctgacttgggccttactgcctaactcaacgcagttgccagcttcaactcgaacagtgagaacacttactgaagttgaagcatttgcacttcgagctg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0236E02-u8qcS/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0236E02.1" temp_strand="-" temp_description="C02HBa0236E02.1  AC215430.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0236E02 sequenced_by:kribb upload_account_name:korea">
        <position start="128491" stop="127360"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="128195" g_stop="127660" g_length="536"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="536" r_length="536" r_score="0.993"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0236E02.1" gen_strand="-" ref_id="SGN-E318767" ref_strand="+">
        <total_alignment_score>0.993</total_alignment_score>
        <cumulative_length_of_scored_exons>536</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0236E02.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E318767" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="128195" e_stop="127660"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TAAGTACTAATAAGTATTAGTGAATGAATAAATAAAATAGTTCCATCTCTTCAGTCATCAATTTAAGCTTTGACTTGTCTTGTGATGTACCTTACGTTTTGTATTTGCATCAGCCACATGTTTGGAGTTGTATTTTTACTCTGTAAATGCCTAAACCCATCCACTTTTGTTTGCTAAGCTTTAGAGACCCCAAAATCTCCTGACTGCGCAGGTTCCATTTTTTGAGCAAATGGATGACCAGTTGCTTGATGCAATATGTGAACGCCTAGTGTCGACCCTGAGCATAATGGGCACATATGTTGTTCTAGAAGATGATCCAGTGAGTGAGATGCTCTTTATCATCAGGGGACAACTAGAGAGCTCCACGACAAATGGGGGAAGATCTGGATTCTTCAATTCAATCACCCTTGGACCTAATGATTTTTGTGGTGAAGAATTGCTGACTTGGGCCTTACTGCCTAACTCAACGCAGTTGCCAGCTTCAACTCGAACAGTGAGAACACTTACTGAAGTTGAAGCATTTGCACTTCGAGCTG</genome_strand>
        <mrna_strand>TTTTTACTAATAAGTATTAGTGAATGAATAAATAAAATAGTTCCATCTCTTCAGTCATCAATTTAAGCTTTGACTTGTCTTGTGATGTACCTTACGTTTTGTATTTGCATCAGCCACATGTTTGGAGTTGTATTTTTACTCTGTAAATGCCTAAACCCATCCACTTTTGTTTGCTAAGCTTTAGAGACCCCAAAATCTCCTGACTGCGCAGGTTCCATTTTTTGAGCAAATGGATGACCAGTTGCTTGATGCAATATGTGAACGCCTAGTGTCGACCCTGAGCATAATGGGCACATATGTTGTTCTAGAAGATGATCCAGTGAGTGAGATGCTCTTTATCATCAGGGGACAACTAGAGAGCTCCACGACAAATGGGGGAAGATCTGGATTCTTCAATTCAATCACCCTTGGACCTAATGATTTTTGCGGTGAAGAATTGCTGACTTGGGCCTTACTGCCTAACTCAACGCAGTTGCCAGCTTCAACTCGAACAGTGAGAACACTTACTGAAGTTGAAGCATTTGCACTTCGAGCTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0236E02-u8qcS/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E374139" ref_strand="+" ref_description="SGN-E374139 [TUS-33-L1]">
      <seq>ttttcactcactgtttcattcataatacaaaaaaattattggaatctgttgtgttttccagaagagagataatcttccggaatccgattttgatatcggactccgccatggaagatgagtagaatatttgcaaagccggcgtctcacctccgtcatttacagcaatctttgaagaacaaatcattttcgaacgatgtgccatggtggcgccaaattctcgatccaaacagcgatatcgtcaatcgctggaactatgtcttcctccttacctgtctcatctctcttttcatcgatccactctacttctacgtacctttcgtcagcgatagagcttgtatgtccactgatgacgaagccgcccgtgaaattaccatctatcgttctctcaccgacatcttttacttccttcacattgccatgaagttccgcacagcttttgttgctccgagctctagggttttcggccggggtgagcttgttatggacccccgtgaaattgctatacgatatctcaaaactgatttcatcgttgattttacagctgctcttcccctgcctcaaattgttattcgctatgtaatcccagcagcaaaaagaaatggttcgggtcattccaaaagtacacttgcacttatcgttctcatacaatatgtgccaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0236E02-u8qcS/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0236E02.1" temp_strand="-" temp_description="C02HBa0236E02.1  AC215430.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0236E02 sequenced_by:kribb upload_account_name:korea">
        <position start="131776" stop="130684"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="131713" g_stop="131153" g_length="561"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="561" r_length="561" r_score="0.993"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="131152" i_stop="131081" i_length="72">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="131080" g_stop="130984" g_length="97"/>
          <reference_exon_boundary r_type="cDNA" r_start="562" r_stop="658" r_length="97" r_score="0.990"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0236E02.1" gen_strand="-" ref_id="SGN-E374139" ref_strand="+">
        <total_alignment_score>0.992</total_alignment_score>
        <cumulative_length_of_scored_exons>658</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0236E02.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E374139" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="131713" e_stop="131153"/>
          <exon e_start="131080" e_stop="130984"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTTCACTCACTGTTTCATTCATAATACAAAAAAATTATTGGAATCTGTTGTGTTTTCCAGAAGAGAGACAATCTTCCGGAATCCGATTTTGATATCGGACTCCGCCATGGAAGATGACTAGAATATTTGCAAAGCCGGCGTCTCACCTCCGTCATTTACAGCAATCTTTGAAGAACAAATCATTTTCGAACGATGTGCCATGGTGGCGCCAAATTCTCGATCCAAACAGCGATATCGTCAATCGCTGGAACTATGTCTTCCTCCTTACCTGTCTCATCTCTCTTTTCATCGATCCACTCTACTTCTACGTACCTTTCGTCAGCGATAGAGCTTGTATGTCCACTGATGACGAAGCCGCCCGTGAAATTACCATCTATCGTTCTCTCACCGACATCTTTTACTTCCTTCACATTGCCATGAAGTTCCGCACAGCTTTTGTTGCTCCTAGCTCTAGGGTTTTCGGCCGGGGTGAGCTTGTTATGGATCCCCGTGAAATTGCTATACGATATCTCAAAACTGATTTCATCGTTGATTTTACAGCTGCTCTTCCCCTGCCTCAAGTCAGTACATATCCATTTAGTTTAATACTCTACTTTTATTATTGTTATTTTTAATTAATAGTGCCATTGCAGATTGTTATTCGCTATGTAATCCCAGCAGCCAAAAGAAATGGTTCGGGTCATTCCAAAAGTACACTTGCACTTATCGTTCTCATACAATATGTGCCAA</genome_strand>
        <mrna_strand>TTTTCACTCACTGTTTCATTCATAATACAAAAAAATTATTGGAATCTGTTGTGTTTTCCAGAAGAGAGATAATCTTCCGGAATCCGATTTTGATATCGGACTCCGCCATGGAAGATGAGTAGAATATTTGCAAAGCCGGCGTCTCACCTCCGTCATTTACAGCAATCTTTGAAGAACAAATCATTTTCGAACGATGTGCCATGGTGGCGCCAAATTCTCGATCCAAACAGCGATATCGTCAATCGCTGGAACTATGTCTTCCTCCTTACCTGTCTCATCTCTCTTTTCATCGATCCACTCTACTTCTACGTACCTTTCGTCAGCGATAGAGCTTGTATGTCCACTGATGACGAAGCCGCCCGTGAAATTACCATCTATCGTTCTCTCACCGACATCTTTTACTTCCTTCACATTGCCATGAAGTTCCGCACAGCTTTTGTTGCTCCGAGCTCTAGGGTTTTCGGCCGGGGTGAGCTTGTTATGGACCCCCGTGAAATTGCTATACGATATCTCAAAACTGATTTCATCGTTGATTTTACAGCTGCTCTTCCCCTGCCTCAA........................................................................ATTGTTATTCGCTATGTAATCCCAGCAGCAAAAAGAAATGGTTCGGGTCATTCCAAAAGTACACTTGCACTTATCGTTCTCATACAATATGTGCCAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0236E02-u8qcS/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E363008" ref_strand="+" ref_description="SGN-E363008 [cLPP-2-D5]">
      <seq>ttttcactcactgtttcattcataatacaaaaaaattattggaatctgttgtgttttccagaagagagataatcttccggaatccgattttgatatcggactccgccatggaagatgagtagaatatttgcaaagccggcgtctcacctccgtcatttacagcaatctttgaagaacaaatcattttcgaacgatgtgccatggtggcgccaaattctcgatccaaacagcgatatcgtcaatcgctggaactatgtcttcctccttacctgtctcatctctcttttcatcgatccactctacttctacgtacctttcgtcagcgatagagcttgtatgtccactgatgacgaagccgcccgtgaaattaccatctatcgttctctcaccgacatcttttacttccttcacattgccatgaagttccgcacagcttttgttgctccgagctctagggttttcggccggggtgagcttgttatggacccccgtgaaattgctatacgatatctcaaaactgatttcatcgttgattttacagctgctcttcccctgcctcaaattgttattcgctatgtaatcccagcagcaaaaagaaatggttcgggtcattccaaaagtacacttgcacttatcgttctcatacaatatgtg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0236E02-u8qcS/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0236E02.1" temp_strand="-" temp_description="C02HBa0236E02.1  AC215430.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0236E02 sequenced_by:kribb upload_account_name:korea">
        <position start="131776" stop="130688"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="131713" g_stop="131153" g_length="561"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="561" r_length="561" r_score="0.993"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="131152" i_stop="131081" i_length="72">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="131080" g_stop="130988" g_length="93"/>
          <reference_exon_boundary r_type="cDNA" r_start="562" r_stop="654" r_length="93" r_score="0.989"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0236E02.1" gen_strand="-" ref_id="SGN-E363008" ref_strand="+">
        <total_alignment_score>0.992</total_alignment_score>
        <cumulative_length_of_scored_exons>654</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0236E02.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E363008" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="131713" e_stop="131153"/>
          <exon e_start="131080" e_stop="130988"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTTCACTCACTGTTTCATTCATAATACAAAAAAATTATTGGAATCTGTTGTGTTTTCCAGAAGAGAGACAATCTTCCGGAATCCGATTTTGATATCGGACTCCGCCATGGAAGATGACTAGAATATTTGCAAAGCCGGCGTCTCACCTCCGTCATTTACAGCAATCTTTGAAGAACAAATCATTTTCGAACGATGTGCCATGGTGGCGCCAAATTCTCGATCCAAACAGCGATATCGTCAATCGCTGGAACTATGTCTTCCTCCTTACCTGTCTCATCTCTCTTTTCATCGATCCACTCTACTTCTACGTACCTTTCGTCAGCGATAGAGCTTGTATGTCCACTGATGACGAAGCCGCCCGTGAAATTACCATCTATCGTTCTCTCACCGACATCTTTTACTTCCTTCACATTGCCATGAAGTTCCGCACAGCTTTTGTTGCTCCTAGCTCTAGGGTTTTCGGCCGGGGTGAGCTTGTTATGGATCCCCGTGAAATTGCTATACGATATCTCAAAACTGATTTCATCGTTGATTTTACAGCTGCTCTTCCCCTGCCTCAAGTCAGTACATATCCATTTAGTTTAATACTCTACTTTTATTATTGTTATTTTTAATTAATAGTGCCATTGCAGATTGTTATTCGCTATGTAATCCCAGCAGCCAAAAGAAATGGTTCGGGTCATTCCAAAAGTACACTTGCACTTATCGTTCTCATACAATATGTG</genome_strand>
        <mrna_strand>TTTTCACTCACTGTTTCATTCATAATACAAAAAAATTATTGGAATCTGTTGTGTTTTCCAGAAGAGAGATAATCTTCCGGAATCCGATTTTGATATCGGACTCCGCCATGGAAGATGAGTAGAATATTTGCAAAGCCGGCGTCTCACCTCCGTCATTTACAGCAATCTTTGAAGAACAAATCATTTTCGAACGATGTGCCATGGTGGCGCCAAATTCTCGATCCAAACAGCGATATCGTCAATCGCTGGAACTATGTCTTCCTCCTTACCTGTCTCATCTCTCTTTTCATCGATCCACTCTACTTCTACGTACCTTTCGTCAGCGATAGAGCTTGTATGTCCACTGATGACGAAGCCGCCCGTGAAATTACCATCTATCGTTCTCTCACCGACATCTTTTACTTCCTTCACATTGCCATGAAGTTCCGCACAGCTTTTGTTGCTCCGAGCTCTAGGGTTTTCGGCCGGGGTGAGCTTGTTATGGACCCCCGTGAAATTGCTATACGATATCTCAAAACTGATTTCATCGTTGATTTTACAGCTGCTCTTCCCCTGCCTCAA........................................................................ATTGTTATTCGCTATGTAATCCCAGCAGCAAAAAGAAATGGTTCGGGTCATTCCAAAAGTACACTTGCACTTATCGTTCTCATACAATATGTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0236E02-u8qcS/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E330304" ref_strand="+" ref_description="SGN-E330304 [cTOD-4-N9]">
      <seq>ttgtgttttccagaagagagacaatcttccggaatccgattttgatatcggactccgccatggaagatgactagaatatttgcaaagccggcgtctcacctccgtcatttacagcaatctttgaagaacaaatcattttcgaacgatgtgccatggtggcgccaaattctcgatccaaacagcgatatcgtcaatcgctggaactatgtcttcctccttacctgtctcatctctcttttcatcgatccactctacttctacgtacctttcgtcagcgatagagcttgtatgtccactgatgacgaagccgcccgtgaaattaccatctatcgttctctcaccgacatcttttacttccttcacattgccatgaagttccgcacagcttttgttgctcctagctctagggttttcggccggggtgagcttgttatggatccccgtgaaattgctatacgatatctcaaaactgatttcatcgttgattttacagctgctcttcccctgcctcaaattgttattcgctatgtaatcccagcagccaaaagaaatggttcgggtcattccaaaagtacacttgcacttatcgttctcatacaatatgt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0236E02-u8qcS/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0236E02.1" temp_strand="-" temp_description="C02HBa0236E02.1  AC215430.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0236E02 sequenced_by:kribb upload_account_name:korea">
        <position start="131776" stop="130689"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="131665" g_stop="131153" g_length="513"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="513" r_length="513" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="131152" i_stop="131081" i_length="72">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="131080" g_stop="130989" g_length="92"/>
          <reference_exon_boundary r_type="cDNA" r_start="514" r_stop="605" r_length="92" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0236E02.1" gen_strand="-" ref_id="SGN-E330304" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>605</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0236E02.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E330304" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="131665" e_stop="131153"/>
          <exon e_start="131080" e_stop="130989"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTGTGTTTTCCAGAAGAGAGACAATCTTCCGGAATCCGATTTTGATATCGGACTCCGCCATGGAAGATGACTAGAATATTTGCAAAGCCGGCGTCTCACCTCCGTCATTTACAGCAATCTTTGAAGAACAAATCATTTTCGAACGATGTGCCATGGTGGCGCCAAATTCTCGATCCAAACAGCGATATCGTCAATCGCTGGAACTATGTCTTCCTCCTTACCTGTCTCATCTCTCTTTTCATCGATCCACTCTACTTCTACGTACCTTTCGTCAGCGATAGAGCTTGTATGTCCACTGATGACGAAGCCGCCCGTGAAATTACCATCTATCGTTCTCTCACCGACATCTTTTACTTCCTTCACATTGCCATGAAGTTCCGCACAGCTTTTGTTGCTCCTAGCTCTAGGGTTTTCGGCCGGGGTGAGCTTGTTATGGATCCCCGTGAAATTGCTATACGATATCTCAAAACTGATTTCATCGTTGATTTTACAGCTGCTCTTCCCCTGCCTCAAGTCAGTACATATCCATTTAGTTTAATACTCTACTTTTATTATTGTTATTTTTAATTAATAGTGCCATTGCAGATTGTTATTCGCTATGTAATCCCAGCAGCCAAAAGAAATGGTTCGGGTCATTCCAAAAGTACACTTGCACTTATCGTTCTCATACAATATGT</genome_strand>
        <mrna_strand>TTGTGTTTTCCAGAAGAGAGACAATCTTCCGGAATCCGATTTTGATATCGGACTCCGCCATGGAAGATGACTAGAATATTTGCAAAGCCGGCGTCTCACCTCCGTCATTTACAGCAATCTTTGAAGAACAAATCATTTTCGAACGATGTGCCATGGTGGCGCCAAATTCTCGATCCAAACAGCGATATCGTCAATCGCTGGAACTATGTCTTCCTCCTTACCTGTCTCATCTCTCTTTTCATCGATCCACTCTACTTCTACGTACCTTTCGTCAGCGATAGAGCTTGTATGTCCACTGATGACGAAGCCGCCCGTGAAATTACCATCTATCGTTCTCTCACCGACATCTTTTACTTCCTTCACATTGCCATGAAGTTCCGCACAGCTTTTGTTGCTCCTAGCTCTAGGGTTTTCGGCCGGGGTGAGCTTGTTATGGATCCCCGTGAAATTGCTATACGATATCTCAAAACTGATTTCATCGTTGATTTTACAGCTGCTCTTCCCCTGCCTCAA........................................................................ATTGTTATTCGCTATGTAATCCCAGCAGCCAAAAGAAATGGTTCGGGTCATTCCAAAAGTACACTTGCACTTATCGTTCTCATACAATATGT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0236E02-u8qcS/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E334656" ref_strand="+" ref_description="SGN-E334656 [cTOD-23-F7]">
      <seq>tttcattcataatacaaaaaaattattggaatctgttgtgttttccagaagagagacaatcttccggaatccgattttgatatcggactccgccatggaagatgactagaatatttgcaaagccggcgtctcacctccgtcatttacagcaatctttgaagaacaaatcattttcgaacgatgtgccatggtggcgccaaattctcgatccaaacagcgatatcgtcaatcgctggaactatgtcttcctccttacctgtctcatctctcttttcatcgatccactctacttctacgtacctttcgtcagcgatagagcttgtatgtccactgatgacgaagccgcccgtgaaattaccatctatcgttctctcaccgacatcttttacttccttcacattgccatgaagttccgcacagcttttgttgctcctagctctagggttttcggccggggtgagcttgttatggatccccgtgaaattgctatacgatatctcaaaactgatttcatcgttgattttacagctgctcttcccctgcctcaaattgttattcgctatgtaatcccagcagccaaaagaaatgtntcgggtcattccaaaagtacacttgcacttatc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0236E02-u8qcS/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0236E02.1" temp_strand="-" temp_description="C02HBa0236E02.1  AC215430.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0236E02 sequenced_by:kribb upload_account_name:korea">
        <position start="131776" stop="130706"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="131700" g_stop="131153" g_length="548"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="548" r_length="548" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="131152" i_stop="131081" i_length="72">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="131080" g_stop="131006" g_length="75"/>
          <reference_exon_boundary r_type="cDNA" r_start="549" r_stop="623" r_length="75" r_score="0.973"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0236E02.1" gen_strand="-" ref_id="SGN-E334656" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>623</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0236E02.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E334656" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="131700" e_stop="131153"/>
          <exon e_start="131080" e_stop="131006"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTCATTCATAATACAAAAAAATTATTGGAATCTGTTGTGTTTTCCAGAAGAGAGACAATCTTCCGGAATCCGATTTTGATATCGGACTCCGCCATGGAAGATGACTAGAATATTTGCAAAGCCGGCGTCTCACCTCCGTCATTTACAGCAATCTTTGAAGAACAAATCATTTTCGAACGATGTGCCATGGTGGCGCCAAATTCTCGATCCAAACAGCGATATCGTCAATCGCTGGAACTATGTCTTCCTCCTTACCTGTCTCATCTCTCTTTTCATCGATCCACTCTACTTCTACGTACCTTTCGTCAGCGATAGAGCTTGTATGTCCACTGATGACGAAGCCGCCCGTGAAATTACCATCTATCGTTCTCTCACCGACATCTTTTACTTCCTTCACATTGCCATGAAGTTCCGCACAGCTTTTGTTGCTCCTAGCTCTAGGGTTTTCGGCCGGGGTGAGCTTGTTATGGATCCCCGTGAAATTGCTATACGATATCTCAAAACTGATTTCATCGTTGATTTTACAGCTGCTCTTCCCCTGCCTCAAGTCAGTACATATCCATTTAGTTTAATACTCTACTTTTATTATTGTTATTTTTAATTAATAGTGCCATTGCAGATTGTTATTCGCTATGTAATCCCAGCAGCCAAAAGAAATGGTTCGGGTCATTCCAAAAGTACACTTGCACTTATC</genome_strand>
        <mrna_strand>TTTCATTCATAATACAAAAAAATTATTGGAATCTGTTGTGTTTTCCAGAAGAGAGACAATCTTCCGGAATCCGATTTTGATATCGGACTCCGCCATGGAAGATGACTAGAATATTTGCAAAGCCGGCGTCTCACCTCCGTCATTTACAGCAATCTTTGAAGAACAAATCATTTTCGAACGATGTGCCATGGTGGCGCCAAATTCTCGATCCAAACAGCGATATCGTCAATCGCTGGAACTATGTCTTCCTCCTTACCTGTCTCATCTCTCTTTTCATCGATCCACTCTACTTCTACGTACCTTTCGTCAGCGATAGAGCTTGTATGTCCACTGATGACGAAGCCGCCCGTGAAATTACCATCTATCGTTCTCTCACCGACATCTTTTACTTCCTTCACATTGCCATGAAGTTCCGCACAGCTTTTGTTGCTCCTAGCTCTAGGGTTTTCGGCCGGGGTGAGCTTGTTATGGATCCCCGTGAAATTGCTATACGATATCTCAAAACTGATTTCATCGTTGATTTTACAGCTGCTCTTCCCCTGCCTCAA........................................................................ATTGTTATTCGCTATGTAATCCCAGCAGCCAAAAGAAATGTNTCGGGTCATTCCAAAAGTACACTTGCACTTATC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0236E02-u8qcS/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E363811" ref_strand="+" ref_description="SGN-E363811 [cLPP-3-B20]">
      <seq>ttattggaatctgttgtgttttccagaagagagataatcttccggaatccgattttgatatcggactccgccatggaagatgagtagaatatttgcaaagccggcgtctcacctccgtcatttacagcaatctttgaagaacaaatcattttcgaacgatgtgccatggtggcgccaaattctcgatccaaacagcgatatcgtcaatcgctggaactatgtcttcctccttacctgtctcatctctcttttcatcgatccactctacttctacgtacctttcgtcagcgatagagcttgtatgtccactgatgacgaagccgcccgtgaaattaccatctatcgttctctcaccgacatcttttacttccttcacattgccatgaagttccgcacagcttttgttgctccgagctctagggttttcggccggggtgagcttgttatggacccccgtgaaattgctatacgatatctcaaaactgatttcatcg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0236E02-u8qcS/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0236E02.1" temp_strand="-" temp_description="C02HBa0236E02.1  AC215430.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0236E02 sequenced_by:kribb upload_account_name:korea">
        <position start="131776" stop="130885"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="131678" g_stop="131185" g_length="494"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="494" r_length="494" r_score="0.992"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0236E02.1" gen_strand="-" ref_id="SGN-E363811" ref_strand="+">
        <total_alignment_score>0.992</total_alignment_score>
        <cumulative_length_of_scored_exons>494</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0236E02.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E363811" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="131678" e_stop="131185"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTATTGGAATCTGTTGTGTTTTCCAGAAGAGAGACAATCTTCCGGAATCCGATTTTGATATCGGACTCCGCCATGGAAGATGACTAGAATATTTGCAAAGCCGGCGTCTCACCTCCGTCATTTACAGCAATCTTTGAAGAACAAATCATTTTCGAACGATGTGCCATGGTGGCGCCAAATTCTCGATCCAAACAGCGATATCGTCAATCGCTGGAACTATGTCTTCCTCCTTACCTGTCTCATCTCTCTTTTCATCGATCCACTCTACTTCTACGTACCTTTCGTCAGCGATAGAGCTTGTATGTCCACTGATGACGAAGCCGCCCGTGAAATTACCATCTATCGTTCTCTCACCGACATCTTTTACTTCCTTCACATTGCCATGAAGTTCCGCACAGCTTTTGTTGCTCCTAGCTCTAGGGTTTTCGGCCGGGGTGAGCTTGTTATGGATCCCCGTGAAATTGCTATACGATATCTCAAAACTGATTTCATCG</genome_strand>
        <mrna_strand>TTATTGGAATCTGTTGTGTTTTCCAGAAGAGAGATAATCTTCCGGAATCCGATTTTGATATCGGACTCCGCCATGGAAGATGAGTAGAATATTTGCAAAGCCGGCGTCTCACCTCCGTCATTTACAGCAATCTTTGAAGAACAAATCATTTTCGAACGATGTGCCATGGTGGCGCCAAATTCTCGATCCAAACAGCGATATCGTCAATCGCTGGAACTATGTCTTCCTCCTTACCTGTCTCATCTCTCTTTTCATCGATCCACTCTACTTCTACGTACCTTTCGTCAGCGATAGAGCTTGTATGTCCACTGATGACGAAGCCGCCCGTGAAATTACCATCTATCGTTCTCTCACCGACATCTTTTACTTCCTTCACATTGCCATGAAGTTCCGCACAGCTTTTGTTGCTCCGAGCTCTAGGGTTTTCGGCCGGGGTGAGCTTGTTATGGACCCCCGTGAAATTGCTATACGATATCTCAAAACTGATTTCATCG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0236E02-u8qcS/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E330736" ref_strand="+" ref_description="SGN-E330736 [cTOD-8-F11]">
      <seq>aaaaaattattggaatctgttgtgttttccagaagagagacgatcttccggaatccgattttgatatcggactccgccatggaagatgactagaatatttgcaaagccggcgtctgacctccgtcatttacagcaatctttgaagaacaaatcattttcgaacgatgtgccatggtggcgccaaattctcgatccaaacagcgatatcgtcaatcgctggaactatgtcttgctccttacctgtctcatgtctcttttcatcgatccactctacttctacgtacctttcgtcagcgatcgagcttgtatgtccactgatgacgaagccgcccgtgaaattaccatctatcgttctctcaccgacatcttttacttgcttcacattgccatgaagttccgcacagctttt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0236E02-u8qcS/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0236E02.1" temp_strand="-" temp_description="C02HBa0236E02.1  AC215430.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0236E02 sequenced_by:kribb upload_account_name:korea">
        <position start="131776" stop="130976"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="131684" g_stop="131276" g_length="409"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="409" r_length="409" r_score="0.985"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0236E02.1" gen_strand="-" ref_id="SGN-E330736" ref_strand="+">
        <total_alignment_score>0.985</total_alignment_score>
        <cumulative_length_of_scored_exons>409</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0236E02.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E330736" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="131684" e_stop="131276"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAAAATTATTGGAATCTGTTGTGTTTTCCAGAAGAGAGACAATCTTCCGGAATCCGATTTTGATATCGGACTCCGCCATGGAAGATGACTAGAATATTTGCAAAGCCGGCGTCTCACCTCCGTCATTTACAGCAATCTTTGAAGAACAAATCATTTTCGAACGATGTGCCATGGTGGCGCCAAATTCTCGATCCAAACAGCGATATCGTCAATCGCTGGAACTATGTCTTCCTCCTTACCTGTCTCATCTCTCTTTTCATCGATCCACTCTACTTCTACGTACCTTTCGTCAGCGATAGAGCTTGTATGTCCACTGATGACGAAGCCGCCCGTGAAATTACCATCTATCGTTCTCTCACCGACATCTTTTACTTCCTTCACATTGCCATGAAGTTCCGCACAGCTTTT</genome_strand>
        <mrna_strand>AAAAAATTATTGGAATCTGTTGTGTTTTCCAGAAGAGAGACGATCTTCCGGAATCCGATTTTGATATCGGACTCCGCCATGGAAGATGACTAGAATATTTGCAAAGCCGGCGTCTGACCTCCGTCATTTACAGCAATCTTTGAAGAACAAATCATTTTCGAACGATGTGCCATGGTGGCGCCAAATTCTCGATCCAAACAGCGATATCGTCAATCGCTGGAACTATGTCTTGCTCCTTACCTGTCTCATGTCTCTTTTCATCGATCCACTCTACTTCTACGTACCTTTCGTCAGCGATCGAGCTTGTATGTCCACTGATGACGAAGCCGCCCGTGAAATTACCATCTATCGTTCTCTCACCGACATCTTTTACTTGCTTCACATTGCCATGAAGTTCCGCACAGCTTTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0236E02-u8qcS/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E294277" ref_strand="+" ref_description="SGN-E294277 [cLET-14-B22]">
      <seq>tttgatgaaaaaaggagcttcaatggaacactcttaattcattcttccttcttttctagcgctaattttcactcactgtttcattcataatacaaaaaaattattggaatctgttgtgttttccagaagagagacaatcttccggaatccgattttgatatcggactccgccatggaagatgactagaatatttgcaaagccggcgtctcacctccgtcatttacagcaatctttgaagaacaaatcattttcgaacgatgtgccatggtggcgccaaattctcgatccaaacagcgatatcgtcaatcgctggaactatgtcttcctccttacctgtctcatctctcttttcatcgatccactctacttctacgtacctttcgtcagcgatagagcttgtatgtccactgatga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0236E02-u8qcS/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0236E02.1" temp_strand="-" temp_description="C02HBa0236E02.1  AC215430.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0236E02 sequenced_by:kribb upload_account_name:korea">
        <position start="131776" stop="131064"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="131776" g_stop="131364" g_length="413"/>
          <reference_exon_boundary r_type="cDNA" r_start="3" r_stop="415" r_length="413" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0236E02.1" gen_strand="-" ref_id="SGN-E294277" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>413</cumulative_length_of_scored_exons>
        <coverage percentage="0.995" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0236E02.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E294277" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="131776" e_stop="131364"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGATGAAAAAAGGAGCTTCAATGGAACACTCTTAATTCATTCTTCCTTCTTTTCTAGCGCTAATTTTCACTCACTGTTTCATTCATAATACAAAAAAATTATTGGAATCTGTTGTGTTTTCCAGAAGAGAGACAATCTTCCGGAATCCGATTTTGATATCGGACTCCGCCATGGAAGATGACTAGAATATTTGCAAAGCCGGCGTCTCACCTCCGTCATTTACAGCAATCTTTGAAGAACAAATCATTTTCGAACGATGTGCCATGGTGGCGCCAAATTCTCGATCCAAACAGCGATATCGTCAATCGCTGGAACTATGTCTTCCTCCTTACCTGTCTCATCTCTCTTTTCATCGATCCACTCTACTTCTACGTACCTTTCGTCAGCGATAGAGCTTGTATGTCCACTGATGA</genome_strand>
        <mrna_strand>TGATGAAAAAAGGAGCTTCAATGGAACACTCTTAATTCATTCTTCCTTCTTTTCTAGCGCTAATTTTCACTCACTGTTTCATTCATAATACAAAAAAATTATTGGAATCTGTTGTGTTTTCCAGAAGAGAGACAATCTTCCGGAATCCGATTTTGATATCGGACTCCGCCATGGAAGATGACTAGAATATTTGCAAAGCCGGCGTCTCACCTCCGTCATTTACAGCAATCTTTGAAGAACAAATCATTTTCGAACGATGTGCCATGGTGGCGCCAAATTCTCGATCCAAACAGCGATATCGTCAATCGCTGGAACTATGTCTTCCTCCTTACCTGTCTCATCTCTCTTTTCATCGATCCACTCTACTTCTACGTACCTTTCGTCAGCGATAGAGCTTGTATGTCCACTGATGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0236E02-u8qcS/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E294278" ref_strand="+" ref_description="SGN-E294278 [cLET-14-B22](-)">
      <seq>tcatcagtggacatacaagctctatcgctgacgaaaggtacgtagaagtagagtggatcgatgaaaagagagatgagacaggtaaggaggaagacatagttccagcgattgacgatatcgctgtttggatcgagaatttggcgccaccatggcacatcgttcgaaaatgatttgttcttcaaagattgctgtaaatgacggaggtgagacgccggctttgcaaatattctagtcatcttccatggcggagtccgatatcaaaatcggattccggaagattgtctctcttctggaaaacacaacagattccaataatttttttgtattatgaatgaaacagtgagtgaaaattagcgctagaaaagaaggaagaatgaattaagagtgttccattgaagctccttttttcatcaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0236E02-u8qcS/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0236E02.1" temp_strand="+" temp_description="C02HBa0236E02.1  AC215430.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0236E02 sequenced_by:kribb upload_account_name:korea">
        <position start="131064" stop="131776"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="131364" g_stop="131776" g_length="413"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="413" r_length="413" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0236E02.1" gen_strand="+" ref_id="SGN-E294278" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>413</cumulative_length_of_scored_exons>
        <coverage percentage="0.995" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0236E02.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E294278" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="131364" e_stop="131776"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCATCAGTGGACATACAAGCTCTATCGCTGACGAAAGGTACGTAGAAGTAGAGTGGATCGATGAAAAGAGAGATGAGACAGGTAAGGAGGAAGACATAGTTCCAGCGATTGACGATATCGCTGTTTGGATCGAGAATTTGGCGCCACCATGGCACATCGTTCGAAAATGATTTGTTCTTCAAAGATTGCTGTAAATGACGGAGGTGAGACGCCGGCTTTGCAAATATTCTAGTCATCTTCCATGGCGGAGTCCGATATCAAAATCGGATTCCGGAAGATTGTCTCTCTTCTGGAAAACACAACAGATTCCAATAATTTTTTTGTATTATGAATGAAACAGTGAGTGAAAATTAGCGCTAGAAAAGAAGGAAGAATGAATTAAGAGTGTTCCATTGAAGCTCCTTTTTTCATCA</genome_strand>
        <mrna_strand>TCATCAGTGGACATACAAGCTCTATCGCTGACGAAAGGTACGTAGAAGTAGAGTGGATCGATGAAAAGAGAGATGAGACAGGTAAGGAGGAAGACATAGTTCCAGCGATTGACGATATCGCTGTTTGGATCGAGAATTTGGCGCCACCATGGCACATCGTTCGAAAATGATTTGTTCTTCAAAGATTGCTGTAAATGACGGAGGTGAGACGCCGGCTTTGCAAATATTCTAGTCATCTTCCATGGCGGAGTCCGATATCAAAATCGGATTCCGGAAGATTGTCTCTCTTCTGGAAAACACAACAGATTCCAATAATTTTTTTGTATTATGAATGAAACAGTGAGTGAAAATTAGCGCTAGAAAAGAAGGAAGAATGAATTAAGAGTGTTCCATTGAAGCTCCTTTTTTCATCA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
    <total_number_ESTs_reported>716</total_number_ESTs_reported>
    </alignment_module>
  <PGL_module xmlns="http://www.genomethreader.org/GTH_output/PGL_module/">
    <predicted_gene_location>
      <PGL_line PGL_serial="1" PGL_strand="+" PGL_start="451" PGL_stop="2659"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="451" e_stop="553"/>
            <exon e_start="672" e_stop="805"/>
            <exon e_start="2045" e_stop="2143"/>
            <exon e_start="2468" e_stop="2659"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.407" acc_prob="0.689" e_score="0.971"/>
          <exon-intron don_prob="1.000" acc_prob="0.868" e_score="0.985"/>
          <exon-intron don_prob="0.999" acc_prob="0.921" e_score="1.000"/>
          <exon-only e_score="0.917"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.971">
            <gDNA_exon_boundary e_start="451" e_stop="553" e_length="103"/>
          </exon>
          <intron i_serial="1" don_prob="0.407" acc_prob="0.689">
            <gDNA_intron_boundary i_start="554" i_stop="671" i_length="118"/>
          </intron>
          <exon e_serial="2" e_score="0.985">
            <gDNA_exon_boundary e_start="672" e_stop="805" e_length="134"/>
          </exon>
          <intron i_serial="2" don_prob="1.000" acc_prob="0.868">
            <gDNA_intron_boundary i_start="806" i_stop="2044" i_length="1239"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="2045" e_stop="2143" e_length="99"/>
          </exon>
          <intron i_serial="3" don_prob="0.999" acc_prob="0.921">
            <gDNA_intron_boundary i_start="2144" i_stop="2467" i_length="324"/>
          </intron>
          <exon e_serial="4" e_score="0.917">
            <gDNA_exon_boundary e_start="2468" e_stop="2659" e_length="192"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="451" stop="553"/>
              <exon start="672" stop="805"/>
              <exon start="2045" stop="2143"/>
              <exon start="2468" stop="2659"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E565350" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="1" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>GTCATTTGCTCTTGACAAAAAACTAGAAAAATCGTTCTTGGAGCTTGCAATAAATTGTGCATCTGTTATTTGCTGCCGCTCCACTCCTAAACAAAAAGCTCTT : ATATGCAGGTTACCAGACTGGTGAAAGTTGAAACACACCGAACTACATTAGCAATTGGGGATGGGGCAAATGATGTAAGCATGCTACAAGAGGCTGATGTTGGGGTTGGCATCAGTGGTGTTGAAGGAATGCAG : GCTGTCATGTCAAGTGATTATGCAATAGCTCAATTCCGTTTTCTTGAGCGCTTGTTATTGGTCCATGGCCACTGGTGCTACAGGAGAATATCGATGATG : CTATGCTACTTCTTTTACAAGAACATCGCCTTCGGGTTGACCCTTTTCTGGTTCGAGGGCTTTGCTTCTTTCTCTGGCCGACCTGCTTATAATGACTGGTATATGTCATTATATAATGTGTTCTTCACATCGCTTCCTGTGATTGCTCTCGGTGTCTTTGATCAGGATGTTTCTGCCCGCCTATGTCTCGAG</gDNA_template>
            <first_frame> V  I  C  S  *  Q  K  T  R  K  I  V  L  G  A  C  N  K  L  C  I  C  Y  L  L  P  L  H  S  *  T  K  S  S   : Y  M  Q  V  T  R  L  V  K  V  E  T  H  R  T  T  L  A  I  G  D  G  A  N  D  V  S  M  L  Q  E  A  D  V  G  V  G  I  S  G  V  E  G  M  Q  :  A  V  M  S  S  D  Y  A  I  A  Q  F  R  F  L  E  R  L  L  L  V  H  G  H  W  C  Y  R  R  I  S  M  M  :  L  C  Y  F  F  Y  K  N  I  A  F  G  L  T  L  F  W  F  E  G  F  A  S  F  S  G  R  P  A  Y  N  D  W  Y  M  S  L  Y  N  V  F  F  T  S  L  P  V  I  A  L  G  V  F  D  Q  D  V  S  A  R  L  C  L  E </first_frame>
            <second_frame>  S  F  A  L  D  K  K  L  E  K  S  F  L  E  L  A  I  N  C  A  S  V  I  C  C  R  S  T  P  K  Q  K  A  L  :  I  C  R  L  P  D  W  *  K  L  K  H  T  E  L  H  *  Q  L  G  M  G  Q  M  M  *  A  C  Y  K  R  L  M  L  G  L  A  S  V  V  L  K  E  C  R :   L  S  C  Q  V  I  M  Q  *  L  N  S  V  F  L  S  A  C  Y  W  S  M  A  T  G  A  T  G  E  Y  R  *  C :   Y  A  T  S  F  T  R  T  S  P  S  G  *  P  F  S  G  S  R  A  L  L  L  S  L  A  D  L  L  I  M  T  G  I  C  H  Y  I  M  C  S  S  H  R  F  L  *  L  L  S  V  S  L  I  R  M  F  L  P  A  Y  V  S   </second_frame>
            <third_frame>   H  L  L  L  T  K  N  *  K  N  R  S  W  S  L  Q  *  I  V  H  L  L  F  A  A  A  P  L  L  N  K  K  L  L :   Y  A  G  Y  Q  T  G  E  S  *  N  T  P  N  Y  I  S  N  W  G  W  G  K  *  C  K  H  A  T  R  G  *  C  W  G  W  H  Q  W  C  *  R  N  A   : G  C  H  V  K  *  L  C  N  S  S  I  P  F  S  *  A  L  V  I  G  P  W  P  L  V  L  Q  E  N  I  D  D   : A  M  L  L  L  L  Q  E  H  R  L  R  V  D  P  F  L  V  R  G  L  C  F  F  L  W  P  T  C  L  *  *  L  V  Y  V  I  I  *  C  V  L  H  I  A  S  C  D  C  S  R  C  L  *  S  G  C  F  C  P  P  M  S  R  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02HBa0236E02.1" strand="+"/>
                <serials PGL_serial="1" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="541" stop="553"/>
                    <exon start="672" stop="805"/>
                    <exon start="2045" stop="2143"/>
                    <exon start="2468" stop="2659"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>438</number_coding_nucleotides>
                  <number_encoded_amino_acids>146</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>TKSSYMQVTRLVKVETHRTTLAIGDGANDVSMLQEADVGVGISGVEGMQAVMSSDYAIAQFRFLERLLLVHGHWCYRRISMMLCYFFYKNIAFGLTLFWFEGFASFSGRPAYNDWYMSLYNVFFTSLPVIALGVFDQDVSARLCLE</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="2" PGL_strand="-" PGL_start="4017" PGL_stop="3386"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="4017" e_stop="3386"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.908"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.908">
            <gDNA_exon_boundary e_start="4017" e_stop="3386" e_length="632"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="4017" stop="3386"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E425597" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="2" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>TTAAATCAAATCCTTTACCAAAAGGGATGTTTTTAGAATGTTACAATGATAATAAATTCCACCTCAAAATGTTAGTTTCTACTTTCCTAGCCCTATTCACTCAGTATTGTTATATATCTACTTTACACAACTTGATTAACTTTACAAATTAAACAGTCAATTATAAACTACAAACTAAATATTAAAGATCTATCTTTTGTTTGCCTCTGTCACTGGACTCCTCAGAAAAGTCACTGTTTAAACTTTCGAATTGTTTCCTTTGAATCTGATCATGGTACATAGGATGGAACTGTGTTTGAAATGCCCTGTACGTAACGTATGGTAACAAAGTGGCAACGACAACCAGGAGTGTGACAAGCCAAAAGAAAGGACTCGGAGCACAAGCTTCCACAAGAATTTTGTACGCGGTTGTAGATATTATAGGCGAAAGAGAGCCATAAACAACTAAAAACACGTACCAAATGGCAATGCTGCCCCAAATGAAGAAGTGCTGAATCCAAGTGAAGTAGTTGATAGAGATTGCCATTTGACAATTGACTGTCCACACCACACACGTGTACATCATCACCCCGAGGACTCCGTAGTCAACTGGTTGACCATCTTTTCGGAATACTTGATGCACGAGTGAATTG</gDNA_template>
            <first_frame> L  N  Q  I  L  Y  Q  K  G  C  F  *  N  V  T  M  I  I  N  S  T  S  K  C  *  F  L  L  S  *  P  Y  S  L  S  I  V  I  Y  L  L  Y  T  T  *  L  T  L  Q  I  K  Q  S  I  I  N  Y  K  L  N  I  K  D  L  S  F  V  C  L  C  H  W  T  P  Q  K  S  H  C  L  N  F  R  I  V  S  F  E  S  D  H  G  T  *  D  G  T  V  F  E  M  P  C  T  *  R  M  V  T  K  W  Q  R  Q  P  G  V  *  Q  A  K  R  K  D  S  E  H  K  L  P  Q  E  F  C  T  R  L  *  I  L  *  A  K  E  S  H  K  Q  L  K  T  R  T  K  W  Q  C  C  P  K  *  R  S  A  E  S  K  *  S  S  *  *  R  L  P  F  D  N  *  L  S  T  P  H  T  C  T  S  S  P  R  G  L  R  S  Q  L  V  D  H  L  F  G  I  L  D  A  R  V  N   </first_frame>
            <second_frame>  *  I  K  S  F  T  K  R  D  V  F  R  M  L  Q  *  *  *  I  P  P  Q  N  V  S  F  Y  F  P  S  P  I  H  S  V  L  L  Y  I  Y  F  T  Q  L  D  *  L  Y  K  L  N  S  Q  L  *  T  T  N  *  I  L  K  I  Y  L  L  F  A  S  V  T  G  L  L  R  K  V  T  V  *  T  F  E  L  F  P  L  N  L  I  M  V  H  R  M  E  L  C  L  K  C  P  V  R  N  V  W  *  Q  S  G  N  D  N  Q  E  C  D  K  P  K  E  R  T  R  S  T  S  F  H  K  N  F  V  R  G  C  R  Y  Y  R  R  K  R  A  I  N  N  *  K  H  V  P  N  G  N  A  A  P  N  E  E  V  L  N  P  S  E  V  V  D  R  D  C  H  L  T  I  D  C  P  H  H  T  R  V  H  H  H  P  E  D  S  V  V  N  W  L  T  I  F  S  E  Y  L  M  H  E  *  I  </second_frame>
            <third_frame>   K  S  N  P  L  P  K  G  M  F  L  E  C  Y  N  D  N  K  F  H  L  K  M  L  V  S  T  F  L  A  L  F  T  Q  Y  C  Y  I  S  T  L  H  N  L  I  N  F  T  N  *  T  V  N  Y  K  L  Q  T  K  Y  *  R  S  I  F  C  L  P  L  S  L  D  S  S  E  K  S  L  F  K  L  S  N  C  F  L  *  I  *  S  W  Y  I  G  W  N  C  V  *  N  A  L  Y  V  T  Y  G  N  K  V  A  T  T  T  R  S  V  T  S  Q  K  K  G  L  G  A  Q  A  S  T  R  I  L  Y  A  V  V  D  I  I  G  E  R  E  P  *  T  T  K  N  T  Y  Q  M  A  M  L  P  Q  M  K  K  C  *  I  Q  V  K  *  L  I  E  I  A  I  *  Q  L  T  V  H  T  T  H  V  Y  I  I  T  P  R  T  P  *  S  T  G  *  P  S  F  R  N  T  *  C  T  S  E  L </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <none gDNA_id="C02HBa0236E02.1"/>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="3" PGL_strand="+" PGL_start="7037" PGL_stop="8056"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="7037" e_stop="8056"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.922"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.922">
            <gDNA_exon_boundary e_start="7037" e_stop="8056" e_length="1020"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="7037" stop="7758"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E420647" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="7037" stop="7592"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E406566" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="7371" stop="8056"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E356679" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="7371" stop="8051"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E355115" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="7515" stop="8016"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E354769" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="3" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>TTATGAAATTACAACTACTCACATGCAGGAAGACGAATTTTTTTCTCCGAGCTTTAGTAGCTACTCTTCAAATAGAGTGGCCGAGATTGCCGGAAAAATCTCCGATGAAATTAAGCGTGATTCTCAGGTGGTAGAAGAGAACGTTGACGGTGCCGATGGAGATGAAGATTTTGAATTCTCTTTGGTTTGTGAAAATCCAGAGGATTCGGTCGGCGTATTCCCCTTCGACCGTCCTATTTACCCCGTTTTCAACCGCGATCTGATACCAAACGATGTTTCTTATGGCGTAGATCGAGAAGGTGTTAACGGTGAATCGTCGGAAAACGTCAATAGTTCAGTTCAAGTTTCGTTAAAGGATTTATTCTTAGAAGAACGGGAACCGCTGTCGTCGTCATCTTCCGAGGTCGATGAGTTGGAGAGTGTACCTCCGGGAACGTATTGTGTATGGAAGCCGAATATAACCGAGCCTTCACCAAGCAGATGTAAGAAGAGTAATTCAACGGGATCGGCGTTTAAGCGGTGGAATATCCGAGATTTGATGCGCCGGAGCAACAGTGACGGTAAGGACAGTTTTTTATTTCTGACGCCGGAAAAAGGATTGAGAAATGAAACATCCAAAGCAAAGGACTCAGCGGAAGCGTCTAAAATTGCCGGAAAATTGAAGGCAAAGGGCAACAGTAGCAGCGGTAACAAAACATCTTCGATGACGGACGTTTATTTACGGAACCAAGCGGCAAAGGAAATGGATAAGAATAGGCGCAAATCATATTTACCATACCGGCGAGATCTGGTAGGTTTTTTCGCTAGTGCCAGCAATATTGGTAGAACTTTTCCTCCTTTTTAACAACCTTCCATTTTTTAATCAAGTGTTTGTAAATATCTAAATGAAAGAACATGTGCGATGATTCCTGAATGATTTAGTTGTTATGCTCCCATTTGTTTAAAGGATGATCATCCACCTCGATAATAATTTTCGATGAATTTTTCATATTATCTATGAATTAAATTTGATAATTTTTA</gDNA_template>
            <first_frame> L  *  N  Y  N  Y  S  H  A  G  R  R  I  F  F  S  E  L  *  *  L  L  F  K  *  S  G  R  D  C  R  K  N  L  R  *  N  *  A  *  F  S  G  G  R  R  E  R  *  R  C  R  W  R  *  R  F  *  I  L  F  G  L  *  K  S  R  G  F  G  R  R  I  P  L  R  P  S  Y  L  P  R  F  Q  P  R  S  D  T  K  R  C  F  L  W  R  R  S  R  R  C  *  R  *  I  V  G  K  R  Q  *  F  S  S  S  F  V  K  G  F  I  L  R  R  T  G  T  A  V  V  V  I  F  R  G  R  *  V  G  E  C  T  S  G  N  V  L  C  M  E  A  E  Y  N  R  A  F  T  K  Q  M  *  E  E  *  F  N  G  I  G  V  *  A  V  E  Y  P  R  F  D  A  P  E  Q  Q  *  R  *  G  Q  F  F  I  S  D  A  G  K  R  I  E  K  *  N  I  Q  S  K  G  L  S  G  S  V  *  N  C  R  K  I  E  G  K  G  Q  Q  *  Q  R  *  Q  N  I  F  D  D  G  R  L  F  T  E  P  S  G  K  G  N  G  *  E  *  A  Q  I  I  F  T  I  P  A  R  S  G  R  F  F  R  *  C  Q  Q  Y  W  *  N  F  S  S  F  L  T  T  F  H  F  L  I  K  C  L  *  I  S  K  *  K  N  M  C  D  D  S  *  M  I  *  L  L  C  S  H  L  F  K  G  *  S  S  T  S  I  I  I  F  D  E  F  F  I  L  S  M  N  *  I  *  *  F  L </first_frame>
            <second_frame>  Y  E  I  T  T  T  H  M  Q  E  D  E  F  F  S  P  S  F  S  S  Y  S  S  N  R  V  A  E  I  A  G  K  I  S  D  E  I  K  R  D  S  Q  V  V  E  E  N  V  D  G  A  D  G  D  E  D  F  E  F  S  L  V  C  E  N  P  E  D  S  V  G  V  F  P  F  D  R  P  I  Y  P  V  F  N  R  D  L  I  P  N  D  V  S  Y  G  V  D  R  E  G  V  N  G  E  S  S  E  N  V  N  S  S  V  Q  V  S  L  K  D  L  F  L  E  E  R  E  P  L  S  S  S  S  S  E  V  D  E  L  E  S  V  P  P  G  T  Y  C  V  W  K  P  N  I  T  E  P  S  P  S  R  C  K  K  S  N  S  T  G  S  A  F  K  R  W  N  I  R  D  L  M  R  R  S  N  S  D  G  K  D  S  F  L  F  L  T  P  E  K  G  L  R  N  E  T  S  K  A  K  D  S  A  E  A  S  K  I  A  G  K  L  K  A  K  G  N  S  S  S  G  N  K  T  S  S  M  T  D  V  Y  L  R  N  Q  A  A  K  E  M  D  K  N  R  R  K  S  Y  L  P  Y  R  R  D  L  V  G  F  F  A  S  A  S  N  I  G  R  T  F  P  P  F  *  Q  P  S  I  F  *  S  S  V  C  K  Y  L  N  E  R  T  C  A  M  I  P  E  *  F  S  C  Y  A  P  I  C  L  K  D  D  H  P  P  R  *  *  F  S  M  N  F  S  Y  Y  L  *  I  K  F  D  N  F   </second_frame>
            <third_frame>   M  K  L  Q  L  L  T  C  R  K  T  N  F  F  L  R  A  L  V  A  T  L  Q  I  E  W  P  R  L  P  E  K  S  P  M  K  L  S  V  I  L  R  W  *  K  R  T  L  T  V  P  M  E  M  K  I  L  N  S  L  W  F  V  K  I  Q  R  I  R  S  A  Y  S  P  S  T  V  L  F  T  P  F  S  T  A  I  *  Y  Q  T  M  F  L  M  A  *  I  E  K  V  L  T  V  N  R  R  K  T  S  I  V  Q  F  K  F  R  *  R  I  Y  S  *  K  N  G  N  R  C  R  R  H  L  P  R  S  M  S  W  R  V  Y  L  R  E  R  I  V  Y  G  S  R  I  *  P  S  L  H  Q  A  D  V  R  R  V  I  Q  R  D  R  R  L  S  G  G  I  S  E  I  *  C  A  G  A  T  V  T  V  R  T  V  F  Y  F  *  R  R  K  K  D  *  E  M  K  H  P  K  Q  R  T  Q  R  K  R  L  K  L  P  E  N  *  R  Q  R  A  T  V  A  A  V  T  K  H  L  R  *  R  T  F  I  Y  G  T  K  R  Q  R  K  W  I  R  I  G  A  N  H  I  Y  H  T  G  E  I  W  *  V  F  S  L  V  P  A  I  L  V  E  L  F  L  L  F  N  N  L  P  F  F  N  Q  V  F  V  N  I  *  M  K  E  H  V  R  *  F  L  N  D  L  V  V  M  L  P  F  V  *  R  M  I  I  H  L  D  N  N  F  R  *  I  F  H  I  I  Y  E  L  N  L  I  I  F  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02HBa0236E02.1" strand="+"/>
                <serials PGL_serial="3" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="7038" stop="7880"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>840</number_coding_nucleotides>
                  <number_encoded_amino_acids>280</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>YEITTTHMQEDEFFSPSFSSYSSNRVAEIAGKISDEIKRDSQVVEENVDGADGDEDFEFSLVCENPEDSVGVFPFDRPIYPVFNRDLIPNDVSYGVDREGVNGESSENVNSSVQVSLKDLFLEEREPLSSSSSEVDELESVPPGTYCVWKPNITEPSPSRCKKSNSTGSAFKRWNIRDLMRRSNSDGKDSFLFLTPEKGLRNETSKAKDSAEASKIAGKLKAKGNSSSGNKTSSMTDVYLRNQAAKEMDKNRRKSYLPYRRDLVGFFASASNIGRTFPPF*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="4" PGL_strand="+" PGL_start="14732" PGL_stop="18571"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="14732" e_stop="15182"/>
            <exon e_start="16380" e_stop="16441"/>
            <exon e_start="16814" e_stop="16957"/>
            <exon e_start="17056" e_stop="17104"/>
            <exon e_start="17189" e_stop="17305"/>
            <exon e_start="17391" e_stop="17530"/>
            <exon e_start="17608" e_stop="17713"/>
            <exon e_start="17794" e_stop="18328"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="1.000" acc_prob="0.971" e_score="1.000"/>
          <exon-intron don_prob="0.999" acc_prob="1.000" e_score="1.000"/>
          <exon-intron don_prob="0.999" acc_prob="0.999" e_score="1.000"/>
          <exon-intron don_prob="1.000" acc_prob="0.961" e_score="1.000"/>
          <exon-intron don_prob="0.999" acc_prob="0.979" e_score="1.000"/>
          <exon-intron don_prob="0.999" acc_prob="0.948" e_score="1.000"/>
          <exon-intron don_prob="1.000" acc_prob="0.997" e_score="1.000"/>
          <exon-only e_score="0.927"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="14732" e_stop="15182" e_length="451"/>
          </exon>
          <intron i_serial="1" don_prob="1.000" acc_prob="0.971">
            <gDNA_intron_boundary i_start="15183" i_stop="16379" i_length="1197"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="16380" e_stop="16441" e_length="62"/>
          </exon>
          <intron i_serial="2" don_prob="0.999" acc_prob="1.000">
            <gDNA_intron_boundary i_start="16442" i_stop="16813" i_length="372"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="16814" e_stop="16957" e_length="144"/>
          </exon>
          <intron i_serial="3" don_prob="0.999" acc_prob="0.999">
            <gDNA_intron_boundary i_start="16958" i_stop="17055" i_length="98"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="17056" e_stop="17104" e_length="49"/>
          </exon>
          <intron i_serial="4" don_prob="1.000" acc_prob="0.961">
            <gDNA_intron_boundary i_start="17105" i_stop="17188" i_length="84"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="17189" e_stop="17305" e_length="117"/>
          </exon>
          <intron i_serial="5" don_prob="0.999" acc_prob="0.979">
            <gDNA_intron_boundary i_start="17306" i_stop="17390" i_length="85"/>
          </intron>
          <exon e_serial="6" e_score="1.000">
            <gDNA_exon_boundary e_start="17391" e_stop="17530" e_length="140"/>
          </exon>
          <intron i_serial="6" don_prob="0.999" acc_prob="0.948">
            <gDNA_intron_boundary i_start="17531" i_stop="17607" i_length="77"/>
          </intron>
          <exon e_serial="7" e_score="1.000">
            <gDNA_exon_boundary e_start="17608" e_stop="17713" e_length="106"/>
          </exon>
          <intron i_serial="7" don_prob="1.000" acc_prob="0.997">
            <gDNA_intron_boundary i_start="17714" i_stop="17793" i_length="80"/>
          </intron>
          <exon e_serial="8" e_score="0.927">
            <gDNA_exon_boundary e_start="17794" e_stop="18328" e_length="535"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="14732" stop="15182"/>
              <exon start="16380" stop="16441"/>
              <exon start="16814" stop="16957"/>
              <exon start="17056" stop="17104"/>
              <exon start="17189" stop="17305"/>
              <exon start="17391" stop="17530"/>
              <exon start="17608" stop="17713"/>
              <exon start="17794" stop="18148"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E747061" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="14732" stop="15179"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E390600" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="14733" stop="15182"/>
              <exon start="16380" stop="16441"/>
              <exon start="16814" stop="16957"/>
              <exon start="17056" stop="17104"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E334497" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="14733" stop="15182"/>
              <exon start="16380" stop="16399"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E284193" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="14764" stop="15182"/>
              <exon start="16380" stop="16441"/>
              <exon start="16814" stop="16919"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E476672" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="14766" stop="15182"/>
              <exon start="16380" stop="16408"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E404588" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="14925" stop="15182"/>
              <exon start="16380" stop="16441"/>
              <exon start="16814" stop="16957"/>
              <exon start="17056" stop="17104"/>
              <exon start="17189" stop="17223"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E725560" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="14927" stop="15182"/>
              <exon start="16380" stop="16441"/>
              <exon start="16814" stop="16957"/>
              <exon start="17056" stop="17104"/>
              <exon start="17189" stop="17305"/>
              <exon start="17391" stop="17400"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E395231" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="14928" stop="15182"/>
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              <exon start="17401" stop="17530"/>
              <exon start="17608" stop="17713"/>
              <exon start="17794" stop="18087"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E285134" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="17435" stop="17530"/>
              <exon start="17608" stop="17713"/>
              <exon start="17794" stop="18157"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E366177" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="17441" stop="17530"/>
              <exon start="17608" stop="17713"/>
              <exon start="17794" stop="18105"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E295890" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="17473" stop="17530"/>
              <exon start="17608" stop="17713"/>
              <exon start="17794" stop="18035"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E293777" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="17475" stop="17530"/>
              <exon start="17608" stop="17713"/>
              <exon start="17794" stop="18158"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E734573" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="17475" stop="17530"/>
              <exon start="17608" stop="17713"/>
              <exon start="17794" stop="18129"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E297794" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="17476" stop="17530"/>
              <exon start="17608" stop="17713"/>
              <exon start="17794" stop="18158"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E734337" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="17486" stop="17530"/>
              <exon start="17608" stop="17713"/>
              <exon start="17794" stop="18155"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E734148" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="17487" stop="17530"/>
              <exon start="17608" stop="17713"/>
              <exon start="17794" stop="18328"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E740588" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="17503" stop="17530"/>
              <exon start="17608" stop="17713"/>
              <exon start="17794" stop="18158"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E291224" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="17519" stop="17530"/>
              <exon start="17608" stop="17713"/>
              <exon start="17794" stop="18119"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E294938" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="17611" stop="17713"/>
              <exon start="17794" stop="18145"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E545781" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="17615" stop="17713"/>
              <exon start="17794" stop="18081"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E390842" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="17623" stop="17713"/>
              <exon start="17794" stop="18133"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E278439" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="17672" stop="17713"/>
              <exon start="17794" stop="18160"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E397296" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="17675" stop="17713"/>
              <exon start="17794" stop="18134"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E237382" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="17676" stop="17713"/>
              <exon start="17794" stop="18049"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E378485" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="17678" stop="17713"/>
              <exon start="17794" stop="18134"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E237283" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="17681" stop="17713"/>
              <exon start="17794" stop="18145"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E290956" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="17704" stop="17713"/>
              <exon start="17794" stop="18130"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E288144" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="17797" stop="18134"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E234581" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="17910" stop="18159"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E297630" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="17943" stop="18156"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E287260" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="4" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>TTGAAATGTAAGGTTCTTGGCTTCTTAGCCATATGATATTAAGGCAAAAGTAAGATACAACATTGAATCTCCAACGTACAAACCTCATCTACAATGGATTGAAGCTCTCATTTGCTTAGCCATCACTTTCAACATTGTCTATTGGATTGGTTATATGTAAGAGTTCAAAAGCAGCAATAATCAAGAACACATCACTAGCTATACTATTACTAGTTAGTAACAAAGTAGTATAAAGGGCAAGCAAAAGCTAAAGGAAGCTCATTGAGAAATGTCAACTGCTTCCATTAACAATTGCCTTACTCTCTCCCCTGCTCAAGCTTCCCTTAAGAAACCTACTCGTCCCGTTGCCTTCGCAAGGCTTGGCAACTCTTCTTCTTCTTCTTCTATTCCAAGTCTCATCAGAAACGAGCCCGTCTTTGCTGCCCCTACTCCCATCATCAACCCCATTGTG : AGAGAAGAAATGGCAAAAGAATCCTACGATCAAGCCATTGCTGCACTCGAGAAACTCCTCAG : CGAGAAAGCAGAACTTGGACCAGTTGCTGCAGCAAGAGTTGACCAGATCACTGCTGAATTGAAATCAGCAGACGGCGGCAAGGCATTCGACCCTGTTGAGCACATGAAAGCTGGCTTTATTCATTTCAAGACTGAGAAATATGA : CACAAACCCAGCCTTATATGGTGAGCTAGCAAAGGGCCAGAGCCCTAAG : TTCATGGTTTTCGCGTGCTCTGACTCACGAGTCTGCCCATCCCATGTCCTCAACTTCCAACCTGGTGAGGCATTCATGGTTCGTAACATCGCCAACATGGTCCCTGCTTATGACAAG : GTCAGGTACTCTGGAGTAGGAGCAGCCATTGAATACGCCGTTCTTCATCTTAAGGTGGAGAACATCGTTGTCATTGGCCACAGTGCTTGTGGAGGTATCAAAGGTCTCATGTCACTACCTGAAGATGGTAGTGAATCAAC : TGCCTTTATTGAGGATTGGGTAAAAATTTGTTTACCTGCCAAGGCAAAGGTTCTGGCCGATCACGGAGGGAAAGAATTTGCACATCAATGCACAGCTTGTGAGAAG : GAAGCTGTGAACGTTTCACTTGGAAATCTGCTTACGTATCCATTCGTGAGAGAAGGATTGGTGAAGAAAACATTGGCATTGAAGGGAGGTTACTATGATTTCGTGAAGGGTGGATTTGAGCTGTGGGGACTTGAGTTCGGTCTTTCTCCTCCTCTTTCCGTATGAACTTAATTCAATTACCATTTGGCCCTCACAATTTCCTTCCTTTTTTTTTTTTTCGCCTGACAGTACTTTTGCTTCGCAAAATCAACTGTGTGTATGTTGTTTGTATGTATTATGTATGTATGAATCAAATATGGAAGAGCACTCGTTGTTATATTTCTGAAATAAATAAAATGGAGACTACTTTTTGTATAAATACGTTTGTGGTGGGCTTTGGTAGGTAAAAGATGTGGCCAGTATACTGCACTGGAAGCTCATGTAGAGACAGAGAGATCGTCAAGCAACAAGAGGATTCCCAGATTTAATCTGTTATTCTTGCTCATGTAGACCAAAAATTGGCCATAATAATCTACAAACACTCTTTTCGGCTACA</gDNA_template>
            <first_frame> L  K  C  K  V  L  G  F  L  A  I  *  Y  *  G  K  S  K  I  Q  H  *  I  S  N  V  Q  T  S  S  T  M  D  *  S  S  H  L  L  S  H  H  F  Q  H  C  L  L  D  W  L  Y  V  R  V  Q  K  Q  Q  *  S  R  T  H  H  *  L  Y  Y  Y  *  L  V  T  K  *  Y  K  G  Q  A  K  A  K  G  S  S  L  R  N  V  N  C  F  H  *  Q  L  P  Y  S  L  P  C  S  S  F  P  *  E  T  Y  S  S  R  C  L  R  K  A  W  Q  L  F  F  F  F  F  Y  S  K  S  H  Q  K  R  A  R  L  C  C  P  Y  S  H  H  Q  P  H  C   : E  R  R  N  G  K  R  I  L  R  S  S  H  C  C  T  R  E  T  P  Q  :  R  E  S  R  T  W  T  S  C  C  S  K  S  *  P  D  H  C  *  I  E  I  S  R  R  R  Q  G  I  R  P  C  *  A  H  E  S  W  L  Y  S  F  Q  D  *  E  I  *  :  H  K  P  S  L  I  W  *  A  S  K  G  P  E  P  *   : V  H  G  F  R  V  L  *  L  T  S  L  P  I  P  C  P  Q  L  P  T  W  *  G  I  H  G  S  *  H  R  Q  H  G  P  C  L  *  Q   : G  Q  V  L  W  S  R  S  S  H  *  I  R  R  S  S  S  *  G  G  E  H  R  C  H  W  P  Q  C  L  W  R  Y  Q  R  S  H  V  T  T  *  R  W  *  *  I  N  :  C  L  Y  *  G  L  G  K  N  L  F  T  C  Q  G  K  G  S  G  R  S  R  R  E  R  I  C  T  S  M  H  S  L  *  E   : G  S  C  E  R  F  T  W  K  S  A  Y  V  S  I  R  E  R  R  I  G  E  E  N  I  G  I  E  G  R  L  L  *  F  R  E  G  W  I  *  A  V  G  T  *  V  R  S  F  S  S  S  F  R  M  N  L  I  Q  L  P  F  G  P  H  N  F  L  P  F  F  F  F  R  L  T  V  L  L  L  R  K  I  N  C  V  Y  V  V  C  M  Y  Y  V  C  M  N  Q  I  W  K  S  T  R  C  Y  I  S  E  I  N  K  M  E  T  T  F  C  I  N  T  F  V  V  G  F  G  R  *  K  M  W  P  V  Y  C  T  G  S  S  C  R  D  R  E  I  V  K  Q  Q  E  D  S  Q  I  *  S  V  I  L  A  H  V  D  Q  K  L  A  I  I  I  Y  K  H  S  F  R  L   </first_frame>
            <second_frame>  *  N  V  R  F  L  A  S  *  P  Y  D  I  K  A  K  V  R  Y  N  I  E  S  P  T  Y  K  P  H  L  Q  W  I  E  A  L  I  C  L  A  I  T  F  N  I  V  Y  W  I  G  Y  M  *  E  F  K  S  S  N  N  Q  E  H  I  T  S  Y  T  I  T  S  *  *  Q  S  S  I  K  G  K  Q  K  L  K  E  A  H  *  E  M  S  T  A  S  I  N  N  C  L  T  L  S  P  A  Q  A  S  L  K  K  P  T  R  P  V  A  F  A  R  L  G  N  S  S  S  S  S  S  I  P  S  L  I  R  N  E  P  V  F  A  A  P  T  P  I  I  N  P  I  V  :  R  E  E  M  A  K  E  S  Y  D  Q  A  I  A  A  L  E  K  L  L  S :   E  K  A  E  L  G  P  V  A  A  A  R  V  D  Q  I  T  A  E  L  K  S  A  D  G  G  K  A  F  D  P  V  E  H  M  K  A  G  F  I  H  F  K  T  E  K  Y  D :   T  N  P  A  L  Y  G  E  L  A  K  G  Q  S  P  K  :  F  M  V  F  A  C  S  D  S  R  V  C  P  S  H  V  L  N  F  Q  P  G  E  A  F  M  V  R  N  I  A  N  M  V  P  A  Y  D  K  :  V  R  Y  S  G  V  G  A  A  I  E  Y  A  V  L  H  L  K  V  E  N  I  V  V  I  G  H  S  A  C  G  G  I  K  G  L  M  S  L  P  E  D  G  S  E  S  T :   A  F  I  E  D  W  V  K  I  C  L  P  A  K  A  K  V  L  A  D  H  G  G  K  E  F  A  H  Q  C  T  A  C  E  K  :  E  A  V  N  V  S  L  G  N  L  L  T  Y  P  F  V  R  E  G  L  V  K  K  T  L  A  L  K  G  G  Y  Y  D  F  V  K  G  G  F  E  L  W  G  L  E  F  G  L  S  P  P  L  S  V  *  T  *  F  N  Y  H  L  A  L  T  I  S  F  L  F  F  F  F  A  *  Q  Y  F  C  F  A  K  S  T  V  C  M  L  F  V  C  I  M  Y  V  *  I  K  Y  G  R  A  L  V  V  I  F  L  K  *  I  K  W  R  L  L  F  V  *  I  R  L  W  W  A  L  V  G  K  R  C  G  Q  Y  T  A  L  E  A  H  V  E  T  E  R  S  S  S  N  K  R  I  P  R  F  N  L  L  F  L  L  M  *  T  K  N  W  P  *  *  S  T  N  T  L  F  G  Y  </second_frame>
            <third_frame>   E  M  *  G  S  W  L  L  S  H  M  I  L  R  Q  K  *  D  T  T  L  N  L  Q  R  T  N  L  I  Y  N  G  L  K  L  S  F  A  *  P  S  L  S  T  L  S  I  G  L  V  I  C  K  S  S  K  A  A  I  I  K  N  T  S  L  A  I  L  L  L  V  S  N  K  V  V  *  R  A  S  K  S  *  R  K  L  I  E  K  C  Q  L  L  P  L  T  I  A  L  L  S  P  L  L  K  L  P  L  R  N  L  L  V  P  L  P  S  Q  G  L  A  T  L  L  L  L  L  L  F  Q  V  S  S  E  T  S  P  S  L  L  P  L  L  P  S  S  T  P  L  * :   E  K  K  W  Q  K  N  P  T  I  K  P  L  L  H  S  R  N  S  S   : A  R  K  Q  N  L  D  Q  L  L  Q  Q  E  L  T  R  S  L  L  N  *  N  Q  Q  T  A  A  R  H  S  T  L  L  S  T  *  K  L  A  L  F  I  S  R  L  R  N  M   : T  Q  T  Q  P  Y  M  V  S  *  Q  R  A  R  A  L  S :   S  W  F  S  R  A  L  T  H  E  S  A  H  P  M  S  S  T  S  N  L  V  R  H  S  W  F  V  T  S  P  T  W  S  L  L  M  T  R :   S  G  T  L  E  *  E  Q  P  L  N  T  P  F  F  I  L  R  W  R  T  S  L  S  L  A  T  V  L  V  E  V  S  K  V  S  C  H  Y  L  K  M  V  V  N  Q   : L  P  L  L  R  I  G  *  K  F  V  Y  L  P  R  Q  R  F  W  P  I  T  E  G  K  N  L  H  I  N  A  Q  L  V  R  R :   K  L  *  T  F  H  L  E  I  C  L  R  I  H  S  *  E  K  D  W  *  R  K  H  W  H  *  R  E  V  T  M  I  S  *  R  V  D  L  S  C  G  D  L  S  S  V  F  L  L  L  F  P  Y  E  L  N  S  I  T  I  W  P  S  Q  F  P  S  F  F  F  F  S  P  D  S  T  F  A  S  Q  N  Q  L  C  V  C  C  L  Y  V  L  C  M  Y  E  S  N  M  E  E  H  S  L  L  Y  F  *  N  K  *  N  G  D  Y  F  L  Y  K  Y  V  C  G  G  L  W  *  V  K  D  V  A  S  I  L  H  W  K  L  M  *  R  Q  R  D  R  Q  A  T  R  G  F  P  D  L  I  C  Y  S  C  S  C  R  P  K  I  G  H  N  N  L  Q  T  L  F  S  A  T </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02HBa0236E02.1" strand="+"/>
                <serials PGL_serial="4" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="14997" stop="15182"/>
                    <exon start="16380" stop="16441"/>
                    <exon start="16814" stop="16957"/>
                    <exon start="17056" stop="17104"/>
                    <exon start="17189" stop="17305"/>
                    <exon start="17391" stop="17530"/>
                    <exon start="17608" stop="17713"/>
                    <exon start="17794" stop="17958"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>966</number_coding_nucleotides>
                  <number_encoded_amino_acids>322</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>EMSTASINNCLTLSPAQASLKKPTRPVAFARLGNSSSSSSIPSLIRNEPVFAAPTPIINPIVREEMAKESYDQAIAALEKLLSEKAELGPVAAARVDQITAELKSADGGKAFDPVEHMKAGFIHFKTEKYDTNPALYGELAKGQSPKFMVFACSDSRVCPSHVLNFQPGEAFMVRNIANMVPAYDKVRYSGVGAAIEYAVLHLKVENIVVIGHSACGGIKGLMSLPEDGSESTAFIEDWVKICLPAKAKVLADHGGKEFAHQCTACEKEAVNVSLGNLLTYPFVREGLVKKTLALKGGYYDFVKGGFELWGLEFGLSPPLSV*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C02HBa0236E02.1" strand="+"/>
                <serials PGL_serial="4" AGS_serial="1" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="17928" stop="18179"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>249</number_coding_nucleotides>
                  <number_encoded_amino_acids>83</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>VRSFSSSFRMNLIQLPFGPHNFLPFFFFRLTVLLLRKINCVYVVCMYYVCMNQIWKSTRCYISEINKMETTFCINTFVVGFGR*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="2">
          <exon_coordinates>
            <exon e_start="14732" e_stop="15182"/>
            <exon e_start="16380" e_stop="16441"/>
            <exon e_start="16814" e_stop="16957"/>
            <exon e_start="17056" e_stop="17104"/>
            <exon e_start="17189" e_stop="17305"/>
            <exon e_start="17391" e_stop="17530"/>
            <exon e_start="17608" e_stop="17713"/>
            <exon e_start="17794" e_stop="18154"/>
            <exon e_start="18523" e_stop="18560"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="1.000" acc_prob="0.971" e_score="1.000"/>
          <exon-intron don_prob="0.999" acc_prob="1.000" e_score="1.000"/>
          <exon-intron don_prob="0.999" acc_prob="0.999" e_score="1.000"/>
          <exon-intron don_prob="1.000" acc_prob="0.961" e_score="1.000"/>
          <exon-intron don_prob="0.999" acc_prob="0.979" e_score="1.000"/>
          <exon-intron don_prob="0.999" acc_prob="0.948" e_score="1.000"/>
          <exon-intron don_prob="1.000" acc_prob="0.997" e_score="1.000"/>
          <exon-intron don_prob="0.000" acc_prob="0.000" e_score="0.994"/>
          <exon-only e_score="0.917"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="14732" e_stop="15182" e_length="451"/>
          </exon>
          <intron i_serial="1" don_prob="1.000" acc_prob="0.971">
            <gDNA_intron_boundary i_start="15183" i_stop="16379" i_length="1197"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="16380" e_stop="16441" e_length="62"/>
          </exon>
          <intron i_serial="2" don_prob="0.999" acc_prob="1.000">
            <gDNA_intron_boundary i_start="16442" i_stop="16813" i_length="372"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="16814" e_stop="16957" e_length="144"/>
          </exon>
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              <exon start="17608" stop="17703"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E289687" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="17194" stop="17305"/>
              <exon start="17391" stop="17530"/>
              <exon start="17608" stop="17713"/>
              <exon start="17794" stop="17831"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E289789" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="17199" stop="17305"/>
              <exon start="17391" stop="17530"/>
              <exon start="17608" stop="17713"/>
              <exon start="17794" stop="17873"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E278109" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="17215" stop="17305"/>
              <exon start="17391" stop="17528"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E290692" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="17218" stop="17305"/>
              <exon start="17391" stop="17530"/>
              <exon start="17608" stop="17713"/>
              <exon start="17794" stop="18144"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E402991" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="17239" stop="17305"/>
              <exon start="17391" stop="17530"/>
              <exon start="17608" stop="17713"/>
              <exon start="17794" stop="17987"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E296253" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="17240" stop="17305"/>
              <exon start="17391" stop="17530"/>
              <exon start="17608" stop="17713"/>
              <exon start="17794" stop="17924"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E278631" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="17265" stop="17305"/>
              <exon start="17391" stop="17530"/>
              <exon start="17608" stop="17713"/>
              <exon start="17794" stop="18142"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E342393" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="17266" stop="17305"/>
              <exon start="17391" stop="17530"/>
              <exon start="17608" stop="17713"/>
              <exon start="17794" stop="18016"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E298412" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="17397" stop="17530"/>
              <exon start="17608" stop="17713"/>
              <exon start="17794" stop="17932"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E291385" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="17401" stop="17530"/>
              <exon start="17608" stop="17713"/>
              <exon start="17794" stop="18087"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E285134" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="17441" stop="17530"/>
              <exon start="17608" stop="17713"/>
              <exon start="17794" stop="18105"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E295890" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="17473" stop="17530"/>
              <exon start="17608" stop="17713"/>
              <exon start="17794" stop="18035"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E293777" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="17475" stop="17530"/>
              <exon start="17608" stop="17713"/>
              <exon start="17794" stop="18129"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E297794" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="17519" stop="17530"/>
              <exon start="17608" stop="17713"/>
              <exon start="17794" stop="18119"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E294938" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="17611" stop="17713"/>
              <exon start="17794" stop="18145"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E545781" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="17615" stop="17713"/>
              <exon start="17794" stop="18081"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E390842" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="17623" stop="17713"/>
              <exon start="17794" stop="18133"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E278439" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="17631" stop="17713"/>
              <exon start="17794" stop="18154"/>
              <exon start="18523" stop="18534"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E224758" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="17675" stop="17713"/>
              <exon start="17794" stop="18134"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E237382" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="17676" stop="17713"/>
              <exon start="17794" stop="18049"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E378485" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="17678" stop="17713"/>
              <exon start="17794" stop="18134"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E237283" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="17681" stop="17713"/>
              <exon start="17794" stop="18145"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E290956" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="17683" stop="17713"/>
              <exon start="17794" stop="18154"/>
              <exon start="18523" stop="18560"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E365325" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="17704" stop="17713"/>
              <exon start="17794" stop="18130"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E288144" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="17797" stop="18134"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E234581" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="17876" stop="18154"/>
              <exon start="18523" stop="18534"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E224538" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="4" AGS_serial="2" gDNA_strand="+"/>
          <translation>
            <gDNA_template>TTGAAATGTAAGGTTCTTGGCTTCTTAGCCATATGATATTAAGGCAAAAGTAAGATACAACATTGAATCTCCAACGTACAAACCTCATCTACAATGGATTGAAGCTCTCATTTGCTTAGCCATCACTTTCAACATTGTCTATTGGATTGGTTATATGTAAGAGTTCAAAAGCAGCAATAATCAAGAACACATCACTAGCTATACTATTACTAGTTAGTAACAAAGTAGTATAAAGGGCAAGCAAAAGCTAAAGGAAGCTCATTGAGAAATGTCAACTGCTTCCATTAACAATTGCCTTACTCTCTCCCCTGCTCAAGCTTCCCTTAAGAAACCTACTCGTCCCGTTGCCTTCGCAAGGCTTGGCAACTCTTCTTCTTCTTCTTCTATTCCAAGTCTCATCAGAAACGAGCCCGTCTTTGCTGCCCCTACTCCCATCATCAACCCCATTGTG : AGAGAAGAAATGGCAAAAGAATCCTACGATCAAGCCATTGCTGCACTCGAGAAACTCCTCAG : CGAGAAAGCAGAACTTGGACCAGTTGCTGCAGCAAGAGTTGACCAGATCACTGCTGAATTGAAATCAGCAGACGGCGGCAAGGCATTCGACCCTGTTGAGCACATGAAAGCTGGCTTTATTCATTTCAAGACTGAGAAATATGA : CACAAACCCAGCCTTATATGGTGAGCTAGCAAAGGGCCAGAGCCCTAAG : TTCATGGTTTTCGCGTGCTCTGACTCACGAGTCTGCCCATCCCATGTCCTCAACTTCCAACCTGGTGAGGCATTCATGGTTCGTAACATCGCCAACATGGTCCCTGCTTATGACAAG : GTCAGGTACTCTGGAGTAGGAGCAGCCATTGAATACGCCGTTCTTCATCTTAAGGTGGAGAACATCGTTGTCATTGGCCACAGTGCTTGTGGAGGTATCAAAGGTCTCATGTCACTACCTGAAGATGGTAGTGAATCAAC : TGCCTTTATTGAGGATTGGGTAAAAATTTGTTTACCTGCCAAGGCAAAGGTTCTGGCCGATCACGGAGGGAAAGAATTTGCACATCAATGCACAGCTTGTGAGAAG : GAAGCTGTGAACGTTTCACTTGGAAATCTGCTTACGTATCCATTCGTGAGAGAAGGATTGGTGAAGAAAACATTGGCATTGAAGGGAGGTTACTATGATTTCGTGAAGGGTGGATTTGAGCTGTGGGGACTTGAGTTCGGTCTTTCTCCTCCTCTTTCCGTATGAACTTAATTCAATTACCATTTGGCCCTCACAATTTCCTTCCTTTTTTTTTTTTTCGCCTGACAGTACTTTTGCTTCGCAAAATCAACTGTGTGTATGTTGTTTGTATGTATTATGTATGTATGAATCAAATATGGAAGAGCACTCGTTGTTATATTTCTGAAATAAATAAAATGGAGACTACTTTTTGTATAAATAC : AAAAAAAAAAGAAGCAAATCACCATGGAATATTAAAGA</gDNA_template>
            <first_frame> L  K  C  K  V  L  G  F  L  A  I  *  Y  *  G  K  S  K  I  Q  H  *  I  S  N  V  Q  T  S  S  T  M  D  *  S  S  H  L  L  S  H  H  F  Q  H  C  L  L  D  W  L  Y  V  R  V  Q  K  Q  Q  *  S  R  T  H  H  *  L  Y  Y  Y  *  L  V  T  K  *  Y  K  G  Q  A  K  A  K  G  S  S  L  R  N  V  N  C  F  H  *  Q  L  P  Y  S  L  P  C  S  S  F  P  *  E  T  Y  S  S  R  C  L  R  K  A  W  Q  L  F  F  F  F  F  Y  S  K  S  H  Q  K  R  A  R  L  C  C  P  Y  S  H  H  Q  P  H  C   : E  R  R  N  G  K  R  I  L  R  S  S  H  C  C  T  R  E  T  P  Q  :  R  E  S  R  T  W  T  S  C  C  S  K  S  *  P  D  H  C  *  I  E  I  S  R  R  R  Q  G  I  R  P  C  *  A  H  E  S  W  L  Y  S  F  Q  D  *  E  I  *  :  H  K  P  S  L  I  W  *  A  S  K  G  P  E  P  *   : V  H  G  F  R  V  L  *  L  T  S  L  P  I  P  C  P  Q  L  P  T  W  *  G  I  H  G  S  *  H  R  Q  H  G  P  C  L  *  Q   : G  Q  V  L  W  S  R  S  S  H  *  I  R  R  S  S  S  *  G  G  E  H  R  C  H  W  P  Q  C  L  W  R  Y  Q  R  S  H  V  T  T  *  R  W  *  *  I  N  :  C  L  Y  *  G  L  G  K  N  L  F  T  C  Q  G  K  G  S  G  R  S  R  R  E  R  I  C  T  S  M  H  S  L  *  E   : G  S  C  E  R  F  T  W  K  S  A  Y  V  S  I  R  E  R  R  I  G  E  E  N  I  G  I  E  G  R  L  L  *  F  R  E  G  W  I  *  A  V  G  T  *  V  R  S  F  S  S  S  F  R  M  N  L  I  Q  L  P  F  G  P  H  N  F  L  P  F  F  F  F  R  L  T  V  L  L  L  R  K  I  N  C  V  Y  V  V  C  M  Y  Y  V  C  M  N  Q  I  W  K  S  T  R  C  Y  I  S  E  I  N  K  M  E  T  T  F  C  I  N  T :   K  K  K  E  A  N  H  H  G  I  L  K  </first_frame>
            <second_frame>  *  N  V  R  F  L  A  S  *  P  Y  D  I  K  A  K  V  R  Y  N  I  E  S  P  T  Y  K  P  H  L  Q  W  I  E  A  L  I  C  L  A  I  T  F  N  I  V  Y  W  I  G  Y  M  *  E  F  K  S  S  N  N  Q  E  H  I  T  S  Y  T  I  T  S  *  *  Q  S  S  I  K  G  K  Q  K  L  K  E  A  H  *  E  M  S  T  A  S  I  N  N  C  L  T  L  S  P  A  Q  A  S  L  K  K  P  T  R  P  V  A  F  A  R  L  G  N  S  S  S  S  S  S  I  P  S  L  I  R  N  E  P  V  F  A  A  P  T  P  I  I  N  P  I  V  :  R  E  E  M  A  K  E  S  Y  D  Q  A  I  A  A  L  E  K  L  L  S :   E  K  A  E  L  G  P  V  A  A  A  R  V  D  Q  I  T  A  E  L  K  S  A  D  G  G  K  A  F  D  P  V  E  H  M  K  A  G  F  I  H  F  K  T  E  K  Y  D :   T  N  P  A  L  Y  G  E  L  A  K  G  Q  S  P  K  :  F  M  V  F  A  C  S  D  S  R  V  C  P  S  H  V  L  N  F  Q  P  G  E  A  F  M  V  R  N  I  A  N  M  V  P  A  Y  D  K  :  V  R  Y  S  G  V  G  A  A  I  E  Y  A  V  L  H  L  K  V  E  N  I  V  V  I  G  H  S  A  C  G  G  I  K  G  L  M  S  L  P  E  D  G  S  E  S  T :   A  F  I  E  D  W  V  K  I  C  L  P  A  K  A  K  V  L  A  D  H  G  G  K  E  F  A  H  Q  C  T  A  C  E  K  :  E  A  V  N  V  S  L  G  N  L  L  T  Y  P  F  V  R  E  G  L  V  K  K  T  L  A  L  K  G  G  Y  Y  D  F  V  K  G  G  F  E  L  W  G  L  E  F  G  L  S  P  P  L  S  V  *  T  *  F  N  Y  H  L  A  L  T  I  S  F  L  F  F  F  F  A  *  Q  Y  F  C  F  A  K  S  T  V  C  M  L  F  V  C  I  M  Y  V  *  I  K  Y  G  R  A  L  V  V  I  F  L  K  *  I  K  W  R  L  L  F  V  *  I   : Q  K  K  K  K  Q  I  T  M  E  Y  *  R </second_frame>
            <third_frame>   E  M  *  G  S  W  L  L  S  H  M  I  L  R  Q  K  *  D  T  T  L  N  L  Q  R  T  N  L  I  Y  N  G  L  K  L  S  F  A  *  P  S  L  S  T  L  S  I  G  L  V  I  C  K  S  S  K  A  A  I  I  K  N  T  S  L  A  I  L  L  L  V  S  N  K  V  V  *  R  A  S  K  S  *  R  K  L  I  E  K  C  Q  L  L  P  L  T  I  A  L  L  S  P  L  L  K  L  P  L  R  N  L  L  V  P  L  P  S  Q  G  L  A  T  L  L  L  L  L  L  F  Q  V  S  S  E  T  S  P  S  L  L  P  L  L  P  S  S  T  P  L  * :   E  K  K  W  Q  K  N  P  T  I  K  P  L  L  H  S  R  N  S  S   : A  R  K  Q  N  L  D  Q  L  L  Q  Q  E  L  T  R  S  L  L  N  *  N  Q  Q  T  A  A  R  H  S  T  L  L  S  T  *  K  L  A  L  F  I  S  R  L  R  N  M   : T  Q  T  Q  P  Y  M  V  S  *  Q  R  A  R  A  L  S :   S  W  F  S  R  A  L  T  H  E  S  A  H  P  M  S  S  T  S  N  L  V  R  H  S  W  F  V  T  S  P  T  W  S  L  L  M  T  R :   S  G  T  L  E  *  E  Q  P  L  N  T  P  F  F  I  L  R  W  R  T  S  L  S  L  A  T  V  L  V  E  V  S  K  V  S  C  H  Y  L  K  M  V  V  N  Q   : L  P  L  L  R  I  G  *  K  F  V  Y  L  P  R  Q  R  F  W  P  I  T  E  G  K  N  L  H  I  N  A  Q  L  V  R  R :   K  L  *  T  F  H  L  E  I  C  L  R  I  H  S  *  E  K  D  W  *  R  K  H  W  H  *  R  E  V  T  M  I  S  *  R  V  D  L  S  C  G  D  L  S  S  V  F  L  L  L  F  P  Y  E  L  N  S  I  T  I  W  P  S  Q  F  P  S  F  F  F  F  S  P  D  S  T  F  A  S  Q  N  Q  L  C  V  C  C  L  Y  V  L  C  M  Y  E  S  N  M  E  E  H  S  L  L  Y  F  *  N  K  *  N  G  D  Y  F  L  Y  K  Y  :  K  K  K  R  S  K  S  P  W  N  I  K   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02HBa0236E02.1" strand="+"/>
                <serials PGL_serial="4" AGS_serial="2" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="14997" stop="15182"/>
                    <exon start="16380" stop="16441"/>
                    <exon start="16814" stop="16957"/>
                    <exon start="17056" stop="17104"/>
                    <exon start="17189" stop="17305"/>
                    <exon start="17391" stop="17530"/>
                    <exon start="17608" stop="17713"/>
                    <exon start="17794" stop="17958"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>966</number_coding_nucleotides>
                  <number_encoded_amino_acids>322</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>EMSTASINNCLTLSPAQASLKKPTRPVAFARLGNSSSSSSIPSLIRNEPVFAAPTPIINPIVREEMAKESYDQAIAALEKLLSEKAELGPVAAARVDQITAELKSADGGKAFDPVEHMKAGFIHFKTEKYDTNPALYGELAKGQSPKFMVFACSDSRVCPSHVLNFQPGEAFMVRNIANMVPAYDKVRYSGVGAAIEYAVLHLKVENIVVIGHSACGGIKGLMSLPEDGSESTAFIEDWVKICLPAKAKVLADHGGKEFAHQCTACEKEAVNVSLGNLLTYPFVREGLVKKTLALKGGYYDFVKGGFELWGLEFGLSPPLSV*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C02HBa0236E02.1" strand="+"/>
                <serials PGL_serial="4" AGS_serial="2" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="17928" stop="18154"/>
                    <exon start="18523" stop="18559"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>264</number_coding_nucleotides>
                  <number_encoded_amino_acids>88</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>VRSFSSSFRMNLIQLPFGPHNFLPFFFFRLTVLLLRKINCVYVVCMYYVCMNQIWKSTRCYISEINKMETTFCINTKKKEANHHGILK</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="3">
          <exon_coordinates>
            <exon e_start="14732" e_stop="15182"/>
            <exon e_start="16380" e_stop="16441"/>
            <exon e_start="16814" e_stop="16957"/>
            <exon e_start="17056" e_stop="17104"/>
            <exon e_start="17189" e_stop="17305"/>
            <exon e_start="17391" e_stop="17530"/>
            <exon e_start="17608" e_stop="17713"/>
            <exon e_start="17794" e_stop="18150"/>
            <exon e_start="18515" e_stop="18554"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="1.000" acc_prob="0.971" e_score="1.000"/>
          <exon-intron don_prob="0.999" acc_prob="1.000" e_score="1.000"/>
          <exon-intron don_prob="0.999" acc_prob="0.999" e_score="1.000"/>
          <exon-intron don_prob="1.000" acc_prob="0.961" e_score="1.000"/>
          <exon-intron don_prob="0.999" acc_prob="0.979" e_score="1.000"/>
          <exon-intron don_prob="0.999" acc_prob="0.948" e_score="1.000"/>
          <exon-intron don_prob="1.000" acc_prob="0.997" e_score="1.000"/>
          <exon-intron don_prob="0.000" acc_prob="0.000" e_score="0.994"/>
          <exon-only e_score="0.575"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="14732" e_stop="15182" e_length="451"/>
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            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E295882" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="16949" stop="16957"/>
              <exon start="17056" stop="17104"/>
              <exon start="17189" stop="17305"/>
              <exon start="17391" stop="17530"/>
              <exon start="17608" stop="17713"/>
              <exon start="17794" stop="18150"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E694906" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="17059" stop="17104"/>
              <exon start="17189" stop="17305"/>
              <exon start="17391" stop="17530"/>
              <exon start="17608" stop="17703"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E289687" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="17194" stop="17305"/>
              <exon start="17391" stop="17530"/>
              <exon start="17608" stop="17713"/>
              <exon start="17794" stop="17831"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E289789" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="17199" stop="17305"/>
              <exon start="17391" stop="17530"/>
              <exon start="17608" stop="17713"/>
              <exon start="17794" stop="17873"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E278109" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="17215" stop="17305"/>
              <exon start="17391" stop="17528"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E290692" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="17218" stop="17305"/>
              <exon start="17391" stop="17530"/>
              <exon start="17608" stop="17713"/>
              <exon start="17794" stop="18144"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E402991" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="17239" stop="17305"/>
              <exon start="17391" stop="17530"/>
              <exon start="17608" stop="17713"/>
              <exon start="17794" stop="17987"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E296253" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="17240" stop="17305"/>
              <exon start="17391" stop="17530"/>
              <exon start="17608" stop="17713"/>
              <exon start="17794" stop="17924"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E278631" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="17265" stop="17305"/>
              <exon start="17391" stop="17530"/>
              <exon start="17608" stop="17713"/>
              <exon start="17794" stop="18142"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E342393" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="17266" stop="17305"/>
              <exon start="17391" stop="17530"/>
              <exon start="17608" stop="17713"/>
              <exon start="17794" stop="18016"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E298412" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="17270" stop="17305"/>
              <exon start="17391" stop="17530"/>
              <exon start="17608" stop="17713"/>
              <exon start="17794" stop="18150"/>
              <exon start="18515" stop="18554"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E733939" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="17397" stop="17530"/>
              <exon start="17608" stop="17713"/>
              <exon start="17794" stop="17932"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E291385" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="17401" stop="17530"/>
              <exon start="17608" stop="17713"/>
              <exon start="17794" stop="18087"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E285134" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="17441" stop="17530"/>
              <exon start="17608" stop="17713"/>
              <exon start="17794" stop="18105"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E295890" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="17473" stop="17530"/>
              <exon start="17608" stop="17713"/>
              <exon start="17794" stop="18035"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E293777" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="17475" stop="17530"/>
              <exon start="17608" stop="17713"/>
              <exon start="17794" stop="18129"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E297794" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="17519" stop="17530"/>
              <exon start="17608" stop="17713"/>
              <exon start="17794" stop="18119"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E294938" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="17611" stop="17713"/>
              <exon start="17794" stop="18145"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E545781" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="17615" stop="17713"/>
              <exon start="17794" stop="18081"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E390842" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="17623" stop="17713"/>
              <exon start="17794" stop="18133"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E278439" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="17675" stop="17713"/>
              <exon start="17794" stop="18134"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E237382" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="17676" stop="17713"/>
              <exon start="17794" stop="18049"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E378485" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="17678" stop="17713"/>
              <exon start="17794" stop="18134"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E237283" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="17681" stop="17713"/>
              <exon start="17794" stop="18145"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E290956" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="17704" stop="17713"/>
              <exon start="17794" stop="18130"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E288144" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="17797" stop="18134"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E234581" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="4" AGS_serial="3" gDNA_strand="+"/>
          <translation>
            <gDNA_template>TTGAAATGTAAGGTTCTTGGCTTCTTAGCCATATGATATTAAGGCAAAAGTAAGATACAACATTGAATCTCCAACGTACAAACCTCATCTACAATGGATTGAAGCTCTCATTTGCTTAGCCATCACTTTCAACATTGTCTATTGGATTGGTTATATGTAAGAGTTCAAAAGCAGCAATAATCAAGAACACATCACTAGCTATACTATTACTAGTTAGTAACAAAGTAGTATAAAGGGCAAGCAAAAGCTAAAGGAAGCTCATTGAGAAATGTCAACTGCTTCCATTAACAATTGCCTTACTCTCTCCCCTGCTCAAGCTTCCCTTAAGAAACCTACTCGTCCCGTTGCCTTCGCAAGGCTTGGCAACTCTTCTTCTTCTTCTTCTATTCCAAGTCTCATCAGAAACGAGCCCGTCTTTGCTGCCCCTACTCCCATCATCAACCCCATTGTG : AGAGAAGAAATGGCAAAAGAATCCTACGATCAAGCCATTGCTGCACTCGAGAAACTCCTCAG : CGAGAAAGCAGAACTTGGACCAGTTGCTGCAGCAAGAGTTGACCAGATCACTGCTGAATTGAAATCAGCAGACGGCGGCAAGGCATTCGACCCTGTTGAGCACATGAAAGCTGGCTTTATTCATTTCAAGACTGAGAAATATGA : CACAAACCCAGCCTTATATGGTGAGCTAGCAAAGGGCCAGAGCCCTAAG : TTCATGGTTTTCGCGTGCTCTGACTCACGAGTCTGCCCATCCCATGTCCTCAACTTCCAACCTGGTGAGGCATTCATGGTTCGTAACATCGCCAACATGGTCCCTGCTTATGACAAG : GTCAGGTACTCTGGAGTAGGAGCAGCCATTGAATACGCCGTTCTTCATCTTAAGGTGGAGAACATCGTTGTCATTGGCCACAGTGCTTGTGGAGGTATCAAAGGTCTCATGTCACTACCTGAAGATGGTAGTGAATCAAC : TGCCTTTATTGAGGATTGGGTAAAAATTTGTTTACCTGCCAAGGCAAAGGTTCTGGCCGATCACGGAGGGAAAGAATTTGCACATCAATGCACAGCTTGTGAGAAG : GAAGCTGTGAACGTTTCACTTGGAAATCTGCTTACGTATCCATTCGTGAGAGAAGGATTGGTGAAGAAAACATTGGCATTGAAGGGAGGTTACTATGATTTCGTGAAGGGTGGATTTGAGCTGTGGGGACTTGAGTTCGGTCTTTCTCCTCCTCTTTCCGTATGAACTTAATTCAATTACCATTTGGCCCTCACAATTTCCTTCCTTTTTTTTTTTTTCGCCTGACAGTACTTTTGCTTCGCAAAATCAACTGTGTGTATGTTGTTTGTATGTATTATGTATGTATGAATCAAATATGGAAGAGCACTCGTTGTTATATTTCTGAAATAAATAAAATGGAGACTACTTTTTGTATAA : TATATAAGAAAAAAAAAAGAAGCAAATCACCATGGAATAT</gDNA_template>
            <first_frame> L  K  C  K  V  L  G  F  L  A  I  *  Y  *  G  K  S  K  I  Q  H  *  I  S  N  V  Q  T  S  S  T  M  D  *  S  S  H  L  L  S  H  H  F  Q  H  C  L  L  D  W  L  Y  V  R  V  Q  K  Q  Q  *  S  R  T  H  H  *  L  Y  Y  Y  *  L  V  T  K  *  Y  K  G  Q  A  K  A  K  G  S  S  L  R  N  V  N  C  F  H  *  Q  L  P  Y  S  L  P  C  S  S  F  P  *  E  T  Y  S  S  R  C  L  R  K  A  W  Q  L  F  F  F  F  F  Y  S  K  S  H  Q  K  R  A  R  L  C  C  P  Y  S  H  H  Q  P  H  C   : E  R  R  N  G  K  R  I  L  R  S  S  H  C  C  T  R  E  T  P  Q  :  R  E  S  R  T  W  T  S  C  C  S  K  S  *  P  D  H  C  *  I  E  I  S  R  R  R  Q  G  I  R  P  C  *  A  H  E  S  W  L  Y  S  F  Q  D  *  E  I  *  :  H  K  P  S  L  I  W  *  A  S  K  G  P  E  P  *   : V  H  G  F  R  V  L  *  L  T  S  L  P  I  P  C  P  Q  L  P  T  W  *  G  I  H  G  S  *  H  R  Q  H  G  P  C  L  *  Q   : G  Q  V  L  W  S  R  S  S  H  *  I  R  R  S  S  S  *  G  G  E  H  R  C  H  W  P  Q  C  L  W  R  Y  Q  R  S  H  V  T  T  *  R  W  *  *  I  N  :  C  L  Y  *  G  L  G  K  N  L  F  T  C  Q  G  K  G  S  G  R  S  R  R  E  R  I  C  T  S  M  H  S  L  *  E   : G  S  C  E  R  F  T  W  K  S  A  Y  V  S  I  R  E  R  R  I  G  E  E  N  I  G  I  E  G  R  L  L  *  F  R  E  G  W  I  *  A  V  G  T  *  V  R  S  F  S  S  S  F  R  M  N  L  I  Q  L  P  F  G  P  H  N  F  L  P  F  F  F  F  R  L  T  V  L  L  L  R  K  I  N  C  V  Y  V  V  C  M  Y  Y  V  C  M  N  Q  I  W  K  S  T  R  C  Y  I  S  E  I  N  K  M  E  T  T  F  C  I   : I  Y  K  K  K  K  R  S  K  S  P  W  N   </first_frame>
            <second_frame>  *  N  V  R  F  L  A  S  *  P  Y  D  I  K  A  K  V  R  Y  N  I  E  S  P  T  Y  K  P  H  L  Q  W  I  E  A  L  I  C  L  A  I  T  F  N  I  V  Y  W  I  G  Y  M  *  E  F  K  S  S  N  N  Q  E  H  I  T  S  Y  T  I  T  S  *  *  Q  S  S  I  K  G  K  Q  K  L  K  E  A  H  *  E  M  S  T  A  S  I  N  N  C  L  T  L  S  P  A  Q  A  S  L  K  K  P  T  R  P  V  A  F  A  R  L  G  N  S  S  S  S  S  S  I  P  S  L  I  R  N  E  P  V  F  A  A  P  T  P  I  I  N  P  I  V  :  R  E  E  M  A  K  E  S  Y  D  Q  A  I  A  A  L  E  K  L  L  S :   E  K  A  E  L  G  P  V  A  A  A  R  V  D  Q  I  T  A  E  L  K  S  A  D  G  G  K  A  F  D  P  V  E  H  M  K  A  G  F  I  H  F  K  T  E  K  Y  D :   T  N  P  A  L  Y  G  E  L  A  K  G  Q  S  P  K  :  F  M  V  F  A  C  S  D  S  R  V  C  P  S  H  V  L  N  F  Q  P  G  E  A  F  M  V  R  N  I  A  N  M  V  P  A  Y  D  K  :  V  R  Y  S  G  V  G  A  A  I  E  Y  A  V  L  H  L  K  V  E  N  I  V  V  I  G  H  S  A  C  G  G  I  K  G  L  M  S  L  P  E  D  G  S  E  S  T :   A  F  I  E  D  W  V  K  I  C  L  P  A  K  A  K  V  L  A  D  H  G  G  K  E  F  A  H  Q  C  T  A  C  E  K  :  E  A  V  N  V  S  L  G  N  L  L  T  Y  P  F  V  R  E  G  L  V  K  K  T  L  A  L  K  G  G  Y  Y  D  F  V  K  G  G  F  E  L  W  G  L  E  F  G  L  S  P  P  L  S  V  *  T  *  F  N  Y  H  L  A  L  T  I  S  F  L  F  F  F  F  A  *  Q  Y  F  C  F  A  K  S  T  V  C  M  L  F  V  C  I  M  Y  V  *  I  K  Y  G  R  A  L  V  V  I  F  L  K  *  I  K  W  R  L  L  F  V  *  :  Y  I  R  K  K  K  E  A  N  H  H  G  I  </second_frame>
            <third_frame>   E  M  *  G  S  W  L  L  S  H  M  I  L  R  Q  K  *  D  T  T  L  N  L  Q  R  T  N  L  I  Y  N  G  L  K  L  S  F  A  *  P  S  L  S  T  L  S  I  G  L  V  I  C  K  S  S  K  A  A  I  I  K  N  T  S  L  A  I  L  L  L  V  S  N  K  V  V  *  R  A  S  K  S  *  R  K  L  I  E  K  C  Q  L  L  P  L  T  I  A  L  L  S  P  L  L  K  L  P  L  R  N  L  L  V  P  L  P  S  Q  G  L  A  T  L  L  L  L  L  L  F  Q  V  S  S  E  T  S  P  S  L  L  P  L  L  P  S  S  T  P  L  * :   E  K  K  W  Q  K  N  P  T  I  K  P  L  L  H  S  R  N  S  S   : A  R  K  Q  N  L  D  Q  L  L  Q  Q  E  L  T  R  S  L  L  N  *  N  Q  Q  T  A  A  R  H  S  T  L  L  S  T  *  K  L  A  L  F  I  S  R  L  R  N  M   : T  Q  T  Q  P  Y  M  V  S  *  Q  R  A  R  A  L  S :   S  W  F  S  R  A  L  T  H  E  S  A  H  P  M  S  S  T  S  N  L  V  R  H  S  W  F  V  T  S  P  T  W  S  L  L  M  T  R :   S  G  T  L  E  *  E  Q  P  L  N  T  P  F  F  I  L  R  W  R  T  S  L  S  L  A  T  V  L  V  E  V  S  K  V  S  C  H  Y  L  K  M  V  V  N  Q   : L  P  L  L  R  I  G  *  K  F  V  Y  L  P  R  Q  R  F  W  P  I  T  E  G  K  N  L  H  I  N  A  Q  L  V  R  R :   K  L  *  T  F  H  L  E  I  C  L  R  I  H  S  *  E  K  D  W  *  R  K  H  W  H  *  R  E  V  T  M  I  S  *  R  V  D  L  S  C  G  D  L  S  S  V  F  L  L  L  F  P  Y  E  L  N  S  I  T  I  W  P  S  Q  F  P  S  F  F  F  F  S  P  D  S  T  F  A  S  Q  N  Q  L  C  V  C  C  L  Y  V  L  C  M  Y  E  S  N  M  E  E  H  S  L  L  Y  F  *  N  K  *  N  G  D  Y  F  L  Y  N :   I  *  E  K  K  K  K  Q  I  T  M  E  Y </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02HBa0236E02.1" strand="+"/>
                <serials PGL_serial="4" AGS_serial="3" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="14997" stop="15182"/>
                    <exon start="16380" stop="16441"/>
                    <exon start="16814" stop="16957"/>
                    <exon start="17056" stop="17104"/>
                    <exon start="17189" stop="17305"/>
                    <exon start="17391" stop="17530"/>
                    <exon start="17608" stop="17713"/>
                    <exon start="17794" stop="17958"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>966</number_coding_nucleotides>
                  <number_encoded_amino_acids>322</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>EMSTASINNCLTLSPAQASLKKPTRPVAFARLGNSSSSSSIPSLIRNEPVFAAPTPIINPIVREEMAKESYDQAIAALEKLLSEKAELGPVAAARVDQITAELKSADGGKAFDPVEHMKAGFIHFKTEKYDTNPALYGELAKGQSPKFMVFACSDSRVCPSHVLNFQPGEAFMVRNIANMVPAYDKVRYSGVGAAIEYAVLHLKVENIVVIGHSACGGIKGLMSLPEDGSESTAFIEDWVKICLPAKAKVLADHGGKEFAHQCTACEKEAVNVSLGNLLTYPFVREGLVKKTLALKGGYYDFVKGGFELWGLEFGLSPPLSV*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C02HBa0236E02.1" strand="+"/>
                <serials PGL_serial="4" AGS_serial="3" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="17928" stop="18150"/>
                    <exon start="18515" stop="18552"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>261</number_coding_nucleotides>
                  <number_encoded_amino_acids>87</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>VRSFSSSFRMNLIQLPFGPHNFLPFFFFRLTVLLLRKINCVYVVCMYYVCMNQIWKSTRCYISEINKMETTFCIIYKKKKRSKSPWN</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="4">
          <exon_coordinates>
            <exon e_start="14732" e_stop="15182"/>
            <exon e_start="16380" e_stop="16441"/>
            <exon e_start="16814" e_stop="16957"/>
            <exon e_start="17056" e_stop="17104"/>
            <exon e_start="17189" e_stop="17305"/>
            <exon e_start="17391" e_stop="17530"/>
            <exon e_start="17608" e_stop="17713"/>
            <exon e_start="17794" e_stop="18154"/>
            <exon e_start="18516" e_stop="18571"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="1.000" acc_prob="0.971" e_score="1.000"/>
          <exon-intron don_prob="0.999" acc_prob="1.000" e_score="1.000"/>
          <exon-intron don_prob="0.999" acc_prob="0.999" e_score="1.000"/>
          <exon-intron don_prob="1.000" acc_prob="0.961" e_score="1.000"/>
          <exon-intron don_prob="0.999" acc_prob="0.979" e_score="1.000"/>
          <exon-intron don_prob="0.999" acc_prob="0.948" e_score="1.000"/>
          <exon-intron don_prob="1.000" acc_prob="0.997" e_score="1.000"/>
          <exon-intron don_prob="0.000" acc_prob="0.000" e_score="0.994"/>
          <exon-only e_score="0.518"/>
        </SCR_line>
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              <exon start="17056" stop="17104"/>
              <exon start="17189" stop="17305"/>
              <exon start="17391" stop="17530"/>
              <exon start="17608" stop="17713"/>
              <exon start="17794" stop="18012"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E295882" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="16949" stop="16957"/>
              <exon start="17056" stop="17104"/>
              <exon start="17189" stop="17305"/>
              <exon start="17391" stop="17530"/>
              <exon start="17608" stop="17713"/>
              <exon start="17794" stop="18150"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E694906" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="17059" stop="17104"/>
              <exon start="17189" stop="17305"/>
              <exon start="17391" stop="17530"/>
              <exon start="17608" stop="17703"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E289687" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="17194" stop="17305"/>
              <exon start="17391" stop="17530"/>
              <exon start="17608" stop="17713"/>
              <exon start="17794" stop="17831"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E289789" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="17199" stop="17305"/>
              <exon start="17391" stop="17530"/>
              <exon start="17608" stop="17713"/>
              <exon start="17794" stop="17873"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E278109" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="17215" stop="17305"/>
              <exon start="17391" stop="17528"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E290692" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="17218" stop="17305"/>
              <exon start="17391" stop="17530"/>
              <exon start="17608" stop="17713"/>
              <exon start="17794" stop="18144"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E402991" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="17239" stop="17305"/>
              <exon start="17391" stop="17530"/>
              <exon start="17608" stop="17713"/>
              <exon start="17794" stop="17987"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E296253" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="17240" stop="17305"/>
              <exon start="17391" stop="17530"/>
              <exon start="17608" stop="17713"/>
              <exon start="17794" stop="17924"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E278631" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="17265" stop="17305"/>
              <exon start="17391" stop="17530"/>
              <exon start="17608" stop="17713"/>
              <exon start="17794" stop="18142"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E342393" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="17266" stop="17305"/>
              <exon start="17391" stop="17530"/>
              <exon start="17608" stop="17713"/>
              <exon start="17794" stop="18016"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E298412" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="17270" stop="17305"/>
              <exon start="17391" stop="17530"/>
              <exon start="17608" stop="17713"/>
              <exon start="17794" stop="18154"/>
              <exon start="18516" stop="18571"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E733936" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="17397" stop="17530"/>
              <exon start="17608" stop="17713"/>
              <exon start="17794" stop="17932"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E291385" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="17401" stop="17530"/>
              <exon start="17608" stop="17713"/>
              <exon start="17794" stop="18087"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E285134" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="17441" stop="17530"/>
              <exon start="17608" stop="17713"/>
              <exon start="17794" stop="18105"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E295890" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="17473" stop="17530"/>
              <exon start="17608" stop="17713"/>
              <exon start="17794" stop="18035"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E293777" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="17475" stop="17530"/>
              <exon start="17608" stop="17713"/>
              <exon start="17794" stop="18129"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E297794" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="17519" stop="17530"/>
              <exon start="17608" stop="17713"/>
              <exon start="17794" stop="18119"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E294938" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="17611" stop="17713"/>
              <exon start="17794" stop="18145"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E545781" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="17615" stop="17713"/>
              <exon start="17794" stop="18081"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E390842" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="17623" stop="17713"/>
              <exon start="17794" stop="18133"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E278439" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="17675" stop="17713"/>
              <exon start="17794" stop="18134"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E237382" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="17676" stop="17713"/>
              <exon start="17794" stop="18049"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E378485" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="17678" stop="17713"/>
              <exon start="17794" stop="18134"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E237283" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="17681" stop="17713"/>
              <exon start="17794" stop="18145"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E290956" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="17704" stop="17713"/>
              <exon start="17794" stop="18130"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E288144" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="17797" stop="18134"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E234581" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="4" AGS_serial="4" gDNA_strand="+"/>
          <translation>
            <gDNA_template>TTGAAATGTAAGGTTCTTGGCTTCTTAGCCATATGATATTAAGGCAAAAGTAAGATACAACATTGAATCTCCAACGTACAAACCTCATCTACAATGGATTGAAGCTCTCATTTGCTTAGCCATCACTTTCAACATTGTCTATTGGATTGGTTATATGTAAGAGTTCAAAAGCAGCAATAATCAAGAACACATCACTAGCTATACTATTACTAGTTAGTAACAAAGTAGTATAAAGGGCAAGCAAAAGCTAAAGGAAGCTCATTGAGAAATGTCAACTGCTTCCATTAACAATTGCCTTACTCTCTCCCCTGCTCAAGCTTCCCTTAAGAAACCTACTCGTCCCGTTGCCTTCGCAAGGCTTGGCAACTCTTCTTCTTCTTCTTCTATTCCAAGTCTCATCAGAAACGAGCCCGTCTTTGCTGCCCCTACTCCCATCATCAACCCCATTGTG : AGAGAAGAAATGGCAAAAGAATCCTACGATCAAGCCATTGCTGCACTCGAGAAACTCCTCAG : CGAGAAAGCAGAACTTGGACCAGTTGCTGCAGCAAGAGTTGACCAGATCACTGCTGAATTGAAATCAGCAGACGGCGGCAAGGCATTCGACCCTGTTGAGCACATGAAAGCTGGCTTTATTCATTTCAAGACTGAGAAATATGA : CACAAACCCAGCCTTATATGGTGAGCTAGCAAAGGGCCAGAGCCCTAAG : TTCATGGTTTTCGCGTGCTCTGACTCACGAGTCTGCCCATCCCATGTCCTCAACTTCCAACCTGGTGAGGCATTCATGGTTCGTAACATCGCCAACATGGTCCCTGCTTATGACAAG : GTCAGGTACTCTGGAGTAGGAGCAGCCATTGAATACGCCGTTCTTCATCTTAAGGTGGAGAACATCGTTGTCATTGGCCACAGTGCTTGTGGAGGTATCAAAGGTCTCATGTCACTACCTGAAGATGGTAGTGAATCAAC : TGCCTTTATTGAGGATTGGGTAAAAATTTGTTTACCTGCCAAGGCAAAGGTTCTGGCCGATCACGGAGGGAAAGAATTTGCACATCAATGCACAGCTTGTGAGAAG : GAAGCTGTGAACGTTTCACTTGGAAATCTGCTTACGTATCCATTCGTGAGAGAAGGATTGGTGAAGAAAACATTGGCATTGAAGGGAGGTTACTATGATTTCGTGAAGGGTGGATTTGAGCTGTGGGGACTTGAGTTCGGTCTTTCTCCTCCTCTTTCCGTATGAACTTAATTCAATTACCATTTGGCCCTCACAATTTCCTTCCTTTTTTTTTTTTTCGCCTGACAGTACTTTTGCTTCGCAAAATCAACTGTGTGTATGTTGTTTGTATGTATTATGTATGTATGAATCAAATATGGAAGAGCACTCGTTGTTATATTTCTGAAATAAATAAAATGGAGACTACTTTTTGTATAAATAC : ATATAAGAAAAAAAAAAGAAGCAAATCACCATGGAATATTAAAGACAGTTCTCATA</gDNA_template>
            <first_frame> L  K  C  K  V  L  G  F  L  A  I  *  Y  *  G  K  S  K  I  Q  H  *  I  S  N  V  Q  T  S  S  T  M  D  *  S  S  H  L  L  S  H  H  F  Q  H  C  L  L  D  W  L  Y  V  R  V  Q  K  Q  Q  *  S  R  T  H  H  *  L  Y  Y  Y  *  L  V  T  K  *  Y  K  G  Q  A  K  A  K  G  S  S  L  R  N  V  N  C  F  H  *  Q  L  P  Y  S  L  P  C  S  S  F  P  *  E  T  Y  S  S  R  C  L  R  K  A  W  Q  L  F  F  F  F  F  Y  S  K  S  H  Q  K  R  A  R  L  C  C  P  Y  S  H  H  Q  P  H  C   : E  R  R  N  G  K  R  I  L  R  S  S  H  C  C  T  R  E  T  P  Q  :  R  E  S  R  T  W  T  S  C  C  S  K  S  *  P  D  H  C  *  I  E  I  S  R  R  R  Q  G  I  R  P  C  *  A  H  E  S  W  L  Y  S  F  Q  D  *  E  I  *  :  H  K  P  S  L  I  W  *  A  S  K  G  P  E  P  *   : V  H  G  F  R  V  L  *  L  T  S  L  P  I  P  C  P  Q  L  P  T  W  *  G  I  H  G  S  *  H  R  Q  H  G  P  C  L  *  Q   : G  Q  V  L  W  S  R  S  S  H  *  I  R  R  S  S  S  *  G  G  E  H  R  C  H  W  P  Q  C  L  W  R  Y  Q  R  S  H  V  T  T  *  R  W  *  *  I  N  :  C  L  Y  *  G  L  G  K  N  L  F  T  C  Q  G  K  G  S  G  R  S  R  R  E  R  I  C  T  S  M  H  S  L  *  E   : G  S  C  E  R  F  T  W  K  S  A  Y  V  S  I  R  E  R  R  I  G  E  E  N  I  G  I  E  G  R  L  L  *  F  R  E  G  W  I  *  A  V  G  T  *  V  R  S  F  S  S  S  F  R  M  N  L  I  Q  L  P  F  G  P  H  N  F  L  P  F  F  F  F  R  L  T  V  L  L  L  R  K  I  N  C  V  Y  V  V  C  M  Y  Y  V  C  M  N  Q  I  W  K  S  T  R  C  Y  I  S  E  I  N  K  M  E  T  T  F  C  I  N  T :   Y  K  K  K  K  R  S  K  S  P  W  N  I  K  D  S  S  H  </first_frame>
            <second_frame>  *  N  V  R  F  L  A  S  *  P  Y  D  I  K  A  K  V  R  Y  N  I  E  S  P  T  Y  K  P  H  L  Q  W  I  E  A  L  I  C  L  A  I  T  F  N  I  V  Y  W  I  G  Y  M  *  E  F  K  S  S  N  N  Q  E  H  I  T  S  Y  T  I  T  S  *  *  Q  S  S  I  K  G  K  Q  K  L  K  E  A  H  *  E  M  S  T  A  S  I  N  N  C  L  T  L  S  P  A  Q  A  S  L  K  K  P  T  R  P  V  A  F  A  R  L  G  N  S  S  S  S  S  S  I  P  S  L  I  R  N  E  P  V  F  A  A  P  T  P  I  I  N  P  I  V  :  R  E  E  M  A  K  E  S  Y  D  Q  A  I  A  A  L  E  K  L  L  S :   E  K  A  E  L  G  P  V  A  A  A  R  V  D  Q  I  T  A  E  L  K  S  A  D  G  G  K  A  F  D  P  V  E  H  M  K  A  G  F  I  H  F  K  T  E  K  Y  D :   T  N  P  A  L  Y  G  E  L  A  K  G  Q  S  P  K  :  F  M  V  F  A  C  S  D  S  R  V  C  P  S  H  V  L  N  F  Q  P  G  E  A  F  M  V  R  N  I  A  N  M  V  P  A  Y  D  K  :  V  R  Y  S  G  V  G  A  A  I  E  Y  A  V  L  H  L  K  V  E  N  I  V  V  I  G  H  S  A  C  G  G  I  K  G  L  M  S  L  P  E  D  G  S  E  S  T :   A  F  I  E  D  W  V  K  I  C  L  P  A  K  A  K  V  L  A  D  H  G  G  K  E  F  A  H  Q  C  T  A  C  E  K  :  E  A  V  N  V  S  L  G  N  L  L  T  Y  P  F  V  R  E  G  L  V  K  K  T  L  A  L  K  G  G  Y  Y  D  F  V  K  G  G  F  E  L  W  G  L  E  F  G  L  S  P  P  L  S  V  *  T  *  F  N  Y  H  L  A  L  T  I  S  F  L  F  F  F  F  A  *  Q  Y  F  C  F  A  K  S  T  V  C  M  L  F  V  C  I  M  Y  V  *  I  K  Y  G  R  A  L  V  V  I  F  L  K  *  I  K  W  R  L  L  F  V  *  I   : H  I  R  K  K  K  E  A  N  H  H  G  I  L  K  T  V  L  I </second_frame>
            <third_frame>   E  M  *  G  S  W  L  L  S  H  M  I  L  R  Q  K  *  D  T  T  L  N  L  Q  R  T  N  L  I  Y  N  G  L  K  L  S  F  A  *  P  S  L  S  T  L  S  I  G  L  V  I  C  K  S  S  K  A  A  I  I  K  N  T  S  L  A  I  L  L  L  V  S  N  K  V  V  *  R  A  S  K  S  *  R  K  L  I  E  K  C  Q  L  L  P  L  T  I  A  L  L  S  P  L  L  K  L  P  L  R  N  L  L  V  P  L  P  S  Q  G  L  A  T  L  L  L  L  L  L  F  Q  V  S  S  E  T  S  P  S  L  L  P  L  L  P  S  S  T  P  L  * :   E  K  K  W  Q  K  N  P  T  I  K  P  L  L  H  S  R  N  S  S   : A  R  K  Q  N  L  D  Q  L  L  Q  Q  E  L  T  R  S  L  L  N  *  N  Q  Q  T  A  A  R  H  S  T  L  L  S  T  *  K  L  A  L  F  I  S  R  L  R  N  M   : T  Q  T  Q  P  Y  M  V  S  *  Q  R  A  R  A  L  S :   S  W  F  S  R  A  L  T  H  E  S  A  H  P  M  S  S  T  S  N  L  V  R  H  S  W  F  V  T  S  P  T  W  S  L  L  M  T  R :   S  G  T  L  E  *  E  Q  P  L  N  T  P  F  F  I  L  R  W  R  T  S  L  S  L  A  T  V  L  V  E  V  S  K  V  S  C  H  Y  L  K  M  V  V  N  Q   : L  P  L  L  R  I  G  *  K  F  V  Y  L  P  R  Q  R  F  W  P  I  T  E  G  K  N  L  H  I  N  A  Q  L  V  R  R :   K  L  *  T  F  H  L  E  I  C  L  R  I  H  S  *  E  K  D  W  *  R  K  H  W  H  *  R  E  V  T  M  I  S  *  R  V  D  L  S  C  G  D  L  S  S  V  F  L  L  L  F  P  Y  E  L  N  S  I  T  I  W  P  S  Q  F  P  S  F  F  F  F  S  P  D  S  T  F  A  S  Q  N  Q  L  C  V  C  C  L  Y  V  L  C  M  Y  E  S  N  M  E  E  H  S  L  L  Y  F  *  N  K  *  N  G  D  Y  F  L  Y  K  Y  :  I  *  E  K  K  K  K  Q  I  T  M  E  Y  *  R  Q  F  S   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02HBa0236E02.1" strand="+"/>
                <serials PGL_serial="4" AGS_serial="4" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="14997" stop="15182"/>
                    <exon start="16380" stop="16441"/>
                    <exon start="16814" stop="16957"/>
                    <exon start="17056" stop="17104"/>
                    <exon start="17189" stop="17305"/>
                    <exon start="17391" stop="17530"/>
                    <exon start="17608" stop="17713"/>
                    <exon start="17794" stop="17958"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>966</number_coding_nucleotides>
                  <number_encoded_amino_acids>322</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>EMSTASINNCLTLSPAQASLKKPTRPVAFARLGNSSSSSSIPSLIRNEPVFAAPTPIINPIVREEMAKESYDQAIAALEKLLSEKAELGPVAAARVDQITAELKSADGGKAFDPVEHMKAGFIHFKTEKYDTNPALYGELAKGQSPKFMVFACSDSRVCPSHVLNFQPGEAFMVRNIANMVPAYDKVRYSGVGAAIEYAVLHLKVENIVVIGHSACGGIKGLMSLPEDGSESTAFIEDWVKICLPAKAKVLADHGGKEFAHQCTACEKEAVNVSLGNLLTYPFVREGLVKKTLALKGGYYDFVKGGFELWGLEFGLSPPLSV*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C02HBa0236E02.1" strand="+"/>
                <serials PGL_serial="4" AGS_serial="4" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="17928" stop="18154"/>
                    <exon start="18516" stop="18570"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>282</number_coding_nucleotides>
                  <number_encoded_amino_acids>94</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>VRSFSSSFRMNLIQLPFGPHNFLPFFFFRLTVLLLRKINCVYVVCMYYVCMNQIWKSTRCYISEINKMETTFCINTYKKKKRSKSPWNIKDSSH</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="5">
          <exon_coordinates>
            <exon e_start="14732" e_stop="15182"/>
            <exon e_start="16380" e_stop="16441"/>
            <exon e_start="16814" e_stop="16957"/>
            <exon e_start="17056" e_stop="17104"/>
            <exon e_start="17189" e_stop="17305"/>
            <exon e_start="17391" e_stop="17530"/>
            <exon e_start="17608" e_stop="17713"/>
            <exon e_start="17794" e_stop="18150"/>
            <exon e_start="18523" e_stop="18541"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="1.000" acc_prob="0.971" e_score="1.000"/>
          <exon-intron don_prob="0.999" acc_prob="1.000" e_score="1.000"/>
          <exon-intron don_prob="0.999" acc_prob="0.999" e_score="1.000"/>
          <exon-intron don_prob="1.000" acc_prob="0.961" e_score="1.000"/>
          <exon-intron don_prob="0.999" acc_prob="0.979" e_score="1.000"/>
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              <exon start="16934" stop="16957"/>
              <exon start="17056" stop="17104"/>
              <exon start="17189" stop="17305"/>
              <exon start="17391" stop="17530"/>
              <exon start="17608" stop="17713"/>
              <exon start="17794" stop="17874"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E298369" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="16948" stop="16957"/>
              <exon start="17056" stop="17104"/>
              <exon start="17189" stop="17305"/>
              <exon start="17391" stop="17530"/>
              <exon start="17608" stop="17713"/>
              <exon start="17794" stop="18012"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E295882" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="16949" stop="16957"/>
              <exon start="17056" stop="17104"/>
              <exon start="17189" stop="17305"/>
              <exon start="17391" stop="17530"/>
              <exon start="17608" stop="17713"/>
              <exon start="17794" stop="18150"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E694906" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="17059" stop="17104"/>
              <exon start="17189" stop="17305"/>
              <exon start="17391" stop="17530"/>
              <exon start="17608" stop="17703"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E289687" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="17194" stop="17305"/>
              <exon start="17391" stop="17530"/>
              <exon start="17608" stop="17713"/>
              <exon start="17794" stop="17831"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E289789" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="17199" stop="17305"/>
              <exon start="17391" stop="17530"/>
              <exon start="17608" stop="17713"/>
              <exon start="17794" stop="17873"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E278109" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="17215" stop="17305"/>
              <exon start="17391" stop="17528"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E290692" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="17218" stop="17305"/>
              <exon start="17391" stop="17530"/>
              <exon start="17608" stop="17713"/>
              <exon start="17794" stop="18144"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E402991" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="17239" stop="17305"/>
              <exon start="17391" stop="17530"/>
              <exon start="17608" stop="17713"/>
              <exon start="17794" stop="17987"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E296253" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="17240" stop="17305"/>
              <exon start="17391" stop="17530"/>
              <exon start="17608" stop="17713"/>
              <exon start="17794" stop="17924"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E278631" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="17243" stop="17305"/>
              <exon start="17391" stop="17530"/>
              <exon start="17608" stop="17713"/>
              <exon start="17794" stop="18150"/>
              <exon start="18523" stop="18541"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E549262" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="17265" stop="17305"/>
              <exon start="17391" stop="17530"/>
              <exon start="17608" stop="17713"/>
              <exon start="17794" stop="18142"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E342393" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="17266" stop="17305"/>
              <exon start="17391" stop="17530"/>
              <exon start="17608" stop="17713"/>
              <exon start="17794" stop="18016"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E298412" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="17397" stop="17530"/>
              <exon start="17608" stop="17713"/>
              <exon start="17794" stop="17932"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E291385" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="17401" stop="17530"/>
              <exon start="17608" stop="17713"/>
              <exon start="17794" stop="18087"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E285134" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="17441" stop="17530"/>
              <exon start="17608" stop="17713"/>
              <exon start="17794" stop="18105"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E295890" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="17473" stop="17530"/>
              <exon start="17608" stop="17713"/>
              <exon start="17794" stop="18035"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E293777" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="17475" stop="17530"/>
              <exon start="17608" stop="17713"/>
              <exon start="17794" stop="18129"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E297794" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="17519" stop="17530"/>
              <exon start="17608" stop="17713"/>
              <exon start="17794" stop="18119"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E294938" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="17611" stop="17713"/>
              <exon start="17794" stop="18145"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E545781" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="17615" stop="17713"/>
              <exon start="17794" stop="18081"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E390842" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="17623" stop="17713"/>
              <exon start="17794" stop="18133"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E278439" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="17675" stop="17713"/>
              <exon start="17794" stop="18134"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E237382" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="17676" stop="17713"/>
              <exon start="17794" stop="18049"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E378485" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="17678" stop="17713"/>
              <exon start="17794" stop="18134"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E237283" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="17681" stop="17713"/>
              <exon start="17794" stop="18145"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E290956" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="17704" stop="17713"/>
              <exon start="17794" stop="18130"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E288144" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="17797" stop="18134"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E234581" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="4" AGS_serial="5" gDNA_strand="+"/>
          <translation>
            <gDNA_template>TTGAAATGTAAGGTTCTTGGCTTCTTAGCCATATGATATTAAGGCAAAAGTAAGATACAACATTGAATCTCCAACGTACAAACCTCATCTACAATGGATTGAAGCTCTCATTTGCTTAGCCATCACTTTCAACATTGTCTATTGGATTGGTTATATGTAAGAGTTCAAAAGCAGCAATAATCAAGAACACATCACTAGCTATACTATTACTAGTTAGTAACAAAGTAGTATAAAGGGCAAGCAAAAGCTAAAGGAAGCTCATTGAGAAATGTCAACTGCTTCCATTAACAATTGCCTTACTCTCTCCCCTGCTCAAGCTTCCCTTAAGAAACCTACTCGTCCCGTTGCCTTCGCAAGGCTTGGCAACTCTTCTTCTTCTTCTTCTATTCCAAGTCTCATCAGAAACGAGCCCGTCTTTGCTGCCCCTACTCCCATCATCAACCCCATTGTG : AGAGAAGAAATGGCAAAAGAATCCTACGATCAAGCCATTGCTGCACTCGAGAAACTCCTCAG : CGAGAAAGCAGAACTTGGACCAGTTGCTGCAGCAAGAGTTGACCAGATCACTGCTGAATTGAAATCAGCAGACGGCGGCAAGGCATTCGACCCTGTTGAGCACATGAAAGCTGGCTTTATTCATTTCAAGACTGAGAAATATGA : CACAAACCCAGCCTTATATGGTGAGCTAGCAAAGGGCCAGAGCCCTAAG : TTCATGGTTTTCGCGTGCTCTGACTCACGAGTCTGCCCATCCCATGTCCTCAACTTCCAACCTGGTGAGGCATTCATGGTTCGTAACATCGCCAACATGGTCCCTGCTTATGACAAG : GTCAGGTACTCTGGAGTAGGAGCAGCCATTGAATACGCCGTTCTTCATCTTAAGGTGGAGAACATCGTTGTCATTGGCCACAGTGCTTGTGGAGGTATCAAAGGTCTCATGTCACTACCTGAAGATGGTAGTGAATCAAC : TGCCTTTATTGAGGATTGGGTAAAAATTTGTTTACCTGCCAAGGCAAAGGTTCTGGCCGATCACGGAGGGAAAGAATTTGCACATCAATGCACAGCTTGTGAGAAG : GAAGCTGTGAACGTTTCACTTGGAAATCTGCTTACGTATCCATTCGTGAGAGAAGGATTGGTGAAGAAAACATTGGCATTGAAGGGAGGTTACTATGATTTCGTGAAGGGTGGATTTGAGCTGTGGGGACTTGAGTTCGGTCTTTCTCCTCCTCTTTCCGTATGAACTTAATTCAATTACCATTTGGCCCTCACAATTTCCTTCCTTTTTTTTTTTTTCGCCTGACAGTACTTTTGCTTCGCAAAATCAACTGTGTGTATGTTGTTTGTATGTATTATGTATGTATGAATCAAATATGGAAGAGCACTCGTTGTTATATTTCTGAAATAAATAAAATGGAGACTACTTTTTGTATAA : AAAAAAAAAAGAAGCAAAT</gDNA_template>
            <first_frame> L  K  C  K  V  L  G  F  L  A  I  *  Y  *  G  K  S  K  I  Q  H  *  I  S  N  V  Q  T  S  S  T  M  D  *  S  S  H  L  L  S  H  H  F  Q  H  C  L  L  D  W  L  Y  V  R  V  Q  K  Q  Q  *  S  R  T  H  H  *  L  Y  Y  Y  *  L  V  T  K  *  Y  K  G  Q  A  K  A  K  G  S  S  L  R  N  V  N  C  F  H  *  Q  L  P  Y  S  L  P  C  S  S  F  P  *  E  T  Y  S  S  R  C  L  R  K  A  W  Q  L  F  F  F  F  F  Y  S  K  S  H  Q  K  R  A  R  L  C  C  P  Y  S  H  H  Q  P  H  C   : E  R  R  N  G  K  R  I  L  R  S  S  H  C  C  T  R  E  T  P  Q  :  R  E  S  R  T  W  T  S  C  C  S  K  S  *  P  D  H  C  *  I  E  I  S  R  R  R  Q  G  I  R  P  C  *  A  H  E  S  W  L  Y  S  F  Q  D  *  E  I  *  :  H  K  P  S  L  I  W  *  A  S  K  G  P  E  P  *   : V  H  G  F  R  V  L  *  L  T  S  L  P  I  P  C  P  Q  L  P  T  W  *  G  I  H  G  S  *  H  R  Q  H  G  P  C  L  *  Q   : G  Q  V  L  W  S  R  S  S  H  *  I  R  R  S  S  S  *  G  G  E  H  R  C  H  W  P  Q  C  L  W  R  Y  Q  R  S  H  V  T  T  *  R  W  *  *  I  N  :  C  L  Y  *  G  L  G  K  N  L  F  T  C  Q  G  K  G  S  G  R  S  R  R  E  R  I  C  T  S  M  H  S  L  *  E   : G  S  C  E  R  F  T  W  K  S  A  Y  V  S  I  R  E  R  R  I  G  E  E  N  I  G  I  E  G  R  L  L  *  F  R  E  G  W  I  *  A  V  G  T  *  V  R  S  F  S  S  S  F  R  M  N  L  I  Q  L  P  F  G  P  H  N  F  L  P  F  F  F  F  R  L  T  V  L  L  L  R  K  I  N  C  V  Y  V  V  C  M  Y  Y  V  C  M  N  Q  I  W  K  S  T  R  C  Y  I  S  E  I  N  K  M  E  T  T  F  C  I   : K  K  K  K  K  Q   </first_frame>
            <second_frame>  *  N  V  R  F  L  A  S  *  P  Y  D  I  K  A  K  V  R  Y  N  I  E  S  P  T  Y  K  P  H  L  Q  W  I  E  A  L  I  C  L  A  I  T  F  N  I  V  Y  W  I  G  Y  M  *  E  F  K  S  S  N  N  Q  E  H  I  T  S  Y  T  I  T  S  *  *  Q  S  S  I  K  G  K  Q  K  L  K  E  A  H  *  E  M  S  T  A  S  I  N  N  C  L  T  L  S  P  A  Q  A  S  L  K  K  P  T  R  P  V  A  F  A  R  L  G  N  S  S  S  S  S  S  I  P  S  L  I  R  N  E  P  V  F  A  A  P  T  P  I  I  N  P  I  V  :  R  E  E  M  A  K  E  S  Y  D  Q  A  I  A  A  L  E  K  L  L  S :   E  K  A  E  L  G  P  V  A  A  A  R  V  D  Q  I  T  A  E  L  K  S  A  D  G  G  K  A  F  D  P  V  E  H  M  K  A  G  F  I  H  F  K  T  E  K  Y  D :   T  N  P  A  L  Y  G  E  L  A  K  G  Q  S  P  K  :  F  M  V  F  A  C  S  D  S  R  V  C  P  S  H  V  L  N  F  Q  P  G  E  A  F  M  V  R  N  I  A  N  M  V  P  A  Y  D  K  :  V  R  Y  S  G  V  G  A  A  I  E  Y  A  V  L  H  L  K  V  E  N  I  V  V  I  G  H  S  A  C  G  G  I  K  G  L  M  S  L  P  E  D  G  S  E  S  T :   A  F  I  E  D  W  V  K  I  C  L  P  A  K  A  K  V  L  A  D  H  G  G  K  E  F  A  H  Q  C  T  A  C  E  K  :  E  A  V  N  V  S  L  G  N  L  L  T  Y  P  F  V  R  E  G  L  V  K  K  T  L  A  L  K  G  G  Y  Y  D  F  V  K  G  G  F  E  L  W  G  L  E  F  G  L  S  P  P  L  S  V  *  T  *  F  N  Y  H  L  A  L  T  I  S  F  L  F  F  F  F  A  *  Q  Y  F  C  F  A  K  S  T  V  C  M  L  F  V  C  I  M  Y  V  *  I  K  Y  G  R  A  L  V  V  I  F  L  K  *  I  K  W  R  L  L  F  V  *  :  K  K  K  R  S  K  </second_frame>
            <third_frame>   E  M  *  G  S  W  L  L  S  H  M  I  L  R  Q  K  *  D  T  T  L  N  L  Q  R  T  N  L  I  Y  N  G  L  K  L  S  F  A  *  P  S  L  S  T  L  S  I  G  L  V  I  C  K  S  S  K  A  A  I  I  K  N  T  S  L  A  I  L  L  L  V  S  N  K  V  V  *  R  A  S  K  S  *  R  K  L  I  E  K  C  Q  L  L  P  L  T  I  A  L  L  S  P  L  L  K  L  P  L  R  N  L  L  V  P  L  P  S  Q  G  L  A  T  L  L  L  L  L  L  F  Q  V  S  S  E  T  S  P  S  L  L  P  L  L  P  S  S  T  P  L  * :   E  K  K  W  Q  K  N  P  T  I  K  P  L  L  H  S  R  N  S  S   : A  R  K  Q  N  L  D  Q  L  L  Q  Q  E  L  T  R  S  L  L  N  *  N  Q  Q  T  A  A  R  H  S  T  L  L  S  T  *  K  L  A  L  F  I  S  R  L  R  N  M   : T  Q  T  Q  P  Y  M  V  S  *  Q  R  A  R  A  L  S :   S  W  F  S  R  A  L  T  H  E  S  A  H  P  M  S  S  T  S  N  L  V  R  H  S  W  F  V  T  S  P  T  W  S  L  L  M  T  R :   S  G  T  L  E  *  E  Q  P  L  N  T  P  F  F  I  L  R  W  R  T  S  L  S  L  A  T  V  L  V  E  V  S  K  V  S  C  H  Y  L  K  M  V  V  N  Q   : L  P  L  L  R  I  G  *  K  F  V  Y  L  P  R  Q  R  F  W  P  I  T  E  G  K  N  L  H  I  N  A  Q  L  V  R  R :   K  L  *  T  F  H  L  E  I  C  L  R  I  H  S  *  E  K  D  W  *  R  K  H  W  H  *  R  E  V  T  M  I  S  *  R  V  D  L  S  C  G  D  L  S  S  V  F  L  L  L  F  P  Y  E  L  N  S  I  T  I  W  P  S  Q  F  P  S  F  F  F  F  S  P  D  S  T  F  A  S  Q  N  Q  L  C  V  C  C  L  Y  V  L  C  M  Y  E  S  N  M  E  E  H  S  L  L  Y  F  *  N  K  *  N  G  D  Y  F  L  Y  K :   K  K  K  E  A  N </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02HBa0236E02.1" strand="+"/>
                <serials PGL_serial="4" AGS_serial="5" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="14997" stop="15182"/>
                    <exon start="16380" stop="16441"/>
                    <exon start="16814" stop="16957"/>
                    <exon start="17056" stop="17104"/>
                    <exon start="17189" stop="17305"/>
                    <exon start="17391" stop="17530"/>
                    <exon start="17608" stop="17713"/>
                    <exon start="17794" stop="17958"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>966</number_coding_nucleotides>
                  <number_encoded_amino_acids>322</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>EMSTASINNCLTLSPAQASLKKPTRPVAFARLGNSSSSSSIPSLIRNEPVFAAPTPIINPIVREEMAKESYDQAIAALEKLLSEKAELGPVAAARVDQITAELKSADGGKAFDPVEHMKAGFIHFKTEKYDTNPALYGELAKGQSPKFMVFACSDSRVCPSHVLNFQPGEAFMVRNIANMVPAYDKVRYSGVGAAIEYAVLHLKVENIVVIGHSACGGIKGLMSLPEDGSESTAFIEDWVKICLPAKAKVLADHGGKEFAHQCTACEKEAVNVSLGNLLTYPFVREGLVKKTLALKGGYYDFVKGGFELWGLEFGLSPPLSV*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C02HBa0236E02.1" strand="+"/>
                <serials PGL_serial="4" AGS_serial="5" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="17928" stop="18150"/>
                    <exon start="18523" stop="18539"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>240</number_coding_nucleotides>
                  <number_encoded_amino_acids>80</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>VRSFSSSFRMNLIQLPFGPHNFLPFFFFRLTVLLLRKINCVYVVCMYYVCMNQIWKSTRCYISEINKMETTFCIKKKKKQ</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="6">
          <exon_coordinates>
            <exon e_start="14732" e_stop="15182"/>
            <exon e_start="16380" e_stop="16441"/>
            <exon e_start="16814" e_stop="16957"/>
            <exon e_start="17056" e_stop="17104"/>
            <exon e_start="17189" e_stop="17305"/>
            <exon e_start="17391" e_stop="17530"/>
            <exon e_start="17608" e_stop="17713"/>
            <exon e_start="17794" e_stop="18128"/>
            <exon e_start="18523" e_stop="18548"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="1.000" acc_prob="0.971" e_score="1.000"/>
          <exon-intron don_prob="0.999" acc_prob="1.000" e_score="1.000"/>
          <exon-intron don_prob="0.999" acc_prob="0.999" e_score="1.000"/>
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          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="16948" stop="16957"/>
              <exon start="17056" stop="17104"/>
              <exon start="17189" stop="17305"/>
              <exon start="17391" stop="17530"/>
              <exon start="17608" stop="17713"/>
              <exon start="17794" stop="18012"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E295882" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="17059" stop="17104"/>
              <exon start="17189" stop="17305"/>
              <exon start="17391" stop="17530"/>
              <exon start="17608" stop="17703"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E289687" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="17194" stop="17305"/>
              <exon start="17391" stop="17530"/>
              <exon start="17608" stop="17713"/>
              <exon start="17794" stop="17831"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E289789" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="17199" stop="17305"/>
              <exon start="17391" stop="17530"/>
              <exon start="17608" stop="17713"/>
              <exon start="17794" stop="17873"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E278109" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="17215" stop="17305"/>
              <exon start="17391" stop="17528"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E290692" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="17239" stop="17305"/>
              <exon start="17391" stop="17530"/>
              <exon start="17608" stop="17713"/>
              <exon start="17794" stop="17987"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E296253" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="17240" stop="17305"/>
              <exon start="17391" stop="17530"/>
              <exon start="17608" stop="17713"/>
              <exon start="17794" stop="17924"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E278631" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="17266" stop="17305"/>
              <exon start="17391" stop="17530"/>
              <exon start="17608" stop="17713"/>
              <exon start="17794" stop="18016"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E298412" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="17397" stop="17530"/>
              <exon start="17608" stop="17713"/>
              <exon start="17794" stop="17932"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E291385" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="17401" stop="17530"/>
              <exon start="17608" stop="17713"/>
              <exon start="17794" stop="18087"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E285134" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="17435" stop="17530"/>
              <exon start="17608" stop="17713"/>
              <exon start="17794" stop="18128"/>
              <exon start="18523" stop="18548"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E321065" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="17441" stop="17530"/>
              <exon start="17608" stop="17713"/>
              <exon start="17794" stop="18105"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E295890" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="17473" stop="17530"/>
              <exon start="17608" stop="17713"/>
              <exon start="17794" stop="18035"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E293777" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="17519" stop="17530"/>
              <exon start="17608" stop="17713"/>
              <exon start="17794" stop="18119"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E294938" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="17615" stop="17713"/>
              <exon start="17794" stop="18081"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E390842" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="17676" stop="17713"/>
              <exon start="17794" stop="18049"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E378485" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="4" AGS_serial="6" gDNA_strand="+"/>
          <translation>
            <gDNA_template>TTGAAATGTAAGGTTCTTGGCTTCTTAGCCATATGATATTAAGGCAAAAGTAAGATACAACATTGAATCTCCAACGTACAAACCTCATCTACAATGGATTGAAGCTCTCATTTGCTTAGCCATCACTTTCAACATTGTCTATTGGATTGGTTATATGTAAGAGTTCAAAAGCAGCAATAATCAAGAACACATCACTAGCTATACTATTACTAGTTAGTAACAAAGTAGTATAAAGGGCAAGCAAAAGCTAAAGGAAGCTCATTGAGAAATGTCAACTGCTTCCATTAACAATTGCCTTACTCTCTCCCCTGCTCAAGCTTCCCTTAAGAAACCTACTCGTCCCGTTGCCTTCGCAAGGCTTGGCAACTCTTCTTCTTCTTCTTCTATTCCAAGTCTCATCAGAAACGAGCCCGTCTTTGCTGCCCCTACTCCCATCATCAACCCCATTGTG : AGAGAAGAAATGGCAAAAGAATCCTACGATCAAGCCATTGCTGCACTCGAGAAACTCCTCAG : CGAGAAAGCAGAACTTGGACCAGTTGCTGCAGCAAGAGTTGACCAGATCACTGCTGAATTGAAATCAGCAGACGGCGGCAAGGCATTCGACCCTGTTGAGCACATGAAAGCTGGCTTTATTCATTTCAAGACTGAGAAATATGA : CACAAACCCAGCCTTATATGGTGAGCTAGCAAAGGGCCAGAGCCCTAAG : TTCATGGTTTTCGCGTGCTCTGACTCACGAGTCTGCCCATCCCATGTCCTCAACTTCCAACCTGGTGAGGCATTCATGGTTCGTAACATCGCCAACATGGTCCCTGCTTATGACAAG : GTCAGGTACTCTGGAGTAGGAGCAGCCATTGAATACGCCGTTCTTCATCTTAAGGTGGAGAACATCGTTGTCATTGGCCACAGTGCTTGTGGAGGTATCAAAGGTCTCATGTCACTACCTGAAGATGGTAGTGAATCAAC : TGCCTTTATTGAGGATTGGGTAAAAATTTGTTTACCTGCCAAGGCAAAGGTTCTGGCCGATCACGGAGGGAAAGAATTTGCACATCAATGCACAGCTTGTGAGAAG : GAAGCTGTGAACGTTTCACTTGGAAATCTGCTTACGTATCCATTCGTGAGAGAAGGATTGGTGAAGAAAACATTGGCATTGAAGGGAGGTTACTATGATTTCGTGAAGGGTGGATTTGAGCTGTGGGGACTTGAGTTCGGTCTTTCTCCTCCTCTTTCCGTATGAACTTAATTCAATTACCATTTGGCCCTCACAATTTCCTTCCTTTTTTTTTTTTTCGCCTGACAGTACTTTTGCTTCGCAAAATCAACTGTGTGTATGTTGTTTGTATGTATTATGTATGTATGAATCAAATATGGAAGAGCACTCGTTGTTATATTTCTGAAATAAATAAA : AAAAAAAAAAGAAGCAAATCACCATG</gDNA_template>
            <first_frame> L  K  C  K  V  L  G  F  L  A  I  *  Y  *  G  K  S  K  I  Q  H  *  I  S  N  V  Q  T  S  S  T  M  D  *  S  S  H  L  L  S  H  H  F  Q  H  C  L  L  D  W  L  Y  V  R  V  Q  K  Q  Q  *  S  R  T  H  H  *  L  Y  Y  Y  *  L  V  T  K  *  Y  K  G  Q  A  K  A  K  G  S  S  L  R  N  V  N  C  F  H  *  Q  L  P  Y  S  L  P  C  S  S  F  P  *  E  T  Y  S  S  R  C  L  R  K  A  W  Q  L  F  F  F  F  F  Y  S  K  S  H  Q  K  R  A  R  L  C  C  P  Y  S  H  H  Q  P  H  C   : E  R  R  N  G  K  R  I  L  R  S  S  H  C  C  T  R  E  T  P  Q  :  R  E  S  R  T  W  T  S  C  C  S  K  S  *  P  D  H  C  *  I  E  I  S  R  R  R  Q  G  I  R  P  C  *  A  H  E  S  W  L  Y  S  F  Q  D  *  E  I  *  :  H  K  P  S  L  I  W  *  A  S  K  G  P  E  P  *   : V  H  G  F  R  V  L  *  L  T  S  L  P  I  P  C  P  Q  L  P  T  W  *  G  I  H  G  S  *  H  R  Q  H  G  P  C  L  *  Q   : G  Q  V  L  W  S  R  S  S  H  *  I  R  R  S  S  S  *  G  G  E  H  R  C  H  W  P  Q  C  L  W  R  Y  Q  R  S  H  V  T  T  *  R  W  *  *  I  N  :  C  L  Y  *  G  L  G  K  N  L  F  T  C  Q  G  K  G  S  G  R  S  R  R  E  R  I  C  T  S  M  H  S  L  *  E   : G  S  C  E  R  F  T  W  K  S  A  Y  V  S  I  R  E  R  R  I  G  E  E  N  I  G  I  E  G  R  L  L  *  F  R  E  G  W  I  *  A  V  G  T  *  V  R  S  F  S  S  S  F  R  M  N  L  I  Q  L  P  F  G  P  H  N  F  L  P  F  F  F  F  R  L  T  V  L  L  L  R  K  I  N  C  V  Y  V  V  C  M  Y  Y  V  C  M  N  Q  I  W  K  S  T  R  C  Y  I  S  E  I  N  K  :  K  K  K  R  S  K  S  P   </first_frame>
            <second_frame>  *  N  V  R  F  L  A  S  *  P  Y  D  I  K  A  K  V  R  Y  N  I  E  S  P  T  Y  K  P  H  L  Q  W  I  E  A  L  I  C  L  A  I  T  F  N  I  V  Y  W  I  G  Y  M  *  E  F  K  S  S  N  N  Q  E  H  I  T  S  Y  T  I  T  S  *  *  Q  S  S  I  K  G  K  Q  K  L  K  E  A  H  *  E  M  S  T  A  S  I  N  N  C  L  T  L  S  P  A  Q  A  S  L  K  K  P  T  R  P  V  A  F  A  R  L  G  N  S  S  S  S  S  S  I  P  S  L  I  R  N  E  P  V  F  A  A  P  T  P  I  I  N  P  I  V  :  R  E  E  M  A  K  E  S  Y  D  Q  A  I  A  A  L  E  K  L  L  S :   E  K  A  E  L  G  P  V  A  A  A  R  V  D  Q  I  T  A  E  L  K  S  A  D  G  G  K  A  F  D  P  V  E  H  M  K  A  G  F  I  H  F  K  T  E  K  Y  D :   T  N  P  A  L  Y  G  E  L  A  K  G  Q  S  P  K  :  F  M  V  F  A  C  S  D  S  R  V  C  P  S  H  V  L  N  F  Q  P  G  E  A  F  M  V  R  N  I  A  N  M  V  P  A  Y  D  K  :  V  R  Y  S  G  V  G  A  A  I  E  Y  A  V  L  H  L  K  V  E  N  I  V  V  I  G  H  S  A  C  G  G  I  K  G  L  M  S  L  P  E  D  G  S  E  S  T :   A  F  I  E  D  W  V  K  I  C  L  P  A  K  A  K  V  L  A  D  H  G  G  K  E  F  A  H  Q  C  T  A  C  E  K  :  E  A  V  N  V  S  L  G  N  L  L  T  Y  P  F  V  R  E  G  L  V  K  K  T  L  A  L  K  G  G  Y  Y  D  F  V  K  G  G  F  E  L  W  G  L  E  F  G  L  S  P  P  L  S  V  *  T  *  F  N  Y  H  L  A  L  T  I  S  F  L  F  F  F  F  A  *  Q  Y  F  C  F  A  K  S  T  V  C  M  L  F  V  C  I  M  Y  V  *  I  K  Y  G  R  A  L  V  V  I  F  L  K  *  I  K :   K  K  K  E  A  N  H  H  </second_frame>
            <third_frame>   E  M  *  G  S  W  L  L  S  H  M  I  L  R  Q  K  *  D  T  T  L  N  L  Q  R  T  N  L  I  Y  N  G  L  K  L  S  F  A  *  P  S  L  S  T  L  S  I  G  L  V  I  C  K  S  S  K  A  A  I  I  K  N  T  S  L  A  I  L  L  L  V  S  N  K  V  V  *  R  A  S  K  S  *  R  K  L  I  E  K  C  Q  L  L  P  L  T  I  A  L  L  S  P  L  L  K  L  P  L  R  N  L  L  V  P  L  P  S  Q  G  L  A  T  L  L  L  L  L  L  F  Q  V  S  S  E  T  S  P  S  L  L  P  L  L  P  S  S  T  P  L  * :   E  K  K  W  Q  K  N  P  T  I  K  P  L  L  H  S  R  N  S  S   : A  R  K  Q  N  L  D  Q  L  L  Q  Q  E  L  T  R  S  L  L  N  *  N  Q  Q  T  A  A  R  H  S  T  L  L  S  T  *  K  L  A  L  F  I  S  R  L  R  N  M   : T  Q  T  Q  P  Y  M  V  S  *  Q  R  A  R  A  L  S :   S  W  F  S  R  A  L  T  H  E  S  A  H  P  M  S  S  T  S  N  L  V  R  H  S  W  F  V  T  S  P  T  W  S  L  L  M  T  R :   S  G  T  L  E  *  E  Q  P  L  N  T  P  F  F  I  L  R  W  R  T  S  L  S  L  A  T  V  L  V  E  V  S  K  V  S  C  H  Y  L  K  M  V  V  N  Q   : L  P  L  L  R  I  G  *  K  F  V  Y  L  P  R  Q  R  F  W  P  I  T  E  G  K  N  L  H  I  N  A  Q  L  V  R  R :   K  L  *  T  F  H  L  E  I  C  L  R  I  H  S  *  E  K  D  W  *  R  K  H  W  H  *  R  E  V  T  M  I  S  *  R  V  D  L  S  C  G  D  L  S  S  V  F  L  L  L  F  P  Y  E  L  N  S  I  T  I  W  P  S  Q  F  P  S  F  F  F  F  S  P  D  S  T  F  A  S  Q  N  Q  L  C  V  C  C  L  Y  V  L  C  M  Y  E  S  N  M  E  E  H  S  L  L  Y  F  *  N  K  *   : K  K  K  K  K  Q  I  T  M </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02HBa0236E02.1" strand="+"/>
                <serials PGL_serial="4" AGS_serial="6" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="14997" stop="15182"/>
                    <exon start="16380" stop="16441"/>
                    <exon start="16814" stop="16957"/>
                    <exon start="17056" stop="17104"/>
                    <exon start="17189" stop="17305"/>
                    <exon start="17391" stop="17530"/>
                    <exon start="17608" stop="17713"/>
                    <exon start="17794" stop="17958"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>966</number_coding_nucleotides>
                  <number_encoded_amino_acids>322</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>EMSTASINNCLTLSPAQASLKKPTRPVAFARLGNSSSSSSIPSLIRNEPVFAAPTPIINPIVREEMAKESYDQAIAALEKLLSEKAELGPVAAARVDQITAELKSADGGKAFDPVEHMKAGFIHFKTEKYDTNPALYGELAKGQSPKFMVFACSDSRVCPSHVLNFQPGEAFMVRNIANMVPAYDKVRYSGVGAAIEYAVLHLKVENIVVIGHSACGGIKGLMSLPEDGSESTAFIEDWVKICLPAKAKVLADHGGKEFAHQCTACEKEAVNVSLGNLLTYPFVREGLVKKTLALKGGYYDFVKGGFELWGLEFGLSPPLSV*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C02HBa0236E02.1" strand="+"/>
                <serials PGL_serial="4" AGS_serial="6" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="17928" stop="18128"/>
                    <exon start="18523" stop="18546"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>225</number_coding_nucleotides>
                  <number_encoded_amino_acids>75</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>VRSFSSSFRMNLIQLPFGPHNFLPFFFFRLTVLLLRKINCVYVVCMYYVCMNQIWKSTRCYISEINKKKKRSKSP</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="7">
          <exon_coordinates>
            <exon e_start="14732" e_stop="15182"/>
            <exon e_start="16380" e_stop="16441"/>
            <exon e_start="16814" e_stop="16957"/>
            <exon e_start="17056" e_stop="17104"/>
            <exon e_start="17189" e_stop="17305"/>
            <exon e_start="17391" e_stop="17530"/>
            <exon e_start="17608" e_stop="17713"/>
            <exon e_start="17794" e_stop="18088"/>
            <exon e_start="18507" e_stop="18534"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="1.000" acc_prob="0.971" e_score="1.000"/>
          <exon-intron don_prob="0.999" acc_prob="1.000" e_score="1.000"/>
          <exon-intron don_prob="0.999" acc_prob="0.999" e_score="1.000"/>
          <exon-intron don_prob="1.000" acc_prob="0.961" e_score="1.000"/>
          <exon-intron don_prob="0.999" acc_prob="0.979" e_score="1.000"/>
          <exon-intron don_prob="0.999" acc_prob="0.948" e_score="1.000"/>
          <exon-intron don_prob="1.000" acc_prob="0.997" e_score="1.000"/>
          <exon-intron don_prob="0.000" acc_prob="0.000" e_score="0.990"/>
          <exon-only e_score="0.679"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="14732" e_stop="15182" e_length="451"/>
          </exon>
          <intron i_serial="1" don_prob="1.000" acc_prob="0.971">
            <gDNA_intron_boundary i_start="15183" i_stop="16379" i_length="1197"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="16380" e_stop="16441" e_length="62"/>
          </exon>
          <intron i_serial="2" don_prob="0.999" acc_prob="1.000">
            <gDNA_intron_boundary i_start="16442" i_stop="16813" i_length="372"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="16814" e_stop="16957" e_length="144"/>
          </exon>
          <intron i_serial="3" don_prob="0.999" acc_prob="0.999">
            <gDNA_intron_boundary i_start="16958" i_stop="17055" i_length="98"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="17056" e_stop="17104" e_length="49"/>
          </exon>
          <intron i_serial="4" don_prob="1.000" acc_prob="0.961">
            <gDNA_intron_boundary i_start="17105" i_stop="17188" i_length="84"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="17189" e_stop="17305" e_length="117"/>
          </exon>
          <intron i_serial="5" don_prob="0.999" acc_prob="0.979">
            <gDNA_intron_boundary i_start="17306" i_stop="17390" i_length="85"/>
          </intron>
          <exon e_serial="6" e_score="1.000">
            <gDNA_exon_boundary e_start="17391" e_stop="17530" e_length="140"/>
          </exon>
          <intron i_serial="6" don_prob="0.999" acc_prob="0.948">
            <gDNA_intron_boundary i_start="17531" i_stop="17607" i_length="77"/>
          </intron>
          <exon e_serial="7" e_score="1.000">
            <gDNA_exon_boundary e_start="17608" e_stop="17713" e_length="106"/>
          </exon>
          <intron i_serial="7" don_prob="1.000" acc_prob="0.997">
            <gDNA_intron_boundary i_start="17714" i_stop="17793" i_length="80"/>
          </intron>
          <exon e_serial="8" e_score="0.990">
            <gDNA_exon_boundary e_start="17794" e_stop="18088" e_length="295"/>
          </exon>
          <intron i_serial="8" don_prob="0.000" acc_prob="0.000">
            <gDNA_intron_boundary i_start="18089" i_stop="18506" i_length="418"/>
          </intron>
          <exon e_serial="9" e_score="0.679">
            <gDNA_exon_boundary e_start="18507" e_stop="18534" e_length="28"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
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          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="17676" stop="17713"/>
              <exon start="17794" stop="18049"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E378485" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="4" AGS_serial="7" gDNA_strand="+"/>
          <translation>
            <gDNA_template>TTGAAATGTAAGGTTCTTGGCTTCTTAGCCATATGATATTAAGGCAAAAGTAAGATACAACATTGAATCTCCAACGTACAAACCTCATCTACAATGGATTGAAGCTCTCATTTGCTTAGCCATCACTTTCAACATTGTCTATTGGATTGGTTATATGTAAGAGTTCAAAAGCAGCAATAATCAAGAACACATCACTAGCTATACTATTACTAGTTAGTAACAAAGTAGTATAAAGGGCAAGCAAAAGCTAAAGGAAGCTCATTGAGAAATGTCAACTGCTTCCATTAACAATTGCCTTACTCTCTCCCCTGCTCAAGCTTCCCTTAAGAAACCTACTCGTCCCGTTGCCTTCGCAAGGCTTGGCAACTCTTCTTCTTCTTCTTCTATTCCAAGTCTCATCAGAAACGAGCCCGTCTTTGCTGCCCCTACTCCCATCATCAACCCCATTGTG : AGAGAAGAAATGGCAAAAGAATCCTACGATCAAGCCATTGCTGCACTCGAGAAACTCCTCAG : CGAGAAAGCAGAACTTGGACCAGTTGCTGCAGCAAGAGTTGACCAGATCACTGCTGAATTGAAATCAGCAGACGGCGGCAAGGCATTCGACCCTGTTGAGCACATGAAAGCTGGCTTTATTCATTTCAAGACTGAGAAATATGA : CACAAACCCAGCCTTATATGGTGAGCTAGCAAAGGGCCAGAGCCCTAAG : TTCATGGTTTTCGCGTGCTCTGACTCACGAGTCTGCCCATCCCATGTCCTCAACTTCCAACCTGGTGAGGCATTCATGGTTCGTAACATCGCCAACATGGTCCCTGCTTATGACAAG : GTCAGGTACTCTGGAGTAGGAGCAGCCATTGAATACGCCGTTCTTCATCTTAAGGTGGAGAACATCGTTGTCATTGGCCACAGTGCTTGTGGAGGTATCAAAGGTCTCATGTCACTACCTGAAGATGGTAGTGAATCAAC : TGCCTTTATTGAGGATTGGGTAAAAATTTGTTTACCTGCCAAGGCAAAGGTTCTGGCCGATCACGGAGGGAAAGAATTTGCACATCAATGCACAGCTTGTGAGAAG : GAAGCTGTGAACGTTTCACTTGGAAATCTGCTTACGTATCCATTCGTGAGAGAAGGATTGGTGAAGAAAACATTGGCATTGAAGGGAGGTTACTATGATTTCGTGAAGGGTGGATTTGAGCTGTGGGGACTTGAGTTCGGTCTTTCTCCTCCTCTTTCCGTATGAACTTAATTCAATTACCATTTGGCCCTCACAATTTCCTTCCTTTTTTTTTTTTTCGCCTGACAGTACTTTTGCTTCGCAAAATCAACTGTGTGTATGTTGTTTGTATGTATTATGTATGTATGAATCAAAT : TAATAATCTATATAAGAAAAAAAAAAGA</gDNA_template>
            <first_frame> L  K  C  K  V  L  G  F  L  A  I  *  Y  *  G  K  S  K  I  Q  H  *  I  S  N  V  Q  T  S  S  T  M  D  *  S  S  H  L  L  S  H  H  F  Q  H  C  L  L  D  W  L  Y  V  R  V  Q  K  Q  Q  *  S  R  T  H  H  *  L  Y  Y  Y  *  L  V  T  K  *  Y  K  G  Q  A  K  A  K  G  S  S  L  R  N  V  N  C  F  H  *  Q  L  P  Y  S  L  P  C  S  S  F  P  *  E  T  Y  S  S  R  C  L  R  K  A  W  Q  L  F  F  F  F  F  Y  S  K  S  H  Q  K  R  A  R  L  C  C  P  Y  S  H  H  Q  P  H  C   : E  R  R  N  G  K  R  I  L  R  S  S  H  C  C  T  R  E  T  P  Q  :  R  E  S  R  T  W  T  S  C  C  S  K  S  *  P  D  H  C  *  I  E  I  S  R  R  R  Q  G  I  R  P  C  *  A  H  E  S  W  L  Y  S  F  Q  D  *  E  I  *  :  H  K  P  S  L  I  W  *  A  S  K  G  P  E  P  *   : V  H  G  F  R  V  L  *  L  T  S  L  P  I  P  C  P  Q  L  P  T  W  *  G  I  H  G  S  *  H  R  Q  H  G  P  C  L  *  Q   : G  Q  V  L  W  S  R  S  S  H  *  I  R  R  S  S  S  *  G  G  E  H  R  C  H  W  P  Q  C  L  W  R  Y  Q  R  S  H  V  T  T  *  R  W  *  *  I  N  :  C  L  Y  *  G  L  G  K  N  L  F  T  C  Q  G  K  G  S  G  R  S  R  R  E  R  I  C  T  S  M  H  S  L  *  E   : G  S  C  E  R  F  T  W  K  S  A  Y  V  S  I  R  E  R  R  I  G  E  E  N  I  G  I  E  G  R  L  L  *  F  R  E  G  W  I  *  A  V  G  T  *  V  R  S  F  S  S  S  F  R  M  N  L  I  Q  L  P  F  G  P  H  N  F  L  P  F  F  F  F  R  L  T  V  L  L  L  R  K  I  N  C  V  Y  V  V  C  M  Y  Y  V  C  M  N  Q  I :   N  N  L  Y  K  K  K  K  R </first_frame>
            <second_frame>  *  N  V  R  F  L  A  S  *  P  Y  D  I  K  A  K  V  R  Y  N  I  E  S  P  T  Y  K  P  H  L  Q  W  I  E  A  L  I  C  L  A  I  T  F  N  I  V  Y  W  I  G  Y  M  *  E  F  K  S  S  N  N  Q  E  H  I  T  S  Y  T  I  T  S  *  *  Q  S  S  I  K  G  K  Q  K  L  K  E  A  H  *  E  M  S  T  A  S  I  N  N  C  L  T  L  S  P  A  Q  A  S  L  K  K  P  T  R  P  V  A  F  A  R  L  G  N  S  S  S  S  S  S  I  P  S  L  I  R  N  E  P  V  F  A  A  P  T  P  I  I  N  P  I  V  :  R  E  E  M  A  K  E  S  Y  D  Q  A  I  A  A  L  E  K  L  L  S :   E  K  A  E  L  G  P  V  A  A  A  R  V  D  Q  I  T  A  E  L  K  S  A  D  G  G  K  A  F  D  P  V  E  H  M  K  A  G  F  I  H  F  K  T  E  K  Y  D :   T  N  P  A  L  Y  G  E  L  A  K  G  Q  S  P  K  :  F  M  V  F  A  C  S  D  S  R  V  C  P  S  H  V  L  N  F  Q  P  G  E  A  F  M  V  R  N  I  A  N  M  V  P  A  Y  D  K  :  V  R  Y  S  G  V  G  A  A  I  E  Y  A  V  L  H  L  K  V  E  N  I  V  V  I  G  H  S  A  C  G  G  I  K  G  L  M  S  L  P  E  D  G  S  E  S  T :   A  F  I  E  D  W  V  K  I  C  L  P  A  K  A  K  V  L  A  D  H  G  G  K  E  F  A  H  Q  C  T  A  C  E  K  :  E  A  V  N  V  S  L  G  N  L  L  T  Y  P  F  V  R  E  G  L  V  K  K  T  L  A  L  K  G  G  Y  Y  D  F  V  K  G  G  F  E  L  W  G  L  E  F  G  L  S  P  P  L  S  V  *  T  *  F  N  Y  H  L  A  L  T  I  S  F  L  F  F  F  F  A  *  Q  Y  F  C  F  A  K  S  T  V  C  M  L  F  V  C  I  M  Y  V  *  I  K   : L  I  I  Y  I  R  K  K  K   </second_frame>
            <third_frame>   E  M  *  G  S  W  L  L  S  H  M  I  L  R  Q  K  *  D  T  T  L  N  L  Q  R  T  N  L  I  Y  N  G  L  K  L  S  F  A  *  P  S  L  S  T  L  S  I  G  L  V  I  C  K  S  S  K  A  A  I  I  K  N  T  S  L  A  I  L  L  L  V  S  N  K  V  V  *  R  A  S  K  S  *  R  K  L  I  E  K  C  Q  L  L  P  L  T  I  A  L  L  S  P  L  L  K  L  P  L  R  N  L  L  V  P  L  P  S  Q  G  L  A  T  L  L  L  L  L  L  F  Q  V  S  S  E  T  S  P  S  L  L  P  L  L  P  S  S  T  P  L  * :   E  K  K  W  Q  K  N  P  T  I  K  P  L  L  H  S  R  N  S  S   : A  R  K  Q  N  L  D  Q  L  L  Q  Q  E  L  T  R  S  L  L  N  *  N  Q  Q  T  A  A  R  H  S  T  L  L  S  T  *  K  L  A  L  F  I  S  R  L  R  N  M   : T  Q  T  Q  P  Y  M  V  S  *  Q  R  A  R  A  L  S :   S  W  F  S  R  A  L  T  H  E  S  A  H  P  M  S  S  T  S  N  L  V  R  H  S  W  F  V  T  S  P  T  W  S  L  L  M  T  R :   S  G  T  L  E  *  E  Q  P  L  N  T  P  F  F  I  L  R  W  R  T  S  L  S  L  A  T  V  L  V  E  V  S  K  V  S  C  H  Y  L  K  M  V  V  N  Q   : L  P  L  L  R  I  G  *  K  F  V  Y  L  P  R  Q  R  F  W  P  I  T  E  G  K  N  L  H  I  N  A  Q  L  V  R  R :   K  L  *  T  F  H  L  E  I  C  L  R  I  H  S  *  E  K  D  W  *  R  K  H  W  H  *  R  E  V  T  M  I  S  *  R  V  D  L  S  C  G  D  L  S  S  V  F  L  L  L  F  P  Y  E  L  N  S  I  T  I  W  P  S  Q  F  P  S  F  F  F  F  S  P  D  S  T  F  A  S  Q  N  Q  L  C  V  C  C  L  Y  V  L  C  M  Y  E  S  N  :  *  *  S  I  *  E  K  K  K  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02HBa0236E02.1" strand="+"/>
                <serials PGL_serial="4" AGS_serial="7" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="14997" stop="15182"/>
                    <exon start="16380" stop="16441"/>
                    <exon start="16814" stop="16957"/>
                    <exon start="17056" stop="17104"/>
                    <exon start="17189" stop="17305"/>
                    <exon start="17391" stop="17530"/>
                    <exon start="17608" stop="17713"/>
                    <exon start="17794" stop="17958"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>966</number_coding_nucleotides>
                  <number_encoded_amino_acids>322</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>EMSTASINNCLTLSPAQASLKKPTRPVAFARLGNSSSSSSIPSLIRNEPVFAAPTPIINPIVREEMAKESYDQAIAALEKLLSEKAELGPVAAARVDQITAELKSADGGKAFDPVEHMKAGFIHFKTEKYDTNPALYGELAKGQSPKFMVFACSDSRVCPSHVLNFQPGEAFMVRNIANMVPAYDKVRYSGVGAAIEYAVLHLKVENIVVIGHSACGGIKGLMSLPEDGSESTAFIEDWVKICLPAKAKVLADHGGKEFAHQCTACEKEAVNVSLGNLLTYPFVREGLVKKTLALKGGYYDFVKGGFELWGLEFGLSPPLSV*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="8">
          <exon_coordinates>
            <exon e_start="14732" e_stop="15182"/>
            <exon e_start="16380" e_stop="16441"/>
            <exon e_start="16814" e_stop="16957"/>
            <exon e_start="17056" e_stop="17104"/>
            <exon e_start="17189" e_stop="17305"/>
            <exon e_start="17391" e_stop="17530"/>
            <exon e_start="17608" e_stop="17713"/>
            <exon e_start="17794" e_stop="17952"/>
            <exon e_start="18176" e_stop="18337"/>
            <exon e_start="18523" e_stop="18536"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="1.000" acc_prob="0.971" e_score="1.000"/>
          <exon-intron don_prob="0.999" acc_prob="1.000" e_score="1.000"/>
          <exon-intron don_prob="0.999" acc_prob="0.999" e_score="1.000"/>
          <exon-intron don_prob="1.000" acc_prob="0.961" e_score="1.000"/>
          <exon-intron don_prob="0.999" acc_prob="0.979" e_score="1.000"/>
          <exon-intron don_prob="0.999" acc_prob="0.948" e_score="1.000"/>
          <exon-intron don_prob="1.000" acc_prob="0.997" e_score="1.000"/>
          <exon-intron don_prob="0.934" acc_prob="0.999" e_score="1.000"/>
          <exon-intron don_prob="0.000" acc_prob="0.000" e_score="1.000"/>
          <exon-only e_score="0.857"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="14732" e_stop="15182" e_length="451"/>
          </exon>
          <intron i_serial="1" don_prob="1.000" acc_prob="0.971">
            <gDNA_intron_boundary i_start="15183" i_stop="16379" i_length="1197"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="16380" e_stop="16441" e_length="62"/>
          </exon>
          <intron i_serial="2" don_prob="0.999" acc_prob="1.000">
            <gDNA_intron_boundary i_start="16442" i_stop="16813" i_length="372"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="16814" e_stop="16957" e_length="144"/>
          </exon>
          <intron i_serial="3" don_prob="0.999" acc_prob="0.999">
            <gDNA_intron_boundary i_start="16958" i_stop="17055" i_length="98"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="17056" e_stop="17104" e_length="49"/>
          </exon>
          <intron i_serial="4" don_prob="1.000" acc_prob="0.961">
            <gDNA_intron_boundary i_start="17105" i_stop="17188" i_length="84"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="17189" e_stop="17305" e_length="117"/>
          </exon>
          <intron i_serial="5" don_prob="0.999" acc_prob="0.979">
            <gDNA_intron_boundary i_start="17306" i_stop="17390" i_length="85"/>
          </intron>
          <exon e_serial="6" e_score="1.000">
            <gDNA_exon_boundary e_start="17391" e_stop="17530" e_length="140"/>
          </exon>
          <intron i_serial="6" don_prob="0.999" acc_prob="0.948">
            <gDNA_intron_boundary i_start="17531" i_stop="17607" i_length="77"/>
          </intron>
          <exon e_serial="7" e_score="1.000">
            <gDNA_exon_boundary e_start="17608" e_stop="17713" e_length="106"/>
          </exon>
          <intron i_serial="7" don_prob="1.000" acc_prob="0.997">
            <gDNA_intron_boundary i_start="17714" i_stop="17793" i_length="80"/>
          </intron>
          <exon e_serial="8" e_score="1.000">
            <gDNA_exon_boundary e_start="17794" e_stop="17952" e_length="159"/>
          </exon>
          <intron i_serial="8" don_prob="0.934" acc_prob="0.999">
            <gDNA_intron_boundary i_start="17953" i_stop="18175" i_length="223"/>
          </intron>
          <exon e_serial="9" e_score="1.000">
            <gDNA_exon_boundary e_start="18176" e_stop="18337" e_length="162"/>
          </exon>
          <intron i_serial="9" don_prob="0.000" acc_prob="0.000">
            <gDNA_intron_boundary i_start="18338" i_stop="18522" i_length="185"/>
          </intron>
          <exon e_serial="10" e_score="0.857">
            <gDNA_exon_boundary e_start="18523" e_stop="18536" e_length="14"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="14732" stop="15179"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E390600" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="14733" stop="15182"/>
              <exon start="16380" stop="16441"/>
              <exon start="16814" stop="16957"/>
              <exon start="17056" stop="17104"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E334497" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="14733" stop="15182"/>
              <exon start="16380" stop="16399"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E284193" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="14764" stop="15182"/>
              <exon start="16380" stop="16441"/>
              <exon start="16814" stop="16919"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E476672" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="14766" stop="15182"/>
              <exon start="16380" stop="16408"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E404588" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="14925" stop="15182"/>
              <exon start="16380" stop="16441"/>
              <exon start="16814" stop="16957"/>
              <exon start="17056" stop="17104"/>
              <exon start="17189" stop="17223"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E725560" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="14927" stop="15182"/>
              <exon start="16380" stop="16441"/>
              <exon start="16814" stop="16957"/>
              <exon start="17056" stop="17104"/>
              <exon start="17189" stop="17305"/>
              <exon start="17391" stop="17400"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E395231" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="14928" stop="15182"/>
              <exon start="16380" stop="16441"/>
              <exon start="16814" stop="16957"/>
              <exon start="17056" stop="17104"/>
              <exon start="17189" stop="17305"/>
              <exon start="17391" stop="17530"/>
              <exon start="17608" stop="17692"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E731619" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="14928" stop="15182"/>
              <exon start="16380" stop="16441"/>
              <exon start="16814" stop="16957"/>
              <exon start="17056" stop="17104"/>
              <exon start="17189" stop="17305"/>
              <exon start="17391" stop="17530"/>
              <exon start="17608" stop="17646"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E731699" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="14928" stop="15182"/>
              <exon start="16380" stop="16441"/>
              <exon start="16814" stop="16957"/>
              <exon start="17056" stop="17104"/>
              <exon start="17189" stop="17305"/>
              <exon start="17391" stop="17530"/>
              <exon start="17608" stop="17629"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E727952" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="14929" stop="15182"/>
              <exon start="16380" stop="16441"/>
              <exon start="16814" stop="16957"/>
              <exon start="17056" stop="17104"/>
              <exon start="17189" stop="17305"/>
              <exon start="17391" stop="17530"/>
              <exon start="17608" stop="17613"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E728192" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="14929" stop="15182"/>
              <exon start="16380" stop="16441"/>
              <exon start="16814" stop="16957"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E295625" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="14930" stop="15182"/>
              <exon start="16380" stop="16441"/>
              <exon start="16814" stop="16957"/>
              <exon start="17056" stop="17104"/>
              <exon start="17189" stop="17305"/>
              <exon start="17391" stop="17530"/>
              <exon start="17608" stop="17702"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E740437" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="14930" stop="15182"/>
              <exon start="16380" stop="16441"/>
              <exon start="16814" stop="16957"/>
              <exon start="17056" stop="17104"/>
              <exon start="17189" stop="17305"/>
              <exon start="17391" stop="17530"/>
              <exon start="17608" stop="17622"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E731133" strand="+"/>
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          <PGS_line>
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          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="15039" stop="15182"/>
              <exon start="16380" stop="16441"/>
              <exon start="16814" stop="16957"/>
              <exon start="17056" stop="17104"/>
              <exon start="17189" stop="17305"/>
              <exon start="17391" stop="17441"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E365447" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="15064" stop="15182"/>
              <exon start="16380" stop="16441"/>
              <exon start="16814" stop="16957"/>
              <exon start="17056" stop="17104"/>
              <exon start="17189" stop="17305"/>
              <exon start="17391" stop="17530"/>
              <exon start="17608" stop="17713"/>
              <exon start="17794" stop="17813"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E740848" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="15067" stop="15182"/>
              <exon start="16380" stop="16441"/>
              <exon start="16814" stop="16957"/>
              <exon start="17056" stop="17104"/>
              <exon start="17189" stop="17305"/>
              <exon start="17391" stop="17530"/>
              <exon start="17608" stop="17713"/>
              <exon start="17794" stop="17904"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E738930" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="15074" stop="15182"/>
              <exon start="16380" stop="16441"/>
              <exon start="16814" stop="16957"/>
              <exon start="17056" stop="17104"/>
              <exon start="17189" stop="17305"/>
              <exon start="17391" stop="17530"/>
              <exon start="17608" stop="17713"/>
              <exon start="17794" stop="17895"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E730331" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="15108" stop="15182"/>
              <exon start="16380" stop="16441"/>
              <exon start="16814" stop="16957"/>
              <exon start="17056" stop="17104"/>
              <exon start="17189" stop="17305"/>
              <exon start="17391" stop="17458"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E726082" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="15120" stop="15182"/>
              <exon start="16380" stop="16441"/>
              <exon start="16814" stop="16957"/>
              <exon start="17056" stop="17104"/>
              <exon start="17189" stop="17305"/>
              <exon start="17391" stop="17530"/>
              <exon start="17608" stop="17644"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E296757" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="15130" stop="15182"/>
              <exon start="16380" stop="16441"/>
              <exon start="16814" stop="16957"/>
              <exon start="17056" stop="17104"/>
              <exon start="17189" stop="17305"/>
              <exon start="17391" stop="17530"/>
              <exon start="17608" stop="17713"/>
              <exon start="17794" stop="17814"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E727700" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="15132" stop="15182"/>
              <exon start="16380" stop="16441"/>
              <exon start="16814" stop="16957"/>
              <exon start="17056" stop="17104"/>
              <exon start="17189" stop="17305"/>
              <exon start="17391" stop="17515"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E294181" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="15132" stop="15182"/>
              <exon start="16380" stop="16441"/>
              <exon start="16814" stop="16957"/>
              <exon start="17056" stop="17104"/>
              <exon start="17189" stop="17305"/>
              <exon start="17391" stop="17507"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E296748" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="15132" stop="15182"/>
              <exon start="16380" stop="16441"/>
              <exon start="16814" stop="16957"/>
              <exon start="17056" stop="17104"/>
              <exon start="17189" stop="17305"/>
              <exon start="17391" stop="17465"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E299392" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="15147" stop="15182"/>
              <exon start="16380" stop="16441"/>
              <exon start="16814" stop="16957"/>
              <exon start="17056" stop="17104"/>
              <exon start="17189" stop="17305"/>
              <exon start="17391" stop="17516"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E283453" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="15161" stop="15182"/>
              <exon start="16380" stop="16441"/>
              <exon start="16814" stop="16957"/>
              <exon start="17056" stop="17104"/>
              <exon start="17189" stop="17305"/>
              <exon start="17391" stop="17530"/>
              <exon start="17608" stop="17713"/>
              <exon start="17794" stop="17858"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E372119" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="15166" stop="15182"/>
              <exon start="16380" stop="16441"/>
              <exon start="16814" stop="16957"/>
              <exon start="17056" stop="17104"/>
              <exon start="17189" stop="17305"/>
              <exon start="17391" stop="17515"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E366716" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="16380" stop="16441"/>
              <exon start="16814" stop="16957"/>
              <exon start="17056" stop="17104"/>
              <exon start="17189" stop="17305"/>
              <exon start="17391" stop="17454"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E282909" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="16380" stop="16441"/>
              <exon start="16814" stop="16957"/>
              <exon start="17056" stop="17104"/>
              <exon start="17189" stop="17305"/>
              <exon start="17391" stop="17426"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E278884" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="16380" stop="16441"/>
              <exon start="16814" stop="16957"/>
              <exon start="17056" stop="17064"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E289724" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="16383" stop="16441"/>
              <exon start="16814" stop="16957"/>
              <exon start="17056" stop="17063"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E471224" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="16397" stop="16441"/>
              <exon start="16814" stop="16957"/>
              <exon start="17056" stop="17104"/>
              <exon start="17189" stop="17305"/>
              <exon start="17391" stop="17486"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E278996" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="16814" stop="16957"/>
              <exon start="17056" stop="17104"/>
              <exon start="17189" stop="17200"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E278639" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="16847" stop="16957"/>
              <exon start="17056" stop="17104"/>
              <exon start="17189" stop="17218"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E298503" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="16892" stop="16957"/>
              <exon start="17056" stop="17104"/>
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              <exon start="17391" stop="17530"/>
              <exon start="17608" stop="17699"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E475944" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="16896" stop="16957"/>
              <exon start="17056" stop="17104"/>
              <exon start="17189" stop="17305"/>
              <exon start="17391" stop="17530"/>
              <exon start="17608" stop="17713"/>
              <exon start="17794" stop="17893"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E295257" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="16896" stop="16957"/>
              <exon start="17056" stop="17104"/>
              <exon start="17189" stop="17305"/>
              <exon start="17391" stop="17530"/>
              <exon start="17608" stop="17713"/>
              <exon start="17794" stop="17818"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E296160" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="16929" stop="16957"/>
              <exon start="17056" stop="17104"/>
              <exon start="17189" stop="17305"/>
              <exon start="17391" stop="17530"/>
              <exon start="17608" stop="17713"/>
              <exon start="17794" stop="17926"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E283889" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="16934" stop="16957"/>
              <exon start="17056" stop="17104"/>
              <exon start="17189" stop="17305"/>
              <exon start="17391" stop="17530"/>
              <exon start="17608" stop="17713"/>
              <exon start="17794" stop="17874"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E298369" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="17059" stop="17104"/>
              <exon start="17189" stop="17305"/>
              <exon start="17391" stop="17530"/>
              <exon start="17608" stop="17703"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E289687" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="17095" stop="17104"/>
              <exon start="17189" stop="17305"/>
              <exon start="17391" stop="17530"/>
              <exon start="17608" stop="17713"/>
              <exon start="17794" stop="17952"/>
              <exon start="18176" stop="18328"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E732335" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="17194" stop="17305"/>
              <exon start="17391" stop="17530"/>
              <exon start="17608" stop="17713"/>
              <exon start="17794" stop="17831"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E289789" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="17199" stop="17305"/>
              <exon start="17391" stop="17530"/>
              <exon start="17608" stop="17713"/>
              <exon start="17794" stop="17873"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E278109" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="17215" stop="17305"/>
              <exon start="17391" stop="17528"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E290692" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="17240" stop="17305"/>
              <exon start="17391" stop="17530"/>
              <exon start="17608" stop="17713"/>
              <exon start="17794" stop="17924"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E278631" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="17397" stop="17530"/>
              <exon start="17608" stop="17713"/>
              <exon start="17794" stop="17932"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E291385" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="17447" stop="17530"/>
              <exon start="17608" stop="17713"/>
              <exon start="17794" stop="17952"/>
              <exon start="18176" stop="18337"/>
              <exon start="18523" stop="18536"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E731998" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="17496" stop="17530"/>
              <exon start="17608" stop="17713"/>
              <exon start="17794" stop="17952"/>
              <exon start="18176" stop="18328"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E732225" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="4" AGS_serial="8" gDNA_strand="+"/>
          <translation>
            <gDNA_template>TTGAAATGTAAGGTTCTTGGCTTCTTAGCCATATGATATTAAGGCAAAAGTAAGATACAACATTGAATCTCCAACGTACAAACCTCATCTACAATGGATTGAAGCTCTCATTTGCTTAGCCATCACTTTCAACATTGTCTATTGGATTGGTTATATGTAAGAGTTCAAAAGCAGCAATAATCAAGAACACATCACTAGCTATACTATTACTAGTTAGTAACAAAGTAGTATAAAGGGCAAGCAAAAGCTAAAGGAAGCTCATTGAGAAATGTCAACTGCTTCCATTAACAATTGCCTTACTCTCTCCCCTGCTCAAGCTTCCCTTAAGAAACCTACTCGTCCCGTTGCCTTCGCAAGGCTTGGCAACTCTTCTTCTTCTTCTTCTATTCCAAGTCTCATCAGAAACGAGCCCGTCTTTGCTGCCCCTACTCCCATCATCAACCCCATTGTG : AGAGAAGAAATGGCAAAAGAATCCTACGATCAAGCCATTGCTGCACTCGAGAAACTCCTCAG : CGAGAAAGCAGAACTTGGACCAGTTGCTGCAGCAAGAGTTGACCAGATCACTGCTGAATTGAAATCAGCAGACGGCGGCAAGGCATTCGACCCTGTTGAGCACATGAAAGCTGGCTTTATTCATTTCAAGACTGAGAAATATGA : CACAAACCCAGCCTTATATGGTGAGCTAGCAAAGGGCCAGAGCCCTAAG : TTCATGGTTTTCGCGTGCTCTGACTCACGAGTCTGCCCATCCCATGTCCTCAACTTCCAACCTGGTGAGGCATTCATGGTTCGTAACATCGCCAACATGGTCCCTGCTTATGACAAG : GTCAGGTACTCTGGAGTAGGAGCAGCCATTGAATACGCCGTTCTTCATCTTAAGGTGGAGAACATCGTTGTCATTGGCCACAGTGCTTGTGGAGGTATCAAAGGTCTCATGTCACTACCTGAAGATGGTAGTGAATCAAC : TGCCTTTATTGAGGATTGGGTAAAAATTTGTTTACCTGCCAAGGCAAAGGTTCTGGCCGATCACGGAGGGAAAGAATTTGCACATCAATGCACAGCTTGTGAGAAG : GAAGCTGTGAACGTTTCACTTGGAAATCTGCTTACGTATCCATTCGTGAGAGAAGGATTGGTGAAGAAAACATTGGCATTGAAGGGAGGTTACTATGATTTCGTGAAGGGTGGATTTGAGCTGTGGGGACTTGAGTTCGGTCTTTCTCCTCCTCTTTCC : GTAAAAGATGTGGCCAGTATACTGCACTGGAAGCTCATGTAGAGACAGAGAGATCGTCAAGCAACAAGAGGATTCCCAGATTTAATCTGTTATTCTTGCTCATGTAGACCAAAAATTGGCCATAATAATCTACAAACACTCTTTTCGGCTACAATTATACTA : AAAAAAAAAAGAAG</gDNA_template>
            <first_frame> L  K  C  K  V  L  G  F  L  A  I  *  Y  *  G  K  S  K  I  Q  H  *  I  S  N  V  Q  T  S  S  T  M  D  *  S  S  H  L  L  S  H  H  F  Q  H  C  L  L  D  W  L  Y  V  R  V  Q  K  Q  Q  *  S  R  T  H  H  *  L  Y  Y  Y  *  L  V  T  K  *  Y  K  G  Q  A  K  A  K  G  S  S  L  R  N  V  N  C  F  H  *  Q  L  P  Y  S  L  P  C  S  S  F  P  *  E  T  Y  S  S  R  C  L  R  K  A  W  Q  L  F  F  F  F  F  Y  S  K  S  H  Q  K  R  A  R  L  C  C  P  Y  S  H  H  Q  P  H  C   : E  R  R  N  G  K  R  I  L  R  S  S  H  C  C  T  R  E  T  P  Q  :  R  E  S  R  T  W  T  S  C  C  S  K  S  *  P  D  H  C  *  I  E  I  S  R  R  R  Q  G  I  R  P  C  *  A  H  E  S  W  L  Y  S  F  Q  D  *  E  I  *  :  H  K  P  S  L  I  W  *  A  S  K  G  P  E  P  *   : V  H  G  F  R  V  L  *  L  T  S  L  P  I  P  C  P  Q  L  P  T  W  *  G  I  H  G  S  *  H  R  Q  H  G  P  C  L  *  Q   : G  Q  V  L  W  S  R  S  S  H  *  I  R  R  S  S  S  *  G  G  E  H  R  C  H  W  P  Q  C  L  W  R  Y  Q  R  S  H  V  T  T  *  R  W  *  *  I  N  :  C  L  Y  *  G  L  G  K  N  L  F  T  C  Q  G  K  G  S  G  R  S  R  R  E  R  I  C  T  S  M  H  S  L  *  E   : G  S  C  E  R  F  T  W  K  S  A  Y  V  S  I  R  E  R  R  I  G  E  E  N  I  G  I  E  G  R  L  L  *  F  R  E  G  W  I  *  A  V  G  T  *  V  R  S  F  S  S  S  F   : R  K  R  C  G  Q  Y  T  A  L  E  A  H  V  E  T  E  R  S  S  S  N  K  R  I  P  R  F  N  L  L  F  L  L  M  *  T  K  N  W  P  *  *  S  T  N  T  L  F  G  Y  N  Y  T   : K  K  K  K  K </first_frame>
            <second_frame>  *  N  V  R  F  L  A  S  *  P  Y  D  I  K  A  K  V  R  Y  N  I  E  S  P  T  Y  K  P  H  L  Q  W  I  E  A  L  I  C  L  A  I  T  F  N  I  V  Y  W  I  G  Y  M  *  E  F  K  S  S  N  N  Q  E  H  I  T  S  Y  T  I  T  S  *  *  Q  S  S  I  K  G  K  Q  K  L  K  E  A  H  *  E  M  S  T  A  S  I  N  N  C  L  T  L  S  P  A  Q  A  S  L  K  K  P  T  R  P  V  A  F  A  R  L  G  N  S  S  S  S  S  S  I  P  S  L  I  R  N  E  P  V  F  A  A  P  T  P  I  I  N  P  I  V  :  R  E  E  M  A  K  E  S  Y  D  Q  A  I  A  A  L  E  K  L  L  S :   E  K  A  E  L  G  P  V  A  A  A  R  V  D  Q  I  T  A  E  L  K  S  A  D  G  G  K  A  F  D  P  V  E  H  M  K  A  G  F  I  H  F  K  T  E  K  Y  D :   T  N  P  A  L  Y  G  E  L  A  K  G  Q  S  P  K  :  F  M  V  F  A  C  S  D  S  R  V  C  P  S  H  V  L  N  F  Q  P  G  E  A  F  M  V  R  N  I  A  N  M  V  P  A  Y  D  K  :  V  R  Y  S  G  V  G  A  A  I  E  Y  A  V  L  H  L  K  V  E  N  I  V  V  I  G  H  S  A  C  G  G  I  K  G  L  M  S  L  P  E  D  G  S  E  S  T :   A  F  I  E  D  W  V  K  I  C  L  P  A  K  A  K  V  L  A  D  H  G  G  K  E  F  A  H  Q  C  T  A  C  E  K  :  E  A  V  N  V  S  L  G  N  L  L  T  Y  P  F  V  R  E  G  L  V  K  K  T  L  A  L  K  G  G  Y  Y  D  F  V  K  G  G  F  E  L  W  G  L  E  F  G  L  S  P  P  L  S  :  V  K  D  V  A  S  I  L  H  W  K  L  M  *  R  Q  R  D  R  Q  A  T  R  G  F  P  D  L  I  C  Y  S  C  S  C  R  P  K  I  G  H  N  N  L  Q  T  L  F  S  A  T  I  I  L  :  K  K  K  R   </second_frame>
            <third_frame>   E  M  *  G  S  W  L  L  S  H  M  I  L  R  Q  K  *  D  T  T  L  N  L  Q  R  T  N  L  I  Y  N  G  L  K  L  S  F  A  *  P  S  L  S  T  L  S  I  G  L  V  I  C  K  S  S  K  A  A  I  I  K  N  T  S  L  A  I  L  L  L  V  S  N  K  V  V  *  R  A  S  K  S  *  R  K  L  I  E  K  C  Q  L  L  P  L  T  I  A  L  L  S  P  L  L  K  L  P  L  R  N  L  L  V  P  L  P  S  Q  G  L  A  T  L  L  L  L  L  L  F  Q  V  S  S  E  T  S  P  S  L  L  P  L  L  P  S  S  T  P  L  * :   E  K  K  W  Q  K  N  P  T  I  K  P  L  L  H  S  R  N  S  S   : A  R  K  Q  N  L  D  Q  L  L  Q  Q  E  L  T  R  S  L  L  N  *  N  Q  Q  T  A  A  R  H  S  T  L  L  S  T  *  K  L  A  L  F  I  S  R  L  R  N  M   : T  Q  T  Q  P  Y  M  V  S  *  Q  R  A  R  A  L  S :   S  W  F  S  R  A  L  T  H  E  S  A  H  P  M  S  S  T  S  N  L  V  R  H  S  W  F  V  T  S  P  T  W  S  L  L  M  T  R :   S  G  T  L  E  *  E  Q  P  L  N  T  P  F  F  I  L  R  W  R  T  S  L  S  L  A  T  V  L  V  E  V  S  K  V  S  C  H  Y  L  K  M  V  V  N  Q   : L  P  L  L  R  I  G  *  K  F  V  Y  L  P  R  Q  R  F  W  P  I  T  E  G  K  N  L  H  I  N  A  Q  L  V  R  R :   K  L  *  T  F  H  L  E  I  C  L  R  I  H  S  *  E  K  D  W  *  R  K  H  W  H  *  R  E  V  T  M  I  S  *  R  V  D  L  S  C  G  D  L  S  S  V  F  L  L  L  F  P :   *  K  M  W  P  V  Y  C  T  G  S  S  C  R  D  R  E  I  V  K  Q  Q  E  D  S  Q  I  *  S  V  I  L  A  H  V  D  Q  K  L  A  I  I  I  Y  K  H  S  F  R  L  Q  L  Y  * :   K  K  K  E  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02HBa0236E02.1" strand="+"/>
                <serials PGL_serial="4" AGS_serial="8" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="14997" stop="15182"/>
                    <exon start="16380" stop="16441"/>
                    <exon start="16814" stop="16957"/>
                    <exon start="17056" stop="17104"/>
                    <exon start="17189" stop="17305"/>
                    <exon start="17391" stop="17530"/>
                    <exon start="17608" stop="17713"/>
                    <exon start="17794" stop="17952"/>
                    <exon start="18176" stop="18217"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>1002</number_coding_nucleotides>
                  <number_encoded_amino_acids>334</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>EMSTASINNCLTLSPAQASLKKPTRPVAFARLGNSSSSSSIPSLIRNEPVFAAPTPIINPIVREEMAKESYDQAIAALEKLLSEKAELGPVAAARVDQITAELKSADGGKAFDPVEHMKAGFIHFKTEKYDTNPALYGELAKGQSPKFMVFACSDSRVCPSHVLNFQPGEAFMVRNIANMVPAYDKVRYSGVGAAIEYAVLHLKVENIVVIGHSACGGIKGLMSLPEDGSESTAFIEDWVKICLPAKAKVLADHGGKEFAHQCTACEKEAVNVSLGNLLTYPFVREGLVKKTLALKGGYYDFVKGGFELWGLEFGLSPPLSVKDVASILHWKLM*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="9">
          <exon_coordinates>
            <exon e_start="14732" e_stop="15182"/>
            <exon e_start="16380" e_stop="16441"/>
            <exon e_start="16814" e_stop="16957"/>
            <exon e_start="17056" e_stop="17104"/>
            <exon e_start="17189" e_stop="17305"/>
            <exon e_start="17391" e_stop="17530"/>
            <exon e_start="17608" e_stop="17713"/>
            <exon e_start="17794" e_stop="17927"/>
            <exon e_start="18176" e_stop="18266"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="1.000" acc_prob="0.971" e_score="1.000"/>
          <exon-intron don_prob="0.999" acc_prob="1.000" e_score="1.000"/>
          <exon-intron don_prob="0.999" acc_prob="0.999" e_score="1.000"/>
          <exon-intron don_prob="1.000" acc_prob="0.961" e_score="1.000"/>
          <exon-intron don_prob="0.999" acc_prob="0.979" e_score="1.000"/>
          <exon-intron don_prob="0.999" acc_prob="0.948" e_score="1.000"/>
          <exon-intron don_prob="1.000" acc_prob="0.997" e_score="1.000"/>
          <exon-intron don_prob="0.000" acc_prob="0.999" e_score="1.000"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="14732" e_stop="15182" e_length="451"/>
          </exon>
          <intron i_serial="1" don_prob="1.000" acc_prob="0.971">
            <gDNA_intron_boundary i_start="15183" i_stop="16379" i_length="1197"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="16380" e_stop="16441" e_length="62"/>
          </exon>
          <intron i_serial="2" don_prob="0.999" acc_prob="1.000">
            <gDNA_intron_boundary i_start="16442" i_stop="16813" i_length="372"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="16814" e_stop="16957" e_length="144"/>
          </exon>
          <intron i_serial="3" don_prob="0.999" acc_prob="0.999">
            <gDNA_intron_boundary i_start="16958" i_stop="17055" i_length="98"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="17056" e_stop="17104" e_length="49"/>
          </exon>
          <intron i_serial="4" don_prob="1.000" acc_prob="0.961">
            <gDNA_intron_boundary i_start="17105" i_stop="17188" i_length="84"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="17189" e_stop="17305" e_length="117"/>
          </exon>
          <intron i_serial="5" don_prob="0.999" acc_prob="0.979">
            <gDNA_intron_boundary i_start="17306" i_stop="17390" i_length="85"/>
          </intron>
          <exon e_serial="6" e_score="1.000">
            <gDNA_exon_boundary e_start="17391" e_stop="17530" e_length="140"/>
          </exon>
          <intron i_serial="6" don_prob="0.999" acc_prob="0.948">
            <gDNA_intron_boundary i_start="17531" i_stop="17607" i_length="77"/>
          </intron>
          <exon e_serial="7" e_score="1.000">
            <gDNA_exon_boundary e_start="17608" e_stop="17713" e_length="106"/>
          </exon>
          <intron i_serial="7" don_prob="1.000" acc_prob="0.997">
            <gDNA_intron_boundary i_start="17714" i_stop="17793" i_length="80"/>
          </intron>
          <exon e_serial="8" e_score="1.000">
            <gDNA_exon_boundary e_start="17794" e_stop="17927" e_length="134"/>
          </exon>
          <intron i_serial="8" don_prob="0.000" acc_prob="0.999">
            <gDNA_intron_boundary i_start="17928" i_stop="18175" i_length="248"/>
          </intron>
          <exon e_serial="9" e_score="1.000">
            <gDNA_exon_boundary e_start="18176" e_stop="18266" e_length="91"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="14732" stop="15179"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E390600" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="14733" stop="15182"/>
              <exon start="16380" stop="16441"/>
              <exon start="16814" stop="16957"/>
              <exon start="17056" stop="17104"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E334497" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="14733" stop="15182"/>
              <exon start="16380" stop="16399"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E284193" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="14764" stop="15182"/>
              <exon start="16380" stop="16441"/>
              <exon start="16814" stop="16919"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E476672" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="14766" stop="15182"/>
              <exon start="16380" stop="16408"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E404588" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="14925" stop="15182"/>
              <exon start="16380" stop="16441"/>
              <exon start="16814" stop="16957"/>
              <exon start="17056" stop="17104"/>
              <exon start="17189" stop="17223"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E725560" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="14927" stop="15182"/>
              <exon start="16380" stop="16441"/>
              <exon start="16814" stop="16957"/>
              <exon start="17056" stop="17104"/>
              <exon start="17189" stop="17305"/>
              <exon start="17391" stop="17400"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E395231" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="14928" stop="15182"/>
              <exon start="16380" stop="16441"/>
              <exon start="16814" stop="16957"/>
              <exon start="17056" stop="17104"/>
              <exon start="17189" stop="17305"/>
              <exon start="17391" stop="17530"/>
              <exon start="17608" stop="17692"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E731619" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="14928" stop="15182"/>
              <exon start="16380" stop="16441"/>
              <exon start="16814" stop="16957"/>
              <exon start="17056" stop="17104"/>
              <exon start="17189" stop="17305"/>
              <exon start="17391" stop="17530"/>
              <exon start="17608" stop="17646"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E731699" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="14928" stop="15182"/>
              <exon start="16380" stop="16441"/>
              <exon start="16814" stop="16957"/>
              <exon start="17056" stop="17104"/>
              <exon start="17189" stop="17305"/>
              <exon start="17391" stop="17530"/>
              <exon start="17608" stop="17629"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E727952" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="14929" stop="15182"/>
              <exon start="16380" stop="16441"/>
              <exon start="16814" stop="16957"/>
              <exon start="17056" stop="17104"/>
              <exon start="17189" stop="17305"/>
              <exon start="17391" stop="17530"/>
              <exon start="17608" stop="17613"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E728192" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="14929" stop="15182"/>
              <exon start="16380" stop="16441"/>
              <exon start="16814" stop="16957"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E295625" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="14930" stop="15182"/>
              <exon start="16380" stop="16441"/>
              <exon start="16814" stop="16957"/>
              <exon start="17056" stop="17104"/>
              <exon start="17189" stop="17305"/>
              <exon start="17391" stop="17530"/>
              <exon start="17608" stop="17702"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E740437" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="14930" stop="15182"/>
              <exon start="16380" stop="16441"/>
              <exon start="16814" stop="16957"/>
              <exon start="17056" stop="17104"/>
              <exon start="17189" stop="17305"/>
              <exon start="17391" stop="17530"/>
              <exon start="17608" stop="17622"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E731133" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="14930" stop="15182"/>
              <exon start="16380" stop="16441"/>
              <exon start="16814" stop="16957"/>
              <exon start="17056" stop="17104"/>
              <exon start="17189" stop="17305"/>
              <exon start="17391" stop="17517"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E740554" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="14930" stop="15182"/>
              <exon start="16380" stop="16439"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E726334" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="14931" stop="15182"/>
              <exon start="16380" stop="16441"/>
              <exon start="16814" stop="16957"/>
              <exon start="17056" stop="17104"/>
              <exon start="17189" stop="17235"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E355919" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="14932" stop="15182"/>
              <exon start="16380" stop="16441"/>
              <exon start="16814" stop="16957"/>
              <exon start="17056" stop="17062"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E358187" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="14933" stop="15182"/>
              <exon start="16380" stop="16441"/>
              <exon start="16814" stop="16957"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E402664" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="14934" stop="15182"/>
              <exon start="16380" stop="16441"/>
              <exon start="16814" stop="16957"/>
              <exon start="17056" stop="17104"/>
              <exon start="17189" stop="17305"/>
              <exon start="17391" stop="17530"/>
              <exon start="17608" stop="17713"/>
              <exon start="17794" stop="17827"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E739401" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="14934" stop="15182"/>
              <exon start="16380" stop="16441"/>
              <exon start="16814" stop="16957"/>
              <exon start="17056" stop="17104"/>
              <exon start="17189" stop="17305"/>
              <exon start="17391" stop="17530"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E728472" strand="+"/>
          </PGS_line>
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              <exon start="17189" stop="17305"/>
              <exon start="17391" stop="17530"/>
              <exon start="17608" stop="17644"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E296757" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="15130" stop="15182"/>
              <exon start="16380" stop="16441"/>
              <exon start="16814" stop="16957"/>
              <exon start="17056" stop="17104"/>
              <exon start="17189" stop="17305"/>
              <exon start="17391" stop="17530"/>
              <exon start="17608" stop="17713"/>
              <exon start="17794" stop="17814"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E727700" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="15132" stop="15182"/>
              <exon start="16380" stop="16441"/>
              <exon start="16814" stop="16957"/>
              <exon start="17056" stop="17104"/>
              <exon start="17189" stop="17305"/>
              <exon start="17391" stop="17515"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E294181" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="15132" stop="15182"/>
              <exon start="16380" stop="16441"/>
              <exon start="16814" stop="16957"/>
              <exon start="17056" stop="17104"/>
              <exon start="17189" stop="17305"/>
              <exon start="17391" stop="17507"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E296748" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="15132" stop="15182"/>
              <exon start="16380" stop="16441"/>
              <exon start="16814" stop="16957"/>
              <exon start="17056" stop="17104"/>
              <exon start="17189" stop="17305"/>
              <exon start="17391" stop="17465"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E299392" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="15147" stop="15182"/>
              <exon start="16380" stop="16441"/>
              <exon start="16814" stop="16957"/>
              <exon start="17056" stop="17104"/>
              <exon start="17189" stop="17305"/>
              <exon start="17391" stop="17516"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E283453" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="15161" stop="15182"/>
              <exon start="16380" stop="16441"/>
              <exon start="16814" stop="16957"/>
              <exon start="17056" stop="17104"/>
              <exon start="17189" stop="17305"/>
              <exon start="17391" stop="17530"/>
              <exon start="17608" stop="17713"/>
              <exon start="17794" stop="17858"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E372119" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="15166" stop="15182"/>
              <exon start="16380" stop="16441"/>
              <exon start="16814" stop="16957"/>
              <exon start="17056" stop="17104"/>
              <exon start="17189" stop="17305"/>
              <exon start="17391" stop="17515"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E366716" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="16380" stop="16441"/>
              <exon start="16814" stop="16957"/>
              <exon start="17056" stop="17104"/>
              <exon start="17189" stop="17305"/>
              <exon start="17391" stop="17454"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E282909" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="16380" stop="16441"/>
              <exon start="16814" stop="16957"/>
              <exon start="17056" stop="17104"/>
              <exon start="17189" stop="17305"/>
              <exon start="17391" stop="17426"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E278884" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="16380" stop="16441"/>
              <exon start="16814" stop="16957"/>
              <exon start="17056" stop="17064"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E289724" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="16383" stop="16441"/>
              <exon start="16814" stop="16957"/>
              <exon start="17056" stop="17063"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E471224" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="16397" stop="16441"/>
              <exon start="16814" stop="16957"/>
              <exon start="17056" stop="17104"/>
              <exon start="17189" stop="17305"/>
              <exon start="17391" stop="17486"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E278996" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="16814" stop="16957"/>
              <exon start="17056" stop="17104"/>
              <exon start="17189" stop="17200"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E278639" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="16847" stop="16957"/>
              <exon start="17056" stop="17104"/>
              <exon start="17189" stop="17218"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E298503" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="16892" stop="16957"/>
              <exon start="17056" stop="17104"/>
              <exon start="17189" stop="17305"/>
              <exon start="17391" stop="17530"/>
              <exon start="17608" stop="17699"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E475944" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="16896" stop="16957"/>
              <exon start="17056" stop="17104"/>
              <exon start="17189" stop="17305"/>
              <exon start="17391" stop="17530"/>
              <exon start="17608" stop="17713"/>
              <exon start="17794" stop="17893"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E295257" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="16896" stop="16957"/>
              <exon start="17056" stop="17104"/>
              <exon start="17189" stop="17305"/>
              <exon start="17391" stop="17530"/>
              <exon start="17608" stop="17713"/>
              <exon start="17794" stop="17818"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E296160" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="16929" stop="16957"/>
              <exon start="17056" stop="17104"/>
              <exon start="17189" stop="17305"/>
              <exon start="17391" stop="17530"/>
              <exon start="17608" stop="17713"/>
              <exon start="17794" stop="17926"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E283889" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="16934" stop="16957"/>
              <exon start="17056" stop="17104"/>
              <exon start="17189" stop="17305"/>
              <exon start="17391" stop="17530"/>
              <exon start="17608" stop="17713"/>
              <exon start="17794" stop="17874"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E298369" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="17059" stop="17104"/>
              <exon start="17189" stop="17305"/>
              <exon start="17391" stop="17530"/>
              <exon start="17608" stop="17703"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E289687" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="17194" stop="17305"/>
              <exon start="17391" stop="17530"/>
              <exon start="17608" stop="17713"/>
              <exon start="17794" stop="17831"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E289789" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="17199" stop="17305"/>
              <exon start="17391" stop="17530"/>
              <exon start="17608" stop="17713"/>
              <exon start="17794" stop="17873"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E278109" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="17215" stop="17305"/>
              <exon start="17391" stop="17528"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E290692" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="17240" stop="17305"/>
              <exon start="17391" stop="17530"/>
              <exon start="17608" stop="17713"/>
              <exon start="17794" stop="17924"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E278631" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="17704" stop="17713"/>
              <exon start="17794" stop="17927"/>
              <exon start="18176" stop="18266"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E295997" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="4" AGS_serial="9" gDNA_strand="+"/>
          <translation>
            <gDNA_template>TTGAAATGTAAGGTTCTTGGCTTCTTAGCCATATGATATTAAGGCAAAAGTAAGATACAACATTGAATCTCCAACGTACAAACCTCATCTACAATGGATTGAAGCTCTCATTTGCTTAGCCATCACTTTCAACATTGTCTATTGGATTGGTTATATGTAAGAGTTCAAAAGCAGCAATAATCAAGAACACATCACTAGCTATACTATTACTAGTTAGTAACAAAGTAGTATAAAGGGCAAGCAAAAGCTAAAGGAAGCTCATTGAGAAATGTCAACTGCTTCCATTAACAATTGCCTTACTCTCTCCCCTGCTCAAGCTTCCCTTAAGAAACCTACTCGTCCCGTTGCCTTCGCAAGGCTTGGCAACTCTTCTTCTTCTTCTTCTATTCCAAGTCTCATCAGAAACGAGCCCGTCTTTGCTGCCCCTACTCCCATCATCAACCCCATTGTG : AGAGAAGAAATGGCAAAAGAATCCTACGATCAAGCCATTGCTGCACTCGAGAAACTCCTCAG : CGAGAAAGCAGAACTTGGACCAGTTGCTGCAGCAAGAGTTGACCAGATCACTGCTGAATTGAAATCAGCAGACGGCGGCAAGGCATTCGACCCTGTTGAGCACATGAAAGCTGGCTTTATTCATTTCAAGACTGAGAAATATGA : CACAAACCCAGCCTTATATGGTGAGCTAGCAAAGGGCCAGAGCCCTAAG : TTCATGGTTTTCGCGTGCTCTGACTCACGAGTCTGCCCATCCCATGTCCTCAACTTCCAACCTGGTGAGGCATTCATGGTTCGTAACATCGCCAACATGGTCCCTGCTTATGACAAG : GTCAGGTACTCTGGAGTAGGAGCAGCCATTGAATACGCCGTTCTTCATCTTAAGGTGGAGAACATCGTTGTCATTGGCCACAGTGCTTGTGGAGGTATCAAAGGTCTCATGTCACTACCTGAAGATGGTAGTGAATCAAC : TGCCTTTATTGAGGATTGGGTAAAAATTTGTTTACCTGCCAAGGCAAAGGTTCTGGCCGATCACGGAGGGAAAGAATTTGCACATCAATGCACAGCTTGTGAGAAG : GAAGCTGTGAACGTTTCACTTGGAAATCTGCTTACGTATCCATTCGTGAGAGAAGGATTGGTGAAGAAAACATTGGCATTGAAGGGAGGTTACTATGATTTCGTGAAGGGTGGATTTGAGCTGTGGGGACTTGA : GTAAAAGATGTGGCCAGTATACTGCACTGGAAGCTCATGTAGAGACAGAGAGATCGTCAAGCAACAAGAGGATTCCCAGATTTAATCTGTT</gDNA_template>
            <first_frame> L  K  C  K  V  L  G  F  L  A  I  *  Y  *  G  K  S  K  I  Q  H  *  I  S  N  V  Q  T  S  S  T  M  D  *  S  S  H  L  L  S  H  H  F  Q  H  C  L  L  D  W  L  Y  V  R  V  Q  K  Q  Q  *  S  R  T  H  H  *  L  Y  Y  Y  *  L  V  T  K  *  Y  K  G  Q  A  K  A  K  G  S  S  L  R  N  V  N  C  F  H  *  Q  L  P  Y  S  L  P  C  S  S  F  P  *  E  T  Y  S  S  R  C  L  R  K  A  W  Q  L  F  F  F  F  F  Y  S  K  S  H  Q  K  R  A  R  L  C  C  P  Y  S  H  H  Q  P  H  C   : E  R  R  N  G  K  R  I  L  R  S  S  H  C  C  T  R  E  T  P  Q  :  R  E  S  R  T  W  T  S  C  C  S  K  S  *  P  D  H  C  *  I  E  I  S  R  R  R  Q  G  I  R  P  C  *  A  H  E  S  W  L  Y  S  F  Q  D  *  E  I  *  :  H  K  P  S  L  I  W  *  A  S  K  G  P  E  P  *   : V  H  G  F  R  V  L  *  L  T  S  L  P  I  P  C  P  Q  L  P  T  W  *  G  I  H  G  S  *  H  R  Q  H  G  P  C  L  *  Q   : G  Q  V  L  W  S  R  S  S  H  *  I  R  R  S  S  S  *  G  G  E  H  R  C  H  W  P  Q  C  L  W  R  Y  Q  R  S  H  V  T  T  *  R  W  *  *  I  N  :  C  L  Y  *  G  L  G  K  N  L  F  T  C  Q  G  K  G  S  G  R  S  R  R  E  R  I  C  T  S  M  H  S  L  *  E   : G  S  C  E  R  F  T  W  K  S  A  Y  V  S  I  R  E  R  R  I  G  E  E  N  I  G  I  E  G  R  L  L  *  F  R  E  G  W  I  *  A  V  G  T  *  :  V  K  D  V  A  S  I  L  H  W  K  L  M  *  R  Q  R  D  R  Q  A  T  R  G  F  P  D  L  I  C  </first_frame>
            <second_frame>  *  N  V  R  F  L  A  S  *  P  Y  D  I  K  A  K  V  R  Y  N  I  E  S  P  T  Y  K  P  H  L  Q  W  I  E  A  L  I  C  L  A  I  T  F  N  I  V  Y  W  I  G  Y  M  *  E  F  K  S  S  N  N  Q  E  H  I  T  S  Y  T  I  T  S  *  *  Q  S  S  I  K  G  K  Q  K  L  K  E  A  H  *  E  M  S  T  A  S  I  N  N  C  L  T  L  S  P  A  Q  A  S  L  K  K  P  T  R  P  V  A  F  A  R  L  G  N  S  S  S  S  S  S  I  P  S  L  I  R  N  E  P  V  F  A  A  P  T  P  I  I  N  P  I  V  :  R  E  E  M  A  K  E  S  Y  D  Q  A  I  A  A  L  E  K  L  L  S :   E  K  A  E  L  G  P  V  A  A  A  R  V  D  Q  I  T  A  E  L  K  S  A  D  G  G  K  A  F  D  P  V  E  H  M  K  A  G  F  I  H  F  K  T  E  K  Y  D :   T  N  P  A  L  Y  G  E  L  A  K  G  Q  S  P  K  :  F  M  V  F  A  C  S  D  S  R  V  C  P  S  H  V  L  N  F  Q  P  G  E  A  F  M  V  R  N  I  A  N  M  V  P  A  Y  D  K  :  V  R  Y  S  G  V  G  A  A  I  E  Y  A  V  L  H  L  K  V  E  N  I  V  V  I  G  H  S  A  C  G  G  I  K  G  L  M  S  L  P  E  D  G  S  E  S  T :   A  F  I  E  D  W  V  K  I  C  L  P  A  K  A  K  V  L  A  D  H  G  G  K  E  F  A  H  Q  C  T  A  C  E  K  :  E  A  V  N  V  S  L  G  N  L  L  T  Y  P  F  V  R  E  G  L  V  K  K  T  L  A  L  K  G  G  Y  Y  D  F  V  K  G  G  F  E  L  W  G  L  E :   *  K  M  W  P  V  Y  C  T  G  S  S  C  R  D  R  E  I  V  K  Q  Q  E  D  S  Q  I  *  S  V </second_frame>
            <third_frame>   E  M  *  G  S  W  L  L  S  H  M  I  L  R  Q  K  *  D  T  T  L  N  L  Q  R  T  N  L  I  Y  N  G  L  K  L  S  F  A  *  P  S  L  S  T  L  S  I  G  L  V  I  C  K  S  S  K  A  A  I  I  K  N  T  S  L  A  I  L  L  L  V  S  N  K  V  V  *  R  A  S  K  S  *  R  K  L  I  E  K  C  Q  L  L  P  L  T  I  A  L  L  S  P  L  L  K  L  P  L  R  N  L  L  V  P  L  P  S  Q  G  L  A  T  L  L  L  L  L  L  F  Q  V  S  S  E  T  S  P  S  L  L  P  L  L  P  S  S  T  P  L  * :   E  K  K  W  Q  K  N  P  T  I  K  P  L  L  H  S  R  N  S  S   : A  R  K  Q  N  L  D  Q  L  L  Q  Q  E  L  T  R  S  L  L  N  *  N  Q  Q  T  A  A  R  H  S  T  L  L  S  T  *  K  L  A  L  F  I  S  R  L  R  N  M   : T  Q  T  Q  P  Y  M  V  S  *  Q  R  A  R  A  L  S :   S  W  F  S  R  A  L  T  H  E  S  A  H  P  M  S  S  T  S  N  L  V  R  H  S  W  F  V  T  S  P  T  W  S  L  L  M  T  R :   S  G  T  L  E  *  E  Q  P  L  N  T  P  F  F  I  L  R  W  R  T  S  L  S  L  A  T  V  L  V  E  V  S  K  V  S  C  H  Y  L  K  M  V  V  N  Q   : L  P  L  L  R  I  G  *  K  F  V  Y  L  P  R  Q  R  F  W  P  I  T  E  G  K  N  L  H  I  N  A  Q  L  V  R  R :   K  L  *  T  F  H  L  E  I  C  L  R  I  H  S  *  E  K  D  W  *  R  K  H  W  H  *  R  E  V  T  M  I  S  *  R  V  D  L  S  C  G  D  L   : S  K  R  C  G  Q  Y  T  A  L  E  A  H  V  E  T  E  R  S  S  S  N  K  R  I  P  R  F  N  L   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02HBa0236E02.1" strand="+"/>
                <serials PGL_serial="4" AGS_serial="9" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="14997" stop="15182"/>
                    <exon start="16380" stop="16441"/>
                    <exon start="16814" stop="16957"/>
                    <exon start="17056" stop="17104"/>
                    <exon start="17189" stop="17305"/>
                    <exon start="17391" stop="17530"/>
                    <exon start="17608" stop="17713"/>
                    <exon start="17794" stop="17927"/>
                    <exon start="18176" stop="18179"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>939</number_coding_nucleotides>
                  <number_encoded_amino_acids>313</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>EMSTASINNCLTLSPAQASLKKPTRPVAFARLGNSSSSSSIPSLIRNEPVFAAPTPIINPIVREEMAKESYDQAIAALEKLLSEKAELGPVAAARVDQITAELKSADGGKAFDPVEHMKAGFIHFKTEKYDTNPALYGELAKGQSPKFMVFACSDSRVCPSHVLNFQPGEAFMVRNIANMVPAYDKVRYSGVGAAIEYAVLHLKVENIVVIGHSACGGIKGLMSLPEDGSESTAFIEDWVKICLPAKAKVLADHGGKEFAHQCTACEKEAVNVSLGNLLTYPFVREGLVKKTLALKGGYYDFVKGGFELWGLE*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="10">
          <exon_coordinates>
            <exon e_start="14732" e_stop="15182"/>
            <exon e_start="16380" e_stop="16441"/>
            <exon e_start="16814" e_stop="16957"/>
            <exon e_start="17056" e_stop="17104"/>
            <exon e_start="17189" e_stop="17305"/>
            <exon e_start="17391" e_stop="17517"/>
            <exon e_start="17794" e_stop="18159"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="1.000" acc_prob="0.971" e_score="1.000"/>
          <exon-intron don_prob="0.999" acc_prob="1.000" e_score="1.000"/>
          <exon-intron don_prob="0.999" acc_prob="0.999" e_score="1.000"/>
          <exon-intron don_prob="1.000" acc_prob="0.961" e_score="1.000"/>
          <exon-intron don_prob="0.999" acc_prob="0.979" e_score="1.000"/>
          <exon-intron don_prob="0.959" acc_prob="0.997" e_score="1.000"/>
          <exon-only e_score="0.967"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="14732" e_stop="15182" e_length="451"/>
          </exon>
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              <exon start="16814" stop="16834"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E365679" strand="+"/>
          </PGS_line>
          <PGS_line>
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            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E288897" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
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            <referenceDNA id="SGN-E325877" strand="+"/>
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          <PGS_line>
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            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E285248" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
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            <referenceDNA id="SGN-E359088" strand="+"/>
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          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="14970" stop="15179"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E289269" strand="+"/>
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          <PGS_line>
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            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E295189" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="14977" stop="15182"/>
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              <exon start="17189" stop="17287"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E726000" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="14977" stop="15177"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E470973" strand="+"/>
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          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="14981" stop="15182"/>
              <exon start="16380" stop="16410"/>
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            <referenceDNA id="SGN-E378229" strand="+"/>
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          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="14985" stop="15182"/>
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            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E283565" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="14985" stop="15182"/>
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            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E286453" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
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            <referenceDNA id="SGN-E475744" strand="+"/>
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          <PGS_line>
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            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E365231" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
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            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E294951" strand="+"/>
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          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="14997" stop="15182"/>
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            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E470425" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="14998" stop="15182"/>
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            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E281775" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
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            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E358258" strand="+"/>
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          <PGS_line>
            <gDNA_exon_coordinates>
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            <referenceDNA id="SGN-E293576" strand="-"/>
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          <PGS_line>
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            <referenceDNA id="SGN-E293575" strand="+"/>
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          <PGS_line>
            <gDNA_exon_coordinates>
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            <referenceDNA id="SGN-E292491" strand="+"/>
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          <PGS_line>
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            <referenceDNA id="SGN-E293347" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
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            <referenceDNA id="SGN-E290827" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="15003" stop="15182"/>
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            <referenceDNA id="SGN-E354693" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="15003" stop="15182"/>
              <exon start="16380" stop="16398"/>
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            <referenceDNA id="SGN-E358322" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="15005" stop="15182"/>
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            <referenceDNA id="SGN-E290767" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="15007" stop="15182"/>
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            <referenceDNA id="SGN-E545782" strand="+"/>
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          <PGS_line>
            <gDNA_exon_coordinates>
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            <referenceDNA id="SGN-E355635" strand="+"/>
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          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="15008" stop="15182"/>
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            <referenceDNA id="SGN-E340927" strand="+"/>
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          <PGS_line>
            <gDNA_exon_coordinates>
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            <referenceDNA id="SGN-E355616" strand="+"/>
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          <PGS_line>
            <gDNA_exon_coordinates>
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            <referenceDNA id="SGN-E726107" strand="+"/>
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          <PGS_line>
            <gDNA_exon_coordinates>
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            <referenceDNA id="SGN-E291514" strand="+"/>
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          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="15017" stop="15182"/>
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            <referenceDNA id="SGN-E279852" strand="+"/>
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          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="15020" stop="15182"/>
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            <referenceDNA id="SGN-E288399" strand="+"/>
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          <PGS_line>
            <gDNA_exon_coordinates>
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            <referenceDNA id="SGN-E473444" strand="+"/>
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          <PGS_line>
            <gDNA_exon_coordinates>
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            <referenceDNA id="SGN-E278895" strand="+"/>
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          <PGS_line>
            <gDNA_exon_coordinates>
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            <referenceDNA id="SGN-E725585" strand="+"/>
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          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="15027" stop="15182"/>
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            <referenceDNA id="SGN-E283210" strand="+"/>
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          <PGS_line>
            <gDNA_exon_coordinates>
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            <referenceDNA id="SGN-E365447" strand="+"/>
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          <PGS_line>
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            <referenceDNA id="SGN-E726082" strand="+"/>
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          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="15132" stop="15182"/>
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            <referenceDNA id="SGN-E294181" strand="+"/>
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          <PGS_line>
            <gDNA_exon_coordinates>
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            <referenceDNA id="SGN-E296748" strand="+"/>
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          <PGS_line>
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            <referenceDNA id="SGN-E299392" strand="+"/>
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          <PGS_line>
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            <referenceDNA id="SGN-E283453" strand="+"/>
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          <PGS_line>
            <gDNA_exon_coordinates>
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            <referenceDNA id="SGN-E366716" strand="+"/>
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          <PGS_line>
            <gDNA_exon_coordinates>
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            <referenceDNA id="SGN-E282909" strand="+"/>
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          <PGS_line>
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            <referenceDNA id="SGN-E278884" strand="+"/>
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          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="16380" stop="16441"/>
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            <referenceDNA id="SGN-E289724" strand="+"/>
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          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="16383" stop="16441"/>
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            <referenceDNA id="SGN-E471224" strand="+"/>
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          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="16397" stop="16441"/>
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            <referenceDNA id="SGN-E278996" strand="+"/>
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          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="16814" stop="16957"/>
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              <exon start="17189" stop="17200"/>
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            <referenceDNA id="SGN-E278639" strand="-"/>
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          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="16847" stop="16957"/>
              <exon start="17056" stop="17104"/>
              <exon start="17189" stop="17218"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E298503" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="17279" stop="17305"/>
              <exon start="17391" stop="17517"/>
              <exon start="17794" stop="17798"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E725665" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="17797" stop="18134"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E234581" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="17910" stop="18159"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E297630" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="17943" stop="18156"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E287260" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="4" AGS_serial="10" gDNA_strand="+"/>
          <translation>
            <gDNA_template>TTGAAATGTAAGGTTCTTGGCTTCTTAGCCATATGATATTAAGGCAAAAGTAAGATACAACATTGAATCTCCAACGTACAAACCTCATCTACAATGGATTGAAGCTCTCATTTGCTTAGCCATCACTTTCAACATTGTCTATTGGATTGGTTATATGTAAGAGTTCAAAAGCAGCAATAATCAAGAACACATCACTAGCTATACTATTACTAGTTAGTAACAAAGTAGTATAAAGGGCAAGCAAAAGCTAAAGGAAGCTCATTGAGAAATGTCAACTGCTTCCATTAACAATTGCCTTACTCTCTCCCCTGCTCAAGCTTCCCTTAAGAAACCTACTCGTCCCGTTGCCTTCGCAAGGCTTGGCAACTCTTCTTCTTCTTCTTCTATTCCAAGTCTCATCAGAAACGAGCCCGTCTTTGCTGCCCCTACTCCCATCATCAACCCCATTGTG : AGAGAAGAAATGGCAAAAGAATCCTACGATCAAGCCATTGCTGCACTCGAGAAACTCCTCAG : CGAGAAAGCAGAACTTGGACCAGTTGCTGCAGCAAGAGTTGACCAGATCACTGCTGAATTGAAATCAGCAGACGGCGGCAAGGCATTCGACCCTGTTGAGCACATGAAAGCTGGCTTTATTCATTTCAAGACTGAGAAATATGA : CACAAACCCAGCCTTATATGGTGAGCTAGCAAAGGGCCAGAGCCCTAAG : TTCATGGTTTTCGCGTGCTCTGACTCACGAGTCTGCCCATCCCATGTCCTCAACTTCCAACCTGGTGAGGCATTCATGGTTCGTAACATCGCCAACATGGTCCCTGCTTATGACAAG : GTCAGGTACTCTGGAGTAGGAGCAGCCATTGAATACGCCGTTCTTCATCTTAAGGTGGAGAACATCGTTGTCATTGGCCACAGTGCTTGTGGAGGTATCAAAGGTCTCATGTCACTACCTGAAGATG : GAAGCTGTGAACGTTTCACTTGGAAATCTGCTTACGTATCCATTCGTGAGAGAAGGATTGGTGAAGAAAACATTGGCATTGAAGGGAGGTTACTATGATTTCGTGAAGGGTGGATTTGAGCTGTGGGGACTTGAGTTCGGTCTTTCTCCTCCTCTTTCCGTATGAACTTAATTCAATTACCATTTGGCCCTCACAATTTCCTTCCTTTTTTTTTTTTTCGCCTGACAGTACTTTTGCTTCGCAAAATCAACTGTGTGTATGTTGTTTGTATGTATTATGTATGTATGAATCAAATATGGAAGAGCACTCGTTGTTATATTTCTGAAATAAATAAAATGGAGACTACTTTTTGTATAAATACGTTTG</gDNA_template>
            <first_frame> L  K  C  K  V  L  G  F  L  A  I  *  Y  *  G  K  S  K  I  Q  H  *  I  S  N  V  Q  T  S  S  T  M  D  *  S  S  H  L  L  S  H  H  F  Q  H  C  L  L  D  W  L  Y  V  R  V  Q  K  Q  Q  *  S  R  T  H  H  *  L  Y  Y  Y  *  L  V  T  K  *  Y  K  G  Q  A  K  A  K  G  S  S  L  R  N  V  N  C  F  H  *  Q  L  P  Y  S  L  P  C  S  S  F  P  *  E  T  Y  S  S  R  C  L  R  K  A  W  Q  L  F  F  F  F  F  Y  S  K  S  H  Q  K  R  A  R  L  C  C  P  Y  S  H  H  Q  P  H  C   : E  R  R  N  G  K  R  I  L  R  S  S  H  C  C  T  R  E  T  P  Q  :  R  E  S  R  T  W  T  S  C  C  S  K  S  *  P  D  H  C  *  I  E  I  S  R  R  R  Q  G  I  R  P  C  *  A  H  E  S  W  L  Y  S  F  Q  D  *  E  I  *  :  H  K  P  S  L  I  W  *  A  S  K  G  P  E  P  *   : V  H  G  F  R  V  L  *  L  T  S  L  P  I  P  C  P  Q  L  P  T  W  *  G  I  H  G  S  *  H  R  Q  H  G  P  C  L  *  Q   : G  Q  V  L  W  S  R  S  S  H  *  I  R  R  S  S  S  *  G  G  E  H  R  C  H  W  P  Q  C  L  W  R  Y  Q  R  S  H  V  T  T  *  R  W :   K  L  *  T  F  H  L  E  I  C  L  R  I  H  S  *  E  K  D  W  *  R  K  H  W  H  *  R  E  V  T  M  I  S  *  R  V  D  L  S  C  G  D  L  S  S  V  F  L  L  L  F  P  Y  E  L  N  S  I  T  I  W  P  S  Q  F  P  S  F  F  F  F  S  P  D  S  T  F  A  S  Q  N  Q  L  C  V  C  C  L  Y  V  L  C  M  Y  E  S  N  M  E  E  H  S  L  L  Y  F  *  N  K  *  N  G  D  Y  F  L  Y  K  Y  V   </first_frame>
            <second_frame>  *  N  V  R  F  L  A  S  *  P  Y  D  I  K  A  K  V  R  Y  N  I  E  S  P  T  Y  K  P  H  L  Q  W  I  E  A  L  I  C  L  A  I  T  F  N  I  V  Y  W  I  G  Y  M  *  E  F  K  S  S  N  N  Q  E  H  I  T  S  Y  T  I  T  S  *  *  Q  S  S  I  K  G  K  Q  K  L  K  E  A  H  *  E  M  S  T  A  S  I  N  N  C  L  T  L  S  P  A  Q  A  S  L  K  K  P  T  R  P  V  A  F  A  R  L  G  N  S  S  S  S  S  S  I  P  S  L  I  R  N  E  P  V  F  A  A  P  T  P  I  I  N  P  I  V  :  R  E  E  M  A  K  E  S  Y  D  Q  A  I  A  A  L  E  K  L  L  S :   E  K  A  E  L  G  P  V  A  A  A  R  V  D  Q  I  T  A  E  L  K  S  A  D  G  G  K  A  F  D  P  V  E  H  M  K  A  G  F  I  H  F  K  T  E  K  Y  D :   T  N  P  A  L  Y  G  E  L  A  K  G  Q  S  P  K  :  F  M  V  F  A  C  S  D  S  R  V  C  P  S  H  V  L  N  F  Q  P  G  E  A  F  M  V  R  N  I  A  N  M  V  P  A  Y  D  K  :  V  R  Y  S  G  V  G  A  A  I  E  Y  A  V  L  H  L  K  V  E  N  I  V  V  I  G  H  S  A  C  G  G  I  K  G  L  M  S  L  P  E  D   : G  S  C  E  R  F  T  W  K  S  A  Y  V  S  I  R  E  R  R  I  G  E  E  N  I  G  I  E  G  R  L  L  *  F  R  E  G  W  I  *  A  V  G  T  *  V  R  S  F  S  S  S  F  R  M  N  L  I  Q  L  P  F  G  P  H  N  F  L  P  F  F  F  F  R  L  T  V  L  L  L  R  K  I  N  C  V  Y  V  V  C  M  Y  Y  V  C  M  N  Q  I  W  K  S  T  R  C  Y  I  S  E  I  N  K  M  E  T  T  F  C  I  N  T  F  </second_frame>
            <third_frame>   E  M  *  G  S  W  L  L  S  H  M  I  L  R  Q  K  *  D  T  T  L  N  L  Q  R  T  N  L  I  Y  N  G  L  K  L  S  F  A  *  P  S  L  S  T  L  S  I  G  L  V  I  C  K  S  S  K  A  A  I  I  K  N  T  S  L  A  I  L  L  L  V  S  N  K  V  V  *  R  A  S  K  S  *  R  K  L  I  E  K  C  Q  L  L  P  L  T  I  A  L  L  S  P  L  L  K  L  P  L  R  N  L  L  V  P  L  P  S  Q  G  L  A  T  L  L  L  L  L  L  F  Q  V  S  S  E  T  S  P  S  L  L  P  L  L  P  S  S  T  P  L  * :   E  K  K  W  Q  K  N  P  T  I  K  P  L  L  H  S  R  N  S  S   : A  R  K  Q  N  L  D  Q  L  L  Q  Q  E  L  T  R  S  L  L  N  *  N  Q  Q  T  A  A  R  H  S  T  L  L  S  T  *  K  L  A  L  F  I  S  R  L  R  N  M   : T  Q  T  Q  P  Y  M  V  S  *  Q  R  A  R  A  L  S :   S  W  F  S  R  A  L  T  H  E  S  A  H  P  M  S  S  T  S  N  L  V  R  H  S  W  F  V  T  S  P  T  W  S  L  L  M  T  R :   S  G  T  L  E  *  E  Q  P  L  N  T  P  F  F  I  L  R  W  R  T  S  L  S  L  A  T  V  L  V  E  V  S  K  V  S  C  H  Y  L  K  M  :  E  A  V  N  V  S  L  G  N  L  L  T  Y  P  F  V  R  E  G  L  V  K  K  T  L  A  L  K  G  G  Y  Y  D  F  V  K  G  G  F  E  L  W  G  L  E  F  G  L  S  P  P  L  S  V  *  T  *  F  N  Y  H  L  A  L  T  I  S  F  L  F  F  F  F  A  *  Q  Y  F  C  F  A  K  S  T  V  C  M  L  F  V  C  I  M  Y  V  *  I  K  Y  G  R  A  L  V  V  I  F  L  K  *  I  K  W  R  L  L  F  V  *  I  R  L </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02HBa0236E02.1" strand="+"/>
                <serials PGL_serial="4" AGS_serial="10" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="14997" stop="15182"/>
                    <exon start="16380" stop="16441"/>
                    <exon start="16814" stop="16957"/>
                    <exon start="17056" stop="17104"/>
                    <exon start="17189" stop="17305"/>
                    <exon start="17391" stop="17517"/>
                    <exon start="17794" stop="17891"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>780</number_coding_nucleotides>
                  <number_encoded_amino_acids>260</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>EMSTASINNCLTLSPAQASLKKPTRPVAFARLGNSSSSSSIPSLIRNEPVFAAPTPIINPIVREEMAKESYDQAIAALEKLLSEKAELGPVAAARVDQITAELKSADGGKAFDPVEHMKAGFIHFKTEKYDTNPALYGELAKGQSPKFMVFACSDSRVCPSHVLNFQPGEAFMVRNIANMVPAYDKVRYSGVGAAIEYAVLHLKVENIVVIGHSACGGIKGLMSLPEDGSCERFTWKSAYVSIRERRIGEENIGIEGRLL*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C02HBa0236E02.1" strand="+"/>
                <serials PGL_serial="4" AGS_serial="10" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="17928" stop="18158"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>231</number_coding_nucleotides>
                  <number_encoded_amino_acids>77</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>VRSFSSSFRMNLIQLPFGPHNFLPFFFFRLTVLLLRKINCVYVVCMYYVCMNQIWKSTRCYISEINKMETTFCINTF</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="11">
          <exon_coordinates>
            <exon e_start="14732" e_stop="15182"/>
            <exon e_start="16371" e_stop="16441"/>
            <exon e_start="16814" e_stop="16957"/>
            <exon e_start="17056" e_stop="17104"/>
            <exon e_start="17189" e_stop="17305"/>
            <exon e_start="17391" e_stop="17530"/>
            <exon e_start="17608" e_stop="17713"/>
            <exon e_start="17794" e_stop="18328"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="1.000" acc_prob="0.764" e_score="0.998"/>
          <exon-intron don_prob="0.999" acc_prob="1.000" e_score="1.000"/>
          <exon-intron don_prob="0.999" acc_prob="0.999" e_score="1.000"/>
          <exon-intron don_prob="1.000" acc_prob="0.961" e_score="1.000"/>
          <exon-intron don_prob="0.999" acc_prob="0.979" e_score="1.000"/>
          <exon-intron don_prob="0.999" acc_prob="0.948" e_score="1.000"/>
          <exon-intron don_prob="1.000" acc_prob="0.997" e_score="1.000"/>
          <exon-only e_score="0.927"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.998">
            <gDNA_exon_boundary e_start="14732" e_stop="15182" e_length="451"/>
          </exon>
          <intron i_serial="1" don_prob="1.000" acc_prob="0.764">
            <gDNA_intron_boundary i_start="15183" i_stop="16370" i_length="1188"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="16371" e_stop="16441" e_length="71"/>
          </exon>
          <intron i_serial="2" don_prob="0.999" acc_prob="1.000">
            <gDNA_intron_boundary i_start="16442" i_stop="16813" i_length="372"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="16814" e_stop="16957" e_length="144"/>
          </exon>
          <intron i_serial="3" don_prob="0.999" acc_prob="0.999">
            <gDNA_intron_boundary i_start="16958" i_stop="17055" i_length="98"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="17056" e_stop="17104" e_length="49"/>
          </exon>
          <intron i_serial="4" don_prob="1.000" acc_prob="0.961">
            <gDNA_intron_boundary i_start="17105" i_stop="17188" i_length="84"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="17189" e_stop="17305" e_length="117"/>
          </exon>
          <intron i_serial="5" don_prob="0.999" acc_prob="0.979">
            <gDNA_intron_boundary i_start="17306" i_stop="17390" i_length="85"/>
          </intron>
          <exon e_serial="6" e_score="1.000">
            <gDNA_exon_boundary e_start="17391" e_stop="17530" e_length="140"/>
          </exon>
          <intron i_serial="6" don_prob="0.999" acc_prob="0.948">
            <gDNA_intron_boundary i_start="17531" i_stop="17607" i_length="77"/>
          </intron>
          <exon e_serial="7" e_score="1.000">
            <gDNA_exon_boundary e_start="17608" e_stop="17713" e_length="106"/>
          </exon>
          <intron i_serial="7" don_prob="1.000" acc_prob="0.997">
            <gDNA_intron_boundary i_start="17714" i_stop="17793" i_length="80"/>
          </intron>
          <exon e_serial="8" e_score="0.927">
            <gDNA_exon_boundary e_start="17794" e_stop="18328" e_length="535"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="14732" stop="15179"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E390600" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="14937" stop="15178"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E472572" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="14937" stop="15116"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E345097" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="14950" stop="15182"/>
              <exon start="16371" stop="16441"/>
              <exon start="16814" stop="16957"/>
              <exon start="17056" stop="17082"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E365622" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="14970" stop="15179"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E289269" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="14977" stop="15177"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E470973" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="16380" stop="16441"/>
              <exon start="16814" stop="16957"/>
              <exon start="17056" stop="17104"/>
              <exon start="17189" stop="17305"/>
              <exon start="17391" stop="17454"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E282909" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="16380" stop="16441"/>
              <exon start="16814" stop="16957"/>
              <exon start="17056" stop="17104"/>
              <exon start="17189" stop="17305"/>
              <exon start="17391" stop="17426"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E278884" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="16380" stop="16441"/>
              <exon start="16814" stop="16957"/>
              <exon start="17056" stop="17064"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E289724" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="16383" stop="16441"/>
              <exon start="16814" stop="16957"/>
              <exon start="17056" stop="17063"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E471224" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="16395" stop="16441"/>
              <exon start="16814" stop="16957"/>
              <exon start="17056" stop="17104"/>
              <exon start="17189" stop="17305"/>
              <exon start="17391" stop="17530"/>
              <exon start="17608" stop="17713"/>
              <exon start="17794" stop="18011"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E728631" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="16395" stop="16441"/>
              <exon start="16814" stop="16957"/>
              <exon start="17056" stop="17104"/>
              <exon start="17189" stop="17305"/>
              <exon start="17391" stop="17530"/>
              <exon start="17608" stop="17713"/>
              <exon start="17794" stop="18011"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E738380" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="16397" stop="16441"/>
              <exon start="16814" stop="16957"/>
              <exon start="17056" stop="17104"/>
              <exon start="17189" stop="17305"/>
              <exon start="17391" stop="17486"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E278996" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="16814" stop="16957"/>
              <exon start="17056" stop="17104"/>
              <exon start="17189" stop="17200"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E278639" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="16847" stop="16957"/>
              <exon start="17056" stop="17104"/>
              <exon start="17189" stop="17218"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E298503" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="16857" stop="16957"/>
              <exon start="17056" stop="17104"/>
              <exon start="17189" stop="17305"/>
              <exon start="17391" stop="17530"/>
              <exon start="17608" stop="17713"/>
              <exon start="17794" stop="18010"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E737813" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="16892" stop="16957"/>
              <exon start="17056" stop="17104"/>
              <exon start="17189" stop="17305"/>
              <exon start="17391" stop="17530"/>
              <exon start="17608" stop="17699"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E475944" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="16896" stop="16957"/>
              <exon start="17056" stop="17104"/>
              <exon start="17189" stop="17305"/>
              <exon start="17391" stop="17530"/>
              <exon start="17608" stop="17713"/>
              <exon start="17794" stop="17893"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E295257" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="16896" stop="16957"/>
              <exon start="17056" stop="17104"/>
              <exon start="17189" stop="17305"/>
              <exon start="17391" stop="17530"/>
              <exon start="17608" stop="17713"/>
              <exon start="17794" stop="17818"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E296160" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="16927" stop="16957"/>
              <exon start="17056" stop="17104"/>
              <exon start="17189" stop="17305"/>
              <exon start="17391" stop="17530"/>
              <exon start="17608" stop="17713"/>
              <exon start="17794" stop="18069"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E734210" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="16928" stop="16957"/>
              <exon start="17056" stop="17104"/>
              <exon start="17189" stop="17305"/>
              <exon start="17391" stop="17530"/>
              <exon start="17608" stop="17713"/>
              <exon start="17794" stop="18096"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E734101" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="16929" stop="16957"/>
              <exon start="17056" stop="17104"/>
              <exon start="17189" stop="17305"/>
              <exon start="17391" stop="17530"/>
              <exon start="17608" stop="17713"/>
              <exon start="17794" stop="17926"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E283889" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="16934" stop="16957"/>
              <exon start="17056" stop="17104"/>
              <exon start="17189" stop="17305"/>
              <exon start="17391" stop="17530"/>
              <exon start="17608" stop="17713"/>
              <exon start="17794" stop="17874"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E298369" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="16945" stop="16957"/>
              <exon start="17056" stop="17104"/>
              <exon start="17189" stop="17305"/>
              <exon start="17391" stop="17530"/>
              <exon start="17608" stop="17713"/>
              <exon start="17794" stop="18159"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E691066" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="16948" stop="16957"/>
              <exon start="17056" stop="17104"/>
              <exon start="17189" stop="17305"/>
              <exon start="17391" stop="17530"/>
              <exon start="17608" stop="17713"/>
              <exon start="17794" stop="18158"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E691065" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="16948" stop="16957"/>
              <exon start="17056" stop="17104"/>
              <exon start="17189" stop="17305"/>
              <exon start="17391" stop="17530"/>
              <exon start="17608" stop="17713"/>
              <exon start="17794" stop="18012"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E295882" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="16949" stop="16957"/>
              <exon start="17056" stop="17104"/>
              <exon start="17189" stop="17305"/>
              <exon start="17391" stop="17530"/>
              <exon start="17608" stop="17713"/>
              <exon start="17794" stop="18150"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E694906" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="17059" stop="17104"/>
              <exon start="17189" stop="17305"/>
              <exon start="17391" stop="17530"/>
              <exon start="17608" stop="17703"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E289687" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="17192" stop="17305"/>
              <exon start="17391" stop="17530"/>
              <exon start="17608" stop="17713"/>
              <exon start="17794" stop="18157"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E372118" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="17194" stop="17305"/>
              <exon start="17391" stop="17530"/>
              <exon start="17608" stop="17713"/>
              <exon start="17794" stop="17831"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E289789" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="17199" stop="17305"/>
              <exon start="17391" stop="17530"/>
              <exon start="17608" stop="17713"/>
              <exon start="17794" stop="17873"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E278109" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="17215" stop="17305"/>
              <exon start="17391" stop="17528"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E290692" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="17218" stop="17305"/>
              <exon start="17391" stop="17530"/>
              <exon start="17608" stop="17713"/>
              <exon start="17794" stop="18144"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E402991" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="17224" stop="17305"/>
              <exon start="17391" stop="17530"/>
              <exon start="17608" stop="17713"/>
              <exon start="17794" stop="18155"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E694905" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="17239" stop="17305"/>
              <exon start="17391" stop="17530"/>
              <exon start="17608" stop="17713"/>
              <exon start="17794" stop="17987"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E296253" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="17240" stop="17305"/>
              <exon start="17391" stop="17530"/>
              <exon start="17608" stop="17713"/>
              <exon start="17794" stop="17924"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E278631" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="17265" stop="17305"/>
              <exon start="17391" stop="17530"/>
              <exon start="17608" stop="17713"/>
              <exon start="17794" stop="18142"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E342393" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="17266" stop="17305"/>
              <exon start="17391" stop="17530"/>
              <exon start="17608" stop="17713"/>
              <exon start="17794" stop="18016"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E298412" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="17288" stop="17305"/>
              <exon start="17391" stop="17530"/>
              <exon start="17608" stop="17713"/>
              <exon start="17794" stop="18157"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E734692" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="17397" stop="17530"/>
              <exon start="17608" stop="17713"/>
              <exon start="17794" stop="17932"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E291385" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="17401" stop="17530"/>
              <exon start="17608" stop="17713"/>
              <exon start="17794" stop="18087"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E285134" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="17435" stop="17530"/>
              <exon start="17608" stop="17713"/>
              <exon start="17794" stop="18157"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E366177" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="17441" stop="17530"/>
              <exon start="17608" stop="17713"/>
              <exon start="17794" stop="18105"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E295890" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="17473" stop="17530"/>
              <exon start="17608" stop="17713"/>
              <exon start="17794" stop="18035"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E293777" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="17475" stop="17530"/>
              <exon start="17608" stop="17713"/>
              <exon start="17794" stop="18158"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E734573" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="17475" stop="17530"/>
              <exon start="17608" stop="17713"/>
              <exon start="17794" stop="18129"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E297794" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="17476" stop="17530"/>
              <exon start="17608" stop="17713"/>
              <exon start="17794" stop="18158"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E734337" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="17486" stop="17530"/>
              <exon start="17608" stop="17713"/>
              <exon start="17794" stop="18155"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E734148" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="17487" stop="17530"/>
              <exon start="17608" stop="17713"/>
              <exon start="17794" stop="18328"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E740588" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="17503" stop="17530"/>
              <exon start="17608" stop="17713"/>
              <exon start="17794" stop="18158"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E291224" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="17519" stop="17530"/>
              <exon start="17608" stop="17713"/>
              <exon start="17794" stop="18119"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E294938" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="17611" stop="17713"/>
              <exon start="17794" stop="18145"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E545781" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="17615" stop="17713"/>
              <exon start="17794" stop="18081"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E390842" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="17623" stop="17713"/>
              <exon start="17794" stop="18133"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E278439" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="17672" stop="17713"/>
              <exon start="17794" stop="18160"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E397296" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="17675" stop="17713"/>
              <exon start="17794" stop="18134"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E237382" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="17676" stop="17713"/>
              <exon start="17794" stop="18049"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E378485" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="17678" stop="17713"/>
              <exon start="17794" stop="18134"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E237283" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="17681" stop="17713"/>
              <exon start="17794" stop="18145"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E290956" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="17704" stop="17713"/>
              <exon start="17794" stop="18130"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E288144" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="17797" stop="18134"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E234581" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="17910" stop="18159"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E297630" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="17943" stop="18156"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E287260" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="4" AGS_serial="11" gDNA_strand="+"/>
          <translation>
            <gDNA_template>TTGAAATGTAAGGTTCTTGGCTTCTTAGCCATATGATATTAAGGCAAAAGTAAGATACAACATTGAATCTCCAACGTACAAACCTCATCTACAATGGATTGAAGCTCTCATTTGCTTAGCCATCACTTTCAACATTGTCTATTGGATTGGTTATATGTAAGAGTTCAAAAGCAGCAATAATCAAGAACACATCACTAGCTATACTATTACTAGTTAGTAACAAAGTAGTATAAAGGGCAAGCAAAAGCTAAAGGAAGCTCATTGAGAAATGTCAACTGCTTCCATTAACAATTGCCTTACTCTCTCCCCTGCTCAAGCTTCCCTTAAGAAACCTACTCGTCCCGTTGCCTTCGCAAGGCTTGGCAACTCTTCTTCTTCTTCTTCTATTCCAAGTCTCATCAGAAACGAGCCCGTCTTTGCTGCCCCTACTCCCATCATCAACCCCATTGTG : AATTTGCAGAGAGAAGAAATGGCAAAAGAATCCTACGATCAAGCCATTGCTGCACTCGAGAAACTCCTCAG : CGAGAAAGCAGAACTTGGACCAGTTGCTGCAGCAAGAGTTGACCAGATCACTGCTGAATTGAAATCAGCAGACGGCGGCAAGGCATTCGACCCTGTTGAGCACATGAAAGCTGGCTTTATTCATTTCAAGACTGAGAAATATGA : CACAAACCCAGCCTTATATGGTGAGCTAGCAAAGGGCCAGAGCCCTAAG : TTCATGGTTTTCGCGTGCTCTGACTCACGAGTCTGCCCATCCCATGTCCTCAACTTCCAACCTGGTGAGGCATTCATGGTTCGTAACATCGCCAACATGGTCCCTGCTTATGACAAG : GTCAGGTACTCTGGAGTAGGAGCAGCCATTGAATACGCCGTTCTTCATCTTAAGGTGGAGAACATCGTTGTCATTGGCCACAGTGCTTGTGGAGGTATCAAAGGTCTCATGTCACTACCTGAAGATGGTAGTGAATCAAC : TGCCTTTATTGAGGATTGGGTAAAAATTTGTTTACCTGCCAAGGCAAAGGTTCTGGCCGATCACGGAGGGAAAGAATTTGCACATCAATGCACAGCTTGTGAGAAG : GAAGCTGTGAACGTTTCACTTGGAAATCTGCTTACGTATCCATTCGTGAGAGAAGGATTGGTGAAGAAAACATTGGCATTGAAGGGAGGTTACTATGATTTCGTGAAGGGTGGATTTGAGCTGTGGGGACTTGAGTTCGGTCTTTCTCCTCCTCTTTCCGTATGAACTTAATTCAATTACCATTTGGCCCTCACAATTTCCTTCCTTTTTTTTTTTTTCGCCTGACAGTACTTTTGCTTCGCAAAATCAACTGTGTGTATGTTGTTTGTATGTATTATGTATGTATGAATCAAATATGGAAGAGCACTCGTTGTTATATTTCTGAAATAAATAAAATGGAGACTACTTTTTGTATAAATACGTTTGTGGTGGGCTTTGGTAGGTAAAAGATGTGGCCAGTATACTGCACTGGAAGCTCATGTAGAGACAGAGAGATCGTCAAGCAACAAGAGGATTCCCAGATTTAATCTGTTATTCTTGCTCATGTAGACCAAAAATTGGCCATAATAATCTACAAACACTCTTTTCGGCTACA</gDNA_template>
            <first_frame> L  K  C  K  V  L  G  F  L  A  I  *  Y  *  G  K  S  K  I  Q  H  *  I  S  N  V  Q  T  S  S  T  M  D  *  S  S  H  L  L  S  H  H  F  Q  H  C  L  L  D  W  L  Y  V  R  V  Q  K  Q  Q  *  S  R  T  H  H  *  L  Y  Y  Y  *  L  V  T  K  *  Y  K  G  Q  A  K  A  K  G  S  S  L  R  N  V  N  C  F  H  *  Q  L  P  Y  S  L  P  C  S  S  F  P  *  E  T  Y  S  S  R  C  L  R  K  A  W  Q  L  F  F  F  F  F  Y  S  K  S  H  Q  K  R  A  R  L  C  C  P  Y  S  H  H  Q  P  H  C   : E  F  A  E  R  R  N  G  K  R  I  L  R  S  S  H  C  C  T  R  E  T  P  Q  :  R  E  S  R  T  W  T  S  C  C  S  K  S  *  P  D  H  C  *  I  E  I  S  R  R  R  Q  G  I  R  P  C  *  A  H  E  S  W  L  Y  S  F  Q  D  *  E  I  *  :  H  K  P  S  L  I  W  *  A  S  K  G  P  E  P  *   : V  H  G  F  R  V  L  *  L  T  S  L  P  I  P  C  P  Q  L  P  T  W  *  G  I  H  G  S  *  H  R  Q  H  G  P  C  L  *  Q   : G  Q  V  L  W  S  R  S  S  H  *  I  R  R  S  S  S  *  G  G  E  H  R  C  H  W  P  Q  C  L  W  R  Y  Q  R  S  H  V  T  T  *  R  W  *  *  I  N  :  C  L  Y  *  G  L  G  K  N  L  F  T  C  Q  G  K  G  S  G  R  S  R  R  E  R  I  C  T  S  M  H  S  L  *  E   : G  S  C  E  R  F  T  W  K  S  A  Y  V  S  I  R  E  R  R  I  G  E  E  N  I  G  I  E  G  R  L  L  *  F  R  E  G  W  I  *  A  V  G  T  *  V  R  S  F  S  S  S  F  R  M  N  L  I  Q  L  P  F  G  P  H  N  F  L  P  F  F  F  F  R  L  T  V  L  L  L  R  K  I  N  C  V  Y  V  V  C  M  Y  Y  V  C  M  N  Q  I  W  K  S  T  R  C  Y  I  S  E  I  N  K  M  E  T  T  F  C  I  N  T  F  V  V  G  F  G  R  *  K  M  W  P  V  Y  C  T  G  S  S  C  R  D  R  E  I  V  K  Q  Q  E  D  S  Q  I  *  S  V  I  L  A  H  V  D  Q  K  L  A  I  I  I  Y  K  H  S  F  R  L   </first_frame>
            <second_frame>  *  N  V  R  F  L  A  S  *  P  Y  D  I  K  A  K  V  R  Y  N  I  E  S  P  T  Y  K  P  H  L  Q  W  I  E  A  L  I  C  L  A  I  T  F  N  I  V  Y  W  I  G  Y  M  *  E  F  K  S  S  N  N  Q  E  H  I  T  S  Y  T  I  T  S  *  *  Q  S  S  I  K  G  K  Q  K  L  K  E  A  H  *  E  M  S  T  A  S  I  N  N  C  L  T  L  S  P  A  Q  A  S  L  K  K  P  T  R  P  V  A  F  A  R  L  G  N  S  S  S  S  S  S  I  P  S  L  I  R  N  E  P  V  F  A  A  P  T  P  I  I  N  P  I  V  :  N  L  Q  R  E  E  M  A  K  E  S  Y  D  Q  A  I  A  A  L  E  K  L  L  S :   E  K  A  E  L  G  P  V  A  A  A  R  V  D  Q  I  T  A  E  L  K  S  A  D  G  G  K  A  F  D  P  V  E  H  M  K  A  G  F  I  H  F  K  T  E  K  Y  D :   T  N  P  A  L  Y  G  E  L  A  K  G  Q  S  P  K  :  F  M  V  F  A  C  S  D  S  R  V  C  P  S  H  V  L  N  F  Q  P  G  E  A  F  M  V  R  N  I  A  N  M  V  P  A  Y  D  K  :  V  R  Y  S  G  V  G  A  A  I  E  Y  A  V  L  H  L  K  V  E  N  I  V  V  I  G  H  S  A  C  G  G  I  K  G  L  M  S  L  P  E  D  G  S  E  S  T :   A  F  I  E  D  W  V  K  I  C  L  P  A  K  A  K  V  L  A  D  H  G  G  K  E  F  A  H  Q  C  T  A  C  E  K  :  E  A  V  N  V  S  L  G  N  L  L  T  Y  P  F  V  R  E  G  L  V  K  K  T  L  A  L  K  G  G  Y  Y  D  F  V  K  G  G  F  E  L  W  G  L  E  F  G  L  S  P  P  L  S  V  *  T  *  F  N  Y  H  L  A  L  T  I  S  F  L  F  F  F  F  A  *  Q  Y  F  C  F  A  K  S  T  V  C  M  L  F  V  C  I  M  Y  V  *  I  K  Y  G  R  A  L  V  V  I  F  L  K  *  I  K  W  R  L  L  F  V  *  I  R  L  W  W  A  L  V  G  K  R  C  G  Q  Y  T  A  L  E  A  H  V  E  T  E  R  S  S  S  N  K  R  I  P  R  F  N  L  L  F  L  L  M  *  T  K  N  W  P  *  *  S  T  N  T  L  F  G  Y  </second_frame>
            <third_frame>   E  M  *  G  S  W  L  L  S  H  M  I  L  R  Q  K  *  D  T  T  L  N  L  Q  R  T  N  L  I  Y  N  G  L  K  L  S  F  A  *  P  S  L  S  T  L  S  I  G  L  V  I  C  K  S  S  K  A  A  I  I  K  N  T  S  L  A  I  L  L  L  V  S  N  K  V  V  *  R  A  S  K  S  *  R  K  L  I  E  K  C  Q  L  L  P  L  T  I  A  L  L  S  P  L  L  K  L  P  L  R  N  L  L  V  P  L  P  S  Q  G  L  A  T  L  L  L  L  L  L  F  Q  V  S  S  E  T  S  P  S  L  L  P  L  L  P  S  S  T  P  L  * :   I  C  R  E  K  K  W  Q  K  N  P  T  I  K  P  L  L  H  S  R  N  S  S   : A  R  K  Q  N  L  D  Q  L  L  Q  Q  E  L  T  R  S  L  L  N  *  N  Q  Q  T  A  A  R  H  S  T  L  L  S  T  *  K  L  A  L  F  I  S  R  L  R  N  M   : T  Q  T  Q  P  Y  M  V  S  *  Q  R  A  R  A  L  S :   S  W  F  S  R  A  L  T  H  E  S  A  H  P  M  S  S  T  S  N  L  V  R  H  S  W  F  V  T  S  P  T  W  S  L  L  M  T  R :   S  G  T  L  E  *  E  Q  P  L  N  T  P  F  F  I  L  R  W  R  T  S  L  S  L  A  T  V  L  V  E  V  S  K  V  S  C  H  Y  L  K  M  V  V  N  Q   : L  P  L  L  R  I  G  *  K  F  V  Y  L  P  R  Q  R  F  W  P  I  T  E  G  K  N  L  H  I  N  A  Q  L  V  R  R :   K  L  *  T  F  H  L  E  I  C  L  R  I  H  S  *  E  K  D  W  *  R  K  H  W  H  *  R  E  V  T  M  I  S  *  R  V  D  L  S  C  G  D  L  S  S  V  F  L  L  L  F  P  Y  E  L  N  S  I  T  I  W  P  S  Q  F  P  S  F  F  F  F  S  P  D  S  T  F  A  S  Q  N  Q  L  C  V  C  C  L  Y  V  L  C  M  Y  E  S  N  M  E  E  H  S  L  L  Y  F  *  N  K  *  N  G  D  Y  F  L  Y  K  Y  V  C  G  G  L  W  *  V  K  D  V  A  S  I  L  H  W  K  L  M  *  R  Q  R  D  R  Q  A  T  R  G  F  P  D  L  I  C  Y  S  C  S  C  R  P  K  I  G  H  N  N  L  Q  T  L  F  S  A  T </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02HBa0236E02.1" strand="+"/>
                <serials PGL_serial="4" AGS_serial="11" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="14997" stop="15182"/>
                    <exon start="16371" stop="16441"/>
                    <exon start="16814" stop="16957"/>
                    <exon start="17056" stop="17104"/>
                    <exon start="17189" stop="17305"/>
                    <exon start="17391" stop="17530"/>
                    <exon start="17608" stop="17713"/>
                    <exon start="17794" stop="17958"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>975</number_coding_nucleotides>
                  <number_encoded_amino_acids>325</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>EMSTASINNCLTLSPAQASLKKPTRPVAFARLGNSSSSSSIPSLIRNEPVFAAPTPIINPIVNLQREEMAKESYDQAIAALEKLLSEKAELGPVAAARVDQITAELKSADGGKAFDPVEHMKAGFIHFKTEKYDTNPALYGELAKGQSPKFMVFACSDSRVCPSHVLNFQPGEAFMVRNIANMVPAYDKVRYSGVGAAIEYAVLHLKVENIVVIGHSACGGIKGLMSLPEDGSESTAFIEDWVKICLPAKAKVLADHGGKEFAHQCTACEKEAVNVSLGNLLTYPFVREGLVKKTLALKGGYYDFVKGGFELWGLEFGLSPPLSV*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C02HBa0236E02.1" strand="+"/>
                <serials PGL_serial="4" AGS_serial="11" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="17928" stop="18179"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>249</number_coding_nucleotides>
                  <number_encoded_amino_acids>83</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>VRSFSSSFRMNLIQLPFGPHNFLPFFFFRLTVLLLRKINCVYVVCMYYVCMNQIWKSTRCYISEINKMETTFCINTFVVGFGR*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="5" PGL_strand="-" PGL_start="18123" PGL_stop="17899"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="18123" e_stop="17899"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.996"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.996">
            <gDNA_exon_boundary e_start="18123" e_stop="17899" e_length="225"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="18123" stop="17899"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E289268" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="5" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>TTATTTCAGAAATATAACAACGAGTGCTCTTCCATATTTGATTCATACATACATAATACATACAAACAACATACACACAGTTGATTTTGCGAAGCAAAAGTACTGTCAGGCGAAAAAAAAAAAAAGGAAGGAAATTGTGAGGGCCAAATGGTAATTGAATTAAGTTCATACGGAAAGAGGAGGAGAAAGACCGAACTCAAGTCCCCACAGCTCAAATCCACCCTT</gDNA_template>
            <first_frame> L  F  Q  K  Y  N  N  E  C  S  S  I  F  D  S  Y  I  H  N  T  Y  K  Q  H  T  H  S  *  F  C  E  A  K  V  L  S  G  E  K  K  K  K  E  G  N  C  E  G  Q  M  V  I  E  L  S  S  Y  G  K  R  R  R  K  T  E  L  K  S  P  Q  L  K  S  T  L </first_frame>
            <second_frame>  Y  F  R  N  I  T  T  S  A  L  P  Y  L  I  H  T  Y  I  I  H  T  N  N  I  H  T  V  D  F  A  K  Q  K  Y  C  Q  A  K  K  K  K  R  K  E  I  V  R  A  K  W  *  L  N  *  V  H  T  E  R  G  G  E  R  P  N  S  S  P  H  S  S  N  P  P   </second_frame>
            <third_frame>   I  S  E  I  *  Q  R  V  L  F  H  I  *  F  I  H  T  *  Y  I  Q  T  T  Y  T  Q  L  I  L  R  S  K  S  T  V  R  R  K  K  K  K  G  R  K  L  *  G  P  N  G  N  *  I  K  F  I  R  K  E  E  E  K  D  R  T  Q  V  P  T  A  Q  I  H  P  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <none gDNA_id="C02HBa0236E02.1"/>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="6" PGL_strand="-" PGL_start="20743" PGL_stop="20472"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="20743" e_stop="20472"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.949"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.949">
            <gDNA_exon_boundary e_start="20743" e_stop="20472" e_length="272"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="20743" stop="20472"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E278374" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="6" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>AGTGCATGCCACAAAAATACTATCCATAAGCTTCTTCCCGTAGTTGGACTGGTCACCGGAAGAGGCATAGTTAGAGCAAATACGCCGAGCGCAGACCACACTGCCGGAGAAACCAGGTATTTTCCGGCAGAGTAAAGACTTAGCAAGTTGAAATCGATCTGAGCCGGAAAATTTCCGTGCCGGAGTTGTGGAGAAGCAAGCAGAAGAAGCTAGGGAGTGTGAAGATGCAGCCATTGTTAAGAAGACAACTGGTGAGAGCAAAGAGGAAGACC</gDNA_template>
            <first_frame> S  A  C  H  K  N  T  I  H  K  L  L  P  V  V  G  L  V  T  G  R  G  I  V  R  A  N  T  P  S  A  D  H  T  A  G  E  T  R  Y  F  P  A  E  *  R  L  S  K  L  K  S  I  *  A  G  K  F  P  C  R  S  C  G  E  A  S  R  R  S  *  G  V  *  R  C  S  H  C  *  E  D  N  W  *  E  Q  R  G  R   </first_frame>
            <second_frame>  V  H  A  T  K  I  L  S  I  S  F  F  P  *  L  D  W  S  P  E  E  A  *  L  E  Q  I  R  R  A  Q  T  T  L  P  E  K  P  G  I  F  R  Q  S  K  D  L  A  S  *  N  R  S  E  P  E  N  F  R  A  G  V  V  E  K  Q  A  E  E  A  R  E  C  E  D  A  A  I  V  K  K  T  T  G  E  S  K  E  E  D  </second_frame>
            <third_frame>   C  M  P  Q  K  Y  Y  P  *  A  S  S  R  S  W  T  G  H  R  K  R  H  S  *  S  K  Y  A  E  R  R  P  H  C  R  R  N  Q  V  F  S  G  R  V  K  T  *  Q  V  E  I  D  L  S  R  K  I  S  V  P  E  L  W  R  S  K  Q  K  K  L  G  S  V  K  M  Q  P  L  L  R  R  Q  L  V  R  A  K  R  K  T </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <none gDNA_id="C02HBa0236E02.1"/>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="7" PGL_strand="+" PGL_start="20477" PGL_stop="26064"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="20477" e_stop="20904"/>
            <exon e_start="21088" e_stop="21210"/>
            <exon e_start="21518" e_stop="21689"/>
            <exon e_start="22414" e_stop="22451"/>
            <exon e_start="22864" e_stop="23062"/>
            <exon e_start="23245" e_stop="23397"/>
            <exon e_start="23598" e_stop="23732"/>
            <exon e_start="24189" e_stop="24460"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.964" acc_prob="0.997" e_score="1.000"/>
          <exon-intron don_prob="0.997" acc_prob="0.000" e_score="1.000"/>
          <exon-intron don_prob="0.928" acc_prob="0.991" e_score="1.000"/>
          <exon-intron don_prob="0.968" acc_prob="0.886" e_score="1.000"/>
          <exon-intron don_prob="0.996" acc_prob="0.999" e_score="1.000"/>
          <exon-intron don_prob="1.000" acc_prob="0.908" e_score="1.000"/>
          <exon-intron don_prob="0.999" acc_prob="0.995" e_score="1.000"/>
          <exon-only e_score="0.993"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="20477" e_stop="20904" e_length="428"/>
          </exon>
          <intron i_serial="1" don_prob="0.964" acc_prob="0.997">
            <gDNA_intron_boundary i_start="20905" i_stop="21087" i_length="183"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="21088" e_stop="21210" e_length="123"/>
          </exon>
          <intron i_serial="2" don_prob="0.997" acc_prob="0.000">
            <gDNA_intron_boundary i_start="21211" i_stop="21517" i_length="307"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="21518" e_stop="21689" e_length="172"/>
          </exon>
          <intron i_serial="3" don_prob="0.928" acc_prob="0.991">
            <gDNA_intron_boundary i_start="21690" i_stop="22413" i_length="724"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="22414" e_stop="22451" e_length="38"/>
          </exon>
          <intron i_serial="4" don_prob="0.968" acc_prob="0.886">
            <gDNA_intron_boundary i_start="22452" i_stop="22863" i_length="412"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="22864" e_stop="23062" e_length="199"/>
          </exon>
          <intron i_serial="5" don_prob="0.996" acc_prob="0.999">
            <gDNA_intron_boundary i_start="23063" i_stop="23244" i_length="182"/>
          </intron>
          <exon e_serial="6" e_score="1.000">
            <gDNA_exon_boundary e_start="23245" e_stop="23397" e_length="153"/>
          </exon>
          <intron i_serial="6" don_prob="1.000" acc_prob="0.908">
            <gDNA_intron_boundary i_start="23398" i_stop="23597" i_length="200"/>
          </intron>
          <exon e_serial="7" e_score="1.000">
            <gDNA_exon_boundary e_start="23598" e_stop="23732" e_length="135"/>
          </exon>
          <intron i_serial="7" don_prob="0.999" acc_prob="0.995">
            <gDNA_intron_boundary i_start="23733" i_stop="24188" i_length="456"/>
          </intron>
          <exon e_serial="8" e_score="0.993">
            <gDNA_exon_boundary e_start="24189" e_stop="24460" e_length="272"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="20477" stop="20904"/>
              <exon start="21088" stop="21210"/>
              <exon start="21518" stop="21667"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E332335" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="20480" stop="20854"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E329180" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="20481" stop="20904"/>
              <exon start="21088" stop="21210"/>
              <exon start="21518" stop="21689"/>
              <exon start="22414" stop="22451"/>
              <exon start="22864" stop="22891"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E704574" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="20482" stop="20904"/>
              <exon start="21088" stop="21210"/>
              <exon start="21518" stop="21548"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E302347" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="20483" stop="20904"/>
              <exon start="21088" stop="21210"/>
              <exon start="21518" stop="21549"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E291953" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="20493" stop="20904"/>
              <exon start="21088" stop="21210"/>
              <exon start="21518" stop="21689"/>
              <exon start="22414" stop="22451"/>
              <exon start="22864" stop="22908"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E621415" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="20493" stop="20904"/>
              <exon start="21088" stop="21210"/>
              <exon start="21518" stop="21689"/>
              <exon start="22414" stop="22429"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E418571" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="20493" stop="20904"/>
              <exon start="21088" stop="21116"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E442314" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="20493" stop="20742"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E439642" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="20495" stop="20904"/>
              <exon start="21088" stop="21187"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E725724" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="20500" stop="20904"/>
              <exon start="21088" stop="21210"/>
              <exon start="21518" stop="21648"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E249718" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="20547" stop="20904"/>
              <exon start="21088" stop="21210"/>
              <exon start="21518" stop="21548"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E621090" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="20591" stop="20904"/>
              <exon start="21088" stop="21210"/>
              <exon start="21518" stop="21645"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E406320" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="20649" stop="20904"/>
              <exon start="21088" stop="21210"/>
              <exon start="21518" stop="21689"/>
              <exon start="22414" stop="22440"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E274855" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="20649" stop="20904"/>
              <exon start="21088" stop="21210"/>
              <exon start="21518" stop="21607"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E276746" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="21109" stop="21210"/>
              <exon start="21518" stop="21689"/>
              <exon start="22414" stop="22451"/>
              <exon start="22864" stop="23062"/>
              <exon start="23245" stop="23397"/>
              <exon start="23598" stop="23606"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E616284" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="21152" stop="21210"/>
              <exon start="21518" stop="21689"/>
              <exon start="22414" stop="22451"/>
              <exon start="22864" stop="23062"/>
              <exon start="23245" stop="23340"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E303366" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="21637" stop="21689"/>
              <exon start="22414" stop="22451"/>
              <exon start="22864" stop="23062"/>
              <exon start="23245" stop="23397"/>
              <exon start="23598" stop="23693"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E286262" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="21644" stop="21689"/>
              <exon start="22414" stop="22451"/>
              <exon start="22864" stop="23062"/>
              <exon start="23245" stop="23397"/>
              <exon start="23598" stop="23732"/>
              <exon start="24189" stop="24327"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E710799" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="22414" stop="22451"/>
              <exon start="22864" stop="23062"/>
              <exon start="23245" stop="23397"/>
              <exon start="23598" stop="23732"/>
              <exon start="24189" stop="24439"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E418572" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="23319" stop="23397"/>
              <exon start="23598" stop="23732"/>
              <exon start="24189" stop="24460"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E278984" strand="-"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="7" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>TCCTCTTTGCTCTCACCAGTTGTCTTCTTAACAATGGCTGCATCTTCACACTCCCTAGCTTCTTCTGCTTGCTTCTCCACAACTCCGGCACGGAAATTTTCCGGCTCAGATCGATTTCAACTTGCTAAGTCTTTACTCTGCCGGAAAATACCTGGTTTCTCCGGCAGTGTGGTCTGCGCTCGGCGTATTTGCTCTAACTATGCCTCTTCCGGTGACCAGTCCAACTACGGGAAGAAGCTTATGGATAGTATTTTTGTGGCATGCACTTCCGTTGCCTTGTCTTTCTCTCTCTATATAGCAGACGTTGACCCTGCCTCGGCTTTTGTAGTCACTTCACCCAGGAAATTGCAGACTGATGAACTTGCTACTGTTCGTCTCTTCCAAGAGAATACACCTTCCGTTGTGTATATTACTAATCTTGCTTCCAG : GCAGGATATGTTCACACTGGATGTATTTGAGGTGCCTCAAGGGTCTGGGTCAGGCTTCGTCTGGGATAAAAATGGAAATATTGTTACTAATTATCATGTGATTCGAGGTGCTTCTGATCTCAG : AGTGACTCTTGCTGATCAAACTACTTATGATGCAAAAGTTGTTGGATTTGACCAAGATAAAGATGTTGCTGTGTTGCATATTGATGCACCAAAAGACAAGTTGCGACCTATACCAATTGGCGTATCGGCAGACTTGCTCGTTGGTCAAAAAGTATTTGCTATTGGAAATCCA : TTTGGACTTGATCATACACTCACCACTGGTGTAATCAG : TGGGCTTAGGAGAGAAATCAATTCTGCGGCTACTGGCCGCCCAATCCAAGATGTTATTCAGACAGATGCAGCAATCAATCCTGGTAACAGTGGAGGGCCACTTCTAGATAGTTCTGGAAATCTTATTGGAATAAATACTGCTATATATTCTCCTTCCGGTGCATCATCAGGTGTTGGATTTTCAATTCCAGTTGATACT : GTCAGTGGCATTGTTGATCAGTTAGTGCAGTTTGGGAAAGTCACAAGGCCAATTTTGGGCATAAAGTTTGCACCTGATCAGTCCGTTGAGCAACTGGGAGTCACTGGAGTACTTGTCCTGGATGCTCCTCCAAATGGTCCTGCAGGCAAAGCA : GGTCTTCTACCTACTAAACGTGATTCCTACGGAAGACTTATTTTAGGTGATATAATCACATCTATAAATGGAAAGAAGGTCTCTAATGGCACCGACTTGTACAGAATTCTTGACCAATGCAAAGTTGGAGAAAAG : GTAATTGTGGAAGTGCTGCGTGGGGATCAGAAAGAGAAGATCCCTGTACTTCTGGAACCAAAGCCTGAAGAATCGTAGTTCCTCAAATGGATAGAGTATGTGTTGATATGCATTTCTTGGCGAACAAGCCCATATTATTAGTGCATCAATTGTTGAATGGTTGTGTATATACAAAACAACGCTTAAAACTAGGGTGCAAGCAATATAGTTGGGAGTCTAACACTGCTGCCTAAATATTTCTACTATATTAGATATCCTCAAATTGTATAATG</gDNA_template>
            <first_frame> S  S  L  L  S  P  V  V  F  L  T  M  A  A  S  S  H  S  L  A  S  S  A  C  F  S  T  T  P  A  R  K  F  S  G  S  D  R  F  Q  L  A  K  S  L  L  C  R  K  I  P  G  F  S  G  S  V  V  C  A  R  R  I  C  S  N  Y  A  S  S  G  D  Q  S  N  Y  G  K  K  L  M  D  S  I  F  V  A  C  T  S  V  A  L  S  F  S  L  Y  I  A  D  V  D  P  A  S  A  F  V  V  T  S  P  R  K  L  Q  T  D  E  L  A  T  V  R  L  F  Q  E  N  T  P  S  V  V  Y  I  T  N  L  A  S  R :   Q  D  M  F  T  L  D  V  F  E  V  P  Q  G  S  G  S  G  F  V  W  D  K  N  G  N  I  V  T  N  Y  H  V  I  R  G  A  S  D  L  R :   V  T  L  A  D  Q  T  T  Y  D  A  K  V  V  G  F  D  Q  D  K  D  V  A  V  L  H  I  D  A  P  K  D  K  L  R  P  I  P  I  G  V  S  A  D  L  L  V  G  Q  K  V  F  A  I  G  N  P  :  F  G  L  D  H  T  L  T  T  G  V  I  S :   G  L  R  R  E  I  N  S  A  A  T  G  R  P  I  Q  D  V  I  Q  T  D  A  A  I  N  P  G  N  S  G  G  P  L  L  D  S  S  G  N  L  I  G  I  N  T  A  I  Y  S  P  S  G  A  S  S  G  V  G  F  S  I  P  V  D  T  :  V  S  G  I  V  D  Q  L  V  Q  F  G  K  V  T  R  P  I  L  G  I  K  F  A  P  D  Q  S  V  E  Q  L  G  V  T  G  V  L  V  L  D  A  P  P  N  G  P  A  G  K  A  :  G  L  L  P  T  K  R  D  S  Y  G  R  L  I  L  G  D  I  I  T  S  I  N  G  K  K  V  S  N  G  T  D  L  Y  R  I  L  D  Q  C  K  V  G  E  K  :  V  I  V  E  V  L  R  G  D  Q  K  E  K  I  P  V  L  L  E  P  K  P  E  E  S  *  F  L  K  W  I  E  Y  V  L  I  C  I  S  W  R  T  S  P  Y  Y  *  C  I  N  C  *  M  V  V  Y  I  Q  N  N  A  *  N  *  G  A  S  N  I  V  G  S  L  T  L  L  P  K  Y  F  Y  Y  I  R  Y  P  Q  I  V  *   </first_frame>
            <second_frame>  P  L  C  S  H  Q  L  S  S  *  Q  W  L  H  L  H  T  P  *  L  L  L  L  A  S  P  Q  L  R  H  G  N  F  P  A  Q  I  D  F  N  L  L  S  L  Y  S  A  G  K  Y  L  V  S  P  A  V  W  S  A  L  G  V  F  A  L  T  M  P  L  P  V  T  S  P  T  T  G  R  S  L  W  I  V  F  L  W  H  A  L  P  L  P  C  L  S  L  S  I  *  Q  T  L  T  L  P  R  L  L  *  S  L  H  P  G  N  C  R  L  M  N  L  L  L  F  V  S  S  K  R  I  H  L  P  L  C  I  L  L  I  L  L  P   : G  R  I  C  S  H  W  M  Y  L  R  C  L  K  G  L  G  Q  A  S  S  G  I  K  M  E  I  L  L  L  I  I  M  *  F  E  V  L  L  I  S   : E  *  L  L  L  I  K  L  L  M  M  Q  K  L  L  D  L  T  K  I  K  M  L  L  C  C  I  L  M  H  Q  K  T  S  C  D  L  Y  Q  L  A  Y  R  Q  T  C  S  L  V  K  K  Y  L  L  L  E  I  H :   L  D  L  I  I  H  S  P  L  V  *  S   : V  G  L  G  E  K  S  I  L  R  L  L  A  A  Q  S  K  M  L  F  R  Q  M  Q  Q  S  I  L  V  T  V  E  G  H  F  *  I  V  L  E  I  L  L  E  *  I  L  L  Y  I  L  L  P  V  H  H  Q  V  L  D  F  Q  F  Q  L  I  L :   S  V  A  L  L  I  S  *  C  S  L  G  K  S  Q  G  Q  F  W  A  *  S  L  H  L  I  S  P  L  S  N  W  E  S  L  E  Y  L  S  W  M  L  L  Q  M  V  L  Q  A  K  Q :   V  F  Y  L  L  N  V  I  P  T  E  D  L  F  *  V  I  *  S  H  L  *  M  E  R  R  S  L  M  A  P  T  C  T  E  F  L  T  N  A  K  L  E  K  R :   *  L  W  K  C  C  V  G  I  R  K  R  R  S  L  Y  F  W  N  Q  S  L  K  N  R  S  S  S  N  G  *  S  M  C  *  Y  A  F  L  G  E  Q  A  H  I  I  S  A  S  I  V  E  W  L  C  I  Y  K  T  T  L  K  T  R  V  Q  A  I  *  L  G  V  *  H  C  C  L  N  I  S  T  I  L  D  I  L  K  L  Y  N  </second_frame>
            <third_frame>   L  F  A  L  T  S  C  L  L  N  N  G  C  I  F  T  L  P  S  F  F  C  L  L  L  H  N  S  G  T  E  I  F  R  L  R  S  I  S  T  C  *  V  F  T  L  P  E  N  T  W  F  L  R  Q  C  G  L  R  S  A  Y  L  L  *  L  C  L  F  R  *  P  V  Q  L  R  E  E  A  Y  G  *  Y  F  C  G  M  H  F  R  C  L  V  F  L  S  L  Y  S  R  R  *  P  C  L  G  F  C  S  H  F  T  Q  E  I  A  D  *  *  T  C  Y  C  S  S  L  P  R  E  Y  T  F  R  C  V  Y  Y  *  S  C  F  Q  :  A  G  Y  V  H  T  G  C  I  *  G  A  S  R  V  W  V  R  L  R  L  G  *  K  W  K  Y  C  Y  *  L  S  C  D  S  R  C  F  *  S  Q  :  S  D  S  C  *  S  N  Y  L  *  C  K  S  C  W  I  *  P  R  *  R  C  C  C  V  A  Y  *  C  T  K  R  Q  V  A  T  Y  T  N  W  R  I  G  R  L  A  R  W  S  K  S  I  C  Y  W  K  S   : I  W  T  *  S  Y  T  H  H  W  C  N  Q  :  W  A  *  E  R  N  Q  F  C  G  Y  W  P  P  N  P  R  C  Y  S  D  R  C  S  N  Q  S  W  *  Q  W  R  A  T  S  R  *  F  W  K  S  Y  W  N  K  Y  C  Y  I  F  S  F  R  C  I  I  R  C  W  I  F  N  S  S  *  Y   : C  Q  W  H  C  *  S  V  S  A  V  W  E  S  H  K  A  N  F  G  H  K  V  C  T  *  S  V  R  *  A  T  G  S  H  W  S  T  C  P  G  C  S  S  K  W  S  C  R  Q  S   : R  S  S  T  Y  *  T  *  F  L  R  K  T  Y  F  R  *  Y  N  H  I  Y  K  W  K  E  G  L  *  W  H  R  L  V  Q  N  S  *  P  M  Q  S  W  R  K   : G  N  C  G  S  A  A  W  G  S  E  R  E  D  P  C  T  S  G  T  K  A  *  R  I  V  V  P  Q  M  D  R  V  C  V  D  M  H  F  L  A  N  K  P  I  L  L  V  H  Q  L  L  N  G  C  V  Y  T  K  Q  R  L  K  L  G  C  K  Q  Y  S  W  E  S  N  T  A  A  *  I  F  L  L  Y  *  I  S  S  N  C  I  M </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02HBa0236E02.1" strand="+"/>
                <serials PGL_serial="7" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="20477" stop="20904"/>
                    <exon start="21088" stop="21210"/>
                    <exon start="21518" stop="21689"/>
                    <exon start="22414" stop="22451"/>
                    <exon start="22864" stop="23062"/>
                    <exon start="23245" stop="23397"/>
                    <exon start="23598" stop="23732"/>
                    <exon start="24189" stop="24266"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>1323</number_coding_nucleotides>
                  <number_encoded_amino_acids>441</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>SSLLSPVVFLTMAASSHSLASSACFSTTPARKFSGSDRFQLAKSLLCRKIPGFSGSVVCARRICSNYASSGDQSNYGKKLMDSIFVACTSVALSFSLYIADVDPASAFVVTSPRKLQTDELATVRLFQENTPSVVYITNLASRQDMFTLDVFEVPQGSGSGFVWDKNGNIVTNYHVIRGASDLRVTLADQTTYDAKVVGFDQDKDVAVLHIDAPKDKLRPIPIGVSADLLVGQKVFAIGNPFGLDHTLTTGVISGLRREINSAATGRPIQDVIQTDAAINPGNSGGPLLDSSGNLIGINTAIYSPSGASSGVGFSIPVDTVSGIVDQLVQFGKVTRPILGIKFAPDQSVEQLGVTGVLVLDAPPNGPAGKAGLLPTKRDSYGRLILGDIITSINGKKVSNGTDLYRILDQCKVGEKVIVEVLRGDQKEKIPVLLEPKPEES*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="2">
          <exon_coordinates>
            <exon e_start="20477" e_stop="20904"/>
            <exon e_start="21088" e_stop="21210"/>
            <exon e_start="21518" e_stop="21689"/>
            <exon e_start="22414" e_stop="22451"/>
            <exon e_start="22864" e_stop="23062"/>
            <exon e_start="23245" e_stop="23397"/>
            <exon e_start="23598" e_stop="23732"/>
            <exon e_start="24189" e_stop="24421"/>
            <exon e_start="24980" e_stop="25014"/>
            <exon e_start="25511" e_stop="25545"/>
            <exon e_start="25813" e_stop="25843"/>
            <exon e_start="26028" e_stop="26064"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.964" acc_prob="0.997" e_score="1.000"/>
          <exon-intron don_prob="0.997" acc_prob="0.000" e_score="1.000"/>
          <exon-intron don_prob="0.928" acc_prob="0.991" e_score="1.000"/>
          <exon-intron don_prob="0.968" acc_prob="0.886" e_score="1.000"/>
          <exon-intron don_prob="0.996" acc_prob="0.999" e_score="1.000"/>
          <exon-intron don_prob="1.000" acc_prob="0.908" e_score="1.000"/>
          <exon-intron don_prob="0.999" acc_prob="0.995" e_score="1.000"/>
          <exon-intron don_prob="0.000" acc_prob="0.000" e_score="1.000"/>
          <exon-intron don_prob="0.000" acc_prob="0.000" e_score="0.657"/>
          <exon-intron don_prob="0.000" acc_prob="0.419" e_score="0.771"/>
          <exon-intron don_prob="0.000" acc_prob="0.204" e_score="0.484"/>
          <exon-only e_score="0.541"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="20477" e_stop="20904" e_length="428"/>
          </exon>
          <intron i_serial="1" don_prob="0.964" acc_prob="0.997">
            <gDNA_intron_boundary i_start="20905" i_stop="21087" i_length="183"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="21088" e_stop="21210" e_length="123"/>
          </exon>
          <intron i_serial="2" don_prob="0.997" acc_prob="0.000">
            <gDNA_intron_boundary i_start="21211" i_stop="21517" i_length="307"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="21518" e_stop="21689" e_length="172"/>
          </exon>
          <intron i_serial="3" don_prob="0.928" acc_prob="0.991">
            <gDNA_intron_boundary i_start="21690" i_stop="22413" i_length="724"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="22414" e_stop="22451" e_length="38"/>
          </exon>
          <intron i_serial="4" don_prob="0.968" acc_prob="0.886">
            <gDNA_intron_boundary i_start="22452" i_stop="22863" i_length="412"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="22864" e_stop="23062" e_length="199"/>
          </exon>
          <intron i_serial="5" don_prob="0.996" acc_prob="0.999">
            <gDNA_intron_boundary i_start="23063" i_stop="23244" i_length="182"/>
          </intron>
          <exon e_serial="6" e_score="1.000">
            <gDNA_exon_boundary e_start="23245" e_stop="23397" e_length="153"/>
          </exon>
          <intron i_serial="6" don_prob="1.000" acc_prob="0.908">
            <gDNA_intron_boundary i_start="23398" i_stop="23597" i_length="200"/>
          </intron>
          <exon e_serial="7" e_score="1.000">
            <gDNA_exon_boundary e_start="23598" e_stop="23732" e_length="135"/>
          </exon>
          <intron i_serial="7" don_prob="0.999" acc_prob="0.995">
            <gDNA_intron_boundary i_start="23733" i_stop="24188" i_length="456"/>
          </intron>
          <exon e_serial="8" e_score="1.000">
            <gDNA_exon_boundary e_start="24189" e_stop="24421" e_length="233"/>
          </exon>
          <intron i_serial="8" don_prob="0.000" acc_prob="0.000">
            <gDNA_intron_boundary i_start="24422" i_stop="24979" i_length="558"/>
          </intron>
          <exon e_serial="9" e_score="0.657">
            <gDNA_exon_boundary e_start="24980" e_stop="25014" e_length="35"/>
          </exon>
          <intron i_serial="9" don_prob="0.000" acc_prob="0.000">
            <gDNA_intron_boundary i_start="25015" i_stop="25510" i_length="496"/>
          </intron>
          <exon e_serial="10" e_score="0.771">
            <gDNA_exon_boundary e_start="25511" e_stop="25545" e_length="35"/>
          </exon>
          <intron i_serial="10" don_prob="0.000" acc_prob="0.419">
            <gDNA_intron_boundary i_start="25546" i_stop="25812" i_length="267"/>
          </intron>
          <exon e_serial="11" e_score="0.484">
            <gDNA_exon_boundary e_start="25813" e_stop="25843" e_length="31"/>
          </exon>
          <intron i_serial="11" don_prob="0.000" acc_prob="0.204">
            <gDNA_intron_boundary i_start="25844" i_stop="26027" i_length="184"/>
          </intron>
          <exon e_serial="12" e_score="0.541">
            <gDNA_exon_boundary e_start="26028" e_stop="26064" e_length="37"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="20477" stop="20904"/>
              <exon start="21088" stop="21210"/>
              <exon start="21518" stop="21667"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E332335" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="20480" stop="20854"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E329180" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="20481" stop="20904"/>
              <exon start="21088" stop="21210"/>
              <exon start="21518" stop="21689"/>
              <exon start="22414" stop="22451"/>
              <exon start="22864" stop="22891"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E704574" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="20482" stop="20904"/>
              <exon start="21088" stop="21210"/>
              <exon start="21518" stop="21548"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E302347" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="20483" stop="20904"/>
              <exon start="21088" stop="21210"/>
              <exon start="21518" stop="21549"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E291953" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="20493" stop="20904"/>
              <exon start="21088" stop="21210"/>
              <exon start="21518" stop="21689"/>
              <exon start="22414" stop="22451"/>
              <exon start="22864" stop="22908"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E621415" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="20493" stop="20904"/>
              <exon start="21088" stop="21210"/>
              <exon start="21518" stop="21689"/>
              <exon start="22414" stop="22429"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E418571" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="20493" stop="20904"/>
              <exon start="21088" stop="21116"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E442314" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="20493" stop="20742"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E439642" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="20495" stop="20904"/>
              <exon start="21088" stop="21187"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E725724" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="20500" stop="20904"/>
              <exon start="21088" stop="21210"/>
              <exon start="21518" stop="21648"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E249718" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="20547" stop="20904"/>
              <exon start="21088" stop="21210"/>
              <exon start="21518" stop="21548"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E621090" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="20591" stop="20904"/>
              <exon start="21088" stop="21210"/>
              <exon start="21518" stop="21645"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E406320" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="20649" stop="20904"/>
              <exon start="21088" stop="21210"/>
              <exon start="21518" stop="21689"/>
              <exon start="22414" stop="22440"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E274855" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="20649" stop="20904"/>
              <exon start="21088" stop="21210"/>
              <exon start="21518" stop="21607"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E276746" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="21109" stop="21210"/>
              <exon start="21518" stop="21689"/>
              <exon start="22414" stop="22451"/>
              <exon start="22864" stop="23062"/>
              <exon start="23245" stop="23397"/>
              <exon start="23598" stop="23606"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E616284" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="21152" stop="21210"/>
              <exon start="21518" stop="21689"/>
              <exon start="22414" stop="22451"/>
              <exon start="22864" stop="23062"/>
              <exon start="23245" stop="23340"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E303366" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="21637" stop="21689"/>
              <exon start="22414" stop="22451"/>
              <exon start="22864" stop="23062"/>
              <exon start="23245" stop="23397"/>
              <exon start="23598" stop="23693"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E286262" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="21644" stop="21689"/>
              <exon start="22414" stop="22451"/>
              <exon start="22864" stop="23062"/>
              <exon start="23245" stop="23397"/>
              <exon start="23598" stop="23732"/>
              <exon start="24189" stop="24327"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E710799" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="24260" stop="24421"/>
              <exon start="24980" stop="25014"/>
              <exon start="25511" stop="25545"/>
              <exon start="25813" stop="25843"/>
              <exon start="26028" stop="26064"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E553344" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="7" AGS_serial="2" gDNA_strand="+"/>
          <translation>
            <gDNA_template>TCCTCTTTGCTCTCACCAGTTGTCTTCTTAACAATGGCTGCATCTTCACACTCCCTAGCTTCTTCTGCTTGCTTCTCCACAACTCCGGCACGGAAATTTTCCGGCTCAGATCGATTTCAACTTGCTAAGTCTTTACTCTGCCGGAAAATACCTGGTTTCTCCGGCAGTGTGGTCTGCGCTCGGCGTATTTGCTCTAACTATGCCTCTTCCGGTGACCAGTCCAACTACGGGAAGAAGCTTATGGATAGTATTTTTGTGGCATGCACTTCCGTTGCCTTGTCTTTCTCTCTCTATATAGCAGACGTTGACCCTGCCTCGGCTTTTGTAGTCACTTCACCCAGGAAATTGCAGACTGATGAACTTGCTACTGTTCGTCTCTTCCAAGAGAATACACCTTCCGTTGTGTATATTACTAATCTTGCTTCCAG : GCAGGATATGTTCACACTGGATGTATTTGAGGTGCCTCAAGGGTCTGGGTCAGGCTTCGTCTGGGATAAAAATGGAAATATTGTTACTAATTATCATGTGATTCGAGGTGCTTCTGATCTCAG : AGTGACTCTTGCTGATCAAACTACTTATGATGCAAAAGTTGTTGGATTTGACCAAGATAAAGATGTTGCTGTGTTGCATATTGATGCACCAAAAGACAAGTTGCGACCTATACCAATTGGCGTATCGGCAGACTTGCTCGTTGGTCAAAAAGTATTTGCTATTGGAAATCCA : TTTGGACTTGATCATACACTCACCACTGGTGTAATCAG : TGGGCTTAGGAGAGAAATCAATTCTGCGGCTACTGGCCGCCCAATCCAAGATGTTATTCAGACAGATGCAGCAATCAATCCTGGTAACAGTGGAGGGCCACTTCTAGATAGTTCTGGAAATCTTATTGGAATAAATACTGCTATATATTCTCCTTCCGGTGCATCATCAGGTGTTGGATTTTCAATTCCAGTTGATACT : GTCAGTGGCATTGTTGATCAGTTAGTGCAGTTTGGGAAAGTCACAAGGCCAATTTTGGGCATAAAGTTTGCACCTGATCAGTCCGTTGAGCAACTGGGAGTCACTGGAGTACTTGTCCTGGATGCTCCTCCAAATGGTCCTGCAGGCAAAGCA : GGTCTTCTACCTACTAAACGTGATTCCTACGGAAGACTTATTTTAGGTGATATAATCACATCTATAAATGGAAAGAAGGTCTCTAATGGCACCGACTTGTACAGAATTCTTGACCAATGCAAAGTTGGAGAAAAG : GTAATTGTGGAAGTGCTGCGTGGGGATCAGAAAGAGAAGATCCCTGTACTTCTGGAACCAAAGCCTGAAGAATCGTAGTTCCTCAAATGGATAGAGTATGTGTTGATATGCATTTCTTGGCGAACAAGCCCATATTATTAGTGCATCAATTGTTGAATGGTTGTGTATATACAAAACAACGCTTAAAACTAGGGTGCAAGCAATATAGTTGGGAGTCTAACACTGCTGCCTAA : AAAGAACAAATTGATAAAGAAATGACAACAAAGAA : AAAAAAGAAAAAAAAAAACAGAAACCAAACATAAC : GGAATCGTACGAGTCCATATAATCCCCCAGA : GGACGGCCTTAGTATAAATCCGAAGTGCATTTTCACA</gDNA_template>
            <first_frame> S  S  L  L  S  P  V  V  F  L  T  M  A  A  S  S  H  S  L  A  S  S  A  C  F  S  T  T  P  A  R  K  F  S  G  S  D  R  F  Q  L  A  K  S  L  L  C  R  K  I  P  G  F  S  G  S  V  V  C  A  R  R  I  C  S  N  Y  A  S  S  G  D  Q  S  N  Y  G  K  K  L  M  D  S  I  F  V  A  C  T  S  V  A  L  S  F  S  L  Y  I  A  D  V  D  P  A  S  A  F  V  V  T  S  P  R  K  L  Q  T  D  E  L  A  T  V  R  L  F  Q  E  N  T  P  S  V  V  Y  I  T  N  L  A  S  R :   Q  D  M  F  T  L  D  V  F  E  V  P  Q  G  S  G  S  G  F  V  W  D  K  N  G  N  I  V  T  N  Y  H  V  I  R  G  A  S  D  L  R :   V  T  L  A  D  Q  T  T  Y  D  A  K  V  V  G  F  D  Q  D  K  D  V  A  V  L  H  I  D  A  P  K  D  K  L  R  P  I  P  I  G  V  S  A  D  L  L  V  G  Q  K  V  F  A  I  G  N  P  :  F  G  L  D  H  T  L  T  T  G  V  I  S :   G  L  R  R  E  I  N  S  A  A  T  G  R  P  I  Q  D  V  I  Q  T  D  A  A  I  N  P  G  N  S  G  G  P  L  L  D  S  S  G  N  L  I  G  I  N  T  A  I  Y  S  P  S  G  A  S  S  G  V  G  F  S  I  P  V  D  T  :  V  S  G  I  V  D  Q  L  V  Q  F  G  K  V  T  R  P  I  L  G  I  K  F  A  P  D  Q  S  V  E  Q  L  G  V  T  G  V  L  V  L  D  A  P  P  N  G  P  A  G  K  A  :  G  L  L  P  T  K  R  D  S  Y  G  R  L  I  L  G  D  I  I  T  S  I  N  G  K  K  V  S  N  G  T  D  L  Y  R  I  L  D  Q  C  K  V  G  E  K  :  V  I  V  E  V  L  R  G  D  Q  K  E  K  I  P  V  L  L  E  P  K  P  E  E  S  *  F  L  K  W  I  E  Y  V  L  I  C  I  S  W  R  T  S  P  Y  Y  *  C  I  N  C  *  M  V  V  Y  I  Q  N  N  A  *  N  *  G  A  S  N  I  V  G  S  L  T  L  L  P  K :   K  N  K  L  I  K  K  *  Q  Q  R   : K  K  R  K  K  K  T  E  T  K  H  N  :  G  I  V  R  V  H  I  I  P  Q   : R  T  A  L  V  *  I  R  S  A  F  S   </first_frame>
            <second_frame>  P  L  C  S  H  Q  L  S  S  *  Q  W  L  H  L  H  T  P  *  L  L  L  L  A  S  P  Q  L  R  H  G  N  F  P  A  Q  I  D  F  N  L  L  S  L  Y  S  A  G  K  Y  L  V  S  P  A  V  W  S  A  L  G  V  F  A  L  T  M  P  L  P  V  T  S  P  T  T  G  R  S  L  W  I  V  F  L  W  H  A  L  P  L  P  C  L  S  L  S  I  *  Q  T  L  T  L  P  R  L  L  *  S  L  H  P  G  N  C  R  L  M  N  L  L  L  F  V  S  S  K  R  I  H  L  P  L  C  I  L  L  I  L  L  P   : G  R  I  C  S  H  W  M  Y  L  R  C  L  K  G  L  G  Q  A  S  S  G  I  K  M  E  I  L  L  L  I  I  M  *  F  E  V  L  L  I  S   : E  *  L  L  L  I  K  L  L  M  M  Q  K  L  L  D  L  T  K  I  K  M  L  L  C  C  I  L  M  H  Q  K  T  S  C  D  L  Y  Q  L  A  Y  R  Q  T  C  S  L  V  K  K  Y  L  L  L  E  I  H :   L  D  L  I  I  H  S  P  L  V  *  S   : V  G  L  G  E  K  S  I  L  R  L  L  A  A  Q  S  K  M  L  F  R  Q  M  Q  Q  S  I  L  V  T  V  E  G  H  F  *  I  V  L  E  I  L  L  E  *  I  L  L  Y  I  L  L  P  V  H  H  Q  V  L  D  F  Q  F  Q  L  I  L :   S  V  A  L  L  I  S  *  C  S  L  G  K  S  Q  G  Q  F  W  A  *  S  L  H  L  I  S  P  L  S  N  W  E  S  L  E  Y  L  S  W  M  L  L  Q  M  V  L  Q  A  K  Q :   V  F  Y  L  L  N  V  I  P  T  E  D  L  F  *  V  I  *  S  H  L  *  M  E  R  R  S  L  M  A  P  T  C  T  E  F  L  T  N  A  K  L  E  K  R :   *  L  W  K  C  C  V  G  I  R  K  R  R  S  L  Y  F  W  N  Q  S  L  K  N  R  S  S  S  N  G  *  S  M  C  *  Y  A  F  L  G  E  Q  A  H  I  I  S  A  S  I  V  E  W  L  C  I  Y  K  T  T  L  K  T  R  V  Q  A  I  *  L  G  V  *  H  C  C  L   : K  R  T  N  *  *  R  N  D  N  K  E  :  K  K  E  K  K  K  Q  K  P  N  I  T :   E  S  Y  E  S  I  *  S  P  R  :  G  R  P  *  Y  K  S  E  V  H  F  H  </second_frame>
            <third_frame>   L  F  A  L  T  S  C  L  L  N  N  G  C  I  F  T  L  P  S  F  F  C  L  L  L  H  N  S  G  T  E  I  F  R  L  R  S  I  S  T  C  *  V  F  T  L  P  E  N  T  W  F  L  R  Q  C  G  L  R  S  A  Y  L  L  *  L  C  L  F  R  *  P  V  Q  L  R  E  E  A  Y  G  *  Y  F  C  G  M  H  F  R  C  L  V  F  L  S  L  Y  S  R  R  *  P  C  L  G  F  C  S  H  F  T  Q  E  I  A  D  *  *  T  C  Y  C  S  S  L  P  R  E  Y  T  F  R  C  V  Y  Y  *  S  C  F  Q  :  A  G  Y  V  H  T  G  C  I  *  G  A  S  R  V  W  V  R  L  R  L  G  *  K  W  K  Y  C  Y  *  L  S  C  D  S  R  C  F  *  S  Q  :  S  D  S  C  *  S  N  Y  L  *  C  K  S  C  W  I  *  P  R  *  R  C  C  C  V  A  Y  *  C  T  K  R  Q  V  A  T  Y  T  N  W  R  I  G  R  L  A  R  W  S  K  S  I  C  Y  W  K  S   : I  W  T  *  S  Y  T  H  H  W  C  N  Q  :  W  A  *  E  R  N  Q  F  C  G  Y  W  P  P  N  P  R  C  Y  S  D  R  C  S  N  Q  S  W  *  Q  W  R  A  T  S  R  *  F  W  K  S  Y  W  N  K  Y  C  Y  I  F  S  F  R  C  I  I  R  C  W  I  F  N  S  S  *  Y   : C  Q  W  H  C  *  S  V  S  A  V  W  E  S  H  K  A  N  F  G  H  K  V  C  T  *  S  V  R  *  A  T  G  S  H  W  S  T  C  P  G  C  S  S  K  W  S  C  R  Q  S   : R  S  S  T  Y  *  T  *  F  L  R  K  T  Y  F  R  *  Y  N  H  I  Y  K  W  K  E  G  L  *  W  H  R  L  V  Q  N  S  *  P  M  Q  S  W  R  K   : G  N  C  G  S  A  A  W  G  S  E  R  E  D  P  C  T  S  G  T  K  A  *  R  I  V  V  P  Q  M  D  R  V  C  V  D  M  H  F  L  A  N  K  P  I  L  L  V  H  Q  L  L  N  G  C  V  Y  T  K  Q  R  L  K  L  G  C  K  Q  Y  S  W  E  S  N  T  A  A  *  :  K  E  Q  I  D  K  E  M  T  T  K  K :   K  K  K  K  K  N  R  N  Q  T  *   : R  N  R  T  S  P  Y  N  P  P  E :   D  G  L  S  I  N  P  K  C  I  F  T </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02HBa0236E02.1" strand="+"/>
                <serials PGL_serial="7" AGS_serial="2" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="20477" stop="20904"/>
                    <exon start="21088" stop="21210"/>
                    <exon start="21518" stop="21689"/>
                    <exon start="22414" stop="22451"/>
                    <exon start="22864" stop="23062"/>
                    <exon start="23245" stop="23397"/>
                    <exon start="23598" stop="23732"/>
                    <exon start="24189" stop="24266"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>1323</number_coding_nucleotides>
                  <number_encoded_amino_acids>441</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>SSLLSPVVFLTMAASSHSLASSACFSTTPARKFSGSDRFQLAKSLLCRKIPGFSGSVVCARRICSNYASSGDQSNYGKKLMDSIFVACTSVALSFSLYIADVDPASAFVVTSPRKLQTDELATVRLFQENTPSVVYITNLASRQDMFTLDVFEVPQGSGSGFVWDKNGNIVTNYHVIRGASDLRVTLADQTTYDAKVVGFDQDKDVAVLHIDAPKDKLRPIPIGVSADLLVGQKVFAIGNPFGLDHTLTTGVISGLRREINSAATGRPIQDVIQTDAAINPGNSGGPLLDSSGNLIGINTAIYSPSGASSGVGFSIPVDTVSGIVDQLVQFGKVTRPILGIKFAPDQSVEQLGVTGVLVLDAPPNGPAGKAGLLPTKRDSYGRLILGDIITSINGKKVSNGTDLYRILDQCKVGEKVIVEVLRGDQKEKIPVLLEPKPEES*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="3">
          <exon_coordinates>
            <exon e_start="20477" e_stop="20904"/>
            <exon e_start="21088" e_stop="21210"/>
            <exon e_start="21518" e_stop="21730"/>
            <exon e_start="22414" e_stop="22451"/>
            <exon e_start="22864" e_stop="23062"/>
            <exon e_start="23245" e_stop="23397"/>
            <exon e_start="23598" e_stop="23732"/>
            <exon e_start="24189" e_stop="24460"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.964" acc_prob="0.997" e_score="1.000"/>
          <exon-intron don_prob="0.997" acc_prob="0.000" e_score="1.000"/>
          <exon-intron don_prob="0.779" acc_prob="0.991" e_score="1.000"/>
          <exon-intron don_prob="0.968" acc_prob="0.886" e_score="1.000"/>
          <exon-intron don_prob="0.996" acc_prob="0.999" e_score="0.990"/>
          <exon-intron don_prob="1.000" acc_prob="0.908" e_score="0.987"/>
          <exon-intron don_prob="0.999" acc_prob="0.995" e_score="1.000"/>
          <exon-only e_score="0.993"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="20477" e_stop="20904" e_length="428"/>
          </exon>
          <intron i_serial="1" don_prob="0.964" acc_prob="0.997">
            <gDNA_intron_boundary i_start="20905" i_stop="21087" i_length="183"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="21088" e_stop="21210" e_length="123"/>
          </exon>
          <intron i_serial="2" don_prob="0.997" acc_prob="0.000">
            <gDNA_intron_boundary i_start="21211" i_stop="21517" i_length="307"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="21518" e_stop="21730" e_length="213"/>
          </exon>
          <intron i_serial="3" don_prob="0.779" acc_prob="0.991">
            <gDNA_intron_boundary i_start="21731" i_stop="22413" i_length="683"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="22414" e_stop="22451" e_length="38"/>
          </exon>
          <intron i_serial="4" don_prob="0.968" acc_prob="0.886">
            <gDNA_intron_boundary i_start="22452" i_stop="22863" i_length="412"/>
          </intron>
          <exon e_serial="5" e_score="0.990">
            <gDNA_exon_boundary e_start="22864" e_stop="23062" e_length="199"/>
          </exon>
          <intron i_serial="5" don_prob="0.996" acc_prob="0.999">
            <gDNA_intron_boundary i_start="23063" i_stop="23244" i_length="182"/>
          </intron>
          <exon e_serial="6" e_score="0.987">
            <gDNA_exon_boundary e_start="23245" e_stop="23397" e_length="153"/>
          </exon>
          <intron i_serial="6" don_prob="1.000" acc_prob="0.908">
            <gDNA_intron_boundary i_start="23398" i_stop="23597" i_length="200"/>
          </intron>
          <exon e_serial="7" e_score="1.000">
            <gDNA_exon_boundary e_start="23598" e_stop="23732" e_length="135"/>
          </exon>
          <intron i_serial="7" don_prob="0.999" acc_prob="0.995">
            <gDNA_intron_boundary i_start="23733" i_stop="24188" i_length="456"/>
          </intron>
          <exon e_serial="8" e_score="0.993">
            <gDNA_exon_boundary e_start="24189" e_stop="24460" e_length="272"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="20477" stop="20904"/>
              <exon start="21088" stop="21210"/>
              <exon start="21518" stop="21667"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E332335" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="20480" stop="20854"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E329180" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="20482" stop="20904"/>
              <exon start="21088" stop="21210"/>
              <exon start="21518" stop="21548"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E302347" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="20483" stop="20904"/>
              <exon start="21088" stop="21210"/>
              <exon start="21518" stop="21549"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E291953" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="20493" stop="20904"/>
              <exon start="21088" stop="21116"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E442314" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="20493" stop="20742"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E439642" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="20495" stop="20904"/>
              <exon start="21088" stop="21187"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E725724" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="20500" stop="20904"/>
              <exon start="21088" stop="21210"/>
              <exon start="21518" stop="21648"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E249718" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="20547" stop="20904"/>
              <exon start="21088" stop="21210"/>
              <exon start="21518" stop="21548"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E621090" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="20591" stop="20904"/>
              <exon start="21088" stop="21210"/>
              <exon start="21518" stop="21645"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E406320" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="20649" stop="20904"/>
              <exon start="21088" stop="21210"/>
              <exon start="21518" stop="21607"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E276746" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="20715" stop="20904"/>
              <exon start="21088" stop="21210"/>
              <exon start="21518" stop="21730"/>
              <exon start="22414" stop="22437"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E272938" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="22414" stop="22451"/>
              <exon start="22864" stop="23062"/>
              <exon start="23245" stop="23397"/>
              <exon start="23598" stop="23732"/>
              <exon start="24189" stop="24439"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E418572" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="23319" stop="23397"/>
              <exon start="23598" stop="23732"/>
              <exon start="24189" stop="24460"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E278984" strand="-"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="7" AGS_serial="3" gDNA_strand="+"/>
          <translation>
            <gDNA_template>TCCTCTTTGCTCTCACCAGTTGTCTTCTTAACAATGGCTGCATCTTCACACTCCCTAGCTTCTTCTGCTTGCTTCTCCACAACTCCGGCACGGAAATTTTCCGGCTCAGATCGATTTCAACTTGCTAAGTCTTTACTCTGCCGGAAAATACCTGGTTTCTCCGGCAGTGTGGTCTGCGCTCGGCGTATTTGCTCTAACTATGCCTCTTCCGGTGACCAGTCCAACTACGGGAAGAAGCTTATGGATAGTATTTTTGTGGCATGCACTTCCGTTGCCTTGTCTTTCTCTCTCTATATAGCAGACGTTGACCCTGCCTCGGCTTTTGTAGTCACTTCACCCAGGAAATTGCAGACTGATGAACTTGCTACTGTTCGTCTCTTCCAAGAGAATACACCTTCCGTTGTGTATATTACTAATCTTGCTTCCAG : GCAGGATATGTTCACACTGGATGTATTTGAGGTGCCTCAAGGGTCTGGGTCAGGCTTCGTCTGGGATAAAAATGGAAATATTGTTACTAATTATCATGTGATTCGAGGTGCTTCTGATCTCAG : AGTGACTCTTGCTGATCAAACTACTTATGATGCAAAAGTTGTTGGATTTGACCAAGATAAAGATGTTGCTGTGTTGCATATTGATGCACCAAAAGACAAGTTGCGACCTATACCAATTGGCGTATCGGCAGACTTGCTCGTTGGTCAAAAAGTATTTGCTATTGGAAATCCAGTATGTGACGAAATACAAACCTGCTAGAGAATTCTGTTCAT : TTTGGACTTGATCATACACTCACCACTGGTGTAATCAG : TGGGCTTAGGAGAGAAATCAATTCTGCGGCTACTGGCCGCCCAATCCAAGATGTTATTCAGACAGATGCAGCAATCAATCCTGGTAACAGTGGAGGGCCACTTCTAGATAGTTCTGGAAATCTTATTGGAATAAATACTGCTATATATTCTCCTTCCGGTGCATCATCAGGTGTTGGATTTTCAATTCCAGTTGATACT : GTCAGTGGCATTGTTGATCAGTTAGTGCAGTTTGGGAAAGTCACAAGGCCAATTTTGGGCATAAAGTTTGCACCTGATCAGTCCGTTGAGCAACTGGGAGTCACTGGAGTACTTGTCCTGGATGCTCCTCCAAATGGTCCTGCAGGCAAAGCA : GGTCTTCTACCTACTAAACGTGATTCCTACGGAAGACTTATTTTAGGTGATATAATCACATCTATAAATGGAAAGAAGGTCTCTAATGGCACCGACTTGTACAGAATTCTTGACCAATGCAAAGTTGGAGAAAAG : GTAATTGTGGAAGTGCTGCGTGGGGATCAGAAAGAGAAGATCCCTGTACTTCTGGAACCAAAGCCTGAAGAATCGTAGTTCCTCAAATGGATAGAGTATGTGTTGATATGCATTTCTTGGCGAACAAGCCCATATTATTAGTGCATCAATTGTTGAATGGTTGTGTATATACAAAACAACGCTTAAAACTAGGGTGCAAGCAATATAGTTGGGAGTCTAACACTGCTGCCTAAATATTTCTACTATATTAGATATCCTCAAATTGTATAATG</gDNA_template>
            <first_frame> S  S  L  L  S  P  V  V  F  L  T  M  A  A  S  S  H  S  L  A  S  S  A  C  F  S  T  T  P  A  R  K  F  S  G  S  D  R  F  Q  L  A  K  S  L  L  C  R  K  I  P  G  F  S  G  S  V  V  C  A  R  R  I  C  S  N  Y  A  S  S  G  D  Q  S  N  Y  G  K  K  L  M  D  S  I  F  V  A  C  T  S  V  A  L  S  F  S  L  Y  I  A  D  V  D  P  A  S  A  F  V  V  T  S  P  R  K  L  Q  T  D  E  L  A  T  V  R  L  F  Q  E  N  T  P  S  V  V  Y  I  T  N  L  A  S  R :   Q  D  M  F  T  L  D  V  F  E  V  P  Q  G  S  G  S  G  F  V  W  D  K  N  G  N  I  V  T  N  Y  H  V  I  R  G  A  S  D  L  R :   V  T  L  A  D  Q  T  T  Y  D  A  K  V  V  G  F  D  Q  D  K  D  V  A  V  L  H  I  D  A  P  K  D  K  L  R  P  I  P  I  G  V  S  A  D  L  L  V  G  Q  K  V  F  A  I  G  N  P  V  C  D  E  I  Q  T  C  *  R  I  L  F  I :   L  D  L  I  I  H  S  P  L  V  *  S   : V  G  L  G  E  K  S  I  L  R  L  L  A  A  Q  S  K  M  L  F  R  Q  M  Q  Q  S  I  L  V  T  V  E  G  H  F  *  I  V  L  E  I  L  L  E  *  I  L  L  Y  I  L  L  P  V  H  H  Q  V  L  D  F  Q  F  Q  L  I  L :   S  V  A  L  L  I  S  *  C  S  L  G  K  S  Q  G  Q  F  W  A  *  S  L  H  L  I  S  P  L  S  N  W  E  S  L  E  Y  L  S  W  M  L  L  Q  M  V  L  Q  A  K  Q :   V  F  Y  L  L  N  V  I  P  T  E  D  L  F  *  V  I  *  S  H  L  *  M  E  R  R  S  L  M  A  P  T  C  T  E  F  L  T  N  A  K  L  E  K  R :   *  L  W  K  C  C  V  G  I  R  K  R  R  S  L  Y  F  W  N  Q  S  L  K  N  R  S  S  S  N  G  *  S  M  C  *  Y  A  F  L  G  E  Q  A  H  I  I  S  A  S  I  V  E  W  L  C  I  Y  K  T  T  L  K  T  R  V  Q  A  I  *  L  G  V  *  H  C  C  L  N  I  S  T  I  L  D  I  L  K  L  Y  N  </first_frame>
            <second_frame>  P  L  C  S  H  Q  L  S  S  *  Q  W  L  H  L  H  T  P  *  L  L  L  L  A  S  P  Q  L  R  H  G  N  F  P  A  Q  I  D  F  N  L  L  S  L  Y  S  A  G  K  Y  L  V  S  P  A  V  W  S  A  L  G  V  F  A  L  T  M  P  L  P  V  T  S  P  T  T  G  R  S  L  W  I  V  F  L  W  H  A  L  P  L  P  C  L  S  L  S  I  *  Q  T  L  T  L  P  R  L  L  *  S  L  H  P  G  N  C  R  L  M  N  L  L  L  F  V  S  S  K  R  I  H  L  P  L  C  I  L  L  I  L  L  P   : G  R  I  C  S  H  W  M  Y  L  R  C  L  K  G  L  G  Q  A  S  S  G  I  K  M  E  I  L  L  L  I  I  M  *  F  E  V  L  L  I  S   : E  *  L  L  L  I  K  L  L  M  M  Q  K  L  L  D  L  T  K  I  K  M  L  L  C  C  I  L  M  H  Q  K  T  S  C  D  L  Y  Q  L  A  Y  R  Q  T  C  S  L  V  K  K  Y  L  L  L  E  I  Q  Y  V  T  K  Y  K  P  A  R  E  F  C  S   : F  W  T  *  S  Y  T  H  H  W  C  N  Q  :  W  A  *  E  R  N  Q  F  C  G  Y  W  P  P  N  P  R  C  Y  S  D  R  C  S  N  Q  S  W  *  Q  W  R  A  T  S  R  *  F  W  K  S  Y  W  N  K  Y  C  Y  I  F  S  F  R  C  I  I  R  C  W  I  F  N  S  S  *  Y   : C  Q  W  H  C  *  S  V  S  A  V  W  E  S  H  K  A  N  F  G  H  K  V  C  T  *  S  V  R  *  A  T  G  S  H  W  S  T  C  P  G  C  S  S  K  W  S  C  R  Q  S   : R  S  S  T  Y  *  T  *  F  L  R  K  T  Y  F  R  *  Y  N  H  I  Y  K  W  K  E  G  L  *  W  H  R  L  V  Q  N  S  *  P  M  Q  S  W  R  K   : G  N  C  G  S  A  A  W  G  S  E  R  E  D  P  C  T  S  G  T  K  A  *  R  I  V  V  P  Q  M  D  R  V  C  V  D  M  H  F  L  A  N  K  P  I  L  L  V  H  Q  L  L  N  G  C  V  Y  T  K  Q  R  L  K  L  G  C  K  Q  Y  S  W  E  S  N  T  A  A  *  I  F  L  L  Y  *  I  S  S  N  C  I  M </second_frame>
            <third_frame>   L  F  A  L  T  S  C  L  L  N  N  G  C  I  F  T  L  P  S  F  F  C  L  L  L  H  N  S  G  T  E  I  F  R  L  R  S  I  S  T  C  *  V  F  T  L  P  E  N  T  W  F  L  R  Q  C  G  L  R  S  A  Y  L  L  *  L  C  L  F  R  *  P  V  Q  L  R  E  E  A  Y  G  *  Y  F  C  G  M  H  F  R  C  L  V  F  L  S  L  Y  S  R  R  *  P  C  L  G  F  C  S  H  F  T  Q  E  I  A  D  *  *  T  C  Y  C  S  S  L  P  R  E  Y  T  F  R  C  V  Y  Y  *  S  C  F  Q  :  A  G  Y  V  H  T  G  C  I  *  G  A  S  R  V  W  V  R  L  R  L  G  *  K  W  K  Y  C  Y  *  L  S  C  D  S  R  C  F  *  S  Q  :  S  D  S  C  *  S  N  Y  L  *  C  K  S  C  W  I  *  P  R  *  R  C  C  C  V  A  Y  *  C  T  K  R  Q  V  A  T  Y  T  N  W  R  I  G  R  L  A  R  W  S  K  S  I  C  Y  W  K  S  S  M  *  R  N  T  N  L  L  E  N  S  V  H  :  F  G  L  D  H  T  L  T  T  G  V  I  S :   G  L  R  R  E  I  N  S  A  A  T  G  R  P  I  Q  D  V  I  Q  T  D  A  A  I  N  P  G  N  S  G  G  P  L  L  D  S  S  G  N  L  I  G  I  N  T  A  I  Y  S  P  S  G  A  S  S  G  V  G  F  S  I  P  V  D  T  :  V  S  G  I  V  D  Q  L  V  Q  F  G  K  V  T  R  P  I  L  G  I  K  F  A  P  D  Q  S  V  E  Q  L  G  V  T  G  V  L  V  L  D  A  P  P  N  G  P  A  G  K  A  :  G  L  L  P  T  K  R  D  S  Y  G  R  L  I  L  G  D  I  I  T  S  I  N  G  K  K  V  S  N  G  T  D  L  Y  R  I  L  D  Q  C  K  V  G  E  K  :  V  I  V  E  V  L  R  G  D  Q  K  E  K  I  P  V  L  L  E  P  K  P  E  E  S  *  F  L  K  W  I  E  Y  V  L  I  C  I  S  W  R  T  S  P  Y  Y  *  C  I  N  C  *  M  V  V  Y  I  Q  N  N  A  *  N  *  G  A  S  N  I  V  G  S  L  T  L  L  P  K  Y  F  Y  Y  I  R  Y  P  Q  I  V  *   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02HBa0236E02.1" strand="+"/>
                <serials PGL_serial="7" AGS_serial="3" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="20477" stop="20904"/>
                    <exon start="21088" stop="21210"/>
                    <exon start="21518" stop="21716"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>747</number_coding_nucleotides>
                  <number_encoded_amino_acids>249</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>SSLLSPVVFLTMAASSHSLASSACFSTTPARKFSGSDRFQLAKSLLCRKIPGFSGSVVCARRICSNYASSGDQSNYGKKLMDSIFVACTSVALSFSLYIADVDPASAFVVTSPRKLQTDELATVRLFQENTPSVVYITNLASRQDMFTLDVFEVPQGSGSGFVWDKNGNIVTNYHVIRGASDLRVTLADQTTYDAKVVGFDQDKDVAVLHIDAPKDKLRPIPIGVSADLLVGQKVFAIGNPVCDEIQTC*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C02HBa0236E02.1" strand="+"/>
                <serials PGL_serial="7" AGS_serial="3" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="21698" stop="21730"/>
                    <exon start="22414" stop="22451"/>
                    <exon start="22864" stop="23062"/>
                    <exon start="23245" stop="23397"/>
                    <exon start="23598" stop="23732"/>
                    <exon start="24189" stop="24266"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>633</number_coding_nucleotides>
                  <number_encoded_amino_acids>211</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>RNTNLLENSVHFGLDHTLTTGVISGLRREINSAATGRPIQDVIQTDAAINPGNSGGPLLDSSGNLIGINTAIYSPSGASSGVGFSIPVDTVSGIVDQLVQFGKVTRPILGIKFAPDQSVEQLGVTGVLVLDAPPNGPAGKAGLLPTKRDSYGRLILGDIITSINGKKVSNGTDLYRILDQCKVGEKVIVEVLRGDQKEKIPVLLEPKPEES*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="4">
          <exon_coordinates>
            <exon e_start="20479" e_stop="20904"/>
            <exon e_start="21088" e_stop="21210"/>
            <exon e_start="21518" e_stop="21555"/>
            <exon e_start="23034" e_stop="23062"/>
            <exon e_start="23245" e_stop="23397"/>
            <exon e_start="23598" e_stop="23732"/>
            <exon e_start="24189" e_stop="24460"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.964" acc_prob="0.997" e_score="1.000"/>
          <exon-intron don_prob="0.997" acc_prob="0.000" e_score="1.000"/>
          <exon-intron don_prob="0.000" acc_prob="0.463" e_score="1.000"/>
          <exon-intron don_prob="0.996" acc_prob="0.999" e_score="0.966"/>
          <exon-intron don_prob="1.000" acc_prob="0.908" e_score="1.000"/>
          <exon-intron don_prob="0.999" acc_prob="0.995" e_score="1.000"/>
          <exon-only e_score="0.993"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="20479" e_stop="20904" e_length="426"/>
          </exon>
          <intron i_serial="1" don_prob="0.964" acc_prob="0.997">
            <gDNA_intron_boundary i_start="20905" i_stop="21087" i_length="183"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="21088" e_stop="21210" e_length="123"/>
          </exon>
          <intron i_serial="2" don_prob="0.997" acc_prob="0.000">
            <gDNA_intron_boundary i_start="21211" i_stop="21517" i_length="307"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="21518" e_stop="21555" e_length="38"/>
          </exon>
          <intron i_serial="3" don_prob="0.000" acc_prob="0.463">
            <gDNA_intron_boundary i_start="21556" i_stop="23033" i_length="1478"/>
          </intron>
          <exon e_serial="4" e_score="0.966">
            <gDNA_exon_boundary e_start="23034" e_stop="23062" e_length="29"/>
          </exon>
          <intron i_serial="4" don_prob="0.996" acc_prob="0.999">
            <gDNA_intron_boundary i_start="23063" i_stop="23244" i_length="182"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="23245" e_stop="23397" e_length="153"/>
          </exon>
          <intron i_serial="5" don_prob="1.000" acc_prob="0.908">
            <gDNA_intron_boundary i_start="23398" i_stop="23597" i_length="200"/>
          </intron>
          <exon e_serial="6" e_score="1.000">
            <gDNA_exon_boundary e_start="23598" e_stop="23732" e_length="135"/>
          </exon>
          <intron i_serial="6" don_prob="0.999" acc_prob="0.995">
            <gDNA_intron_boundary i_start="23733" i_stop="24188" i_length="456"/>
          </intron>
          <exon e_serial="7" e_score="0.993">
            <gDNA_exon_boundary e_start="24189" e_stop="24460" e_length="272"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="20479" stop="20904"/>
              <exon start="21088" stop="21210"/>
              <exon start="21518" stop="21555"/>
              <exon start="23034" stop="23062"/>
              <exon start="23245" stop="23397"/>
              <exon start="23598" stop="23686"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E729683" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="20480" stop="20854"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E329180" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="20482" stop="20904"/>
              <exon start="21088" stop="21210"/>
              <exon start="21518" stop="21548"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E302347" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="20483" stop="20904"/>
              <exon start="21088" stop="21210"/>
              <exon start="21518" stop="21549"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E291953" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="20493" stop="20904"/>
              <exon start="21088" stop="21116"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E442314" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="20493" stop="20742"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E439642" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="20495" stop="20904"/>
              <exon start="21088" stop="21187"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E725724" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="20547" stop="20904"/>
              <exon start="21088" stop="21210"/>
              <exon start="21518" stop="21548"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E621090" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="23319" stop="23397"/>
              <exon start="23598" stop="23732"/>
              <exon start="24189" stop="24460"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E278984" strand="-"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="7" AGS_serial="4" gDNA_strand="+"/>
          <translation>
            <gDNA_template>CTCTTTGCTCTCACCAGTTGTCTTCTTAACAATGGCTGCATCTTCACACTCCCTAGCTTCTTCTGCTTGCTTCTCCACAACTCCGGCACGGAAATTTTCCGGCTCAGATCGATTTCAACTTGCTAAGTCTTTACTCTGCCGGAAAATACCTGGTTTCTCCGGCAGTGTGGTCTGCGCTCGGCGTATTTGCTCTAACTATGCCTCTTCCGGTGACCAGTCCAACTACGGGAAGAAGCTTATGGATAGTATTTTTGTGGCATGCACTTCCGTTGCCTTGTCTTTCTCTCTCTATATAGCAGACGTTGACCCTGCCTCGGCTTTTGTAGTCACTTCACCCAGGAAATTGCAGACTGATGAACTTGCTACTGTTCGTCTCTTCCAAGAGAATACACCTTCCGTTGTGTATATTACTAATCTTGCTTCCAG : GCAGGATATGTTCACACTGGATGTATTTGAGGTGCCTCAAGGGTCTGGGTCAGGCTTCGTCTGGGATAAAAATGGAAATATTGTTACTAATTATCATGTGATTCGAGGTGCTTCTGATCTCAG : AGTGACTCTTGCTGATCAAACTACTTATGATGCAAAAG : GTGTTGGATTTTCAATTCCAGTTGATACT : GTCAGTGGCATTGTTGATCAGTTAGTGCAGTTTGGGAAAGTCACAAGGCCAATTTTGGGCATAAAGTTTGCACCTGATCAGTCCGTTGAGCAACTGGGAGTCACTGGAGTACTTGTCCTGGATGCTCCTCCAAATGGTCCTGCAGGCAAAGCA : GGTCTTCTACCTACTAAACGTGATTCCTACGGAAGACTTATTTTAGGTGATATAATCACATCTATAAATGGAAAGAAGGTCTCTAATGGCACCGACTTGTACAGAATTCTTGACCAATGCAAAGTTGGAGAAAAG : GTAATTGTGGAAGTGCTGCGTGGGGATCAGAAAGAGAAGATCCCTGTACTTCTGGAACCAAAGCCTGAAGAATCGTAGTTCCTCAAATGGATAGAGTATGTGTTGATATGCATTTCTTGGCGAACAAGCCCATATTATTAGTGCATCAATTGTTGAATGGTTGTGTATATACAAAACAACGCTTAAAACTAGGGTGCAAGCAATATAGTTGGGAGTCTAACACTGCTGCCTAAATATTTCTACTATATTAGATATCCTCAAATTGTATAATG</gDNA_template>
            <first_frame> L  F  A  L  T  S  C  L  L  N  N  G  C  I  F  T  L  P  S  F  F  C  L  L  L  H  N  S  G  T  E  I  F  R  L  R  S  I  S  T  C  *  V  F  T  L  P  E  N  T  W  F  L  R  Q  C  G  L  R  S  A  Y  L  L  *  L  C  L  F  R  *  P  V  Q  L  R  E  E  A  Y  G  *  Y  F  C  G  M  H  F  R  C  L  V  F  L  S  L  Y  S  R  R  *  P  C  L  G  F  C  S  H  F  T  Q  E  I  A  D  *  *  T  C  Y  C  S  S  L  P  R  E  Y  T  F  R  C  V  Y  Y  *  S  C  F  Q  :  A  G  Y  V  H  T  G  C  I  *  G  A  S  R  V  W  V  R  L  R  L  G  *  K  W  K  Y  C  Y  *  L  S  C  D  S  R  C  F  *  S  Q  :  S  D  S  C  *  S  N  Y  L  *  C  K  R :   C  W  I  F  N  S  S  *  Y   : C  Q  W  H  C  *  S  V  S  A  V  W  E  S  H  K  A  N  F  G  H  K  V  C  T  *  S  V  R  *  A  T  G  S  H  W  S  T  C  P  G  C  S  S  K  W  S  C  R  Q  S   : R  S  S  T  Y  *  T  *  F  L  R  K  T  Y  F  R  *  Y  N  H  I  Y  K  W  K  E  G  L  *  W  H  R  L  V  Q  N  S  *  P  M  Q  S  W  R  K   : G  N  C  G  S  A  A  W  G  S  E  R  E  D  P  C  T  S  G  T  K  A  *  R  I  V  V  P  Q  M  D  R  V  C  V  D  M  H  F  L  A  N  K  P  I  L  L  V  H  Q  L  L  N  G  C  V  Y  T  K  Q  R  L  K  L  G  C  K  Q  Y  S  W  E  S  N  T  A  A  *  I  F  L  L  Y  *  I  S  S  N  C  I  M </first_frame>
            <second_frame>  S  L  L  S  P  V  V  F  L  T  M  A  A  S  S  H  S  L  A  S  S  A  C  F  S  T  T  P  A  R  K  F  S  G  S  D  R  F  Q  L  A  K  S  L  L  C  R  K  I  P  G  F  S  G  S  V  V  C  A  R  R  I  C  S  N  Y  A  S  S  G  D  Q  S  N  Y  G  K  K  L  M  D  S  I  F  V  A  C  T  S  V  A  L  S  F  S  L  Y  I  A  D  V  D  P  A  S  A  F  V  V  T  S  P  R  K  L  Q  T  D  E  L  A  T  V  R  L  F  Q  E  N  T  P  S  V  V  Y  I  T  N  L  A  S  R :   Q  D  M  F  T  L  D  V  F  E  V  P  Q  G  S  G  S  G  F  V  W  D  K  N  G  N  I  V  T  N  Y  H  V  I  R  G  A  S  D  L  R :   V  T  L  A  D  Q  T  T  Y  D  A  K   : G  V  G  F  S  I  P  V  D  T  :  V  S  G  I  V  D  Q  L  V  Q  F  G  K  V  T  R  P  I  L  G  I  K  F  A  P  D  Q  S  V  E  Q  L  G  V  T  G  V  L  V  L  D  A  P  P  N  G  P  A  G  K  A  :  G  L  L  P  T  K  R  D  S  Y  G  R  L  I  L  G  D  I  I  T  S  I  N  G  K  K  V  S  N  G  T  D  L  Y  R  I  L  D  Q  C  K  V  G  E  K  :  V  I  V  E  V  L  R  G  D  Q  K  E  K  I  P  V  L  L  E  P  K  P  E  E  S  *  F  L  K  W  I  E  Y  V  L  I  C  I  S  W  R  T  S  P  Y  Y  *  C  I  N  C  *  M  V  V  Y  I  Q  N  N  A  *  N  *  G  A  S  N  I  V  G  S  L  T  L  L  P  K  Y  F  Y  Y  I  R  Y  P  Q  I  V  *   </second_frame>
            <third_frame>   L  C  S  H  Q  L  S  S  *  Q  W  L  H  L  H  T  P  *  L  L  L  L  A  S  P  Q  L  R  H  G  N  F  P  A  Q  I  D  F  N  L  L  S  L  Y  S  A  G  K  Y  L  V  S  P  A  V  W  S  A  L  G  V  F  A  L  T  M  P  L  P  V  T  S  P  T  T  G  R  S  L  W  I  V  F  L  W  H  A  L  P  L  P  C  L  S  L  S  I  *  Q  T  L  T  L  P  R  L  L  *  S  L  H  P  G  N  C  R  L  M  N  L  L  L  F  V  S  S  K  R  I  H  L  P  L  C  I  L  L  I  L  L  P   : G  R  I  C  S  H  W  M  Y  L  R  C  L  K  G  L  G  Q  A  S  S  G  I  K  M  E  I  L  L  L  I  I  M  *  F  E  V  L  L  I  S   : E  *  L  L  L  I  K  L  L  M  M  Q  K  :  V  L  D  F  Q  F  Q  L  I  L :   S  V  A  L  L  I  S  *  C  S  L  G  K  S  Q  G  Q  F  W  A  *  S  L  H  L  I  S  P  L  S  N  W  E  S  L  E  Y  L  S  W  M  L  L  Q  M  V  L  Q  A  K  Q :   V  F  Y  L  L  N  V  I  P  T  E  D  L  F  *  V  I  *  S  H  L  *  M  E  R  R  S  L  M  A  P  T  C  T  E  F  L  T  N  A  K  L  E  K  R :   *  L  W  K  C  C  V  G  I  R  K  R  R  S  L  Y  F  W  N  Q  S  L  K  N  R  S  S  S  N  G  *  S  M  C  *  Y  A  F  L  G  E  Q  A  H  I  I  S  A  S  I  V  E  W  L  C  I  Y  K  T  T  L  K  T  R  V  Q  A  I  *  L  G  V  *  H  C  C  L  N  I  S  T  I  L  D  I  L  K  L  Y  N  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02HBa0236E02.1" strand="+"/>
                <serials PGL_serial="7" AGS_serial="4" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="20480" stop="20904"/>
                    <exon start="21088" stop="21210"/>
                    <exon start="21518" stop="21555"/>
                    <exon start="23034" stop="23062"/>
                    <exon start="23245" stop="23397"/>
                    <exon start="23598" stop="23732"/>
                    <exon start="24189" stop="24266"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>978</number_coding_nucleotides>
                  <number_encoded_amino_acids>326</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>SLLSPVVFLTMAASSHSLASSACFSTTPARKFSGSDRFQLAKSLLCRKIPGFSGSVVCARRICSNYASSGDQSNYGKKLMDSIFVACTSVALSFSLYIADVDPASAFVVTSPRKLQTDELATVRLFQENTPSVVYITNLASRQDMFTLDVFEVPQGSGSGFVWDKNGNIVTNYHVIRGASDLRVTLADQTTYDAKGVGFSIPVDTVSGIVDQLVQFGKVTRPILGIKFAPDQSVEQLGVTGVLVLDAPPNGPAGKAGLLPTKRDSYGRLILGDIITSINGKKVSNGTDLYRILDQCKVGEKVIVEVLRGDQKEKIPVLLEPKPEES*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="5">
          <exon_coordinates>
            <exon e_start="20480" e_stop="20904"/>
            <exon e_start="21088" e_stop="21210"/>
            <exon e_start="21508" e_stop="21569"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.964" acc_prob="0.997" e_score="1.000"/>
          <exon-intron don_prob="0.997" acc_prob="0.000" e_score="1.000"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="20480" e_stop="20904" e_length="425"/>
          </exon>
          <intron i_serial="1" don_prob="0.964" acc_prob="0.997">
            <gDNA_intron_boundary i_start="20905" i_stop="21087" i_length="183"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="21088" e_stop="21210" e_length="123"/>
          </exon>
          <intron i_serial="2" don_prob="0.997" acc_prob="0.000">
            <gDNA_intron_boundary i_start="21211" i_stop="21507" i_length="297"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="21508" e_stop="21569" e_length="62"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="20480" stop="20854"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E329180" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="20482" stop="20904"/>
              <exon start="21088" stop="21210"/>
              <exon start="21508" stop="21569"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E284320" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="20493" stop="20904"/>
              <exon start="21088" stop="21116"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E442314" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="20493" stop="20742"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E439642" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="20495" stop="20904"/>
              <exon start="21088" stop="21187"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E725724" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="7" AGS_serial="5" gDNA_strand="+"/>
          <translation>
            <gDNA_template>TCTTTGCTCTCACCAGTTGTCTTCTTAACAATGGCTGCATCTTCACACTCCCTAGCTTCTTCTGCTTGCTTCTCCACAACTCCGGCACGGAAATTTTCCGGCTCAGATCGATTTCAACTTGCTAAGTCTTTACTCTGCCGGAAAATACCTGGTTTCTCCGGCAGTGTGGTCTGCGCTCGGCGTATTTGCTCTAACTATGCCTCTTCCGGTGACCAGTCCAACTACGGGAAGAAGCTTATGGATAGTATTTTTGTGGCATGCACTTCCGTTGCCTTGTCTTTCTCTCTCTATATAGCAGACGTTGACCCTGCCTCGGCTTTTGTAGTCACTTCACCCAGGAAATTGCAGACTGATGAACTTGCTACTGTTCGTCTCTTCCAAGAGAATACACCTTCCGTTGTGTATATTACTAATCTTGCTTCCAG : GCAGGATATGTTCACACTGGATGTATTTGAGGTGCCTCAAGGGTCTGGGTCAGGCTTCGTCTGGGATAAAAATGGAAATATTGTTACTAATTATCATGTGATTCGAGGTGCTTCTGATCTCAG : TCTTGCTCAGAGTGACTCTTGCTGATCAAACTACTTATGATGCAAAAGTTGTTGGATTTGAC</gDNA_template>
            <first_frame> S  L  L  S  P  V  V  F  L  T  M  A  A  S  S  H  S  L  A  S  S  A  C  F  S  T  T  P  A  R  K  F  S  G  S  D  R  F  Q  L  A  K  S  L  L  C  R  K  I  P  G  F  S  G  S  V  V  C  A  R  R  I  C  S  N  Y  A  S  S  G  D  Q  S  N  Y  G  K  K  L  M  D  S  I  F  V  A  C  T  S  V  A  L  S  F  S  L  Y  I  A  D  V  D  P  A  S  A  F  V  V  T  S  P  R  K  L  Q  T  D  E  L  A  T  V  R  L  F  Q  E  N  T  P  S  V  V  Y  I  T  N  L  A  S  R :   Q  D  M  F  T  L  D  V  F  E  V  P  Q  G  S  G  S  G  F  V  W  D  K  N  G  N  I  V  T  N  Y  H  V  I  R  G  A  S  D  L  S :   L  A  Q  S  D  S  C  *  S  N  Y  L  *  C  K  S  C  W  I  *  </first_frame>
            <second_frame>  L  C  S  H  Q  L  S  S  *  Q  W  L  H  L  H  T  P  *  L  L  L  L  A  S  P  Q  L  R  H  G  N  F  P  A  Q  I  D  F  N  L  L  S  L  Y  S  A  G  K  Y  L  V  S  P  A  V  W  S  A  L  G  V  F  A  L  T  M  P  L  P  V  T  S  P  T  T  G  R  S  L  W  I  V  F  L  W  H  A  L  P  L  P  C  L  S  L  S  I  *  Q  T  L  T  L  P  R  L  L  *  S  L  H  P  G  N  C  R  L  M  N  L  L  L  F  V  S  S  K  R  I  H  L  P  L  C  I  L  L  I  L  L  P   : G  R  I  C  S  H  W  M  Y  L  R  C  L  K  G  L  G  Q  A  S  S  G  I  K  M  E  I  L  L  L  I  I  M  *  F  E  V  L  L  I  S   : V  L  L  R  V  T  L  A  D  Q  T  T  Y  D  A  K  V  V  G  F  D </second_frame>
            <third_frame>   F  A  L  T  S  C  L  L  N  N  G  C  I  F  T  L  P  S  F  F  C  L  L  L  H  N  S  G  T  E  I  F  R  L  R  S  I  S  T  C  *  V  F  T  L  P  E  N  T  W  F  L  R  Q  C  G  L  R  S  A  Y  L  L  *  L  C  L  F  R  *  P  V  Q  L  R  E  E  A  Y  G  *  Y  F  C  G  M  H  F  R  C  L  V  F  L  S  L  Y  S  R  R  *  P  C  L  G  F  C  S  H  F  T  Q  E  I  A  D  *  *  T  C  Y  C  S  S  L  P  R  E  Y  T  F  R  C  V  Y  Y  *  S  C  F  Q  :  A  G  Y  V  H  T  G  C  I  *  G  A  S  R  V  W  V  R  L  R  L  G  *  K  W  K  Y  C  Y  *  L  S  C  D  S  R  C  F  *  S  Q  :  S  C  S  E  *  L  L  L  I  K  L  L  M  M  Q  K  L  L  D  L   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02HBa0236E02.1" strand="+"/>
                <serials PGL_serial="7" AGS_serial="5" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="20480" stop="20904"/>
                    <exon start="21088" stop="21210"/>
                    <exon start="21508" stop="21532"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>570</number_coding_nucleotides>
                  <number_encoded_amino_acids>190</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>SLLSPVVFLTMAASSHSLASSACFSTTPARKFSGSDRFQLAKSLLCRKIPGFSGSVVCARRICSNYASSGDQSNYGKKLMDSIFVACTSVALSFSLYIADVDPASAFVVTSPRKLQTDELATVRLFQENTPSVVYITNLASRQDMFTLDVFEVPQGSGSGFVWDKNGNIVTNYHVIRGASDLSLAQSDSC*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="8" PGL_strand="-" PGL_start="46988" PGL_stop="46239"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="46988" e_stop="46239"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="46988" e_stop="46239" e_length="750"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="46988" stop="46353"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E314807" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="46974" stop="46291"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E345006" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="46892" stop="46248"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E728818" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="46856" stop="46239"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E334690" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="46827" stop="46411"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E307417" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="8" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>GAAAGTGGAAACCGCCAAAACTATCATTATCGCAGAGACCTCATCTTTCAACTTCCATTCATTATTCTATTTTCCGTTTCACTCCATTTTCATACACCCAATCCCATTTTTGTAGCAGCAGTGTTCTGTTTCTTCTTCATGGAATTGAATCATACCAAGCAGACTCTGCAAACGGCTATGGAGAATGAACAGCAGCATCTCTCCCTCTCTGAATCAGATTCTACTGATTCTGAACCTGAGAAAGCTATTACTTTCTCCTCCCCAGCTCGTTTTCATAGCGGCTCCGATTCTGATCATTCCACTAAGTTCCAAACAGATAAAGCTACTAATCCCTCTACCGTCAATGGCGATTCTACTAAGGCGCAATCTCAGCCGAGGTCATCAATTTCCTCCGATTCAGATGATTTTAGTAAGTGTGGAGAACATAAAGTTAGTAAGATTGATTCTACTACTGCTACTGTTAATAGAGATTCTACAGCTACTAAAGTATCTTCACCGCCGGTGGAATCTCCGCCGAGGTCGTCAATTTCCTCTGATCAAATTTCTCTTCCTCATGAGTCCTTAAATATGGAGGATACTAAGCCTTCTGCAGCTCCGACGGGGAGTCCGCCGGAAAAACCTCCAATACCGGAAGCGGTGGTGAAGAAGTTTATCAAGGAGGAGCCACTGGCTTTGGTGAAAGCGGATCTGTTTGTCGGAGATGGTACAGCTAGTATTAAGGAAGGTGAAGACAGCGGCAACCGTCGGCAG</gDNA_template>
            <first_frame> E  S  G  N  R  Q  N  Y  H  Y  R  R  D  L  I  F  Q  L  P  F  I  I  L  F  S  V  S  L  H  F  H  T  P  N  P  I  F  V  A  A  V  F  C  F  F  F  M  E  L  N  H  T  K  Q  T  L  Q  T  A  M  E  N  E  Q  Q  H  L  S  L  S  E  S  D  S  T  D  S  E  P  E  K  A  I  T  F  S  S  P  A  R  F  H  S  G  S  D  S  D  H  S  T  K  F  Q  T  D  K  A  T  N  P  S  T  V  N  G  D  S  T  K  A  Q  S  Q  P  R  S  S  I  S  S  D  S  D  D  F  S  K  C  G  E  H  K  V  S  K  I  D  S  T  T  A  T  V  N  R  D  S  T  A  T  K  V  S  S  P  P  V  E  S  P  P  R  S  S  I  S  S  D  Q  I  S  L  P  H  E  S  L  N  M  E  D  T  K  P  S  A  A  P  T  G  S  P  P  E  K  P  P  I  P  E  A  V  V  K  K  F  I  K  E  E  P  L  A  L  V  K  A  D  L  F  V  G  D  G  T  A  S  I  K  E  G  E  D  S  G  N  R  R  Q </first_frame>
            <second_frame>  K  V  E  T  A  K  T  I  I  I  A  E  T  S  S  F  N  F  H  S  L  F  Y  F  P  F  H  S  I  F  I  H  P  I  P  F  L  *  Q  Q  C  S  V  S  S  S  W  N  *  I  I  P  S  R  L  C  K  R  L  W  R  M  N  S  S  I  S  P  S  L  N  Q  I  L  L  I  L  N  L  R  K  L  L  L  S  P  P  Q  L  V  F  I  A  A  P  I  L  I  I  P  L  S  S  K  Q  I  K  L  L  I  P  L  P  S  M  A  I  L  L  R  R  N  L  S  R  G  H  Q  F  P  P  I  Q  M  I  L  V  S  V  E  N  I  K  L  V  R  L  I  L  L  L  L  L  L  I  E  I  L  Q  L  L  K  Y  L  H  R  R  W  N  L  R  R  G  R  Q  F  P  L  I  K  F  L  F  L  M  S  P  *  I  W  R  I  L  S  L  L  Q  L  R  R  G  V  R  R  K  N  L  Q  Y  R  K  R  W  *  R  S  L  S  R  R  S  H  W  L  W  *  K  R  I  C  L  S  E  M  V  Q  L  V  L  R  K  V  K  T  A  A  T  V  G   </second_frame>
            <third_frame>   K  W  K  P  P  K  L  S  L  S  Q  R  P  H  L  S  T  S  I  H  Y  S  I  F  R  F  T  P  F  S  Y  T  Q  S  H  F  C  S  S  S  V  L  F  L  L  H  G  I  E  S  Y  Q  A  D  S  A  N  G  Y  G  E  *  T  A  A  S  L  P  L  *  I  R  F  Y  *  F  *  T  *  E  S  Y  Y  F  L  L  P  S  S  F  S  *  R  L  R  F  *  S  F  H  *  V  P  N  R  *  S  Y  *  S  L  Y  R  Q  W  R  F  Y  *  G  A  I  S  A  E  V  I  N  F  L  R  F  R  *  F  *  *  V  W  R  T  *  S  *  *  D  *  F  Y  Y  C  Y  C  *  *  R  F  Y  S  Y  *  S  I  F  T  A  G  G  I  S  A  E  V  V  N  F  L  *  S  N  F  S  S  S  *  V  L  K  Y  G  G  Y  *  A  F  C  S  S  D  G  E  S  A  G  K  T  S  N  T  G  S  G  G  E  E  V  Y  Q  G  G  A  T  G  F  G  E  S  G  S  V  C  R  R  W  Y  S  *  Y  *  G  R  *  R  Q  R  Q  P  S  A  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02HBa0236E02.1" strand="-"/>
                <serials PGL_serial="8" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="46988" stop="46239"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>750</number_coding_nucleotides>
                  <number_encoded_amino_acids>250</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>ESGNRQNYHYRRDLIFQLPFIILFSVSLHFHTPNPIFVAAVFCFFFMELNHTKQTLQTAMENEQQHLSLSESDSTDSEPEKAITFSSPARFHSGSDSDHSTKFQTDKATNPSTVNGDSTKAQSQPRSSISSDSDDFSKCGEHKVSKIDSTTATVNRDSTATKVSSPPVESPPRSSISSDQISLPHESLNMEDTKPSAAPTGSPPEKPPIPEAVVKKFIKEEPLALVKADLFVGDGTASIKEGEDSGNRRQ</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="9" PGL_strand="-" PGL_start="59600" PGL_stop="47522"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="59600" e_stop="59417"/>
            <exon e_start="59313" e_stop="59227"/>
            <exon e_start="58045" e_stop="57940"/>
            <exon e_start="56815" e_stop="56780"/>
            <exon e_start="56140" e_stop="56058"/>
            <exon e_start="55976" e_stop="55923"/>
            <exon e_start="55437" e_stop="55386"/>
            <exon e_start="54758" e_stop="54694"/>
            <exon e_start="53378" e_stop="53322"/>
            <exon e_start="53171" e_stop="53099"/>
            <exon e_start="49927" e_stop="49841"/>
            <exon e_start="49754" e_stop="49574"/>
            <exon e_start="49014" e_stop="48881"/>
            <exon e_start="48132" e_stop="47522"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.960" acc_prob="0.965" e_score="1.000"/>
          <exon-intron don_prob="1.000" acc_prob="0.593" e_score="1.000"/>
          <exon-intron don_prob="1.000" acc_prob="0.999" e_score="1.000"/>
          <exon-intron don_prob="0.894" acc_prob="0.975" e_score="1.000"/>
          <exon-intron don_prob="0.533" acc_prob="0.738" e_score="1.000"/>
          <exon-intron don_prob="0.993" acc_prob="0.981" e_score="1.000"/>
          <exon-intron don_prob="0.996" acc_prob="0.984" e_score="1.000"/>
          <exon-intron don_prob="0.496" acc_prob="0.987" e_score="1.000"/>
          <exon-intron don_prob="0.999" acc_prob="0.962" e_score="1.000"/>
          <exon-intron don_prob="0.521" acc_prob="0.989" e_score="0.986"/>
          <exon-intron don_prob="0.992" acc_prob="0.919" e_score="1.000"/>
          <exon-intron don_prob="0.776" acc_prob="0.985" e_score="1.000"/>
          <exon-intron don_prob="0.816" acc_prob="0.999" e_score="1.000"/>
          <exon-only e_score="0.985"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="59600" e_stop="59417" e_length="184"/>
          </exon>
          <intron i_serial="1" don_prob="0.960" acc_prob="0.965">
            <gDNA_intron_boundary i_start="59416" i_stop="59314" i_length="103"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="59313" e_stop="59227" e_length="87"/>
          </exon>
          <intron i_serial="2" don_prob="1.000" acc_prob="0.593">
            <gDNA_intron_boundary i_start="59226" i_stop="58046" i_length="1181"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="58045" e_stop="57940" e_length="106"/>
          </exon>
          <intron i_serial="3" don_prob="1.000" acc_prob="0.999">
            <gDNA_intron_boundary i_start="57939" i_stop="56816" i_length="1124"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="56815" e_stop="56780" e_length="36"/>
          </exon>
          <intron i_serial="4" don_prob="0.894" acc_prob="0.975">
            <gDNA_intron_boundary i_start="56779" i_stop="56141" i_length="639"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="56140" e_stop="56058" e_length="83"/>
          </exon>
          <intron i_serial="5" don_prob="0.533" acc_prob="0.738">
            <gDNA_intron_boundary i_start="56057" i_stop="55977" i_length="81"/>
          </intron>
          <exon e_serial="6" e_score="1.000">
            <gDNA_exon_boundary e_start="55976" e_stop="55923" e_length="54"/>
          </exon>
          <intron i_serial="6" don_prob="0.993" acc_prob="0.981">
            <gDNA_intron_boundary i_start="55922" i_stop="55438" i_length="485"/>
          </intron>
          <exon e_serial="7" e_score="1.000">
            <gDNA_exon_boundary e_start="55437" e_stop="55386" e_length="52"/>
          </exon>
          <intron i_serial="7" don_prob="0.996" acc_prob="0.984">
            <gDNA_intron_boundary i_start="55385" i_stop="54759" i_length="627"/>
          </intron>
          <exon e_serial="8" e_score="1.000">
            <gDNA_exon_boundary e_start="54758" e_stop="54694" e_length="65"/>
          </exon>
          <intron i_serial="8" don_prob="0.496" acc_prob="0.987">
            <gDNA_intron_boundary i_start="54693" i_stop="53379" i_length="1315"/>
          </intron>
          <exon e_serial="9" e_score="1.000">
            <gDNA_exon_boundary e_start="53378" e_stop="53322" e_length="57"/>
          </exon>
          <intron i_serial="9" don_prob="0.999" acc_prob="0.962">
            <gDNA_intron_boundary i_start="53321" i_stop="53172" i_length="150"/>
          </intron>
          <exon e_serial="10" e_score="0.986">
            <gDNA_exon_boundary e_start="53171" e_stop="53099" e_length="73"/>
          </exon>
          <intron i_serial="10" don_prob="0.521" acc_prob="0.989">
            <gDNA_intron_boundary i_start="53098" i_stop="49928" i_length="3171"/>
          </intron>
          <exon e_serial="11" e_score="1.000">
            <gDNA_exon_boundary e_start="49927" e_stop="49841" e_length="87"/>
          </exon>
          <intron i_serial="11" don_prob="0.992" acc_prob="0.919">
            <gDNA_intron_boundary i_start="49840" i_stop="49755" i_length="86"/>
          </intron>
          <exon e_serial="12" e_score="1.000">
            <gDNA_exon_boundary e_start="49754" e_stop="49574" e_length="181"/>
          </exon>
          <intron i_serial="12" don_prob="0.776" acc_prob="0.985">
            <gDNA_intron_boundary i_start="49573" i_stop="49015" i_length="559"/>
          </intron>
          <exon e_serial="13" e_score="1.000">
            <gDNA_exon_boundary e_start="49014" e_stop="48881" e_length="134"/>
          </exon>
          <intron i_serial="13" don_prob="0.816" acc_prob="0.999">
            <gDNA_intron_boundary i_start="48880" i_stop="48133" i_length="748"/>
          </intron>
          <exon e_serial="14" e_score="0.985">
            <gDNA_exon_boundary e_start="48132" e_stop="47522" e_length="611"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="59600" stop="59417"/>
              <exon start="59313" stop="59227"/>
              <exon start="58045" stop="57940"/>
              <exon start="56815" stop="56780"/>
              <exon start="56140" stop="56058"/>
              <exon start="55976" stop="55923"/>
              <exon start="55437" stop="55386"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E475349" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="59600" stop="59417"/>
              <exon start="59313" stop="59227"/>
              <exon start="58045" stop="58020"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E427078" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="59599" stop="59417"/>
              <exon start="59313" stop="59227"/>
              <exon start="58045" stop="57940"/>
              <exon start="56815" stop="56780"/>
              <exon start="56140" stop="56058"/>
              <exon start="55976" stop="55923"/>
              <exon start="55437" stop="55386"/>
              <exon start="54758" stop="54694"/>
              <exon start="53378" stop="53326"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E456720" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="59597" stop="59417"/>
              <exon start="59313" stop="59227"/>
              <exon start="58045" stop="57940"/>
              <exon start="56815" stop="56780"/>
              <exon start="56140" stop="56058"/>
              <exon start="55976" stop="55923"/>
              <exon start="55437" stop="55386"/>
              <exon start="54758" stop="54694"/>
              <exon start="53378" stop="53322"/>
              <exon start="53171" stop="53099"/>
              <exon start="49927" stop="49841"/>
              <exon start="49754" stop="49574"/>
              <exon start="49014" stop="48881"/>
              <exon start="48132" stop="47522"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E744923" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="59588" stop="59417"/>
              <exon start="59313" stop="59227"/>
              <exon start="58045" stop="57940"/>
              <exon start="56815" stop="56780"/>
              <exon start="56140" stop="56058"/>
              <exon start="55976" stop="55923"/>
              <exon start="55437" stop="55386"/>
              <exon start="54758" stop="54694"/>
              <exon start="53378" stop="53322"/>
              <exon start="53171" stop="53099"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E450077" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="59563" stop="59417"/>
              <exon start="59313" stop="59227"/>
              <exon start="58045" stop="57940"/>
              <exon start="56815" stop="56780"/>
              <exon start="56140" stop="56058"/>
              <exon start="55976" stop="55923"/>
              <exon start="55437" stop="55407"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E301063" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="59483" stop="59417"/>
              <exon start="59313" stop="59227"/>
              <exon start="58045" stop="57940"/>
              <exon start="56815" stop="56780"/>
              <exon start="56140" stop="56089"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E239516" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="49906" stop="49841"/>
              <exon start="49754" stop="49574"/>
              <exon start="49014" stop="48881"/>
              <exon start="48132" stop="47692"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E698492" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="49903" stop="49841"/>
              <exon start="49754" stop="49574"/>
              <exon start="49014" stop="48881"/>
              <exon start="48132" stop="47772"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E344965" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="49608" stop="49574"/>
              <exon start="49014" stop="48881"/>
              <exon start="48132" stop="47597"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E458852" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="49014" stop="48881"/>
              <exon start="48132" stop="47597"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E427079" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="49007" stop="48881"/>
              <exon start="48132" stop="47588"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E618323" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="49006" stop="48881"/>
              <exon start="48132" stop="47610"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E619157" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="48132" stop="47597"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E436404" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="48109" stop="47597"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E614115" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="48008" stop="47645"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E223291" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="47945" stop="47645"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E223058" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="9" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>AGAGTAAACGAGCGTTGATTTGTCGCTGACGAAATTTACAGTCAAGAGTAGTAACCGGTTGTAGTGAAAAAATGGAGTCGAGGAAAGTGACGAAGACGCTGGAAGATCAATGGGTGGTGGAGCGTCGAGTCCGAGAGATATACGATTATTTCTACAGCATTTCCCCCAACTCTCCGTCCGACCT : CATAGAGATCGAACGTGACAAACACTTCGGTTATCTAAGCCAAGGTCTCAGAAAACTTGGTCCGTCGTTTTCCGTTTTGGATGCCAG : TCGACCATGGCTTTGCTACTGGACACTTCATTCAATCGCTTTGTTGGGAGAATCTATTGGTGGCAAACTGGAAAATGATGCAATTGACTTTCTGACCCGTTGCCAG : GATAAAGATGGTGGCTATGGAGGTGGACCTGGTCAG : ATGCCTCATCTTGCAACTACTTATGCTGCAGTCAATTCACTAATAACTTTGGGCAAACCTGAAGCTCTGTCATCAATTAATAG : AGAAAAGTTGTACACATTTTTGCTGCGAATGAAAGACGCAAGTGGTGGATTCAG : GATGCACGATGGTGGAGAAGTAGATGTTCGTGCCTGTTATACTGCCATTTCT : GTTGCAAATATATTAAACATTGTGGATGACGAGCTGATTCATGGTGTTGGAAATTACATCCTAAG : TTGTCAGACTTATGAAGGTGGAATTGCTGGCGAACCAGGTTCTGAAGCTCATGGTGG : GTATACTTTCTGTGGGTTGGCTGCAATGATTCTGATCAACGAAGTGAATCGATTGGACTTGCCAGGTTTAATT : GATTGGGTGGTATTTAGACAAGGGGTCGAAGGTGGATTTCAAGGCAGGACAAATAAATTAGTCGATGGCTGCTATTCCTTTTGGCAG : GGCGCGGTAGTGTTTCTTATACAAAGACTAAATTTGATAGTCCATGAACAACTAGGGCTGTCAAATGACCTCAGTACAGAAAGTGCTGATGATTCTTCAGAGTCAGAGTTATCTGATGAAGAAGAGCATTTGGAAGGGATATCCTCTCATGTTCAGGATACTTTCCCTCTTGGACAAGCAG : GTGCTTGTCAAGAAAATGCTTCTCATAGCCCAAAAATAGCAGATACTGGATATGAGTTTATCAACCGACCCATAGCTATGAGGCCTCTCTTTGACAGCATGTATCTGCAGCAATATGTTCTTCTTTGCTCTCAG : ATTGAAGTTGGTGGTTTCAGAGACAAACCTGGGAAGGGTAGAGACTACTACCATACCTGTTACTGTTTAAGTGGTCTTTCAATTGCTCAGTATAGCTGGACCGACGAAGCTGATTCTCCACCATTACCCAGGGATGTATTTGGTCCTTATTCCAAATGTCTGTTGGAACAGGTTCACCCACTCTTCAACGTAGTGTTGGATCGGTATTATGAAGCTCGCGAATACTTCTCAGGCTTGTGAGACTGTTTCACCACTTTCATTAGCACCAACTTTTTCAGAAACTTAGTTGCAATCCAGAAGTTAAAAGTGTCATTGGGTTCAAAAGAGTTGTGATCGTTTATGTACAATATCCTTGCATTTGTATACGTGATACAAGTTGAGAGAATAACGGGTACTTTCTGAACTTGCTGAACTAGCACTAAATTCGTCTCTGTTTAGTGAGGTCTGTAAACATCAATGTGAAATTGCGAGATATGCATGTAATAGTGGCTAAGATTTACAAATCTGGATACCGGTTATTAGTGATCAGAAATTTCATTCAATTTCCCAAACGGTCACCTAAGTTTAGGATATTGCTTTAAAATATTATTTATTTTTCATTTAAGATCAAA</gDNA_template>
            <first_frame> R  V  N  E  R  *  F  V  A  D  E  I  Y  S  Q  E  *  *  P  V  V  V  K  K  W  S  R  G  K  *  R  R  R  W  K  I  N  G  W  W  S  V  E  S  E  R  Y  T  I  I  S  T  A  F  P  P  T  L  R  P  T   : S  *  R  S  N  V  T  N  T  S  V  I  *  A  K  V  S  E  N  L  V  R  R  F  P  F  W  M  P   : V  D  H  G  F  A  T  G  H  F  I  Q  S  L  C  W  E  N  L  L  V  A  N  W  K  M  M  Q  L  T  F  *  P  V  A  R :   I  K  M  V  A  M  E  V  D  L  V  R :   C  L  I  L  Q  L  L  M  L  Q  S  I  H  *  *  L  W  A  N  L  K  L  C  H  Q  L  I   : E  K  S  C  T  H  F  C  C  E  *  K  T  Q  V  V  D  S   : G  C  T  M  V  E  K  *  M  F  V  P  V  I  L  P  F  L :   L  Q  I  Y  *  T  L  W  M  T  S  *  F  M  V  L  E  I  T  S  *   : V  V  R  L  M  K  V  E  L  L  A  N  Q  V  L  K  L  M  V   : G  I  L  S  V  G  W  L  Q  *  F  *  S  T  K  *  I  D  W  T  C  Q  V  *  L :   I  G  W  Y  L  D  K  G  S  K  V  D  F  K  A  G  Q  I  N  *  S  M  A  A  I  P  F  G  R :   A  R  *  C  F  L  Y  K  D  *  I  *  *  S  M  N  N  *  G  C  Q  M  T  S  V  Q  K  V  L  M  I  L  Q  S  Q  S  Y  L  M  K  K  S  I  W  K  G  Y  P  L  M  F  R  I  L  S  L  L  D  K  Q  :  V  L  V  K  K  M  L  L  I  A  Q  K  *  Q  I  L  D  M  S  L  S  T  D  P  *  L  *  G  L  S  L  T  A  C  I  C  S  N  M  F  F  F  A  L  R :   L  K  L  V  V  S  E  T  N  L  G  R  V  E  T  T  T  I  P  V  T  V  *  V  V  F  Q  L  L  S  I  A  G  P  T  K  L  I  L  H  H  Y  P  G  M  Y  L  V  L  I  P  N  V  C  W  N  R  F  T  H  S  S  T  *  C  W  I  G  I  M  K  L  A  N  T  S  Q  A  C  E  T  V  S  P  L  S  L  A  P  T  F  S  E  T  *  L  Q  S  R  S  *  K  C  H  W  V  Q  K  S  C  D  R  L  C  T  I  S  L  H  L  Y  T  *  Y  K  L  R  E  *  R  V  L  S  E  L  A  E  L  A  L  N  S  S  L  F  S  E  V  C  K  H  Q  C  E  I  A  R  Y  A  C  N  S  G  *  D  L  Q  I  W  I  P  V  I  S  D  Q  K  F  H  S  I  S  Q  T  V  T  *  V  *  D  I  A  L  K  Y  Y  L  F  F  I  *  D  Q  </first_frame>
            <second_frame>  E  *  T  S  V  D  L  S  L  T  K  F  T  V  K  S  S  N  R  L  *  *  K  N  G  V  E  E  S  D  E  D  A  G  R  S  M  G  G  G  A  S  S  P  R  D  I  R  L  F  L  Q  H  F  P  Q  L  S  V  R  P  :  H  R  D  R  T  *  Q  T  L  R  L  S  K  P  R  S  Q  K  T  W  S  V  V  F  R  F  G  C  Q  :  S  T  M  A  L  L  L  D  T  S  F  N  R  F  V  G  R  I  Y  W  W  Q  T  G  K  *  C  N  *  L  S  D  P  L  P   : G  *  R  W  W  L  W  R  W  T  W  S   : D  A  S  S  C  N  Y  L  C  C  S  Q  F  T  N  N  F  G  Q  T  *  S  S  V  I  N  *  *  :  R  K  V  V  H  I  F  A  A  N  E  R  R  K  W  W  I  Q  :  D  A  R  W  W  R  S  R  C  S  C  L  L  Y  C  H  F   : C  C  K  Y  I  K  H  C  G  *  R  A  D  S  W  C  W  K  L  H  P  K  :  L  S  D  L  *  R  W  N  C  W  R  T  R  F  *  S  S  W  W  :  V  Y  F  L  W  V  G  C  N  D  S  D  Q  R  S  E  S  I  G  L  A  R  F  N   : *  L  G  G  I  *  T  R  G  R  R  W  I  S  R  Q  D  K  *  I  S  R  W  L  L  F  L  L  A   : G  R  G  S  V  S  Y  T  K  T  K  F  D  S  P  *  T  T  R  A  V  K  *  P  Q  Y  R  K  C  *  *  F  F  R  V  R  V  I  *  *  R  R  A  F  G  R  D  I  L  S  C  S  G  Y  F  P  S  W  T  S  R :   C  L  S  R  K  C  F  S  *  P  K  N  S  R  Y  W  I  *  V  Y  Q  P  T  H  S  Y  E  A  S  L  *  Q  H  V  S  A  A  I  C  S  S  L  L  S   : D  *  S  W  W  F  Q  R  Q  T  W  E  G  *  R  L  L  P  Y  L  L  L  F  K  W  S  F  N  C  S  V  *  L  D  R  R  S  *  F  S  T  I  T  Q  G  C  I  W  S  L  F  Q  M  S  V  G  T  G  S  P  T  L  Q  R  S  V  G  S  V  L  *  S  S  R  I  L  L  R  L  V  R  L  F  H  H  F  H  *  H  Q  L  F  Q  K  L  S  C  N  P  E  V  K  S  V  I  G  F  K  R  V  V  I  V  Y  V  Q  Y  P  C  I  C  I  R  D  T  S  *  E  N  N  G  Y  F  L  N  L  L  N  *  H  *  I  R  L  C  L  V  R  S  V  N  I  N  V  K  L  R  D  M  H  V  I  V  A  K  I  Y  K  S  G  Y  R  L  L  V  I  R  N  F  I  Q  F  P  K  R  S  P  K  F  R  I  L  L  *  N  I  I  Y  F  S  F  K  I  K </second_frame>
            <third_frame>   S  K  R  A  L  I  C  R  *  R  N  L  Q  S  R  V  V  T  G  C  S  E  K  M  E  S  R  K  V  T  K  T  L  E  D  Q  W  V  V  E  R  R  V  R  E  I  Y  D  Y  F  Y  S  I  S  P  N  S  P  S  D  L :   I  E  I  E  R  D  K  H  F  G  Y  L  S  Q  G  L  R  K  L  G  P  S  F  S  V  L  D  A  S :   R  P  W  L  C  Y  W  T  L  H  S  I  A  L  L  G  E  S  I  G  G  K  L  E  N  D  A  I  D  F  L  T  R  C  Q  :  D  K  D  G  G  Y  G  G  G  P  G  Q  :  M  P  H  L  A  T  T  Y  A  A  V  N  S  L  I  T  L  G  K  P  E  A  L  S  S  I  N  R :   E  K  L  Y  T  F  L  L  R  M  K  D  A  S  G  G  F  R :   M  H  D  G  G  E  V  D  V  R  A  C  Y  T  A  I  S  :  V  A  N  I  L  N  I  V  D  D  E  L  I  H  G  V  G  N  Y  I  L  S :   C  Q  T  Y  E  G  G  I  A  G  E  P  G  S  E  A  H  G  G :   Y  T  F  C  G  L  A  A  M  I  L  I  N  E  V  N  R  L  D  L  P  G  L  I  :  D  W  V  V  F  R  Q  G  V  E  G  G  F  Q  G  R  T  N  K  L  V  D  G  C  Y  S  F  W  Q  :  G  A  V  V  F  L  I  Q  R  L  N  L  I  V  H  E  Q  L  G  L  S  N  D  L  S  T  E  S  A  D  D  S  S  E  S  E  L  S  D  E  E  E  H  L  E  G  I  S  S  H  V  Q  D  T  F  P  L  G  Q  A   : G  A  C  Q  E  N  A  S  H  S  P  K  I  A  D  T  G  Y  E  F  I  N  R  P  I  A  M  R  P  L  F  D  S  M  Y  L  Q  Q  Y  V  L  L  C  S  Q  :  I  E  V  G  G  F  R  D  K  P  G  K  G  R  D  Y  Y  H  T  C  Y  C  L  S  G  L  S  I  A  Q  Y  S  W  T  D  E  A  D  S  P  P  L  P  R  D  V  F  G  P  Y  S  K  C  L  L  E  Q  V  H  P  L  F  N  V  V  L  D  R  Y  Y  E  A  R  E  Y  F  S  G  L  *  D  C  F  T  T  F  I  S  T  N  F  F  R  N  L  V  A  I  Q  K  L  K  V  S  L  G  S  K  E  L  *  S  F  M  Y  N  I  L  A  F  V  Y  V  I  Q  V  E  R  I  T  G  T  F  *  T  C  *  T  S  T  K  F  V  S  V  *  *  G  L  *  T  S  M  *  N  C  E  I  C  M  *  *  W  L  R  F  T  N  L  D  T  G  Y  *  *  S  E  I  S  F  N  F  P  N  G  H  L  S  L  G  Y  C  F  K  I  L  F  I  F  H  L  R  S   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02HBa0236E02.1" strand="-"/>
                <serials PGL_serial="9" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="59571" stop="59417"/>
                    <exon start="59313" stop="59227"/>
                    <exon start="58045" stop="57940"/>
                    <exon start="56815" stop="56780"/>
                    <exon start="56140" stop="56058"/>
                    <exon start="55976" stop="55923"/>
                    <exon start="55437" stop="55386"/>
                    <exon start="54758" stop="54694"/>
                    <exon start="53378" stop="53322"/>
                    <exon start="53171" stop="53099"/>
                    <exon start="49927" stop="49841"/>
                    <exon start="49754" stop="49574"/>
                    <exon start="49014" stop="48881"/>
                    <exon start="48132" stop="47893"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>1407</number_coding_nucleotides>
                  <number_encoded_amino_acids>469</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>RNLQSRVVTGCSEKMESRKVTKTLEDQWVVERRVREIYDYFYSISPNSPSDLIEIERDKHFGYLSQGLRKLGPSFSVLDASRPWLCYWTLHSIALLGESIGGKLENDAIDFLTRCQDKDGGYGGGPGQMPHLATTYAAVNSLITLGKPEALSSINREKLYTFLLRMKDASGGFRMHDGGEVDVRACYTAISVANILNIVDDELIHGVGNYILSCQTYEGGIAGEPGSEAHGGYTFCGLAAMILINEVNRLDLPGLIDWVVFRQGVEGGFQGRTNKLVDGCYSFWQGAVVFLIQRLNLIVHEQLGLSNDLSTESADDSSESELSDEEEHLEGISSHVQDTFPLGQAGACQENASHSPKIADTGYEFINRPIAMRPLFDSMYLQQYVLLCSQIEVGGFRDKPGKGRDYYHTCYCLSGLSIAQYSWTDEADSPPLPRDVFGPYSKCLLEQVHPLFNVVLDRYYEAREYFSGL*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="2">
          <exon_coordinates>
            <exon e_start="59600" e_stop="59417"/>
            <exon e_start="59313" e_stop="59227"/>
            <exon e_start="58045" e_stop="57940"/>
            <exon e_start="56943" e_stop="56596"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.960" acc_prob="0.965" e_score="0.952"/>
          <exon-intron don_prob="1.000" acc_prob="0.593" e_score="0.954"/>
          <exon-intron don_prob="1.000" acc_prob="0.664" e_score="0.943"/>
          <exon-only e_score="0.934"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.952">
            <gDNA_exon_boundary e_start="59600" e_stop="59417" e_length="184"/>
          </exon>
          <intron i_serial="1" don_prob="0.960" acc_prob="0.965">
            <gDNA_intron_boundary i_start="59416" i_stop="59314" i_length="103"/>
          </intron>
          <exon e_serial="2" e_score="0.954">
            <gDNA_exon_boundary e_start="59313" e_stop="59227" e_length="87"/>
          </exon>
          <intron i_serial="2" don_prob="1.000" acc_prob="0.593">
            <gDNA_intron_boundary i_start="59226" i_stop="58046" i_length="1181"/>
          </intron>
          <exon e_serial="3" e_score="0.943">
            <gDNA_exon_boundary e_start="58045" e_stop="57940" e_length="106"/>
          </exon>
          <intron i_serial="3" don_prob="1.000" acc_prob="0.664">
            <gDNA_intron_boundary i_start="57939" i_stop="56944" i_length="996"/>
          </intron>
          <exon e_serial="4" e_score="0.934">
            <gDNA_exon_boundary e_start="56943" e_stop="56596" e_length="348"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="59600" stop="59417"/>
              <exon start="59313" stop="59227"/>
              <exon start="58045" stop="58020"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E427078" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="59581" stop="59417"/>
              <exon start="59313" stop="59227"/>
              <exon start="58045" stop="57940"/>
              <exon start="56943" stop="56596"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E613174" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="9" AGS_serial="2" gDNA_strand="-"/>
          <translation>
            <gDNA_template>AGAGTAAACGAGCGTTGATTTGTCGCTGACGAAATTTACAGTCAAGAGTAGTAACCGGTTGTAGTGAAAAAATGGAGTCGAGGAAAGTGACGAAGACGCTGGAAGATCAATGGGTGGTGGAGCGTCGAGTCCGAGAGATATACGATTATTTCTACAGCATTTCCCCCAACTCTCCGTCCGACCT : CATAGAGATCGAACGTGACAAACACTTCGGTTATCTAAGCCAAGGTCTCAGAAAACTTGGTCCGTCGTTTTCCGTTTTGGATGCCAG : TCGACCATGGCTTTGCTACTGGACACTTCATTCAATCGCTTTGTTGGGAGAATCTATTGGTGGCAAACTGGAAAATGATGCAATTGACTTTCTGACCCGTTGCCAG : AATACTGGTGTAACTGTCCTTTTTTTTTTCTTGCCTGCGATTCTAGCTAATTTGTTTTTGGACTTCTCGTTCAATAAAATGCGGTAAGATTTAGTTTCATGTGTTGTTTACTGTTACCTTCCTCACAGGATAAAGATGGTGGCTATGGAGGTGGACCTGGTCAGGCAAGTCAAATTCTCCCACTCCAGTCTTAGTGCCGTTAAATCAGATTTGTGTCAGATTCTTCATGCTTATTTTCACATTGAGTTTGATTATCTGATGTCTTCAATTGTTTTTAATATGCAGTATGCTGCTTTATTTTGTGATGATGGTTGATTTGAATATTGTAAATTTGTTAACTCTATAATT</gDNA_template>
            <first_frame> R  V  N  E  R  *  F  V  A  D  E  I  Y  S  Q  E  *  *  P  V  V  V  K  K  W  S  R  G  K  *  R  R  R  W  K  I  N  G  W  W  S  V  E  S  E  R  Y  T  I  I  S  T  A  F  P  P  T  L  R  P  T   : S  *  R  S  N  V  T  N  T  S  V  I  *  A  K  V  S  E  N  L  V  R  R  F  P  F  W  M  P   : V  D  H  G  F  A  T  G  H  F  I  Q  S  L  C  W  E  N  L  L  V  A  N  W  K  M  M  Q  L  T  F  *  P  V  A  R :   I  L  V  *  L  S  F  F  F  S  C  L  R  F  *  L  I  C  F  W  T  S  R  S  I  K  C  G  K  I  *  F  H  V  L  F  T  V  T  F  L  T  G  *  R  W  W  L  W  R  W  T  W  S  G  K  S  N  S  P  T  P  V  L  V  P  L  N  Q  I  C  V  R  F  F  M  L  I  F  T  L  S  L  I  I  *  C  L  Q  L  F  L  I  C  S  M  L  L  Y  F  V  M  M  V  D  L  N  I  V  N  L  L  T  L  *   </first_frame>
            <second_frame>  E  *  T  S  V  D  L  S  L  T  K  F  T  V  K  S  S  N  R  L  *  *  K  N  G  V  E  E  S  D  E  D  A  G  R  S  M  G  G  G  A  S  S  P  R  D  I  R  L  F  L  Q  H  F  P  Q  L  S  V  R  P  :  H  R  D  R  T  *  Q  T  L  R  L  S  K  P  R  S  Q  K  T  W  S  V  V  F  R  F  G  C  Q  :  S  T  M  A  L  L  L  D  T  S  F  N  R  F  V  G  R  I  Y  W  W  Q  T  G  K  *  C  N  *  L  S  D  P  L  P   : E  Y  W  C  N  C  P  F  F  F  L  A  C  D  S  S  *  F  V  F  G  L  L  V  Q  *  N  A  V  R  F  S  F  M  C  C  L  L  L  P  S  S  Q  D  K  D  G  G  Y  G  G  G  P  G  Q  A  S  Q  I  L  P  L  Q  S  *  C  R  *  I  R  F  V  S  D  S  S  C  L  F  S  H  *  V  *  L  S  D  V  F  N  C  F  *  Y  A  V  C  C  F  I  L  *  *  W  L  I  *  I  L  *  I  C  *  L  Y  N  </second_frame>
            <third_frame>   S  K  R  A  L  I  C  R  *  R  N  L  Q  S  R  V  V  T  G  C  S  E  K  M  E  S  R  K  V  T  K  T  L  E  D  Q  W  V  V  E  R  R  V  R  E  I  Y  D  Y  F  Y  S  I  S  P  N  S  P  S  D  L :   I  E  I  E  R  D  K  H  F  G  Y  L  S  Q  G  L  R  K  L  G  P  S  F  S  V  L  D  A  S :   R  P  W  L  C  Y  W  T  L  H  S  I  A  L  L  G  E  S  I  G  G  K  L  E  N  D  A  I  D  F  L  T  R  C  Q  :  N  T  G  V  T  V  L  F  F  F  L  P  A  I  L  A  N  L  F  L  D  F  S  F  N  K  M  R  *  D  L  V  S  C  V  V  Y  C  Y  L  P  H  R  I  K  M  V  A  M  E  V  D  L  V  R  Q  V  K  F  S  H  S  S  L  S  A  V  K  S  D  L  C  Q  I  L  H  A  Y  F  H  I  E  F  D  Y  L  M  S  S  I  V  F  N  M  Q  Y  A  A  L  F  C  D  D  G  *  F  E  Y  C  K  F  V  N  S  I  I </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02HBa0236E02.1" strand="-"/>
                <serials PGL_serial="9" AGS_serial="2" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="59571" stop="59417"/>
                    <exon start="59313" stop="59227"/>
                    <exon start="58045" stop="57940"/>
                    <exon start="56943" stop="56857"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>432</number_coding_nucleotides>
                  <number_encoded_amino_acids>144</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>RNLQSRVVTGCSEKMESRKVTKTLEDQWVVERRVREIYDYFYSISPNSPSDLIEIERDKHFGYLSQGLRKLGPSFSVLDASRPWLCYWTLHSIALLGESIGGKLENDAIDFLTRCQNTGVTVLFFFLPAILANLFLDFSFNKMR*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C02HBa0236E02.1" strand="-"/>
                <serials PGL_serial="9" AGS_serial="2" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="56856" stop="56629"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>225</number_coding_nucleotides>
                  <number_encoded_amino_acids>75</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>DLVSCVVYCYLPHRIKMVAMEVDLVRQVKFSHSSLSAVKSDLCQILHAYFHIEFDYLMSSIVFNMQYAALFCDDG*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="3">
          <exon_coordinates>
            <exon e_start="59600" e_stop="59417"/>
            <exon e_start="59313" e_stop="59227"/>
            <exon e_start="58045" e_stop="57940"/>
            <exon e_start="56943" e_stop="56780"/>
            <exon e_start="56140" e_stop="56044"/>
            <exon e_start="55976" e_stop="55944"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.960" acc_prob="0.965" e_score="0.967"/>
          <exon-intron don_prob="1.000" acc_prob="0.593" e_score="0.954"/>
          <exon-intron don_prob="1.000" acc_prob="0.664" e_score="0.953"/>
          <exon-intron don_prob="0.894" acc_prob="0.975" e_score="0.945"/>
          <exon-intron don_prob="0.476" acc_prob="0.738" e_score="0.990"/>
          <exon-only e_score="0.970"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.967">
            <gDNA_exon_boundary e_start="59600" e_stop="59417" e_length="184"/>
          </exon>
          <intron i_serial="1" don_prob="0.960" acc_prob="0.965">
            <gDNA_intron_boundary i_start="59416" i_stop="59314" i_length="103"/>
          </intron>
          <exon e_serial="2" e_score="0.954">
            <gDNA_exon_boundary e_start="59313" e_stop="59227" e_length="87"/>
          </exon>
          <intron i_serial="2" don_prob="1.000" acc_prob="0.593">
            <gDNA_intron_boundary i_start="59226" i_stop="58046" i_length="1181"/>
          </intron>
          <exon e_serial="3" e_score="0.953">
            <gDNA_exon_boundary e_start="58045" e_stop="57940" e_length="106"/>
          </exon>
          <intron i_serial="3" don_prob="1.000" acc_prob="0.664">
            <gDNA_intron_boundary i_start="57939" i_stop="56944" i_length="996"/>
          </intron>
          <exon e_serial="4" e_score="0.945">
            <gDNA_exon_boundary e_start="56943" e_stop="56780" e_length="164"/>
          </exon>
          <intron i_serial="4" don_prob="0.894" acc_prob="0.975">
            <gDNA_intron_boundary i_start="56779" i_stop="56141" i_length="639"/>
          </intron>
          <exon e_serial="5" e_score="0.990">
            <gDNA_exon_boundary e_start="56140" e_stop="56044" e_length="97"/>
          </exon>
          <intron i_serial="5" don_prob="0.476" acc_prob="0.738">
            <gDNA_intron_boundary i_start="56043" i_stop="55977" i_length="67"/>
          </intron>
          <exon e_serial="6" e_score="0.970">
            <gDNA_exon_boundary e_start="55976" e_stop="55944" e_length="33"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="59600" stop="59417"/>
              <exon start="59313" stop="59227"/>
              <exon start="58045" stop="57940"/>
              <exon start="56943" stop="56780"/>
              <exon start="56140" stop="56044"/>
              <exon start="55976" stop="55944"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E485055" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="59600" stop="59417"/>
              <exon start="59313" stop="59227"/>
              <exon start="58045" stop="58020"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E427078" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="9" AGS_serial="3" gDNA_strand="-"/>
          <translation>
            <gDNA_template>AGAGTAAACGAGCGTTGATTTGTCGCTGACGAAATTTACAGTCAAGAGTAGTAACCGGTTGTAGTGAAAAAATGGAGTCGAGGAAAGTGACGAAGACGCTGGAAGATCAATGGGTGGTGGAGCGTCGAGTCCGAGAGATATACGATTATTTCTACAGCATTTCCCCCAACTCTCCGTCCGACCT : CATAGAGATCGAACGTGACAAACACTTCGGTTATCTAAGCCAAGGTCTCAGAAAACTTGGTCCGTCGTTTTCCGTTTTGGATGCCAG : TCGACCATGGCTTTGCTACTGGACACTTCATTCAATCGCTTTGTTGGGAGAATCTATTGGTGGCAAACTGGAAAATGATGCAATTGACTTTCTGACCCGTTGCCAG : AATACTGGTGTAACTGTCCTTTTTTTTTTCTTGCCTGCGATTCTAGCTAATTTGTTTTTGGACTTCTCGTTCAATAAAATGCGGTAAGATTTAGTTTCATGTGTTGTTTACTGTTACCTTCCTCACAGGATAAAGATGGTGGCTATGGAGGTGGACCTGGTCAG : ATGCCTCATCTTGCAACTACTTATGCTGCAGTCAATTCACTAATAACTTTGGGCAAACCTGAAGCTCTGTCATCAATTAATAGGTGCACAAGCTATA : AGAAAAGTTGTACACATTTTTGCTGCGAATGAA</gDNA_template>
            <first_frame> R  V  N  E  R  *  F  V  A  D  E  I  Y  S  Q  E  *  *  P  V  V  V  K  K  W  S  R  G  K  *  R  R  R  W  K  I  N  G  W  W  S  V  E  S  E  R  Y  T  I  I  S  T  A  F  P  P  T  L  R  P  T   : S  *  R  S  N  V  T  N  T  S  V  I  *  A  K  V  S  E  N  L  V  R  R  F  P  F  W  M  P   : V  D  H  G  F  A  T  G  H  F  I  Q  S  L  C  W  E  N  L  L  V  A  N  W  K  M  M  Q  L  T  F  *  P  V  A  R :   I  L  V  *  L  S  F  F  F  S  C  L  R  F  *  L  I  C  F  W  T  S  R  S  I  K  C  G  K  I  *  F  H  V  L  F  T  V  T  F  L  T  G  *  R  W  W  L  W  R  W  T  W  S   : D  A  S  S  C  N  Y  L  C  C  S  Q  F  T  N  N  F  G  Q  T  *  S  S  V  I  N  *  *  V  H  K  L  * :   E  K  L  Y  T  F  L  L  R  M   </first_frame>
            <second_frame>  E  *  T  S  V  D  L  S  L  T  K  F  T  V  K  S  S  N  R  L  *  *  K  N  G  V  E  E  S  D  E  D  A  G  R  S  M  G  G  G  A  S  S  P  R  D  I  R  L  F  L  Q  H  F  P  Q  L  S  V  R  P  :  H  R  D  R  T  *  Q  T  L  R  L  S  K  P  R  S  Q  K  T  W  S  V  V  F  R  F  G  C  Q  :  S  T  M  A  L  L  L  D  T  S  F  N  R  F  V  G  R  I  Y  W  W  Q  T  G  K  *  C  N  *  L  S  D  P  L  P   : E  Y  W  C  N  C  P  F  F  F  L  A  C  D  S  S  *  F  V  F  G  L  L  V  Q  *  N  A  V  R  F  S  F  M  C  C  L  L  L  P  S  S  Q  D  K  D  G  G  Y  G  G  G  P  G  Q  :  M  P  H  L  A  T  T  Y  A  A  V  N  S  L  I  T  L  G  K  P  E  A  L  S  S  I  N  R  C  T  S  Y   : K  K  S  C  T  H  F  C  C  E  *  </second_frame>
            <third_frame>   S  K  R  A  L  I  C  R  *  R  N  L  Q  S  R  V  V  T  G  C  S  E  K  M  E  S  R  K  V  T  K  T  L  E  D  Q  W  V  V  E  R  R  V  R  E  I  Y  D  Y  F  Y  S  I  S  P  N  S  P  S  D  L :   I  E  I  E  R  D  K  H  F  G  Y  L  S  Q  G  L  R  K  L  G  P  S  F  S  V  L  D  A  S :   R  P  W  L  C  Y  W  T  L  H  S  I  A  L  L  G  E  S  I  G  G  K  L  E  N  D  A  I  D  F  L  T  R  C  Q  :  N  T  G  V  T  V  L  F  F  F  L  P  A  I  L  A  N  L  F  L  D  F  S  F  N  K  M  R  *  D  L  V  S  C  V  V  Y  C  Y  L  P  H  R  I  K  M  V  A  M  E  V  D  L  V  R :   C  L  I  L  Q  L  L  M  L  Q  S  I  H  *  *  L  W  A  N  L  K  L  C  H  Q  L  I  G  A  Q  A  I  :  R  K  V  V  H  I  F  A  A  N  E </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02HBa0236E02.1" strand="-"/>
                <serials PGL_serial="9" AGS_serial="3" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="59571" stop="59417"/>
                    <exon start="59313" stop="59227"/>
                    <exon start="58045" stop="57940"/>
                    <exon start="56943" stop="56857"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>432</number_coding_nucleotides>
                  <number_encoded_amino_acids>144</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>RNLQSRVVTGCSEKMESRKVTKTLEDQWVVERRVREIYDYFYSISPNSPSDLIEIERDKHFGYLSQGLRKLGPSFSVLDASRPWLCYWTLHSIALLGESIGGKLENDAIDFLTRCQNTGVTVLFFFLPAILANLFLDFSFNKMR*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C02HBa0236E02.1" strand="-"/>
                <serials PGL_serial="9" AGS_serial="3" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="56866" stop="56780"/>
                    <exon start="56140" stop="56044"/>
                    <exon start="55976" stop="55945"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>213</number_coding_nucleotides>
                  <number_encoded_amino_acids>71</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>NAVRFSFMCCLLLPSSQDKDGGYGGGPGQMPHLATTYAAVNSLITLGKPEALSSINRCTSYKKSCTHFCCE*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="10" PGL_strand="+" PGL_start="47782" PGL_stop="48137"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="47782" e_stop="48137"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.921"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.921">
            <gDNA_exon_boundary e_start="47782" e_stop="48137" e_length="356"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="47782" stop="48137"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E431102" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="10" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>GATATTGTACATAAACGATCACAACTCTTTTGAACCCAATGACACTTTTAACTTCTGGATTGCAACTAAGTTTCTGAAAAAGTTGGTGCTAATGAAAGTGGTGAAACAGTCTCACAAGCCTGAGAAGTATTCGCGAGCTTCATAATACCGATCCAACACTACGTTGAAGAGTGGGTGAACCTGTTCCAACAGACATTTGGAATAAGGACCAAATACATCCCTGGGTAATGGTGGAGAATCAGCTTCGTCGGTCCAGCTATACTGAGCAATTGAAAGACCACTTAAACAGTAACAGGTATGGTAGTAGTCTCTACCCTTCCCAGGTTTGTCTCTGAAACCACCAACTTCAATCTACA</gDNA_template>
            <first_frame> D  I  V  H  K  R  S  Q  L  F  *  T  Q  *  H  F  *  L  L  D  C  N  *  V  S  E  K  V  G  A  N  E  S  G  E  T  V  S  Q  A  *  E  V  F  A  S  F  I  I  P  I  Q  H  Y  V  E  E  W  V  N  L  F  Q  Q  T  F  G  I  R  T  K  Y  I  P  G  *  W  W  R  I  S  F  V  G  P  A  I  L  S  N  *  K  T  T  *  T  V  T  G  M  V  V  V  S  T  L  P  R  F  V  S  E  T  T  N  F  N  L   </first_frame>
            <second_frame>  I  L  Y  I  N  D  H  N  S  F  E  P  N  D  T  F  N  F  W  I  A  T  K  F  L  K  K  L  V  L  M  K  V  V  K  Q  S  H  K  P  E  K  Y  S  R  A  S  *  Y  R  S  N  T  T  L  K  S  G  *  T  C  S  N  R  H  L  E  *  G  P  N  T  S  L  G  N  G  G  E  S  A  S  S  V  Q  L  Y  *  A  I  E  R  P  L  K  Q  *  Q  V  W  *  *  S  L  P  F  P  G  L  S  L  K  P  P  T  S  I  Y  </second_frame>
            <third_frame>   Y  C  T  *  T  I  T  T  L  L  N  P  M  T  L  L  T  S  G  L  Q  L  S  F  *  K  S  W  C  *  *  K  W  *  N  S  L  T  S  L  R  S  I  R  E  L  H  N  T  D  P  T  L  R  *  R  V  G  E  P  V  P  T  D  I  W  N  K  D  Q  I  H  P  W  V  M  V  E  N  Q  L  R  R  S  S  Y  T  E  Q  L  K  D  H  L  N  S  N  R  Y  G  S  S  L  Y  P  S  Q  V  C  L  *  N  H  Q  L  Q  S  T </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <none gDNA_id="C02HBa0236E02.1"/>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="11" PGL_strand="+" PGL_start="65449" PGL_stop="70379"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="65449" e_stop="65689"/>
            <exon e_start="66850" e_stop="67021"/>
            <exon e_start="67765" e_stop="68305"/>
            <exon e_start="69047" e_stop="69171"/>
            <exon e_start="69407" e_stop="69519"/>
            <exon e_start="69631" e_stop="70051"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="1.000" acc_prob="1.000" e_score="1.000"/>
          <exon-intron don_prob="0.994" acc_prob="0.987" e_score="1.000"/>
          <exon-intron don_prob="0.995" acc_prob="0.768" e_score="1.000"/>
          <exon-intron don_prob="0.983" acc_prob="0.964" e_score="1.000"/>
          <exon-intron don_prob="1.000" acc_prob="0.989" e_score="1.000"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="65449" e_stop="65689" e_length="241"/>
          </exon>
          <intron i_serial="1" don_prob="1.000" acc_prob="1.000">
            <gDNA_intron_boundary i_start="65690" i_stop="66849" i_length="1160"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="66850" e_stop="67021" e_length="172"/>
          </exon>
          <intron i_serial="2" don_prob="0.994" acc_prob="0.987">
            <gDNA_intron_boundary i_start="67022" i_stop="67764" i_length="743"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="67765" e_stop="68305" e_length="541"/>
          </exon>
          <intron i_serial="3" don_prob="0.995" acc_prob="0.768">
            <gDNA_intron_boundary i_start="68306" i_stop="69046" i_length="741"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="69047" e_stop="69171" e_length="125"/>
          </exon>
          <intron i_serial="4" don_prob="0.983" acc_prob="0.964">
            <gDNA_intron_boundary i_start="69172" i_stop="69406" i_length="235"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="69407" e_stop="69519" e_length="113"/>
          </exon>
          <intron i_serial="5" don_prob="1.000" acc_prob="0.989">
            <gDNA_intron_boundary i_start="69520" i_stop="69630" i_length="111"/>
          </intron>
          <exon e_serial="6" e_score="1.000">
            <gDNA_exon_boundary e_start="69631" e_stop="70051" e_length="421"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="65449" stop="65689"/>
              <exon start="66850" stop="67021"/>
              <exon start="67765" stop="68185"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E721018" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="65460" stop="65689"/>
              <exon start="66850" stop="67021"/>
              <exon start="67765" stop="68305"/>
              <exon start="69047" stop="69171"/>
              <exon start="69407" stop="69519"/>
              <exon start="69631" stop="70021"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E747059" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="65463" stop="65689"/>
              <exon start="66850" stop="67021"/>
              <exon start="67765" stop="68124"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E721102" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="65463" stop="65689"/>
              <exon start="66850" stop="67021"/>
              <exon start="67765" stop="68067"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E418914" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="65463" stop="65689"/>
              <exon start="66850" stop="67002"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E443104" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="65465" stop="65689"/>
              <exon start="66850" stop="67021"/>
              <exon start="67765" stop="67924"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E202248" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="65477" stop="65689"/>
              <exon start="66850" stop="67021"/>
              <exon start="67765" stop="67993"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E557549" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="65488" stop="65689"/>
              <exon start="66850" stop="67021"/>
              <exon start="67765" stop="68179"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E329089" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="65488" stop="65689"/>
              <exon start="66850" stop="67021"/>
              <exon start="67765" stop="68021"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E325708" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="65489" stop="65689"/>
              <exon start="66850" stop="67021"/>
              <exon start="67765" stop="68031"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E306010" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="65528" stop="65689"/>
              <exon start="66850" stop="66971"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E624064" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="65531" stop="65689"/>
              <exon start="66850" stop="67021"/>
              <exon start="67765" stop="67934"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E579738" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="65538" stop="65689"/>
              <exon start="66850" stop="67021"/>
              <exon start="67765" stop="67995"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E275589" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="65539" stop="65689"/>
              <exon start="66850" stop="67021"/>
              <exon start="67765" stop="68222"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E463322" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="65539" stop="65689"/>
              <exon start="66850" stop="67021"/>
              <exon start="67765" stop="68065"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E477905" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="65539" stop="65689"/>
              <exon start="66850" stop="67021"/>
              <exon start="67765" stop="67962"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E606855" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="65539" stop="65689"/>
              <exon start="66850" stop="66933"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E338733" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="65540" stop="65689"/>
              <exon start="66850" stop="67021"/>
              <exon start="67765" stop="68089"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E341514" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="65540" stop="65689"/>
              <exon start="66850" stop="67021"/>
              <exon start="67765" stop="68001"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E270090" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="65540" stop="65689"/>
              <exon start="66850" stop="67021"/>
              <exon start="67765" stop="67997"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E335622" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="65540" stop="65689"/>
              <exon start="66850" stop="67021"/>
              <exon start="67765" stop="67991"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E232047" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="65540" stop="65689"/>
              <exon start="66850" stop="67021"/>
              <exon start="67765" stop="67988"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E484045" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="65540" stop="65689"/>
              <exon start="66850" stop="67021"/>
              <exon start="67765" stop="67934"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E284248" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="65540" stop="65689"/>
              <exon start="66850" stop="67021"/>
              <exon start="67765" stop="67922"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E317598" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="65540" stop="65689"/>
              <exon start="66850" stop="67021"/>
              <exon start="67765" stop="67863"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E336580" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="65540" stop="65689"/>
              <exon start="66850" stop="67021"/>
              <exon start="67765" stop="67845"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E471275" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="65540" stop="65689"/>
              <exon start="66850" stop="67021"/>
              <exon start="67765" stop="67813"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E341207" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="65540" stop="65689"/>
              <exon start="66850" stop="66932"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E339737" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="65541" stop="65689"/>
              <exon start="66850" stop="67021"/>
              <exon start="67765" stop="68305"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E702568" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="65541" stop="65689"/>
              <exon start="66850" stop="67021"/>
              <exon start="67765" stop="68206"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E213527" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="65541" stop="65689"/>
              <exon start="66850" stop="67021"/>
              <exon start="67765" stop="68091"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E484833" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="65541" stop="65689"/>
              <exon start="66850" stop="67021"/>
              <exon start="67765" stop="68087"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E202311" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="65541" stop="65689"/>
              <exon start="66850" stop="67021"/>
              <exon start="67765" stop="68034"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E213170" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="65541" stop="65689"/>
              <exon start="66850" stop="67021"/>
              <exon start="67765" stop="68011"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E299312" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="65541" stop="65689"/>
              <exon start="66850" stop="67021"/>
              <exon start="67765" stop="68004"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E403048" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="65541" stop="65689"/>
              <exon start="66850" stop="67021"/>
              <exon start="67765" stop="67907"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E270719" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="65542" stop="65689"/>
              <exon start="66850" stop="67021"/>
              <exon start="67765" stop="67961"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E325847" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="65542" stop="65689"/>
              <exon start="66850" stop="67021"/>
              <exon start="67765" stop="67934"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E334813" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="65542" stop="65689"/>
              <exon start="66850" stop="67021"/>
              <exon start="67765" stop="67845"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E367392" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="65543" stop="65689"/>
              <exon start="66850" stop="67021"/>
              <exon start="67765" stop="68267"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E703584" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
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              <exon start="66850" stop="67021"/>
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            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E410236" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
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            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E208144" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
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            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E205702" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
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            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E204751" strand="+"/>
          </PGS_line>
          <PGS_line>
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            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E703103" strand="+"/>
          </PGS_line>
          <PGS_line>
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            <referenceDNA id="SGN-E478201" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
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            <referenceDNA id="SGN-E704572" strand="+"/>
          </PGS_line>
          <PGS_line>
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            <referenceDNA id="SGN-E408588" strand="+"/>
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          <PGS_line>
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            <referenceDNA id="SGN-E439236" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
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              <exon start="66850" stop="67002"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E274128" strand="+"/>
          </PGS_line>
          <PGS_line>
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            <referenceDNA id="SGN-E400513" strand="+"/>
          </PGS_line>
          <PGS_line>
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            </gDNA_exon_coordinates>
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          </PGS_line>
          <PGS_line>
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            <referenceDNA id="SGN-E327943" strand="+"/>
          </PGS_line>
          <PGS_line>
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          <PGS_line>
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          <PGS_line>
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          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="68168" stop="68305"/>
              <exon start="69047" stop="69171"/>
              <exon start="69407" stop="69519"/>
              <exon start="69631" stop="69823"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E268988" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="68235" stop="68305"/>
              <exon start="69047" stop="69171"/>
              <exon start="69407" stop="69519"/>
              <exon start="69631" stop="70041"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E353122" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="68235" stop="68305"/>
              <exon start="69047" stop="69171"/>
              <exon start="69407" stop="69519"/>
              <exon start="69631" stop="70028"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E349959" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="68235" stop="68305"/>
              <exon start="69047" stop="69171"/>
              <exon start="69407" stop="69519"/>
              <exon start="69631" stop="69972"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E350172" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="68265" stop="68305"/>
              <exon start="69047" stop="69171"/>
              <exon start="69407" stop="69519"/>
              <exon start="69631" stop="70037"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E214434" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="68274" stop="68305"/>
              <exon start="69047" stop="69171"/>
              <exon start="69407" stop="69519"/>
              <exon start="69631" stop="70038"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E410038" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="68276" stop="68305"/>
              <exon start="69047" stop="69171"/>
              <exon start="69407" stop="69519"/>
              <exon start="69631" stop="69965"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E242912" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="68276" stop="68305"/>
              <exon start="69047" stop="69171"/>
              <exon start="69407" stop="69519"/>
              <exon start="69631" stop="69934"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E243545" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="68276" stop="68305"/>
              <exon start="69047" stop="69171"/>
              <exon start="69407" stop="69519"/>
              <exon start="69631" stop="69932"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E240060" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="68276" stop="68305"/>
              <exon start="69047" stop="69171"/>
              <exon start="69407" stop="69519"/>
              <exon start="69631" stop="69825"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E242655" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="68276" stop="68305"/>
              <exon start="69047" stop="69171"/>
              <exon start="69407" stop="69519"/>
              <exon start="69631" stop="69760"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E242080" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="68276" stop="68305"/>
              <exon start="69047" stop="69171"/>
              <exon start="69407" stop="69519"/>
              <exon start="69631" stop="69724"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E240970" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="68276" stop="68305"/>
              <exon start="69047" stop="69171"/>
              <exon start="69407" stop="69434"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E233512" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="68277" stop="68305"/>
              <exon start="69047" stop="69171"/>
              <exon start="69407" stop="69519"/>
              <exon start="69631" stop="70013"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E353837" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="68277" stop="68305"/>
              <exon start="69047" stop="69171"/>
              <exon start="69407" stop="69519"/>
              <exon start="69631" stop="69731"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E238057" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="69050" stop="69171"/>
              <exon start="69407" stop="69519"/>
              <exon start="69631" stop="70022"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E337036" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="69107" stop="69171"/>
              <exon start="69407" stop="69519"/>
              <exon start="69631" stop="69986"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E269085" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="69131" stop="69171"/>
              <exon start="69407" stop="69519"/>
              <exon start="69631" stop="70001"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E433751" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="69148" stop="69171"/>
              <exon start="69407" stop="69519"/>
              <exon start="69631" stop="70051"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E249185" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="69160" stop="69171"/>
              <exon start="69407" stop="69519"/>
              <exon start="69631" stop="70036"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E297153" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="69420" stop="69519"/>
              <exon start="69631" stop="69973"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E241436" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="69420" stop="69519"/>
              <exon start="69631" stop="69930"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E243444" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="69436" stop="69519"/>
              <exon start="69631" stop="70035"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E232459" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="69437" stop="69519"/>
              <exon start="69631" stop="70001"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E404181" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="69438" stop="69519"/>
              <exon start="69631" stop="70017"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E267323" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="69677" stop="70035"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E232383" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="11" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>TGGAGTTGAAGCAGGTCGCTTCTAAGTACTGGGCCTTCGCCCTTTCCTATAAAAAGCCGTTACGTCTCTCCAGTAAGTCATCTCAGCCAACTGGAGTTTATTCTTCTCTCTGTTTTTAGTAAGTACGAAACCCTTTTCTGTAAATCCAAAAAAAATTCCGATGGCGATGAGGCGTGTAGCTTCTACAGCAGCTCGTGCTATTGCTTCACCTTCATCCTTAGTTTTTACCAGAGAACTTCAG : GCTTCCCCTGGCCCCAAAAAGATTGTGGGTGTTTTCTACAAAGCAAATGAATATGCTGAAATGAACCCCAACTTTTTGGGCTGTGCAGAAAATGCCTTGGGGATACGTGAATGGTTAGAGTCTAAAGGTCATCAGTACATAGTCACTCCTGACAAAGAAGGACCAGATTGTG : AGCTTGAGAAACACATTCCTGATCTCCATGTGTTGATTTCGACCCCTTTTCATCCTGCCTATGTCACGGCTGAAAGGATCAAGAAGGCAAAAAATCTACAACTTCTGCTGACAGCTGGAATTGGATCAGATCATGTTGATCTGAAAGCTGCTGCTGCTGCTGGATTGACAGTAGCAGAGGTCACTGGAAGCAATACTGTCTCAGTTGCGGAAGATGAACTGATGCGAATCTTAATTCTTGTCCGAAATTTCTTACCTGGACATCATCAGGTTATCAATGGGGAGTGGAATGTTGCTGCAATTGCGCACAGAGCTTATGATTTGGAAGGCAAGACTGTTGGAACTGTTGGTGCAGGACGTATTGGCAGACTTTTACTCCAGCGATTGAAGCCATTTAACTGTAATCTACTTTACCATGACCGTCTTAAGATGGATTCTGAGCTAGAGAATCAAATTGGAGCAAAGTTTGAGGAAGATCTCGATAAGATGCTCTCGAAATGTGACATAGTGGTCATCAATACGCCTCTTACAGAGAAAACAAA : AGGAATGTTTGACAAGGAAAGAATTGCAAAGTTGAAGAAGGGAGTTCTAATTGTAAACAATGCTCGAGGAGCAATTATGGACACTCAAGCAGTTGTTGATGCTTGTAACAGCGGTCATATTGCAG : GATACAGTGGAGATGTTTGGTACCCACAACCAGCTCCCAAGGACCATCTATGGCGTTACATGCCAAACCAAGCTATGACTCCTCACATTTCTGGGACTACCATTGATGCACAG : TTGAGGTATGCAGCTGGAACAAAGGATATGTTGGACAGGTACTTCAAGGGTGAGGATTTCCCTGCTGAAAATTACATTGTCAAGGATGGGGAATTGGCACCTCAGTATCGCTAAATTATTTATGTATAGAGTTGTGTCTAGATTTCTGTGTTAAATAAACTGGCAAGCCGTGTCTTCAATAAGCTGATAAAATTGGCTACTTTATGTTCTTCTAGAACTCTAATGCAGTTTTTCTCCGGGTTAGCTGTAACTTTTGTGATGGAAACATATGTCCTCTTCTGTGATGGAGGTCTATGTATGATCCTCCAGTGTCTTTCTTGAGTCTATAACTGAACTTCCTTGCTGTGGTAGTTGTACTGGTGTTCCTGGACATTTTATGTTTTAAAAAAAATTATCTTCTTGTTTGCTAGTATTTGTTGCA</gDNA_template>
            <first_frame> W  S  *  S  R  S  L  L  S  T  G  P  S  P  F  P  I  K  S  R  Y  V  S  P  V  S  H  L  S  Q  L  E  F  I  L  L  S  V  F  S  K  Y  E  T  L  F  C  K  S  K  K  N  S  D  G  D  E  A  C  S  F  Y  S  S  S  C  Y  C  F  T  F  I  L  S  F  Y  Q  R  T  S   : G  F  P  W  P  Q  K  D  C  G  C  F  L  Q  S  K  *  I  C  *  N  E  P  Q  L  F  G  L  C  R  K  C  L  G  D  T  *  M  V  R  V  *  R  S  S  V  H  S  H  S  *  Q  R  R  T  R  L  * :   A  *  E  T  H  S  *  S  P  C  V  D  F  D  P  F  S  S  C  L  C  H  G  *  K  D  Q  E  G  K  K  S  T  T  S  A  D  S  W  N  W  I  R  S  C  *  S  E  S  C  C  C  C  W  I  D  S  S  R  G  H  W  K  Q  Y  C  L  S  C  G  R  *  T  D  A  N  L  N  S  C  P  K  F  L  T  W  T  S  S  G  Y  Q  W  G  V  E  C  C  C  N  C  A  Q  S  L  *  F  G  R  Q  D  C  W  N  C  W  C  R  T  Y  W  Q  T  F  T  P  A  I  E  A  I  *  L  *  S  T  L  P  *  P  S  *  D  G  F  *  A  R  E  S  N  W  S  K  V  *  G  R  S  R  *  D  A  L  E  M  *  H  S  G  H  Q  Y  A  S  Y  R  E  N  K  :  R  N  V  *  Q  G  K  N  C  K  V  E  E  G  S  S  N  C  K  Q  C  S  R  S  N  Y  G  H  S  S  S  C  *  C  L  *  Q  R  S  Y  C  R :   I  Q  W  R  C  L  V  P  T  T  S  S  Q  G  P  S  M  A  L  H  A  K  P  S  Y  D  S  S  H  F  W  D  Y  H  *  C  T   : V  E  V  C  S  W  N  K  G  Y  V  G  Q  V  L  Q  G  *  G  F  P  C  *  K  L  H  C  Q  G  W  G  I  G  T  S  V  S  L  N  Y  L  C  I  E  L  C  L  D  F  C  V  K  *  T  G  K  P  C  L  Q  *  A  D  K  I  G  Y  F  M  F  F  *  N  S  N  A  V  F  L  R  V  S  C  N  F  C  D  G  N  I  C  P  L  L  *  W  R  S  M  Y  D  P  P  V  S  F  L  S  L  *  L  N  F  L  A  V  V  V  V  L  V  F  L  D  I  L  C  F  K  K  N  Y  L  L  V  C  *  Y  L  L   </first_frame>
            <second_frame>  G  V  E  A  G  R  F  *  V  L  G  L  R  P  F  L  *  K  A  V  T  S  L  Q  *  V  I  S  A  N  W  S  L  F  F  S  L  F  L  V  S  T  K  P  F  S  V  N  P  K  K  I  P  M  A  M  R  R  V  A  S  T  A  A  R  A  I  A  S  P  S  S  L  V  F  T  R  E  L  Q  :  A  S  P  G  P  K  K  I  V  G  V  F  Y  K  A  N  E  Y  A  E  M  N  P  N  F  L  G  C  A  E  N  A  L  G  I  R  E  W  L  E  S  K  G  H  Q  Y  I  V  T  P  D  K  E  G  P  D  C   : E  L  E  K  H  I  P  D  L  H  V  L  I  S  T  P  F  H  P  A  Y  V  T  A  E  R  I  K  K  A  K  N  L  Q  L  L  L  T  A  G  I  G  S  D  H  V  D  L  K  A  A  A  A  A  G  L  T  V  A  E  V  T  G  S  N  T  V  S  V  A  E  D  E  L  M  R  I  L  I  L  V  R  N  F  L  P  G  H  H  Q  V  I  N  G  E  W  N  V  A  A  I  A  H  R  A  Y  D  L  E  G  K  T  V  G  T  V  G  A  G  R  I  G  R  L  L  L  Q  R  L  K  P  F  N  C  N  L  L  Y  H  D  R  L  K  M  D  S  E  L  E  N  Q  I  G  A  K  F  E  E  D  L  D  K  M  L  S  K  C  D  I  V  V  I  N  T  P  L  T  E  K  T  K :   G  M  F  D  K  E  R  I  A  K  L  K  K  G  V  L  I  V  N  N  A  R  G  A  I  M  D  T  Q  A  V  V  D  A  C  N  S  G  H  I  A   : G  Y  S  G  D  V  W  Y  P  Q  P  A  P  K  D  H  L  W  R  Y  M  P  N  Q  A  M  T  P  H  I  S  G  T  T  I  D  A  Q  :  L  R  Y  A  A  G  T  K  D  M  L  D  R  Y  F  K  G  E  D  F  P  A  E  N  Y  I  V  K  D  G  E  L  A  P  Q  Y  R  *  I  I  Y  V  *  S  C  V  *  I  S  V  L  N  K  L  A  S  R  V  F  N  K  L  I  K  L  A  T  L  C  S  S  R  T  L  M  Q  F  F  S  G  L  A  V  T  F  V  M  E  T  Y  V  L  F  C  D  G  G  L  C  M  I  L  Q  C  L  S  *  V  Y  N  *  T  S  L  L  W  *  L  Y  W  C  S  W  T  F  Y  V  L  K  K  I  I  F  L  F  A  S  I  C  C  </second_frame>
            <third_frame>   E  L  K  Q  V  A  S  K  Y  W  A  F  A  L  S  Y  K  K  P  L  R  L  S  S  K  S  S  Q  P  T  G  V  Y  S  S  L  C  F  *  *  V  R  N  P  F  L  *  I  Q  K  K  F  R  W  R  *  G  V  *  L  L  Q  Q  L  V  L  L  L  H  L  H  P  *  F  L  P  E  N  F  R :   L  P  L  A  P  K  R  L  W  V  F  S  T  K  Q  M  N  M  L  K  *  T  P  T  F  W  A  V  Q  K  M  P  W  G  Y  V  N  G  *  S  L  K  V  I  S  T  *  S  L  L  T  K  K  D  Q  I  V  :  S  L  R  N  T  F  L  I  S  M  C  *  F  R  P  L  F  I  L  P  M  S  R  L  K  G  S  R  R  Q  K  I  Y  N  F  C  *  Q  L  E  L  D  Q  I  M  L  I  *  K  L  L  L  L  L  D  *  Q  *  Q  R  S  L  E  A  I  L  S  Q  L  R  K  M  N  *  C  E  S  *  F  L  S  E  I  S  Y  L  D  I  I  R  L  S  M  G  S  G  M  L  L  Q  L  R  T  E  L  M  I  W  K  A  R  L  L  E  L  L  V  Q  D  V  L  A  D  F  Y  S  S  D  *  S  H  L  T  V  I  Y  F  T  M  T  V  L  R  W  I  L  S  *  R  I  K  L  E  Q  S  L  R  K  I  S  I  R  C  S  R  N  V  T  *  W  S  S  I  R  L  L  Q  R  K  Q   : K  E  C  L  T  R  K  E  L  Q  S  *  R  R  E  F  *  L  *  T  M  L  E  E  Q  L  W  T  L  K  Q  L  L  M  L  V  T  A  V  I  L  Q  :  D  T  V  E  M  F  G  T  H  N  Q  L  P  R  T  I  Y  G  V  T  C  Q  T  K  L  *  L  L  T  F  L  G  L  P  L  M  H  S :   *  G  M  Q  L  E  Q  R  I  C  W  T  G  T  S  R  V  R  I  S  L  L  K  I  T  L  S  R  M  G  N  W  H  L  S  I  A  K  L  F  M  Y  R  V  V  S  R  F  L  C  *  I  N  W  Q  A  V  S  S  I  S  *  *  N  W  L  L  Y  V  L  L  E  L  *  C  S  F  S  P  G  *  L  *  L  L  *  W  K  H  M  S  S  S  V  M  E  V  Y  V  *  S  S  S  V  F  L  E  S  I  T  E  L  P  C  C  G  S  C  T  G  V  P  G  H  F  M  F  *  K  K  L  S  S  C  L  L  V  F  V  A </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02HBa0236E02.1" strand="+"/>
                <serials PGL_serial="11" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="65525" stop="65689"/>
                    <exon start="66850" stop="67021"/>
                    <exon start="67765" stop="68305"/>
                    <exon start="69047" stop="69171"/>
                    <exon start="69407" stop="69519"/>
                    <exon start="69631" stop="69744"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>1227</number_coding_nucleotides>
                  <number_encoded_amino_acids>409</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>VISANWSLFFSLFLVSTKPFSVNPKKIPMAMRRVASTAARAIASPSSLVFTRELQASPGPKKIVGVFYKANEYAEMNPNFLGCAENALGIREWLESKGHQYIVTPDKEGPDCELEKHIPDLHVLISTPFHPAYVTAERIKKAKNLQLLLTAGIGSDHVDLKAAAAAGLTVAEVTGSNTVSVAEDELMRILILVRNFLPGHHQVINGEWNVAAIAHRAYDLEGKTVGTVGAGRIGRLLLQRLKPFNCNLLYHDRLKMDSELENQIGAKFEEDLDKMLSKCDIVVINTPLTEKTKGMFDKERIAKLKKGVLIVNNARGAIMDTQAVVDACNSGHIAGYSGDVWYPQPAPKDHLWRYMPNQAMTPHISGTTIDAQLRYAAGTKDMLDRYFKGEDFPAENYIVKDGELAPQYR*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="2">
          <exon_coordinates>
            <exon e_start="65449" e_stop="65689"/>
            <exon e_start="66850" e_stop="67021"/>
            <exon e_start="67765" e_stop="68305"/>
            <exon e_start="69047" e_stop="69171"/>
            <exon e_start="69407" e_stop="69519"/>
            <exon e_start="69631" e_stop="70020"/>
            <exon e_start="70083" e_stop="70107"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="1.000" acc_prob="1.000" e_score="1.000"/>
          <exon-intron don_prob="0.994" acc_prob="0.987" e_score="1.000"/>
          <exon-intron don_prob="0.995" acc_prob="0.768" e_score="1.000"/>
          <exon-intron don_prob="0.983" acc_prob="0.964" e_score="1.000"/>
          <exon-intron don_prob="1.000" acc_prob="0.989" e_score="1.000"/>
          <exon-intron don_prob="0.000" acc_prob="0.321" e_score="1.000"/>
          <exon-only e_score="0.640"/>
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            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E353837" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="68277" stop="68305"/>
              <exon start="69047" stop="69171"/>
              <exon start="69407" stop="69519"/>
              <exon start="69631" stop="69731"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E238057" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="69062" stop="69171"/>
              <exon start="69407" stop="69519"/>
              <exon start="69631" stop="70020"/>
              <exon start="70083" stop="70107"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E423814" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="69107" stop="69171"/>
              <exon start="69407" stop="69519"/>
              <exon start="69631" stop="69986"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E269085" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="69131" stop="69171"/>
              <exon start="69407" stop="69519"/>
              <exon start="69631" stop="70001"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E433751" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="69420" stop="69519"/>
              <exon start="69631" stop="69973"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E241436" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="69420" stop="69519"/>
              <exon start="69631" stop="69930"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E243444" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="69437" stop="69519"/>
              <exon start="69631" stop="70001"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E404181" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="69438" stop="69519"/>
              <exon start="69631" stop="70017"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E267323" strand="-"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="11" AGS_serial="2" gDNA_strand="+"/>
          <translation>
            <gDNA_template>TGGAGTTGAAGCAGGTCGCTTCTAAGTACTGGGCCTTCGCCCTTTCCTATAAAAAGCCGTTACGTCTCTCCAGTAAGTCATCTCAGCCAACTGGAGTTTATTCTTCTCTCTGTTTTTAGTAAGTACGAAACCCTTTTCTGTAAATCCAAAAAAAATTCCGATGGCGATGAGGCGTGTAGCTTCTACAGCAGCTCGTGCTATTGCTTCACCTTCATCCTTAGTTTTTACCAGAGAACTTCAG : GCTTCCCCTGGCCCCAAAAAGATTGTGGGTGTTTTCTACAAAGCAAATGAATATGCTGAAATGAACCCCAACTTTTTGGGCTGTGCAGAAAATGCCTTGGGGATACGTGAATGGTTAGAGTCTAAAGGTCATCAGTACATAGTCACTCCTGACAAAGAAGGACCAGATTGTG : AGCTTGAGAAACACATTCCTGATCTCCATGTGTTGATTTCGACCCCTTTTCATCCTGCCTATGTCACGGCTGAAAGGATCAAGAAGGCAAAAAATCTACAACTTCTGCTGACAGCTGGAATTGGATCAGATCATGTTGATCTGAAAGCTGCTGCTGCTGCTGGATTGACAGTAGCAGAGGTCACTGGAAGCAATACTGTCTCAGTTGCGGAAGATGAACTGATGCGAATCTTAATTCTTGTCCGAAATTTCTTACCTGGACATCATCAGGTTATCAATGGGGAGTGGAATGTTGCTGCAATTGCGCACAGAGCTTATGATTTGGAAGGCAAGACTGTTGGAACTGTTGGTGCAGGACGTATTGGCAGACTTTTACTCCAGCGATTGAAGCCATTTAACTGTAATCTACTTTACCATGACCGTCTTAAGATGGATTCTGAGCTAGAGAATCAAATTGGAGCAAAGTTTGAGGAAGATCTCGATAAGATGCTCTCGAAATGTGACATAGTGGTCATCAATACGCCTCTTACAGAGAAAACAAA : AGGAATGTTTGACAAGGAAAGAATTGCAAAGTTGAAGAAGGGAGTTCTAATTGTAAACAATGCTCGAGGAGCAATTATGGACACTCAAGCAGTTGTTGATGCTTGTAACAGCGGTCATATTGCAG : GATACAGTGGAGATGTTTGGTACCCACAACCAGCTCCCAAGGACCATCTATGGCGTTACATGCCAAACCAAGCTATGACTCCTCACATTTCTGGGACTACCATTGATGCACAG : TTGAGGTATGCAGCTGGAACAAAGGATATGTTGGACAGGTACTTCAAGGGTGAGGATTTCCCTGCTGAAAATTACATTGTCAAGGATGGGGAATTGGCACCTCAGTATCGCTAAATTATTTATGTATAGAGTTGTGTCTAGATTTCTGTGTTAAATAAACTGGCAAGCCGTGTCTTCAATAAGCTGATAAAATTGGCTACTTTATGTTCTTCTAGAACTCTAATGCAGTTTTTCTCCGGGTTAGCTGTAACTTTTGTGATGGAAACATATGTCCTCTTCTGTGATGGAGGTCTATGTATGATCCTCCAGTGTCTTTCTTGAGTCTATAACTGAACTTCCTTGCTGTGGTAGTTGTACTGGTGTTCCTGGACATTTTATGTTTTAAAAAAA : GAAAAACTTGGCAAAAATAATGAAA</gDNA_template>
            <first_frame> W  S  *  S  R  S  L  L  S  T  G  P  S  P  F  P  I  K  S  R  Y  V  S  P  V  S  H  L  S  Q  L  E  F  I  L  L  S  V  F  S  K  Y  E  T  L  F  C  K  S  K  K  N  S  D  G  D  E  A  C  S  F  Y  S  S  S  C  Y  C  F  T  F  I  L  S  F  Y  Q  R  T  S   : G  F  P  W  P  Q  K  D  C  G  C  F  L  Q  S  K  *  I  C  *  N  E  P  Q  L  F  G  L  C  R  K  C  L  G  D  T  *  M  V  R  V  *  R  S  S  V  H  S  H  S  *  Q  R  R  T  R  L  * :   A  *  E  T  H  S  *  S  P  C  V  D  F  D  P  F  S  S  C  L  C  H  G  *  K  D  Q  E  G  K  K  S  T  T  S  A  D  S  W  N  W  I  R  S  C  *  S  E  S  C  C  C  C  W  I  D  S  S  R  G  H  W  K  Q  Y  C  L  S  C  G  R  *  T  D  A  N  L  N  S  C  P  K  F  L  T  W  T  S  S  G  Y  Q  W  G  V  E  C  C  C  N  C  A  Q  S  L  *  F  G  R  Q  D  C  W  N  C  W  C  R  T  Y  W  Q  T  F  T  P  A  I  E  A  I  *  L  *  S  T  L  P  *  P  S  *  D  G  F  *  A  R  E  S  N  W  S  K  V  *  G  R  S  R  *  D  A  L  E  M  *  H  S  G  H  Q  Y  A  S  Y  R  E  N  K  :  R  N  V  *  Q  G  K  N  C  K  V  E  E  G  S  S  N  C  K  Q  C  S  R  S  N  Y  G  H  S  S  S  C  *  C  L  *  Q  R  S  Y  C  R :   I  Q  W  R  C  L  V  P  T  T  S  S  Q  G  P  S  M  A  L  H  A  K  P  S  Y  D  S  S  H  F  W  D  Y  H  *  C  T   : V  E  V  C  S  W  N  K  G  Y  V  G  Q  V  L  Q  G  *  G  F  P  C  *  K  L  H  C  Q  G  W  G  I  G  T  S  V  S  L  N  Y  L  C  I  E  L  C  L  D  F  C  V  K  *  T  G  K  P  C  L  Q  *  A  D  K  I  G  Y  F  M  F  F  *  N  S  N  A  V  F  L  R  V  S  C  N  F  C  D  G  N  I  C  P  L  L  *  W  R  S  M  Y  D  P  P  V  S  F  L  S  L  *  L  N  F  L  A  V  V  V  V  L  V  F  L  D  I  L  C  F  K  K   : R  K  T  W  Q  K  *  *   </first_frame>
            <second_frame>  G  V  E  A  G  R  F  *  V  L  G  L  R  P  F  L  *  K  A  V  T  S  L  Q  *  V  I  S  A  N  W  S  L  F  F  S  L  F  L  V  S  T  K  P  F  S  V  N  P  K  K  I  P  M  A  M  R  R  V  A  S  T  A  A  R  A  I  A  S  P  S  S  L  V  F  T  R  E  L  Q  :  A  S  P  G  P  K  K  I  V  G  V  F  Y  K  A  N  E  Y  A  E  M  N  P  N  F  L  G  C  A  E  N  A  L  G  I  R  E  W  L  E  S  K  G  H  Q  Y  I  V  T  P  D  K  E  G  P  D  C   : E  L  E  K  H  I  P  D  L  H  V  L  I  S  T  P  F  H  P  A  Y  V  T  A  E  R  I  K  K  A  K  N  L  Q  L  L  L  T  A  G  I  G  S  D  H  V  D  L  K  A  A  A  A  A  G  L  T  V  A  E  V  T  G  S  N  T  V  S  V  A  E  D  E  L  M  R  I  L  I  L  V  R  N  F  L  P  G  H  H  Q  V  I  N  G  E  W  N  V  A  A  I  A  H  R  A  Y  D  L  E  G  K  T  V  G  T  V  G  A  G  R  I  G  R  L  L  L  Q  R  L  K  P  F  N  C  N  L  L  Y  H  D  R  L  K  M  D  S  E  L  E  N  Q  I  G  A  K  F  E  E  D  L  D  K  M  L  S  K  C  D  I  V  V  I  N  T  P  L  T  E  K  T  K :   G  M  F  D  K  E  R  I  A  K  L  K  K  G  V  L  I  V  N  N  A  R  G  A  I  M  D  T  Q  A  V  V  D  A  C  N  S  G  H  I  A   : G  Y  S  G  D  V  W  Y  P  Q  P  A  P  K  D  H  L  W  R  Y  M  P  N  Q  A  M  T  P  H  I  S  G  T  T  I  D  A  Q  :  L  R  Y  A  A  G  T  K  D  M  L  D  R  Y  F  K  G  E  D  F  P  A  E  N  Y  I  V  K  D  G  E  L  A  P  Q  Y  R  *  I  I  Y  V  *  S  C  V  *  I  S  V  L  N  K  L  A  S  R  V  F  N  K  L  I  K  L  A  T  L  C  S  S  R  T  L  M  Q  F  F  S  G  L  A  V  T  F  V  M  E  T  Y  V  L  F  C  D  G  G  L  C  M  I  L  Q  C  L  S  *  V  Y  N  *  T  S  L  L  W  *  L  Y  W  C  S  W  T  F  Y  V  L  K  K  :  E  K  L  G  K  N  N  E  </second_frame>
            <third_frame>   E  L  K  Q  V  A  S  K  Y  W  A  F  A  L  S  Y  K  K  P  L  R  L  S  S  K  S  S  Q  P  T  G  V  Y  S  S  L  C  F  *  *  V  R  N  P  F  L  *  I  Q  K  K  F  R  W  R  *  G  V  *  L  L  Q  Q  L  V  L  L  L  H  L  H  P  *  F  L  P  E  N  F  R :   L  P  L  A  P  K  R  L  W  V  F  S  T  K  Q  M  N  M  L  K  *  T  P  T  F  W  A  V  Q  K  M  P  W  G  Y  V  N  G  *  S  L  K  V  I  S  T  *  S  L  L  T  K  K  D  Q  I  V  :  S  L  R  N  T  F  L  I  S  M  C  *  F  R  P  L  F  I  L  P  M  S  R  L  K  G  S  R  R  Q  K  I  Y  N  F  C  *  Q  L  E  L  D  Q  I  M  L  I  *  K  L  L  L  L  L  D  *  Q  *  Q  R  S  L  E  A  I  L  S  Q  L  R  K  M  N  *  C  E  S  *  F  L  S  E  I  S  Y  L  D  I  I  R  L  S  M  G  S  G  M  L  L  Q  L  R  T  E  L  M  I  W  K  A  R  L  L  E  L  L  V  Q  D  V  L  A  D  F  Y  S  S  D  *  S  H  L  T  V  I  Y  F  T  M  T  V  L  R  W  I  L  S  *  R  I  K  L  E  Q  S  L  R  K  I  S  I  R  C  S  R  N  V  T  *  W  S  S  I  R  L  L  Q  R  K  Q   : K  E  C  L  T  R  K  E  L  Q  S  *  R  R  E  F  *  L  *  T  M  L  E  E  Q  L  W  T  L  K  Q  L  L  M  L  V  T  A  V  I  L  Q  :  D  T  V  E  M  F  G  T  H  N  Q  L  P  R  T  I  Y  G  V  T  C  Q  T  K  L  *  L  L  T  F  L  G  L  P  L  M  H  S :   *  G  M  Q  L  E  Q  R  I  C  W  T  G  T  S  R  V  R  I  S  L  L  K  I  T  L  S  R  M  G  N  W  H  L  S  I  A  K  L  F  M  Y  R  V  V  S  R  F  L  C  *  I  N  W  Q  A  V  S  S  I  S  *  *  N  W  L  L  Y  V  L  L  E  L  *  C  S  F  S  P  G  *  L  *  L  L  *  W  K  H  M  S  S  S  V  M  E  V  Y  V  *  S  S  S  V  F  L  E  S  I  T  E  L  P  C  C  G  S  C  T  G  V  P  G  H  F  M  F  *  K  K :   K  N  L  A  K  I  M  K </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02HBa0236E02.1" strand="+"/>
                <serials PGL_serial="11" AGS_serial="2" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="65525" stop="65689"/>
                    <exon start="66850" stop="67021"/>
                    <exon start="67765" stop="68305"/>
                    <exon start="69047" stop="69171"/>
                    <exon start="69407" stop="69519"/>
                    <exon start="69631" stop="69744"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>1227</number_coding_nucleotides>
                  <number_encoded_amino_acids>409</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>VISANWSLFFSLFLVSTKPFSVNPKKIPMAMRRVASTAARAIASPSSLVFTRELQASPGPKKIVGVFYKANEYAEMNPNFLGCAENALGIREWLESKGHQYIVTPDKEGPDCELEKHIPDLHVLISTPFHPAYVTAERIKKAKNLQLLLTAGIGSDHVDLKAAAAAGLTVAEVTGSNTVSVAEDELMRILILVRNFLPGHHQVINGEWNVAAIAHRAYDLEGKTVGTVGAGRIGRLLLQRLKPFNCNLLYHDRLKMDSELENQIGAKFEEDLDKMLSKCDIVVINTPLTEKTKGMFDKERIAKLKKGVLIVNNARGAIMDTQAVVDACNSGHIAGYSGDVWYPQPAPKDHLWRYMPNQAMTPHISGTTIDAQLRYAAGTKDMLDRYFKGEDFPAENYIVKDGELAPQYR*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="3">
          <exon_coordinates>
            <exon e_start="65449" e_stop="65689"/>
            <exon e_start="66850" e_stop="67021"/>
            <exon e_start="67765" e_stop="68305"/>
            <exon e_start="69047" e_stop="69171"/>
            <exon e_start="69407" e_stop="69519"/>
            <exon e_start="69631" e_stop="69980"/>
            <exon e_start="70083" e_stop="70110"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="1.000" acc_prob="1.000" e_score="1.000"/>
          <exon-intron don_prob="0.994" acc_prob="0.987" e_score="1.000"/>
          <exon-intron don_prob="0.995" acc_prob="0.768" e_score="1.000"/>
          <exon-intron don_prob="0.983" acc_prob="0.964" e_score="1.000"/>
          <exon-intron don_prob="1.000" acc_prob="0.989" e_score="1.000"/>
          <exon-intron don_prob="0.000" acc_prob="0.321" e_score="1.000"/>
          <exon-only e_score="0.607"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="65449" e_stop="65689" e_length="241"/>
          </exon>
          <intron i_serial="1" don_prob="1.000" acc_prob="1.000">
            <gDNA_intron_boundary i_start="65690" i_stop="66849" i_length="1160"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="66850" e_stop="67021" e_length="172"/>
          </exon>
          <intron i_serial="2" don_prob="0.994" acc_prob="0.987">
            <gDNA_intron_boundary i_start="67022" i_stop="67764" i_length="743"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="67765" e_stop="68305" e_length="541"/>
          </exon>
          <intron i_serial="3" don_prob="0.995" acc_prob="0.768">
            <gDNA_intron_boundary i_start="68306" i_stop="69046" i_length="741"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="69047" e_stop="69171" e_length="125"/>
          </exon>
          <intron i_serial="4" don_prob="0.983" acc_prob="0.964">
            <gDNA_intron_boundary i_start="69172" i_stop="69406" i_length="235"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="69407" e_stop="69519" e_length="113"/>
          </exon>
          <intron i_serial="5" don_prob="1.000" acc_prob="0.989">
            <gDNA_intron_boundary i_start="69520" i_stop="69630" i_length="111"/>
          </intron>
          <exon e_serial="6" e_score="1.000">
            <gDNA_exon_boundary e_start="69631" e_stop="69980" e_length="350"/>
          </exon>
          <intron i_serial="6" don_prob="0.000" acc_prob="0.321">
            <gDNA_intron_boundary i_start="69981" i_stop="70082" i_length="102"/>
          </intron>
          <exon e_serial="7" e_score="0.607">
            <gDNA_exon_boundary e_start="70083" e_stop="70110" e_length="28"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="65449" stop="65689"/>
              <exon start="66850" stop="67021"/>
              <exon start="67765" stop="68185"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E721018" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="65463" stop="65689"/>
              <exon start="66850" stop="67021"/>
              <exon start="67765" stop="68124"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E721102" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="65463" stop="65689"/>
              <exon start="66850" stop="67021"/>
              <exon start="67765" stop="68067"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E418914" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="65463" stop="65689"/>
              <exon start="66850" stop="67002"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E443104" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="65465" stop="65689"/>
              <exon start="66850" stop="67021"/>
              <exon start="67765" stop="67924"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E202248" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="65477" stop="65689"/>
              <exon start="66850" stop="67021"/>
              <exon start="67765" stop="67993"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E557549" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="65488" stop="65689"/>
              <exon start="66850" stop="67021"/>
              <exon start="67765" stop="68179"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E329089" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="65488" stop="65689"/>
              <exon start="66850" stop="67021"/>
              <exon start="67765" stop="68021"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E325708" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="65489" stop="65689"/>
              <exon start="66850" stop="67021"/>
              <exon start="67765" stop="68031"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E306010" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="65528" stop="65689"/>
              <exon start="66850" stop="66971"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E624064" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="65531" stop="65689"/>
              <exon start="66850" stop="67021"/>
              <exon start="67765" stop="67934"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E579738" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
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          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="66997" stop="67021"/>
              <exon start="67765" stop="68305"/>
              <exon start="69047" stop="69171"/>
              <exon start="69407" stop="69519"/>
              <exon start="69631" stop="69649"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E261013" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="66997" stop="67021"/>
              <exon start="67765" stop="68270"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E255533" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="67002" stop="67021"/>
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            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E404059" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="67765" stop="68305"/>
              <exon start="69047" stop="69126"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E560184" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="67828" stop="68305"/>
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            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E332612" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="67847" stop="68260"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E206669" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="67848" stop="68305"/>
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              <exon start="69631" stop="69664"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E261870" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="67848" stop="68305"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E258818" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="67851" stop="68305"/>
              <exon start="69047" stop="69171"/>
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              <exon start="69631" stop="69711"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E402856" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="67851" stop="68305"/>
              <exon start="69047" stop="69107"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E400960" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="67852" stop="68080"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E261763" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="67866" stop="68305"/>
              <exon start="69047" stop="69107"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E220993" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="67878" stop="68305"/>
              <exon start="69047" stop="69107"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E235196" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="67880" stop="68305"/>
              <exon start="69047" stop="69077"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E323451" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="67887" stop="68234"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E720468" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="67905" stop="68305"/>
              <exon start="69047" stop="69069"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E471535" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="67905" stop="68303"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E471532" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="67912" stop="68305"/>
              <exon start="69047" stop="69107"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E234283" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="67925" stop="68305"/>
              <exon start="69047" stop="69171"/>
              <exon start="69407" stop="69519"/>
              <exon start="69631" stop="69753"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E258539" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="67928" stop="68305"/>
              <exon start="69047" stop="69171"/>
              <exon start="69407" stop="69513"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E260604" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="67931" stop="68305"/>
              <exon start="69047" stop="69171"/>
              <exon start="69407" stop="69519"/>
              <exon start="69631" stop="69695"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E456668" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="67931" stop="68305"/>
              <exon start="69047" stop="69171"/>
              <exon start="69407" stop="69519"/>
              <exon start="69631" stop="69650"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E452526" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="67934" stop="68305"/>
              <exon start="69047" stop="69107"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E234524" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="67936" stop="68305"/>
              <exon start="69047" stop="69171"/>
              <exon start="69407" stop="69519"/>
              <exon start="69631" stop="69870"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E708489" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="67937" stop="68305"/>
              <exon start="69047" stop="69171"/>
              <exon start="69407" stop="69519"/>
              <exon start="69631" stop="69971"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E555030" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="67937" stop="68305"/>
              <exon start="69047" stop="69171"/>
              <exon start="69407" stop="69519"/>
              <exon start="69631" stop="69908"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E552235" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="67937" stop="68305"/>
              <exon start="69047" stop="69171"/>
              <exon start="69407" stop="69519"/>
              <exon start="69631" stop="69755"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E553296" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="67979" stop="68305"/>
              <exon start="69047" stop="69171"/>
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              <exon start="69631" stop="69675"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E233270" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="67979" stop="68305"/>
              <exon start="69047" stop="69171"/>
              <exon start="69407" stop="69485"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E235775" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="67979" stop="68305"/>
              <exon start="69047" stop="69171"/>
              <exon start="69407" stop="69432"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E240658" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="67979" stop="68305"/>
              <exon start="69047" stop="69149"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E239661" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="67979" stop="68305"/>
              <exon start="69047" stop="69109"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E242830" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="67988" stop="68305"/>
              <exon start="69047" stop="69171"/>
              <exon start="69407" stop="69435"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E289438" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="67991" stop="68305"/>
              <exon start="69047" stop="69171"/>
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              <exon start="69631" stop="69664"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E710244" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="68005" stop="68305"/>
              <exon start="69047" stop="69107"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E234038" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="68016" stop="68305"/>
              <exon start="69047" stop="69171"/>
              <exon start="69407" stop="69494"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E228246" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="68016" stop="68305"/>
              <exon start="69047" stop="69113"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E240506" strand="+"/>
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          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="68044" stop="68305"/>
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            <referenceDNA id="SGN-E265006" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="68049" stop="68305"/>
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            <referenceDNA id="SGN-E311228" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="68089" stop="68305"/>
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            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E276295" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="68089" stop="68305"/>
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            <referenceDNA id="SGN-E276289" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="68101" stop="68305"/>
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            <referenceDNA id="SGN-E336433" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="68103" stop="68305"/>
              <exon start="69047" stop="69168"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E247482" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="68168" stop="68305"/>
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            <referenceDNA id="SGN-E268988" strand="+"/>
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          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="68235" stop="68305"/>
              <exon start="69047" stop="69171"/>
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              <exon start="69631" stop="69972"/>
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            <referenceDNA id="SGN-E350172" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="68276" stop="68305"/>
              <exon start="69047" stop="69171"/>
              <exon start="69407" stop="69519"/>
              <exon start="69631" stop="69965"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E242912" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="68276" stop="68305"/>
              <exon start="69047" stop="69171"/>
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              <exon start="69631" stop="69934"/>
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            <referenceDNA id="SGN-E243545" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="68276" stop="68305"/>
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              <exon start="69407" stop="69519"/>
              <exon start="69631" stop="69932"/>
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            <referenceDNA id="SGN-E240060" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="68276" stop="68305"/>
              <exon start="69047" stop="69171"/>
              <exon start="69407" stop="69519"/>
              <exon start="69631" stop="69825"/>
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            <referenceDNA id="SGN-E242655" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="68276" stop="68305"/>
              <exon start="69047" stop="69171"/>
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              <exon start="69631" stop="69760"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E242080" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="68276" stop="68305"/>
              <exon start="69047" stop="69171"/>
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              <exon start="69631" stop="69724"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E240970" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="68276" stop="68305"/>
              <exon start="69047" stop="69171"/>
              <exon start="69407" stop="69434"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E233512" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="68277" stop="68305"/>
              <exon start="69047" stop="69171"/>
              <exon start="69407" stop="69519"/>
              <exon start="69631" stop="69731"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E238057" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="68285" stop="68305"/>
              <exon start="69047" stop="69171"/>
              <exon start="69407" stop="69519"/>
              <exon start="69631" stop="69980"/>
              <exon start="70083" stop="70110"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E552969" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="69420" stop="69519"/>
              <exon start="69631" stop="69973"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E241436" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="69420" stop="69519"/>
              <exon start="69631" stop="69930"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E243444" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="11" AGS_serial="3" gDNA_strand="+"/>
          <translation>
            <gDNA_template>TGGAGTTGAAGCAGGTCGCTTCTAAGTACTGGGCCTTCGCCCTTTCCTATAAAAAGCCGTTACGTCTCTCCAGTAAGTCATCTCAGCCAACTGGAGTTTATTCTTCTCTCTGTTTTTAGTAAGTACGAAACCCTTTTCTGTAAATCCAAAAAAAATTCCGATGGCGATGAGGCGTGTAGCTTCTACAGCAGCTCGTGCTATTGCTTCACCTTCATCCTTAGTTTTTACCAGAGAACTTCAG : GCTTCCCCTGGCCCCAAAAAGATTGTGGGTGTTTTCTACAAAGCAAATGAATATGCTGAAATGAACCCCAACTTTTTGGGCTGTGCAGAAAATGCCTTGGGGATACGTGAATGGTTAGAGTCTAAAGGTCATCAGTACATAGTCACTCCTGACAAAGAAGGACCAGATTGTG : AGCTTGAGAAACACATTCCTGATCTCCATGTGTTGATTTCGACCCCTTTTCATCCTGCCTATGTCACGGCTGAAAGGATCAAGAAGGCAAAAAATCTACAACTTCTGCTGACAGCTGGAATTGGATCAGATCATGTTGATCTGAAAGCTGCTGCTGCTGCTGGATTGACAGTAGCAGAGGTCACTGGAAGCAATACTGTCTCAGTTGCGGAAGATGAACTGATGCGAATCTTAATTCTTGTCCGAAATTTCTTACCTGGACATCATCAGGTTATCAATGGGGAGTGGAATGTTGCTGCAATTGCGCACAGAGCTTATGATTTGGAAGGCAAGACTGTTGGAACTGTTGGTGCAGGACGTATTGGCAGACTTTTACTCCAGCGATTGAAGCCATTTAACTGTAATCTACTTTACCATGACCGTCTTAAGATGGATTCTGAGCTAGAGAATCAAATTGGAGCAAAGTTTGAGGAAGATCTCGATAAGATGCTCTCGAAATGTGACATAGTGGTCATCAATACGCCTCTTACAGAGAAAACAAA : AGGAATGTTTGACAAGGAAAGAATTGCAAAGTTGAAGAAGGGAGTTCTAATTGTAAACAATGCTCGAGGAGCAATTATGGACACTCAAGCAGTTGTTGATGCTTGTAACAGCGGTCATATTGCAG : GATACAGTGGAGATGTTTGGTACCCACAACCAGCTCCCAAGGACCATCTATGGCGTTACATGCCAAACCAAGCTATGACTCCTCACATTTCTGGGACTACCATTGATGCACAG : TTGAGGTATGCAGCTGGAACAAAGGATATGTTGGACAGGTACTTCAAGGGTGAGGATTTCCCTGCTGAAAATTACATTGTCAAGGATGGGGAATTGGCACCTCAGTATCGCTAAATTATTTATGTATAGAGTTGTGTCTAGATTTCTGTGTTAAATAAACTGGCAAGCCGTGTCTTCAATAAGCTGATAAAATTGGCTACTTTATGTTCTTCTAGAACTCTAATGCAGTTTTTCTCCGGGTTAGCTGTAACTTTTGTGATGGAAACATATGTCCTCTTCTGTGATGGAGGTCTATGTATGATCCTCCAGTGTCTTTCTTGAGTCTATAACTGAACTTCCTTGCTGTGGTA : GAAAAACTTGGCAAAAATAATGAAATGA</gDNA_template>
            <first_frame> W  S  *  S  R  S  L  L  S  T  G  P  S  P  F  P  I  K  S  R  Y  V  S  P  V  S  H  L  S  Q  L  E  F  I  L  L  S  V  F  S  K  Y  E  T  L  F  C  K  S  K  K  N  S  D  G  D  E  A  C  S  F  Y  S  S  S  C  Y  C  F  T  F  I  L  S  F  Y  Q  R  T  S   : G  F  P  W  P  Q  K  D  C  G  C  F  L  Q  S  K  *  I  C  *  N  E  P  Q  L  F  G  L  C  R  K  C  L  G  D  T  *  M  V  R  V  *  R  S  S  V  H  S  H  S  *  Q  R  R  T  R  L  * :   A  *  E  T  H  S  *  S  P  C  V  D  F  D  P  F  S  S  C  L  C  H  G  *  K  D  Q  E  G  K  K  S  T  T  S  A  D  S  W  N  W  I  R  S  C  *  S  E  S  C  C  C  C  W  I  D  S  S  R  G  H  W  K  Q  Y  C  L  S  C  G  R  *  T  D  A  N  L  N  S  C  P  K  F  L  T  W  T  S  S  G  Y  Q  W  G  V  E  C  C  C  N  C  A  Q  S  L  *  F  G  R  Q  D  C  W  N  C  W  C  R  T  Y  W  Q  T  F  T  P  A  I  E  A  I  *  L  *  S  T  L  P  *  P  S  *  D  G  F  *  A  R  E  S  N  W  S  K  V  *  G  R  S  R  *  D  A  L  E  M  *  H  S  G  H  Q  Y  A  S  Y  R  E  N  K  :  R  N  V  *  Q  G  K  N  C  K  V  E  E  G  S  S  N  C  K  Q  C  S  R  S  N  Y  G  H  S  S  S  C  *  C  L  *  Q  R  S  Y  C  R :   I  Q  W  R  C  L  V  P  T  T  S  S  Q  G  P  S  M  A  L  H  A  K  P  S  Y  D  S  S  H  F  W  D  Y  H  *  C  T   : V  E  V  C  S  W  N  K  G  Y  V  G  Q  V  L  Q  G  *  G  F  P  C  *  K  L  H  C  Q  G  W  G  I  G  T  S  V  S  L  N  Y  L  C  I  E  L  C  L  D  F  C  V  K  *  T  G  K  P  C  L  Q  *  A  D  K  I  G  Y  F  M  F  F  *  N  S  N  A  V  F  L  R  V  S  C  N  F  C  D  G  N  I  C  P  L  L  *  W  R  S  M  Y  D  P  P  V  S  F  L  S  L  *  L  N  F  L  A  V  V  :  E  K  L  G  K  N  N  E  M  </first_frame>
            <second_frame>  G  V  E  A  G  R  F  *  V  L  G  L  R  P  F  L  *  K  A  V  T  S  L  Q  *  V  I  S  A  N  W  S  L  F  F  S  L  F  L  V  S  T  K  P  F  S  V  N  P  K  K  I  P  M  A  M  R  R  V  A  S  T  A  A  R  A  I  A  S  P  S  S  L  V  F  T  R  E  L  Q  :  A  S  P  G  P  K  K  I  V  G  V  F  Y  K  A  N  E  Y  A  E  M  N  P  N  F  L  G  C  A  E  N  A  L  G  I  R  E  W  L  E  S  K  G  H  Q  Y  I  V  T  P  D  K  E  G  P  D  C   : E  L  E  K  H  I  P  D  L  H  V  L  I  S  T  P  F  H  P  A  Y  V  T  A  E  R  I  K  K  A  K  N  L  Q  L  L  L  T  A  G  I  G  S  D  H  V  D  L  K  A  A  A  A  A  G  L  T  V  A  E  V  T  G  S  N  T  V  S  V  A  E  D  E  L  M  R  I  L  I  L  V  R  N  F  L  P  G  H  H  Q  V  I  N  G  E  W  N  V  A  A  I  A  H  R  A  Y  D  L  E  G  K  T  V  G  T  V  G  A  G  R  I  G  R  L  L  L  Q  R  L  K  P  F  N  C  N  L  L  Y  H  D  R  L  K  M  D  S  E  L  E  N  Q  I  G  A  K  F  E  E  D  L  D  K  M  L  S  K  C  D  I  V  V  I  N  T  P  L  T  E  K  T  K :   G  M  F  D  K  E  R  I  A  K  L  K  K  G  V  L  I  V  N  N  A  R  G  A  I  M  D  T  Q  A  V  V  D  A  C  N  S  G  H  I  A   : G  Y  S  G  D  V  W  Y  P  Q  P  A  P  K  D  H  L  W  R  Y  M  P  N  Q  A  M  T  P  H  I  S  G  T  T  I  D  A  Q  :  L  R  Y  A  A  G  T  K  D  M  L  D  R  Y  F  K  G  E  D  F  P  A  E  N  Y  I  V  K  D  G  E  L  A  P  Q  Y  R  *  I  I  Y  V  *  S  C  V  *  I  S  V  L  N  K  L  A  S  R  V  F  N  K  L  I  K  L  A  T  L  C  S  S  R  T  L  M  Q  F  F  S  G  L  A  V  T  F  V  M  E  T  Y  V  L  F  C  D  G  G  L  C  M  I  L  Q  C  L  S  *  V  Y  N  *  T  S  L  L  W  * :   K  N  L  A  K  I  M  K  * </second_frame>
            <third_frame>   E  L  K  Q  V  A  S  K  Y  W  A  F  A  L  S  Y  K  K  P  L  R  L  S  S  K  S  S  Q  P  T  G  V  Y  S  S  L  C  F  *  *  V  R  N  P  F  L  *  I  Q  K  K  F  R  W  R  *  G  V  *  L  L  Q  Q  L  V  L  L  L  H  L  H  P  *  F  L  P  E  N  F  R :   L  P  L  A  P  K  R  L  W  V  F  S  T  K  Q  M  N  M  L  K  *  T  P  T  F  W  A  V  Q  K  M  P  W  G  Y  V  N  G  *  S  L  K  V  I  S  T  *  S  L  L  T  K  K  D  Q  I  V  :  S  L  R  N  T  F  L  I  S  M  C  *  F  R  P  L  F  I  L  P  M  S  R  L  K  G  S  R  R  Q  K  I  Y  N  F  C  *  Q  L  E  L  D  Q  I  M  L  I  *  K  L  L  L  L  L  D  *  Q  *  Q  R  S  L  E  A  I  L  S  Q  L  R  K  M  N  *  C  E  S  *  F  L  S  E  I  S  Y  L  D  I  I  R  L  S  M  G  S  G  M  L  L  Q  L  R  T  E  L  M  I  W  K  A  R  L  L  E  L  L  V  Q  D  V  L  A  D  F  Y  S  S  D  *  S  H  L  T  V  I  Y  F  T  M  T  V  L  R  W  I  L  S  *  R  I  K  L  E  Q  S  L  R  K  I  S  I  R  C  S  R  N  V  T  *  W  S  S  I  R  L  L  Q  R  K  Q   : K  E  C  L  T  R  K  E  L  Q  S  *  R  R  E  F  *  L  *  T  M  L  E  E  Q  L  W  T  L  K  Q  L  L  M  L  V  T  A  V  I  L  Q  :  D  T  V  E  M  F  G  T  H  N  Q  L  P  R  T  I  Y  G  V  T  C  Q  T  K  L  *  L  L  T  F  L  G  L  P  L  M  H  S :   *  G  M  Q  L  E  Q  R  I  C  W  T  G  T  S  R  V  R  I  S  L  L  K  I  T  L  S  R  M  G  N  W  H  L  S  I  A  K  L  F  M  Y  R  V  V  S  R  F  L  C  *  I  N  W  Q  A  V  S  S  I  S  *  *  N  W  L  L  Y  V  L  L  E  L  *  C  S  F  S  P  G  *  L  *  L  L  *  W  K  H  M  S  S  S  V  M  E  V  Y  V  *  S  S  S  V  F  L  E  S  I  T  E  L  P  C  C  G   : R  K  T  W  Q  K  *  *  N   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02HBa0236E02.1" strand="+"/>
                <serials PGL_serial="11" AGS_serial="3" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="65525" stop="65689"/>
                    <exon start="66850" stop="67021"/>
                    <exon start="67765" stop="68305"/>
                    <exon start="69047" stop="69171"/>
                    <exon start="69407" stop="69519"/>
                    <exon start="69631" stop="69744"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>1227</number_coding_nucleotides>
                  <number_encoded_amino_acids>409</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>VISANWSLFFSLFLVSTKPFSVNPKKIPMAMRRVASTAARAIASPSSLVFTRELQASPGPKKIVGVFYKANEYAEMNPNFLGCAENALGIREWLESKGHQYIVTPDKEGPDCELEKHIPDLHVLISTPFHPAYVTAERIKKAKNLQLLLTAGIGSDHVDLKAAAAAGLTVAEVTGSNTVSVAEDELMRILILVRNFLPGHHQVINGEWNVAAIAHRAYDLEGKTVGTVGAGRIGRLLLQRLKPFNCNLLYHDRLKMDSELENQIGAKFEEDLDKMLSKCDIVVINTPLTEKTKGMFDKERIAKLKKGVLIVNNARGAIMDTQAVVDACNSGHIAGYSGDVWYPQPAPKDHLWRYMPNQAMTPHISGTTIDAQLRYAAGTKDMLDRYFKGEDFPAENYIVKDGELAPQYR*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="4">
          <exon_coordinates>
            <exon e_start="65449" e_stop="65689"/>
            <exon e_start="66850" e_stop="67021"/>
            <exon e_start="67765" e_stop="68305"/>
            <exon e_start="69047" e_stop="69329"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="1.000" acc_prob="1.000" e_score="1.000"/>
          <exon-intron don_prob="0.994" acc_prob="0.987" e_score="1.000"/>
          <exon-intron don_prob="0.995" acc_prob="0.768" e_score="1.000"/>
          <exon-only e_score="0.986"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="65449" e_stop="65689" e_length="241"/>
          </exon>
          <intron i_serial="1" don_prob="1.000" acc_prob="1.000">
            <gDNA_intron_boundary i_start="65690" i_stop="66849" i_length="1160"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="66850" e_stop="67021" e_length="172"/>
          </exon>
          <intron i_serial="2" don_prob="0.994" acc_prob="0.987">
            <gDNA_intron_boundary i_start="67022" i_stop="67764" i_length="743"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="67765" e_stop="68305" e_length="541"/>
          </exon>
          <intron i_serial="3" don_prob="0.995" acc_prob="0.768">
            <gDNA_intron_boundary i_start="68306" i_stop="69046" i_length="741"/>
          </intron>
          <exon e_serial="4" e_score="0.986">
            <gDNA_exon_boundary e_start="69047" e_stop="69329" e_length="283"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="65449" stop="65689"/>
              <exon start="66850" stop="67021"/>
              <exon start="67765" stop="68185"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E721018" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="65463" stop="65689"/>
              <exon start="66850" stop="67021"/>
              <exon start="67765" stop="68124"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E721102" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="65463" stop="65689"/>
              <exon start="66850" stop="67021"/>
              <exon start="67765" stop="68067"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E418914" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="65463" stop="65689"/>
              <exon start="66850" stop="67002"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E443104" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="65465" stop="65689"/>
              <exon start="66850" stop="67021"/>
              <exon start="67765" stop="67924"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E202248" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="65477" stop="65689"/>
              <exon start="66850" stop="67021"/>
              <exon start="67765" stop="67993"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E557549" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="65488" stop="65689"/>
              <exon start="66850" stop="67021"/>
              <exon start="67765" stop="68179"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E329089" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="65488" stop="65689"/>
              <exon start="66850" stop="67021"/>
              <exon start="67765" stop="68021"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E325708" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="65489" stop="65689"/>
              <exon start="66850" stop="67021"/>
              <exon start="67765" stop="68031"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E306010" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="65528" stop="65689"/>
              <exon start="66850" stop="66971"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E624064" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="65531" stop="65689"/>
              <exon start="66850" stop="67021"/>
              <exon start="67765" stop="67934"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E579738" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="65538" stop="65689"/>
              <exon start="66850" stop="67021"/>
              <exon start="67765" stop="67995"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E275589" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="65539" stop="65689"/>
              <exon start="66850" stop="67021"/>
              <exon start="67765" stop="68222"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E463322" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="65539" stop="65689"/>
              <exon start="66850" stop="67021"/>
              <exon start="67765" stop="68065"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E477905" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="65539" stop="65689"/>
              <exon start="66850" stop="67021"/>
              <exon start="67765" stop="67962"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E606855" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="65539" stop="65689"/>
              <exon start="66850" stop="66933"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E338733" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="65540" stop="65689"/>
              <exon start="66850" stop="67021"/>
              <exon start="67765" stop="68089"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E341514" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="65540" stop="65689"/>
              <exon start="66850" stop="67021"/>
              <exon start="67765" stop="68001"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E270090" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="65540" stop="65689"/>
              <exon start="66850" stop="67021"/>
              <exon start="67765" stop="67997"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E335622" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="65540" stop="65689"/>
              <exon start="66850" stop="67021"/>
              <exon start="67765" stop="67991"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E232047" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="65540" stop="65689"/>
              <exon start="66850" stop="67021"/>
              <exon start="67765" stop="67988"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E484045" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="65540" stop="65689"/>
              <exon start="66850" stop="67021"/>
              <exon start="67765" stop="67934"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E284248" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="65540" stop="65689"/>
              <exon start="66850" stop="67021"/>
              <exon start="67765" stop="67922"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E317598" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="65540" stop="65689"/>
              <exon start="66850" stop="67021"/>
              <exon start="67765" stop="67863"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E336580" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="65540" stop="65689"/>
              <exon start="66850" stop="67021"/>
              <exon start="67765" stop="67845"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E471275" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="65540" stop="65689"/>
              <exon start="66850" stop="67021"/>
              <exon start="67765" stop="67813"/>
            </gDNA_exon_coordinates>
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            <gDNA_exon_coordinates>
              <exon start="68149" stop="68305"/>
              <exon start="69047" stop="69329"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E262678" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="11" AGS_serial="4" gDNA_strand="+"/>
          <translation>
            <gDNA_template>TGGAGTTGAAGCAGGTCGCTTCTAAGTACTGGGCCTTCGCCCTTTCCTATAAAAAGCCGTTACGTCTCTCCAGTAAGTCATCTCAGCCAACTGGAGTTTATTCTTCTCTCTGTTTTTAGTAAGTACGAAACCCTTTTCTGTAAATCCAAAAAAAATTCCGATGGCGATGAGGCGTGTAGCTTCTACAGCAGCTCGTGCTATTGCTTCACCTTCATCCTTAGTTTTTACCAGAGAACTTCAG : GCTTCCCCTGGCCCCAAAAAGATTGTGGGTGTTTTCTACAAAGCAAATGAATATGCTGAAATGAACCCCAACTTTTTGGGCTGTGCAGAAAATGCCTTGGGGATACGTGAATGGTTAGAGTCTAAAGGTCATCAGTACATAGTCACTCCTGACAAAGAAGGACCAGATTGTG : AGCTTGAGAAACACATTCCTGATCTCCATGTGTTGATTTCGACCCCTTTTCATCCTGCCTATGTCACGGCTGAAAGGATCAAGAAGGCAAAAAATCTACAACTTCTGCTGACAGCTGGAATTGGATCAGATCATGTTGATCTGAAAGCTGCTGCTGCTGCTGGATTGACAGTAGCAGAGGTCACTGGAAGCAATACTGTCTCAGTTGCGGAAGATGAACTGATGCGAATCTTAATTCTTGTCCGAAATTTCTTACCTGGACATCATCAGGTTATCAATGGGGAGTGGAATGTTGCTGCAATTGCGCACAGAGCTTATGATTTGGAAGGCAAGACTGTTGGAACTGTTGGTGCAGGACGTATTGGCAGACTTTTACTCCAGCGATTGAAGCCATTTAACTGTAATCTACTTTACCATGACCGTCTTAAGATGGATTCTGAGCTAGAGAATCAAATTGGAGCAAAGTTTGAGGAAGATCTCGATAAGATGCTCTCGAAATGTGACATAGTGGTCATCAATACGCCTCTTACAGAGAAAACAAA : AGGAATGTTTGACAAGGAAAGAATTGCAAAGTTGAAGAAGGGAGTTCTAATTGTAAACAATGCTCGAGGAGCAATTATGGACACTCAAGCAGTTGTTGATGCTTGTAACAGCGGTCATATTGCAGGTATTTTAACATAACTTGAACACATCATCCAGAGATGAGCCCTCAGCCTTAATATCAATTGAACACACCATTATATTTTTTTCTTCAATTCTTGCTTGTTTCTTTTCTTCAATATATTTTATCGACATTTGGAAGTAGTTCCATATCTTGTGGAATTG</gDNA_template>
            <first_frame> W  S  *  S  R  S  L  L  S  T  G  P  S  P  F  P  I  K  S  R  Y  V  S  P  V  S  H  L  S  Q  L  E  F  I  L  L  S  V  F  S  K  Y  E  T  L  F  C  K  S  K  K  N  S  D  G  D  E  A  C  S  F  Y  S  S  S  C  Y  C  F  T  F  I  L  S  F  Y  Q  R  T  S   : G  F  P  W  P  Q  K  D  C  G  C  F  L  Q  S  K  *  I  C  *  N  E  P  Q  L  F  G  L  C  R  K  C  L  G  D  T  *  M  V  R  V  *  R  S  S  V  H  S  H  S  *  Q  R  R  T  R  L  * :   A  *  E  T  H  S  *  S  P  C  V  D  F  D  P  F  S  S  C  L  C  H  G  *  K  D  Q  E  G  K  K  S  T  T  S  A  D  S  W  N  W  I  R  S  C  *  S  E  S  C  C  C  C  W  I  D  S  S  R  G  H  W  K  Q  Y  C  L  S  C  G  R  *  T  D  A  N  L  N  S  C  P  K  F  L  T  W  T  S  S  G  Y  Q  W  G  V  E  C  C  C  N  C  A  Q  S  L  *  F  G  R  Q  D  C  W  N  C  W  C  R  T  Y  W  Q  T  F  T  P  A  I  E  A  I  *  L  *  S  T  L  P  *  P  S  *  D  G  F  *  A  R  E  S  N  W  S  K  V  *  G  R  S  R  *  D  A  L  E  M  *  H  S  G  H  Q  Y  A  S  Y  R  E  N  K  :  R  N  V  *  Q  G  K  N  C  K  V  E  E  G  S  S  N  C  K  Q  C  S  R  S  N  Y  G  H  S  S  S  C  *  C  L  *  Q  R  S  Y  C  R  Y  F  N  I  T  *  T  H  H  P  E  M  S  P  Q  P  *  Y  Q  L  N  T  P  L  Y  F  F  L  Q  F  L  L  V  S  F  L  Q  Y  I  L  S  T  F  G  S  S  S  I  S  C  G  I  </first_frame>
            <second_frame>  G  V  E  A  G  R  F  *  V  L  G  L  R  P  F  L  *  K  A  V  T  S  L  Q  *  V  I  S  A  N  W  S  L  F  F  S  L  F  L  V  S  T  K  P  F  S  V  N  P  K  K  I  P  M  A  M  R  R  V  A  S  T  A  A  R  A  I  A  S  P  S  S  L  V  F  T  R  E  L  Q  :  A  S  P  G  P  K  K  I  V  G  V  F  Y  K  A  N  E  Y  A  E  M  N  P  N  F  L  G  C  A  E  N  A  L  G  I  R  E  W  L  E  S  K  G  H  Q  Y  I  V  T  P  D  K  E  G  P  D  C   : E  L  E  K  H  I  P  D  L  H  V  L  I  S  T  P  F  H  P  A  Y  V  T  A  E  R  I  K  K  A  K  N  L  Q  L  L  L  T  A  G  I  G  S  D  H  V  D  L  K  A  A  A  A  A  G  L  T  V  A  E  V  T  G  S  N  T  V  S  V  A  E  D  E  L  M  R  I  L  I  L  V  R  N  F  L  P  G  H  H  Q  V  I  N  G  E  W  N  V  A  A  I  A  H  R  A  Y  D  L  E  G  K  T  V  G  T  V  G  A  G  R  I  G  R  L  L  L  Q  R  L  K  P  F  N  C  N  L  L  Y  H  D  R  L  K  M  D  S  E  L  E  N  Q  I  G  A  K  F  E  E  D  L  D  K  M  L  S  K  C  D  I  V  V  I  N  T  P  L  T  E  K  T  K :   G  M  F  D  K  E  R  I  A  K  L  K  K  G  V  L  I  V  N  N  A  R  G  A  I  M  D  T  Q  A  V  V  D  A  C  N  S  G  H  I  A  G  I  L  T  *  L  E  H  I  I  Q  R  *  A  L  S  L  N  I  N  *  T  H  H  Y  I  F  F  F  N  S  C  L  F  L  F  F  N  I  F  Y  R  H  L  E  V  V  P  Y  L  V  E  L </second_frame>
            <third_frame>   E  L  K  Q  V  A  S  K  Y  W  A  F  A  L  S  Y  K  K  P  L  R  L  S  S  K  S  S  Q  P  T  G  V  Y  S  S  L  C  F  *  *  V  R  N  P  F  L  *  I  Q  K  K  F  R  W  R  *  G  V  *  L  L  Q  Q  L  V  L  L  L  H  L  H  P  *  F  L  P  E  N  F  R :   L  P  L  A  P  K  R  L  W  V  F  S  T  K  Q  M  N  M  L  K  *  T  P  T  F  W  A  V  Q  K  M  P  W  G  Y  V  N  G  *  S  L  K  V  I  S  T  *  S  L  L  T  K  K  D  Q  I  V  :  S  L  R  N  T  F  L  I  S  M  C  *  F  R  P  L  F  I  L  P  M  S  R  L  K  G  S  R  R  Q  K  I  Y  N  F  C  *  Q  L  E  L  D  Q  I  M  L  I  *  K  L  L  L  L  L  D  *  Q  *  Q  R  S  L  E  A  I  L  S  Q  L  R  K  M  N  *  C  E  S  *  F  L  S  E  I  S  Y  L  D  I  I  R  L  S  M  G  S  G  M  L  L  Q  L  R  T  E  L  M  I  W  K  A  R  L  L  E  L  L  V  Q  D  V  L  A  D  F  Y  S  S  D  *  S  H  L  T  V  I  Y  F  T  M  T  V  L  R  W  I  L  S  *  R  I  K  L  E  Q  S  L  R  K  I  S  I  R  C  S  R  N  V  T  *  W  S  S  I  R  L  L  Q  R  K  Q   : K  E  C  L  T  R  K  E  L  Q  S  *  R  R  E  F  *  L  *  T  M  L  E  E  Q  L  W  T  L  K  Q  L  L  M  L  V  T  A  V  I  L  Q  V  F  *  H  N  L  N  T  S  S  R  D  E  P  S  A  L  I  S  I  E  H  T  I  I  F  F  S  S  I  L  A  C  F  F  S  S  I  Y  F  I  D  I  W  K  *  F  H  I  L  W  N   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02HBa0236E02.1" strand="+"/>
                <serials PGL_serial="11" AGS_serial="4" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="65525" stop="65689"/>
                    <exon start="66850" stop="67021"/>
                    <exon start="67765" stop="68305"/>
                    <exon start="69047" stop="69185"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>1014</number_coding_nucleotides>
                  <number_encoded_amino_acids>338</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>VISANWSLFFSLFLVSTKPFSVNPKKIPMAMRRVASTAARAIASPSSLVFTRELQASPGPKKIVGVFYKANEYAEMNPNFLGCAENALGIREWLESKGHQYIVTPDKEGPDCELEKHIPDLHVLISTPFHPAYVTAERIKKAKNLQLLLTAGIGSDHVDLKAAAAAGLTVAEVTGSNTVSVAEDELMRILILVRNFLPGHHQVINGEWNVAAIAHRAYDLEGKTVGTVGAGRIGRLLLQRLKPFNCNLLYHDRLKMDSELENQIGAKFEEDLDKMLSKCDIVVINTPLTEKTKGMFDKERIAKLKKGVLIVNNARGAIMDTQAVVDACNSGHIAGILT*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="5">
          <exon_coordinates>
            <exon e_start="67764" e_stop="68305"/>
            <exon e_start="69047" e_stop="69171"/>
            <exon e_start="69407" e_stop="69519"/>
            <exon e_start="69631" e_stop="70051"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.995" acc_prob="0.768" e_score="0.993"/>
          <exon-intron don_prob="0.983" acc_prob="0.964" e_score="1.000"/>
          <exon-intron don_prob="1.000" acc_prob="0.989" e_score="1.000"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.993">
            <gDNA_exon_boundary e_start="67764" e_stop="68305" e_length="542"/>
          </exon>
          <intron i_serial="1" don_prob="0.995" acc_prob="0.768">
            <gDNA_intron_boundary i_start="68306" i_stop="69046" i_length="741"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="69047" e_stop="69171" e_length="125"/>
          </exon>
          <intron i_serial="2" don_prob="0.983" acc_prob="0.964">
            <gDNA_intron_boundary i_start="69172" i_stop="69406" i_length="235"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="69407" e_stop="69519" e_length="113"/>
          </exon>
          <intron i_serial="3" don_prob="1.000" acc_prob="0.989">
            <gDNA_intron_boundary i_start="69520" i_stop="69630" i_length="111"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="69631" e_stop="70051" e_length="421"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="67764" stop="67995"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E239941" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="67765" stop="68305"/>
              <exon start="69047" stop="69126"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E560184" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="67828" stop="68305"/>
              <exon start="69047" stop="69171"/>
              <exon start="69407" stop="69519"/>
              <exon start="69631" stop="69664"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E332612" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="67847" stop="68260"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E206669" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="67848" stop="68305"/>
              <exon start="69047" stop="69171"/>
              <exon start="69407" stop="69519"/>
              <exon start="69631" stop="69664"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E261870" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="67848" stop="68305"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E258818" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="67851" stop="68305"/>
              <exon start="69047" stop="69171"/>
              <exon start="69407" stop="69519"/>
              <exon start="69631" stop="69711"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E402856" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="67851" stop="68305"/>
              <exon start="69047" stop="69107"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E400960" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="67852" stop="68080"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E261763" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="67866" stop="68305"/>
              <exon start="69047" stop="69107"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E220993" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="67878" stop="68305"/>
              <exon start="69047" stop="69107"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E235196" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="67880" stop="68305"/>
              <exon start="69047" stop="69077"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E323451" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="67887" stop="68234"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E720468" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="67905" stop="68305"/>
              <exon start="69047" stop="69069"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E471535" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="67905" stop="68303"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E471532" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="67912" stop="68305"/>
              <exon start="69047" stop="69107"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E234283" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="67925" stop="68305"/>
              <exon start="69047" stop="69171"/>
              <exon start="69407" stop="69519"/>
              <exon start="69631" stop="69753"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E258539" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="67928" stop="68305"/>
              <exon start="69047" stop="69171"/>
              <exon start="69407" stop="69513"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E260604" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="67931" stop="68305"/>
              <exon start="69047" stop="69171"/>
              <exon start="69407" stop="69519"/>
              <exon start="69631" stop="69695"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E456668" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="67931" stop="68305"/>
              <exon start="69047" stop="69171"/>
              <exon start="69407" stop="69519"/>
              <exon start="69631" stop="69650"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E452526" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="67934" stop="68305"/>
              <exon start="69047" stop="69107"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E234524" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="67936" stop="68305"/>
              <exon start="69047" stop="69171"/>
              <exon start="69407" stop="69519"/>
              <exon start="69631" stop="69870"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E708489" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="67937" stop="68305"/>
              <exon start="69047" stop="69171"/>
              <exon start="69407" stop="69519"/>
              <exon start="69631" stop="69971"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E555030" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="67937" stop="68305"/>
              <exon start="69047" stop="69171"/>
              <exon start="69407" stop="69519"/>
              <exon start="69631" stop="69908"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E552235" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="67937" stop="68305"/>
              <exon start="69047" stop="69171"/>
              <exon start="69407" stop="69519"/>
              <exon start="69631" stop="69755"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E553296" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="67979" stop="68305"/>
              <exon start="69047" stop="69171"/>
              <exon start="69407" stop="69519"/>
              <exon start="69631" stop="69675"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E233270" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="67979" stop="68305"/>
              <exon start="69047" stop="69171"/>
              <exon start="69407" stop="69485"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E235775" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="67979" stop="68305"/>
              <exon start="69047" stop="69171"/>
              <exon start="69407" stop="69432"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E240658" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="67979" stop="68305"/>
              <exon start="69047" stop="69149"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E239661" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="67979" stop="68305"/>
              <exon start="69047" stop="69109"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E242830" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="67988" stop="68305"/>
              <exon start="69047" stop="69171"/>
              <exon start="69407" stop="69435"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E289438" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="67991" stop="68305"/>
              <exon start="69047" stop="69171"/>
              <exon start="69407" stop="69519"/>
              <exon start="69631" stop="69664"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E710244" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="68005" stop="68305"/>
              <exon start="69047" stop="69107"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E234038" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="68016" stop="68305"/>
              <exon start="69047" stop="69171"/>
              <exon start="69407" stop="69494"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E228246" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="68016" stop="68305"/>
              <exon start="69047" stop="69113"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E240506" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="68044" stop="68305"/>
              <exon start="69047" stop="69171"/>
              <exon start="69407" stop="69519"/>
              <exon start="69631" stop="69666"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E265006" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="68049" stop="68305"/>
              <exon start="69047" stop="69171"/>
              <exon start="69407" stop="69519"/>
              <exon start="69631" stop="69782"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E311228" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="68089" stop="68305"/>
              <exon start="69047" stop="69171"/>
              <exon start="69407" stop="69519"/>
              <exon start="69631" stop="69843"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E276295" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="68089" stop="68305"/>
              <exon start="69047" stop="69171"/>
              <exon start="69407" stop="69519"/>
              <exon start="69631" stop="69761"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E276289" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="68101" stop="68305"/>
              <exon start="69047" stop="69171"/>
              <exon start="69407" stop="69519"/>
              <exon start="69631" stop="69666"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E336433" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="68103" stop="68305"/>
              <exon start="69047" stop="69168"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E247482" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="68168" stop="68305"/>
              <exon start="69047" stop="69171"/>
              <exon start="69407" stop="69519"/>
              <exon start="69631" stop="69823"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E268988" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="68235" stop="68305"/>
              <exon start="69047" stop="69171"/>
              <exon start="69407" stop="69519"/>
              <exon start="69631" stop="70041"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E353122" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="68235" stop="68305"/>
              <exon start="69047" stop="69171"/>
              <exon start="69407" stop="69519"/>
              <exon start="69631" stop="70028"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E349959" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="68235" stop="68305"/>
              <exon start="69047" stop="69171"/>
              <exon start="69407" stop="69519"/>
              <exon start="69631" stop="69972"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E350172" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="68265" stop="68305"/>
              <exon start="69047" stop="69171"/>
              <exon start="69407" stop="69519"/>
              <exon start="69631" stop="70037"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E214434" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="68274" stop="68305"/>
              <exon start="69047" stop="69171"/>
              <exon start="69407" stop="69519"/>
              <exon start="69631" stop="70038"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E410038" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="68276" stop="68305"/>
              <exon start="69047" stop="69171"/>
              <exon start="69407" stop="69519"/>
              <exon start="69631" stop="69965"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E242912" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="68276" stop="68305"/>
              <exon start="69047" stop="69171"/>
              <exon start="69407" stop="69519"/>
              <exon start="69631" stop="69934"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E243545" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="68276" stop="68305"/>
              <exon start="69047" stop="69171"/>
              <exon start="69407" stop="69519"/>
              <exon start="69631" stop="69932"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E240060" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="68276" stop="68305"/>
              <exon start="69047" stop="69171"/>
              <exon start="69407" stop="69519"/>
              <exon start="69631" stop="69825"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E242655" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="68276" stop="68305"/>
              <exon start="69047" stop="69171"/>
              <exon start="69407" stop="69519"/>
              <exon start="69631" stop="69760"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E242080" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="68276" stop="68305"/>
              <exon start="69047" stop="69171"/>
              <exon start="69407" stop="69519"/>
              <exon start="69631" stop="69724"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E240970" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="68276" stop="68305"/>
              <exon start="69047" stop="69171"/>
              <exon start="69407" stop="69434"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E233512" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="68277" stop="68305"/>
              <exon start="69047" stop="69171"/>
              <exon start="69407" stop="69519"/>
              <exon start="69631" stop="70013"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E353837" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="68277" stop="68305"/>
              <exon start="69047" stop="69171"/>
              <exon start="69407" stop="69519"/>
              <exon start="69631" stop="69731"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E238057" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="69050" stop="69171"/>
              <exon start="69407" stop="69519"/>
              <exon start="69631" stop="70022"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E337036" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="69107" stop="69171"/>
              <exon start="69407" stop="69519"/>
              <exon start="69631" stop="69986"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E269085" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="69131" stop="69171"/>
              <exon start="69407" stop="69519"/>
              <exon start="69631" stop="70001"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E433751" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="69148" stop="69171"/>
              <exon start="69407" stop="69519"/>
              <exon start="69631" stop="70051"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E249185" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="69160" stop="69171"/>
              <exon start="69407" stop="69519"/>
              <exon start="69631" stop="70036"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E297153" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="69420" stop="69519"/>
              <exon start="69631" stop="69973"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E241436" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="69420" stop="69519"/>
              <exon start="69631" stop="69930"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E243444" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="69436" stop="69519"/>
              <exon start="69631" stop="70035"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E232459" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="69437" stop="69519"/>
              <exon start="69631" stop="70001"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E404181" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="69438" stop="69519"/>
              <exon start="69631" stop="70017"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E267323" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="69677" stop="70035"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E232383" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="11" AGS_serial="5" gDNA_strand="+"/>
          <translation>
            <gDNA_template>GAGCTTGAGAAACACATTCCTGATCTCCATGTGTTGATTTCGACCCCTTTTCATCCTGCCTATGTCACGGCTGAAAGGATCAAGAAGGCAAAAAATCTACAACTTCTGCTGACAGCTGGAATTGGATCAGATCATGTTGATCTGAAAGCTGCTGCTGCTGCTGGATTGACAGTAGCAGAGGTCACTGGAAGCAATACTGTCTCAGTTGCGGAAGATGAACTGATGCGAATCTTAATTCTTGTCCGAAATTTCTTACCTGGACATCATCAGGTTATCAATGGGGAGTGGAATGTTGCTGCAATTGCGCACAGAGCTTATGATTTGGAAGGCAAGACTGTTGGAACTGTTGGTGCAGGACGTATTGGCAGACTTTTACTCCAGCGATTGAAGCCATTTAACTGTAATCTACTTTACCATGACCGTCTTAAGATGGATTCTGAGCTAGAGAATCAAATTGGAGCAAAGTTTGAGGAAGATCTCGATAAGATGCTCTCGAAATGTGACATAGTGGTCATCAATACGCCTCTTACAGAGAAAACAAA : AGGAATGTTTGACAAGGAAAGAATTGCAAAGTTGAAGAAGGGAGTTCTAATTGTAAACAATGCTCGAGGAGCAATTATGGACACTCAAGCAGTTGTTGATGCTTGTAACAGCGGTCATATTGCAG : GATACAGTGGAGATGTTTGGTACCCACAACCAGCTCCCAAGGACCATCTATGGCGTTACATGCCAAACCAAGCTATGACTCCTCACATTTCTGGGACTACCATTGATGCACAG : TTGAGGTATGCAGCTGGAACAAAGGATATGTTGGACAGGTACTTCAAGGGTGAGGATTTCCCTGCTGAAAATTACATTGTCAAGGATGGGGAATTGGCACCTCAGTATCGCTAAATTATTTATGTATAGAGTTGTGTCTAGATTTCTGTGTTAAATAAACTGGCAAGCCGTGTCTTCAATAAGCTGATAAAATTGGCTACTTTATGTTCTTCTAGAACTCTAATGCAGTTTTTCTCCGGGTTAGCTGTAACTTTTGTGATGGAAACATATGTCCTCTTCTGTGATGGAGGTCTATGTATGATCCTCCAGTGTCTTTCTTGAGTCTATAACTGAACTTCCTTGCTGTGGTAGTTGTACTGGTGTTCCTGGACATTTTATGTTTTAAAAAAAATTATCTTCTTGTTTGCTAGTATTTGTTGCA</gDNA_template>
            <first_frame> E  L  E  K  H  I  P  D  L  H  V  L  I  S  T  P  F  H  P  A  Y  V  T  A  E  R  I  K  K  A  K  N  L  Q  L  L  L  T  A  G  I  G  S  D  H  V  D  L  K  A  A  A  A  A  G  L  T  V  A  E  V  T  G  S  N  T  V  S  V  A  E  D  E  L  M  R  I  L  I  L  V  R  N  F  L  P  G  H  H  Q  V  I  N  G  E  W  N  V  A  A  I  A  H  R  A  Y  D  L  E  G  K  T  V  G  T  V  G  A  G  R  I  G  R  L  L  L  Q  R  L  K  P  F  N  C  N  L  L  Y  H  D  R  L  K  M  D  S  E  L  E  N  Q  I  G  A  K  F  E  E  D  L  D  K  M  L  S  K  C  D  I  V  V  I  N  T  P  L  T  E  K  T  K :   G  M  F  D  K  E  R  I  A  K  L  K  K  G  V  L  I  V  N  N  A  R  G  A  I  M  D  T  Q  A  V  V  D  A  C  N  S  G  H  I  A   : G  Y  S  G  D  V  W  Y  P  Q  P  A  P  K  D  H  L  W  R  Y  M  P  N  Q  A  M  T  P  H  I  S  G  T  T  I  D  A  Q  :  L  R  Y  A  A  G  T  K  D  M  L  D  R  Y  F  K  G  E  D  F  P  A  E  N  Y  I  V  K  D  G  E  L  A  P  Q  Y  R  *  I  I  Y  V  *  S  C  V  *  I  S  V  L  N  K  L  A  S  R  V  F  N  K  L  I  K  L  A  T  L  C  S  S  R  T  L  M  Q  F  F  S  G  L  A  V  T  F  V  M  E  T  Y  V  L  F  C  D  G  G  L  C  M  I  L  Q  C  L  S  *  V  Y  N  *  T  S  L  L  W  *  L  Y  W  C  S  W  T  F  Y  V  L  K  K  I  I  F  L  F  A  S  I  C  C  </first_frame>
            <second_frame>  S  L  R  N  T  F  L  I  S  M  C  *  F  R  P  L  F  I  L  P  M  S  R  L  K  G  S  R  R  Q  K  I  Y  N  F  C  *  Q  L  E  L  D  Q  I  M  L  I  *  K  L  L  L  L  L  D  *  Q  *  Q  R  S  L  E  A  I  L  S  Q  L  R  K  M  N  *  C  E  S  *  F  L  S  E  I  S  Y  L  D  I  I  R  L  S  M  G  S  G  M  L  L  Q  L  R  T  E  L  M  I  W  K  A  R  L  L  E  L  L  V  Q  D  V  L  A  D  F  Y  S  S  D  *  S  H  L  T  V  I  Y  F  T  M  T  V  L  R  W  I  L  S  *  R  I  K  L  E  Q  S  L  R  K  I  S  I  R  C  S  R  N  V  T  *  W  S  S  I  R  L  L  Q  R  K  Q   : K  E  C  L  T  R  K  E  L  Q  S  *  R  R  E  F  *  L  *  T  M  L  E  E  Q  L  W  T  L  K  Q  L  L  M  L  V  T  A  V  I  L  Q  :  D  T  V  E  M  F  G  T  H  N  Q  L  P  R  T  I  Y  G  V  T  C  Q  T  K  L  *  L  L  T  F  L  G  L  P  L  M  H  S :   *  G  M  Q  L  E  Q  R  I  C  W  T  G  T  S  R  V  R  I  S  L  L  K  I  T  L  S  R  M  G  N  W  H  L  S  I  A  K  L  F  M  Y  R  V  V  S  R  F  L  C  *  I  N  W  Q  A  V  S  S  I  S  *  *  N  W  L  L  Y  V  L  L  E  L  *  C  S  F  S  P  G  *  L  *  L  L  *  W  K  H  M  S  S  S  V  M  E  V  Y  V  *  S  S  S  V  F  L  E  S  I  T  E  L  P  C  C  G  S  C  T  G  V  P  G  H  F  M  F  *  K  K  L  S  S  C  L  L  V  F  V  A </second_frame>
            <third_frame>   A  *  E  T  H  S  *  S  P  C  V  D  F  D  P  F  S  S  C  L  C  H  G  *  K  D  Q  E  G  K  K  S  T  T  S  A  D  S  W  N  W  I  R  S  C  *  S  E  S  C  C  C  C  W  I  D  S  S  R  G  H  W  K  Q  Y  C  L  S  C  G  R  *  T  D  A  N  L  N  S  C  P  K  F  L  T  W  T  S  S  G  Y  Q  W  G  V  E  C  C  C  N  C  A  Q  S  L  *  F  G  R  Q  D  C  W  N  C  W  C  R  T  Y  W  Q  T  F  T  P  A  I  E  A  I  *  L  *  S  T  L  P  *  P  S  *  D  G  F  *  A  R  E  S  N  W  S  K  V  *  G  R  S  R  *  D  A  L  E  M  *  H  S  G  H  Q  Y  A  S  Y  R  E  N  K  :  R  N  V  *  Q  G  K  N  C  K  V  E  E  G  S  S  N  C  K  Q  C  S  R  S  N  Y  G  H  S  S  S  C  *  C  L  *  Q  R  S  Y  C  R :   I  Q  W  R  C  L  V  P  T  T  S  S  Q  G  P  S  M  A  L  H  A  K  P  S  Y  D  S  S  H  F  W  D  Y  H  *  C  T   : V  E  V  C  S  W  N  K  G  Y  V  G  Q  V  L  Q  G  *  G  F  P  C  *  K  L  H  C  Q  G  W  G  I  G  T  S  V  S  L  N  Y  L  C  I  E  L  C  L  D  F  C  V  K  *  T  G  K  P  C  L  Q  *  A  D  K  I  G  Y  F  M  F  F  *  N  S  N  A  V  F  L  R  V  S  C  N  F  C  D  G  N  I  C  P  L  L  *  W  R  S  M  Y  D  P  P  V  S  F  L  S  L  *  L  N  F  L  A  V  V  V  V  L  V  F  L  D  I  L  C  F  K  K  N  Y  L  L  V  C  *  Y  L  L   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02HBa0236E02.1" strand="+"/>
                <serials PGL_serial="11" AGS_serial="5" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="67764" stop="68305"/>
                    <exon start="69047" stop="69171"/>
                    <exon start="69407" stop="69519"/>
                    <exon start="69631" stop="69744"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>891</number_coding_nucleotides>
                  <number_encoded_amino_acids>297</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>ELEKHIPDLHVLISTPFHPAYVTAERIKKAKNLQLLLTAGIGSDHVDLKAAAAAGLTVAEVTGSNTVSVAEDELMRILILVRNFLPGHHQVINGEWNVAAIAHRAYDLEGKTVGTVGAGRIGRLLLQRLKPFNCNLLYHDRLKMDSELENQIGAKFEEDLDKMLSKCDIVVINTPLTEKTKGMFDKERIAKLKKGVLIVNNARGAIMDTQAVVDACNSGHIAGYSGDVWYPQPAPKDHLWRYMPNQAMTPHISGTTIDAQLRYAAGTKDMLDRYFKGEDFPAENYIVKDGELAPQYR*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="6">
          <exon_coordinates>
            <exon e_start="69046" e_stop="69171"/>
            <exon e_start="69407" e_stop="69519"/>
            <exon e_start="69631" e_stop="70039"/>
            <exon e_start="70336" e_stop="70379"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.983" acc_prob="0.964" e_score="1.000"/>
          <exon-intron don_prob="1.000" acc_prob="0.989" e_score="1.000"/>
          <exon-intron don_prob="0.000" acc_prob="0.182" e_score="1.000"/>
          <exon-only e_score="0.477"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="69046" e_stop="69171" e_length="126"/>
          </exon>
          <intron i_serial="1" don_prob="0.983" acc_prob="0.964">
            <gDNA_intron_boundary i_start="69172" i_stop="69406" i_length="235"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="69407" e_stop="69519" e_length="113"/>
          </exon>
          <intron i_serial="2" don_prob="1.000" acc_prob="0.989">
            <gDNA_intron_boundary i_start="69520" i_stop="69630" i_length="111"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="69631" e_stop="70039" e_length="409"/>
          </exon>
          <intron i_serial="3" don_prob="0.000" acc_prob="0.182">
            <gDNA_intron_boundary i_start="70040" i_stop="70335" i_length="296"/>
          </intron>
          <exon e_serial="4" e_score="0.477">
            <gDNA_exon_boundary e_start="70336" e_stop="70379" e_length="44"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="69046" stop="69171"/>
              <exon start="69407" stop="69519"/>
              <exon start="69631" stop="70039"/>
              <exon start="70336" stop="70379"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E410154" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="69050" stop="69171"/>
              <exon start="69407" stop="69519"/>
              <exon start="69631" stop="70022"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E337036" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="69107" stop="69171"/>
              <exon start="69407" stop="69519"/>
              <exon start="69631" stop="69986"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E269085" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="69131" stop="69171"/>
              <exon start="69407" stop="69519"/>
              <exon start="69631" stop="70001"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E433751" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="69160" stop="69171"/>
              <exon start="69407" stop="69519"/>
              <exon start="69631" stop="70036"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E297153" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="69420" stop="69519"/>
              <exon start="69631" stop="69973"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E241436" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="69420" stop="69519"/>
              <exon start="69631" stop="69930"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E243444" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="69436" stop="69519"/>
              <exon start="69631" stop="70035"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E232459" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="69437" stop="69519"/>
              <exon start="69631" stop="70001"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E404181" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="69438" stop="69519"/>
              <exon start="69631" stop="70017"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E267323" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="69677" stop="70035"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E232383" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="11" AGS_serial="6" gDNA_strand="+"/>
          <translation>
            <gDNA_template>GAGGAATGTTTGACAAGGAAAGAATTGCAAAGTTGAAGAAGGGAGTTCTAATTGTAAACAATGCTCGAGGAGCAATTATGGACACTCAAGCAGTTGTTGATGCTTGTAACAGCGGTCATATTGCAG : GATACAGTGGAGATGTTTGGTACCCACAACCAGCTCCCAAGGACCATCTATGGCGTTACATGCCAAACCAAGCTATGACTCCTCACATTTCTGGGACTACCATTGATGCACAG : TTGAGGTATGCAGCTGGAACAAAGGATATGTTGGACAGGTACTTCAAGGGTGAGGATTTCCCTGCTGAAAATTACATTGTCAAGGATGGGGAATTGGCACCTCAGTATCGCTAAATTATTTATGTATAGAGTTGTGTCTAGATTTCTGTGTTAAATAAACTGGCAAGCCGTGTCTTCAATAAGCTGATAAAATTGGCTACTTTATGTTCTTCTAGAACTCTAATGCAGTTTTTCTCCGGGTTAGCTGTAACTTTTGTGATGGAAACATATGTCCTCTTCTGTGATGGAGGTCTATGTATGATCCTCCAGTGTCTTTCTTGAGTCTATAACTGAACTTCCTTGCTGTGGTAGTTGTACTGGTGTTCCTGGACATTTTATGTTTTAAAAAAAATTATCTTCTTGTTTGCTA : ATCTTAAATCTAATTCACACTCCAAAAGCTAGTTCTAGTTCAAA</gDNA_template>
            <first_frame> E  E  C  L  T  R  K  E  L  Q  S  *  R  R  E  F  *  L  *  T  M  L  E  E  Q  L  W  T  L  K  Q  L  L  M  L  V  T  A  V  I  L  Q  :  D  T  V  E  M  F  G  T  H  N  Q  L  P  R  T  I  Y  G  V  T  C  Q  T  K  L  *  L  L  T  F  L  G  L  P  L  M  H  S :   *  G  M  Q  L  E  Q  R  I  C  W  T  G  T  S  R  V  R  I  S  L  L  K  I  T  L  S  R  M  G  N  W  H  L  S  I  A  K  L  F  M  Y  R  V  V  S  R  F  L  C  *  I  N  W  Q  A  V  S  S  I  S  *  *  N  W  L  L  Y  V  L  L  E  L  *  C  S  F  S  P  G  *  L  *  L  L  *  W  K  H  M  S  S  S  V  M  E  V  Y  V  *  S  S  S  V  F  L  E  S  I  T  E  L  P  C  C  G  S  C  T  G  V  P  G  H  F  M  F  *  K  K  L  S  S  C  L  L  :  I  L  N  L  I  H  T  P  K  A  S  S  S  S   </first_frame>
            <second_frame>  R  N  V  *  Q  G  K  N  C  K  V  E  E  G  S  S  N  C  K  Q  C  S  R  S  N  Y  G  H  S  S  S  C  *  C  L  *  Q  R  S  Y  C  R :   I  Q  W  R  C  L  V  P  T  T  S  S  Q  G  P  S  M  A  L  H  A  K  P  S  Y  D  S  S  H  F  W  D  Y  H  *  C  T   : V  E  V  C  S  W  N  K  G  Y  V  G  Q  V  L  Q  G  *  G  F  P  C  *  K  L  H  C  Q  G  W  G  I  G  T  S  V  S  L  N  Y  L  C  I  E  L  C  L  D  F  C  V  K  *  T  G  K  P  C  L  Q  *  A  D  K  I  G  Y  F  M  F  F  *  N  S  N  A  V  F  L  R  V  S  C  N  F  C  D  G  N  I  C  P  L  L  *  W  R  S  M  Y  D  P  P  V  S  F  L  S  L  *  L  N  F  L  A  V  V  V  V  L  V  F  L  D  I  L  C  F  K  K  N  Y  L  L  V  C  * :   S  *  I  *  F  T  L  Q  K  L  V  L  V  Q  </second_frame>
            <third_frame>   G  M  F  D  K  E  R  I  A  K  L  K  K  G  V  L  I  V  N  N  A  R  G  A  I  M  D  T  Q  A  V  V  D  A  C  N  S  G  H  I  A   : G  Y  S  G  D  V  W  Y  P  Q  P  A  P  K  D  H  L  W  R  Y  M  P  N  Q  A  M  T  P  H  I  S  G  T  T  I  D  A  Q  :  L  R  Y  A  A  G  T  K  D  M  L  D  R  Y  F  K  G  E  D  F  P  A  E  N  Y  I  V  K  D  G  E  L  A  P  Q  Y  R  *  I  I  Y  V  *  S  C  V  *  I  S  V  L  N  K  L  A  S  R  V  F  N  K  L  I  K  L  A  T  L  C  S  S  R  T  L  M  Q  F  F  S  G  L  A  V  T  F  V  M  E  T  Y  V  L  F  C  D  G  G  L  C  M  I  L  Q  C  L  S  *  V  Y  N  *  T  S  L  L  W  *  L  Y  W  C  S  W  T  F  Y  V  L  K  K  I  I  F  L  F  A   : N  L  K  S  N  S  H  S  K  S  *  F  *  F  K </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02HBa0236E02.1" strand="+"/>
                <serials PGL_serial="11" AGS_serial="6" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="69048" stop="69171"/>
                    <exon start="69407" stop="69519"/>
                    <exon start="69631" stop="69744"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>348</number_coding_nucleotides>
                  <number_encoded_amino_acids>116</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>GMFDKERIAKLKKGVLIVNNARGAIMDTQAVVDACNSGHIAGYSGDVWYPQPAPKDHLWRYMPNQAMTPHISGTTIDAQLRYAAGTKDMLDRYFKGEDFPAENYIVKDGELAPQYR*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="7">
          <exon_coordinates>
            <exon e_start="68879" e_stop="69300"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.998"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.998">
            <gDNA_exon_boundary e_start="68879" e_stop="69300" e_length="422"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="68879" stop="69300"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E239621" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="11" AGS_serial="7" gDNA_strand="+"/>
          <translation>
            <gDNA_template>CAACTTGTGTTGCCAGAATAATATGATTGCCAATGGAGTATTTTTAAGATTCTTGGAGATGTAAGAGTTGTTTCTGTCCATACATCACTCTTCTCATGTCACTAAGGTCATTGATTGTTTCCATGTGCTATATCGCAAATTGCTCACAATTTTAACTATGTGATCCAGAGGAATGTTTGACAAGGAAAGAATTGCAAAGTTGAAGAAGGGAGTTCTAATTGTAAACAATGCTCGAGGAGCAATTATGGACACTCAAGCAGTTGTTGATGCTTGTAACAGCGGTCATATTGCAGGTATTTTAACATAACTTGAACACATCATCCAGAGATGAGCCCTCAGCCTTAATATCAATTGAACACACCATTATATTTTTTTCTTCAATTCTTGCTTGTTTCTTTTCTTCAATATATTTTATCGACATT</gDNA_template>
            <first_frame> Q  L  V  L  P  E  *  Y  D  C  Q  W  S  I  F  K  I  L  G  D  V  R  V  V  S  V  H  T  S  L  F  S  C  H  *  G  H  *  L  F  P  C  A  I  S  Q  I  A  H  N  F  N  Y  V  I  Q  R  N  V  *  Q  G  K  N  C  K  V  E  E  G  S  S  N  C  K  Q  C  S  R  S  N  Y  G  H  S  S  S  C  *  C  L  *  Q  R  S  Y  C  R  Y  F  N  I  T  *  T  H  H  P  E  M  S  P  Q  P  *  Y  Q  L  N  T  P  L  Y  F  F  L  Q  F  L  L  V  S  F  L  Q  Y  I  L  S  T   </first_frame>
            <second_frame>  N  L  C  C  Q  N  N  M  I  A  N  G  V  F  L  R  F  L  E  M  *  E  L  F  L  S  I  H  H  S  S  H  V  T  K  V  I  D  C  F  H  V  L  Y  R  K  L  L  T  I  L  T  M  *  S  R  G  M  F  D  K  E  R  I  A  K  L  K  K  G  V  L  I  V  N  N  A  R  G  A  I  M  D  T  Q  A  V  V  D  A  C  N  S  G  H  I  A  G  I  L  T  *  L  E  H  I  I  Q  R  *  A  L  S  L  N  I  N  *  T  H  H  Y  I  F  F  F  N  S  C  L  F  L  F  F  N  I  F  Y  R  H  </second_frame>
            <third_frame>   T  C  V  A  R  I  I  *  L  P  M  E  Y  F  *  D  S  W  R  C  K  S  C  F  C  P  Y  I  T  L  L  M  S  L  R  S  L  I  V  S  M  C  Y  I  A  N  C  S  Q  F  *  L  C  D  P  E  E  C  L  T  R  K  E  L  Q  S  *  R  R  E  F  *  L  *  T  M  L  E  E  Q  L  W  T  L  K  Q  L  L  M  L  V  T  A  V  I  L  Q  V  F  *  H  N  L  N  T  S  S  R  D  E  P  S  A  L  I  S  I  E  H  T  I  I  F  F  S  S  I  L  A  C  F  F  S  S  I  Y  F  I  D  I </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <none gDNA_id="C02HBa0236E02.1"/>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="8">
          <exon_coordinates>
            <exon e_start="65552" e_stop="66076"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="65552" e_stop="66076" e_length="525"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="65552" stop="66076"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E248671" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="11" AGS_serial="8" gDNA_strand="+"/>
          <translation>
            <gDNA_template>TTCTCTCTGTTTTTAGTAAGTACGAAACCCTTTTCTGTAAATCCAAAAAAAATTCCGATGGCGATGAGGCGTGTAGCTTCTACAGCAGCTCGTGCTATTGCTTCACCTTCATCCTTAGTTTTTACCAGAGAACTTCAGGTAACTAGCCATTTCTCCTCAATAGCCACTTTTTGTTGCTTTTGTTTTATATGACCTAGTTTTCGCCCTTTGATGAATTATCGGAAACCGGCACGGATCAACTCCGATTTTTCGAGAATCAAGTGAGTTGGAGATTGGAACAGAGGAAACTAAAGGAATTTAACCGTGTAAAGGAAAAAATTAAACACACTGTATTTGGTGCTCTACCCCTCGTCTCTTCTTTTTGGCTTTCCCCGTACTCTACACACCAAATGAAATGGCTCGGATATGAAAGGACTAATAACTTTTCAGTTTTCATTACTGCGTCCTTTTTTAAGCTTTCAGTTTTAATTTGCGTGAATATACCTAATTTTTATTAGGGTAGAGTTATATGTTTCAAATTAAATT</gDNA_template>
            <first_frame> F  S  L  F  L  V  S  T  K  P  F  S  V  N  P  K  K  I  P  M  A  M  R  R  V  A  S  T  A  A  R  A  I  A  S  P  S  S  L  V  F  T  R  E  L  Q  V  T  S  H  F  S  S  I  A  T  F  C  C  F  C  F  I  *  P  S  F  R  P  L  M  N  Y  R  K  P  A  R  I  N  S  D  F  S  R  I  K  *  V  G  D  W  N  R  G  N  *  R  N  L  T  V  *  R  K  K  L  N  T  L  Y  L  V  L  Y  P  S  S  L  L  F  G  F  P  R  T  L  H  T  K  *  N  G  S  D  M  K  G  L  I  T  F  Q  F  S  L  L  R  P  F  L  S  F  Q  F  *  F  A  *  I  Y  L  I  F  I  R  V  E  L  Y  V  S  N  *  I </first_frame>
            <second_frame>  S  L  C  F  *  *  V  R  N  P  F  L  *  I  Q  K  K  F  R  W  R  *  G  V  *  L  L  Q  Q  L  V  L  L  L  H  L  H  P  *  F  L  P  E  N  F  R  *  L  A  I  S  P  Q  *  P  L  F  V  A  F  V  L  Y  D  L  V  F  A  L  *  *  I  I  G  N  R  H  G  S  T  P  I  F  R  E  S  S  E  L  E  I  G  T  E  E  T  K  G  I  *  P  C  K  G  K  N  *  T  H  C  I  W  C  S  T  P  R  L  F  F  L  A  F  P  V  L  Y  T  P  N  E  M  A  R  I  *  K  D  *  *  L  F  S  F  H  Y  C  V  L  F  *  A  F  S  F  N  L  R  E  Y  T  *  F  L  L  G  *  S  Y  M  F  Q  I  K   </second_frame>
            <third_frame>   L  S  V  F  S  K  Y  E  T  L  F  C  K  S  K  K  N  S  D  G  D  E  A  C  S  F  Y  S  S  S  C  Y  C  F  T  F  I  L  S  F  Y  Q  R  T  S  G  N  *  P  F  L  L  N  S  H  F  L  L  L  L  F  Y  M  T  *  F  S  P  F  D  E  L  S  E  T  G  T  D  Q  L  R  F  F  E  N  Q  V  S  W  R  L  E  Q  R  K  L  K  E  F  N  R  V  K  E  K  I  K  H  T  V  F  G  A  L  P  L  V  S  S  F  W  L  S  P  Y  S  T  H  Q  M  K  W  L  G  Y  E  R  T  N  N  F  S  V  F  I  T  A  S  F  F  K  L  S  V  L  I  C  V  N  I  P  N  F  Y  *  G  R  V  I  C  F  K  L  N  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02HBa0236E02.1" strand="+"/>
                <serials PGL_serial="11" AGS_serial="8" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="65749" stop="66048"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>297</number_coding_nucleotides>
                  <number_encoded_amino_acids>99</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>FSPFDELSETGTDQLRFFENQVSWRLEQRKLKEFNRVKEKIKHTVFGALPLVSSFWLSPYSTHQMKWLGYERTNNFSVFITASFFKLSVLICVNIPNFY*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="12" PGL_strand="-" PGL_start="73524" PGL_stop="69691"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="73516" e_stop="73423"/>
            <exon e_start="72078" e_stop="71759"/>
            <exon e_start="71681" e_stop="71517"/>
            <exon e_start="71043" e_stop="70407"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.962" acc_prob="0.000" e_score="0.904"/>
          <exon-intron don_prob="0.999" acc_prob="0.925" e_score="0.991"/>
          <exon-intron don_prob="0.981" acc_prob="0.983" e_score="1.000"/>
          <exon-only e_score="0.984"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.904">
            <gDNA_exon_boundary e_start="73516" e_stop="73423" e_length="94"/>
          </exon>
          <intron i_serial="1" don_prob="0.962" acc_prob="0.000">
            <gDNA_intron_boundary i_start="73422" i_stop="72079" i_length="1344"/>
          </intron>
          <exon e_serial="2" e_score="0.991">
            <gDNA_exon_boundary e_start="72078" e_stop="71759" e_length="320"/>
          </exon>
          <intron i_serial="2" don_prob="0.999" acc_prob="0.925">
            <gDNA_intron_boundary i_start="71758" i_stop="71682" i_length="77"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="71681" e_stop="71517" e_length="165"/>
          </exon>
          <intron i_serial="3" don_prob="0.981" acc_prob="0.983">
            <gDNA_intron_boundary i_start="71516" i_stop="71044" i_length="473"/>
          </intron>
          <exon e_serial="4" e_score="0.984">
            <gDNA_exon_boundary e_start="71043" e_stop="70407" e_length="637"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="73516" stop="73423"/>
              <exon start="72078" stop="71759"/>
              <exon start="71681" stop="71595"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E473654" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="73485" stop="73423"/>
              <exon start="72078" stop="71759"/>
              <exon start="71681" stop="71517"/>
              <exon start="71043" stop="70876"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E408797" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="73481" stop="73423"/>
              <exon start="72078" stop="71759"/>
              <exon start="71681" stop="71517"/>
              <exon start="71043" stop="70874"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E406974" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="73481" stop="73423"/>
              <exon start="72078" stop="71759"/>
              <exon start="71681" stop="71527"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E278134" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="73480" stop="73423"/>
              <exon start="72078" stop="71759"/>
              <exon start="71681" stop="71675"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E292656" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="73479" stop="73423"/>
              <exon start="72078" stop="71759"/>
              <exon start="71681" stop="71517"/>
              <exon start="71043" stop="70897"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E323187" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="73478" stop="73423"/>
              <exon start="72078" stop="71759"/>
              <exon start="71681" stop="71517"/>
              <exon start="71043" stop="70857"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E326835" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="73471" stop="73423"/>
              <exon start="72078" stop="71759"/>
              <exon start="71681" stop="71640"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E344756" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="73469" stop="73423"/>
              <exon start="72078" stop="71759"/>
              <exon start="71681" stop="71517"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E278752" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="73466" stop="73423"/>
              <exon start="72078" stop="71759"/>
              <exon start="71681" stop="71585"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E205441" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="73464" stop="73423"/>
              <exon start="72078" stop="71759"/>
              <exon start="71681" stop="71517"/>
              <exon start="71043" stop="70854"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E345335" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="73455" stop="73423"/>
              <exon start="72078" stop="71759"/>
              <exon start="71681" stop="71517"/>
              <exon start="71043" stop="70961"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E206443" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="73455" stop="73423"/>
              <exon start="72078" stop="71759"/>
              <exon start="71681" stop="71517"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E285854" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="73446" stop="73423"/>
              <exon start="72078" stop="71759"/>
              <exon start="71681" stop="71517"/>
              <exon start="71043" stop="70857"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E458982" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="71966" stop="71759"/>
              <exon start="71681" stop="71517"/>
              <exon start="71043" stop="70768"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E370187" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="71966" stop="71759"/>
              <exon start="71681" stop="71517"/>
              <exon start="71043" stop="70821"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E271844" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="71867" stop="71759"/>
              <exon start="71681" stop="71517"/>
              <exon start="71043" stop="70567"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E346807" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="71857" stop="71759"/>
              <exon start="71681" stop="71517"/>
              <exon start="71043" stop="71016"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E296342" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="71552" stop="71517"/>
              <exon start="71043" stop="70407"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E370186" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="71018" stop="70433"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E409951" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="70756" stop="70511"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E202904" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="70679" stop="70455"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E404919" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="70679" stop="70455"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E434100" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="12" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>AAATATCAAAACAAAGATTGAACGTCCACCACATGTAACACTATGGTGGTTGTCTCCTCTCTCCACTCTCCTTCTTCTTCCTCCTCCATCTACT : TCTACTCAATCTCTCCCTCTCTTCGTTACTTTCGACGTTTCTATACATTTCCATCCAGAAGAAATAATTCCAACTCCAATGGCGGTGCGGTCTTGCTCGTCAAGGCTTATATGGATGAGACCACAAATCCAATTTCTAGTTTTGCTAATAAGGTCATCGGTTCACTGCCTGTTTTTGGTCTCATAGCCAGAATTGTCAATGAGGAAGGTGGTGTTGGAGGCGATTTTATTGATTTTGCGGAGTTCAGGAGGCGAGTCGGTAACAAGTGTTCCATTAATGATTCAAGAGCTTTTTATGAATTTCGAGATCGACGTGGCAAG : ACAGGGGATCCTCTGTATGTGCTACTGTGTTGTTGGTTAGCTGCAGTAGGAGCTGGTTTACTCAAATCTGAGGAAATTTTGGAAGGGGTAGCAAGGCTTAGTTTAGCAAATGATATTGAATTTGAAGAACAAAACTTCATCGCAATGATGAATGAAGCAAGGGAG : AAGCGATCAAAGTTGGGAGCTCCAGCACCTACAATCCCCATGGAATTTCGTGCTGAGAAAGCTCTTGAAGCTATACATGTGTGTTGCTATGGAAGGGATCTGATTGATGAAGAAGATGAAAAACTGCTAAGTACCATGCTTAATGCTGTCTTTCCTACAGTCGGGCGGCAAAAGGTAGAAATCATTGTCAAAGAGAAGGCAAAGAGAATGGCAGATGGAACTGAAGAAATCAAATATGAGCCCAAGCAATTATCAAAAGAAGCAGTTCAGATGCAAATGAAAGACCTTGAATTTCTTAAGCAAAACAGTTTGAATCAGTGAGGCATGAAATTTATCATCATTTTTAAAGTAAATTTTAGGTACTGGTGACTAACACCAACAGGAAGATTATCCCACAAACATTCGGTATAGGAAATCACAGCCACATGTCATGAATGACAAATCTTCTTCGCACAATGTCGCCAACTAATTAAAAAACATTGCATGTGTATGCTGCCTGCTCTCTTTCTTTTGTGATCAGTCTGCATTTTCTACTTGCACTTGAAAGATATAGTGGCTCTGATTTGTATTCAAAAATTACCTATTACTATAACTGTAATGTTAATGACGACAGTCTCACGTCGAAAATGAGTAAACT</gDNA_template>
            <first_frame> K  Y  Q  N  K  D  *  T  S  T  T  C  N  T  M  V  V  V  S  S  L  H  S  P  S  S  S  S  S  I  Y   : F  Y  S  I  S  P  S  L  R  Y  F  R  R  F  Y  T  F  P  S  R  R  N  N  S  N  S  N  G  G  A  V  L  L  V  K  A  Y  M  D  E  T  T  N  P  I  S  S  F  A  N  K  V  I  G  S  L  P  V  F  G  L  I  A  R  I  V  N  E  E  G  G  V  G  G  D  F  I  D  F  A  E  F  R  R  R  V  G  N  K  C  S  I  N  D  S  R  A  F  Y  E  F  R  D  R  R  G  K  :  T  G  D  P  L  Y  V  L  L  C  C  W  L  A  A  V  G  A  G  L  L  K  S  E  E  I  L  E  G  V  A  R  L  S  L  A  N  D  I  E  F  E  E  Q  N  F  I  A  M  M  N  E  A  R  E  :  K  R  S  K  L  G  A  P  A  P  T  I  P  M  E  F  R  A  E  K  A  L  E  A  I  H  V  C  C  Y  G  R  D  L  I  D  E  E  D  E  K  L  L  S  T  M  L  N  A  V  F  P  T  V  G  R  Q  K  V  E  I  I  V  K  E  K  A  K  R  M  A  D  G  T  E  E  I  K  Y  E  P  K  Q  L  S  K  E  A  V  Q  M  Q  M  K  D  L  E  F  L  K  Q  N  S  L  N  Q  *  G  M  K  F  I  I  I  F  K  V  N  F  R  Y  W  *  L  T  P  T  G  R  L  S  H  K  H  S  V  *  E  I  T  A  T  C  H  E  *  Q  I  F  F  A  Q  C  R  Q  L  I  K  K  H  C  M  C  M  L  P  A  L  F  L  L  *  S  V  C  I  F  Y  L  H  L  K  D  I  V  A  L  I  C  I  Q  K  L  P  I  T  I  T  V  M  L  M  T  T  V  S  R  R  K  *  V  N  </first_frame>
            <second_frame>  N  I  K  T  K  I  E  R  P  P  H  V  T  L  W  W  L  S  P  L  S  T  L  L  L  L  P  P  P  S  T  :  S  T  Q  S  L  P  L  F  V  T  F  D  V  S  I  H  F  H  P  E  E  I  I  P  T  P  M  A  V  R  S  C  S  S  R  L  I  W  M  R  P  Q  I  Q  F  L  V  L  L  I  R  S  S  V  H  C  L  F  L  V  S  *  P  E  L  S  M  R  K  V  V  L  E  A  I  L  L  I  L  R  S  S  G  G  E  S  V  T  S  V  P  L  M  I  Q  E  L  F  M  N  F  E  I  D  V  A  R :   Q  G  I  L  C  M  C  Y  C  V  V  G  *  L  Q  *  E  L  V  Y  S  N  L  R  K  F  W  K  G  *  Q  G  L  V  *  Q  M  I  L  N  L  K  N  K  T  S  S  Q  *  *  M  K  Q  G  R :   S  D  Q  S  W  E  L  Q  H  L  Q  S  P  W  N  F  V  L  R  K  L  L  K  L  Y  M  C  V  A  M  E  G  I  *  L  M  K  K  M  K  N  C  *  V  P  C  L  M  L  S  F  L  Q  S  G  G  K  R  *  K  S  L  S  K  R  R  Q  R  E  W  Q  M  E  L  K  K  S  N  M  S  P  S  N  Y  Q  K  K  Q  F  R  C  K  *  K  T  L  N  F  L  S  K  T  V  *  I  S  E  A  *  N  L  S  S  F  L  K  *  I  L  G  T  G  D  *  H  Q  Q  E  D  Y  P  T  N  I  R  Y  R  K  S  Q  P  H  V  M  N  D  K  S  S  S  H  N  V  A  N  *  L  K  N  I  A  C  V  C  C  L  L  S  F  F  C  D  Q  S  A  F  S  T  C  T  *  K  I  *  W  L  *  F  V  F  K  N  Y  L  L  L  *  L  *  C  *  *  R  Q  S  H  V  E  N  E  *  T </second_frame>
            <third_frame>   I  S  K  Q  R  L  N  V  H  H  M  *  H  Y  G  G  C  L  L  S  P  L  S  F  F  F  L  L  H  L  L :   L  L  N  L  S  L  S  S  L  L  S  T  F  L  Y  I  S  I  Q  K  K  *  F  Q  L  Q  W  R  C  G  L  A  R  Q  G  L  Y  G  *  D  H  K  S  N  F  *  F  C  *  *  G  H  R  F  T  A  C  F  W  S  H  S  Q  N  C  Q  *  G  R  W  C  W  R  R  F  Y  *  F  C  G  V  Q  E  A  S  R  *  Q  V  F  H  *  *  F  K  S  F  L  *  I  S  R  S  T  W  Q   : D  R  G  S  S  V  C  A  T  V  L  L  V  S  C  S  R  S  W  F  T  Q  I  *  G  N  F  G  R  G  S  K  A  *  F  S  K  *  Y  *  I  *  R  T  K  L  H  R  N  D  E  *  S  K  G   : E  A  I  K  V  G  S  S  S  T  Y  N  P  H  G  I  S  C  *  E  S  S  *  S  Y  T  C  V  L  L  W  K  G  S  D  *  *  R  R  *  K  T  A  K  Y  H  A  *  C  C  L  S  Y  S  R  A  A  K  G  R  N  H  C  Q  R  E  G  K  E  N  G  R  W  N  *  R  N  Q  I  *  A  Q  A  I  I  K  R  S  S  S  D  A  N  E  R  P  *  I  S  *  A  K  Q  F  E  S  V  R  H  E  I  Y  H  H  F  *  S  K  F  *  V  L  V  T  N  T  N  R  K  I  I  P  Q  T  F  G  I  G  N  H  S  H  M  S  *  M  T  N  L  L  R  T  M  S  P  T  N  *  K  T  L  H  V  Y  A  A  C  S  L  S  F  V  I  S  L  H  F  L  L  A  L  E  R  Y  S  G  S  D  L  Y  S  K  I  T  Y  Y  Y  N  C  N  V  N  D  D  S  L  T  S  K  M  S  K   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02HBa0236E02.1" strand="-"/>
                <serials PGL_serial="12" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="73495" stop="73423"/>
                    <exon start="72078" stop="71759"/>
                    <exon start="71681" stop="71517"/>
                    <exon start="71043" stop="70723"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>876</number_coding_nucleotides>
                  <number_encoded_amino_acids>292</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>TSTTCNTMVVVSSLHSPSSSSSIYFYSISPSLRYFRRFYTFPSRRNNSNSNGGAVLLVKAYMDETTNPISSFANKVIGSLPVFGLIARIVNEEGGVGGDFIDFAEFRRRVGNKCSINDSRAFYEFRDRRGKTGDPLYVLLCCWLAAVGAGLLKSEEILEGVARLSLANDIEFEEQNFIAMMNEAREKRSKLGAPAPTIPMEFRAEKALEAIHVCCYGRDLIDEEDEKLLSTMLNAVFPTVGRQKVEIIVKEKAKRMADGTEEIKYEPKQLSKEAVQMQMKDLEFLKQNSLNQ*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="2">
          <exon_coordinates>
            <exon e_start="73516" e_stop="73423"/>
            <exon e_start="72078" e_stop="71759"/>
            <exon e_start="71681" e_stop="71517"/>
            <exon e_start="71043" e_stop="70441"/>
            <exon e_start="70070" e_stop="69691"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.962" acc_prob="0.000" e_score="0.904"/>
          <exon-intron don_prob="0.999" acc_prob="0.925" e_score="0.991"/>
          <exon-intron don_prob="0.981" acc_prob="0.983" e_score="1.000"/>
          <exon-intron don_prob="0.000" acc_prob="0.618" e_score="0.935"/>
          <exon-only e_score="0.939"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.904">
            <gDNA_exon_boundary e_start="73516" e_stop="73423" e_length="94"/>
          </exon>
          <intron i_serial="1" don_prob="0.962" acc_prob="0.000">
            <gDNA_intron_boundary i_start="73422" i_stop="72079" i_length="1344"/>
          </intron>
          <exon e_serial="2" e_score="0.991">
            <gDNA_exon_boundary e_start="72078" e_stop="71759" e_length="320"/>
          </exon>
          <intron i_serial="2" don_prob="0.999" acc_prob="0.925">
            <gDNA_intron_boundary i_start="71758" i_stop="71682" i_length="77"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="71681" e_stop="71517" e_length="165"/>
          </exon>
          <intron i_serial="3" don_prob="0.981" acc_prob="0.983">
            <gDNA_intron_boundary i_start="71516" i_stop="71044" i_length="473"/>
          </intron>
          <exon e_serial="4" e_score="0.935">
            <gDNA_exon_boundary e_start="71043" e_stop="70441" e_length="603"/>
          </exon>
          <intron i_serial="4" don_prob="0.000" acc_prob="0.618">
            <gDNA_intron_boundary i_start="70440" i_stop="70071" i_length="370"/>
          </intron>
          <exon e_serial="5" e_score="0.939">
            <gDNA_exon_boundary e_start="70070" e_stop="69691" e_length="380"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="73516" stop="73423"/>
              <exon start="72078" stop="71759"/>
              <exon start="71681" stop="71595"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E473654" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="73485" stop="73423"/>
              <exon start="72078" stop="71759"/>
              <exon start="71681" stop="71517"/>
              <exon start="71043" stop="70876"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E408797" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="73484" stop="73423"/>
              <exon start="72078" stop="71759"/>
              <exon start="71681" stop="71517"/>
              <exon start="71043" stop="70441"/>
              <exon start="70070" stop="70024"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E624225" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="73481" stop="73423"/>
              <exon start="72078" stop="71759"/>
              <exon start="71681" stop="71517"/>
              <exon start="71043" stop="70874"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E406974" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="73481" stop="73423"/>
              <exon start="72078" stop="71759"/>
              <exon start="71681" stop="71527"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E278134" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="73480" stop="73423"/>
              <exon start="72078" stop="71759"/>
              <exon start="71681" stop="71675"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E292656" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="73479" stop="73423"/>
              <exon start="72078" stop="71759"/>
              <exon start="71681" stop="71517"/>
              <exon start="71043" stop="70897"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E323187" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="73478" stop="73423"/>
              <exon start="72078" stop="71759"/>
              <exon start="71681" stop="71517"/>
              <exon start="71043" stop="70857"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E326835" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="73471" stop="73423"/>
              <exon start="72078" stop="71759"/>
              <exon start="71681" stop="71640"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E344756" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="73469" stop="73423"/>
              <exon start="72078" stop="71759"/>
              <exon start="71681" stop="71517"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E278752" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="73466" stop="73423"/>
              <exon start="72078" stop="71759"/>
              <exon start="71681" stop="71585"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E205441" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="73464" stop="73423"/>
              <exon start="72078" stop="71759"/>
              <exon start="71681" stop="71517"/>
              <exon start="71043" stop="70854"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E345335" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="73455" stop="73423"/>
              <exon start="72078" stop="71759"/>
              <exon start="71681" stop="71517"/>
              <exon start="71043" stop="70961"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E206443" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="73455" stop="73423"/>
              <exon start="72078" stop="71759"/>
              <exon start="71681" stop="71517"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E285854" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="73446" stop="73423"/>
              <exon start="72078" stop="71759"/>
              <exon start="71681" stop="71517"/>
              <exon start="71043" stop="70857"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E458982" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="71966" stop="71759"/>
              <exon start="71681" stop="71517"/>
              <exon start="71043" stop="70768"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E370187" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="71966" stop="71759"/>
              <exon start="71681" stop="71517"/>
              <exon start="71043" stop="70821"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E271844" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="71867" stop="71759"/>
              <exon start="71681" stop="71517"/>
              <exon start="71043" stop="70567"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E346807" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="71857" stop="71759"/>
              <exon start="71681" stop="71517"/>
              <exon start="71043" stop="71016"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E296342" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="70756" stop="70511"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E202904" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="70679" stop="70455"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E404919" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="70679" stop="70455"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E434100" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="70065" stop="69691"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E262133" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="12" AGS_serial="2" gDNA_strand="-"/>
          <translation>
            <gDNA_template>AAATATCAAAACAAAGATTGAACGTCCACCACATGTAACACTATGGTGGTTGTCTCCTCTCTCCACTCTCCTTCTTCTTCCTCCTCCATCTACT : TCTACTCAATCTCTCCCTCTCTTCGTTACTTTCGACGTTTCTATACATTTCCATCCAGAAGAAATAATTCCAACTCCAATGGCGGTGCGGTCTTGCTCGTCAAGGCTTATATGGATGAGACCACAAATCCAATTTCTAGTTTTGCTAATAAGGTCATCGGTTCACTGCCTGTTTTTGGTCTCATAGCCAGAATTGTCAATGAGGAAGGTGGTGTTGGAGGCGATTTTATTGATTTTGCGGAGTTCAGGAGGCGAGTCGGTAACAAGTGTTCCATTAATGATTCAAGAGCTTTTTATGAATTTCGAGATCGACGTGGCAAG : ACAGGGGATCCTCTGTATGTGCTACTGTGTTGTTGGTTAGCTGCAGTAGGAGCTGGTTTACTCAAATCTGAGGAAATTTTGGAAGGGGTAGCAAGGCTTAGTTTAGCAAATGATATTGAATTTGAAGAACAAAACTTCATCGCAATGATGAATGAAGCAAGGGAG : AAGCGATCAAAGTTGGGAGCTCCAGCACCTACAATCCCCATGGAATTTCGTGCTGAGAAAGCTCTTGAAGCTATACATGTGTGTTGCTATGGAAGGGATCTGATTGATGAAGAAGATGAAAAACTGCTAAGTACCATGCTTAATGCTGTCTTTCCTACAGTCGGGCGGCAAAAGGTAGAAATCATTGTCAAAGAGAAGGCAAAGAGAATGGCAGATGGAACTGAAGAAATCAAATATGAGCCCAAGCAATTATCAAAAGAAGCAGTTCAGATGCAAATGAAAGACCTTGAATTTCTTAAGCAAAACAGTTTGAATCAGTGAGGCATGAAATTTATCATCATTTTTAAAGTAAATTTTAGGTACTGGTGACTAACACCAACAGGAAGATTATCCCACAAACATTCGGTATAGGAAATCACAGCCACATGTCATGAATGACAAATCTTCTTCGCACAATGTCGCCAACTAATTAAAAAACATTGCATGTGTATGCTGCCTGCTCTCTTTCTTTTGTGATCAGTCTGCATTTTCTACTTGCACTTGAAAGATATAGTGGCTCTGATTTGTATTCAAAAATTACCTATTACTATAACTGTAATGTTA : AAAAGATTAACCTAGCGACTGCAACAAATACTAGCAAACAAGAAGATAATTTTTTTTAAAACATAAAATGTCCAGGAACACCAGTACAACTACCACAGCAAGGAAGTTCAGTTATAGACTCAAGAAAGACACTGGAGGATCATACATAGACCTCCATCACAGAAGAGGACATATGTTTCCATCACAAAAGTTACAGCTAACCCGGAGAAAAACTGCATTAGAGTTCTAGAAGAACATAAAGTAGCCAATTTTATCAGCTTATTGAAGACACGGCTTGCCAGTTTATTTAACACAGAAATCTAGACACAACTCTATACATAAATAATTTAGCGATACTGAGGTGCCAATTCCCCATCCTTGACAATGTAATTTTCAGCAGG</gDNA_template>
            <first_frame> K  Y  Q  N  K  D  *  T  S  T  T  C  N  T  M  V  V  V  S  S  L  H  S  P  S  S  S  S  S  I  Y   : F  Y  S  I  S  P  S  L  R  Y  F  R  R  F  Y  T  F  P  S  R  R  N  N  S  N  S  N  G  G  A  V  L  L  V  K  A  Y  M  D  E  T  T  N  P  I  S  S  F  A  N  K  V  I  G  S  L  P  V  F  G  L  I  A  R  I  V  N  E  E  G  G  V  G  G  D  F  I  D  F  A  E  F  R  R  R  V  G  N  K  C  S  I  N  D  S  R  A  F  Y  E  F  R  D  R  R  G  K  :  T  G  D  P  L  Y  V  L  L  C  C  W  L  A  A  V  G  A  G  L  L  K  S  E  E  I  L  E  G  V  A  R  L  S  L  A  N  D  I  E  F  E  E  Q  N  F  I  A  M  M  N  E  A  R  E  :  K  R  S  K  L  G  A  P  A  P  T  I  P  M  E  F  R  A  E  K  A  L  E  A  I  H  V  C  C  Y  G  R  D  L  I  D  E  E  D  E  K  L  L  S  T  M  L  N  A  V  F  P  T  V  G  R  Q  K  V  E  I  I  V  K  E  K  A  K  R  M  A  D  G  T  E  E  I  K  Y  E  P  K  Q  L  S  K  E  A  V  Q  M  Q  M  K  D  L  E  F  L  K  Q  N  S  L  N  Q  *  G  M  K  F  I  I  I  F  K  V  N  F  R  Y  W  *  L  T  P  T  G  R  L  S  H  K  H  S  V  *  E  I  T  A  T  C  H  E  *  Q  I  F  F  A  Q  C  R  Q  L  I  K  K  H  C  M  C  M  L  P  A  L  F  L  L  *  S  V  C  I  F  Y  L  H  L  K  D  I  V  A  L  I  C  I  Q  K  L  P  I  T  I  T  V  M  L  :  K  R  L  T  *  R  L  Q  Q  I  L  A  N  K  K  I  I  F  F  K  T  *  N  V  Q  E  H  Q  Y  N  Y  H  S  K  E  V  Q  L  *  T  Q  E  R  H  W  R  I  I  H  R  P  P  S  Q  K  R  T  Y  V  S  I  T  K  V  T  A  N  P  E  K  N  C  I  R  V  L  E  E  H  K  V  A  N  F  I  S  L  L  K  T  R  L  A  S  L  F  N  T  E  I  *  T  Q  L  Y  T  *  I  I  *  R  Y  *  G  A  N  S  P  S  L  T  M  *  F  S  A   </first_frame>
            <second_frame>  N  I  K  T  K  I  E  R  P  P  H  V  T  L  W  W  L  S  P  L  S  T  L  L  L  L  P  P  P  S  T  :  S  T  Q  S  L  P  L  F  V  T  F  D  V  S  I  H  F  H  P  E  E  I  I  P  T  P  M  A  V  R  S  C  S  S  R  L  I  W  M  R  P  Q  I  Q  F  L  V  L  L  I  R  S  S  V  H  C  L  F  L  V  S  *  P  E  L  S  M  R  K  V  V  L  E  A  I  L  L  I  L  R  S  S  G  G  E  S  V  T  S  V  P  L  M  I  Q  E  L  F  M  N  F  E  I  D  V  A  R :   Q  G  I  L  C  M  C  Y  C  V  V  G  *  L  Q  *  E  L  V  Y  S  N  L  R  K  F  W  K  G  *  Q  G  L  V  *  Q  M  I  L  N  L  K  N  K  T  S  S  Q  *  *  M  K  Q  G  R :   S  D  Q  S  W  E  L  Q  H  L  Q  S  P  W  N  F  V  L  R  K  L  L  K  L  Y  M  C  V  A  M  E  G  I  *  L  M  K  K  M  K  N  C  *  V  P  C  L  M  L  S  F  L  Q  S  G  G  K  R  *  K  S  L  S  K  R  R  Q  R  E  W  Q  M  E  L  K  K  S  N  M  S  P  S  N  Y  Q  K  K  Q  F  R  C  K  *  K  T  L  N  F  L  S  K  T  V  *  I  S  E  A  *  N  L  S  S  F  L  K  *  I  L  G  T  G  D  *  H  Q  Q  E  D  Y  P  T  N  I  R  Y  R  K  S  Q  P  H  V  M  N  D  K  S  S  S  H  N  V  A  N  *  L  K  N  I  A  C  V  C  C  L  L  S  F  F  C  D  Q  S  A  F  S  T  C  T  *  K  I  *  W  L  *  F  V  F  K  N  Y  L  L  L  *  L  *  C  * :   K  D  *  P  S  D  C  N  K  Y  *  Q  T  R  R  *  F  F  L  K  H  K  M  S  R  N  T  S  T  T  T  T  A  R  K  F  S  Y  R  L  K  K  D  T  G  G  S  Y  I  D  L  H  H  R  R  G  H  M  F  P  S  Q  K  L  Q  L  T  R  R  K  T  A  L  E  F  *  K  N  I  K  *  P  I  L  S  A  Y  *  R  H  G  L  P  V  Y  L  T  Q  K  S  R  H  N  S  I  H  K  *  F  S  D  T  E  V  P  I  P  H  P  *  Q  C  N  F  Q  Q  </second_frame>
            <third_frame>   I  S  K  Q  R  L  N  V  H  H  M  *  H  Y  G  G  C  L  L  S  P  L  S  F  F  F  L  L  H  L  L :   L  L  N  L  S  L  S  S  L  L  S  T  F  L  Y  I  S  I  Q  K  K  *  F  Q  L  Q  W  R  C  G  L  A  R  Q  G  L  Y  G  *  D  H  K  S  N  F  *  F  C  *  *  G  H  R  F  T  A  C  F  W  S  H  S  Q  N  C  Q  *  G  R  W  C  W  R  R  F  Y  *  F  C  G  V  Q  E  A  S  R  *  Q  V  F  H  *  *  F  K  S  F  L  *  I  S  R  S  T  W  Q   : D  R  G  S  S  V  C  A  T  V  L  L  V  S  C  S  R  S  W  F  T  Q  I  *  G  N  F  G  R  G  S  K  A  *  F  S  K  *  Y  *  I  *  R  T  K  L  H  R  N  D  E  *  S  K  G   : E  A  I  K  V  G  S  S  S  T  Y  N  P  H  G  I  S  C  *  E  S  S  *  S  Y  T  C  V  L  L  W  K  G  S  D  *  *  R  R  *  K  T  A  K  Y  H  A  *  C  C  L  S  Y  S  R  A  A  K  G  R  N  H  C  Q  R  E  G  K  E  N  G  R  W  N  *  R  N  Q  I  *  A  Q  A  I  I  K  R  S  S  S  D  A  N  E  R  P  *  I  S  *  A  K  Q  F  E  S  V  R  H  E  I  Y  H  H  F  *  S  K  F  *  V  L  V  T  N  T  N  R  K  I  I  P  Q  T  F  G  I  G  N  H  S  H  M  S  *  M  T  N  L  L  R  T  M  S  P  T  N  *  K  T  L  H  V  Y  A  A  C  S  L  S  F  V  I  S  L  H  F  L  L  A  L  E  R  Y  S  G  S  D  L  Y  S  K  I  T  Y  Y  Y  N  C  N  V   : K  K  I  N  L  A  T  A  T  N  T  S  K  Q  E  D  N  F  F  *  N  I  K  C  P  G  T  P  V  Q  L  P  Q  Q  G  S  S  V  I  D  S  R  K  T  L  E  D  H  T  *  T  S  I  T  E  E  D  I  C  F  H  H  K  S  Y  S  *  P  G  E  K  L  H  *  S  S  R  R  T  *  S  S  Q  F  Y  Q  L  I  E  D  T  A  C  Q  F  I  *  H  R  N  L  D  T  T  L  Y  I  N  N  L  A  I  L  R  C  Q  F  P  I  L  D  N  V  I  F  S  R </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02HBa0236E02.1" strand="-"/>
                <serials PGL_serial="12" AGS_serial="2" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="73495" stop="73423"/>
                    <exon start="72078" stop="71759"/>
                    <exon start="71681" stop="71517"/>
                    <exon start="71043" stop="70723"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>876</number_coding_nucleotides>
                  <number_encoded_amino_acids>292</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>TSTTCNTMVVVSSLHSPSSSSSIYFYSISPSLRYFRRFYTFPSRRNNSNSNGGAVLLVKAYMDETTNPISSFANKVIGSLPVFGLIARIVNEEGGVGGDFIDFAEFRRRVGNKCSINDSRAFYEFRDRRGKTGDPLYVLLCCWLAAVGAGLLKSEEILEGVARLSLANDIEFEEQNFIAMMNEAREKRSKLGAPAPTIPMEFRAEKALEAIHVCCYGRDLIDEEDEKLLSTMLNAVFPTVGRQKVEIIVKEKAKRMADGTEEIKYEPKQLSKEAVQMQMKDLEFLKQNSLNQ*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="3">
          <exon_coordinates>
            <exon e_start="73516" e_stop="73423"/>
            <exon e_start="72078" e_stop="71759"/>
            <exon e_start="71681" e_stop="71517"/>
            <exon e_start="71043" e_stop="70492"/>
            <exon e_start="70292" e_stop="70285"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.962" acc_prob="0.000" e_score="0.904"/>
          <exon-intron don_prob="0.999" acc_prob="0.925" e_score="0.991"/>
          <exon-intron don_prob="0.981" acc_prob="0.983" e_score="1.000"/>
          <exon-intron don_prob="0.000" acc_prob="0.875" e_score="0.996"/>
          <exon-only e_score="0.875"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.904">
            <gDNA_exon_boundary e_start="73516" e_stop="73423" e_length="94"/>
          </exon>
          <intron i_serial="1" don_prob="0.962" acc_prob="0.000">
            <gDNA_intron_boundary i_start="73422" i_stop="72079" i_length="1344"/>
          </intron>
          <exon e_serial="2" e_score="0.991">
            <gDNA_exon_boundary e_start="72078" e_stop="71759" e_length="320"/>
          </exon>
          <intron i_serial="2" don_prob="0.999" acc_prob="0.925">
            <gDNA_intron_boundary i_start="71758" i_stop="71682" i_length="77"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="71681" e_stop="71517" e_length="165"/>
          </exon>
          <intron i_serial="3" don_prob="0.981" acc_prob="0.983">
            <gDNA_intron_boundary i_start="71516" i_stop="71044" i_length="473"/>
          </intron>
          <exon e_serial="4" e_score="0.996">
            <gDNA_exon_boundary e_start="71043" e_stop="70492" e_length="552"/>
          </exon>
          <intron i_serial="4" don_prob="0.000" acc_prob="0.875">
            <gDNA_intron_boundary i_start="70491" i_stop="70293" i_length="199"/>
          </intron>
          <exon e_serial="5" e_score="0.875">
            <gDNA_exon_boundary e_start="70292" e_stop="70285" e_length="8"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="73516" stop="73423"/>
              <exon start="72078" stop="71759"/>
              <exon start="71681" stop="71595"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E473654" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="73485" stop="73423"/>
              <exon start="72078" stop="71759"/>
              <exon start="71681" stop="71517"/>
              <exon start="71043" stop="70876"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E408797" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="73481" stop="73423"/>
              <exon start="72078" stop="71759"/>
              <exon start="71681" stop="71517"/>
              <exon start="71043" stop="70874"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E406974" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="73481" stop="73423"/>
              <exon start="72078" stop="71759"/>
              <exon start="71681" stop="71527"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E278134" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="73480" stop="73423"/>
              <exon start="72078" stop="71759"/>
              <exon start="71681" stop="71675"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E292656" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="73479" stop="73423"/>
              <exon start="72078" stop="71759"/>
              <exon start="71681" stop="71517"/>
              <exon start="71043" stop="70897"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E323187" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="73478" stop="73423"/>
              <exon start="72078" stop="71759"/>
              <exon start="71681" stop="71517"/>
              <exon start="71043" stop="70857"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E326835" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="73471" stop="73423"/>
              <exon start="72078" stop="71759"/>
              <exon start="71681" stop="71640"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E344756" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="73469" stop="73423"/>
              <exon start="72078" stop="71759"/>
              <exon start="71681" stop="71517"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E278752" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="73466" stop="73423"/>
              <exon start="72078" stop="71759"/>
              <exon start="71681" stop="71585"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E205441" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="73464" stop="73423"/>
              <exon start="72078" stop="71759"/>
              <exon start="71681" stop="71517"/>
              <exon start="71043" stop="70854"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E345335" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="73455" stop="73423"/>
              <exon start="72078" stop="71759"/>
              <exon start="71681" stop="71517"/>
              <exon start="71043" stop="70961"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E206443" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="73455" stop="73423"/>
              <exon start="72078" stop="71759"/>
              <exon start="71681" stop="71517"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E285854" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="73446" stop="73423"/>
              <exon start="72078" stop="71759"/>
              <exon start="71681" stop="71517"/>
              <exon start="71043" stop="70857"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E458982" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="71966" stop="71759"/>
              <exon start="71681" stop="71517"/>
              <exon start="71043" stop="70768"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E370187" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="71966" stop="71759"/>
              <exon start="71681" stop="71517"/>
              <exon start="71043" stop="70821"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E271844" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="71867" stop="71759"/>
              <exon start="71681" stop="71517"/>
              <exon start="71043" stop="70567"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E346807" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="71857" stop="71759"/>
              <exon start="71681" stop="71517"/>
              <exon start="71043" stop="71016"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E296342" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="71015" stop="70492"/>
              <exon start="70292" stop="70285"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E552015" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="70756" stop="70511"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E202904" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="12" AGS_serial="3" gDNA_strand="-"/>
          <translation>
            <gDNA_template>AAATATCAAAACAAAGATTGAACGTCCACCACATGTAACACTATGGTGGTTGTCTCCTCTCTCCACTCTCCTTCTTCTTCCTCCTCCATCTACT : TCTACTCAATCTCTCCCTCTCTTCGTTACTTTCGACGTTTCTATACATTTCCATCCAGAAGAAATAATTCCAACTCCAATGGCGGTGCGGTCTTGCTCGTCAAGGCTTATATGGATGAGACCACAAATCCAATTTCTAGTTTTGCTAATAAGGTCATCGGTTCACTGCCTGTTTTTGGTCTCATAGCCAGAATTGTCAATGAGGAAGGTGGTGTTGGAGGCGATTTTATTGATTTTGCGGAGTTCAGGAGGCGAGTCGGTAACAAGTGTTCCATTAATGATTCAAGAGCTTTTTATGAATTTCGAGATCGACGTGGCAAG : ACAGGGGATCCTCTGTATGTGCTACTGTGTTGTTGGTTAGCTGCAGTAGGAGCTGGTTTACTCAAATCTGAGGAAATTTTGGAAGGGGTAGCAAGGCTTAGTTTAGCAAATGATATTGAATTTGAAGAACAAAACTTCATCGCAATGATGAATGAAGCAAGGGAG : AAGCGATCAAAGTTGGGAGCTCCAGCACCTACAATCCCCATGGAATTTCGTGCTGAGAAAGCTCTTGAAGCTATACATGTGTGTTGCTATGGAAGGGATCTGATTGATGAAGAAGATGAAAAACTGCTAAGTACCATGCTTAATGCTGTCTTTCCTACAGTCGGGCGGCAAAAGGTAGAAATCATTGTCAAAGAGAAGGCAAAGAGAATGGCAGATGGAACTGAAGAAATCAAATATGAGCCCAAGCAATTATCAAAAGAAGCAGTTCAGATGCAAATGAAAGACCTTGAATTTCTTAAGCAAAACAGTTTGAATCAGTGAGGCATGAAATTTATCATCATTTTTAAAGTAAATTTTAGGTACTGGTGACTAACACCAACAGGAAGATTATCCCACAAACATTCGGTATAGGAAATCACAGCCACATGTCATGAATGACAAATCTTCTTCGCACAATGTCGCCAACTAATTAAAAAACATTGCATGTGTATGCTGCCTGCTCTCTTTCTTTTGTGATCAGTCTGCATTTTCTACTTGCACTTGAAAGATATA : ACAAAAAA</gDNA_template>
            <first_frame> K  Y  Q  N  K  D  *  T  S  T  T  C  N  T  M  V  V  V  S  S  L  H  S  P  S  S  S  S  S  I  Y   : F  Y  S  I  S  P  S  L  R  Y  F  R  R  F  Y  T  F  P  S  R  R  N  N  S  N  S  N  G  G  A  V  L  L  V  K  A  Y  M  D  E  T  T  N  P  I  S  S  F  A  N  K  V  I  G  S  L  P  V  F  G  L  I  A  R  I  V  N  E  E  G  G  V  G  G  D  F  I  D  F  A  E  F  R  R  R  V  G  N  K  C  S  I  N  D  S  R  A  F  Y  E  F  R  D  R  R  G  K  :  T  G  D  P  L  Y  V  L  L  C  C  W  L  A  A  V  G  A  G  L  L  K  S  E  E  I  L  E  G  V  A  R  L  S  L  A  N  D  I  E  F  E  E  Q  N  F  I  A  M  M  N  E  A  R  E  :  K  R  S  K  L  G  A  P  A  P  T  I  P  M  E  F  R  A  E  K  A  L  E  A  I  H  V  C  C  Y  G  R  D  L  I  D  E  E  D  E  K  L  L  S  T  M  L  N  A  V  F  P  T  V  G  R  Q  K  V  E  I  I  V  K  E  K  A  K  R  M  A  D  G  T  E  E  I  K  Y  E  P  K  Q  L  S  K  E  A  V  Q  M  Q  M  K  D  L  E  F  L  K  Q  N  S  L  N  Q  *  G  M  K  F  I  I  I  F  K  V  N  F  R  Y  W  *  L  T  P  T  G  R  L  S  H  K  H  S  V  *  E  I  T  A  T  C  H  E  *  Q  I  F  F  A  Q  C  R  Q  L  I  K  K  H  C  M  C  M  L  P  A  L  F  L  L  *  S  V  C  I  F  Y  L  H  L  K  D  I  :  T  K   </first_frame>
            <second_frame>  N  I  K  T  K  I  E  R  P  P  H  V  T  L  W  W  L  S  P  L  S  T  L  L  L  L  P  P  P  S  T  :  S  T  Q  S  L  P  L  F  V  T  F  D  V  S  I  H  F  H  P  E  E  I  I  P  T  P  M  A  V  R  S  C  S  S  R  L  I  W  M  R  P  Q  I  Q  F  L  V  L  L  I  R  S  S  V  H  C  L  F  L  V  S  *  P  E  L  S  M  R  K  V  V  L  E  A  I  L  L  I  L  R  S  S  G  G  E  S  V  T  S  V  P  L  M  I  Q  E  L  F  M  N  F  E  I  D  V  A  R :   Q  G  I  L  C  M  C  Y  C  V  V  G  *  L  Q  *  E  L  V  Y  S  N  L  R  K  F  W  K  G  *  Q  G  L  V  *  Q  M  I  L  N  L  K  N  K  T  S  S  Q  *  *  M  K  Q  G  R :   S  D  Q  S  W  E  L  Q  H  L  Q  S  P  W  N  F  V  L  R  K  L  L  K  L  Y  M  C  V  A  M  E  G  I  *  L  M  K  K  M  K  N  C  *  V  P  C  L  M  L  S  F  L  Q  S  G  G  K  R  *  K  S  L  S  K  R  R  Q  R  E  W  Q  M  E  L  K  K  S  N  M  S  P  S  N  Y  Q  K  K  Q  F  R  C  K  *  K  T  L  N  F  L  S  K  T  V  *  I  S  E  A  *  N  L  S  S  F  L  K  *  I  L  G  T  G  D  *  H  Q  Q  E  D  Y  P  T  N  I  R  Y  R  K  S  Q  P  H  V  M  N  D  K  S  S  S  H  N  V  A  N  *  L  K  N  I  A  C  V  C  C  L  L  S  F  F  C  D  Q  S  A  F  S  T  C  T  *  K  I  * :   Q  K  </second_frame>
            <third_frame>   I  S  K  Q  R  L  N  V  H  H  M  *  H  Y  G  G  C  L  L  S  P  L  S  F  F  F  L  L  H  L  L :   L  L  N  L  S  L  S  S  L  L  S  T  F  L  Y  I  S  I  Q  K  K  *  F  Q  L  Q  W  R  C  G  L  A  R  Q  G  L  Y  G  *  D  H  K  S  N  F  *  F  C  *  *  G  H  R  F  T  A  C  F  W  S  H  S  Q  N  C  Q  *  G  R  W  C  W  R  R  F  Y  *  F  C  G  V  Q  E  A  S  R  *  Q  V  F  H  *  *  F  K  S  F  L  *  I  S  R  S  T  W  Q   : D  R  G  S  S  V  C  A  T  V  L  L  V  S  C  S  R  S  W  F  T  Q  I  *  G  N  F  G  R  G  S  K  A  *  F  S  K  *  Y  *  I  *  R  T  K  L  H  R  N  D  E  *  S  K  G   : E  A  I  K  V  G  S  S  S  T  Y  N  P  H  G  I  S  C  *  E  S  S  *  S  Y  T  C  V  L  L  W  K  G  S  D  *  *  R  R  *  K  T  A  K  Y  H  A  *  C  C  L  S  Y  S  R  A  A  K  G  R  N  H  C  Q  R  E  G  K  E  N  G  R  W  N  *  R  N  Q  I  *  A  Q  A  I  I  K  R  S  S  S  D  A  N  E  R  P  *  I  S  *  A  K  Q  F  E  S  V  R  H  E  I  Y  H  H  F  *  S  K  F  *  V  L  V  T  N  T  N  R  K  I  I  P  Q  T  F  G  I  G  N  H  S  H  M  S  *  M  T  N  L  L  R  T  M  S  P  T  N  *  K  T  L  H  V  Y  A  A  C  S  L  S  F  V  I  S  L  H  F  L  L  A  L  E  R  Y   : N  K  K </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02HBa0236E02.1" strand="-"/>
                <serials PGL_serial="12" AGS_serial="3" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="73495" stop="73423"/>
                    <exon start="72078" stop="71759"/>
                    <exon start="71681" stop="71517"/>
                    <exon start="71043" stop="70723"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>876</number_coding_nucleotides>
                  <number_encoded_amino_acids>292</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>TSTTCNTMVVVSSLHSPSSSSSIYFYSISPSLRYFRRFYTFPSRRNNSNSNGGAVLLVKAYMDETTNPISSFANKVIGSLPVFGLIARIVNEEGGVGGDFIDFAEFRRRVGNKCSINDSRAFYEFRDRRGKTGDPLYVLLCCWLAAVGAGLLKSEEILEGVARLSLANDIEFEEQNFIAMMNEAREKRSKLGAPAPTIPMEFRAEKALEAIHVCCYGRDLIDEEDEKLLSTMLNAVFPTVGRQKVEIIVKEKAKRMADGTEEIKYEPKQLSKEAVQMQMKDLEFLKQNSLNQ*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="4">
          <exon_coordinates>
            <exon e_start="72082" e_stop="71759"/>
            <exon e_start="71681" e_stop="71517"/>
            <exon e_start="71043" e_stop="70407"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.999" acc_prob="0.925" e_score="0.985"/>
          <exon-intron don_prob="0.981" acc_prob="0.983" e_score="1.000"/>
          <exon-only e_score="0.984"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.985">
            <gDNA_exon_boundary e_start="72082" e_stop="71759" e_length="324"/>
          </exon>
          <intron i_serial="1" don_prob="0.999" acc_prob="0.925">
            <gDNA_intron_boundary i_start="71758" i_stop="71682" i_length="77"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="71681" e_stop="71517" e_length="165"/>
          </exon>
          <intron i_serial="2" don_prob="0.981" acc_prob="0.983">
            <gDNA_intron_boundary i_start="71516" i_stop="71044" i_length="473"/>
          </intron>
          <exon e_serial="3" e_score="0.984">
            <gDNA_exon_boundary e_start="71043" e_stop="70407" e_length="637"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="72082" stop="71759"/>
              <exon start="71681" stop="71517"/>
              <exon start="71043" stop="70856"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E551165" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="72082" stop="71759"/>
              <exon start="71681" stop="71517"/>
              <exon start="71043" stop="70875"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E688982" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="72082" stop="71759"/>
              <exon start="71681" stop="71532"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E551326" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="72082" stop="71759"/>
              <exon start="71681" stop="71532"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E688683" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="72081" stop="71759"/>
              <exon start="71681" stop="71517"/>
              <exon start="71043" stop="70961"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E253860" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="72081" stop="71759"/>
              <exon start="71681" stop="71578"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E263121" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="71966" stop="71759"/>
              <exon start="71681" stop="71517"/>
              <exon start="71043" stop="70768"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E370187" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="71966" stop="71759"/>
              <exon start="71681" stop="71517"/>
              <exon start="71043" stop="70821"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E271844" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="71867" stop="71759"/>
              <exon start="71681" stop="71517"/>
              <exon start="71043" stop="70567"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E346807" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="71857" stop="71759"/>
              <exon start="71681" stop="71517"/>
              <exon start="71043" stop="71016"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E296342" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="71552" stop="71517"/>
              <exon start="71043" stop="70407"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E370186" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="71018" stop="70433"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E409951" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="70756" stop="70511"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E202904" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="70679" stop="70455"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E404919" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="70679" stop="70455"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E434100" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="12" AGS_serial="4" gDNA_strand="-"/>
          <translation>
            <gDNA_template>CCAGTCTACTCAATCTCTCCCTCTCTTCGTTACTTTCGACGTTTCTATACATTTCCATCCAGAAGAAATAATTCCAACTCCAATGGCGGTGCGGTCTTGCTCGTCAAGGCTTATATGGATGAGACCACAAATCCAATTTCTAGTTTTGCTAATAAGGTCATCGGTTCACTGCCTGTTTTTGGTCTCATAGCCAGAATTGTCAATGAGGAAGGTGGTGTTGGAGGCGATTTTATTGATTTTGCGGAGTTCAGGAGGCGAGTCGGTAACAAGTGTTCCATTAATGATTCAAGAGCTTTTTATGAATTTCGAGATCGACGTGGCAAG : ACAGGGGATCCTCTGTATGTGCTACTGTGTTGTTGGTTAGCTGCAGTAGGAGCTGGTTTACTCAAATCTGAGGAAATTTTGGAAGGGGTAGCAAGGCTTAGTTTAGCAAATGATATTGAATTTGAAGAACAAAACTTCATCGCAATGATGAATGAAGCAAGGGAG : AAGCGATCAAAGTTGGGAGCTCCAGCACCTACAATCCCCATGGAATTTCGTGCTGAGAAAGCTCTTGAAGCTATACATGTGTGTTGCTATGGAAGGGATCTGATTGATGAAGAAGATGAAAAACTGCTAAGTACCATGCTTAATGCTGTCTTTCCTACAGTCGGGCGGCAAAAGGTAGAAATCATTGTCAAAGAGAAGGCAAAGAGAATGGCAGATGGAACTGAAGAAATCAAATATGAGCCCAAGCAATTATCAAAAGAAGCAGTTCAGATGCAAATGAAAGACCTTGAATTTCTTAAGCAAAACAGTTTGAATCAGTGAGGCATGAAATTTATCATCATTTTTAAAGTAAATTTTAGGTACTGGTGACTAACACCAACAGGAAGATTATCCCACAAACATTCGGTATAGGAAATCACAGCCACATGTCATGAATGACAAATCTTCTTCGCACAATGTCGCCAACTAATTAAAAAACATTGCATGTGTATGCTGCCTGCTCTCTTTCTTTTGTGATCAGTCTGCATTTTCTACTTGCACTTGAAAGATATAGTGGCTCTGATTTGTATTCAAAAATTACCTATTACTATAACTGTAATGTTAATGACGACAGTCTCACGTCGAAAATGAGTAAACT</gDNA_template>
            <first_frame> P  V  Y  S  I  S  P  S  L  R  Y  F  R  R  F  Y  T  F  P  S  R  R  N  N  S  N  S  N  G  G  A  V  L  L  V  K  A  Y  M  D  E  T  T  N  P  I  S  S  F  A  N  K  V  I  G  S  L  P  V  F  G  L  I  A  R  I  V  N  E  E  G  G  V  G  G  D  F  I  D  F  A  E  F  R  R  R  V  G  N  K  C  S  I  N  D  S  R  A  F  Y  E  F  R  D  R  R  G  K  :  T  G  D  P  L  Y  V  L  L  C  C  W  L  A  A  V  G  A  G  L  L  K  S  E  E  I  L  E  G  V  A  R  L  S  L  A  N  D  I  E  F  E  E  Q  N  F  I  A  M  M  N  E  A  R  E  :  K  R  S  K  L  G  A  P  A  P  T  I  P  M  E  F  R  A  E  K  A  L  E  A  I  H  V  C  C  Y  G  R  D  L  I  D  E  E  D  E  K  L  L  S  T  M  L  N  A  V  F  P  T  V  G  R  Q  K  V  E  I  I  V  K  E  K  A  K  R  M  A  D  G  T  E  E  I  K  Y  E  P  K  Q  L  S  K  E  A  V  Q  M  Q  M  K  D  L  E  F  L  K  Q  N  S  L  N  Q  *  G  M  K  F  I  I  I  F  K  V  N  F  R  Y  W  *  L  T  P  T  G  R  L  S  H  K  H  S  V  *  E  I  T  A  T  C  H  E  *  Q  I  F  F  A  Q  C  R  Q  L  I  K  K  H  C  M  C  M  L  P  A  L  F  L  L  *  S  V  C  I  F  Y  L  H  L  K  D  I  V  A  L  I  C  I  Q  K  L  P  I  T  I  T  V  M  L  M  T  T  V  S  R  R  K  *  V  N  </first_frame>
            <second_frame>  Q  S  T  Q  S  L  P  L  F  V  T  F  D  V  S  I  H  F  H  P  E  E  I  I  P  T  P  M  A  V  R  S  C  S  S  R  L  I  W  M  R  P  Q  I  Q  F  L  V  L  L  I  R  S  S  V  H  C  L  F  L  V  S  *  P  E  L  S  M  R  K  V  V  L  E  A  I  L  L  I  L  R  S  S  G  G  E  S  V  T  S  V  P  L  M  I  Q  E  L  F  M  N  F  E  I  D  V  A  R :   Q  G  I  L  C  M  C  Y  C  V  V  G  *  L  Q  *  E  L  V  Y  S  N  L  R  K  F  W  K  G  *  Q  G  L  V  *  Q  M  I  L  N  L  K  N  K  T  S  S  Q  *  *  M  K  Q  G  R :   S  D  Q  S  W  E  L  Q  H  L  Q  S  P  W  N  F  V  L  R  K  L  L  K  L  Y  M  C  V  A  M  E  G  I  *  L  M  K  K  M  K  N  C  *  V  P  C  L  M  L  S  F  L  Q  S  G  G  K  R  *  K  S  L  S  K  R  R  Q  R  E  W  Q  M  E  L  K  K  S  N  M  S  P  S  N  Y  Q  K  K  Q  F  R  C  K  *  K  T  L  N  F  L  S  K  T  V  *  I  S  E  A  *  N  L  S  S  F  L  K  *  I  L  G  T  G  D  *  H  Q  Q  E  D  Y  P  T  N  I  R  Y  R  K  S  Q  P  H  V  M  N  D  K  S  S  S  H  N  V  A  N  *  L  K  N  I  A  C  V  C  C  L  L  S  F  F  C  D  Q  S  A  F  S  T  C  T  *  K  I  *  W  L  *  F  V  F  K  N  Y  L  L  L  *  L  *  C  *  *  R  Q  S  H  V  E  N  E  *  T </second_frame>
            <third_frame>   S  L  L  N  L  S  L  S  S  L  L  S  T  F  L  Y  I  S  I  Q  K  K  *  F  Q  L  Q  W  R  C  G  L  A  R  Q  G  L  Y  G  *  D  H  K  S  N  F  *  F  C  *  *  G  H  R  F  T  A  C  F  W  S  H  S  Q  N  C  Q  *  G  R  W  C  W  R  R  F  Y  *  F  C  G  V  Q  E  A  S  R  *  Q  V  F  H  *  *  F  K  S  F  L  *  I  S  R  S  T  W  Q   : D  R  G  S  S  V  C  A  T  V  L  L  V  S  C  S  R  S  W  F  T  Q  I  *  G  N  F  G  R  G  S  K  A  *  F  S  K  *  Y  *  I  *  R  T  K  L  H  R  N  D  E  *  S  K  G   : E  A  I  K  V  G  S  S  S  T  Y  N  P  H  G  I  S  C  *  E  S  S  *  S  Y  T  C  V  L  L  W  K  G  S  D  *  *  R  R  *  K  T  A  K  Y  H  A  *  C  C  L  S  Y  S  R  A  A  K  G  R  N  H  C  Q  R  E  G  K  E  N  G  R  W  N  *  R  N  Q  I  *  A  Q  A  I  I  K  R  S  S  S  D  A  N  E  R  P  *  I  S  *  A  K  Q  F  E  S  V  R  H  E  I  Y  H  H  F  *  S  K  F  *  V  L  V  T  N  T  N  R  K  I  I  P  Q  T  F  G  I  G  N  H  S  H  M  S  *  M  T  N  L  L  R  T  M  S  P  T  N  *  K  T  L  H  V  Y  A  A  C  S  L  S  F  V  I  S  L  H  F  L  L  A  L  E  R  Y  S  G  S  D  L  Y  S  K  I  T  Y  Y  Y  N  C  N  V  N  D  D  S  L  T  S  K  M  S  K   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02HBa0236E02.1" strand="-"/>
                <serials PGL_serial="12" AGS_serial="4" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="72082" stop="71759"/>
                    <exon start="71681" stop="71517"/>
                    <exon start="71043" stop="70723"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>807</number_coding_nucleotides>
                  <number_encoded_amino_acids>269</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>PVYSISPSLRYFRRFYTFPSRRNNSNSNGGAVLLVKAYMDETTNPISSFANKVIGSLPVFGLIARIVNEEGGVGGDFIDFAEFRRRVGNKCSINDSRAFYEFRDRRGKTGDPLYVLLCCWLAAVGAGLLKSEEILEGVARLSLANDIEFEEQNFIAMMNEAREKRSKLGAPAPTIPMEFRAEKALEAIHVCCYGRDLIDEEDEKLLSTMLNAVFPTVGRQKVEIIVKEKAKRMADGTEEIKYEPKQLSKEAVQMQMKDLEFLKQNSLNQ*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="5">
          <exon_coordinates>
            <exon e_start="73524" e_stop="73423"/>
            <exon e_start="72079" e_stop="71759"/>
            <exon e_start="71681" e_stop="71517"/>
            <exon e_start="71043" e_stop="70407"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.962" acc_prob="0.000" e_score="1.000"/>
          <exon-intron don_prob="0.999" acc_prob="0.925" e_score="0.994"/>
          <exon-intron don_prob="0.981" acc_prob="0.983" e_score="1.000"/>
          <exon-only e_score="0.984"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="73524" e_stop="73423" e_length="102"/>
          </exon>
          <intron i_serial="1" don_prob="0.962" acc_prob="0.000">
            <gDNA_intron_boundary i_start="73422" i_stop="72080" i_length="1343"/>
          </intron>
          <exon e_serial="2" e_score="0.994">
            <gDNA_exon_boundary e_start="72079" e_stop="71759" e_length="321"/>
          </exon>
          <intron i_serial="2" don_prob="0.999" acc_prob="0.925">
            <gDNA_intron_boundary i_start="71758" i_stop="71682" i_length="77"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="71681" e_stop="71517" e_length="165"/>
          </exon>
          <intron i_serial="3" don_prob="0.981" acc_prob="0.983">
            <gDNA_intron_boundary i_start="71516" i_stop="71044" i_length="473"/>
          </intron>
          <exon e_serial="4" e_score="0.984">
            <gDNA_exon_boundary e_start="71043" e_stop="70407" e_length="637"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="73524" stop="73423"/>
              <exon start="72079" stop="71903"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E278518" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="73516" stop="73423"/>
              <exon start="72079" stop="71759"/>
              <exon start="71681" stop="71613"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E265567" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="73437" stop="73423"/>
              <exon start="72079" stop="71759"/>
              <exon start="71681" stop="71517"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E268185" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="71966" stop="71759"/>
              <exon start="71681" stop="71517"/>
              <exon start="71043" stop="70768"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E370187" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="71966" stop="71759"/>
              <exon start="71681" stop="71517"/>
              <exon start="71043" stop="70821"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E271844" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="71867" stop="71759"/>
              <exon start="71681" stop="71517"/>
              <exon start="71043" stop="70567"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E346807" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="71857" stop="71759"/>
              <exon start="71681" stop="71517"/>
              <exon start="71043" stop="71016"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E296342" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="71552" stop="71517"/>
              <exon start="71043" stop="70407"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E370186" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="71018" stop="70433"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E409951" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="70756" stop="70511"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E202904" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="70679" stop="70455"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E404919" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="70679" stop="70455"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E434100" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="12" AGS_serial="5" gDNA_strand="-"/>
          <translation>
            <gDNA_template>AAAGGGGCAAATATCAAAACAAAGATTGAACGTCCACCACATGTAACACTATGGTGGTTGTCTCCTCTCTCCACTCTCCTTCTTCTTCCTCCTCCATCTACT : GTCTACTCAATCTCTCCCTCTCTTCGTTACTTTCGACGTTTCTATACATTTCCATCCAGAAGAAATAATTCCAACTCCAATGGCGGTGCGGTCTTGCTCGTCAAGGCTTATATGGATGAGACCACAAATCCAATTTCTAGTTTTGCTAATAAGGTCATCGGTTCACTGCCTGTTTTTGGTCTCATAGCCAGAATTGTCAATGAGGAAGGTGGTGTTGGAGGCGATTTTATTGATTTTGCGGAGTTCAGGAGGCGAGTCGGTAACAAGTGTTCCATTAATGATTCAAGAGCTTTTTATGAATTTCGAGATCGACGTGGCAAG : ACAGGGGATCCTCTGTATGTGCTACTGTGTTGTTGGTTAGCTGCAGTAGGAGCTGGTTTACTCAAATCTGAGGAAATTTTGGAAGGGGTAGCAAGGCTTAGTTTAGCAAATGATATTGAATTTGAAGAACAAAACTTCATCGCAATGATGAATGAAGCAAGGGAG : AAGCGATCAAAGTTGGGAGCTCCAGCACCTACAATCCCCATGGAATTTCGTGCTGAGAAAGCTCTTGAAGCTATACATGTGTGTTGCTATGGAAGGGATCTGATTGATGAAGAAGATGAAAAACTGCTAAGTACCATGCTTAATGCTGTCTTTCCTACAGTCGGGCGGCAAAAGGTAGAAATCATTGTCAAAGAGAAGGCAAAGAGAATGGCAGATGGAACTGAAGAAATCAAATATGAGCCCAAGCAATTATCAAAAGAAGCAGTTCAGATGCAAATGAAAGACCTTGAATTTCTTAAGCAAAACAGTTTGAATCAGTGAGGCATGAAATTTATCATCATTTTTAAAGTAAATTTTAGGTACTGGTGACTAACACCAACAGGAAGATTATCCCACAAACATTCGGTATAGGAAATCACAGCCACATGTCATGAATGACAAATCTTCTTCGCACAATGTCGCCAACTAATTAAAAAACATTGCATGTGTATGCTGCCTGCTCTCTTTCTTTTGTGATCAGTCTGCATTTTCTACTTGCACTTGAAAGATATAGTGGCTCTGATTTGTATTCAAAAATTACCTATTACTATAACTGTAATGTTAATGACGACAGTCTCACGTCGAAAATGAGTAAACT</gDNA_template>
            <first_frame> K  G  A  N  I  K  T  K  I  E  R  P  P  H  V  T  L  W  W  L  S  P  L  S  T  L  L  L  L  P  P  P  S  T  :  V  Y  S  I  S  P  S  L  R  Y  F  R  R  F  Y  T  F  P  S  R  R  N  N  S  N  S  N  G  G  A  V  L  L  V  K  A  Y  M  D  E  T  T  N  P  I  S  S  F  A  N  K  V  I  G  S  L  P  V  F  G  L  I  A  R  I  V  N  E  E  G  G  V  G  G  D  F  I  D  F  A  E  F  R  R  R  V  G  N  K  C  S  I  N  D  S  R  A  F  Y  E  F  R  D  R  R  G  K  :  T  G  D  P  L  Y  V  L  L  C  C  W  L  A  A  V  G  A  G  L  L  K  S  E  E  I  L  E  G  V  A  R  L  S  L  A  N  D  I  E  F  E  E  Q  N  F  I  A  M  M  N  E  A  R  E  :  K  R  S  K  L  G  A  P  A  P  T  I  P  M  E  F  R  A  E  K  A  L  E  A  I  H  V  C  C  Y  G  R  D  L  I  D  E  E  D  E  K  L  L  S  T  M  L  N  A  V  F  P  T  V  G  R  Q  K  V  E  I  I  V  K  E  K  A  K  R  M  A  D  G  T  E  E  I  K  Y  E  P  K  Q  L  S  K  E  A  V  Q  M  Q  M  K  D  L  E  F  L  K  Q  N  S  L  N  Q  *  G  M  K  F  I  I  I  F  K  V  N  F  R  Y  W  *  L  T  P  T  G  R  L  S  H  K  H  S  V  *  E  I  T  A  T  C  H  E  *  Q  I  F  F  A  Q  C  R  Q  L  I  K  K  H  C  M  C  M  L  P  A  L  F  L  L  *  S  V  C  I  F  Y  L  H  L  K  D  I  V  A  L  I  C  I  Q  K  L  P  I  T  I  T  V  M  L  M  T  T  V  S  R  R  K  *  V  N  </first_frame>
            <second_frame>  K  G  Q  I  S  K  Q  R  L  N  V  H  H  M  *  H  Y  G  G  C  L  L  S  P  L  S  F  F  F  L  L  H  L  L :   S  T  Q  S  L  P  L  F  V  T  F  D  V  S  I  H  F  H  P  E  E  I  I  P  T  P  M  A  V  R  S  C  S  S  R  L  I  W  M  R  P  Q  I  Q  F  L  V  L  L  I  R  S  S  V  H  C  L  F  L  V  S  *  P  E  L  S  M  R  K  V  V  L  E  A  I  L  L  I  L  R  S  S  G  G  E  S  V  T  S  V  P  L  M  I  Q  E  L  F  M  N  F  E  I  D  V  A  R :   Q  G  I  L  C  M  C  Y  C  V  V  G  *  L  Q  *  E  L  V  Y  S  N  L  R  K  F  W  K  G  *  Q  G  L  V  *  Q  M  I  L  N  L  K  N  K  T  S  S  Q  *  *  M  K  Q  G  R :   S  D  Q  S  W  E  L  Q  H  L  Q  S  P  W  N  F  V  L  R  K  L  L  K  L  Y  M  C  V  A  M  E  G  I  *  L  M  K  K  M  K  N  C  *  V  P  C  L  M  L  S  F  L  Q  S  G  G  K  R  *  K  S  L  S  K  R  R  Q  R  E  W  Q  M  E  L  K  K  S  N  M  S  P  S  N  Y  Q  K  K  Q  F  R  C  K  *  K  T  L  N  F  L  S  K  T  V  *  I  S  E  A  *  N  L  S  S  F  L  K  *  I  L  G  T  G  D  *  H  Q  Q  E  D  Y  P  T  N  I  R  Y  R  K  S  Q  P  H  V  M  N  D  K  S  S  S  H  N  V  A  N  *  L  K  N  I  A  C  V  C  C  L  L  S  F  F  C  D  Q  S  A  F  S  T  C  T  *  K  I  *  W  L  *  F  V  F  K  N  Y  L  L  L  *  L  *  C  *  *  R  Q  S  H  V  E  N  E  *  T </second_frame>
            <third_frame>   R  G  K  Y  Q  N  K  D  *  T  S  T  T  C  N  T  M  V  V  V  S  S  L  H  S  P  S  S  S  S  S  I  Y   : C  L  L  N  L  S  L  S  S  L  L  S  T  F  L  Y  I  S  I  Q  K  K  *  F  Q  L  Q  W  R  C  G  L  A  R  Q  G  L  Y  G  *  D  H  K  S  N  F  *  F  C  *  *  G  H  R  F  T  A  C  F  W  S  H  S  Q  N  C  Q  *  G  R  W  C  W  R  R  F  Y  *  F  C  G  V  Q  E  A  S  R  *  Q  V  F  H  *  *  F  K  S  F  L  *  I  S  R  S  T  W  Q   : D  R  G  S  S  V  C  A  T  V  L  L  V  S  C  S  R  S  W  F  T  Q  I  *  G  N  F  G  R  G  S  K  A  *  F  S  K  *  Y  *  I  *  R  T  K  L  H  R  N  D  E  *  S  K  G   : E  A  I  K  V  G  S  S  S  T  Y  N  P  H  G  I  S  C  *  E  S  S  *  S  Y  T  C  V  L  L  W  K  G  S  D  *  *  R  R  *  K  T  A  K  Y  H  A  *  C  C  L  S  Y  S  R  A  A  K  G  R  N  H  C  Q  R  E  G  K  E  N  G  R  W  N  *  R  N  Q  I  *  A  Q  A  I  I  K  R  S  S  S  D  A  N  E  R  P  *  I  S  *  A  K  Q  F  E  S  V  R  H  E  I  Y  H  H  F  *  S  K  F  *  V  L  V  T  N  T  N  R  K  I  I  P  Q  T  F  G  I  G  N  H  S  H  M  S  *  M  T  N  L  L  R  T  M  S  P  T  N  *  K  T  L  H  V  Y  A  A  C  S  L  S  F  V  I  S  L  H  F  L  L  A  L  E  R  Y  S  G  S  D  L  Y  S  K  I  T  Y  Y  Y  N  C  N  V  N  D  D  S  L  T  S  K  M  S  K   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02HBa0236E02.1" strand="-"/>
                <serials PGL_serial="12" AGS_serial="5" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="73524" stop="73423"/>
                    <exon start="72079" stop="71759"/>
                    <exon start="71681" stop="71517"/>
                    <exon start="71043" stop="70723"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>906</number_coding_nucleotides>
                  <number_encoded_amino_acids>302</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>KGANIKTKIERPPHVTLWWLSPLSTLLLLPPPSTVYSISPSLRYFRRFYTFPSRRNNSNSNGGAVLLVKAYMDETTNPISSFANKVIGSLPVFGLIARIVNEEGGVGGDFIDFAEFRRRVGNKCSINDSRAFYEFRDRRGKTGDPLYVLLCCWLAAVGAGLLKSEEILEGVARLSLANDIEFEEQNFIAMMNEAREKRSKLGAPAPTIPMEFRAEKALEAIHVCCYGRDLIDEEDEKLLSTMLNAVFPTVGRQKVEIIVKEKAKRMADGTEEIKYEPKQLSKEAVQMQMKDLEFLKQNSLNQ*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="13" PGL_strand="+" PGL_start="70488" PGL_stop="70841"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="70488" e_stop="70841"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.910"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.910">
            <gDNA_exon_boundary e_start="70488" e_stop="70841" e_length="354"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="70488" stop="70841"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E619850" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="70492" stop="70756"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E281267" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="13" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>CCACTATATCTTTCAAGTGCAAGTAGAAAATGCAGACTGATCACAAAAGAAAGAGAGCAGGCAGCATACACATGCAATGTTTTTTAATTAGTTGGCGACATTGTGCGAAGAAGATTTGTCATTCATGACATGTGGCTGTGATTTCCTATACCGAATGTTTGTGGGATAATCTTCCTGTTGGTGTTAGTCACCAGTACCTAAAATTTACTTTAAAAATGATGATAAATTTCATGCCTCACTGATTCAAACTGTTTTGCTTAAGAAATTCAAGGTCTTTCATTTGCATCTGAACTGCTTCTTTTGATAATTGCTTGGGCTCATATTTGATTTCTTCAGTTCCATCTGCCATTCTCT</gDNA_template>
            <first_frame> P  L  Y  L  S  S  A  S  R  K  C  R  L  I  T  K  E  R  E  Q  A  A  Y  T  C  N  V  F  *  L  V  G  D  I  V  R  R  R  F  V  I  H  D  M  W  L  *  F  P  I  P  N  V  C  G  I  I  F  L  L  V  L  V  T  S  T  *  N  L  L  *  K  *  *  *  I  S  C  L  T  D  S  N  C  F  A  *  E  I  Q  G  L  S  F  A  S  E  L  L  L  L  I  I  A  W  A  H  I  *  F  L  Q  F  H  L  P  F  S </first_frame>
            <second_frame>  H  Y  I  F  Q  V  Q  V  E  N  A  D  *  S  Q  K  K  E  S  R  Q  H  T  H  A  M  F  F  N  *  L  A  T  L  C  E  E  D  L  S  F  M  T  C  G  C  D  F  L  Y  R  M  F  V  G  *  S  S  C  W  C  *  S  P  V  P  K  I  Y  F  K  N  D  D  K  F  H  A  S  L  I  Q  T  V  L  L  K  K  F  K  V  F  H  L  H  L  N  C  F  F  *  *  L  L  G  L  I  F  D  F  F  S  S  I  C  H  S   </second_frame>
            <third_frame>   T  I  S  F  K  C  K  *  K  M  Q  T  D  H  K  R  K  R  A  G  S  I  H  M  Q  C  F  L  I  S  W  R  H  C  A  K  K  I  C  H  S  *  H  V  A  V  I  S  Y  T  E  C  L  W  D  N  L  P  V  G  V  S  H  Q  Y  L  K  F  T  L  K  M  M  I  N  F  M  P  H  *  F  K  L  F  C  L  R  N  S  R  S  F  I  C  I  *  T  A  S  F  D  N  C  L  G  S  Y  L  I  S  S  V  P  S  A  I  L  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <none gDNA_id="C02HBa0236E02.1"/>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="14" PGL_strand="+" PGL_start="71163" PGL_stop="71622"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="71163" e_stop="71622"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.980"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.980">
            <gDNA_exon_boundary e_start="71163" e_stop="71622" e_length="460"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="71163" stop="71622"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E367370" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="14" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>TGCTAAATCTAATGAAGCCCGTAATGGGATAGCTGCAAACATAAATTTACTCGATATACTATTGTAAGCAAGCTTCCCAATAAGAGTTAGGCAGAGCTATGCTGCTTGAATCGTCCAAGAATACTGTCTGCATGTGTCGATACTCTAAAATATATGCAGTTTTGGAGGATTCGAACAACATGGAGGCAGAGTTCTAAGTACCACATCAAAAGAATGAAGCATAAACAGAAGTTGAAGTATGCCTCAAAGACAGTATCCGAGTAAGTATGCTATAAATTTACTGATAAGCATTGAAAGTAAGGTAACATAAATGAAAAGAAGCTAAAAATCGTTGGCAAATGAAATCTTACGAACCTCCCTTGCTTCATTCATCATTGCGATGAAGTTTTGTTCTTCAAATTCAATATCATTTGCTAAACTAAGCCTTGCTACCCCTTCCAAAATTTCCTCAGATTTGAGT</gDNA_template>
            <first_frame> C  *  I  *  *  S  P  *  W  D  S  C  K  H  K  F  T  R  Y  T  I  V  S  K  L  P  N  K  S  *  A  E  L  C  C  L  N  R  P  R  I  L  S  A  C  V  D  T  L  K  Y  M  Q  F  W  R  I  R  T  T  W  R  Q  S  S  K  Y  H  I  K  R  M  K  H  K  Q  K  L  K  Y  A  S  K  T  V  S  E  *  V  C  Y  K  F  T  D  K  H  *  K  *  G  N  I  N  E  K  K  L  K  I  V  G  K  *  N  L  T  N  L  P  C  F  I  H  H  C  D  E  V  L  F  F  K  F  N  I  I  C  *  T  K  P  C  Y  P  F  Q  N  F  L  R  F  E  </first_frame>
            <second_frame>  A  K  S  N  E  A  R  N  G  I  A  A  N  I  N  L  L  D  I  L  L  *  A  S  F  P  I  R  V  R  Q  S  Y  A  A  *  I  V  Q  E  Y  C  L  H  V  S  I  L  *  N  I  C  S  F  G  G  F  E  Q  H  G  G  R  V  L  S  T  T  S  K  E  *  S  I  N  R  S  *  S  M  P  Q  R  Q  Y  P  S  K  Y  A  I  N  L  L  I  S  I  E  S  K  V  T  *  M  K  R  S  *  K  S  L  A  N  E  I  L  R  T  S  L  A  S  F  I  I  A  M  K  F  C  S  S  N  S  I  S  F  A  K  L  S  L  A  T  P  S  K  I  S  S  D  L  S </second_frame>
            <third_frame>   L  N  L  M  K  P  V  M  G  *  L  Q  T  *  I  Y  S  I  Y  Y  C  K  Q  A  S  Q  *  E  L  G  R  A  M  L  L  E  S  S  K  N  T  V  C  M  C  R  Y  S  K  I  Y  A  V  L  E  D  S  N  N  M  E  A  E  F  *  V  P  H  Q  K  N  E  A  *  T  E  V  E  V  C  L  K  D  S  I  R  V  S  M  L  *  I  Y  *  *  A  L  K  V  R  *  H  K  *  K  E  A  K  N  R  W  Q  M  K  S  Y  E  P  P  L  L  H  S  S  L  R  *  S  F  V  L  Q  I  Q  Y  H  L  L  N  *  A  L  L  P  L  P  K  F  P  Q  I  *   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <none gDNA_id="C02HBa0236E02.1"/>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="15" PGL_strand="+" PGL_start="74112" PGL_stop="81514"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="74112" e_stop="74375"/>
            <exon e_start="74467" e_stop="74619"/>
            <exon e_start="75587" e_stop="75624"/>
            <exon e_start="75859" e_stop="75881"/>
            <exon e_start="76747" e_stop="76853"/>
            <exon e_start="76940" e_stop="76991"/>
            <exon e_start="77078" e_stop="77162"/>
            <exon e_start="77856" e_stop="77946"/>
            <exon e_start="78746" e_stop="78784"/>
            <exon e_start="78982" e_stop="79049"/>
            <exon e_start="79143" e_stop="79205"/>
            <exon e_start="79311" e_stop="79366"/>
            <exon e_start="79447" e_stop="79520"/>
            <exon e_start="79653" e_stop="79745"/>
            <exon e_start="79827" e_stop="79928"/>
            <exon e_start="80027" e_stop="80107"/>
            <exon e_start="80178" e_stop="80269"/>
            <exon e_start="80408" e_stop="80423"/>
            <exon e_start="80533" e_stop="80643"/>
            <exon e_start="80736" e_stop="81118"/>
            <exon e_start="81487" e_stop="81514"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.999" acc_prob="1.000" e_score="0.837"/>
          <exon-intron don_prob="0.998" acc_prob="0.915" e_score="1.000"/>
          <exon-intron don_prob="1.000" acc_prob="0.964" e_score="1.000"/>
          <exon-intron don_prob="0.991" acc_prob="0.908" e_score="1.000"/>
          <exon-intron don_prob="0.864" acc_prob="0.996" e_score="1.000"/>
          <exon-intron don_prob="0.983" acc_prob="0.938" e_score="1.000"/>
          <exon-intron don_prob="0.882" acc_prob="1.000" e_score="1.000"/>
          <exon-intron don_prob="1.000" acc_prob="0.768" e_score="1.000"/>
          <exon-intron don_prob="0.822" acc_prob="0.979" e_score="1.000"/>
          <exon-intron don_prob="0.986" acc_prob="0.987" e_score="1.000"/>
          <exon-intron don_prob="0.939" acc_prob="0.976" e_score="1.000"/>
          <exon-intron don_prob="0.982" acc_prob="0.993" e_score="1.000"/>
          <exon-intron don_prob="0.961" acc_prob="0.999" e_score="1.000"/>
          <exon-intron don_prob="0.255" acc_prob="0.978" e_score="1.000"/>
          <exon-intron don_prob="0.873" acc_prob="0.993" e_score="0.980"/>
          <exon-intron don_prob="0.957" acc_prob="0.992" e_score="1.000"/>
          <exon-intron don_prob="0.470" acc_prob="0.434" e_score="1.000"/>
          <exon-intron don_prob="0.990" acc_prob="0.956" e_score="1.000"/>
          <exon-intron don_prob="0.408" acc_prob="0.976" e_score="1.000"/>
          <exon-intron don_prob="0.000" acc_prob="0.000" e_score="1.000"/>
          <exon-only e_score="0.786"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.837">
            <gDNA_exon_boundary e_start="74112" e_stop="74375" e_length="264"/>
          </exon>
          <intron i_serial="1" don_prob="0.999" acc_prob="1.000">
            <gDNA_intron_boundary i_start="74376" i_stop="74466" i_length="91"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="74467" e_stop="74619" e_length="153"/>
          </exon>
          <intron i_serial="2" don_prob="0.998" acc_prob="0.915">
            <gDNA_intron_boundary i_start="74620" i_stop="75586" i_length="967"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="75587" e_stop="75624" e_length="38"/>
          </exon>
          <intron i_serial="3" don_prob="1.000" acc_prob="0.964">
            <gDNA_intron_boundary i_start="75625" i_stop="75858" i_length="234"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="75859" e_stop="75881" e_length="23"/>
          </exon>
          <intron i_serial="4" don_prob="0.991" acc_prob="0.908">
            <gDNA_intron_boundary i_start="75882" i_stop="76746" i_length="865"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="76747" e_stop="76853" e_length="107"/>
          </exon>
          <intron i_serial="5" don_prob="0.864" acc_prob="0.996">
            <gDNA_intron_boundary i_start="76854" i_stop="76939" i_length="86"/>
          </intron>
          <exon e_serial="6" e_score="1.000">
            <gDNA_exon_boundary e_start="76940" e_stop="76991" e_length="52"/>
          </exon>
          <intron i_serial="6" don_prob="0.983" acc_prob="0.938">
            <gDNA_intron_boundary i_start="76992" i_stop="77077" i_length="86"/>
          </intron>
          <exon e_serial="7" e_score="1.000">
            <gDNA_exon_boundary e_start="77078" e_stop="77162" e_length="85"/>
          </exon>
          <intron i_serial="7" don_prob="0.882" acc_prob="1.000">
            <gDNA_intron_boundary i_start="77163" i_stop="77855" i_length="693"/>
          </intron>
          <exon e_serial="8" e_score="1.000">
            <gDNA_exon_boundary e_start="77856" e_stop="77946" e_length="91"/>
          </exon>
          <intron i_serial="8" don_prob="1.000" acc_prob="0.768">
            <gDNA_intron_boundary i_start="77947" i_stop="78745" i_length="799"/>
          </intron>
          <exon e_serial="9" e_score="1.000">
            <gDNA_exon_boundary e_start="78746" e_stop="78784" e_length="39"/>
          </exon>
          <intron i_serial="9" don_prob="0.822" acc_prob="0.979">
            <gDNA_intron_boundary i_start="78785" i_stop="78981" i_length="197"/>
          </intron>
          <exon e_serial="10" e_score="1.000">
            <gDNA_exon_boundary e_start="78982" e_stop="79049" e_length="68"/>
          </exon>
          <intron i_serial="10" don_prob="0.986" acc_prob="0.987">
            <gDNA_intron_boundary i_start="79050" i_stop="79142" i_length="93"/>
          </intron>
          <exon e_serial="11" e_score="1.000">
            <gDNA_exon_boundary e_start="79143" e_stop="79205" e_length="63"/>
          </exon>
          <intron i_serial="11" don_prob="0.939" acc_prob="0.976">
            <gDNA_intron_boundary i_start="79206" i_stop="79310" i_length="105"/>
          </intron>
          <exon e_serial="12" e_score="1.000">
            <gDNA_exon_boundary e_start="79311" e_stop="79366" e_length="56"/>
          </exon>
          <intron i_serial="12" don_prob="0.982" acc_prob="0.993">
            <gDNA_intron_boundary i_start="79367" i_stop="79446" i_length="80"/>
          </intron>
          <exon e_serial="13" e_score="1.000">
            <gDNA_exon_boundary e_start="79447" e_stop="79520" e_length="74"/>
          </exon>
          <intron i_serial="13" don_prob="0.961" acc_prob="0.999">
            <gDNA_intron_boundary i_start="79521" i_stop="79652" i_length="132"/>
          </intron>
          <exon e_serial="14" e_score="1.000">
            <gDNA_exon_boundary e_start="79653" e_stop="79745" e_length="93"/>
          </exon>
          <intron i_serial="14" don_prob="0.255" acc_prob="0.978">
            <gDNA_intron_boundary i_start="79746" i_stop="79826" i_length="81"/>
          </intron>
          <exon e_serial="15" e_score="0.980">
            <gDNA_exon_boundary e_start="79827" e_stop="79928" e_length="102"/>
          </exon>
          <intron i_serial="15" don_prob="0.873" acc_prob="0.993">
            <gDNA_intron_boundary i_start="79929" i_stop="80026" i_length="98"/>
          </intron>
          <exon e_serial="16" e_score="1.000">
            <gDNA_exon_boundary e_start="80027" e_stop="80107" e_length="81"/>
          </exon>
          <intron i_serial="16" don_prob="0.957" acc_prob="0.992">
            <gDNA_intron_boundary i_start="80108" i_stop="80177" i_length="70"/>
          </intron>
          <exon e_serial="17" e_score="1.000">
            <gDNA_exon_boundary e_start="80178" e_stop="80269" e_length="92"/>
          </exon>
          <intron i_serial="17" don_prob="0.470" acc_prob="0.434">
            <gDNA_intron_boundary i_start="80270" i_stop="80407" i_length="138"/>
          </intron>
          <exon e_serial="18" e_score="1.000">
            <gDNA_exon_boundary e_start="80408" e_stop="80423" e_length="16"/>
          </exon>
          <intron i_serial="18" don_prob="0.990" acc_prob="0.956">
            <gDNA_intron_boundary i_start="80424" i_stop="80532" i_length="109"/>
          </intron>
          <exon e_serial="19" e_score="1.000">
            <gDNA_exon_boundary e_start="80533" e_stop="80643" e_length="111"/>
          </exon>
          <intron i_serial="19" don_prob="0.408" acc_prob="0.976">
            <gDNA_intron_boundary i_start="80644" i_stop="80735" i_length="92"/>
          </intron>
          <exon e_serial="20" e_score="1.000">
            <gDNA_exon_boundary e_start="80736" e_stop="81118" e_length="383"/>
          </exon>
          <intron i_serial="20" don_prob="0.000" acc_prob="0.000">
            <gDNA_intron_boundary i_start="81119" i_stop="81486" i_length="368"/>
          </intron>
          <exon e_serial="21" e_score="0.786">
            <gDNA_exon_boundary e_start="81487" e_stop="81514" e_length="28"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="74112" stop="74375"/>
              <exon start="74467" stop="74619"/>
              <exon start="75587" stop="75624"/>
              <exon start="75859" stop="75881"/>
              <exon start="76747" stop="76853"/>
              <exon start="76940" stop="76991"/>
              <exon start="77078" stop="77104"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E414043" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="74164" stop="74375"/>
              <exon start="74467" stop="74619"/>
              <exon start="75587" stop="75624"/>
              <exon start="75859" stop="75881"/>
              <exon start="76747" stop="76853"/>
              <exon start="76940" stop="76991"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E332503" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="74236" stop="74375"/>
              <exon start="74467" stop="74619"/>
              <exon start="75587" stop="75624"/>
              <exon start="75859" stop="75881"/>
              <exon start="76747" stop="76853"/>
              <exon start="76940" stop="76991"/>
              <exon start="77078" stop="77162"/>
              <exon start="77856" stop="77917"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E561780" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="74346" stop="74375"/>
              <exon start="74467" stop="74619"/>
              <exon start="75587" stop="75624"/>
              <exon start="75859" stop="75881"/>
              <exon start="76747" stop="76801"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E338725" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="74515" stop="74619"/>
              <exon start="75587" stop="75624"/>
              <exon start="75859" stop="75881"/>
              <exon start="76747" stop="76853"/>
              <exon start="76940" stop="76991"/>
              <exon start="77078" stop="77162"/>
              <exon start="77856" stop="77946"/>
              <exon start="78746" stop="78784"/>
              <exon start="78982" stop="79049"/>
              <exon start="79143" stop="79205"/>
              <exon start="79311" stop="79366"/>
              <exon start="79447" stop="79512"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E548022" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="79168" stop="79205"/>
              <exon start="79311" stop="79366"/>
              <exon start="79447" stop="79520"/>
              <exon start="79653" stop="79745"/>
              <exon start="79827" stop="79928"/>
              <exon start="80027" stop="80107"/>
              <exon start="80178" stop="80269"/>
              <exon start="80408" stop="80423"/>
              <exon start="80533" stop="80643"/>
              <exon start="80736" stop="80812"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E416937" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="79168" stop="79205"/>
              <exon start="79311" stop="79366"/>
              <exon start="79447" stop="79520"/>
              <exon start="79653" stop="79745"/>
              <exon start="79827" stop="79928"/>
              <exon start="80027" stop="80107"/>
              <exon start="80178" stop="80269"/>
              <exon start="80408" stop="80423"/>
              <exon start="80533" stop="80556"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E439870" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="79499" stop="79520"/>
              <exon start="79653" stop="79745"/>
              <exon start="79827" stop="79928"/>
              <exon start="80027" stop="80075"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E288496" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="79908" stop="79928"/>
              <exon start="80027" stop="80107"/>
              <exon start="80178" stop="80269"/>
              <exon start="80408" stop="80423"/>
              <exon start="80533" stop="80643"/>
              <exon start="80736" stop="81118"/>
              <exon start="81487" stop="81514"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E538230" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="15" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>TGGCGAATGTTCACTGGCGCACTGCCTATCTGGCCCCAATTCCCTAGCGGACGGCCTGTGTCGCTTGCTGCTGCAGCAATAGAACAGAAATTAAAAAAACGAGACATTTGATAATAGTAATTGAAATAAAGAGACTTTGACGGCACTACTATATCACTACTCACATTCTCCTTCCCATTTTCGTGCAAATCAAATATATTCTTCCTCCTACTCTACGCCAGCTGCTCTCCTCTCTCTTTCTCTCTCCTTTCGGCACCTCAAAAG : AGTGGTGAAGTAGAGAGCCCAAGGGTGAGTATGGGAGCTTTTTCAAATGAAGAACTTAGTTTCTCTTCCAATTTCGACTTCGCTTCCTCTCAGGATCTCAGATTCTCTAAGCAAATCCATGACAACGTTCACGGCAACATCTACATCGACCCG : CTCTACTTGAAGTTCATTGACACAGAACAATTTCAAAG : GCTTCGTGATCTTAAACAACTAG : GTGTGACACACATGGTCTATCCAGGAGCAGTGCATTCTAGATTTGAGCATTCCCTTGGAGTGTATTGGCTTGCCAATGAAGCTGTCCATAAGCTTAAAACCCACCAA : GGTATGGAGCTTGGAATTGATCACTTTGATATACAAACAGTGAAACTTGCAG : GTCTTCTACATGATATTGGACATGGACCTTTTAGCCACTTGTTTGAACGCGAGTTTCTTCCTCAAGTTTGCAATGGATTGGACTG : GTCTCATGAGCAAATGTCTGTGGACATGATTGATCACATTGTTGATGAGCGTCGTATTGATATTGATTCTGGAACCATTAAAAGGGTCAAG : GAAATGATACTTGCTAGTTCCAAGTTTACGTTGACAAAA : AGCTCAAGGGAGAAGCAGTTCTTATATGATATTGTGGCTAATGGTCGAAATGGAGTCGATGTTGACAA : GTTTGATTACATTGTCCGAGATAGCCGTGCGTGTGCAGTAGGATGCAATTTTCAATTTGAGAG : GTTGATGGAAACTATGAGAGTATTGGGAGATGAGATATGTTATCGAGCCAAAGATT : ATTTAACCATCCACAAGTTATTTGCCACACGAGCTGATCTACACAGAACTGTTTATACTCACGCTAAAGTGAAG : GCAATAGAGCTTATGATTGTAGATGCACTAGTGAAAGCAAATGATTATCTACACATATCATCACATATAGAGCATCCTTCTCAATACTGGAAG : TTAGATGACACCATTTTAAAAACCATCGAGACTGCTCCAGACCCGGAACTGAAGGAATCTAGGGATTTGATCCTTCGTGTCCGAAGGAGAGATTTGTACCAG : TTCTGTAATGAGTATGCTGTCCCAAGAGACAAAATAGAGCATTTCAAGGATGTCACGGCACATGATATTGTCTGTTCGCAG : AAAAGTAGCAGTGAGACACTTAATGAAGAGGATGTTGCTGTGACCAATGTCAGGATAGATCTGACACGCGGGAGGCATAATCCGCTTGAAAG : TATCCATTTTTTCAAG : GATTATGAAAGTGAGGAGAAGTTCTCTATACCTGATGATCGCATCAGCCACTTGCTGCCATCATCATATCAAGATATGATTGTGAGAGTCTACTCCAAAAAGCCCCACCTG : GTGGAAGCTATTTCTGATGCATTTGAAAATTTCCAGTTAAAGACTTATGGAATAAAAGCACAGGTTCATGCAACACCTGAGAAGAAAAAACGCCGTGTATGATATTTCCCCAGTCATCACTACAAAATCCACAGTAGATATATGTGATTATAGTATATCTCAAGCAACATATTACAGTCCATTTGTACAGAAGTCTTTAAATGACACGTGAAAGGCCTCTCAAGAGTTATACTAGAGTTTTTGTAGAAAGTTGCTACCATTTACTGGATATGATAATATCCTCCGAGTACTCTCAACAATTTCTTGTATCCTAGCATTACTCGAAAAATGGATTTCTTGGTATAACCGACTTCTGAATATTACAGAAGCTGATGCTTTTATAA : ATAAAAAGAAAAAAAAAAACAAATTGAA</gDNA_template>
            <first_frame> W  R  M  F  T  G  A  L  P  I  W  P  Q  F  P  S  G  R  P  V  S  L  A  A  A  A  I  E  Q  K  L  K  K  R  D  I  *  *  *  *  L  K  *  R  D  F  D  G  T  T  I  S  L  L  T  F  S  F  P  F  S  C  K  S  N  I  F  F  L  L  L  Y  A  S  C  S  P  L  S  F  S  L  L  S  A  P  Q  K  :  S  G  E  V  E  S  P  R  V  S  M  G  A  F  S  N  E  E  L  S  F  S  S  N  F  D  F  A  S  S  Q  D  L  R  F  S  K  Q  I  H  D  N  V  H  G  N  I  Y  I  D  P  :  L  Y  L  K  F  I  D  T  E  Q  F  Q  R :   L  R  D  L  K  Q  L   : G  V  T  H  M  V  Y  P  G  A  V  H  S  R  F  E  H  S  L  G  V  Y  W  L  A  N  E  A  V  H  K  L  K  T  H  Q  :  G  M  E  L  G  I  D  H  F  D  I  Q  T  V  K  L  A   : G  L  L  H  D  I  G  H  G  P  F  S  H  L  F  E  R  E  F  L  P  Q  V  C  N  G  L  D  W :   S  H  E  Q  M  S  V  D  M  I  D  H  I  V  D  E  R  R  I  D  I  D  S  G  T  I  K  R  V  K  :  E  M  I  L  A  S  S  K  F  T  L  T  K  :  S  S  R  E  K  Q  F  L  Y  D  I  V  A  N  G  R  N  G  V  D  V  D  K :   F  D  Y  I  V  R  D  S  R  A  C  A  V  G  C  N  F  Q  F  E  R :   L  M  E  T  M  R  V  L  G  D  E  I  C  Y  R  A  K  D   : Y  L  T  I  H  K  L  F  A  T  R  A  D  L  H  R  T  V  Y  T  H  A  K  V  K  :  A  I  E  L  M  I  V  D  A  L  V  K  A  N  D  Y  L  H  I  S  S  H  I  E  H  P  S  Q  Y  W  K  :  L  D  D  T  I  L  K  T  I  E  T  A  P  D  P  E  L  K  E  S  R  D  L  I  L  R  V  R  R  R  D  L  Y  Q  :  F  C  N  E  Y  A  V  P  R  D  K  I  E  H  F  K  D  V  T  A  H  D  I  V  C  S  Q  :  K  S  S  S  E  T  L  N  E  E  D  V  A  V  T  N  V  R  I  D  L  T  R  G  R  H  N  P  L  E  S :   I  H  F  F  K  :  D  Y  E  S  E  E  K  F  S  I  P  D  D  R  I  S  H  L  L  P  S  S  Y  Q  D  M  I  V  R  V  Y  S  K  K  P  H  L  :  V  E  A  I  S  D  A  F  E  N  F  Q  L  K  T  Y  G  I  K  A  Q  V  H  A  T  P  E  K  K  K  R  R  V  *  Y  F  P  S  H  H  Y  K  I  H  S  R  Y  M  *  L  *  Y  I  S  S  N  I  L  Q  S  I  C  T  E  V  F  K  *  H  V  K  G  L  S  R  V  I  L  E  F  L  *  K  V  A  T  I  Y  W  I  *  *  Y  P  P  S  T  L  N  N  F  L  Y  P  S  I  T  R  K  M  D  F  L  V  *  P  T  S  E  Y  Y  R  S  *  C  F  Y  K :   *  K  E  K  K  K  Q  I  E </first_frame>
            <second_frame>  G  E  C  S  L  A  H  C  L  S  G  P  N  S  L  A  D  G  L  C  R  L  L  L  Q  Q  *  N  R  N  *  K  N  E  T  F  D  N  S  N  *  N  K  E  T  L  T  A  L  L  Y  H  Y  S  H  S  P  S  H  F  R  A  N  Q  I  Y  S  S  S  Y  S  T  P  A  A  L  L  S  L  S  L  S  F  R  H  L  K  R :   V  V  K  *  R  A  Q  G  *  V  W  E  L  F  Q  M  K  N  L  V  S  L  P  I  S  T  S  L  P  L  R  I  S  D  S  L  S  K  S  M  T  T  F  T  A  T  S  T  S  T  R :   S  T  *  S  S  L  T  Q  N  N  F  K   : G  F  V  I  L  N  N  *  :  V  *  H  T  W  S  I  Q  E  Q  C  I  L  D  L  S  I  P  L  E  C  I  G  L  P  M  K  L  S  I  S  L  K  P  T  K :   V  W  S  L  E  L  I  T  L  I  Y  K  Q  *  N  L  Q  :  V  F  Y  M  I  L  D  M  D  L  L  A  T  C  L  N  A  S  F  F  L  K  F  A  M  D  W  T   : G  L  M  S  K  C  L  W  T  *  L  I  T  L  L  M  S  V  V  L  I  L  I  L  E  P  L  K  G  S  R :   K  *  Y  L  L  V  P  S  L  R  *  Q  K :   A  Q  G  R  S  S  S  Y  M  I  L  W  L  M  V  E  M  E  S  M  L  T   : S  L  I  T  L  S  E  I  A  V  R  V  Q  *  D  A  I  F  N  L  R   : G  *  W  K  L  *  E  Y  W  E  M  R  Y  V  I  E  P  K  I  :  I  *  P  S  T  S  Y  L  P  H  E  L  I  Y  T  E  L  F  I  L  T  L  K  *  R :   Q  *  S  L  *  L  *  M  H  *  *  K  Q  M  I  I  Y  T  Y  H  H  I  *  S  I  L  L  N  T  G  S :   *  M  T  P  F  *  K  P  S  R  L  L  Q  T  R  N  *  R  N  L  G  I  *  S  F  V  S  E  G  E  I  C  T  S :   S  V  M  S  M  L  S  Q  E  T  K  *  S  I  S  R  M  S  R  H  M  I  L  S  V  R  R :   K  V  A  V  R  H  L  M  K  R  M  L  L  *  P  M  S  G  *  I  *  H  A  G  G  I  I  R  L  K   : V  S  I  F  S  R :   I  M  K  V  R  R  S  S  L  Y  L  M  I  A  S  A  T  C  C  H  H  H  I  K  I  *  L  *  E  S  T  P  K  S  P  T  W :   W  K  L  F  L  M  H  L  K  I  S  S  *  R  L  M  E  *  K  H  R  F  M  Q  H  L  R  R  K  N  A  V  Y  D  I  S  P  V  I  T  T  K  S  T  V  D  I  C  D  Y  S  I  S  Q  A  T  Y  Y  S  P  F  V  Q  K  S  L  N  D  T  *  K  A  S  Q  E  L  Y  *  S  F  C  R  K  L  L  P  F  T  G  Y  D  N  I  L  R  V  L  S  T  I  S  C  I  L  A  L  L  E  K  W  I  S  W  Y  N  R  L  L  N  I  T  E  A  D  A  F  I   : N  K  K  K  K  K  N  K  L   </second_frame>
            <third_frame>   A  N  V  H  W  R  T  A  Y  L  A  P  I  P  *  R  T  A  C  V  A  C  C  C  S  N  R  T  E  I  K  K  T  R  H  L  I  I  V  I  E  I  K  R  L  *  R  H  Y  Y  I  T  T  H  I  L  L  P  I  F  V  Q  I  K  Y  I  L  P  P  T  L  R  Q  L  L  S  S  L  F  L  S  P  F  G  T  S  K   : E  W  *  S  R  E  P  K  G  E  Y  G  S  F  F  K  *  R  T  *  F  L  F  Q  F  R  L  R  F  L  S  G  S  Q  I  L  *  A  N  P  *  Q  R  S  R  Q  H  L  H  R  P   : A  L  L  E  V  H  *  H  R  T  I  S  K  :  A  S  *  S  *  T  T  R :   C  D  T  H  G  L  S  R  S  S  A  F  *  I  *  A  F  P  W  S  V  L  A  C  Q  *  S  C  P  *  A  *  N  P  P   : R  Y  G  A  W  N  *  S  L  *  Y  T  N  S  E  T  C  R :   S  S  T  *  Y  W  T  W  T  F  *  P  L  V  *  T  R  V  S  S  S  S  L  Q  W  I  G  L  :  V  S  *  A  N  V  C  G  H  D  *  S  H  C  *  *  A  S  Y  *  Y  *  F  W  N  H  *  K  G  Q   : G  N  D  T  C  *  F  Q  V  Y  V  D  K   : K  L  K  G  E  A  V  L  I  *  Y  C  G  *  W  S  K  W  S  R  C  *  Q  :  V  *  L  H  C  P  R  *  P  C  V  C  S  R  M  Q  F  S  I  *  E  :  V  D  G  N  Y  E  S  I  G  R  *  D  M  L  S  S  Q  R  L :   F  N  H  P  Q  V  I  C  H  T  S  *  S  T  Q  N  C  L  Y  S  R  *  S  E   : G  N  R  A  Y  D  C  R  C  T  S  E  S  K  *  L  S  T  H  I  I  T  Y  R  A  S  F  S  I  L  E   : V  R  *  H  H  F  K  N  H  R  D  C  S  R  P  G  T  E  G  I  *  G  F  D  P  S  C  P  K  E  R  F  V  P   : V  L  *  *  V  C  C  P  K  R  Q  N  R  A  F  Q  G  C  H  G  T  *  Y  C  L  F  A   : E  K  *  Q  *  D  T  *  *  R  G  C  C  C  D  Q  C  Q  D  R  S  D  T  R  E  A  *  S  A  *  K  :  Y  P  F  F  Q   : G  L  *  K  *  G  E  V  L  Y  T  *  *  S  H  Q  P  L  A  A  I  I  I  S  R  Y  D  C  E  S  L  L  Q  K  A  P  P   : G  G  S  Y  F  *  C  I  *  K  F  P  V  K  D  L  W  N  K  S  T  G  S  C  N  T  *  E  E  K  T  P  C  M  I  F  P  Q  S  S  L  Q  N  P  Q  *  I  Y  V  I  I  V  Y  L  K  Q  H  I  T  V  H  L  Y  R  S  L  *  M  T  R  E  R  P  L  K  S  Y  T  R  V  F  V  E  S  C  Y  H  L  L  D  M  I  I  S  S  E  Y  S  Q  Q  F  L  V  S  *  H  Y  S  K  N  G  F  L  G  I  T  D  F  *  I  L  Q  K  L  M  L  L  *  :  I  K  R  K  K  K  T  N  *  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02HBa0236E02.1" strand="+"/>
                <serials PGL_serial="15" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="74241" stop="74375"/>
                    <exon start="74467" stop="74619"/>
                    <exon start="75587" stop="75624"/>
                    <exon start="75859" stop="75881"/>
                    <exon start="76747" stop="76853"/>
                    <exon start="76940" stop="76991"/>
                    <exon start="77078" stop="77162"/>
                    <exon start="77856" stop="77946"/>
                    <exon start="78746" stop="78784"/>
                    <exon start="78982" stop="79049"/>
                    <exon start="79143" stop="79205"/>
                    <exon start="79311" stop="79366"/>
                    <exon start="79447" stop="79520"/>
                    <exon start="79653" stop="79745"/>
                    <exon start="79827" stop="79928"/>
                    <exon start="80027" stop="80107"/>
                    <exon start="80178" stop="80269"/>
                    <exon start="80408" stop="80423"/>
                    <exon start="80533" stop="80643"/>
                    <exon start="80736" stop="80837"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>1578</number_coding_nucleotides>
                  <number_encoded_amino_acids>526</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>RDFDGTTISLLTFSFPFSCKSNIFFLLLYASCSPLSFSLLSAPQKSGEVESPRVSMGAFSNEELSFSSNFDFASSQDLRFSKQIHDNVHGNIYIDPLYLKFIDTEQFQRLRDLKQLGVTHMVYPGAVHSRFEHSLGVYWLANEAVHKLKTHQGMELGIDHFDIQTVKLAGLLHDIGHGPFSHLFEREFLPQVCNGLDWSHEQMSVDMIDHIVDERRIDIDSGTIKRVKEMILASSKFTLTKSSREKQFLYDIVANGRNGVDVDKFDYIVRDSRACAVGCNFQFERLMETMRVLGDEICYRAKDYLTIHKLFATRADLHRTVYTHAKVKAIELMIVDALVKANDYLHISSHIEHPSQYWKLDDTILKTIETAPDPELKESRDLILRVRRRDLYQFCNEYAVPRDKIEHFKDVTAHDIVCSQKSSSETLNEEDVAVTNVRIDLTRGRHNPLESIHFFKDYESEEKFSIPDDRISHLLPSSYQDMIVRVYSKKPHLVEAISDAFENFQLKTYGIKAQVHATPEKKKRRV*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="2">
          <exon_coordinates>
            <exon e_start="74112" e_stop="74375"/>
            <exon e_start="74467" e_stop="74619"/>
            <exon e_start="75587" e_stop="75624"/>
            <exon e_start="75859" e_stop="75881"/>
            <exon e_start="76747" e_stop="76853"/>
            <exon e_start="76940" e_stop="76991"/>
            <exon e_start="77078" e_stop="77162"/>
            <exon e_start="77856" e_stop="77946"/>
            <exon e_start="78746" e_stop="78784"/>
            <exon e_start="78982" e_stop="79049"/>
            <exon e_start="79143" e_stop="79205"/>
            <exon e_start="79311" e_stop="79366"/>
            <exon e_start="79447" e_stop="79520"/>
            <exon e_start="79653" e_stop="79745"/>
            <exon e_start="79827" e_stop="79928"/>
            <exon e_start="80027" e_stop="80107"/>
            <exon e_start="80178" e_stop="80269"/>
            <exon e_start="80408" e_stop="80423"/>
            <exon e_start="80533" e_stop="80643"/>
            <exon e_start="80736" e_stop="81225"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.999" acc_prob="1.000" e_score="0.837"/>
          <exon-intron don_prob="0.998" acc_prob="0.915" e_score="1.000"/>
          <exon-intron don_prob="1.000" acc_prob="0.964" e_score="1.000"/>
          <exon-intron don_prob="0.991" acc_prob="0.908" e_score="1.000"/>
          <exon-intron don_prob="0.864" acc_prob="0.996" e_score="1.000"/>
          <exon-intron don_prob="0.983" acc_prob="0.938" e_score="1.000"/>
          <exon-intron don_prob="0.882" acc_prob="1.000" e_score="1.000"/>
          <exon-intron don_prob="1.000" acc_prob="0.768" e_score="1.000"/>
          <exon-intron don_prob="0.822" acc_prob="0.979" e_score="1.000"/>
          <exon-intron don_prob="0.986" acc_prob="0.987" e_score="1.000"/>
          <exon-intron don_prob="0.939" acc_prob="0.976" e_score="1.000"/>
          <exon-intron don_prob="0.982" acc_prob="0.993" e_score="1.000"/>
          <exon-intron don_prob="0.961" acc_prob="0.999" e_score="1.000"/>
          <exon-intron don_prob="0.255" acc_prob="0.978" e_score="1.000"/>
          <exon-intron don_prob="0.873" acc_prob="0.993" e_score="0.980"/>
          <exon-intron don_prob="0.957" acc_prob="0.992" e_score="0.988"/>
          <exon-intron don_prob="0.470" acc_prob="0.434" e_score="0.985"/>
          <exon-intron don_prob="0.990" acc_prob="0.956" e_score="1.000"/>
          <exon-intron don_prob="0.408" acc_prob="0.976" e_score="0.991"/>
          <exon-only e_score="0.878"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.837">
            <gDNA_exon_boundary e_start="74112" e_stop="74375" e_length="264"/>
          </exon>
          <intron i_serial="1" don_prob="0.999" acc_prob="1.000">
            <gDNA_intron_boundary i_start="74376" i_stop="74466" i_length="91"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="74467" e_stop="74619" e_length="153"/>
          </exon>
          <intron i_serial="2" don_prob="0.998" acc_prob="0.915">
            <gDNA_intron_boundary i_start="74620" i_stop="75586" i_length="967"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="75587" e_stop="75624" e_length="38"/>
          </exon>
          <intron i_serial="3" don_prob="1.000" acc_prob="0.964">
            <gDNA_intron_boundary i_start="75625" i_stop="75858" i_length="234"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="75859" e_stop="75881" e_length="23"/>
          </exon>
          <intron i_serial="4" don_prob="0.991" acc_prob="0.908">
            <gDNA_intron_boundary i_start="75882" i_stop="76746" i_length="865"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="76747" e_stop="76853" e_length="107"/>
          </exon>
          <intron i_serial="5" don_prob="0.864" acc_prob="0.996">
            <gDNA_intron_boundary i_start="76854" i_stop="76939" i_length="86"/>
          </intron>
          <exon e_serial="6" e_score="1.000">
            <gDNA_exon_boundary e_start="76940" e_stop="76991" e_length="52"/>
          </exon>
          <intron i_serial="6" don_prob="0.983" acc_prob="0.938">
            <gDNA_intron_boundary i_start="76992" i_stop="77077" i_length="86"/>
          </intron>
          <exon e_serial="7" e_score="1.000">
            <gDNA_exon_boundary e_start="77078" e_stop="77162" e_length="85"/>
          </exon>
          <intron i_serial="7" don_prob="0.882" acc_prob="1.000">
            <gDNA_intron_boundary i_start="77163" i_stop="77855" i_length="693"/>
          </intron>
          <exon e_serial="8" e_score="1.000">
            <gDNA_exon_boundary e_start="77856" e_stop="77946" e_length="91"/>
          </exon>
          <intron i_serial="8" don_prob="1.000" acc_prob="0.768">
            <gDNA_intron_boundary i_start="77947" i_stop="78745" i_length="799"/>
          </intron>
          <exon e_serial="9" e_score="1.000">
            <gDNA_exon_boundary e_start="78746" e_stop="78784" e_length="39"/>
          </exon>
          <intron i_serial="9" don_prob="0.822" acc_prob="0.979">
            <gDNA_intron_boundary i_start="78785" i_stop="78981" i_length="197"/>
          </intron>
          <exon e_serial="10" e_score="1.000">
            <gDNA_exon_boundary e_start="78982" e_stop="79049" e_length="68"/>
          </exon>
          <intron i_serial="10" don_prob="0.986" acc_prob="0.987">
            <gDNA_intron_boundary i_start="79050" i_stop="79142" i_length="93"/>
          </intron>
          <exon e_serial="11" e_score="1.000">
            <gDNA_exon_boundary e_start="79143" e_stop="79205" e_length="63"/>
          </exon>
          <intron i_serial="11" don_prob="0.939" acc_prob="0.976">
            <gDNA_intron_boundary i_start="79206" i_stop="79310" i_length="105"/>
          </intron>
          <exon e_serial="12" e_score="1.000">
            <gDNA_exon_boundary e_start="79311" e_stop="79366" e_length="56"/>
          </exon>
          <intron i_serial="12" don_prob="0.982" acc_prob="0.993">
            <gDNA_intron_boundary i_start="79367" i_stop="79446" i_length="80"/>
          </intron>
          <exon e_serial="13" e_score="1.000">
            <gDNA_exon_boundary e_start="79447" e_stop="79520" e_length="74"/>
          </exon>
          <intron i_serial="13" don_prob="0.961" acc_prob="0.999">
            <gDNA_intron_boundary i_start="79521" i_stop="79652" i_length="132"/>
          </intron>
          <exon e_serial="14" e_score="1.000">
            <gDNA_exon_boundary e_start="79653" e_stop="79745" e_length="93"/>
          </exon>
          <intron i_serial="14" don_prob="0.255" acc_prob="0.978">
            <gDNA_intron_boundary i_start="79746" i_stop="79826" i_length="81"/>
          </intron>
          <exon e_serial="15" e_score="0.980">
            <gDNA_exon_boundary e_start="79827" e_stop="79928" e_length="102"/>
          </exon>
          <intron i_serial="15" don_prob="0.873" acc_prob="0.993">
            <gDNA_intron_boundary i_start="79929" i_stop="80026" i_length="98"/>
          </intron>
          <exon e_serial="16" e_score="0.988">
            <gDNA_exon_boundary e_start="80027" e_stop="80107" e_length="81"/>
          </exon>
          <intron i_serial="16" don_prob="0.957" acc_prob="0.992">
            <gDNA_intron_boundary i_start="80108" i_stop="80177" i_length="70"/>
          </intron>
          <exon e_serial="17" e_score="0.985">
            <gDNA_exon_boundary e_start="80178" e_stop="80269" e_length="92"/>
          </exon>
          <intron i_serial="17" don_prob="0.470" acc_prob="0.434">
            <gDNA_intron_boundary i_start="80270" i_stop="80407" i_length="138"/>
          </intron>
          <exon e_serial="18" e_score="1.000">
            <gDNA_exon_boundary e_start="80408" e_stop="80423" e_length="16"/>
          </exon>
          <intron i_serial="18" don_prob="0.990" acc_prob="0.956">
            <gDNA_intron_boundary i_start="80424" i_stop="80532" i_length="109"/>
          </intron>
          <exon e_serial="19" e_score="0.991">
            <gDNA_exon_boundary e_start="80533" e_stop="80643" e_length="111"/>
          </exon>
          <intron i_serial="19" don_prob="0.408" acc_prob="0.976">
            <gDNA_intron_boundary i_start="80644" i_stop="80735" i_length="92"/>
          </intron>
          <exon e_serial="20" e_score="0.878">
            <gDNA_exon_boundary e_start="80736" e_stop="81225" e_length="490"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="74112" stop="74375"/>
              <exon start="74467" stop="74619"/>
              <exon start="75587" stop="75624"/>
              <exon start="75859" stop="75881"/>
              <exon start="76747" stop="76853"/>
              <exon start="76940" stop="76991"/>
              <exon start="77078" stop="77104"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E414043" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="74164" stop="74375"/>
              <exon start="74467" stop="74619"/>
              <exon start="75587" stop="75624"/>
              <exon start="75859" stop="75881"/>
              <exon start="76747" stop="76853"/>
              <exon start="76940" stop="76991"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E332503" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="74236" stop="74375"/>
              <exon start="74467" stop="74619"/>
              <exon start="75587" stop="75624"/>
              <exon start="75859" stop="75881"/>
              <exon start="76747" stop="76853"/>
              <exon start="76940" stop="76991"/>
              <exon start="77078" stop="77162"/>
              <exon start="77856" stop="77917"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E561780" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="74346" stop="74375"/>
              <exon start="74467" stop="74619"/>
              <exon start="75587" stop="75624"/>
              <exon start="75859" stop="75881"/>
              <exon start="76747" stop="76801"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E338725" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="74515" stop="74619"/>
              <exon start="75587" stop="75624"/>
              <exon start="75859" stop="75881"/>
              <exon start="76747" stop="76853"/>
              <exon start="76940" stop="76991"/>
              <exon start="77078" stop="77162"/>
              <exon start="77856" stop="77946"/>
              <exon start="78746" stop="78784"/>
              <exon start="78982" stop="79049"/>
              <exon start="79143" stop="79205"/>
              <exon start="79311" stop="79366"/>
              <exon start="79447" stop="79512"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E548022" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="79168" stop="79205"/>
              <exon start="79311" stop="79366"/>
              <exon start="79447" stop="79520"/>
              <exon start="79653" stop="79745"/>
              <exon start="79827" stop="79928"/>
              <exon start="80027" stop="80107"/>
              <exon start="80178" stop="80269"/>
              <exon start="80408" stop="80423"/>
              <exon start="80533" stop="80643"/>
              <exon start="80736" stop="80812"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E416937" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="79168" stop="79205"/>
              <exon start="79311" stop="79366"/>
              <exon start="79447" stop="79520"/>
              <exon start="79653" stop="79745"/>
              <exon start="79827" stop="79928"/>
              <exon start="80027" stop="80107"/>
              <exon start="80178" stop="80269"/>
              <exon start="80408" stop="80423"/>
              <exon start="80533" stop="80556"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E439870" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="79499" stop="79520"/>
              <exon start="79653" stop="79745"/>
              <exon start="79827" stop="79928"/>
              <exon start="80027" stop="80075"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E288496" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="80203" stop="80269"/>
              <exon start="80408" stop="80423"/>
              <exon start="80533" stop="80643"/>
              <exon start="80736" stop="81225"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E414044" strand="-"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="15" AGS_serial="2" gDNA_strand="+"/>
          <translation>
            <gDNA_template>TGGCGAATGTTCACTGGCGCACTGCCTATCTGGCCCCAATTCCCTAGCGGACGGCCTGTGTCGCTTGCTGCTGCAGCAATAGAACAGAAATTAAAAAAACGAGACATTTGATAATAGTAATTGAAATAAAGAGACTTTGACGGCACTACTATATCACTACTCACATTCTCCTTCCCATTTTCGTGCAAATCAAATATATTCTTCCTCCTACTCTACGCCAGCTGCTCTCCTCTCTCTTTCTCTCTCCTTTCGGCACCTCAAAAG : AGTGGTGAAGTAGAGAGCCCAAGGGTGAGTATGGGAGCTTTTTCAAATGAAGAACTTAGTTTCTCTTCCAATTTCGACTTCGCTTCCTCTCAGGATCTCAGATTCTCTAAGCAAATCCATGACAACGTTCACGGCAACATCTACATCGACCCG : CTCTACTTGAAGTTCATTGACACAGAACAATTTCAAAG : GCTTCGTGATCTTAAACAACTAG : GTGTGACACACATGGTCTATCCAGGAGCAGTGCATTCTAGATTTGAGCATTCCCTTGGAGTGTATTGGCTTGCCAATGAAGCTGTCCATAAGCTTAAAACCCACCAA : GGTATGGAGCTTGGAATTGATCACTTTGATATACAAACAGTGAAACTTGCAG : GTCTTCTACATGATATTGGACATGGACCTTTTAGCCACTTGTTTGAACGCGAGTTTCTTCCTCAAGTTTGCAATGGATTGGACTG : GTCTCATGAGCAAATGTCTGTGGACATGATTGATCACATTGTTGATGAGCGTCGTATTGATATTGATTCTGGAACCATTAAAAGGGTCAAG : GAAATGATACTTGCTAGTTCCAAGTTTACGTTGACAAAA : AGCTCAAGGGAGAAGCAGTTCTTATATGATATTGTGGCTAATGGTCGAAATGGAGTCGATGTTGACAA : GTTTGATTACATTGTCCGAGATAGCCGTGCGTGTGCAGTAGGATGCAATTTTCAATTTGAGAG : GTTGATGGAAACTATGAGAGTATTGGGAGATGAGATATGTTATCGAGCCAAAGATT : ATTTAACCATCCACAAGTTATTTGCCACACGAGCTGATCTACACAGAACTGTTTATACTCACGCTAAAGTGAAG : GCAATAGAGCTTATGATTGTAGATGCACTAGTGAAAGCAAATGATTATCTACACATATCATCACATATAGAGCATCCTTCTCAATACTGGAAG : TTAGATGACACCATTTTAAAAACCATCGAGACTGCTCCAGACCCGGAACTGAAGGAATCTAGGGATTTGATCCTTCGTGTCCGAAGGAGAGATTTGTACCAG : TTCTGTAATGAGTATGCTGTCCCAAGAGACAAAATAGAGCATTTCAAGGATGTCACGGCACATGATATTGTCTGTTCGCAG : AAAAGTAGCAGTGAGACACTTAATGAAGAGGATGTTGCTGTGACCAATGTCAGGATAGATCTGACACGCGGGAGGCATAATCCGCTTGAAAG : TATCCATTTTTTCAAG : GATTATGAAAGTGAGGAGAAGTTCTCTATACCTGATGATCGCATCAGCCACTTGCTGCCATCATCATATCAAGATATGATTGTGAGAGTCTACTCCAAAAAGCCCCACCTG : GTGGAAGCTATTTCTGATGCATTTGAAAATTTCCAGTTAAAGACTTATGGAATAAAAGCACAGGTTCATGCAACACCTGAGAAGAAAAAACGCCGTGTATGATATTTCCCCAGTCATCACTACAAAATCCACAGTAGATATATGTGATTATAGTATATCTCAAGCAACATATTACAGTCCATTTGTACAGAAGTCTTTAAATGACACGTGAAAGGCCTCTCAAGAGTTATACTAGAGTTTTTGTAGAAAGTTGCTACCATTTACTGGATATGATAATATCCTCCGAGTACTCTCAACAATTTCTTGTATCCTAGCATTACTCGAAAAATGGATTTCTTGGTATAACCGACTTCTGAATATTACAGAAGCTGATGCTTTTATAATACCTTCTCTTTCTACTTGGTGGTTGGTGAATGAATATATGTTAAGAGGATTTGATGTAGCTAAAGTTTGTTTATGTGCTGGTTTTTGAAGGAAAGAGCAACAGTTC</gDNA_template>
            <first_frame> W  R  M  F  T  G  A  L  P  I  W  P  Q  F  P  S  G  R  P  V  S  L  A  A  A  A  I  E  Q  K  L  K  K  R  D  I  *  *  *  *  L  K  *  R  D  F  D  G  T  T  I  S  L  L  T  F  S  F  P  F  S  C  K  S  N  I  F  F  L  L  L  Y  A  S  C  S  P  L  S  F  S  L  L  S  A  P  Q  K  :  S  G  E  V  E  S  P  R  V  S  M  G  A  F  S  N  E  E  L  S  F  S  S  N  F  D  F  A  S  S  Q  D  L  R  F  S  K  Q  I  H  D  N  V  H  G  N  I  Y  I  D  P  :  L  Y  L  K  F  I  D  T  E  Q  F  Q  R :   L  R  D  L  K  Q  L   : G  V  T  H  M  V  Y  P  G  A  V  H  S  R  F  E  H  S  L  G  V  Y  W  L  A  N  E  A  V  H  K  L  K  T  H  Q  :  G  M  E  L  G  I  D  H  F  D  I  Q  T  V  K  L  A   : G  L  L  H  D  I  G  H  G  P  F  S  H  L  F  E  R  E  F  L  P  Q  V  C  N  G  L  D  W :   S  H  E  Q  M  S  V  D  M  I  D  H  I  V  D  E  R  R  I  D  I  D  S  G  T  I  K  R  V  K  :  E  M  I  L  A  S  S  K  F  T  L  T  K  :  S  S  R  E  K  Q  F  L  Y  D  I  V  A  N  G  R  N  G  V  D  V  D  K :   F  D  Y  I  V  R  D  S  R  A  C  A  V  G  C  N  F  Q  F  E  R :   L  M  E  T  M  R  V  L  G  D  E  I  C  Y  R  A  K  D   : Y  L  T  I  H  K  L  F  A  T  R  A  D  L  H  R  T  V  Y  T  H  A  K  V  K  :  A  I  E  L  M  I  V  D  A  L  V  K  A  N  D  Y  L  H  I  S  S  H  I  E  H  P  S  Q  Y  W  K  :  L  D  D  T  I  L  K  T  I  E  T  A  P  D  P  E  L  K  E  S  R  D  L  I  L  R  V  R  R  R  D  L  Y  Q  :  F  C  N  E  Y  A  V  P  R  D  K  I  E  H  F  K  D  V  T  A  H  D  I  V  C  S  Q  :  K  S  S  S  E  T  L  N  E  E  D  V  A  V  T  N  V  R  I  D  L  T  R  G  R  H  N  P  L  E  S :   I  H  F  F  K  :  D  Y  E  S  E  E  K  F  S  I  P  D  D  R  I  S  H  L  L  P  S  S  Y  Q  D  M  I  V  R  V  Y  S  K  K  P  H  L  :  V  E  A  I  S  D  A  F  E  N  F  Q  L  K  T  Y  G  I  K  A  Q  V  H  A  T  P  E  K  K  K  R  R  V  *  Y  F  P  S  H  H  Y  K  I  H  S  R  Y  M  *  L  *  Y  I  S  S  N  I  L  Q  S  I  C  T  E  V  F  K  *  H  V  K  G  L  S  R  V  I  L  E  F  L  *  K  V  A  T  I  Y  W  I  *  *  Y  P  P  S  T  L  N  N  F  L  Y  P  S  I  T  R  K  M  D  F  L  V  *  P  T  S  E  Y  Y  R  S  *  C  F  Y  N  T  F  S  F  Y  L  V  V  G  E  *  I  Y  V  K  R  I  *  C  S  *  S  L  F  M  C  W  F  L  K  E  R  A  T  V  </first_frame>
            <second_frame>  G  E  C  S  L  A  H  C  L  S  G  P  N  S  L  A  D  G  L  C  R  L  L  L  Q  Q  *  N  R  N  *  K  N  E  T  F  D  N  S  N  *  N  K  E  T  L  T  A  L  L  Y  H  Y  S  H  S  P  S  H  F  R  A  N  Q  I  Y  S  S  S  Y  S  T  P  A  A  L  L  S  L  S  L  S  F  R  H  L  K  R :   V  V  K  *  R  A  Q  G  *  V  W  E  L  F  Q  M  K  N  L  V  S  L  P  I  S  T  S  L  P  L  R  I  S  D  S  L  S  K  S  M  T  T  F  T  A  T  S  T  S  T  R :   S  T  *  S  S  L  T  Q  N  N  F  K   : G  F  V  I  L  N  N  *  :  V  *  H  T  W  S  I  Q  E  Q  C  I  L  D  L  S  I  P  L  E  C  I  G  L  P  M  K  L  S  I  S  L  K  P  T  K :   V  W  S  L  E  L  I  T  L  I  Y  K  Q  *  N  L  Q  :  V  F  Y  M  I  L  D  M  D  L  L  A  T  C  L  N  A  S  F  F  L  K  F  A  M  D  W  T   : G  L  M  S  K  C  L  W  T  *  L  I  T  L  L  M  S  V  V  L  I  L  I  L  E  P  L  K  G  S  R :   K  *  Y  L  L  V  P  S  L  R  *  Q  K :   A  Q  G  R  S  S  S  Y  M  I  L  W  L  M  V  E  M  E  S  M  L  T   : S  L  I  T  L  S  E  I  A  V  R  V  Q  *  D  A  I  F  N  L  R   : G  *  W  K  L  *  E  Y  W  E  M  R  Y  V  I  E  P  K  I  :  I  *  P  S  T  S  Y  L  P  H  E  L  I  Y  T  E  L  F  I  L  T  L  K  *  R :   Q  *  S  L  *  L  *  M  H  *  *  K  Q  M  I  I  Y  T  Y  H  H  I  *  S  I  L  L  N  T  G  S :   *  M  T  P  F  *  K  P  S  R  L  L  Q  T  R  N  *  R  N  L  G  I  *  S  F  V  S  E  G  E  I  C  T  S :   S  V  M  S  M  L  S  Q  E  T  K  *  S  I  S  R  M  S  R  H  M  I  L  S  V  R  R :   K  V  A  V  R  H  L  M  K  R  M  L  L  *  P  M  S  G  *  I  *  H  A  G  G  I  I  R  L  K   : V  S  I  F  S  R :   I  M  K  V  R  R  S  S  L  Y  L  M  I  A  S  A  T  C  C  H  H  H  I  K  I  *  L  *  E  S  T  P  K  S  P  T  W :   W  K  L  F  L  M  H  L  K  I  S  S  *  R  L  M  E  *  K  H  R  F  M  Q  H  L  R  R  K  N  A  V  Y  D  I  S  P  V  I  T  T  K  S  T  V  D  I  C  D  Y  S  I  S  Q  A  T  Y  Y  S  P  F  V  Q  K  S  L  N  D  T  *  K  A  S  Q  E  L  Y  *  S  F  C  R  K  L  L  P  F  T  G  Y  D  N  I  L  R  V  L  S  T  I  S  C  I  L  A  L  L  E  K  W  I  S  W  Y  N  R  L  L  N  I  T  E  A  D  A  F  I  I  P  S  L  S  T  W  W  L  V  N  E  Y  M  L  R  G  F  D  V  A  K  V  C  L  C  A  G  F  *  R  K  E  Q  Q  F </second_frame>
            <third_frame>   A  N  V  H  W  R  T  A  Y  L  A  P  I  P  *  R  T  A  C  V  A  C  C  C  S  N  R  T  E  I  K  K  T  R  H  L  I  I  V  I  E  I  K  R  L  *  R  H  Y  Y  I  T  T  H  I  L  L  P  I  F  V  Q  I  K  Y  I  L  P  P  T  L  R  Q  L  L  S  S  L  F  L  S  P  F  G  T  S  K   : E  W  *  S  R  E  P  K  G  E  Y  G  S  F  F  K  *  R  T  *  F  L  F  Q  F  R  L  R  F  L  S  G  S  Q  I  L  *  A  N  P  *  Q  R  S  R  Q  H  L  H  R  P   : A  L  L  E  V  H  *  H  R  T  I  S  K  :  A  S  *  S  *  T  T  R :   C  D  T  H  G  L  S  R  S  S  A  F  *  I  *  A  F  P  W  S  V  L  A  C  Q  *  S  C  P  *  A  *  N  P  P   : R  Y  G  A  W  N  *  S  L  *  Y  T  N  S  E  T  C  R :   S  S  T  *  Y  W  T  W  T  F  *  P  L  V  *  T  R  V  S  S  S  S  L  Q  W  I  G  L  :  V  S  *  A  N  V  C  G  H  D  *  S  H  C  *  *  A  S  Y  *  Y  *  F  W  N  H  *  K  G  Q   : G  N  D  T  C  *  F  Q  V  Y  V  D  K   : K  L  K  G  E  A  V  L  I  *  Y  C  G  *  W  S  K  W  S  R  C  *  Q  :  V  *  L  H  C  P  R  *  P  C  V  C  S  R  M  Q  F  S  I  *  E  :  V  D  G  N  Y  E  S  I  G  R  *  D  M  L  S  S  Q  R  L :   F  N  H  P  Q  V  I  C  H  T  S  *  S  T  Q  N  C  L  Y  S  R  *  S  E   : G  N  R  A  Y  D  C  R  C  T  S  E  S  K  *  L  S  T  H  I  I  T  Y  R  A  S  F  S  I  L  E   : V  R  *  H  H  F  K  N  H  R  D  C  S  R  P  G  T  E  G  I  *  G  F  D  P  S  C  P  K  E  R  F  V  P   : V  L  *  *  V  C  C  P  K  R  Q  N  R  A  F  Q  G  C  H  G  T  *  Y  C  L  F  A   : E  K  *  Q  *  D  T  *  *  R  G  C  C  C  D  Q  C  Q  D  R  S  D  T  R  E  A  *  S  A  *  K  :  Y  P  F  F  Q   : G  L  *  K  *  G  E  V  L  Y  T  *  *  S  H  Q  P  L  A  A  I  I  I  S  R  Y  D  C  E  S  L  L  Q  K  A  P  P   : G  G  S  Y  F  *  C  I  *  K  F  P  V  K  D  L  W  N  K  S  T  G  S  C  N  T  *  E  E  K  T  P  C  M  I  F  P  Q  S  S  L  Q  N  P  Q  *  I  Y  V  I  I  V  Y  L  K  Q  H  I  T  V  H  L  Y  R  S  L  *  M  T  R  E  R  P  L  K  S  Y  T  R  V  F  V  E  S  C  Y  H  L  L  D  M  I  I  S  S  E  Y  S  Q  Q  F  L  V  S  *  H  Y  S  K  N  G  F  L  G  I  T  D  F  *  I  L  Q  K  L  M  L  L  *  Y  L  L  F  L  L  G  G  W  *  M  N  I  C  *  E  D  L  M  *  L  K  F  V  Y  V  L  V  F  E  G  K  S  N  S   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02HBa0236E02.1" strand="+"/>
                <serials PGL_serial="15" AGS_serial="2" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="74241" stop="74375"/>
                    <exon start="74467" stop="74619"/>
                    <exon start="75587" stop="75624"/>
                    <exon start="75859" stop="75881"/>
                    <exon start="76747" stop="76853"/>
                    <exon start="76940" stop="76991"/>
                    <exon start="77078" stop="77162"/>
                    <exon start="77856" stop="77946"/>
                    <exon start="78746" stop="78784"/>
                    <exon start="78982" stop="79049"/>
                    <exon start="79143" stop="79205"/>
                    <exon start="79311" stop="79366"/>
                    <exon start="79447" stop="79520"/>
                    <exon start="79653" stop="79745"/>
                    <exon start="79827" stop="79928"/>
                    <exon start="80027" stop="80107"/>
                    <exon start="80178" stop="80269"/>
                    <exon start="80408" stop="80423"/>
                    <exon start="80533" stop="80643"/>
                    <exon start="80736" stop="80837"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>1578</number_coding_nucleotides>
                  <number_encoded_amino_acids>526</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>RDFDGTTISLLTFSFPFSCKSNIFFLLLYASCSPLSFSLLSAPQKSGEVESPRVSMGAFSNEELSFSSNFDFASSQDLRFSKQIHDNVHGNIYIDPLYLKFIDTEQFQRLRDLKQLGVTHMVYPGAVHSRFEHSLGVYWLANEAVHKLKTHQGMELGIDHFDIQTVKLAGLLHDIGHGPFSHLFEREFLPQVCNGLDWSHEQMSVDMIDHIVDERRIDIDSGTIKRVKEMILASSKFTLTKSSREKQFLYDIVANGRNGVDVDKFDYIVRDSRACAVGCNFQFERLMETMRVLGDEICYRAKDYLTIHKLFATRADLHRTVYTHAKVKAIELMIVDALVKANDYLHISSHIEHPSQYWKLDDTILKTIETAPDPELKESRDLILRVRRRDLYQFCNEYAVPRDKIEHFKDVTAHDIVCSQKSSSETLNEEDVAVTNVRIDLTRGRHNPLESIHFFKDYESEEKFSIPDDRISHLLPSSYQDMIVRVYSKKPHLVEAISDAFENFQLKTYGIKAQVHATPEKKKRRV*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C02HBa0236E02.1" strand="+"/>
                <serials PGL_serial="15" AGS_serial="2" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="80971" stop="81207"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>234</number_coding_nucleotides>
                  <number_encoded_amino_acids>78</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>SFCRKLLPFTGYDNILRVLSTISCILALLEKWISWYNRLLNITEADAFIIPSLSTWWLVNEYMLRGFDVAKVCLCAGF*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="3">
          <exon_coordinates>
            <exon e_start="74112" e_stop="74375"/>
            <exon e_start="74467" e_stop="74619"/>
            <exon e_start="75587" e_stop="75624"/>
            <exon e_start="75859" e_stop="75881"/>
            <exon e_start="76747" e_stop="76853"/>
            <exon e_start="76940" e_stop="76991"/>
            <exon e_start="77078" e_stop="77162"/>
            <exon e_start="77856" e_stop="77946"/>
            <exon e_start="78746" e_stop="78784"/>
            <exon e_start="78982" e_stop="79049"/>
            <exon e_start="79143" e_stop="79205"/>
            <exon e_start="79311" e_stop="79366"/>
            <exon e_start="79447" e_stop="79520"/>
            <exon e_start="79653" e_stop="79928"/>
            <exon e_start="80027" e_stop="80107"/>
            <exon e_start="80178" e_stop="80269"/>
            <exon e_start="80408" e_stop="80423"/>
            <exon e_start="80533" e_stop="80643"/>
            <exon e_start="80736" e_stop="81118"/>
            <exon e_start="81487" e_stop="81514"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.999" acc_prob="1.000" e_score="0.837"/>
          <exon-intron don_prob="0.998" acc_prob="0.915" e_score="1.000"/>
          <exon-intron don_prob="1.000" acc_prob="0.964" e_score="1.000"/>
          <exon-intron don_prob="0.991" acc_prob="0.908" e_score="1.000"/>
          <exon-intron don_prob="0.864" acc_prob="0.996" e_score="1.000"/>
          <exon-intron don_prob="0.983" acc_prob="0.938" e_score="1.000"/>
          <exon-intron don_prob="0.882" acc_prob="1.000" e_score="1.000"/>
          <exon-intron don_prob="1.000" acc_prob="0.768" e_score="1.000"/>
          <exon-intron don_prob="0.822" acc_prob="0.979" e_score="1.000"/>
          <exon-intron don_prob="0.986" acc_prob="0.987" e_score="1.000"/>
          <exon-intron don_prob="0.939" acc_prob="0.976" e_score="1.000"/>
          <exon-intron don_prob="0.982" acc_prob="0.993" e_score="1.000"/>
          <exon-intron don_prob="0.961" acc_prob="0.999" e_score="1.000"/>
          <exon-intron don_prob="0.873" acc_prob="0.993" e_score="0.996"/>
          <exon-intron don_prob="0.957" acc_prob="0.992" e_score="1.000"/>
          <exon-intron don_prob="0.470" acc_prob="0.434" e_score="1.000"/>
          <exon-intron don_prob="0.990" acc_prob="0.956" e_score="1.000"/>
          <exon-intron don_prob="0.408" acc_prob="0.976" e_score="1.000"/>
          <exon-intron don_prob="0.000" acc_prob="0.000" e_score="1.000"/>
          <exon-only e_score="0.786"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.837">
            <gDNA_exon_boundary e_start="74112" e_stop="74375" e_length="264"/>
          </exon>
          <intron i_serial="1" don_prob="0.999" acc_prob="1.000">
            <gDNA_intron_boundary i_start="74376" i_stop="74466" i_length="91"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="74467" e_stop="74619" e_length="153"/>
          </exon>
          <intron i_serial="2" don_prob="0.998" acc_prob="0.915">
            <gDNA_intron_boundary i_start="74620" i_stop="75586" i_length="967"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="75587" e_stop="75624" e_length="38"/>
          </exon>
          <intron i_serial="3" don_prob="1.000" acc_prob="0.964">
            <gDNA_intron_boundary i_start="75625" i_stop="75858" i_length="234"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="75859" e_stop="75881" e_length="23"/>
          </exon>
          <intron i_serial="4" don_prob="0.991" acc_prob="0.908">
            <gDNA_intron_boundary i_start="75882" i_stop="76746" i_length="865"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="76747" e_stop="76853" e_length="107"/>
          </exon>
          <intron i_serial="5" don_prob="0.864" acc_prob="0.996">
            <gDNA_intron_boundary i_start="76854" i_stop="76939" i_length="86"/>
          </intron>
          <exon e_serial="6" e_score="1.000">
            <gDNA_exon_boundary e_start="76940" e_stop="76991" e_length="52"/>
          </exon>
          <intron i_serial="6" don_prob="0.983" acc_prob="0.938">
            <gDNA_intron_boundary i_start="76992" i_stop="77077" i_length="86"/>
          </intron>
          <exon e_serial="7" e_score="1.000">
            <gDNA_exon_boundary e_start="77078" e_stop="77162" e_length="85"/>
          </exon>
          <intron i_serial="7" don_prob="0.882" acc_prob="1.000">
            <gDNA_intron_boundary i_start="77163" i_stop="77855" i_length="693"/>
          </intron>
          <exon e_serial="8" e_score="1.000">
            <gDNA_exon_boundary e_start="77856" e_stop="77946" e_length="91"/>
          </exon>
          <intron i_serial="8" don_prob="1.000" acc_prob="0.768">
            <gDNA_intron_boundary i_start="77947" i_stop="78745" i_length="799"/>
          </intron>
          <exon e_serial="9" e_score="1.000">
            <gDNA_exon_boundary e_start="78746" e_stop="78784" e_length="39"/>
          </exon>
          <intron i_serial="9" don_prob="0.822" acc_prob="0.979">
            <gDNA_intron_boundary i_start="78785" i_stop="78981" i_length="197"/>
          </intron>
          <exon e_serial="10" e_score="1.000">
            <gDNA_exon_boundary e_start="78982" e_stop="79049" e_length="68"/>
          </exon>
          <intron i_serial="10" don_prob="0.986" acc_prob="0.987">
            <gDNA_intron_boundary i_start="79050" i_stop="79142" i_length="93"/>
          </intron>
          <exon e_serial="11" e_score="1.000">
            <gDNA_exon_boundary e_start="79143" e_stop="79205" e_length="63"/>
          </exon>
          <intron i_serial="11" don_prob="0.939" acc_prob="0.976">
            <gDNA_intron_boundary i_start="79206" i_stop="79310" i_length="105"/>
          </intron>
          <exon e_serial="12" e_score="1.000">
            <gDNA_exon_boundary e_start="79311" e_stop="79366" e_length="56"/>
          </exon>
          <intron i_serial="12" don_prob="0.982" acc_prob="0.993">
            <gDNA_intron_boundary i_start="79367" i_stop="79446" i_length="80"/>
          </intron>
          <exon e_serial="13" e_score="1.000">
            <gDNA_exon_boundary e_start="79447" e_stop="79520" e_length="74"/>
          </exon>
          <intron i_serial="13" don_prob="0.961" acc_prob="0.999">
            <gDNA_intron_boundary i_start="79521" i_stop="79652" i_length="132"/>
          </intron>
          <exon e_serial="14" e_score="0.996">
            <gDNA_exon_boundary e_start="79653" e_stop="79928" e_length="276"/>
          </exon>
          <intron i_serial="14" don_prob="0.873" acc_prob="0.993">
            <gDNA_intron_boundary i_start="79929" i_stop="80026" i_length="98"/>
          </intron>
          <exon e_serial="15" e_score="1.000">
            <gDNA_exon_boundary e_start="80027" e_stop="80107" e_length="81"/>
          </exon>
          <intron i_serial="15" don_prob="0.957" acc_prob="0.992">
            <gDNA_intron_boundary i_start="80108" i_stop="80177" i_length="70"/>
          </intron>
          <exon e_serial="16" e_score="1.000">
            <gDNA_exon_boundary e_start="80178" e_stop="80269" e_length="92"/>
          </exon>
          <intron i_serial="16" don_prob="0.470" acc_prob="0.434">
            <gDNA_intron_boundary i_start="80270" i_stop="80407" i_length="138"/>
          </intron>
          <exon e_serial="17" e_score="1.000">
            <gDNA_exon_boundary e_start="80408" e_stop="80423" e_length="16"/>
          </exon>
          <intron i_serial="17" don_prob="0.990" acc_prob="0.956">
            <gDNA_intron_boundary i_start="80424" i_stop="80532" i_length="109"/>
          </intron>
          <exon e_serial="18" e_score="1.000">
            <gDNA_exon_boundary e_start="80533" e_stop="80643" e_length="111"/>
          </exon>
          <intron i_serial="18" don_prob="0.408" acc_prob="0.976">
            <gDNA_intron_boundary i_start="80644" i_stop="80735" i_length="92"/>
          </intron>
          <exon e_serial="19" e_score="1.000">
            <gDNA_exon_boundary e_start="80736" e_stop="81118" e_length="383"/>
          </exon>
          <intron i_serial="19" don_prob="0.000" acc_prob="0.000">
            <gDNA_intron_boundary i_start="81119" i_stop="81486" i_length="368"/>
          </intron>
          <exon e_serial="20" e_score="0.786">
            <gDNA_exon_boundary e_start="81487" e_stop="81514" e_length="28"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="74112" stop="74375"/>
              <exon start="74467" stop="74619"/>
              <exon start="75587" stop="75624"/>
              <exon start="75859" stop="75881"/>
              <exon start="76747" stop="76853"/>
              <exon start="76940" stop="76991"/>
              <exon start="77078" stop="77104"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E414043" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="74164" stop="74375"/>
              <exon start="74467" stop="74619"/>
              <exon start="75587" stop="75624"/>
              <exon start="75859" stop="75881"/>
              <exon start="76747" stop="76853"/>
              <exon start="76940" stop="76991"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E332503" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="74236" stop="74375"/>
              <exon start="74467" stop="74619"/>
              <exon start="75587" stop="75624"/>
              <exon start="75859" stop="75881"/>
              <exon start="76747" stop="76853"/>
              <exon start="76940" stop="76991"/>
              <exon start="77078" stop="77162"/>
              <exon start="77856" stop="77917"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E561780" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="74346" stop="74375"/>
              <exon start="74467" stop="74619"/>
              <exon start="75587" stop="75624"/>
              <exon start="75859" stop="75881"/>
              <exon start="76747" stop="76801"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E338725" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="74515" stop="74619"/>
              <exon start="75587" stop="75624"/>
              <exon start="75859" stop="75881"/>
              <exon start="76747" stop="76853"/>
              <exon start="76940" stop="76991"/>
              <exon start="77078" stop="77162"/>
              <exon start="77856" stop="77946"/>
              <exon start="78746" stop="78784"/>
              <exon start="78982" stop="79049"/>
              <exon start="79143" stop="79205"/>
              <exon start="79311" stop="79366"/>
              <exon start="79447" stop="79512"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E548022" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="79336" stop="79366"/>
              <exon start="79447" stop="79520"/>
              <exon start="79653" stop="79928"/>
              <exon start="80027" stop="80107"/>
              <exon start="80178" stop="80201"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E323877" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="79908" stop="79928"/>
              <exon start="80027" stop="80107"/>
              <exon start="80178" stop="80269"/>
              <exon start="80408" stop="80423"/>
              <exon start="80533" stop="80643"/>
              <exon start="80736" stop="81118"/>
              <exon start="81487" stop="81514"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E538230" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="15" AGS_serial="3" gDNA_strand="+"/>
          <translation>
            <gDNA_template>TGGCGAATGTTCACTGGCGCACTGCCTATCTGGCCCCAATTCCCTAGCGGACGGCCTGTGTCGCTTGCTGCTGCAGCAATAGAACAGAAATTAAAAAAACGAGACATTTGATAATAGTAATTGAAATAAAGAGACTTTGACGGCACTACTATATCACTACTCACATTCTCCTTCCCATTTTCGTGCAAATCAAATATATTCTTCCTCCTACTCTACGCCAGCTGCTCTCCTCTCTCTTTCTCTCTCCTTTCGGCACCTCAAAAG : AGTGGTGAAGTAGAGAGCCCAAGGGTGAGTATGGGAGCTTTTTCAAATGAAGAACTTAGTTTCTCTTCCAATTTCGACTTCGCTTCCTCTCAGGATCTCAGATTCTCTAAGCAAATCCATGACAACGTTCACGGCAACATCTACATCGACCCG : CTCTACTTGAAGTTCATTGACACAGAACAATTTCAAAG : GCTTCGTGATCTTAAACAACTAG : GTGTGACACACATGGTCTATCCAGGAGCAGTGCATTCTAGATTTGAGCATTCCCTTGGAGTGTATTGGCTTGCCAATGAAGCTGTCCATAAGCTTAAAACCCACCAA : GGTATGGAGCTTGGAATTGATCACTTTGATATACAAACAGTGAAACTTGCAG : GTCTTCTACATGATATTGGACATGGACCTTTTAGCCACTTGTTTGAACGCGAGTTTCTTCCTCAAGTTTGCAATGGATTGGACTG : GTCTCATGAGCAAATGTCTGTGGACATGATTGATCACATTGTTGATGAGCGTCGTATTGATATTGATTCTGGAACCATTAAAAGGGTCAAG : GAAATGATACTTGCTAGTTCCAAGTTTACGTTGACAAAA : AGCTCAAGGGAGAAGCAGTTCTTATATGATATTGTGGCTAATGGTCGAAATGGAGTCGATGTTGACAA : GTTTGATTACATTGTCCGAGATAGCCGTGCGTGTGCAGTAGGATGCAATTTTCAATTTGAGAG : GTTGATGGAAACTATGAGAGTATTGGGAGATGAGATATGTTATCGAGCCAAAGATT : ATTTAACCATCCACAAGTTATTTGCCACACGAGCTGATCTACACAGAACTGTTTATACTCACGCTAAAGTGAAG : GCAATAGAGCTTATGATTGTAGATGCACTAGTGAAAGCAAATGATTATCTACACATATCATCACATATAGAGCATCCTTCTCAATACTGGAAGGTCGGCATGGTCTTTTTGTTAGCTTCAACCTCCTTAATTCATGGAACCATGAAAATAATTTCTCTGTGTATGTGGAAGTAGTTAGATGACACCATTTTAAAAACCATCGAGACTGCTCCAGACCCGGAACTGAAGGAATCTAGGGATTTGATCCTTCGTGTCCGAAGGAGAGATTTGTACCAG : TTCTGTAATGAGTATGCTGTCCCAAGAGACAAAATAGAGCATTTCAAGGATGTCACGGCACATGATATTGTCTGTTCGCAG : AAAAGTAGCAGTGAGACACTTAATGAAGAGGATGTTGCTGTGACCAATGTCAGGATAGATCTGACACGCGGGAGGCATAATCCGCTTGAAAG : TATCCATTTTTTCAAG : GATTATGAAAGTGAGGAGAAGTTCTCTATACCTGATGATCGCATCAGCCACTTGCTGCCATCATCATATCAAGATATGATTGTGAGAGTCTACTCCAAAAAGCCCCACCTG : GTGGAAGCTATTTCTGATGCATTTGAAAATTTCCAGTTAAAGACTTATGGAATAAAAGCACAGGTTCATGCAACACCTGAGAAGAAAAAACGCCGTGTATGATATTTCCCCAGTCATCACTACAAAATCCACAGTAGATATATGTGATTATAGTATATCTCAAGCAACATATTACAGTCCATTTGTACAGAAGTCTTTAAATGACACGTGAAAGGCCTCTCAAGAGTTATACTAGAGTTTTTGTAGAAAGTTGCTACCATTTACTGGATATGATAATATCCTCCGAGTACTCTCAACAATTTCTTGTATCCTAGCATTACTCGAAAAATGGATTTCTTGGTATAACCGACTTCTGAATATTACAGAAGCTGATGCTTTTATAA : ATAAAAAGAAAAAAAAAAACAAATTGAA</gDNA_template>
            <first_frame> W  R  M  F  T  G  A  L  P  I  W  P  Q  F  P  S  G  R  P  V  S  L  A  A  A  A  I  E  Q  K  L  K  K  R  D  I  *  *  *  *  L  K  *  R  D  F  D  G  T  T  I  S  L  L  T  F  S  F  P  F  S  C  K  S  N  I  F  F  L  L  L  Y  A  S  C  S  P  L  S  F  S  L  L  S  A  P  Q  K  :  S  G  E  V  E  S  P  R  V  S  M  G  A  F  S  N  E  E  L  S  F  S  S  N  F  D  F  A  S  S  Q  D  L  R  F  S  K  Q  I  H  D  N  V  H  G  N  I  Y  I  D  P  :  L  Y  L  K  F  I  D  T  E  Q  F  Q  R :   L  R  D  L  K  Q  L   : G  V  T  H  M  V  Y  P  G  A  V  H  S  R  F  E  H  S  L  G  V  Y  W  L  A  N  E  A  V  H  K  L  K  T  H  Q  :  G  M  E  L  G  I  D  H  F  D  I  Q  T  V  K  L  A   : G  L  L  H  D  I  G  H  G  P  F  S  H  L  F  E  R  E  F  L  P  Q  V  C  N  G  L  D  W :   S  H  E  Q  M  S  V  D  M  I  D  H  I  V  D  E  R  R  I  D  I  D  S  G  T  I  K  R  V  K  :  E  M  I  L  A  S  S  K  F  T  L  T  K  :  S  S  R  E  K  Q  F  L  Y  D  I  V  A  N  G  R  N  G  V  D  V  D  K :   F  D  Y  I  V  R  D  S  R  A  C  A  V  G  C  N  F  Q  F  E  R :   L  M  E  T  M  R  V  L  G  D  E  I  C  Y  R  A  K  D   : Y  L  T  I  H  K  L  F  A  T  R  A  D  L  H  R  T  V  Y  T  H  A  K  V  K  :  A  I  E  L  M  I  V  D  A  L  V  K  A  N  D  Y  L  H  I  S  S  H  I  E  H  P  S  Q  Y  W  K  V  G  M  V  F  L  L  A  S  T  S  L  I  H  G  T  M  K  I  I  S  L  C  M  W  K  *  L  D  D  T  I  L  K  T  I  E  T  A  P  D  P  E  L  K  E  S  R  D  L  I  L  R  V  R  R  R  D  L  Y  Q  :  F  C  N  E  Y  A  V  P  R  D  K  I  E  H  F  K  D  V  T  A  H  D  I  V  C  S  Q  :  K  S  S  S  E  T  L  N  E  E  D  V  A  V  T  N  V  R  I  D  L  T  R  G  R  H  N  P  L  E  S :   I  H  F  F  K  :  D  Y  E  S  E  E  K  F  S  I  P  D  D  R  I  S  H  L  L  P  S  S  Y  Q  D  M  I  V  R  V  Y  S  K  K  P  H  L  :  V  E  A  I  S  D  A  F  E  N  F  Q  L  K  T  Y  G  I  K  A  Q  V  H  A  T  P  E  K  K  K  R  R  V  *  Y  F  P  S  H  H  Y  K  I  H  S  R  Y  M  *  L  *  Y  I  S  S  N  I  L  Q  S  I  C  T  E  V  F  K  *  H  V  K  G  L  S  R  V  I  L  E  F  L  *  K  V  A  T  I  Y  W  I  *  *  Y  P  P  S  T  L  N  N  F  L  Y  P  S  I  T  R  K  M  D  F  L  V  *  P  T  S  E  Y  Y  R  S  *  C  F  Y  K :   *  K  E  K  K  K  Q  I  E </first_frame>
            <second_frame>  G  E  C  S  L  A  H  C  L  S  G  P  N  S  L  A  D  G  L  C  R  L  L  L  Q  Q  *  N  R  N  *  K  N  E  T  F  D  N  S  N  *  N  K  E  T  L  T  A  L  L  Y  H  Y  S  H  S  P  S  H  F  R  A  N  Q  I  Y  S  S  S  Y  S  T  P  A  A  L  L  S  L  S  L  S  F  R  H  L  K  R :   V  V  K  *  R  A  Q  G  *  V  W  E  L  F  Q  M  K  N  L  V  S  L  P  I  S  T  S  L  P  L  R  I  S  D  S  L  S  K  S  M  T  T  F  T  A  T  S  T  S  T  R :   S  T  *  S  S  L  T  Q  N  N  F  K   : G  F  V  I  L  N  N  *  :  V  *  H  T  W  S  I  Q  E  Q  C  I  L  D  L  S  I  P  L  E  C  I  G  L  P  M  K  L  S  I  S  L  K  P  T  K :   V  W  S  L  E  L  I  T  L  I  Y  K  Q  *  N  L  Q  :  V  F  Y  M  I  L  D  M  D  L  L  A  T  C  L  N  A  S  F  F  L  K  F  A  M  D  W  T   : G  L  M  S  K  C  L  W  T  *  L  I  T  L  L  M  S  V  V  L  I  L  I  L  E  P  L  K  G  S  R :   K  *  Y  L  L  V  P  S  L  R  *  Q  K :   A  Q  G  R  S  S  S  Y  M  I  L  W  L  M  V  E  M  E  S  M  L  T   : S  L  I  T  L  S  E  I  A  V  R  V  Q  *  D  A  I  F  N  L  R   : G  *  W  K  L  *  E  Y  W  E  M  R  Y  V  I  E  P  K  I  :  I  *  P  S  T  S  Y  L  P  H  E  L  I  Y  T  E  L  F  I  L  T  L  K  *  R :   Q  *  S  L  *  L  *  M  H  *  *  K  Q  M  I  I  Y  T  Y  H  H  I  *  S  I  L  L  N  T  G  R  S  A  W  S  F  C  *  L  Q  P  P  *  F  M  E  P  *  K  *  F  L  C  V  C  G  S  S  *  M  T  P  F  *  K  P  S  R  L  L  Q  T  R  N  *  R  N  L  G  I  *  S  F  V  S  E  G  E  I  C  T  S :   S  V  M  S  M  L  S  Q  E  T  K  *  S  I  S  R  M  S  R  H  M  I  L  S  V  R  R :   K  V  A  V  R  H  L  M  K  R  M  L  L  *  P  M  S  G  *  I  *  H  A  G  G  I  I  R  L  K   : V  S  I  F  S  R :   I  M  K  V  R  R  S  S  L  Y  L  M  I  A  S  A  T  C  C  H  H  H  I  K  I  *  L  *  E  S  T  P  K  S  P  T  W :   W  K  L  F  L  M  H  L  K  I  S  S  *  R  L  M  E  *  K  H  R  F  M  Q  H  L  R  R  K  N  A  V  Y  D  I  S  P  V  I  T  T  K  S  T  V  D  I  C  D  Y  S  I  S  Q  A  T  Y  Y  S  P  F  V  Q  K  S  L  N  D  T  *  K  A  S  Q  E  L  Y  *  S  F  C  R  K  L  L  P  F  T  G  Y  D  N  I  L  R  V  L  S  T  I  S  C  I  L  A  L  L  E  K  W  I  S  W  Y  N  R  L  L  N  I  T  E  A  D  A  F  I   : N  K  K  K  K  K  N  K  L   </second_frame>
            <third_frame>   A  N  V  H  W  R  T  A  Y  L  A  P  I  P  *  R  T  A  C  V  A  C  C  C  S  N  R  T  E  I  K  K  T  R  H  L  I  I  V  I  E  I  K  R  L  *  R  H  Y  Y  I  T  T  H  I  L  L  P  I  F  V  Q  I  K  Y  I  L  P  P  T  L  R  Q  L  L  S  S  L  F  L  S  P  F  G  T  S  K   : E  W  *  S  R  E  P  K  G  E  Y  G  S  F  F  K  *  R  T  *  F  L  F  Q  F  R  L  R  F  L  S  G  S  Q  I  L  *  A  N  P  *  Q  R  S  R  Q  H  L  H  R  P   : A  L  L  E  V  H  *  H  R  T  I  S  K  :  A  S  *  S  *  T  T  R :   C  D  T  H  G  L  S  R  S  S  A  F  *  I  *  A  F  P  W  S  V  L  A  C  Q  *  S  C  P  *  A  *  N  P  P   : R  Y  G  A  W  N  *  S  L  *  Y  T  N  S  E  T  C  R :   S  S  T  *  Y  W  T  W  T  F  *  P  L  V  *  T  R  V  S  S  S  S  L  Q  W  I  G  L  :  V  S  *  A  N  V  C  G  H  D  *  S  H  C  *  *  A  S  Y  *  Y  *  F  W  N  H  *  K  G  Q   : G  N  D  T  C  *  F  Q  V  Y  V  D  K   : K  L  K  G  E  A  V  L  I  *  Y  C  G  *  W  S  K  W  S  R  C  *  Q  :  V  *  L  H  C  P  R  *  P  C  V  C  S  R  M  Q  F  S  I  *  E  :  V  D  G  N  Y  E  S  I  G  R  *  D  M  L  S  S  Q  R  L :   F  N  H  P  Q  V  I  C  H  T  S  *  S  T  Q  N  C  L  Y  S  R  *  S  E   : G  N  R  A  Y  D  C  R  C  T  S  E  S  K  *  L  S  T  H  I  I  T  Y  R  A  S  F  S  I  L  E  G  R  H  G  L  F  V  S  F  N  L  L  N  S  W  N  H  E  N  N  F  S  V  Y  V  E  V  V  R  *  H  H  F  K  N  H  R  D  C  S  R  P  G  T  E  G  I  *  G  F  D  P  S  C  P  K  E  R  F  V  P   : V  L  *  *  V  C  C  P  K  R  Q  N  R  A  F  Q  G  C  H  G  T  *  Y  C  L  F  A   : E  K  *  Q  *  D  T  *  *  R  G  C  C  C  D  Q  C  Q  D  R  S  D  T  R  E  A  *  S  A  *  K  :  Y  P  F  F  Q   : G  L  *  K  *  G  E  V  L  Y  T  *  *  S  H  Q  P  L  A  A  I  I  I  S  R  Y  D  C  E  S  L  L  Q  K  A  P  P   : G  G  S  Y  F  *  C  I  *  K  F  P  V  K  D  L  W  N  K  S  T  G  S  C  N  T  *  E  E  K  T  P  C  M  I  F  P  Q  S  S  L  Q  N  P  Q  *  I  Y  V  I  I  V  Y  L  K  Q  H  I  T  V  H  L  Y  R  S  L  *  M  T  R  E  R  P  L  K  S  Y  T  R  V  F  V  E  S  C  Y  H  L  L  D  M  I  I  S  S  E  Y  S  Q  Q  F  L  V  S  *  H  Y  S  K  N  G  F  L  G  I  T  D  F  *  I  L  Q  K  L  M  L  L  *  :  I  K  R  K  K  K  T  N  *  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02HBa0236E02.1" strand="+"/>
                <serials PGL_serial="15" AGS_serial="3" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="74241" stop="74375"/>
                    <exon start="74467" stop="74619"/>
                    <exon start="75587" stop="75624"/>
                    <exon start="75859" stop="75881"/>
                    <exon start="76747" stop="76853"/>
                    <exon start="76940" stop="76991"/>
                    <exon start="77078" stop="77162"/>
                    <exon start="77856" stop="77946"/>
                    <exon start="78746" stop="78784"/>
                    <exon start="78982" stop="79049"/>
                    <exon start="79143" stop="79205"/>
                    <exon start="79311" stop="79366"/>
                    <exon start="79447" stop="79520"/>
                    <exon start="79653" stop="79826"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>1155</number_coding_nucleotides>
                  <number_encoded_amino_acids>385</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>RDFDGTTISLLTFSFPFSCKSNIFFLLLYASCSPLSFSLLSAPQKSGEVESPRVSMGAFSNEELSFSSNFDFASSQDLRFSKQIHDNVHGNIYIDPLYLKFIDTEQFQRLRDLKQLGVTHMVYPGAVHSRFEHSLGVYWLANEAVHKLKTHQGMELGIDHFDIQTVKLAGLLHDIGHGPFSHLFEREFLPQVCNGLDWSHEQMSVDMIDHIVDERRIDIDSGTIKRVKEMILASSKFTLTKSSREKQFLYDIVANGRNGVDVDKFDYIVRDSRACAVGCNFQFERLMETMRVLGDEICYRAKDYLTIHKLFATRADLHRTVYTHAKVKAIELMIVDALVKANDYLHISSHIEHPSQYWKVGMVFLLASTSLIHGTMKIISLCMWK*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C02HBa0236E02.1" strand="+"/>
                <serials PGL_serial="15" AGS_serial="3" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="79827" stop="79928"/>
                    <exon start="80027" stop="80107"/>
                    <exon start="80178" stop="80269"/>
                    <exon start="80408" stop="80423"/>
                    <exon start="80533" stop="80643"/>
                    <exon start="80736" stop="80837"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>501</number_coding_nucleotides>
                  <number_encoded_amino_acids>167</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>LDDTILKTIETAPDPELKESRDLILRVRRRDLYQFCNEYAVPRDKIEHFKDVTAHDIVCSQKSSSETLNEEDVAVTNVRIDLTRGRHNPLESIHFFKDYESEEKFSIPDDRISHLLPSSYQDMIVRVYSKKPHLVEAISDAFENFQLKTYGIKAQVHATPEKKKRRV*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="4">
          <exon_coordinates>
            <exon e_start="74443" e_stop="74619"/>
            <exon e_start="75587" e_stop="75624"/>
            <exon e_start="75859" e_stop="75881"/>
            <exon e_start="76747" e_stop="76853"/>
            <exon e_start="76940" e_stop="76991"/>
            <exon e_start="77078" e_stop="77162"/>
            <exon e_start="77856" e_stop="77946"/>
            <exon e_start="78746" e_stop="78784"/>
            <exon e_start="78982" e_stop="79049"/>
            <exon e_start="79143" e_stop="79205"/>
            <exon e_start="79311" e_stop="79366"/>
            <exon e_start="79447" e_stop="79520"/>
            <exon e_start="79653" e_stop="79928"/>
            <exon e_start="80027" e_stop="80107"/>
            <exon e_start="80178" e_stop="80269"/>
            <exon e_start="80408" e_stop="80423"/>
            <exon e_start="80533" e_stop="80643"/>
            <exon e_start="80736" e_stop="81119"/>
            <exon e_start="81495" e_stop="81509"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.998" acc_prob="0.915" e_score="0.994"/>
          <exon-intron don_prob="1.000" acc_prob="0.964" e_score="1.000"/>
          <exon-intron don_prob="0.991" acc_prob="0.908" e_score="1.000"/>
          <exon-intron don_prob="0.864" acc_prob="0.996" e_score="1.000"/>
          <exon-intron don_prob="0.983" acc_prob="0.938" e_score="1.000"/>
          <exon-intron don_prob="0.882" acc_prob="1.000" e_score="1.000"/>
          <exon-intron don_prob="1.000" acc_prob="0.768" e_score="1.000"/>
          <exon-intron don_prob="0.822" acc_prob="0.979" e_score="1.000"/>
          <exon-intron don_prob="0.986" acc_prob="0.987" e_score="1.000"/>
          <exon-intron don_prob="0.939" acc_prob="0.976" e_score="1.000"/>
          <exon-intron don_prob="0.982" acc_prob="0.993" e_score="1.000"/>
          <exon-intron don_prob="0.961" acc_prob="0.999" e_score="1.000"/>
          <exon-intron don_prob="0.873" acc_prob="0.993" e_score="1.000"/>
          <exon-intron don_prob="0.957" acc_prob="0.992" e_score="1.000"/>
          <exon-intron don_prob="0.470" acc_prob="0.434" e_score="1.000"/>
          <exon-intron don_prob="0.990" acc_prob="0.956" e_score="1.000"/>
          <exon-intron don_prob="0.408" acc_prob="0.976" e_score="1.000"/>
          <exon-intron don_prob="0.000" acc_prob="0.000" e_score="0.995"/>
          <exon-only e_score="0.933"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.994">
            <gDNA_exon_boundary e_start="74443" e_stop="74619" e_length="177"/>
          </exon>
          <intron i_serial="1" don_prob="0.998" acc_prob="0.915">
            <gDNA_intron_boundary i_start="74620" i_stop="75586" i_length="967"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="75587" e_stop="75624" e_length="38"/>
          </exon>
          <intron i_serial="2" don_prob="1.000" acc_prob="0.964">
            <gDNA_intron_boundary i_start="75625" i_stop="75858" i_length="234"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="75859" e_stop="75881" e_length="23"/>
          </exon>
          <intron i_serial="3" don_prob="0.991" acc_prob="0.908">
            <gDNA_intron_boundary i_start="75882" i_stop="76746" i_length="865"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="76747" e_stop="76853" e_length="107"/>
          </exon>
          <intron i_serial="4" don_prob="0.864" acc_prob="0.996">
            <gDNA_intron_boundary i_start="76854" i_stop="76939" i_length="86"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="76940" e_stop="76991" e_length="52"/>
          </exon>
          <intron i_serial="5" don_prob="0.983" acc_prob="0.938">
            <gDNA_intron_boundary i_start="76992" i_stop="77077" i_length="86"/>
          </intron>
          <exon e_serial="6" e_score="1.000">
            <gDNA_exon_boundary e_start="77078" e_stop="77162" e_length="85"/>
          </exon>
          <intron i_serial="6" don_prob="0.882" acc_prob="1.000">
            <gDNA_intron_boundary i_start="77163" i_stop="77855" i_length="693"/>
          </intron>
          <exon e_serial="7" e_score="1.000">
            <gDNA_exon_boundary e_start="77856" e_stop="77946" e_length="91"/>
          </exon>
          <intron i_serial="7" don_prob="1.000" acc_prob="0.768">
            <gDNA_intron_boundary i_start="77947" i_stop="78745" i_length="799"/>
          </intron>
          <exon e_serial="8" e_score="1.000">
            <gDNA_exon_boundary e_start="78746" e_stop="78784" e_length="39"/>
          </exon>
          <intron i_serial="8" don_prob="0.822" acc_prob="0.979">
            <gDNA_intron_boundary i_start="78785" i_stop="78981" i_length="197"/>
          </intron>
          <exon e_serial="9" e_score="1.000">
            <gDNA_exon_boundary e_start="78982" e_stop="79049" e_length="68"/>
          </exon>
          <intron i_serial="9" don_prob="0.986" acc_prob="0.987">
            <gDNA_intron_boundary i_start="79050" i_stop="79142" i_length="93"/>
          </intron>
          <exon e_serial="10" e_score="1.000">
            <gDNA_exon_boundary e_start="79143" e_stop="79205" e_length="63"/>
          </exon>
          <intron i_serial="10" don_prob="0.939" acc_prob="0.976">
            <gDNA_intron_boundary i_start="79206" i_stop="79310" i_length="105"/>
          </intron>
          <exon e_serial="11" e_score="1.000">
            <gDNA_exon_boundary e_start="79311" e_stop="79366" e_length="56"/>
          </exon>
          <intron i_serial="11" don_prob="0.982" acc_prob="0.993">
            <gDNA_intron_boundary i_start="79367" i_stop="79446" i_length="80"/>
          </intron>
          <exon e_serial="12" e_score="1.000">
            <gDNA_exon_boundary e_start="79447" e_stop="79520" e_length="74"/>
          </exon>
          <intron i_serial="12" don_prob="0.961" acc_prob="0.999">
            <gDNA_intron_boundary i_start="79521" i_stop="79652" i_length="132"/>
          </intron>
          <exon e_serial="13" e_score="1.000">
            <gDNA_exon_boundary e_start="79653" e_stop="79928" e_length="276"/>
          </exon>
          <intron i_serial="13" don_prob="0.873" acc_prob="0.993">
            <gDNA_intron_boundary i_start="79929" i_stop="80026" i_length="98"/>
          </intron>
          <exon e_serial="14" e_score="1.000">
            <gDNA_exon_boundary e_start="80027" e_stop="80107" e_length="81"/>
          </exon>
          <intron i_serial="14" don_prob="0.957" acc_prob="0.992">
            <gDNA_intron_boundary i_start="80108" i_stop="80177" i_length="70"/>
          </intron>
          <exon e_serial="15" e_score="1.000">
            <gDNA_exon_boundary e_start="80178" e_stop="80269" e_length="92"/>
          </exon>
          <intron i_serial="15" don_prob="0.470" acc_prob="0.434">
            <gDNA_intron_boundary i_start="80270" i_stop="80407" i_length="138"/>
          </intron>
          <exon e_serial="16" e_score="1.000">
            <gDNA_exon_boundary e_start="80408" e_stop="80423" e_length="16"/>
          </exon>
          <intron i_serial="16" don_prob="0.990" acc_prob="0.956">
            <gDNA_intron_boundary i_start="80424" i_stop="80532" i_length="109"/>
          </intron>
          <exon e_serial="17" e_score="1.000">
            <gDNA_exon_boundary e_start="80533" e_stop="80643" e_length="111"/>
          </exon>
          <intron i_serial="17" don_prob="0.408" acc_prob="0.976">
            <gDNA_intron_boundary i_start="80644" i_stop="80735" i_length="92"/>
          </intron>
          <exon e_serial="18" e_score="0.995">
            <gDNA_exon_boundary e_start="80736" e_stop="81119" e_length="384"/>
          </exon>
          <intron i_serial="18" don_prob="0.000" acc_prob="0.000">
            <gDNA_intron_boundary i_start="81120" i_stop="81494" i_length="375"/>
          </intron>
          <exon e_serial="19" e_score="0.933">
            <gDNA_exon_boundary e_start="81495" e_stop="81509" e_length="15"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="74443" stop="74619"/>
              <exon start="75587" stop="75624"/>
              <exon start="75859" stop="75881"/>
              <exon start="76747" stop="76853"/>
              <exon start="76940" stop="76991"/>
              <exon start="77078" stop="77162"/>
              <exon start="77856" stop="77946"/>
              <exon start="78746" stop="78784"/>
              <exon start="78982" stop="79049"/>
              <exon start="79143" stop="79205"/>
              <exon start="79311" stop="79366"/>
              <exon start="79447" stop="79520"/>
              <exon start="79653" stop="79928"/>
              <exon start="80027" stop="80107"/>
              <exon start="80178" stop="80269"/>
              <exon start="80408" stop="80423"/>
              <exon start="80533" stop="80643"/>
              <exon start="80736" stop="81119"/>
              <exon start="81495" stop="81509"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E745146" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="74515" stop="74619"/>
              <exon start="75587" stop="75624"/>
              <exon start="75859" stop="75881"/>
              <exon start="76747" stop="76853"/>
              <exon start="76940" stop="76991"/>
              <exon start="77078" stop="77162"/>
              <exon start="77856" stop="77946"/>
              <exon start="78746" stop="78784"/>
              <exon start="78982" stop="79049"/>
              <exon start="79143" stop="79205"/>
              <exon start="79311" stop="79366"/>
              <exon start="79447" stop="79512"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E548022" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="79336" stop="79366"/>
              <exon start="79447" stop="79520"/>
              <exon start="79653" stop="79928"/>
              <exon start="80027" stop="80107"/>
              <exon start="80178" stop="80201"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E323877" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="15" AGS_serial="4" gDNA_strand="+"/>
          <translation>
            <gDNA_template>TGTTGTTTTCTCTGTGCTGTGTAGAGTGGTGAAGTAGAGAGCCCAAGGGTGAGTATGGGAGCTTTTTCAAATGAAGAACTTAGTTTCTCTTCCAATTTCGACTTCGCTTCCTCTCAGGATCTCAGATTCTCTAAGCAAATCCATGACAACGTTCACGGCAACATCTACATCGACCCG : CTCTACTTGAAGTTCATTGACACAGAACAATTTCAAAG : GCTTCGTGATCTTAAACAACTAG : GTGTGACACACATGGTCTATCCAGGAGCAGTGCATTCTAGATTTGAGCATTCCCTTGGAGTGTATTGGCTTGCCAATGAAGCTGTCCATAAGCTTAAAACCCACCAA : GGTATGGAGCTTGGAATTGATCACTTTGATATACAAACAGTGAAACTTGCAG : GTCTTCTACATGATATTGGACATGGACCTTTTAGCCACTTGTTTGAACGCGAGTTTCTTCCTCAAGTTTGCAATGGATTGGACTG : GTCTCATGAGCAAATGTCTGTGGACATGATTGATCACATTGTTGATGAGCGTCGTATTGATATTGATTCTGGAACCATTAAAAGGGTCAAG : GAAATGATACTTGCTAGTTCCAAGTTTACGTTGACAAAA : AGCTCAAGGGAGAAGCAGTTCTTATATGATATTGTGGCTAATGGTCGAAATGGAGTCGATGTTGACAA : GTTTGATTACATTGTCCGAGATAGCCGTGCGTGTGCAGTAGGATGCAATTTTCAATTTGAGAG : GTTGATGGAAACTATGAGAGTATTGGGAGATGAGATATGTTATCGAGCCAAAGATT : ATTTAACCATCCACAAGTTATTTGCCACACGAGCTGATCTACACAGAACTGTTTATACTCACGCTAAAGTGAAG : GCAATAGAGCTTATGATTGTAGATGCACTAGTGAAAGCAAATGATTATCTACACATATCATCACATATAGAGCATCCTTCTCAATACTGGAAGGTCGGCATGGTCTTTTTGTTAGCTTCAACCTCCTTAATTCATGGAACCATGAAAATAATTTCTCTGTGTATGTGGAAGTAGTTAGATGACACCATTTTAAAAACCATCGAGACTGCTCCAGACCCGGAACTGAAGGAATCTAGGGATTTGATCCTTCGTGTCCGAAGGAGAGATTTGTACCAG : TTCTGTAATGAGTATGCTGTCCCAAGAGACAAAATAGAGCATTTCAAGGATGTCACGGCACATGATATTGTCTGTTCGCAG : AAAAGTAGCAGTGAGACACTTAATGAAGAGGATGTTGCTGTGACCAATGTCAGGATAGATCTGACACGCGGGAGGCATAATCCGCTTGAAAG : TATCCATTTTTTCAAG : GATTATGAAAGTGAGGAGAAGTTCTCTATACCTGATGATCGCATCAGCCACTTGCTGCCATCATCATATCAAGATATGATTGTGAGAGTCTACTCCAAAAAGCCCCACCTG : GTGGAAGCTATTTCTGATGCATTTGAAAATTTCCAGTTAAAGACTTATGGAATAAAAGCACAGGTTCATGCAACACCTGAGAAGAAAAAACGCCGTGTATGATATTTCCCCAGTCATCACTACAAAATCCACAGTAGATATATGTGATTATAGTATATCTCAAGCAACATATTACAGTCCATTTGTACAGAAGTCTTTAAATGACACGTGAAAGGCCTCTCAAGAGTTATACTAGAGTTTTTGTAGAAAGTTGCTACCATTTACTGGATATGATAATATCCTCCGAGTACTCTCAACAATTTCTTGTATCCTAGCATTACTCGAAAAATGGATTTCTTGGTATAACCGACTTCTGAATATTACAGAAGCTGATGCTTTTATAAT : AAAAAAAAAAACAAA</gDNA_template>
            <first_frame> C  C  F  L  C  A  V  *  S  G  E  V  E  S  P  R  V  S  M  G  A  F  S  N  E  E  L  S  F  S  S  N  F  D  F  A  S  S  Q  D  L  R  F  S  K  Q  I  H  D  N  V  H  G  N  I  Y  I  D  P  :  L  Y  L  K  F  I  D  T  E  Q  F  Q  R :   L  R  D  L  K  Q  L   : G  V  T  H  M  V  Y  P  G  A  V  H  S  R  F  E  H  S  L  G  V  Y  W  L  A  N  E  A  V  H  K  L  K  T  H  Q  :  G  M  E  L  G  I  D  H  F  D  I  Q  T  V  K  L  A   : G  L  L  H  D  I  G  H  G  P  F  S  H  L  F  E  R  E  F  L  P  Q  V  C  N  G  L  D  W :   S  H  E  Q  M  S  V  D  M  I  D  H  I  V  D  E  R  R  I  D  I  D  S  G  T  I  K  R  V  K  :  E  M  I  L  A  S  S  K  F  T  L  T  K  :  S  S  R  E  K  Q  F  L  Y  D  I  V  A  N  G  R  N  G  V  D  V  D  K :   F  D  Y  I  V  R  D  S  R  A  C  A  V  G  C  N  F  Q  F  E  R :   L  M  E  T  M  R  V  L  G  D  E  I  C  Y  R  A  K  D   : Y  L  T  I  H  K  L  F  A  T  R  A  D  L  H  R  T  V  Y  T  H  A  K  V  K  :  A  I  E  L  M  I  V  D  A  L  V  K  A  N  D  Y  L  H  I  S  S  H  I  E  H  P  S  Q  Y  W  K  V  G  M  V  F  L  L  A  S  T  S  L  I  H  G  T  M  K  I  I  S  L  C  M  W  K  *  L  D  D  T  I  L  K  T  I  E  T  A  P  D  P  E  L  K  E  S  R  D  L  I  L  R  V  R  R  R  D  L  Y  Q  :  F  C  N  E  Y  A  V  P  R  D  K  I  E  H  F  K  D  V  T  A  H  D  I  V  C  S  Q  :  K  S  S  S  E  T  L  N  E  E  D  V  A  V  T  N  V  R  I  D  L  T  R  G  R  H  N  P  L  E  S :   I  H  F  F  K  :  D  Y  E  S  E  E  K  F  S  I  P  D  D  R  I  S  H  L  L  P  S  S  Y  Q  D  M  I  V  R  V  Y  S  K  K  P  H  L  :  V  E  A  I  S  D  A  F  E  N  F  Q  L  K  T  Y  G  I  K  A  Q  V  H  A  T  P  E  K  K  K  R  R  V  *  Y  F  P  S  H  H  Y  K  I  H  S  R  Y  M  *  L  *  Y  I  S  S  N  I  L  Q  S  I  C  T  E  V  F  K  *  H  V  K  G  L  S  R  V  I  L  E  F  L  *  K  V  A  T  I  Y  W  I  *  *  Y  P  P  S  T  L  N  N  F  L  Y  P  S  I  T  R  K  M  D  F  L  V  *  P  T  S  E  Y  Y  R  S  *  C  F  Y  N  :  K  K  K  N  K </first_frame>
            <second_frame>  V  V  F  S  V  L  C  R  V  V  K  *  R  A  Q  G  *  V  W  E  L  F  Q  M  K  N  L  V  S  L  P  I  S  T  S  L  P  L  R  I  S  D  S  L  S  K  S  M  T  T  F  T  A  T  S  T  S  T  R :   S  T  *  S  S  L  T  Q  N  N  F  K   : G  F  V  I  L  N  N  *  :  V  *  H  T  W  S  I  Q  E  Q  C  I  L  D  L  S  I  P  L  E  C  I  G  L  P  M  K  L  S  I  S  L  K  P  T  K :   V  W  S  L  E  L  I  T  L  I  Y  K  Q  *  N  L  Q  :  V  F  Y  M  I  L  D  M  D  L  L  A  T  C  L  N  A  S  F  F  L  K  F  A  M  D  W  T   : G  L  M  S  K  C  L  W  T  *  L  I  T  L  L  M  S  V  V  L  I  L  I  L  E  P  L  K  G  S  R :   K  *  Y  L  L  V  P  S  L  R  *  Q  K :   A  Q  G  R  S  S  S  Y  M  I  L  W  L  M  V  E  M  E  S  M  L  T   : S  L  I  T  L  S  E  I  A  V  R  V  Q  *  D  A  I  F  N  L  R   : G  *  W  K  L  *  E  Y  W  E  M  R  Y  V  I  E  P  K  I  :  I  *  P  S  T  S  Y  L  P  H  E  L  I  Y  T  E  L  F  I  L  T  L  K  *  R :   Q  *  S  L  *  L  *  M  H  *  *  K  Q  M  I  I  Y  T  Y  H  H  I  *  S  I  L  L  N  T  G  R  S  A  W  S  F  C  *  L  Q  P  P  *  F  M  E  P  *  K  *  F  L  C  V  C  G  S  S  *  M  T  P  F  *  K  P  S  R  L  L  Q  T  R  N  *  R  N  L  G  I  *  S  F  V  S  E  G  E  I  C  T  S :   S  V  M  S  M  L  S  Q  E  T  K  *  S  I  S  R  M  S  R  H  M  I  L  S  V  R  R :   K  V  A  V  R  H  L  M  K  R  M  L  L  *  P  M  S  G  *  I  *  H  A  G  G  I  I  R  L  K   : V  S  I  F  S  R :   I  M  K  V  R  R  S  S  L  Y  L  M  I  A  S  A  T  C  C  H  H  H  I  K  I  *  L  *  E  S  T  P  K  S  P  T  W :   W  K  L  F  L  M  H  L  K  I  S  S  *  R  L  M  E  *  K  H  R  F  M  Q  H  L  R  R  K  N  A  V  Y  D  I  S  P  V  I  T  T  K  S  T  V  D  I  C  D  Y  S  I  S  Q  A  T  Y  Y  S  P  F  V  Q  K  S  L  N  D  T  *  K  A  S  Q  E  L  Y  *  S  F  C  R  K  L  L  P  F  T  G  Y  D  N  I  L  R  V  L  S  T  I  S  C  I  L  A  L  L  E  K  W  I  S  W  Y  N  R  L  L  N  I  T  E  A  D  A  F  I  I :   K  K  K  T   </second_frame>
            <third_frame>   L  F  S  L  C  C  V  E  W  *  S  R  E  P  K  G  E  Y  G  S  F  F  K  *  R  T  *  F  L  F  Q  F  R  L  R  F  L  S  G  S  Q  I  L  *  A  N  P  *  Q  R  S  R  Q  H  L  H  R  P   : A  L  L  E  V  H  *  H  R  T  I  S  K  :  A  S  *  S  *  T  T  R :   C  D  T  H  G  L  S  R  S  S  A  F  *  I  *  A  F  P  W  S  V  L  A  C  Q  *  S  C  P  *  A  *  N  P  P   : R  Y  G  A  W  N  *  S  L  *  Y  T  N  S  E  T  C  R :   S  S  T  *  Y  W  T  W  T  F  *  P  L  V  *  T  R  V  S  S  S  S  L  Q  W  I  G  L  :  V  S  *  A  N  V  C  G  H  D  *  S  H  C  *  *  A  S  Y  *  Y  *  F  W  N  H  *  K  G  Q   : G  N  D  T  C  *  F  Q  V  Y  V  D  K   : K  L  K  G  E  A  V  L  I  *  Y  C  G  *  W  S  K  W  S  R  C  *  Q  :  V  *  L  H  C  P  R  *  P  C  V  C  S  R  M  Q  F  S  I  *  E  :  V  D  G  N  Y  E  S  I  G  R  *  D  M  L  S  S  Q  R  L :   F  N  H  P  Q  V  I  C  H  T  S  *  S  T  Q  N  C  L  Y  S  R  *  S  E   : G  N  R  A  Y  D  C  R  C  T  S  E  S  K  *  L  S  T  H  I  I  T  Y  R  A  S  F  S  I  L  E  G  R  H  G  L  F  V  S  F  N  L  L  N  S  W  N  H  E  N  N  F  S  V  Y  V  E  V  V  R  *  H  H  F  K  N  H  R  D  C  S  R  P  G  T  E  G  I  *  G  F  D  P  S  C  P  K  E  R  F  V  P   : V  L  *  *  V  C  C  P  K  R  Q  N  R  A  F  Q  G  C  H  G  T  *  Y  C  L  F  A   : E  K  *  Q  *  D  T  *  *  R  G  C  C  C  D  Q  C  Q  D  R  S  D  T  R  E  A  *  S  A  *  K  :  Y  P  F  F  Q   : G  L  *  K  *  G  E  V  L  Y  T  *  *  S  H  Q  P  L  A  A  I  I  I  S  R  Y  D  C  E  S  L  L  Q  K  A  P  P   : G  G  S  Y  F  *  C  I  *  K  F  P  V  K  D  L  W  N  K  S  T  G  S  C  N  T  *  E  E  K  T  P  C  M  I  F  P  Q  S  S  L  Q  N  P  Q  *  I  Y  V  I  I  V  Y  L  K  Q  H  I  T  V  H  L  Y  R  S  L  *  M  T  R  E  R  P  L  K  S  Y  T  R  V  F  V  E  S  C  Y  H  L  L  D  M  I  I  S  S  E  Y  S  Q  Q  F  L  V  S  *  H  Y  S  K  N  G  F  L  G  I  T  D  F  *  I  L  Q  K  L  M  L  L  *   : *  K  K  K  Q  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02HBa0236E02.1" strand="+"/>
                <serials PGL_serial="15" AGS_serial="4" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="74467" stop="74619"/>
                    <exon start="75587" stop="75624"/>
                    <exon start="75859" stop="75881"/>
                    <exon start="76747" stop="76853"/>
                    <exon start="76940" stop="76991"/>
                    <exon start="77078" stop="77162"/>
                    <exon start="77856" stop="77946"/>
                    <exon start="78746" stop="78784"/>
                    <exon start="78982" stop="79049"/>
                    <exon start="79143" stop="79205"/>
                    <exon start="79311" stop="79366"/>
                    <exon start="79447" stop="79520"/>
                    <exon start="79653" stop="79826"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>1020</number_coding_nucleotides>
                  <number_encoded_amino_acids>340</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>SGEVESPRVSMGAFSNEELSFSSNFDFASSQDLRFSKQIHDNVHGNIYIDPLYLKFIDTEQFQRLRDLKQLGVTHMVYPGAVHSRFEHSLGVYWLANEAVHKLKTHQGMELGIDHFDIQTVKLAGLLHDIGHGPFSHLFEREFLPQVCNGLDWSHEQMSVDMIDHIVDERRIDIDSGTIKRVKEMILASSKFTLTKSSREKQFLYDIVANGRNGVDVDKFDYIVRDSRACAVGCNFQFERLMETMRVLGDEICYRAKDYLTIHKLFATRADLHRTVYTHAKVKAIELMIVDALVKANDYLHISSHIEHPSQYWKVGMVFLLASTSLIHGTMKIISLCMWK*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C02HBa0236E02.1" strand="+"/>
                <serials PGL_serial="15" AGS_serial="4" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="79827" stop="79928"/>
                    <exon start="80027" stop="80107"/>
                    <exon start="80178" stop="80269"/>
                    <exon start="80408" stop="80423"/>
                    <exon start="80533" stop="80643"/>
                    <exon start="80736" stop="80837"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>501</number_coding_nucleotides>
                  <number_encoded_amino_acids>167</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>LDDTILKTIETAPDPELKESRDLILRVRRRDLYQFCNEYAVPRDKIEHFKDVTAHDIVCSQKSSSETLNEEDVAVTNVRIDLTRGRHNPLESIHFFKDYESEEKFSIPDDRISHLLPSSYQDMIVRVYSKKPHLVEAISDAFENFQLKTYGIKAQVHATPEKKKRRV*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="16" PGL_strand="-" PGL_start="85810" PGL_stop="82042"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="85810" e_stop="85435"/>
            <exon e_start="85118" e_stop="84828"/>
            <exon e_start="84718" e_stop="84519"/>
            <exon e_start="83898" e_stop="83630"/>
            <exon e_start="83244" e_stop="83102"/>
            <exon e_start="82576" e_stop="82505"/>
            <exon e_start="82402" e_stop="82042"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="1.000" acc_prob="0.969" e_score="1.000"/>
          <exon-intron don_prob="0.997" acc_prob="0.990" e_score="1.000"/>
          <exon-intron don_prob="0.998" acc_prob="0.879" e_score="1.000"/>
          <exon-intron don_prob="0.971" acc_prob="1.000" e_score="1.000"/>
          <exon-intron don_prob="0.993" acc_prob="0.991" e_score="1.000"/>
          <exon-intron don_prob="0.987" acc_prob="0.968" e_score="1.000"/>
          <exon-only e_score="0.970"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="85810" e_stop="85435" e_length="376"/>
          </exon>
          <intron i_serial="1" don_prob="1.000" acc_prob="0.969">
            <gDNA_intron_boundary i_start="85434" i_stop="85119" i_length="316"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="85118" e_stop="84828" e_length="291"/>
          </exon>
          <intron i_serial="2" don_prob="0.997" acc_prob="0.990">
            <gDNA_intron_boundary i_start="84827" i_stop="84719" i_length="109"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="84718" e_stop="84519" e_length="200"/>
          </exon>
          <intron i_serial="3" don_prob="0.998" acc_prob="0.879">
            <gDNA_intron_boundary i_start="84518" i_stop="83899" i_length="620"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="83898" e_stop="83630" e_length="269"/>
          </exon>
          <intron i_serial="4" don_prob="0.971" acc_prob="1.000">
            <gDNA_intron_boundary i_start="83629" i_stop="83245" i_length="385"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="83244" e_stop="83102" e_length="143"/>
          </exon>
          <intron i_serial="5" don_prob="0.993" acc_prob="0.991">
            <gDNA_intron_boundary i_start="83101" i_stop="82577" i_length="525"/>
          </intron>
          <exon e_serial="6" e_score="1.000">
            <gDNA_exon_boundary e_start="82576" e_stop="82505" e_length="72"/>
          </exon>
          <intron i_serial="6" don_prob="0.987" acc_prob="0.968">
            <gDNA_intron_boundary i_start="82504" i_stop="82403" i_length="102"/>
          </intron>
          <exon e_serial="7" e_score="0.970">
            <gDNA_exon_boundary e_start="82402" e_stop="82042" e_length="361"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="85810" stop="85435"/>
              <exon start="85118" stop="84931"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E412941" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="85810" stop="85435"/>
              <exon start="85118" stop="85054"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E471424" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="85797" stop="85435"/>
              <exon start="85118" stop="84925"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E318321" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="85724" stop="85435"/>
              <exon start="85118" stop="84863"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E288511" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="85708" stop="85435"/>
              <exon start="85118" stop="84867"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E335873" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="85696" stop="85435"/>
              <exon start="85118" stop="84846"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E725499" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="85676" stop="85435"/>
              <exon start="85118" stop="84828"/>
              <exon start="84718" stop="84615"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E320309" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="85676" stop="85435"/>
              <exon start="85118" stop="84828"/>
              <exon start="84718" stop="84694"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E366821" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="85675" stop="85435"/>
              <exon start="85118" stop="84828"/>
              <exon start="84718" stop="84523"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E731269" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="85669" stop="85435"/>
              <exon start="85118" stop="84828"/>
              <exon start="84718" stop="84530"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E347481" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="85669" stop="85435"/>
              <exon start="85118" stop="84828"/>
              <exon start="84718" stop="84677"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E339835" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="85666" stop="85435"/>
              <exon start="85118" stop="85008"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E472747" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="85664" stop="85435"/>
              <exon start="85118" stop="84828"/>
              <exon start="84718" stop="84530"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E342959" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="85664" stop="85435"/>
              <exon start="85118" stop="84828"/>
              <exon start="84718" stop="84696"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E366126" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="85654" stop="85435"/>
              <exon start="85118" stop="84914"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E725405" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="85653" stop="85435"/>
              <exon start="85118" stop="84877"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E279300" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="85651" stop="85435"/>
              <exon start="85118" stop="84828"/>
              <exon start="84718" stop="84637"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E728790" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="85579" stop="85435"/>
              <exon start="85118" stop="84828"/>
              <exon start="84718" stop="84519"/>
              <exon start="83898" stop="83691"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E739588" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="85578" stop="85435"/>
              <exon start="85118" stop="84828"/>
              <exon start="84718" stop="84519"/>
              <exon start="83898" stop="83699"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E739084" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="85565" stop="85435"/>
              <exon start="85118" stop="84828"/>
              <exon start="84718" stop="84519"/>
              <exon start="83898" stop="83797"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E459138" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="84957" stop="84828"/>
              <exon start="84718" stop="84519"/>
              <exon start="83898" stop="83700"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E202299" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="83778" stop="83630"/>
              <exon start="83244" stop="83102"/>
              <exon start="82576" stop="82505"/>
              <exon start="82402" stop="82298"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E287750" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="83153" stop="83102"/>
              <exon start="82576" stop="82505"/>
              <exon start="82402" stop="82042"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E412942" strand="-"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="16" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>GTTGACCTGAGTCTCTGGTATTCCAATTTTATCCTTATCTCTTTCTACTCTCCTCCTGTCCATTACACCTATTTTCAATCTCAATTTCTTCATTAATAACAGTTGCATTTTGTCAATTTTTTTCCCTCCAAACCCCAAATGTCCTCTAGAATTGCTTGACTGTGTAAACAAACTAGTTGTAAATTCATCAATGGCAGCATCTGTTTCCTGCCACTATTTTTCTTCCCCATTAACAACTTCCACCAAATCCATCAAGCCTAAGCTCAATTACAGCCATTTCGCACCTGCTCTTAGTAAAGGATCGATCCGCCATTTTGTTCCACTATGTTCTTCACAACGCTCGCTTCCTTCTGAATCGGAATGCCAAGACAAAGAG : AAAGATTGGTTTTTGTCATTGAAGAAATGTGCAGCTGCAGTAGCATTGTCGGTTAGTTTGATTAGTGGACTACCTGGATCGCAATGGTTGGGTCCTGCTCATGCGAGCACCCCAGCATTGCCAGATGTCTCTGTATTGATCTCAGGGCCACCAATTAAGGATCCAGGGGCGTTATTGAGGTATGCATTGCCTATAGACAACAAGGCGATAAGAGAAGTCCAAAAACCCCTTGAAGATATTACTGATAGTCTCAAGATTGCTGGTGTCAAGGCGCTTGACTCTGTTGAAAGA : AATACAAGACAAGCATCTCGAGCTCTCAAGGAAGGGAAAACCTTGATTATTTCAGGAGTAGCTAAGTCAAAGACTGACCACGCTATTGAATTGCTAAACAAACTAGAAGCTGGGTTAGGTGAGCTTCAACAAATTGTTGAAGACAGGACTCGAGATGCTGTTGCACCTAAACAGAAGGAATTGCTTAACTATGTTGGAGG : CTGAGATCTTCCTGGGGCATTCGATTTCTGCAGTGTTGAAGAGGATATGGTGGATGGATTCCCATATGAAGTACCTGAAGAATATCAAAATATGCCTTTACTGAAGGGAAGAGCAACTGTGGATATGAAGGTCAAAGTCAAAGACAATCCCAACCTGGAGGAATGCGTATTTCGTATTGTTCTAGATGGATATAATGCTCCAGTTACTGCTGGAAATTTTATAGACTTGGTCGAGAGGCATTTCTATGATGGCATGGATATTCAAAGAG : CGGATGGATTTGTGGTACAAACAGGAGATCCTGAAGGTCCAGCTGAAGGTTTTATTGACCCCAGTACAGAGAAAACCCGGACAGTACCTCTAGAGATTATGGTGGTTGGTGAAAAAGCACCATTCTACGGAGAAACTTTGGAA : GATCTTGGTCTATACAAGGCTCAAACAAGACTACCTTTCAATGCTTTTGGAACAATGGCCATGGCTAGAGAA : GAATTTGAGAATAACTCTGCCTCAAGTCAGGTGTTTTGGTTGTTGAAAGAAAGTGAACTGACTCCTAGCAACGCCAATATATTGGATGGTCGATATGCTGTGTTTGGTTATGTGACAGAAAATGAGGACTTTCTGGCAGATCTGAAGGTGGGAGATGTGATAGAATCAATACAAGTTGTATCTGGCCTCGATAATCTTGTGAATCCAAGCTACAAGATTGCTGGTTAGAGATGTCGTTTAAGTGAGGAATTATCGGAATTAAGACCTACCTGCATTGAGTTGTTCACGAAACTCTCTGAAGAGTATAATCATTATTTTCATCATATATTCAACAATTTCAGTTTCTTGCTTTTGAAATATC</gDNA_template>
            <first_frame> V  D  L  S  L  W  Y  S  N  F  I  L  I  S  F  Y  S  P  P  V  H  Y  T  Y  F  Q  S  Q  F  L  H  *  *  Q  L  H  F  V  N  F  F  P  S  K  P  Q  M  S  S  R  I  A  *  L  C  K  Q  T  S  C  K  F  I  N  G  S  I  C  F  L  P  L  F  F  F  P  I  N  N  F  H  Q  I  H  Q  A  *  A  Q  L  Q  P  F  R  T  C  S  *  *  R  I  D  P  P  F  C  S  T  M  F  F  T  T  L  A  S  F  *  I  G  M  P  R  Q  R   : E  R  L  V  F  V  I  E  E  M  C  S  C  S  S  I  V  G  *  F  D  *  W  T  T  W  I  A  M  V  G  S  C  S  C  E  H  P  S  I  A  R  C  L  C  I  D  L  R  A  T  N  *  G  S  R  G  V  I  E  V  C  I  A  Y  R  Q  Q  G  D  K  R  S  P  K  T  P  *  R  Y  Y  *  *  S  Q  D  C  W  C  Q  G  A  *  L  C  *  K   : K  Y  K  T  S  I  S  S  S  Q  G  R  E  N  L  D  Y  F  R  S  S  *  V  K  D  *  P  R  Y  *  I  A  K  Q  T  R  S  W  V  R  *  A  S  T  N  C  *  R  Q  D  S  R  C  C  C  T  *  T  E  G  I  A  *  L  C  W  R  :  L  R  S  S  W  G  I  R  F  L  Q  C  *  R  G  Y  G  G  W  I  P  I  *  S  T  *  R  I  S  K  Y  A  F  T  E  G  K  S  N  C  G  Y  E  G  Q  S  Q  R  Q  S  Q  P  G  G  M  R  I  S  Y  C  S  R  W  I  *  C  S  S  Y  C  W  K  F  Y  R  L  G  R  E  A  F  L  *  W  H  G  Y  S  K  S :   G  W  I  C  G  T  N  R  R  S  *  R  S  S  *  R  F  Y  *  P  Q  Y  R  E  N  P  D  S  T  S  R  D  Y  G  G  W  *  K  S  T  I  L  R  R  N  F  G   : R  S  W  S  I  Q  G  S  N  K  T  T  F  Q  C  F  W  N  N  G  H  G  *  R   : R  I  *  E  *  L  C  L  K  S  G  V  L  V  V  E  R  K  *  T  D  S  *  Q  R  Q  Y  I  G  W  S  I  C  C  V  W  L  C  D  R  K  *  G  L  S  G  R  S  E  G  G  R  C  D  R  I  N  T  S  C  I  W  P  R  *  S  C  E  S  K  L  Q  D  C  W  L  E  M  S  F  K  *  G  I  I  G  I  K  T  Y  L  H  *  V  V  H  E  T  L  *  R  V  *  S  L  F  S  S  Y  I  Q  Q  F  Q  F  L  A  F  E  I   </first_frame>
            <second_frame>  L  T  *  V  S  G  I  P  I  L  S  L  S  L  S  T  L  L  L  S  I  T  P  I  F  N  L  N  F  F  I  N  N  S  C  I  L  S  I  F  F  P  P  N  P  K  C  P  L  E  L  L  D  C  V  N  K  L  V  V  N  S  S  M  A  A  S  V  S  C  H  Y  F  S  S  P  L  T  T  S  T  K  S  I  K  P  K  L  N  Y  S  H  F  A  P  A  L  S  K  G  S  I  R  H  F  V  P  L  C  S  S  Q  R  S  L  P  S  E  S  E  C  Q  D  K  E  :  K  D  W  F  L  S  L  K  K  C  A  A  A  V  A  L  S  V  S  L  I  S  G  L  P  G  S  Q  W  L  G  P  A  H  A  S  T  P  A  L  P  D  V  S  V  L  I  S  G  P  P  I  K  D  P  G  A  L  L  R  Y  A  L  P  I  D  N  K  A  I  R  E  V  Q  K  P  L  E  D  I  T  D  S  L  K  I  A  G  V  K  A  L  D  S  V  E  R  :  N  T  R  Q  A  S  R  A  L  K  E  G  K  T  L  I  I  S  G  V  A  K  S  K  T  D  H  A  I  E  L  L  N  K  L  E  A  G  L  G  E  L  Q  Q  I  V  E  D  R  T  R  D  A  V  A  P  K  Q  K  E  L  L  N  Y  V  G  G :   *  D  L  P  G  A  F  D  F  C  S  V  E  E  D  M  V  D  G  F  P  Y  E  V  P  E  E  Y  Q  N  M  P  L  L  K  G  R  A  T  V  D  M  K  V  K  V  K  D  N  P  N  L  E  E  C  V  F  R  I  V  L  D  G  Y  N  A  P  V  T  A  G  N  F  I  D  L  V  E  R  H  F  Y  D  G  M  D  I  Q  R   : A  D  G  F  V  V  Q  T  G  D  P  E  G  P  A  E  G  F  I  D  P  S  T  E  K  T  R  T  V  P  L  E  I  M  V  V  G  E  K  A  P  F  Y  G  E  T  L  E  :  D  L  G  L  Y  K  A  Q  T  R  L  P  F  N  A  F  G  T  M  A  M  A  R  E  :  E  F  E  N  N  S  A  S  S  Q  V  F  W  L  L  K  E  S  E  L  T  P  S  N  A  N  I  L  D  G  R  Y  A  V  F  G  Y  V  T  E  N  E  D  F  L  A  D  L  K  V  G  D  V  I  E  S  I  Q  V  V  S  G  L  D  N  L  V  N  P  S  Y  K  I  A  G  *  R  C  R  L  S  E  E  L  S  E  L  R  P  T  C  I  E  L  F  T  K  L  S  E  E  Y  N  H  Y  F  H  H  I  F  N  N  F  S  F  L  L  L  K  Y  </second_frame>
            <third_frame>   *  P  E  S  L  V  F  Q  F  Y  P  Y  L  F  L  L  S  S  C  P  L  H  L  F  S  I  S  I  S  S  L  I  T  V  A  F  C  Q  F  F  S  L  Q  T  P  N  V  L  *  N  C  L  T  V  *  T  N  *  L  *  I  H  Q  W  Q  H  L  F  P  A  T  I  F  L  P  H  *  Q  L  P  P  N  P  S  S  L  S  S  I  T  A  I  S  H  L  L  L  V  K  D  R  S  A  I  L  F  H  Y  V  L  H  N  A  R  F  L  L  N  R  N  A  K  T  K  R :   K  I  G  F  C  H  *  R  N  V  Q  L  Q  *  H  C  R  L  V  *  L  V  D  Y  L  D  R  N  G  W  V  L  L  M  R  A  P  Q  H  C  Q  M  S  L  Y  *  S  Q  G  H  Q  L  R  I  Q  G  R  Y  *  G  M  H  C  L  *  T  T  R  R  *  E  K  S  K  N  P  L  K  I  L  L  I  V  S  R  L  L  V  S  R  R  L  T  L  L  K  E :   I  Q  D  K  H  L  E  L  S  R  K  G  K  P  *  L  F  Q  E  *  L  S  Q  R  L  T  T  L  L  N  C  *  T  N  *  K  L  G  *  V  S  F  N  K  L  L  K  T  G  L  E  M  L  L  H  L  N  R  R  N  C  L  T  M  L  E   : A  E  I  F  L  G  H  S  I  S  A  V  L  K  R  I  W  W  M  D  S  H  M  K  Y  L  K  N  I  K  I  C  L  Y  *  R  E  E  Q  L  W  I  *  R  S  K  S  K  T  I  P  T  W  R  N  A  Y  F  V  L  F  *  M  D  I  M  L  Q  L  L  L  E  I  L  *  T  W  S  R  G  I  S  M  M  A  W  I  F  K  E  :  R  M  D  L  W  Y  K  Q  E  I  L  K  V  Q  L  K  V  L  L  T  P  V  Q  R  K  P  G  Q  Y  L  *  R  L  W  W  L  V  K  K  H  H  S  T  E  K  L  W  K :   I  L  V  Y  T  R  L  K  Q  D  Y  L  S  M  L  L  E  Q  W  P  W  L  E  K :   N  L  R  I  T  L  P  Q  V  R  C  F  G  C  *  K  K  V  N  *  L  L  A  T  P  I  Y  W  M  V  D  M  L  C  L  V  M  *  Q  K  M  R  T  F  W  Q  I  *  R  W  E  M  *  *  N  Q  Y  K  L  Y  L  A  S  I  I  L  *  I  Q  A  T  R  L  L  V  R  D  V  V  *  V  R  N  Y  R  N  *  D  L  P  A  L  S  C  S  R  N  S  L  K  S  I  I  I  I  F  I  I  Y  S  T  I  S  V  S  C  F  *  N  I </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02HBa0236E02.1" strand="-"/>
                <serials PGL_serial="16" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="85800" stop="85435"/>
                    <exon start="85118" stop="84828"/>
                    <exon start="84718" stop="84519"/>
                    <exon start="83898" stop="83895"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>858</number_coding_nucleotides>
                  <number_encoded_amino_acids>286</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>VSGIPILSLSLSTLLLSITPIFNLNFFINNSCILSIFFPPNPKCPLELLDCVNKLVVNSSMAASVSCHYFSSPLTTSTKSIKPKLNYSHFAPALSKGSIRHFVPLCSSQRSLPSESECQDKEKDWFLSLKKCAAAVALSVSLISGLPGSQWLGPAHASTPALPDVSVLISGPPIKDPGALLRYALPIDNKAIREVQKPLEDITDSLKIAGVKALDSVERNTRQASRALKEGKTLIISGVAKSKTDHAIELLNKLEAGLGELQQIVEDRTRDAVAPKQKELLNYVGG*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C02HBa0236E02.1" strand="-"/>
                <serials PGL_serial="16" AGS_serial="1" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="83894" stop="83630"/>
                    <exon start="83244" stop="83102"/>
                    <exon start="82576" stop="82505"/>
                    <exon start="82402" stop="82175"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>705</number_coding_nucleotides>
                  <number_encoded_amino_acids>235</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>DLPGAFDFCSVEEDMVDGFPYEVPEEYQNMPLLKGRATVDMKVKVKDNPNLEECVFRIVLDGYNAPVTAGNFIDLVERHFYDGMDIQRADGFVVQTGDPEGPAEGFIDPSTEKTRTVPLEIMVVGEKAPFYGETLEDLGLYKAQTRLPFNAFGTMAMAREEFENNSASSQVFWLLKESELTPSNANILDGRYAVFGYVTENEDFLADLKVGDVIESIQVVSGLDNLVNPSYKIAG*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="2">
          <exon_coordinates>
            <exon e_start="85810" e_stop="85435"/>
            <exon e_start="85118" e_stop="84828"/>
            <exon e_start="84718" e_stop="84519"/>
            <exon e_start="83865" e_stop="83790"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="1.000" acc_prob="0.969" e_score="1.000"/>
          <exon-intron don_prob="0.997" acc_prob="0.990" e_score="1.000"/>
          <exon-intron don_prob="0.998" acc_prob="0.910" e_score="1.000"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="85810" e_stop="85435" e_length="376"/>
          </exon>
          <intron i_serial="1" don_prob="1.000" acc_prob="0.969">
            <gDNA_intron_boundary i_start="85434" i_stop="85119" i_length="316"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="85118" e_stop="84828" e_length="291"/>
          </exon>
          <intron i_serial="2" don_prob="0.997" acc_prob="0.990">
            <gDNA_intron_boundary i_start="84827" i_stop="84719" i_length="109"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="84718" e_stop="84519" e_length="200"/>
          </exon>
          <intron i_serial="3" don_prob="0.998" acc_prob="0.910">
            <gDNA_intron_boundary i_start="84518" i_stop="83866" i_length="653"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="83865" e_stop="83790" e_length="76"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="85810" stop="85435"/>
              <exon start="85118" stop="84931"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E412941" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="85810" stop="85435"/>
              <exon start="85118" stop="85054"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E471424" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="85797" stop="85435"/>
              <exon start="85118" stop="84925"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E318321" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="85731" stop="85435"/>
              <exon start="85118" stop="84828"/>
              <exon start="84718" stop="84519"/>
              <exon start="83865" stop="83794"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E707272" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="85724" stop="85435"/>
              <exon start="85118" stop="84863"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E288511" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="85708" stop="85435"/>
              <exon start="85118" stop="84867"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E335873" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="85696" stop="85435"/>
              <exon start="85118" stop="84846"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E725499" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="85676" stop="85435"/>
              <exon start="85118" stop="84828"/>
              <exon start="84718" stop="84615"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E320309" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="85676" stop="85435"/>
              <exon start="85118" stop="84828"/>
              <exon start="84718" stop="84694"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E366821" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="85675" stop="85435"/>
              <exon start="85118" stop="84828"/>
              <exon start="84718" stop="84523"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E731269" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="85672" stop="85435"/>
              <exon start="85118" stop="84828"/>
              <exon start="84718" stop="84519"/>
              <exon start="83865" stop="83790"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E736433" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="85669" stop="85435"/>
              <exon start="85118" stop="84828"/>
              <exon start="84718" stop="84530"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E347481" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="85669" stop="85435"/>
              <exon start="85118" stop="84828"/>
              <exon start="84718" stop="84677"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E339835" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="85666" stop="85435"/>
              <exon start="85118" stop="85008"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E472747" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="85664" stop="85435"/>
              <exon start="85118" stop="84828"/>
              <exon start="84718" stop="84530"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E342959" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="85664" stop="85435"/>
              <exon start="85118" stop="84828"/>
              <exon start="84718" stop="84696"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E366126" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="85654" stop="85435"/>
              <exon start="85118" stop="84914"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E725405" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="85653" stop="85435"/>
              <exon start="85118" stop="84877"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E279300" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="85651" stop="85435"/>
              <exon start="85118" stop="84828"/>
              <exon start="84718" stop="84637"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E728790" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="16" AGS_serial="2" gDNA_strand="-"/>
          <translation>
            <gDNA_template>GTTGACCTGAGTCTCTGGTATTCCAATTTTATCCTTATCTCTTTCTACTCTCCTCCTGTCCATTACACCTATTTTCAATCTCAATTTCTTCATTAATAACAGTTGCATTTTGTCAATTTTTTTCCCTCCAAACCCCAAATGTCCTCTAGAATTGCTTGACTGTGTAAACAAACTAGTTGTAAATTCATCAATGGCAGCATCTGTTTCCTGCCACTATTTTTCTTCCCCATTAACAACTTCCACCAAATCCATCAAGCCTAAGCTCAATTACAGCCATTTCGCACCTGCTCTTAGTAAAGGATCGATCCGCCATTTTGTTCCACTATGTTCTTCACAACGCTCGCTTCCTTCTGAATCGGAATGCCAAGACAAAGAG : AAAGATTGGTTTTTGTCATTGAAGAAATGTGCAGCTGCAGTAGCATTGTCGGTTAGTTTGATTAGTGGACTACCTGGATCGCAATGGTTGGGTCCTGCTCATGCGAGCACCCCAGCATTGCCAGATGTCTCTGTATTGATCTCAGGGCCACCAATTAAGGATCCAGGGGCGTTATTGAGGTATGCATTGCCTATAGACAACAAGGCGATAAGAGAAGTCCAAAAACCCCTTGAAGATATTACTGATAGTCTCAAGATTGCTGGTGTCAAGGCGCTTGACTCTGTTGAAAGA : AATACAAGACAAGCATCTCGAGCTCTCAAGGAAGGGAAAACCTTGATTATTTCAGGAGTAGCTAAGTCAAAGACTGACCACGCTATTGAATTGCTAAACAAACTAGAAGCTGGGTTAGGTGAGCTTCAACAAATTGTTGAAGACAGGACTCGAGATGCTGTTGCACCTAAACAGAAGGAATTGCTTAACTATGTTGGAGG : TGTTGAAGAGGATATGGTGGATGGATTCCCATATGAAGTACCTGAAGAATATCAAAATATGCCTTTACTGAAGGGA</gDNA_template>
            <first_frame> V  D  L  S  L  W  Y  S  N  F  I  L  I  S  F  Y  S  P  P  V  H  Y  T  Y  F  Q  S  Q  F  L  H  *  *  Q  L  H  F  V  N  F  F  P  S  K  P  Q  M  S  S  R  I  A  *  L  C  K  Q  T  S  C  K  F  I  N  G  S  I  C  F  L  P  L  F  F  F  P  I  N  N  F  H  Q  I  H  Q  A  *  A  Q  L  Q  P  F  R  T  C  S  *  *  R  I  D  P  P  F  C  S  T  M  F  F  T  T  L  A  S  F  *  I  G  M  P  R  Q  R   : E  R  L  V  F  V  I  E  E  M  C  S  C  S  S  I  V  G  *  F  D  *  W  T  T  W  I  A  M  V  G  S  C  S  C  E  H  P  S  I  A  R  C  L  C  I  D  L  R  A  T  N  *  G  S  R  G  V  I  E  V  C  I  A  Y  R  Q  Q  G  D  K  R  S  P  K  T  P  *  R  Y  Y  *  *  S  Q  D  C  W  C  Q  G  A  *  L  C  *  K   : K  Y  K  T  S  I  S  S  S  Q  G  R  E  N  L  D  Y  F  R  S  S  *  V  K  D  *  P  R  Y  *  I  A  K  Q  T  R  S  W  V  R  *  A  S  T  N  C  *  R  Q  D  S  R  C  C  C  T  *  T  E  G  I  A  *  L  C  W  R  :  C  *  R  G  Y  G  G  W  I  P  I  *  S  T  *  R  I  S  K  Y  A  F  T  E  G  </first_frame>
            <second_frame>  L  T  *  V  S  G  I  P  I  L  S  L  S  L  S  T  L  L  L  S  I  T  P  I  F  N  L  N  F  F  I  N  N  S  C  I  L  S  I  F  F  P  P  N  P  K  C  P  L  E  L  L  D  C  V  N  K  L  V  V  N  S  S  M  A  A  S  V  S  C  H  Y  F  S  S  P  L  T  T  S  T  K  S  I  K  P  K  L  N  Y  S  H  F  A  P  A  L  S  K  G  S  I  R  H  F  V  P  L  C  S  S  Q  R  S  L  P  S  E  S  E  C  Q  D  K  E  :  K  D  W  F  L  S  L  K  K  C  A  A  A  V  A  L  S  V  S  L  I  S  G  L  P  G  S  Q  W  L  G  P  A  H  A  S  T  P  A  L  P  D  V  S  V  L  I  S  G  P  P  I  K  D  P  G  A  L  L  R  Y  A  L  P  I  D  N  K  A  I  R  E  V  Q  K  P  L  E  D  I  T  D  S  L  K  I  A  G  V  K  A  L  D  S  V  E  R  :  N  T  R  Q  A  S  R  A  L  K  E  G  K  T  L  I  I  S  G  V  A  K  S  K  T  D  H  A  I  E  L  L  N  K  L  E  A  G  L  G  E  L  Q  Q  I  V  E  D  R  T  R  D  A  V  A  P  K  Q  K  E  L  L  N  Y  V  G  G :   V  E  E  D  M  V  D  G  F  P  Y  E  V  P  E  E  Y  Q  N  M  P  L  L  K  G </second_frame>
            <third_frame>   *  P  E  S  L  V  F  Q  F  Y  P  Y  L  F  L  L  S  S  C  P  L  H  L  F  S  I  S  I  S  S  L  I  T  V  A  F  C  Q  F  F  S  L  Q  T  P  N  V  L  *  N  C  L  T  V  *  T  N  *  L  *  I  H  Q  W  Q  H  L  F  P  A  T  I  F  L  P  H  *  Q  L  P  P  N  P  S  S  L  S  S  I  T  A  I  S  H  L  L  L  V  K  D  R  S  A  I  L  F  H  Y  V  L  H  N  A  R  F  L  L  N  R  N  A  K  T  K  R :   K  I  G  F  C  H  *  R  N  V  Q  L  Q  *  H  C  R  L  V  *  L  V  D  Y  L  D  R  N  G  W  V  L  L  M  R  A  P  Q  H  C  Q  M  S  L  Y  *  S  Q  G  H  Q  L  R  I  Q  G  R  Y  *  G  M  H  C  L  *  T  T  R  R  *  E  K  S  K  N  P  L  K  I  L  L  I  V  S  R  L  L  V  S  R  R  L  T  L  L  K  E :   I  Q  D  K  H  L  E  L  S  R  K  G  K  P  *  L  F  Q  E  *  L  S  Q  R  L  T  T  L  L  N  C  *  T  N  *  K  L  G  *  V  S  F  N  K  L  L  K  T  G  L  E  M  L  L  H  L  N  R  R  N  C  L  T  M  L  E   : V  L  K  R  I  W  W  M  D  S  H  M  K  Y  L  K  N  I  K  I  C  L  Y  *  R   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02HBa0236E02.1" strand="-"/>
                <serials PGL_serial="16" AGS_serial="2" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="85800" stop="85435"/>
                    <exon start="85118" stop="84828"/>
                    <exon start="84718" stop="84519"/>
                    <exon start="83865" stop="83790"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>933</number_coding_nucleotides>
                  <number_encoded_amino_acids>311</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>VSGIPILSLSLSTLLLSITPIFNLNFFINNSCILSIFFPPNPKCPLELLDCVNKLVVNSSMAASVSCHYFSSPLTTSTKSIKPKLNYSHFAPALSKGSIRHFVPLCSSQRSLPSESECQDKEKDWFLSLKKCAAAVALSVSLISGLPGSQWLGPAHASTPALPDVSVLISGPPIKDPGALLRYALPIDNKAIREVQKPLEDITDSLKIAGVKALDSVERNTRQASRALKEGKTLIISGVAKSKTDHAIELLNKLEAGLGELQQIVEDRTRDAVAPKQKELLNYVGGVEEDMVDGFPYEVPEEYQNMPLLKG</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="17" PGL_strand="+" PGL_start="83552" PGL_stop="84130"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="83552" e_stop="83744"/>
            <exon e_start="83825" e_stop="84130"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.794" acc_prob="0.917" e_score="1.000"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="83552" e_stop="83744" e_length="193"/>
          </exon>
          <intron i_serial="1" don_prob="0.794" acc_prob="0.917">
            <gDNA_intron_boundary i_start="83745" i_stop="83824" i_length="80"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="83825" e_stop="84130" e_length="306"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="83552" stop="83744"/>
              <exon start="83825" stop="84130"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E243184" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="17" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>AACATTCCTTGTTTGATGCATAGACAGTTTTATTTGTTTCATTGATTCGCAAGAACAGAGCAAAAATCATAAGCTCACCTCTTTGAATATCCATGCCATCATAGAAATGCCTCTCGACCAAGTCTATAAAATTTCCAGCAGTAACTGGAGCATTATATCCATCTAGAACAATACGAAATACGCATTCCTCCAG : GTACTTCATATGGGAATCCATCCACCATATCCTCTTCAACACTGCAGAAATCGAATGCCCCAGGAAGATCTCAGCTGCAGTCAATGACAAGGGGTCTAAATGAGAAAGGCATAACTTTGGAAATTCACCATTTTTAAAAGTTTTCATCACTCTTCACTTTCTATTCATAGAATTGGTCCATAGTCAACAAAAAATCTTATTTTGGTATTCAAACTGGAATAAGTAGCCTACTTAAACATGCATCCGTCCAATGACACTTCTGTGCTTCTGTGGCATAAATTCTACCAAAGCAATTGCTTTGTGAAA</gDNA_template>
            <first_frame> N  I  P  C  L  M  H  R  Q  F  Y  L  F  H  *  F  A  R  T  E  Q  K  S  *  A  H  L  F  E  Y  P  C  H  H  R  N  A  S  R  P  S  L  *  N  F  Q  Q  *  L  E  H  Y  I  H  L  E  Q  Y  E  I  R  I  P  P   : G  T  S  Y  G  N  P  S  T  I  S  S  S  T  L  Q  K  S  N  A  P  G  R  S  Q  L  Q  S  M  T  R  G  L  N  E  K  G  I  T  L  E  I  H  H  F  *  K  F  S  S  L  F  T  F  Y  S  *  N  W  S  I  V  N  K  K  S  Y  F  G  I  Q  T  G  I  S  S  L  L  K  H  A  S  V  Q  *  H  F  C  A  S  V  A  *  I  L  P  K  Q  L  L  C  E  </first_frame>
            <second_frame>  T  F  L  V  *  C  I  D  S  F  I  C  F  I  D  S  Q  E  Q  S  K  N  H  K  L  T  S  L  N  I  H  A  I  I  E  M  P  L  D  Q  V  Y  K  I  S  S  S  N  W  S  I  I  S  I  *  N  N  T  K  Y  A  F  L  Q  :  V  L  H  M  G  I  H  P  P  Y  P  L  Q  H  C  R  N  R  M  P  Q  E  D  L  S  C  S  Q  *  Q  G  V  *  M  R  K  A  *  L  W  K  F  T  I  F  K  S  F  H  H  S  S  L  S  I  H  R  I  G  P  *  S  T  K  N  L  I  L  V  F  K  L  E  *  V  A  Y  L  N  M  H  P  S  N  D  T  S  V  L  L  W  H  K  F  Y  Q  S  N  C  F  V  K </second_frame>
            <third_frame>   H  S  L  F  D  A  *  T  V  L  F  V  S  L  I  R  K  N  R  A  K  I  I  S  S  P  L  *  I  S  M  P  S  *  K  C  L  S  T  K  S  I  K  F  P  A  V  T  G  A  L  Y  P  S  R  T  I  R  N  T  H  S  S  R :   Y  F  I  W  E  S  I  H  H  I  L  F  N  T  A  E  I  E  C  P  R  K  I  S  A  A  V  N  D  K  G  S  K  *  E  R  H  N  F  G  N  S  P  F  L  K  V  F  I  T  L  H  F  L  F  I  E  L  V  H  S  Q  Q  K  I  L  F  W  Y  S  N  W  N  K  *  P  T  *  T  C  I  R  P  M  T  L  L  C  F  C  G  I  N  S  T  K  A  I  A  L  *   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <none gDNA_id="C02HBa0236E02.1"/>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="18" PGL_strand="+" PGL_start="101612" PGL_stop="105189"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="101612" e_stop="102155"/>
            <exon e_start="102706" e_stop="102842"/>
            <exon e_start="103291" e_stop="103530"/>
            <exon e_start="104661" e_stop="105189"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="1.000" acc_prob="1.000" e_score="1.000"/>
          <exon-intron don_prob="0.999" acc_prob="0.784" e_score="1.000"/>
          <exon-intron don_prob="0.999" acc_prob="1.000" e_score="1.000"/>
          <exon-only e_score="0.996"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="101612" e_stop="102155" e_length="544"/>
          </exon>
          <intron i_serial="1" don_prob="1.000" acc_prob="1.000">
            <gDNA_intron_boundary i_start="102156" i_stop="102705" i_length="550"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="102706" e_stop="102842" e_length="137"/>
          </exon>
          <intron i_serial="2" don_prob="0.999" acc_prob="0.784">
            <gDNA_intron_boundary i_start="102843" i_stop="103290" i_length="448"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="103291" e_stop="103530" e_length="240"/>
          </exon>
          <intron i_serial="3" don_prob="0.999" acc_prob="1.000">
            <gDNA_intron_boundary i_start="103531" i_stop="104660" i_length="1130"/>
          </intron>
          <exon e_serial="4" e_score="0.996">
            <gDNA_exon_boundary e_start="104661" e_stop="105189" e_length="529"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="101612" stop="102155"/>
              <exon start="102706" stop="102842"/>
              <exon start="103291" stop="103530"/>
              <exon start="104661" stop="105189"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E745450" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="101630" stop="102155"/>
              <exon start="102706" stop="102842"/>
              <exon start="103291" stop="103499"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E703216" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="101630" stop="102155"/>
              <exon start="102706" stop="102842"/>
              <exon start="103291" stop="103490"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E700601" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="101630" stop="102155"/>
              <exon start="102706" stop="102838"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E321961" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="101630" stop="102097"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E318784" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="101631" stop="102155"/>
              <exon start="102706" stop="102807"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E207270" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="101631" stop="102155"/>
              <exon start="102706" stop="102730"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E308767" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="101631" stop="101953"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E297411" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="101632" stop="102155"/>
              <exon start="102706" stop="102842"/>
              <exon start="103291" stop="103495"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E727404" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="101633" stop="102129"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E566898" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="101636" stop="102155"/>
              <exon start="102706" stop="102838"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E573271" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="101636" stop="102155"/>
              <exon start="102706" stop="102838"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E578715" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="101636" stop="102155"/>
              <exon start="102706" stop="102807"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E453415" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="101637" stop="101863"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E365709" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="101639" stop="102046"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E267889" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="101641" stop="102098"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E207269" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="101642" stop="102155"/>
              <exon start="102706" stop="102838"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E327132" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="101653" stop="102100"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E365775" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="101663" stop="102155"/>
              <exon start="102706" stop="102725"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E438290" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="101668" stop="102155"/>
              <exon start="102706" stop="102837"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E453460" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="101679" stop="102026"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E724262" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="101683" stop="102155"/>
              <exon start="102706" stop="102842"/>
              <exon start="103291" stop="103498"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E735960" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="101684" stop="102155"/>
              <exon start="102706" stop="102842"/>
              <exon start="103291" stop="103505"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E736423" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="101685" stop="102155"/>
              <exon start="102706" stop="102842"/>
              <exon start="103291" stop="103505"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E726372" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="101710" stop="102153"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E570139" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="101777" stop="102155"/>
              <exon start="102706" stop="102724"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E697835" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="101803" stop="102155"/>
              <exon start="102706" stop="102829"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E267132" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="101926" stop="102155"/>
              <exon start="102706" stop="102842"/>
              <exon start="103291" stop="103397"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E319757" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="102012" stop="102155"/>
              <exon start="102706" stop="102842"/>
              <exon start="103291" stop="103530"/>
              <exon start="104661" stop="104985"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E705831" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="102121" stop="102155"/>
              <exon start="102706" stop="102842"/>
              <exon start="103291" stop="103530"/>
              <exon start="104661" stop="105181"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E699978" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="102706" stop="102842"/>
              <exon start="103291" stop="103530"/>
              <exon start="104661" stop="104765"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E305045" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="102708" stop="102842"/>
              <exon start="103291" stop="103530"/>
              <exon start="104661" stop="105111"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E704716" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="103479" stop="103530"/>
              <exon start="104661" stop="105120"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E441162" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="104661" stop="105156"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E712774" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="104703" stop="105175"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E712125" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="104708" stop="105184"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E219978" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="104710" stop="105156"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E416106" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="104711" stop="105175"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E586918" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="104814" stop="105175"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E353979" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="104824" stop="105184"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E219738" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="104848" stop="105189"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E224406" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="104932" stop="105179"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E308350" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="18" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>TAGTCGCAAAATAAACTTACAAAACAGCACATATATATAGAGACAAAATCACATAATACGCCCTCGCCGGAATCTTATTTTCACTGTCGCCGGCCGTTAAAACTTTTTTTTTCTAGTTCGGAGGTCAAATAATTAACCTCCGATCGGAAGAAGTAGTTATTCTAACTGCTTCTATTTAATCTGAAAACGGGAAAACCCCTGAGCTGGTTAAGGTGGATTTCGTGATGGGATTTTGTATTTGTCCTTTGGAAACTCCTGCTAGATTACTGTGGAGTACTAGTTTCTTCCGCCACAAGCTTATGCTCTTCTAAAACTTAGTCAACTCTCTTTTTTCATACACATCCCTGCTAAAAAAGAAGAACTCTGTGCTGGAGTTTTTGTTTTCCTTTTTCTGTTTCGCCGGAAACATATAAATAATCTTCTGTGTGTAAATAGGCGATTTTCCAGATAGTTGAAAATATGGGATCTGGGCATATATTTTTCGACCCGTCGTCGTGTCACGGCAACATGCTGTTCCTTGGGAGCGGAGATCCTGTTTTCCGAG : GACCAAGATCGACGATGATGAAGATGGAGGACTCCTCGAAGAGGCGACCCTTCTTTAGCTCGCCGGAGGATCTATATGACGAGGAATACTACGACGAGCAGTCACCGGAGAAGAAGCGCCGTCTCACTCCTGAGCAG : GTGCACTTGTTGGAGAAGAGCTTTGAGACAGAAAACAAGCTGGAGCCCGAGCGCAAAACCCAGCTGGCCAAAAAGCTGGGGCTGCAGCCCAGACAGGTGGCTGTATGGTTCCAAAACCGCCGTGCCCGGTGGAAGACCAAGCAGCTCGAGAGGGATTATGATCAGCTCAAATCCTCTTATGACTCCCTTCTCTCTGATTTTGACTCCGTTCGCAAAGATAACGATAAGCTCAAATCTGAG : GTTGTTTCATTGATGGAAAAGTTACAGGGGAAAGTGGTTGGAGGAGCAGGGGGAAATGAAAAATCTGACATCTTGGAGGTGGATGCTATGACGATCCTTCAAGTGAAGGTGAAGGCTGAGGACCGGTTGAGCAGTGGCAGTGGTGGGAGCGCGGTGGTAGATGAGCATAGTCCACAGCTGGTGGACAGTGGGGACTCATATTTTCACACTGATCATGAGGAGTATCCAGGGCCTGGAGGATGCAATGTTCCTCCACCCATGGATGGTTTACAATCGGAGGAAGATGATGGTAGTGATGATCATGGCAGTTGCCATGGCTACTTCTCTAACGTCTTTGTGGCAGAAGAGCAGCACCATGAACAAGGAGAAGAGCCTATTGGATGGTTCTGGTCTTAATTGAATTTTAGAATATTATATTACAGTTTTTCTTATCTACGCGCGCTTTGTATGATGAAATAAGTGTCGTAATTCCAACTTCTTATTTAAACATCTATTAATATGCTTTTGCAGCTTTTATTCTCTTGATTTA</gDNA_template>
            <first_frame> *  S  Q  N  K  L  T  K  Q  H  I  Y  I  E  T  K  S  H  N  T  P  S  P  E  S  Y  F  H  C  R  R  P  L  K  L  F  F  S  S  S  E  V  K  *  L  T  S  D  R  K  K  *  L  F  *  L  L  L  F  N  L  K  T  G  K  P  L  S  W  L  R  W  I  S  *  W  D  F  V  F  V  L  W  K  L  L  L  D  Y  C  G  V  L  V  S  S  A  T  S  L  C  S  S  K  T  *  S  T  L  F  F  H  T  H  P  C  *  K  R  R  T  L  C  W  S  F  C  F  P  F  S  V  S  P  E  T  Y  K  *  S  S  V  C  K  *  A  I  F  Q  I  V  E  N  M  G  S  G  H  I  F  F  D  P  S  S  C  H  G  N  M  L  F  L  G  S  G  D  P  V  F  R   : G  P  R  S  T  M  M  K  M  E  D  S  S  K  R  R  P  F  F  S  S  P  E  D  L  Y  D  E  E  Y  Y  D  E  Q  S  P  E  K  K  R  R  L  T  P  E  Q  :  V  H  L  L  E  K  S  F  E  T  E  N  K  L  E  P  E  R  K  T  Q  L  A  K  K  L  G  L  Q  P  R  Q  V  A  V  W  F  Q  N  R  R  A  R  W  K  T  K  Q  L  E  R  D  Y  D  Q  L  K  S  S  Y  D  S  L  L  S  D  F  D  S  V  R  K  D  N  D  K  L  K  S  E  :  V  V  S  L  M  E  K  L  Q  G  K  V  V  G  G  A  G  G  N  E  K  S  D  I  L  E  V  D  A  M  T  I  L  Q  V  K  V  K  A  E  D  R  L  S  S  G  S  G  G  S  A  V  V  D  E  H  S  P  Q  L  V  D  S  G  D  S  Y  F  H  T  D  H  E  E  Y  P  G  P  G  G  C  N  V  P  P  P  M  D  G  L  Q  S  E  E  D  D  G  S  D  D  H  G  S  C  H  G  Y  F  S  N  V  F  V  A  E  E  Q  H  H  E  Q  G  E  E  P  I  G  W  F  W  S  *  L  N  F  R  I  L  Y  Y  S  F  S  Y  L  R  A  L  C  M  M  K  *  V  S  *  F  Q  L  L  I  *  T  S  I  N  M  L  L  Q  L  L  F  S  *  F  </first_frame>
            <second_frame>  S  R  K  I  N  L  Q  N  S  T  Y  I  *  R  Q  N  H  I  I  R  P  R  R  N  L  I  F  T  V  A  G  R  *  N  F  F  F  L  V  R  R  S  N  N  *  P  P  I  G  R  S  S  Y  S  N  C  F  Y  L  I  *  K  R  E  N  P  *  A  G  *  G  G  F  R  D  G  I  L  Y  L  S  F  G  N  S  C  *  I  T  V  E  Y  *  F  L  P  P  Q  A  Y  A  L  L  K  L  S  Q  L  S  F  F  I  H  I  P  A  K  K  E  E  L  C  A  G  V  F  V  F  L  F  L  F  R  R  K  H  I  N  N  L  L  C  V  N  R  R  F  S  R  *  L  K  I  W  D  L  G  I  Y  F  S  T  R  R  R  V  T  A  T  C  C  S  L  G  A  E  I  L  F  S  E  :  D  Q  D  R  R  *  *  R  W  R  T  P  R  R  G  D  P  S  L  A  R  R  R  I  Y  M  T  R  N  T  T  T  S  S  H  R  R  R  S  A  V  S  L  L  S  R :   C  T  C  W  R  R  A  L  R  Q  K  T  S  W  S  P  S  A  K  P  S  W  P  K  S  W  G  C  S  P  D  R  W  L  Y  G  S  K  T  A  V  P  G  G  R  P  S  S  S  R  G  I  M  I  S  S  N  P  L  M  T  P  F  S  L  I  L  T  P  F  A  K  I  T  I  S  S  N  L  R :   L  F  H  *  W  K  S  Y  R  G  K  W  L  E  E  Q  G  E  M  K  N  L  T  S  W  R  W  M  L  *  R  S  F  K  *  R  *  R  L  R  T  G  *  A  V  A  V  V  G  A  R  W  *  M  S  I  V  H  S  W  W  T  V  G  T  H  I  F  T  L  I  M  R  S  I  Q  G  L  E  D  A  M  F  L  H  P  W  M  V  Y  N  R  R  K  M  M  V  V  M  I  M  A  V  A  M  A  T  S  L  T  S  L  W  Q  K  S  S  T  M  N  K  E  K  S  L  L  D  G  S  G  L  N  *  I  L  E  Y  Y  I  T  V  F  L  I  Y  A  R  F  V  *  *  N  K  C  R  N  S  N  F  L  F  K  H  L  L  I  C  F  C  S  F  Y  S  L  D  L </second_frame>
            <third_frame>   V  A  K  *  T  Y  K  T  A  H  I  Y  R  D  K  I  T  *  Y  A  L  A  G  I  L  F  S  L  S  P  A  V  K  T  F  F  F  *  F  G  G  Q  I  I  N  L  R  S  E  E  V  V  I  L  T  A  S  I  *  S  E  N  G  K  T  P  E  L  V  K  V  D  F  V  M  G  F  C  I  C  P  L  E  T  P  A  R  L  L  W  S  T  S  F  F  R  H  K  L  M  L  F  *  N  L  V  N  S  L  F  S  Y  T  S  L  L  K  K  K  N  S  V  L  E  F  L  F  S  F  F  C  F  A  G  N  I  *  I  I  F  C  V  *  I  G  D  F  P  D  S  *  K  Y  G  I  W  A  Y  I  F  R  P  V  V  V  S  R  Q  H  A  V  P  W  E  R  R  S  C  F  P  R :   T  K  I  D  D  D  E  D  G  G  L  L  E  E  A  T  L  L  *  L  A  G  G  S  I  *  R  G  I  L  R  R  A  V  T  G  E  E  A  P  S  H  S  *  A   : G  A  L  V  G  E  E  L  *  D  R  K  Q  A  G  A  R  A  Q  N  P  A  G  Q  K  A  G  A  A  A  Q  T  G  G  C  M  V  P  K  P  P  C  P  V  E  D  Q  A  A  R  E  G  L  *  S  A  Q  I  L  L  *  L  P  S  L  *  F  *  L  R  S  Q  R  *  R  *  A  Q  I  *   : G  C  F  I  D  G  K  V  T  G  E  S  G  W  R  S  R  G  K  *  K  I  *  H  L  G  G  G  C  Y  D  D  P  S  S  E  G  E  G  *  G  P  V  E  Q  W  Q  W  W  E  R  G  G  R  *  A  *  S  T  A  G  G  Q  W  G  L  I  F  S  H  *  S  *  G  V  S  R  A  W  R  M  Q  C  S  S  T  H  G  W  F  T  I  G  G  R  *  W  *  *  *  S  W  Q  L  P  W  L  L  L  *  R  L  C  G  R  R  A  A  P  *  T  R  R  R  A  Y  W  M  V  L  V  L  I  E  F  *  N  I  I  L  Q  F  F  L  S  T  R  A  L  Y  D  E  I  S  V  V  I  P  T  S  Y  L  N  I  Y  *  Y  A  F  A  A  F  I  L  L  I   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02HBa0236E02.1" strand="+"/>
                <serials PGL_serial="18" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="102047" stop="102155"/>
                    <exon start="102706" stop="102842"/>
                    <exon start="103291" stop="103530"/>
                    <exon start="104661" stop="105056"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>879</number_coding_nucleotides>
                  <number_encoded_amino_acids>293</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>AIFQIVENMGSGHIFFDPSSCHGNMLFLGSGDPVFRGPRSTMMKMEDSSKRRPFFSSPEDLYDEEYYDEQSPEKKRRLTPEQVHLLEKSFETENKLEPERKTQLAKKLGLQPRQVAVWFQNRRARWKTKQLERDYDQLKSSYDSLLSDFDSVRKDNDKLKSEVVSLMEKLQGKVVGGAGGNEKSDILEVDAMTILQVKVKAEDRLSSGSGGSAVVDEHSPQLVDSGDSYFHTDHEEYPGPGGCNVPPPMDGLQSEEDDGSDDHGSCHGYFSNVFVAEEQHHEQGEEPIGWFWS*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="2">
          <exon_coordinates>
            <exon e_start="101629" e_stop="102155"/>
            <exon e_start="102706" e_stop="102842"/>
            <exon e_start="104661" e_stop="105189"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="1.000" acc_prob="1.000" e_score="1.000"/>
          <exon-intron don_prob="0.999" acc_prob="1.000" e_score="1.000"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="101629" e_stop="102155" e_length="527"/>
          </exon>
          <intron i_serial="1" don_prob="1.000" acc_prob="1.000">
            <gDNA_intron_boundary i_start="102156" i_stop="102705" i_length="550"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="102706" e_stop="102842" e_length="137"/>
          </exon>
          <intron i_serial="2" don_prob="0.999" acc_prob="1.000">
            <gDNA_intron_boundary i_start="102843" i_stop="104660" i_length="1818"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="104661" e_stop="105189" e_length="529"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="101629" stop="102155"/>
              <exon start="102706" stop="102842"/>
              <exon start="104661" stop="104877"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E706629" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="101630" stop="102155"/>
              <exon start="102706" stop="102838"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E321961" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="101630" stop="102097"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E318784" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="101631" stop="102155"/>
              <exon start="102706" stop="102807"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E207270" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="101631" stop="102155"/>
              <exon start="102706" stop="102730"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E308767" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="101631" stop="101953"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E297411" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="101633" stop="102129"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E566898" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="101636" stop="102155"/>
              <exon start="102706" stop="102838"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E573271" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="101636" stop="102155"/>
              <exon start="102706" stop="102838"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E578715" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="101636" stop="102155"/>
              <exon start="102706" stop="102807"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E453415" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="101637" stop="101863"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E365709" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="101639" stop="102046"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E267889" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="101641" stop="102098"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E207269" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="101642" stop="102155"/>
              <exon start="102706" stop="102838"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E327132" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="101653" stop="102100"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E365775" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="101663" stop="102155"/>
              <exon start="102706" stop="102725"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E438290" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="101668" stop="102155"/>
              <exon start="102706" stop="102837"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E453460" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="101679" stop="102026"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E724262" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="101687" stop="102155"/>
              <exon start="102706" stop="102842"/>
              <exon start="104661" stop="104764"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E718572" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="101710" stop="102153"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E570139" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="101777" stop="102155"/>
              <exon start="102706" stop="102724"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E697835" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="101803" stop="102155"/>
              <exon start="102706" stop="102829"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E267132" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="104661" stop="105156"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E712774" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="104703" stop="105175"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E712125" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="104708" stop="105184"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E219978" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="104710" stop="105156"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E416106" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="104711" stop="105175"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E586918" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="104814" stop="105175"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E353979" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="104824" stop="105184"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E219738" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="104848" stop="105189"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E224406" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="104932" stop="105179"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E308350" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="18" AGS_serial="2" gDNA_strand="+"/>
          <translation>
            <gDNA_template>TACAAAACAGCACATATATATAGAGACAAAATCACATAATACGCCCTCGCCGGAATCTTATTTTCACTGTCGCCGGCCGTTAAAACTTTTTTTTTCTAGTTCGGAGGTCAAATAATTAACCTCCGATCGGAAGAAGTAGTTATTCTAACTGCTTCTATTTAATCTGAAAACGGGAAAACCCCTGAGCTGGTTAAGGTGGATTTCGTGATGGGATTTTGTATTTGTCCTTTGGAAACTCCTGCTAGATTACTGTGGAGTACTAGTTTCTTCCGCCACAAGCTTATGCTCTTCTAAAACTTAGTCAACTCTCTTTTTTCATACACATCCCTGCTAAAAAAGAAGAACTCTGTGCTGGAGTTTTTGTTTTCCTTTTTCTGTTTCGCCGGAAACATATAAATAATCTTCTGTGTGTAAATAGGCGATTTTCCAGATAGTTGAAAATATGGGATCTGGGCATATATTTTTCGACCCGTCGTCGTGTCACGGCAACATGCTGTTCCTTGGGAGCGGAGATCCTGTTTTCCGAG : GACCAAGATCGACGATGATGAAGATGGAGGACTCCTCGAAGAGGCGACCCTTCTTTAGCTCGCCGGAGGATCTATATGACGAGGAATACTACGACGAGCAGTCACCGGAGAAGAAGCGCCGTCTCACTCCTGAGCAG : GTTGTTTCATTGATGGAAAAGTTACAGGGGAAAGTGGTTGGAGGAGCAGGGGGAAATGAAAAATCTGACATCTTGGAGGTGGATGCTATGACGATCCTTCAAGTGAAGGTGAAGGCTGAGGACCGGTTGAGCAGTGGCAGTGGTGGGAGCGCGGTGGTAGATGAGCATAGTCCACAGCTGGTGGACAGTGGGGACTCATATTTTCACACTGATCATGAGGAGTATCCAGGGCCTGGAGGATGCAATGTTCCTCCACCCATGGATGGTTTACAATCGGAGGAAGATGATGGTAGTGATGATCATGGCAGTTGCCATGGCTACTTCTCTAACGTCTTTGTGGCAGAAGAGCAGCACCATGAACAAGGAGAAGAGCCTATTGGATGGTTCTGGTCTTAATTGAATTTTAGAATATTATATTACAGTTTTTCTTATCTACGCGCGCTTTGTATGATGAAATAAGTGTCGTAATTCCAACTTCTTATTTAAACATCTATTAATATGCTTTTGCAGCTTTTATTCTCTTGATTTA</gDNA_template>
            <first_frame> Y  K  T  A  H  I  Y  R  D  K  I  T  *  Y  A  L  A  G  I  L  F  S  L  S  P  A  V  K  T  F  F  F  *  F  G  G  Q  I  I  N  L  R  S  E  E  V  V  I  L  T  A  S  I  *  S  E  N  G  K  T  P  E  L  V  K  V  D  F  V  M  G  F  C  I  C  P  L  E  T  P  A  R  L  L  W  S  T  S  F  F  R  H  K  L  M  L  F  *  N  L  V  N  S  L  F  S  Y  T  S  L  L  K  K  K  N  S  V  L  E  F  L  F  S  F  F  C  F  A  G  N  I  *  I  I  F  C  V  *  I  G  D  F  P  D  S  *  K  Y  G  I  W  A  Y  I  F  R  P  V  V  V  S  R  Q  H  A  V  P  W  E  R  R  S  C  F  P  R :   T  K  I  D  D  D  E  D  G  G  L  L  E  E  A  T  L  L  *  L  A  G  G  S  I  *  R  G  I  L  R  R  A  V  T  G  E  E  A  P  S  H  S  *  A   : G  C  F  I  D  G  K  V  T  G  E  S  G  W  R  S  R  G  K  *  K  I  *  H  L  G  G  G  C  Y  D  D  P  S  S  E  G  E  G  *  G  P  V  E  Q  W  Q  W  W  E  R  G  G  R  *  A  *  S  T  A  G  G  Q  W  G  L  I  F  S  H  *  S  *  G  V  S  R  A  W  R  M  Q  C  S  S  T  H  G  W  F  T  I  G  G  R  *  W  *  *  *  S  W  Q  L  P  W  L  L  L  *  R  L  C  G  R  R  A  A  P  *  T  R  R  R  A  Y  W  M  V  L  V  L  I  E  F  *  N  I  I  L  Q  F  F  L  S  T  R  A  L  Y  D  E  I  S  V  V  I  P  T  S  Y  L  N  I  Y  *  Y  A  F  A  A  F  I  L  L  I   </first_frame>
            <second_frame>  T  K  Q  H  I  Y  I  E  T  K  S  H  N  T  P  S  P  E  S  Y  F  H  C  R  R  P  L  K  L  F  F  S  S  S  E  V  K  *  L  T  S  D  R  K  K  *  L  F  *  L  L  L  F  N  L  K  T  G  K  P  L  S  W  L  R  W  I  S  *  W  D  F  V  F  V  L  W  K  L  L  L  D  Y  C  G  V  L  V  S  S  A  T  S  L  C  S  S  K  T  *  S  T  L  F  F  H  T  H  P  C  *  K  R  R  T  L  C  W  S  F  C  F  P  F  S  V  S  P  E  T  Y  K  *  S  S  V  C  K  *  A  I  F  Q  I  V  E  N  M  G  S  G  H  I  F  F  D  P  S  S  C  H  G  N  M  L  F  L  G  S  G  D  P  V  F  R   : G  P  R  S  T  M  M  K  M  E  D  S  S  K  R  R  P  F  F  S  S  P  E  D  L  Y  D  E  E  Y  Y  D  E  Q  S  P  E  K  K  R  R  L  T  P  E  Q  :  V  V  S  L  M  E  K  L  Q  G  K  V  V  G  G  A  G  G  N  E  K  S  D  I  L  E  V  D  A  M  T  I  L  Q  V  K  V  K  A  E  D  R  L  S  S  G  S  G  G  S  A  V  V  D  E  H  S  P  Q  L  V  D  S  G  D  S  Y  F  H  T  D  H  E  E  Y  P  G  P  G  G  C  N  V  P  P  P  M  D  G  L  Q  S  E  E  D  D  G  S  D  D  H  G  S  C  H  G  Y  F  S  N  V  F  V  A  E  E  Q  H  H  E  Q  G  E  E  P  I  G  W  F  W  S  *  L  N  F  R  I  L  Y  Y  S  F  S  Y  L  R  A  L  C  M  M  K  *  V  S  *  F  Q  L  L  I  *  T  S  I  N  M  L  L  Q  L  L  F  S  *  F  </second_frame>
            <third_frame>   Q  N  S  T  Y  I  *  R  Q  N  H  I  I  R  P  R  R  N  L  I  F  T  V  A  G  R  *  N  F  F  F  L  V  R  R  S  N  N  *  P  P  I  G  R  S  S  Y  S  N  C  F  Y  L  I  *  K  R  E  N  P  *  A  G  *  G  G  F  R  D  G  I  L  Y  L  S  F  G  N  S  C  *  I  T  V  E  Y  *  F  L  P  P  Q  A  Y  A  L  L  K  L  S  Q  L  S  F  F  I  H  I  P  A  K  K  E  E  L  C  A  G  V  F  V  F  L  F  L  F  R  R  K  H  I  N  N  L  L  C  V  N  R  R  F  S  R  *  L  K  I  W  D  L  G  I  Y  F  S  T  R  R  R  V  T  A  T  C  C  S  L  G  A  E  I  L  F  S  E  :  D  Q  D  R  R  *  *  R  W  R  T  P  R  R  G  D  P  S  L  A  R  R  R  I  Y  M  T  R  N  T  T  T  S  S  H  R  R  R  S  A  V  S  L  L  S  R :   L  F  H  *  W  K  S  Y  R  G  K  W  L  E  E  Q  G  E  M  K  N  L  T  S  W  R  W  M  L  *  R  S  F  K  *  R  *  R  L  R  T  G  *  A  V  A  V  V  G  A  R  W  *  M  S  I  V  H  S  W  W  T  V  G  T  H  I  F  T  L  I  M  R  S  I  Q  G  L  E  D  A  M  F  L  H  P  W  M  V  Y  N  R  R  K  M  M  V  V  M  I  M  A  V  A  M  A  T  S  L  T  S  L  W  Q  K  S  S  T  M  N  K  E  K  S  L  L  D  G  S  G  L  N  *  I  L  E  Y  Y  I  T  V  F  L  I  Y  A  R  F  V  *  *  N  K  C  R  N  S  N  F  L  F  K  H  L  L  I  C  F  C  S  F  Y  S  L  D  L </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02HBa0236E02.1" strand="+"/>
                <serials PGL_serial="18" AGS_serial="2" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="102047" stop="102155"/>
                    <exon start="102706" stop="102842"/>
                    <exon start="104661" stop="105056"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>639</number_coding_nucleotides>
                  <number_encoded_amino_acids>213</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>AIFQIVENMGSGHIFFDPSSCHGNMLFLGSGDPVFRGPRSTMMKMEDSSKRRPFFSSPEDLYDEEYYDEQSPEKKRRLTPEQVVSLMEKLQGKVVGGAGGNEKSDILEVDAMTILQVKVKAEDRLSSGSGGSAVVDEHSPQLVDSGDSYFHTDHEEYPGPGGCNVPPPMDGLQSEEDDGSDDHGSCHGYFSNVFVAEEQHHEQGEEPIGWFWS*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="3">
          <exon_coordinates>
            <exon e_start="101630" e_stop="102155"/>
            <exon e_start="102706" e_stop="102903"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="1.000" acc_prob="1.000" e_score="1.000"/>
          <exon-only e_score="0.995"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="101630" e_stop="102155" e_length="526"/>
          </exon>
          <intron i_serial="1" don_prob="1.000" acc_prob="1.000">
            <gDNA_intron_boundary i_start="102156" i_stop="102705" i_length="550"/>
          </intron>
          <exon e_serial="2" e_score="0.995">
            <gDNA_exon_boundary e_start="102706" e_stop="102903" e_length="198"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="101630" stop="102155"/>
              <exon start="102706" stop="102838"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E321961" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="101630" stop="102097"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E318784" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="101631" stop="102155"/>
              <exon start="102706" stop="102903"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E333531" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="101631" stop="102155"/>
              <exon start="102706" stop="102807"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E207270" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="101631" stop="102155"/>
              <exon start="102706" stop="102730"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E308767" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="101631" stop="101953"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E297411" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="101633" stop="102129"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E566898" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="101636" stop="102155"/>
              <exon start="102706" stop="102838"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E573271" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="101636" stop="102155"/>
              <exon start="102706" stop="102838"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E578715" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="101636" stop="102155"/>
              <exon start="102706" stop="102807"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E453415" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="101637" stop="101863"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E365709" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="101639" stop="102046"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E267889" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="101641" stop="102098"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E207269" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="101642" stop="102155"/>
              <exon start="102706" stop="102838"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E327132" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="101653" stop="102100"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E365775" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="101663" stop="102155"/>
              <exon start="102706" stop="102725"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E438290" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="101668" stop="102155"/>
              <exon start="102706" stop="102837"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E453460" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="101679" stop="102026"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E724262" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="101710" stop="102153"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E570139" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="101777" stop="102155"/>
              <exon start="102706" stop="102724"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E697835" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="101786" stop="102155"/>
              <exon start="102706" stop="102853"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E569046" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="101803" stop="102155"/>
              <exon start="102706" stop="102829"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E267132" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="18" AGS_serial="3" gDNA_strand="+"/>
          <translation>
            <gDNA_template>ACAAAACAGCACATATATATAGAGACAAAATCACATAATACGCCCTCGCCGGAATCTTATTTTCACTGTCGCCGGCCGTTAAAACTTTTTTTTTCTAGTTCGGAGGTCAAATAATTAACCTCCGATCGGAAGAAGTAGTTATTCTAACTGCTTCTATTTAATCTGAAAACGGGAAAACCCCTGAGCTGGTTAAGGTGGATTTCGTGATGGGATTTTGTATTTGTCCTTTGGAAACTCCTGCTAGATTACTGTGGAGTACTAGTTTCTTCCGCCACAAGCTTATGCTCTTCTAAAACTTAGTCAACTCTCTTTTTTCATACACATCCCTGCTAAAAAAGAAGAACTCTGTGCTGGAGTTTTTGTTTTCCTTTTTCTGTTTCGCCGGAAACATATAAATAATCTTCTGTGTGTAAATAGGCGATTTTCCAGATAGTTGAAAATATGGGATCTGGGCATATATTTTTCGACCCGTCGTCGTGTCACGGCAACATGCTGTTCCTTGGGAGCGGAGATCCTGTTTTCCGAG : GACCAAGATCGACGATGATGAAGATGGAGGACTCCTCGAAGAGGCGACCCTTCTTTAGCTCGCCGGAGGATCTATATGACGAGGAATACTACGACGAGCAGTCACCGGAGAAGAAGCGCCGTCTCACTCCTGAGCAGGTTAGCATCCTGTTCCTCCTTTATCTACCCAAAAATATAAATTAAGTAAATGCGTTTTTTT</gDNA_template>
            <first_frame> T  K  Q  H  I  Y  I  E  T  K  S  H  N  T  P  S  P  E  S  Y  F  H  C  R  R  P  L  K  L  F  F  S  S  S  E  V  K  *  L  T  S  D  R  K  K  *  L  F  *  L  L  L  F  N  L  K  T  G  K  P  L  S  W  L  R  W  I  S  *  W  D  F  V  F  V  L  W  K  L  L  L  D  Y  C  G  V  L  V  S  S  A  T  S  L  C  S  S  K  T  *  S  T  L  F  F  H  T  H  P  C  *  K  R  R  T  L  C  W  S  F  C  F  P  F  S  V  S  P  E  T  Y  K  *  S  S  V  C  K  *  A  I  F  Q  I  V  E  N  M  G  S  G  H  I  F  F  D  P  S  S  C  H  G  N  M  L  F  L  G  S  G  D  P  V  F  R   : G  P  R  S  T  M  M  K  M  E  D  S  S  K  R  R  P  F  F  S  S  P  E  D  L  Y  D  E  E  Y  Y  D  E  Q  S  P  E  K  K  R  R  L  T  P  E  Q  V  S  I  L  F  L  L  Y  L  P  K  N  I  N  *  V  N  A  F  F  </first_frame>
            <second_frame>  Q  N  S  T  Y  I  *  R  Q  N  H  I  I  R  P  R  R  N  L  I  F  T  V  A  G  R  *  N  F  F  F  L  V  R  R  S  N  N  *  P  P  I  G  R  S  S  Y  S  N  C  F  Y  L  I  *  K  R  E  N  P  *  A  G  *  G  G  F  R  D  G  I  L  Y  L  S  F  G  N  S  C  *  I  T  V  E  Y  *  F  L  P  P  Q  A  Y  A  L  L  K  L  S  Q  L  S  F  F  I  H  I  P  A  K  K  E  E  L  C  A  G  V  F  V  F  L  F  L  F  R  R  K  H  I  N  N  L  L  C  V  N  R  R  F  S  R  *  L  K  I  W  D  L  G  I  Y  F  S  T  R  R  R  V  T  A  T  C  C  S  L  G  A  E  I  L  F  S  E  :  D  Q  D  R  R  *  *  R  W  R  T  P  R  R  G  D  P  S  L  A  R  R  R  I  Y  M  T  R  N  T  T  T  S  S  H  R  R  R  S  A  V  S  L  L  S  R  L  A  S  C  S  S  F  I  Y  P  K  I  *  I  K  *  M  R  F  F </second_frame>
            <third_frame>   K  T  A  H  I  Y  R  D  K  I  T  *  Y  A  L  A  G  I  L  F  S  L  S  P  A  V  K  T  F  F  F  *  F  G  G  Q  I  I  N  L  R  S  E  E  V  V  I  L  T  A  S  I  *  S  E  N  G  K  T  P  E  L  V  K  V  D  F  V  M  G  F  C  I  C  P  L  E  T  P  A  R  L  L  W  S  T  S  F  F  R  H  K  L  M  L  F  *  N  L  V  N  S  L  F  S  Y  T  S  L  L  K  K  K  N  S  V  L  E  F  L  F  S  F  F  C  F  A  G  N  I  *  I  I  F  C  V  *  I  G  D  F  P  D  S  *  K  Y  G  I  W  A  Y  I  F  R  P  V  V  V  S  R  Q  H  A  V  P  W  E  R  R  S  C  F  P  R :   T  K  I  D  D  D  E  D  G  G  L  L  E  E  A  T  L  L  *  L  A  G  G  S  I  *  R  G  I  L  R  R  A  V  T  G  E  E  A  P  S  H  S  *  A  G  *  H  P  V  P  P  L  S  T  Q  K  Y  K  L  S  K  C  V  F   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02HBa0236E02.1" strand="+"/>
                <serials PGL_serial="18" AGS_serial="3" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="102047" stop="102155"/>
                    <exon start="102706" stop="102887"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>288</number_coding_nucleotides>
                  <number_encoded_amino_acids>96</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>AIFQIVENMGSGHIFFDPSSCHGNMLFLGSGDPVFRGPRSTMMKMEDSSKRRPFFSSPEDLYDEEYYDEQSPEKKRRLTPEQVSILFLLYLPKNIN*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="4">
          <exon_coordinates>
            <exon e_start="102523" e_stop="102639"/>
            <exon e_start="102706" e_stop="102842"/>
            <exon e_start="103291" e_stop="103530"/>
            <exon e_start="104661" e_stop="105189"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.000" acc_prob="1.000" e_score="0.991"/>
          <exon-intron don_prob="0.999" acc_prob="0.784" e_score="1.000"/>
          <exon-intron don_prob="0.999" acc_prob="1.000" e_score="1.000"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.991">
            <gDNA_exon_boundary e_start="102523" e_stop="102639" e_length="117"/>
          </exon>
          <intron i_serial="1" don_prob="0.000" acc_prob="1.000">
            <gDNA_intron_boundary i_start="102640" i_stop="102705" i_length="66"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="102706" e_stop="102842" e_length="137"/>
          </exon>
          <intron i_serial="2" don_prob="0.999" acc_prob="0.784">
            <gDNA_intron_boundary i_start="102843" i_stop="103290" i_length="448"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="103291" e_stop="103530" e_length="240"/>
          </exon>
          <intron i_serial="3" don_prob="0.999" acc_prob="1.000">
            <gDNA_intron_boundary i_start="103531" i_stop="104660" i_length="1130"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="104661" e_stop="105189" e_length="529"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="102523" stop="102639"/>
              <exon start="102706" stop="102842"/>
              <exon start="103291" stop="103526"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E253438" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="102706" stop="102842"/>
              <exon start="103291" stop="103530"/>
              <exon start="104661" stop="104765"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E305045" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="102708" stop="102842"/>
              <exon start="103291" stop="103530"/>
              <exon start="104661" stop="105111"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E704716" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="103479" stop="103530"/>
              <exon start="104661" stop="105120"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E441162" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="104661" stop="105156"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E712774" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="104703" stop="105175"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E712125" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="104708" stop="105184"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E219978" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="104710" stop="105156"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E416106" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="104711" stop="105175"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E586918" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="104814" stop="105175"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E353979" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="104824" stop="105184"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E219738" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="104848" stop="105189"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E224406" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="104932" stop="105179"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E308350" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="18" AGS_serial="4" gDNA_strand="+"/>
          <translation>
            <gDNA_template>TATAAGTTGTTTCAGATAGATAGTTTTAAATTCAATTCACTTAGGGTATTGTTTTTATAGATTGATTATCTCTAGTACAGTAAAAATAATGATAAAATTGTAACAACCTTTTTGCAT : GACCAAGATCGACGATGATGAAGATGGAGGACTCCTCGAAGAGGCGACCCTTCTTTAGCTCGCCGGAGGATCTATATGACGAGGAATACTACGACGAGCAGTCACCGGAGAAGAAGCGCCGTCTCACTCCTGAGCAG : GTGCACTTGTTGGAGAAGAGCTTTGAGACAGAAAACAAGCTGGAGCCCGAGCGCAAAACCCAGCTGGCCAAAAAGCTGGGGCTGCAGCCCAGACAGGTGGCTGTATGGTTCCAAAACCGCCGTGCCCGGTGGAAGACCAAGCAGCTCGAGAGGGATTATGATCAGCTCAAATCCTCTTATGACTCCCTTCTCTCTGATTTTGACTCCGTTCGCAAAGATAACGATAAGCTCAAATCTGAG : GTTGTTTCATTGATGGAAAAGTTACAGGGGAAAGTGGTTGGAGGAGCAGGGGGAAATGAAAAATCTGACATCTTGGAGGTGGATGCTATGACGATCCTTCAAGTGAAGGTGAAGGCTGAGGACCGGTTGAGCAGTGGCAGTGGTGGGAGCGCGGTGGTAGATGAGCATAGTCCACAGCTGGTGGACAGTGGGGACTCATATTTTCACACTGATCATGAGGAGTATCCAGGGCCTGGAGGATGCAATGTTCCTCCACCCATGGATGGTTTACAATCGGAGGAAGATGATGGTAGTGATGATCATGGCAGTTGCCATGGCTACTTCTCTAACGTCTTTGTGGCAGAAGAGCAGCACCATGAACAAGGAGAAGAGCCTATTGGATGGTTCTGGTCTTAATTGAATTTTAGAATATTATATTACAGTTTTTCTTATCTACGCGCGCTTTGTATGATGAAATAAGTGTCGTAATTCCAACTTCTTATTTAAACATCTATTAATATGCTTTTGCAGCTTTTATTCTCTTGATTTA</gDNA_template>
            <first_frame> Y  K  L  F  Q  I  D  S  F  K  F  N  S  L  R  V  L  F  L  *  I  D  Y  L  *  Y  S  K  N  N  D  K  I  V  T  T  F  L  H  :  D  Q  D  R  R  *  *  R  W  R  T  P  R  R  G  D  P  S  L  A  R  R  R  I  Y  M  T  R  N  T  T  T  S  S  H  R  R  R  S  A  V  S  L  L  S  R :   C  T  C  W  R  R  A  L  R  Q  K  T  S  W  S  P  S  A  K  P  S  W  P  K  S  W  G  C  S  P  D  R  W  L  Y  G  S  K  T  A  V  P  G  G  R  P  S  S  S  R  G  I  M  I  S  S  N  P  L  M  T  P  F  S  L  I  L  T  P  F  A  K  I  T  I  S  S  N  L  R :   L  F  H  *  W  K  S  Y  R  G  K  W  L  E  E  Q  G  E  M  K  N  L  T  S  W  R  W  M  L  *  R  S  F  K  *  R  *  R  L  R  T  G  *  A  V  A  V  V  G  A  R  W  *  M  S  I  V  H  S  W  W  T  V  G  T  H  I  F  T  L  I  M  R  S  I  Q  G  L  E  D  A  M  F  L  H  P  W  M  V  Y  N  R  R  K  M  M  V  V  M  I  M  A  V  A  M  A  T  S  L  T  S  L  W  Q  K  S  S  T  M  N  K  E  K  S  L  L  D  G  S  G  L  N  *  I  L  E  Y  Y  I  T  V  F  L  I  Y  A  R  F  V  *  *  N  K  C  R  N  S  N  F  L  F  K  H  L  L  I  C  F  C  S  F  Y  S  L  D  L </first_frame>
            <second_frame>  I  S  C  F  R  *  I  V  L  N  S  I  H  L  G  Y  C  F  Y  R  L  I  I  S  S  T  V  K  I  M  I  K  L  *  Q  P  F  C  M :   T  K  I  D  D  D  E  D  G  G  L  L  E  E  A  T  L  L  *  L  A  G  G  S  I  *  R  G  I  L  R  R  A  V  T  G  E  E  A  P  S  H  S  *  A   : G  A  L  V  G  E  E  L  *  D  R  K  Q  A  G  A  R  A  Q  N  P  A  G  Q  K  A  G  A  A  A  Q  T  G  G  C  M  V  P  K  P  P  C  P  V  E  D  Q  A  A  R  E  G  L  *  S  A  Q  I  L  L  *  L  P  S  L  *  F  *  L  R  S  Q  R  *  R  *  A  Q  I  *   : G  C  F  I  D  G  K  V  T  G  E  S  G  W  R  S  R  G  K  *  K  I  *  H  L  G  G  G  C  Y  D  D  P  S  S  E  G  E  G  *  G  P  V  E  Q  W  Q  W  W  E  R  G  G  R  *  A  *  S  T  A  G  G  Q  W  G  L  I  F  S  H  *  S  *  G  V  S  R  A  W  R  M  Q  C  S  S  T  H  G  W  F  T  I  G  G  R  *  W  *  *  *  S  W  Q  L  P  W  L  L  L  *  R  L  C  G  R  R  A  A  P  *  T  R  R  R  A  Y  W  M  V  L  V  L  I  E  F  *  N  I  I  L  Q  F  F  L  S  T  R  A  L  Y  D  E  I  S  V  V  I  P  T  S  Y  L  N  I  Y  *  Y  A  F  A  A  F  I  L  L  I   </second_frame>
            <third_frame>   *  V  V  S  D  R  *  F  *  I  Q  F  T  *  G  I  V  F  I  D  *  L  S  L  V  Q  *  K  *  *  *  N  C  N  N  L  F  A   : *  P  R  S  T  M  M  K  M  E  D  S  S  K  R  R  P  F  F  S  S  P  E  D  L  Y  D  E  E  Y  Y  D  E  Q  S  P  E  K  K  R  R  L  T  P  E  Q  :  V  H  L  L  E  K  S  F  E  T  E  N  K  L  E  P  E  R  K  T  Q  L  A  K  K  L  G  L  Q  P  R  Q  V  A  V  W  F  Q  N  R  R  A  R  W  K  T  K  Q  L  E  R  D  Y  D  Q  L  K  S  S  Y  D  S  L  L  S  D  F  D  S  V  R  K  D  N  D  K  L  K  S  E  :  V  V  S  L  M  E  K  L  Q  G  K  V  V  G  G  A  G  G  N  E  K  S  D  I  L  E  V  D  A  M  T  I  L  Q  V  K  V  K  A  E  D  R  L  S  S  G  S  G  G  S  A  V  V  D  E  H  S  P  Q  L  V  D  S  G  D  S  Y  F  H  T  D  H  E  E  Y  P  G  P  G  G  C  N  V  P  P  P  M  D  G  L  Q  S  E  E  D  D  G  S  D  D  H  G  S  C  H  G  Y  F  S  N  V  F  V  A  E  E  Q  H  H  E  Q  G  E  E  P  I  G  W  F  W  S  *  L  N  F  R  I  L  Y  Y  S  F  S  Y  L  R  A  L  C  M  M  K  *  V  S  *  F  Q  L  L  I  *  T  S  I  N  M  L  L  Q  L  L  F  S  *  F  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02HBa0236E02.1" strand="+"/>
                <serials PGL_serial="18" AGS_serial="4" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="102708" stop="102842"/>
                    <exon start="103291" stop="103530"/>
                    <exon start="104661" stop="105056"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>768</number_coding_nucleotides>
                  <number_encoded_amino_acids>256</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>PRSTMMKMEDSSKRRPFFSSPEDLYDEEYYDEQSPEKKRRLTPEQVHLLEKSFETENKLEPERKTQLAKKLGLQPRQVAVWFQNRRARWKTKQLERDYDQLKSSYDSLLSDFDSVRKDNDKLKSEVVSLMEKLQGKVVGGAGGNEKSDILEVDAMTILQVKVKAEDRLSSGSGGSAVVDEHSPQLVDSGDSYFHTDHEEYPGPGGCNVPPPMDGLQSEEDDGSDDHGSCHGYFSNVFVAEEQHHEQGEEPIGWFWS*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="5">
          <exon_coordinates>
            <exon e_start="103160" e_stop="103410"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.944"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.944">
            <gDNA_exon_boundary e_start="103160" e_stop="103410" e_length="251"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="103160" stop="103410"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E581972" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="18" AGS_serial="5" gDNA_strand="+"/>
          <translation>
            <gDNA_template>ACCCTGAAAAGAAGAGAATTTCTTTTTTATCAACGAGCGTTTTCTTTAAGCAAAATTTTATAATTTTGTGGGATTCGATTACTTGCTGAGCAATAAGTGCATGTCCTGCGTTGTTGGGTACGTAAATGAAGGTGCACTTGTTGGAGAAGAGCTTTGAGACAGAAAACAAGCTGGAGCCCGAGCGCAAAACCCAGCTGGCCAAAAAGCTGGGGCTGCAGCCCAGACAGGTGGCTGTATGGTTCCAAAACCGC</gDNA_template>
            <first_frame> T  L  K  R  R  E  F  L  F  Y  Q  R  A  F  S  L  S  K  I  L  *  F  C  G  I  R  L  L  A  E  Q  *  V  H  V  L  R  C  W  V  R  K  *  R  C  T  C  W  R  R  A  L  R  Q  K  T  S  W  S  P  S  A  K  P  S  W  P  K  S  W  G  C  S  P  D  R  W  L  Y  G  S  K  T   </first_frame>
            <second_frame>  P  *  K  E  E  N  F  F  F  I  N  E  R  F  L  *  A  K  F  Y  N  F  V  G  F  D  Y  L  L  S  N  K  C  M  S  C  V  V  G  Y  V  N  E  G  A  L  V  G  E  E  L  *  D  R  K  Q  A  G  A  R  A  Q  N  P  A  G  Q  K  A  G  A  A  A  Q  T  G  G  C  M  V  P  K  P  </second_frame>
            <third_frame>   P  E  K  K  R  I  S  F  L  S  T  S  V  F  F  K  Q  N  F  I  I  L  W  D  S  I  T  C  *  A  I  S  A  C  P  A  L  L  G  T  *  M  K  V  H  L  L  E  K  S  F  E  T  E  N  K  L  E  P  E  R  K  T  Q  L  A  K  K  L  G  L  Q  P  R  Q  V  A  V  W  F  Q  N  R </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <none gDNA_id="C02HBa0236E02.1"/>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="19" PGL_strand="+" PGL_start="108550" PGL_stop="112660"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="108550" e_stop="108774"/>
            <exon e_start="110228" e_stop="110516"/>
            <exon e_start="110638" e_stop="110744"/>
            <exon e_start="110879" e_stop="111011"/>
            <exon e_start="111114" e_stop="111308"/>
            <exon e_start="112078" e_stop="112660"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.999" acc_prob="0.912" e_score="1.000"/>
          <exon-intron don_prob="0.999" acc_prob="0.985" e_score="1.000"/>
          <exon-intron don_prob="0.878" acc_prob="0.849" e_score="1.000"/>
          <exon-intron don_prob="0.949" acc_prob="0.785" e_score="1.000"/>
          <exon-intron don_prob="0.975" acc_prob="0.997" e_score="1.000"/>
          <exon-only e_score="0.996"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="108550" e_stop="108774" e_length="225"/>
          </exon>
          <intron i_serial="1" don_prob="0.999" acc_prob="0.912">
            <gDNA_intron_boundary i_start="108775" i_stop="110227" i_length="1453"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="110228" e_stop="110516" e_length="289"/>
          </exon>
          <intron i_serial="2" don_prob="0.999" acc_prob="0.985">
            <gDNA_intron_boundary i_start="110517" i_stop="110637" i_length="121"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="110638" e_stop="110744" e_length="107"/>
          </exon>
          <intron i_serial="3" don_prob="0.878" acc_prob="0.849">
            <gDNA_intron_boundary i_start="110745" i_stop="110878" i_length="134"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="110879" e_stop="111011" e_length="133"/>
          </exon>
          <intron i_serial="4" don_prob="0.949" acc_prob="0.785">
            <gDNA_intron_boundary i_start="111012" i_stop="111113" i_length="102"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="111114" e_stop="111308" e_length="195"/>
          </exon>
          <intron i_serial="5" don_prob="0.975" acc_prob="0.997">
            <gDNA_intron_boundary i_start="111309" i_stop="112077" i_length="769"/>
          </intron>
          <exon e_serial="6" e_score="0.996">
            <gDNA_exon_boundary e_start="112078" e_stop="112660" e_length="583"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="108550" stop="108774"/>
              <exon start="110228" stop="110411"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E439974" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="108551" stop="108774"/>
              <exon start="110228" stop="110516"/>
              <exon start="110638" stop="110744"/>
              <exon start="110879" stop="110910"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E375974" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="108551" stop="108774"/>
              <exon start="110228" stop="110516"/>
              <exon start="110638" stop="110658"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E323625" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="108565" stop="108774"/>
              <exon start="110228" stop="110513"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E319500" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="108663" stop="108774"/>
              <exon start="110228" stop="110516"/>
              <exon start="110638" stop="110744"/>
              <exon start="110879" stop="111006"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E481345" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="108665" stop="108774"/>
              <exon start="110228" stop="110516"/>
              <exon start="110638" stop="110744"/>
              <exon start="110879" stop="111011"/>
              <exon start="111114" stop="111187"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E348677" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="108704" stop="108774"/>
              <exon start="110228" stop="110516"/>
              <exon start="110638" stop="110744"/>
              <exon start="110879" stop="111011"/>
              <exon start="111114" stop="111308"/>
              <exon start="112078" stop="112146"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E689210" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="108705" stop="108774"/>
              <exon start="110228" stop="110516"/>
              <exon start="110638" stop="110744"/>
              <exon start="110879" stop="110891"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E324984" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="108743" stop="108774"/>
              <exon start="110228" stop="110516"/>
              <exon start="110638" stop="110744"/>
              <exon start="110879" stop="111011"/>
              <exon start="111114" stop="111180"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E687715" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="110963" stop="111011"/>
              <exon start="111114" stop="111308"/>
              <exon start="112078" stop="112544"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E375973" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="112182" stop="112660"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E253024" strand="-"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="19" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>CCGTGCTGCCGGCCCAATTTTGGTGTGAAATAGCGCCGTCTCATTCTACTGTTCTCGCCGGTTACAAATATCTCTTTTCTACTCTCTCTGTCTATTACTCTTCACTCACTATACACATAAAATCCTCCATTGTTTAGTAGGTTAAAATCTGCTTGTCGTTGAAGAGGAGAGTTCAAAATCATTTCGATTTGCTGCTTTACCCGATCATTTCACCGCATTTTCCTG : ATCTAATCCATATATGATGTCTGAGGAAGCTGCTAGAGATCTCATTCCACTACCTGAAGCTGGGATGAACAATGAGATCCCCAGTAATGGGAGTGTTCCAGCAATAAGGGTTGAGAGCATTGATAAAAATTCAAAAGATAAGGAAAGAGAAAATCCTGCCTTACTGGTTGGACCTTGCCTTAATGGAGACGGTAAGGTGAATACTGGGGCAGAGGTGGGAAATTCTGAAGTGGAATACATAGAATCTGAGAATTTGAATGATGTAGAAGATGTTGACACAAGTCTCAAG : ACACTGTTGACTGGGCTTGACTCCAAGGACTGGGTTTTAGTCTGTGAGGCACTCAATGACGTTCGGCGTCTGTCCCTATTTCACAAAGAAGCAATGGTTGATATGTT : GAGAAATGTGATCTCCCTTGTTGTGAAATCTTTGAAAAATCCGAGAAGTGCTGTTTGTAAGACTGCTATTATGGCATCAGCTGACATTTTCAAAGCATACTGTGACACCATAGTTGACTTGATGGATCCACTG : CTTGTACAACTTCTTCTGAAGTCTTCACAAGACAAGCGATTTGTTTGCGAGGCAGCTGAAAAAGCTCTAAAAGCAATGACAATGTGGGTTTCTCCATCGCTGTTGTTACCGAAGTTGCAACCAAATTTGAAACACAGAAATCCTAGAATTCGAGCAAAAGCTTCAAGCTGCTTTTCTCGAAGTGTACCACGTCTG : GGAGTAGAGGGAATTAAAGCATATGGAATTGAGAACTTGATCCGAATAGCTGCATCGCAGCTCAGTGACCAGCTTCCTGAGTCGAGGGAGGCCGCTCGTTCACTGTTGTTAGAACTGCAAAATATCTACGAAAAAGCATTCAATGTTATCCCCCCACCAGTAGTGAATGAAGACCCAGAAACAATTACCGTGAGTGAGGACCCAGAAACAATATCCTGGGAGCATTTCTGTCAATCAAAGCTCTCACCTTTGAGTGCTCAAGCAGTTCTTCGTGTAACCAATCTCACTAGGGAGGGTATTGTTTTAGGTTCATAGTATTTGTTCAAGCAATGAGCTATAATTCACCATTGTCCTCCATTTTTTGGTTTGGTTTCTTATACCTGTATATACCATGAAAGGTTTCAGGTGTTTGCGAGGCAGTTAGACCATATATAGAGCTATAGTTCTATAGTTTCTTGAAATATGGTTTAGATTACGTTTGCATTATACTTAAAGTCATTCATGAATGCTTGCTTTGCATTGCAGTATACATGTAATTGTGCTCGTTCATTTTTCCCATGGTATGTTAATGATTGAAAAGCAA</gDNA_template>
            <first_frame> P  C  C  R  P  N  F  G  V  K  *  R  R  L  I  L  L  F  S  P  V  T  N  I  S  F  L  L  S  L  S  I  T  L  H  S  L  Y  T  *  N  P  P  L  F  S  R  L  K  S  A  C  R  *  R  G  E  F  K  I  I  S  I  C  C  F  T  R  S  F  H  R  I  F  L  :  I  *  S  I  Y  D  V  *  G  S  C  *  R  S  H  S  T  T  *  S  W  D  E  Q  *  D  P  Q  *  W  E  C  S  S  N  K  G  *  E  H  *  *  K  F  K  R  *  G  K  R  K  S  C  L  T  G  W  T  L  P  *  W  R  R  *  G  E  Y  W  G  R  G  G  K  F  *  S  G  I  H  R  I  *  E  F  E  *  C  R  R  C  *  H  K  S  Q   : D  T  V  D  W  A  *  L  Q  G  L  G  F  S  L  *  G  T  Q  *  R  S  A  S  V  P  I  S  Q  R  S  N  G  *  Y  V  :  E  K  C  D  L  P  C  C  E  I  F  E  K  S  E  K  C  C  L  *  D  C  Y  Y  G  I  S  *  H  F  Q  S  I  L  *  H  H  S  *  L  D  G  S  T   : A  C  T  T  S  S  E  V  F  T  R  Q  A  I  C  L  R  G  S  *  K  S  S  K  S  N  D  N  V  G  F  S  I  A  V  V  T  E  V  A  T  K  F  E  T  Q  K  S  *  N  S  S  K  S  F  K  L  L  F  S  K  C  T  T  S   : G  S  R  G  N  *  S  I  W  N  *  E  L  D  P  N  S  C  I  A  A  Q  *  P  A  S  *  V  E  G  G  R  S  F  T  V  V  R  T  A  K  Y  L  R  K  S  I  Q  C  Y  P  P  T  S  S  E  *  R  P  R  N  N  Y  R  E  *  G  P  R  N  N  I  L  G  A  F  L  S  I  K  A  L  T  F  E  C  S  S  S  S  S  C  N  Q  S  H  *  G  G  Y  C  F  R  F  I  V  F  V  Q  A  M  S  Y  N  S  P  L  S  S  I  F  W  F  G  F  L  Y  L  Y  I  P  *  K  V  S  G  V  C  E  A  V  R  P  Y  I  E  L  *  F  Y  S  F  L  K  Y  G  L  D  Y  V  C  I  I  L  K  V  I  H  E  C  L  L  C  I  A  V  Y  M  *  L  C  S  F  I  F  P  M  V  C  *  *  L  K  S   </first_frame>
            <second_frame>  R  A  A  G  P  I  L  V  *  N  S  A  V  S  F  Y  C  S  R  R  L  Q  I  S  L  F  Y  S  L  C  L  L  L  F  T  H  Y  T  H  K  I  L  H  C  L  V  G  *  N  L  L  V  V  E  E  E  S  S  K  S  F  R  F  A  A  L  P  D  H  F  T  A  F  S  * :   S  N  P  Y  M  M  S  E  E  A  A  R  D  L  I  P  L  P  E  A  G  M  N  N  E  I  P  S  N  G  S  V  P  A  I  R  V  E  S  I  D  K  N  S  K  D  K  E  R  E  N  P  A  L  L  V  G  P  C  L  N  G  D  G  K  V  N  T  G  A  E  V  G  N  S  E  V  E  Y  I  E  S  E  N  L  N  D  V  E  D  V  D  T  S  L  K  :  T  L  L  T  G  L  D  S  K  D  W  V  L  V  C  E  A  L  N  D  V  R  R  L  S  L  F  H  K  E  A  M  V  D  M  L :   R  N  V  I  S  L  V  V  K  S  L  K  N  P  R  S  A  V  C  K  T  A  I  M  A  S  A  D  I  F  K  A  Y  C  D  T  I  V  D  L  M  D  P  L  :  L  V  Q  L  L  L  K  S  S  Q  D  K  R  F  V  C  E  A  A  E  K  A  L  K  A  M  T  M  W  V  S  P  S  L  L  L  P  K  L  Q  P  N  L  K  H  R  N  P  R  I  R  A  K  A  S  S  C  F  S  R  S  V  P  R  L  :  G  V  E  G  I  K  A  Y  G  I  E  N  L  I  R  I  A  A  S  Q  L  S  D  Q  L  P  E  S  R  E  A  A  R  S  L  L  L  E  L  Q  N  I  Y  E  K  A  F  N  V  I  P  P  P  V  V  N  E  D  P  E  T  I  T  V  S  E  D  P  E  T  I  S  W  E  H  F  C  Q  S  K  L  S  P  L  S  A  Q  A  V  L  R  V  T  N  L  T  R  E  G  I  V  L  G  S  *  Y  L  F  K  Q  *  A  I  I  H  H  C  P  P  F  F  G  L  V  S  Y  T  C  I  Y  H  E  R  F  Q  V  F  A  R  Q  L  D  H  I  *  S  Y  S  S  I  V  S  *  N  M  V  *  I  T  F  A  L  Y  L  K  S  F  M  N  A  C  F  A  L  Q  Y  T  C  N  C  A  R  S  F  F  P  W  Y  V  N  D  *  K  A  </second_frame>
            <third_frame>   V  L  P  A  Q  F  W  C  E  I  A  P  S  H  S  T  V  L  A  G  Y  K  Y  L  F  S  T  L  S  V  Y  Y  S  S  L  T  I  H  I  K  S  S  I  V  *  *  V  K  I  C  L  S  L  K  R  R  V  Q  N  H  F  D  L  L  L  Y  P  I  I  S  P  H  F  P   : D  L  I  H  I  *  C  L  R  K  L  L  E  I  S  F  H  Y  L  K  L  G  *  T  M  R  S  P  V  M  G  V  F  Q  Q  *  G  L  R  A  L  I  K  I  Q  K  I  R  K  E  K  I  L  P  Y  W  L  D  L  A  L  M  E  T  V  R  *  I  L  G  Q  R  W  E  I  L  K  W  N  T  *  N  L  R  I  *  M  M  *  K  M  L  T  Q  V  S  R :   H  C  *  L  G  L  T  P  R  T  G  F  *  S  V  R  H  S  M  T  F  G  V  C  P  Y  F  T  K  K  Q  W  L  I  C   : *  E  M  *  S  P  L  L  *  N  L  *  K  I  R  E  V  L  F  V  R  L  L  L  W  H  Q  L  T  F  S  K  H  T  V  T  P  *  L  T  *  W  I  H  C :   L  Y  N  F  F  *  S  L  H  K  T  S  D  L  F  A  R  Q  L  K  K  L  *  K  Q  *  Q  C  G  F  L  H  R  C  C  Y  R  S  C  N  Q  I  *  N  T  E  I  L  E  F  E  Q  K  L  Q  A  A  F  L  E  V  Y  H  V  W :   E  *  R  E  L  K  H  M  E  L  R  T  *  S  E  *  L  H  R  S  S  V  T  S  F  L  S  R  G  R  P  L  V  H  C  C  *  N  C  K  I  S  T  K  K  H  S  M  L  S  P  H  Q  *  *  M  K  T  Q  K  Q  L  P  *  V  R  T  Q  K  Q  Y  P  G  S  I  S  V  N  Q  S  S  H  L  *  V  L  K  Q  F  F  V  *  P  I  S  L  G  R  V  L  F  *  V  H  S  I  C  S  S  N  E  L  *  F  T  I  V  L  H  F  L  V  W  F  L  I  P  V  Y  T  M  K  G  F  R  C  L  R  G  S  *  T  I  Y  R  A  I  V  L  *  F  L  E  I  W  F  R  L  R  L  H  Y  T  *  S  H  S  *  M  L  A  L  H  C  S  I  H  V  I  V  L  V  H  F  S  H  G  M  L  M  I  E  K  Q </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02HBa0236E02.1" strand="+"/>
                <serials PGL_serial="19" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="110229" stop="110516"/>
                    <exon start="110638" stop="110744"/>
                    <exon start="110879" stop="111011"/>
                    <exon start="111114" stop="111308"/>
                    <exon start="112078" stop="112392"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>1035</number_coding_nucleotides>
                  <number_encoded_amino_acids>345</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>SNPYMMSEEAARDLIPLPEAGMNNEIPSNGSVPAIRVESIDKNSKDKERENPALLVGPCLNGDGKVNTGAEVGNSEVEYIESENLNDVEDVDTSLKTLLTGLDSKDWVLVCEALNDVRRLSLFHKEAMVDMLRNVISLVVKSLKNPRSAVCKTAIMASADIFKAYCDTIVDLMDPLLVQLLLKSSQDKRFVCEAAEKALKAMTMWVSPSLLLPKLQPNLKHRNPRIRAKASSCFSRSVPRLGVEGIKAYGIENLIRIAASQLSDQLPESREAARSLLLELQNIYEKAFNVIPPPVVNEDPETITVSEDPETISWEHFCQSKLSPLSAQAVLRVTNLTREGIVLGS*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="2">
          <exon_coordinates>
            <exon e_start="108550" e_stop="108774"/>
            <exon e_start="110228" e_stop="110676"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.999" acc_prob="0.912" e_score="1.000"/>
          <exon-only e_score="0.949"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="108550" e_stop="108774" e_length="225"/>
          </exon>
          <intron i_serial="1" don_prob="0.999" acc_prob="0.912">
            <gDNA_intron_boundary i_start="108775" i_stop="110227" i_length="1453"/>
          </intron>
          <exon e_serial="2" e_score="0.949">
            <gDNA_exon_boundary e_start="110228" e_stop="110676" e_length="449"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="108550" stop="108774"/>
              <exon start="110228" stop="110676"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E416974" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="108550" stop="108774"/>
              <exon start="110228" stop="110411"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E439974" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="108565" stop="108774"/>
              <exon start="110228" stop="110513"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E319500" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="19" AGS_serial="2" gDNA_strand="+"/>
          <translation>
            <gDNA_template>CCGTGCTGCCGGCCCAATTTTGGTGTGAAATAGCGCCGTCTCATTCTACTGTTCTCGCCGGTTACAAATATCTCTTTTCTACTCTCTCTGTCTATTACTCTTCACTCACTATACACATAAAATCCTCCATTGTTTAGTAGGTTAAAATCTGCTTGTCGTTGAAGAGGAGAGTTCAAAATCATTTCGATTTGCTGCTTTACCCGATCATTTCACCGCATTTTCCTG : ATCTAATCCATATATGATGTCTGAGGAAGCTGCTAGAGATCTCATTCCACTACCTGAAGCTGGGATGAACAATGAGATCCCCAGTAATGGGAGTGTTCCAGCAATAAGGGTTGAGAGCATTGATAAAAATTCAAAAGATAAGGAAAGAGAAAATCCTGCCTTACTGGTTGGACCTTGCCTTAATGGAGACGGTAAGGTGAATACTGGGGCAGAGGTGGGAAATTCTGAAGTGGAATACATAGAATCTGAGAATTTGAATGATGTAGAAGATGTTGACACAAGTCTCAAGGTAATGATTCCTGATATAGTTTGATGTTTCATTTTAGTATTTTGCATCTCGGTTTTGCTTCTTTATATTGGTTTACAAAAGTCTCTTTTCAATGTCTTTGCCTCTCCTTTTTCATTTGTAGACACTGTTGACTGGGCTTGACTCCAAGGACTGGGTTTTA</gDNA_template>
            <first_frame> P  C  C  R  P  N  F  G  V  K  *  R  R  L  I  L  L  F  S  P  V  T  N  I  S  F  L  L  S  L  S  I  T  L  H  S  L  Y  T  *  N  P  P  L  F  S  R  L  K  S  A  C  R  *  R  G  E  F  K  I  I  S  I  C  C  F  T  R  S  F  H  R  I  F  L  :  I  *  S  I  Y  D  V  *  G  S  C  *  R  S  H  S  T  T  *  S  W  D  E  Q  *  D  P  Q  *  W  E  C  S  S  N  K  G  *  E  H  *  *  K  F  K  R  *  G  K  R  K  S  C  L  T  G  W  T  L  P  *  W  R  R  *  G  E  Y  W  G  R  G  G  K  F  *  S  G  I  H  R  I  *  E  F  E  *  C  R  R  C  *  H  K  S  Q  G  N  D  S  *  Y  S  L  M  F  H  F  S  I  L  H  L  G  F  A  S  L  Y  W  F  T  K  V  S  F  Q  C  L  C  L  S  F  F  I  C  R  H  C  *  L  G  L  T  P  R  T  G  F   </first_frame>
            <second_frame>  R  A  A  G  P  I  L  V  *  N  S  A  V  S  F  Y  C  S  R  R  L  Q  I  S  L  F  Y  S  L  C  L  L  L  F  T  H  Y  T  H  K  I  L  H  C  L  V  G  *  N  L  L  V  V  E  E  E  S  S  K  S  F  R  F  A  A  L  P  D  H  F  T  A  F  S  * :   S  N  P  Y  M  M  S  E  E  A  A  R  D  L  I  P  L  P  E  A  G  M  N  N  E  I  P  S  N  G  S  V  P  A  I  R  V  E  S  I  D  K  N  S  K  D  K  E  R  E  N  P  A  L  L  V  G  P  C  L  N  G  D  G  K  V  N  T  G  A  E  V  G  N  S  E  V  E  Y  I  E  S  E  N  L  N  D  V  E  D  V  D  T  S  L  K  V  M  I  P  D  I  V  *  C  F  I  L  V  F  C  I  S  V  L  L  L  Y  I  G  L  Q  K  S  L  F  N  V  F  A  S  P  F  S  F  V  D  T  V  D  W  A  *  L  Q  G  L  G  F  </second_frame>
            <third_frame>   V  L  P  A  Q  F  W  C  E  I  A  P  S  H  S  T  V  L  A  G  Y  K  Y  L  F  S  T  L  S  V  Y  Y  S  S  L  T  I  H  I  K  S  S  I  V  *  *  V  K  I  C  L  S  L  K  R  R  V  Q  N  H  F  D  L  L  L  Y  P  I  I  S  P  H  F  P   : D  L  I  H  I  *  C  L  R  K  L  L  E  I  S  F  H  Y  L  K  L  G  *  T  M  R  S  P  V  M  G  V  F  Q  Q  *  G  L  R  A  L  I  K  I  Q  K  I  R  K  E  K  I  L  P  Y  W  L  D  L  A  L  M  E  T  V  R  *  I  L  G  Q  R  W  E  I  L  K  W  N  T  *  N  L  R  I  *  M  M  *  K  M  L  T  Q  V  S  R  *  *  F  L  I  *  F  D  V  S  F  *  Y  F  A  S  R  F  C  F  F  I  L  V  Y  K  S  L  F  S  M  S  L  P  L  L  F  H  L  *  T  L  L  T  G  L  D  S  K  D  W  V  L </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02HBa0236E02.1" strand="+"/>
                <serials PGL_serial="19" AGS_serial="2" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="110229" stop="110540"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>309</number_coding_nucleotides>
                  <number_encoded_amino_acids>103</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>SNPYMMSEEAARDLIPLPEAGMNNEIPSNGSVPAIRVESIDKNSKDKERENPALLVGPCLNGDGKVNTGAEVGNSEVEYIESENLNDVEDVDTSLKVMIPDIV*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="20" PGL_strand="+" PGL_start="117449" PGL_stop="118288"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="117449" e_stop="118162"/>
            <exon e_start="118272" e_stop="118288"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.720" acc_prob="0.982" e_score="0.950"/>
          <exon-only e_score="0.706"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.950">
            <gDNA_exon_boundary e_start="117449" e_stop="118162" e_length="714"/>
          </exon>
          <intron i_serial="1" don_prob="0.720" acc_prob="0.982">
            <gDNA_intron_boundary i_start="118163" i_stop="118271" i_length="109"/>
          </intron>
          <exon e_serial="2" e_score="0.706">
            <gDNA_exon_boundary e_start="118272" e_stop="118288" e_length="17"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="117449" stop="117994"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E300805" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="117462" stop="118162"/>
              <exon start="118272" stop="118288"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E434263" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="117518" stop="117698"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E281199" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="20" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>TTCATTGAACAAGATATATACCGTAGTAATATAGAATTATAACATTACATCTATATATAATTCATTACATTCCCACAAAACTCAAACACAAGATCCTATTTTGCATCAGAGCTACAGAAATCAAGAAAGGTCTCACACAAACAAGTTTGCATATTGTTATCAAATCATAAGAAGTTAGTAACAAACAATAACACACACACAATACAGCGTTTTGGTCTTATCTACACTGTATACAAGTGACCTCTAAAAGACAAGATTGCCGTGTTGCACGACATCTCAGGAGTACCAGAAAGCAGGGGGGAAAACTACAGCCATGCTGGATTCTTCAGAGGGGTAACAATAGCTTTGACTTGCAAGTAGTTACTTAGGCTGTAGACTCCCTTCTCTCTTCCATGTCCACTCATCTTATAACCACCAAACGGAATGGCAGCATCAAAGATGTTAAAGCAGTTAACCCACACTGTCCCTACTCTAAGGGCTCGAGATATTGTGTTGGCTGCATCTATATTCTGGGTAAAAACACCCGCTGCCAACCCATAATGTGACGAGTTTGCCCTTCGGATGACCTCTTCAACATCCCTGTTTGTTTCAAGGTCAGGTTCAGTGTTAATAAACAAAATACAAGCACAGATACAATACAAATGAAATGTAATCTCACTTGAATTTCAAGAGGGACTGCACTGGTCCAAATATCTCATCTCTGGCAATCAGCAT : TTATACCTGGACATTTG</gDNA_template>
            <first_frame> F  I  E  Q  D  I  Y  R  S  N  I  E  L  *  H  Y  I  Y  I  *  F  I  T  F  P  Q  N  S  N  T  R  S  Y  F  A  S  E  L  Q  K  S  R  K  V  S  H  K  Q  V  C  I  L  L  S  N  H  K  K  L  V  T  N  N  N  T  H  T  I  Q  R  F  G  L  I  Y  T  V  Y  K  *  P  L  K  D  K  I  A  V  L  H  D  I  S  G  V  P  E  S  R  G  E  N  Y  S  H  A  G  F  F  R  G  V  T  I  A  L  T  C  K  *  L  L  R  L  *  T  P  F  S  L  P  C  P  L  I  L  *  P  P  N  G  M  A  A  S  K  M  L  K  Q  L  T  H  T  V  P  T  L  R  A  R  D  I  V  L  A  A  S  I  F  W  V  K  T  P  A  A  N  P  *  C  D  E  F  A  L  R  M  T  S  S  T  S  L  F  V  S  R  S  G  S  V  L  I  N  K  I  Q  A  Q  I  Q  Y  K  *  N  V  I  S  L  E  F  Q  E  G  L  H  W  S  K  Y  L  I  S  G  N  Q  H  :  L  Y  L  D  I   </first_frame>
            <second_frame>  S  L  N  K  I  Y  T  V  V  I  *  N  Y  N  I  T  S  I  Y  N  S  L  H  S  H  K  T  Q  T  Q  D  P  I  L  H  Q  S  Y  R  N  Q  E  R  S  H  T  N  K  F  A  Y  C  Y  Q  I  I  R  S  *  *  Q  T  I  T  H  T  Q  Y  S  V  L  V  L  S  T  L  Y  T  S  D  L  *  K  T  R  L  P  C  C  T  T  S  Q  E  Y  Q  K  A  G  G  K  T  T  A  M  L  D  S  S  E  G  *  Q  *  L  *  L  A  S  S  Y  L  G  C  R  L  P  S  L  F  H  V  H  S  S  Y  N  H  Q  T  E  W  Q  H  Q  R  C  *  S  S  *  P  T  L  S  L  L  *  G  L  E  I  L  C  W  L  H  L  Y  S  G  *  K  H  P  L  P  T  H  N  V  T  S  L  P  F  G  *  P  L  Q  H  P  C  L  F  Q  G  Q  V  Q  C  *  *  T  K  Y  K  H  R  Y  N  T  N  E  M  *  S  H  L  N  F  K  R  D  C  T  G  P  N  I  S  S  L  A  I  S  I :   Y  T  W  T  F  </second_frame>
            <third_frame>   H  *  T  R  Y  I  P  *  *  Y  R  I  I  T  L  H  L  Y  I  I  H  Y  I  P  T  K  L  K  H  K  I  L  F  C  I  R  A  T  E  I  K  K  G  L  T  Q  T  S  L  H  I  V  I  K  S  *  E  V  S  N  K  Q  *  H  T  H  N  T  A  F  W  S  Y  L  H  C  I  Q  V  T  S  K  R  Q  D  C  R  V  A  R  H  L  R  S  T  R  K  Q  G  G  K  L  Q  P  C  W  I  L  Q  R  G  N  N  S  F  D  L  Q  V  V  T  *  A  V  D  S  L  L  S  S  M  S  T  H  L  I  T  T  K  R  N  G  S  I  K  D  V  K  A  V  N  P  H  C  P  Y  S  K  G  S  R  Y  C  V  G  C  I  Y  I  L  G  K  N  T  R  C  Q  P  I  M  *  R  V  C  P  S  D  D  L  F  N  I  P  V  C  F  K  V  R  F  S  V  N  K  Q  N  T  S  T  D  T  I  Q  M  K  C  N  L  T  *  I  S  R  G  T  A  L  V  Q  I  S  H  L  W  Q  S  A   : F  I  P  G  H  L </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <none gDNA_id="C02HBa0236E02.1"/>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="21" PGL_strand="-" PGL_start="123147" PGL_stop="117463"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="123141" e_stop="123052"/>
            <exon e_start="121369" e_stop="121229"/>
            <exon e_start="121149" e_stop="120036"/>
            <exon e_start="119816" e_stop="119730"/>
            <exon e_start="119086" e_stop="118913"/>
            <exon e_start="118833" e_stop="118696"/>
            <exon e_start="118415" e_stop="118278"/>
            <exon e_start="118168" e_stop="118107"/>
            <exon e_start="118027" e_stop="117463"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.000" acc_prob="0.901" e_score="1.000"/>
          <exon-intron don_prob="0.986" acc_prob="0.750" e_score="1.000"/>
          <exon-intron don_prob="0.959" acc_prob="0.980" e_score="0.987"/>
          <exon-intron don_prob="0.996" acc_prob="1.000" e_score="1.000"/>
          <exon-intron don_prob="0.933" acc_prob="0.857" e_score="1.000"/>
          <exon-intron don_prob="0.997" acc_prob="0.996" e_score="1.000"/>
          <exon-intron don_prob="0.961" acc_prob="0.997" e_score="1.000"/>
          <exon-intron don_prob="0.995" acc_prob="0.920" e_score="1.000"/>
          <exon-only e_score="0.998"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="123141" e_stop="123052" e_length="90"/>
          </exon>
          <intron i_serial="1" don_prob="0.000" acc_prob="0.901">
            <gDNA_intron_boundary i_start="123051" i_stop="121370" i_length="1682"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="121369" e_stop="121229" e_length="141"/>
          </exon>
          <intron i_serial="2" don_prob="0.986" acc_prob="0.750">
            <gDNA_intron_boundary i_start="121228" i_stop="121150" i_length="79"/>
          </intron>
          <exon e_serial="3" e_score="0.987">
            <gDNA_exon_boundary e_start="121149" e_stop="120036" e_length="1114"/>
          </exon>
          <intron i_serial="3" don_prob="0.959" acc_prob="0.980">
            <gDNA_intron_boundary i_start="120035" i_stop="119817" i_length="219"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="119816" e_stop="119730" e_length="87"/>
          </exon>
          <intron i_serial="4" don_prob="0.996" acc_prob="1.000">
            <gDNA_intron_boundary i_start="119729" i_stop="119087" i_length="643"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="119086" e_stop="118913" e_length="174"/>
          </exon>
          <intron i_serial="5" don_prob="0.933" acc_prob="0.857">
            <gDNA_intron_boundary i_start="118912" i_stop="118834" i_length="79"/>
          </intron>
          <exon e_serial="6" e_score="1.000">
            <gDNA_exon_boundary e_start="118833" e_stop="118696" e_length="138"/>
          </exon>
          <intron i_serial="6" don_prob="0.997" acc_prob="0.996">
            <gDNA_intron_boundary i_start="118695" i_stop="118416" i_length="280"/>
          </intron>
          <exon e_serial="7" e_score="1.000">
            <gDNA_exon_boundary e_start="118415" e_stop="118278" e_length="138"/>
          </exon>
          <intron i_serial="7" don_prob="0.961" acc_prob="0.997">
            <gDNA_intron_boundary i_start="118277" i_stop="118169" i_length="109"/>
          </intron>
          <exon e_serial="8" e_score="1.000">
            <gDNA_exon_boundary e_start="118168" e_stop="118107" e_length="62"/>
          </exon>
          <intron i_serial="8" don_prob="0.995" acc_prob="0.920">
            <gDNA_intron_boundary i_start="118106" i_stop="118028" i_length="79"/>
          </intron>
          <exon e_serial="9" e_score="0.998">
            <gDNA_exon_boundary e_start="118027" e_stop="117463" e_length="565"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="123141" stop="123052"/>
              <exon start="121369" stop="121229"/>
              <exon start="121149" stop="120830"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E256721" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="123140" stop="123052"/>
              <exon start="121369" stop="121229"/>
              <exon start="121149" stop="120811"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E271992" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="123139" stop="123052"/>
              <exon start="121369" stop="121229"/>
              <exon start="121149" stop="120960"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E258160" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="123139" stop="123052"/>
              <exon start="121369" stop="121229"/>
              <exon start="121149" stop="121027"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E217486" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="121102" stop="120698"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E336972" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="121032" stop="120557"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E324375" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="120954" stop="120280"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E334199" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="120950" stop="120324"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E329876" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="120798" stop="120307"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E302285" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="120715" stop="120439"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E261296" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="120575" stop="120036"/>
              <exon start="119816" stop="119779"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E264189" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="120541" stop="120036"/>
              <exon start="119816" stop="119730"/>
              <exon start="119086" stop="118942"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E370665" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="120541" stop="120036"/>
              <exon start="119816" stop="119767"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E271439" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="120503" stop="120036"/>
              <exon start="119816" stop="119790"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E249362" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="120491" stop="120036"/>
              <exon start="119816" stop="119781"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E314892" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="120491" stop="120090"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E314995" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="120390" stop="120100"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E257422" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="120193" stop="120036"/>
              <exon start="119816" stop="119730"/>
              <exon start="119086" stop="118913"/>
              <exon start="118833" stop="118725"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E249288" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="120149" stop="120036"/>
              <exon start="119816" stop="119730"/>
              <exon start="119086" stop="118913"/>
              <exon start="118833" stop="118738"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E275091" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="120040" stop="120036"/>
              <exon start="119816" stop="119730"/>
              <exon start="119086" stop="118913"/>
              <exon start="118833" stop="118696"/>
              <exon start="118415" stop="118278"/>
              <exon start="118168" stop="118107"/>
              <exon start="118027" stop="117873"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E261730" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="119790" stop="119730"/>
              <exon start="119086" stop="118913"/>
              <exon start="118833" stop="118696"/>
              <exon start="118415" stop="118278"/>
              <exon start="118168" stop="118155"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E255543" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="119055" stop="118913"/>
              <exon start="118833" stop="118696"/>
              <exon start="118415" stop="118353"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E229381" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="119027" stop="118913"/>
              <exon start="118833" stop="118696"/>
              <exon start="118415" stop="118360"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E229740" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="118792" stop="118696"/>
              <exon start="118415" stop="118278"/>
              <exon start="118168" stop="118107"/>
              <exon start="118027" stop="117589"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E573825" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="118784" stop="118696"/>
              <exon start="118415" stop="118278"/>
              <exon start="118168" stop="118107"/>
              <exon start="118027" stop="117481"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E542978" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="118701" stop="118696"/>
              <exon start="118415" stop="118278"/>
              <exon start="118168" stop="118132"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E264242" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="118376" stop="118278"/>
              <exon start="118168" stop="118107"/>
              <exon start="118027" stop="117694"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E264163" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="118348" stop="118278"/>
              <exon start="118168" stop="118107"/>
              <exon start="118027" stop="117463"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E355126" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="118348" stop="118278"/>
              <exon start="118168" stop="118107"/>
              <exon start="118027" stop="117463"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E349395" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="118167" stop="118107"/>
              <exon start="118027" stop="117517"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E202862" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="118167" stop="118107"/>
              <exon start="118027" stop="117726"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E281400" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="118135" stop="118107"/>
              <exon start="118027" stop="117585"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E733861" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="118026" stop="117610"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E256282" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="21" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>AATTTTGAATGCTCTCTCTTTATGTAAACATTATGCTTTGTATGAAATAAAGGTCCTCTAAGATTTCTGTAAGCAACTTTGAAAATTTCT : TTAGGTACTCCAACTACTGGAGAAAGGGTATCAGAAGGTTTTGTAGCAGTGCCGTGGTGCATGAAGAGCCAATCACTCCACCTGTTGAGGTTAAATATAATCAGCTTCTCATTAATGGACAGTTTGTTGATGCAGCCTCAG : GGAAGACATTTCCTACATTTGACCCTCGAACAGGCGAAGCTATTACTACGGTTGCGGAGGCCGACACTGAAGATGTCAACCGTGCAGTCTTTGCTGCCCGTAAAGCATTTGATGAAGGACCATGGCCTAAAATGACTTGTGCAGTAACCGAACTTTCTTATCTTTCCATATCCTCTTCCTTGTCCCAACAGTGAGAGGCGGATTTAGAATTTGAACTTAACATGTTCAACCTTTAAGGTTCTTATCGCTGAACACATTGATCTATCGGACATACGTGTTTAGATTTTAATATTCTCTCATTTTAGTACTTTCACATATATATTTATTTCCTGTATTATATGGTCCCTCTACCGAAGTTAATTTCTCAGTTGGTCGTTCAACTAATAGTAATTATTTGAGTAATATAAGTCACTTTCTTTGTTGAAGAAAATTGGAATCAAGTTGAAAAATGACTTCTTGAGATAATAACTATTTAGCAAAGTGACCATATGAGAAATCAATCCGCCTCTGCAGACAACTACAGCTTGTTTAAACTCCCAGTCTTACTTAAGCATGTACAATAATGTACTTACTTAACCAAATATTTCCAGGAAAGGTCATGTATAATGTTGCAGTTTGCTGATTTGCTTGAGAGGCACAGTGATGAACTTGCAGCACTTGAGACTTGGGATAAGGGAAAGCCTTACGAACAAGCTGCAAATGAAGAAATACCAATGCTCATTCGTCTTTTCAGATACTATGCTGGTTAAGAAAATAAGAAAAATGGCGTTATGTTTCCTTTTGACAGTTTAATAACCACTTATTGTATATCAATTGACGTTCTAATGTTTGCTGAATCACCCTAAATGCTTTTCTAAGTATTTCTGCTTACATTTCTTATTCAGGTTGGGCTGATAAAATTCATGGTCTTACAGCTCCTGCTGACAGTTTGCACCATGTTCAGACCCTGCATGAGCCAATTGGTGTTGCAGGACAGATAATACCCTGGAATTTTCCGTTATTAATGTTCGCCTGGAAAGTTGGCCCTGCACTTGCTTGTGGTAACACTGTCGTACTAAAACCAGCAGAACAAACACCACTCTCTGCCCTGTATGTGTCAAAGTTATTCCATGAG : GTTGGACTTCCCCCTGGAGTCTTAAATGTCATTCCTGGATCCGGTAGTGCAGGTGCAGATCTTGCCAGTCATATGGATGTCGATAAG : ATTGCTTTTACAGGGTCCACAGAAACTGGTAAAGCTGTCGTAGGTGCAGCTGCAAAGAGCAACCTAAAACCTGTGACATTGGAGCTCGGAGGAAAATCTCCTTTCATCATTTGTGAAGATGCAGACGTTGATAAAGCTGTTGAGTTGGCTCATTCTGCTGTTTTCTTTAACCAG : GGACAATGCTGCTGTGCTGGATCTCGGACATTCGTACATGAAAGAGTATATGATGAATTTGTGGAGAAAGCCAAAGCTCGTGCTTTAAAACGCATTGTTGGAGACCCTTTCAAGAAGGGAGTTGAACAAGGTCCGCAG : ATTGATACAGAGCAATTTGAGAAGATCCTGAAGTACATAAAATCTGGTACTGAAAGCGGGGCTACTCTCGAGTCTGGAGGGGAAAAATTGGGTTCCAAGGGCTTCTATGTCCAACCTACTGTCTTCTCAAATGTCCAG : GATAACATGCTGATTGCCAGAGATGAGATATTTGGACCAGTGCAGTCCCTCTTGAAATTCAA : GGATGTTGAAGAGGTCATCCGAAGGGCAAACTCGTCACATTATGGGTTGGCAGCGGGTGTTTTTACCCAGAATATAGATGCAGCCAACACAATATCTCGAGCCCTTAGAGTAGGGACAGTGTGGGTTAACTGCTTTAACATCTTTGATGCTGCCATTCCGTTTGGTGGTTATAAGATGAGTGGACATGGAAGAGAGAAGGGAGTCTACAGCCTAAGTAACTACTTGCAAGTCAAAGCTATTGTTACCCCTCTGAAGAATCCAGCATGGCTGTAGTTTTCCCCCCTGCTTTCTGGTACTCCTGAGATGTCGTGCAACACGGCAATCTTGTCTTTTAGAGGTCACTTGTATACAGTGTAGATAAGACCAAAACGCTGTATTGTGTGTGTGTTATTGTTTGTTACTAACTTCTTATGATTTGATAACAATATGCAAACTTGTTTGTGTGAGACCTTTCTTGATTTCTGTAGCTCTGATGCAAAATAGGATCTTGTGTTTGAGTTTTGTGGGAATGTAATGAATTATATATAGATGTAATGTTATAATTCTATATTACTACGGTATATA</gDNA_template>
            <first_frame> N  F  E  C  S  L  F  M  *  T  L  C  F  V  *  N  K  G  P  L  R  F  L  *  A  T  L  K  I  S  :  L  G  T  P  T  T  G  E  R  V  S  E  G  F  V  A  V  P  W  C  M  K  S  Q  S  L  H  L  L  R  L  N  I  I  S  F  S  L  M  D  S  L  L  M  Q  P  Q  :  G  R  H  F  L  H  L  T  L  E  Q  A  K  L  L  L  R  L  R  R  P  T  L  K  M  S  T  V  Q  S  L  L  P  V  K  H  L  M  K  D  H  G  L  K  *  L  V  Q  *  P  N  F  L  I  F  P  Y  P  L  P  C  P  N  S  E  R  R  I  *  N  L  N  L  T  C  S  T  F  K  V  L  I  A  E  H  I  D  L  S  D  I  R  V  *  I  L  I  F  S  H  F  S  T  F  T  Y  I  F  I  S  C  I  I  W  S  L  Y  R  S  *  F  L  S  W  S  F  N  *  *  *  L  F  E  *  Y  K  S  L  S  L  L  K  K  I  G  I  K  L  K  N  D  F  L  R  *  *  L  F  S  K  V  T  I  *  E  I  N  P  P  L  Q  T  T  T  A  C  L  N  S  Q  S  Y  L  S  M  Y  N  N  V  L  T  *  P  N  I  S  R  K  G  H  V  *  C  C  S  L  L  I  C  L  R  G  T  V  M  N  L  Q  H  L  R  L  G  I  R  E  S  L  T  N  K  L  Q  M  K  K  Y  Q  C  S  F  V  F  S  D  T  M  L  V  K  K  I  R  K  M  A  L  C  F  L  L  T  V  *  *  P  L  I  V  Y  Q  L  T  F  *  C  L  L  N  H  P  K  C  F  S  K  Y  F  C  L  H  F  L  F  R  L  G  *  *  N  S  W  S  Y  S  S  C  *  Q  F  A  P  C  S  D  P  A  *  A  N  W  C  C  R  T  D  N  T  L  E  F  S  V  I  N  V  R  L  E  S  W  P  C  T  C  L  W  *  H  C  R  T  K  T  S  R  T  N  T  T  L  C  P  V  C  V  K  V  I  P  *   : G  W  T  S  P  W  S  L  K  C  H  S  W  I  R  *  C  R  C  R  S  C  Q  S  Y  G  C  R  *   : D  C  F  Y  R  V  H  R  N  W  *  S  C  R  R  C  S  C  K  E  Q  P  K  T  C  D  I  G  A  R  R  K  I  S  F  H  H  L  *  R  C  R  R  *  *  S  C  *  V  G  S  F  C  C  F  L  *  P   : G  T  M  L  L  C  W  I  S  D  I  R  T  *  K  S  I  *  *  I  C  G  E  S  Q  S  S  C  F  K  T  H  C  W  R  P  F  Q  E  G  S  *  T  R  S  A   : D  *  Y  R  A  I  *  E  D  P  E  V  H  K  I  W  Y  *  K  R  G  Y  S  R  V  W  R  G  K  I  G  F  Q  G  L  L  C  P  T  Y  C  L  L  K  C  P   : G  *  H  A  D  C  Q  R  *  D  I  W  T  S  A  V  P  L  E  I  Q  :  G  C  *  R  G  H  P  K  G  K  L  V  T  L  W  V  G  S  G  C  F  Y  P  E  Y  R  C  S  Q  H  N  I  S  S  P  *  S  R  D  S  V  G  *  L  L  *  H  L  *  C  C  H  S  V  W  W  L  *  D  E  W  T  W  K  R  E  G  S  L  Q  P  K  *  L  L  A  S  Q  S  Y  C  Y  P  S  E  E  S  S  M  A  V  V  F  P  P  A  F  W  Y  S  *  D  V  V  Q  H  G  N  L  V  F  *  R  S  L  V  Y  S  V  D  K  T  K  T  L  Y  C  V  C  V  I  V  C  Y  *  L  L  M  I  *  *  Q  Y  A  N  L  F  V  *  D  L  S  *  F  L  *  L  *  C  K  I  G  S  C  V  *  V  L  W  E  C  N  E  L  Y  I  D  V  M  L  *  F  Y  I  T  T  V  Y  </first_frame>
            <second_frame>  I  L  N  A  L  S  L  C  K  H  Y  A  L  Y  E  I  K  V  L  *  D  F  C  K  Q  L  *  K  F  L :   *  V  L  Q  L  L  E  K  G  Y  Q  K  V  L  *  Q  C  R  G  A  *  R  A  N  H  S  T  C  *  G  *  I  *  S  A  S  H  *  W  T  V  C  *  C  S  L  R :   E  D  I  S  Y  I  *  P  S  N  R  R  S  Y  Y  Y  G  C  G  G  R  H  *  R  C  Q  P  C  S  L  C  C  P  *  S  I  *  *  R  T  M  A  *  N  D  L  C  S  N  R  T  F  L  S  F  H  I  L  F  L  V  P  T  V  R  G  G  F  R  I  *  T  *  H  V  Q  P  L  R  F  L  S  L  N  T  L  I  Y  R  T  Y  V  F  R  F  *  Y  S  L  I  L  V  L  S  H  I  Y  L  F  P  V  L  Y  G  P  S  T  E  V  N  F  S  V  G  R  S  T  N  S  N  Y  L  S  N  I  S  H  F  L  C  *  R  K  L  E  S  S  *  K  M  T  S  *  D  N  N  Y  L  A  K  *  P  Y  E  K  S  I  R  L  C  R  Q  L  Q  L  V  *  T  P  S  L  T  *  A  C  T  I  M  Y  L  L  N  Q  I  F  P  G  K  V  M  Y  N  V  A  V  C  *  F  A  *  E  A  Q  *  *  T  C  S  T  *  D  L  G  *  G  K  A  L  R  T  S  C  K  *  R  N  T  N  A  H  S  S  F  Q  I  L  C  W  L  R  K  *  E  K  W  R  Y  V  S  F  *  Q  F  N  N  H  L  L  Y  I  N  *  R  S  N  V  C  *  I  T  L  N  A  F  L  S  I  S  A  Y  I  S  Y  S  G  W  A  D  K  I  H  G  L  T  A  P  A  D  S  L  H  H  V  Q  T  L  H  E  P  I  G  V  A  G  Q  I  I  P  W  N  F  P  L  L  M  F  A  W  K  V  G  P  A  L  A  C  G  N  T  V  V  L  K  P  A  E  Q  T  P  L  S  A  L  Y  V  S  K  L  F  H  E  :  V  G  L  P  P  G  V  L  N  V  I  P  G  S  G  S  A  G  A  D  L  A  S  H  M  D  V  D  K  :  I  A  F  T  G  S  T  E  T  G  K  A  V  V  G  A  A  A  K  S  N  L  K  P  V  T  L  E  L  G  G  K  S  P  F  I  I  C  E  D  A  D  V  D  K  A  V  E  L  A  H  S  A  V  F  F  N  Q  :  G  Q  C  C  C  A  G  S  R  T  F  V  H  E  R  V  Y  D  E  F  V  E  K  A  K  A  R  A  L  K  R  I  V  G  D  P  F  K  K  G  V  E  Q  G  P  Q  :  I  D  T  E  Q  F  E  K  I  L  K  Y  I  K  S  G  T  E  S  G  A  T  L  E  S  G  G  E  K  L  G  S  K  G  F  Y  V  Q  P  T  V  F  S  N  V  Q  :  D  N  M  L  I  A  R  D  E  I  F  G  P  V  Q  S  L  L  K  F  K :   D  V  E  E  V  I  R  R  A  N  S  S  H  Y  G  L  A  A  G  V  F  T  Q  N  I  D  A  A  N  T  I  S  R  A  L  R  V  G  T  V  W  V  N  C  F  N  I  F  D  A  A  I  P  F  G  G  Y  K  M  S  G  H  G  R  E  K  G  V  Y  S  L  S  N  Y  L  Q  V  K  A  I  V  T  P  L  K  N  P  A  W  L  *  F  S  P  L  L  S  G  T  P  E  M  S  C  N  T  A  I  L  S  F  R  G  H  L  Y  T  V  *  I  R  P  K  R  C  I  V  C  V  L  L  F  V  T  N  F  L  *  F  D  N  N  M  Q  T  C  L  C  E  T  F  L  D  F  C  S  S  D  A  K  *  D  L  V  F  E  F  C  G  N  V  M  N  Y  I  *  M  *  C  Y  N  S  I  L  L  R  Y  I </second_frame>
            <third_frame>   F  *  M  L  S  L  Y  V  N  I  M  L  C  M  K  *  R  S  S  K  I  S  V  S  N  F  E  N  F   : F  R  Y  S  N  Y  W  R  K  G  I  R  R  F  C  S  S  A  V  V  H  E  E  P  I  T  P  P  V  E  V  K  Y  N  Q  L  L  I  N  G  Q  F  V  D  A  A  S   : G  K  T  F  P  T  F  D  P  R  T  G  E  A  I  T  T  V  A  E  A  D  T  E  D  V  N  R  A  V  F  A  A  R  K  A  F  D  E  G  P  W  P  K  M  T  C  A  V  T  E  L  S  Y  L  S  I  S  S  S  L  S  Q  Q  *  E  A  D  L  E  F  E  L  N  M  F  N  L  *  G  S  Y  R  *  T  H  *  S  I  G  H  T  C  L  D  F  N  I  L  S  F  *  Y  F  H  I  Y  I  Y  F  L  Y  Y  M  V  P  L  P  K  L  I  S  Q  L  V  V  Q  L  I  V  I  I  *  V  I  *  V  T  F  F  V  E  E  N  W  N  Q  V  E  K  *  L  L  E  I  I  T  I  *  Q  S  D  H  M  R  N  Q  S  A  S  A  D  N  Y  S  L  F  K  L  P  V  L  L  K  H  V  Q  *  C  T  Y  L  T  K  Y  F  Q  E  R  S  C  I  M  L  Q  F  A  D  L  L  E  R  H  S  D  E  L  A  A  L  E  T  W  D  K  G  K  P  Y  E  Q  A  A  N  E  E  I  P  M  L  I  R  L  F  R  Y  Y  A  G  *  E  N  K  K  N  G  V  M  F  P  F  D  S  L  I  T  T  Y  C  I  S  I  D  V  L  M  F  A  E  S  P  *  M  L  F  *  V  F  L  L  T  F  L  I  Q  V  G  L  I  K  F  M  V  L  Q  L  L  L  T  V  C  T  M  F  R  P  C  M  S  Q  L  V  L  Q  D  R  *  Y  P  G  I  F  R  Y  *  C  S  P  G  K  L  A  L  H  L  L  V  V  T  L  S  Y  *  N  Q  Q  N  K  H  H  S  L  P  C  M  C  Q  S  Y  S  M  R :   L  D  F  P  L  E  S  *  M  S  F  L  D  P  V  V  Q  V  Q  I  L  P  V  I  W  M  S  I  R :   L  L  L  Q  G  P  Q  K  L  V  K  L  S  *  V  Q  L  Q  R  A  T  *  N  L  *  H  W  S  S  E  E  N  L  L  S  S  F  V  K  M  Q  T  L  I  K  L  L  S  W  L  I  L  L  F  S  L  T  R :   D  N  A  A  V  L  D  L  G  H  S  Y  M  K  E  Y  M  M  N  L  W  R  K  P  K  L  V  L  *  N  A  L  L  E  T  L  S  R  R  E  L  N  K  V  R  R :   L  I  Q  S  N  L  R  R  S  *  S  T  *  N  L  V  L  K  A  G  L  L  S  S  L  E  G  K  N  W  V  P  R  A  S  M  S  N  L  L  S  S  Q  M  S  R :   I  T  C  *  L  P  E  M  R  Y  L  D  Q  C  S  P  S  *  N  S   : R  M  L  K  R  S  S  E  G  Q  T  R  H  I  M  G  W  Q  R  V  F  L  P  R  I  *  M  Q  P  T  Q  Y  L  E  P  L  E  *  G  Q  C  G  L  T  A  L  T  S  L  M  L  P  F  R  L  V  V  I  R  *  V  D  M  E  E  R  R  E  S  T  A  *  V  T  T  C  K  S  K  L  L  L  P  L  *  R  I  Q  H  G  C  S  F  P  P  C  F  L  V  L  L  R  C  R  A  T  R  Q  S  C  L  L  E  V  T  C  I  Q  C  R  *  D  Q  N  A  V  L  C  V  C  Y  C  L  L  L  T  S  Y  D  L  I  T  I  C  K  L  V  C  V  R  P  F  L  I  S  V  A  L  M  Q  N  R  I  L  C  L  S  F  V  G  M  *  *  I  I  Y  R  C  N  V  I  I  L  Y  Y  Y  G  I   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02HBa0236E02.1" strand="-"/>
                <serials PGL_serial="21" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="120314" stop="120036"/>
                    <exon start="119816" stop="119730"/>
                    <exon start="119086" stop="118913"/>
                    <exon start="118833" stop="118696"/>
                    <exon start="118415" stop="118278"/>
                    <exon start="118168" stop="118107"/>
                    <exon start="118027" stop="117754"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>1149</number_coding_nucleotides>
                  <number_encoded_amino_acids>383</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>ITLNAFLSISAYISYSGWADKIHGLTAPADSLHHVQTLHEPIGVAGQIIPWNFPLLMFAWKVGPALACGNTVVLKPAEQTPLSALYVSKLFHEVGLPPGVLNVIPGSGSAGADLASHMDVDKIAFTGSTETGKAVVGAAAKSNLKPVTLELGGKSPFIICEDADVDKAVELAHSAVFFNQGQCCCAGSRTFVHERVYDEFVEKAKARALKRIVGDPFKKGVEQGPQIDTEQFEKILKYIKSGTESGATLESGGEKLGSKGFYVQPTVFSNVQDNMLIARDEIFGPVQSLLKFKDVEEVIRRANSSHYGLAAGVFTQNIDAANTISRALRVGTVWVNCFNIFDAAIPFGGYKMSGHGREKGVYSLSNYLQVKAIVTPLKNPAWL*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C02HBa0236E02.1" strand="-"/>
                <serials PGL_serial="21" AGS_serial="1" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="123091" stop="123052"/>
                    <exon start="121369" stop="121229"/>
                    <exon start="121149" stop="120956"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>372</number_coding_nucleotides>
                  <number_encoded_amino_acids>124</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>RSSKISVSNFENFFRYSNYWRKGIRRFCSSAVVHEEPITPPVEVKYNQLLINGQFVDAASGKTFPTFDPRTGEAITTVAEADTEDVNRAVFAARKAFDEGPWPKMTCAVTELSYLSISSSLSQQ*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="2">
          <exon_coordinates>
            <exon e_start="123141" e_stop="123052"/>
            <exon e_start="121369" e_stop="121229"/>
            <exon e_start="121149" e_stop="120036"/>
            <exon e_start="119816" e_stop="119730"/>
            <exon e_start="119086" e_stop="118913"/>
            <exon e_start="118833" e_stop="118704"/>
            <exon e_start="118415" e_stop="118278"/>
            <exon e_start="118168" e_stop="118107"/>
            <exon e_start="118027" e_stop="117463"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.000" acc_prob="0.901" e_score="1.000"/>
          <exon-intron don_prob="0.986" acc_prob="0.750" e_score="1.000"/>
          <exon-intron don_prob="0.959" acc_prob="0.980" e_score="0.987"/>
          <exon-intron don_prob="0.996" acc_prob="1.000" e_score="1.000"/>
          <exon-intron don_prob="0.933" acc_prob="0.857" e_score="1.000"/>
          <exon-intron don_prob="0.597" acc_prob="0.996" e_score="1.000"/>
          <exon-intron don_prob="0.961" acc_prob="0.997" e_score="1.000"/>
          <exon-intron don_prob="0.995" acc_prob="0.920" e_score="1.000"/>
          <exon-only e_score="0.977"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="123141" e_stop="123052" e_length="90"/>
          </exon>
          <intron i_serial="1" don_prob="0.000" acc_prob="0.901">
            <gDNA_intron_boundary i_start="123051" i_stop="121370" i_length="1682"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="121369" e_stop="121229" e_length="141"/>
          </exon>
          <intron i_serial="2" don_prob="0.986" acc_prob="0.750">
            <gDNA_intron_boundary i_start="121228" i_stop="121150" i_length="79"/>
          </intron>
          <exon e_serial="3" e_score="0.987">
            <gDNA_exon_boundary e_start="121149" e_stop="120036" e_length="1114"/>
          </exon>
          <intron i_serial="3" don_prob="0.959" acc_prob="0.980">
            <gDNA_intron_boundary i_start="120035" i_stop="119817" i_length="219"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="119816" e_stop="119730" e_length="87"/>
          </exon>
          <intron i_serial="4" don_prob="0.996" acc_prob="1.000">
            <gDNA_intron_boundary i_start="119729" i_stop="119087" i_length="643"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="119086" e_stop="118913" e_length="174"/>
          </exon>
          <intron i_serial="5" don_prob="0.933" acc_prob="0.857">
            <gDNA_intron_boundary i_start="118912" i_stop="118834" i_length="79"/>
          </intron>
          <exon e_serial="6" e_score="1.000">
            <gDNA_exon_boundary e_start="118833" e_stop="118704" e_length="130"/>
          </exon>
          <intron i_serial="6" don_prob="0.597" acc_prob="0.996">
            <gDNA_intron_boundary i_start="118703" i_stop="118416" i_length="288"/>
          </intron>
          <exon e_serial="7" e_score="1.000">
            <gDNA_exon_boundary e_start="118415" e_stop="118278" e_length="138"/>
          </exon>
          <intron i_serial="7" don_prob="0.961" acc_prob="0.997">
            <gDNA_intron_boundary i_start="118277" i_stop="118169" i_length="109"/>
          </intron>
          <exon e_serial="8" e_score="1.000">
            <gDNA_exon_boundary e_start="118168" e_stop="118107" e_length="62"/>
          </exon>
          <intron i_serial="8" don_prob="0.995" acc_prob="0.920">
            <gDNA_intron_boundary i_start="118106" i_stop="118028" i_length="79"/>
          </intron>
          <exon e_serial="9" e_score="0.977">
            <gDNA_exon_boundary e_start="118027" e_stop="117463" e_length="565"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="123141" stop="123052"/>
              <exon start="121369" stop="121229"/>
              <exon start="121149" stop="120830"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E256721" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="123140" stop="123052"/>
              <exon start="121369" stop="121229"/>
              <exon start="121149" stop="120811"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E271992" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="123139" stop="123052"/>
              <exon start="121369" stop="121229"/>
              <exon start="121149" stop="120960"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E258160" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="123139" stop="123052"/>
              <exon start="121369" stop="121229"/>
              <exon start="121149" stop="121027"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E217486" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="121102" stop="120698"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E336972" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="121032" stop="120557"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E324375" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="120954" stop="120280"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E334199" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="120950" stop="120324"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E329876" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="120798" stop="120307"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E302285" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="120715" stop="120439"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E261296" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="120575" stop="120036"/>
              <exon start="119816" stop="119779"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E264189" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="120541" stop="120036"/>
              <exon start="119816" stop="119730"/>
              <exon start="119086" stop="118942"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E370665" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="120541" stop="120036"/>
              <exon start="119816" stop="119767"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E271439" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="120503" stop="120036"/>
              <exon start="119816" stop="119790"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E249362" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="120491" stop="120036"/>
              <exon start="119816" stop="119781"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E314892" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="120491" stop="120090"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E314995" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="120390" stop="120100"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E257422" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="120193" stop="120036"/>
              <exon start="119816" stop="119730"/>
              <exon start="119086" stop="118913"/>
              <exon start="118833" stop="118725"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E249288" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="120149" stop="120036"/>
              <exon start="119816" stop="119730"/>
              <exon start="119086" stop="118913"/>
              <exon start="118833" stop="118738"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E275091" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="118769" stop="118704"/>
              <exon start="118415" stop="118278"/>
              <exon start="118168" stop="118107"/>
              <exon start="118027" stop="117775"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E271494" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="118764" stop="118704"/>
              <exon start="118415" stop="118278"/>
              <exon start="118168" stop="118107"/>
              <exon start="118027" stop="117796"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E245692" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="118376" stop="118278"/>
              <exon start="118168" stop="118107"/>
              <exon start="118027" stop="117694"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E264163" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="118348" stop="118278"/>
              <exon start="118168" stop="118107"/>
              <exon start="118027" stop="117463"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E355126" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="118348" stop="118278"/>
              <exon start="118168" stop="118107"/>
              <exon start="118027" stop="117463"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E349395" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="118167" stop="118107"/>
              <exon start="118027" stop="117517"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E202862" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="118167" stop="118107"/>
              <exon start="118027" stop="117726"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E281400" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="118135" stop="118107"/>
              <exon start="118027" stop="117585"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E733861" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="118026" stop="117610"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E256282" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="21" AGS_serial="2" gDNA_strand="-"/>
          <translation>
            <gDNA_template>AATTTTGAATGCTCTCTCTTTATGTAAACATTATGCTTTGTATGAAATAAAGGTCCTCTAAGATTTCTGTAAGCAACTTTGAAAATTTCT : TTAGGTACTCCAACTACTGGAGAAAGGGTATCAGAAGGTTTTGTAGCAGTGCCGTGGTGCATGAAGAGCCAATCACTCCACCTGTTGAGGTTAAATATAATCAGCTTCTCATTAATGGACAGTTTGTTGATGCAGCCTCAG : GGAAGACATTTCCTACATTTGACCCTCGAACAGGCGAAGCTATTACTACGGTTGCGGAGGCCGACACTGAAGATGTCAACCGTGCAGTCTTTGCTGCCCGTAAAGCATTTGATGAAGGACCATGGCCTAAAATGACTTGTGCAGTAACCGAACTTTCTTATCTTTCCATATCCTCTTCCTTGTCCCAACAGTGAGAGGCGGATTTAGAATTTGAACTTAACATGTTCAACCTTTAAGGTTCTTATCGCTGAACACATTGATCTATCGGACATACGTGTTTAGATTTTAATATTCTCTCATTTTAGTACTTTCACATATATATTTATTTCCTGTATTATATGGTCCCTCTACCGAAGTTAATTTCTCAGTTGGTCGTTCAACTAATAGTAATTATTTGAGTAATATAAGTCACTTTCTTTGTTGAAGAAAATTGGAATCAAGTTGAAAAATGACTTCTTGAGATAATAACTATTTAGCAAAGTGACCATATGAGAAATCAATCCGCCTCTGCAGACAACTACAGCTTGTTTAAACTCCCAGTCTTACTTAAGCATGTACAATAATGTACTTACTTAACCAAATATTTCCAGGAAAGGTCATGTATAATGTTGCAGTTTGCTGATTTGCTTGAGAGGCACAGTGATGAACTTGCAGCACTTGAGACTTGGGATAAGGGAAAGCCTTACGAACAAGCTGCAAATGAAGAAATACCAATGCTCATTCGTCTTTTCAGATACTATGCTGGTTAAGAAAATAAGAAAAATGGCGTTATGTTTCCTTTTGACAGTTTAATAACCACTTATTGTATATCAATTGACGTTCTAATGTTTGCTGAATCACCCTAAATGCTTTTCTAAGTATTTCTGCTTACATTTCTTATTCAGGTTGGGCTGATAAAATTCATGGTCTTACAGCTCCTGCTGACAGTTTGCACCATGTTCAGACCCTGCATGAGCCAATTGGTGTTGCAGGACAGATAATACCCTGGAATTTTCCGTTATTAATGTTCGCCTGGAAAGTTGGCCCTGCACTTGCTTGTGGTAACACTGTCGTACTAAAACCAGCAGAACAAACACCACTCTCTGCCCTGTATGTGTCAAAGTTATTCCATGAG : GTTGGACTTCCCCCTGGAGTCTTAAATGTCATTCCTGGATCCGGTAGTGCAGGTGCAGATCTTGCCAGTCATATGGATGTCGATAAG : ATTGCTTTTACAGGGTCCACAGAAACTGGTAAAGCTGTCGTAGGTGCAGCTGCAAAGAGCAACCTAAAACCTGTGACATTGGAGCTCGGAGGAAAATCTCCTTTCATCATTTGTGAAGATGCAGACGTTGATAAAGCTGTTGAGTTGGCTCATTCTGCTGTTTTCTTTAACCAG : GGACAATGCTGCTGTGCTGGATCTCGGACATTCGTACATGAAAGAGTATATGATGAATTTGTGGAGAAAGCCAAAGCTCGTGCTTTAAAACGCATTGTTGGAGACCCTTTCAAGAAGGGAGTTGAACAAG : ATTGATACAGAGCAATTTGAGAAGATCCTGAAGTACATAAAATCTGGTACTGAAAGCGGGGCTACTCTCGAGTCTGGAGGGGAAAAATTGGGTTCCAAGGGCTTCTATGTCCAACCTACTGTCTTCTCAAATGTCCAG : GATAACATGCTGATTGCCAGAGATGAGATATTTGGACCAGTGCAGTCCCTCTTGAAATTCAA : GGATGTTGAAGAGGTCATCCGAAGGGCAAACTCGTCACATTATGGGTTGGCAGCGGGTGTTTTTACCCAGAATATAGATGCAGCCAACACAATATCTCGAGCCCTTAGAGTAGGGACAGTGTGGGTTAACTGCTTTAACATCTTTGATGCTGCCATTCCGTTTGGTGGTTATAAGATGAGTGGACATGGAAGAGAGAAGGGAGTCTACAGCCTAAGTAACTACTTGCAAGTCAAAGCTATTGTTACCCCTCTGAAGAATCCAGCATGGCTGTAGTTTTCCCCCCTGCTTTCTGGTACTCCTGAGATGTCGTGCAACACGGCAATCTTGTCTTTTAGAGGTCACTTGTATACAGTGTAGATAAGACCAAAACGCTGTATTGTGTGTGTGTTATTGTTTGTTACTAACTTCTTATGATTTGATAACAATATGCAAACTTGTTTGTGTGAGACCTTTCTTGATTTCTGTAGCTCTGATGCAAAATAGGATCTTGTGTTTGAGTTTTGTGGGAATGTAATGAATTATATATAGATGTAATGTTATAATTCTATATTACTACGGTATATA</gDNA_template>
            <first_frame> N  F  E  C  S  L  F  M  *  T  L  C  F  V  *  N  K  G  P  L  R  F  L  *  A  T  L  K  I  S  :  L  G  T  P  T  T  G  E  R  V  S  E  G  F  V  A  V  P  W  C  M  K  S  Q  S  L  H  L  L  R  L  N  I  I  S  F  S  L  M  D  S  L  L  M  Q  P  Q  :  G  R  H  F  L  H  L  T  L  E  Q  A  K  L  L  L  R  L  R  R  P  T  L  K  M  S  T  V  Q  S  L  L  P  V  K  H  L  M  K  D  H  G  L  K  *  L  V  Q  *  P  N  F  L  I  F  P  Y  P  L  P  C  P  N  S  E  R  R  I  *  N  L  N  L  T  C  S  T  F  K  V  L  I  A  E  H  I  D  L  S  D  I  R  V  *  I  L  I  F  S  H  F  S  T  F  T  Y  I  F  I  S  C  I  I  W  S  L  Y  R  S  *  F  L  S  W  S  F  N  *  *  *  L  F  E  *  Y  K  S  L  S  L  L  K  K  I  G  I  K  L  K  N  D  F  L  R  *  *  L  F  S  K  V  T  I  *  E  I  N  P  P  L  Q  T  T  T  A  C  L  N  S  Q  S  Y  L  S  M  Y  N  N  V  L  T  *  P  N  I  S  R  K  G  H  V  *  C  C  S  L  L  I  C  L  R  G  T  V  M  N  L  Q  H  L  R  L  G  I  R  E  S  L  T  N  K  L  Q  M  K  K  Y  Q  C  S  F  V  F  S  D  T  M  L  V  K  K  I  R  K  M  A  L  C  F  L  L  T  V  *  *  P  L  I  V  Y  Q  L  T  F  *  C  L  L  N  H  P  K  C  F  S  K  Y  F  C  L  H  F  L  F  R  L  G  *  *  N  S  W  S  Y  S  S  C  *  Q  F  A  P  C  S  D  P  A  *  A  N  W  C  C  R  T  D  N  T  L  E  F  S  V  I  N  V  R  L  E  S  W  P  C  T  C  L  W  *  H  C  R  T  K  T  S  R  T  N  T  T  L  C  P  V  C  V  K  V  I  P  *   : G  W  T  S  P  W  S  L  K  C  H  S  W  I  R  *  C  R  C  R  S  C  Q  S  Y  G  C  R  *   : D  C  F  Y  R  V  H  R  N  W  *  S  C  R  R  C  S  C  K  E  Q  P  K  T  C  D  I  G  A  R  R  K  I  S  F  H  H  L  *  R  C  R  R  *  *  S  C  *  V  G  S  F  C  C  F  L  *  P   : G  T  M  L  L  C  W  I  S  D  I  R  T  *  K  S  I  *  *  I  C  G  E  S  Q  S  S  C  F  K  T  H  C  W  R  P  F  Q  E  G  S  *  T  R :   L  I  Q  S  N  L  R  R  S  *  S  T  *  N  L  V  L  K  A  G  L  L  S  S  L  E  G  K  N  W  V  P  R  A  S  M  S  N  L  L  S  S  Q  M  S  R :   I  T  C  *  L  P  E  M  R  Y  L  D  Q  C  S  P  S  *  N  S   : R  M  L  K  R  S  S  E  G  Q  T  R  H  I  M  G  W  Q  R  V  F  L  P  R  I  *  M  Q  P  T  Q  Y  L  E  P  L  E  *  G  Q  C  G  L  T  A  L  T  S  L  M  L  P  F  R  L  V  V  I  R  *  V  D  M  E  E  R  R  E  S  T  A  *  V  T  T  C  K  S  K  L  L  L  P  L  *  R  I  Q  H  G  C  S  F  P  P  C  F  L  V  L  L  R  C  R  A  T  R  Q  S  C  L  L  E  V  T  C  I  Q  C  R  *  D  Q  N  A  V  L  C  V  C  Y  C  L  L  L  T  S  Y  D  L  I  T  I  C  K  L  V  C  V  R  P  F  L  I  S  V  A  L  M  Q  N  R  I  L  C  L  S  F  V  G  M  *  *  I  I  Y  R  C  N  V  I  I  L  Y  Y  Y  G  I   </first_frame>
            <second_frame>  I  L  N  A  L  S  L  C  K  H  Y  A  L  Y  E  I  K  V  L  *  D  F  C  K  Q  L  *  K  F  L :   *  V  L  Q  L  L  E  K  G  Y  Q  K  V  L  *  Q  C  R  G  A  *  R  A  N  H  S  T  C  *  G  *  I  *  S  A  S  H  *  W  T  V  C  *  C  S  L  R :   E  D  I  S  Y  I  *  P  S  N  R  R  S  Y  Y  Y  G  C  G  G  R  H  *  R  C  Q  P  C  S  L  C  C  P  *  S  I  *  *  R  T  M  A  *  N  D  L  C  S  N  R  T  F  L  S  F  H  I  L  F  L  V  P  T  V  R  G  G  F  R  I  *  T  *  H  V  Q  P  L  R  F  L  S  L  N  T  L  I  Y  R  T  Y  V  F  R  F  *  Y  S  L  I  L  V  L  S  H  I  Y  L  F  P  V  L  Y  G  P  S  T  E  V  N  F  S  V  G  R  S  T  N  S  N  Y  L  S  N  I  S  H  F  L  C  *  R  K  L  E  S  S  *  K  M  T  S  *  D  N  N  Y  L  A  K  *  P  Y  E  K  S  I  R  L  C  R  Q  L  Q  L  V  *  T  P  S  L  T  *  A  C  T  I  M  Y  L  L  N  Q  I  F  P  G  K  V  M  Y  N  V  A  V  C  *  F  A  *  E  A  Q  *  *  T  C  S  T  *  D  L  G  *  G  K  A  L  R  T  S  C  K  *  R  N  T  N  A  H  S  S  F  Q  I  L  C  W  L  R  K  *  E  K  W  R  Y  V  S  F  *  Q  F  N  N  H  L  L  Y  I  N  *  R  S  N  V  C  *  I  T  L  N  A  F  L  S  I  S  A  Y  I  S  Y  S  G  W  A  D  K  I  H  G  L  T  A  P  A  D  S  L  H  H  V  Q  T  L  H  E  P  I  G  V  A  G  Q  I  I  P  W  N  F  P  L  L  M  F  A  W  K  V  G  P  A  L  A  C  G  N  T  V  V  L  K  P  A  E  Q  T  P  L  S  A  L  Y  V  S  K  L  F  H  E  :  V  G  L  P  P  G  V  L  N  V  I  P  G  S  G  S  A  G  A  D  L  A  S  H  M  D  V  D  K  :  I  A  F  T  G  S  T  E  T  G  K  A  V  V  G  A  A  A  K  S  N  L  K  P  V  T  L  E  L  G  G  K  S  P  F  I  I  C  E  D  A  D  V  D  K  A  V  E  L  A  H  S  A  V  F  F  N  Q  :  G  Q  C  C  C  A  G  S  R  T  F  V  H  E  R  V  Y  D  E  F  V  E  K  A  K  A  R  A  L  K  R  I  V  G  D  P  F  K  K  G  V  E  Q   : D  *  Y  R  A  I  *  E  D  P  E  V  H  K  I  W  Y  *  K  R  G  Y  S  R  V  W  R  G  K  I  G  F  Q  G  L  L  C  P  T  Y  C  L  L  K  C  P   : G  *  H  A  D  C  Q  R  *  D  I  W  T  S  A  V  P  L  E  I  Q  :  G  C  *  R  G  H  P  K  G  K  L  V  T  L  W  V  G  S  G  C  F  Y  P  E  Y  R  C  S  Q  H  N  I  S  S  P  *  S  R  D  S  V  G  *  L  L  *  H  L  *  C  C  H  S  V  W  W  L  *  D  E  W  T  W  K  R  E  G  S  L  Q  P  K  *  L  L  A  S  Q  S  Y  C  Y  P  S  E  E  S  S  M  A  V  V  F  P  P  A  F  W  Y  S  *  D  V  V  Q  H  G  N  L  V  F  *  R  S  L  V  Y  S  V  D  K  T  K  T  L  Y  C  V  C  V  I  V  C  Y  *  L  L  M  I  *  *  Q  Y  A  N  L  F  V  *  D  L  S  *  F  L  *  L  *  C  K  I  G  S  C  V  *  V  L  W  E  C  N  E  L  Y  I  D  V  M  L  *  F  Y  I  T  T  V  Y  </second_frame>
            <third_frame>   F  *  M  L  S  L  Y  V  N  I  M  L  C  M  K  *  R  S  S  K  I  S  V  S  N  F  E  N  F   : F  R  Y  S  N  Y  W  R  K  G  I  R  R  F  C  S  S  A  V  V  H  E  E  P  I  T  P  P  V  E  V  K  Y  N  Q  L  L  I  N  G  Q  F  V  D  A  A  S   : G  K  T  F  P  T  F  D  P  R  T  G  E  A  I  T  T  V  A  E  A  D  T  E  D  V  N  R  A  V  F  A  A  R  K  A  F  D  E  G  P  W  P  K  M  T  C  A  V  T  E  L  S  Y  L  S  I  S  S  S  L  S  Q  Q  *  E  A  D  L  E  F  E  L  N  M  F  N  L  *  G  S  Y  R  *  T  H  *  S  I  G  H  T  C  L  D  F  N  I  L  S  F  *  Y  F  H  I  Y  I  Y  F  L  Y  Y  M  V  P  L  P  K  L  I  S  Q  L  V  V  Q  L  I  V  I  I  *  V  I  *  V  T  F  F  V  E  E  N  W  N  Q  V  E  K  *  L  L  E  I  I  T  I  *  Q  S  D  H  M  R  N  Q  S  A  S  A  D  N  Y  S  L  F  K  L  P  V  L  L  K  H  V  Q  *  C  T  Y  L  T  K  Y  F  Q  E  R  S  C  I  M  L  Q  F  A  D  L  L  E  R  H  S  D  E  L  A  A  L  E  T  W  D  K  G  K  P  Y  E  Q  A  A  N  E  E  I  P  M  L  I  R  L  F  R  Y  Y  A  G  *  E  N  K  K  N  G  V  M  F  P  F  D  S  L  I  T  T  Y  C  I  S  I  D  V  L  M  F  A  E  S  P  *  M  L  F  *  V  F  L  L  T  F  L  I  Q  V  G  L  I  K  F  M  V  L  Q  L  L  L  T  V  C  T  M  F  R  P  C  M  S  Q  L  V  L  Q  D  R  *  Y  P  G  I  F  R  Y  *  C  S  P  G  K  L  A  L  H  L  L  V  V  T  L  S  Y  *  N  Q  Q  N  K  H  H  S  L  P  C  M  C  Q  S  Y  S  M  R :   L  D  F  P  L  E  S  *  M  S  F  L  D  P  V  V  Q  V  Q  I  L  P  V  I  W  M  S  I  R :   L  L  L  Q  G  P  Q  K  L  V  K  L  S  *  V  Q  L  Q  R  A  T  *  N  L  *  H  W  S  S  E  E  N  L  L  S  S  F  V  K  M  Q  T  L  I  K  L  L  S  W  L  I  L  L  F  S  L  T  R :   D  N  A  A  V  L  D  L  G  H  S  Y  M  K  E  Y  M  M  N  L  W  R  K  P  K  L  V  L  *  N  A  L  L  E  T  L  S  R  R  E  L  N  K  :  I  D  T  E  Q  F  E  K  I  L  K  Y  I  K  S  G  T  E  S  G  A  T  L  E  S  G  G  E  K  L  G  S  K  G  F  Y  V  Q  P  T  V  F  S  N  V  Q  :  D  N  M  L  I  A  R  D  E  I  F  G  P  V  Q  S  L  L  K  F  K :   D  V  E  E  V  I  R  R  A  N  S  S  H  Y  G  L  A  A  G  V  F  T  Q  N  I  D  A  A  N  T  I  S  R  A  L  R  V  G  T  V  W  V  N  C  F  N  I  F  D  A  A  I  P  F  G  G  Y  K  M  S  G  H  G  R  E  K  G  V  Y  S  L  S  N  Y  L  Q  V  K  A  I  V  T  P  L  K  N  P  A  W  L  *  F  S  P  L  L  S  G  T  P  E  M  S  C  N  T  A  I  L  S  F  R  G  H  L  Y  T  V  *  I  R  P  K  R  C  I  V  C  V  L  L  F  V  T  N  F  L  *  F  D  N  N  M  Q  T  C  L  C  E  T  F  L  D  F  C  S  S  D  A  K  *  D  L  V  F  E  F  C  G  N  V  M  N  Y  I  *  M  *  C  Y  N  S  I  L  L  R  Y  I </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02HBa0236E02.1" strand="-"/>
                <serials PGL_serial="21" AGS_serial="2" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="120314" stop="120036"/>
                    <exon start="119816" stop="119730"/>
                    <exon start="119086" stop="118913"/>
                    <exon start="118833" stop="118704"/>
                    <exon start="118415" stop="118411"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>672</number_coding_nucleotides>
                  <number_encoded_amino_acids>224</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>ITLNAFLSISAYISYSGWADKIHGLTAPADSLHHVQTLHEPIGVAGQIIPWNFPLLMFAWKVGPALACGNTVVLKPAEQTPLSALYVSKLFHEVGLPPGVLNVIPGSGSAGADLASHMDVDKIAFTGSTETGKAVVGAAAKSNLKPVTLELGGKSPFIICEDADVDKAVELAHSAVFFNQGQCCCAGSRTFVHERVYDEFVEKAKARALKRIVGDPFKKGVEQD*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C02HBa0236E02.1" strand="-"/>
                <serials PGL_serial="21" AGS_serial="2" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="123091" stop="123052"/>
                    <exon start="121369" stop="121229"/>
                    <exon start="121149" stop="120956"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>372</number_coding_nucleotides>
                  <number_encoded_amino_acids>124</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>RSSKISVSNFENFFRYSNYWRKGIRRFCSSAVVHEEPITPPVEVKYNQLLINGQFVDAASGKTFPTFDPRTGEAITTVAEADTEDVNRAVFAARKAFDEGPWPKMTCAVTELSYLSISSSLSQQ*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="3">
          <exon_coordinates>
            <exon e_start="123141" e_stop="123052"/>
            <exon e_start="121369" e_stop="121229"/>
            <exon e_start="121149" e_stop="120383"/>
            <exon e_start="120265" e_stop="120036"/>
            <exon e_start="119816" e_stop="119730"/>
            <exon e_start="119086" e_stop="118913"/>
            <exon e_start="118833" e_stop="118696"/>
            <exon e_start="118415" e_stop="118278"/>
            <exon e_start="118168" e_stop="118107"/>
            <exon e_start="118027" e_stop="117463"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.000" acc_prob="0.901" e_score="1.000"/>
          <exon-intron don_prob="0.986" acc_prob="0.750" e_score="1.000"/>
          <exon-intron don_prob="0.000" acc_prob="0.997" e_score="0.981"/>
          <exon-intron don_prob="0.959" acc_prob="0.980" e_score="1.000"/>
          <exon-intron don_prob="0.996" acc_prob="1.000" e_score="1.000"/>
          <exon-intron don_prob="0.933" acc_prob="0.857" e_score="1.000"/>
          <exon-intron don_prob="0.997" acc_prob="0.996" e_score="1.000"/>
          <exon-intron don_prob="0.961" acc_prob="0.997" e_score="1.000"/>
          <exon-intron don_prob="0.995" acc_prob="0.920" e_score="1.000"/>
          <exon-only e_score="0.998"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="123141" e_stop="123052" e_length="90"/>
          </exon>
          <intron i_serial="1" don_prob="0.000" acc_prob="0.901">
            <gDNA_intron_boundary i_start="123051" i_stop="121370" i_length="1682"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="121369" e_stop="121229" e_length="141"/>
          </exon>
          <intron i_serial="2" don_prob="0.986" acc_prob="0.750">
            <gDNA_intron_boundary i_start="121228" i_stop="121150" i_length="79"/>
          </intron>
          <exon e_serial="3" e_score="0.981">
            <gDNA_exon_boundary e_start="121149" e_stop="120383" e_length="767"/>
          </exon>
          <intron i_serial="3" don_prob="0.000" acc_prob="0.997">
            <gDNA_intron_boundary i_start="120382" i_stop="120266" i_length="117"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="120265" e_stop="120036" e_length="230"/>
          </exon>
          <intron i_serial="4" don_prob="0.959" acc_prob="0.980">
            <gDNA_intron_boundary i_start="120035" i_stop="119817" i_length="219"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="119816" e_stop="119730" e_length="87"/>
          </exon>
          <intron i_serial="5" don_prob="0.996" acc_prob="1.000">
            <gDNA_intron_boundary i_start="119729" i_stop="119087" i_length="643"/>
          </intron>
          <exon e_serial="6" e_score="1.000">
            <gDNA_exon_boundary e_start="119086" e_stop="118913" e_length="174"/>
          </exon>
          <intron i_serial="6" don_prob="0.933" acc_prob="0.857">
            <gDNA_intron_boundary i_start="118912" i_stop="118834" i_length="79"/>
          </intron>
          <exon e_serial="7" e_score="1.000">
            <gDNA_exon_boundary e_start="118833" e_stop="118696" e_length="138"/>
          </exon>
          <intron i_serial="7" don_prob="0.997" acc_prob="0.996">
            <gDNA_intron_boundary i_start="118695" i_stop="118416" i_length="280"/>
          </intron>
          <exon e_serial="8" e_score="1.000">
            <gDNA_exon_boundary e_start="118415" e_stop="118278" e_length="138"/>
          </exon>
          <intron i_serial="8" don_prob="0.961" acc_prob="0.997">
            <gDNA_intron_boundary i_start="118277" i_stop="118169" i_length="109"/>
          </intron>
          <exon e_serial="9" e_score="1.000">
            <gDNA_exon_boundary e_start="118168" e_stop="118107" e_length="62"/>
          </exon>
          <intron i_serial="9" don_prob="0.995" acc_prob="0.920">
            <gDNA_intron_boundary i_start="118106" i_stop="118028" i_length="79"/>
          </intron>
          <exon e_serial="10" e_score="0.998">
            <gDNA_exon_boundary e_start="118027" e_stop="117463" e_length="565"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="123141" stop="123052"/>
              <exon start="121369" stop="121229"/>
              <exon start="121149" stop="120830"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E256721" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="123140" stop="123052"/>
              <exon start="121369" stop="121229"/>
              <exon start="121149" stop="120811"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E271992" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="123139" stop="123052"/>
              <exon start="121369" stop="121229"/>
              <exon start="121149" stop="120960"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E258160" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="123139" stop="123052"/>
              <exon start="121369" stop="121229"/>
              <exon start="121149" stop="121027"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E217486" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="121102" stop="120698"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E336972" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="121032" stop="120557"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E324375" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="120715" stop="120439"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E261296" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="120558" stop="120383"/>
              <exon start="120265" stop="120036"/>
              <exon start="119816" stop="119730"/>
              <exon start="119086" stop="119000"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E245989" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="120558" stop="120383"/>
              <exon start="120265" stop="120036"/>
              <exon start="119816" stop="119777"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E248945" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="120193" stop="120036"/>
              <exon start="119816" stop="119730"/>
              <exon start="119086" stop="118913"/>
              <exon start="118833" stop="118725"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E249288" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="120149" stop="120036"/>
              <exon start="119816" stop="119730"/>
              <exon start="119086" stop="118913"/>
              <exon start="118833" stop="118738"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E275091" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="120040" stop="120036"/>
              <exon start="119816" stop="119730"/>
              <exon start="119086" stop="118913"/>
              <exon start="118833" stop="118696"/>
              <exon start="118415" stop="118278"/>
              <exon start="118168" stop="118107"/>
              <exon start="118027" stop="117873"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E261730" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="119790" stop="119730"/>
              <exon start="119086" stop="118913"/>
              <exon start="118833" stop="118696"/>
              <exon start="118415" stop="118278"/>
              <exon start="118168" stop="118155"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E255543" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="119055" stop="118913"/>
              <exon start="118833" stop="118696"/>
              <exon start="118415" stop="118353"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E229381" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="119027" stop="118913"/>
              <exon start="118833" stop="118696"/>
              <exon start="118415" stop="118360"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E229740" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="118792" stop="118696"/>
              <exon start="118415" stop="118278"/>
              <exon start="118168" stop="118107"/>
              <exon start="118027" stop="117589"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E573825" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="118784" stop="118696"/>
              <exon start="118415" stop="118278"/>
              <exon start="118168" stop="118107"/>
              <exon start="118027" stop="117481"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E542978" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="118701" stop="118696"/>
              <exon start="118415" stop="118278"/>
              <exon start="118168" stop="118132"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E264242" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="118376" stop="118278"/>
              <exon start="118168" stop="118107"/>
              <exon start="118027" stop="117694"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E264163" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="118348" stop="118278"/>
              <exon start="118168" stop="118107"/>
              <exon start="118027" stop="117463"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E355126" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="118348" stop="118278"/>
              <exon start="118168" stop="118107"/>
              <exon start="118027" stop="117463"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E349395" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="118167" stop="118107"/>
              <exon start="118027" stop="117517"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E202862" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="118167" stop="118107"/>
              <exon start="118027" stop="117726"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E281400" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="118135" stop="118107"/>
              <exon start="118027" stop="117585"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E733861" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="118026" stop="117610"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E256282" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="21" AGS_serial="3" gDNA_strand="-"/>
          <translation>
            <gDNA_template>AATTTTGAATGCTCTCTCTTTATGTAAACATTATGCTTTGTATGAAATAAAGGTCCTCTAAGATTTCTGTAAGCAACTTTGAAAATTTCT : TTAGGTACTCCAACTACTGGAGAAAGGGTATCAGAAGGTTTTGTAGCAGTGCCGTGGTGCATGAAGAGCCAATCACTCCACCTGTTGAGGTTAAATATAATCAGCTTCTCATTAATGGACAGTTTGTTGATGCAGCCTCAG : GGAAGACATTTCCTACATTTGACCCTCGAACAGGCGAAGCTATTACTACGGTTGCGGAGGCCGACACTGAAGATGTCAACCGTGCAGTCTTTGCTGCCCGTAAAGCATTTGATGAAGGACCATGGCCTAAAATGACTTGTGCAGTAACCGAACTTTCTTATCTTTCCATATCCTCTTCCTTGTCCCAACAGTGAGAGGCGGATTTAGAATTTGAACTTAACATGTTCAACCTTTAAGGTTCTTATCGCTGAACACATTGATCTATCGGACATACGTGTTTAGATTTTAATATTCTCTCATTTTAGTACTTTCACATATATATTTATTTCCTGTATTATATGGTCCCTCTACCGAAGTTAATTTCTCAGTTGGTCGTTCAACTAATAGTAATTATTTGAGTAATATAAGTCACTTTCTTTGTTGAAGAAAATTGGAATCAAGTTGAAAAATGACTTCTTGAGATAATAACTATTTAGCAAAGTGACCATATGAGAAATCAATCCGCCTCTGCAGACAACTACAGCTTGTTTAAACTCCCAGTCTTACTTAAGCATGTACAATAATGTACTTACTTAACCAAATATTTCCAGGAAAGGTCATGTATAATGTTGCAGTTTGCTGATTTGCTTGAGAGGCACAGTGATGAACTTGCAGCACTTGAGACTTGGGATAAGGGAAAGCCTTACGAACAAGCTGCAAATGAAGAAATACCAATGCTCATTCGTCTTTTCAGATACTATGCTGGTTAAGAAAATAAGAAAAATGGC : GTTGGGCTGATAAAATTCATGGTCTTACAGCTCCTGCTGACAGTTTGCACCATGTTCAGACCCTGCATGAGCCAATTGGTGTTGCAGGACAGATAATACCCTGGAATTTTCCGTTATTAATGTTCGCCTGGAAAGTTGGCCCTGCACTTGCTTGTGGTAACACTGTCGTACTAAAACCAGCAGAACAAACACCACTCTCTGCCCTGTATGTGTCAAAGTTATTCCATGAG : GTTGGACTTCCCCCTGGAGTCTTAAATGTCATTCCTGGATCCGGTAGTGCAGGTGCAGATCTTGCCAGTCATATGGATGTCGATAAG : ATTGCTTTTACAGGGTCCACAGAAACTGGTAAAGCTGTCGTAGGTGCAGCTGCAAAGAGCAACCTAAAACCTGTGACATTGGAGCTCGGAGGAAAATCTCCTTTCATCATTTGTGAAGATGCAGACGTTGATAAAGCTGTTGAGTTGGCTCATTCTGCTGTTTTCTTTAACCAG : GGACAATGCTGCTGTGCTGGATCTCGGACATTCGTACATGAAAGAGTATATGATGAATTTGTGGAGAAAGCCAAAGCTCGTGCTTTAAAACGCATTGTTGGAGACCCTTTCAAGAAGGGAGTTGAACAAGGTCCGCAG : ATTGATACAGAGCAATTTGAGAAGATCCTGAAGTACATAAAATCTGGTACTGAAAGCGGGGCTACTCTCGAGTCTGGAGGGGAAAAATTGGGTTCCAAGGGCTTCTATGTCCAACCTACTGTCTTCTCAAATGTCCAG : GATAACATGCTGATTGCCAGAGATGAGATATTTGGACCAGTGCAGTCCCTCTTGAAATTCAA : GGATGTTGAAGAGGTCATCCGAAGGGCAAACTCGTCACATTATGGGTTGGCAGCGGGTGTTTTTACCCAGAATATAGATGCAGCCAACACAATATCTCGAGCCCTTAGAGTAGGGACAGTGTGGGTTAACTGCTTTAACATCTTTGATGCTGCCATTCCGTTTGGTGGTTATAAGATGAGTGGACATGGAAGAGAGAAGGGAGTCTACAGCCTAAGTAACTACTTGCAAGTCAAAGCTATTGTTACCCCTCTGAAGAATCCAGCATGGCTGTAGTTTTCCCCCCTGCTTTCTGGTACTCCTGAGATGTCGTGCAACACGGCAATCTTGTCTTTTAGAGGTCACTTGTATACAGTGTAGATAAGACCAAAACGCTGTATTGTGTGTGTGTTATTGTTTGTTACTAACTTCTTATGATTTGATAACAATATGCAAACTTGTTTGTGTGAGACCTTTCTTGATTTCTGTAGCTCTGATGCAAAATAGGATCTTGTGTTTGAGTTTTGTGGGAATGTAATGAATTATATATAGATGTAATGTTATAATTCTATATTACTACGGTATATA</gDNA_template>
            <first_frame> N  F  E  C  S  L  F  M  *  T  L  C  F  V  *  N  K  G  P  L  R  F  L  *  A  T  L  K  I  S  :  L  G  T  P  T  T  G  E  R  V  S  E  G  F  V  A  V  P  W  C  M  K  S  Q  S  L  H  L  L  R  L  N  I  I  S  F  S  L  M  D  S  L  L  M  Q  P  Q  :  G  R  H  F  L  H  L  T  L  E  Q  A  K  L  L  L  R  L  R  R  P  T  L  K  M  S  T  V  Q  S  L  L  P  V  K  H  L  M  K  D  H  G  L  K  *  L  V  Q  *  P  N  F  L  I  F  P  Y  P  L  P  C  P  N  S  E  R  R  I  *  N  L  N  L  T  C  S  T  F  K  V  L  I  A  E  H  I  D  L  S  D  I  R  V  *  I  L  I  F  S  H  F  S  T  F  T  Y  I  F  I  S  C  I  I  W  S  L  Y  R  S  *  F  L  S  W  S  F  N  *  *  *  L  F  E  *  Y  K  S  L  S  L  L  K  K  I  G  I  K  L  K  N  D  F  L  R  *  *  L  F  S  K  V  T  I  *  E  I  N  P  P  L  Q  T  T  T  A  C  L  N  S  Q  S  Y  L  S  M  Y  N  N  V  L  T  *  P  N  I  S  R  K  G  H  V  *  C  C  S  L  L  I  C  L  R  G  T  V  M  N  L  Q  H  L  R  L  G  I  R  E  S  L  T  N  K  L  Q  M  K  K  Y  Q  C  S  F  V  F  S  D  T  M  L  V  K  K  I  R  K  M  A :   L  G  *  *  N  S  W  S  Y  S  S  C  *  Q  F  A  P  C  S  D  P  A  *  A  N  W  C  C  R  T  D  N  T  L  E  F  S  V  I  N  V  R  L  E  S  W  P  C  T  C  L  W  *  H  C  R  T  K  T  S  R  T  N  T  T  L  C  P  V  C  V  K  V  I  P  *   : G  W  T  S  P  W  S  L  K  C  H  S  W  I  R  *  C  R  C  R  S  C  Q  S  Y  G  C  R  *   : D  C  F  Y  R  V  H  R  N  W  *  S  C  R  R  C  S  C  K  E  Q  P  K  T  C  D  I  G  A  R  R  K  I  S  F  H  H  L  *  R  C  R  R  *  *  S  C  *  V  G  S  F  C  C  F  L  *  P   : G  T  M  L  L  C  W  I  S  D  I  R  T  *  K  S  I  *  *  I  C  G  E  S  Q  S  S  C  F  K  T  H  C  W  R  P  F  Q  E  G  S  *  T  R  S  A   : D  *  Y  R  A  I  *  E  D  P  E  V  H  K  I  W  Y  *  K  R  G  Y  S  R  V  W  R  G  K  I  G  F  Q  G  L  L  C  P  T  Y  C  L  L  K  C  P   : G  *  H  A  D  C  Q  R  *  D  I  W  T  S  A  V  P  L  E  I  Q  :  G  C  *  R  G  H  P  K  G  K  L  V  T  L  W  V  G  S  G  C  F  Y  P  E  Y  R  C  S  Q  H  N  I  S  S  P  *  S  R  D  S  V  G  *  L  L  *  H  L  *  C  C  H  S  V  W  W  L  *  D  E  W  T  W  K  R  E  G  S  L  Q  P  K  *  L  L  A  S  Q  S  Y  C  Y  P  S  E  E  S  S  M  A  V  V  F  P  P  A  F  W  Y  S  *  D  V  V  Q  H  G  N  L  V  F  *  R  S  L  V  Y  S  V  D  K  T  K  T  L  Y  C  V  C  V  I  V  C  Y  *  L  L  M  I  *  *  Q  Y  A  N  L  F  V  *  D  L  S  *  F  L  *  L  *  C  K  I  G  S  C  V  *  V  L  W  E  C  N  E  L  Y  I  D  V  M  L  *  F  Y  I  T  T  V  Y  </first_frame>
            <second_frame>  I  L  N  A  L  S  L  C  K  H  Y  A  L  Y  E  I  K  V  L  *  D  F  C  K  Q  L  *  K  F  L :   *  V  L  Q  L  L  E  K  G  Y  Q  K  V  L  *  Q  C  R  G  A  *  R  A  N  H  S  T  C  *  G  *  I  *  S  A  S  H  *  W  T  V  C  *  C  S  L  R :   E  D  I  S  Y  I  *  P  S  N  R  R  S  Y  Y  Y  G  C  G  G  R  H  *  R  C  Q  P  C  S  L  C  C  P  *  S  I  *  *  R  T  M  A  *  N  D  L  C  S  N  R  T  F  L  S  F  H  I  L  F  L  V  P  T  V  R  G  G  F  R  I  *  T  *  H  V  Q  P  L  R  F  L  S  L  N  T  L  I  Y  R  T  Y  V  F  R  F  *  Y  S  L  I  L  V  L  S  H  I  Y  L  F  P  V  L  Y  G  P  S  T  E  V  N  F  S  V  G  R  S  T  N  S  N  Y  L  S  N  I  S  H  F  L  C  *  R  K  L  E  S  S  *  K  M  T  S  *  D  N  N  Y  L  A  K  *  P  Y  E  K  S  I  R  L  C  R  Q  L  Q  L  V  *  T  P  S  L  T  *  A  C  T  I  M  Y  L  L  N  Q  I  F  P  G  K  V  M  Y  N  V  A  V  C  *  F  A  *  E  A  Q  *  *  T  C  S  T  *  D  L  G  *  G  K  A  L  R  T  S  C  K  *  R  N  T  N  A  H  S  S  F  Q  I  L  C  W  L  R  K  *  E  K  W   : R  W  A  D  K  I  H  G  L  T  A  P  A  D  S  L  H  H  V  Q  T  L  H  E  P  I  G  V  A  G  Q  I  I  P  W  N  F  P  L  L  M  F  A  W  K  V  G  P  A  L  A  C  G  N  T  V  V  L  K  P  A  E  Q  T  P  L  S  A  L  Y  V  S  K  L  F  H  E  :  V  G  L  P  P  G  V  L  N  V  I  P  G  S  G  S  A  G  A  D  L  A  S  H  M  D  V  D  K  :  I  A  F  T  G  S  T  E  T  G  K  A  V  V  G  A  A  A  K  S  N  L  K  P  V  T  L  E  L  G  G  K  S  P  F  I  I  C  E  D  A  D  V  D  K  A  V  E  L  A  H  S  A  V  F  F  N  Q  :  G  Q  C  C  C  A  G  S  R  T  F  V  H  E  R  V  Y  D  E  F  V  E  K  A  K  A  R  A  L  K  R  I  V  G  D  P  F  K  K  G  V  E  Q  G  P  Q  :  I  D  T  E  Q  F  E  K  I  L  K  Y  I  K  S  G  T  E  S  G  A  T  L  E  S  G  G  E  K  L  G  S  K  G  F  Y  V  Q  P  T  V  F  S  N  V  Q  :  D  N  M  L  I  A  R  D  E  I  F  G  P  V  Q  S  L  L  K  F  K :   D  V  E  E  V  I  R  R  A  N  S  S  H  Y  G  L  A  A  G  V  F  T  Q  N  I  D  A  A  N  T  I  S  R  A  L  R  V  G  T  V  W  V  N  C  F  N  I  F  D  A  A  I  P  F  G  G  Y  K  M  S  G  H  G  R  E  K  G  V  Y  S  L  S  N  Y  L  Q  V  K  A  I  V  T  P  L  K  N  P  A  W  L  *  F  S  P  L  L  S  G  T  P  E  M  S  C  N  T  A  I  L  S  F  R  G  H  L  Y  T  V  *  I  R  P  K  R  C  I  V  C  V  L  L  F  V  T  N  F  L  *  F  D  N  N  M  Q  T  C  L  C  E  T  F  L  D  F  C  S  S  D  A  K  *  D  L  V  F  E  F  C  G  N  V  M  N  Y  I  *  M  *  C  Y  N  S  I  L  L  R  Y  I </second_frame>
            <third_frame>   F  *  M  L  S  L  Y  V  N  I  M  L  C  M  K  *  R  S  S  K  I  S  V  S  N  F  E  N  F   : F  R  Y  S  N  Y  W  R  K  G  I  R  R  F  C  S  S  A  V  V  H  E  E  P  I  T  P  P  V  E  V  K  Y  N  Q  L  L  I  N  G  Q  F  V  D  A  A  S   : G  K  T  F  P  T  F  D  P  R  T  G  E  A  I  T  T  V  A  E  A  D  T  E  D  V  N  R  A  V  F  A  A  R  K  A  F  D  E  G  P  W  P  K  M  T  C  A  V  T  E  L  S  Y  L  S  I  S  S  S  L  S  Q  Q  *  E  A  D  L  E  F  E  L  N  M  F  N  L  *  G  S  Y  R  *  T  H  *  S  I  G  H  T  C  L  D  F  N  I  L  S  F  *  Y  F  H  I  Y  I  Y  F  L  Y  Y  M  V  P  L  P  K  L  I  S  Q  L  V  V  Q  L  I  V  I  I  *  V  I  *  V  T  F  F  V  E  E  N  W  N  Q  V  E  K  *  L  L  E  I  I  T  I  *  Q  S  D  H  M  R  N  Q  S  A  S  A  D  N  Y  S  L  F  K  L  P  V  L  L  K  H  V  Q  *  C  T  Y  L  T  K  Y  F  Q  E  R  S  C  I  M  L  Q  F  A  D  L  L  E  R  H  S  D  E  L  A  A  L  E  T  W  D  K  G  K  P  Y  E  Q  A  A  N  E  E  I  P  M  L  I  R  L  F  R  Y  Y  A  G  *  E  N  K  K  N  G  :  V  G  L  I  K  F  M  V  L  Q  L  L  L  T  V  C  T  M  F  R  P  C  M  S  Q  L  V  L  Q  D  R  *  Y  P  G  I  F  R  Y  *  C  S  P  G  K  L  A  L  H  L  L  V  V  T  L  S  Y  *  N  Q  Q  N  K  H  H  S  L  P  C  M  C  Q  S  Y  S  M  R :   L  D  F  P  L  E  S  *  M  S  F  L  D  P  V  V  Q  V  Q  I  L  P  V  I  W  M  S  I  R :   L  L  L  Q  G  P  Q  K  L  V  K  L  S  *  V  Q  L  Q  R  A  T  *  N  L  *  H  W  S  S  E  E  N  L  L  S  S  F  V  K  M  Q  T  L  I  K  L  L  S  W  L  I  L  L  F  S  L  T  R :   D  N  A  A  V  L  D  L  G  H  S  Y  M  K  E  Y  M  M  N  L  W  R  K  P  K  L  V  L  *  N  A  L  L  E  T  L  S  R  R  E  L  N  K  V  R  R :   L  I  Q  S  N  L  R  R  S  *  S  T  *  N  L  V  L  K  A  G  L  L  S  S  L  E  G  K  N  W  V  P  R  A  S  M  S  N  L  L  S  S  Q  M  S  R :   I  T  C  *  L  P  E  M  R  Y  L  D  Q  C  S  P  S  *  N  S   : R  M  L  K  R  S  S  E  G  Q  T  R  H  I  M  G  W  Q  R  V  F  L  P  R  I  *  M  Q  P  T  Q  Y  L  E  P  L  E  *  G  Q  C  G  L  T  A  L  T  S  L  M  L  P  F  R  L  V  V  I  R  *  V  D  M  E  E  R  R  E  S  T  A  *  V  T  T  C  K  S  K  L  L  L  P  L  *  R  I  Q  H  G  C  S  F  P  P  C  F  L  V  L  L  R  C  R  A  T  R  Q  S  C  L  L  E  V  T  C  I  Q  C  R  *  D  Q  N  A  V  L  C  V  C  Y  C  L  L  L  T  S  Y  D  L  I  T  I  C  K  L  V  C  V  R  P  F  L  I  S  V  A  L  M  Q  N  R  I  L  C  L  S  F  V  G  M  *  *  I  I  Y  R  C  N  V  I  I  L  Y  Y  Y  G  I   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02HBa0236E02.1" strand="-"/>
                <serials PGL_serial="21" AGS_serial="3" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="120392" stop="120383"/>
                    <exon start="120265" stop="120036"/>
                    <exon start="119816" stop="119730"/>
                    <exon start="119086" stop="118913"/>
                    <exon start="118833" stop="118696"/>
                    <exon start="118415" stop="118278"/>
                    <exon start="118168" stop="118107"/>
                    <exon start="118027" stop="117754"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>1110</number_coding_nucleotides>
                  <number_encoded_amino_acids>370</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>EKWRWADKIHGLTAPADSLHHVQTLHEPIGVAGQIIPWNFPLLMFAWKVGPALACGNTVVLKPAEQTPLSALYVSKLFHEVGLPPGVLNVIPGSGSAGADLASHMDVDKIAFTGSTETGKAVVGAAAKSNLKPVTLELGGKSPFIICEDADVDKAVELAHSAVFFNQGQCCCAGSRTFVHERVYDEFVEKAKARALKRIVGDPFKKGVEQGPQIDTEQFEKILKYIKSGTESGATLESGGEKLGSKGFYVQPTVFSNVQDNMLIARDEIFGPVQSLLKFKDVEEVIRRANSSHYGLAAGVFTQNIDAANTISRALRVGTVWVNCFNIFDAAIPFGGYKMSGHGREKGVYSLSNYLQVKAIVTPLKNPAWL*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C02HBa0236E02.1" strand="-"/>
                <serials PGL_serial="21" AGS_serial="3" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="123091" stop="123052"/>
                    <exon start="121369" stop="121229"/>
                    <exon start="121149" stop="120956"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>372</number_coding_nucleotides>
                  <number_encoded_amino_acids>124</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>RSSKISVSNFENFFRYSNYWRKGIRRFCSSAVVHEEPITPPVEVKYNQLLINGQFVDAASGKTFPTFDPRTGEAITTVAEADTEDVNRAVFAARKAFDEGPWPKMTCAVTELSYLSISSSLSQQ*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="4">
          <exon_coordinates>
            <exon e_start="123139" e_stop="123052"/>
            <exon e_start="121369" e_stop="121229"/>
            <exon e_start="121149" e_stop="120913"/>
            <exon e_start="120559" e_stop="120036"/>
            <exon e_start="119816" e_stop="119730"/>
            <exon e_start="119086" e_stop="118913"/>
            <exon e_start="118833" e_stop="118696"/>
            <exon e_start="118415" e_stop="118278"/>
            <exon e_start="118168" e_stop="118107"/>
            <exon e_start="118027" e_stop="117463"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.000" acc_prob="0.901" e_score="1.000"/>
          <exon-intron don_prob="0.986" acc_prob="0.750" e_score="0.986"/>
          <exon-intron don_prob="0.177" acc_prob="0.922" e_score="1.000"/>
          <exon-intron don_prob="0.959" acc_prob="0.980" e_score="1.000"/>
          <exon-intron don_prob="0.996" acc_prob="1.000" e_score="1.000"/>
          <exon-intron don_prob="0.933" acc_prob="0.857" e_score="1.000"/>
          <exon-intron don_prob="0.997" acc_prob="0.996" e_score="1.000"/>
          <exon-intron don_prob="0.961" acc_prob="0.997" e_score="1.000"/>
          <exon-intron don_prob="0.995" acc_prob="0.920" e_score="1.000"/>
          <exon-only e_score="0.998"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="123139" e_stop="123052" e_length="88"/>
          </exon>
          <intron i_serial="1" don_prob="0.000" acc_prob="0.901">
            <gDNA_intron_boundary i_start="123051" i_stop="121370" i_length="1682"/>
          </intron>
          <exon e_serial="2" e_score="0.986">
            <gDNA_exon_boundary e_start="121369" e_stop="121229" e_length="141"/>
          </exon>
          <intron i_serial="2" don_prob="0.986" acc_prob="0.750">
            <gDNA_intron_boundary i_start="121228" i_stop="121150" i_length="79"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="121149" e_stop="120913" e_length="237"/>
          </exon>
          <intron i_serial="3" don_prob="0.177" acc_prob="0.922">
            <gDNA_intron_boundary i_start="120912" i_stop="120560" i_length="353"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="120559" e_stop="120036" e_length="524"/>
          </exon>
          <intron i_serial="4" don_prob="0.959" acc_prob="0.980">
            <gDNA_intron_boundary i_start="120035" i_stop="119817" i_length="219"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="119816" e_stop="119730" e_length="87"/>
          </exon>
          <intron i_serial="5" don_prob="0.996" acc_prob="1.000">
            <gDNA_intron_boundary i_start="119729" i_stop="119087" i_length="643"/>
          </intron>
          <exon e_serial="6" e_score="1.000">
            <gDNA_exon_boundary e_start="119086" e_stop="118913" e_length="174"/>
          </exon>
          <intron i_serial="6" don_prob="0.933" acc_prob="0.857">
            <gDNA_intron_boundary i_start="118912" i_stop="118834" i_length="79"/>
          </intron>
          <exon e_serial="7" e_score="1.000">
            <gDNA_exon_boundary e_start="118833" e_stop="118696" e_length="138"/>
          </exon>
          <intron i_serial="7" don_prob="0.997" acc_prob="0.996">
            <gDNA_intron_boundary i_start="118695" i_stop="118416" i_length="280"/>
          </intron>
          <exon e_serial="8" e_score="1.000">
            <gDNA_exon_boundary e_start="118415" e_stop="118278" e_length="138"/>
          </exon>
          <intron i_serial="8" don_prob="0.961" acc_prob="0.997">
            <gDNA_intron_boundary i_start="118277" i_stop="118169" i_length="109"/>
          </intron>
          <exon e_serial="9" e_score="1.000">
            <gDNA_exon_boundary e_start="118168" e_stop="118107" e_length="62"/>
          </exon>
          <intron i_serial="9" don_prob="0.995" acc_prob="0.920">
            <gDNA_intron_boundary i_start="118106" i_stop="118028" i_length="79"/>
          </intron>
          <exon e_serial="10" e_score="0.998">
            <gDNA_exon_boundary e_start="118027" e_stop="117463" e_length="565"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="123139" stop="123052"/>
              <exon start="121369" stop="121229"/>
              <exon start="121149" stop="120960"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E258160" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="123139" stop="123052"/>
              <exon start="121369" stop="121229"/>
              <exon start="121149" stop="121027"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E217486" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="121278" stop="121229"/>
              <exon start="121149" stop="120913"/>
              <exon start="120559" stop="120300"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E246766" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="120541" stop="120036"/>
              <exon start="119816" stop="119730"/>
              <exon start="119086" stop="118942"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E370665" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="120541" stop="120036"/>
              <exon start="119816" stop="119767"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E271439" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="120503" stop="120036"/>
              <exon start="119816" stop="119790"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E249362" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="120491" stop="120036"/>
              <exon start="119816" stop="119781"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E314892" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="120491" stop="120090"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E314995" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="120390" stop="120100"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E257422" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="120193" stop="120036"/>
              <exon start="119816" stop="119730"/>
              <exon start="119086" stop="118913"/>
              <exon start="118833" stop="118725"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E249288" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="120149" stop="120036"/>
              <exon start="119816" stop="119730"/>
              <exon start="119086" stop="118913"/>
              <exon start="118833" stop="118738"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E275091" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="120040" stop="120036"/>
              <exon start="119816" stop="119730"/>
              <exon start="119086" stop="118913"/>
              <exon start="118833" stop="118696"/>
              <exon start="118415" stop="118278"/>
              <exon start="118168" stop="118107"/>
              <exon start="118027" stop="117873"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E261730" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="119790" stop="119730"/>
              <exon start="119086" stop="118913"/>
              <exon start="118833" stop="118696"/>
              <exon start="118415" stop="118278"/>
              <exon start="118168" stop="118155"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E255543" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="119055" stop="118913"/>
              <exon start="118833" stop="118696"/>
              <exon start="118415" stop="118353"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E229381" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="119027" stop="118913"/>
              <exon start="118833" stop="118696"/>
              <exon start="118415" stop="118360"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E229740" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="118792" stop="118696"/>
              <exon start="118415" stop="118278"/>
              <exon start="118168" stop="118107"/>
              <exon start="118027" stop="117589"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E573825" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="118784" stop="118696"/>
              <exon start="118415" stop="118278"/>
              <exon start="118168" stop="118107"/>
              <exon start="118027" stop="117481"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E542978" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="118701" stop="118696"/>
              <exon start="118415" stop="118278"/>
              <exon start="118168" stop="118132"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E264242" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="118376" stop="118278"/>
              <exon start="118168" stop="118107"/>
              <exon start="118027" stop="117694"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E264163" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="118348" stop="118278"/>
              <exon start="118168" stop="118107"/>
              <exon start="118027" stop="117463"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E355126" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="118348" stop="118278"/>
              <exon start="118168" stop="118107"/>
              <exon start="118027" stop="117463"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E349395" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="118167" stop="118107"/>
              <exon start="118027" stop="117517"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E202862" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="118167" stop="118107"/>
              <exon start="118027" stop="117726"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E281400" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="118135" stop="118107"/>
              <exon start="118027" stop="117585"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E733861" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="118026" stop="117610"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E256282" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="21" AGS_serial="4" gDNA_strand="-"/>
          <translation>
            <gDNA_template>TTTTGAATGCTCTCTCTTTATGTAAACATTATGCTTTGTATGAAATAAAGGTCCTCTAAGATTTCTGTAAGCAACTTTGAAAATTTCT : TTAGGTACTCCAACTACTGGAGAAAGGGTATCAGAAGGTTTTGTAGCAGTGCCGTGGTGCATGAAGAGCCAATCACTCCACCTGTTGAGGTTAAATATAATCAGCTTCTCATTAATGGACAGTTTGTTGATGCAGCCTCAG : GGAAGACATTTCCTACATTTGACCCTCGAACAGGCGAAGCTATTACTACGGTTGCGGAGGCCGACACTGAAGATGTCAACCGTGCAGTCTTTGCTGCCCGTAAAGCATTTGATGAAGGACCATGGCCTAAAATGACTTGTGCAGTAACCGAACTTTCTTATCTTTCCATATCCTCTTCCTTGTCCCAACAGTGAGAGGCGGATTTAGAATTTGAACTTAACATGTTCAACCTTTAAG : GAAAGGTCATGTATAATGTTGCAGTTTGCTGATTTGCTTGAGAGGCACAGTGATGAACTTGCAGCACTTGAGACTTGGGATAAGGGAAAGCCTTACGAACAAGCTGCAAATGAAGAAATACCAATGCTCATTCGTCTTTTCAGATACTATGCTGGTTAAGAAAATAAGAAAAATGGCGTTATGTTTCCTTTTGACAGTTTAATAACCACTTATTGTATATCAATTGACGTTCTAATGTTTGCTGAATCACCCTAAATGCTTTTCTAAGTATTTCTGCTTACATTTCTTATTCAGGTTGGGCTGATAAAATTCATGGTCTTACAGCTCCTGCTGACAGTTTGCACCATGTTCAGACCCTGCATGAGCCAATTGGTGTTGCAGGACAGATAATACCCTGGAATTTTCCGTTATTAATGTTCGCCTGGAAAGTTGGCCCTGCACTTGCTTGTGGTAACACTGTCGTACTAAAACCAGCAGAACAAACACCACTCTCTGCCCTGTATGTGTCAAAGTTATTCCATGAG : GTTGGACTTCCCCCTGGAGTCTTAAATGTCATTCCTGGATCCGGTAGTGCAGGTGCAGATCTTGCCAGTCATATGGATGTCGATAAG : ATTGCTTTTACAGGGTCCACAGAAACTGGTAAAGCTGTCGTAGGTGCAGCTGCAAAGAGCAACCTAAAACCTGTGACATTGGAGCTCGGAGGAAAATCTCCTTTCATCATTTGTGAAGATGCAGACGTTGATAAAGCTGTTGAGTTGGCTCATTCTGCTGTTTTCTTTAACCAG : GGACAATGCTGCTGTGCTGGATCTCGGACATTCGTACATGAAAGAGTATATGATGAATTTGTGGAGAAAGCCAAAGCTCGTGCTTTAAAACGCATTGTTGGAGACCCTTTCAAGAAGGGAGTTGAACAAGGTCCGCAG : ATTGATACAGAGCAATTTGAGAAGATCCTGAAGTACATAAAATCTGGTACTGAAAGCGGGGCTACTCTCGAGTCTGGAGGGGAAAAATTGGGTTCCAAGGGCTTCTATGTCCAACCTACTGTCTTCTCAAATGTCCAG : GATAACATGCTGATTGCCAGAGATGAGATATTTGGACCAGTGCAGTCCCTCTTGAAATTCAA : GGATGTTGAAGAGGTCATCCGAAGGGCAAACTCGTCACATTATGGGTTGGCAGCGGGTGTTTTTACCCAGAATATAGATGCAGCCAACACAATATCTCGAGCCCTTAGAGTAGGGACAGTGTGGGTTAACTGCTTTAACATCTTTGATGCTGCCATTCCGTTTGGTGGTTATAAGATGAGTGGACATGGAAGAGAGAAGGGAGTCTACAGCCTAAGTAACTACTTGCAAGTCAAAGCTATTGTTACCCCTCTGAAGAATCCAGCATGGCTGTAGTTTTCCCCCCTGCTTTCTGGTACTCCTGAGATGTCGTGCAACACGGCAATCTTGTCTTTTAGAGGTCACTTGTATACAGTGTAGATAAGACCAAAACGCTGTATTGTGTGTGTGTTATTGTTTGTTACTAACTTCTTATGATTTGATAACAATATGCAAACTTGTTTGTGTGAGACCTTTCTTGATTTCTGTAGCTCTGATGCAAAATAGGATCTTGTGTTTGAGTTTTGTGGGAATGTAATGAATTATATATAGATGTAATGTTATAATTCTATATTACTACGGTATATA</gDNA_template>
            <first_frame> F  *  M  L  S  L  Y  V  N  I  M  L  C  M  K  *  R  S  S  K  I  S  V  S  N  F  E  N  F   : F  R  Y  S  N  Y  W  R  K  G  I  R  R  F  C  S  S  A  V  V  H  E  E  P  I  T  P  P  V  E  V  K  Y  N  Q  L  L  I  N  G  Q  F  V  D  A  A  S   : G  K  T  F  P  T  F  D  P  R  T  G  E  A  I  T  T  V  A  E  A  D  T  E  D  V  N  R  A  V  F  A  A  R  K  A  F  D  E  G  P  W  P  K  M  T  C  A  V  T  E  L  S  Y  L  S  I  S  S  S  L  S  Q  Q  *  E  A  D  L  E  F  E  L  N  M  F  N  L  *   : G  K  V  M  Y  N  V  A  V  C  *  F  A  *  E  A  Q  *  *  T  C  S  T  *  D  L  G  *  G  K  A  L  R  T  S  C  K  *  R  N  T  N  A  H  S  S  F  Q  I  L  C  W  L  R  K  *  E  K  W  R  Y  V  S  F  *  Q  F  N  N  H  L  L  Y  I  N  *  R  S  N  V  C  *  I  T  L  N  A  F  L  S  I  S  A  Y  I  S  Y  S  G  W  A  D  K  I  H  G  L  T  A  P  A  D  S  L  H  H  V  Q  T  L  H  E  P  I  G  V  A  G  Q  I  I  P  W  N  F  P  L  L  M  F  A  W  K  V  G  P  A  L  A  C  G  N  T  V  V  L  K  P  A  E  Q  T  P  L  S  A  L  Y  V  S  K  L  F  H  E  :  V  G  L  P  P  G  V  L  N  V  I  P  G  S  G  S  A  G  A  D  L  A  S  H  M  D  V  D  K  :  I  A  F  T  G  S  T  E  T  G  K  A  V  V  G  A  A  A  K  S  N  L  K  P  V  T  L  E  L  G  G  K  S  P  F  I  I  C  E  D  A  D  V  D  K  A  V  E  L  A  H  S  A  V  F  F  N  Q  :  G  Q  C  C  C  A  G  S  R  T  F  V  H  E  R  V  Y  D  E  F  V  E  K  A  K  A  R  A  L  K  R  I  V  G  D  P  F  K  K  G  V  E  Q  G  P  Q  :  I  D  T  E  Q  F  E  K  I  L  K  Y  I  K  S  G  T  E  S  G  A  T  L  E  S  G  G  E  K  L  G  S  K  G  F  Y  V  Q  P  T  V  F  S  N  V  Q  :  D  N  M  L  I  A  R  D  E  I  F  G  P  V  Q  S  L  L  K  F  K :   D  V  E  E  V  I  R  R  A  N  S  S  H  Y  G  L  A  A  G  V  F  T  Q  N  I  D  A  A  N  T  I  S  R  A  L  R  V  G  T  V  W  V  N  C  F  N  I  F  D  A  A  I  P  F  G  G  Y  K  M  S  G  H  G  R  E  K  G  V  Y  S  L  S  N  Y  L  Q  V  K  A  I  V  T  P  L  K  N  P  A  W  L  *  F  S  P  L  L  S  G  T  P  E  M  S  C  N  T  A  I  L  S  F  R  G  H  L  Y  T  V  *  I  R  P  K  R  C  I  V  C  V  L  L  F  V  T  N  F  L  *  F  D  N  N  M  Q  T  C  L  C  E  T  F  L  D  F  C  S  S  D  A  K  *  D  L  V  F  E  F  C  G  N  V  M  N  Y  I  *  M  *  C  Y  N  S  I  L  L  R  Y  I </first_frame>
            <second_frame>  F  E  C  S  L  F  M  *  T  L  C  F  V  *  N  K  G  P  L  R  F  L  *  A  T  L  K  I  S  :  L  G  T  P  T  T  G  E  R  V  S  E  G  F  V  A  V  P  W  C  M  K  S  Q  S  L  H  L  L  R  L  N  I  I  S  F  S  L  M  D  S  L  L  M  Q  P  Q  :  G  R  H  F  L  H  L  T  L  E  Q  A  K  L  L  L  R  L  R  R  P  T  L  K  M  S  T  V  Q  S  L  L  P  V  K  H  L  M  K  D  H  G  L  K  *  L  V  Q  *  P  N  F  L  I  F  P  Y  P  L  P  C  P  N  S  E  R  R  I  *  N  L  N  L  T  C  S  T  F  K  :  E  R  S  C  I  M  L  Q  F  A  D  L  L  E  R  H  S  D  E  L  A  A  L  E  T  W  D  K  G  K  P  Y  E  Q  A  A  N  E  E  I  P  M  L  I  R  L  F  R  Y  Y  A  G  *  E  N  K  K  N  G  V  M  F  P  F  D  S  L  I  T  T  Y  C  I  S  I  D  V  L  M  F  A  E  S  P  *  M  L  F  *  V  F  L  L  T  F  L  I  Q  V  G  L  I  K  F  M  V  L  Q  L  L  L  T  V  C  T  M  F  R  P  C  M  S  Q  L  V  L  Q  D  R  *  Y  P  G  I  F  R  Y  *  C  S  P  G  K  L  A  L  H  L  L  V  V  T  L  S  Y  *  N  Q  Q  N  K  H  H  S  L  P  C  M  C  Q  S  Y  S  M  R :   L  D  F  P  L  E  S  *  M  S  F  L  D  P  V  V  Q  V  Q  I  L  P  V  I  W  M  S  I  R :   L  L  L  Q  G  P  Q  K  L  V  K  L  S  *  V  Q  L  Q  R  A  T  *  N  L  *  H  W  S  S  E  E  N  L  L  S  S  F  V  K  M  Q  T  L  I  K  L  L  S  W  L  I  L  L  F  S  L  T  R :   D  N  A  A  V  L  D  L  G  H  S  Y  M  K  E  Y  M  M  N  L  W  R  K  P  K  L  V  L  *  N  A  L  L  E  T  L  S  R  R  E  L  N  K  V  R  R :   L  I  Q  S  N  L  R  R  S  *  S  T  *  N  L  V  L  K  A  G  L  L  S  S  L  E  G  K  N  W  V  P  R  A  S  M  S  N  L  L  S  S  Q  M  S  R :   I  T  C  *  L  P  E  M  R  Y  L  D  Q  C  S  P  S  *  N  S   : R  M  L  K  R  S  S  E  G  Q  T  R  H  I  M  G  W  Q  R  V  F  L  P  R  I  *  M  Q  P  T  Q  Y  L  E  P  L  E  *  G  Q  C  G  L  T  A  L  T  S  L  M  L  P  F  R  L  V  V  I  R  *  V  D  M  E  E  R  R  E  S  T  A  *  V  T  T  C  K  S  K  L  L  L  P  L  *  R  I  Q  H  G  C  S  F  P  P  C  F  L  V  L  L  R  C  R  A  T  R  Q  S  C  L  L  E  V  T  C  I  Q  C  R  *  D  Q  N  A  V  L  C  V  C  Y  C  L  L  L  T  S  Y  D  L  I  T  I  C  K  L  V  C  V  R  P  F  L  I  S  V  A  L  M  Q  N  R  I  L  C  L  S  F  V  G  M  *  *  I  I  Y  R  C  N  V  I  I  L  Y  Y  Y  G  I   </second_frame>
            <third_frame>   L  N  A  L  S  L  C  K  H  Y  A  L  Y  E  I  K  V  L  *  D  F  C  K  Q  L  *  K  F  L :   *  V  L  Q  L  L  E  K  G  Y  Q  K  V  L  *  Q  C  R  G  A  *  R  A  N  H  S  T  C  *  G  *  I  *  S  A  S  H  *  W  T  V  C  *  C  S  L  R :   E  D  I  S  Y  I  *  P  S  N  R  R  S  Y  Y  Y  G  C  G  G  R  H  *  R  C  Q  P  C  S  L  C  C  P  *  S  I  *  *  R  T  M  A  *  N  D  L  C  S  N  R  T  F  L  S  F  H  I  L  F  L  V  P  T  V  R  G  G  F  R  I  *  T  *  H  V  Q  P  L  R :   K  G  H  V  *  C  C  S  L  L  I  C  L  R  G  T  V  M  N  L  Q  H  L  R  L  G  I  R  E  S  L  T  N  K  L  Q  M  K  K  Y  Q  C  S  F  V  F  S  D  T  M  L  V  K  K  I  R  K  M  A  L  C  F  L  L  T  V  *  *  P  L  I  V  Y  Q  L  T  F  *  C  L  L  N  H  P  K  C  F  S  K  Y  F  C  L  H  F  L  F  R  L  G  *  *  N  S  W  S  Y  S  S  C  *  Q  F  A  P  C  S  D  P  A  *  A  N  W  C  C  R  T  D  N  T  L  E  F  S  V  I  N  V  R  L  E  S  W  P  C  T  C  L  W  *  H  C  R  T  K  T  S  R  T  N  T  T  L  C  P  V  C  V  K  V  I  P  *   : G  W  T  S  P  W  S  L  K  C  H  S  W  I  R  *  C  R  C  R  S  C  Q  S  Y  G  C  R  *   : D  C  F  Y  R  V  H  R  N  W  *  S  C  R  R  C  S  C  K  E  Q  P  K  T  C  D  I  G  A  R  R  K  I  S  F  H  H  L  *  R  C  R  R  *  *  S  C  *  V  G  S  F  C  C  F  L  *  P   : G  T  M  L  L  C  W  I  S  D  I  R  T  *  K  S  I  *  *  I  C  G  E  S  Q  S  S  C  F  K  T  H  C  W  R  P  F  Q  E  G  S  *  T  R  S  A   : D  *  Y  R  A  I  *  E  D  P  E  V  H  K  I  W  Y  *  K  R  G  Y  S  R  V  W  R  G  K  I  G  F  Q  G  L  L  C  P  T  Y  C  L  L  K  C  P   : G  *  H  A  D  C  Q  R  *  D  I  W  T  S  A  V  P  L  E  I  Q  :  G  C  *  R  G  H  P  K  G  K  L  V  T  L  W  V  G  S  G  C  F  Y  P  E  Y  R  C  S  Q  H  N  I  S  S  P  *  S  R  D  S  V  G  *  L  L  *  H  L  *  C  C  H  S  V  W  W  L  *  D  E  W  T  W  K  R  E  G  S  L  Q  P  K  *  L  L  A  S  Q  S  Y  C  Y  P  S  E  E  S  S  M  A  V  V  F  P  P  A  F  W  Y  S  *  D  V  V  Q  H  G  N  L  V  F  *  R  S  L  V  Y  S  V  D  K  T  K  T  L  Y  C  V  C  V  I  V  C  Y  *  L  L  M  I  *  *  Q  Y  A  N  L  F  V  *  D  L  S  *  F  L  *  L  *  C  K  I  G  S  C  V  *  V  L  W  E  C  N  E  L  Y  I  D  V  M  L  *  F  Y  I  T  T  V  Y  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02HBa0236E02.1" strand="-"/>
                <serials PGL_serial="21" AGS_serial="4" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="120314" stop="120036"/>
                    <exon start="119816" stop="119730"/>
                    <exon start="119086" stop="118913"/>
                    <exon start="118833" stop="118696"/>
                    <exon start="118415" stop="118278"/>
                    <exon start="118168" stop="118107"/>
                    <exon start="118027" stop="117754"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>1149</number_coding_nucleotides>
                  <number_encoded_amino_acids>383</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>ITLNAFLSISAYISYSGWADKIHGLTAPADSLHHVQTLHEPIGVAGQIIPWNFPLLMFAWKVGPALACGNTVVLKPAEQTPLSALYVSKLFHEVGLPPGVLNVIPGSGSAGADLASHMDVDKIAFTGSTETGKAVVGAAAKSNLKPVTLELGGKSPFIICEDADVDKAVELAHSAVFFNQGQCCCAGSRTFVHERVYDEFVEKAKARALKRIVGDPFKKGVEQGPQIDTEQFEKILKYIKSGTESGATLESGGEKLGSKGFYVQPTVFSNVQDNMLIARDEIFGPVQSLLKFKDVEEVIRRANSSHYGLAAGVFTQNIDAANTISRALRVGTVWVNCFNIFDAAIPFGGYKMSGHGREKGVYSLSNYLQVKAIVTPLKNPAWL*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C02HBa0236E02.1" strand="-"/>
                <serials PGL_serial="21" AGS_serial="4" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="123091" stop="123052"/>
                    <exon start="121369" stop="121229"/>
                    <exon start="121149" stop="120956"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>372</number_coding_nucleotides>
                  <number_encoded_amino_acids>124</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>RSSKISVSNFENFFRYSNYWRKGIRRFCSSAVVHEEPITPPVEVKYNQLLINGQFVDAASGKTFPTFDPRTGEAITTVAEADTEDVNRAVFAARKAFDEGPWPKMTCAVTELSYLSISSSLSQQ*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="5">
          <exon_coordinates>
            <exon e_start="123139" e_stop="123052"/>
            <exon e_start="121369" e_stop="121229"/>
            <exon e_start="121149" e_stop="121007"/>
            <exon e_start="120559" e_stop="120036"/>
            <exon e_start="119816" e_stop="119730"/>
            <exon e_start="119086" e_stop="118913"/>
            <exon e_start="118833" e_stop="118696"/>
            <exon e_start="118415" e_stop="118278"/>
            <exon e_start="118168" e_stop="118107"/>
            <exon e_start="118027" e_stop="117463"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.000" acc_prob="0.901" e_score="0.977"/>
          <exon-intron don_prob="0.986" acc_prob="0.750" e_score="1.000"/>
          <exon-intron don_prob="0.793" acc_prob="0.922" e_score="1.000"/>
          <exon-intron don_prob="0.959" acc_prob="0.980" e_score="1.000"/>
          <exon-intron don_prob="0.996" acc_prob="1.000" e_score="1.000"/>
          <exon-intron don_prob="0.933" acc_prob="0.857" e_score="1.000"/>
          <exon-intron don_prob="0.997" acc_prob="0.996" e_score="1.000"/>
          <exon-intron don_prob="0.961" acc_prob="0.997" e_score="1.000"/>
          <exon-intron don_prob="0.995" acc_prob="0.920" e_score="1.000"/>
          <exon-only e_score="0.998"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.977">
            <gDNA_exon_boundary e_start="123139" e_stop="123052" e_length="88"/>
          </exon>
          <intron i_serial="1" don_prob="0.000" acc_prob="0.901">
            <gDNA_intron_boundary i_start="123051" i_stop="121370" i_length="1682"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="121369" e_stop="121229" e_length="141"/>
          </exon>
          <intron i_serial="2" don_prob="0.986" acc_prob="0.750">
            <gDNA_intron_boundary i_start="121228" i_stop="121150" i_length="79"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="121149" e_stop="121007" e_length="143"/>
          </exon>
          <intron i_serial="3" don_prob="0.793" acc_prob="0.922">
            <gDNA_intron_boundary i_start="121006" i_stop="120560" i_length="447"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="120559" e_stop="120036" e_length="524"/>
          </exon>
          <intron i_serial="4" don_prob="0.959" acc_prob="0.980">
            <gDNA_intron_boundary i_start="120035" i_stop="119817" i_length="219"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="119816" e_stop="119730" e_length="87"/>
          </exon>
          <intron i_serial="5" don_prob="0.996" acc_prob="1.000">
            <gDNA_intron_boundary i_start="119729" i_stop="119087" i_length="643"/>
          </intron>
          <exon e_serial="6" e_score="1.000">
            <gDNA_exon_boundary e_start="119086" e_stop="118913" e_length="174"/>
          </exon>
          <intron i_serial="6" don_prob="0.933" acc_prob="0.857">
            <gDNA_intron_boundary i_start="118912" i_stop="118834" i_length="79"/>
          </intron>
          <exon e_serial="7" e_score="1.000">
            <gDNA_exon_boundary e_start="118833" e_stop="118696" e_length="138"/>
          </exon>
          <intron i_serial="7" don_prob="0.997" acc_prob="0.996">
            <gDNA_intron_boundary i_start="118695" i_stop="118416" i_length="280"/>
          </intron>
          <exon e_serial="8" e_score="1.000">
            <gDNA_exon_boundary e_start="118415" e_stop="118278" e_length="138"/>
          </exon>
          <intron i_serial="8" don_prob="0.961" acc_prob="0.997">
            <gDNA_intron_boundary i_start="118277" i_stop="118169" i_length="109"/>
          </intron>
          <exon e_serial="9" e_score="1.000">
            <gDNA_exon_boundary e_start="118168" e_stop="118107" e_length="62"/>
          </exon>
          <intron i_serial="9" don_prob="0.995" acc_prob="0.920">
            <gDNA_intron_boundary i_start="118106" i_stop="118028" i_length="79"/>
          </intron>
          <exon e_serial="10" e_score="0.998">
            <gDNA_exon_boundary e_start="118027" e_stop="117463" e_length="565"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="123139" stop="123052"/>
              <exon start="121369" stop="121229"/>
              <exon start="121149" stop="121027"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E217486" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="123093" stop="123052"/>
              <exon start="121369" stop="121229"/>
              <exon start="121149" stop="121007"/>
              <exon start="120559" stop="120196"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E371149" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="123091" stop="123052"/>
              <exon start="121369" stop="121229"/>
              <exon start="121149" stop="121007"/>
              <exon start="120559" stop="120407"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E271849" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="120541" stop="120036"/>
              <exon start="119816" stop="119730"/>
              <exon start="119086" stop="118942"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E370665" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="120541" stop="120036"/>
              <exon start="119816" stop="119767"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E271439" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="120503" stop="120036"/>
              <exon start="119816" stop="119790"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E249362" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="120491" stop="120036"/>
              <exon start="119816" stop="119781"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E314892" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="120491" stop="120090"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E314995" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="120390" stop="120100"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E257422" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="120193" stop="120036"/>
              <exon start="119816" stop="119730"/>
              <exon start="119086" stop="118913"/>
              <exon start="118833" stop="118725"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E249288" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="120149" stop="120036"/>
              <exon start="119816" stop="119730"/>
              <exon start="119086" stop="118913"/>
              <exon start="118833" stop="118738"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E275091" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="120040" stop="120036"/>
              <exon start="119816" stop="119730"/>
              <exon start="119086" stop="118913"/>
              <exon start="118833" stop="118696"/>
              <exon start="118415" stop="118278"/>
              <exon start="118168" stop="118107"/>
              <exon start="118027" stop="117873"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E261730" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="119790" stop="119730"/>
              <exon start="119086" stop="118913"/>
              <exon start="118833" stop="118696"/>
              <exon start="118415" stop="118278"/>
              <exon start="118168" stop="118155"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E255543" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="119055" stop="118913"/>
              <exon start="118833" stop="118696"/>
              <exon start="118415" stop="118353"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E229381" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="119027" stop="118913"/>
              <exon start="118833" stop="118696"/>
              <exon start="118415" stop="118360"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E229740" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="118792" stop="118696"/>
              <exon start="118415" stop="118278"/>
              <exon start="118168" stop="118107"/>
              <exon start="118027" stop="117589"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E573825" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="118784" stop="118696"/>
              <exon start="118415" stop="118278"/>
              <exon start="118168" stop="118107"/>
              <exon start="118027" stop="117481"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E542978" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="118701" stop="118696"/>
              <exon start="118415" stop="118278"/>
              <exon start="118168" stop="118132"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E264242" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="118376" stop="118278"/>
              <exon start="118168" stop="118107"/>
              <exon start="118027" stop="117694"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E264163" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="118348" stop="118278"/>
              <exon start="118168" stop="118107"/>
              <exon start="118027" stop="117463"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E355126" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="118348" stop="118278"/>
              <exon start="118168" stop="118107"/>
              <exon start="118027" stop="117463"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E349395" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="118167" stop="118107"/>
              <exon start="118027" stop="117517"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E202862" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="118167" stop="118107"/>
              <exon start="118027" stop="117726"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E281400" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="118135" stop="118107"/>
              <exon start="118027" stop="117585"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E733861" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="118026" stop="117610"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E256282" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="21" AGS_serial="5" gDNA_strand="-"/>
          <translation>
            <gDNA_template>TTTTGAATGCTCTCTCTTTATGTAAACATTATGCTTTGTATGAAATAAAGGTCCTCTAAGATTTCTGTAAGCAACTTTGAAAATTTCT : TTAGGTACTCCAACTACTGGAGAAAGGGTATCAGAAGGTTTTGTAGCAGTGCCGTGGTGCATGAAGAGCCAATCACTCCACCTGTTGAGGTTAAATATAATCAGCTTCTCATTAATGGACAGTTTGTTGATGCAGCCTCAG : GGAAGACATTTCCTACATTTGACCCTCGAACAGGCGAAGCTATTACTACGGTTGCGGAGGCCGACACTGAAGATGTCAACCGTGCAGTCTTTGCTGCCCGTAAAGCATTTGATGAAGGACCATGGCCTAAAATGACTTGTGCA : GAAAGGTCATGTATAATGTTGCAGTTTGCTGATTTGCTTGAGAGGCACAGTGATGAACTTGCAGCACTTGAGACTTGGGATAAGGGAAAGCCTTACGAACAAGCTGCAAATGAAGAAATACCAATGCTCATTCGTCTTTTCAGATACTATGCTGGTTAAGAAAATAAGAAAAATGGCGTTATGTTTCCTTTTGACAGTTTAATAACCACTTATTGTATATCAATTGACGTTCTAATGTTTGCTGAATCACCCTAAATGCTTTTCTAAGTATTTCTGCTTACATTTCTTATTCAGGTTGGGCTGATAAAATTCATGGTCTTACAGCTCCTGCTGACAGTTTGCACCATGTTCAGACCCTGCATGAGCCAATTGGTGTTGCAGGACAGATAATACCCTGGAATTTTCCGTTATTAATGTTCGCCTGGAAAGTTGGCCCTGCACTTGCTTGTGGTAACACTGTCGTACTAAAACCAGCAGAACAAACACCACTCTCTGCCCTGTATGTGTCAAAGTTATTCCATGAG : GTTGGACTTCCCCCTGGAGTCTTAAATGTCATTCCTGGATCCGGTAGTGCAGGTGCAGATCTTGCCAGTCATATGGATGTCGATAAG : ATTGCTTTTACAGGGTCCACAGAAACTGGTAAAGCTGTCGTAGGTGCAGCTGCAAAGAGCAACCTAAAACCTGTGACATTGGAGCTCGGAGGAAAATCTCCTTTCATCATTTGTGAAGATGCAGACGTTGATAAAGCTGTTGAGTTGGCTCATTCTGCTGTTTTCTTTAACCAG : GGACAATGCTGCTGTGCTGGATCTCGGACATTCGTACATGAAAGAGTATATGATGAATTTGTGGAGAAAGCCAAAGCTCGTGCTTTAAAACGCATTGTTGGAGACCCTTTCAAGAAGGGAGTTGAACAAGGTCCGCAG : ATTGATACAGAGCAATTTGAGAAGATCCTGAAGTACATAAAATCTGGTACTGAAAGCGGGGCTACTCTCGAGTCTGGAGGGGAAAAATTGGGTTCCAAGGGCTTCTATGTCCAACCTACTGTCTTCTCAAATGTCCAG : GATAACATGCTGATTGCCAGAGATGAGATATTTGGACCAGTGCAGTCCCTCTTGAAATTCAA : GGATGTTGAAGAGGTCATCCGAAGGGCAAACTCGTCACATTATGGGTTGGCAGCGGGTGTTTTTACCCAGAATATAGATGCAGCCAACACAATATCTCGAGCCCTTAGAGTAGGGACAGTGTGGGTTAACTGCTTTAACATCTTTGATGCTGCCATTCCGTTTGGTGGTTATAAGATGAGTGGACATGGAAGAGAGAAGGGAGTCTACAGCCTAAGTAACTACTTGCAAGTCAAAGCTATTGTTACCCCTCTGAAGAATCCAGCATGGCTGTAGTTTTCCCCCCTGCTTTCTGGTACTCCTGAGATGTCGTGCAACACGGCAATCTTGTCTTTTAGAGGTCACTTGTATACAGTGTAGATAAGACCAAAACGCTGTATTGTGTGTGTGTTATTGTTTGTTACTAACTTCTTATGATTTGATAACAATATGCAAACTTGTTTGTGTGAGACCTTTCTTGATTTCTGTAGCTCTGATGCAAAATAGGATCTTGTGTTTGAGTTTTGTGGGAATGTAATGAATTATATATAGATGTAATGTTATAATTCTATATTACTACGGTATATA</gDNA_template>
            <first_frame> F  *  M  L  S  L  Y  V  N  I  M  L  C  M  K  *  R  S  S  K  I  S  V  S  N  F  E  N  F   : F  R  Y  S  N  Y  W  R  K  G  I  R  R  F  C  S  S  A  V  V  H  E  E  P  I  T  P  P  V  E  V  K  Y  N  Q  L  L  I  N  G  Q  F  V  D  A  A  S   : G  K  T  F  P  T  F  D  P  R  T  G  E  A  I  T  T  V  A  E  A  D  T  E  D  V  N  R  A  V  F  A  A  R  K  A  F  D  E  G  P  W  P  K  M  T  C  A  :  E  R  S  C  I  M  L  Q  F  A  D  L  L  E  R  H  S  D  E  L  A  A  L  E  T  W  D  K  G  K  P  Y  E  Q  A  A  N  E  E  I  P  M  L  I  R  L  F  R  Y  Y  A  G  *  E  N  K  K  N  G  V  M  F  P  F  D  S  L  I  T  T  Y  C  I  S  I  D  V  L  M  F  A  E  S  P  *  M  L  F  *  V  F  L  L  T  F  L  I  Q  V  G  L  I  K  F  M  V  L  Q  L  L  L  T  V  C  T  M  F  R  P  C  M  S  Q  L  V  L  Q  D  R  *  Y  P  G  I  F  R  Y  *  C  S  P  G  K  L  A  L  H  L  L  V  V  T  L  S  Y  *  N  Q  Q  N  K  H  H  S  L  P  C  M  C  Q  S  Y  S  M  R :   L  D  F  P  L  E  S  *  M  S  F  L  D  P  V  V  Q  V  Q  I  L  P  V  I  W  M  S  I  R :   L  L  L  Q  G  P  Q  K  L  V  K  L  S  *  V  Q  L  Q  R  A  T  *  N  L  *  H  W  S  S  E  E  N  L  L  S  S  F  V  K  M  Q  T  L  I  K  L  L  S  W  L  I  L  L  F  S  L  T  R :   D  N  A  A  V  L  D  L  G  H  S  Y  M  K  E  Y  M  M  N  L  W  R  K  P  K  L  V  L  *  N  A  L  L  E  T  L  S  R  R  E  L  N  K  V  R  R :   L  I  Q  S  N  L  R  R  S  *  S  T  *  N  L  V  L  K  A  G  L  L  S  S  L  E  G  K  N  W  V  P  R  A  S  M  S  N  L  L  S  S  Q  M  S  R :   I  T  C  *  L  P  E  M  R  Y  L  D  Q  C  S  P  S  *  N  S   : R  M  L  K  R  S  S  E  G  Q  T  R  H  I  M  G  W  Q  R  V  F  L  P  R  I  *  M  Q  P  T  Q  Y  L  E  P  L  E  *  G  Q  C  G  L  T  A  L  T  S  L  M  L  P  F  R  L  V  V  I  R  *  V  D  M  E  E  R  R  E  S  T  A  *  V  T  T  C  K  S  K  L  L  L  P  L  *  R  I  Q  H  G  C  S  F  P  P  C  F  L  V  L  L  R  C  R  A  T  R  Q  S  C  L  L  E  V  T  C  I  Q  C  R  *  D  Q  N  A  V  L  C  V  C  Y  C  L  L  L  T  S  Y  D  L  I  T  I  C  K  L  V  C  V  R  P  F  L  I  S  V  A  L  M  Q  N  R  I  L  C  L  S  F  V  G  M  *  *  I  I  Y  R  C  N  V  I  I  L  Y  Y  Y  G  I   </first_frame>
            <second_frame>  F  E  C  S  L  F  M  *  T  L  C  F  V  *  N  K  G  P  L  R  F  L  *  A  T  L  K  I  S  :  L  G  T  P  T  T  G  E  R  V  S  E  G  F  V  A  V  P  W  C  M  K  S  Q  S  L  H  L  L  R  L  N  I  I  S  F  S  L  M  D  S  L  L  M  Q  P  Q  :  G  R  H  F  L  H  L  T  L  E  Q  A  K  L  L  L  R  L  R  R  P  T  L  K  M  S  T  V  Q  S  L  L  P  V  K  H  L  M  K  D  H  G  L  K  *  L  V  Q :   K  G  H  V  *  C  C  S  L  L  I  C  L  R  G  T  V  M  N  L  Q  H  L  R  L  G  I  R  E  S  L  T  N  K  L  Q  M  K  K  Y  Q  C  S  F  V  F  S  D  T  M  L  V  K  K  I  R  K  M  A  L  C  F  L  L  T  V  *  *  P  L  I  V  Y  Q  L  T  F  *  C  L  L  N  H  P  K  C  F  S  K  Y  F  C  L  H  F  L  F  R  L  G  *  *  N  S  W  S  Y  S  S  C  *  Q  F  A  P  C  S  D  P  A  *  A  N  W  C  C  R  T  D  N  T  L  E  F  S  V  I  N  V  R  L  E  S  W  P  C  T  C  L  W  *  H  C  R  T  K  T  S  R  T  N  T  T  L  C  P  V  C  V  K  V  I  P  *   : G  W  T  S  P  W  S  L  K  C  H  S  W  I  R  *  C  R  C  R  S  C  Q  S  Y  G  C  R  *   : D  C  F  Y  R  V  H  R  N  W  *  S  C  R  R  C  S  C  K  E  Q  P  K  T  C  D  I  G  A  R  R  K  I  S  F  H  H  L  *  R  C  R  R  *  *  S  C  *  V  G  S  F  C  C  F  L  *  P   : G  T  M  L  L  C  W  I  S  D  I  R  T  *  K  S  I  *  *  I  C  G  E  S  Q  S  S  C  F  K  T  H  C  W  R  P  F  Q  E  G  S  *  T  R  S  A   : D  *  Y  R  A  I  *  E  D  P  E  V  H  K  I  W  Y  *  K  R  G  Y  S  R  V  W  R  G  K  I  G  F  Q  G  L  L  C  P  T  Y  C  L  L  K  C  P   : G  *  H  A  D  C  Q  R  *  D  I  W  T  S  A  V  P  L  E  I  Q  :  G  C  *  R  G  H  P  K  G  K  L  V  T  L  W  V  G  S  G  C  F  Y  P  E  Y  R  C  S  Q  H  N  I  S  S  P  *  S  R  D  S  V  G  *  L  L  *  H  L  *  C  C  H  S  V  W  W  L  *  D  E  W  T  W  K  R  E  G  S  L  Q  P  K  *  L  L  A  S  Q  S  Y  C  Y  P  S  E  E  S  S  M  A  V  V  F  P  P  A  F  W  Y  S  *  D  V  V  Q  H  G  N  L  V  F  *  R  S  L  V  Y  S  V  D  K  T  K  T  L  Y  C  V  C  V  I  V  C  Y  *  L  L  M  I  *  *  Q  Y  A  N  L  F  V  *  D  L  S  *  F  L  *  L  *  C  K  I  G  S  C  V  *  V  L  W  E  C  N  E  L  Y  I  D  V  M  L  *  F  Y  I  T  T  V  Y  </second_frame>
            <third_frame>   L  N  A  L  S  L  C  K  H  Y  A  L  Y  E  I  K  V  L  *  D  F  C  K  Q  L  *  K  F  L :   *  V  L  Q  L  L  E  K  G  Y  Q  K  V  L  *  Q  C  R  G  A  *  R  A  N  H  S  T  C  *  G  *  I  *  S  A  S  H  *  W  T  V  C  *  C  S  L  R :   E  D  I  S  Y  I  *  P  S  N  R  R  S  Y  Y  Y  G  C  G  G  R  H  *  R  C  Q  P  C  S  L  C  C  P  *  S  I  *  *  R  T  M  A  *  N  D  L  C   : R  K  V  M  Y  N  V  A  V  C  *  F  A  *  E  A  Q  *  *  T  C  S  T  *  D  L  G  *  G  K  A  L  R  T  S  C  K  *  R  N  T  N  A  H  S  S  F  Q  I  L  C  W  L  R  K  *  E  K  W  R  Y  V  S  F  *  Q  F  N  N  H  L  L  Y  I  N  *  R  S  N  V  C  *  I  T  L  N  A  F  L  S  I  S  A  Y  I  S  Y  S  G  W  A  D  K  I  H  G  L  T  A  P  A  D  S  L  H  H  V  Q  T  L  H  E  P  I  G  V  A  G  Q  I  I  P  W  N  F  P  L  L  M  F  A  W  K  V  G  P  A  L  A  C  G  N  T  V  V  L  K  P  A  E  Q  T  P  L  S  A  L  Y  V  S  K  L  F  H  E  :  V  G  L  P  P  G  V  L  N  V  I  P  G  S  G  S  A  G  A  D  L  A  S  H  M  D  V  D  K  :  I  A  F  T  G  S  T  E  T  G  K  A  V  V  G  A  A  A  K  S  N  L  K  P  V  T  L  E  L  G  G  K  S  P  F  I  I  C  E  D  A  D  V  D  K  A  V  E  L  A  H  S  A  V  F  F  N  Q  :  G  Q  C  C  C  A  G  S  R  T  F  V  H  E  R  V  Y  D  E  F  V  E  K  A  K  A  R  A  L  K  R  I  V  G  D  P  F  K  K  G  V  E  Q  G  P  Q  :  I  D  T  E  Q  F  E  K  I  L  K  Y  I  K  S  G  T  E  S  G  A  T  L  E  S  G  G  E  K  L  G  S  K  G  F  Y  V  Q  P  T  V  F  S  N  V  Q  :  D  N  M  L  I  A  R  D  E  I  F  G  P  V  Q  S  L  L  K  F  K :   D  V  E  E  V  I  R  R  A  N  S  S  H  Y  G  L  A  A  G  V  F  T  Q  N  I  D  A  A  N  T  I  S  R  A  L  R  V  G  T  V  W  V  N  C  F  N  I  F  D  A  A  I  P  F  G  G  Y  K  M  S  G  H  G  R  E  K  G  V  Y  S  L  S  N  Y  L  Q  V  K  A  I  V  T  P  L  K  N  P  A  W  L  *  F  S  P  L  L  S  G  T  P  E  M  S  C  N  T  A  I  L  S  F  R  G  H  L  Y  T  V  *  I  R  P  K  R  C  I  V  C  V  L  L  F  V  T  N  F  L  *  F  D  N  N  M  Q  T  C  L  C  E  T  F  L  D  F  C  S  S  D  A  K  *  D  L  V  F  E  F  C  G  N  V  M  N  Y  I  *  M  *  C  Y  N  S  I  L  L  R  Y  I </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02HBa0236E02.1" strand="-"/>
                <serials PGL_serial="21" AGS_serial="5" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="120314" stop="120036"/>
                    <exon start="119816" stop="119730"/>
                    <exon start="119086" stop="118913"/>
                    <exon start="118833" stop="118696"/>
                    <exon start="118415" stop="118278"/>
                    <exon start="118168" stop="118107"/>
                    <exon start="118027" stop="117754"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>1149</number_coding_nucleotides>
                  <number_encoded_amino_acids>383</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>ITLNAFLSISAYISYSGWADKIHGLTAPADSLHHVQTLHEPIGVAGQIIPWNFPLLMFAWKVGPALACGNTVVLKPAEQTPLSALYVSKLFHEVGLPPGVLNVIPGSGSAGADLASHMDVDKIAFTGSTETGKAVVGAAAKSNLKPVTLELGGKSPFIICEDADVDKAVELAHSAVFFNQGQCCCAGSRTFVHERVYDEFVEKAKARALKRIVGDPFKKGVEQGPQIDTEQFEKILKYIKSGTESGATLESGGEKLGSKGFYVQPTVFSNVQDNMLIARDEIFGPVQSLLKFKDVEEVIRRANSSHYGLAAGVFTQNIDAANTISRALRVGTVWVNCFNIFDAAIPFGGYKMSGHGREKGVYSLSNYLQVKAIVTPLKNPAWL*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C02HBa0236E02.1" strand="-"/>
                <serials PGL_serial="21" AGS_serial="5" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="123091" stop="123052"/>
                    <exon start="121369" stop="121229"/>
                    <exon start="121149" stop="121007"/>
                    <exon start="120559" stop="120401"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>480</number_coding_nucleotides>
                  <number_encoded_amino_acids>160</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>RSSKISVSNFENFFRYSNYWRKGIRRFCSSAVVHEEPITPPVEVKYNQLLINGQFVDAASGKTFPTFDPRTGEAITTVAEADTEDVNRAVFAARKAFDEGPWPKMTCAERSCIMLQFADLLERHSDELAALETWDKGKPYEQAANEEIPMLIRLFRYYAG*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="6">
          <exon_coordinates>
            <exon e_start="123147" e_stop="123052"/>
            <exon e_start="121369" e_stop="121229"/>
            <exon e_start="121149" e_stop="121012"/>
            <exon e_start="120559" e_stop="120036"/>
            <exon e_start="119816" e_stop="119730"/>
            <exon e_start="119086" e_stop="118913"/>
            <exon e_start="118833" e_stop="118696"/>
            <exon e_start="118415" e_stop="118278"/>
            <exon e_start="118168" e_stop="118107"/>
            <exon e_start="118027" e_stop="117463"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.000" acc_prob="0.901" e_score="1.000"/>
          <exon-intron don_prob="0.986" acc_prob="0.750" e_score="1.000"/>
          <exon-intron don_prob="0.000" acc_prob="0.922" e_score="1.000"/>
          <exon-intron don_prob="0.959" acc_prob="0.980" e_score="1.000"/>
          <exon-intron don_prob="0.996" acc_prob="1.000" e_score="1.000"/>
          <exon-intron don_prob="0.933" acc_prob="0.857" e_score="1.000"/>
          <exon-intron don_prob="0.997" acc_prob="0.996" e_score="1.000"/>
          <exon-intron don_prob="0.961" acc_prob="0.997" e_score="1.000"/>
          <exon-intron don_prob="0.995" acc_prob="0.920" e_score="1.000"/>
          <exon-only e_score="0.998"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="123147" e_stop="123052" e_length="96"/>
          </exon>
          <intron i_serial="1" don_prob="0.000" acc_prob="0.901">
            <gDNA_intron_boundary i_start="123051" i_stop="121370" i_length="1682"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="121369" e_stop="121229" e_length="141"/>
          </exon>
          <intron i_serial="2" don_prob="0.986" acc_prob="0.750">
            <gDNA_intron_boundary i_start="121228" i_stop="121150" i_length="79"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="121149" e_stop="121012" e_length="138"/>
          </exon>
          <intron i_serial="3" don_prob="0.000" acc_prob="0.922">
            <gDNA_intron_boundary i_start="121011" i_stop="120560" i_length="452"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="120559" e_stop="120036" e_length="524"/>
          </exon>
          <intron i_serial="4" don_prob="0.959" acc_prob="0.980">
            <gDNA_intron_boundary i_start="120035" i_stop="119817" i_length="219"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="119816" e_stop="119730" e_length="87"/>
          </exon>
          <intron i_serial="5" don_prob="0.996" acc_prob="1.000">
            <gDNA_intron_boundary i_start="119729" i_stop="119087" i_length="643"/>
          </intron>
          <exon e_serial="6" e_score="1.000">
            <gDNA_exon_boundary e_start="119086" e_stop="118913" e_length="174"/>
          </exon>
          <intron i_serial="6" don_prob="0.933" acc_prob="0.857">
            <gDNA_intron_boundary i_start="118912" i_stop="118834" i_length="79"/>
          </intron>
          <exon e_serial="7" e_score="1.000">
            <gDNA_exon_boundary e_start="118833" e_stop="118696" e_length="138"/>
          </exon>
          <intron i_serial="7" don_prob="0.997" acc_prob="0.996">
            <gDNA_intron_boundary i_start="118695" i_stop="118416" i_length="280"/>
          </intron>
          <exon e_serial="8" e_score="1.000">
            <gDNA_exon_boundary e_start="118415" e_stop="118278" e_length="138"/>
          </exon>
          <intron i_serial="8" don_prob="0.961" acc_prob="0.997">
            <gDNA_intron_boundary i_start="118277" i_stop="118169" i_length="109"/>
          </intron>
          <exon e_serial="9" e_score="1.000">
            <gDNA_exon_boundary e_start="118168" e_stop="118107" e_length="62"/>
          </exon>
          <intron i_serial="9" don_prob="0.995" acc_prob="0.920">
            <gDNA_intron_boundary i_start="118106" i_stop="118028" i_length="79"/>
          </intron>
          <exon e_serial="10" e_score="0.998">
            <gDNA_exon_boundary e_start="118027" e_stop="117463" e_length="565"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="123147" stop="123052"/>
              <exon start="121369" stop="121229"/>
              <exon start="121149" stop="121012"/>
              <exon start="120559" stop="120090"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E727424" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="123145" stop="123052"/>
              <exon start="121369" stop="121229"/>
              <exon start="121149" stop="121012"/>
              <exon start="120559" stop="120410"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E726097" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="123139" stop="123052"/>
              <exon start="121369" stop="121229"/>
              <exon start="121149" stop="121027"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E217486" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="120541" stop="120036"/>
              <exon start="119816" stop="119730"/>
              <exon start="119086" stop="118942"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E370665" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="120541" stop="120036"/>
              <exon start="119816" stop="119767"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E271439" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="120503" stop="120036"/>
              <exon start="119816" stop="119790"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E249362" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="120491" stop="120036"/>
              <exon start="119816" stop="119781"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E314892" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="120491" stop="120090"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E314995" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="120390" stop="120100"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E257422" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="120193" stop="120036"/>
              <exon start="119816" stop="119730"/>
              <exon start="119086" stop="118913"/>
              <exon start="118833" stop="118725"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E249288" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="120149" stop="120036"/>
              <exon start="119816" stop="119730"/>
              <exon start="119086" stop="118913"/>
              <exon start="118833" stop="118738"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E275091" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="120040" stop="120036"/>
              <exon start="119816" stop="119730"/>
              <exon start="119086" stop="118913"/>
              <exon start="118833" stop="118696"/>
              <exon start="118415" stop="118278"/>
              <exon start="118168" stop="118107"/>
              <exon start="118027" stop="117873"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E261730" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="119790" stop="119730"/>
              <exon start="119086" stop="118913"/>
              <exon start="118833" stop="118696"/>
              <exon start="118415" stop="118278"/>
              <exon start="118168" stop="118155"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E255543" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="119055" stop="118913"/>
              <exon start="118833" stop="118696"/>
              <exon start="118415" stop="118353"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E229381" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="119027" stop="118913"/>
              <exon start="118833" stop="118696"/>
              <exon start="118415" stop="118360"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E229740" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="118792" stop="118696"/>
              <exon start="118415" stop="118278"/>
              <exon start="118168" stop="118107"/>
              <exon start="118027" stop="117589"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E573825" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="118784" stop="118696"/>
              <exon start="118415" stop="118278"/>
              <exon start="118168" stop="118107"/>
              <exon start="118027" stop="117481"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E542978" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="118701" stop="118696"/>
              <exon start="118415" stop="118278"/>
              <exon start="118168" stop="118132"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E264242" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="118376" stop="118278"/>
              <exon start="118168" stop="118107"/>
              <exon start="118027" stop="117694"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E264163" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="118348" stop="118278"/>
              <exon start="118168" stop="118107"/>
              <exon start="118027" stop="117463"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E355126" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="118348" stop="118278"/>
              <exon start="118168" stop="118107"/>
              <exon start="118027" stop="117463"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E349395" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="118167" stop="118107"/>
              <exon start="118027" stop="117517"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E202862" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="118167" stop="118107"/>
              <exon start="118027" stop="117726"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E281400" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="118135" stop="118107"/>
              <exon start="118027" stop="117585"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E733861" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="118026" stop="117610"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E256282" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="21" AGS_serial="6" gDNA_strand="-"/>
          <translation>
            <gDNA_template>CAGAACAATTTTGAATGCTCTCTCTTTATGTAAACATTATGCTTTGTATGAAATAAAGGTCCTCTAAGATTTCTGTAAGCAACTTTGAAAATTTCT : TTAGGTACTCCAACTACTGGAGAAAGGGTATCAGAAGGTTTTGTAGCAGTGCCGTGGTGCATGAAGAGCCAATCACTCCACCTGTTGAGGTTAAATATAATCAGCTTCTCATTAATGGACAGTTTGTTGATGCAGCCTCAG : GGAAGACATTTCCTACATTTGACCCTCGAACAGGCGAAGCTATTACTACGGTTGCGGAGGCCGACACTGAAGATGTCAACCGTGCAGTCTTTGCTGCCCGTAAAGCATTTGATGAAGGACCATGGCCTAAAATGACTT : GAAAGGTCATGTATAATGTTGCAGTTTGCTGATTTGCTTGAGAGGCACAGTGATGAACTTGCAGCACTTGAGACTTGGGATAAGGGAAAGCCTTACGAACAAGCTGCAAATGAAGAAATACCAATGCTCATTCGTCTTTTCAGATACTATGCTGGTTAAGAAAATAAGAAAAATGGCGTTATGTTTCCTTTTGACAGTTTAATAACCACTTATTGTATATCAATTGACGTTCTAATGTTTGCTGAATCACCCTAAATGCTTTTCTAAGTATTTCTGCTTACATTTCTTATTCAGGTTGGGCTGATAAAATTCATGGTCTTACAGCTCCTGCTGACAGTTTGCACCATGTTCAGACCCTGCATGAGCCAATTGGTGTTGCAGGACAGATAATACCCTGGAATTTTCCGTTATTAATGTTCGCCTGGAAAGTTGGCCCTGCACTTGCTTGTGGTAACACTGTCGTACTAAAACCAGCAGAACAAACACCACTCTCTGCCCTGTATGTGTCAAAGTTATTCCATGAG : GTTGGACTTCCCCCTGGAGTCTTAAATGTCATTCCTGGATCCGGTAGTGCAGGTGCAGATCTTGCCAGTCATATGGATGTCGATAAG : ATTGCTTTTACAGGGTCCACAGAAACTGGTAAAGCTGTCGTAGGTGCAGCTGCAAAGAGCAACCTAAAACCTGTGACATTGGAGCTCGGAGGAAAATCTCCTTTCATCATTTGTGAAGATGCAGACGTTGATAAAGCTGTTGAGTTGGCTCATTCTGCTGTTTTCTTTAACCAG : GGACAATGCTGCTGTGCTGGATCTCGGACATTCGTACATGAAAGAGTATATGATGAATTTGTGGAGAAAGCCAAAGCTCGTGCTTTAAAACGCATTGTTGGAGACCCTTTCAAGAAGGGAGTTGAACAAGGTCCGCAG : ATTGATACAGAGCAATTTGAGAAGATCCTGAAGTACATAAAATCTGGTACTGAAAGCGGGGCTACTCTCGAGTCTGGAGGGGAAAAATTGGGTTCCAAGGGCTTCTATGTCCAACCTACTGTCTTCTCAAATGTCCAG : GATAACATGCTGATTGCCAGAGATGAGATATTTGGACCAGTGCAGTCCCTCTTGAAATTCAA : GGATGTTGAAGAGGTCATCCGAAGGGCAAACTCGTCACATTATGGGTTGGCAGCGGGTGTTTTTACCCAGAATATAGATGCAGCCAACACAATATCTCGAGCCCTTAGAGTAGGGACAGTGTGGGTTAACTGCTTTAACATCTTTGATGCTGCCATTCCGTTTGGTGGTTATAAGATGAGTGGACATGGAAGAGAGAAGGGAGTCTACAGCCTAAGTAACTACTTGCAAGTCAAAGCTATTGTTACCCCTCTGAAGAATCCAGCATGGCTGTAGTTTTCCCCCCTGCTTTCTGGTACTCCTGAGATGTCGTGCAACACGGCAATCTTGTCTTTTAGAGGTCACTTGTATACAGTGTAGATAAGACCAAAACGCTGTATTGTGTGTGTGTTATTGTTTGTTACTAACTTCTTATGATTTGATAACAATATGCAAACTTGTTTGTGTGAGACCTTTCTTGATTTCTGTAGCTCTGATGCAAAATAGGATCTTGTGTTTGAGTTTTGTGGGAATGTAATGAATTATATATAGATGTAATGTTATAATTCTATATTACTACGGTATATA</gDNA_template>
            <first_frame> Q  N  N  F  E  C  S  L  F  M  *  T  L  C  F  V  *  N  K  G  P  L  R  F  L  *  A  T  L  K  I  S  :  L  G  T  P  T  T  G  E  R  V  S  E  G  F  V  A  V  P  W  C  M  K  S  Q  S  L  H  L  L  R  L  N  I  I  S  F  S  L  M  D  S  L  L  M  Q  P  Q  :  G  R  H  F  L  H  L  T  L  E  Q  A  K  L  L  L  R  L  R  R  P  T  L  K  M  S  T  V  Q  S  L  L  P  V  K  H  L  M  K  D  H  G  L  K  *  L  :  E  R  S  C  I  M  L  Q  F  A  D  L  L  E  R  H  S  D  E  L  A  A  L  E  T  W  D  K  G  K  P  Y  E  Q  A  A  N  E  E  I  P  M  L  I  R  L  F  R  Y  Y  A  G  *  E  N  K  K  N  G  V  M  F  P  F  D  S  L  I  T  T  Y  C  I  S  I  D  V  L  M  F  A  E  S  P  *  M  L  F  *  V  F  L  L  T  F  L  I  Q  V  G  L  I  K  F  M  V  L  Q  L  L  L  T  V  C  T  M  F  R  P  C  M  S  Q  L  V  L  Q  D  R  *  Y  P  G  I  F  R  Y  *  C  S  P  G  K  L  A  L  H  L  L  V  V  T  L  S  Y  *  N  Q  Q  N  K  H  H  S  L  P  C  M  C  Q  S  Y  S  M  R :   L  D  F  P  L  E  S  *  M  S  F  L  D  P  V  V  Q  V  Q  I  L  P  V  I  W  M  S  I  R :   L  L  L  Q  G  P  Q  K  L  V  K  L  S  *  V  Q  L  Q  R  A  T  *  N  L  *  H  W  S  S  E  E  N  L  L  S  S  F  V  K  M  Q  T  L  I  K  L  L  S  W  L  I  L  L  F  S  L  T  R :   D  N  A  A  V  L  D  L  G  H  S  Y  M  K  E  Y  M  M  N  L  W  R  K  P  K  L  V  L  *  N  A  L  L  E  T  L  S  R  R  E  L  N  K  V  R  R :   L  I  Q  S  N  L  R  R  S  *  S  T  *  N  L  V  L  K  A  G  L  L  S  S  L  E  G  K  N  W  V  P  R  A  S  M  S  N  L  L  S  S  Q  M  S  R :   I  T  C  *  L  P  E  M  R  Y  L  D  Q  C  S  P  S  *  N  S   : R  M  L  K  R  S  S  E  G  Q  T  R  H  I  M  G  W  Q  R  V  F  L  P  R  I  *  M  Q  P  T  Q  Y  L  E  P  L  E  *  G  Q  C  G  L  T  A  L  T  S  L  M  L  P  F  R  L  V  V  I  R  *  V  D  M  E  E  R  R  E  S  T  A  *  V  T  T  C  K  S  K  L  L  L  P  L  *  R  I  Q  H  G  C  S  F  P  P  C  F  L  V  L  L  R  C  R  A  T  R  Q  S  C  L  L  E  V  T  C  I  Q  C  R  *  D  Q  N  A  V  L  C  V  C  Y  C  L  L  L  T  S  Y  D  L  I  T  I  C  K  L  V  C  V  R  P  F  L  I  S  V  A  L  M  Q  N  R  I  L  C  L  S  F  V  G  M  *  *  I  I  Y  R  C  N  V  I  I  L  Y  Y  Y  G  I   </first_frame>
            <second_frame>  R  T  I  L  N  A  L  S  L  C  K  H  Y  A  L  Y  E  I  K  V  L  *  D  F  C  K  Q  L  *  K  F  L :   *  V  L  Q  L  L  E  K  G  Y  Q  K  V  L  *  Q  C  R  G  A  *  R  A  N  H  S  T  C  *  G  *  I  *  S  A  S  H  *  W  T  V  C  *  C  S  L  R :   E  D  I  S  Y  I  *  P  S  N  R  R  S  Y  Y  Y  G  C  G  G  R  H  *  R  C  Q  P  C  S  L  C  C  P  *  S  I  *  *  R  T  M  A  *  N  D  L :   K  G  H  V  *  C  C  S  L  L  I  C  L  R  G  T  V  M  N  L  Q  H  L  R  L  G  I  R  E  S  L  T  N  K  L  Q  M  K  K  Y  Q  C  S  F  V  F  S  D  T  M  L  V  K  K  I  R  K  M  A  L  C  F  L  L  T  V  *  *  P  L  I  V  Y  Q  L  T  F  *  C  L  L  N  H  P  K  C  F  S  K  Y  F  C  L  H  F  L  F  R  L  G  *  *  N  S  W  S  Y  S  S  C  *  Q  F  A  P  C  S  D  P  A  *  A  N  W  C  C  R  T  D  N  T  L  E  F  S  V  I  N  V  R  L  E  S  W  P  C  T  C  L  W  *  H  C  R  T  K  T  S  R  T  N  T  T  L  C  P  V  C  V  K  V  I  P  *   : G  W  T  S  P  W  S  L  K  C  H  S  W  I  R  *  C  R  C  R  S  C  Q  S  Y  G  C  R  *   : D  C  F  Y  R  V  H  R  N  W  *  S  C  R  R  C  S  C  K  E  Q  P  K  T  C  D  I  G  A  R  R  K  I  S  F  H  H  L  *  R  C  R  R  *  *  S  C  *  V  G  S  F  C  C  F  L  *  P   : G  T  M  L  L  C  W  I  S  D  I  R  T  *  K  S  I  *  *  I  C  G  E  S  Q  S  S  C  F  K  T  H  C  W  R  P  F  Q  E  G  S  *  T  R  S  A   : D  *  Y  R  A  I  *  E  D  P  E  V  H  K  I  W  Y  *  K  R  G  Y  S  R  V  W  R  G  K  I  G  F  Q  G  L  L  C  P  T  Y  C  L  L  K  C  P   : G  *  H  A  D  C  Q  R  *  D  I  W  T  S  A  V  P  L  E  I  Q  :  G  C  *  R  G  H  P  K  G  K  L  V  T  L  W  V  G  S  G  C  F  Y  P  E  Y  R  C  S  Q  H  N  I  S  S  P  *  S  R  D  S  V  G  *  L  L  *  H  L  *  C  C  H  S  V  W  W  L  *  D  E  W  T  W  K  R  E  G  S  L  Q  P  K  *  L  L  A  S  Q  S  Y  C  Y  P  S  E  E  S  S  M  A  V  V  F  P  P  A  F  W  Y  S  *  D  V  V  Q  H  G  N  L  V  F  *  R  S  L  V  Y  S  V  D  K  T  K  T  L  Y  C  V  C  V  I  V  C  Y  *  L  L  M  I  *  *  Q  Y  A  N  L  F  V  *  D  L  S  *  F  L  *  L  *  C  K  I  G  S  C  V  *  V  L  W  E  C  N  E  L  Y  I  D  V  M  L  *  F  Y  I  T  T  V  Y  </second_frame>
            <third_frame>   E  Q  F  *  M  L  S  L  Y  V  N  I  M  L  C  M  K  *  R  S  S  K  I  S  V  S  N  F  E  N  F   : F  R  Y  S  N  Y  W  R  K  G  I  R  R  F  C  S  S  A  V  V  H  E  E  P  I  T  P  P  V  E  V  K  Y  N  Q  L  L  I  N  G  Q  F  V  D  A  A  S   : G  K  T  F  P  T  F  D  P  R  T  G  E  A  I  T  T  V  A  E  A  D  T  E  D  V  N  R  A  V  F  A  A  R  K  A  F  D  E  G  P  W  P  K  M  T   : *  K  V  M  Y  N  V  A  V  C  *  F  A  *  E  A  Q  *  *  T  C  S  T  *  D  L  G  *  G  K  A  L  R  T  S  C  K  *  R  N  T  N  A  H  S  S  F  Q  I  L  C  W  L  R  K  *  E  K  W  R  Y  V  S  F  *  Q  F  N  N  H  L  L  Y  I  N  *  R  S  N  V  C  *  I  T  L  N  A  F  L  S  I  S  A  Y  I  S  Y  S  G  W  A  D  K  I  H  G  L  T  A  P  A  D  S  L  H  H  V  Q  T  L  H  E  P  I  G  V  A  G  Q  I  I  P  W  N  F  P  L  L  M  F  A  W  K  V  G  P  A  L  A  C  G  N  T  V  V  L  K  P  A  E  Q  T  P  L  S  A  L  Y  V  S  K  L  F  H  E  :  V  G  L  P  P  G  V  L  N  V  I  P  G  S  G  S  A  G  A  D  L  A  S  H  M  D  V  D  K  :  I  A  F  T  G  S  T  E  T  G  K  A  V  V  G  A  A  A  K  S  N  L  K  P  V  T  L  E  L  G  G  K  S  P  F  I  I  C  E  D  A  D  V  D  K  A  V  E  L  A  H  S  A  V  F  F  N  Q  :  G  Q  C  C  C  A  G  S  R  T  F  V  H  E  R  V  Y  D  E  F  V  E  K  A  K  A  R  A  L  K  R  I  V  G  D  P  F  K  K  G  V  E  Q  G  P  Q  :  I  D  T  E  Q  F  E  K  I  L  K  Y  I  K  S  G  T  E  S  G  A  T  L  E  S  G  G  E  K  L  G  S  K  G  F  Y  V  Q  P  T  V  F  S  N  V  Q  :  D  N  M  L  I  A  R  D  E  I  F  G  P  V  Q  S  L  L  K  F  K :   D  V  E  E  V  I  R  R  A  N  S  S  H  Y  G  L  A  A  G  V  F  T  Q  N  I  D  A  A  N  T  I  S  R  A  L  R  V  G  T  V  W  V  N  C  F  N  I  F  D  A  A  I  P  F  G  G  Y  K  M  S  G  H  G  R  E  K  G  V  Y  S  L  S  N  Y  L  Q  V  K  A  I  V  T  P  L  K  N  P  A  W  L  *  F  S  P  L  L  S  G  T  P  E  M  S  C  N  T  A  I  L  S  F  R  G  H  L  Y  T  V  *  I  R  P  K  R  C  I  V  C  V  L  L  F  V  T  N  F  L  *  F  D  N  N  M  Q  T  C  L  C  E  T  F  L  D  F  C  S  S  D  A  K  *  D  L  V  F  E  F  C  G  N  V  M  N  Y  I  *  M  *  C  Y  N  S  I  L  L  R  Y  I </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02HBa0236E02.1" strand="-"/>
                <serials PGL_serial="21" AGS_serial="6" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="120314" stop="120036"/>
                    <exon start="119816" stop="119730"/>
                    <exon start="119086" stop="118913"/>
                    <exon start="118833" stop="118696"/>
                    <exon start="118415" stop="118278"/>
                    <exon start="118168" stop="118107"/>
                    <exon start="118027" stop="117754"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>1149</number_coding_nucleotides>
                  <number_encoded_amino_acids>383</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>ITLNAFLSISAYISYSGWADKIHGLTAPADSLHHVQTLHEPIGVAGQIIPWNFPLLMFAWKVGPALACGNTVVLKPAEQTPLSALYVSKLFHEVGLPPGVLNVIPGSGSAGADLASHMDVDKIAFTGSTETGKAVVGAAAKSNLKPVTLELGGKSPFIICEDADVDKAVELAHSAVFFNQGQCCCAGSRTFVHERVYDEFVEKAKARALKRIVGDPFKKGVEQGPQIDTEQFEKILKYIKSGTESGATLESGGEKLGSKGFYVQPTVFSNVQDNMLIARDEIFGPVQSLLKFKDVEEVIRRANSSHYGLAAGVFTQNIDAANTISRALRVGTVWVNCFNIFDAAIPFGGYKMSGHGREKGVYSLSNYLQVKAIVTPLKNPAWL*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C02HBa0236E02.1" strand="-"/>
                <serials PGL_serial="21" AGS_serial="6" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="123091" stop="123052"/>
                    <exon start="121369" stop="121229"/>
                    <exon start="121149" stop="121012"/>
                    <exon start="120559" stop="120558"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>318</number_coding_nucleotides>
                  <number_encoded_amino_acids>106</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>RSSKISVSNFENFFRYSNYWRKGIRRFCSSAVVHEEPITPPVEVKYNQLLINGQFVDAASGKTFPTFDPRTGEAITTVAEADTEDVNRAVFAARKAFDEGPWPKMT*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="7">
          <exon_coordinates>
            <exon e_start="123139" e_stop="123052"/>
            <exon e_start="121369" e_stop="121229"/>
            <exon e_start="121149" e_stop="121007"/>
            <exon e_start="120559" e_stop="120406"/>
            <exon e_start="120265" e_stop="120036"/>
            <exon e_start="119816" e_stop="119730"/>
            <exon e_start="119086" e_stop="118913"/>
            <exon e_start="118833" e_stop="118696"/>
            <exon e_start="118415" e_stop="118278"/>
            <exon e_start="118168" e_stop="118107"/>
            <exon e_start="118027" e_stop="117463"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.000" acc_prob="0.901" e_score="1.000"/>
          <exon-intron don_prob="0.986" acc_prob="0.750" e_score="1.000"/>
          <exon-intron don_prob="0.793" acc_prob="0.922" e_score="1.000"/>
          <exon-intron don_prob="0.000" acc_prob="0.997" e_score="1.000"/>
          <exon-intron don_prob="0.959" acc_prob="0.980" e_score="1.000"/>
          <exon-intron don_prob="0.996" acc_prob="1.000" e_score="1.000"/>
          <exon-intron don_prob="0.933" acc_prob="0.857" e_score="1.000"/>
          <exon-intron don_prob="0.997" acc_prob="0.996" e_score="1.000"/>
          <exon-intron don_prob="0.961" acc_prob="0.997" e_score="1.000"/>
          <exon-intron don_prob="0.995" acc_prob="0.920" e_score="1.000"/>
          <exon-only e_score="0.998"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="123139" e_stop="123052" e_length="88"/>
          </exon>
          <intron i_serial="1" don_prob="0.000" acc_prob="0.901">
            <gDNA_intron_boundary i_start="123051" i_stop="121370" i_length="1682"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="121369" e_stop="121229" e_length="141"/>
          </exon>
          <intron i_serial="2" don_prob="0.986" acc_prob="0.750">
            <gDNA_intron_boundary i_start="121228" i_stop="121150" i_length="79"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="121149" e_stop="121007" e_length="143"/>
          </exon>
          <intron i_serial="3" don_prob="0.793" acc_prob="0.922">
            <gDNA_intron_boundary i_start="121006" i_stop="120560" i_length="447"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="120559" e_stop="120406" e_length="154"/>
          </exon>
          <intron i_serial="4" don_prob="0.000" acc_prob="0.997">
            <gDNA_intron_boundary i_start="120405" i_stop="120266" i_length="140"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="120265" e_stop="120036" e_length="230"/>
          </exon>
          <intron i_serial="5" don_prob="0.959" acc_prob="0.980">
            <gDNA_intron_boundary i_start="120035" i_stop="119817" i_length="219"/>
          </intron>
          <exon e_serial="6" e_score="1.000">
            <gDNA_exon_boundary e_start="119816" e_stop="119730" e_length="87"/>
          </exon>
          <intron i_serial="6" don_prob="0.996" acc_prob="1.000">
            <gDNA_intron_boundary i_start="119729" i_stop="119087" i_length="643"/>
          </intron>
          <exon e_serial="7" e_score="1.000">
            <gDNA_exon_boundary e_start="119086" e_stop="118913" e_length="174"/>
          </exon>
          <intron i_serial="7" don_prob="0.933" acc_prob="0.857">
            <gDNA_intron_boundary i_start="118912" i_stop="118834" i_length="79"/>
          </intron>
          <exon e_serial="8" e_score="1.000">
            <gDNA_exon_boundary e_start="118833" e_stop="118696" e_length="138"/>
          </exon>
          <intron i_serial="8" don_prob="0.997" acc_prob="0.996">
            <gDNA_intron_boundary i_start="118695" i_stop="118416" i_length="280"/>
          </intron>
          <exon e_serial="9" e_score="1.000">
            <gDNA_exon_boundary e_start="118415" e_stop="118278" e_length="138"/>
          </exon>
          <intron i_serial="9" don_prob="0.961" acc_prob="0.997">
            <gDNA_intron_boundary i_start="118277" i_stop="118169" i_length="109"/>
          </intron>
          <exon e_serial="10" e_score="1.000">
            <gDNA_exon_boundary e_start="118168" e_stop="118107" e_length="62"/>
          </exon>
          <intron i_serial="10" don_prob="0.995" acc_prob="0.920">
            <gDNA_intron_boundary i_start="118106" i_stop="118028" i_length="79"/>
          </intron>
          <exon e_serial="11" e_score="0.998">
            <gDNA_exon_boundary e_start="118027" e_stop="117463" e_length="565"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="123139" stop="123052"/>
              <exon start="121369" stop="121229"/>
              <exon start="121149" stop="121027"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E217486" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="123114" stop="123052"/>
              <exon start="121369" stop="121229"/>
              <exon start="121149" stop="121007"/>
              <exon start="120559" stop="120406"/>
              <exon start="120265" stop="120036"/>
              <exon start="119816" stop="119735"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E542979" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="123113" stop="123052"/>
              <exon start="121369" stop="121229"/>
              <exon start="121149" stop="121007"/>
              <exon start="120559" stop="120406"/>
              <exon start="120265" stop="120197"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E302394" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="123091" stop="123052"/>
              <exon start="121369" stop="121229"/>
              <exon start="121149" stop="121007"/>
              <exon start="120559" stop="120407"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E271849" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="120193" stop="120036"/>
              <exon start="119816" stop="119730"/>
              <exon start="119086" stop="118913"/>
              <exon start="118833" stop="118725"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E249288" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="120149" stop="120036"/>
              <exon start="119816" stop="119730"/>
              <exon start="119086" stop="118913"/>
              <exon start="118833" stop="118738"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E275091" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="120040" stop="120036"/>
              <exon start="119816" stop="119730"/>
              <exon start="119086" stop="118913"/>
              <exon start="118833" stop="118696"/>
              <exon start="118415" stop="118278"/>
              <exon start="118168" stop="118107"/>
              <exon start="118027" stop="117873"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E261730" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="119790" stop="119730"/>
              <exon start="119086" stop="118913"/>
              <exon start="118833" stop="118696"/>
              <exon start="118415" stop="118278"/>
              <exon start="118168" stop="118155"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E255543" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="119055" stop="118913"/>
              <exon start="118833" stop="118696"/>
              <exon start="118415" stop="118353"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E229381" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="119027" stop="118913"/>
              <exon start="118833" stop="118696"/>
              <exon start="118415" stop="118360"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E229740" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="118792" stop="118696"/>
              <exon start="118415" stop="118278"/>
              <exon start="118168" stop="118107"/>
              <exon start="118027" stop="117589"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E573825" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="118784" stop="118696"/>
              <exon start="118415" stop="118278"/>
              <exon start="118168" stop="118107"/>
              <exon start="118027" stop="117481"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E542978" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="118701" stop="118696"/>
              <exon start="118415" stop="118278"/>
              <exon start="118168" stop="118132"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E264242" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="118376" stop="118278"/>
              <exon start="118168" stop="118107"/>
              <exon start="118027" stop="117694"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E264163" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="118348" stop="118278"/>
              <exon start="118168" stop="118107"/>
              <exon start="118027" stop="117463"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E355126" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="118348" stop="118278"/>
              <exon start="118168" stop="118107"/>
              <exon start="118027" stop="117463"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E349395" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="118167" stop="118107"/>
              <exon start="118027" stop="117517"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E202862" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="118167" stop="118107"/>
              <exon start="118027" stop="117726"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E281400" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="118135" stop="118107"/>
              <exon start="118027" stop="117585"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E733861" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="118026" stop="117610"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E256282" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="21" AGS_serial="7" gDNA_strand="-"/>
          <translation>
            <gDNA_template>TTTTGAATGCTCTCTCTTTATGTAAACATTATGCTTTGTATGAAATAAAGGTCCTCTAAGATTTCTGTAAGCAACTTTGAAAATTTCT : TTAGGTACTCCAACTACTGGAGAAAGGGTATCAGAAGGTTTTGTAGCAGTGCCGTGGTGCATGAAGAGCCAATCACTCCACCTGTTGAGGTTAAATATAATCAGCTTCTCATTAATGGACAGTTTGTTGATGCAGCCTCAG : GGAAGACATTTCCTACATTTGACCCTCGAACAGGCGAAGCTATTACTACGGTTGCGGAGGCCGACACTGAAGATGTCAACCGTGCAGTCTTTGCTGCCCGTAAAGCATTTGATGAAGGACCATGGCCTAAAATGACTTGTGCA : GAAAGGTCATGTATAATGTTGCAGTTTGCTGATTTGCTTGAGAGGCACAGTGATGAACTTGCAGCACTTGAGACTTGGGATAAGGGAAAGCCTTACGAACAAGCTGCAAATGAAGAAATACCAATGCTCATTCGTCTTTTCAGATACTATGCTG : GTTGGGCTGATAAAATTCATGGTCTTACAGCTCCTGCTGACAGTTTGCACCATGTTCAGACCCTGCATGAGCCAATTGGTGTTGCAGGACAGATAATACCCTGGAATTTTCCGTTATTAATGTTCGCCTGGAAAGTTGGCCCTGCACTTGCTTGTGGTAACACTGTCGTACTAAAACCAGCAGAACAAACACCACTCTCTGCCCTGTATGTGTCAAAGTTATTCCATGAG : GTTGGACTTCCCCCTGGAGTCTTAAATGTCATTCCTGGATCCGGTAGTGCAGGTGCAGATCTTGCCAGTCATATGGATGTCGATAAG : ATTGCTTTTACAGGGTCCACAGAAACTGGTAAAGCTGTCGTAGGTGCAGCTGCAAAGAGCAACCTAAAACCTGTGACATTGGAGCTCGGAGGAAAATCTCCTTTCATCATTTGTGAAGATGCAGACGTTGATAAAGCTGTTGAGTTGGCTCATTCTGCTGTTTTCTTTAACCAG : GGACAATGCTGCTGTGCTGGATCTCGGACATTCGTACATGAAAGAGTATATGATGAATTTGTGGAGAAAGCCAAAGCTCGTGCTTTAAAACGCATTGTTGGAGACCCTTTCAAGAAGGGAGTTGAACAAGGTCCGCAG : ATTGATACAGAGCAATTTGAGAAGATCCTGAAGTACATAAAATCTGGTACTGAAAGCGGGGCTACTCTCGAGTCTGGAGGGGAAAAATTGGGTTCCAAGGGCTTCTATGTCCAACCTACTGTCTTCTCAAATGTCCAG : GATAACATGCTGATTGCCAGAGATGAGATATTTGGACCAGTGCAGTCCCTCTTGAAATTCAA : GGATGTTGAAGAGGTCATCCGAAGGGCAAACTCGTCACATTATGGGTTGGCAGCGGGTGTTTTTACCCAGAATATAGATGCAGCCAACACAATATCTCGAGCCCTTAGAGTAGGGACAGTGTGGGTTAACTGCTTTAACATCTTTGATGCTGCCATTCCGTTTGGTGGTTATAAGATGAGTGGACATGGAAGAGAGAAGGGAGTCTACAGCCTAAGTAACTACTTGCAAGTCAAAGCTATTGTTACCCCTCTGAAGAATCCAGCATGGCTGTAGTTTTCCCCCCTGCTTTCTGGTACTCCTGAGATGTCGTGCAACACGGCAATCTTGTCTTTTAGAGGTCACTTGTATACAGTGTAGATAAGACCAAAACGCTGTATTGTGTGTGTGTTATTGTTTGTTACTAACTTCTTATGATTTGATAACAATATGCAAACTTGTTTGTGTGAGACCTTTCTTGATTTCTGTAGCTCTGATGCAAAATAGGATCTTGTGTTTGAGTTTTGTGGGAATGTAATGAATTATATATAGATGTAATGTTATAATTCTATATTACTACGGTATATA</gDNA_template>
            <first_frame> F  *  M  L  S  L  Y  V  N  I  M  L  C  M  K  *  R  S  S  K  I  S  V  S  N  F  E  N  F   : F  R  Y  S  N  Y  W  R  K  G  I  R  R  F  C  S  S  A  V  V  H  E  E  P  I  T  P  P  V  E  V  K  Y  N  Q  L  L  I  N  G  Q  F  V  D  A  A  S   : G  K  T  F  P  T  F  D  P  R  T  G  E  A  I  T  T  V  A  E  A  D  T  E  D  V  N  R  A  V  F  A  A  R  K  A  F  D  E  G  P  W  P  K  M  T  C  A  :  E  R  S  C  I  M  L  Q  F  A  D  L  L  E  R  H  S  D  E  L  A  A  L  E  T  W  D  K  G  K  P  Y  E  Q  A  A  N  E  E  I  P  M  L  I  R  L  F  R  Y  Y  A   : G  W  A  D  K  I  H  G  L  T  A  P  A  D  S  L  H  H  V  Q  T  L  H  E  P  I  G  V  A  G  Q  I  I  P  W  N  F  P  L  L  M  F  A  W  K  V  G  P  A  L  A  C  G  N  T  V  V  L  K  P  A  E  Q  T  P  L  S  A  L  Y  V  S  K  L  F  H  E  :  V  G  L  P  P  G  V  L  N  V  I  P  G  S  G  S  A  G  A  D  L  A  S  H  M  D  V  D  K  :  I  A  F  T  G  S  T  E  T  G  K  A  V  V  G  A  A  A  K  S  N  L  K  P  V  T  L  E  L  G  G  K  S  P  F  I  I  C  E  D  A  D  V  D  K  A  V  E  L  A  H  S  A  V  F  F  N  Q  :  G  Q  C  C  C  A  G  S  R  T  F  V  H  E  R  V  Y  D  E  F  V  E  K  A  K  A  R  A  L  K  R  I  V  G  D  P  F  K  K  G  V  E  Q  G  P  Q  :  I  D  T  E  Q  F  E  K  I  L  K  Y  I  K  S  G  T  E  S  G  A  T  L  E  S  G  G  E  K  L  G  S  K  G  F  Y  V  Q  P  T  V  F  S  N  V  Q  :  D  N  M  L  I  A  R  D  E  I  F  G  P  V  Q  S  L  L  K  F  K :   D  V  E  E  V  I  R  R  A  N  S  S  H  Y  G  L  A  A  G  V  F  T  Q  N  I  D  A  A  N  T  I  S  R  A  L  R  V  G  T  V  W  V  N  C  F  N  I  F  D  A  A  I  P  F  G  G  Y  K  M  S  G  H  G  R  E  K  G  V  Y  S  L  S  N  Y  L  Q  V  K  A  I  V  T  P  L  K  N  P  A  W  L  *  F  S  P  L  L  S  G  T  P  E  M  S  C  N  T  A  I  L  S  F  R  G  H  L  Y  T  V  *  I  R  P  K  R  C  I  V  C  V  L  L  F  V  T  N  F  L  *  F  D  N  N  M  Q  T  C  L  C  E  T  F  L  D  F  C  S  S  D  A  K  *  D  L  V  F  E  F  C  G  N  V  M  N  Y  I  *  M  *  C  Y  N  S  I  L  L  R  Y  I </first_frame>
            <second_frame>  F  E  C  S  L  F  M  *  T  L  C  F  V  *  N  K  G  P  L  R  F  L  *  A  T  L  K  I  S  :  L  G  T  P  T  T  G  E  R  V  S  E  G  F  V  A  V  P  W  C  M  K  S  Q  S  L  H  L  L  R  L  N  I  I  S  F  S  L  M  D  S  L  L  M  Q  P  Q  :  G  R  H  F  L  H  L  T  L  E  Q  A  K  L  L  L  R  L  R  R  P  T  L  K  M  S  T  V  Q  S  L  L  P  V  K  H  L  M  K  D  H  G  L  K  *  L  V  Q :   K  G  H  V  *  C  C  S  L  L  I  C  L  R  G  T  V  M  N  L  Q  H  L  R  L  G  I  R  E  S  L  T  N  K  L  Q  M  K  K  Y  Q  C  S  F  V  F  S  D  T  M  L  :  V  G  L  I  K  F  M  V  L  Q  L  L  L  T  V  C  T  M  F  R  P  C  M  S  Q  L  V  L  Q  D  R  *  Y  P  G  I  F  R  Y  *  C  S  P  G  K  L  A  L  H  L  L  V  V  T  L  S  Y  *  N  Q  Q  N  K  H  H  S  L  P  C  M  C  Q  S  Y  S  M  R :   L  D  F  P  L  E  S  *  M  S  F  L  D  P  V  V  Q  V  Q  I  L  P  V  I  W  M  S  I  R :   L  L  L  Q  G  P  Q  K  L  V  K  L  S  *  V  Q  L  Q  R  A  T  *  N  L  *  H  W  S  S  E  E  N  L  L  S  S  F  V  K  M  Q  T  L  I  K  L  L  S  W  L  I  L  L  F  S  L  T  R :   D  N  A  A  V  L  D  L  G  H  S  Y  M  K  E  Y  M  M  N  L  W  R  K  P  K  L  V  L  *  N  A  L  L  E  T  L  S  R  R  E  L  N  K  V  R  R :   L  I  Q  S  N  L  R  R  S  *  S  T  *  N  L  V  L  K  A  G  L  L  S  S  L  E  G  K  N  W  V  P  R  A  S  M  S  N  L  L  S  S  Q  M  S  R :   I  T  C  *  L  P  E  M  R  Y  L  D  Q  C  S  P  S  *  N  S   : R  M  L  K  R  S  S  E  G  Q  T  R  H  I  M  G  W  Q  R  V  F  L  P  R  I  *  M  Q  P  T  Q  Y  L  E  P  L  E  *  G  Q  C  G  L  T  A  L  T  S  L  M  L  P  F  R  L  V  V  I  R  *  V  D  M  E  E  R  R  E  S  T  A  *  V  T  T  C  K  S  K  L  L  L  P  L  *  R  I  Q  H  G  C  S  F  P  P  C  F  L  V  L  L  R  C  R  A  T  R  Q  S  C  L  L  E  V  T  C  I  Q  C  R  *  D  Q  N  A  V  L  C  V  C  Y  C  L  L  L  T  S  Y  D  L  I  T  I  C  K  L  V  C  V  R  P  F  L  I  S  V  A  L  M  Q  N  R  I  L  C  L  S  F  V  G  M  *  *  I  I  Y  R  C  N  V  I  I  L  Y  Y  Y  G  I   </second_frame>
            <third_frame>   L  N  A  L  S  L  C  K  H  Y  A  L  Y  E  I  K  V  L  *  D  F  C  K  Q  L  *  K  F  L :   *  V  L  Q  L  L  E  K  G  Y  Q  K  V  L  *  Q  C  R  G  A  *  R  A  N  H  S  T  C  *  G  *  I  *  S  A  S  H  *  W  T  V  C  *  C  S  L  R :   E  D  I  S  Y  I  *  P  S  N  R  R  S  Y  Y  Y  G  C  G  G  R  H  *  R  C  Q  P  C  S  L  C  C  P  *  S  I  *  *  R  T  M  A  *  N  D  L  C   : R  K  V  M  Y  N  V  A  V  C  *  F  A  *  E  A  Q  *  *  T  C  S  T  *  D  L  G  *  G  K  A  L  R  T  S  C  K  *  R  N  T  N  A  H  S  S  F  Q  I  L  C  W :   L  G  *  *  N  S  W  S  Y  S  S  C  *  Q  F  A  P  C  S  D  P  A  *  A  N  W  C  C  R  T  D  N  T  L  E  F  S  V  I  N  V  R  L  E  S  W  P  C  T  C  L  W  *  H  C  R  T  K  T  S  R  T  N  T  T  L  C  P  V  C  V  K  V  I  P  *   : G  W  T  S  P  W  S  L  K  C  H  S  W  I  R  *  C  R  C  R  S  C  Q  S  Y  G  C  R  *   : D  C  F  Y  R  V  H  R  N  W  *  S  C  R  R  C  S  C  K  E  Q  P  K  T  C  D  I  G  A  R  R  K  I  S  F  H  H  L  *  R  C  R  R  *  *  S  C  *  V  G  S  F  C  C  F  L  *  P   : G  T  M  L  L  C  W  I  S  D  I  R  T  *  K  S  I  *  *  I  C  G  E  S  Q  S  S  C  F  K  T  H  C  W  R  P  F  Q  E  G  S  *  T  R  S  A   : D  *  Y  R  A  I  *  E  D  P  E  V  H  K  I  W  Y  *  K  R  G  Y  S  R  V  W  R  G  K  I  G  F  Q  G  L  L  C  P  T  Y  C  L  L  K  C  P   : G  *  H  A  D  C  Q  R  *  D  I  W  T  S  A  V  P  L  E  I  Q  :  G  C  *  R  G  H  P  K  G  K  L  V  T  L  W  V  G  S  G  C  F  Y  P  E  Y  R  C  S  Q  H  N  I  S  S  P  *  S  R  D  S  V  G  *  L  L  *  H  L  *  C  C  H  S  V  W  W  L  *  D  E  W  T  W  K  R  E  G  S  L  Q  P  K  *  L  L  A  S  Q  S  Y  C  Y  P  S  E  E  S  S  M  A  V  V  F  P  P  A  F  W  Y  S  *  D  V  V  Q  H  G  N  L  V  F  *  R  S  L  V  Y  S  V  D  K  T  K  T  L  Y  C  V  C  V  I  V  C  Y  *  L  L  M  I  *  *  Q  Y  A  N  L  F  V  *  D  L  S  *  F  L  *  L  *  C  K  I  G  S  C  V  *  V  L  W  E  C  N  E  L  Y  I  D  V  M  L  *  F  Y  I  T  T  V  Y  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02HBa0236E02.1" strand="-"/>
                <serials PGL_serial="21" AGS_serial="7" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="123091" stop="123052"/>
                    <exon start="121369" stop="121229"/>
                    <exon start="121149" stop="121007"/>
                    <exon start="120559" stop="120406"/>
                    <exon start="120265" stop="120036"/>
                    <exon start="119816" stop="119730"/>
                    <exon start="119086" stop="118913"/>
                    <exon start="118833" stop="118696"/>
                    <exon start="118415" stop="118278"/>
                    <exon start="118168" stop="118107"/>
                    <exon start="118027" stop="117754"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>1578</number_coding_nucleotides>
                  <number_encoded_amino_acids>526</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>RSSKISVSNFENFFRYSNYWRKGIRRFCSSAVVHEEPITPPVEVKYNQLLINGQFVDAASGKTFPTFDPRTGEAITTVAEADTEDVNRAVFAARKAFDEGPWPKMTCAERSCIMLQFADLLERHSDELAALETWDKGKPYEQAANEEIPMLIRLFRYYAGWADKIHGLTAPADSLHHVQTLHEPIGVAGQIIPWNFPLLMFAWKVGPALACGNTVVLKPAEQTPLSALYVSKLFHEVGLPPGVLNVIPGSGSAGADLASHMDVDKIAFTGSTETGKAVVGAAAKSNLKPVTLELGGKSPFIICEDADVDKAVELAHSAVFFNQGQCCCAGSRTFVHERVYDEFVEKAKARALKRIVGDPFKKGVEQGPQIDTEQFEKILKYIKSGTESGATLESGGEKLGSKGFYVQPTVFSNVQDNMLIARDEIFGPVQSLLKFKDVEEVIRRANSSHYGLAAGVFTQNIDAANTISRALRVGTVWVNCFNIFDAAIPFGGYKMSGHGREKGVYSLSNYLQVKAIVTPLKNPAWL*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="8">
          <exon_coordinates>
            <exon e_start="119640" e_stop="118913"/>
            <exon e_start="118833" e_stop="118696"/>
            <exon e_start="118415" e_stop="118278"/>
            <exon e_start="118168" e_stop="118107"/>
            <exon e_start="118027" e_stop="117463"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.933" acc_prob="0.857" e_score="1.000"/>
          <exon-intron don_prob="0.997" acc_prob="0.996" e_score="1.000"/>
          <exon-intron don_prob="0.961" acc_prob="0.997" e_score="1.000"/>
          <exon-intron don_prob="0.995" acc_prob="0.920" e_score="1.000"/>
          <exon-only e_score="0.998"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="119640" e_stop="118913" e_length="728"/>
          </exon>
          <intron i_serial="1" don_prob="0.933" acc_prob="0.857">
            <gDNA_intron_boundary i_start="118912" i_stop="118834" i_length="79"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="118833" e_stop="118696" e_length="138"/>
          </exon>
          <intron i_serial="2" don_prob="0.997" acc_prob="0.996">
            <gDNA_intron_boundary i_start="118695" i_stop="118416" i_length="280"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="118415" e_stop="118278" e_length="138"/>
          </exon>
          <intron i_serial="3" don_prob="0.961" acc_prob="0.997">
            <gDNA_intron_boundary i_start="118277" i_stop="118169" i_length="109"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="118168" e_stop="118107" e_length="62"/>
          </exon>
          <intron i_serial="4" don_prob="0.995" acc_prob="0.920">
            <gDNA_intron_boundary i_start="118106" i_stop="118028" i_length="79"/>
          </intron>
          <exon e_serial="5" e_score="0.998">
            <gDNA_exon_boundary e_start="118027" e_stop="117463" e_length="565"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="119640" stop="118975"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E211596" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="119623" stop="119049"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E550826" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="119623" stop="119049"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E688547" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="119198" stop="118913"/>
              <exon start="118833" stop="118696"/>
              <exon start="118415" stop="118346"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E246306" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="119093" stop="118913"/>
              <exon start="118833" stop="118720"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E338365" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="119055" stop="118913"/>
              <exon start="118833" stop="118696"/>
              <exon start="118415" stop="118353"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E229381" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="119027" stop="118913"/>
              <exon start="118833" stop="118696"/>
              <exon start="118415" stop="118360"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E229740" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="118792" stop="118696"/>
              <exon start="118415" stop="118278"/>
              <exon start="118168" stop="118107"/>
              <exon start="118027" stop="117589"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E573825" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="118784" stop="118696"/>
              <exon start="118415" stop="118278"/>
              <exon start="118168" stop="118107"/>
              <exon start="118027" stop="117481"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E542978" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="118701" stop="118696"/>
              <exon start="118415" stop="118278"/>
              <exon start="118168" stop="118132"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E264242" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="118376" stop="118278"/>
              <exon start="118168" stop="118107"/>
              <exon start="118027" stop="117694"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E264163" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="118348" stop="118278"/>
              <exon start="118168" stop="118107"/>
              <exon start="118027" stop="117463"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E355126" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="118348" stop="118278"/>
              <exon start="118168" stop="118107"/>
              <exon start="118027" stop="117463"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E349395" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="118167" stop="118107"/>
              <exon start="118027" stop="117517"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E202862" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="118167" stop="118107"/>
              <exon start="118027" stop="117726"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E281400" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="118135" stop="118107"/>
              <exon start="118027" stop="117585"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E733861" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="118026" stop="117610"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E256282" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="21" AGS_serial="8" gDNA_strand="-"/>
          <translation>
            <gDNA_template>CCAAGGCAGTTTCAGTATCAAATTTGAAATGTTGGATTGTATAAAGGAGTGTCAGAACACGGTATTTCAGTTTCAACATATCTCTAGGTAGCAATGAAGCTATCCGTCGCTAATTCTACCCCCTCTTCCATCCCAAAGAAGATTAAAAGAAGTAAATAGCCTAATTATAGTGTCTCATTAGATAGTATAATCCACATGTAGAAAATGAAGAAAATCATATCTTTTTCTTCCAGCTTCCCCATTAAAAGTCAATAAACAACATAAAGAGGTTATGCATCCTGATGTCCTTTCAGCTTTTGTATTTCATGCTTGCTTTTATTGATGCAGCTGTGATGTGTAAAGTTTTCTGAGTGAATACTCTGGAATAGATGAGGGAGACTGAAGGAGCACTGACATCTTCTACTACTTGTTTTCGTATAGATTTAAACAGCTTGGTCCTCGACATTACTTGCATCTTTTCCCCCTGTAAAATGTTTTTTTTTGGTGATTTTTTAATTTTTCTGTGATGTCTAAATTGCGATGTGTCTCTACATCACTCCTTTTGGTGTCTACAGATTGCTTTTACAGGGTCCACAGAAACTGGTAAAGCTGTCGTAGGTGCAGCTGCAAAGAGCAACCTAAAACCTGTGACATTGGAGCTCGGAGGAAAATCTCCTTTCATCATTTGTGAAGATGCAGACGTTGATAAAGCTGTTGAGTTGGCTCATTCTGCTGTTTTCTTTAACCAG : GGACAATGCTGCTGTGCTGGATCTCGGACATTCGTACATGAAAGAGTATATGATGAATTTGTGGAGAAAGCCAAAGCTCGTGCTTTAAAACGCATTGTTGGAGACCCTTTCAAGAAGGGAGTTGAACAAGGTCCGCAG : ATTGATACAGAGCAATTTGAGAAGATCCTGAAGTACATAAAATCTGGTACTGAAAGCGGGGCTACTCTCGAGTCTGGAGGGGAAAAATTGGGTTCCAAGGGCTTCTATGTCCAACCTACTGTCTTCTCAAATGTCCAG : GATAACATGCTGATTGCCAGAGATGAGATATTTGGACCAGTGCAGTCCCTCTTGAAATTCAA : GGATGTTGAAGAGGTCATCCGAAGGGCAAACTCGTCACATTATGGGTTGGCAGCGGGTGTTTTTACCCAGAATATAGATGCAGCCAACACAATATCTCGAGCCCTTAGAGTAGGGACAGTGTGGGTTAACTGCTTTAACATCTTTGATGCTGCCATTCCGTTTGGTGGTTATAAGATGAGTGGACATGGAAGAGAGAAGGGAGTCTACAGCCTAAGTAACTACTTGCAAGTCAAAGCTATTGTTACCCCTCTGAAGAATCCAGCATGGCTGTAGTTTTCCCCCCTGCTTTCTGGTACTCCTGAGATGTCGTGCAACACGGCAATCTTGTCTTTTAGAGGTCACTTGTATACAGTGTAGATAAGACCAAAACGCTGTATTGTGTGTGTGTTATTGTTTGTTACTAACTTCTTATGATTTGATAACAATATGCAAACTTGTTTGTGTGAGACCTTTCTTGATTTCTGTAGCTCTGATGCAAAATAGGATCTTGTGTTTGAGTTTTGTGGGAATGTAATGAATTATATATAGATGTAATGTTATAATTCTATATTACTACGGTATATA</gDNA_template>
            <first_frame> P  R  Q  F  Q  Y  Q  I  *  N  V  G  L  Y  K  G  V  S  E  H  G  I  S  V  S  T  Y  L  *  V  A  M  K  L  S  V  A  N  S  T  P  S  S  I  P  K  K  I  K  R  S  K  *  P  N  Y  S  V  S  L  D  S  I  I  H  M  *  K  M  K  K  I  I  S  F  S  S  S  F  P  I  K  S  Q  *  T  T  *  R  G  Y  A  S  *  C  P  F  S  F  C  I  S  C  L  L  L  L  M  Q  L  *  C  V  K  F  S  E  *  I  L  W  N  R  *  G  R  L  K  E  H  *  H  L  L  L  L  V  F  V  *  I  *  T  A  W  S  S  T  L  L  A  S  F  P  P  V  K  C  F  F  L  V  I  F  *  F  F  C  D  V  *  I  A  M  C  L  Y  I  T  P  F  G  V  Y  R  L  L  L  Q  G  P  Q  K  L  V  K  L  S  *  V  Q  L  Q  R  A  T  *  N  L  *  H  W  S  S  E  E  N  L  L  S  S  F  V  K  M  Q  T  L  I  K  L  L  S  W  L  I  L  L  F  S  L  T  R :   D  N  A  A  V  L  D  L  G  H  S  Y  M  K  E  Y  M  M  N  L  W  R  K  P  K  L  V  L  *  N  A  L  L  E  T  L  S  R  R  E  L  N  K  V  R  R :   L  I  Q  S  N  L  R  R  S  *  S  T  *  N  L  V  L  K  A  G  L  L  S  S  L  E  G  K  N  W  V  P  R  A  S  M  S  N  L  L  S  S  Q  M  S  R :   I  T  C  *  L  P  E  M  R  Y  L  D  Q  C  S  P  S  *  N  S   : R  M  L  K  R  S  S  E  G  Q  T  R  H  I  M  G  W  Q  R  V  F  L  P  R  I  *  M  Q  P  T  Q  Y  L  E  P  L  E  *  G  Q  C  G  L  T  A  L  T  S  L  M  L  P  F  R  L  V  V  I  R  *  V  D  M  E  E  R  R  E  S  T  A  *  V  T  T  C  K  S  K  L  L  L  P  L  *  R  I  Q  H  G  C  S  F  P  P  C  F  L  V  L  L  R  C  R  A  T  R  Q  S  C  L  L  E  V  T  C  I  Q  C  R  *  D  Q  N  A  V  L  C  V  C  Y  C  L  L  L  T  S  Y  D  L  I  T  I  C  K  L  V  C  V  R  P  F  L  I  S  V  A  L  M  Q  N  R  I  L  C  L  S  F  V  G  M  *  *  I  I  Y  R  C  N  V  I  I  L  Y  Y  Y  G  I   </first_frame>
            <second_frame>  Q  G  S  F  S  I  K  F  E  M  L  D  C  I  K  E  C  Q  N  T  V  F  Q  F  Q  H  I  S  R  *  Q  *  S  Y  P  S  L  I  L  P  P  L  P  S  Q  R  R  L  K  E  V  N  S  L  I  I  V  S  H  *  I  V  *  S  T  C  R  K  *  R  K  S  Y  L  F  L  P  A  S  P  L  K  V  N  K  Q  H  K  E  V  M  H  P  D  V  L  S  A  F  V  F  H  A  C  F  Y  *  C  S  C  D  V  *  S  F  L  S  E  Y  S  G  I  D  E  G  D  *  R  S  T  D  I  F  Y  Y  L  F  S  Y  R  F  K  Q  L  G  P  R  H  Y  L  H  L  F  P  L  *  N  V  F  F  W  *  F  F  N  F  S  V  M  S  K  L  R  C  V  S  T  S  L  L  L  V  S  T  D  C  F  Y  R  V  H  R  N  W  *  S  C  R  R  C  S  C  K  E  Q  P  K  T  C  D  I  G  A  R  R  K  I  S  F  H  H  L  *  R  C  R  R  *  *  S  C  *  V  G  S  F  C  C  F  L  *  P   : G  T  M  L  L  C  W  I  S  D  I  R  T  *  K  S  I  *  *  I  C  G  E  S  Q  S  S  C  F  K  T  H  C  W  R  P  F  Q  E  G  S  *  T  R  S  A   : D  *  Y  R  A  I  *  E  D  P  E  V  H  K  I  W  Y  *  K  R  G  Y  S  R  V  W  R  G  K  I  G  F  Q  G  L  L  C  P  T  Y  C  L  L  K  C  P   : G  *  H  A  D  C  Q  R  *  D  I  W  T  S  A  V  P  L  E  I  Q  :  G  C  *  R  G  H  P  K  G  K  L  V  T  L  W  V  G  S  G  C  F  Y  P  E  Y  R  C  S  Q  H  N  I  S  S  P  *  S  R  D  S  V  G  *  L  L  *  H  L  *  C  C  H  S  V  W  W  L  *  D  E  W  T  W  K  R  E  G  S  L  Q  P  K  *  L  L  A  S  Q  S  Y  C  Y  P  S  E  E  S  S  M  A  V  V  F  P  P  A  F  W  Y  S  *  D  V  V  Q  H  G  N  L  V  F  *  R  S  L  V  Y  S  V  D  K  T  K  T  L  Y  C  V  C  V  I  V  C  Y  *  L  L  M  I  *  *  Q  Y  A  N  L  F  V  *  D  L  S  *  F  L  *  L  *  C  K  I  G  S  C  V  *  V  L  W  E  C  N  E  L  Y  I  D  V  M  L  *  F  Y  I  T  T  V  Y  </second_frame>
            <third_frame>   K  A  V  S  V  S  N  L  K  C  W  I  V  *  R  S  V  R  T  R  Y  F  S  F  N  I  S  L  G  S  N  E  A  I  R  R  *  F  Y  P  L  F  H  P  K  E  D  *  K  K  *  I  A  *  L  *  C  L  I  R  *  Y  N  P  H  V  E  N  E  E  N  H  I  F  F  F  Q  L  P  H  *  K  S  I  N  N  I  K  R  L  C  I  L  M  S  F  Q  L  L  Y  F  M  L  A  F  I  D  A  A  V  M  C  K  V  F  *  V  N  T  L  E  *  M  R  E  T  E  G  A  L  T  S  S  T  T  C  F  R  I  D  L  N  S  L  V  L  D  I  T  C  I  F  S  P  C  K  M  F  F  F  G  D  F  L  I  F  L  *  C  L  N  C  D  V  S  L  H  H  S  F  W  C  L  Q  I  A  F  T  G  S  T  E  T  G  K  A  V  V  G  A  A  A  K  S  N  L  K  P  V  T  L  E  L  G  G  K  S  P  F  I  I  C  E  D  A  D  V  D  K  A  V  E  L  A  H  S  A  V  F  F  N  Q  :  G  Q  C  C  C  A  G  S  R  T  F  V  H  E  R  V  Y  D  E  F  V  E  K  A  K  A  R  A  L  K  R  I  V  G  D  P  F  K  K  G  V  E  Q  G  P  Q  :  I  D  T  E  Q  F  E  K  I  L  K  Y  I  K  S  G  T  E  S  G  A  T  L  E  S  G  G  E  K  L  G  S  K  G  F  Y  V  Q  P  T  V  F  S  N  V  Q  :  D  N  M  L  I  A  R  D  E  I  F  G  P  V  Q  S  L  L  K  F  K :   D  V  E  E  V  I  R  R  A  N  S  S  H  Y  G  L  A  A  G  V  F  T  Q  N  I  D  A  A  N  T  I  S  R  A  L  R  V  G  T  V  W  V  N  C  F  N  I  F  D  A  A  I  P  F  G  G  Y  K  M  S  G  H  G  R  E  K  G  V  Y  S  L  S  N  Y  L  Q  V  K  A  I  V  T  P  L  K  N  P  A  W  L  *  F  S  P  L  L  S  G  T  P  E  M  S  C  N  T  A  I  L  S  F  R  G  H  L  Y  T  V  *  I  R  P  K  R  C  I  V  C  V  L  L  F  V  T  N  F  L  *  F  D  N  N  M  Q  T  C  L  C  E  T  F  L  D  F  C  S  S  D  A  K  *  D  L  V  F  E  F  C  G  N  V  M  N  Y  I  *  M  *  C  Y  N  S  I  L  L  R  Y  I </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02HBa0236E02.1" strand="-"/>
                <serials PGL_serial="21" AGS_serial="8" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="119134" stop="118913"/>
                    <exon start="118833" stop="118696"/>
                    <exon start="118415" stop="118278"/>
                    <exon start="118168" stop="118107"/>
                    <exon start="118027" stop="117754"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>831</number_coding_nucleotides>
                  <number_encoded_amino_acids>277</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>CLNCDVSLHHSFWCLQIAFTGSTETGKAVVGAAAKSNLKPVTLELGGKSPFIICEDADVDKAVELAHSAVFFNQGQCCCAGSRTFVHERVYDEFVEKAKARALKRIVGDPFKKGVEQGPQIDTEQFEKILKYIKSGTESGATLESGGEKLGSKGFYVQPTVFSNVQDNMLIARDEIFGPVQSLLKFKDVEEVIRRANSSHYGLAAGVFTQNIDAANTISRALRVGTVWVNCFNIFDAAIPFGGYKMSGHGREKGVYSLSNYLQVKAIVTPLKNPAWL*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="9">
          <exon_coordinates>
            <exon e_start="118900" e_stop="118696"/>
            <exon e_start="118415" e_stop="118278"/>
            <exon e_start="118168" e_stop="117610"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.997" acc_prob="0.996" e_score="0.961"/>
          <exon-intron don_prob="0.961" acc_prob="0.997" e_score="1.000"/>
          <exon-only e_score="0.988"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.961">
            <gDNA_exon_boundary e_start="118900" e_stop="118696" e_length="205"/>
          </exon>
          <intron i_serial="1" don_prob="0.997" acc_prob="0.996">
            <gDNA_intron_boundary i_start="118695" i_stop="118416" i_length="280"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="118415" e_stop="118278" e_length="138"/>
          </exon>
          <intron i_serial="2" don_prob="0.961" acc_prob="0.997">
            <gDNA_intron_boundary i_start="118277" i_stop="118169" i_length="109"/>
          </intron>
          <exon e_serial="3" e_score="0.988">
            <gDNA_exon_boundary e_start="118168" e_stop="117610" e_length="559"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="118900" stop="118696"/>
              <exon start="118415" stop="118278"/>
              <exon start="118168" stop="117737"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E434262" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="118701" stop="118696"/>
              <exon start="118415" stop="118278"/>
              <exon start="118168" stop="118132"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E264242" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="118026" stop="117610"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E256282" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="21" AGS_serial="9" gDNA_strand="-"/>
          <translation>
            <gDNA_template>TCCACTCTTGGAAAATTGCAACCTCTGATGCTTGCTCCAGAATGGAATAAATTTCAAGTATCTGCAGGGACAATGCTGCTGTGCTGGATCTCGGACATTCGTACATGAAAGAGTATATGATGAATTTGTGGAGAAAGCCAAAGCTCGTGCTTTAAAACGCATTGTTGGAGACCCTTTCAAGAAGGGAGTTGAACAAGGTCCGCAG : ATTGATACAGAGCAATTTGAGAAGATCCTGAAGTACATAAAATCTGGTACTGAAAGCGGGGCTACTCTCGAGTCTGGAGGGGAAAAATTGGGTTCCAAGGGCTTCTATGTCCAACCTACTGTCTTCTCAAATGTCCAG : GATAACATGCTGATTGCCAGAGATGAGATATTTGGACCAGTGCAGTCCCTCTTGAAATTCAAGTGAGATTACATTTCATTTGTATTGTATCTGTGCTTGTATTTTGTTTATTAACACTGAACCTGACCTTGAAACAAACAGGGATGTTGAAGAGGTCATCCGAAGGGCAAACTCGTCACATTATGGGTTGGCAGCGGGTGTTTTTACCCAGAATATAGATGCAGCCAACACAATATCTCGAGCCCTTAGAGTAGGGACAGTGTGGGTTAACTGCTTTAACATCTTTGATGCTGCCATTCCGTTTGGTGGTTATAAGATGAGTGGACATGGAAGAGAGAAGGGAGTCTACAGCCTAAGTAACTACTTGCAAGTCAAAGCTATTGTTACCCCTCTGAAGAATCCAGCATGGCTGTAGTTTTCCCCCCTGCTTTCTGGTACTCCTGAGATGTCGTGCAACACGGCAATCTTGTCTTTTAGAGGTCACTTGTATACAGTGTAGATAAGACCAAAACGCTGTATTGTGTGTGTGTTATTGTTTGTTACTAACTTCTTATGATTT</gDNA_template>
            <first_frame> S  T  L  G  K  L  Q  P  L  M  L  A  P  E  W  N  K  F  Q  V  S  A  G  T  M  L  L  C  W  I  S  D  I  R  T  *  K  S  I  *  *  I  C  G  E  S  Q  S  S  C  F  K  T  H  C  W  R  P  F  Q  E  G  S  *  T  R  S  A   : D  *  Y  R  A  I  *  E  D  P  E  V  H  K  I  W  Y  *  K  R  G  Y  S  R  V  W  R  G  K  I  G  F  Q  G  L  L  C  P  T  Y  C  L  L  K  C  P   : G  *  H  A  D  C  Q  R  *  D  I  W  T  S  A  V  P  L  E  I  Q  V  R  L  H  F  I  C  I  V  S  V  L  V  F  C  L  L  T  L  N  L  T  L  K  Q  T  G  M  L  K  R  S  S  E  G  Q  T  R  H  I  M  G  W  Q  R  V  F  L  P  R  I  *  M  Q  P  T  Q  Y  L  E  P  L  E  *  G  Q  C  G  L  T  A  L  T  S  L  M  L  P  F  R  L  V  V  I  R  *  V  D  M  E  E  R  R  E  S  T  A  *  V  T  T  C  K  S  K  L  L  L  P  L  *  R  I  Q  H  G  C  S  F  P  P  C  F  L  V  L  L  R  C  R  A  T  R  Q  S  C  L  L  E  V  T  C  I  Q  C  R  *  D  Q  N  A  V  L  C  V  C  Y  C  L  L  L  T  S  Y  D   </first_frame>
            <second_frame>  P  L  L  E  N  C  N  L  *  C  L  L  Q  N  G  I  N  F  K  Y  L  Q  G  Q  C  C  C  A  G  S  R  T  F  V  H  E  R  V  Y  D  E  F  V  E  K  A  K  A  R  A  L  K  R  I  V  G  D  P  F  K  K  G  V  E  Q  G  P  Q  :  I  D  T  E  Q  F  E  K  I  L  K  Y  I  K  S  G  T  E  S  G  A  T  L  E  S  G  G  E  K  L  G  S  K  G  F  Y  V  Q  P  T  V  F  S  N  V  Q  :  D  N  M  L  I  A  R  D  E  I  F  G  P  V  Q  S  L  L  K  F  K  *  D  Y  I  S  F  V  L  Y  L  C  L  Y  F  V  Y  *  H  *  T  *  P  *  N  K  Q  G  C  *  R  G  H  P  K  G  K  L  V  T  L  W  V  G  S  G  C  F  Y  P  E  Y  R  C  S  Q  H  N  I  S  S  P  *  S  R  D  S  V  G  *  L  L  *  H  L  *  C  C  H  S  V  W  W  L  *  D  E  W  T  W  K  R  E  G  S  L  Q  P  K  *  L  L  A  S  Q  S  Y  C  Y  P  S  E  E  S  S  M  A  V  V  F  P  P  A  F  W  Y  S  *  D  V  V  Q  H  G  N  L  V  F  *  R  S  L  V  Y  S  V  D  K  T  K  T  L  Y  C  V  C  V  I  V  C  Y  *  L  L  M  I  </second_frame>
            <third_frame>   H  S  W  K  I  A  T  S  D  A  C  S  R  M  E  *  I  S  S  I  C  R  D  N  A  A  V  L  D  L  G  H  S  Y  M  K  E  Y  M  M  N  L  W  R  K  P  K  L  V  L  *  N  A  L  L  E  T  L  S  R  R  E  L  N  K  V  R  R :   L  I  Q  S  N  L  R  R  S  *  S  T  *  N  L  V  L  K  A  G  L  L  S  S  L  E  G  K  N  W  V  P  R  A  S  M  S  N  L  L  S  S  Q  M  S  R :   I  T  C  *  L  P  E  M  R  Y  L  D  Q  C  S  P  S  *  N  S  S  E  I  T  F  H  L  Y  C  I  C  A  C  I  L  F  I  N  T  E  P  D  L  E  T  N  R  D  V  E  E  V  I  R  R  A  N  S  S  H  Y  G  L  A  A  G  V  F  T  Q  N  I  D  A  A  N  T  I  S  R  A  L  R  V  G  T  V  W  V  N  C  F  N  I  F  D  A  A  I  P  F  G  G  Y  K  M  S  G  H  G  R  E  K  G  V  Y  S  L  S  N  Y  L  Q  V  K  A  I  V  T  P  L  K  N  P  A  W  L  *  F  S  P  L  L  S  G  T  P  E  M  S  C  N  T  A  I  L  S  F  R  G  H  L  Y  T  V  *  I  R  P  K  R  C  I  V  C  V  L  L  F  V  T  N  F  L  *  F </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02HBa0236E02.1" strand="-"/>
                <serials PGL_serial="21" AGS_serial="9" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="118872" stop="118696"/>
                    <exon start="118415" stop="118278"/>
                    <exon start="118168" stop="118103"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>378</number_coding_nucleotides>
                  <number_encoded_amino_acids>126</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>CLLQNGINFKYLQGQCCCAGSRTFVHERVYDEFVEKAKARALKRIVGDPFKKGVEQGPQIDTEQFEKILKYIKSGTESGATLESGGEKLGSKGFYVQPTVFSNVQDNMLIARDEIFGPVQSLLKFK*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C02HBa0236E02.1" strand="-"/>
                <serials PGL_serial="21" AGS_serial="9" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="118113" stop="117754"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>357</number_coding_nucleotides>
                  <number_encoded_amino_acids>119</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>NSSEITFHLYCICACILFINTEPDLETNRDVEEVIRRANSSHYGLAAGVFTQNIDAANTISRALRVGTVWVNCFNIFDAAIPFGGYKMSGHGREKGVYSLSNYLQVKAIVTPLKNPAWL*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="10">
          <exon_coordinates>
            <exon e_start="122559" e_stop="121833"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.999"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.999">
            <gDNA_exon_boundary e_start="122559" e_stop="121833" e_length="727"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="122559" stop="121833"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E333396" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="21" AGS_serial="10" gDNA_strand="-"/>
          <translation>
            <gDNA_template>AACTTTTTTCCATGAGTTGATTTCCAAGAAAATGGAAATAACTTTGCCCGCATTGGATCTAACTAACAACTTATTGTTCTACCCAAGTCCAAGAAATCAAAAACAAACCCATATAATGGTAGCGTGGCGGCGGCGCGTCTTCTTCAATGGTTTCCAGGAGAAGGGGAAATAACTTTACCCACATCCGACCCAACTAACAAGTAAACCATCTTTCCCGTTATAGTTCTACCCAGGTCCAAGAAGGCAAATACAAACCCCTCTGGGCGTGGCAGCGGCGCATCTTCTTCCATGTCTTCCAAGAAAAGGGAAAATAACTTTGCCTTTTCCCATCTTCTACAGTTCCCTTAATTTTGCATTTTTTTAGAATCTAACTCAACAGTCCCTTTATGGACTTCATCACTTCTAACCAAACACAAATCCAACTAAGAAGAGATAAAACTCAATAAAATGAATAGCGTCCCAGAGGAAAATCTCAACACCTGAGTAGACATAAAAAAGAATCAACTTAGCAGTTAAATAAAATATCACATCATCAACAGCAGAAGTTGCCGCCTGAATCGCCACGAACCCAACCACAAAAGCAGAGACAAATTTCCCTTGCTGAAAGAATCAGCCCAAATCCACTACATTCTTGTACTGCAATTCCAATTACACTTGCCTCGAAATTGCCGCAAATACAGTAACTTGGTGACTTTTGAGGAAGATGGAAAAATTGATTCTTTTCTAT</gDNA_template>
            <first_frame> N  F  F  P  *  V  D  F  Q  E  N  G  N  N  F  A  R  I  G  S  N  *  Q  L  I  V  L  P  K  S  K  K  S  K  T  N  P  Y  N  G  S  V  A  A  A  R  L  L  Q  W  F  P  G  E  G  E  I  T  L  P  T  S  D  P  T  N  K  *  T  I  F  P  V  I  V  L  P  R  S  K  K  A  N  T  N  P  S  G  R  G  S  G  A  S  S  S  M  S  S  K  K  R  E  N  N  F  A  F  S  H  L  L  Q  F  P  *  F  C  I  F  L  E  S  N  S  T  V  P  L  W  T  S  S  L  L  T  K  H  K  S  N  *  E  E  I  K  L  N  K  M  N  S  V  P  E  E  N  L  N  T  *  V  D  I  K  K  N  Q  L  S  S  *  I  K  Y  H  I  I  N  S  R  S  C  R  L  N  R  H  E  P  N  H  K  S  R  D  K  F  P  L  L  K  E  S  A  Q  I  H  Y  I  L  V  L  Q  F  Q  L  H  L  P  R  N  C  R  K  Y  S  N  L  V  T  F  E  E  D  G  K  I  D  S  F  L  </first_frame>
            <second_frame>  T  F  F  H  E  L  I  S  K  K  M  E  I  T  L  P  A  L  D  L  T  N  N  L  L  F  Y  P  S  P  R  N  Q  K  Q  T  H  I  M  V  A  W  R  R  R  V  F  F  N  G  F  Q  E  K  G  K  *  L  Y  P  H  P  T  Q  L  T  S  K  P  S  F  P  L  *  F  Y  P  G  P  R  R  Q  I  Q  T  P  L  G  V  A  A  A  H  L  L  P  C  L  P  R  K  G  K  I  T  L  P  F  P  I  F  Y  S  S  L  N  F  A  F  F  *  N  L  T  Q  Q  S  L  Y  G  L  H  H  F  *  P  N  T  N  P  T  K  K  R  *  N  S  I  K  *  I  A  S  Q  R  K  I  S  T  P  E  *  T  *  K  R  I  N  L  A  V  K  *  N  I  T  S  S  T  A  E  V  A  A  *  I  A  T  N  P  T  T  K  A  E  T  N  F  P  C  *  K  N  Q  P  K  S  T  T  F  L  Y  C  N  S  N  Y  T  C  L  E  I  A  A  N  T  V  T  W  *  L  L  R  K  M  E  K  L  I  L  F  Y </second_frame>
            <third_frame>   L  F  S  M  S  *  F  P  R  K  W  K  *  L  C  P  H  W  I  *  L  T  T  Y  C  S  T  Q  V  Q  E  I  K  N  K  P  I  *  W  *  R  G  G  G  A  S  S  S  M  V  S  R  R  R  G  N  N  F  T  H  I  R  P  N  *  Q  V  N  H  L  S  R  Y  S  S  T  Q  V  Q  E  G  K  Y  K  P  L  W  A  W  Q  R  R  I  F  F  H  V  F  Q  E  K  G  K  *  L  C  L  F  P  S  S  T  V  P  L  I  L  H  F  F  R  I  *  L  N  S  P  F  M  D  F  I  T  S  N  Q  T  Q  I  Q  L  R  R  D  K  T  Q  *  N  E  *  R  P  R  G  K  S  Q  H  L  S  R  H  K  K  E  S  T  *  Q  L  N  K  I  S  H  H  Q  Q  Q  K  L  P  P  E  S  P  R  T  Q  P  Q  K  Q  R  Q  I  S  L  A  E  R  I  S  P  N  P  L  H  S  C  T  A  I  P  I  T  L  A  S  K  L  P  Q  I  Q  *  L  G  D  F  *  G  R  W  K  N  *  F  F  S   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02HBa0236E02.1" strand="-"/>
                <serials PGL_serial="21" AGS_serial="10" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="122043" stop="121834"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>210</number_coding_nucleotides>
                  <number_encoded_amino_acids>70</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>IKYHIINSRSCRLNRHEPNHKSRDKFPLLKESAQIHYILVLQFQLHLPRNCRKYSNLVTFEEDGKIDSFL</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="22" PGL_strand="+" PGL_start="120066" PGL_stop="120398"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="120066" e_stop="120398"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.979"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.979">
            <gDNA_exon_boundary e_start="120066" e_stop="120398" e_length="333"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="120066" stop="120398"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E277810" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="22" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>AGAGAGTGGTGTTTGTTCTGCTGGTTTTAGTACGACAGTGTTACCACAAGCAAGTGCAGGGCCAACTTTCCAGGCGAACATTAATAACGGAAAATTCCAGGGTATTATCTGTCCTGCAACACCAATTGGCTCATGCAGGGTCTGAACATGGTGCAAACTGTCAGCAGGAGCTGTAAGACCATGAATTTTATCAGCCCAACCTGAATAAGAAATGTAAGCAGAAATACTTAGAAAAGCATTTAGGGTGATTCAGCAAACATTAGAACGTCAATTGATATACAATAAGTGGTTATTAAACTGTCAAAAGGAAACATAACGCCATTTTTCTTATTT</gDNA_template>
            <first_frame> R  E  W  C  L  F  C  W  F  *  Y  D  S  V  T  T  S  K  C  R  A  N  F  P  G  E  H  *  *  R  K  I  P  G  Y  Y  L  S  C  N  T  N  W  L  M  Q  G  L  N  M  V  Q  T  V  S  R  S  C  K  T  M  N  F  I  S  P  T  *  I  R  N  V  S  R  N  T  *  K  S  I  *  G  D  S  A  N  I  R  T  S  I  D  I  Q  *  V  V  I  K  L  S  K  G  N  I  T  P  F  F  L  F </first_frame>
            <second_frame>  E  S  G  V  C  S  A  G  F  S  T  T  V  L  P  Q  A  S  A  G  P  T  F  Q  A  N  I  N  N  G  K  F  Q  G  I  I  C  P  A  T  P  I  G  S  C  R  V  *  T  W  C  K  L  S  A  G  A  V  R  P  *  I  L  S  A  Q  P  E  *  E  M  *  A  E  I  L  R  K  A  F  R  V  I  Q  Q  T  L  E  R  Q  L  I  Y  N  K  W  L  L  N  C  Q  K  E  T  *  R  H  F  S  Y   </second_frame>
            <third_frame>   R  V  V  F  V  L  L  V  L  V  R  Q  C  Y  H  K  Q  V  Q  G  Q  L  S  R  R  T  L  I  T  E  N  S  R  V  L  S  V  L  Q  H  Q  L  A  H  A  G  S  E  H  G  A  N  C  Q  Q  E  L  *  D  H  E  F  Y  Q  P  N  L  N  K  K  C  K  Q  K  Y  L  E  K  H  L  G  *  F  S  K  H  *  N  V  N  *  Y  T  I  S  G  Y  *  T  V  K  R  K  H  N  A  I  F  L  I  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <none gDNA_id="C02HBa0236E02.1"/>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="23" PGL_strand="+" PGL_start="126471" PGL_stop="128356"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="126471" e_stop="126792"/>
            <exon e_start="127249" e_stop="127494"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.967" acc_prob="0.985" e_score="0.944"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.944">
            <gDNA_exon_boundary e_start="126471" e_stop="126792" e_length="322"/>
          </exon>
          <intron i_serial="1" don_prob="0.967" acc_prob="0.985">
            <gDNA_intron_boundary i_start="126793" i_stop="127248" i_length="456"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="127249" e_stop="127494" e_length="246"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="126471" stop="126792"/>
              <exon start="127249" stop="127494"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E253442" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="23" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>ACCTATCATTTTTTTGAAAAATTAACTTTAATGAAAGTGAAATCCAAACAGGTGAGAGATATAAAAAAAAAAAAAGGAAAAGAGAGAGTACTAAATTAAGATGCAGTCCATTCTTTTGCACATAAACAGTAGTAAAGACGTAGTATAAATACTTGAAGTGCGAAGCTGAGAAATGATCCGTCGTGTATGAGTATTCATTGCTGGAGACGAGAAAATTAAATAGAGATGGAGAAGAAGAGATAAGAATCGGAGCAACGTCAAGAATTCAGATACAGAGTAATTTTTGGACAGAGACAGATTTGCTGCTGCTAAAAATGCAGAG : AAAAATCAGGCTCATCTGGCTTAAACAGCTTGGGCATTTTTAAGCTAGAAGAAGAATCAGCCATCTTCTGTTCTATTCCTCTTCTCGTATTAGTAGCAAATCGTTTGGCCAAAATTGTAGCTCCAAGTTGTTGGGAACCACGAGAACCACTGGCTACTAACGGTTGCTCAGGACCAGCGTCATCAAAACTTTGCTCATTGTAGTTACCCTCATCATTAGGATCTTGATTATAATAATAGCTCTCTT</gDNA_template>
            <first_frame> T  Y  H  F  F  E  K  L  T  L  M  K  V  K  S  K  Q  V  R  D  I  K  K  K  K  G  K  E  R  V  L  N  *  D  A  V  H  S  F  A  H  K  Q  *  *  R  R  S  I  N  T  *  S  A  K  L  R  N  D  P  S  C  M  S  I  H  C  W  R  R  E  N  *  I  E  M  E  K  K  R  *  E  S  E  Q  R  Q  E  F  R  Y  R  V  I  F  G  Q  R  Q  I  C  C  C  *  K  C  R   : E  K  S  G  S  S  G  L  N  S  L  G  I  F  K  L  E  E  E  S  A  I  F  C  S  I  P  L  L  V  L  V  A  N  R  L  A  K  I  V  A  P  S  C  W  E  P  R  E  P  L  A  T  N  G  C  S  G  P  A  S  S  K  L  C  S  L  *  L  P  S  S  L  G  S  *  L  *  *  *  L  S  </first_frame>
            <second_frame>  P  I  I  F  L  K  N  *  L  *  *  K  *  N  P  N  R  *  E  I  *  K  K  K  K  E  K  R  E  Y  *  I  K  M  Q  S  I  L  L  H  I  N  S  S  K  D  V  V  *  I  L  E  V  R  S  *  E  M  I  R  R  V  *  V  F  I  A  G  D  E  K  I  K  *  R  W  R  R  R  D  K  N  R  S  N  V  K  N  S  D  T  E  *  F  L  D  R  D  R  F  A  A  A  K  N  A  E  :  K  N  Q  A  H  L  A  *  T  A  W  A  F  L  S  *  K  K  N  Q  P  S  S  V  L  F  L  F  S  Y  *  *  Q  I  V  W  P  K  L  *  L  Q  V  V  G  N  H  E  N  H  W  L  L  T  V  A  Q  D  Q  R  H  Q  N  F  A  H  C  S  Y  P  H  H  *  D  L  D  Y  N  N  S  S  L </second_frame>
            <third_frame>   L  S  F  F  *  K  I  N  F  N  E  S  E  I  Q  T  G  E  R  Y  K  K  K  K  R  K  R  E  S  T  K  L  R  C  S  P  F  F  C  T  *  T  V  V  K  T  *  Y  K  Y  L  K  C  E  A  E  K  *  S  V  V  Y  E  Y  S  L  L  E  T  R  K  L  N  R  D  G  E  E  E  I  R  I  G  A  T  S  R  I  Q  I  Q  S  N  F  W  T  E  T  D  L  L  L  L  K  M  Q  R :   K  I  R  L  I  W  L  K  Q  L  G  H  F  *  A  R  R  R  I  S  H  L  L  F  Y  S  S  S  R  I  S  S  K  S  F  G  Q  N  C  S  S  K  L  L  G  T  T  R  T  T  G  Y  *  R  L  L  R  T  S  V  I  K  T  L  L  I  V  V  T  L  I  I  R  I  L  I  I  I  I  A  L   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02HBa0236E02.1" strand="+"/>
                <serials PGL_serial="23" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="126783" stop="126792"/>
                    <exon start="127249" stop="127451"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>210</number_coding_nucleotides>
                  <number_encoded_amino_acids>70</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>KCREKSGSSGLNSLGIFKLEEESAIFCSIPLLVLVANRLAKIVAPSCWEPREPLATNGCSGPASSKLCSL*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="2">
          <exon_coordinates>
            <exon e_start="127573" e_stop="128356"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.985"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.985">
            <gDNA_exon_boundary e_start="127573" e_stop="128356" e_length="784"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="127573" stop="128356"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E357653" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="23" AGS_serial="2" gDNA_strand="+"/>
          <translation>
            <gDNA_template>TCCACTGATGAGAATAGTACCTAAATGCATGCTGTAGCTTCATGCTGTGAAGACGTTTAAATTGAACTGCAAAAAATTTCAGGTCTTCAGCTCGAAGTGCAAATGCTTCAACTTCAGTAAGTGTTCTCACTGTTCGAGTTGAAGCTGGCAACTGCGTTGAGTTAGGCAGTAAGGCCCAAGTCAGCAATTCTTCACCACAAAAATCATTAGGTCCAAGGGTGATTGAATTGAAGAATCCAGATCTTCCCCCATTTGTCGTGGAGCTCTCTAGTTGTCCCCTGATGATAAAGAGCATCTCACTCACTGGATCATCTTCTAGAACAACATATGTGCCCATTATGCTCAGGGTCGACACTAGGCGTTCACATATTGCATCAAGCAACTGGTCATCCATTTGCTCAAAAAATGGAACCTGCGCAGTCAGGAGATTTTGGGGTCTCTAAAGCTTAGCAAACAAAAGTGGATGGGTTTAGGCATTTACAGAGTAAAAATACAACTCCAAACATGTGGCTGATGCAAATACAAAACGTAAGGTACATCACAAGACAAGTCAAAGCTTAAATTGATGACTGAAGAGATGGAACTATTTTATTTATTCATTCACTAATACTTATTAGTACTTATTTCTTTTGCTCAAATCTTTAACTACTGGCAAATATTTCTGCCTGCAGCTCTTTTCCTTAATGTTTGCCTCCTGAAAGTATTTCAATTCCAAGAGAAGTGAAATACTGCAAACACCACATATTACATCATCTGGCTATGCCATATATATATATATATCTAA</gDNA_template>
            <first_frame> S  T  D  E  N  S  T  *  M  H  A  V  A  S  C  C  E  D  V  *  I  E  L  Q  K  I  S  G  L  Q  L  E  V  Q  M  L  Q  L  Q  *  V  F  S  L  F  E  L  K  L  A  T  A  L  S  *  A  V  R  P  K  S  A  I  L  H  H  K  N  H  *  V  Q  G  *  L  N  *  R  I  Q  I  F  P  H  L  S  W  S  S  L  V  V  P  *  *  *  R  A  S  H  S  L  D  H  L  L  E  Q  H  M  C  P  L  C  S  G  S  T  L  G  V  H  I  L  H  Q  A  T  G  H  P  F  A  Q  K  M  E  P  A  Q  S  G  D  F  G  V  S  K  A  *  Q  T  K  V  D  G  F  R  H  L  Q  S  K  N  T  T  P  N  M  W  L  M  Q  I  Q  N  V  R  Y  I  T  R  Q  V  K  A  *  I  D  D  *  R  D  G  T  I  L  F  I  H  S  L  I  L  I  S  T  Y  F  F  C  S  N  L  *  L  L  A  N  I  S  A  C  S  S  F  P  *  C  L  P  P  E  S  I  S  I  P  R  E  V  K  Y  C  K  H  H  I  L  H  H  L  A  M  P  Y  I  Y  I  Y  L  </first_frame>
            <second_frame>  P  L  M  R  I  V  P  K  C  M  L  *  L  H  A  V  K  T  F  K  L  N  C  K  K  F  Q  V  F  S  S  K  C  K  C  F  N  F  S  K  C  S  H  C  S  S  *  S  W  Q  L  R  *  V  R  Q  *  G  P  S  Q  Q  F  F  T  T  K  I  I  R  S  K  G  D  *  I  E  E  S  R  S  S  P  I  C  R  G  A  L  *  L  S  P  D  D  K  E  H  L  T  H  W  I  I  F  *  N  N  I  C  A  H  Y  A  Q  G  R  H  *  A  F  T  Y  C  I  K  Q  L  V  I  H  L  L  K  K  W  N  L  R  S  Q  E  I  L  G  S  L  K  L  S  K  Q  K  W  M  G  L  G  I  Y  R  V  K  I  Q  L  Q  T  C  G  *  C  K  Y  K  T  *  G  T  S  Q  D  K  S  K  L  K  L  M  T  E  E  M  E  L  F  Y  L  F  I  H  *  Y  L  L  V  L  I  S  F  A  Q  I  F  N  Y  W  Q  I  F  L  P  A  A  L  F  L  N  V  C  L  L  K  V  F  Q  F  Q  E  K  *  N  T  A  N  T  T  Y  Y  I  I  W  L  C  H  I  Y  I  Y  I  * </second_frame>
            <third_frame>   H  *  *  E  *  Y  L  N  A  C  C  S  F  M  L  *  R  R  L  N  *  T  A  K  N  F  R  S  S  A  R  S  A  N  A  S  T  S  V  S  V  L  T  V  R  V  E  A  G  N  C  V  E  L  G  S  K  A  Q  V  S  N  S  S  P  Q  K  S  L  G  P  R  V  I  E  L  K  N  P  D  L  P  P  F  V  V  E  L  S  S  C  P  L  M  I  K  S  I  S  L  T  G  S  S  S  R  T  T  Y  V  P  I  M  L  R  V  D  T  R  R  S  H  I  A  S  S  N  W  S  S  I  C  S  K  N  G  T  C  A  V  R  R  F  W  G  L  *  S  L  A  N  K  S  G  W  V  *  A  F  T  E  *  K  Y  N  S  K  H  V  A  D  A  N  T  K  R  K  V  H  H  K  T  S  Q  S  L  N  *  *  L  K  R  W  N  Y  F  I  Y  S  F  T  N  T  Y  *  Y  L  F  L  L  L  K  S  L  T  T  G  K  Y  F  C  L  Q  L  F  S  L  M  F  A  S  *  K  Y  F  N  S  K  R  S  E  I  L  Q  T  P  H  I  T  S  S  G  Y  A  I  Y  I  Y  I  S   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02HBa0236E02.1" strand="+"/>
                <serials PGL_serial="23" AGS_serial="2" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="127638" stop="128015"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>375</number_coding_nucleotides>
                  <number_encoded_amino_acids>125</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>TAKNFRSSARSANASTSVSVLTVRVEAGNCVELGSKAQVSNSSPQKSLGPRVIELKNPDLPPFVVELSSCPLMIKSISLTGSSSRTTYVPIMLRVDTRRSHIASSNWSSICSKNGTCAVRRFWGL*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="3">
          <exon_coordinates>
            <exon e_start="126672" e_stop="126792"/>
            <exon e_start="127655" e_stop="128102"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.967" acc_prob="0.821" e_score="1.000"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="126672" e_stop="126792" e_length="121"/>
          </exon>
          <intron i_serial="1" don_prob="0.967" acc_prob="0.821">
            <gDNA_intron_boundary i_start="126793" i_stop="127654" i_length="862"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="127655" e_stop="128102" e_length="448"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="126672" stop="126792"/>
              <exon start="127655" stop="128102"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E308495" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="23" AGS_serial="3" gDNA_strand="+"/>
          <translation>
            <gDNA_template>TGGAGACGAGAAAATTAAATAGAGATGGAGAAGAAGAGATAAGAATCGGAGCAACGTCAAGAATTCAGATACAGAGTAATTTTTGGACAGAGACAGATTTGCTGCTGCTAAAAATGCAGAG : GTCTTCAGCTCGAAGTGCAAATGCTTCAACTTCAGTAAGTGTTCTCACTGTTCGAGTTGAAGCTGGCAACTGCGTTGAGTTAGGCAGTAAGGCCCAAGTCAGCAATTCTTCACCACAAAAATCATTAGGTCCAAGGGTGATTGAATTGAAGAATCCAGATCTTCCCCCATTTGTCGTGGAGCTCTCTAGTTGTCCCCTGATGATAAAGAGCATCTCACTCACTGGATCATCTTCTAGAACAACATATGTGCCCATTATGCTCAGGGTCGACACTAGGCGTTCACATATTGCATCAAGCAACTGGTCATCCATTTGCTCAAAAAATGGAACCTGCGCAGTCAGGAGATTTTGGGGTCTCTAAAGCTTAGCAAACAAAAGTGGATGGGTTTAGGCATTTACAGAGTAAAAATACAACTCCAAACATGTGGCTGATGCAAATACAAAACGT</gDNA_template>
            <first_frame> W  R  R  E  N  *  I  E  M  E  K  K  R  *  E  S  E  Q  R  Q  E  F  R  Y  R  V  I  F  G  Q  R  Q  I  C  C  C  *  K  C  R   : G  L  Q  L  E  V  Q  M  L  Q  L  Q  *  V  F  S  L  F  E  L  K  L  A  T  A  L  S  *  A  V  R  P  K  S  A  I  L  H  H  K  N  H  *  V  Q  G  *  L  N  *  R  I  Q  I  F  P  H  L  S  W  S  S  L  V  V  P  *  *  *  R  A  S  H  S  L  D  H  L  L  E  Q  H  M  C  P  L  C  S  G  S  T  L  G  V  H  I  L  H  Q  A  T  G  H  P  F  A  Q  K  M  E  P  A  Q  S  G  D  F  G  V  S  K  A  *  Q  T  K  V  D  G  F  R  H  L  Q  S  K  N  T  T  P  N  M  W  L  M  Q  I  Q  N   </first_frame>
            <second_frame>  G  D  E  K  I  K  *  R  W  R  R  R  D  K  N  R  S  N  V  K  N  S  D  T  E  *  F  L  D  R  D  R  F  A  A  A  K  N  A  E  :  V  F  S  S  K  C  K  C  F  N  F  S  K  C  S  H  C  S  S  *  S  W  Q  L  R  *  V  R  Q  *  G  P  S  Q  Q  F  F  T  T  K  I  I  R  S  K  G  D  *  I  E  E  S  R  S  S  P  I  C  R  G  A  L  *  L  S  P  D  D  K  E  H  L  T  H  W  I  I  F  *  N  N  I  C  A  H  Y  A  Q  G  R  H  *  A  F  T  Y  C  I  K  Q  L  V  I  H  L  L  K  K  W  N  L  R  S  Q  E  I  L  G  S  L  K  L  S  K  Q  K  W  M  G  L  G  I  Y  R  V  K  I  Q  L  Q  T  C  G  *  C  K  Y  K  T  </second_frame>
            <third_frame>   E  T  R  K  L  N  R  D  G  E  E  E  I  R  I  G  A  T  S  R  I  Q  I  Q  S  N  F  W  T  E  T  D  L  L  L  L  K  M  Q  R :   S  S  A  R  S  A  N  A  S  T  S  V  S  V  L  T  V  R  V  E  A  G  N  C  V  E  L  G  S  K  A  Q  V  S  N  S  S  P  Q  K  S  L  G  P  R  V  I  E  L  K  N  P  D  L  P  P  F  V  V  E  L  S  S  C  P  L  M  I  K  S  I  S  L  T  G  S  S  S  R  T  T  Y  V  P  I  M  L  R  V  D  T  R  R  S  H  I  A  S  S  N  W  S  S  I  C  S  K  N  G  T  C  A  V  R  R  F  W  G  L  *  S  L  A  N  K  S  G  W  V  *  A  F  T  E  *  K  Y  N  S  K  H  V  A  D  A  N  T  K  R </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02HBa0236E02.1" strand="+"/>
                <serials PGL_serial="23" AGS_serial="3" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="126674" stop="126792"/>
                    <exon start="127655" stop="128015"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>477</number_coding_nucleotides>
                  <number_encoded_amino_acids>159</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>ETRKLNRDGEEEIRIGATSRIQIQSNFWTETDLLLLKMQRSSARSANASTSVSVLTVRVEAGNCVELGSKAQVSNSSPQKSLGPRVIELKNPDLPPFVVELSSCPLMIKSISLTGSSSRTTYVPIMLRVDTRRSHIASSNWSSICSKNGTCAVRRFWGL*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="24" PGL_strand="-" PGL_start="128195" PGL_stop="126917"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="128195" e_stop="127037"/>
            <exon e_start="126922" e_stop="126917"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.000" acc_prob="0.898" e_score="0.983"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.983">
            <gDNA_exon_boundary e_start="128195" e_stop="127037" e_length="1159"/>
          </exon>
          <intron i_serial="1" don_prob="0.000" acc_prob="0.898">
            <gDNA_intron_boundary i_start="127036" i_stop="126923" i_length="114"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="126922" e_stop="126917" e_length="6"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="128195" stop="127660"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E318767" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="127800" stop="127077"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E374138" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="127496" stop="127037"/>
              <exon start="126922" stop="126917"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E279612" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="24" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>TAAGTACTAATAAGTATTAGTGAATGAATAAATAAAATAGTTCCATCTCTTCAGTCATCAATTTAAGCTTTGACTTGTCTTGTGATGTACCTTACGTTTTGTATTTGCATCAGCCACATGTTTGGAGTTGTATTTTTACTCTGTAAATGCCTAAACCCATCCACTTTTGTTTGCTAAGCTTTAGAGACCCCAAAATCTCCTGACTGCGCAGGTTCCATTTTTTGAGCAAATGGATGACCAGTTGCTTGATGCAATATGTGAACGCCTAGTGTCGACCCTGAGCATAATGGGCACATATGTTGTTCTAGAAGATGATCCAGTGAGTGAGATGCTCTTTATCATCAGGGGACAACTAGAGAGCTCCACGACAAATGGGGGAAGATCTGGATTCTTCAATTCAATCACCCTTGGACCTAATGATTTTTGTGGTGAAGAATTGCTGACTTGGGCCTTACTGCCTAACTCAACGCAGTTGCCAGCTTCAACTCGAACAGTGAGAACACTTACTGAAGTTGAAGCATTTGCACTTCGAGCTGAAGACCTGAAATTTTTTGCAGTTCAATTTAAACGTCTTCACAGCATGAAGCTACAGCATGCATTTAGGTACTATTCTCATCAGTGGAGAACATGGGGTGCTTGTTTTATACAGGCTGCATGGAGAAGGTATAAGAAGAAAAAGATGGAATACGAGTTGGCTCTACAAGAGAGCTATTATTATAATCAAGATCCTAATGATGAGGGTAACTACAATGAGCAAAGTTTTGATGACGCTGGTCCTGAGCAACCGTTAGTAGCCAGTGGTTCTCGTGGTTCCCAACAACTTGGAGCTACAATTTTGGCCAAACGATTTGCTACTAATACGAGAAGAGGAATAGAACAGAAGATGGCTGATTCTTCTTCTAGCTTAAAAATGCCCAAGCTGTTTAAGCCAGATGAGCCTGATTTTTCTGCAGAATGAAGGCCACATCATATGTAATTAGTTAGAACACCTTGCATTACTGAAAGGTACTGGTGACTGGTGAGTAATGACAAAGCTAGTACCCTTTTTTTTAAAACTTTTTTGTAAATTTCAGGAACTATAGGCCTTTTTGATTACAACATTATTCCCTTTTCAATCATGTGAAATACAACCTTCTTTTCTAGTTGATTGTGCCTAAAA : AAAAAA</gDNA_template>
            <first_frame> *  V  L  I  S  I  S  E  *  I  N  K  I  V  P  S  L  Q  S  S  I  *  A  L  T  C  L  V  M  Y  L  T  F  C  I  C  I  S  H  M  F  G  V  V  F  L  L  C  K  C  L  N  P  S  T  F  V  C  *  A  L  E  T  P  K  S  P  D  C  A  G  S  I  F  *  A  N  G  *  P  V  A  *  C  N  M  *  T  P  S  V  D  P  E  H  N  G  H  I  C  C  S  R  R  *  S  S  E  *  D  A  L  Y  H  Q  G  T  T  R  E  L  H  D  K  W  G  K  I  W  I  L  Q  F  N  H  P  W  T  *  *  F  L  W  *  R  I  A  D  L  G  L  T  A  *  L  N  A  V  A  S  F  N  S  N  S  E  N  T  Y  *  S  *  S  I  C  T  S  S  *  R  P  E  I  F  C  S  S  I  *  T  S  S  Q  H  E  A  T  A  C  I  *  V  L  F  S  S  V  E  N  M  G  C  L  F  Y  T  G  C  M  E  K  V  *  E  E  K  D  G  I  R  V  G  S  T  R  E  L  L  L  *  S  R  S  *  *  *  G  *  L  Q  *  A  K  F  *  *  R  W  S  *  A  T  V  S  S  Q  W  F  S  W  F  P  T  T  W  S  Y  N  F  G  Q  T  I  C  Y  *  Y  E  K  R  N  R  T  E  D  G  *  F  F  F  *  L  K  N  A  Q  A  V  *  A  R  *  A  *  F  F  C  R  M  K  A  T  S  Y  V  I  S  *  N  T  L  H  Y  *  K  V  L  V  T  G  E  *  *  Q  S  *  Y  P  F  F  *  N  F  F  V  N  F  R  N  Y  R  P  F  *  L  Q  H  Y  S  L  F  N  H  V  K  Y  N  L  L  F  *  L  I  V  P  K   : K  K  </first_frame>
            <second_frame>  K  Y  *  *  V  L  V  N  E  *  I  K  *  F  H  L  F  S  H  Q  F  K  L  *  L  V  L  *  C  T  L  R  F  V  F  A  S  A  T  C  L  E  L  Y  F  Y  S  V  N  A  *  T  H  P  L  L  F  A  K  L  *  R  P  Q  N  L  L  T  A  Q  V  P  F  F  E  Q  M  D  D  Q  L  L  D  A  I  C  E  R  L  V  S  T  L  S  I  M  G  T  Y  V  V  L  E  D  D  P  V  S  E  M  L  F  I  I  R  G  Q  L  E  S  S  T  T  N  G  G  R  S  G  F  F  N  S  I  T  L  G  P  N  D  F  C  G  E  E  L  L  T  W  A  L  L  P  N  S  T  Q  L  P  A  S  T  R  T  V  R  T  L  T  E  V  E  A  F  A  L  R  A  E  D  L  K  F  F  A  V  Q  F  K  R  L  H  S  M  K  L  Q  H  A  F  R  Y  Y  S  H  Q  W  R  T  W  G  A  C  F  I  Q  A  A  W  R  R  Y  K  K  K  K  M  E  Y  E  L  A  L  Q  E  S  Y  Y  Y  N  Q  D  P  N  D  E  G  N  Y  N  E  Q  S  F  D  D  A  G  P  E  Q  P  L  V  A  S  G  S  R  G  S  Q  Q  L  G  A  T  I  L  A  K  R  F  A  T  N  T  R  R  G  I  E  Q  K  M  A  D  S  S  S  S  L  K  M  P  K  L  F  K  P  D  E  P  D  F  S  A  E  *  R  P  H  H  M  *  L  V  R  T  P  C  I  T  E  R  Y  W  *  L  V  S  N  D  K  A  S  T  L  F  F  K  T  F  L  *  I  S  G  T  I  G  L  F  D  Y  N  I  I  P  F  S  I  M  *  N  T  T  F  F  S  S  *  L  C  L  K  :  K  K </second_frame>
            <third_frame>   S  T  N  K  Y  *  *  M  N  K  *  N  S  S  I  S  S  V  I  N  L  S  F  D  L  S  C  D  V  P  Y  V  L  Y  L  H  Q  P  H  V  W  S  C  I  F  T  L  *  M  P  K  P  I  H  F  C  L  L  S  F  R  D  P  K  I  S  *  L  R  R  F  H  F  L  S  K  W  M  T  S  C  L  M  Q  Y  V  N  A  *  C  R  P  *  A  *  W  A  H  M  L  F  *  K  M  I  Q  *  V  R  C  S  L  S  S  G  D  N  *  R  A  P  R  Q  M  G  E  D  L  D  S  S  I  Q  S  P  L  D  L  M  I  F  V  V  K  N  C  *  L  G  P  Y  C  L  T  Q  R  S  C  Q  L  Q  L  E  Q  *  E  H  L  L  K  L  K  H  L  H  F  E  L  K  T  *  N  F  L  Q  F  N  L  N  V  F  T  A  *  S  Y  S  M  H  L  G  T  I  L  I  S  G  E  H  G  V  L  V  L  Y  R  L  H  G  E  G  I  R  R  K  R  W  N  T  S  W  L  Y  K  R  A  I  I  I  I  K  I  L  M  M  R  V  T  T  M  S  K  V  L  M  T  L  V  L  S  N  R  *  *  P  V  V  L  V  V  P  N  N  L  E  L  Q  F  W  P  N  D  L  L  L  I  R  E  E  E  *  N  R  R  W  L  I  L  L  L  A  *  K  C  P  S  C  L  S  Q  M  S  L  I  F  L  Q  N  E  G  H  I  I  C  N  *  L  E  H  L  A  L  L  K  G  T  G  D  W  *  V  M  T  K  L  V  P  F  F  L  K  L  F  C  K  F  Q  E  L  *  A  F  L  I  T  T  L  F  P  F  Q  S  C  E  I  Q  P  S  F  L  V  D  C  A  *  K :   K   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02HBa0236E02.1" strand="-"/>
                <serials PGL_serial="24" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="128011" stop="127238"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>771</number_coding_nucleotides>
                  <number_encoded_amino_acids>257</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>RPQNLLTAQVPFFEQMDDQLLDAICERLVSTLSIMGTYVVLEDDPVSEMLFIIRGQLESSTTNGGRSGFFNSITLGPNDFCGEELLTWALLPNSTQLPASTRTVRTLTEVEAFALRAEDLKFFAVQFKRLHSMKLQHAFRYYSHQWRTWGACFIQAAWRRYKKKKMEYELALQESYYYNQDPNDEGNYNEQSFDDAGPEQPLVASGSRGSQQLGATILAKRFATNTRRGIEQKMADSSSSLKMPKLFKPDEPDFSAE*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="25" PGL_strand="-" PGL_start="131776" PGL_stop="130984"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="131776" e_stop="131153"/>
            <exon e_start="131080" e_stop="130984"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="1.000" acc_prob="0.996" e_score="1.000"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="131776" e_stop="131153" e_length="624"/>
          </exon>
          <intron i_serial="1" don_prob="1.000" acc_prob="0.996">
            <gDNA_intron_boundary i_start="131152" i_stop="131081" i_length="72"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="131080" e_stop="130984" e_length="97"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="131776" stop="131364"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E294277" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="131713" stop="131153"/>
              <exon start="131080" stop="130984"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E374139" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="131713" stop="131153"/>
              <exon start="131080" stop="130988"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E363008" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="131700" stop="131153"/>
              <exon start="131080" stop="131006"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E334656" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="131684" stop="131276"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E330736" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="131678" stop="131185"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E363811" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="131665" stop="131153"/>
              <exon start="131080" stop="130989"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E330304" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="25" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>TGATGAAAAAAGGAGCTTCAATGGAACACTCTTAATTCATTCTTCCTTCTTTTCTAGCGCTAATTTTCACTCACTGTTTCATTCATAATACAAAAAAATTATTGGAATCTGTTGTGTTTTCCAGAAGAGAGACAATCTTCCGGAATCCGATTTTGATATCGGACTCCGCCATGGAAGATGACTAGAATATTTGCAAAGCCGGCGTCTCACCTCCGTCATTTACAGCAATCTTTGAAGAACAAATCATTTTCGAACGATGTGCCATGGTGGCGCCAAATTCTCGATCCAAACAGCGATATCGTCAATCGCTGGAACTATGTCTTCCTCCTTACCTGTCTCATCTCTCTTTTCATCGATCCACTCTACTTCTACGTACCTTTCGTCAGCGATAGAGCTTGTATGTCCACTGATGACGAAGCCGCCCGTGAAATTACCATCTATCGTTCTCTCACCGACATCTTTTACTTCCTTCACATTGCCATGAAGTTCCGCACAGCTTTTGTTGCTCCTAGCTCTAGGGTTTTCGGCCGGGGTGAGCTTGTTATGGATCCCCGTGAAATTGCTATACGATATCTCAAAACTGATTTCATCGTTGATTTTACAGCTGCTCTTCCCCTGCCTCAA : ATTGTTATTCGCTATGTAATCCCAGCAGCCAAAAGAAATGGTTCGGGTCATTCCAAAAGTACACTTGCACTTATCGTTCTCATACAATATGTGCCAA</gDNA_template>
            <first_frame> *  *  K  K  E  L  Q  W  N  T  L  N  S  F  F  L  L  F  *  R  *  F  S  L  T  V  S  F  I  I  Q  K  N  Y  W  N  L  L  C  F  P  E  E  R  Q  S  S  G  I  R  F  *  Y  R  T  P  P  W  K  M  T  R  I  F  A  K  P  A  S  H  L  R  H  L  Q  Q  S  L  K  N  K  S  F  S  N  D  V  P  W  W  R  Q  I  L  D  P  N  S  D  I  V  N  R  W  N  Y  V  F  L  L  T  C  L  I  S  L  F  I  D  P  L  Y  F  Y  V  P  F  V  S  D  R  A  C  M  S  T  D  D  E  A  A  R  E  I  T  I  Y  R  S  L  T  D  I  F  Y  F  L  H  I  A  M  K  F  R  T  A  F  V  A  P  S  S  R  V  F  G  R  G  E  L  V  M  D  P  R  E  I  A  I  R  Y  L  K  T  D  F  I  V  D  F  T  A  A  L  P  L  P  Q  :  I  V  I  R  Y  V  I  P  A  A  K  R  N  G  S  G  H  S  K  S  T  L  A  L  I  V  L  I  Q  Y  V  P  </first_frame>
            <second_frame>  D  E  K  R  S  F  N  G  T  L  L  I  H  S  S  F  F  S  S  A  N  F  H  S  L  F  H  S  *  Y  K  K  I  I  G  I  C  C  V  F  Q  K  R  D  N  L  P  E  S  D  F  D  I  G  L  R  H  G  R  *  L  E  Y  L  Q  S  R  R  L  T  S  V  I  Y  S  N  L  *  R  T  N  H  F  R  T  M  C  H  G  G  A  K  F  S  I  Q  T  A  I  S  S  I  A  G  T  M  S  S  S  L  P  V  S  S  L  F  S  S  I  H  S  T  S  T  Y  L  S  S  A  I  E  L  V  C  P  L  M  T  K  P  P  V  K  L  P  S  I  V  L  S  P  T  S  F  T  S  F  T  L  P  *  S  S  A  Q  L  L  L  L  L  A  L  G  F  S  A  G  V  S  L  L  W  I  P  V  K  L  L  Y  D  I  S  K  L  I  S  S  L  I  L  Q  L  L  F  P  C  L  K :   L  L  F  A  M  *  S  Q  Q  P  K  E  M  V  R  V  I  P  K  V  H  L  H  L  S  F  S  Y  N  M  C  Q </second_frame>
            <third_frame>   M  K  K  G  A  S  M  E  H  S  *  F  I  L  P  S  F  L  A  L  I  F  T  H  C  F  I  H  N  T  K  K  L  L  E  S  V  V  F  S  R  R  E  T  I  F  R  N  P  I  L  I  S  D  S  A  M  E  D  D  *  N  I  C  K  A  G  V  S  P  P  S  F  T  A  I  F  E  E  Q  I  I  F  E  R  C  A  M  V  A  P  N  S  R  S  K  Q  R  Y  R  Q  S  L  E  L  C  L  P  P  Y  L  S  H  L  S  F  H  R  S  T  L  L  L  R  T  F  R  Q  R  *  S  L  Y  V  H  *  *  R  S  R  P  *  N  Y  H  L  S  F  S  H  R  H  L  L  L  P  S  H  C  H  E  V  P  H  S  F  C  C  S  *  L  *  G  F  R  P  G  *  A  C  Y  G  S  P  *  N  C  Y  T  I  S  Q  N  *  F  H  R  *  F  Y  S  C  S  S  P  A  S   : N  C  Y  S  L  C  N  P  S  S  Q  K  K  W  F  G  S  F  Q  K  Y  T  C  T  Y  R  S  H  T  I  C  A   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02HBa0236E02.1" strand="-"/>
                <serials PGL_serial="25" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="131620" stop="131153"/>
                    <exon start="131080" stop="130985"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>564</number_coding_nucleotides>
                  <number_encoded_amino_acids>188</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>YRTPPWKMTRIFAKPASHLRHLQQSLKNKSFSNDVPWWRQILDPNSDIVNRWNYVFLLTCLISLFIDPLYFYVPFVSDRACMSTDDEAAREITIYRSLTDIFYFLHIAMKFRTAFVAPSSRVFGRGELVMDPREIAIRYLKTDFIVDFTAALPLPQIVIRYVIPAAKRNGSGHSKSTLALIVLIQYVP</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="26" PGL_strand="+" PGL_start="131364" PGL_stop="131776"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="131364" e_stop="131776"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="131364" e_stop="131776" e_length="413"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="131364" stop="131776"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E294278" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="26" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>TCATCAGTGGACATACAAGCTCTATCGCTGACGAAAGGTACGTAGAAGTAGAGTGGATCGATGAAAAGAGAGATGAGACAGGTAAGGAGGAAGACATAGTTCCAGCGATTGACGATATCGCTGTTTGGATCGAGAATTTGGCGCCACCATGGCACATCGTTCGAAAATGATTTGTTCTTCAAAGATTGCTGTAAATGACGGAGGTGAGACGCCGGCTTTGCAAATATTCTAGTCATCTTCCATGGCGGAGTCCGATATCAAAATCGGATTCCGGAAGATTGTCTCTCTTCTGGAAAACACAACAGATTCCAATAATTTTTTTGTATTATGAATGAAACAGTGAGTGAAAATTAGCGCTAGAAAAGAAGGAAGAATGAATTAAGAGTGTTCCATTGAAGCTCCTTTTTTCATCA</gDNA_template>
            <first_frame> S  S  V  D  I  Q  A  L  S  L  T  K  G  T  *  K  *  S  G  S  M  K  R  E  M  R  Q  V  R  R  K  T  *  F  Q  R  L  T  I  S  L  F  G  S  R  I  W  R  H  H  G  T  S  F  E  N  D  L  F  F  K  D  C  C  K  *  R  R  *  D  A  G  F  A  N  I  L  V  I  F  H  G  G  V  R  Y  Q  N  R  I  P  E  D  C  L  S  S  G  K  H  N  R  F  Q  *  F  F  C  I  M  N  E  T  V  S  E  N  *  R  *  K  R  R  K  N  E  L  R  V  F  H  *  S  S  F  F  H   </first_frame>
            <second_frame>  H  Q  W  T  Y  K  L  Y  R  *  R  K  V  R  R  S  R  V  D  R  *  K  E  R  *  D  R  *  G  G  R  H  S  S  S  D  *  R  Y  R  C  L  D  R  E  F  G  A  T  M  A  H  R  S  K  M  I  C  S  S  K  I  A  V  N  D  G  G  E  T  P  A  L  Q  I  F  *  S  S  S  M  A  E  S  D  I  K  I  G  F  R  K  I  V  S  L  L  E  N  T  T  D  S  N  N  F  F  V  L  *  M  K  Q  *  V  K  I  S  A  R  K  E  G  R  M  N  *  E  C  S  I  E  A  P  F  F  I  </second_frame>
            <third_frame>   I  S  G  H  T  S  S  I  A  D  E  R  Y  V  E  V  E  W  I  D  E  K  R  D  E  T  G  K  E  E  D  I  V  P  A  I  D  D  I  A  V  W  I  E  N  L  A  P  P  W  H  I  V  R  K  *  F  V  L  Q  R  L  L  *  M  T  E  V  R  R  R  L  C  K  Y  S  S  H  L  P  W  R  S  P  I  S  K  S  D  S  G  R  L  S  L  F  W  K  T  Q  Q  I  P  I  I  F  L  Y  Y  E  *  N  S  E  *  K  L  A  L  E  K  K  E  E  *  I  K  S  V  P  L  K  L  L  F  S  S </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <none gDNA_id="C02HBa0236E02.1"/>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
  </PGL_module>
</GTH_output>
<!--
$ general statistics:
$ 831 chains have been computed
$ 
$ memory statistics:
$ 4055520 bytes spliced alignments in total
$ 716 spliced alignments have been stored
$ 5664 bytes was the average size of a spliced alignment
$ 81176 bytes predicted gene locations in total
$ 26 predicted gene locations have been stored
$ 3122 bytes was the average size of a predicted gene location
$ 1 megabytes was the average size of the backtrace matrix
$ 916 backtrace matrices have been allocated
$ 
$ date finished: 2009-12-01 10:28:23
-->
