<?xml version="1.0" encoding="ISO-8859-1"?>
<GTH_output xmlns="http://www.genomethreader.org/GTH_output/" GTH_XML_version="1.1">
  <header xmlns="http://www.genomethreader.org/GTH_output/header/">
    <source program="GenomeThreader" version="0.9.54" build_date="2006-07-28 11:55:15" run_date="2009-12-01 10:31:11"/>
    <gDNA_template_files>
      <temp_name>/tmp/bac-submission-temp-C02HBa0320D04-o5wK2/GenomeThreader_SGN_markers/un_xed_seqs</temp_name>
    </gDNA_template_files>
    <reference_files>
      <file ref_name="/tmp/bac-submission-temp-C02HBa0320D04-o5wK2/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_markers" type="ESTcDNA"/>
    </reference_files>
    <splice_site_parameters parameter_type="Bayesian" species="arabidopsis"/>
    <parameters>
      <parameter name="bssmfile" value="arabidopsis"/>
      <parameter name="scorematrixfile" value="BLOSUM62"/>
      <parameter name="searchmode" value="forward=True,reverse=True)"/>
      <parameter name="translationtable" value="1"/>
      <parameter name="frompos" value="0"/>
      <parameter name="topos" value="0"/>
      <parameter name="width" value="0"/>
      <parameter name="verbose" value="False"/>
      <parameter name="skipalignmentout" value="False"/>
      <parameter name="showintronmaxlen" value="120"/>
      <parameter name="minorflen" value="64"/>
      <parameter name="showseqnums" value="False"/>
      <parameter name="gs2out" value="False"/>
      <parameter name="maskpolyatails" value="False"/>
      <parameter name="noautoindex" value="False"/>
      <parameter name="minmatchlen" value="20"/>
      <parameter name="seedlength" value="16"/>
      <parameter name="exdrop" value="2"/>
      <parameter name="online" value="False"/>
      <parameter name="inverse" value="False"/>
      <parameter name="exact" value="False"/>
      <parameter name="chainwf" value="0.500000"/>
      <parameter name="gcmaxgapwidth" value="1000000"/>
      <parameter name="gcmincoverage" value="50"/>
      <parameter name="introncutout" value="False"/>
      <parameter name="autointroncutout" value="0"/>
      <parameter name="icinitialdelta" value="50"/>
      <parameter name="iciterations" value="2"/>
      <parameter name="icdeltaincrease" value="50"/>
      <parameter name="icminremintronlen" value="10"/>
      <parameter name="nou12intronmodel" value="False"/>
      <parameter name="u12donorprob" value="0.990000"/>
      <parameter name="u12donorprob1mism" value="0.900000"/>
      <parameter name="probies" value="0.500000"/>
      <parameter name="probdelgen" value="0.030000"/>
      <parameter name="identityweight" value="2.000000"/>
      <parameter name="mismatchweight" value="-2.000000"/>
      <parameter name="undetcharweight" value="0.000000"/>
      <parameter name="deletionweight" value="-4.000000"/>
      <parameter name="dpminexonlen" value="5"/>
      <parameter name="dpminintronlen" value="50"/>
      <parameter name="shortexonpenal" value="100"/>
      <parameter name="shortintronpenal" value="100"/>
      <parameter name="wzerotransition" value="80"/>
      <parameter name="wdecreasedoutput" value="80"/>
      <parameter name="leadcutoffsmode" value="RELAXED"/>
      <parameter name="termcutoffsmode" value="STRICT"/>
      <parameter name="cutoffsminexonlen" value="5"/>
      <parameter name="scoreminexonlen" value="50"/>
      <parameter name="minaveragessp" value="0.500000"/>
      <parameter name="minalignmentscore" value="0.900000"/>
      <parameter name="maxalignmentscore" value="1.000000"/>
      <parameter name="mincoverage" value="0.900000"/>
      <parameter name="maxcoverage" value="100.000000"/>
      <parameter name="intermediate" value="False"/>
      <parameter name="sortags" value="False"/>
      <parameter name="sortagswf" value="1.000000"/>
      <parameter name="first" value="0"/>
      <parameter name="exondistri" value="False"/>
      <parameter name="introndistri" value="False"/>
      <parameter name="refseqcovdistri" value="False"/>
    </parameters>
    <overall_reference_type>ESTcDNA</overall_reference_type>
  </header>
  <alignment_module>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0320D04-o5wK2/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_markers" ref_id="T1537" ref_strand="+" ref_description="T1537">
      <seq>aaaagtgaaaggtattataaagcaaattccaacagcaaagattctccataaacactttcctaatgctacagttttccttaactatacaaaatcttggtagagaaaatcttgaagcaaatctcacatggccatttcaaatttgtccatttttattattttccttgtacttcaatttctatgcataacagaagctcaatcaagcatttgtagaaattcgtgtggcgatatcccaattcagtatccttttggcattgatgatggctgtggaagtccattttatcgacacattcttgtatgcactggtggacagcttcaacttagaaccccttctggtagatatcctgttagaaatttaagttatatggatccacatattcttgtgaccgatcccttaatgtggaattgtctagatggtgacaattgtcgacctaccaggcgcgttagtctagatactagcacacatttcactttgtcctctgaaaatgactacttgttctttaatt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0320D04-o5wK2/GenomeThreader_SGN_markers/un_xed_seqs" temp_id="C02HBa0320D04.2" temp_strand="+" temp_description="C02HBa0320D04.2  AC215437.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0320D04 sequenced_by:kribb upload_account_name:korea">
        <position start="5754" stop="6855"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="6054" g_stop="6555" g_length="502"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="503" r_length="503" r_score="0.968"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0320D04.2" gen_strand="+" ref_id="T1537" ref_strand="+">
        <total_alignment_score>0.968</total_alignment_score>
        <cumulative_length_of_scored_exons>502</cumulative_length_of_scored_exons>
        <coverage percentage="0.998" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0320D04.2" gen_strand="+"/>
        <rDNA rDNA_id="T1537" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="6054" e_stop="6555"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAAGTGAAAGGTA-TATAAAGCAAAAACCAACAGCAAAGATTCTCCATAAACACTTTCCCAATGCTACAGTTTTCCTTAACTATACAAAATCTTGGTAGAGAAAATCTTCAAGCAAATCTCACATGGCCATTTCAAATTTGTCCATCTTTATTATTTTCCTTGTACTTCAATTTCTATGCATAACAGAAGCTCAATCAAGCATTTGTAGAAATTCTTGTGGCGATATCCCAATTCAGTATCCTTTTGGCATTGATGATGGCTGTGGAAGTCCATTTTATCGACACATTCTTGTATGCACTGGTGGTCAGCTTCAACTCAGAACCCCTTCTGGTAGATATCCTGTTAGAAATTTGAGTTATATGGATCCACATATTCTTGTGACCGATCCCTTAATGTGGAATTGTCTAGATGGTGACAATTTTCGACCTACCAGGCCGTTTAGCCTAGATACTAGCACACATTTCACTTTGTCCTCTGAAAATGACTACTTGTTCTTTAATT</genome_strand>
        <mrna_strand>AAAAGTGAAAGGTATTATAAAGCAAATTCCAACAGCAAAGATTCTCCATAAACACTTTCCTAATGCTACAGTTTTCCTTAACTATACAAAATCTTGGTAGAGAAAATCTTGAAGCAAATCTCACATGGCCATTTCAAATTTGTCCATTTTTATTATTTTCCTTGTACTTCAATTTCTATGCATAACAGAAGCTCAATCAAGCATTTGTAGAAATTCGTGTGGCGATATCCCAATTCAGTATCCTTTTGGCATTGATGATGGCTGTGGAAGTCCATTTTATCGACACATTCTTGTATGCACTGGTGGACAGCTTCAACTTAGAACCCCTTCTGGTAGATATCCTGTTAGAAATTTAAGTTATATGGATCCACATATTCTTGTGACCGATCCCTTAATGTGGAATTGTCTAGATGGTGACAATTGTCGACCTACCAGGCGCGTTAGTCTAGATACTAGCACACATTTCACTTTGTCCTCTGAAAATGACTACTTGTTCTTTAATT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0320D04-o5wK2/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_markers" ref_id="TG353-R" ref_strand="+" ref_description="TG353-R">
      <seq>tatagggagacaagcttgcatgcctgcagttgaagcatgaataacatcgagtagtccatccgttgcacgagcaagatagcaatgatcaatccaaacattggacgatgtaaacacacttatagcatcaccatcagagcctgatctttcaccaacatgttcaggactactcctaaccataccctttttaccaggcttacaatcatgaatactaatcccatgaataataacatttgtgacatagtccaatgtgatacatggaccattagagatttccacttttgctcctctgccatcgatagtcttataactattcaccataagttcattttcaagtgtaagtaccatgtcccttttgaaaattatccaaagtggctcggactgaattgcaccatacctaagtgtgcctggtttaggatttatagggtcatcagaagagtcattcacaatataaatgtcaccatatttaccacctatggtactacttccaaagcctattgcacaatccgctaaagcctttcgattggatgaccaatcacctttccatctccaacacgaatcgatgacat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0320D04-o5wK2/GenomeThreader_SGN_markers/un_xed_seqs" temp_id="C02HBa0320D04.2" temp_strand="+" temp_description="C02HBa0320D04.2  AC215437.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0320D04 sequenced_by:kribb upload_account_name:korea">
        <position start="8468" stop="9610"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="8774" g_stop="9310" g_length="537"/>
          <reference_exon_boundary r_type="cDNA" r_start="30" r_stop="566" r_length="537" r_score="0.993"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0320D04.2" gen_strand="+" ref_id="TG353-R" ref_strand="+">
        <total_alignment_score>0.993</total_alignment_score>
        <cumulative_length_of_scored_exons>537</cumulative_length_of_scored_exons>
        <coverage percentage="0.949" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0320D04.2" gen_strand="+"/>
        <rDNA rDNA_id="TG353-R" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="8774" e_stop="9310"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTGAAGCATGAATAACATCGAGTAGTCCATCCGTTGCACGAGCAAGATAGCAATGATCAATCCAAACATTGGACGATGTAAACACACTTATAGCATCACCATCAGAGCCTGATCTTTCACCAACATGTTCAGGACTACTCCTAACCATACCCTTTTTACCAGGCTTACAATCATGAATACTAATCCCATGAATAATAACATTTGTGACATAGTCCAATGTGATACATGGACCATTAGAGATTTCCACTTTCGCTCCTCTGCCATCGATAGTCTTATAACTATTCACCATAAGTTCATTTTCAAGTGTAAGTACCATGTCCCTTTTGAAAATTATCCAAAGTGGCTCGGACTGAATTGCACCATACCTAAGTGTGCCTGGTTTAGGATTTATAGGGTCATCAGAAGAGTCATTCACAATATAAATGTCACCATATTTACCACCTATGGTACTACTTCCAAAGCCTATTGCACAATCCGCTAAAGCCTTCCGATTGGATGACCAATCGCCTTTCCATCTCCAACACGAGTCGATGACAT</genome_strand>
        <mrna_strand>TTGAAGCATGAATAACATCGAGTAGTCCATCCGTTGCACGAGCAAGATAGCAATGATCAATCCAAACATTGGACGATGTAAACACACTTATAGCATCACCATCAGAGCCTGATCTTTCACCAACATGTTCAGGACTACTCCTAACCATACCCTTTTTACCAGGCTTACAATCATGAATACTAATCCCATGAATAATAACATTTGTGACATAGTCCAATGTGATACATGGACCATTAGAGATTTCCACTTTTGCTCCTCTGCCATCGATAGTCTTATAACTATTCACCATAAGTTCATTTTCAAGTGTAAGTACCATGTCCCTTTTGAAAATTATCCAAAGTGGCTCGGACTGAATTGCACCATACCTAAGTGTGCCTGGTTTAGGATTTATAGGGTCATCAGAAGAGTCATTCACAATATAAATGTCACCATATTTACCACCTATGGTACTACTTCCAAAGCCTATTGCACAATCCGCTAAAGCCTTTCGATTGGATGACCAATCACCTTTCCATCTCCAACACGAATCGATGACAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0320D04-o5wK2/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_markers" ref_id="TG353-F" ref_strand="+" ref_description="TG353-F">
      <seq>ttgaagcatgaataacatcgagtagtccatccgttgcacgagcaagatagcaatgatcaatccaaacattggacgatgtaaacacacttatagcatcaccatcagagcctgatctttcaccaacatgttcaggactactcctaaccataccctttttaccaggcttacaatcatgaatactaatcccatgaataataacatttgtgacatagtccaatgtgatacatggaccattagagatttccacttttgctcctctgccatcgatagtcttataactattcaccataagttcattttcaagtgtaagtaccatgtcccttttgaaaattatccaaagtggctcggactgaattgcaccatacctaagtgtgcctggtttaggatttatagggtcatcagaagagtcattcacaatataaatgtcaccatatttaccacctatggtactacttccaaagcctattgcacaatccgctaaagcctttcgattggatgaccaatcacctttccatctccaacacgaatcgat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0320D04-o5wK2/GenomeThreader_SGN_markers/un_xed_seqs" temp_id="C02HBa0320D04.2" temp_strand="+" temp_description="C02HBa0320D04.2  AC215437.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0320D04 sequenced_by:kribb upload_account_name:korea">
        <position start="8474" stop="9605"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="8774" g_stop="9305" g_length="532"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="532" r_length="532" r_score="0.992"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0320D04.2" gen_strand="+" ref_id="TG353-F" ref_strand="+">
        <total_alignment_score>0.992</total_alignment_score>
        <cumulative_length_of_scored_exons>532</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0320D04.2" gen_strand="+"/>
        <rDNA rDNA_id="TG353-F" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="8774" e_stop="9305"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTGAAGCATGAATAACATCGAGTAGTCCATCCGTTGCACGAGCAAGATAGCAATGATCAATCCAAACATTGGACGATGTAAACACACTTATAGCATCACCATCAGAGCCTGATCTTTCACCAACATGTTCAGGACTACTCCTAACCATACCCTTTTTACCAGGCTTACAATCATGAATACTAATCCCATGAATAATAACATTTGTGACATAGTCCAATGTGATACATGGACCATTAGAGATTTCCACTTTCGCTCCTCTGCCATCGATAGTCTTATAACTATTCACCATAAGTTCATTTTCAAGTGTAAGTACCATGTCCCTTTTGAAAATTATCCAAAGTGGCTCGGACTGAATTGCACCATACCTAAGTGTGCCTGGTTTAGGATTTATAGGGTCATCAGAAGAGTCATTCACAATATAAATGTCACCATATTTACCACCTATGGTACTACTTCCAAAGCCTATTGCACAATCCGCTAAAGCCTTCCGATTGGATGACCAATCGCCTTTCCATCTCCAACACGAGTCGAT</genome_strand>
        <mrna_strand>TTGAAGCATGAATAACATCGAGTAGTCCATCCGTTGCACGAGCAAGATAGCAATGATCAATCCAAACATTGGACGATGTAAACACACTTATAGCATCACCATCAGAGCCTGATCTTTCACCAACATGTTCAGGACTACTCCTAACCATACCCTTTTTACCAGGCTTACAATCATGAATACTAATCCCATGAATAATAACATTTGTGACATAGTCCAATGTGATACATGGACCATTAGAGATTTCCACTTTTGCTCCTCTGCCATCGATAGTCTTATAACTATTCACCATAAGTTCATTTTCAAGTGTAAGTACCATGTCCCTTTTGAAAATTATCCAAAGTGGCTCGGACTGAATTGCACCATACCTAAGTGTGCCTGGTTTAGGATTTATAGGGTCATCAGAAGAGTCATTCACAATATAAATGTCACCATATTTACCACCTATGGTACTACTTCCAAAGCCTATTGCACAATCCGCTAAAGCCTTTCGATTGGATGACCAATCACCTTTCCATCTCCAACACGAATCGAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0320D04-o5wK2/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_markers" ref_id="cTOA-28-F21" ref_strand="+" ref_description="cTOA-28-F21">
      <seq>tcacttcggcacgaggattttgcttccggaggggcaagggcaaggaaattgctacaagaccctctacaggaagtcttccagttggcacagataaagtgaatatggaggtacaagagcaaagggcgaagcctgtggttgctgttgctgacttgaagcccccacctaccgaaaaggtgactgttgaaatgatacaaggaaagaatggatctgtcaggagagtgaagtctccaataactgcatctgcttatactgttgctgcattgcaaacagcaacaaacagcttcagtcaagaaaatctcattggtgaaggatctcttgggcgtgtttatagggcagagtttcctaatgggaagataatggtcataaaaaagatcgacagtgcagcactgtcgctgcaggaggaagataactttctcgaagctgtctcaaatatgtcaaggctgagacacccaaacattgttcaattgataggatattgtgctgagcatggacagcgtcttctggtttatgaccatgttgcaaatggtagcttgcatgatatgctgcactttgctgatgagaggagcgaattgcttacttggaatgcccgggttagagtagcacttggcactgctcgagctttagagtacttgcatgaagtctgtctaccttctgttgtacatagaaacttcaaatccgcaaatattttactagatgaagagctcagtccccatttatcagattgtgggttagcagctttgactcccacacagaacgccaggtgtcatctacacagatgattgggtcattcggctatagcgctcctgaatttgctttatctgga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0320D04-o5wK2/GenomeThreader_SGN_markers/un_xed_seqs" temp_id="C02HBa0320D04.2" temp_strand="+" temp_description="C02HBa0320D04.2  AC215437.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0320D04 sequenced_by:kribb upload_account_name:korea">
        <position start="141797" stop="145253"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="142098" g_stop="142184" g_length="87"/>
          <reference_exon_boundary r_type="cDNA" r_start="10" r_stop="96" r_length="87" r_score="0.966"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="142185" i_stop="142336" i_length="152">
            <donor d_prob="0.992" d_score="1.00"/>
            <acceptor a_prob="0.985" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="142337" g_stop="142593" g_length="257"/>
          <reference_exon_boundary r_type="cDNA" r_start="97" r_stop="353" r_length="257" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="142594" i_stop="143992" i_length="1399">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.809" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="143993" g_stop="144264" g_length="272"/>
          <reference_exon_boundary r_type="cDNA" r_start="354" r_stop="625" r_length="272" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="144265" i_stop="144346" i_length="82">
            <donor d_prob="0.990" d_score="1.00"/>
            <acceptor a_prob="0.991" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="144347" g_stop="144482" g_length="136"/>
          <reference_exon_boundary r_type="cDNA" r_start="626" r_stop="760" r_length="135" r_score="0.985"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="144483" i_stop="144890" i_length="408">
            <donor d_prob="0.559" d_score="0.98"/>
            <acceptor a_prob="0.986" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="144891" g_stop="144953" g_length="63"/>
          <reference_exon_boundary r_type="cDNA" r_start="761" r_stop="823" r_length="63" r_score="0.984"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0320D04.2" gen_strand="+" ref_id="cTOA-28-F21" ref_strand="+">
        <total_alignment_score>0.993</total_alignment_score>
        <cumulative_length_of_scored_exons>815</cumulative_length_of_scored_exons>
        <coverage percentage="0.990" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0320D04.2" gen_strand="+"/>
        <rDNA rDNA_id="cTOA-28-F21" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="142098" e_stop="142184"/>
          <exon e_start="142337" e_stop="142593"/>
          <exon e_start="143993" e_stop="144264"/>
          <exon e_start="144347" e_stop="144482"/>
          <exon e_start="144891" e_stop="144953"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CACTTGTATTTTGCTTCCGGAGGGGCAAGGGCAAGGAAATTGCTACAAGACCCTCTACAGGAAGTCTTCCAGTTGGCACAGATAAAGGTGTGTTCCCTTAACTTGGTCCCTTCCTGACACAATATTGTCATTGGTGCTAATACCCTCAGATGACTAATAGTTGTGTTGTGATGTGCCATCTTAGTTTGGAAATTGGTACGAACTTCGCTGATTTCTCATGTATTTCTGCTTAATCTTAGTGAATATGGAGGTACAAGAGCAAAGGGCGAAGCCTGTGGTTGCTGTTGCTGACTTGAAGCCCCCACCTACCGAAAAGGTGACTGTTGAAATGATACAAGGAAAGAATGGATCTGTCAGGAGAGTGAAGTCTCCAATAACTGCATCTGCTTATACTGTTGCTGCATTGCAAACAGCAACAAACAGCTTCAGTCAAGAAAATCTCATTGGTGAAGGATCTCTTGGGCGTGTTTATAGGGCAGAGTTTCCTAATGGGAAGGTAATTTCAGACGTTTAATGTTGTCACTCTTACGTTTCCTACTCGTGATGTGCATTCAAAACTATTTGAAGCTGAACAATATTGAATAAATTCAATCGGTCTCTCATGGACGTCTTTCATTTTTGATGCTTTGGAGAAACACATACTTGTGAGTTATATAATGTTCATCAGATACATAAGGACATCAAAAGGGATATATAAAGATGTTGGCCACTCCACCTATCACCCTGTTGCTAAGATGCTTTAACATAGAATCAAGCCGTTACACGTGTGGGACAATGTTGCATTACCTAATGTCCAACCTCGGGCAAATGAGGCTGTAATGATATGGTACCCGACCATAACTCAACCCCAAAAGTTAACTCATGAGGGGAGGATTGCTCAAGTCCGTATAAGGAGACCCATCAGCCTATTCCCCAACCAATGTGGGACTTTACCCTCTACCGGGAGCCCAAATGGAGATGTGGTCCAATCAGAGATGGACCTGGCAAAGATATGGCACCAGGGTCTAACTCAATCCCAAAAGCTTAGCTCATGAGGGGATGATTGCCCAAGTCCATATATGGAGACCACTAGTCCATTCCTCAACCAATGTGAGACTTTTACCCACTCTAACAAAGGCATCCAAAGTAGAATATAAGGTTCTTGTCCTACTTTATCCATTGCCTTAACGTTATGGTTGAACCCTTAGATTCTTTCACAATATCTGTCAAACCGGGCAAACACTAAAAGGGTACATACTTGATCTATGTGTTACTAAACCTGAGTAGATGTTAGTAGACTTCTTGATACTCTGTTCGCATGGGAGTTTAAGGATTGGGTCCTCTTGCTAGTACATAATCTGGTTTTGAGGTGATTTTTTTAACTGAGATTAAGTCCTTTATACTCTTTGATTGAACTTGCTCTTTTAGGTCTTTCGCAAAGTTGATTGCCCACAGTAGGACATTCTGATGAACACATGTCAATTGTTCACTCCTCTGGGTGGCCTGGTCACATCTTTGCTTTTATATGGATAGGTGTAATGATATGGTCACTTTGATGGTCATCTCACTTGTCTTCTCAGCCTGATTTAACTATGATACTATAACCTTGTCCTTTGGTTACATCATGCAATCCTAAGCAAAAATATTCTTAGTAGTTTCAAAGTCTGACATTATATATCTTCTACTTTGTGGTTTATTATTGGATGTGCTGCTGGTTATTTCTTTTTGAATGAACCAATTGTGTTGACTGTTTTTCTGCTCCAAACTTGATGCCAACTGTGTCCCAATAAATGATTTAAGAATTTCATATGTCAACAACATTTTTGATGAGGAAACTTTTAGTTTATTATTCATGTAGTTTCTAAGGAAGGTGCCAACTGAAAATCTGAATTGATCTTTTGAACTGTCCTTGCCAGATAATGGTCATAAAAAAGATCGACAGTGCAGCACTGTCGCTGCAGGAGGAAGATAACTTTCTCGAAGCTGTCTCAAATATGTCAAGGCTGAGACACCCAAACATTGTTCAATTGATAGGATATTGTGCTGAGCATGGACAGCGTCTTCTGGTTTATGACCATGTTGCAAATGGTAGCTTGCATGATATGCTGCACTTTGCTGATGAGAGGAGCGAATTGCTTACTTGGAATGCCCGGGTTAGAGTAGCACTTGGCACTGCTCGAGCTTTAGAGTATGTTATAGCTGTATAGTATTTTACTTGTCTTGCCCTTCTCTTGTTGAGTTAGCTTAAAACTTGAATGTCTTCTTTTCAGGTACTTGCATGAAGTCTGTCTACCTTCTGTTGTACATAGAAACTTCAAATCCGCAAATATTTTACTAGATGAAGAGCTCAATCCCCATTTATCAGATTGTGGGTTAGCAGCTTTGACTCCCAACACAGAACGCCAGGTGAGTGAGTAAAGAAGATTTAATCGACGTCGTTGTTTTAACGGAGGGCGTTAATAATTTTGGGTGGTAGTGATGCATATCATGTTTATGAGATGATGTCAATCAACTTACCTAGTACTGTAGTAGGAGCAATATTTATAAGCAACTATTTCTAGGTAGATCTTGACAGACTTAGTCATGAGACTGGCAATTCTGATTGTGGCAGCTTAGCATTGTTTTCTTATTCTTCTGGAGCAATCTTGTTAGGTGCTTAAACACTTGGATTACCACAGTGCACAAACTTTCAGGTGAATTATTTTTGTGAAAAGAGAACCTCCTTGTACAGAAGCTCGGGTGAAGGAAGCTAATGCGGGAAGGCTAATTGATTCTGTTATGGGCATTGCCTAAAATTGTTCTGAATGTTGACAGGTGTCATCTACACAGATGATTGGTTCATTCGGCTATAGCGCTCCTGAATTTGCTTTATCTGGA</genome_strand>
        <mrna_strand>CACGAGGATTTTGCTTCCGGAGGGGCAAGGGCAAGGAAATTGCTACAAGACCCTCTACAGGAAGTCTTCCAGTTGGCACAGATAAAG........................................................................................................................................................TGAATATGGAGGTACAAGAGCAAAGGGCGAAGCCTGTGGTTGCTGTTGCTGACTTGAAGCCCCCACCTACCGAAAAGGTGACTGTTGAAATGATACAAGGAAAGAATGGATCTGTCAGGAGAGTGAAGTCTCCAATAACTGCATCTGCTTATACTGTTGCTGCATTGCAAACAGCAACAAACAGCTTCAGTCAAGAAAATCTCATTGGTGAAGGATCTCTTGGGCGTGTTTATAGGGCAGAGTTTCCTAATGGGAAG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATAATGGTCATAAAAAAGATCGACAGTGCAGCACTGTCGCTGCAGGAGGAAGATAACTTTCTCGAAGCTGTCTCAAATATGTCAAGGCTGAGACACCCAAACATTGTTCAATTGATAGGATATTGTGCTGAGCATGGACAGCGTCTTCTGGTTTATGACCATGTTGCAAATGGTAGCTTGCATGATATGCTGCACTTTGCTGATGAGAGGAGCGAATTGCTTACTTGGAATGCCCGGGTTAGAGTAGCACTTGGCACTGCTCGAGCTTTAGA..................................................................................GTACTTGCATGAAGTCTGTCTACCTTCTGTTGTACATAGAAACTTCAAATCCGCAAATATTTTACTAGATGAAGAGCTCAGTCCCCATTTATCAGATTGTGGGTTAGCAGCTTTGACTCCC-ACACAGAACGCCAG........................................................................................................................................................................................................................................................................................................................................................................................................................GTGTCATCTACACAGATGATTGGGTCATTCGGCTATAGCGCTCCTGAATTTGCTTTATCTGGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0320D04-o5wK2/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_markers" ref_id="C2_At4g22130" ref_strand="+" ref_description="C2_At4g22130">
      <seq>ctatgggaagataatggtcatcaaaaagatcgacagtgctgcactgtcgctgcaggaggaagataactttcttggaagctgtctcaaatatgtcaaggctgagacacccaaacattgttcaattgataggatattgtgctgagcatggacagcgtcttctggtttatgaccatgttgcaaatggtagcttgcatgatatgctgcactttgctgatgagaggagcgaattgcttacttggaacgcccgggttagagtagcacttggcactgctcgagctttagagtacttgcatgaagtctgtctaccttctgttgtacatagaaacttcaaatccgcaaatattttactagatgaagagctcaatccccatttatcagattgtgggttagcagctttgactccaaacacagaacgccaggtgtcatccacacaaatgattggttcattcggttatagcgctcctgaatttgctttatctggaatatacacggtaaaaagtgatgtatatagttttggtgtggtgatgttggaattgttgacaggaaggaagccacttgatagttcaagggtgagatcggaacagtcccttgtgagatgggctacgcctcaactccatgatatagatgccttgtcaaaaatggttgatcctgcactaaatggcatgtatcctgcaaagtctttgtcccgttttcgctgatattattgcactc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0320D04-o5wK2/GenomeThreader_SGN_markers/un_xed_seqs" temp_id="C02HBa0320D04.2" temp_strand="+" temp_description="C02HBa0320D04.2  AC215437.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0320D04 sequenced_by:kribb upload_account_name:korea">
        <position start="143684" stop="145565"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="143993" g_stop="144264" g_length="272"/>
          <reference_exon_boundary r_type="cDNA" r_start="11" r_stop="283" r_length="273" r_score="0.978"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="144265" i_stop="144346" i_length="82">
            <donor d_prob="0.990" d_score="0.98"/>
            <acceptor a_prob="0.991" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="144347" g_stop="144482" g_length="136"/>
          <reference_exon_boundary r_type="cDNA" r_start="284" r_stop="419" r_length="136" r_score="0.993"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="144483" i_stop="144890" i_length="408">
            <donor d_prob="0.559" d_score="0.98"/>
            <acceptor a_prob="0.986" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="144891" g_stop="145033" g_length="143"/>
          <reference_exon_boundary r_type="cDNA" r_start="420" r_stop="562" r_length="143" r_score="0.944"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="145034" i_stop="145117" i_length="84">
            <donor d_prob="0.985" d_score="0.94"/>
            <acceptor a_prob="0.992" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="145118" g_stop="145265" g_length="148"/>
          <reference_exon_boundary r_type="cDNA" r_start="563" r_stop="711" r_length="149" r_score="0.973"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0320D04.2" gen_strand="+" ref_id="C2_At4g22130" ref_strand="+">
        <total_alignment_score>0.973</total_alignment_score>
        <cumulative_length_of_scored_exons>699</cumulative_length_of_scored_exons>
        <coverage percentage="0.983" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0320D04.2" gen_strand="+"/>
        <rDNA rDNA_id="C2_At4g22130" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="143993" e_stop="144264"/>
          <exon e_start="144347" e_stop="144482"/>
          <exon e_start="144891" e_stop="145033"/>
          <exon e_start="145118" e_stop="145265"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATAATGGTCATAAAAAAGATCGACAGTGCAGCACTGTCGCTGCAGGAGGAAGATAACTTTC-TCGAAGCTGTCTCAAATATGTCAAGGCTGAGACACCCAAACATTGTTCAATTGATAGGATATTGTGCTGAGCATGGACAGCGTCTTCTGGTTTATGACCATGTTGCAAATGGTAGCTTGCATGATATGCTGCACTTTGCTGATGAGAGGAGCGAATTGCTTACTTGGAATGCCCGGGTTAGAGTAGCACTTGGCACTGCTCGAGCTTTAGAGTATGTTATAGCTGTATAGTATTTTACTTGTCTTGCCCTTCTCTTGTTGAGTTAGCTTAAAACTTGAATGTCTTCTTTTCAGGTACTTGCATGAAGTCTGTCTACCTTCTGTTGTACATAGAAACTTCAAATCCGCAAATATTTTACTAGATGAAGAGCTCAATCCCCATTTATCAGATTGTGGGTTAGCAGCTTTGACTCCCAACACAGAACGCCAGGTGAGTGAGTAAAGAAGATTTAATCGACGTCGTTGTTTTAACGGAGGGCGTTAATAATTTTGGGTGGTAGTGATGCATATCATGTTTATGAGATGATGTCAATCAACTTACCTAGTACTGTAGTAGGAGCAATATTTATAAGCAACTATTTCTAGGTAGATCTTGACAGACTTAGTCATGAGACTGGCAATTCTGATTGTGGCAGCTTAGCATTGTTTTCTTATTCTTCTGGAGCAATCTTGTTAGGTGCTTAAACACTTGGATTACCACAGTGCACAAACTTTCAGGTGAATTATTTTTGTGAAAAGAGAACCTCCTTGTACAGAAGCTCGGGTGAAGGAAGCTAATGCGGGAAGGCTAATTGATTCTGTTATGGGCATTGCCTAAAATTGTTCTGAATGTTGACAGGTGTCATCTACACAGATGATTGGTTCATTCGGCTATAGCGCTCCTGAATTTGCTTTATCTGGAATATACACTGTAAAAAGTGACGTATATAGTTTTGGTGTGGTAATGTTGGAGTTGTTAACAGGAAGGAAGCCACTTGATAGGTAAACTAGATCTTCAATACATTGCTAGTTAACTTACACTATTGAATTCTTTTAATGACTTGATTCTTGTTAAAAATCATATAGTTCAAGGGTGAGATCAGAGCAGTCCCTTGTGAGATGGGCTACGCCTCAACTCCATGATATAGATGCCTTGTCAAAAATGGTTGATCCTGCACTAAATGGCATGTATCCTGCAAAGTCTTTGTCCCG-TTTCGCTGATATTATTGCACTC</genome_strand>
        <mrna_strand>ATAATGGTCATCAAAAAGATCGACAGTGCTGCACTGTCGCTGCAGGAGGAAGATAACTTTCTTGGAAGCTGTCTCAAATATGTCAAGGCTGAGACACCCAAACATTGTTCAATTGATAGGATATTGTGCTGAGCATGGACAGCGTCTTCTGGTTTATGACCATGTTGCAAATGGTAGCTTGCATGATATGCTGCACTTTGCTGATGAGAGGAGCGAATTGCTTACTTGGAACGCCCGGGTTAGAGTAGCACTTGGCACTGCTCGAGCTTTAGA..................................................................................GTACTTGCATGAAGTCTGTCTACCTTCTGTTGTACATAGAAACTTCAAATCCGCAAATATTTTACTAGATGAAGAGCTCAATCCCCATTTATCAGATTGTGGGTTAGCAGCTTTGACTCCAAACACAGAACGCCAG........................................................................................................................................................................................................................................................................................................................................................................................................................GTGTCATCCACACAAATGATTGGTTCATTCGGTTATAGCGCTCCTGAATTTGCTTTATCTGGAATATACACGGTAAAAAGTGATGTATATAGTTTTGGTGTGGTGATGTTGGAATTGTTGACAGGAAGGAAGCCACTTGATAG....................................................................................TTCAAGGGTGAGATCGGAACAGTCCCTTGTGAGATGGGCTACGCCTCAACTCCATGATATAGATGCCTTGTCAAAAATGGTTGATCCTGCACTAAATGGCATGTATCCTGCAAAGTCTTTGTCCCGTTTTCGCTGATATTATTGCACTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
    <total_number_ESTs_reported>5</total_number_ESTs_reported>
    </alignment_module>
  <PGL_module xmlns="http://www.genomethreader.org/GTH_output/PGL_module/">
    <predicted_gene_location>
      <PGL_line PGL_serial="1" PGL_strand="+" PGL_start="6054" PGL_stop="6555"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="6054" e_stop="6555"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.968"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.968">
            <gDNA_exon_boundary e_start="6054" e_stop="6555" e_length="502"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="6054" stop="6555"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="T1537" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="1" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>AAAAGTGAAAGGTATATAAAGCAAAAACCAACAGCAAAGATTCTCCATAAACACTTTCCCAATGCTACAGTTTTCCTTAACTATACAAAATCTTGGTAGAGAAAATCTTCAAGCAAATCTCACATGGCCATTTCAAATTTGTCCATCTTTATTATTTTCCTTGTACTTCAATTTCTATGCATAACAGAAGCTCAATCAAGCATTTGTAGAAATTCTTGTGGCGATATCCCAATTCAGTATCCTTTTGGCATTGATGATGGCTGTGGAAGTCCATTTTATCGACACATTCTTGTATGCACTGGTGGTCAGCTTCAACTCAGAACCCCTTCTGGTAGATATCCTGTTAGAAATTTGAGTTATATGGATCCACATATTCTTGTGACCGATCCCTTAATGTGGAATTGTCTAGATGGTGACAATTTTCGACCTACCAGGCCGTTTAGCCTAGATACTAGCACACATTTCACTTTGTCCTCTGAAAATGACTACTTGTTCTTTAATT</gDNA_template>
            <first_frame> K  S  E  R  Y  I  K  Q  K  P  T  A  K  I  L  H  K  H  F  P  N  A  T  V  F  L  N  Y  T  K  S  W  *  R  K  S  S  S  K  S  H  M  A  I  S  N  L  S  I  F  I  I  F  L  V  L  Q  F  L  C  I  T  E  A  Q  S  S  I  C  R  N  S  C  G  D  I  P  I  Q  Y  P  F  G  I  D  D  G  C  G  S  P  F  Y  R  H  I  L  V  C  T  G  G  Q  L  Q  L  R  T  P  S  G  R  Y  P  V  R  N  L  S  Y  M  D  P  H  I  L  V  T  D  P  L  M  W  N  C  L  D  G  D  N  F  R  P  T  R  P  F  S  L  D  T  S  T  H  F  T  L  S  S  E  N  D  Y  L  F  F  N  </first_frame>
            <second_frame>  K  V  K  G  I  *  S  K  N  Q  Q  Q  R  F  S  I  N  T  F  P  M  L  Q  F  S  L  T  I  Q  N  L  G  R  E  N  L  Q  A  N  L  T  W  P  F  Q  I  C  P  S  L  L  F  S  L  Y  F  N  F  Y  A  *  Q  K  L  N  Q  A  F  V  E  I  L  V  A  I  S  Q  F  S  I  L  L  A  L  M  M  A  V  E  V  H  F  I  D  T  F  L  Y  A  L  V  V  S  F  N  S  E  P  L  L  V  D  I  L  L  E  I  *  V  I  W  I  H  I  F  L  *  P  I  P  *  C  G  I  V  *  M  V  T  I  F  D  L  P  G  R  L  A  *  I  L  A  H  I  S  L  C  P  L  K  M  T  T  C  S  L  I </second_frame>
            <third_frame>   K  *  K  V  Y  K  A  K  T  N  S  K  D  S  P  *  T  L  S  Q  C  Y  S  F  P  *  L  Y  K  I  L  V  E  K  I  F  K  Q  I  S  H  G  H  F  K  F  V  H  L  Y  Y  F  P  C  T  S  I  S  M  H  N  R  S  S  I  K  H  L  *  K  F  L  W  R  Y  P  N  S  V  S  F  W  H  *  *  W  L  W  K  S  I  L  S  T  H  S  C  M  H  W  W  S  A  S  T  Q  N  P  F  W  *  I  S  C  *  K  F  E  L  Y  G  S  T  Y  S  C  D  R  S  L  N  V  E  L  S  R  W  *  Q  F  S  T  Y  Q  A  V  *  P  R  Y  *  H  T  F  H  F  V  L  *  K  *  L  L  V  L  *   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02HBa0320D04.2" strand="+"/>
                <serials PGL_serial="1" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="6153" stop="6554"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>402</number_coding_nucleotides>
                  <number_encoded_amino_acids>134</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>RKSSSKSHMAISNLSIFIIFLVLQFLCITEAQSSICRNSCGDIPIQYPFGIDDGCGSPFYRHILVCTGGQLQLRTPSGRYPVRNLSYMDPHILVTDPLMWNCLDGDNFRPTRPFSLDTSTHFTLSSENDYLFFN</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="2" PGL_strand="+" PGL_start="8774" PGL_stop="9310"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="8774" e_stop="9310"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.993"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.993">
            <gDNA_exon_boundary e_start="8774" e_stop="9310" e_length="537"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="8774" stop="9310"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="TG353-R" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="8774" stop="9305"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="TG353-F" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="2" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>TTGAAGCATGAATAACATCGAGTAGTCCATCCGTTGCACGAGCAAGATAGCAATGATCAATCCAAACATTGGACGATGTAAACACACTTATAGCATCACCATCAGAGCCTGATCTTTCACCAACATGTTCAGGACTACTCCTAACCATACCCTTTTTACCAGGCTTACAATCATGAATACTAATCCCATGAATAATAACATTTGTGACATAGTCCAATGTGATACATGGACCATTAGAGATTTCCACTTTCGCTCCTCTGCCATCGATAGTCTTATAACTATTCACCATAAGTTCATTTTCAAGTGTAAGTACCATGTCCCTTTTGAAAATTATCCAAAGTGGCTCGGACTGAATTGCACCATACCTAAGTGTGCCTGGTTTAGGATTTATAGGGTCATCAGAAGAGTCATTCACAATATAAATGTCACCATATTTACCACCTATGGTACTACTTCCAAAGCCTATTGCACAATCCGCTAAAGCCTTCCGATTGGATGACCAATCGCCTTTCCATCTCCAACACGAGTCGATGACAT</gDNA_template>
            <first_frame> L  K  H  E  *  H  R  V  V  H  P  L  H  E  Q  D  S  N  D  Q  S  K  H  W  T  M  *  T  H  L  *  H  H  H  Q  S  L  I  F  H  Q  H  V  Q  D  Y  S  *  P  Y  P  F  Y  Q  A  Y  N  H  E  Y  *  S  H  E  *  *  H  L  *  H  S  P  M  *  Y  M  D  H  *  R  F  P  L  S  L  L  C  H  R  *  S  Y  N  Y  S  P  *  V  H  F  Q  V  *  V  P  C  P  F  *  K  L  S  K  V  A  R  T  E  L  H  H  T  *  V  C  L  V  *  D  L  *  G  H  Q  K  S  H  S  Q  Y  K  C  H  H  I  Y  H  L  W  Y  Y  F  Q  S  L  L  H  N  P  L  K  P  S  D  W  M  T  N  R  L  S  I  S  N  T  S  R  *  H </first_frame>
            <second_frame>  *  S  M  N  N  I  E  *  S  I  R  C  T  S  K  I  A  M  I  N  P  N  I  G  R  C  K  H  T  Y  S  I  T  I  R  A  *  S  F  T  N  M  F  R  T  T  P  N  H  T  L  F  T  R  L  T  I  M  N  T  N  P  M  N  N  N  I  C  D  I  V  Q  C  D  T  W  T  I  R  D  F  H  F  R  S  S  A  I  D  S  L  I  T  I  H  H  K  F  I  F  K  C  K  Y  H  V  P  F  E  N  Y  P  K  W  L  G  L  N  C  T  I  P  K  C  A  W  F  R  I  Y  R  V  I  R  R  V  I  H  N  I  N  V  T  I  F  T  T  Y  G  T  T  S  K  A  Y  C  T  I  R  *  S  L  P  I  G  *  P  I  A  F  P  S  P  T  R  V  D  D   </second_frame>
            <third_frame>   E  A  *  I  T  S  S  S  P  S  V  A  R  A  R  *  Q  *  S  I  Q  T  L  D  D  V  N  T  L  I  A  S  P  S  E  P  D  L  S  P  T  C  S  G  L  L  L  T  I  P  F  L  P  G  L  Q  S  *  I  L  I  P  *  I  I  T  F  V  T  *  S  N  V  I  H  G  P  L  E  I  S  T  F  A  P  L  P  S  I  V  L  *  L  F  T  I  S  S  F  S  S  V  S  T  M  S  L  L  K  I  I  Q  S  G  S  D  *  I  A  P  Y  L  S  V  P  G  L  G  F  I  G  S  S  E  E  S  F  T  I  *  M  S  P  Y  L  P  P  M  V  L  L  P  K  P  I  A  Q  S  A  K  A  F  R  L  D  D  Q  S  P  F  H  L  Q  H  E  S  M  T  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02HBa0320D04.2" strand="+"/>
                <serials PGL_serial="2" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="8886" stop="9254"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>366</number_coding_nucleotides>
                  <number_encoded_amino_acids>122</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>SFTNMFRTTPNHTLFTRLTIMNTNPMNNNICDIVQCDTWTIRDFHFRSSAIDSLITIHHKFIFKCKYHVPFENYPKWLGLNCTIPKCAWFRIYRVIRRVIHNINVTIFTTYGTTSKAYCTIR*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="3" PGL_strand="+" PGL_start="142098" PGL_stop="145265"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="142098" e_stop="142184"/>
            <exon e_start="142337" e_stop="142593"/>
            <exon e_start="143993" e_stop="144264"/>
            <exon e_start="144347" e_stop="144482"/>
            <exon e_start="144891" e_stop="145033"/>
            <exon e_start="145118" e_stop="145265"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.992" acc_prob="0.985" e_score="0.966"/>
          <exon-intron don_prob="0.996" acc_prob="0.809" e_score="1.000"/>
          <exon-intron don_prob="0.990" acc_prob="0.991" e_score="1.000"/>
          <exon-intron don_prob="0.559" acc_prob="0.986" e_score="0.993"/>
          <exon-intron don_prob="0.985" acc_prob="0.992" e_score="0.944"/>
          <exon-only e_score="0.973"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.966">
            <gDNA_exon_boundary e_start="142098" e_stop="142184" e_length="87"/>
          </exon>
          <intron i_serial="1" don_prob="0.992" acc_prob="0.985">
            <gDNA_intron_boundary i_start="142185" i_stop="142336" i_length="152"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="142337" e_stop="142593" e_length="257"/>
          </exon>
          <intron i_serial="2" don_prob="0.996" acc_prob="0.809">
            <gDNA_intron_boundary i_start="142594" i_stop="143992" i_length="1399"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="143993" e_stop="144264" e_length="272"/>
          </exon>
          <intron i_serial="3" don_prob="0.990" acc_prob="0.991">
            <gDNA_intron_boundary i_start="144265" i_stop="144346" i_length="82"/>
          </intron>
          <exon e_serial="4" e_score="0.993">
            <gDNA_exon_boundary e_start="144347" e_stop="144482" e_length="136"/>
          </exon>
          <intron i_serial="4" don_prob="0.559" acc_prob="0.986">
            <gDNA_intron_boundary i_start="144483" i_stop="144890" i_length="408"/>
          </intron>
          <exon e_serial="5" e_score="0.944">
            <gDNA_exon_boundary e_start="144891" e_stop="145033" e_length="143"/>
          </exon>
          <intron i_serial="5" don_prob="0.985" acc_prob="0.992">
            <gDNA_intron_boundary i_start="145034" i_stop="145117" i_length="84"/>
          </intron>
          <exon e_serial="6" e_score="0.973">
            <gDNA_exon_boundary e_start="145118" e_stop="145265" e_length="148"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="142098" stop="142184"/>
              <exon start="142337" stop="142593"/>
              <exon start="143993" stop="144264"/>
              <exon start="144347" stop="144482"/>
              <exon start="144891" stop="144953"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="cTOA-28-F21" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="143993" stop="144264"/>
              <exon start="144347" stop="144482"/>
              <exon start="144891" stop="145033"/>
              <exon start="145118" stop="145265"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="C2_At4g22130" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="3" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>CACTTGTATTTTGCTTCCGGAGGGGCAAGGGCAAGGAAATTGCTACAAGACCCTCTACAGGAAGTCTTCCAGTTGGCACAGATAAAG : TGAATATGGAGGTACAAGAGCAAAGGGCGAAGCCTGTGGTTGCTGTTGCTGACTTGAAGCCCCCACCTACCGAAAAGGTGACTGTTGAAATGATACAAGGAAAGAATGGATCTGTCAGGAGAGTGAAGTCTCCAATAACTGCATCTGCTTATACTGTTGCTGCATTGCAAACAGCAACAAACAGCTTCAGTCAAGAAAATCTCATTGGTGAAGGATCTCTTGGGCGTGTTTATAGGGCAGAGTTTCCTAATGGGAAG : ATAATGGTCATAAAAAAGATCGACAGTGCAGCACTGTCGCTGCAGGAGGAAGATAACTTTCTCGAAGCTGTCTCAAATATGTCAAGGCTGAGACACCCAAACATTGTTCAATTGATAGGATATTGTGCTGAGCATGGACAGCGTCTTCTGGTTTATGACCATGTTGCAAATGGTAGCTTGCATGATATGCTGCACTTTGCTGATGAGAGGAGCGAATTGCTTACTTGGAATGCCCGGGTTAGAGTAGCACTTGGCACTGCTCGAGCTTTAGA : GTACTTGCATGAAGTCTGTCTACCTTCTGTTGTACATAGAAACTTCAAATCCGCAAATATTTTACTAGATGAAGAGCTCAATCCCCATTTATCAGATTGTGGGTTAGCAGCTTTGACTCCCAACACAGAACGCCAG : GTGTCATCTACACAGATGATTGGTTCATTCGGCTATAGCGCTCCTGAATTTGCTTTATCTGGAATATACACTGTAAAAAGTGACGTATATAGTTTTGGTGTGGTAATGTTGGAGTTGTTAACAGGAAGGAAGCCACTTGATAG : TTCAAGGGTGAGATCAGAGCAGTCCCTTGTGAGATGGGCTACGCCTCAACTCCATGATATAGATGCCTTGTCAAAAATGGTTGATCCTGCACTAAATGGCATGTATCCTGCAAAGTCTTTGTCCCGTTTCGCTGATATTATTGCACTC</gDNA_template>
            <first_frame> H  L  Y  F  A  S  G  G  A  R  A  R  K  L  L  Q  D  P  L  Q  E  V  F  Q  L  A  Q  I  K  :  *  I  W  R  Y  K  S  K  G  R  S  L  W  L  L  L  L  T  *  S  P  H  L  P  K  R  *  L  L  K  *  Y  K  E  R  M  D  L  S  G  E  *  S  L  Q  *  L  H  L  L  I  L  L  L  H  C  K  Q  Q  Q  T  A  S  V  K  K  I  S  L  V  K  D  L  L  G  V  F  I  G  Q  S  F  L  M  G  R :   *  W  S  *  K  R  S  T  V  Q  H  C  R  C  R  R  K  I  T  F  S  K  L  S  Q  I  C  Q  G  *  D  T  Q  T  L  F  N  *  *  D  I  V  L  S  M  D  S  V  F  W  F  M  T  M  L  Q  M  V  A  C  M  I  C  C  T  L  L  M  R  G  A  N  C  L  L  G  M  P  G  L  E  *  H  L  A  L  L  E  L  *   : S  T  C  M  K  S  V  Y  L  L  L  Y  I  E  T  S  N  P  Q  I  F  Y  *  M  K  S  S  I  P  I  Y  Q  I  V  G  *  Q  L  *  L  P  T  Q  N  A  R :   C  H  L  H  R  *  L  V  H  S  A  I  A  L  L  N  L  L  Y  L  E  Y  T  L  *  K  V  T  Y  I  V  L  V  W  *  C  W  S  C  *  Q  E  G  S  H  L  I   : V  Q  G  *  D  Q  S  S  P  L  *  D  G  L  R  L  N  S  M  I  *  M  P  C  Q  K  W  L  I  L  H  *  M  A  C  I  L  Q  S  L  C  P  V  S  L  I  L  L  H   </first_frame>
            <second_frame>  T  C  I  L  L  P  E  G  Q  G  Q  G  N  C  Y  K  T  L  Y  R  K  S  S  S  W  H  R  *  S :   E  Y  G  G  T  R  A  K  G  E  A  C  G  C  C  C  *  L  E  A  P  T  Y  R  K  G  D  C  *  N  D  T  R  K  E  W  I  C  Q  E  S  E  V  S  N  N  C  I  C  L  Y  C  C  C  I  A  N  S  N  K  Q  L  Q  S  R  K  S  H  W  *  R  I  S  W  A  C  L  *  G  R  V  S  *  W  E   : D  N  G  H  K  K  D  R  Q  C  S  T  V  A  A  G  G  R  *  L  S  R  S  C  L  K  Y  V  K  A  E  T  P  K  H  C  S  I  D  R  I  L  C  *  A  W  T  A  S  S  G  L  *  P  C  C  K  W  *  L  A  *  Y  A  A  L  C  *  *  E  E  R  I  A  Y  L  E  C  P  G  *  S  S  T  W  H  C  S  S  F  R  :  V  L  A  *  S  L  S  T  F  C  C  T  *  K  L  Q  I  R  K  Y  F  T  R  *  R  A  Q  S  P  F  I  R  L  W  V  S  S  F  D  S  Q  H  R  T  P   : G  V  I  Y  T  D  D  W  F  I  R  L  *  R  S  *  I  C  F  I  W  N  I  H  C  K  K  *  R  I  *  F  W  C  G  N  V  G  V  V  N  R  K  E  A  T  *  *  :  F  K  G  E  I  R  A  V  P  C  E  M  G  Y  A  S  T  P  *  Y  R  C  L  V  K  N  G  *  S  C  T  K  W  H  V  S  C  K  V  F  V  P  F  R  *  Y  Y  C  T  </second_frame>
            <third_frame>   L  V  F  C  F  R  R  G  K  G  K  E  I  A  T  R  P  S  T  G  S  L  P  V  G  T  D  K   : V  N  M  E  V  Q  E  Q  R  A  K  P  V  V  A  V  A  D  L  K  P  P  P  T  E  K  V  T  V  E  M  I  Q  G  K  N  G  S  V  R  R  V  K  S  P  I  T  A  S  A  Y  T  V  A  A  L  Q  T  A  T  N  S  F  S  Q  E  N  L  I  G  E  G  S  L  G  R  V  Y  R  A  E  F  P  N  G  K  :  I  M  V  I  K  K  I  D  S  A  A  L  S  L  Q  E  E  D  N  F  L  E  A  V  S  N  M  S  R  L  R  H  P  N  I  V  Q  L  I  G  Y  C  A  E  H  G  Q  R  L  L  V  Y  D  H  V  A  N  G  S  L  H  D  M  L  H  F  A  D  E  R  S  E  L  L  T  W  N  A  R  V  R  V  A  L  G  T  A  R  A  L  E :   Y  L  H  E  V  C  L  P  S  V  V  H  R  N  F  K  S  A  N  I  L  L  D  E  E  L  N  P  H  L  S  D  C  G  L  A  A  L  T  P  N  T  E  R  Q  :  V  S  S  T  Q  M  I  G  S  F  G  Y  S  A  P  E  F  A  L  S  G  I  Y  T  V  K  S  D  V  Y  S  F  G  V  V  M  L  E  L  L  T  G  R  K  P  L  D  S :   S  R  V  R  S  E  Q  S  L  V  R  W  A  T  P  Q  L  H  D  I  D  A  L  S  K  M  V  D  P  A  L  N  G  M  Y  P  A  K  S  L  S  R  F  A  D  I  I  A  L </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02HBa0320D04.2" strand="+"/>
                <serials PGL_serial="3" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="142100" stop="142184"/>
                    <exon start="142337" stop="142593"/>
                    <exon start="143993" stop="144264"/>
                    <exon start="144347" stop="144482"/>
                    <exon start="144891" stop="145033"/>
                    <exon start="145118" stop="145265"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>1041</number_coding_nucleotides>
                  <number_encoded_amino_acids>347</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>LVFCFRRGKGKEIATRPSTGSLPVGTDKVNMEVQEQRAKPVVAVADLKPPPTEKVTVEMIQGKNGSVRRVKSPITASAYTVAALQTATNSFSQENLIGEGSLGRVYRAEFPNGKIMVIKKIDSAALSLQEEDNFLEAVSNMSRLRHPNIVQLIGYCAEHGQRLLVYDHVANGSLHDMLHFADERSELLTWNARVRVALGTARALEYLHEVCLPSVVHRNFKSANILLDEELNPHLSDCGLAALTPNTERQVSSTQMIGSFGYSAPEFALSGIYTVKSDVYSFGVVMLELLTGRKPLDSSRVRSEQSLVRWATPQLHDIDALSKMVDPALNGMYPAKSLSRFADIIAL</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
  </PGL_module>
</GTH_output>
<!--
$ general statistics:
$ 14 chains have been computed
$ 
$ memory statistics:
$ 9144 bytes spliced alignments in total
$ 5 spliced alignments have been stored
$ 1828 bytes was the average size of a spliced alignment
$ 8040 bytes predicted gene locations in total
$ 3 predicted gene locations have been stored
$ 2680 bytes was the average size of a predicted gene location
$ 0 megabytes was the average size of the backtrace matrix
$ 14 backtrace matrices have been allocated
$ 
$ date finished: 2009-12-01 10:31:14
-->
