<?xml version="1.0" encoding="ISO-8859-1"?>
<GTH_output xmlns="http://www.genomethreader.org/GTH_output/" GTH_XML_version="1.1">
  <header xmlns="http://www.genomethreader.org/GTH_output/header/">
    <source program="GenomeThreader" version="0.9.54" build_date="2006-07-28 11:55:15" run_date="2009-12-01 10:22:30"/>
    <gDNA_template_files>
      <temp_name>/tmp/bac-submission-temp-C02HBa0320M09-0CleD/GenomeThreader_SGN_E_tomato/un_xed_seqs</temp_name>
    </gDNA_template_files>
    <reference_files>
      <file ref_name="/tmp/bac-submission-temp-C02HBa0320M09-0CleD/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" type="ESTcDNA"/>
    </reference_files>
    <splice_site_parameters parameter_type="Bayesian" species="arabidopsis"/>
    <parameters>
      <parameter name="bssmfile" value="arabidopsis"/>
      <parameter name="scorematrixfile" value="BLOSUM62"/>
      <parameter name="searchmode" value="forward=True,reverse=True)"/>
      <parameter name="translationtable" value="1"/>
      <parameter name="frompos" value="0"/>
      <parameter name="topos" value="0"/>
      <parameter name="width" value="0"/>
      <parameter name="verbose" value="False"/>
      <parameter name="skipalignmentout" value="False"/>
      <parameter name="showintronmaxlen" value="120"/>
      <parameter name="minorflen" value="64"/>
      <parameter name="showseqnums" value="False"/>
      <parameter name="gs2out" value="False"/>
      <parameter name="maskpolyatails" value="False"/>
      <parameter name="noautoindex" value="False"/>
      <parameter name="minmatchlen" value="20"/>
      <parameter name="seedlength" value="16"/>
      <parameter name="exdrop" value="2"/>
      <parameter name="online" value="False"/>
      <parameter name="inverse" value="False"/>
      <parameter name="exact" value="False"/>
      <parameter name="chainwf" value="0.500000"/>
      <parameter name="gcmaxgapwidth" value="1000000"/>
      <parameter name="gcmincoverage" value="50"/>
      <parameter name="introncutout" value="False"/>
      <parameter name="autointroncutout" value="0"/>
      <parameter name="icinitialdelta" value="50"/>
      <parameter name="iciterations" value="2"/>
      <parameter name="icdeltaincrease" value="50"/>
      <parameter name="icminremintronlen" value="10"/>
      <parameter name="nou12intronmodel" value="False"/>
      <parameter name="u12donorprob" value="0.990000"/>
      <parameter name="u12donorprob1mism" value="0.900000"/>
      <parameter name="probies" value="0.500000"/>
      <parameter name="probdelgen" value="0.030000"/>
      <parameter name="identityweight" value="2.000000"/>
      <parameter name="mismatchweight" value="-2.000000"/>
      <parameter name="undetcharweight" value="0.000000"/>
      <parameter name="deletionweight" value="-4.000000"/>
      <parameter name="dpminexonlen" value="5"/>
      <parameter name="dpminintronlen" value="50"/>
      <parameter name="shortexonpenal" value="100"/>
      <parameter name="shortintronpenal" value="100"/>
      <parameter name="wzerotransition" value="80"/>
      <parameter name="wdecreasedoutput" value="80"/>
      <parameter name="leadcutoffsmode" value="RELAXED"/>
      <parameter name="termcutoffsmode" value="STRICT"/>
      <parameter name="cutoffsminexonlen" value="5"/>
      <parameter name="scoreminexonlen" value="50"/>
      <parameter name="minaveragessp" value="0.500000"/>
      <parameter name="minalignmentscore" value="0.900000"/>
      <parameter name="maxalignmentscore" value="1.000000"/>
      <parameter name="mincoverage" value="0.900000"/>
      <parameter name="maxcoverage" value="100.000000"/>
      <parameter name="intermediate" value="False"/>
      <parameter name="sortags" value="False"/>
      <parameter name="sortagswf" value="1.000000"/>
      <parameter name="first" value="0"/>
      <parameter name="exondistri" value="False"/>
      <parameter name="introndistri" value="False"/>
      <parameter name="refseqcovdistri" value="False"/>
    </parameters>
    <overall_reference_type>ESTcDNA</overall_reference_type>
  </header>
  <alignment_module>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0320M09-0CleD/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E702262" ref_strand="+" ref_description="SGN-E702262 [FA18BA01]">
      <seq>caggcattttacagttataacctttctaacagaatctcagtcaccccaacaccctcctccgtcccaaaccttcggtgacatctgaagtcgccaccgcctaccgcccgccgtaccacatgcttcggaacctccgaacgcggcggcgtccgctttacggcgcgcacatttgcgccttagcggcagcgattctcctcctcctctctgtttcactcctctacagtcgcctcaacttcttcctccaacctaacaatccccatccgcatcccctccaatacgacaccatttcactgaacaaccctctcgtcgacgatttagctgacgctgattaccgctcctcagatgaccgcattgacgagctcgacgttgctgacagtaacaacaataacgatgatgagttcctcttatccaatgaatccgaagaggacgatgaagaaatcatcaatcaataccctagggtttcgtcgacatatttctacgatcagaggcacggagttgtacggagagcgtttaacaaacgatcaattgaggaatgggaagattacgttaattttgaatcgaggatgaagttaggattagggtttaagagtgatgaatctaaggccgcgtttggatcggatgatcttccagtggatgtgcaaatgaggatgaagttgagcgaaattgagagtgttgaagatgctttgttactaaaaggatcacctttgagggaagggtggggtgagtggtttgaaaagaagagtgattttttgaggcgtgacagaatgttcaagtccaatct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0320M09-0CleD/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0320M09.4" temp_strand="+" temp_description="C02HBa0320M09.4  AC215438.3 htgs_phase:3 submitted_to_sgn_as:C02HBa0320M09 sequenced_by:kribb upload_account_name:korea">
        <position start="9762" stop="11137"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="10060" g_stop="10837" g_length="778"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="778" r_length="778" r_score="0.995"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0320M09.4" gen_strand="+" ref_id="SGN-E702262" ref_strand="+">
        <total_alignment_score>0.995</total_alignment_score>
        <cumulative_length_of_scored_exons>778</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0320M09.4" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E702262" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="10060" e_stop="10837"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTGTCATTTTACAGTTATAACCTTTCTAACAGAATCTCAGTCACCCCAACACCCTCCTCCGTCCCAAACCTTCGGTGACATCTGAAGTCGCCACCGCCTACCGCCCGCCGTACCACATGCTTCGGAACCTCCGAACGCGGCGGCGTCCGCTTTACGGCGCGCACATTTGCGCCTTAGCGGCAGCGATTCTCCTCCTCCTCTCTGTTTCACTCCTCTACAGTCGCCTCAACTTCTTCCTCCAACCTAACAATCCCCATCCGCATCCCCTCCAATACGACACCATTTCACTGAACAACCCTCTCGTCGACGATTTAGCTGACGCTGATTACCGCTCCTCAGATGACCGCATTGACGAGCTCGACGTTGCTGACAGTAACAACAATAACGATGATGAGTTCCTCTTATCCAATGAATCCGAAGAGGACGATGAAGAAATCATCAATCAATACCCTAGGGTTTCGTCGACATATTTCTACGATCAGAGGCACGGAGTTGTACGGAGAGCGTTTAACAAACGATCAATTGAGGAATGGGAAGATTACGTTAATTTTGAATCGAGGATGAAGTTAGGATTAGGGTTTAAGAGTGATGAATCTAAGGCCGCGTTTGGATCGGATGATCTTCCAGTGGATGTGCAAATGAGGATGAAGTTGAGCGAAATTGAGAGTGTTGAAGATGCTTTGTTACTAAAAGGATCACCTTTGAGGGAAGGGTGGGGTGAGTGGTTTGAAAAGAAGAGTGATTTTTTGAGGCGTGACAGAATGTTCAAGTCAAATCT</genome_strand>
        <mrna_strand>CAGGCATTTTACAGTTATAACCTTTCTAACAGAATCTCAGTCACCCCAACACCCTCCTCCGTCCCAAACCTTCGGTGACATCTGAAGTCGCCACCGCCTACCGCCCGCCGTACCACATGCTTCGGAACCTCCGAACGCGGCGGCGTCCGCTTTACGGCGCGCACATTTGCGCCTTAGCGGCAGCGATTCTCCTCCTCCTCTCTGTTTCACTCCTCTACAGTCGCCTCAACTTCTTCCTCCAACCTAACAATCCCCATCCGCATCCCCTCCAATACGACACCATTTCACTGAACAACCCTCTCGTCGACGATTTAGCTGACGCTGATTACCGCTCCTCAGATGACCGCATTGACGAGCTCGACGTTGCTGACAGTAACAACAATAACGATGATGAGTTCCTCTTATCCAATGAATCCGAAGAGGACGATGAAGAAATCATCAATCAATACCCTAGGGTTTCGTCGACATATTTCTACGATCAGAGGCACGGAGTTGTACGGAGAGCGTTTAACAAACGATCAATTGAGGAATGGGAAGATTACGTTAATTTTGAATCGAGGATGAAGTTAGGATTAGGGTTTAAGAGTGATGAATCTAAGGCCGCGTTTGGATCGGATGATCTTCCAGTGGATGTGCAAATGAGGATGAAGTTGAGCGAAATTGAGAGTGTTGAAGATGCTTTGTTACTAAAAGGATCACCTTTGAGGGAAGGGTGGGGTGAGTGGTTTGAAAAGAAGAGTGATTTTTTGAGGCGTGACAGAATGTTCAAGTCCAATCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0320M09-0CleD/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E727031" ref_strand="+" ref_description="SGN-E727031 [LA13CB05]">
      <seq>tatcctttctaacagaatctcagtcaccccaacaccctcctccgtcccaaaccttcggtgacatctgaagtcgccaccgcctaccgcccgccgtaccacatgcttcggaacctccgaacgcggcggcgtccgctttacggcgcgcacatttgcgccttagcggcagcgattctcctcctcctctctgtttcactcctctacagtcgcctcaacttcttcctccaacctaacaatccccatccgcatcccctccaatacgacaccatttcactgaacaaccctctcgtcgacgatttagctgacgctgattaccgctcctcagatgaccgcattgacgagctcgacgttgctgacagtaacaacaataacgatgatgagttcctcttatccaatgaatccgaagaggacgatgaagaaatcatcaatcaataccctagggtttcgtcgacatatttctacgatcagaggcacggagttgtacggagagcgtttaacaaacgatcaattgaggaatgggaagattacgttaattttgaatcgaggatgaagttaggattagggtttaagagtgatgaatctaaggccgcgtttggatcggatgatcttccagtggatgtgcaaatgaggatgaagttgagcgaaattgagagtgttgaagatgctttgttactacaaggatcacctttgagggaagggtggggtgagtggtttgaaaagaagagtgattttttgaggcgtgacagaatgttcaagtcaaatctggaggcggtaaat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0320M09-0CleD/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0320M09.4" temp_strand="+" temp_description="C02HBa0320M09.4  AC215438.3 htgs_phase:3 submitted_to_sgn_as:C02HBa0320M09 sequenced_by:kribb upload_account_name:korea">
        <position start="9777" stop="11150"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="10077" g_stop="10850" g_length="774"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="774" r_length="774" r_score="0.996"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0320M09.4" gen_strand="+" ref_id="SGN-E727031" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>774</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0320M09.4" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E727031" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="10077" e_stop="10850"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TAACCTTTCTAACAGAATCTCAGTCACCCCAACACCCTCCTCCGTCCCAAACCTTCGGTGACATCTGAAGTCGCCACCGCCTACCGCCCGCCGTACCACATGCTTCGGAACCTCCGAACGCGGCGGCGTCCGCTTTACGGCGCGCACATTTGCGCCTTAGCGGCAGCGATTCTCCTCCTCCTCTCTGTTTCACTCCTCTACAGTCGCCTCAACTTCTTCCTCCAACCTAACAATCCCCATCCGCATCCCCTCCAATACGACACCATTTCACTGAACAACCCTCTCGTCGACGATTTAGCTGACGCTGATTACCGCTCCTCAGATGACCGCATTGACGAGCTCGACGTTGCTGACAGTAACAACAATAACGATGATGAGTTCCTCTTATCCAATGAATCCGAAGAGGACGATGAAGAAATCATCAATCAATACCCTAGGGTTTCGTCGACATATTTCTACGATCAGAGGCACGGAGTTGTACGGAGAGCGTTTAACAAACGATCAATTGAGGAATGGGAAGATTACGTTAATTTTGAATCGAGGATGAAGTTAGGATTAGGGTTTAAGAGTGATGAATCTAAGGCCGCGTTTGGATCGGATGATCTTCCAGTGGATGTGCAAATGAGGATGAAGTTGAGCGAAATTGAGAGTGTTGAAGATGCTTTGTTACTAAAAGGATCACCTTTGAGGGAAGGGTGGGGTGAGTGGTTTGAAAAGAAGAGTGATTTTTTGAGGCGTGACAGAATGTTCAAGTCAAATCTGGAGGCGTTAAAT</genome_strand>
        <mrna_strand>TATCCTTTCTAACAGAATCTCAGTCACCCCAACACCCTCCTCCGTCCCAAACCTTCGGTGACATCTGAAGTCGCCACCGCCTACCGCCCGCCGTACCACATGCTTCGGAACCTCCGAACGCGGCGGCGTCCGCTTTACGGCGCGCACATTTGCGCCTTAGCGGCAGCGATTCTCCTCCTCCTCTCTGTTTCACTCCTCTACAGTCGCCTCAACTTCTTCCTCCAACCTAACAATCCCCATCCGCATCCCCTCCAATACGACACCATTTCACTGAACAACCCTCTCGTCGACGATTTAGCTGACGCTGATTACCGCTCCTCAGATGACCGCATTGACGAGCTCGACGTTGCTGACAGTAACAACAATAACGATGATGAGTTCCTCTTATCCAATGAATCCGAAGAGGACGATGAAGAAATCATCAATCAATACCCTAGGGTTTCGTCGACATATTTCTACGATCAGAGGCACGGAGTTGTACGGAGAGCGTTTAACAAACGATCAATTGAGGAATGGGAAGATTACGTTAATTTTGAATCGAGGATGAAGTTAGGATTAGGGTTTAAGAGTGATGAATCTAAGGCCGCGTTTGGATCGGATGATCTTCCAGTGGATGTGCAAATGAGGATGAAGTTGAGCGAAATTGAGAGTGTTGAAGATGCTTTGTTACTACAAGGATCACCTTTGAGGGAAGGGTGGGGTGAGTGGTTTGAAAAGAAGAGTGATTTTTTGAGGCGTGACAGAATGTTCAAGTCAAATCTGGAGGCGGTAAAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0320M09-0CleD/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E335456" ref_strand="+" ref_description="SGN-E335456 [cTOE-2-P24]">
      <seq>cagaatctcagtcaccccaacaccctcctccgtcccaaaccttcggtgacatctgaagtcgccaccgcctaccgcccgccgtaccacatgcttcggaacctccgaacgcggcggcgtccgctttacggcgcgcacatttgcgccttagcggcagcgattctcctcctcctctctgtttcactcctctacagacgcctcaacttcttcctccaacctaacaatccccatccgcatcccctccaatacgacaccatttcactgaacaaccctctcgtcgacgatttagctgacgctgattaccgctcctcagatgaccgcattgacgagctcgacgttgctgacagtaacaacaataacgatgatgagttcctcttatccaatgaatccgaagaggacgatgaagaaatcatcaatcaatacc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0320M09-0CleD/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0320M09.4" temp_strand="+" temp_description="C02HBa0320M09.4  AC215438.3 htgs_phase:3 submitted_to_sgn_as:C02HBa0320M09 sequenced_by:kribb upload_account_name:korea">
        <position start="9789" stop="10809"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="10089" g_stop="10509" g_length="421"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="421" r_length="421" r_score="0.998"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0320M09.4" gen_strand="+" ref_id="SGN-E335456" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>421</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0320M09.4" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E335456" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="10089" e_stop="10509"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAGAATCTCAGTCACCCCAACACCCTCCTCCGTCCCAAACCTTCGGTGACATCTGAAGTCGCCACCGCCTACCGCCCGCCGTACCACATGCTTCGGAACCTCCGAACGCGGCGGCGTCCGCTTTACGGCGCGCACATTTGCGCCTTAGCGGCAGCGATTCTCCTCCTCCTCTCTGTTTCACTCCTCTACAGTCGCCTCAACTTCTTCCTCCAACCTAACAATCCCCATCCGCATCCCCTCCAATACGACACCATTTCACTGAACAACCCTCTCGTCGACGATTTAGCTGACGCTGATTACCGCTCCTCAGATGACCGCATTGACGAGCTCGACGTTGCTGACAGTAACAACAATAACGATGATGAGTTCCTCTTATCCAATGAATCCGAAGAGGACGATGAAGAAATCATCAATCAATACC</genome_strand>
        <mrna_strand>CAGAATCTCAGTCACCCCAACACCCTCCTCCGTCCCAAACCTTCGGTGACATCTGAAGTCGCCACCGCCTACCGCCCGCCGTACCACATGCTTCGGAACCTCCGAACGCGGCGGCGTCCGCTTTACGGCGCGCACATTTGCGCCTTAGCGGCAGCGATTCTCCTCCTCCTCTCTGTTTCACTCCTCTACAGACGCCTCAACTTCTTCCTCCAACCTAACAATCCCCATCCGCATCCCCTCCAATACGACACCATTTCACTGAACAACCCTCTCGTCGACGATTTAGCTGACGCTGATTACCGCTCCTCAGATGACCGCATTGACGAGCTCGACGTTGCTGACAGTAACAACAATAACGATGATGAGTTCCTCTTATCCAATGAATCCGAAGAGGACGATGAAGAAATCATCAATCAATACC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0320M09-0CleD/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E340188" ref_strand="+" ref_description="SGN-E340188 [cTOF-2-E24]">
      <seq>cctcctccgtcccaaaccttcggtgacatctgaagtcgccaccgcctaccgcccgccgtaccacatgcttcggaacctccgaacgcggcggcgtccgctttacggcgcgcacatttgcgccttagcggcagcgattctcctcctcctctctgtttcactcctctacagtcgcctcaacttcttcctccaacctaacaatccccatccgcatcccctccaatacgacaccatttcactgaacaaccctctcgtcgacgatttagctgacgctgattaccgctcctcagatgaccgcattgacgagctcgacgttgctgacagtaacaacaataacgatgatgagttcctcttatccaatgaatccgaagaggacgatgaagaaatcatcaatcaataccctagggtttcgtcgacatatttctacgatcagaggcacggagttgtacggagagcgtttaacaaacgatcaattgaggaatgggaagattacgttaattttgaatcgaggatgaagttaggattagggtttaagagtgatgaatctaaggccgcgtttggatcggatgatcttccagtggatgtgcaaatgaggatgaagttgagcgaaattgagagtgttgaagatgctttgttactaaaaggatcacctttgagggaagggtggggtgagtggtttgaaaagaagagtgattttttgaggcgtgacagaatgttcaagtcaaatc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0320M09-0CleD/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0320M09.4" temp_strand="+" temp_description="C02HBa0320M09.4  AC215438.3 htgs_phase:3 submitted_to_sgn_as:C02HBa0320M09 sequenced_by:kribb upload_account_name:korea">
        <position start="9812" stop="11136"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="10112" g_stop="10836" g_length="725"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="725" r_length="725" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0320M09.4" gen_strand="+" ref_id="SGN-E340188" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>725</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0320M09.4" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E340188" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="10112" e_stop="10836"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCTCCTCCGTCCCAAACCTTCGGTGACATCTGAAGTCGCCACCGCCTACCGCCCGCCGTACCACATGCTTCGGAACCTCCGAACGCGGCGGCGTCCGCTTTACGGCGCGCACATTTGCGCCTTAGCGGCAGCGATTCTCCTCCTCCTCTCTGTTTCACTCCTCTACAGTCGCCTCAACTTCTTCCTCCAACCTAACAATCCCCATCCGCATCCCCTCCAATACGACACCATTTCACTGAACAACCCTCTCGTCGACGATTTAGCTGACGCTGATTACCGCTCCTCAGATGACCGCATTGACGAGCTCGACGTTGCTGACAGTAACAACAATAACGATGATGAGTTCCTCTTATCCAATGAATCCGAAGAGGACGATGAAGAAATCATCAATCAATACCCTAGGGTTTCGTCGACATATTTCTACGATCAGAGGCACGGAGTTGTACGGAGAGCGTTTAACAAACGATCAATTGAGGAATGGGAAGATTACGTTAATTTTGAATCGAGGATGAAGTTAGGATTAGGGTTTAAGAGTGATGAATCTAAGGCCGCGTTTGGATCGGATGATCTTCCAGTGGATGTGCAAATGAGGATGAAGTTGAGCGAAATTGAGAGTGTTGAAGATGCTTTGTTACTAAAAGGATCACCTTTGAGGGAAGGGTGGGGTGAGTGGTTTGAAAAGAAGAGTGATTTTTTGAGGCGTGACAGAATGTTCAAGTCAAATC</genome_strand>
        <mrna_strand>CCTCCTCCGTCCCAAACCTTCGGTGACATCTGAAGTCGCCACCGCCTACCGCCCGCCGTACCACATGCTTCGGAACCTCCGAACGCGGCGGCGTCCGCTTTACGGCGCGCACATTTGCGCCTTAGCGGCAGCGATTCTCCTCCTCCTCTCTGTTTCACTCCTCTACAGTCGCCTCAACTTCTTCCTCCAACCTAACAATCCCCATCCGCATCCCCTCCAATACGACACCATTTCACTGAACAACCCTCTCGTCGACGATTTAGCTGACGCTGATTACCGCTCCTCAGATGACCGCATTGACGAGCTCGACGTTGCTGACAGTAACAACAATAACGATGATGAGTTCCTCTTATCCAATGAATCCGAAGAGGACGATGAAGAAATCATCAATCAATACCCTAGGGTTTCGTCGACATATTTCTACGATCAGAGGCACGGAGTTGTACGGAGAGCGTTTAACAAACGATCAATTGAGGAATGGGAAGATTACGTTAATTTTGAATCGAGGATGAAGTTAGGATTAGGGTTTAAGAGTGATGAATCTAAGGCCGCGTTTGGATCGGATGATCTTCCAGTGGATGTGCAAATGAGGATGAAGTTGAGCGAAATTGAGAGTGTTGAAGATGCTTTGTTACTAAAAGGATCACCTTTGAGGGAAGGGTGGGGTGAGTGGTTTGAAAAGAAGAGTGATTTTTTGAGGCGTGACAGAATGTTCAAGTCAAATC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0320M09-0CleD/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E212184" ref_strand="+" ref_description="SGN-E212184 [cLEC-75-P20]">
      <seq>aaccttcggtgacatctgaagtcgccaccgcctaccgcccgccgtaccacatgcttcggaacctccgaacgcggcggcgtccgctttacggcgcgcacatttgcgccttagcggcagcgattctcctcctcctctctgtttcactcctctacagtcgcctcaacttcttcctccaacctaacaatccccatccgcatcccctccaatacgacaccatttcactgaacaaccctctcgtcgacgatttagctgacgctgattaccgctcctcagatgaccgcattgacgagctcgacgttgctgacagtaacaacaataacgatgatgagttcctcttatccaatgaatccgaagaggacgatgaagaaatcatcaatcaataccctagggtttcgtcgacatatttctacgatcagaggcacggagttgtacggagagcgtttaacaaacgatcaattgaggaatgggaagattacgttaattttgaatcgaggatgaagttaggattagggtttaagagtgatgaatctaaggccgcgtttggatcggatgatcttccagtggatgtgcaaatgaggatgaagttgagcgaaattgagagtgttgaagatgctttgttactaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0320M09-0CleD/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0320M09.4" temp_strand="+" temp_description="C02HBa0320M09.4  AC215438.3 htgs_phase:3 submitted_to_sgn_as:C02HBa0320M09 sequenced_by:kribb upload_account_name:korea">
        <position start="9826" stop="11049"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="10126" g_stop="10749" g_length="624"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="624" r_length="624" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0320M09.4" gen_strand="+" ref_id="SGN-E212184" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>624</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0320M09.4" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E212184" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="10126" e_stop="10749"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AACCTTCGGTGACATCTGAAGTCGCCACCGCCTACCGCCCGCCGTACCACATGCTTCGGAACCTCCGAACGCGGCGGCGTCCGCTTTACGGCGCGCACATTTGCGCCTTAGCGGCAGCGATTCTCCTCCTCCTCTCTGTTTCACTCCTCTACAGTCGCCTCAACTTCTTCCTCCAACCTAACAATCCCCATCCGCATCCCCTCCAATACGACACCATTTCACTGAACAACCCTCTCGTCGACGATTTAGCTGACGCTGATTACCGCTCCTCAGATGACCGCATTGACGAGCTCGACGTTGCTGACAGTAACAACAATAACGATGATGAGTTCCTCTTATCCAATGAATCCGAAGAGGACGATGAAGAAATCATCAATCAATACCCTAGGGTTTCGTCGACATATTTCTACGATCAGAGGCACGGAGTTGTACGGAGAGCGTTTAACAAACGATCAATTGAGGAATGGGAAGATTACGTTAATTTTGAATCGAGGATGAAGTTAGGATTAGGGTTTAAGAGTGATGAATCTAAGGCCGCGTTTGGATCGGATGATCTTCCAGTGGATGTGCAAATGAGGATGAAGTTGAGCGAAATTGAGAGTGTTGAAGATGCTTTGTTACTAA</genome_strand>
        <mrna_strand>AACCTTCGGTGACATCTGAAGTCGCCACCGCCTACCGCCCGCCGTACCACATGCTTCGGAACCTCCGAACGCGGCGGCGTCCGCTTTACGGCGCGCACATTTGCGCCTTAGCGGCAGCGATTCTCCTCCTCCTCTCTGTTTCACTCCTCTACAGTCGCCTCAACTTCTTCCTCCAACCTAACAATCCCCATCCGCATCCCCTCCAATACGACACCATTTCACTGAACAACCCTCTCGTCGACGATTTAGCTGACGCTGATTACCGCTCCTCAGATGACCGCATTGACGAGCTCGACGTTGCTGACAGTAACAACAATAACGATGATGAGTTCCTCTTATCCAATGAATCCGAAGAGGACGATGAAGAAATCATCAATCAATACCCTAGGGTTTCGTCGACATATTTCTACGATCAGAGGCACGGAGTTGTACGGAGAGCGTTTAACAAACGATCAATTGAGGAATGGGAAGATTACGTTAATTTTGAATCGAGGATGAAGTTAGGATTAGGGTTTAAGAGTGATGAATCTAAGGCCGCGTTTGGATCGGATGATCTTCCAGTGGATGTGCAAATGAGGATGAAGTTGAGCGAAATTGAGAGTGTTGAAGATGCTTTGTTACTAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0320M09-0CleD/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E708557" ref_strand="+" ref_description="SGN-E708557 [FA36AD07]">
      <seq>gaagtttctgggctagtctttgctgatgggaagagatggggttactttccgggcttgcacccccggttgtctttcactaactttatggactcatttttcaggaaagcaaaatgtactatgagagttttcatggtctggaattctccagcatggatgtttacggctcggtatcagaggggacttgagagtgtacttaaccgtcaccgggatgcttgtgtggtggttttctctgagacaatcgaacttaatttctttagtggttttgtgaaggatggcttcaaagtggctgttgtgatgcctaatcttgatgagctcctactaggcacaccaacacatgtatttgcttctttctggtatgaatggaagcagacaagacattatcctttccattacagtgaactagtcaggctggcagctctatacaaatatggtggaatctatcttgactcagacatcatagtgttgaattcattgtcttcacttagtaatactgttgcttttgaggatgaccgacgtggaaaaactttgaatggtgctgtaatggcttttagaaagcacagtccttttgtaatggagtgtttgaaggagttttatgcatcttatgacgacacacaattgagatggaatggagctgatcttttgacaagagttgctagtaacttttccgtcaatggtaatctttccagtagaaagagggagatcaaatttcaaccctcgtttgttttcttccccatcggtcataacaatattaccagatacttctcggcaccagcaatggaaactgagaaaactaaacaagatacgctgttcaaaactatcctcaaagaagctgtcacatttca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0320M09-0CleD/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0320M09.4" temp_strand="+" temp_description="C02HBa0320M09.4  AC215438.3 htgs_phase:3 submitted_to_sgn_as:C02HBa0320M09 sequenced_by:kribb upload_account_name:korea">
        <position start="10980" stop="16364"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="11280" g_stop="11554" g_length="275"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="275" r_length="275" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="11555" i_stop="11996" i_length="442">
            <donor d_prob="0.975" d_score="1.00"/>
            <acceptor a_prob="0.976" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="11997" g_stop="12146" g_length="150"/>
          <reference_exon_boundary r_type="cDNA" r_start="276" r_stop="425" r_length="150" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="12147" i_stop="13195" i_length="1049">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.993" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="13196" g_stop="13330" g_length="135"/>
          <reference_exon_boundary r_type="cDNA" r_start="426" r_stop="560" r_length="135" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="13331" i_stop="13822" i_length="492">
            <donor d_prob="0.945" d_score="1.00"/>
            <acceptor a_prob="0.977" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="13823" g_stop="14017" g_length="195"/>
          <reference_exon_boundary r_type="cDNA" r_start="561" r_stop="755" r_length="195" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="14018" i_stop="15977" i_length="1960">
            <donor d_prob="0.993" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="15978" g_stop="16064" g_length="87"/>
          <reference_exon_boundary r_type="cDNA" r_start="756" r_stop="842" r_length="87" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0320M09.4" gen_strand="+" ref_id="SGN-E708557" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>842</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0320M09.4" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E708557" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="11280" e_stop="11554"/>
          <exon e_start="11997" e_stop="12146"/>
          <exon e_start="13196" e_stop="13330"/>
          <exon e_start="13823" e_stop="14017"/>
          <exon e_start="15978" e_stop="16064"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAAGTTTCTGGGCTAGTCTTTGCTGATGGGAAGAGATGGGGTTACTTTCCGGGCTTGCACCCCCGGTTGTCTTTCACTAACTTTATGGACTCATTTTTCAGGAAAGCAAAATGTACTATGAGAGTTTTCATGGTCTGGAATTCTCCAGCATGGATGTTTACGGCTCGGTATCAGAGGGGACTTGAGAGTGTACTTAACCGTCACCGGGATGCTTGTGTGGTGGTTTTCTCTGAGACAATCGAACTTAATTTCTTTAGTGGTTTTGTGAAGGATGGGTAAATTACAGAATTTCTTTCTTCCATTAGTTTAGATTTGTTATCTTGTTGGCAGAGGCAGATGTAGAGTACAGGTACCCGGTGCCAAGCATATATTTATGAGTTAAAATCCACAAATATTGCAACAAACAGTAGATATGAACCGATAACTTTAAAAATACAATGAGTTCATTTGCTAAAAGTACCTGGATCTGCCTCTGCTTCTTGTTTGTTTGACTAATATTTTCATCTGAAGTTATCCATATTTGCCTCATGAAAATCATAATCAAAGTGCTTCCAACAAGTCTTAAGTTCTTACTTAAAACAACAGTTTTTTTTTTTGTAAAAGAAGATAATCTCAAGTTCTCTTTGTGTATATACGCATAAATGCATGTCTATGGTGTTTTATTTTTCCAGTTGCACTTTATTAGAGATGGATTTGATGATAGATTATTTTCCGCAGCTTCAAAGTGGCTGTTGTGATGCCTAATCTTGATGAGCTCCTACTAGGCACACCAACACATGTATTTGCTTCTTTCTGGTATGAATGGAAGCAGACAAGACATTATCCTTTCCATTACAGTGAACTAGTCAGGCTGGCAGCTCTATACAAGTAAGCAATTTGGAAAATATACACTTCCCAATGTATTTAAATTGTTATGTACTCTGAAGCTAATCGAGGTGTTATCTCTACGATGATGCATTGTAGTTTTAATTTTAAATGTATTACCTTCCACCTAGTTTGGCATAACAGAGTTAAAAAAATCTAGTGTTTCCTGTATATAACATTTGACTTGAGGTAAGGCAAATTAGATAAGGAGCCCACACTTAAGATCTCGACTATTTATTTCAATAGGTATTATTTGTATAATAGAAAAATGATTCCAATAATTTTTTCGAGATTAATCAGTTGACGGCAGAAACAGTTACCTTCTTTGATGCAATAGATTAACTTCAATTTGCTGAGTTTTTTTTTGTTTTGAGAATTCAATTTGCTGAAGTTTATCTCAATGTGATTGTAATATTTCTCTTTCGGTTTTTGTTTCCCATAGCTGATATTCTTAAACTTGGTCTAGTAAACCACAAGACAGGTTGTTCATGAAGTTAAGAAGTGGAATTGATGATGGTTAGAAACACTTTATAAAAAATAACGGTGAGAGGACTAGTGAAGAAGGATCTAAGTTTTTTCTGAGTCATACAAAAGATTTTGCTGTTACTATATGTCAGTGAATAACTCATTGTTGTGTCTGTGGCACATGGAAAGCTTCTTTTTAAGATCACATAATTCCAGAAATTTGCTGCCTCTAGTGAGTTTTTTTTTATAGCAGAATTACATGAGTTATCCTTAGAGAAAGTAGATTGTGGTGAGGCTGCACCAACATCTCTTGGCAAAGAACCTTATGAAACTAGGATCATGAAATGTGTTACATCTCAATCTTTTCCTTGATTCTCATTAAAGAATTTATTTACCTTATAAAAAAGATTGATTAAAGGAGCATATGAAAGCTGTGGTCTAATGTTCGTGATGAACTTTTGTCCTTTCTATTTCTGCAGGATTATTCTAACTTCAGTAATATGACGACTTAATTTCTTTTGGTGAAGTTTATAGTTGTTGCGTTGTTATAAATAAACTTTCATGTTCTCCTTTTCCTTTAATTGCAGATATGGTGGAATCTATCTTGACTCAGACATCATAGTGTTGAATTCATTGTCTTCACTTAGTAATACTGTTGCTTTTGAGGATGACCGACGTGGAAAAACTTTGAATGGTGCTGTAATGGCTTTTAGAAAGCACAGGTACTTGCAAAACAATCTTTGCCTCTTGAATAGTTCTGAAGTGCTCTGTTCTGGTTCTGGTGTGCTTGGACCTTGCAATAACCACCCTTTCTGTGGCATTTTAGTATGTCCCATGCCTAATATTTTGAGGCCCACTGAGGAAGAGACATGAATAAGGAAAATAGAGGGAATTAGGGAAGGGCTGCTTTATGTGGATAAAATTACACATTCATAAAATAAAGATTGATCGAGGTGCACACAAGCTGAGCAAGATACCACTGTTTCCAAAAATATGTTTGGGTTGTCCTTAGCAGCCTGAAAACGCTATCGAATGCAAGTTTTGAACAATAACCTCGTATTGCACCTGTTAATCTGTCAGAAATATTTGCTACAGTTTATTGCGGGAGAAGGATAGGAAAACAAGTATTCCTAGCAAAAACATATAAATGTAAATTATTTTTCTCTTCTATCTGCCCTATAACCAAGATTCACTTTCTTGTATGTCTTTTGCAGTCCTTTTGTAATGGAGTGTTTGAAGGAGTTTTATGCATCTTATGACGACACACAATTGAGATGGAATGGAGCTGATCTTTTGACAAGAGTTGCTAGTAACTTTTCCGTCAATGGTAATCTTTCCAGTAGAAAGAGGGAGATCAAATTTCAACCCTCGTTTGTTTTCTTCCCCATCGGTCATAACAATATTACCAGGTACCAAACTTAACATCCTTCTTAATCTTGAGGTCAAAAGTATTAAAAGGTGGTACTTAGAATTGTGAGTGCTTAAATTTTTCAGTGAAAGATTTATTATTTATTATTTTGAACGCTTGATTATTGTTCATACCGTTGAATGGGGAAGTGTGTAGGCGGGTTAAGAACTCACACGTCTAGAAGATGAAAGTAGCAGAAGTGTTGAGATGGATGTGTGGGATACTAGGAGAGATATGATCAACAATGAAGACATTTGGGACAAGGCGGGTGTGGCCTCCATGGTGGACCAGATGAGGGAAGTGAGGAAGTGAGGAAGTGATGGTTCGAGCATATGAAGAGGAGATGCACAAATGTCACGCAGAGGAGGTGTGAGAGGTTGACAATTGTGGTTTGAGGAGAGGTAGCGCTAGGCCGAAAAAGTATTAACGAGATGTGATTAGATAAAGCATGACACATTTGCAGCTTATTGAGGACATGTCCCTAGATAAAAAGGTCCAAGATTAAGGTAGAATGCTAGTAGGTAGTCGAGTATTATTAGTAATTTAGTACTACTCTCTTATTATTCTTCAATTTTATTATTGCATGTTGTTTTCTTTGCTTCAGTTATCGTATTTGTGTTGTTGAGATTATTTTCAGCATGGCTTCTTTACTATTGTATCCTCTTTTCAACCTTCTTGAAATGCTTTACTTGAGCTGAGAATCTTCCGTAAACAATCTCTCAACCTACCAAGGTAGGGGTAAAGTTTGCTTACACACCACCCTCCTCAAACCTCACTTGTGGGATTACAGTAGGTATGTTATTGTAGTTGTTGATTATAGCACACATGGCTTTTAGTTCAGAATATGGCTTTAAGAATCTTATCTCTATTTGAAAACTACAGTTGTATGGTTAACAGAACTTAAATATTGCAAATTTTGTCCCAGAACAGGTCACTTGTTCAAAACTTTGAAAACTCAGTCTAGTTAGAGCTTCCTGATTTTAGCAGAACCTTCAAAAAAAAAAAAATGAAATTAAGGAGTGAAATTCTATCTATCCCCCCTGTAAATAGAATTATCCCTCTTAGAGCCCAGCAATTTATCCCTGGATTTCATTAGCTCCCACAATATGGCTTAGAGACCATACATTTGCTTGTGGTTAACCCCCTGACTAAATTGGAGTTTCTGCAACATCTTACTTCATCAAAAATAATAAATTCATCTATCCAAGGACTTGTATTCTCTGAACTGTAAAGCCGGTTGGGAAACTAACCTTGAGTTTCAATGAAAACTGATTCTCGGTTTTTCCAACTTGAATACCTGGTATTATAATGGTCAGCTAATAATTCAACTTGATAATGCTTGAATCAACAAGAGATCTCCTTCTAGTAGAAAAGATGTTGGAAAAGATAAAGGTAAAAATTTGGAAACCCTTACCCCTAACAATCTGATGAATCTGGAGAGAAACACGATTTTTCTGAAAGCAAAAAAGAATATGCAATTAGTGTTATGTACGGATGCATTTCTTCATTGCTTTTTTGGTGTAACATGGCTGATGCAACAGATTTCAGAGCCACAGATAGATTTTTTGAGCTCATTACACAACTTATATATTGATGTTGTTCTTGTAAATATTTTAAACACACCCCATGTGACTAGCTGTGAGAGTAAAATATCTTTTTGAGACAAAAAACAGAATGGTCAGCTAATTCCCATCCAATCTTATTTGAAATCTTTGAACTCTCAAAAGGCGACCTTCTATATTTTGGGCTTCATTAGAGGTCATCTTTTTCACATGGTATTTAAGTGGACCACTGGCTCTTTTAAATGTCCTCTTTTAAAAAGTTTTTGAGTCCTTGATCCGTCTAAATATCTCATTCAGGGAGCTTTGGCAGAATCTGAACATGTCATGGTTTCTGTGATCTGTCATCATCATATCTGCTGGTTAAAGTTACATAATTTGCTTATCTCTTTCTTTTGACAGATACTTCTCGGCACCAGCAATGGAAACTGAGAAAACTAAACAAGATACGCTGTTCAAAACTATCCTCAAAGAAGCTGTCACATTTCA</genome_strand>
        <mrna_strand>GAAGTTTCTGGGCTAGTCTTTGCTGATGGGAAGAGATGGGGTTACTTTCCGGGCTTGCACCCCCGGTTGTCTTTCACTAACTTTATGGACTCATTTTTCAGGAAAGCAAAATGTACTATGAGAGTTTTCATGGTCTGGAATTCTCCAGCATGGATGTTTACGGCTCGGTATCAGAGGGGACTTGAGAGTGTACTTAACCGTCACCGGGATGCTTGTGTGGTGGTTTTCTCTGAGACAATCGAACTTAATTTCTTTAGTGGTTTTGTGAAGGATGG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................CTTCAAAGTGGCTGTTGTGATGCCTAATCTTGATGAGCTCCTACTAGGCACACCAACACATGTATTTGCTTCTTTCTGGTATGAATGGAAGCAGACAAGACATTATCCTTTCCATTACAGTGAACTAGTCAGGCTGGCAGCTCTATACAA.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATATGGTGGAATCTATCTTGACTCAGACATCATAGTGTTGAATTCATTGTCTTCACTTAGTAATACTGTTGCTTTTGAGGATGACCGACGTGGAAAAACTTTGAATGGTGCTGTAATGGCTTTTAGAAAGCACAG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCCTTTTGTAATGGAGTGTTTGAAGGAGTTTTATGCATCTTATGACGACACACAATTGAGATGGAATGGAGCTGATCTTTTGACAAGAGTTGCTAGTAACTTTTCCGTCAATGGTAATCTTTCCAGTAGAAAGAGGGAGATCAAATTTCAACCCTCGTTTGTTTTCTTCCCCATCGGTCATAACAATATTACCAG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATACTTCTCGGCACCAGCAATGGAAACTGAGAAAACTAAACAAGATACGCTGTTCAAAACTATCCTCAAAGAAGCTGTCACATTTCA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0320M09-0CleD/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E688142" ref_strand="+" ref_description="SGN-E688142 [T3_tus_85_N10]">
      <seq>gctcggtatcagaggggacttgagagtgtacttaaccgtcaccgggatgcttgtgtggtggttttctctgagacaatcgaacttaatttctttagtggttttgtgaaggatggcttcaaagtggctgttgtgatgcctaatcttgatgagctcctactaggcacaccaacacatgtatttgcttctttctggtatgaatggaagcagacaagacattatcctttccattacagtgaactagtcaggctggcagctctatacaaatatggtggaatctatcttgactcagacatcatagtgttgaattcattgtcttcacttagtaatactgttgcttttgaggatgaccgacgtggaaaaactttgaatggtgctgtaatggcttttagaaagcacagtccttttgtaatggagtgtttgaaggagttttatgcatcttatgacgacacacaattgagatggaatggagctgatcttttgacaagagttgctagtaacttttccgtcaatggtaatctttccagtagaaagagggagatcaaatttcaaccctcgtttgttttcttccccatcggtcataacaatattaccagatacttctcggcaccagcaatggaaactgagaaaactaaacaagatacgctgttcaaaactatcctcaaagaagctgtcacatttcacttttggaatggcttaacttcagctatggttccagaggctggcagccttgcacaccggctcattaattacaattgcctacgttgctctgacacattgtgaaacaccattaaagcagatggatgaccttttaaagcatttttgttttcatgccattagatatacctcacagcttttaaagatattccggtggtgcttcatccatgaataatatataaattttttgttgtacaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0320M09-0CleD/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0320M09.4" temp_strand="+" temp_description="C02HBa0320M09.4  AC215438.3 htgs_phase:3 submitted_to_sgn_as:C02HBa0320M09 sequenced_by:kribb upload_account_name:korea">
        <position start="11142" stop="16599"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="11442" g_stop="11554" g_length="113"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="113" r_length="113" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="11555" i_stop="11996" i_length="442">
            <donor d_prob="0.975" d_score="1.00"/>
            <acceptor a_prob="0.976" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="11997" g_stop="12146" g_length="150"/>
          <reference_exon_boundary r_type="cDNA" r_start="114" r_stop="263" r_length="150" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="12147" i_stop="13195" i_length="1049">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.993" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="13196" g_stop="13330" g_length="135"/>
          <reference_exon_boundary r_type="cDNA" r_start="264" r_stop="398" r_length="135" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="13331" i_stop="13822" i_length="492">
            <donor d_prob="0.945" d_score="1.00"/>
            <acceptor a_prob="0.977" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="13823" g_stop="14017" g_length="195"/>
          <reference_exon_boundary r_type="cDNA" r_start="399" r_stop="593" r_length="195" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="14018" i_stop="15977" i_length="1960">
            <donor d_prob="0.993" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="15978" g_stop="16301" g_length="324"/>
          <reference_exon_boundary r_type="cDNA" r_start="594" r_stop="918" r_length="325" r_score="0.985"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0320M09.4" gen_strand="+" ref_id="SGN-E688142" ref_strand="+">
        <total_alignment_score>0.995</total_alignment_score>
        <cumulative_length_of_scored_exons>917</cumulative_length_of_scored_exons>
        <coverage percentage="0.999" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0320M09.4" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E688142" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="11442" e_stop="11554"/>
          <exon e_start="11997" e_stop="12146"/>
          <exon e_start="13196" e_stop="13330"/>
          <exon e_start="13823" e_stop="14017"/>
          <exon e_start="15978" e_stop="16301"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCTCGGTATCAGAGGGGACTTGAGAGTGTACTTAACCGTCACCGGGATGCTTGTGTGGTGGTTTTCTCTGAGACAATCGAACTTAATTTCTTTAGTGGTTTTGTGAAGGATGGGTAAATTACAGAATTTCTTTCTTCCATTAGTTTAGATTTGTTATCTTGTTGGCAGAGGCAGATGTAGAGTACAGGTACCCGGTGCCAAGCATATATTTATGAGTTAAAATCCACAAATATTGCAACAAACAGTAGATATGAACCGATAACTTTAAAAATACAATGAGTTCATTTGCTAAAAGTACCTGGATCTGCCTCTGCTTCTTGTTTGTTTGACTAATATTTTCATCTGAAGTTATCCATATTTGCCTCATGAAAATCATAATCAAAGTGCTTCCAACAAGTCTTAAGTTCTTACTTAAAACAACAGTTTTTTTTTTTGTAAAAGAAGATAATCTCAAGTTCTCTTTGTGTATATACGCATAAATGCATGTCTATGGTGTTTTATTTTTCCAGTTGCACTTTATTAGAGATGGATTTGATGATAGATTATTTTCCGCAGCTTCAAAGTGGCTGTTGTGATGCCTAATCTTGATGAGCTCCTACTAGGCACACCAACACATGTATTTGCTTCTTTCTGGTATGAATGGAAGCAGACAAGACATTATCCTTTCCATTACAGTGAACTAGTCAGGCTGGCAGCTCTATACAAGTAAGCAATTTGGAAAATATACACTTCCCAATGTATTTAAATTGTTATGTACTCTGAAGCTAATCGAGGTGTTATCTCTACGATGATGCATTGTAGTTTTAATTTTAAATGTATTACCTTCCACCTAGTTTGGCATAACAGAGTTAAAAAAATCTAGTGTTTCCTGTATATAACATTTGACTTGAGGTAAGGCAAATTAGATAAGGAGCCCACACTTAAGATCTCGACTATTTATTTCAATAGGTATTATTTGTATAATAGAAAAATGATTCCAATAATTTTTTCGAGATTAATCAGTTGACGGCAGAAACAGTTACCTTCTTTGATGCAATAGATTAACTTCAATTTGCTGAGTTTTTTTTTGTTTTGAGAATTCAATTTGCTGAAGTTTATCTCAATGTGATTGTAATATTTCTCTTTCGGTTTTTGTTTCCCATAGCTGATATTCTTAAACTTGGTCTAGTAAACCACAAGACAGGTTGTTCATGAAGTTAAGAAGTGGAATTGATGATGGTTAGAAACACTTTATAAAAAATAACGGTGAGAGGACTAGTGAAGAAGGATCTAAGTTTTTTCTGAGTCATACAAAAGATTTTGCTGTTACTATATGTCAGTGAATAACTCATTGTTGTGTCTGTGGCACATGGAAAGCTTCTTTTTAAGATCACATAATTCCAGAAATTTGCTGCCTCTAGTGAGTTTTTTTTTATAGCAGAATTACATGAGTTATCCTTAGAGAAAGTAGATTGTGGTGAGGCTGCACCAACATCTCTTGGCAAAGAACCTTATGAAACTAGGATCATGAAATGTGTTACATCTCAATCTTTTCCTTGATTCTCATTAAAGAATTTATTTACCTTATAAAAAAGATTGATTAAAGGAGCATATGAAAGCTGTGGTCTAATGTTCGTGATGAACTTTTGTCCTTTCTATTTCTGCAGGATTATTCTAACTTCAGTAATATGACGACTTAATTTCTTTTGGTGAAGTTTATAGTTGTTGCGTTGTTATAAATAAACTTTCATGTTCTCCTTTTCCTTTAATTGCAGATATGGTGGAATCTATCTTGACTCAGACATCATAGTGTTGAATTCATTGTCTTCACTTAGTAATACTGTTGCTTTTGAGGATGACCGACGTGGAAAAACTTTGAATGGTGCTGTAATGGCTTTTAGAAAGCACAGGTACTTGCAAAACAATCTTTGCCTCTTGAATAGTTCTGAAGTGCTCTGTTCTGGTTCTGGTGTGCTTGGACCTTGCAATAACCACCCTTTCTGTGGCATTTTAGTATGTCCCATGCCTAATATTTTGAGGCCCACTGAGGAAGAGACATGAATAAGGAAAATAGAGGGAATTAGGGAAGGGCTGCTTTATGTGGATAAAATTACACATTCATAAAATAAAGATTGATCGAGGTGCACACAAGCTGAGCAAGATACCACTGTTTCCAAAAATATGTTTGGGTTGTCCTTAGCAGCCTGAAAACGCTATCGAATGCAAGTTTTGAACAATAACCTCGTATTGCACCTGTTAATCTGTCAGAAATATTTGCTACAGTTTATTGCGGGAGAAGGATAGGAAAACAAGTATTCCTAGCAAAAACATATAAATGTAAATTATTTTTCTCTTCTATCTGCCCTATAACCAAGATTCACTTTCTTGTATGTCTTTTGCAGTCCTTTTGTAATGGAGTGTTTGAAGGAGTTTTATGCATCTTATGACGACACACAATTGAGATGGAATGGAGCTGATCTTTTGACAAGAGTTGCTAGTAACTTTTCCGTCAATGGTAATCTTTCCAGTAGAAAGAGGGAGATCAAATTTCAACCCTCGTTTGTTTTCTTCCCCATCGGTCATAACAATATTACCAGGTACCAAACTTAACATCCTTCTTAATCTTGAGGTCAAAAGTATTAAAAGGTGGTACTTAGAATTGTGAGTGCTTAAATTTTTCAGTGAAAGATTTATTATTTATTATTTTGAACGCTTGATTATTGTTCATACCGTTGAATGGGGAAGTGTGTAGGCGGGTTAAGAACTCACACGTCTAGAAGATGAAAGTAGCAGAAGTGTTGAGATGGATGTGTGGGATACTAGGAGAGATATGATCAACAATGAAGACATTTGGGACAAGGCGGGTGTGGCCTCCATGGTGGACCAGATGAGGGAAGTGAGGAAGTGAGGAAGTGATGGTTCGAGCATATGAAGAGGAGATGCACAAATGTCACGCAGAGGAGGTGTGAGAGGTTGACAATTGTGGTTTGAGGAGAGGTAGCGCTAGGCCGAAAAAGTATTAACGAGATGTGATTAGATAAAGCATGACACATTTGCAGCTTATTGAGGACATGTCCCTAGATAAAAAGGTCCAAGATTAAGGTAGAATGCTAGTAGGTAGTCGAGTATTATTAGTAATTTAGTACTACTCTCTTATTATTCTTCAATTTTATTATTGCATGTTGTTTTCTTTGCTTCAGTTATCGTATTTGTGTTGTTGAGATTATTTTCAGCATGGCTTCTTTACTATTGTATCCTCTTTTCAACCTTCTTGAAATGCTTTACTTGAGCTGAGAATCTTCCGTAAACAATCTCTCAACCTACCAAGGTAGGGGTAAAGTTTGCTTACACACCACCCTCCTCAAACCTCACTTGTGGGATTACAGTAGGTATGTTATTGTAGTTGTTGATTATAGCACACATGGCTTTTAGTTCAGAATATGGCTTTAAGAATCTTATCTCTATTTGAAAACTACAGTTGTATGGTTAACAGAACTTAAATATTGCAAATTTTGTCCCAGAACAGGTCACTTGTTCAAAACTTTGAAAACTCAGTCTAGTTAGAGCTTCCTGATTTTAGCAGAACCTTCAAAAAAAAAAAAATGAAATTAAGGAGTGAAATTCTATCTATCCCCCCTGTAAATAGAATTATCCCTCTTAGAGCCCAGCAATTTATCCCTGGATTTCATTAGCTCCCACAATATGGCTTAGAGACCATACATTTGCTTGTGGTTAACCCCCTGACTAAATTGGAGTTTCTGCAACATCTTACTTCATCAAAAATAATAAATTCATCTATCCAAGGACTTGTATTCTCTGAACTGTAAAGCCGGTTGGGAAACTAACCTTGAGTTTCAATGAAAACTGATTCTCGGTTTTTCCAACTTGAATACCTGGTATTATAATGGTCAGCTAATAATTCAACTTGATAATGCTTGAATCAACAAGAGATCTCCTTCTAGTAGAAAAGATGTTGGAAAAGATAAAGGTAAAAATTTGGAAACCCTTACCCCTAACAATCTGATGAATCTGGAGAGAAACACGATTTTTCTGAAAGCAAAAAAGAATATGCAATTAGTGTTATGTACGGATGCATTTCTTCATTGCTTTTTTGGTGTAACATGGCTGATGCAACAGATTTCAGAGCCACAGATAGATTTTTTGAGCTCATTACACAACTTATATATTGATGTTGTTCTTGTAAATATTTTAAACACACCCCATGTGACTAGCTGTGAGAGTAAAATATCTTTTTGAGACAAAAAACAGAATGGTCAGCTAATTCCCATCCAATCTTATTTGAAATCTTTGAACTCTCAAAAGGCGACCTTCTATATTTTGGGCTTCATTAGAGGTCATCTTTTTCACATGGTATTTAAGTGGACCACTGGCTCTTTTAAATGTCCTCTTTTAAAAAGTTTTTGAGTCCTTGATCCGTCTAAATATCTCATTCAGGGAGCTTTGGCAGAATCTGAACATGTCATGGTTTCTGTGATCTGTCATCATCATATCTGCTGGTTAAAGTTACATAATTTGCTTATCTCTTTCTTTTGACAGATACTTCTCGGCACCAGCAATGGAAACTGAGAAAACTAAACAAGATACGCTGTTCAAAACTATCCTCAAAGAAGCTGTCACATTTCACTTTTGGAATGGCTTAACTTCAGCTATGGTTCCAGAGGCTGGCAGCCTTGCACACCGGCTCATTAATTACAATTGCCTACGTTGCTCTGACACATTGTGAAACACCATTAAAGCAGATGGATGACCTTTTAAAGCATTTTTGTTTTCATGCCATTAGATATACCTCACAGCTTTTAAAGATATTCCGGTGGTGCTTCATCCATGAATAATATATAAA-TTTTTGTTGTACAAAATATG</genome_strand>
        <mrna_strand>GCTCGGTATCAGAGGGGACTTGAGAGTGTACTTAACCGTCACCGGGATGCTTGTGTGGTGGTTTTCTCTGAGACAATCGAACTTAATTTCTTTAGTGGTTTTGTGAAGGATGG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................CTTCAAAGTGGCTGTTGTGATGCCTAATCTTGATGAGCTCCTACTAGGCACACCAACACATGTATTTGCTTCTTTCTGGTATGAATGGAAGCAGACAAGACATTATCCTTTCCATTACAGTGAACTAGTCAGGCTGGCAGCTCTATACAA.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATATGGTGGAATCTATCTTGACTCAGACATCATAGTGTTGAATTCATTGTCTTCACTTAGTAATACTGTTGCTTTTGAGGATGACCGACGTGGAAAAACTTTGAATGGTGCTGTAATGGCTTTTAGAAAGCACAG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCCTTTTGTAATGGAGTGTTTGAAGGAGTTTTATGCATCTTATGACGACACACAATTGAGATGGAATGGAGCTGATCTTTTGACAAGAGTTGCTAGTAACTTTTCCGTCAATGGTAATCTTTCCAGTAGAAAGAGGGAGATCAAATTTCAACCCTCGTTTGTTTTCTTCCCCATCGGTCATAACAATATTACCAG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATACTTCTCGGCACCAGCAATGGAAACTGAGAAAACTAAACAAGATACGCTGTTCAAAACTATCCTCAAAGAAGCTGTCACATTTCACTTTTGGAATGGCTTAACTTCAGCTATGGTTCCAGAGGCTGGCAGCCTTGCACACCGGCTCATTAATTACAATTGCCTACGTTGCTCTGACACATTGTGAAACACCATTAAAGCAGATGGATGACCTTTTAAAGCATTTTTGTTTTCATGCCATTAGATATACCTCACAGCTTTTAAAGATATTCCGGTGGTGCTTCATCCATGAATAATATATAAATTTTTTGTTGTACAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0320M09-0CleD/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E335968" ref_strand="+" ref_description="SGN-E335968 [cTOE-6-D7]">
      <seq>ctcggtatcagaggggacttgagagtgtacttaaccgtcaccgggatgcttgtgtggtggttttctctgagacaatcgaacttaatttctttagtggttttgtgaaggatggcttcaaagtggctgttgtgatgcctaatcttgatgagctcctactaggcacaccaacacatgtatttgcttctttctggtatgaatggaagcagacaagacattatcctttccattacagtgaactagtcaggctggcagctctatacaaatatggtggaatctatcttgactcagacatcatagtgttgaattcattgtcttcacttagtaatactgttgcttttgaggatgaccgacgtggaaaaactttgaatggtgctgtaatggctttt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0320M09-0CleD/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0320M09.4" temp_strand="+" temp_description="C02HBa0320M09.4  AC215438.3 htgs_phase:3 submitted_to_sgn_as:C02HBa0320M09 sequenced_by:kribb upload_account_name:korea">
        <position start="11143" stop="13619"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="11443" g_stop="11554" g_length="112"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="112" r_length="112" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="11555" i_stop="11996" i_length="442">
            <donor d_prob="0.975" d_score="1.00"/>
            <acceptor a_prob="0.976" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="11997" g_stop="12146" g_length="150"/>
          <reference_exon_boundary r_type="cDNA" r_start="113" r_stop="262" r_length="150" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="12147" i_stop="13195" i_length="1049">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.993" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="13196" g_stop="13319" g_length="124"/>
          <reference_exon_boundary r_type="cDNA" r_start="263" r_stop="386" r_length="124" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0320M09.4" gen_strand="+" ref_id="SGN-E335968" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>386</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0320M09.4" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E335968" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="11443" e_stop="11554"/>
          <exon e_start="11997" e_stop="12146"/>
          <exon e_start="13196" e_stop="13319"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTCGGTATCAGAGGGGACTTGAGAGTGTACTTAACCGTCACCGGGATGCTTGTGTGGTGGTTTTCTCTGAGACAATCGAACTTAATTTCTTTAGTGGTTTTGTGAAGGATGGGTAAATTACAGAATTTCTTTCTTCCATTAGTTTAGATTTGTTATCTTGTTGGCAGAGGCAGATGTAGAGTACAGGTACCCGGTGCCAAGCATATATTTATGAGTTAAAATCCACAAATATTGCAACAAACAGTAGATATGAACCGATAACTTTAAAAATACAATGAGTTCATTTGCTAAAAGTACCTGGATCTGCCTCTGCTTCTTGTTTGTTTGACTAATATTTTCATCTGAAGTTATCCATATTTGCCTCATGAAAATCATAATCAAAGTGCTTCCAACAAGTCTTAAGTTCTTACTTAAAACAACAGTTTTTTTTTTTGTAAAAGAAGATAATCTCAAGTTCTCTTTGTGTATATACGCATAAATGCATGTCTATGGTGTTTTATTTTTCCAGTTGCACTTTATTAGAGATGGATTTGATGATAGATTATTTTCCGCAGCTTCAAAGTGGCTGTTGTGATGCCTAATCTTGATGAGCTCCTACTAGGCACACCAACACATGTATTTGCTTCTTTCTGGTATGAATGGAAGCAGACAAGACATTATCCTTTCCATTACAGTGAACTAGTCAGGCTGGCAGCTCTATACAAGTAAGCAATTTGGAAAATATACACTTCCCAATGTATTTAAATTGTTATGTACTCTGAAGCTAATCGAGGTGTTATCTCTACGATGATGCATTGTAGTTTTAATTTTAAATGTATTACCTTCCACCTAGTTTGGCATAACAGAGTTAAAAAAATCTAGTGTTTCCTGTATATAACATTTGACTTGAGGTAAGGCAAATTAGATAAGGAGCCCACACTTAAGATCTCGACTATTTATTTCAATAGGTATTATTTGTATAATAGAAAAATGATTCCAATAATTTTTTCGAGATTAATCAGTTGACGGCAGAAACAGTTACCTTCTTTGATGCAATAGATTAACTTCAATTTGCTGAGTTTTTTTTTGTTTTGAGAATTCAATTTGCTGAAGTTTATCTCAATGTGATTGTAATATTTCTCTTTCGGTTTTTGTTTCCCATAGCTGATATTCTTAAACTTGGTCTAGTAAACCACAAGACAGGTTGTTCATGAAGTTAAGAAGTGGAATTGATGATGGTTAGAAACACTTTATAAAAAATAACGGTGAGAGGACTAGTGAAGAAGGATCTAAGTTTTTTCTGAGTCATACAAAAGATTTTGCTGTTACTATATGTCAGTGAATAACTCATTGTTGTGTCTGTGGCACATGGAAAGCTTCTTTTTAAGATCACATAATTCCAGAAATTTGCTGCCTCTAGTGAGTTTTTTTTTATAGCAGAATTACATGAGTTATCCTTAGAGAAAGTAGATTGTGGTGAGGCTGCACCAACATCTCTTGGCAAAGAACCTTATGAAACTAGGATCATGAAATGTGTTACATCTCAATCTTTTCCTTGATTCTCATTAAAGAATTTATTTACCTTATAAAAAAGATTGATTAAAGGAGCATATGAAAGCTGTGGTCTAATGTTCGTGATGAACTTTTGTCCTTTCTATTTCTGCAGGATTATTCTAACTTCAGTAATATGACGACTTAATTTCTTTTGGTGAAGTTTATAGTTGTTGCGTTGTTATAAATAAACTTTCATGTTCTCCTTTTCCTTTAATTGCAGATATGGTGGAATCTATCTTGACTCAGACATCATAGTGTTGAATTCATTGTCTTCACTTAGTAATACTGTTGCTTTTGAGGATGACCGACGTGGAAAAACTTTGAATGGTGCTGTAATGGCTTTT</genome_strand>
        <mrna_strand>CTCGGTATCAGAGGGGACTTGAGAGTGTACTTAACCGTCACCGGGATGCTTGTGTGGTGGTTTTCTCTGAGACAATCGAACTTAATTTCTTTAGTGGTTTTGTGAAGGATGG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................CTTCAAAGTGGCTGTTGTGATGCCTAATCTTGATGAGCTCCTACTAGGCACACCAACACATGTATTTGCTTCTTTCTGGTATGAATGGAAGCAGACAAGACATTATCCTTTCCATTACAGTGAACTAGTCAGGCTGGCAGCTCTATACAA.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATATGGTGGAATCTATCTTGACTCAGACATCATAGTGTTGAATTCATTGTCTTCACTTAGTAATACTGTTGCTTTTGAGGATGACCGACGTGGAAAAACTTTGAATGGTGCTGTAATGGCTTTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0320M09-0CleD/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E371473" ref_strand="+" ref_description="SGN-E371473 [TUS-29-P14]">
      <seq>tgctacagtttattgcgggagaaggatagaaacacaacccttttgtaatggagtgtttgaaggagccttatgacgacacacaattgagatggaatgtagctgatcttttgacaagagttgctagtaaattttccgtcaatggtaatctttccggtagaaagagggagatcaaatttcaaccctcgtttgtttacttccctatcggtcataacaatattaccagatacttctcggcaccagcaacggaaactgagaaagctaaacaagatacgctgttcaaaactatcctcaaagaagccgtcacatttcacttttggaatggcttaacttcggctatggttccagaggctggcagccttgcacaccggctcattaattacaattgcctacgttgctctgacacattgtgaaacaccattaaagcagatggatgaccttttaaagcatttttgttttcatgccattagatatacctcacagcttttaaagatattccggtggttcttcatccataatttttgttgtacaaaatatgaatctccagttggttgcctttctggaccttgtgtttttagtctatattagttgttgtagattccctcgagggacgaattaagaggtcctgctttttgtagctgagttcttactgtatatttccccttgtgagttttgtagaactatttgtagtcattggcaacaggacaatgatatatttaaatgatgttttttgtatgtacccaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0320M09-0CleD/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0320M09.4" temp_strand="+" temp_description="C02HBa0320M09.4  AC215438.3 htgs_phase:3 submitted_to_sgn_as:C02HBa0320M09 sequenced_by:kribb upload_account_name:korea">
        <position start="13396" stop="16790"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="13696" g_stop="13732" g_length="37"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="37" r_length="37" r_score="0.946"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="13733" i_stop="13822" i_length="90">
            <donor d_prob="0.314" d_score="0.00"/>
            <acceptor a_prob="0.977" a_score="0.80"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="13823" g_stop="14017" g_length="195"/>
          <reference_exon_boundary r_type="cDNA" r_start="38" r_stop="223" r_length="186" r_score="0.923"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="14018" i_stop="15977" i_length="1960">
            <donor d_prob="0.993" d_score="0.96"/>
            <acceptor a_prob="0.999" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="15978" g_stop="16485" g_length="508"/>
          <reference_exon_boundary r_type="cDNA" r_start="224" r_stop="728" r_length="505" r_score="0.927"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="740" polyA_stop="750"/>
      <MATCH_line gen_id="C02HBa0320M09.4" gen_strand="+" ref_id="SGN-E371473" ref_strand="+">
        <total_alignment_score>0.926</total_alignment_score>
        <cumulative_length_of_scored_exons>740</cumulative_length_of_scored_exons>
        <coverage percentage="0.987" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0320M09.4" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E371473" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="13696" e_stop="13732"/>
          <exon e_start="13823" e_stop="14017"/>
          <exon e_start="15978" e_stop="16485"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGCTACAGTTTATTGCGGGAGAAGGATAGGAAAACAAGTATTCCTAGCAAAAACATATAAATGTAAATTATTTTTCTCTTCTATCTGCCCTATAACCAAGATTCACTTTCTTGTATGTCTTTTGCAGTCCTTTTGTAATGGAGTGTTTGAAGGAGTTTTATGCATCTTATGACGACACACAATTGAGATGGAATGGAGCTGATCTTTTGACAAGAGTTGCTAGTAACTTTTCCGTCAATGGTAATCTTTCCAGTAGAAAGAGGGAGATCAAATTTCAACCCTCGTTTGTTTTCTTCCCCATCGGTCATAACAATATTACCAGGTACCAAACTTAACATCCTTCTTAATCTTGAGGTCAAAAGTATTAAAAGGTGGTACTTAGAATTGTGAGTGCTTAAATTTTTCAGTGAAAGATTTATTATTTATTATTTTGAACGCTTGATTATTGTTCATACCGTTGAATGGGGAAGTGTGTAGGCGGGTTAAGAACTCACACGTCTAGAAGATGAAAGTAGCAGAAGTGTTGAGATGGATGTGTGGGATACTAGGAGAGATATGATCAACAATGAAGACATTTGGGACAAGGCGGGTGTGGCCTCCATGGTGGACCAGATGAGGGAAGTGAGGAAGTGAGGAAGTGATGGTTCGAGCATATGAAGAGGAGATGCACAAATGTCACGCAGAGGAGGTGTGAGAGGTTGACAATTGTGGTTTGAGGAGAGGTAGCGCTAGGCCGAAAAAGTATTAACGAGATGTGATTAGATAAAGCATGACACATTTGCAGCTTATTGAGGACATGTCCCTAGATAAAAAGGTCCAAGATTAAGGTAGAATGCTAGTAGGTAGTCGAGTATTATTAGTAATTTAGTACTACTCTCTTATTATTCTTCAATTTTATTATTGCATGTTGTTTTCTTTGCTTCAGTTATCGTATTTGTGTTGTTGAGATTATTTTCAGCATGGCTTCTTTACTATTGTATCCTCTTTTCAACCTTCTTGAAATGCTTTACTTGAGCTGAGAATCTTCCGTAAACAATCTCTCAACCTACCAAGGTAGGGGTAAAGTTTGCTTACACACCACCCTCCTCAAACCTCACTTGTGGGATTACAGTAGGTATGTTATTGTAGTTGTTGATTATAGCACACATGGCTTTTAGTTCAGAATATGGCTTTAAGAATCTTATCTCTATTTGAAAACTACAGTTGTATGGTTAACAGAACTTAAATATTGCAAATTTTGTCCCAGAACAGGTCACTTGTTCAAAACTTTGAAAACTCAGTCTAGTTAGAGCTTCCTGATTTTAGCAGAACCTTCAAAAAAAAAAAAATGAAATTAAGGAGTGAAATTCTATCTATCCCCCCTGTAAATAGAATTATCCCTCTTAGAGCCCAGCAATTTATCCCTGGATTTCATTAGCTCCCACAATATGGCTTAGAGACCATACATTTGCTTGTGGTTAACCCCCTGACTAAATTGGAGTTTCTGCAACATCTTACTTCATCAAAAATAATAAATTCATCTATCCAAGGACTTGTATTCTCTGAACTGTAAAGCCGGTTGGGAAACTAACCTTGAGTTTCAATGAAAACTGATTCTCGGTTTTTCCAACTTGAATACCTGGTATTATAATGGTCAGCTAATAATTCAACTTGATAATGCTTGAATCAACAAGAGATCTCCTTCTAGTAGAAAAGATGTTGGAAAAGATAAAGGTAAAAATTTGGAAACCCTTACCCCTAACAATCTGATGAATCTGGAGAGAAACACGATTTTTCTGAAAGCAAAAAAGAATATGCAATTAGTGTTATGTACGGATGCATTTCTTCATTGCTTTTTTGGTGTAACATGGCTGATGCAACAGATTTCAGAGCCACAGATAGATTTTTTGAGCTCATTACACAACTTATATATTGATGTTGTTCTTGTAAATATTTTAAACACACCCCATGTGACTAGCTGTGAGAGTAAAATATCTTTTTGAGACAAAAAACAGAATGGTCAGCTAATTCCCATCCAATCTTATTTGAAATCTTTGAACTCTCAAAAGGCGACCTTCTATATTTTGGGCTTCATTAGAGGTCATCTTTTTCACATGGTATTTAAGTGGACCACTGGCTCTTTTAAATGTCCTCTTTTAAAAAGTTTTTGAGTCCTTGATCCGTCTAAATATCTCATTCAGGGAGCTTTGGCAGAATCTGAACATGTCATGGTTTCTGTGATCTGTCATCATCATATCTGCTGGTTAAAGTTACATAATTTGCTTATCTCTTTCTTTTGACAGATACTTCTCGGCACCAGCAATGGAAACTGAGAAAACTAAACAAGATACGCTGTTCAAAACTATCCTCAAAGAAGCTGTCACATTTCACTTTTGGAATGGCTTAACTTCAGCTATGGTTCCAGAGGCTGGCAGCCTTGCACACCGGCTCATTAATTACAATTGCCTACGTTGCTCTGACACATTGTGAAACACCATTAAAGCAGATGGATGACCTTTTAAAGCATTTTTGTTTTCATGCCATTAGATATACCTCACAGCTTTTAAAGATATTCCGGTGGTGCTTCATCCATGAATAATATATAAATTTTTGTTGTACAAAATATGAATCTCCAGTTGGTTGGCTTTCTGGACC--------TT-GTCTATATTAGTTGTTGTAGATTCCCTCGAGGGACGAATTAAGAGGTCCTGCTTTTTGTAGCTGAGTTCTTACTGTATATTTCCCCTTGTGAGTTTTGTAGAACTATTTGTAGTCATTGGCAACAGGACAATGATATATTTAAATGATGTTCTT</genome_strand>
        <mrna_strand>TGCTACAGTTTATTGCGGGAGAAGGATAGAAACACAA..........................................................................................CCCTTTTGTAATGGAGTGTTTGAA-G-G----A-GC--CTTATGACGACACACAATTGAGATGGAATGTAGCTGATCTTTTGACAAGAGTTGCTAGTAAATTTTCCGTCAATGGTAATCTTTCCGGTAGAAAGAGGGAGATCAAATTTCAACCCTCGTTTGTTTACTTCCCTATCGGTCATAACAATATTACCAG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATACTTCTCGGCACCAGCAACGGAAACTGAGAAAGCTAAACAAGATACGCTGTTCAAAACTATCCTCAAAGAAGCCGTCACATTTCACTTTTGGAATGGCTTAACTTCGGCTATGGTTCCAGAGGCTGGCAGCCTTGCACACCGGCTCATTAATTACAATTGCCTACGTTGCTCTGACACATTGTGAAACACCATTAAAGCAGATGGATGACCTTTTAAAGCATTTTTGTTTTCATGCCATTAGATATACCTCACAGCTTTTAAAGATATTCCGGTGGTTCTTCATCC-----------AT-AATTTTTGTTGTACAAAATATGAATCTCCAGTTGGTTGCCTTTCTGGACCTTGTGTTTTTAGTCTATATTAGTTGTTGTAGATTCCCTCGAGGGACGAATTAAGAGGTCCTGCTTTTTGTAGCTGAGTTCTTACTGTATATTTCCCCTTGTGAGTTTTGTAGAACTATTTGTAGTCATTGGCAACAGGACAATGATATATTTAAATGATGTTTTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0320M09-0CleD/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E371097" ref_strand="+" ref_description="SGN-E371097 [TUS-29-P13]">
      <seq>tgctacagtttattgcgggagaaggatagaaacacaacccttttgtaatggagtgtttgaaggagccttatgacgacacacaattgagatggaatgtagctgatcttttgacaagagttgctagtaaattttccgtcaatggtaatctttccggtagaaagagggagatcaaatttcaaccctcgtttgtttacttccctatcggtcataacaatattaccagatacttctcggcaccagcaacggaaactgagaaagctaaacaagatacgctgttcaaaactatcctcaaagaagccgtcacatttcacttttggaatggcttaacttcggctatggttccagaggctggcagccttgcacaccggctcattaattacaattgcctacgttgctctgacacattgtgaaacaccattaaagcagatggatgaccttttaaagcatttttgttttcatgccattagatatacctcacagcttttaaagatattccggtggttcttcatccataatttttgttgtacaaaatatgaatctccagttggttgcctttctggaccttgtgtttttagtctatattagttgttgtagattccctcgagggacgaattaagaggtcctgctttttgtagctgagttcttactgtatatt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0320M09-0CleD/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0320M09.4" temp_strand="+" temp_description="C02HBa0320M09.4  AC215438.3 htgs_phase:3 submitted_to_sgn_as:C02HBa0320M09 sequenced_by:kribb upload_account_name:korea">
        <position start="13396" stop="16712"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="13696" g_stop="13732" g_length="37"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="37" r_length="37" r_score="0.946"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="13733" i_stop="13822" i_length="90">
            <donor d_prob="0.314" d_score="0.00"/>
            <acceptor a_prob="0.977" a_score="0.80"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="13823" g_stop="14017" g_length="195"/>
          <reference_exon_boundary r_type="cDNA" r_start="38" r_stop="223" r_length="186" r_score="0.923"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="14018" i_stop="15977" i_length="1960">
            <donor d_prob="0.993" d_score="0.96"/>
            <acceptor a_prob="0.999" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="15978" g_stop="16412" g_length="435"/>
          <reference_exon_boundary r_type="cDNA" r_start="224" r_stop="655" r_length="432" r_score="0.917"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0320M09.4" gen_strand="+" ref_id="SGN-E371097" ref_strand="+">
        <total_alignment_score>0.919</total_alignment_score>
        <cumulative_length_of_scored_exons>667</cumulative_length_of_scored_exons>
        <coverage percentage="1.018" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0320M09.4" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E371097" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="13696" e_stop="13732"/>
          <exon e_start="13823" e_stop="14017"/>
          <exon e_start="15978" e_stop="16412"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGCTACAGTTTATTGCGGGAGAAGGATAGGAAAACAAGTATTCCTAGCAAAAACATATAAATGTAAATTATTTTTCTCTTCTATCTGCCCTATAACCAAGATTCACTTTCTTGTATGTCTTTTGCAGTCCTTTTGTAATGGAGTGTTTGAAGGAGTTTTATGCATCTTATGACGACACACAATTGAGATGGAATGGAGCTGATCTTTTGACAAGAGTTGCTAGTAACTTTTCCGTCAATGGTAATCTTTCCAGTAGAAAGAGGGAGATCAAATTTCAACCCTCGTTTGTTTTCTTCCCCATCGGTCATAACAATATTACCAGGTACCAAACTTAACATCCTTCTTAATCTTGAGGTCAAAAGTATTAAAAGGTGGTACTTAGAATTGTGAGTGCTTAAATTTTTCAGTGAAAGATTTATTATTTATTATTTTGAACGCTTGATTATTGTTCATACCGTTGAATGGGGAAGTGTGTAGGCGGGTTAAGAACTCACACGTCTAGAAGATGAAAGTAGCAGAAGTGTTGAGATGGATGTGTGGGATACTAGGAGAGATATGATCAACAATGAAGACATTTGGGACAAGGCGGGTGTGGCCTCCATGGTGGACCAGATGAGGGAAGTGAGGAAGTGAGGAAGTGATGGTTCGAGCATATGAAGAGGAGATGCACAAATGTCACGCAGAGGAGGTGTGAGAGGTTGACAATTGTGGTTTGAGGAGAGGTAGCGCTAGGCCGAAAAAGTATTAACGAGATGTGATTAGATAAAGCATGACACATTTGCAGCTTATTGAGGACATGTCCCTAGATAAAAAGGTCCAAGATTAAGGTAGAATGCTAGTAGGTAGTCGAGTATTATTAGTAATTTAGTACTACTCTCTTATTATTCTTCAATTTTATTATTGCATGTTGTTTTCTTTGCTTCAGTTATCGTATTTGTGTTGTTGAGATTATTTTCAGCATGGCTTCTTTACTATTGTATCCTCTTTTCAACCTTCTTGAAATGCTTTACTTGAGCTGAGAATCTTCCGTAAACAATCTCTCAACCTACCAAGGTAGGGGTAAAGTTTGCTTACACACCACCCTCCTCAAACCTCACTTGTGGGATTACAGTAGGTATGTTATTGTAGTTGTTGATTATAGCACACATGGCTTTTAGTTCAGAATATGGCTTTAAGAATCTTATCTCTATTTGAAAACTACAGTTGTATGGTTAACAGAACTTAAATATTGCAAATTTTGTCCCAGAACAGGTCACTTGTTCAAAACTTTGAAAACTCAGTCTAGTTAGAGCTTCCTGATTTTAGCAGAACCTTCAAAAAAAAAAAAATGAAATTAAGGAGTGAAATTCTATCTATCCCCCCTGTAAATAGAATTATCCCTCTTAGAGCCCAGCAATTTATCCCTGGATTTCATTAGCTCCCACAATATGGCTTAGAGACCATACATTTGCTTGTGGTTAACCCCCTGACTAAATTGGAGTTTCTGCAACATCTTACTTCATCAAAAATAATAAATTCATCTATCCAAGGACTTGTATTCTCTGAACTGTAAAGCCGGTTGGGAAACTAACCTTGAGTTTCAATGAAAACTGATTCTCGGTTTTTCCAACTTGAATACCTGGTATTATAATGGTCAGCTAATAATTCAACTTGATAATGCTTGAATCAACAAGAGATCTCCTTCTAGTAGAAAAGATGTTGGAAAAGATAAAGGTAAAAATTTGGAAACCCTTACCCCTAACAATCTGATGAATCTGGAGAGAAACACGATTTTTCTGAAAGCAAAAAAGAATATGCAATTAGTGTTATGTACGGATGCATTTCTTCATTGCTTTTTTGGTGTAACATGGCTGATGCAACAGATTTCAGAGCCACAGATAGATTTTTTGAGCTCATTACACAACTTATATATTGATGTTGTTCTTGTAAATATTTTAAACACACCCCATGTGACTAGCTGTGAGAGTAAAATATCTTTTTGAGACAAAAAACAGAATGGTCAGCTAATTCCCATCCAATCTTATTTGAAATCTTTGAACTCTCAAAAGGCGACCTTCTATATTTTGGGCTTCATTAGAGGTCATCTTTTTCACATGGTATTTAAGTGGACCACTGGCTCTTTTAAATGTCCTCTTTTAAAAAGTTTTTGAGTCCTTGATCCGTCTAAATATCTCATTCAGGGAGCTTTGGCAGAATCTGAACATGTCATGGTTTCTGTGATCTGTCATCATCATATCTGCTGGTTAAAGTTACATAATTTGCTTATCTCTTTCTTTTGACAGATACTTCTCGGCACCAGCAATGGAAACTGAGAAAACTAAACAAGATACGCTGTTCAAAACTATCCTCAAAGAAGCTGTCACATTTCACTTTTGGAATGGCTTAACTTCAGCTATGGTTCCAGAGGCTGGCAGCCTTGCACACCGGCTCATTAATTACAATTGCCTACGTTGCTCTGACACATTGTGAAACACCATTAAAGCAGATGGATGACCTTTTAAAGCATTTTTGTTTTCATGCCATTAGATATACCTCACAGCTTTTAAAGATATTCCGGTGGTGCTTCATCCATGAATAATATATAAATTTTTGTTGTACAAAATATGAATCTCCAGTTGGTTGGCTTTCTGGACC-T-TG----T---CTATATTAGTTGTTGTAGATTCCCTCGAGGGACGAATTAAGAGGTCCTGCTTTTTGTAGCTGAGTTCTTACTGTATATT</genome_strand>
        <mrna_strand>TGCTACAGTTTATTGCGGGAGAAGGATAGAAACACAA..........................................................................................CCCTTTTGTAATGGAGTGTTTGAA-G-G----A-GC--CTTATGACGACACACAATTGAGATGGAATGTAGCTGATCTTTTGACAAGAGTTGCTAGTAAATTTTCCGTCAATGGTAATCTTTCCGGTAGAAAGAGGGAGATCAAATTTCAACCCTCGTTTGTTTACTTCCCTATCGGTCATAACAATATTACCAG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATACTTCTCGGCACCAGCAACGGAAACTGAGAAAGCTAAACAAGATACGCTGTTCAAAACTATCCTCAAAGAAGCCGTCACATTTCACTTTTGGAATGGCTTAACTTCGGCTATGGTTCCAGAGGCTGGCAGCCTTGCACACCGGCTCATTAATTACAATTGCCTACGTTGCTCTGACACATTGTGAAACACCATTAAAGCAGATGGATGACCTTTTAAAGCATTTTTGTTTTCATGCCATTAGATATACCTCACAGCTTTTAAAGATATTCCGGTGGTTCTTCATCC-----------AT-AATTTTTGTTGTACAAAATATGAATCTCCAGTTGGTTGCCTTTCTGGACCTTGTGTTTTTAGTCTATATTAGTTGTTGTAGATTCCCTCGAGGGACGAATTAAGAGGTCCTGCTTTTTGTAGCTGAGTTCTTACTGTATATT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0320M09-0CleD/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E282649" ref_strand="+" ref_description="SGN-E282649 [cLER-15-G12]">
      <seq>tgctacagtttattgcgggagaaggatagaaacacaacccttttgtaatggagtgtttgaaggagccttatgacgacacacaattgagatggaatgtagctgatcttttgacaagagttgctagtaaattttccgtcaatggtaatctttccggtagaaagagggagatcaaatttcaaccctcgtttgtttacttccctatcggtcataacaatattaccagatacttctcggcaccagcaacggaaactgagaaagctaaacaagatacgctgttcaaaactatcctcaaagaagccgtcacatttcacttttggaatggcttaacttcggctatggttccagaggctggcagccttgcacaccggctcattaattacaattgcctacgttgctctgacacattgtgaaacaccattaaagcagatggatgaccttttaaagcatttttgttttcatgccattagatatacctcacagcttttaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0320M09-0CleD/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0320M09.4" temp_strand="+" temp_description="C02HBa0320M09.4  AC215438.3 htgs_phase:3 submitted_to_sgn_as:C02HBa0320M09 sequenced_by:kribb upload_account_name:korea">
        <position start="13396" stop="16541"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="13696" g_stop="13732" g_length="37"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="37" r_length="37" r_score="0.946"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="13733" i_stop="13822" i_length="90">
            <donor d_prob="0.314" d_score="0.00"/>
            <acceptor a_prob="0.977" a_score="0.80"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="13823" g_stop="14017" g_length="195"/>
          <reference_exon_boundary r_type="cDNA" r_start="38" r_stop="223" r_length="186" r_score="0.923"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="14018" i_stop="15977" i_length="1960">
            <donor d_prob="0.993" d_score="0.96"/>
            <acceptor a_prob="0.999" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="15978" g_stop="16241" g_length="264"/>
          <reference_exon_boundary r_type="cDNA" r_start="224" r_stop="487" r_length="264" r_score="0.985"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0320M09.4" gen_strand="+" ref_id="SGN-E282649" ref_strand="+">
        <total_alignment_score>0.959</total_alignment_score>
        <cumulative_length_of_scored_exons>496</cumulative_length_of_scored_exons>
        <coverage percentage="1.018" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0320M09.4" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E282649" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="13696" e_stop="13732"/>
          <exon e_start="13823" e_stop="14017"/>
          <exon e_start="15978" e_stop="16241"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGCTACAGTTTATTGCGGGAGAAGGATAGGAAAACAAGTATTCCTAGCAAAAACATATAAATGTAAATTATTTTTCTCTTCTATCTGCCCTATAACCAAGATTCACTTTCTTGTATGTCTTTTGCAGTCCTTTTGTAATGGAGTGTTTGAAGGAGTTTTATGCATCTTATGACGACACACAATTGAGATGGAATGGAGCTGATCTTTTGACAAGAGTTGCTAGTAACTTTTCCGTCAATGGTAATCTTTCCAGTAGAAAGAGGGAGATCAAATTTCAACCCTCGTTTGTTTTCTTCCCCATCGGTCATAACAATATTACCAGGTACCAAACTTAACATCCTTCTTAATCTTGAGGTCAAAAGTATTAAAAGGTGGTACTTAGAATTGTGAGTGCTTAAATTTTTCAGTGAAAGATTTATTATTTATTATTTTGAACGCTTGATTATTGTTCATACCGTTGAATGGGGAAGTGTGTAGGCGGGTTAAGAACTCACACGTCTAGAAGATGAAAGTAGCAGAAGTGTTGAGATGGATGTGTGGGATACTAGGAGAGATATGATCAACAATGAAGACATTTGGGACAAGGCGGGTGTGGCCTCCATGGTGGACCAGATGAGGGAAGTGAGGAAGTGAGGAAGTGATGGTTCGAGCATATGAAGAGGAGATGCACAAATGTCACGCAGAGGAGGTGTGAGAGGTTGACAATTGTGGTTTGAGGAGAGGTAGCGCTAGGCCGAAAAAGTATTAACGAGATGTGATTAGATAAAGCATGACACATTTGCAGCTTATTGAGGACATGTCCCTAGATAAAAAGGTCCAAGATTAAGGTAGAATGCTAGTAGGTAGTCGAGTATTATTAGTAATTTAGTACTACTCTCTTATTATTCTTCAATTTTATTATTGCATGTTGTTTTCTTTGCTTCAGTTATCGTATTTGTGTTGTTGAGATTATTTTCAGCATGGCTTCTTTACTATTGTATCCTCTTTTCAACCTTCTTGAAATGCTTTACTTGAGCTGAGAATCTTCCGTAAACAATCTCTCAACCTACCAAGGTAGGGGTAAAGTTTGCTTACACACCACCCTCCTCAAACCTCACTTGTGGGATTACAGTAGGTATGTTATTGTAGTTGTTGATTATAGCACACATGGCTTTTAGTTCAGAATATGGCTTTAAGAATCTTATCTCTATTTGAAAACTACAGTTGTATGGTTAACAGAACTTAAATATTGCAAATTTTGTCCCAGAACAGGTCACTTGTTCAAAACTTTGAAAACTCAGTCTAGTTAGAGCTTCCTGATTTTAGCAGAACCTTCAAAAAAAAAAAAATGAAATTAAGGAGTGAAATTCTATCTATCCCCCCTGTAAATAGAATTATCCCTCTTAGAGCCCAGCAATTTATCCCTGGATTTCATTAGCTCCCACAATATGGCTTAGAGACCATACATTTGCTTGTGGTTAACCCCCTGACTAAATTGGAGTTTCTGCAACATCTTACTTCATCAAAAATAATAAATTCATCTATCCAAGGACTTGTATTCTCTGAACTGTAAAGCCGGTTGGGAAACTAACCTTGAGTTTCAATGAAAACTGATTCTCGGTTTTTCCAACTTGAATACCTGGTATTATAATGGTCAGCTAATAATTCAACTTGATAATGCTTGAATCAACAAGAGATCTCCTTCTAGTAGAAAAGATGTTGGAAAAGATAAAGGTAAAAATTTGGAAACCCTTACCCCTAACAATCTGATGAATCTGGAGAGAAACACGATTTTTCTGAAAGCAAAAAAGAATATGCAATTAGTGTTATGTACGGATGCATTTCTTCATTGCTTTTTTGGTGTAACATGGCTGATGCAACAGATTTCAGAGCCACAGATAGATTTTTTGAGCTCATTACACAACTTATATATTGATGTTGTTCTTGTAAATATTTTAAACACACCCCATGTGACTAGCTGTGAGAGTAAAATATCTTTTTGAGACAAAAAACAGAATGGTCAGCTAATTCCCATCCAATCTTATTTGAAATCTTTGAACTCTCAAAAGGCGACCTTCTATATTTTGGGCTTCATTAGAGGTCATCTTTTTCACATGGTATTTAAGTGGACCACTGGCTCTTTTAAATGTCCTCTTTTAAAAAGTTTTTGAGTCCTTGATCCGTCTAAATATCTCATTCAGGGAGCTTTGGCAGAATCTGAACATGTCATGGTTTCTGTGATCTGTCATCATCATATCTGCTGGTTAAAGTTACATAATTTGCTTATCTCTTTCTTTTGACAGATACTTCTCGGCACCAGCAATGGAAACTGAGAAAACTAAACAAGATACGCTGTTCAAAACTATCCTCAAAGAAGCTGTCACATTTCACTTTTGGAATGGCTTAACTTCAGCTATGGTTCCAGAGGCTGGCAGCCTTGCACACCGGCTCATTAATTACAATTGCCTACGTTGCTCTGACACATTGTGAAACACCATTAAAGCAGATGGATGACCTTTTAAAGCATTTTTGTTTTCATGCCATTAGATATACCTCACAGCTTTTAA</genome_strand>
        <mrna_strand>TGCTACAGTTTATTGCGGGAGAAGGATAGAAACACAA..........................................................................................CCCTTTTGTAATGGAGTGTTTGAA-G-G----A-GC--CTTATGACGACACACAATTGAGATGGAATGTAGCTGATCTTTTGACAAGAGTTGCTAGTAAATTTTCCGTCAATGGTAATCTTTCCGGTAGAAAGAGGGAGATCAAATTTCAACCCTCGTTTGTTTACTTCCCTATCGGTCATAACAATATTACCAG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATACTTCTCGGCACCAGCAACGGAAACTGAGAAAGCTAAACAAGATACGCTGTTCAAAACTATCCTCAAAGAAGCCGTCACATTTCACTTTTGGAATGGCTTAACTTCGGCTATGGTTCCAGAGGCTGGCAGCCTTGCACACCGGCTCATTAATTACAATTGCCTACGTTGCTCTGACACATTGTGAAACACCATTAAAGCAGATGGATGACCTTTTAAAGCATTTTTGTTTTCATGCCATTAGATATACCTCACAGCTTTTAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0320M09-0CleD/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E371472" ref_strand="+" ref_description="SGN-E371472 [TUS-29-P14](-)">
      <seq>cagtttattgcgggaaaaggatagaaacacaacccttttgtaatggagtgtttgaaggagccttatgacgacacacaattgagatggaatgtagctgatcttttgacaagagttgctagtaaattttccgtcaatggtaatctttccggtagaaagagggagatcaaatttcaaccctcgtttgtttacttccctatcggtcataacaatattaccagatacttctcggcaccagcaacggaaactgagaaagctaaacaagatacgctgttcaaaactatcctcaaagaagccgtcacatttcacttttggaatggcttaacttcggctatggttccagaggctggcagccttgcacaccggctcattaattacaattgcctacgttgctctgacacattgtgaaacaccattaaagcagatggatgaccttttaaagcatttttgttttcatgccattagatatacctcacagcttttaaagatattccggtggttcttcatccataatttttgttgtacaaaatatgaatctccagttggttgcctttctggaccttgtgtttttagtctatattagttgttgtagattccctcgagggacgaattaagaggtcctgctttttgtagctgagttcttactgtatatttccccttgtgagttttgtagaactatttgtagtcattggcaacaggacaatgatatatttaaatgatgttcttgtatgtaaccaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0320M09-0CleD/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0320M09.4" temp_strand="+" temp_description="C02HBa0320M09.4  AC215438.3 htgs_phase:3 submitted_to_sgn_as:C02HBa0320M09 sequenced_by:kribb upload_account_name:korea">
        <position start="13520" stop="16790"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="13701" g_stop="13732" g_length="32"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="32" r_length="32" r_score="0.906"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="13733" i_stop="13822" i_length="90">
            <donor d_prob="0.314" d_score="0.00"/>
            <acceptor a_prob="0.977" a_score="0.80"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="13823" g_stop="14017" g_length="195"/>
          <reference_exon_boundary r_type="cDNA" r_start="33" r_stop="218" r_length="186" r_score="0.923"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="14018" i_stop="15977" i_length="1960">
            <donor d_prob="0.993" d_score="0.96"/>
            <acceptor a_prob="0.999" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="15978" g_stop="16490" g_length="513"/>
          <reference_exon_boundary r_type="cDNA" r_start="219" r_stop="728" r_length="510" r_score="0.930"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0320M09.4" gen_strand="+" ref_id="SGN-E371472" ref_strand="+">
        <total_alignment_score>0.928</total_alignment_score>
        <cumulative_length_of_scored_exons>740</cumulative_length_of_scored_exons>
        <coverage percentage="0.997" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0320M09.4" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E371472" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="13701" e_stop="13732"/>
          <exon e_start="13823" e_stop="14017"/>
          <exon e_start="15978" e_stop="16490"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAGTTTATTGCGGGAGAAGGATAGGAAAACAAGTATTCCTAGCAAAAACATATAAATGTAAATTATTTTTCTCTTCTATCTGCCCTATAACCAAGATTCACTTTCTTGTATGTCTTTTGCAGTCCTTTTGTAATGGAGTGTTTGAAGGAGTTTTATGCATCTTATGACGACACACAATTGAGATGGAATGGAGCTGATCTTTTGACAAGAGTTGCTAGTAACTTTTCCGTCAATGGTAATCTTTCCAGTAGAAAGAGGGAGATCAAATTTCAACCCTCGTTTGTTTTCTTCCCCATCGGTCATAACAATATTACCAGGTACCAAACTTAACATCCTTCTTAATCTTGAGGTCAAAAGTATTAAAAGGTGGTACTTAGAATTGTGAGTGCTTAAATTTTTCAGTGAAAGATTTATTATTTATTATTTTGAACGCTTGATTATTGTTCATACCGTTGAATGGGGAAGTGTGTAGGCGGGTTAAGAACTCACACGTCTAGAAGATGAAAGTAGCAGAAGTGTTGAGATGGATGTGTGGGATACTAGGAGAGATATGATCAACAATGAAGACATTTGGGACAAGGCGGGTGTGGCCTCCATGGTGGACCAGATGAGGGAAGTGAGGAAGTGAGGAAGTGATGGTTCGAGCATATGAAGAGGAGATGCACAAATGTCACGCAGAGGAGGTGTGAGAGGTTGACAATTGTGGTTTGAGGAGAGGTAGCGCTAGGCCGAAAAAGTATTAACGAGATGTGATTAGATAAAGCATGACACATTTGCAGCTTATTGAGGACATGTCCCTAGATAAAAAGGTCCAAGATTAAGGTAGAATGCTAGTAGGTAGTCGAGTATTATTAGTAATTTAGTACTACTCTCTTATTATTCTTCAATTTTATTATTGCATGTTGTTTTCTTTGCTTCAGTTATCGTATTTGTGTTGTTGAGATTATTTTCAGCATGGCTTCTTTACTATTGTATCCTCTTTTCAACCTTCTTGAAATGCTTTACTTGAGCTGAGAATCTTCCGTAAACAATCTCTCAACCTACCAAGGTAGGGGTAAAGTTTGCTTACACACCACCCTCCTCAAACCTCACTTGTGGGATTACAGTAGGTATGTTATTGTAGTTGTTGATTATAGCACACATGGCTTTTAGTTCAGAATATGGCTTTAAGAATCTTATCTCTATTTGAAAACTACAGTTGTATGGTTAACAGAACTTAAATATTGCAAATTTTGTCCCAGAACAGGTCACTTGTTCAAAACTTTGAAAACTCAGTCTAGTTAGAGCTTCCTGATTTTAGCAGAACCTTCAAAAAAAAAAAAATGAAATTAAGGAGTGAAATTCTATCTATCCCCCCTGTAAATAGAATTATCCCTCTTAGAGCCCAGCAATTTATCCCTGGATTTCATTAGCTCCCACAATATGGCTTAGAGACCATACATTTGCTTGTGGTTAACCCCCTGACTAAATTGGAGTTTCTGCAACATCTTACTTCATCAAAAATAATAAATTCATCTATCCAAGGACTTGTATTCTCTGAACTGTAAAGCCGGTTGGGAAACTAACCTTGAGTTTCAATGAAAACTGATTCTCGGTTTTTCCAACTTGAATACCTGGTATTATAATGGTCAGCTAATAATTCAACTTGATAATGCTTGAATCAACAAGAGATCTCCTTCTAGTAGAAAAGATGTTGGAAAAGATAAAGGTAAAAATTTGGAAACCCTTACCCCTAACAATCTGATGAATCTGGAGAGAAACACGATTTTTCTGAAAGCAAAAAAGAATATGCAATTAGTGTTATGTACGGATGCATTTCTTCATTGCTTTTTTGGTGTAACATGGCTGATGCAACAGATTTCAGAGCCACAGATAGATTTTTTGAGCTCATTACACAACTTATATATTGATGTTGTTCTTGTAAATATTTTAAACACACCCCATGTGACTAGCTGTGAGAGTAAAATATCTTTTTGAGACAAAAAACAGAATGGTCAGCTAATTCCCATCCAATCTTATTTGAAATCTTTGAACTCTCAAAAGGCGACCTTCTATATTTTGGGCTTCATTAGAGGTCATCTTTTTCACATGGTATTTAAGTGGACCACTGGCTCTTTTAAATGTCCTCTTTTAAAAAGTTTTTGAGTCCTTGATCCGTCTAAATATCTCATTCAGGGAGCTTTGGCAGAATCTGAACATGTCATGGTTTCTGTGATCTGTCATCATCATATCTGCTGGTTAAAGTTACATAATTTGCTTATCTCTTTCTTTTGACAGATACTTCTCGGCACCAGCAATGGAAACTGAGAAAACTAAACAAGATACGCTGTTCAAAACTATCCTCAAAGAAGCTGTCACATTTCACTTTTGGAATGGCTTAACTTCAGCTATGGTTCCAGAGGCTGGCAGCCTTGCACACCGGCTCATTAATTACAATTGCCTACGTTGCTCTGACACATTGTGAAACACCATTAAAGCAGATGGATGACCTTTTAAAGCATTTTTGTTTTCATGCCATTAGATATACCTCACAGCTTTTAAAGATATTCCGGTGGTGCTTCATCCATGAATAATATATAAATTTTTGTTGTACAAAATATGAATCTCCAGTTGGTTGGCTTTCTGGACC--------TT-GTCTATATTAGTTGTTGTAGATTCCCTCGAGGGACGAATTAAGAGGTCCTGCTTTTTGTAGCTGAGTTCTTACTGTATATTTCCCCTTGTGAGTTTTGTAGAACTATTTGTAGTCATTGGCAACAGGACAATGATATATTTAAATGATGTTCTTGTATG</genome_strand>
        <mrna_strand>CAGTTTATTGCGGGAAAAGGATAGAAACACAA..........................................................................................CCCTTTTGTAATGGAGTGTTTGAA-G-G----A-GC--CTTATGACGACACACAATTGAGATGGAATGTAGCTGATCTTTTGACAAGAGTTGCTAGTAAATTTTCCGTCAATGGTAATCTTTCCGGTAGAAAGAGGGAGATCAAATTTCAACCCTCGTTTGTTTACTTCCCTATCGGTCATAACAATATTACCAG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATACTTCTCGGCACCAGCAACGGAAACTGAGAAAGCTAAACAAGATACGCTGTTCAAAACTATCCTCAAAGAAGCCGTCACATTTCACTTTTGGAATGGCTTAACTTCGGCTATGGTTCCAGAGGCTGGCAGCCTTGCACACCGGCTCATTAATTACAATTGCCTACGTTGCTCTGACACATTGTGAAACACCATTAAAGCAGATGGATGACCTTTTAAAGCATTTTTGTTTTCATGCCATTAGATATACCTCACAGCTTTTAAAGATATTCCGGTGGTTCTTCATCC-----------AT-AATTTTTGTTGTACAAAATATGAATCTCCAGTTGGTTGCCTTTCTGGACCTTGTGTTTTTAGTCTATATTAGTTGTTGTAGATTCCCTCGAGGGACGAATTAAGAGGTCCTGCTTTTTGTAGCTGAGTTCTTACTGTATATTTCCCCTTGTGAGTTTTGTAGAACTATTTGTAGTCATTGGCAACAGGACAATGATATATTTAAATGATGTTCTTGTATG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0320M09-0CleD/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E371796" ref_strand="+" ref_description="SGN-E371796 [TUS-30-A17]">
      <seq>agtttattgcgggagaaggatagaaacacaacccttttgtaatggagtgtttgaaggagccttatgacgacacacaatcgagatggaatgtagctgatcttttgacaagagttgctagtaaattttccgtcaatggtaatctttccggtagaaagagggagatcaaatttcaaccctcctttgcttacttccctatcggacataacaatattaccagatacttctccgcaccatctacggacactgagaaagctaaacaagatacgctgttcaaaactatcctcaaagaagccgccacatttgacttttggaatggcttaacttcggctatggttccagaggctggcacccttgctcaccggctcattaattacaattgcctacgttgctctgacacattgagaaacaccattaaagcagatggatgaccttttaaagcattattgttttcatgccattagatatacctcacagctattaaagatattccggtggttctttatacataatatttgttgttcaaaatatgaatctccagttggatgtctttctggaccttgtgttaatagtctatattaggtgttgtagattccctcgagggacgaatta</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0320M09-0CleD/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0320M09.4" temp_strand="+" temp_description="C02HBa0320M09.4  AC215438.3 htgs_phase:3 submitted_to_sgn_as:C02HBa0320M09 sequenced_by:kribb upload_account_name:korea">
        <position start="13402" stop="16672"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="13702" g_stop="13732" g_length="31"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="31" r_length="31" r_score="0.935"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="13733" i_stop="13822" i_length="90">
            <donor d_prob="0.314" d_score="0.00"/>
            <acceptor a_prob="0.977" a_score="0.80"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="13823" g_stop="14017" g_length="195"/>
          <reference_exon_boundary r_type="cDNA" r_start="32" r_stop="217" r_length="186" r_score="0.903"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="14018" i_stop="15977" i_length="1960">
            <donor d_prob="0.993" d_score="0.90"/>
            <acceptor a_prob="0.999" a_score="0.88"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="15978" g_stop="16331" g_length="354"/>
          <reference_exon_boundary r_type="cDNA" r_start="218" r_stop="559" r_length="342" r_score="0.910"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0320M09.4" gen_strand="+" ref_id="SGN-E371796" ref_strand="+">
        <total_alignment_score>0.907</total_alignment_score>
        <cumulative_length_of_scored_exons>580</cumulative_length_of_scored_exons>
        <coverage percentage="0.952" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0320M09.4" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E371796" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="13702" e_stop="13732"/>
          <exon e_start="13823" e_stop="14017"/>
          <exon e_start="15978" e_stop="16331"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGTTTATTGCGGGAGAAGGATAGGAAAACAAGTATTCCTAGCAAAAACATATAAATGTAAATTATTTTTCTCTTCTATCTGCCCTATAACCAAGATTCACTTTCTTGTATGTCTTTTGCAGTCCTTTTGTAATGGAGTGTTTGAAGGAGTTTTATGCATCTTATGACGACACACAATTGAGATGGAATGGAGCTGATCTTTTGACAAGAGTTGCTAGTAACTTTTCCGTCAATGGTAATCTTTCCAGTAGAAAGAGGGAGATCAAATTTCAACCCTCGTTTGTTTTCTTCCCCATCGGTCATAACAATATTACCAGGTACCAAACTTAACATCCTTCTTAATCTTGAGGTCAAAAGTATTAAAAGGTGGTACTTAGAATTGTGAGTGCTTAAATTTTTCAGTGAAAGATTTATTATTTATTATTTTGAACGCTTGATTATTGTTCATACCGTTGAATGGGGAAGTGTGTAGGCGGGTTAAGAACTCACACGTCTAGAAGATGAAAGTAGCAGAAGTGTTGAGATGGATGTGTGGGATACTAGGAGAGATATGATCAACAATGAAGACATTTGGGACAAGGCGGGTGTGGCCTCCATGGTGGACCAGATGAGGGAAGTGAGGAAGTGAGGAAGTGATGGTTCGAGCATATGAAGAGGAGATGCACAAATGTCACGCAGAGGAGGTGTGAGAGGTTGACAATTGTGGTTTGAGGAGAGGTAGCGCTAGGCCGAAAAAGTATTAACGAGATGTGATTAGATAAAGCATGACACATTTGCAGCTTATTGAGGACATGTCCCTAGATAAAAAGGTCCAAGATTAAGGTAGAATGCTAGTAGGTAGTCGAGTATTATTAGTAATTTAGTACTACTCTCTTATTATTCTTCAATTTTATTATTGCATGTTGTTTTCTTTGCTTCAGTTATCGTATTTGTGTTGTTGAGATTATTTTCAGCATGGCTTCTTTACTATTGTATCCTCTTTTCAACCTTCTTGAAATGCTTTACTTGAGCTGAGAATCTTCCGTAAACAATCTCTCAACCTACCAAGGTAGGGGTAAAGTTTGCTTACACACCACCCTCCTCAAACCTCACTTGTGGGATTACAGTAGGTATGTTATTGTAGTTGTTGATTATAGCACACATGGCTTTTAGTTCAGAATATGGCTTTAAGAATCTTATCTCTATTTGAAAACTACAGTTGTATGGTTAACAGAACTTAAATATTGCAAATTTTGTCCCAGAACAGGTCACTTGTTCAAAACTTTGAAAACTCAGTCTAGTTAGAGCTTCCTGATTTTAGCAGAACCTTCAAAAAAAAAAAAATGAAATTAAGGAGTGAAATTCTATCTATCCCCCCTGTAAATAGAATTATCCCTCTTAGAGCCCAGCAATTTATCCCTGGATTTCATTAGCTCCCACAATATGGCTTAGAGACCATACATTTGCTTGTGGTTAACCCCCTGACTAAATTGGAGTTTCTGCAACATCTTACTTCATCAAAAATAATAAATTCATCTATCCAAGGACTTGTATTCTCTGAACTGTAAAGCCGGTTGGGAAACTAACCTTGAGTTTCAATGAAAACTGATTCTCGGTTTTTCCAACTTGAATACCTGGTATTATAATGGTCAGCTAATAATTCAACTTGATAATGCTTGAATCAACAAGAGATCTCCTTCTAGTAGAAAAGATGTTGGAAAAGATAAAGGTAAAAATTTGGAAACCCTTACCCCTAACAATCTGATGAATCTGGAGAGAAACACGATTTTTCTGAAAGCAAAAAAGAATATGCAATTAGTGTTATGTACGGATGCATTTCTTCATTGCTTTTTTGGTGTAACATGGCTGATGCAACAGATTTCAGAGCCACAGATAGATTTTTTGAGCTCATTACACAACTTATATATTGATGTTGTTCTTGTAAATATTTTAAACACACCCCATGTGACTAGCTGTGAGAGTAAAATATCTTTTTGAGACAAAAAACAGAATGGTCAGCTAATTCCCATCCAATCTTATTTGAAATCTTTGAACTCTCAAAAGGCGACCTTCTATATTTTGGGCTTCATTAGAGGTCATCTTTTTCACATGGTATTTAAGTGGACCACTGGCTCTTTTAAATGTCCTCTTTTAAAAAGTTTTTGAGTCCTTGATCCGTCTAAATATCTCATTCAGGGAGCTTTGGCAGAATCTGAACATGTCATGGTTTCTGTGATCTGTCATCATCATATCTGCTGGTTAAAGTTACATAATTTGCTTATCTCTTTCTTTTGACAGATACTTCTCGGCACCAGCAATGGAAACTGAGAAAACTAAACAAGATACGCTGTTCAAAACTATCCTCAAAGAAGCTGTCACATTTCACTTTTGGAATGGCTTAACTTCAGCTATGGTTCCAGAGGCTGGCAGCCTTGCACACCGGCTCATTAATTACAATTGCCTACGTTGCTCTGACACATTGTGAAACACCATTAAAGCAGATGGATGACCTTTTAAAGCATTTTTGTTTTCATGCCATTAGATATACCTCACAGCTTTTAAAGATATTCCGGTGGTGCTTCATCCATGAATAATATATAAATTTTTGTTGTACAAAATATGAATCTCCAGTTGGTTGGCTTTCTGGACCTT</genome_strand>
        <mrna_strand>AGTTTATTGCGGGAGAAGGATAGAAACACAA..........................................................................................CCCTTTTGTAATGGAGTGTTTGAA-G-G----A-GC--CTTATGACGACACACAATCGAGATGGAATGTAGCTGATCTTTTGACAAGAGTTGCTAGTAAATTTTCCGTCAATGGTAATCTTTCCGGTAGAAAGAGGGAGATCAAATTTCAACCCTCCTTTGCTTACTTCCCTATCGGACATAACAATATTACCAG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATACTTCTCCGCACCATCTACGGACACTGAGAAAGCTAAACAAGATACGCTGTTCAAAACTATCCTCAAAGAAGCCGCCACATTTGACTTTTGGAATGGCTTAACTTCGGCTATGGTTCCAGAGGCTGGCACCCTTGCTCACCGGCTCATTAATTACAATTGCCTACGTTGCTCTGACACATTGAGAAACACCATTAAAGCAGATGGATGACCTTTTAAAGCATTATTGTTTTCATGCCATTAGATATACCTCACAGCTATTAAAGATATTCCGGT-G-G-TTC-T---T---T-ATACAT-AATATTTGTTGTTCAAAATATGAATCTCCAGTTGGATGTCTTTCTGGACCTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0320M09-0CleD/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E371096" ref_strand="+" ref_description="SGN-E371096 [TUS-29-P13](-)">
      <seq>ggagccttatgacgacacacaattgagatggaatgtagctgatcttttgacaagagttgctagtaaattttccgtcaatggtaatctttccggtagaaagagggagatcaaatttcaaccctcgtttgtttacttccctatcggtcataacaatattaccagatacttctcggcaccagcaacggaaactgagaaagctaaacaagatacgctgttcaaaactatcctcaaagaagccgtcacatttcacttttggaatggcttaacttcggctatggttccagaggctggcagccttgcacaccggctcattaattacaattgcctacgttgctctgacacattgtgaaacaccattaaagcagatggatgaccttttaaagcatttttgttttcatgccattagatatacctcacagcttttaaagatattccggtggttcttcatccataatttttgttgtacaaaatatgaatctccagttggttgcctttctggaccttgtgtttttagtctatattagttgttgtagattccctcgagggacgaattaagaggtcctgctttttgtagctgagttcttactgtatatttccccttgtgagttttgtagaactatttgtagtcattggcaacaggacaatgatatatttaaatgatgttcttgtatgtaaccaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0320M09-0CleD/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0320M09.4" temp_strand="+" temp_description="C02HBa0320M09.4  AC215438.3 htgs_phase:3 submitted_to_sgn_as:C02HBa0320M09 sequenced_by:kribb upload_account_name:korea">
        <position start="13561" stop="16790"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="13856" g_stop="14017" g_length="162"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="162" r_length="162" r_score="0.944"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="14018" i_stop="15977" i_length="1960">
            <donor d_prob="0.993" d_score="0.96"/>
            <acceptor a_prob="0.999" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="15978" g_stop="16490" g_length="513"/>
          <reference_exon_boundary r_type="cDNA" r_start="163" r_stop="672" r_length="510" r_score="0.930"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0320M09.4" gen_strand="+" ref_id="SGN-E371096" ref_strand="+">
        <total_alignment_score>0.933</total_alignment_score>
        <cumulative_length_of_scored_exons>675</cumulative_length_of_scored_exons>
        <coverage percentage="0.984" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0320M09.4" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E371096" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="13856" e_stop="14017"/>
          <exon e_start="15978" e_stop="16490"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGCATCTTATGACGACACACAATTGAGATGGAATGGAGCTGATCTTTTGACAAGAGTTGCTAGTAACTTTTCCGTCAATGGTAATCTTTCCAGTAGAAAGAGGGAGATCAAATTTCAACCCTCGTTTGTTTTCTTCCCCATCGGTCATAACAATATTACCAGGTACCAAACTTAACATCCTTCTTAATCTTGAGGTCAAAAGTATTAAAAGGTGGTACTTAGAATTGTGAGTGCTTAAATTTTTCAGTGAAAGATTTATTATTTATTATTTTGAACGCTTGATTATTGTTCATACCGTTGAATGGGGAAGTGTGTAGGCGGGTTAAGAACTCACACGTCTAGAAGATGAAAGTAGCAGAAGTGTTGAGATGGATGTGTGGGATACTAGGAGAGATATGATCAACAATGAAGACATTTGGGACAAGGCGGGTGTGGCCTCCATGGTGGACCAGATGAGGGAAGTGAGGAAGTGAGGAAGTGATGGTTCGAGCATATGAAGAGGAGATGCACAAATGTCACGCAGAGGAGGTGTGAGAGGTTGACAATTGTGGTTTGAGGAGAGGTAGCGCTAGGCCGAAAAAGTATTAACGAGATGTGATTAGATAAAGCATGACACATTTGCAGCTTATTGAGGACATGTCCCTAGATAAAAAGGTCCAAGATTAAGGTAGAATGCTAGTAGGTAGTCGAGTATTATTAGTAATTTAGTACTACTCTCTTATTATTCTTCAATTTTATTATTGCATGTTGTTTTCTTTGCTTCAGTTATCGTATTTGTGTTGTTGAGATTATTTTCAGCATGGCTTCTTTACTATTGTATCCTCTTTTCAACCTTCTTGAAATGCTTTACTTGAGCTGAGAATCTTCCGTAAACAATCTCTCAACCTACCAAGGTAGGGGTAAAGTTTGCTTACACACCACCCTCCTCAAACCTCACTTGTGGGATTACAGTAGGTATGTTATTGTAGTTGTTGATTATAGCACACATGGCTTTTAGTTCAGAATATGGCTTTAAGAATCTTATCTCTATTTGAAAACTACAGTTGTATGGTTAACAGAACTTAAATATTGCAAATTTTGTCCCAGAACAGGTCACTTGTTCAAAACTTTGAAAACTCAGTCTAGTTAGAGCTTCCTGATTTTAGCAGAACCTTCAAAAAAAAAAAAATGAAATTAAGGAGTGAAATTCTATCTATCCCCCCTGTAAATAGAATTATCCCTCTTAGAGCCCAGCAATTTATCCCTGGATTTCATTAGCTCCCACAATATGGCTTAGAGACCATACATTTGCTTGTGGTTAACCCCCTGACTAAATTGGAGTTTCTGCAACATCTTACTTCATCAAAAATAATAAATTCATCTATCCAAGGACTTGTATTCTCTGAACTGTAAAGCCGGTTGGGAAACTAACCTTGAGTTTCAATGAAAACTGATTCTCGGTTTTTCCAACTTGAATACCTGGTATTATAATGGTCAGCTAATAATTCAACTTGATAATGCTTGAATCAACAAGAGATCTCCTTCTAGTAGAAAAGATGTTGGAAAAGATAAAGGTAAAAATTTGGAAACCCTTACCCCTAACAATCTGATGAATCTGGAGAGAAACACGATTTTTCTGAAAGCAAAAAAGAATATGCAATTAGTGTTATGTACGGATGCATTTCTTCATTGCTTTTTTGGTGTAACATGGCTGATGCAACAGATTTCAGAGCCACAGATAGATTTTTTGAGCTCATTACACAACTTATATATTGATGTTGTTCTTGTAAATATTTTAAACACACCCCATGTGACTAGCTGTGAGAGTAAAATATCTTTTTGAGACAAAAAACAGAATGGTCAGCTAATTCCCATCCAATCTTATTTGAAATCTTTGAACTCTCAAAAGGCGACCTTCTATATTTTGGGCTTCATTAGAGGTCATCTTTTTCACATGGTATTTAAGTGGACCACTGGCTCTTTTAAATGTCCTCTTTTAAAAAGTTTTTGAGTCCTTGATCCGTCTAAATATCTCATTCAGGGAGCTTTGGCAGAATCTGAACATGTCATGGTTTCTGTGATCTGTCATCATCATATCTGCTGGTTAAAGTTACATAATTTGCTTATCTCTTTCTTTTGACAGATACTTCTCGGCACCAGCAATGGAAACTGAGAAAACTAAACAAGATACGCTGTTCAAAACTATCCTCAAAGAAGCTGTCACATTTCACTTTTGGAATGGCTTAACTTCAGCTATGGTTCCAGAGGCTGGCAGCCTTGCACACCGGCTCATTAATTACAATTGCCTACGTTGCTCTGACACATTGTGAAACACCATTAAAGCAGATGGATGACCTTTTAAAGCATTTTTGTTTTCATGCCATTAGATATACCTCACAGCTTTTAAAGATATTCCGGTGGTGCTTCATCCATGAATAATATATAAATTTTTGTTGTACAAAATATGAATCTCCAGTTGGTTGGCTTTCTGGACC--------TT-GTCTATATTAGTTGTTGTAGATTCCCTCGAGGGACGAATTAAGAGGTCCTGCTTTTTGTAGCTGAGTTCTTACTGTATATTTCCCCTTGTGAGTTTTGTAGAACTATTTGTAGTCATTGGCAACAGGACAATGATATATTTAAATGATGTTCTTGTATG</genome_strand>
        <mrna_strand>GGAGCCTTATGACGACACACAATTGAGATGGAATGTAGCTGATCTTTTGACAAGAGTTGCTAGTAAATTTTCCGTCAATGGTAATCTTTCCGGTAGAAAGAGGGAGATCAAATTTCAACCCTCGTTTGTTTACTTCCCTATCGGTCATAACAATATTACCAG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATACTTCTCGGCACCAGCAACGGAAACTGAGAAAGCTAAACAAGATACGCTGTTCAAAACTATCCTCAAAGAAGCCGTCACATTTCACTTTTGGAATGGCTTAACTTCGGCTATGGTTCCAGAGGCTGGCAGCCTTGCACACCGGCTCATTAATTACAATTGCCTACGTTGCTCTGACACATTGTGAAACACCATTAAAGCAGATGGATGACCTTTTAAAGCATTTTTGTTTTCATGCCATTAGATATACCTCACAGCTTTTAAAGATATTCCGGTGGTTCTTCATCC-----------AT-AATTTTTGTTGTACAAAATATGAATCTCCAGTTGGTTGCCTTTCTGGACCTTGTGTTTTTAGTCTATATTAGTTGTTGTAGATTCCCTCGAGGGACGAATTAAGAGGTCCTGCTTTTTGTAGCTGAGTTCTTACTGTATATTTCCCCTTGTGAGTTTTGTAGAACTATTTGTAGTCATTGGCAACAGGACAATGATATATTTAAATGATGTTCTTGTATG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0320M09-0CleD/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E548273" ref_strand="+" ref_description="SGN-E548273 [TUS-59-K24](-)">
      <seq>tagctgtgagagtaaaatactttttaagacaaaaaacagaatgtncagctaattcccatccaatcttatttgaaatctttgaactctcaaaggcggccttctatattttgggcttcattagaggtcatctttttcacatggtatttaagtggaccactggctcttttaaaaagtttttgagtccttggtccgttatctcattcagggagctttggcagaatctaaacatgtcatggtttctgtgatctgtcatcatcatatctgctggttaaagttacataatctgcttatctctttcttttgacagatacttctcggcaccagcaacggaaactgagaaagctaaacaagatacgctgttcaaaactatcctcaaagaagccgtcacatttcacttttggaatggcttaacttcggctatggttccagaggctggcagccttgcacaccggctcattaattacaattgcctacgttgctctgacacattgtgaaacaccattaaagcagatggatgaccttttaaagcatttttgttttcatgccattagatatacctcacagcttttaaagatattccggtggttcttcatccataatttttgttgtacaaaatatgaatctccagttggttgcctttctggaccttgtgtttttagtctatattagttgttgtagattccctcgagggacgaattaagaggtcctgctttttgtagctgagttcttactgtatatttccccttgtgagttttgtagaactatttgtagtcattggcaacaggacaatgatatatttaaatgatgttcttgtatgtaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0320M09-0CleD/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0320M09.4" temp_strand="+" temp_description="C02HBa0320M09.4  AC215438.3 htgs_phase:3 submitted_to_sgn_as:C02HBa0320M09 sequenced_by:kribb upload_account_name:korea">
        <position start="15350" stop="16790"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="15650" g_stop="16490" g_length="841"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="817" r_length="817" r_score="0.924"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="819" polyA_stop="833"/>
      <MATCH_line gen_id="C02HBa0320M09.4" gen_strand="+" ref_id="SGN-E548273" ref_strand="+">
        <total_alignment_score>0.924</total_alignment_score>
        <cumulative_length_of_scored_exons>841</cumulative_length_of_scored_exons>
        <coverage percentage="1.010" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0320M09.4" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E548273" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="15650" e_stop="16490"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TAGCTGTGAGAGTAAAATATCTTTTTGAGACAAAAAACAGAATGGTCAGCTAATTCCCATCCAATCTTATTTGAAATCTTTGAACTCTCAAAAGGCGACCTTCTATATTTTGGGCTTCATTAGAGGTCATCTTTTTCACATGGTATTTAAGTGGACCACTGGCTCTTTTAAATGTCCTCTTTTAAAAAGTTTTTGAGTCCTTGATCCGTCTAAATATCTCATTCAGGGAGCTTTGGCAGAATCTGAACATGTCATGGTTTCTGTGATCTGTCATCATCATATCTGCTGGTTAAAGTTACATAATTTGCTTATCTCTTTCTTTTGACAGATACTTCTCGGCACCAGCAATGGAAACTGAGAAAACTAAACAAGATACGCTGTTCAAAACTATCCTCAAAGAAGCTGTCACATTTCACTTTTGGAATGGCTTAACTTCAGCTATGGTTCCAGAGGCTGGCAGCCTTGCACACCGGCTCATTAATTACAATTGCCTACGTTGCTCTGACACATTGTGAAACACCATTAAAGCAGATGGATGACCTTTTAAAGCATTTTTGTTTTCATGCCATTAGATATACCTCACAGCTTTTAAAGATATTCCGGTGGTGCTTCATCCATGAATAATATATAAATTTTTGTTGTACAAAATATGAATCTCCAGTTGGTTGGCTTTCTGGACC--------TT-GTCTATATTAGTTGTTGTAGATTCCCTCGAGGGACGAATTAAGAGGTCCTGCTTTTTGTAGCTGAGTTCTTACTGTATATTTCCCCTTGTGAGTTTTGTAGAACTATTTGTAGTCATTGGCAACAGGACAATGATATATTTAAATGATGTTCTTGTATG</genome_strand>
        <mrna_strand>TAGCTGTGAGAGTAAAATA-CTTTTTAAGACAAAAAACAGAATGTNCAGCTAATTCCCATCCAATCTTATTTGAAATCTTTGAACTCTC-AAAGGCGGCCTTCTATATTTTGGGCTTCATTAGAGGTCATCTTTTTCACATGGTATTTAAGTGGACCACT-G-----------G--CTCTTTTAAAAAGTTTTTGAGTCCTTGGTCCG--T---TATCTCATTCAGGGAGCTTTGGCAGAATCTAAACATGTCATGGTTTCTGTGATCTGTCATCATCATATCTGCTGGTTAAAGTTACATAATCTGCTTATCTCTTTCTTTTGACAGATACTTCTCGGCACCAGCAACGGAAACTGAGAAAGCTAAACAAGATACGCTGTTCAAAACTATCCTCAAAGAAGCCGTCACATTTCACTTTTGGAATGGCTTAACTTCGGCTATGGTTCCAGAGGCTGGCAGCCTTGCACACCGGCTCATTAATTACAATTGCCTACGTTGCTCTGACACATTGTGAAACACCATTAAAGCAGATGGATGACCTTTTAAAGCATTTTTGTTTTCATGCCATTAGATATACCTCACAGCTTTTAAAGATATTCCGGTGGTTCTTCATCC-----------AT-AATTTTTGTTGTACAAAATATGAATCTCCAGTTGGTTGCCTTTCTGGACCTTGTGTTTTTAGTCTATATTAGTTGTTGTAGATTCCCTCGAGGGACGAATTAAGAGGTCCTGCTTTTTGTAGCTGAGTTCTTACTGTATATTTCCCCTTGTGAGTTTTGTAGAACTATTTGTAGTCATTGGCAACAGGACAATGATATATTTAAATGATGTTCTTGTATG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0320M09-0CleD/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E243215" ref_strand="+" ref_description="SGN-E243215 [cLEE-2-E2]">
      <seq>ttattgtagatgaccaattttttcttcgaatacgaaattaaattacaatacacacaaaaaaaatatttgaattttttttatttaaactaaggaatgaaagaaaaaaacaaaataagaataagaaactcaaattattataataaaagaagtcaaaaaataatttttgtatgaaaaaattaaaatataccttgaactttgatagaagaatcatatatatccctaaatattttttttaaaaaaaaattagaagtaacaaatataaatttaaaactaattttttaactttcgttaaatgaagggtatatgtgagccattttctaacggcaggggtatatgtgagccgtttgtataacgataagggcatatatgaaccacttttattacgagggatatatcagctctaaatgacaaagttgagaggtatatcagacccttttccctattttttaaaatttcatac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0320M09-0CleD/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0320M09.4" temp_strand="-" temp_description="C02HBa0320M09.4  AC215438.3 htgs_phase:3 submitted_to_sgn_as:C02HBa0320M09 sequenced_by:kribb upload_account_name:korea">
        <position start="29024" stop="27979"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="28724" g_stop="28279" g_length="446"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="447" r_length="447" r_score="0.915"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0320M09.4" gen_strand="-" ref_id="SGN-E243215" ref_strand="+">
        <total_alignment_score>0.915</total_alignment_score>
        <cumulative_length_of_scored_exons>446</cumulative_length_of_scored_exons>
        <coverage percentage="0.970" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0320M09.4" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E243215" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="28724" e_stop="28279"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTATTGTAGATGACCAAATTTTTTATTCTAATACGAAATTAAATAACAATACACAAAAAAAAATAGTTTAAATTTTTTTTCTTTAAACTAAGGAATGAAAGAGAAAAACAAAATAAGAATAAGAAACTCAAATAATTATAATAAAAGAAGTCAAAAATTAATTTATGTATGAAAAAAATTAAAATATACCTTGAACTTTGATAGAAGAATCATATATACCCCTAAATAATTTTTTT--TTAAAAA-TAGAAGCAACAAATATAAATTTGAAACAAATTTTTTAACTTCCGTTAAATGAAGGGTATATGTGAACCATTTTGTAACGGCAGGGGTATATGTGAGCCGTTTGTATAACGGTAAGGGCATATATGTGCCACTTTTATAACGAGGGGTATATCAGCTCTAAATGACAAAGTTGAGGGGTATATCAGACCCTTTTCCCTACTTTT</genome_strand>
        <mrna_strand>TTATTGTAGATGACC-AATTTTTTCTTCGAATACGAAATTAAATTACAATACACACAAAAAAAATATTTGAATTTTTTTTATTTAAACTAAGGAATGAAAGAAAAAAACAAAATAAGAATAAGAAACTCAAATTATTATAATAAAAGAAGTCAAAAAATAATTTTTGTATG-AAAAAATTAAAATATACCTTGAACTTTGATAGAAGAATCATATATATCCCTAAATATTTTTTTTAAAAAAAAATTAGAAGTAACAAATATAAATTTAAAACTAATTTTTTAACTTTCGTTAAATGAAGGGTATATGTGAGCCATTTTCTAACGGCAGGGGTATATGTGAGCCGTTTGTATAACGATAAGGGCATATATGAACCACTTTTATTACGAGGGATATATCAGCTCTAAATGACAAAGTTGAGAGGTATATCAGACCCTTTTCCCTATTTTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0320M09-0CleD/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E541708" ref_strand="+" ref_description="SGN-E541708 [TUS-62-K7](-)">
      <seq>atccagtggtgcattgtgacttgaagccaagtgtcttgcttgatcaagacatggttggccatgtcagtgattttggcattgcaaaattgttaggtgcaggggagagttttgttcaaacaaggacaatagcaaccattggataattgctccagagtatggacaagatggaatcgtatccacaagctgcgatgtttatagtttcggtatcctgattgatggagacgtttacaagaatcagaccaggtgatgaaagatttactggagagttgagcatacgacgttgggttagtgattcttttccagatgagattcataaggtggtggatgctaatttggtacagcctaggggatgaacgaattgacgcaaagatgcagtgtctgttgtctattatagagttagctttgagctgtactttagcaacacctgatgcaagaattagtatggaagattctctttcaacacttcaaaatatcaggctccagtttgtcaatagtcgccaccgaaaaaagcaactgaaggatttagtaccgaaaaaagcaacttgcttggtaatggcaaggtctacaatgtacaattggagggtgcattcaaaagttttgatacagaagaatgtgaaatctgaccaaagtcatcaaagccttaatgttagaatacatgtctagtgggacacttgataaatggctgtactctcacaagttgttcttggatttacttcatattatgtactctttcactttcagtgccagctggaatggtgattttctagctactggagttcacaattctaatccataaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0320M09-0CleD/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0320M09.4" temp_strand="-" temp_description="C02HBa0320M09.4  AC215438.3 htgs_phase:3 submitted_to_sgn_as:C02HBa0320M09 sequenced_by:kribb upload_account_name:korea">
        <position start="41967" stop="3478"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="41667" g_stop="41516" g_length="152"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="152" r_length="152" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="41515" i_stop="41412" i_length="104">
            <donor d_prob="0.773" d_score="1.00"/>
            <acceptor a_prob="0.977" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="41411" g_stop="40764" g_length="648"/>
          <reference_exon_boundary r_type="cDNA" r_start="153" r_stop="800" r_length="648" r_score="0.997"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="40763" i_stop="40059" i_length="705">
            <donor d_prob="0.000" d_score="0.96"/>
            <acceptor a_prob="0.764" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="40058" g_stop="40047" g_length="12"/>
          <reference_exon_boundary r_type="cDNA" r_start="801" r_stop="812" r_length="12" r_score="0.667"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0320M09.4" gen_strand="-" ref_id="SGN-E541708" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>812</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0320M09.4" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E541708" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="41667" e_stop="41516"/>
          <exon e_start="41411" e_stop="40764"/>
          <exon e_start="40058" e_stop="40047"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATCCAGTGGTGCATTGTGACTTGAAGCCAAGTGTCTTGCTTGATCAAGACATGGTTGGCCATGTCAGTGATTTTGGCATTGCAAAATTGTTAGGTGCAGGGGAGAGTTTTGTTCAAACAAGGACAATAGCAACCATTGGATAATTGCTCCAGGTGTTGAAACTTTTACAGCTTCCTCGTGTTTTTAGAATACCCACAACATAATTCTTTTCCCCGATATAGGAAGCTTTTTTGATCATTTTAAACCATGATTGCAGAGTATGGACAAGATGGAATCGTATCCACAAGCTGCGATGTTTATAGTTTCGGTATCCTGATTGATGGAGACGTTTACAAGAATCAGACCAGGTGATGAAAGATTTACTGGAGAGTTGAGCATACGACGTTGGGTTAGTGATTCTTTTCCAGATGAGATTCATAAGGTGGTGGATGCTAATTTGGTACAGCCTAGGGGATGAACGAATTGACGCAAAGATGCAGTGTCTGTTGTCTATTATAGAGTTAGCTTTGAGCTGTACTTTAGCAACACCTGATGCAAGAATTAGTATGGAAGATTCTCTTTCAACACTTCAAAATATCAGGCTCCAGTTTGTCAATAGTCGCCACCGAAAAAAGCAACTGAAGGATTTAGTACCGAAAAAAGCAACTTGCTTGGTAATGGCAAGGTCTACAATGTACAATTGGAGGGTGCATTCAAAAGTTTTGATACAGAAGAATGTGAAATCTGACCAAAGTCATCAAAGCCTTAATGTTAGAATACATGTCTAGTGGGACACTTGATAAATGGCTGTACTCTCACAAGTTGTTCTTGGATTTACTTCATATTATGTACTCTTTCACTTTCAGTGCCAGCTGGAATGGTGATTTTCTAGCTACTGGAGTTCACAATTCTAATCCATAATTAATTGTCTCCTCGATCTCTTCTAGAACAAGTTTTATGACATTTTGGCATGATATACTAGTTAAAACTATATATTTTAACCAAATCAACAATAAAAAAATGGTTGTAACTTTTCAAAGGGGTTGTGACCTTATGTGCATTCTGTTCACACTACCTTTTGTTGTCTATAAATATAAGAATTTCCCATCATTTTAATGCAACTAATTTTCTAGACTTCTTCTTCTACTATTAAATCTGGTACTAGTATTTTAAGTGTATTTTACTTTCACATTTTCTTCCTGTCTACACTTGTTGAATTTTTGGGCTCTTAAAGAATTATCTTGACAATTATTCATTGGGTAGTGGGTGGGATGCAAGTGACAGAAACTAGAAAATAGAAAATACTGTGACACTACAACAAATAAAAGATTTAACAATAATAATATAAATTAACAGTTATGTTATATTTAGCTATGATAATAAATATGATATGTATAACCAACACTCTGGGTGCACTATATTTAACACTCTGAATGCAATGACACTAACTCAATTTTCCATTAAAAGGACAATCTATTGCCTTTAGATATATCTTTTATTGTATGAGCGTTGACCGAGTCTCACAAAGTCAACTTGTAGTACTAAAAGTTAACACACTTAAGTCTTAATCATTGAACTCTCTAGACACTAACTAGTGTACATTGAGTTGCCACACCAATTCTTGTTTTAGGAAAAGGAGAAA</genome_strand>
        <mrna_strand>ATCCAGTGGTGCATTGTGACTTGAAGCCAAGTGTCTTGCTTGATCAAGACATGGTTGGCCATGTCAGTGATTTTGGCATTGCAAAATTGTTAGGTGCAGGGGAGAGTTTTGTTCAAACAAGGACAATAGCAACCATTGGATAATTGCTCCAG........................................................................................................AGTATGGACAAGATGGAATCGTATCCACAAGCTGCGATGTTTATAGTTTCGGTATCCTGATTGATGGAGACGTTTACAAGAATCAGACCAGGTGATGAAAGATTTACTGGAGAGTTGAGCATACGACGTTGGGTTAGTGATTCTTTTCCAGATGAGATTCATAAGGTGGTGGATGCTAATTTGGTACAGCCTAGGGGATGAACGAATTGACGCAAAGATGCAGTGTCTGTTGTCTATTATAGAGTTAGCTTTGAGCTGTACTTTAGCAACACCTGATGCAAGAATTAGTATGGAAGATTCTCTTTCAACACTTCAAAATATCAGGCTCCAGTTTGTCAATAGTCGCCACCGAAAAAAGCAACTGAAGGATTTAGTACCGAAAAAAGCAACTTGCTTGGTAATGGCAAGGTCTACAATGTACAATTGGAGGGTGCATTCAAAAGTTTTGATACAGAAGAATGTGAAATCTGACCAAAGTCATCAAAGCCTTAATGTTAGAATACATGTCTAGTGGGACACTTGATAAATGGCTGTACTCTCACAAGTTGTTCTTGGATTTACTTCATATTATGTACTCTTTCACTTTCAGTGCCAGCTGGAATGGTGATTTTCTAGCTACTGGAGTTCACAATTCTAATCCATAAAAAA.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0320M09-0CleD/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E734152" ref_strand="+" ref_description="SGN-E734152 [LB11DF11]">
      <seq>catttacatacatagtcaagtttcaaccagcttttgggaattctggaagtcacgtgctcatcaaagtaaattttatatacactgatgcaacggtctatctccacaatgggtgttcaaatccagtggtgcattgtgacttgaagccaagtgtcttgcttgatcaagacatggttggccatgtcagtgattttggcattgcaaaattgttaggtgcaggggagagttttgttcaaacaaggacaatagcaaccattggataattgctccagagtatggacaagatggaatcgtatccacaagctgcgatgtttatagtttcggtatcctgattgatggagacgtttacaagaatcagaccaggtgatgaaagatttactggagagttgagcatacgacgttgggttagtgattcttttccagatgagattcataaggtggtggatgctaatttggtacagcctaggggatgaacgaattgacgcaaagatgcagtgtctgttgtctattatagagttagctttgagctgtactttagcaacacctgatgcaagaattagtatggaagattctctttcaacacttcaaaatatcaggctccagtttgtcaatagtcgccaccgaaaaaagcaactgaaggatttagtaccgaaaaaagcaacttgcttggtaatggcaaggtctacaatgtacaattggagggtgcattcaaaagttttgatacagaagaatgtgaaatctgaccaaagtcatcaaagccttaatgttagaatacatgtctagtgggacacttgataaatggctgtactctcacaagttgttcttggatttacttcatattatgtactccttcactttcagtgccagctggaatggtgattttctaactactggaagttcacaattctaatcaataaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0320M09-0CleD/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0320M09.4" temp_strand="-" temp_description="C02HBa0320M09.4  AC215438.3 htgs_phase:3 submitted_to_sgn_as:C02HBa0320M09 sequenced_by:kribb upload_account_name:korea">
        <position start="42080" stop="40464"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="41785" g_stop="41516" g_length="270"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="269" r_length="269" r_score="0.989"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="41515" i_stop="41412" i_length="104">
            <donor d_prob="0.773" d_score="1.00"/>
            <acceptor a_prob="0.977" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="41411" g_stop="40769" g_length="643"/>
          <reference_exon_boundary r_type="cDNA" r_start="270" r_stop="913" r_length="644" r_score="0.992"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="914" polyA_stop="926"/>
      <MATCH_line gen_id="C02HBa0320M09.4" gen_strand="-" ref_id="SGN-E734152" ref_strand="+">
        <total_alignment_score>0.991</total_alignment_score>
        <cumulative_length_of_scored_exons>913</cumulative_length_of_scored_exons>
        <coverage percentage="0.986" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0320M09.4" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E734152" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="41785" e_stop="41516"/>
          <exon e_start="41411" e_stop="40769"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TATCATACATACATAGTCAAGTTTCAACCAGCTTTTGGGAATTCTGGAAGTCACGTGCTCATCAAAGTAAATTTTATATACACTGATGCAACGGTCTATCTCCACAATGGGTGTTCAAATCCAGTGGTGCATTGTGACTTGAAGCCAAGTGTCTTGCTTGATCAAGACATGGTTGGCCATGTCAGTGATTTTGGCATTGCAAAATTGTTAGGTGCAGGGGAGAGTTTTGTTCAAACAAGGACAATAGCAACCATTGGATAATTGCTCCAGGTGTTGAAACTTTTACAGCTTCCTCGTGTTTTTAGAATACCCACAACATAATTCTTTTCCCCGATATAGGAAGCTTTTTTGATCATTTTAAACCATGATTGCAGAGTATGGACAAGATGGAATCGTATCCACAAGCTGCGATGTTTATAGTTTCGGTATCCTGATTGATGGAGACGTTTACAAGAATCAGACCAGGTGATGAAAGATTTACTGGAGAGTTGAGCATACGACGTTGGGTTAGTGATTCTTTTCCAGATGAGATTCATAAGGTGGTGGATGCTAATTTGGTACAGCCTAGGGGATGAACGAATTGACGCAAAGATGCAGTGTCTGTTGTCTATTATAGAGTTAGCTTTGAGCTGTACTTTAGCAACACCTGATGCAAGAATTAGTATGGAAGATTCTCTTTCAACACTTCAAAATATCAGGCTCCAGTTTGTCAATAGTCGCCACCGAAAAAAGCAACTGAAGGATTTAGTACCGAAAAAAGCAACTTGCTTGGTAATGGCAAGGTCTACAATGTACAATTGGAGGGTGCATTCAAAAGTTTTGATACAGAAGAATGTGAAATCTGACCAAAGTCATCAAAGCCTTAATGTTAGAATACATGTCTAGTGGGACACTTGATAAATGGCTGTACTCTCACAAGTTGTTCTTGGATTTACTTCATATTATGTACTCTTTCACTTTCAGTGCCAGCTGGAATGGTGATTTTCTAGCTACTGG-AGTTCACAATTCTAATCCATA</genome_strand>
        <mrna_strand>CAT-TTACATACATAGTCAAGTTTCAACCAGCTTTTGGGAATTCTGGAAGTCACGTGCTCATCAAAGTAAATTTTATATACACTGATGCAACGGTCTATCTCCACAATGGGTGTTCAAATCCAGTGGTGCATTGTGACTTGAAGCCAAGTGTCTTGCTTGATCAAGACATGGTTGGCCATGTCAGTGATTTTGGCATTGCAAAATTGTTAGGTGCAGGGGAGAGTTTTGTTCAAACAAGGACAATAGCAACCATTGGATAATTGCTCCAG........................................................................................................AGTATGGACAAGATGGAATCGTATCCACAAGCTGCGATGTTTATAGTTTCGGTATCCTGATTGATGGAGACGTTTACAAGAATCAGACCAGGTGATGAAAGATTTACTGGAGAGTTGAGCATACGACGTTGGGTTAGTGATTCTTTTCCAGATGAGATTCATAAGGTGGTGGATGCTAATTTGGTACAGCCTAGGGGATGAACGAATTGACGCAAAGATGCAGTGTCTGTTGTCTATTATAGAGTTAGCTTTGAGCTGTACTTTAGCAACACCTGATGCAAGAATTAGTATGGAAGATTCTCTTTCAACACTTCAAAATATCAGGCTCCAGTTTGTCAATAGTCGCCACCGAAAAAAGCAACTGAAGGATTTAGTACCGAAAAAAGCAACTTGCTTGGTAATGGCAAGGTCTACAATGTACAATTGGAGGGTGCATTCAAAAGTTTTGATACAGAAGAATGTGAAATCTGACCAAAGTCATCAAAGCCTTAATGTTAGAATACATGTCTAGTGGGACACTTGATAAATGGCTGTACTCTCACAAGTTGTTCTTGGATTTACTTCATATTATGTACTCCTTCACTTTCAGTGCCAGCTGGAATGGTGATTTTCTAACTACTGGAAGTTCACAATTCTAATCAATA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0320M09-0CleD/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E205032" ref_strand="+" ref_description="SGN-E205032 [cLEC-16-L7]">
      <seq>ggattaaaattggggactccaccaactagaaaatcaccattccaactggcactgaaagtgaaagagtacataatatgaagtaaatccaagaacaacttttgagagtacagccatttatcaagtgtcccactagacatgtattctaacattaaggcttttatgactttggccagatttcacattcttctgtatcaaaacttttaaatgcaccctccaattgtacattgtagaccttgccattaccaagcaagttgctttcttcggcactaaatccttcaattgcttttttcggtggcgactattgacaaactggagcctgatattttgaagtgttgaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0320M09-0CleD/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0320M09.4" temp_strand="+" temp_description="C02HBa0320M09.4  AC215438.3 htgs_phase:3 submitted_to_sgn_as:C02HBa0320M09 sequenced_by:kribb upload_account_name:korea">
        <position start="40472" stop="41408"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="40772" g_stop="41108" g_length="337"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="337" r_length="337" r_score="0.958"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0320M09.4" gen_strand="+" ref_id="SGN-E205032" ref_strand="+">
        <total_alignment_score>0.958</total_alignment_score>
        <cumulative_length_of_scored_exons>337</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0320M09.4" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E205032" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="40772" e_stop="41108"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGATTAGAATTGTGAACTCCAGTAGCTAGAAAATCACCATTCCAGCTGGCACTGAAAGTGAAAGAGTACATAATATGAAGTAAATCCAAGAACAACTTGTGAGAGTACAGCCATTTATCAAGTGTCCCACTAGACATGTATTCTAACATTAAGGCTTTGATGACTTTGGTCAGATTTCACATTCTTCTGTATCAAAACTTTTGAATGCACCCTCCAATTGTACATTGTAGACCTTGCCATTACCAAGCAAGTTGCTTTTTTCGGTACTAAATCCTTCAGTTGCTTTTTTCGGTGGCGACTATTGACAAACTGGAGCCTGATATTTTGAAGTGTTGAA</genome_strand>
        <mrna_strand>GGATTAAAATTGGGGACTCCACCAACTAGAAAATCACCATTCCAACTGGCACTGAAAGTGAAAGAGTACATAATATGAAGTAAATCCAAGAACAACTTTTGAGAGTACAGCCATTTATCAAGTGTCCCACTAGACATGTATTCTAACATTAAGGCTTTTATGACTTTGGCCAGATTTCACATTCTTCTGTATCAAAACTTTTAAATGCACCCTCCAATTGTACATTGTAGACCTTGCCATTACCAAGCAAGTTGCTTTCTTCGGCACTAAATCCTTCAATTGCTTTTTTCGGTGGCGACTATTGACAAACTGGAGCCTGATATTTTGAAGTGTTGAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0320M09-0CleD/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E550567" ref_strand="+" ref_description="SGN-E550567 [TUS-6-D7](-)">
      <seq>cattgcaaaattgttaggtgcaggggagagttttgttcaaacaaggacaatagcaaccattggataattgctccagagtatggacaagatggaatcgtatccacaagctgcgatgtttatagtttcggtatcctgattgatggagacgtttacaagaatcagaccaggtgatgaaagatttactggagagttgagcatacgacgttgggttagtgattcttttccagatgagattcataaggtggtggatgctaatttggtacagcctaggggatgaacgaattgacgcaaagatgcagtgtctgttgtctattatagagttagctttgagctgtactttagcaacacctgatgcaagaattagtatggaagattctctttcaacacttcaaaatatcaggctccagtttgtcaatagtcgccaccgaaaaaagcaactgaaggatttagtaccgaaaaaagcaacttgcttggtaatggcaaggtctacaatgtacaattggagggtgcattcaaaagttttgatacagaagaatgtgaaatctgaccaaagtcatcaaagccttaatgttagaatacatgtctagtgggacacttgataaatggctgtactctcacaagttgttcttggatttacttcatattatgtactctttcacgtacagtgccagctggaatggt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0320M09-0CleD/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0320M09.4" temp_strand="-" temp_description="C02HBa0320M09.4  AC215438.3 htgs_phase:3 submitted_to_sgn_as:C02HBa0320M09 sequenced_by:kribb upload_account_name:korea">
        <position start="52746" stop="40507"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="41591" g_stop="41516" g_length="76"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="76" r_length="76" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="41515" i_stop="41412" i_length="104">
            <donor d_prob="0.773" d_score="1.00"/>
            <acceptor a_prob="0.977" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="41411" g_stop="40807" g_length="605"/>
          <reference_exon_boundary r_type="cDNA" r_start="77" r_stop="681" r_length="605" r_score="0.997"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0320M09.4" gen_strand="-" ref_id="SGN-E550567" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>681</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0320M09.4" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E550567" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="41591" e_stop="41516"/>
          <exon e_start="41411" e_stop="40807"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CATTGCAAAATTGTTAGGTGCAGGGGAGAGTTTTGTTCAAACAAGGACAATAGCAACCATTGGATAATTGCTCCAGGTGTTGAAACTTTTACAGCTTCCTCGTGTTTTTAGAATACCCACAACATAATTCTTTTCCCCGATATAGGAAGCTTTTTTGATCATTTTAAACCATGATTGCAGAGTATGGACAAGATGGAATCGTATCCACAAGCTGCGATGTTTATAGTTTCGGTATCCTGATTGATGGAGACGTTTACAAGAATCAGACCAGGTGATGAAAGATTTACTGGAGAGTTGAGCATACGACGTTGGGTTAGTGATTCTTTTCCAGATGAGATTCATAAGGTGGTGGATGCTAATTTGGTACAGCCTAGGGGATGAACGAATTGACGCAAAGATGCAGTGTCTGTTGTCTATTATAGAGTTAGCTTTGAGCTGTACTTTAGCAACACCTGATGCAAGAATTAGTATGGAAGATTCTCTTTCAACACTTCAAAATATCAGGCTCCAGTTTGTCAATAGTCGCCACCGAAAAAAGCAACTGAAGGATTTAGTACCGAAAAAAGCAACTTGCTTGGTAATGGCAAGGTCTACAATGTACAATTGGAGGGTGCATTCAAAAGTTTTGATACAGAAGAATGTGAAATCTGACCAAAGTCATCAAAGCCTTAATGTTAGAATACATGTCTAGTGGGACACTTGATAAATGGCTGTACTCTCACAAGTTGTTCTTGGATTTACTTCATATTATGTACTCTTTCACTTTCAGTGCCAGCTGGAATGGT</genome_strand>
        <mrna_strand>CATTGCAAAATTGTTAGGTGCAGGGGAGAGTTTTGTTCAAACAAGGACAATAGCAACCATTGGATAATTGCTCCAG........................................................................................................AGTATGGACAAGATGGAATCGTATCCACAAGCTGCGATGTTTATAGTTTCGGTATCCTGATTGATGGAGACGTTTACAAGAATCAGACCAGGTGATGAAAGATTTACTGGAGAGTTGAGCATACGACGTTGGGTTAGTGATTCTTTTCCAGATGAGATTCATAAGGTGGTGGATGCTAATTTGGTACAGCCTAGGGGATGAACGAATTGACGCAAAGATGCAGTGTCTGTTGTCTATTATAGAGTTAGCTTTGAGCTGTACTTTAGCAACACCTGATGCAAGAATTAGTATGGAAGATTCTCTTTCAACACTTCAAAATATCAGGCTCCAGTTTGTCAATAGTCGCCACCGAAAAAAGCAACTGAAGGATTTAGTACCGAAAAAAGCAACTTGCTTGGTAATGGCAAGGTCTACAATGTACAATTGGAGGGTGCATTCAAAAGTTTTGATACAGAAGAATGTGAAATCTGACCAAAGTCATCAAAGCCTTAATGTTAGAATACATGTCTAGTGGGACACTTGATAAATGGCTGTACTCTCACAAGTTGTTCTTGGATTTACTTCATATTATGTACTCTTTCACGTACAGTGCCAGCTGGAATGGT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0320M09-0CleD/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E314138" ref_strand="+" ref_description="SGN-E314138 [cTOA-21-M13]">
      <seq>aattctggaagtcacgtgctcatcaaagtaaattttatatacactgatgcaacggtctatctccacaatgggtgttcaaatccagtggtgcattgtgacttgaagccaagtgtcttgcttgatcaagacatggttggccatgtcagtgattttggcattgcaaaattgttaggtgcaggggagagttttgttcaaacaaggacaatagcaaccattggataattgctccagagtatggacaagatggaatcgtatccacaagctgcgatgtttatagtttcggtatcctgattgatggagacgtttacaagaatcagaccaggtgatgaaagatttactggagagttgagcatacgacgttgggttagtgattcttttccagatgagattcataaggtggtggatgctaatttggtacagcctangggatgaacgaattgacgcaaagatgcagtgtctgttgtctattatagagttagctttgagctgtactttagcaacacctgatg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0320M09-0CleD/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0320M09.4" temp_strand="-" temp_description="C02HBa0320M09.4  AC215438.3 htgs_phase:3 submitted_to_sgn_as:C02HBa0320M09 sequenced_by:kribb upload_account_name:korea">
        <position start="42046" stop="40834"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="41746" g_stop="41516" g_length="231"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="231" r_length="231" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="41515" i_stop="41412" i_length="104">
            <donor d_prob="0.773" d_score="1.00"/>
            <acceptor a_prob="0.977" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="41411" g_stop="41135" g_length="277"/>
          <reference_exon_boundary r_type="cDNA" r_start="232" r_stop="508" r_length="277" r_score="0.996"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0320M09.4" gen_strand="-" ref_id="SGN-E314138" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>508</cumulative_length_of_scored_exons>
        <coverage percentage="0.998" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0320M09.4" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E314138" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="41746" e_stop="41516"/>
          <exon e_start="41411" e_stop="41135"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AATTCTGGAAGTCACGTGCTCATCAAAGTAAATTTTATATACACTGATGCAACGGTCTATCTCCACAATGGGTGTTCAAATCCAGTGGTGCATTGTGACTTGAAGCCAAGTGTCTTGCTTGATCAAGACATGGTTGGCCATGTCAGTGATTTTGGCATTGCAAAATTGTTAGGTGCAGGGGAGAGTTTTGTTCAAACAAGGACAATAGCAACCATTGGATAATTGCTCCAGGTGTTGAAACTTTTACAGCTTCCTCGTGTTTTTAGAATACCCACAACATAATTCTTTTCCCCGATATAGGAAGCTTTTTTGATCATTTTAAACCATGATTGCAGAGTATGGACAAGATGGAATCGTATCCACAAGCTGCGATGTTTATAGTTTCGGTATCCTGATTGATGGAGACGTTTACAAGAATCAGACCAGGTGATGAAAGATTTACTGGAGAGTTGAGCATACGACGTTGGGTTAGTGATTCTTTTCCAGATGAGATTCATAAGGTGGTGGATGCTAATTTGGTACAGCCTAGGGGATGAACGAATTGACGCAAAGATGCAGTGTCTGTTGTCTATTATAGAGTTAGCTTTGAGCTGTACTTTAGCAACACCTGAT</genome_strand>
        <mrna_strand>AATTCTGGAAGTCACGTGCTCATCAAAGTAAATTTTATATACACTGATGCAACGGTCTATCTCCACAATGGGTGTTCAAATCCAGTGGTGCATTGTGACTTGAAGCCAAGTGTCTTGCTTGATCAAGACATGGTTGGCCATGTCAGTGATTTTGGCATTGCAAAATTGTTAGGTGCAGGGGAGAGTTTTGTTCAAACAAGGACAATAGCAACCATTGGATAATTGCTCCAG........................................................................................................AGTATGGACAAGATGGAATCGTATCCACAAGCTGCGATGTTTATAGTTTCGGTATCCTGATTGATGGAGACGTTTACAAGAATCAGACCAGGTGATGAAAGATTTACTGGAGAGTTGAGCATACGACGTTGGGTTAGTGATTCTTTTCCAGATGAGATTCATAAGGTGGTGGATGCTAATTTGGTACAGCCTANGGGATGAACGAATTGACGCAAAGATGCAGTGTCTGTTGTCTATTATAGAGTTAGCTTTGAGCTGTACTTTAGCAACACCTGAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0320M09-0CleD/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E395576" ref_strand="-" ref_description="SGN-E395576 [TUS-16-D20](-)">
      <seq>tttcatggctgaatttctctcttgtgcccacaacgccatcagaatgcagacaataatggcgaagatgaaggtggtgaggagtgaaattgctgcgaaacaagtggttgtgatcgaggaaaatgaggagatacattggtatgcttcttgaatttcgtccggaggacacagctactcaaatccaaatgcaaaggatcttcaagagtaaaggaataaaacaagaccttggttcattgtgaaagttatgtgtgatccatagctgaaagtttggcatttatctcggttttcccttcctatttgattttttttcaataatcgccgttaggtcaattctgctatttaagtcaagtttcaaccagcttttgggaattctggaagtcacgtgctcatcaaagtaaattttatatacactgatgcaacggtctatctccacaatgggtgttcaaatccagtggtgcattgtgacttgaagccaagtgtcttgcttgatcaagacatggttggccatgtcagtgattttggcattgcaaaattgttaggtgcaggggagagttttgttcaaacaaggacaatagcaaccattggataattgctccagagtatggacaagatggaatcgtatccacaagctgcgatgtttatagtttcggtatcctgattgatggaaacttttaca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0320M09-0CleD/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0320M09.4" temp_strand="-" temp_description="C02HBa0320M09.4  AC215438.3 htgs_phase:3 submitted_to_sgn_as:C02HBa0320M09 sequenced_by:kribb upload_account_name:korea">
        <position start="45831" stop="41034"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="45531" g_stop="45485" g_length="47"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="46" r_length="46" r_score="0.979"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="45484" i_stop="45386" i_length="99">
            <donor d_prob="0.353" d_score="0.98"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="45385" g_stop="45264" g_length="122"/>
          <reference_exon_boundary r_type="cDNA" r_start="47" r_stop="168" r_length="122" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="45263" i_stop="43558" i_length="1706">
            <donor d_prob="0.854" d_score="1.00"/>
            <acceptor a_prob="0.987" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="43557" g_stop="43487" g_length="71"/>
          <reference_exon_boundary r_type="cDNA" r_start="169" r_stop="239" r_length="71" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="43486" i_stop="41985" i_length="1502">
            <donor d_prob="0.905" d_score="1.00"/>
            <acceptor a_prob="0.758" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="41984" g_stop="41882" g_length="103"/>
          <reference_exon_boundary r_type="cDNA" r_start="240" r_stop="341" r_length="102" r_score="0.990"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="41881" i_stop="41770" i_length="112">
            <donor d_prob="0.598" d_score="1.00"/>
            <acceptor a_prob="0.027" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="41769" g_stop="41516" g_length="254"/>
          <reference_exon_boundary r_type="cDNA" r_start="342" r_stop="595" r_length="254" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="41515" i_stop="41412" i_length="104">
            <donor d_prob="0.773" d_score="1.00"/>
            <acceptor a_prob="0.977" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="41411" g_stop="41334" g_length="78"/>
          <reference_exon_boundary r_type="cDNA" r_start="596" r_stop="673" r_length="78" r_score="0.974"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0320M09.4" gen_strand="-" ref_id="SGN-E395576" ref_strand="-">
        <total_alignment_score>0.995</total_alignment_score>
        <cumulative_length_of_scored_exons>675</cumulative_length_of_scored_exons>
        <coverage percentage="1.003" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0320M09.4" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E395576" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="45531" e_stop="45485"/>
          <exon e_start="45385" e_stop="45264"/>
          <exon e_start="43557" e_stop="43487"/>
          <exon e_start="41984" e_stop="41882"/>
          <exon e_start="41769" e_stop="41516"/>
          <exon e_start="41411" e_stop="41334"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTCATGGCTGAATTTCTCTCTTGTGCACCACAACGCCATCAGAATGGTGATGTTCCCAATTCCCCTCTCAATGAATTTCCCAATTCCCCATTCAATTTTACTTCTTTTTGGATAAAAAATAATAAGTGTTTGTGTGTGTATGCAGCAGACAATAATGGCGAAGATGAAGGTGGTGAGGAGTGAAATTGCTGCGAAACAAGTGGTTGTGATCGAGGAAAATGAGGAGATACATTGGTATGCTTCTTGAATTTCGTCCGGAGGACACAGGTACTTTTTCCTCTGACTTAGGGTTTGGGGGTTTAGTTCATTGATGGGTTCTTTGCATAATTTACATGAAATCAACTGGTAAGAATTGGGAATTAGCTGTATCAGTTTATGGATCATATAACTTGCAATTGCTAGAGGGTGTTTACCACCGATATGGCTGATAGAAAAGTTTGTTGTGAAGATAATTTTCTATCTTGATCTCTTAATTAGGGAGTGAAATTTTTGTAGGGAATCAAAAACTTGAACAGTAGCTGCAAGTATAGGTTACGGTTGACAGTGATTAAAAAAGAATTTCGGACAAGTGATTAATGTAAGCTTAGATAAGAAGATATGAAGCCAAGAATCATAATAGAGAGTTAGTAGATATTCTCACATATAAAAGGCAATTTTATTCTTCAATCTGTTTGTTACATTATCTGATTTTTATGTCATAATGGTTTCTTGAAACCCTGCTTTGAAGACCTCCAAAACAATCCATGTGTAGTAGAATAAGGTTTGTGTTTCCCACATCCTAATTGTGAAGTTACGTATGTTATTGTTGTAACATAAGAGATGAAGTGCCACAGTCAAACCTTAATTTCTAGCATGGTTTGGCTAGAATGTATTGATTGATTGAATGAGTGATATATAAGCAGACACACAACTAAAAGGTCTTCCAAAAACTTGTTTCGGAATATGAACAGCCAAATACAAGATGTCCGAACAAAAGAAGAGCAGTGAAAGTAGATATTCTGCCATCAGTAAGTACGATTTCATTCCGAATACAGTAGTTACAAAATCCAGCAGCCTCAAGCAGCTCAAATTATGTCGCTACAAGCAGAACTTCTTTTGGGAGTAATTTCCAGTAAAAACAGAAATTCCTAAATAACCTAAATCAATCTAGACATGCATCTGTACAACATATTTAGACAACTATGGTTTGGCTAGATTTTCAGGTAAAGTTGATATTTTGGGGTTTGTTTAGGTCTCTTTTGCTCTTTAGTGTATGCAAACAAGAATTAAAAAAAGAAATCTGGCCTTGCATGTTGAGTCAATCATTTAGCTTGAAATAGAGAATTTTGTTTTACTTCAAGATTGCAGTTTCTCACTGCCACAGCAAGGGTGTTTACCACCGAGATCGCTGAATGGAAAATCTCTTGTATCTTAATGTTTTAACTATTGTTCCTTGTTCCCCAGTCTGAAAATTTGTGCATATAACCTCTGACTTAGGGTTGTGGGGGCCTTGTTGATTGATCAATTTGATTGAATAAATTGTGAACTCTCTCTTGTTATTACTATTTGGAATTTTGCTTTACTTCAAAATTTCCTCCCCAAAAAAATTTCAACAACTCATTGATGCAATTGCTGATTGGCCTGCAATCCACCCAAAACCTTTTTATCATTATACTTTAGATTGCTATCTGAGAGTACTACTTTTCCCATTCTTGATGTCCACATTAATAGCATCAGATTTTTTTAATCTGCAAAGCTTGAATCTGAAAGAGGCATAGGGGTGGTTAGCTCTGTTTTAATTCATTGATCCCTTACCTAACACAATCAGCAAAGATTTTTGATGATTTTTTTGAGTTTGATTGCTCAACATAGATTACAATCCTTCCAATTTCCCAGATCATTTTAAATGTGTGAAATTTCTTAGGGAAGTCTTATGCTCGTTCCTTGATTTGTGTACCTTTTCTAATCTTCTTTTTCTTAATTAATTTGTGAAGCTACTCAAATCCAAATGCAAAGGATCTTCAAGAGTAAAGGAATAAAACAAGACCTTGGTTCATTGTGAAAGGTTTGACTGCCCAACTCAGTTTTTGTTCTGGTCTTCTTTTTGTTACGAATCTGTCGTGATCATTAACAATTTCGGCCTCGGGCAGGGCAGGCAAGAAATCGAGGCAGGTGGCGAGAAGTAGGCGTGGTGGGGGACGGGCGACGGGAATGGGGGTAGGGGGAATGGGAGTGGGCGGGACGTAGGGTCAGGGCGGGGCGAGGACAGGGTTGGGGTCGGGGTCTAGAGGCACCATGCATGCCTTAGGGTCGGGGGGTTGGGCCGAGGAACTGTATGTGCCTCAGGGTTGGGGGCCAGGGGGCGGCACCGAGGAACACGCGTGCCTCATGGTCATGGGTAGGGCGAACCCGAGGCTGTCTTGGGGTCAAGGTGTGGGCGGGGGAGGACCCGAGGAACACGCGTGCCTCGACGGTAGGGGGCGGCCCCGAGGCATGCAAGTGCCTCAGGGTACAAAGAGGCAAAGGCCTGCCTTCGGGTCGTGGGGGGCGGCCCCGGGGCACGCGCGTGCCTCGGGGTCGTTGGAGGGCGGGGGGCGGCCCTAGGGCACGCTCTTGCCTCGGGGTCGAGGTGGGCGGGGGCGGCCTCGGGGCACGCGCTTGCCTTAGGGTCGAGGGGGGCGGGGGGCCTCGGGGCACGTGTCTAGAAGAACTAGTGTATTAATAAGAGTAAGTTTTTCATTTGGCTTTTTGTGTGATTAAAACGCATGGTAGATTTTGTAATTATGTATTATTTTGCATTGTTATGAAAAGAAAAATTCTTTATTTTCGTGTTAAACTTTCAAGTGTTATTTAACTGACAAAATTTCTATTTATACATGATGAGTTTGATAATATTTGAATGTTTTATGCATAATAGTGATGTTAGGGGAAATATATATATTCGTGATATTCACGTGCTTTGTCGAGAACTAGTGCATCATTAATAAGAGTAAGTTTTTCTCGTGAAGCATTTGGCTTTTTGGTTGATTAAAACGCATGGTAGATTTTGTATAACTTTCCATATAAACTTCCTGAAAGCTTTCAAATGCTCCTTTTTTATGTATGAATTTATTTCTAAAAAATGGCTCTGTCCCTGTTGAATCAAGGAGGTTAACATCGAAGCTTAGATATAAGAAAGAACTGTTGTCTGCCTGCCTGCATATTGGTATTTTCTTTTCTTTGTTTTGAATTCATGTCCATTTTCAGTCTCTTCTGAGTATTAAGTAAGTTGGCATCTCTGTTTTATGTATGCTGAGATTGTCCAATGAACCAAATGATTGGGGATATATAGCTATGTATCATCTTCTATATCACTAAGTTAAGGGATGTATCTTCTTTATCACTAAGTTAAGGGTAAGACTCAGTTTTCTTTCTTTAATCGCTATTGATATGTCAATTTCTTTGTGCTAACAATTTCGAGCTCGCCGTGAAATACGGGTGTCCTGTTTGAGTAGTATAAACAGTATGGGTGTCCAGCTGCTGGAATGTGCTATCACTCACCTTCATCTATTTTGTTTGTTTTCTCAGTTTATGTGTGATCCATAGCTGAAAGTTTGGCATTTATCTCGGTTTTCCCTTCCTATTTGATTTTTTTTCAATAATCGCCGTTAGGTCAATTCTGCTATTTAAGGTAAAATCTGATTGATAGATTACGACTTGGAGAAATTTAAAAATCTGACAGTAGTGTCAAAGTAAGAAGTTTTTAACTGACAGAATATTTGAATGGTATCATACATACATAGTCAAGTTTCAACCAGCTTTTGGGAATTCTGGAAGTCACGTGCTCATCAAAGTAAATTTTATATACACTGATGCAACGGTCTATCTCCACAATGGGTGTTCAAATCCAGTGGTGCATTGTGACTTGAAGCCAAGTGTCTTGCTTGATCAAGACATGGTTGGCCATGTCAGTGATTTTGGCATTGCAAAATTGTTAGGTGCAGGGGAGAGTTTTGTTCAAACAAGGACAATAGCAACCATTGGATAATTGCTCCAGGTGTTGAAACTTTTACAGCTTCCTCGTGTTTTTAGAATACCCACAACATAATTCTTTTCCCCGATATAGGAAGCTTTTTTGATCATTTTAAACCATGATTGCAGAGTATGGACAAGATGGAATCGTATCCACAAGCTGCGATGTTTATAGTTTCGGTATCCTGATTGATGGAGACGTTTACA</genome_strand>
        <mrna_strand>TTTCATGGCTGAATTTCTCTCTTGTGC-CCACAACGCCATCAGAATG...................................................................................................CAGACAATAATGGCGAAGATGAAGGTGGTGAGGAGTGAAATTGCTGCGAAACAAGTGGTTGTGATCGAGGAAAATGAGGAGATACATTGGTATGCTTCTTGAATTTCGTCCGGAGGACACAG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTACTCAAATCCAAATGCAAAGGATCTTCAAGAGTAAAGGAATAAAACAAGACCTTGGTTCATTGTGAAAG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................-TTATGTGTGATCCATAGCTGAAAGTTTGGCATTTATCTCGGTTTTCCCTTCCTATTTGATTTTTTTTCAATAATCGCCGTTAGGTCAATTCTGCTATTTAAG................................................................................................................TCAAGTTTCAACCAGCTTTTGGGAATTCTGGAAGTCACGTGCTCATCAAAGTAAATTTTATATACACTGATGCAACGGTCTATCTCCACAATGGGTGTTCAAATCCAGTGGTGCATTGTGACTTGAAGCCAAGTGTCTTGCTTGATCAAGACATGGTTGGCCATGTCAGTGATTTTGGCATTGCAAAATTGTTAGGTGCAGGGGAGAGTTTTGTTCAAACAAGGACAATAGCAACCATTGGATAATTGCTCCAG........................................................................................................AGTATGGACAAGATGGAATCGTATCCACAAGCTGCGATGTTTATAGTTTCGGTATCCTGATTGATGGAAACTTTTACA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0320M09-0CleD/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E548594" ref_strand="+" ref_description="SGN-E548594 [TUS-62-K7]">
      <seq>agtttttcatttggctttttgtgtgattaaaacgcatggtagattttgtaattatgtattattttgcattgttatgaaaagaaaaattctttattttcgtgttaaactttcaagtgttatttaactgacaaaatttctatttatacatgatgagtttgataatatttgaatgttttatgcataatagtgatgttaggggaaatatatatattcgtgatattcacgtgctttgtcgagaactagtgcatcattaataagagtaagtttttctcgtgaagcatttggctttttggttgattaaaacgcatggtagattttgtataactttccatataaacttcctgaaagctttcaaatgctccttttttatgtatgaatttatttctaaaaaatggctctgtccctgttgaatcaaggaggttaacatcgaagcttagatataagaaagaactgttgtctgcctgcctgcatattggtattttcttttctttgttttgaattcatgtccattttcagtctcttctgagtattaagtaagttggcatctctgttttatgtatgctgagattgtccaatgaaccaaatgattggggatatatagctatgtatcatcttctatatcactaagttaagggatgtatcttctttatcactaagttaanggtaagactcagttttctttctttaatcgctattg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0320M09-0CleD/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0320M09.4" temp_strand="-" temp_description="C02HBa0320M09.4  AC215438.3 htgs_phase:3 submitted_to_sgn_as:C02HBa0320M09 sequenced_by:kribb upload_account_name:korea">
        <position start="43121" stop="41825"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="42821" g_stop="42125" g_length="697"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="697" r_length="697" r_score="0.999"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0320M09.4" gen_strand="-" ref_id="SGN-E548594" ref_strand="+">
        <total_alignment_score>0.999</total_alignment_score>
        <cumulative_length_of_scored_exons>697</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0320M09.4" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E548594" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="42821" e_stop="42125"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGTTTTTCATTTGGCTTTTTGTGTGATTAAAACGCATGGTAGATTTTGTAATTATGTATTATTTTGCATTGTTATGAAAAGAAAAATTCTTTATTTTCGTGTTAAACTTTCAAGTGTTATTTAACTGACAAAATTTCTATTTATACATGATGAGTTTGATAATATTTGAATGTTTTATGCATAATAGTGATGTTAGGGGAAATATATATATTCGTGATATTCACGTGCTTTGTCGAGAACTAGTGCATCATTAATAAGAGTAAGTTTTTCTCGTGAAGCATTTGGCTTTTTGGTTGATTAAAACGCATGGTAGATTTTGTATAACTTTCCATATAAACTTCCTGAAAGCTTTCAAATGCTCCTTTTTTATGTATGAATTTATTTCTAAAAAATGGCTCTGTCCCTGTTGAATCAAGGAGGTTAACATCGAAGCTTAGATATAAGAAAGAACTGTTGTCTGCCTGCCTGCATATTGGTATTTTCTTTTCTTTGTTTTGAATTCATGTCCATTTTCAGTCTCTTCTGAGTATTAAGTAAGTTGGCATCTCTGTTTTATGTATGCTGAGATTGTCCAATGAACCAAATGATTGGGGATATATAGCTATGTATCATCTTCTATATCACTAAGTTAAGGGATGTATCTTCTTTATCACTAAGTTAAGGGTAAGACTCAGTTTTCTTTCTTTAATCGCTATTG</genome_strand>
        <mrna_strand>AGTTTTTCATTTGGCTTTTTGTGTGATTAAAACGCATGGTAGATTTTGTAATTATGTATTATTTTGCATTGTTATGAAAAGAAAAATTCTTTATTTTCGTGTTAAACTTTCAAGTGTTATTTAACTGACAAAATTTCTATTTATACATGATGAGTTTGATAATATTTGAATGTTTTATGCATAATAGTGATGTTAGGGGAAATATATATATTCGTGATATTCACGTGCTTTGTCGAGAACTAGTGCATCATTAATAAGAGTAAGTTTTTCTCGTGAAGCATTTGGCTTTTTGGTTGATTAAAACGCATGGTAGATTTTGTATAACTTTCCATATAAACTTCCTGAAAGCTTTCAAATGCTCCTTTTTTATGTATGAATTTATTTCTAAAAAATGGCTCTGTCCCTGTTGAATCAAGGAGGTTAACATCGAAGCTTAGATATAAGAAAGAACTGTTGTCTGCCTGCCTGCATATTGGTATTTTCTTTTCTTTGTTTTGAATTCATGTCCATTTTCAGTCTCTTCTGAGTATTAAGTAAGTTGGCATCTCTGTTTTATGTATGCTGAGATTGTCCAATGAACCAAATGATTGGGGATATATAGCTATGTATCATCTTCTATATCACTAAGTTAAGGGATGTATCTTCTTTATCACTAAGTTAANGGTAAGACTCAGTTTTCTTTCTTTAATCGCTATTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0320M09-0CleD/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E299724" ref_strand="+" ref_description="SGN-E299724 [cLEW-1-B6]">
      <seq>gtttttcatttggctttttgtgtgattaaaacgcatggtagattttgtaattatgtattattttgcattgttatgaaaagaaaaattctttattttcgtgttaaactttcaagtgttatttaactgacaaaatttctatttatacatgatgagtttgataatatttgaatgttttatgcataatagtgatgttaggggaaatatatatattcgtgatattcacgtgctttgtcgagaactagtgcatcattaataagagtaagtttttctcgtgaagcatttggctttttggttgattaaaacgcatggtagattttgtataactttccatataaacttcctgaaagctttcaaatgctccttttttatgtatgaatttatttctaaaaaatggctctgtccctgttgaatcaaggaggttaacatcgaagcttagatataagaaagaactgttgtctgcctgcctgcatattggtattttcttttctttgttttgaattcatgtccattttcagtctcttctg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0320M09-0CleD/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0320M09.4" temp_strand="-" temp_description="C02HBa0320M09.4  AC215438.3 htgs_phase:3 submitted_to_sgn_as:C02HBa0320M09 sequenced_by:kribb upload_account_name:korea">
        <position start="43120" stop="41997"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="42820" g_stop="42297" g_length="524"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="524" r_length="524" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0320M09.4" gen_strand="-" ref_id="SGN-E299724" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>524</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0320M09.4" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E299724" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="42820" e_stop="42297"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTTTTTCATTTGGCTTTTTGTGTGATTAAAACGCATGGTAGATTTTGTAATTATGTATTATTTTGCATTGTTATGAAAAGAAAAATTCTTTATTTTCGTGTTAAACTTTCAAGTGTTATTTAACTGACAAAATTTCTATTTATACATGATGAGTTTGATAATATTTGAATGTTTTATGCATAATAGTGATGTTAGGGGAAATATATATATTCGTGATATTCACGTGCTTTGTCGAGAACTAGTGCATCATTAATAAGAGTAAGTTTTTCTCGTGAAGCATTTGGCTTTTTGGTTGATTAAAACGCATGGTAGATTTTGTATAACTTTCCATATAAACTTCCTGAAAGCTTTCAAATGCTCCTTTTTTATGTATGAATTTATTTCTAAAAAATGGCTCTGTCCCTGTTGAATCAAGGAGGTTAACATCGAAGCTTAGATATAAGAAAGAACTGTTGTCTGCCTGCCTGCATATTGGTATTTTCTTTTCTTTGTTTTGAATTCATGTCCATTTTCAGTCTCTTCTG</genome_strand>
        <mrna_strand>GTTTTTCATTTGGCTTTTTGTGTGATTAAAACGCATGGTAGATTTTGTAATTATGTATTATTTTGCATTGTTATGAAAAGAAAAATTCTTTATTTTCGTGTTAAACTTTCAAGTGTTATTTAACTGACAAAATTTCTATTTATACATGATGAGTTTGATAATATTTGAATGTTTTATGCATAATAGTGATGTTAGGGGAAATATATATATTCGTGATATTCACGTGCTTTGTCGAGAACTAGTGCATCATTAATAAGAGTAAGTTTTTCTCGTGAAGCATTTGGCTTTTTGGTTGATTAAAACGCATGGTAGATTTTGTATAACTTTCCATATAAACTTCCTGAAAGCTTTCAAATGCTCCTTTTTTATGTATGAATTTATTTCTAAAAAATGGCTCTGTCCCTGTTGAATCAAGGAGGTTAACATCGAAGCTTAGATATAAGAAAGAACTGTTGTCTGCCTGCCTGCATATTGGTATTTTCTTTTCTTTGTTTTGAATTCATGTCCATTTTCAGTCTCTTCTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0320M09-0CleD/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E243333" ref_strand="+" ref_description="SGN-E243333 [cLEF-16-E23]">
      <seq>caattcccctttcaatgaatttcccaaatccccattcaattttacttctttttggataaaaaatgataagtgtttgtgtgtgtttgcagcccacaataatggcgaacatgaaggtggtgacgagtgaaattgctgcgaaacatgtggttgagatctaggaaaatgaagagatacattggtatgcttcttgaatttcgtccggaggacaccgctactcaaatccaaatgcaaaggatct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0320M09-0CleD/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0320M09.4" temp_strand="-" temp_description="C02HBa0320M09.4  AC215438.3 htgs_phase:3 submitted_to_sgn_as:C02HBa0320M09 sequenced_by:kribb upload_account_name:korea">
        <position start="45774" stop="43231"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="45474" g_stop="45264" g_length="211"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="211" r_length="211" r_score="0.938"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="45263" i_stop="43558" i_length="1706">
            <donor d_prob="0.854" d_score="0.96"/>
            <acceptor a_prob="0.987" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="43557" g_stop="43531" g_length="27"/>
          <reference_exon_boundary r_type="cDNA" r_start="212" r_stop="238" r_length="27" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0320M09.4" gen_strand="-" ref_id="SGN-E243333" ref_strand="+">
        <total_alignment_score>0.938</total_alignment_score>
        <cumulative_length_of_scored_exons>238</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0320M09.4" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E243333" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="45474" e_stop="45264"/>
          <exon e_start="43557" e_stop="43531"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAATTCCCCTCTCAATGAATTTCCCAATTCCCCATTCAATTTTACTTCTTTTTGGATAAAAAATAATAAGTGTTTGTGTGTGTATGCAGCAGACAATAATGGCGAAGATGAAGGTGGTGAGGAGTGAAATTGCTGCGAAACAAGTGGTTGTGATCGAGGAAAATGAGGAGATACATTGGTATGCTTCTTGAATTTCGTCCGGAGGACACAGGTACTTTTTCCTCTGACTTAGGGTTTGGGGGTTTAGTTCATTGATGGGTTCTTTGCATAATTTACATGAAATCAACTGGTAAGAATTGGGAATTAGCTGTATCAGTTTATGGATCATATAACTTGCAATTGCTAGAGGGTGTTTACCACCGATATGGCTGATAGAAAAGTTTGTTGTGAAGATAATTTTCTATCTTGATCTCTTAATTAGGGAGTGAAATTTTTGTAGGGAATCAAAAACTTGAACAGTAGCTGCAAGTATAGGTTACGGTTGACAGTGATTAAAAAAGAATTTCGGACAAGTGATTAATGTAAGCTTAGATAAGAAGATATGAAGCCAAGAATCATAATAGAGAGTTAGTAGATATTCTCACATATAAAAGGCAATTTTATTCTTCAATCTGTTTGTTACATTATCTGATTTTTATGTCATAATGGTTTCTTGAAACCCTGCTTTGAAGACCTCCAAAACAATCCATGTGTAGTAGAATAAGGTTTGTGTTTCCCACATCCTAATTGTGAAGTTACGTATGTTATTGTTGTAACATAAGAGATGAAGTGCCACAGTCAAACCTTAATTTCTAGCATGGTTTGGCTAGAATGTATTGATTGATTGAATGAGTGATATATAAGCAGACACACAACTAAAAGGTCTTCCAAAAACTTGTTTCGGAATATGAACAGCCAAATACAAGATGTCCGAACAAAAGAAGAGCAGTGAAAGTAGATATTCTGCCATCAGTAAGTACGATTTCATTCCGAATACAGTAGTTACAAAATCCAGCAGCCTCAAGCAGCTCAAATTATGTCGCTACAAGCAGAACTTCTTTTGGGAGTAATTTCCAGTAAAAACAGAAATTCCTAAATAACCTAAATCAATCTAGACATGCATCTGTACAACATATTTAGACAACTATGGTTTGGCTAGATTTTCAGGTAAAGTTGATATTTTGGGGTTTGTTTAGGTCTCTTTTGCTCTTTAGTGTATGCAAACAAGAATTAAAAAAAGAAATCTGGCCTTGCATGTTGAGTCAATCATTTAGCTTGAAATAGAGAATTTTGTTTTACTTCAAGATTGCAGTTTCTCACTGCCACAGCAAGGGTGTTTACCACCGAGATCGCTGAATGGAAAATCTCTTGTATCTTAATGTTTTAACTATTGTTCCTTGTTCCCCAGTCTGAAAATTTGTGCATATAACCTCTGACTTAGGGTTGTGGGGGCCTTGTTGATTGATCAATTTGATTGAATAAATTGTGAACTCTCTCTTGTTATTACTATTTGGAATTTTGCTTTACTTCAAAATTTCCTCCCCAAAAAAATTTCAACAACTCATTGATGCAATTGCTGATTGGCCTGCAATCCACCCAAAACCTTTTTATCATTATACTTTAGATTGCTATCTGAGAGTACTACTTTTCCCATTCTTGATGTCCACATTAATAGCATCAGATTTTTTTAATCTGCAAAGCTTGAATCTGAAAGAGGCATAGGGGTGGTTAGCTCTGTTTTAATTCATTGATCCCTTACCTAACACAATCAGCAAAGATTTTTGATGATTTTTTTGAGTTTGATTGCTCAACATAGATTACAATCCTTCCAATTTCCCAGATCATTTTAAATGTGTGAAATTTCTTAGGGAAGTCTTATGCTCGTTCCTTGATTTGTGTACCTTTTCTAATCTTCTTTTTCTTAATTAATTTGTGAAGCTACTCAAATCCAAATGCAAAGGATCT</genome_strand>
        <mrna_strand>CAATTCCCCTTTCAATGAATTTCCCAAATCCCCATTCAATTTTACTTCTTTTTGGATAAAAAATGATAAGTGTTTGTGTGTGTTTGCAGCCCACAATAATGGCGAACATGAAGGTGGTGACGAGTGAAATTGCTGCGAAACATGTGGTTGAGATCTAGGAAAATGAAGAGATACATTGGTATGCTTCTTGAATTTCGTCCGGAGGACACCG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTACTCAAATCCAAATGCAAAGGATCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0320M09-0CleD/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E724466" ref_strand="+" ref_description="SGN-E724466 [FC24AG09]">
      <seq>aatcggccgaattgaattccctctatacaaaatctccttataaaaaagagcaccccctttatctctatactgacaaaaaaccaagagaaatggacaataagtttcatttttttcattatctccatttcttcttgcttctatcttcatcttgcttttcacttgttgccttctcttggattccatataatgaaaacaagaactatgaaggctcctctgatcttgttaatcttgaataccatatgggacctgttctttcttctcctattaaactttatgtgatatggtatggccattggaacccttctcatcaagccacaattagagactttcttaactccttttcatcttcttatgcacctcatccttctgtagctgattggtggcgaaccgttcgtctttacacagatcaaactggccaaaacatctcaactatttcactttctggtgaattctttgactataagtactcacaagggaagtaccttagcagattatcaatgcaatatgtgatcaagaatgcagtaagatcataccgtgaatctataccgttaaattataagaatggagtttacttagtgttaacatcttatgatgttcaagttcaagaattttgtagggctgtatgtggtttccattactttacatttccatcaattcttggagtgacagtcccttatgcttggattggttatagtgggaaacaatgtcctggtttctgtgcttatccttttgcttggcctaagaattcagggaagccaccaccaaacacaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0320M09-0CleD/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0320M09.4" temp_strand="-" temp_description="C02HBa0320M09.4  AC215438.3 htgs_phase:3 submitted_to_sgn_as:C02HBa0320M09 sequenced_by:kribb upload_account_name:korea">
        <position start="72582" stop="71226"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="72299" g_stop="71526" g_length="774"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="771" r_length="771" r_score="0.988"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0320M09.4" gen_strand="-" ref_id="SGN-E724466" ref_strand="+">
        <total_alignment_score>0.988</total_alignment_score>
        <cumulative_length_of_scored_exons>774</cumulative_length_of_scored_exons>
        <coverage percentage="1.004" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0320M09.4" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E724466" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="72299" e_stop="71526"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AATCCAACCTATCTTCTAATTCCCTCTATATAAAATCTCCTTATAAAAAAGAGCACCCCCTTTATCTCTATACTGACAAAAAACCAAGAGAAATGGACAATAAGTTTCATTTTTTTCATTATCTCCATTTCTTCTTGCTTCTATCTTCATCTTGCTTTTCACTTGTTGCCTTCTCTTGGATTCCATATAATGAAAACAAGAACTATGAAGGCTCCTCTGATCTTGTTAATCTTGAATACCATATGGGACCTGTTCTTTCTTCTCCTATTAAACTTTATGTGATATGGTATGGCCATTGGAACCCTTCTCATCAAGCCACAATTAGAGACTTTCTTAACTCCTTTTCATCTTCTTATGCACCTCATCCTTCTGTAGCTGATTGGTGGCGAACCGTTCGTCTTTACACAGATCAAACTGGCCAAAACATCTCAACTATTTCACTTTCTGGTGAATTCTTTGACTATAAGTACTCACAAGGGAAGTACCTTAGCAGATTATCAATGCAATATGTGATCAAGAATGCAGTAAGATCATACCGTGAATCTATACCGTTAAATTATAAGAATGGAGTTTACTTAGTGTTAACATCTTATGATGTTCAAGTTCAAGAATTTTGTAGGGCTGTATGTGGTTTCCATTACTTTACATTTCCATCAATTCTTGGAGTGACAGTCCCTTATGCTTGGATTGGTTATAGTGGGAAACAATGTCCTGGTTTCTGTGCTTATCCTTTTGCTTGGCCTAAGAATTCAGGGAAGCCACCACCAAACACAA</genome_strand>
        <mrna_strand>AATC-GGCCGA-ATT-GAATTCCCTCTATACAAAATCTCCTTATAAAAAAGAGCACCCCCTTTATCTCTATACTGACAAAAAACCAAGAGAAATGGACAATAAGTTTCATTTTTTTCATTATCTCCATTTCTTCTTGCTTCTATCTTCATCTTGCTTTTCACTTGTTGCCTTCTCTTGGATTCCATATAATGAAAACAAGAACTATGAAGGCTCCTCTGATCTTGTTAATCTTGAATACCATATGGGACCTGTTCTTTCTTCTCCTATTAAACTTTATGTGATATGGTATGGCCATTGGAACCCTTCTCATCAAGCCACAATTAGAGACTTTCTTAACTCCTTTTCATCTTCTTATGCACCTCATCCTTCTGTAGCTGATTGGTGGCGAACCGTTCGTCTTTACACAGATCAAACTGGCCAAAACATCTCAACTATTTCACTTTCTGGTGAATTCTTTGACTATAAGTACTCACAAGGGAAGTACCTTAGCAGATTATCAATGCAATATGTGATCAAGAATGCAGTAAGATCATACCGTGAATCTATACCGTTAAATTATAAGAATGGAGTTTACTTAGTGTTAACATCTTATGATGTTCAAGTTCAAGAATTTTGTAGGGCTGTATGTGGTTTCCATTACTTTACATTTCCATCAATTCTTGGAGTGACAGTCCCTTATGCTTGGATTGGTTATAGTGGGAAACAATGTCCTGGTTTCTGTGCTTATCCTTTTGCTTGGCCTAAGAATTCAGGGAAGCCACCACCAAACACAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0320M09-0CleD/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E697589" ref_strand="+" ref_description="SGN-E697589 [FA03CA07]">
      <seq>cggtacaataagtttcatttttttcattatctccatttcttcttgcttctatcttcatcttgcttttcacttgttgccttctcttggattccatataatgaaaacaagaactatgaaggctcctctgatcttgttaatcttgaataccatatgggacctgttctttcttctcctattaaactttatgtgatatggtatggccattggaacccttctcatcaagccacaattagagactttcttaactccttttcatcttcttatgcacctcatccttctgtagctgattggtggcgaaccgttcgtctttacacagatcaaactggccaaaacatctcaactatttcactttctggtgaattctttgactataagtactcacaagggaagtaccttagcagattatcaatgcaatatgtgatcaagaatgcagtaagatcataccgtgaatctataccgttaaattataagaatggagtttacttagtgttaacatcttatgatgttcaagttcaagaattttgtagggctgtatgtggtttccattactttacatttccatcaattcttggagtgacagtcccttatgcttggattggttatagtgggaaacaatgtcctggtttctgtgcttatccttttgcttggcctaagaattca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0320M09-0CleD/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0320M09.4" temp_strand="-" temp_description="C02HBa0320M09.4  AC215438.3 htgs_phase:3 submitted_to_sgn_as:C02HBa0320M09 sequenced_by:kribb upload_account_name:korea">
        <position start="72505" stop="71248"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="72207" g_stop="71548" g_length="660"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="660" r_length="660" r_score="0.995"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0320M09.4" gen_strand="-" ref_id="SGN-E697589" ref_strand="+">
        <total_alignment_score>0.995</total_alignment_score>
        <cumulative_length_of_scored_exons>660</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0320M09.4" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E697589" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="72207" e_stop="71548"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATGGACAATAAGTTTCATTTTTTTCATTATCTCCATTTCTTCTTGCTTCTATCTTCATCTTGCTTTTCACTTGTTGCCTTCTCTTGGATTCCATATAATGAAAACAAGAACTATGAAGGCTCCTCTGATCTTGTTAATCTTGAATACCATATGGGACCTGTTCTTTCTTCTCCTATTAAACTTTATGTGATATGGTATGGCCATTGGAACCCTTCTCATCAAGCCACAATTAGAGACTTTCTTAACTCCTTTTCATCTTCTTATGCACCTCATCCTTCTGTAGCTGATTGGTGGCGAACCGTTCGTCTTTACACAGATCAAACTGGCCAAAACATCTCAACTATTTCACTTTCTGGTGAATTCTTTGACTATAAGTACTCACAAGGGAAGTACCTTAGCAGATTATCAATGCAATATGTGATCAAGAATGCAGTAAGATCATACCGTGAATCTATACCGTTAAATTATAAGAATGGAGTTTACTTAGTGTTAACATCTTATGATGTTCAAGTTCAAGAATTTTGTAGGGCTGTATGTGGTTTCCATTACTTTACATTTCCATCAATTCTTGGAGTGACAGTCCCTTATGCTTGGATTGGTTATAGTGGGAAACAATGTCCTGGTTTCTGTGCTTATCCTTTTGCTTGGCCTAAGAATTCA</genome_strand>
        <mrna_strand>CGGTACAATAAGTTTCATTTTTTTCATTATCTCCATTTCTTCTTGCTTCTATCTTCATCTTGCTTTTCACTTGTTGCCTTCTCTTGGATTCCATATAATGAAAACAAGAACTATGAAGGCTCCTCTGATCTTGTTAATCTTGAATACCATATGGGACCTGTTCTTTCTTCTCCTATTAAACTTTATGTGATATGGTATGGCCATTGGAACCCTTCTCATCAAGCCACAATTAGAGACTTTCTTAACTCCTTTTCATCTTCTTATGCACCTCATCCTTCTGTAGCTGATTGGTGGCGAACCGTTCGTCTTTACACAGATCAAACTGGCCAAAACATCTCAACTATTTCACTTTCTGGTGAATTCTTTGACTATAAGTACTCACAAGGGAAGTACCTTAGCAGATTATCAATGCAATATGTGATCAAGAATGCAGTAAGATCATACCGTGAATCTATACCGTTAAATTATAAGAATGGAGTTTACTTAGTGTTAACATCTTATGATGTTCAAGTTCAAGAATTTTGTAGGGCTGTATGTGGTTTCCATTACTTTACATTTCCATCAATTCTTGGAGTGACAGTCCCTTATGCTTGGATTGGTTATAGTGGGAAACAATGTCCTGGTTTCTGTGCTTATCCTTTTGCTTGGCCTAAGAATTCA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0320M09-0CleD/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E274991" ref_strand="+" ref_description="SGN-E274991 [cLEN-16-C22]">
      <seq>ccttgtgatttactgaacaacaaaccaaaaggctatttggcaggacagagggatattagtctatatcagctcgactttgtggagatttggtgtttgagtcattgacagaatgatgtcaagtaatttgggactaactgatttagaaaggatgccaagtcattttggtggagggactaaaagaagtctgatttttgagcaagcttgtgctgttctgtgttcactctaattgagcatgctttatgaaaagaaatacaggagaaaacattttcacctttttaatatgacattgggatttaacctttcctatcttcacttttactttggcattttaaacactttagtttttttatcttcagtacatgtagctcacccattctgatatttgcagattgagcattaaagctgtgccctcacactacttcttgatttgggtaatgccaaaagtaagaagc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0320M09-0CleD/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0320M09.4" temp_strand="+" temp_description="C02HBa0320M09.4  AC215438.3 htgs_phase:3 submitted_to_sgn_as:C02HBa0320M09 sequenced_by:kribb upload_account_name:korea">
        <position start="82731" stop="84561"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="83031" g_stop="83073" g_length="43"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="43" r_length="43" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="83074" i_stop="83852" i_length="779">
            <donor d_prob="0.762" d_score="1.00"/>
            <acceptor a_prob="0.883" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="83853" g_stop="84261" g_length="409"/>
          <reference_exon_boundary r_type="cDNA" r_start="44" r_stop="452" r_length="409" r_score="0.995"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0320M09.4" gen_strand="+" ref_id="SGN-E274991" ref_strand="+">
        <total_alignment_score>0.995</total_alignment_score>
        <cumulative_length_of_scored_exons>452</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0320M09.4" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E274991" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="83031" e_stop="83073"/>
          <exon e_start="83853" e_stop="84261"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCTTGTGATTTACTGAACAACAAACCAAAAGGCTATTTGGCAGGTGTGCAAGTAGCAAGTTAAAATGATTGCTTTATTCTCTTTAAGGTTAGAATCTCTCTGTAATTCCCATAAATGAGGATCAATTTTCTGCACTAATCCATATCAGATTAGATTTAATCAACACAACAGCAAGAATTTAGAAAAGCCTATAATGAAAAGATCCTTCCACCATCCATCATGTGGTATTATTTTAGTTCCTTGATTCTTCTAGTTACCATTTCTATCTTTTAAATTGGGTTACTTGAATAATTATTCTCCTAAGCTATTGTGATAGAAAAGATACTGGTAGGTTTCTTTTGCTAATTGTTGATAAAGCTTCAAATGCTTTTGTTTCTTATGGGAATTTCAGAACACTACTTAGTGGGATCATCTTCCCAATGGAAACTTAAAAGAAAACTAAAATTATGCTCTACTCATCTATTGTCCAATTTGATAATCTAACTTCATTGTCACTATGTTTTGGAGAAATAGATTTTTTTAACATATTGCTATTTTTCAGTTGCGTGAATATATGTACTAGTGATTAGAGTTCACCTGTATAAACATGTAGTTTTCTGGGAAAATGTCAAATGAAAATTCGAACCAATATAGTAAAAGTAGTTTTTTATTTCTTTATACAATATGAGTTCTTCTATTATCTAAATGAGTGTGATTTTATAGCTATATAAACTTATAGTTCATTTAGGTTTTCCATATGCTATCTTTAGTTCGTAAAAATGGAAAATTCATTTGAATATTTGGCGGTTGACTCTCCTATTTCATGTCACGTTATTCATTCAGGACAGAGGGATATTAGTCTATATCAGCTCGACTTTGTGGAGATTTGGTGTTTGAGTCATTGACAGAATGATGTCAAGTAATTTGGGACTAACTGATTTAGAAAGGATGCCAAGTCATTTTGGTGGAGGGACTAAAAGAAGTCTGATTTTTGAGCAAGCTTGTGCTGTTCTGTGTTCACTCTAATTGAGCATGCTTTATGAAAAGAAATACAGGAGAAAACATTTTCACCTTTTTAATATGACATTGGGATTTAACCTTTCCTATCTTCACTTTTACTTTGGCATTTTAAACACTTTAGTTTTTTTATCTTCAGTACATGTAGCTCAGCCATTCTGATATTTGCAGATTGAGCATTAAAGCTGTCCCCTCACACTACTTCTTGATTTGGGTAATGCCAAAAGTAAGAAGC</genome_strand>
        <mrna_strand>CCTTGTGATTTACTGAACAACAAACCAAAAGGCTATTTGGCAG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GACAGAGGGATATTAGTCTATATCAGCTCGACTTTGTGGAGATTTGGTGTTTGAGTCATTGACAGAATGATGTCAAGTAATTTGGGACTAACTGATTTAGAAAGGATGCCAAGTCATTTTGGTGGAGGGACTAAAAGAAGTCTGATTTTTGAGCAAGCTTGTGCTGTTCTGTGTTCACTCTAATTGAGCATGCTTTATGAAAAGAAATACAGGAGAAAACATTTTCACCTTTTTAATATGACATTGGGATTTAACCTTTCCTATCTTCACTTTTACTTTGGCATTTTAAACACTTTAGTTTTTTTATCTTCAGTACATGTAGCTCACCCATTCTGATATTTGCAGATTGAGCATTAAAGCTGTGCCCTCACACTACTTCTTGATTTGGGTAATGCCAAAAGTAAGAAGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0320M09-0CleD/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E540616" ref_strand="+" ref_description="SGN-E540616 [TUS-60-P18]">
      <seq>attttcccacttactctctatgaatgtatagggacaagatcatgactaaaggtgccagttttcaagattcatagtatcaacaataattagcaataaaatagactaacagtatgaattttccttttgtaaacagaacaatccaactacaaacactgaggcacacttttgtatttcaacagccttctttcaagcaaagtatacgaatggctcgttccgctctggatgagatgtcagcaacaggtgcttttgagagaactgcttcaaccttccgtaatatagtctcaagggaacccggctcagtttttccagtcgaatctgggaggtaccacctctacatatcatatgcttgcccatgggcatcaaggtgcctggcttacttgaagattaaaggccttgatcaagccattgatttcacatctgttaaacctgtttgggagaggacgaaggacagcgatgagcacacgggatgggtttttgcttcatcaagcaccgaggaagcaggagctgatcttgatcctcttaatggagccaaaagcatacgggagctgtatgagcttgcaagtacaaactattctgggaaatacactgttccggttctttgggataagaaactgaagacaatcgtgaacaacgagagtgcagaaataatacgcatgtttaatagtgaatttaatgatatagctgagaatgcagctttggacctttatcctcctcatttgcaatccctaatcaatgaagcaaatgaatggatatatgatggaataaacaacggagtgtatcaatgtggttttgcaaagaagcagagccttatga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0320M09-0CleD/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0320M09.4" temp_strand="+" temp_description="C02HBa0320M09.4  AC215438.3 htgs_phase:3 submitted_to_sgn_as:C02HBa0320M09 sequenced_by:kribb upload_account_name:korea">
        <position start="86564" stop="89252"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="86864" g_stop="86972" g_length="109"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="109" r_length="109" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="86973" i_stop="87022" i_length="50">
            <donor d_prob="0.956" d_score="1.00"/>
            <acceptor a_prob="0.000" a_score="0.87"/>
          </gDNA_intron_boundary>
          <shorter_than_min_intron_len/>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="87023" g_stop="87101" g_length="79"/>
          <reference_exon_boundary r_type="cDNA" r_start="110" r_stop="191" r_length="82" r_score="0.924"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="87102" i_stop="88156" i_length="1055">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.816" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="88157" g_stop="88381" g_length="225"/>
          <reference_exon_boundary r_type="cDNA" r_start="192" r_stop="416" r_length="225" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="88382" i_stop="88462" i_length="81">
            <donor d_prob="0.966" d_score="1.00"/>
            <acceptor a_prob="0.988" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="88463" g_stop="88639" g_length="177"/>
          <reference_exon_boundary r_type="cDNA" r_start="417" r_stop="593" r_length="177" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="88640" i_stop="88731" i_length="92">
            <donor d_prob="0.896" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="88732" g_stop="88952" g_length="221"/>
          <reference_exon_boundary r_type="cDNA" r_start="594" r_stop="813" r_length="220" r_score="0.995"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0320M09.4" gen_strand="+" ref_id="SGN-E540616" ref_strand="+">
        <total_alignment_score>0.991</total_alignment_score>
        <cumulative_length_of_scored_exons>811</cumulative_length_of_scored_exons>
        <coverage percentage="0.998" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0320M09.4" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E540616" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="86864" e_stop="86972"/>
          <exon e_start="87023" e_stop="87101"/>
          <exon e_start="88157" e_stop="88381"/>
          <exon e_start="88463" e_stop="88639"/>
          <exon e_start="88732" e_stop="88952"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATTTTCCCACTTACTCTCTATGAATGTATAGGGACAAGATCATGACTAAAGGTGCCAGTTTTCAAGATTCATAGTATCAACAATAATTAGCAATAAAATAGACTAACAGGTACCACTTTGCAATTTTTATTTGATCATTTTTCATCTATATATAAGTAT---GAATTTTCCTTTTGTAAACAGAACAATCCAACTACAAACACTGAGGCACACTTTTGTATTTCAACAGCCTTCTTTCAAGGTAAACAACTTTAATTTCAGTTCTTAATCATTTTTCCAGGTACCCCATATGGGGTAGATGTGTTTATATGCACTTCTATATGTTGATTGGAGTTATGGGGGAAGCGGGTGTTTCTGCTTTTCTTCTCTGTGTTTGAGGGTTTTGTGATTTTTGAAACTTTTTATACAAGATGGCTAATTTATGATCTTAAAGGAATTCTTGAGTTTGTGGTTTACTAGTCTAAGATATGTTTGTATGGTGATCAAGAAAATGGAAAAAAGAAGTGATTTTTATGTTCTTTTGTATAACTTGTGATTGTGTTACTTTGAAAAAAAATGTGTGTAGGGGAAGGAGAAATGGGGAGTCGAACTCTCGAGGAGGAAGTTGAGGTAGTCAATCAACTGAGCTACTAAGATTTCCCATTTTGGTTCAGAGCTTTAGCTGATTGTTTATTTTGTTAAGAGTCTGAAAGGGTTTACTGTTTTTGAGTTTCTTAGGTTGATTGCTTAGATGGTCACTCAATTACTAATAGTTATAGTTATTATCTAAGAAAGTGACTTTCTGCGATAACAATTATTAGTTGAGTGACCATTTGAGAAATCAATTCGAATTTCTTGGTGCCCCTTTTCAGCAATTTGAGCAGCGTCTCATAAAGAGAAAAGGATAAGAAAGGGGATGGGATTCTGAATTTATTGTGTTTTGCGAGATTGTAAGTTCATGTGATGAACTATGAATTGTGTCTGTGCAAGAATGAGAAGGAATTTCACTAAACGGAAAAGATAAATACAACAAGCAATGCTGTAACTAATGTACCGAAGCGGAGACTGTATTGTCTATTTTCTGCAGAGTAGGTATATTTCTCTGTACAAACAGGAACATGGAGCATATGTTAGTGTTATTCAATTGGATATATTGACTGCGTCATTTACATTTTATCTGAATATTTTAGTGAACGTATCATGTGCTTTGTTGAAAAAATGTCATCTTCTTTAGATGCAGTATCATGTTCATTTAGGCTTCTGGTAAAAGAGGATGAAAGGTTATACTAACATTCTGCACTTACTGGTTGTTTCCAGCAAAGTATACGAATGGCTCGTTCCGCTCTGGATGAGATGTCAGCAACAGGTGCTTTTGAGAGAACTGCTTCAACCTTCCGTAATATAGTCTCAAGGGAACCCGGCTCAGTTTTTCCAGTCGAATCTGGGAGGTACCACCTCTACATATCATATGCTTGCCCATGGGCATCAAGGTGCCTGGCTTACTTGAAGATTAAAGGCCTTGATCAAGCCATTGATTTCACAGTAAGAAGTTGAATGAACTACTTGTATCTTGGACTCAAGTTTGGACTCCTAACAATCTGTTTCCGTTGTGTTGGCTTGCAGTCTGTTAAACCTGTTTGGGAGAGGACGAAGGACAGCGATGAGCACACGGGATGGGTTTTTGCTTCATCAAGCACCGAGGAAGCAGGAGCTGATCTTGATCCTCTTAATGGAGCCAAAAGCATACGGGAGCTGTATGAGCTTGCAAGTACAAACTATTCTGGGAAATACACTGTTCCGGTATTGTTTATCAATAAATAGAATCTCTAATAACATTTATTTGCTTGGTCTGTTCATATTTTTATTGATTGATGGTCTGGTTTTTGTTATAGGTTCTTTGGGATAAGAAACTGAAGACAATCGTGAACAACGAGAGTGCAGAAATAATACGCATGTTTAATAGTGAATTTAATGATATAGCTGAGAATGCAGCTTTGGACCTTTATCCTCCTCATTTGCAATCCCTAATCAATGAAGCAAATGAATGGATATATGATGGAATAAACAACGGAGTGTATCAATGTGGTTTTGCAAAGAAGCAAGAGCCTTATGA</genome_strand>
        <mrna_strand>ATTTTCCCACTTACTCTCTATGAATGTATAGGGACAAGATCATGACTAAAGGTGCCAGTTTTCAAGATTCATAGTATCAACAATAATTAGCAATAAAATAGACTAACAG..................................................TATGAATTTTCCTTTTGTAAACAGAACAATCCAACTACAAACACTGAGGCACACTTTTGTATTTCAACAGCCTTCTTTCAAG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAAAGTATACGAATGGCTCGTTCCGCTCTGGATGAGATGTCAGCAACAGGTGCTTTTGAGAGAACTGCTTCAACCTTCCGTAATATAGTCTCAAGGGAACCCGGCTCAGTTTTTCCAGTCGAATCTGGGAGGTACCACCTCTACATATCATATGCTTGCCCATGGGCATCAAGGTGCCTGGCTTACTTGAAGATTAAAGGCCTTGATCAAGCCATTGATTTCACA.................................................................................TCTGTTAAACCTGTTTGGGAGAGGACGAAGGACAGCGATGAGCACACGGGATGGGTTTTTGCTTCATCAAGCACCGAGGAAGCAGGAGCTGATCTTGATCCTCTTAATGGAGCCAAAAGCATACGGGAGCTGTATGAGCTTGCAAGTACAAACTATTCTGGGAAATACACTGTTCCG............................................................................................GTTCTTTGGGATAAGAAACTGAAGACAATCGTGAACAACGAGAGTGCAGAAATAATACGCATGTTTAATAGTGAATTTAATGATATAGCTGAGAATGCAGCTTTGGACCTTTATCCTCCTCATTTGCAATCCCTAATCAATGAAGCAAATGAATGGATATATGATGGAATAAACAACGGAGTGTATCAATGTGGTTTTGCAAAGAAGC-AGAGCCTTATGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0320M09-0CleD/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E245215" ref_strand="+" ref_description="SGN-E245215 [cLEF-13-D24]">
      <seq>attttcccacttactctctatgaatgtatagggacaagatcatgactaaaggtgccagttttcaagattcatagtatcaacaataattagcaataaaatagactaacagaacaatccaactacaaacactgaggcacacttttgtatttcaacagccttctttcaagcaaagtatacgaatggctcgttccgctctggatgagatgtcagcaacaggtgcttttgagagaactgcttcaaccttccgtaatatagtctcaagggaacccggctcagtttttccagtcgaatctgggaggtaccacctctacatatcatatgcttgcccatgggcatcaaggtgcctggcttacttgaagattaaaggccttgatcaagccattgatttcacatctgttaaacctgtttgggagaggacgaaggacagcgatgagcacacgggatgggtttttgcttcatcaagcaccgaggaagcaggagctgatcttgatcctcttaatggagccaaaaagca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0320M09-0CleD/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0320M09.4" temp_strand="+" temp_description="C02HBa0320M09.4  AC215438.3 htgs_phase:3 submitted_to_sgn_as:C02HBa0320M09 sequenced_by:kribb upload_account_name:korea">
        <position start="86564" stop="88883"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="86864" g_stop="86972" g_length="109"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="109" r_length="109" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="86973" i_stop="87043" i_length="71">
            <donor d_prob="0.956" d_score="1.00"/>
            <acceptor a_prob="0.976" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="87044" g_stop="87101" g_length="58"/>
          <reference_exon_boundary r_type="cDNA" r_start="110" r_stop="167" r_length="58" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="87102" i_stop="88156" i_length="1055">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.816" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="88157" g_stop="88381" g_length="225"/>
          <reference_exon_boundary r_type="cDNA" r_start="168" r_stop="392" r_length="225" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="88382" i_stop="88462" i_length="81">
            <donor d_prob="0.966" d_score="1.00"/>
            <acceptor a_prob="0.988" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="88463" g_stop="88583" g_length="121"/>
          <reference_exon_boundary r_type="cDNA" r_start="393" r_stop="514" r_length="122" r_score="0.983"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0320M09.4" gen_strand="+" ref_id="SGN-E245215" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>513</cumulative_length_of_scored_exons>
        <coverage percentage="0.998" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0320M09.4" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E245215" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="86864" e_stop="86972"/>
          <exon e_start="87044" e_stop="87101"/>
          <exon e_start="88157" e_stop="88381"/>
          <exon e_start="88463" e_stop="88583"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATTTTCCCACTTACTCTCTATGAATGTATAGGGACAAGATCATGACTAAAGGTGCCAGTTTTCAAGATTCATAGTATCAACAATAATTAGCAATAAAATAGACTAACAGGTACCACTTTGCAATTTTTATTTGATCATTTTTCATCTATATATAAGTATGAATTTTCCTTTTGTAAACAGAACAATCCAACTACAAACACTGAGGCACACTTTTGTATTTCAACAGCCTTCTTTCAAGGTAAACAACTTTAATTTCAGTTCTTAATCATTTTTCCAGGTACCCCATATGGGGTAGATGTGTTTATATGCACTTCTATATGTTGATTGGAGTTATGGGGGAAGCGGGTGTTTCTGCTTTTCTTCTCTGTGTTTGAGGGTTTTGTGATTTTTGAAACTTTTTATACAAGATGGCTAATTTATGATCTTAAAGGAATTCTTGAGTTTGTGGTTTACTAGTCTAAGATATGTTTGTATGGTGATCAAGAAAATGGAAAAAAGAAGTGATTTTTATGTTCTTTTGTATAACTTGTGATTGTGTTACTTTGAAAAAAAATGTGTGTAGGGGAAGGAGAAATGGGGAGTCGAACTCTCGAGGAGGAAGTTGAGGTAGTCAATCAACTGAGCTACTAAGATTTCCCATTTTGGTTCAGAGCTTTAGCTGATTGTTTATTTTGTTAAGAGTCTGAAAGGGTTTACTGTTTTTGAGTTTCTTAGGTTGATTGCTTAGATGGTCACTCAATTACTAATAGTTATAGTTATTATCTAAGAAAGTGACTTTCTGCGATAACAATTATTAGTTGAGTGACCATTTGAGAAATCAATTCGAATTTCTTGGTGCCCCTTTTCAGCAATTTGAGCAGCGTCTCATAAAGAGAAAAGGATAAGAAAGGGGATGGGATTCTGAATTTATTGTGTTTTGCGAGATTGTAAGTTCATGTGATGAACTATGAATTGTGTCTGTGCAAGAATGAGAAGGAATTTCACTAAACGGAAAAGATAAATACAACAAGCAATGCTGTAACTAATGTACCGAAGCGGAGACTGTATTGTCTATTTTCTGCAGAGTAGGTATATTTCTCTGTACAAACAGGAACATGGAGCATATGTTAGTGTTATTCAATTGGATATATTGACTGCGTCATTTACATTTTATCTGAATATTTTAGTGAACGTATCATGTGCTTTGTTGAAAAAATGTCATCTTCTTTAGATGCAGTATCATGTTCATTTAGGCTTCTGGTAAAAGAGGATGAAAGGTTATACTAACATTCTGCACTTACTGGTTGTTTCCAGCAAAGTATACGAATGGCTCGTTCCGCTCTGGATGAGATGTCAGCAACAGGTGCTTTTGAGAGAACTGCTTCAACCTTCCGTAATATAGTCTCAAGGGAACCCGGCTCAGTTTTTCCAGTCGAATCTGGGAGGTACCACCTCTACATATCATATGCTTGCCCATGGGCATCAAGGTGCCTGGCTTACTTGAAGATTAAAGGCCTTGATCAAGCCATTGATTTCACAGTAAGAAGTTGAATGAACTACTTGTATCTTGGACTCAAGTTTGGACTCCTAACAATCTGTTTCCGTTGTGTTGGCTTGCAGTCTGTTAAACCTGTTTGGGAGAGGACGAAGGACAGCGATGAGCACACGGGATGGGTTTTTGCTTCATCAAGCACCGAGGAAGCAGGAGCTGATCTTGATCCTCTTAATGGAGCC-AAAAGCA</genome_strand>
        <mrna_strand>ATTTTCCCACTTACTCTCTATGAATGTATAGGGACAAGATCATGACTAAAGGTGCCAGTTTTCAAGATTCATAGTATCAACAATAATTAGCAATAAAATAGACTAACAG.......................................................................AACAATCCAACTACAAACACTGAGGCACACTTTTGTATTTCAACAGCCTTCTTTCAAG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAAAGTATACGAATGGCTCGTTCCGCTCTGGATGAGATGTCAGCAACAGGTGCTTTTGAGAGAACTGCTTCAACCTTCCGTAATATAGTCTCAAGGGAACCCGGCTCAGTTTTTCCAGTCGAATCTGGGAGGTACCACCTCTACATATCATATGCTTGCCCATGGGCATCAAGGTGCCTGGCTTACTTGAAGATTAAAGGCCTTGATCAAGCCATTGATTTCACA.................................................................................TCTGTTAAACCTGTTTGGGAGAGGACGAAGGACAGCGATGAGCACACGGGATGGGTTTTTGCTTCATCAAGCACCGAGGAAGCAGGAGCTGATCTTGATCCTCTTAATGGAGCCAAAAAGCA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0320M09-0CleD/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E289657" ref_strand="+" ref_description="SGN-E289657 [cLET-4-F14]">
      <seq>ttttcccacttactctctatgaatgtatagggacaagatcatgactaaaggtgccagttttcaagattcatagtatcaacaataattagcaataaaatagactaacagtatgaattttccttttgtaaacagaacaatccaactacaaacactgaggcacacttttgtatttcaacagccttctttcaagcaaagtatacgaatggctcgttccgctctggatgagatgtcagcaacaggtgcttttgagagaactgcttcaaccttccgtaatatagtctcaagggaacccggctcagtttttccagtcgaatctgggaggtaccacctctacatatcatatgcttgcccatgggcatcaaggtgcctggcttacttgaagattaaaggccttgatcaagccagtgatttcacatctgttaaacctgtttgggagaggacgaaggacagcgatgagcaca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0320M09-0CleD/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0320M09.4" temp_strand="+" temp_description="C02HBa0320M09.4  AC215438.3 htgs_phase:3 submitted_to_sgn_as:C02HBa0320M09 sequenced_by:kribb upload_account_name:korea">
        <position start="86565" stop="88808"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="86865" g_stop="86972" g_length="108"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="108" r_length="108" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="86973" i_stop="87022" i_length="50">
            <donor d_prob="0.956" d_score="1.00"/>
            <acceptor a_prob="0.000" a_score="0.87"/>
          </gDNA_intron_boundary>
          <shorter_than_min_intron_len/>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="87023" g_stop="87101" g_length="79"/>
          <reference_exon_boundary r_type="cDNA" r_start="109" r_stop="190" r_length="82" r_score="0.924"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="87102" i_stop="88156" i_length="1055">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.816" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="88157" g_stop="88381" g_length="225"/>
          <reference_exon_boundary r_type="cDNA" r_start="191" r_stop="415" r_length="225" r_score="0.996"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="88382" i_stop="88462" i_length="81">
            <donor d_prob="0.966" d_score="0.98"/>
            <acceptor a_prob="0.988" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="88463" g_stop="88508" g_length="46"/>
          <reference_exon_boundary r_type="cDNA" r_start="416" r_stop="461" r_length="46" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0320M09.4" gen_strand="+" ref_id="SGN-E289657" ref_strand="+">
        <total_alignment_score>0.983</total_alignment_score>
        <cumulative_length_of_scored_exons>458</cumulative_length_of_scored_exons>
        <coverage percentage="0.993" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0320M09.4" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E289657" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="86865" e_stop="86972"/>
          <exon e_start="87023" e_stop="87101"/>
          <exon e_start="88157" e_stop="88381"/>
          <exon e_start="88463" e_stop="88508"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTTCCCACTTACTCTCTATGAATGTATAGGGACAAGATCATGACTAAAGGTGCCAGTTTTCAAGATTCATAGTATCAACAATAATTAGCAATAAAATAGACTAACAGGTACCACTTTGCAATTTTTATTTGATCATTTTTCATCTATATATAAGTAT---GAATTTTCCTTTTGTAAACAGAACAATCCAACTACAAACACTGAGGCACACTTTTGTATTTCAACAGCCTTCTTTCAAGGTAAACAACTTTAATTTCAGTTCTTAATCATTTTTCCAGGTACCCCATATGGGGTAGATGTGTTTATATGCACTTCTATATGTTGATTGGAGTTATGGGGGAAGCGGGTGTTTCTGCTTTTCTTCTCTGTGTTTGAGGGTTTTGTGATTTTTGAAACTTTTTATACAAGATGGCTAATTTATGATCTTAAAGGAATTCTTGAGTTTGTGGTTTACTAGTCTAAGATATGTTTGTATGGTGATCAAGAAAATGGAAAAAAGAAGTGATTTTTATGTTCTTTTGTATAACTTGTGATTGTGTTACTTTGAAAAAAAATGTGTGTAGGGGAAGGAGAAATGGGGAGTCGAACTCTCGAGGAGGAAGTTGAGGTAGTCAATCAACTGAGCTACTAAGATTTCCCATTTTGGTTCAGAGCTTTAGCTGATTGTTTATTTTGTTAAGAGTCTGAAAGGGTTTACTGTTTTTGAGTTTCTTAGGTTGATTGCTTAGATGGTCACTCAATTACTAATAGTTATAGTTATTATCTAAGAAAGTGACTTTCTGCGATAACAATTATTAGTTGAGTGACCATTTGAGAAATCAATTCGAATTTCTTGGTGCCCCTTTTCAGCAATTTGAGCAGCGTCTCATAAAGAGAAAAGGATAAGAAAGGGGATGGGATTCTGAATTTATTGTGTTTTGCGAGATTGTAAGTTCATGTGATGAACTATGAATTGTGTCTGTGCAAGAATGAGAAGGAATTTCACTAAACGGAAAAGATAAATACAACAAGCAATGCTGTAACTAATGTACCGAAGCGGAGACTGTATTGTCTATTTTCTGCAGAGTAGGTATATTTCTCTGTACAAACAGGAACATGGAGCATATGTTAGTGTTATTCAATTGGATATATTGACTGCGTCATTTACATTTTATCTGAATATTTTAGTGAACGTATCATGTGCTTTGTTGAAAAAATGTCATCTTCTTTAGATGCAGTATCATGTTCATTTAGGCTTCTGGTAAAAGAGGATGAAAGGTTATACTAACATTCTGCACTTACTGGTTGTTTCCAGCAAAGTATACGAATGGCTCGTTCCGCTCTGGATGAGATGTCAGCAACAGGTGCTTTTGAGAGAACTGCTTCAACCTTCCGTAATATAGTCTCAAGGGAACCCGGCTCAGTTTTTCCAGTCGAATCTGGGAGGTACCACCTCTACATATCATATGCTTGCCCATGGGCATCAAGGTGCCTGGCTTACTTGAAGATTAAAGGCCTTGATCAAGCCATTGATTTCACAGTAAGAAGTTGAATGAACTACTTGTATCTTGGACTCAAGTTTGGACTCCTAACAATCTGTTTCCGTTGTGTTGGCTTGCAGTCTGTTAAACCTGTTTGGGAGAGGACGAAGGACAGCGATGAGCACA</genome_strand>
        <mrna_strand>TTTTCCCACTTACTCTCTATGAATGTATAGGGACAAGATCATGACTAAAGGTGCCAGTTTTCAAGATTCATAGTATCAACAATAATTAGCAATAAAATAGACTAACAG..................................................TATGAATTTTCCTTTTGTAAACAGAACAATCCAACTACAAACACTGAGGCACACTTTTGTATTTCAACAGCCTTCTTTCAAG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAAAGTATACGAATGGCTCGTTCCGCTCTGGATGAGATGTCAGCAACAGGTGCTTTTGAGAGAACTGCTTCAACCTTCCGTAATATAGTCTCAAGGGAACCCGGCTCAGTTTTTCCAGTCGAATCTGGGAGGTACCACCTCTACATATCATATGCTTGCCCATGGGCATCAAGGTGCCTGGCTTACTTGAAGATTAAAGGCCTTGATCAAGCCAGTGATTTCACA.................................................................................TCTGTTAAACCTGTTTGGGAGAGGACGAAGGACAGCGATGAGCACA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0320M09-0CleD/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E245251" ref_strand="+" ref_description="SGN-E245251 [cLEF-44-J9]">
      <seq>aagatcatgactaaaggtgccagttttcaagattcataggatcaacaataattagcaataaaatagactaacagaacaatccaactacaaacactgaggcacacttttgtatttcaacagccttctttcaagcaaagtatacgaatggctcgttccgctctggatgagatgtcagcaacaggtgcttttgagagaactgcttcaaccttccgtaatatagtctcaagggaacccggctcagtttttccagtcgaatctgggaggtaccacctctacatatcatatgcttgcccatgggcatcaaggtgcctggcttacttgaagattaaaggccttgatcaagccattgatttcacatctgttaaacctgtttgggagaggacgaaggacagcgatgagcacacgggatgggtttttgcttcatcaagcaccgaggaagcaggagctgatcttgatcctcttaatggagccaaaagcatacgggagctgtatgagcttgcaagtacaaactattctgggaaatacactgttccggttctttgggataagaaactgaagacaatcgtgaacaacgagagtgcagaaataatacgcat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0320M09-0CleD/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0320M09.4" temp_strand="+" temp_description="C02HBa0320M09.4  AC215438.3 htgs_phase:3 submitted_to_sgn_as:C02HBa0320M09 sequenced_by:kribb upload_account_name:korea">
        <position start="86599" stop="89093"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="86899" g_stop="86972" g_length="74"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="74" r_length="74" r_score="0.986"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="86973" i_stop="87043" i_length="71">
            <donor d_prob="0.956" d_score="0.98"/>
            <acceptor a_prob="0.976" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="87044" g_stop="87101" g_length="58"/>
          <reference_exon_boundary r_type="cDNA" r_start="75" r_stop="132" r_length="58" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="87102" i_stop="88156" i_length="1055">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.816" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="88157" g_stop="88381" g_length="225"/>
          <reference_exon_boundary r_type="cDNA" r_start="133" r_stop="357" r_length="225" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="88382" i_stop="88462" i_length="81">
            <donor d_prob="0.966" d_score="1.00"/>
            <acceptor a_prob="0.988" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="88463" g_stop="88639" g_length="177"/>
          <reference_exon_boundary r_type="cDNA" r_start="358" r_stop="534" r_length="177" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="88640" i_stop="88731" i_length="92">
            <donor d_prob="0.896" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="88732" g_stop="88793" g_length="62"/>
          <reference_exon_boundary r_type="cDNA" r_start="535" r_stop="596" r_length="62" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0320M09.4" gen_strand="+" ref_id="SGN-E245251" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>596</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0320M09.4" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E245251" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="86899" e_stop="86972"/>
          <exon e_start="87044" e_stop="87101"/>
          <exon e_start="88157" e_stop="88381"/>
          <exon e_start="88463" e_stop="88639"/>
          <exon e_start="88732" e_stop="88793"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAGATCATGACTAAAGGTGCCAGTTTTCAAGATTCATAGTATCAACAATAATTAGCAATAAAATAGACTAACAGGTACCACTTTGCAATTTTTATTTGATCATTTTTCATCTATATATAAGTATGAATTTTCCTTTTGTAAACAGAACAATCCAACTACAAACACTGAGGCACACTTTTGTATTTCAACAGCCTTCTTTCAAGGTAAACAACTTTAATTTCAGTTCTTAATCATTTTTCCAGGTACCCCATATGGGGTAGATGTGTTTATATGCACTTCTATATGTTGATTGGAGTTATGGGGGAAGCGGGTGTTTCTGCTTTTCTTCTCTGTGTTTGAGGGTTTTGTGATTTTTGAAACTTTTTATACAAGATGGCTAATTTATGATCTTAAAGGAATTCTTGAGTTTGTGGTTTACTAGTCTAAGATATGTTTGTATGGTGATCAAGAAAATGGAAAAAAGAAGTGATTTTTATGTTCTTTTGTATAACTTGTGATTGTGTTACTTTGAAAAAAAATGTGTGTAGGGGAAGGAGAAATGGGGAGTCGAACTCTCGAGGAGGAAGTTGAGGTAGTCAATCAACTGAGCTACTAAGATTTCCCATTTTGGTTCAGAGCTTTAGCTGATTGTTTATTTTGTTAAGAGTCTGAAAGGGTTTACTGTTTTTGAGTTTCTTAGGTTGATTGCTTAGATGGTCACTCAATTACTAATAGTTATAGTTATTATCTAAGAAAGTGACTTTCTGCGATAACAATTATTAGTTGAGTGACCATTTGAGAAATCAATTCGAATTTCTTGGTGCCCCTTTTCAGCAATTTGAGCAGCGTCTCATAAAGAGAAAAGGATAAGAAAGGGGATGGGATTCTGAATTTATTGTGTTTTGCGAGATTGTAAGTTCATGTGATGAACTATGAATTGTGTCTGTGCAAGAATGAGAAGGAATTTCACTAAACGGAAAAGATAAATACAACAAGCAATGCTGTAACTAATGTACCGAAGCGGAGACTGTATTGTCTATTTTCTGCAGAGTAGGTATATTTCTCTGTACAAACAGGAACATGGAGCATATGTTAGTGTTATTCAATTGGATATATTGACTGCGTCATTTACATTTTATCTGAATATTTTAGTGAACGTATCATGTGCTTTGTTGAAAAAATGTCATCTTCTTTAGATGCAGTATCATGTTCATTTAGGCTTCTGGTAAAAGAGGATGAAAGGTTATACTAACATTCTGCACTTACTGGTTGTTTCCAGCAAAGTATACGAATGGCTCGTTCCGCTCTGGATGAGATGTCAGCAACAGGTGCTTTTGAGAGAACTGCTTCAACCTTCCGTAATATAGTCTCAAGGGAACCCGGCTCAGTTTTTCCAGTCGAATCTGGGAGGTACCACCTCTACATATCATATGCTTGCCCATGGGCATCAAGGTGCCTGGCTTACTTGAAGATTAAAGGCCTTGATCAAGCCATTGATTTCACAGTAAGAAGTTGAATGAACTACTTGTATCTTGGACTCAAGTTTGGACTCCTAACAATCTGTTTCCGTTGTGTTGGCTTGCAGTCTGTTAAACCTGTTTGGGAGAGGACGAAGGACAGCGATGAGCACACGGGATGGGTTTTTGCTTCATCAAGCACCGAGGAAGCAGGAGCTGATCTTGATCCTCTTAATGGAGCCAAAAGCATACGGGAGCTGTATGAGCTTGCAAGTACAAACTATTCTGGGAAATACACTGTTCCGGTATTGTTTATCAATAAATAGAATCTCTAATAACATTTATTTGCTTGGTCTGTTCATATTTTTATTGATTGATGGTCTGGTTTTTGTTATAGGTTCTTTGGGATAAGAAACTGAAGACAATCGTGAACAACGAGAGTGCAGAAATAATACGCAT</genome_strand>
        <mrna_strand>AAGATCATGACTAAAGGTGCCAGTTTTCAAGATTCATAGGATCAACAATAATTAGCAATAAAATAGACTAACAG.......................................................................AACAATCCAACTACAAACACTGAGGCACACTTTTGTATTTCAACAGCCTTCTTTCAAG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAAAGTATACGAATGGCTCGTTCCGCTCTGGATGAGATGTCAGCAACAGGTGCTTTTGAGAGAACTGCTTCAACCTTCCGTAATATAGTCTCAAGGGAACCCGGCTCAGTTTTTCCAGTCGAATCTGGGAGGTACCACCTCTACATATCATATGCTTGCCCATGGGCATCAAGGTGCCTGGCTTACTTGAAGATTAAAGGCCTTGATCAAGCCATTGATTTCACA.................................................................................TCTGTTAAACCTGTTTGGGAGAGGACGAAGGACAGCGATGAGCACACGGGATGGGTTTTTGCTTCATCAAGCACCGAGGAAGCAGGAGCTGATCTTGATCCTCTTAATGGAGCCAAAAGCATACGGGAGCTGTATGAGCTTGCAAGTACAAACTATTCTGGGAAATACACTGTTCCG............................................................................................GTTCTTTGGGATAAGAAACTGAAGACAATCGTGAACAACGAGAGTGCAGAAATAATACGCAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0320M09-0CleD/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E245250" ref_strand="+" ref_description="SGN-E245250 [cLEF-44-J7]">
      <seq>aagatcatgactaaaggtgccagttttcaagattcataggatcaacagtaattagcaataaaatagactaacagaacaatccaactacaaacactgaggcacacttttgtatttcaacagccttctttcaagcaaagtatacgaatggctcgttccgctctggatgagatgtcagcaacaggtgcttttgagagaactgcttcaaccttccgtaatatagtctcaagggaacccggctcagtttttccagtcgaatctgggaggtaccacctctacatatcatatgcttgcccatgggcatcaaggtgcctggcttacttgaagattaaaggccttgatcaagccattgatttcacatctgttaaacctgtttgggagaggacgaaggacagcgatgagcacacgggatgggtttttgcttcatcaagcaccgaggaagcaggagctgatcttgatcctcttaatggagccaaaagcatacgggagctgtatgagcttgcaagtgcaaactattctgggaaatacact</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0320M09-0CleD/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0320M09.4" temp_strand="+" temp_description="C02HBa0320M09.4  AC215438.3 htgs_phase:3 submitted_to_sgn_as:C02HBa0320M09 sequenced_by:kribb upload_account_name:korea">
        <position start="86599" stop="88933"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="86899" g_stop="86972" g_length="74"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="74" r_length="74" r_score="0.973"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="86973" i_stop="87043" i_length="71">
            <donor d_prob="0.956" d_score="0.96"/>
            <acceptor a_prob="0.976" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="87044" g_stop="87101" g_length="58"/>
          <reference_exon_boundary r_type="cDNA" r_start="75" r_stop="132" r_length="58" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="87102" i_stop="88156" i_length="1055">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.816" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="88157" g_stop="88381" g_length="225"/>
          <reference_exon_boundary r_type="cDNA" r_start="133" r_stop="357" r_length="225" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="88382" i_stop="88462" i_length="81">
            <donor d_prob="0.966" d_score="1.00"/>
            <acceptor a_prob="0.988" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="88463" g_stop="88633" g_length="171"/>
          <reference_exon_boundary r_type="cDNA" r_start="358" r_stop="528" r_length="171" r_score="0.994"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0320M09.4" gen_strand="+" ref_id="SGN-E245250" ref_strand="+">
        <total_alignment_score>0.994</total_alignment_score>
        <cumulative_length_of_scored_exons>528</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0320M09.4" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E245250" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="86899" e_stop="86972"/>
          <exon e_start="87044" e_stop="87101"/>
          <exon e_start="88157" e_stop="88381"/>
          <exon e_start="88463" e_stop="88633"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAGATCATGACTAAAGGTGCCAGTTTTCAAGATTCATAGTATCAACAATAATTAGCAATAAAATAGACTAACAGGTACCACTTTGCAATTTTTATTTGATCATTTTTCATCTATATATAAGTATGAATTTTCCTTTTGTAAACAGAACAATCCAACTACAAACACTGAGGCACACTTTTGTATTTCAACAGCCTTCTTTCAAGGTAAACAACTTTAATTTCAGTTCTTAATCATTTTTCCAGGTACCCCATATGGGGTAGATGTGTTTATATGCACTTCTATATGTTGATTGGAGTTATGGGGGAAGCGGGTGTTTCTGCTTTTCTTCTCTGTGTTTGAGGGTTTTGTGATTTTTGAAACTTTTTATACAAGATGGCTAATTTATGATCTTAAAGGAATTCTTGAGTTTGTGGTTTACTAGTCTAAGATATGTTTGTATGGTGATCAAGAAAATGGAAAAAAGAAGTGATTTTTATGTTCTTTTGTATAACTTGTGATTGTGTTACTTTGAAAAAAAATGTGTGTAGGGGAAGGAGAAATGGGGAGTCGAACTCTCGAGGAGGAAGTTGAGGTAGTCAATCAACTGAGCTACTAAGATTTCCCATTTTGGTTCAGAGCTTTAGCTGATTGTTTATTTTGTTAAGAGTCTGAAAGGGTTTACTGTTTTTGAGTTTCTTAGGTTGATTGCTTAGATGGTCACTCAATTACTAATAGTTATAGTTATTATCTAAGAAAGTGACTTTCTGCGATAACAATTATTAGTTGAGTGACCATTTGAGAAATCAATTCGAATTTCTTGGTGCCCCTTTTCAGCAATTTGAGCAGCGTCTCATAAAGAGAAAAGGATAAGAAAGGGGATGGGATTCTGAATTTATTGTGTTTTGCGAGATTGTAAGTTCATGTGATGAACTATGAATTGTGTCTGTGCAAGAATGAGAAGGAATTTCACTAAACGGAAAAGATAAATACAACAAGCAATGCTGTAACTAATGTACCGAAGCGGAGACTGTATTGTCTATTTTCTGCAGAGTAGGTATATTTCTCTGTACAAACAGGAACATGGAGCATATGTTAGTGTTATTCAATTGGATATATTGACTGCGTCATTTACATTTTATCTGAATATTTTAGTGAACGTATCATGTGCTTTGTTGAAAAAATGTCATCTTCTTTAGATGCAGTATCATGTTCATTTAGGCTTCTGGTAAAAGAGGATGAAAGGTTATACTAACATTCTGCACTTACTGGTTGTTTCCAGCAAAGTATACGAATGGCTCGTTCCGCTCTGGATGAGATGTCAGCAACAGGTGCTTTTGAGAGAACTGCTTCAACCTTCCGTAATATAGTCTCAAGGGAACCCGGCTCAGTTTTTCCAGTCGAATCTGGGAGGTACCACCTCTACATATCATATGCTTGCCCATGGGCATCAAGGTGCCTGGCTTACTTGAAGATTAAAGGCCTTGATCAAGCCATTGATTTCACAGTAAGAAGTTGAATGAACTACTTGTATCTTGGACTCAAGTTTGGACTCCTAACAATCTGTTTCCGTTGTGTTGGCTTGCAGTCTGTTAAACCTGTTTGGGAGAGGACGAAGGACAGCGATGAGCACACGGGATGGGTTTTTGCTTCATCAAGCACCGAGGAAGCAGGAGCTGATCTTGATCCTCTTAATGGAGCCAAAAGCATACGGGAGCTGTATGAGCTTGCAAGTACAAACTATTCTGGGAAATACACT</genome_strand>
        <mrna_strand>AAGATCATGACTAAAGGTGCCAGTTTTCAAGATTCATAGGATCAACAGTAATTAGCAATAAAATAGACTAACAG.......................................................................AACAATCCAACTACAAACACTGAGGCACACTTTTGTATTTCAACAGCCTTCTTTCAAG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAAAGTATACGAATGGCTCGTTCCGCTCTGGATGAGATGTCAGCAACAGGTGCTTTTGAGAGAACTGCTTCAACCTTCCGTAATATAGTCTCAAGGGAACCCGGCTCAGTTTTTCCAGTCGAATCTGGGAGGTACCACCTCTACATATCATATGCTTGCCCATGGGCATCAAGGTGCCTGGCTTACTTGAAGATTAAAGGCCTTGATCAAGCCATTGATTTCACA.................................................................................TCTGTTAAACCTGTTTGGGAGAGGACGAAGGACAGCGATGAGCACACGGGATGGGTTTTTGCTTCATCAAGCACCGAGGAAGCAGGAGCTGATCTTGATCCTCTTAATGGAGCCAAAAGCATACGGGAGCTGTATGAGCTTGCAAGTGCAAACTATTCTGGGAAATACACT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0320M09-0CleD/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E248686" ref_strand="+" ref_description="SGN-E248686 [cLEF-58-C2]">
      <seq>gaactagtctcgagttttcaagattcatagtatcaacaataattagcaataaaatagactaacagaacaatccaactacaaacactgaggcacacttttgtatttcaacagccttctttcaagcaaagtatacgaatggctcgttccgctctggatgagatgtcagcaacaggtgcttttgagagaactgcttcaaccttccgtaatatagtctcaagggaacccggctcagtttttccagtcgaatctgggaggtaccacctctacatatcatatgcttgcccatgggcatcaaggtgcctggcttacttgaagattaaaggccttgatcaagccattgatttcacatctgttaaacctgtttgggagaggacgaaggacagcgatgagcacacgggatgggtttttgcttcatcaagcaccgaggaagcaggagctgatcttgatcctcttaatggagccaaaagcatacgggagctg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0320M09-0CleD/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0320M09.4" temp_strand="+" temp_description="C02HBa0320M09.4  AC215438.3 htgs_phase:3 submitted_to_sgn_as:C02HBa0320M09 sequenced_by:kribb upload_account_name:korea">
        <position start="86618" stop="88894"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="86907" g_stop="86972" g_length="66"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="65" r_length="65" r_score="0.879"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="86973" i_stop="87043" i_length="71">
            <donor d_prob="0.956" d_score="1.00"/>
            <acceptor a_prob="0.976" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="87044" g_stop="87101" g_length="58"/>
          <reference_exon_boundary r_type="cDNA" r_start="66" r_stop="123" r_length="58" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="87102" i_stop="88156" i_length="1055">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.816" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="88157" g_stop="88381" g_length="225"/>
          <reference_exon_boundary r_type="cDNA" r_start="124" r_stop="348" r_length="225" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="88382" i_stop="88462" i_length="81">
            <donor d_prob="0.966" d_score="1.00"/>
            <acceptor a_prob="0.988" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="88463" g_stop="88594" g_length="132"/>
          <reference_exon_boundary r_type="cDNA" r_start="349" r_stop="480" r_length="132" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0320M09.4" gen_strand="+" ref_id="SGN-E248686" ref_strand="+">
        <total_alignment_score>0.983</total_alignment_score>
        <cumulative_length_of_scored_exons>481</cumulative_length_of_scored_exons>
        <coverage percentage="1.002" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0320M09.4" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E248686" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="86907" e_stop="86972"/>
          <exon e_start="87044" e_stop="87101"/>
          <exon e_start="88157" e_stop="88381"/>
          <exon e_start="88463" e_stop="88594"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GACTAAAGGTGCCAGTTTTCAAGATTCATAGTATCAACAATAATTAGCAATAAAATAGACTAACAGGTACCACTTTGCAATTTTTATTTGATCATTTTTCATCTATATATAAGTATGAATTTTCCTTTTGTAAACAGAACAATCCAACTACAAACACTGAGGCACACTTTTGTATTTCAACAGCCTTCTTTCAAGGTAAACAACTTTAATTTCAGTTCTTAATCATTTTTCCAGGTACCCCATATGGGGTAGATGTGTTTATATGCACTTCTATATGTTGATTGGAGTTATGGGGGAAGCGGGTGTTTCTGCTTTTCTTCTCTGTGTTTGAGGGTTTTGTGATTTTTGAAACTTTTTATACAAGATGGCTAATTTATGATCTTAAAGGAATTCTTGAGTTTGTGGTTTACTAGTCTAAGATATGTTTGTATGGTGATCAAGAAAATGGAAAAAAGAAGTGATTTTTATGTTCTTTTGTATAACTTGTGATTGTGTTACTTTGAAAAAAAATGTGTGTAGGGGAAGGAGAAATGGGGAGTCGAACTCTCGAGGAGGAAGTTGAGGTAGTCAATCAACTGAGCTACTAAGATTTCCCATTTTGGTTCAGAGCTTTAGCTGATTGTTTATTTTGTTAAGAGTCTGAAAGGGTTTACTGTTTTTGAGTTTCTTAGGTTGATTGCTTAGATGGTCACTCAATTACTAATAGTTATAGTTATTATCTAAGAAAGTGACTTTCTGCGATAACAATTATTAGTTGAGTGACCATTTGAGAAATCAATTCGAATTTCTTGGTGCCCCTTTTCAGCAATTTGAGCAGCGTCTCATAAAGAGAAAAGGATAAGAAAGGGGATGGGATTCTGAATTTATTGTGTTTTGCGAGATTGTAAGTTCATGTGATGAACTATGAATTGTGTCTGTGCAAGAATGAGAAGGAATTTCACTAAACGGAAAAGATAAATACAACAAGCAATGCTGTAACTAATGTACCGAAGCGGAGACTGTATTGTCTATTTTCTGCAGAGTAGGTATATTTCTCTGTACAAACAGGAACATGGAGCATATGTTAGTGTTATTCAATTGGATATATTGACTGCGTCATTTACATTTTATCTGAATATTTTAGTGAACGTATCATGTGCTTTGTTGAAAAAATGTCATCTTCTTTAGATGCAGTATCATGTTCATTTAGGCTTCTGGTAAAAGAGGATGAAAGGTTATACTAACATTCTGCACTTACTGGTTGTTTCCAGCAAAGTATACGAATGGCTCGTTCCGCTCTGGATGAGATGTCAGCAACAGGTGCTTTTGAGAGAACTGCTTCAACCTTCCGTAATATAGTCTCAAGGGAACCCGGCTCAGTTTTTCCAGTCGAATCTGGGAGGTACCACCTCTACATATCATATGCTTGCCCATGGGCATCAAGGTGCCTGGCTTACTTGAAGATTAAAGGCCTTGATCAAGCCATTGATTTCACAGTAAGAAGTTGAATGAACTACTTGTATCTTGGACTCAAGTTTGGACTCCTAACAATCTGTTTCCGTTGTGTTGGCTTGCAGTCTGTTAAACCTGTTTGGGAGAGGACGAAGGACAGCGATGAGCACACGGGATGGGTTTTTGCTTCATCAAGCACCGAGGAAGCAGGAGCTGATCTTGATCCTCTTAATGGAGCCAAAAGCATACGGGAGCTG</genome_strand>
        <mrna_strand>GAACTA-GTCTCGAGTTTTCAAGATTCATAGTATCAACAATAATTAGCAATAAAATAGACTAACAG.......................................................................AACAATCCAACTACAAACACTGAGGCACACTTTTGTATTTCAACAGCCTTCTTTCAAG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAAAGTATACGAATGGCTCGTTCCGCTCTGGATGAGATGTCAGCAACAGGTGCTTTTGAGAGAACTGCTTCAACCTTCCGTAATATAGTCTCAAGGGAACCCGGCTCAGTTTTTCCAGTCGAATCTGGGAGGTACCACCTCTACATATCATATGCTTGCCCATGGGCATCAAGGTGCCTGGCTTACTTGAAGATTAAAGGCCTTGATCAAGCCATTGATTTCACA.................................................................................TCTGTTAAACCTGTTTGGGAGAGGACGAAGGACAGCGATGAGCACACGGGATGGGTTTTTGCTTCATCAAGCACCGAGGAAGCAGGAGCTGATCTTGATCCTCTTAATGGAGCCAAAAGCATACGGGAGCTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0320M09-0CleD/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E252405" ref_strand="+" ref_description="SGN-E252405 [cLEG-12-H13]">
      <seq>attcatagtatcaacaataattagcaataaaatagactaacagaacaatccaactacaaacactgaggcacacttttgtatttcaacagccttctttcaagcaaagtatacgaatggctcgttccgctctggatgagatgtcagcaacaggtgcttttgagagaactgcttcaaccttccgtaatatagtctcaagggaacccggctcagtttttccagtcgaatctgggaggtaccacctctacatatcatatgcttgcccatgggcatcaaggtgcctggcttacttgaagattaaaggccttgatcaagccattgatttcacatctgttaaacctgtttgggagaggacgaaggacagcgatgagcacacgggatgggtttttgcttcatcaagcaccgaggaagcaggagctgatcttgatcctcttaatggagccaaaagcatacgggagctgtatgagcttgcaagtacaaactattctgggaaatacactgttccggttctttgggataagaaactgaagacaatcgtgaacaacgagagtgcagaaataatacgcatgtttaatagtgaatttaatgatatagctgagaatgcagcttt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0320M09-0CleD/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0320M09.4" temp_strand="+" temp_description="C02HBa0320M09.4  AC215438.3 htgs_phase:3 submitted_to_sgn_as:C02HBa0320M09 sequenced_by:kribb upload_account_name:korea">
        <position start="86630" stop="89135"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="86930" g_stop="86972" g_length="43"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="43" r_length="43" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="86973" i_stop="87043" i_length="71">
            <donor d_prob="0.956" d_score="1.00"/>
            <acceptor a_prob="0.976" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="87044" g_stop="87101" g_length="58"/>
          <reference_exon_boundary r_type="cDNA" r_start="44" r_stop="101" r_length="58" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="87102" i_stop="88156" i_length="1055">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.816" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="88157" g_stop="88381" g_length="225"/>
          <reference_exon_boundary r_type="cDNA" r_start="102" r_stop="326" r_length="225" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="88382" i_stop="88462" i_length="81">
            <donor d_prob="0.966" d_score="1.00"/>
            <acceptor a_prob="0.988" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="88463" g_stop="88639" g_length="177"/>
          <reference_exon_boundary r_type="cDNA" r_start="327" r_stop="503" r_length="177" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="88640" i_stop="88731" i_length="92">
            <donor d_prob="0.896" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="88732" g_stop="88835" g_length="104"/>
          <reference_exon_boundary r_type="cDNA" r_start="504" r_stop="607" r_length="104" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0320M09.4" gen_strand="+" ref_id="SGN-E252405" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>607</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0320M09.4" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E252405" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="86930" e_stop="86972"/>
          <exon e_start="87044" e_stop="87101"/>
          <exon e_start="88157" e_stop="88381"/>
          <exon e_start="88463" e_stop="88639"/>
          <exon e_start="88732" e_stop="88835"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATTCATAGTATCAACAATAATTAGCAATAAAATAGACTAACAGGTACCACTTTGCAATTTTTATTTGATCATTTTTCATCTATATATAAGTATGAATTTTCCTTTTGTAAACAGAACAATCCAACTACAAACACTGAGGCACACTTTTGTATTTCAACAGCCTTCTTTCAAGGTAAACAACTTTAATTTCAGTTCTTAATCATTTTTCCAGGTACCCCATATGGGGTAGATGTGTTTATATGCACTTCTATATGTTGATTGGAGTTATGGGGGAAGCGGGTGTTTCTGCTTTTCTTCTCTGTGTTTGAGGGTTTTGTGATTTTTGAAACTTTTTATACAAGATGGCTAATTTATGATCTTAAAGGAATTCTTGAGTTTGTGGTTTACTAGTCTAAGATATGTTTGTATGGTGATCAAGAAAATGGAAAAAAGAAGTGATTTTTATGTTCTTTTGTATAACTTGTGATTGTGTTACTTTGAAAAAAAATGTGTGTAGGGGAAGGAGAAATGGGGAGTCGAACTCTCGAGGAGGAAGTTGAGGTAGTCAATCAACTGAGCTACTAAGATTTCCCATTTTGGTTCAGAGCTTTAGCTGATTGTTTATTTTGTTAAGAGTCTGAAAGGGTTTACTGTTTTTGAGTTTCTTAGGTTGATTGCTTAGATGGTCACTCAATTACTAATAGTTATAGTTATTATCTAAGAAAGTGACTTTCTGCGATAACAATTATTAGTTGAGTGACCATTTGAGAAATCAATTCGAATTTCTTGGTGCCCCTTTTCAGCAATTTGAGCAGCGTCTCATAAAGAGAAAAGGATAAGAAAGGGGATGGGATTCTGAATTTATTGTGTTTTGCGAGATTGTAAGTTCATGTGATGAACTATGAATTGTGTCTGTGCAAGAATGAGAAGGAATTTCACTAAACGGAAAAGATAAATACAACAAGCAATGCTGTAACTAATGTACCGAAGCGGAGACTGTATTGTCTATTTTCTGCAGAGTAGGTATATTTCTCTGTACAAACAGGAACATGGAGCATATGTTAGTGTTATTCAATTGGATATATTGACTGCGTCATTTACATTTTATCTGAATATTTTAGTGAACGTATCATGTGCTTTGTTGAAAAAATGTCATCTTCTTTAGATGCAGTATCATGTTCATTTAGGCTTCTGGTAAAAGAGGATGAAAGGTTATACTAACATTCTGCACTTACTGGTTGTTTCCAGCAAAGTATACGAATGGCTCGTTCCGCTCTGGATGAGATGTCAGCAACAGGTGCTTTTGAGAGAACTGCTTCAACCTTCCGTAATATAGTCTCAAGGGAACCCGGCTCAGTTTTTCCAGTCGAATCTGGGAGGTACCACCTCTACATATCATATGCTTGCCCATGGGCATCAAGGTGCCTGGCTTACTTGAAGATTAAAGGCCTTGATCAAGCCATTGATTTCACAGTAAGAAGTTGAATGAACTACTTGTATCTTGGACTCAAGTTTGGACTCCTAACAATCTGTTTCCGTTGTGTTGGCTTGCAGTCTGTTAAACCTGTTTGGGAGAGGACGAAGGACAGCGATGAGCACACGGGATGGGTTTTTGCTTCATCAAGCACCGAGGAAGCAGGAGCTGATCTTGATCCTCTTAATGGAGCCAAAAGCATACGGGAGCTGTATGAGCTTGCAAGTACAAACTATTCTGGGAAATACACTGTTCCGGTATTGTTTATCAATAAATAGAATCTCTAATAACATTTATTTGCTTGGTCTGTTCATATTTTTATTGATTGATGGTCTGGTTTTTGTTATAGGTTCTTTGGGATAAGAAACTGAAGACAATCGTGAACAACGAGAGTGCAGAAATAATACGCATGTTTAATAGTGAATTTAATGATATAGCTGAGAATGCAGCTTT</genome_strand>
        <mrna_strand>ATTCATAGTATCAACAATAATTAGCAATAAAATAGACTAACAG.......................................................................AACAATCCAACTACAAACACTGAGGCACACTTTTGTATTTCAACAGCCTTCTTTCAAG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAAAGTATACGAATGGCTCGTTCCGCTCTGGATGAGATGTCAGCAACAGGTGCTTTTGAGAGAACTGCTTCAACCTTCCGTAATATAGTCTCAAGGGAACCCGGCTCAGTTTTTCCAGTCGAATCTGGGAGGTACCACCTCTACATATCATATGCTTGCCCATGGGCATCAAGGTGCCTGGCTTACTTGAAGATTAAAGGCCTTGATCAAGCCATTGATTTCACA.................................................................................TCTGTTAAACCTGTTTGGGAGAGGACGAAGGACAGCGATGAGCACACGGGATGGGTTTTTGCTTCATCAAGCACCGAGGAAGCAGGAGCTGATCTTGATCCTCTTAATGGAGCCAAAAGCATACGGGAGCTGTATGAGCTTGCAAGTACAAACTATTCTGGGAAATACACTGTTCCG............................................................................................GTTCTTTGGGATAAGAAACTGAAGACAATCGTGAACAACGAGAGTGCAGAAATAATACGCATGTTTAATAGTGAATTTAATGATATAGCTGAGAATGCAGCTTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0320M09-0CleD/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E275251" ref_strand="+" ref_description="SGN-E275251 [cLEN-9-I6]">
      <seq>gtatcaacaataattagcaataaaatagactaacagaacaatccaactacaaacactgaggcacacttttgtatttcaacagccttctttcaagcaaagtatacgaatggctcgttccgctctggatgagatgtcagcaacaggtgcttttgagagaactgcttcaaccttccgtaatatagtctcaagggaacccggctcagtttttccagtcgaatctgggaggtaccacctctacatatcatatgcttgcccatgggcatcaaggtgcctggcttacttgaagattaaaggccttgatcaagccattgatttcacatctgttaaacctgtttgggagaggacgaaggacagcgatgagcacacgggatgggtttttgcttcatcaagcaccgaggaagcaggagctgatcttgatcctcttaatggagccaaaagcatacgggagctgtatg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0320M09-0CleD/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0320M09.4" temp_strand="+" temp_description="C02HBa0320M09.4  AC215438.3 htgs_phase:3 submitted_to_sgn_as:C02HBa0320M09 sequenced_by:kribb upload_account_name:korea">
        <position start="86637" stop="88898"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="86937" g_stop="86972" g_length="36"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="36" r_length="36" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="86973" i_stop="87043" i_length="71">
            <donor d_prob="0.956" d_score="0.00"/>
            <acceptor a_prob="0.976" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="87044" g_stop="87101" g_length="58"/>
          <reference_exon_boundary r_type="cDNA" r_start="37" r_stop="94" r_length="58" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="87102" i_stop="88156" i_length="1055">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.816" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="88157" g_stop="88381" g_length="225"/>
          <reference_exon_boundary r_type="cDNA" r_start="95" r_stop="319" r_length="225" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="88382" i_stop="88462" i_length="81">
            <donor d_prob="0.966" d_score="1.00"/>
            <acceptor a_prob="0.988" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="88463" g_stop="88598" g_length="136"/>
          <reference_exon_boundary r_type="cDNA" r_start="320" r_stop="455" r_length="136" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0320M09.4" gen_strand="+" ref_id="SGN-E275251" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>455</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0320M09.4" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E275251" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="86937" e_stop="86972"/>
          <exon e_start="87044" e_stop="87101"/>
          <exon e_start="88157" e_stop="88381"/>
          <exon e_start="88463" e_stop="88598"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTATCAACAATAATTAGCAATAAAATAGACTAACAGGTACCACTTTGCAATTTTTATTTGATCATTTTTCATCTATATATAAGTATGAATTTTCCTTTTGTAAACAGAACAATCCAACTACAAACACTGAGGCACACTTTTGTATTTCAACAGCCTTCTTTCAAGGTAAACAACTTTAATTTCAGTTCTTAATCATTTTTCCAGGTACCCCATATGGGGTAGATGTGTTTATATGCACTTCTATATGTTGATTGGAGTTATGGGGGAAGCGGGTGTTTCTGCTTTTCTTCTCTGTGTTTGAGGGTTTTGTGATTTTTGAAACTTTTTATACAAGATGGCTAATTTATGATCTTAAAGGAATTCTTGAGTTTGTGGTTTACTAGTCTAAGATATGTTTGTATGGTGATCAAGAAAATGGAAAAAAGAAGTGATTTTTATGTTCTTTTGTATAACTTGTGATTGTGTTACTTTGAAAAAAAATGTGTGTAGGGGAAGGAGAAATGGGGAGTCGAACTCTCGAGGAGGAAGTTGAGGTAGTCAATCAACTGAGCTACTAAGATTTCCCATTTTGGTTCAGAGCTTTAGCTGATTGTTTATTTTGTTAAGAGTCTGAAAGGGTTTACTGTTTTTGAGTTTCTTAGGTTGATTGCTTAGATGGTCACTCAATTACTAATAGTTATAGTTATTATCTAAGAAAGTGACTTTCTGCGATAACAATTATTAGTTGAGTGACCATTTGAGAAATCAATTCGAATTTCTTGGTGCCCCTTTTCAGCAATTTGAGCAGCGTCTCATAAAGAGAAAAGGATAAGAAAGGGGATGGGATTCTGAATTTATTGTGTTTTGCGAGATTGTAAGTTCATGTGATGAACTATGAATTGTGTCTGTGCAAGAATGAGAAGGAATTTCACTAAACGGAAAAGATAAATACAACAAGCAATGCTGTAACTAATGTACCGAAGCGGAGACTGTATTGTCTATTTTCTGCAGAGTAGGTATATTTCTCTGTACAAACAGGAACATGGAGCATATGTTAGTGTTATTCAATTGGATATATTGACTGCGTCATTTACATTTTATCTGAATATTTTAGTGAACGTATCATGTGCTTTGTTGAAAAAATGTCATCTTCTTTAGATGCAGTATCATGTTCATTTAGGCTTCTGGTAAAAGAGGATGAAAGGTTATACTAACATTCTGCACTTACTGGTTGTTTCCAGCAAAGTATACGAATGGCTCGTTCCGCTCTGGATGAGATGTCAGCAACAGGTGCTTTTGAGAGAACTGCTTCAACCTTCCGTAATATAGTCTCAAGGGAACCCGGCTCAGTTTTTCCAGTCGAATCTGGGAGGTACCACCTCTACATATCATATGCTTGCCCATGGGCATCAAGGTGCCTGGCTTACTTGAAGATTAAAGGCCTTGATCAAGCCATTGATTTCACAGTAAGAAGTTGAATGAACTACTTGTATCTTGGACTCAAGTTTGGACTCCTAACAATCTGTTTCCGTTGTGTTGGCTTGCAGTCTGTTAAACCTGTTTGGGAGAGGACGAAGGACAGCGATGAGCACACGGGATGGGTTTTTGCTTCATCAAGCACCGAGGAAGCAGGAGCTGATCTTGATCCTCTTAATGGAGCCAAAAGCATACGGGAGCTGTATG</genome_strand>
        <mrna_strand>GTATCAACAATAATTAGCAATAAAATAGACTAACAG.......................................................................AACAATCCAACTACAAACACTGAGGCACACTTTTGTATTTCAACAGCCTTCTTTCAAG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAAAGTATACGAATGGCTCGTTCCGCTCTGGATGAGATGTCAGCAACAGGTGCTTTTGAGAGAACTGCTTCAACCTTCCGTAATATAGTCTCAAGGGAACCCGGCTCAGTTTTTCCAGTCGAATCTGGGAGGTACCACCTCTACATATCATATGCTTGCCCATGGGCATCAAGGTGCCTGGCTTACTTGAAGATTAAAGGCCTTGATCAAGCCATTGATTTCACA.................................................................................TCTGTTAAACCTGTTTGGGAGAGGACGAAGGACAGCGATGAGCACACGGGATGGGTTTTTGCTTCATCAAGCACCGAGGAAGCAGGAGCTGATCTTGATCCTCTTAATGGAGCCAAAAGCATACGGGAGCTGTATG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0320M09-0CleD/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E723398" ref_strand="+" ref_description="SGN-E723398 [FC20BE03]">
      <seq>gcgaattggcggccaatcggccgaattgatcaacaataattacccataaaatagactaacagaacaatccaactacaaacactgaggcacacttctgtatttcaacagccttctttcaagcaaagtatacgaatggctcgttccgctctggatgagatgtcagcaacaggtgcttttgagagaactgcttcaaccttccgtaatatagtctcaagggaacccggctcagtttttccagtcgaatctgggaggtaccacctctacatatcatatgcttgcccatgggcatcaaggtgcctggcttacttgaagattaaaggccttgatcaagccattgatttcacatctgttaaacctgtttgggagaggacgaaggacagcgatgagcacacgggatgggtttttgcttcatcaagcaccgaggaagcaggagctgatcttgatcctcttaatggagccaaaagcatacgggagctgtatgagcttgcaagtacaaactattctgggaaatacactgttccggttctttgggataagaaactgaagacaatcgtgaacaacgagagtgcagaaataatacgcatgtttaatagtgaatttaatgatatagctgagaatgcagctttggacctttatcctcctcatttgcaatccctaatcaatgaagcaaatgaatggatatatgatggaataaacaacggagtgtatcaatgtggttttgcaaagaagcaagagccttatgatgaggctgtgcaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0320M09-0CleD/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0320M09.4" temp_strand="+" temp_description="C02HBa0320M09.4  AC215438.3 htgs_phase:3 submitted_to_sgn_as:C02HBa0320M09 sequenced_by:kribb upload_account_name:korea">
        <position start="86634" stop="89257"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="86938" g_stop="86972" g_length="35"/>
          <reference_exon_boundary r_type="cDNA" r_start="28" r_stop="62" r_length="35" r_score="0.914"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="86973" i_stop="87043" i_length="71">
            <donor d_prob="0.956" d_score="0.00"/>
            <acceptor a_prob="0.976" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="87044" g_stop="87101" g_length="58"/>
          <reference_exon_boundary r_type="cDNA" r_start="63" r_stop="120" r_length="58" r_score="0.983"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="87102" i_stop="88156" i_length="1055">
            <donor d_prob="0.996" d_score="0.98"/>
            <acceptor a_prob="0.816" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="88157" g_stop="88381" g_length="225"/>
          <reference_exon_boundary r_type="cDNA" r_start="121" r_stop="345" r_length="225" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="88382" i_stop="88462" i_length="81">
            <donor d_prob="0.966" d_score="1.00"/>
            <acceptor a_prob="0.988" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="88463" g_stop="88639" g_length="177"/>
          <reference_exon_boundary r_type="cDNA" r_start="346" r_stop="522" r_length="177" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="88640" i_stop="88731" i_length="92">
            <donor d_prob="0.896" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="88732" g_stop="88956" g_length="225"/>
          <reference_exon_boundary r_type="cDNA" r_start="523" r_stop="747" r_length="225" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="88957" i_stop="89067" i_length="111">
            <donor d_prob="0.000" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="89068" g_stop="89078" g_length="11"/>
          <reference_exon_boundary r_type="cDNA" r_start="748" r_stop="758" r_length="11" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0320M09.4" gen_strand="+" ref_id="SGN-E723398" ref_strand="+">
        <total_alignment_score>0.999</total_alignment_score>
        <cumulative_length_of_scored_exons>731</cumulative_length_of_scored_exons>
        <coverage percentage="0.964" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0320M09.4" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E723398" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="86938" e_stop="86972"/>
          <exon e_start="87044" e_stop="87101"/>
          <exon e_start="88157" e_stop="88381"/>
          <exon e_start="88463" e_stop="88639"/>
          <exon e_start="88732" e_stop="88956"/>
          <exon e_start="89068" e_stop="89078"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TATCAACAATAATTAGCAATAAAATAGACTAACAGGTACCACTTTGCAATTTTTATTTGATCATTTTTCATCTATATATAAGTATGAATTTTCCTTTTGTAAACAGAACAATCCAACTACAAACACTGAGGCACACTTTTGTATTTCAACAGCCTTCTTTCAAGGTAAACAACTTTAATTTCAGTTCTTAATCATTTTTCCAGGTACCCCATATGGGGTAGATGTGTTTATATGCACTTCTATATGTTGATTGGAGTTATGGGGGAAGCGGGTGTTTCTGCTTTTCTTCTCTGTGTTTGAGGGTTTTGTGATTTTTGAAACTTTTTATACAAGATGGCTAATTTATGATCTTAAAGGAATTCTTGAGTTTGTGGTTTACTAGTCTAAGATATGTTTGTATGGTGATCAAGAAAATGGAAAAAAGAAGTGATTTTTATGTTCTTTTGTATAACTTGTGATTGTGTTACTTTGAAAAAAAATGTGTGTAGGGGAAGGAGAAATGGGGAGTCGAACTCTCGAGGAGGAAGTTGAGGTAGTCAATCAACTGAGCTACTAAGATTTCCCATTTTGGTTCAGAGCTTTAGCTGATTGTTTATTTTGTTAAGAGTCTGAAAGGGTTTACTGTTTTTGAGTTTCTTAGGTTGATTGCTTAGATGGTCACTCAATTACTAATAGTTATAGTTATTATCTAAGAAAGTGACTTTCTGCGATAACAATTATTAGTTGAGTGACCATTTGAGAAATCAATTCGAATTTCTTGGTGCCCCTTTTCAGCAATTTGAGCAGCGTCTCATAAAGAGAAAAGGATAAGAAAGGGGATGGGATTCTGAATTTATTGTGTTTTGCGAGATTGTAAGTTCATGTGATGAACTATGAATTGTGTCTGTGCAAGAATGAGAAGGAATTTCACTAAACGGAAAAGATAAATACAACAAGCAATGCTGTAACTAATGTACCGAAGCGGAGACTGTATTGTCTATTTTCTGCAGAGTAGGTATATTTCTCTGTACAAACAGGAACATGGAGCATATGTTAGTGTTATTCAATTGGATATATTGACTGCGTCATTTACATTTTATCTGAATATTTTAGTGAACGTATCATGTGCTTTGTTGAAAAAATGTCATCTTCTTTAGATGCAGTATCATGTTCATTTAGGCTTCTGGTAAAAGAGGATGAAAGGTTATACTAACATTCTGCACTTACTGGTTGTTTCCAGCAAAGTATACGAATGGCTCGTTCCGCTCTGGATGAGATGTCAGCAACAGGTGCTTTTGAGAGAACTGCTTCAACCTTCCGTAATATAGTCTCAAGGGAACCCGGCTCAGTTTTTCCAGTCGAATCTGGGAGGTACCACCTCTACATATCATATGCTTGCCCATGGGCATCAAGGTGCCTGGCTTACTTGAAGATTAAAGGCCTTGATCAAGCCATTGATTTCACAGTAAGAAGTTGAATGAACTACTTGTATCTTGGACTCAAGTTTGGACTCCTAACAATCTGTTTCCGTTGTGTTGGCTTGCAGTCTGTTAAACCTGTTTGGGAGAGGACGAAGGACAGCGATGAGCACACGGGATGGGTTTTTGCTTCATCAAGCACCGAGGAAGCAGGAGCTGATCTTGATCCTCTTAATGGAGCCAAAAGCATACGGGAGCTGTATGAGCTTGCAAGTACAAACTATTCTGGGAAATACACTGTTCCGGTATTGTTTATCAATAAATAGAATCTCTAATAACATTTATTTGCTTGGTCTGTTCATATTTTTATTGATTGATGGTCTGGTTTTTGTTATAGGTTCTTTGGGATAAGAAACTGAAGACAATCGTGAACAACGAGAGTGCAGAAATAATACGCATGTTTAATAGTGAATTTAATGATATAGCTGAGAATGCAGCTTTGGACCTTTATCCTCCTCATTTGCAATCCCTAATCAATGAAGCAAATGAATGGATATATGATGGAATAAACAACGGAGTGTATCAATGTGGTTTTGCAAAGAAGCAAGAGCCTTATGATGAGGTAATCAGAAATAGACAACAGAACTCGAAGCCGTTTGCTAAACATCTTAAACCTTATAGAACTTCAATCAGTTCTATCTGAGGAAAAGTGATTACCTTTTTGTCCTTGCAGGCTGTGCAAAA</genome_strand>
        <mrna_strand>GATCAACAATAATTACCCATAAAATAGACTAACAG.......................................................................AACAATCCAACTACAAACACTGAGGCACACTTCTGTATTTCAACAGCCTTCTTTCAAG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAAAGTATACGAATGGCTCGTTCCGCTCTGGATGAGATGTCAGCAACAGGTGCTTTTGAGAGAACTGCTTCAACCTTCCGTAATATAGTCTCAAGGGAACCCGGCTCAGTTTTTCCAGTCGAATCTGGGAGGTACCACCTCTACATATCATATGCTTGCCCATGGGCATCAAGGTGCCTGGCTTACTTGAAGATTAAAGGCCTTGATCAAGCCATTGATTTCACA.................................................................................TCTGTTAAACCTGTTTGGGAGAGGACGAAGGACAGCGATGAGCACACGGGATGGGTTTTTGCTTCATCAAGCACCGAGGAAGCAGGAGCTGATCTTGATCCTCTTAATGGAGCCAAAAGCATACGGGAGCTGTATGAGCTTGCAAGTACAAACTATTCTGGGAAATACACTGTTCCG............................................................................................GTTCTTTGGGATAAGAAACTGAAGACAATCGTGAACAACGAGAGTGCAGAAATAATACGCATGTTTAATAGTGAATTTAATGATATAGCTGAGAATGCAGCTTTGGACCTTTATCCTCCTCATTTGCAATCCCTAATCAATGAAGCAAATGAATGGATATATGATGGAATAAACAACGGAGTGTATCAATGTGGTTTTGCAAAGAAGCAAGAGCCTTATGATGAG...............................................................................................................GCTGTGCAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0320M09-0CleD/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E318197" ref_strand="+" ref_description="SGN-E318197 [cTOA-29-L19]">
      <seq>aaacactgaggcacacttttgtatttcaacagccttctttcaagcaaagtatacgaatggctcgttccgctctggatgagatgtcagcaacaggtgcttttgagagaactgcttcaaccttccgtaatatagtctcaagggaacccggctcagtttttccagtcgaatctgggaggtaccacctctacatatcatatgcttgcccatgggcatcaaggtgcctggcttacttgaagattaaaggccttgatcaagccattgatttcacatctgttaaacctgtttgggagaggacgaaggacagcgatgagcacacgggatgggtttttgcttcatcaagcaccgaggaagcaggagctgatcttgatcctcttaatggagccaaaagcatacgggagctgtatgagcttgcaagtacaaactattctgggaaatacactgttccggttctttgggataagaaactgaagacaatcgtgaacaacgagagtgcagaaataatacgcatgtttaatagtgaatttaatgatatagctgagaatgcagctttggacctttatcctcctcatttgcaatccctaatcaatgaagcaaatgaatggatatatgatggaataaacaacggagtgtatcaatgtggntttgcaaagaagcaagagccttatgat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0320M09-0CleD/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0320M09.4" temp_strand="+" temp_description="C02HBa0320M09.4  AC215438.3 htgs_phase:3 submitted_to_sgn_as:C02HBa0320M09 sequenced_by:kribb upload_account_name:korea">
        <position start="86758" stop="89253"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="87058" g_stop="87101" g_length="44"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="44" r_length="44" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="87102" i_stop="88156" i_length="1055">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.816" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="88157" g_stop="88381" g_length="225"/>
          <reference_exon_boundary r_type="cDNA" r_start="45" r_stop="269" r_length="225" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="88382" i_stop="88462" i_length="81">
            <donor d_prob="0.966" d_score="1.00"/>
            <acceptor a_prob="0.988" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="88463" g_stop="88639" g_length="177"/>
          <reference_exon_boundary r_type="cDNA" r_start="270" r_stop="446" r_length="177" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="88640" i_stop="88731" i_length="92">
            <donor d_prob="0.896" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="88732" g_stop="88953" g_length="222"/>
          <reference_exon_boundary r_type="cDNA" r_start="447" r_stop="668" r_length="222" r_score="0.995"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0320M09.4" gen_strand="+" ref_id="SGN-E318197" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>668</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0320M09.4" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E318197" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="87058" e_stop="87101"/>
          <exon e_start="88157" e_stop="88381"/>
          <exon e_start="88463" e_stop="88639"/>
          <exon e_start="88732" e_stop="88953"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAACACTGAGGCACACTTTTGTATTTCAACAGCCTTCTTTCAAGGTAAACAACTTTAATTTCAGTTCTTAATCATTTTTCCAGGTACCCCATATGGGGTAGATGTGTTTATATGCACTTCTATATGTTGATTGGAGTTATGGGGGAAGCGGGTGTTTCTGCTTTTCTTCTCTGTGTTTGAGGGTTTTGTGATTTTTGAAACTTTTTATACAAGATGGCTAATTTATGATCTTAAAGGAATTCTTGAGTTTGTGGTTTACTAGTCTAAGATATGTTTGTATGGTGATCAAGAAAATGGAAAAAAGAAGTGATTTTTATGTTCTTTTGTATAACTTGTGATTGTGTTACTTTGAAAAAAAATGTGTGTAGGGGAAGGAGAAATGGGGAGTCGAACTCTCGAGGAGGAAGTTGAGGTAGTCAATCAACTGAGCTACTAAGATTTCCCATTTTGGTTCAGAGCTTTAGCTGATTGTTTATTTTGTTAAGAGTCTGAAAGGGTTTACTGTTTTTGAGTTTCTTAGGTTGATTGCTTAGATGGTCACTCAATTACTAATAGTTATAGTTATTATCTAAGAAAGTGACTTTCTGCGATAACAATTATTAGTTGAGTGACCATTTGAGAAATCAATTCGAATTTCTTGGTGCCCCTTTTCAGCAATTTGAGCAGCGTCTCATAAAGAGAAAAGGATAAGAAAGGGGATGGGATTCTGAATTTATTGTGTTTTGCGAGATTGTAAGTTCATGTGATGAACTATGAATTGTGTCTGTGCAAGAATGAGAAGGAATTTCACTAAACGGAAAAGATAAATACAACAAGCAATGCTGTAACTAATGTACCGAAGCGGAGACTGTATTGTCTATTTTCTGCAGAGTAGGTATATTTCTCTGTACAAACAGGAACATGGAGCATATGTTAGTGTTATTCAATTGGATATATTGACTGCGTCATTTACATTTTATCTGAATATTTTAGTGAACGTATCATGTGCTTTGTTGAAAAAATGTCATCTTCTTTAGATGCAGTATCATGTTCATTTAGGCTTCTGGTAAAAGAGGATGAAAGGTTATACTAACATTCTGCACTTACTGGTTGTTTCCAGCAAAGTATACGAATGGCTCGTTCCGCTCTGGATGAGATGTCAGCAACAGGTGCTTTTGAGAGAACTGCTTCAACCTTCCGTAATATAGTCTCAAGGGAACCCGGCTCAGTTTTTCCAGTCGAATCTGGGAGGTACCACCTCTACATATCATATGCTTGCCCATGGGCATCAAGGTGCCTGGCTTACTTGAAGATTAAAGGCCTTGATCAAGCCATTGATTTCACAGTAAGAAGTTGAATGAACTACTTGTATCTTGGACTCAAGTTTGGACTCCTAACAATCTGTTTCCGTTGTGTTGGCTTGCAGTCTGTTAAACCTGTTTGGGAGAGGACGAAGGACAGCGATGAGCACACGGGATGGGTTTTTGCTTCATCAAGCACCGAGGAAGCAGGAGCTGATCTTGATCCTCTTAATGGAGCCAAAAGCATACGGGAGCTGTATGAGCTTGCAAGTACAAACTATTCTGGGAAATACACTGTTCCGGTATTGTTTATCAATAAATAGAATCTCTAATAACATTTATTTGCTTGGTCTGTTCATATTTTTATTGATTGATGGTCTGGTTTTTGTTATAGGTTCTTTGGGATAAGAAACTGAAGACAATCGTGAACAACGAGAGTGCAGAAATAATACGCATGTTTAATAGTGAATTTAATGATATAGCTGAGAATGCAGCTTTGGACCTTTATCCTCCTCATTTGCAATCCCTAATCAATGAAGCAAATGAATGGATATATGATGGAATAAACAACGGAGTGTATCAATGTGGTTTTGCAAAGAAGCAAGAGCCTTATGAT</genome_strand>
        <mrna_strand>AAACACTGAGGCACACTTTTGTATTTCAACAGCCTTCTTTCAAG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAAAGTATACGAATGGCTCGTTCCGCTCTGGATGAGATGTCAGCAACAGGTGCTTTTGAGAGAACTGCTTCAACCTTCCGTAATATAGTCTCAAGGGAACCCGGCTCAGTTTTTCCAGTCGAATCTGGGAGGTACCACCTCTACATATCATATGCTTGCCCATGGGCATCAAGGTGCCTGGCTTACTTGAAGATTAAAGGCCTTGATCAAGCCATTGATTTCACA.................................................................................TCTGTTAAACCTGTTTGGGAGAGGACGAAGGACAGCGATGAGCACACGGGATGGGTTTTTGCTTCATCAAGCACCGAGGAAGCAGGAGCTGATCTTGATCCTCTTAATGGAGCCAAAAGCATACGGGAGCTGTATGAGCTTGCAAGTACAAACTATTCTGGGAAATACACTGTTCCG............................................................................................GTTCTTTGGGATAAGAAACTGAAGACAATCGTGAACAACGAGAGTGCAGAAATAATACGCATGTTTAATAGTGAATTTAATGATATAGCTGAGAATGCAGCTTTGGACCTTTATCCTCCTCATTTGCAATCCCTAATCAATGAAGCAAATGAATGGATATATGATGGAATAAACAACGGAGTGTATCAATGTGGNTTTGCAAAGAAGCAAGAGCCTTATGAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0320M09-0CleD/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E312637" ref_strand="+" ref_description="SGN-E312637 [cLEZ-20-B20]">
      <seq>aaacactgaggcacacttttgtatttcaacagccttctttcaagcaaagtatacgaatggctcgttccgctctggatgagatgtcagcaacaggtgcttttgagagaactgcttcaaccttccgtaatatagtctcaagggaacccggctcagtttttccagtcgaatctgggaggtaccacctctacatatcatatgcttgcccatgggcatcaaggtgcctggcttacttgaagattaaaggccttgatcaagccattgatttcacatctgttaaacctgtttgggagaggacgaaggacagcgatgagcacacgggatgggtttttgcttcatcaagcaccgaggaagcaggagctgatcttgatcctcttaatggagccaaaagcatacgggagctgtatgagcttgcaagtacaaactattctgggaaatacactgttccggttctttgggataagaaactgaagacaatcgtgaacaacgagagtgcagaaataatacgcatgtttaatagtgaatttaatgatatagctg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0320M09-0CleD/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0320M09.4" temp_strand="+" temp_description="C02HBa0320M09.4  AC215438.3 htgs_phase:3 submitted_to_sgn_as:C02HBa0320M09 sequenced_by:kribb upload_account_name:korea">
        <position start="86758" stop="89122"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="87058" g_stop="87101" g_length="44"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="44" r_length="44" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="87102" i_stop="88156" i_length="1055">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.816" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="88157" g_stop="88381" g_length="225"/>
          <reference_exon_boundary r_type="cDNA" r_start="45" r_stop="269" r_length="225" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="88382" i_stop="88462" i_length="81">
            <donor d_prob="0.966" d_score="1.00"/>
            <acceptor a_prob="0.988" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="88463" g_stop="88639" g_length="177"/>
          <reference_exon_boundary r_type="cDNA" r_start="270" r_stop="446" r_length="177" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="88640" i_stop="88731" i_length="92">
            <donor d_prob="0.896" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="88732" g_stop="88822" g_length="91"/>
          <reference_exon_boundary r_type="cDNA" r_start="447" r_stop="537" r_length="91" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0320M09.4" gen_strand="+" ref_id="SGN-E312637" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>537</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0320M09.4" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E312637" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="87058" e_stop="87101"/>
          <exon e_start="88157" e_stop="88381"/>
          <exon e_start="88463" e_stop="88639"/>
          <exon e_start="88732" e_stop="88822"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAACACTGAGGCACACTTTTGTATTTCAACAGCCTTCTTTCAAGGTAAACAACTTTAATTTCAGTTCTTAATCATTTTTCCAGGTACCCCATATGGGGTAGATGTGTTTATATGCACTTCTATATGTTGATTGGAGTTATGGGGGAAGCGGGTGTTTCTGCTTTTCTTCTCTGTGTTTGAGGGTTTTGTGATTTTTGAAACTTTTTATACAAGATGGCTAATTTATGATCTTAAAGGAATTCTTGAGTTTGTGGTTTACTAGTCTAAGATATGTTTGTATGGTGATCAAGAAAATGGAAAAAAGAAGTGATTTTTATGTTCTTTTGTATAACTTGTGATTGTGTTACTTTGAAAAAAAATGTGTGTAGGGGAAGGAGAAATGGGGAGTCGAACTCTCGAGGAGGAAGTTGAGGTAGTCAATCAACTGAGCTACTAAGATTTCCCATTTTGGTTCAGAGCTTTAGCTGATTGTTTATTTTGTTAAGAGTCTGAAAGGGTTTACTGTTTTTGAGTTTCTTAGGTTGATTGCTTAGATGGTCACTCAATTACTAATAGTTATAGTTATTATCTAAGAAAGTGACTTTCTGCGATAACAATTATTAGTTGAGTGACCATTTGAGAAATCAATTCGAATTTCTTGGTGCCCCTTTTCAGCAATTTGAGCAGCGTCTCATAAAGAGAAAAGGATAAGAAAGGGGATGGGATTCTGAATTTATTGTGTTTTGCGAGATTGTAAGTTCATGTGATGAACTATGAATTGTGTCTGTGCAAGAATGAGAAGGAATTTCACTAAACGGAAAAGATAAATACAACAAGCAATGCTGTAACTAATGTACCGAAGCGGAGACTGTATTGTCTATTTTCTGCAGAGTAGGTATATTTCTCTGTACAAACAGGAACATGGAGCATATGTTAGTGTTATTCAATTGGATATATTGACTGCGTCATTTACATTTTATCTGAATATTTTAGTGAACGTATCATGTGCTTTGTTGAAAAAATGTCATCTTCTTTAGATGCAGTATCATGTTCATTTAGGCTTCTGGTAAAAGAGGATGAAAGGTTATACTAACATTCTGCACTTACTGGTTGTTTCCAGCAAAGTATACGAATGGCTCGTTCCGCTCTGGATGAGATGTCAGCAACAGGTGCTTTTGAGAGAACTGCTTCAACCTTCCGTAATATAGTCTCAAGGGAACCCGGCTCAGTTTTTCCAGTCGAATCTGGGAGGTACCACCTCTACATATCATATGCTTGCCCATGGGCATCAAGGTGCCTGGCTTACTTGAAGATTAAAGGCCTTGATCAAGCCATTGATTTCACAGTAAGAAGTTGAATGAACTACTTGTATCTTGGACTCAAGTTTGGACTCCTAACAATCTGTTTCCGTTGTGTTGGCTTGCAGTCTGTTAAACCTGTTTGGGAGAGGACGAAGGACAGCGATGAGCACACGGGATGGGTTTTTGCTTCATCAAGCACCGAGGAAGCAGGAGCTGATCTTGATCCTCTTAATGGAGCCAAAAGCATACGGGAGCTGTATGAGCTTGCAAGTACAAACTATTCTGGGAAATACACTGTTCCGGTATTGTTTATCAATAAATAGAATCTCTAATAACATTTATTTGCTTGGTCTGTTCATATTTTTATTGATTGATGGTCTGGTTTTTGTTATAGGTTCTTTGGGATAAGAAACTGAAGACAATCGTGAACAACGAGAGTGCAGAAATAATACGCATGTTTAATAGTGAATTTAATGATATAGCTG</genome_strand>
        <mrna_strand>AAACACTGAGGCACACTTTTGTATTTCAACAGCCTTCTTTCAAG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAAAGTATACGAATGGCTCGTTCCGCTCTGGATGAGATGTCAGCAACAGGTGCTTTTGAGAGAACTGCTTCAACCTTCCGTAATATAGTCTCAAGGGAACCCGGCTCAGTTTTTCCAGTCGAATCTGGGAGGTACCACCTCTACATATCATATGCTTGCCCATGGGCATCAAGGTGCCTGGCTTACTTGAAGATTAAAGGCCTTGATCAAGCCATTGATTTCACA.................................................................................TCTGTTAAACCTGTTTGGGAGAGGACGAAGGACAGCGATGAGCACACGGGATGGGTTTTTGCTTCATCAAGCACCGAGGAAGCAGGAGCTGATCTTGATCCTCTTAATGGAGCCAAAAGCATACGGGAGCTGTATGAGCTTGCAAGTACAAACTATTCTGGGAAATACACTGTTCCG............................................................................................GTTCTTTGGGATAAGAAACTGAAGACAATCGTGAACAACGAGAGTGCAGAAATAATACGCATGTTTAATAGTGAATTTAATGATATAGCTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0320M09-0CleD/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E310035" ref_strand="+" ref_description="SGN-E310035 [cLEZ-8-G15]">
      <seq>aaacactgaggcacacttttgtatttcaacagccttctttcaagcaaagtatacgaatggctcgttccgctctggatgagatgtcagcaacaggtgcttttgagagaactgcttcaaccttccgtaatatagtctcaagggaacccggctcagtttttccagtcgaatctgggaggtaccacctctacatatcatatgcttgcccatgggcatcaaggtgcctggcttacttgaagattaaaggccttgatcaagccattgatttcacatctgttaaacctgtttgggagaggacgaaggacagcgatgagcacacgggatgggtttttgct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0320M09-0CleD/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0320M09.4" temp_strand="+" temp_description="C02HBa0320M09.4  AC215438.3 htgs_phase:3 submitted_to_sgn_as:C02HBa0320M09 sequenced_by:kribb upload_account_name:korea">
        <position start="86758" stop="88825"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="87058" g_stop="87101" g_length="44"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="44" r_length="44" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="87102" i_stop="88156" i_length="1055">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.816" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="88157" g_stop="88381" g_length="225"/>
          <reference_exon_boundary r_type="cDNA" r_start="45" r_stop="269" r_length="225" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="88382" i_stop="88462" i_length="81">
            <donor d_prob="0.966" d_score="1.00"/>
            <acceptor a_prob="0.988" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="88463" g_stop="88525" g_length="63"/>
          <reference_exon_boundary r_type="cDNA" r_start="270" r_stop="332" r_length="63" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0320M09.4" gen_strand="+" ref_id="SGN-E310035" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>332</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0320M09.4" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E310035" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="87058" e_stop="87101"/>
          <exon e_start="88157" e_stop="88381"/>
          <exon e_start="88463" e_stop="88525"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAACACTGAGGCACACTTTTGTATTTCAACAGCCTTCTTTCAAGGTAAACAACTTTAATTTCAGTTCTTAATCATTTTTCCAGGTACCCCATATGGGGTAGATGTGTTTATATGCACTTCTATATGTTGATTGGAGTTATGGGGGAAGCGGGTGTTTCTGCTTTTCTTCTCTGTGTTTGAGGGTTTTGTGATTTTTGAAACTTTTTATACAAGATGGCTAATTTATGATCTTAAAGGAATTCTTGAGTTTGTGGTTTACTAGTCTAAGATATGTTTGTATGGTGATCAAGAAAATGGAAAAAAGAAGTGATTTTTATGTTCTTTTGTATAACTTGTGATTGTGTTACTTTGAAAAAAAATGTGTGTAGGGGAAGGAGAAATGGGGAGTCGAACTCTCGAGGAGGAAGTTGAGGTAGTCAATCAACTGAGCTACTAAGATTTCCCATTTTGGTTCAGAGCTTTAGCTGATTGTTTATTTTGTTAAGAGTCTGAAAGGGTTTACTGTTTTTGAGTTTCTTAGGTTGATTGCTTAGATGGTCACTCAATTACTAATAGTTATAGTTATTATCTAAGAAAGTGACTTTCTGCGATAACAATTATTAGTTGAGTGACCATTTGAGAAATCAATTCGAATTTCTTGGTGCCCCTTTTCAGCAATTTGAGCAGCGTCTCATAAAGAGAAAAGGATAAGAAAGGGGATGGGATTCTGAATTTATTGTGTTTTGCGAGATTGTAAGTTCATGTGATGAACTATGAATTGTGTCTGTGCAAGAATGAGAAGGAATTTCACTAAACGGAAAAGATAAATACAACAAGCAATGCTGTAACTAATGTACCGAAGCGGAGACTGTATTGTCTATTTTCTGCAGAGTAGGTATATTTCTCTGTACAAACAGGAACATGGAGCATATGTTAGTGTTATTCAATTGGATATATTGACTGCGTCATTTACATTTTATCTGAATATTTTAGTGAACGTATCATGTGCTTTGTTGAAAAAATGTCATCTTCTTTAGATGCAGTATCATGTTCATTTAGGCTTCTGGTAAAAGAGGATGAAAGGTTATACTAACATTCTGCACTTACTGGTTGTTTCCAGCAAAGTATACGAATGGCTCGTTCCGCTCTGGATGAGATGTCAGCAACAGGTGCTTTTGAGAGAACTGCTTCAACCTTCCGTAATATAGTCTCAAGGGAACCCGGCTCAGTTTTTCCAGTCGAATCTGGGAGGTACCACCTCTACATATCATATGCTTGCCCATGGGCATCAAGGTGCCTGGCTTACTTGAAGATTAAAGGCCTTGATCAAGCCATTGATTTCACAGTAAGAAGTTGAATGAACTACTTGTATCTTGGACTCAAGTTTGGACTCCTAACAATCTGTTTCCGTTGTGTTGGCTTGCAGTCTGTTAAACCTGTTTGGGAGAGGACGAAGGACAGCGATGAGCACACGGGATGGGTTTTTGCT</genome_strand>
        <mrna_strand>AAACACTGAGGCACACTTTTGTATTTCAACAGCCTTCTTTCAAG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAAAGTATACGAATGGCTCGTTCCGCTCTGGATGAGATGTCAGCAACAGGTGCTTTTGAGAGAACTGCTTCAACCTTCCGTAATATAGTCTCAAGGGAACCCGGCTCAGTTTTTCCAGTCGAATCTGGGAGGTACCACCTCTACATATCATATGCTTGCCCATGGGCATCAAGGTGCCTGGCTTACTTGAAGATTAAAGGCCTTGATCAAGCCATTGATTTCACA.................................................................................TCTGTTAAACCTGTTTGGGAGAGGACGAAGGACAGCGATGAGCACACGGGATGGGTTTTTGCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0320M09-0CleD/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E549253" ref_strand="+" ref_description="SGN-E549253 [TUS-68-L10]">
      <seq>cactgaggcacacttttgtatttcaacagccttctttcaagcaaagtatacgaatggctcgttccgctctggatgagatgtcagcaacaggtgcttttgagagaactgcttcaaccttccgtaatatagtctcaagggaacccggctcagtttttccagtcgaatctgggaggtaccacctctacatatcatatgcttgcccatgggcatcaaggtgcctggcttacttgaagattaaaggccttgatcaagccattgatttcacatctgttaaacctgtttgggagaggacgaaggacagcgatgagcacacgggatgggtttttgcttcatcaagcaccgaggaagcaggagctgatcttgatcctcttaatggagccaaaagcatacgggagctgtatgagcttgcaagtacaaactattctgggaaatacactgttccggttctttgggataagaaactgaagacaatcgtgaacaacgagagtgcagaaataatacgcatgtttaatagtgaatttaatgatatagctgagaatgcagctttggacctttatcctcctcatttgcaatccctaatcaatgaagcaaatgaatggatatatgatggaataaacaacggagtgtatcaatgtggttttgcaaagaagcaagagccttatgatgaggctgtgcaaaaagtatacaaagctttggacaaatgtgaggagatactgagcaagcagagatacatatgtggagatcaagtgactgaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0320M09-0CleD/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0320M09.4" temp_strand="+" temp_description="C02HBa0320M09.4  AC215438.3 htgs_phase:3 submitted_to_sgn_as:C02HBa0320M09 sequenced_by:kribb upload_account_name:korea">
        <position start="86761" stop="89454"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="87061" g_stop="87101" g_length="41"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="41" r_length="41" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="87102" i_stop="88156" i_length="1055">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.816" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="88157" g_stop="88381" g_length="225"/>
          <reference_exon_boundary r_type="cDNA" r_start="42" r_stop="266" r_length="225" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="88382" i_stop="88462" i_length="81">
            <donor d_prob="0.966" d_score="1.00"/>
            <acceptor a_prob="0.988" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="88463" g_stop="88639" g_length="177"/>
          <reference_exon_boundary r_type="cDNA" r_start="267" r_stop="443" r_length="177" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="88640" i_stop="88731" i_length="92">
            <donor d_prob="0.896" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="88732" g_stop="88956" g_length="225"/>
          <reference_exon_boundary r_type="cDNA" r_start="444" r_stop="668" r_length="225" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="88957" i_stop="89067" i_length="111">
            <donor d_prob="0.000" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="89068" g_stop="89154" g_length="87"/>
          <reference_exon_boundary r_type="cDNA" r_start="669" r_stop="755" r_length="87" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0320M09.4" gen_strand="+" ref_id="SGN-E549253" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>755</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0320M09.4" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E549253" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="87061" e_stop="87101"/>
          <exon e_start="88157" e_stop="88381"/>
          <exon e_start="88463" e_stop="88639"/>
          <exon e_start="88732" e_stop="88956"/>
          <exon e_start="89068" e_stop="89154"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CACTGAGGCACACTTTTGTATTTCAACAGCCTTCTTTCAAGGTAAACAACTTTAATTTCAGTTCTTAATCATTTTTCCAGGTACCCCATATGGGGTAGATGTGTTTATATGCACTTCTATATGTTGATTGGAGTTATGGGGGAAGCGGGTGTTTCTGCTTTTCTTCTCTGTGTTTGAGGGTTTTGTGATTTTTGAAACTTTTTATACAAGATGGCTAATTTATGATCTTAAAGGAATTCTTGAGTTTGTGGTTTACTAGTCTAAGATATGTTTGTATGGTGATCAAGAAAATGGAAAAAAGAAGTGATTTTTATGTTCTTTTGTATAACTTGTGATTGTGTTACTTTGAAAAAAAATGTGTGTAGGGGAAGGAGAAATGGGGAGTCGAACTCTCGAGGAGGAAGTTGAGGTAGTCAATCAACTGAGCTACTAAGATTTCCCATTTTGGTTCAGAGCTTTAGCTGATTGTTTATTTTGTTAAGAGTCTGAAAGGGTTTACTGTTTTTGAGTTTCTTAGGTTGATTGCTTAGATGGTCACTCAATTACTAATAGTTATAGTTATTATCTAAGAAAGTGACTTTCTGCGATAACAATTATTAGTTGAGTGACCATTTGAGAAATCAATTCGAATTTCTTGGTGCCCCTTTTCAGCAATTTGAGCAGCGTCTCATAAAGAGAAAAGGATAAGAAAGGGGATGGGATTCTGAATTTATTGTGTTTTGCGAGATTGTAAGTTCATGTGATGAACTATGAATTGTGTCTGTGCAAGAATGAGAAGGAATTTCACTAAACGGAAAAGATAAATACAACAAGCAATGCTGTAACTAATGTACCGAAGCGGAGACTGTATTGTCTATTTTCTGCAGAGTAGGTATATTTCTCTGTACAAACAGGAACATGGAGCATATGTTAGTGTTATTCAATTGGATATATTGACTGCGTCATTTACATTTTATCTGAATATTTTAGTGAACGTATCATGTGCTTTGTTGAAAAAATGTCATCTTCTTTAGATGCAGTATCATGTTCATTTAGGCTTCTGGTAAAAGAGGATGAAAGGTTATACTAACATTCTGCACTTACTGGTTGTTTCCAGCAAAGTATACGAATGGCTCGTTCCGCTCTGGATGAGATGTCAGCAACAGGTGCTTTTGAGAGAACTGCTTCAACCTTCCGTAATATAGTCTCAAGGGAACCCGGCTCAGTTTTTCCAGTCGAATCTGGGAGGTACCACCTCTACATATCATATGCTTGCCCATGGGCATCAAGGTGCCTGGCTTACTTGAAGATTAAAGGCCTTGATCAAGCCATTGATTTCACAGTAAGAAGTTGAATGAACTACTTGTATCTTGGACTCAAGTTTGGACTCCTAACAATCTGTTTCCGTTGTGTTGGCTTGCAGTCTGTTAAACCTGTTTGGGAGAGGACGAAGGACAGCGATGAGCACACGGGATGGGTTTTTGCTTCATCAAGCACCGAGGAAGCAGGAGCTGATCTTGATCCTCTTAATGGAGCCAAAAGCATACGGGAGCTGTATGAGCTTGCAAGTACAAACTATTCTGGGAAATACACTGTTCCGGTATTGTTTATCAATAAATAGAATCTCTAATAACATTTATTTGCTTGGTCTGTTCATATTTTTATTGATTGATGGTCTGGTTTTTGTTATAGGTTCTTTGGGATAAGAAACTGAAGACAATCGTGAACAACGAGAGTGCAGAAATAATACGCATGTTTAATAGTGAATTTAATGATATAGCTGAGAATGCAGCTTTGGACCTTTATCCTCCTCATTTGCAATCCCTAATCAATGAAGCAAATGAATGGATATATGATGGAATAAACAACGGAGTGTATCAATGTGGTTTTGCAAAGAAGCAAGAGCCTTATGATGAGGTAATCAGAAATAGACAACAGAACTCGAAGCCGTTTGCTAAACATCTTAAACCTTATAGAACTTCAATCAGTTCTATCTGAGGAAAAGTGATTACCTTTTTGTCCTTGCAGGCTGTGCAAAAAGTATACAAAGCTTTGGACAAATGTGAGGAGATACTGAGCAAGCAGAGATACATATGTGGAGATCAAGTGACTGAA</genome_strand>
        <mrna_strand>CACTGAGGCACACTTTTGTATTTCAACAGCCTTCTTTCAAG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAAAGTATACGAATGGCTCGTTCCGCTCTGGATGAGATGTCAGCAACAGGTGCTTTTGAGAGAACTGCTTCAACCTTCCGTAATATAGTCTCAAGGGAACCCGGCTCAGTTTTTCCAGTCGAATCTGGGAGGTACCACCTCTACATATCATATGCTTGCCCATGGGCATCAAGGTGCCTGGCTTACTTGAAGATTAAAGGCCTTGATCAAGCCATTGATTTCACA.................................................................................TCTGTTAAACCTGTTTGGGAGAGGACGAAGGACAGCGATGAGCACACGGGATGGGTTTTTGCTTCATCAAGCACCGAGGAAGCAGGAGCTGATCTTGATCCTCTTAATGGAGCCAAAAGCATACGGGAGCTGTATGAGCTTGCAAGTACAAACTATTCTGGGAAATACACTGTTCCG............................................................................................GTTCTTTGGGATAAGAAACTGAAGACAATCGTGAACAACGAGAGTGCAGAAATAATACGCATGTTTAATAGTGAATTTAATGATATAGCTGAGAATGCAGCTTTGGACCTTTATCCTCCTCATTTGCAATCCCTAATCAATGAAGCAAATGAATGGATATATGATGGAATAAACAACGGAGTGTATCAATGTGGTTTTGCAAAGAAGCAAGAGCCTTATGATGAG...............................................................................................................GCTGTGCAAAAAGTATACAAAGCTTTGGACAAATGTGAGGAGATACTGAGCAAGCAGAGATACATATGTGGAGATCAAGTGACTGAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0320M09-0CleD/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E312434" ref_strand="+" ref_description="SGN-E312434 [cLEZ-20-G2]">
      <seq>actgaggcacacttttgtatttcaacagccttctttcaagcaaagtatacgaatggctcgttccgctctggatgagatgtcagcaacaggtgcttttgagagaactgcttcaaccttccgtaatatagtctcaagggaacccggctcagtttttccagtcgaatctgggaggtaccacctctacatatcatatgcttgcccatgggcatcaaggtgcctggcttacttgaagattaaaggccttgatcaagccattgatttcacatctgttaaacctgtttgggagaggacgaaggacagcgatgagcacacgggatgggtttttgcttcatcaagcaccgaggaagcaggagctgatcttgatcctcttaatggagccaaaagcatacgggagctgtatgagcttgcaagtacaaactattctgggaaatacactgttccggttctttgggataagaaactgaagacaatcgtgaacaacgagagtgcagaaataatacgcatgtttaatagtgaatgtaatgatatagctgagaatgc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0320M09-0CleD/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0320M09.4" temp_strand="+" temp_description="C02HBa0320M09.4  AC215438.3 htgs_phase:3 submitted_to_sgn_as:C02HBa0320M09 sequenced_by:kribb upload_account_name:korea">
        <position start="86762" stop="89129"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="87062" g_stop="87101" g_length="40"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="40" r_length="40" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="87102" i_stop="88156" i_length="1055">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.816" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="88157" g_stop="88381" g_length="225"/>
          <reference_exon_boundary r_type="cDNA" r_start="41" r_stop="265" r_length="225" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="88382" i_stop="88462" i_length="81">
            <donor d_prob="0.966" d_score="1.00"/>
            <acceptor a_prob="0.988" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="88463" g_stop="88639" g_length="177"/>
          <reference_exon_boundary r_type="cDNA" r_start="266" r_stop="442" r_length="177" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="88640" i_stop="88731" i_length="92">
            <donor d_prob="0.896" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="88732" g_stop="88829" g_length="98"/>
          <reference_exon_boundary r_type="cDNA" r_start="443" r_stop="540" r_length="98" r_score="0.990"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0320M09.4" gen_strand="+" ref_id="SGN-E312434" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>540</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0320M09.4" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E312434" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="87062" e_stop="87101"/>
          <exon e_start="88157" e_stop="88381"/>
          <exon e_start="88463" e_stop="88639"/>
          <exon e_start="88732" e_stop="88829"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACTGAGGCACACTTTTGTATTTCAACAGCCTTCTTTCAAGGTAAACAACTTTAATTTCAGTTCTTAATCATTTTTCCAGGTACCCCATATGGGGTAGATGTGTTTATATGCACTTCTATATGTTGATTGGAGTTATGGGGGAAGCGGGTGTTTCTGCTTTTCTTCTCTGTGTTTGAGGGTTTTGTGATTTTTGAAACTTTTTATACAAGATGGCTAATTTATGATCTTAAAGGAATTCTTGAGTTTGTGGTTTACTAGTCTAAGATATGTTTGTATGGTGATCAAGAAAATGGAAAAAAGAAGTGATTTTTATGTTCTTTTGTATAACTTGTGATTGTGTTACTTTGAAAAAAAATGTGTGTAGGGGAAGGAGAAATGGGGAGTCGAACTCTCGAGGAGGAAGTTGAGGTAGTCAATCAACTGAGCTACTAAGATTTCCCATTTTGGTTCAGAGCTTTAGCTGATTGTTTATTTTGTTAAGAGTCTGAAAGGGTTTACTGTTTTTGAGTTTCTTAGGTTGATTGCTTAGATGGTCACTCAATTACTAATAGTTATAGTTATTATCTAAGAAAGTGACTTTCTGCGATAACAATTATTAGTTGAGTGACCATTTGAGAAATCAATTCGAATTTCTTGGTGCCCCTTTTCAGCAATTTGAGCAGCGTCTCATAAAGAGAAAAGGATAAGAAAGGGGATGGGATTCTGAATTTATTGTGTTTTGCGAGATTGTAAGTTCATGTGATGAACTATGAATTGTGTCTGTGCAAGAATGAGAAGGAATTTCACTAAACGGAAAAGATAAATACAACAAGCAATGCTGTAACTAATGTACCGAAGCGGAGACTGTATTGTCTATTTTCTGCAGAGTAGGTATATTTCTCTGTACAAACAGGAACATGGAGCATATGTTAGTGTTATTCAATTGGATATATTGACTGCGTCATTTACATTTTATCTGAATATTTTAGTGAACGTATCATGTGCTTTGTTGAAAAAATGTCATCTTCTTTAGATGCAGTATCATGTTCATTTAGGCTTCTGGTAAAAGAGGATGAAAGGTTATACTAACATTCTGCACTTACTGGTTGTTTCCAGCAAAGTATACGAATGGCTCGTTCCGCTCTGGATGAGATGTCAGCAACAGGTGCTTTTGAGAGAACTGCTTCAACCTTCCGTAATATAGTCTCAAGGGAACCCGGCTCAGTTTTTCCAGTCGAATCTGGGAGGTACCACCTCTACATATCATATGCTTGCCCATGGGCATCAAGGTGCCTGGCTTACTTGAAGATTAAAGGCCTTGATCAAGCCATTGATTTCACAGTAAGAAGTTGAATGAACTACTTGTATCTTGGACTCAAGTTTGGACTCCTAACAATCTGTTTCCGTTGTGTTGGCTTGCAGTCTGTTAAACCTGTTTGGGAGAGGACGAAGGACAGCGATGAGCACACGGGATGGGTTTTTGCTTCATCAAGCACCGAGGAAGCAGGAGCTGATCTTGATCCTCTTAATGGAGCCAAAAGCATACGGGAGCTGTATGAGCTTGCAAGTACAAACTATTCTGGGAAATACACTGTTCCGGTATTGTTTATCAATAAATAGAATCTCTAATAACATTTATTTGCTTGGTCTGTTCATATTTTTATTGATTGATGGTCTGGTTTTTGTTATAGGTTCTTTGGGATAAGAAACTGAAGACAATCGTGAACAACGAGAGTGCAGAAATAATACGCATGTTTAATAGTGAATTTAATGATATAGCTGAGAATGC</genome_strand>
        <mrna_strand>ACTGAGGCACACTTTTGTATTTCAACAGCCTTCTTTCAAG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAAAGTATACGAATGGCTCGTTCCGCTCTGGATGAGATGTCAGCAACAGGTGCTTTTGAGAGAACTGCTTCAACCTTCCGTAATATAGTCTCAAGGGAACCCGGCTCAGTTTTTCCAGTCGAATCTGGGAGGTACCACCTCTACATATCATATGCTTGCCCATGGGCATCAAGGTGCCTGGCTTACTTGAAGATTAAAGGCCTTGATCAAGCCATTGATTTCACA.................................................................................TCTGTTAAACCTGTTTGGGAGAGGACGAAGGACAGCGATGAGCACACGGGATGGGTTTTTGCTTCATCAAGCACCGAGGAAGCAGGAGCTGATCTTGATCCTCTTAATGGAGCCAAAAGCATACGGGAGCTGTATGAGCTTGCAAGTACAAACTATTCTGGGAAATACACTGTTCCG............................................................................................GTTCTTTGGGATAAGAAACTGAAGACAATCGTGAACAACGAGAGTGCAGAAATAATACGCATGTTTAATAGTGAATGTAATGATATAGCTGAGAATGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0320M09-0CleD/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E214292" ref_strand="+" ref_description="SGN-E214292 [cLEC-77-F6]">
      <seq>tgaggcacacttttgtatttcaacagccttctttcaagcaaagtatacgaatggctcgttccgctctggatgagatgtcagcaacaggtgcttttgagagaactgcttcaaccttccgtaatatagtctcaagggaacccggctcagtttttccagtcgaatctgggaggtaccacctctacatatcatatgcttgcccatgggcatcaaggtgcctggcttacttgaagattaaaggccttgatcaagccattgatttcacatctgttaaacctgtttgggagaggacgaaggacagcgatgagcacacgggatgggtttttgcttcatcaagcaccgaggaagcaggagctgatcttgatcctcttaatggagccaaaagcatacgggagctgtatgagcttgcaagtacaaactattctgggaaatacactgttccggttctttgggataagaaactgaagacaatcgtgaacaacgagagtgcagaaataatacgcatgtttaatagtgaatttaatgatatagctg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0320M09-0CleD/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0320M09.4" temp_strand="+" temp_description="C02HBa0320M09.4  AC215438.3 htgs_phase:3 submitted_to_sgn_as:C02HBa0320M09 sequenced_by:kribb upload_account_name:korea">
        <position start="86764" stop="89122"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="87064" g_stop="87101" g_length="38"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="38" r_length="38" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="87102" i_stop="88156" i_length="1055">
            <donor d_prob="0.996" d_score="0.00"/>
            <acceptor a_prob="0.816" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="88157" g_stop="88381" g_length="225"/>
          <reference_exon_boundary r_type="cDNA" r_start="39" r_stop="263" r_length="225" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="88382" i_stop="88462" i_length="81">
            <donor d_prob="0.966" d_score="1.00"/>
            <acceptor a_prob="0.988" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="88463" g_stop="88639" g_length="177"/>
          <reference_exon_boundary r_type="cDNA" r_start="264" r_stop="440" r_length="177" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="88640" i_stop="88731" i_length="92">
            <donor d_prob="0.896" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="88732" g_stop="88822" g_length="91"/>
          <reference_exon_boundary r_type="cDNA" r_start="441" r_stop="531" r_length="91" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0320M09.4" gen_strand="+" ref_id="SGN-E214292" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>531</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0320M09.4" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E214292" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="87064" e_stop="87101"/>
          <exon e_start="88157" e_stop="88381"/>
          <exon e_start="88463" e_stop="88639"/>
          <exon e_start="88732" e_stop="88822"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGAGGCACACTTTTGTATTTCAACAGCCTTCTTTCAAGGTAAACAACTTTAATTTCAGTTCTTAATCATTTTTCCAGGTACCCCATATGGGGTAGATGTGTTTATATGCACTTCTATATGTTGATTGGAGTTATGGGGGAAGCGGGTGTTTCTGCTTTTCTTCTCTGTGTTTGAGGGTTTTGTGATTTTTGAAACTTTTTATACAAGATGGCTAATTTATGATCTTAAAGGAATTCTTGAGTTTGTGGTTTACTAGTCTAAGATATGTTTGTATGGTGATCAAGAAAATGGAAAAAAGAAGTGATTTTTATGTTCTTTTGTATAACTTGTGATTGTGTTACTTTGAAAAAAAATGTGTGTAGGGGAAGGAGAAATGGGGAGTCGAACTCTCGAGGAGGAAGTTGAGGTAGTCAATCAACTGAGCTACTAAGATTTCCCATTTTGGTTCAGAGCTTTAGCTGATTGTTTATTTTGTTAAGAGTCTGAAAGGGTTTACTGTTTTTGAGTTTCTTAGGTTGATTGCTTAGATGGTCACTCAATTACTAATAGTTATAGTTATTATCTAAGAAAGTGACTTTCTGCGATAACAATTATTAGTTGAGTGACCATTTGAGAAATCAATTCGAATTTCTTGGTGCCCCTTTTCAGCAATTTGAGCAGCGTCTCATAAAGAGAAAAGGATAAGAAAGGGGATGGGATTCTGAATTTATTGTGTTTTGCGAGATTGTAAGTTCATGTGATGAACTATGAATTGTGTCTGTGCAAGAATGAGAAGGAATTTCACTAAACGGAAAAGATAAATACAACAAGCAATGCTGTAACTAATGTACCGAAGCGGAGACTGTATTGTCTATTTTCTGCAGAGTAGGTATATTTCTCTGTACAAACAGGAACATGGAGCATATGTTAGTGTTATTCAATTGGATATATTGACTGCGTCATTTACATTTTATCTGAATATTTTAGTGAACGTATCATGTGCTTTGTTGAAAAAATGTCATCTTCTTTAGATGCAGTATCATGTTCATTTAGGCTTCTGGTAAAAGAGGATGAAAGGTTATACTAACATTCTGCACTTACTGGTTGTTTCCAGCAAAGTATACGAATGGCTCGTTCCGCTCTGGATGAGATGTCAGCAACAGGTGCTTTTGAGAGAACTGCTTCAACCTTCCGTAATATAGTCTCAAGGGAACCCGGCTCAGTTTTTCCAGTCGAATCTGGGAGGTACCACCTCTACATATCATATGCTTGCCCATGGGCATCAAGGTGCCTGGCTTACTTGAAGATTAAAGGCCTTGATCAAGCCATTGATTTCACAGTAAGAAGTTGAATGAACTACTTGTATCTTGGACTCAAGTTTGGACTCCTAACAATCTGTTTCCGTTGTGTTGGCTTGCAGTCTGTTAAACCTGTTTGGGAGAGGACGAAGGACAGCGATGAGCACACGGGATGGGTTTTTGCTTCATCAAGCACCGAGGAAGCAGGAGCTGATCTTGATCCTCTTAATGGAGCCAAAAGCATACGGGAGCTGTATGAGCTTGCAAGTACAAACTATTCTGGGAAATACACTGTTCCGGTATTGTTTATCAATAAATAGAATCTCTAATAACATTTATTTGCTTGGTCTGTTCATATTTTTATTGATTGATGGTCTGGTTTTTGTTATAGGTTCTTTGGGATAAGAAACTGAAGACAATCGTGAACAACGAGAGTGCAGAAATAATACGCATGTTTAATAGTGAATTTAATGATATAGCTG</genome_strand>
        <mrna_strand>TGAGGCACACTTTTGTATTTCAACAGCCTTCTTTCAAG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAAAGTATACGAATGGCTCGTTCCGCTCTGGATGAGATGTCAGCAACAGGTGCTTTTGAGAGAACTGCTTCAACCTTCCGTAATATAGTCTCAAGGGAACCCGGCTCAGTTTTTCCAGTCGAATCTGGGAGGTACCACCTCTACATATCATATGCTTGCCCATGGGCATCAAGGTGCCTGGCTTACTTGAAGATTAAAGGCCTTGATCAAGCCATTGATTTCACA.................................................................................TCTGTTAAACCTGTTTGGGAGAGGACGAAGGACAGCGATGAGCACACGGGATGGGTTTTTGCTTCATCAAGCACCGAGGAAGCAGGAGCTGATCTTGATCCTCTTAATGGAGCCAAAAGCATACGGGAGCTGTATGAGCTTGCAAGTACAAACTATTCTGGGAAATACACTGTTCCG............................................................................................GTTCTTTGGGATAAGAAACTGAAGACAATCGTGAACAACGAGAGTGCAGAAATAATACGCATGTTTAATAGTGAATTTAATGATATAGCTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0320M09-0CleD/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E311633" ref_strand="+" ref_description="SGN-E311633 [cLEZ-9-G16]">
      <seq>acttttgtatttcaacagccttctttcaagcaaagtatacgaatggctcgttccgctctggatgagatgtcagcaacaggtgcttttgagagaactgcttcaaccttccgtaatatagtctcaagggaacccggctcagtttttccagtcgaatctgggaggtaccacctctacatatcatatgcttgcccatgggcatcaaggtgcctggcttacttgaagattaaaggccttgatcaagccattgatttcacatctgttaaacctgtttgggagaggacgaaggacagcgatgagcacacgggatgggtttttgcttcatcaagcaccgaggaagcaggagctgatcttgatcctcttaatggagccaaaagcatacgggagctgtatgagcttgcaagtacaaactattctgggaaatacactgttccggttctttgggataagaaactgaagacaatcgtgaacaacgagagtgcagaaataatacgcatgtttaatagtgaatttaatgatatagctgagaatgcagctttggacctttatcctcctcatttgcaatccctaatcaatgaagcaaatgaat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0320M09-0CleD/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0320M09.4" temp_strand="+" temp_description="C02HBa0320M09.4  AC215438.3 htgs_phase:3 submitted_to_sgn_as:C02HBa0320M09 sequenced_by:kribb upload_account_name:korea">
        <position start="86772" stop="89185"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="87072" g_stop="87101" g_length="30"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="30" r_length="30" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="87102" i_stop="88156" i_length="1055">
            <donor d_prob="0.996" d_score="0.00"/>
            <acceptor a_prob="0.816" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="88157" g_stop="88381" g_length="225"/>
          <reference_exon_boundary r_type="cDNA" r_start="31" r_stop="255" r_length="225" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="88382" i_stop="88462" i_length="81">
            <donor d_prob="0.966" d_score="1.00"/>
            <acceptor a_prob="0.988" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="88463" g_stop="88639" g_length="177"/>
          <reference_exon_boundary r_type="cDNA" r_start="256" r_stop="432" r_length="177" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="88640" i_stop="88731" i_length="92">
            <donor d_prob="0.896" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="88732" g_stop="88885" g_length="154"/>
          <reference_exon_boundary r_type="cDNA" r_start="433" r_stop="586" r_length="154" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0320M09.4" gen_strand="+" ref_id="SGN-E311633" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>586</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0320M09.4" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E311633" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="87072" e_stop="87101"/>
          <exon e_start="88157" e_stop="88381"/>
          <exon e_start="88463" e_stop="88639"/>
          <exon e_start="88732" e_stop="88885"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACTTTTGTATTTCAACAGCCTTCTTTCAAGGTAAACAACTTTAATTTCAGTTCTTAATCATTTTTCCAGGTACCCCATATGGGGTAGATGTGTTTATATGCACTTCTATATGTTGATTGGAGTTATGGGGGAAGCGGGTGTTTCTGCTTTTCTTCTCTGTGTTTGAGGGTTTTGTGATTTTTGAAACTTTTTATACAAGATGGCTAATTTATGATCTTAAAGGAATTCTTGAGTTTGTGGTTTACTAGTCTAAGATATGTTTGTATGGTGATCAAGAAAATGGAAAAAAGAAGTGATTTTTATGTTCTTTTGTATAACTTGTGATTGTGTTACTTTGAAAAAAAATGTGTGTAGGGGAAGGAGAAATGGGGAGTCGAACTCTCGAGGAGGAAGTTGAGGTAGTCAATCAACTGAGCTACTAAGATTTCCCATTTTGGTTCAGAGCTTTAGCTGATTGTTTATTTTGTTAAGAGTCTGAAAGGGTTTACTGTTTTTGAGTTTCTTAGGTTGATTGCTTAGATGGTCACTCAATTACTAATAGTTATAGTTATTATCTAAGAAAGTGACTTTCTGCGATAACAATTATTAGTTGAGTGACCATTTGAGAAATCAATTCGAATTTCTTGGTGCCCCTTTTCAGCAATTTGAGCAGCGTCTCATAAAGAGAAAAGGATAAGAAAGGGGATGGGATTCTGAATTTATTGTGTTTTGCGAGATTGTAAGTTCATGTGATGAACTATGAATTGTGTCTGTGCAAGAATGAGAAGGAATTTCACTAAACGGAAAAGATAAATACAACAAGCAATGCTGTAACTAATGTACCGAAGCGGAGACTGTATTGTCTATTTTCTGCAGAGTAGGTATATTTCTCTGTACAAACAGGAACATGGAGCATATGTTAGTGTTATTCAATTGGATATATTGACTGCGTCATTTACATTTTATCTGAATATTTTAGTGAACGTATCATGTGCTTTGTTGAAAAAATGTCATCTTCTTTAGATGCAGTATCATGTTCATTTAGGCTTCTGGTAAAAGAGGATGAAAGGTTATACTAACATTCTGCACTTACTGGTTGTTTCCAGCAAAGTATACGAATGGCTCGTTCCGCTCTGGATGAGATGTCAGCAACAGGTGCTTTTGAGAGAACTGCTTCAACCTTCCGTAATATAGTCTCAAGGGAACCCGGCTCAGTTTTTCCAGTCGAATCTGGGAGGTACCACCTCTACATATCATATGCTTGCCCATGGGCATCAAGGTGCCTGGCTTACTTGAAGATTAAAGGCCTTGATCAAGCCATTGATTTCACAGTAAGAAGTTGAATGAACTACTTGTATCTTGGACTCAAGTTTGGACTCCTAACAATCTGTTTCCGTTGTGTTGGCTTGCAGTCTGTTAAACCTGTTTGGGAGAGGACGAAGGACAGCGATGAGCACACGGGATGGGTTTTTGCTTCATCAAGCACCGAGGAAGCAGGAGCTGATCTTGATCCTCTTAATGGAGCCAAAAGCATACGGGAGCTGTATGAGCTTGCAAGTACAAACTATTCTGGGAAATACACTGTTCCGGTATTGTTTATCAATAAATAGAATCTCTAATAACATTTATTTGCTTGGTCTGTTCATATTTTTATTGATTGATGGTCTGGTTTTTGTTATAGGTTCTTTGGGATAAGAAACTGAAGACAATCGTGAACAACGAGAGTGCAGAAATAATACGCATGTTTAATAGTGAATTTAATGATATAGCTGAGAATGCAGCTTTGGACCTTTATCCTCCTCATTTGCAATCCCTAATCAATGAAGCAAATGAAT</genome_strand>
        <mrna_strand>ACTTTTGTATTTCAACAGCCTTCTTTCAAG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAAAGTATACGAATGGCTCGTTCCGCTCTGGATGAGATGTCAGCAACAGGTGCTTTTGAGAGAACTGCTTCAACCTTCCGTAATATAGTCTCAAGGGAACCCGGCTCAGTTTTTCCAGTCGAATCTGGGAGGTACCACCTCTACATATCATATGCTTGCCCATGGGCATCAAGGTGCCTGGCTTACTTGAAGATTAAAGGCCTTGATCAAGCCATTGATTTCACA.................................................................................TCTGTTAAACCTGTTTGGGAGAGGACGAAGGACAGCGATGAGCACACGGGATGGGTTTTTGCTTCATCAAGCACCGAGGAAGCAGGAGCTGATCTTGATCCTCTTAATGGAGCCAAAAGCATACGGGAGCTGTATGAGCTTGCAAGTACAAACTATTCTGGGAAATACACTGTTCCG............................................................................................GTTCTTTGGGATAAGAAACTGAAGACAATCGTGAACAACGAGAGTGCAGAAATAATACGCATGTTTAATAGTGAATTTAATGATATAGCTGAGAATGCAGCTTTGGACCTTTATCCTCCTCATTTGCAATCCCTAATCAATGAAGCAAATGAAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0320M09-0CleD/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E311726" ref_strand="+" ref_description="SGN-E311726 [cLEZ-9-E17]">
      <seq>acttttgtatttcaacagccttctttcaagcaaagtatacgaatggctcgttccgctctggatgagatgtcagcaacaggtgcttttgagagaactgcttcaaccttccgtaatatagtctcaagggaacccggctcagtttttccagtcgaatctgggaggtaccacctctacatatcatatgcttgcccatgggcatcaaggtgcctggcttacttgaagattaaaggccttgatcaagccattgatttcacatctgttaaacctgtttgggagaggacgaaggacagcgatgagcacacgggatgggtttttgcttcatcaagcaccgaggaagcaggagctgatcttgatcctcttaatggagccaaaagcatacgggagctgtatgagcttgcaagtacaaactattctgggaaatacactgttccggttctttgggataagaaactgaagacaatcgtgaacaacgagagtgcagaaataatacgcatgtttaatagtgaatttaatgatatagctgagaatgcaactttggacc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0320M09-0CleD/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0320M09.4" temp_strand="+" temp_description="C02HBa0320M09.4  AC215438.3 htgs_phase:3 submitted_to_sgn_as:C02HBa0320M09 sequenced_by:kribb upload_account_name:korea">
        <position start="86772" stop="89140"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="87072" g_stop="87101" g_length="30"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="30" r_length="30" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="87102" i_stop="88156" i_length="1055">
            <donor d_prob="0.996" d_score="0.00"/>
            <acceptor a_prob="0.816" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="88157" g_stop="88381" g_length="225"/>
          <reference_exon_boundary r_type="cDNA" r_start="31" r_stop="255" r_length="225" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="88382" i_stop="88462" i_length="81">
            <donor d_prob="0.966" d_score="1.00"/>
            <acceptor a_prob="0.988" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="88463" g_stop="88639" g_length="177"/>
          <reference_exon_boundary r_type="cDNA" r_start="256" r_stop="432" r_length="177" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="88640" i_stop="88731" i_length="92">
            <donor d_prob="0.896" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="88732" g_stop="88840" g_length="109"/>
          <reference_exon_boundary r_type="cDNA" r_start="433" r_stop="541" r_length="109" r_score="0.991"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0320M09.4" gen_strand="+" ref_id="SGN-E311726" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>541</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0320M09.4" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E311726" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="87072" e_stop="87101"/>
          <exon e_start="88157" e_stop="88381"/>
          <exon e_start="88463" e_stop="88639"/>
          <exon e_start="88732" e_stop="88840"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACTTTTGTATTTCAACAGCCTTCTTTCAAGGTAAACAACTTTAATTTCAGTTCTTAATCATTTTTCCAGGTACCCCATATGGGGTAGATGTGTTTATATGCACTTCTATATGTTGATTGGAGTTATGGGGGAAGCGGGTGTTTCTGCTTTTCTTCTCTGTGTTTGAGGGTTTTGTGATTTTTGAAACTTTTTATACAAGATGGCTAATTTATGATCTTAAAGGAATTCTTGAGTTTGTGGTTTACTAGTCTAAGATATGTTTGTATGGTGATCAAGAAAATGGAAAAAAGAAGTGATTTTTATGTTCTTTTGTATAACTTGTGATTGTGTTACTTTGAAAAAAAATGTGTGTAGGGGAAGGAGAAATGGGGAGTCGAACTCTCGAGGAGGAAGTTGAGGTAGTCAATCAACTGAGCTACTAAGATTTCCCATTTTGGTTCAGAGCTTTAGCTGATTGTTTATTTTGTTAAGAGTCTGAAAGGGTTTACTGTTTTTGAGTTTCTTAGGTTGATTGCTTAGATGGTCACTCAATTACTAATAGTTATAGTTATTATCTAAGAAAGTGACTTTCTGCGATAACAATTATTAGTTGAGTGACCATTTGAGAAATCAATTCGAATTTCTTGGTGCCCCTTTTCAGCAATTTGAGCAGCGTCTCATAAAGAGAAAAGGATAAGAAAGGGGATGGGATTCTGAATTTATTGTGTTTTGCGAGATTGTAAGTTCATGTGATGAACTATGAATTGTGTCTGTGCAAGAATGAGAAGGAATTTCACTAAACGGAAAAGATAAATACAACAAGCAATGCTGTAACTAATGTACCGAAGCGGAGACTGTATTGTCTATTTTCTGCAGAGTAGGTATATTTCTCTGTACAAACAGGAACATGGAGCATATGTTAGTGTTATTCAATTGGATATATTGACTGCGTCATTTACATTTTATCTGAATATTTTAGTGAACGTATCATGTGCTTTGTTGAAAAAATGTCATCTTCTTTAGATGCAGTATCATGTTCATTTAGGCTTCTGGTAAAAGAGGATGAAAGGTTATACTAACATTCTGCACTTACTGGTTGTTTCCAGCAAAGTATACGAATGGCTCGTTCCGCTCTGGATGAGATGTCAGCAACAGGTGCTTTTGAGAGAACTGCTTCAACCTTCCGTAATATAGTCTCAAGGGAACCCGGCTCAGTTTTTCCAGTCGAATCTGGGAGGTACCACCTCTACATATCATATGCTTGCCCATGGGCATCAAGGTGCCTGGCTTACTTGAAGATTAAAGGCCTTGATCAAGCCATTGATTTCACAGTAAGAAGTTGAATGAACTACTTGTATCTTGGACTCAAGTTTGGACTCCTAACAATCTGTTTCCGTTGTGTTGGCTTGCAGTCTGTTAAACCTGTTTGGGAGAGGACGAAGGACAGCGATGAGCACACGGGATGGGTTTTTGCTTCATCAAGCACCGAGGAAGCAGGAGCTGATCTTGATCCTCTTAATGGAGCCAAAAGCATACGGGAGCTGTATGAGCTTGCAAGTACAAACTATTCTGGGAAATACACTGTTCCGGTATTGTTTATCAATAAATAGAATCTCTAATAACATTTATTTGCTTGGTCTGTTCATATTTTTATTGATTGATGGTCTGGTTTTTGTTATAGGTTCTTTGGGATAAGAAACTGAAGACAATCGTGAACAACGAGAGTGCAGAAATAATACGCATGTTTAATAGTGAATTTAATGATATAGCTGAGAATGCAGCTTTGGACC</genome_strand>
        <mrna_strand>ACTTTTGTATTTCAACAGCCTTCTTTCAAG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAAAGTATACGAATGGCTCGTTCCGCTCTGGATGAGATGTCAGCAACAGGTGCTTTTGAGAGAACTGCTTCAACCTTCCGTAATATAGTCTCAAGGGAACCCGGCTCAGTTTTTCCAGTCGAATCTGGGAGGTACCACCTCTACATATCATATGCTTGCCCATGGGCATCAAGGTGCCTGGCTTACTTGAAGATTAAAGGCCTTGATCAAGCCATTGATTTCACA.................................................................................TCTGTTAAACCTGTTTGGGAGAGGACGAAGGACAGCGATGAGCACACGGGATGGGTTTTTGCTTCATCAAGCACCGAGGAAGCAGGAGCTGATCTTGATCCTCTTAATGGAGCCAAAAGCATACGGGAGCTGTATGAGCTTGCAAGTACAAACTATTCTGGGAAATACACTGTTCCG............................................................................................GTTCTTTGGGATAAGAAACTGAAGACAATCGTGAACAACGAGAGTGCAGAAATAATACGCATGTTTAATAGTGAATTTAATGATATAGCTGAGAATGCAACTTTGGACC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0320M09-0CleD/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E313250" ref_strand="+" ref_description="SGN-E313250 [cTOA-18-K16]">
      <seq>ttttgtatttcaacagccttctttcaagcaaagtatacgaatggctcgttccgctctggatgagatgtcagcaacaggtgcttttgagagaactgcttcaaccttccgtaatatagtctcaagggaacccggctcagtttttccagtcgaatctgggaggtaccacctctacatatcatatgcttgcccatgggcatcaaggtgcctggcttacttgaagattaaaggccttgatcaagccattgatttcacatctgttaaacctgtttgggagaggacgaaggacagcgatgagcacacgggatgggtttttgcttcatcaagcaccgaggaagcaggagctgatcttgatcctcttaatggagccaaaagcatacgggagctgtatgagcttgcaagtacaaactattctgggaaatacactgttccggttctttgggataagaaactgaagacaatcgtgaacaacgagagtgcagaaataatacgcatgtttaatagtgaatttaatgatatagctgagaatgcagctttggacctttatcctcctcatttgcaatccctaatcaatgaagcaaatgaatggatatatgatgg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0320M09-0CleD/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0320M09.4" temp_strand="+" temp_description="C02HBa0320M09.4  AC215438.3 htgs_phase:3 submitted_to_sgn_as:C02HBa0320M09 sequenced_by:kribb upload_account_name:korea">
        <position start="86774" stop="89198"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="87074" g_stop="87101" g_length="28"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="28" r_length="28" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="87102" i_stop="88156" i_length="1055">
            <donor d_prob="0.996" d_score="0.00"/>
            <acceptor a_prob="0.816" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="88157" g_stop="88381" g_length="225"/>
          <reference_exon_boundary r_type="cDNA" r_start="29" r_stop="253" r_length="225" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="88382" i_stop="88462" i_length="81">
            <donor d_prob="0.966" d_score="1.00"/>
            <acceptor a_prob="0.988" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="88463" g_stop="88639" g_length="177"/>
          <reference_exon_boundary r_type="cDNA" r_start="254" r_stop="430" r_length="177" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="88640" i_stop="88731" i_length="92">
            <donor d_prob="0.896" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="88732" g_stop="88898" g_length="167"/>
          <reference_exon_boundary r_type="cDNA" r_start="431" r_stop="597" r_length="167" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0320M09.4" gen_strand="+" ref_id="SGN-E313250" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>597</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0320M09.4" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E313250" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="87074" e_stop="87101"/>
          <exon e_start="88157" e_stop="88381"/>
          <exon e_start="88463" e_stop="88639"/>
          <exon e_start="88732" e_stop="88898"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTTGTATTTCAACAGCCTTCTTTCAAGGTAAACAACTTTAATTTCAGTTCTTAATCATTTTTCCAGGTACCCCATATGGGGTAGATGTGTTTATATGCACTTCTATATGTTGATTGGAGTTATGGGGGAAGCGGGTGTTTCTGCTTTTCTTCTCTGTGTTTGAGGGTTTTGTGATTTTTGAAACTTTTTATACAAGATGGCTAATTTATGATCTTAAAGGAATTCTTGAGTTTGTGGTTTACTAGTCTAAGATATGTTTGTATGGTGATCAAGAAAATGGAAAAAAGAAGTGATTTTTATGTTCTTTTGTATAACTTGTGATTGTGTTACTTTGAAAAAAAATGTGTGTAGGGGAAGGAGAAATGGGGAGTCGAACTCTCGAGGAGGAAGTTGAGGTAGTCAATCAACTGAGCTACTAAGATTTCCCATTTTGGTTCAGAGCTTTAGCTGATTGTTTATTTTGTTAAGAGTCTGAAAGGGTTTACTGTTTTTGAGTTTCTTAGGTTGATTGCTTAGATGGTCACTCAATTACTAATAGTTATAGTTATTATCTAAGAAAGTGACTTTCTGCGATAACAATTATTAGTTGAGTGACCATTTGAGAAATCAATTCGAATTTCTTGGTGCCCCTTTTCAGCAATTTGAGCAGCGTCTCATAAAGAGAAAAGGATAAGAAAGGGGATGGGATTCTGAATTTATTGTGTTTTGCGAGATTGTAAGTTCATGTGATGAACTATGAATTGTGTCTGTGCAAGAATGAGAAGGAATTTCACTAAACGGAAAAGATAAATACAACAAGCAATGCTGTAACTAATGTACCGAAGCGGAGACTGTATTGTCTATTTTCTGCAGAGTAGGTATATTTCTCTGTACAAACAGGAACATGGAGCATATGTTAGTGTTATTCAATTGGATATATTGACTGCGTCATTTACATTTTATCTGAATATTTTAGTGAACGTATCATGTGCTTTGTTGAAAAAATGTCATCTTCTTTAGATGCAGTATCATGTTCATTTAGGCTTCTGGTAAAAGAGGATGAAAGGTTATACTAACATTCTGCACTTACTGGTTGTTTCCAGCAAAGTATACGAATGGCTCGTTCCGCTCTGGATGAGATGTCAGCAACAGGTGCTTTTGAGAGAACTGCTTCAACCTTCCGTAATATAGTCTCAAGGGAACCCGGCTCAGTTTTTCCAGTCGAATCTGGGAGGTACCACCTCTACATATCATATGCTTGCCCATGGGCATCAAGGTGCCTGGCTTACTTGAAGATTAAAGGCCTTGATCAAGCCATTGATTTCACAGTAAGAAGTTGAATGAACTACTTGTATCTTGGACTCAAGTTTGGACTCCTAACAATCTGTTTCCGTTGTGTTGGCTTGCAGTCTGTTAAACCTGTTTGGGAGAGGACGAAGGACAGCGATGAGCACACGGGATGGGTTTTTGCTTCATCAAGCACCGAGGAAGCAGGAGCTGATCTTGATCCTCTTAATGGAGCCAAAAGCATACGGGAGCTGTATGAGCTTGCAAGTACAAACTATTCTGGGAAATACACTGTTCCGGTATTGTTTATCAATAAATAGAATCTCTAATAACATTTATTTGCTTGGTCTGTTCATATTTTTATTGATTGATGGTCTGGTTTTTGTTATAGGTTCTTTGGGATAAGAAACTGAAGACAATCGTGAACAACGAGAGTGCAGAAATAATACGCATGTTTAATAGTGAATTTAATGATATAGCTGAGAATGCAGCTTTGGACCTTTATCCTCCTCATTTGCAATCCCTAATCAATGAAGCAAATGAATGGATATATGATGG</genome_strand>
        <mrna_strand>TTTTGTATTTCAACAGCCTTCTTTCAAG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAAAGTATACGAATGGCTCGTTCCGCTCTGGATGAGATGTCAGCAACAGGTGCTTTTGAGAGAACTGCTTCAACCTTCCGTAATATAGTCTCAAGGGAACCCGGCTCAGTTTTTCCAGTCGAATCTGGGAGGTACCACCTCTACATATCATATGCTTGCCCATGGGCATCAAGGTGCCTGGCTTACTTGAAGATTAAAGGCCTTGATCAAGCCATTGATTTCACA.................................................................................TCTGTTAAACCTGTTTGGGAGAGGACGAAGGACAGCGATGAGCACACGGGATGGGTTTTTGCTTCATCAAGCACCGAGGAAGCAGGAGCTGATCTTGATCCTCTTAATGGAGCCAAAAGCATACGGGAGCTGTATGAGCTTGCAAGTACAAACTATTCTGGGAAATACACTGTTCCG............................................................................................GTTCTTTGGGATAAGAAACTGAAGACAATCGTGAACAACGAGAGTGCAGAAATAATACGCATGTTTAATAGTGAATTTAATGATATAGCTGAGAATGCAGCTTTGGACCTTTATCCTCCTCATTTGCAATCCCTAATCAATGAAGCAAATGAATGGATATATGATGG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0320M09-0CleD/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E301798" ref_strand="+" ref_description="SGN-E301798 [cLEW-25-B9]">
      <seq>ttttgtatttcaacagccttttttcaagcaaagtatacgaatggctcgtggggctctggatgaaatgtcagcaacaggtgcttttgagagaactgcttcaaccttccgtaatatagtctcaagggaacccggctcagtttttccagtcgaatctgggaggtcccacctctacatatcatatgcttgcccatgggcatcaaggtgcctggcttacttgaagattaaaggccttgatcaagccattgatttcacatctgttaaacctgtttgggagaggacgaaggacagcgatgagcacacgggatgggtttttgcttcatcaagcaccgaggaagcaggagctgatcttgatcctcttaatggagccaaaagcatacaggagctgtatgagcttgcaagtacaaactattctgggaaatacactgttccggttctttgggataagaaactgaagacaatcgtgaacaacgagagtgcagaaataatacgcatgtttaatagtgaatttaatgatatagctgagaatgca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0320M09-0CleD/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0320M09.4" temp_strand="+" temp_description="C02HBa0320M09.4  AC215438.3 htgs_phase:3 submitted_to_sgn_as:C02HBa0320M09 sequenced_by:kribb upload_account_name:korea">
        <position start="86774" stop="89130"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="87074" g_stop="87101" g_length="28"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="28" r_length="28" r_score="0.964"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="87102" i_stop="88156" i_length="1055">
            <donor d_prob="0.996" d_score="0.00"/>
            <acceptor a_prob="0.816" a_score="0.92"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="88157" g_stop="88381" g_length="225"/>
          <reference_exon_boundary r_type="cDNA" r_start="29" r_stop="253" r_length="225" r_score="0.978"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="88382" i_stop="88462" i_length="81">
            <donor d_prob="0.966" d_score="1.00"/>
            <acceptor a_prob="0.988" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="88463" g_stop="88639" g_length="177"/>
          <reference_exon_boundary r_type="cDNA" r_start="254" r_stop="430" r_length="177" r_score="0.994"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="88640" i_stop="88731" i_length="92">
            <donor d_prob="0.896" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="88732" g_stop="88830" g_length="99"/>
          <reference_exon_boundary r_type="cDNA" r_start="431" r_stop="529" r_length="99" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0320M09.4" gen_strand="+" ref_id="SGN-E301798" ref_strand="+">
        <total_alignment_score>0.988</total_alignment_score>
        <cumulative_length_of_scored_exons>529</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0320M09.4" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E301798" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="87074" e_stop="87101"/>
          <exon e_start="88157" e_stop="88381"/>
          <exon e_start="88463" e_stop="88639"/>
          <exon e_start="88732" e_stop="88830"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTTGTATTTCAACAGCCTTCTTTCAAGGTAAACAACTTTAATTTCAGTTCTTAATCATTTTTCCAGGTACCCCATATGGGGTAGATGTGTTTATATGCACTTCTATATGTTGATTGGAGTTATGGGGGAAGCGGGTGTTTCTGCTTTTCTTCTCTGTGTTTGAGGGTTTTGTGATTTTTGAAACTTTTTATACAAGATGGCTAATTTATGATCTTAAAGGAATTCTTGAGTTTGTGGTTTACTAGTCTAAGATATGTTTGTATGGTGATCAAGAAAATGGAAAAAAGAAGTGATTTTTATGTTCTTTTGTATAACTTGTGATTGTGTTACTTTGAAAAAAAATGTGTGTAGGGGAAGGAGAAATGGGGAGTCGAACTCTCGAGGAGGAAGTTGAGGTAGTCAATCAACTGAGCTACTAAGATTTCCCATTTTGGTTCAGAGCTTTAGCTGATTGTTTATTTTGTTAAGAGTCTGAAAGGGTTTACTGTTTTTGAGTTTCTTAGGTTGATTGCTTAGATGGTCACTCAATTACTAATAGTTATAGTTATTATCTAAGAAAGTGACTTTCTGCGATAACAATTATTAGTTGAGTGACCATTTGAGAAATCAATTCGAATTTCTTGGTGCCCCTTTTCAGCAATTTGAGCAGCGTCTCATAAAGAGAAAAGGATAAGAAAGGGGATGGGATTCTGAATTTATTGTGTTTTGCGAGATTGTAAGTTCATGTGATGAACTATGAATTGTGTCTGTGCAAGAATGAGAAGGAATTTCACTAAACGGAAAAGATAAATACAACAAGCAATGCTGTAACTAATGTACCGAAGCGGAGACTGTATTGTCTATTTTCTGCAGAGTAGGTATATTTCTCTGTACAAACAGGAACATGGAGCATATGTTAGTGTTATTCAATTGGATATATTGACTGCGTCATTTACATTTTATCTGAATATTTTAGTGAACGTATCATGTGCTTTGTTGAAAAAATGTCATCTTCTTTAGATGCAGTATCATGTTCATTTAGGCTTCTGGTAAAAGAGGATGAAAGGTTATACTAACATTCTGCACTTACTGGTTGTTTCCAGCAAAGTATACGAATGGCTCGTTCCGCTCTGGATGAGATGTCAGCAACAGGTGCTTTTGAGAGAACTGCTTCAACCTTCCGTAATATAGTCTCAAGGGAACCCGGCTCAGTTTTTCCAGTCGAATCTGGGAGGTACCACCTCTACATATCATATGCTTGCCCATGGGCATCAAGGTGCCTGGCTTACTTGAAGATTAAAGGCCTTGATCAAGCCATTGATTTCACAGTAAGAAGTTGAATGAACTACTTGTATCTTGGACTCAAGTTTGGACTCCTAACAATCTGTTTCCGTTGTGTTGGCTTGCAGTCTGTTAAACCTGTTTGGGAGAGGACGAAGGACAGCGATGAGCACACGGGATGGGTTTTTGCTTCATCAAGCACCGAGGAAGCAGGAGCTGATCTTGATCCTCTTAATGGAGCCAAAAGCATACGGGAGCTGTATGAGCTTGCAAGTACAAACTATTCTGGGAAATACACTGTTCCGGTATTGTTTATCAATAAATAGAATCTCTAATAACATTTATTTGCTTGGTCTGTTCATATTTTTATTGATTGATGGTCTGGTTTTTGTTATAGGTTCTTTGGGATAAGAAACTGAAGACAATCGTGAACAACGAGAGTGCAGAAATAATACGCATGTTTAATAGTGAATTTAATGATATAGCTGAGAATGCA</genome_strand>
        <mrna_strand>TTTTGTATTTCAACAGCCTTTTTTCAAG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAAAGTATACGAATGGCTCGTGGGGCTCTGGATGAAATGTCAGCAACAGGTGCTTTTGAGAGAACTGCTTCAACCTTCCGTAATATAGTCTCAAGGGAACCCGGCTCAGTTTTTCCAGTCGAATCTGGGAGGTCCCACCTCTACATATCATATGCTTGCCCATGGGCATCAAGGTGCCTGGCTTACTTGAAGATTAAAGGCCTTGATCAAGCCATTGATTTCACA.................................................................................TCTGTTAAACCTGTTTGGGAGAGGACGAAGGACAGCGATGAGCACACGGGATGGGTTTTTGCTTCATCAAGCACCGAGGAAGCAGGAGCTGATCTTGATCCTCTTAATGGAGCCAAAAGCATACAGGAGCTGTATGAGCTTGCAAGTACAAACTATTCTGGGAAATACACTGTTCCG............................................................................................GTTCTTTGGGATAAGAAACTGAAGACAATCGTGAACAACGAGAGTGCAGAAATAATACGCATGTTTAATAGTGAATTTAATGATATAGCTGAGAATGCA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0320M09-0CleD/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E709209" ref_strand="+" ref_description="SGN-E709209 [FA51AB02]">
      <seq>cgctcagtttttccagtcgaatctgggaggtaccacctctacatatcatatgcttgcccatgggcatcaaggtgcctggcttacttgaagattaaaggccttgatcaagccattgatttcacatctgttaaacctgtttgggagaggacgaaggacagcgatgagcacacgggatgggtttttgcttcatcaagcaccgaggaagcaggagctgatcttgatcctcttaatggagccaaaagcatacgggagctgtatgagcttgcaagtacaaactattctgggaaatacactgttccggttctttgggataagaaactgaagacaatcgtgaacaacgagagtgcagaaataatacgcatgtttaatagtgaatttaatgatatagctgagaatgcagctttggacctttatcctcctcatttgcaatccctaatcaatgaagcaaatgaatggatatatgatggaataaacaacggagtgtatcaatgtggttttgcaaagaagcaagagccttatgatgaggctgtgcaaaaagtatacaaagctttggacaaatgtgaggagatactgagcaagcagagatacatatgtggagatcaagtgactgaagcagatattcgcttgtttgtcaccctgattaggtttgatgaggtgtatgctgtctacttcaagtgcaataagaagctacttcgtgaatatccaaatctgtttaattacaccaaagatattttccaaatacccggcatgagcagtacggtcaacatggaacacatcaaaaagcattactataggagccatcctagcatcaatcctttcggaatcattcc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0320M09-0CleD/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0320M09.4" temp_strand="+" temp_description="C02HBa0320M09.4  AC215438.3 htgs_phase:3 submitted_to_sgn_as:C02HBa0320M09 sequenced_by:kribb upload_account_name:korea">
        <position start="87960" stop="92334"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="88259" g_stop="88381" g_length="123"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="123" r_length="123" r_score="0.992"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="88382" i_stop="88462" i_length="81">
            <donor d_prob="0.966" d_score="1.00"/>
            <acceptor a_prob="0.988" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="88463" g_stop="88639" g_length="177"/>
          <reference_exon_boundary r_type="cDNA" r_start="124" r_stop="300" r_length="177" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="88640" i_stop="88731" i_length="92">
            <donor d_prob="0.896" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="88732" g_stop="88956" g_length="225"/>
          <reference_exon_boundary r_type="cDNA" r_start="301" r_stop="525" r_length="225" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="88957" i_stop="89067" i_length="111">
            <donor d_prob="0.000" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="89068" g_stop="89196" g_length="129"/>
          <reference_exon_boundary r_type="cDNA" r_start="526" r_stop="654" r_length="129" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="89197" i_stop="91858" i_length="2662">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.991" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="91859" g_stop="92034" g_length="176"/>
          <reference_exon_boundary r_type="cDNA" r_start="655" r_stop="830" r_length="176" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0320M09.4" gen_strand="+" ref_id="SGN-E709209" ref_strand="+">
        <total_alignment_score>0.999</total_alignment_score>
        <cumulative_length_of_scored_exons>830</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0320M09.4" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E709209" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="88259" e_stop="88381"/>
          <exon e_start="88463" e_stop="88639"/>
          <exon e_start="88732" e_stop="88956"/>
          <exon e_start="89068" e_stop="89196"/>
          <exon e_start="91859" e_stop="92034"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGCTCAGTTTTTCCAGTCGAATCTGGGAGGTACCACCTCTACATATCATATGCTTGCCCATGGGCATCAAGGTGCCTGGCTTACTTGAAGATTAAAGGCCTTGATCAAGCCATTGATTTCACAGTAAGAAGTTGAATGAACTACTTGTATCTTGGACTCAAGTTTGGACTCCTAACAATCTGTTTCCGTTGTGTTGGCTTGCAGTCTGTTAAACCTGTTTGGGAGAGGACGAAGGACAGCGATGAGCACACGGGATGGGTTTTTGCTTCATCAAGCACCGAGGAAGCAGGAGCTGATCTTGATCCTCTTAATGGAGCCAAAAGCATACGGGAGCTGTATGAGCTTGCAAGTACAAACTATTCTGGGAAATACACTGTTCCGGTATTGTTTATCAATAAATAGAATCTCTAATAACATTTATTTGCTTGGTCTGTTCATATTTTTATTGATTGATGGTCTGGTTTTTGTTATAGGTTCTTTGGGATAAGAAACTGAAGACAATCGTGAACAACGAGAGTGCAGAAATAATACGCATGTTTAATAGTGAATTTAATGATATAGCTGAGAATGCAGCTTTGGACCTTTATCCTCCTCATTTGCAATCCCTAATCAATGAAGCAAATGAATGGATATATGATGGAATAAACAACGGAGTGTATCAATGTGGTTTTGCAAAGAAGCAAGAGCCTTATGATGAGGTAATCAGAAATAGACAACAGAACTCGAAGCCGTTTGCTAAACATCTTAAACCTTATAGAACTTCAATCAGTTCTATCTGAGGAAAAGTGATTACCTTTTTGTCCTTGCAGGCTGTGCAAAAAGTATACAAAGCTTTGGACAAATGTGAGGAGATACTGAGCAAGCAGAGATACATATGTGGAGATCAAGTGACTGAAGCAGATATTCGCTTGTTTGTCACCCTGATTAGGTTTGATGAGGTTAGTGAATGTTCCCTTATGGTCAAAACTAAATTATTGTCTTAGAAATATTATCAAAGTAGGCACCCAAGGGTGTGGGTTGAATGTAGTGGGTTGAAAATCATGAGGTCATAAGTTCAAATCACTGAGGGGGCAAAACTGCTTGGTGATTTCTTCTTATTTGTCCGGGCTTTGGTGGACATAGTTTACTCGGTACCTATGGTGGGAGATAGCAGGTAATCTTTGGAATTAAAAAACAACAATTATACCAAAAGGGAAAATTCTGAGGGGATATTTAGGAAGGAGATTTGTGTCTGGTATTATCACTACATTGTCATTGGTGATCAATTGGCTTGAGCTATGTAGCTTAATCCGATATGTTAGAAGAGACAGCAACACTACAGAAAGATGGAGTAATAATCATTCCAAATATAACCTTGAGTTGTCTGAAAATGTTAAAGCTTCATATACTTCTTTTCCTACAACTTCAAAATTTATTGATGTGGCAGTCTTTCCCTTATGGTGTGATACTTCAGTACTTACCCTCCGTGAAGTGCATTGATAATTAATCACTAAAACCAGTAATCTTCTCATCACTGCAACTTATAATCTGTGAAAGAGTAGCCAGATGTTTGTCAAGTAGTCACGCTAGGTGTTCGAAAACAGGCCTTCAAATAGTATCGTCCTTTTGTCTGAAAATGTACCGCCATTTCCTAAGAATTGTGTCTTTCATTCACTTGGAGAGTACCCAAGATTTACAAAGATGACTCTGTCACCACTTTAATTACCTAGTTAGTGGGAGGGTGATTCTTACGTCAAGAAAAGAATTAGTAGCTGTAATGTAATTATTAATCTTCAATAGAACAATTCTTTCCACCAAAAAGGAAACACAGAATAAAAGATTGCAATTTATTAGTCCTCTGAATTTATTTATGCTCATGGACTGTGAATGCTAAAGCTTTGGATTCCTCCTTTCTACTGCAACTTCCAAATTTGTTAGTGTGGAAGTCATCCCCTGCATAGTGAGAAAATCACATCTGTACATACTGTTAAATTGACAATTACTTGCTACTGGTCAATTAGAAGGTGGAACTTAGTAGTACCAGGCTGTAAGCGAGAACATATGCACTGCAAGCATAGGCTCTATAATAATGATGAGAGTGAAGTGAAATTAGACGGAATTGTTGTGTCTATATGCTGAGAATTCAGAGATCTAGGCTCGGTGTTTTAAAAGAATAGCATGCTATAGGGAGATTGAAATAGAAATTGATACAAGAGTGTTTTGTATGATCGGAAAATATCTAACACAGTGAAAGACAAGTTTTACAAAATGGTGCTGAGACAATGAGACTAGCTTTATTTTTATGTTTTAGTTATTTCCTGATGAGTTACATTAGAATGAATATTAGACCCTTAAGAGCTAACATATTCACAAGATCATCCAATGGTTATGGGTAAAATATAATTATGGATATTGTCTTGATAATTAGCTCTCTCCATGTTAGCGAAAACTAAAAATCAAGAAAGCTATTGAATTACAAATTAAATAAACTTAATAGGAAAAAAAAACTCAAAGTATGAAATTACTTTTCATTGATAAATGCTTGGAGAAACCTTGAGGCATTTGGGAGATTATAAAGGAAAACATTTCAGGTGTGGAAGTGGGGAAAACGTGAAGAGGTATTTCATTTCCGTGGGTATAATTAATGATGAAATAGCTCCTTGCCACGTGACTTAAGAAGGGACTTTGGAAATTGATCCAAAAGTACAACTTAGCTAGAGTCTAAATAAGAAATAACCGATCAGAAAGGATTTAGGATTGGAATTGATAGATGCGTGTTTAGGATTTAGAATTTAGGGATTAGATAGAGGAAGAGATAAGAAAGTGTATAGGCTCGTCAAGTAAAATAGAAGAGGATCTGAGATCTAAACTTAGTGAAGTATATTAAAGACAAGAAAATCATGGAATTGATGGAAAAGACATGTATGCATAAAAGAGAGCTAAATCTAAGATTAGAAACATATACAACTTATCAATATTTATAATTATAAATACAACAAAATAATGATAAAATGATATATTTTTTATATAATCATCATCAACTACGAATAACATTTTTGTATATTAAAGACAAGAAAATCATGGAATTGATGGAAAAGACGTGTATGCATAAAAGAGAGCTAAATCTAAGATTAGAAACATATACAACTTATCAATTTTTATATTATAAATACAACAAAATAATGATAAAATGATATATTTTTTATATTATCATCATCAACTACTAATATAATTTTTGTTAATTCAAATATTTGAGCTTTTTGGAATACACAATTAAATTCATATGTTGGGATATGAAAAGAATAGGGTAGATATTATTGAAAAATGATTGTGAGTAGATACATGAGCCCATATCATTTGCGACATACATGACACATACATGTAAGACTCAGCAAATACTTATCAATTTACAGAGAACATAATAAAACAGCTCTCTTTTCTAAAATATGTTTAAAAAGAACATTCAGAATAGGCGTTGAGAAGTTTGTCAGAGAATTATAAGTTTATGATTGTATGAGCATGTGACAAATACTTTACTGTGGACAAATTAACTGATGTAGGGCTTTCATCCCTTCCGTTCCACCTTCGTGTGTTGATCGAACTTGTGTTTGATAATTACAGGTGTATGCTGTCTACTTCAAGTGCAATAAGAAGCTACTTCGTGAATATCCAAATCTGTTTAATTACACCAAAGATATTTTCCAAATACCCGGCATGAGCAGTACGGTCAACATGGAACACATCAAAAAGCATTACTATAGGAGCCATCCTAGCATCAATCCTTTCGGAATCATTCC</genome_strand>
        <mrna_strand>CGCTCAGTTTTTCCAGTCGAATCTGGGAGGTACCACCTCTACATATCATATGCTTGCCCATGGGCATCAAGGTGCCTGGCTTACTTGAAGATTAAAGGCCTTGATCAAGCCATTGATTTCACA.................................................................................TCTGTTAAACCTGTTTGGGAGAGGACGAAGGACAGCGATGAGCACACGGGATGGGTTTTTGCTTCATCAAGCACCGAGGAAGCAGGAGCTGATCTTGATCCTCTTAATGGAGCCAAAAGCATACGGGAGCTGTATGAGCTTGCAAGTACAAACTATTCTGGGAAATACACTGTTCCG............................................................................................GTTCTTTGGGATAAGAAACTGAAGACAATCGTGAACAACGAGAGTGCAGAAATAATACGCATGTTTAATAGTGAATTTAATGATATAGCTGAGAATGCAGCTTTGGACCTTTATCCTCCTCATTTGCAATCCCTAATCAATGAAGCAAATGAATGGATATATGATGGAATAAACAACGGAGTGTATCAATGTGGTTTTGCAAAGAAGCAAGAGCCTTATGATGAG...............................................................................................................GCTGTGCAAAAAGTATACAAAGCTTTGGACAAATGTGAGGAGATACTGAGCAAGCAGAGATACATATGTGGAGATCAAGTGACTGAAGCAGATATTCGCTTGTTTGTCACCCTGATTAGGTTTGATGAG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGTATGCTGTCTACTTCAAGTGCAATAAGAAGCTACTTCGTGAATATCCAAATCTGTTTAATTACACCAAAGATATTTTCCAAATACCCGGCATGAGCAGTACGGTCAACATGGAACACATCAAAAAGCATTACTATAGGAGCCATCCTAGCATCAATCCTTTCGGAATCATTCC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0320M09-0CleD/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E709253" ref_strand="+" ref_description="SGN-E709253 [FA51AF06]">
      <seq>ctcagtttttccagtcgaatctgggaggtaccacctctacatatcatatgcttgcccatgggcatcaaggtgcctggcttacttgaagattaaaggccttgatcaagccattgatttcacatctgttaaacctgtttgggagaggacgaaggacagcgatgagcacacgggatgggtttttgcttcatcaagcaccgaggaagcaggagctgatcttgatcctcttaatggagccaaaagcatacgggagctgtatgagcttgcaagtacaaactattctgggaaatacactgttccggttctttgggataagaaactgaagacaatcgtgaacaacgagagtgcagaaataatacgcatgtttaatagtgaatttaatgatatagctgagaatgcagctttggacctttatcctcctcatttgcaatccctaatcaatgaagcaaatgaatggatatatgatggaataaacaacggagtgtatcaatgtggttttgcaaagaagcaagagccttatgatgaggctgtgcaaaaagtatacaaagctttggacaaatgtgaggagatactgagcaagcagagatacatatgtggagatcaagtgactgaagcagatattcgcttgtttgtcaccctgattaggtttgatgaggtgtatgctgtctacttcaagtgcaataagaagctacttcgtgaaatatcccaatctgtttaattacaccaaagatattttccaaataccccggcatgagcagtacggccaacatgggaacacatcaaaaagcattactataggagccatccctaccatcaatcctttcgg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0320M09-0CleD/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0320M09.4" temp_strand="+" temp_description="C02HBa0320M09.4  AC215438.3 htgs_phase:3 submitted_to_sgn_as:C02HBa0320M09 sequenced_by:kribb upload_account_name:korea">
        <position start="87961" stop="92325"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="88261" g_stop="88381" g_length="121"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="121" r_length="121" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="88382" i_stop="88462" i_length="81">
            <donor d_prob="0.966" d_score="1.00"/>
            <acceptor a_prob="0.988" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="88463" g_stop="88639" g_length="177"/>
          <reference_exon_boundary r_type="cDNA" r_start="122" r_stop="298" r_length="177" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="88640" i_stop="88731" i_length="92">
            <donor d_prob="0.896" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="88732" g_stop="88956" g_length="225"/>
          <reference_exon_boundary r_type="cDNA" r_start="299" r_stop="523" r_length="225" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="88957" i_stop="89067" i_length="111">
            <donor d_prob="0.000" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="89068" g_stop="89196" g_length="129"/>
          <reference_exon_boundary r_type="cDNA" r_start="524" r_stop="652" r_length="129" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="89197" i_stop="91858" i_length="2662">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.991" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="91859" g_stop="92025" g_length="167"/>
          <reference_exon_boundary r_type="cDNA" r_start="653" r_stop="823" r_length="171" r_score="0.934"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0320M09.4" gen_strand="+" ref_id="SGN-E709253" ref_strand="+">
        <total_alignment_score>0.987</total_alignment_score>
        <cumulative_length_of_scored_exons>819</cumulative_length_of_scored_exons>
        <coverage percentage="0.995" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0320M09.4" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E709253" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="88261" e_stop="88381"/>
          <exon e_start="88463" e_stop="88639"/>
          <exon e_start="88732" e_stop="88956"/>
          <exon e_start="89068" e_stop="89196"/>
          <exon e_start="91859" e_stop="92025"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTCAGTTTTTCCAGTCGAATCTGGGAGGTACCACCTCTACATATCATATGCTTGCCCATGGGCATCAAGGTGCCTGGCTTACTTGAAGATTAAAGGCCTTGATCAAGCCATTGATTTCACAGTAAGAAGTTGAATGAACTACTTGTATCTTGGACTCAAGTTTGGACTCCTAACAATCTGTTTCCGTTGTGTTGGCTTGCAGTCTGTTAAACCTGTTTGGGAGAGGACGAAGGACAGCGATGAGCACACGGGATGGGTTTTTGCTTCATCAAGCACCGAGGAAGCAGGAGCTGATCTTGATCCTCTTAATGGAGCCAAAAGCATACGGGAGCTGTATGAGCTTGCAAGTACAAACTATTCTGGGAAATACACTGTTCCGGTATTGTTTATCAATAAATAGAATCTCTAATAACATTTATTTGCTTGGTCTGTTCATATTTTTATTGATTGATGGTCTGGTTTTTGTTATAGGTTCTTTGGGATAAGAAACTGAAGACAATCGTGAACAACGAGAGTGCAGAAATAATACGCATGTTTAATAGTGAATTTAATGATATAGCTGAGAATGCAGCTTTGGACCTTTATCCTCCTCATTTGCAATCCCTAATCAATGAAGCAAATGAATGGATATATGATGGAATAAACAACGGAGTGTATCAATGTGGTTTTGCAAAGAAGCAAGAGCCTTATGATGAGGTAATCAGAAATAGACAACAGAACTCGAAGCCGTTTGCTAAACATCTTAAACCTTATAGAACTTCAATCAGTTCTATCTGAGGAAAAGTGATTACCTTTTTGTCCTTGCAGGCTGTGCAAAAAGTATACAAAGCTTTGGACAAATGTGAGGAGATACTGAGCAAGCAGAGATACATATGTGGAGATCAAGTGACTGAAGCAGATATTCGCTTGTTTGTCACCCTGATTAGGTTTGATGAGGTTAGTGAATGTTCCCTTATGGTCAAAACTAAATTATTGTCTTAGAAATATTATCAAAGTAGGCACCCAAGGGTGTGGGTTGAATGTAGTGGGTTGAAAATCATGAGGTCATAAGTTCAAATCACTGAGGGGGCAAAACTGCTTGGTGATTTCTTCTTATTTGTCCGGGCTTTGGTGGACATAGTTTACTCGGTACCTATGGTGGGAGATAGCAGGTAATCTTTGGAATTAAAAAACAACAATTATACCAAAAGGGAAAATTCTGAGGGGATATTTAGGAAGGAGATTTGTGTCTGGTATTATCACTACATTGTCATTGGTGATCAATTGGCTTGAGCTATGTAGCTTAATCCGATATGTTAGAAGAGACAGCAACACTACAGAAAGATGGAGTAATAATCATTCCAAATATAACCTTGAGTTGTCTGAAAATGTTAAAGCTTCATATACTTCTTTTCCTACAACTTCAAAATTTATTGATGTGGCAGTCTTTCCCTTATGGTGTGATACTTCAGTACTTACCCTCCGTGAAGTGCATTGATAATTAATCACTAAAACCAGTAATCTTCTCATCACTGCAACTTATAATCTGTGAAAGAGTAGCCAGATGTTTGTCAAGTAGTCACGCTAGGTGTTCGAAAACAGGCCTTCAAATAGTATCGTCCTTTTGTCTGAAAATGTACCGCCATTTCCTAAGAATTGTGTCTTTCATTCACTTGGAGAGTACCCAAGATTTACAAAGATGACTCTGTCACCACTTTAATTACCTAGTTAGTGGGAGGGTGATTCTTACGTCAAGAAAAGAATTAGTAGCTGTAATGTAATTATTAATCTTCAATAGAACAATTCTTTCCACCAAAAAGGAAACACAGAATAAAAGATTGCAATTTATTAGTCCTCTGAATTTATTTATGCTCATGGACTGTGAATGCTAAAGCTTTGGATTCCTCCTTTCTACTGCAACTTCCAAATTTGTTAGTGTGGAAGTCATCCCCTGCATAGTGAGAAAATCACATCTGTACATACTGTTAAATTGACAATTACTTGCTACTGGTCAATTAGAAGGTGGAACTTAGTAGTACCAGGCTGTAAGCGAGAACATATGCACTGCAAGCATAGGCTCTATAATAATGATGAGAGTGAAGTGAAATTAGACGGAATTGTTGTGTCTATATGCTGAGAATTCAGAGATCTAGGCTCGGTGTTTTAAAAGAATAGCATGCTATAGGGAGATTGAAATAGAAATTGATACAAGAGTGTTTTGTATGATCGGAAAATATCTAACACAGTGAAAGACAAGTTTTACAAAATGGTGCTGAGACAATGAGACTAGCTTTATTTTTATGTTTTAGTTATTTCCTGATGAGTTACATTAGAATGAATATTAGACCCTTAAGAGCTAACATATTCACAAGATCATCCAATGGTTATGGGTAAAATATAATTATGGATATTGTCTTGATAATTAGCTCTCTCCATGTTAGCGAAAACTAAAAATCAAGAAAGCTATTGAATTACAAATTAAATAAACTTAATAGGAAAAAAAAACTCAAAGTATGAAATTACTTTTCATTGATAAATGCTTGGAGAAACCTTGAGGCATTTGGGAGATTATAAAGGAAAACATTTCAGGTGTGGAAGTGGGGAAAACGTGAAGAGGTATTTCATTTCCGTGGGTATAATTAATGATGAAATAGCTCCTTGCCACGTGACTTAAGAAGGGACTTTGGAAATTGATCCAAAAGTACAACTTAGCTAGAGTCTAAATAAGAAATAACCGATCAGAAAGGATTTAGGATTGGAATTGATAGATGCGTGTTTAGGATTTAGAATTTAGGGATTAGATAGAGGAAGAGATAAGAAAGTGTATAGGCTCGTCAAGTAAAATAGAAGAGGATCTGAGATCTAAACTTAGTGAAGTATATTAAAGACAAGAAAATCATGGAATTGATGGAAAAGACATGTATGCATAAAAGAGAGCTAAATCTAAGATTAGAAACATATACAACTTATCAATATTTATAATTATAAATACAACAAAATAATGATAAAATGATATATTTTTTATATAATCATCATCAACTACGAATAACATTTTTGTATATTAAAGACAAGAAAATCATGGAATTGATGGAAAAGACGTGTATGCATAAAAGAGAGCTAAATCTAAGATTAGAAACATATACAACTTATCAATTTTTATATTATAAATACAACAAAATAATGATAAAATGATATATTTTTTATATTATCATCATCAACTACTAATATAATTTTTGTTAATTCAAATATTTGAGCTTTTTGGAATACACAATTAAATTCATATGTTGGGATATGAAAAGAATAGGGTAGATATTATTGAAAAATGATTGTGAGTAGATACATGAGCCCATATCATTTGCGACATACATGACACATACATGTAAGACTCAGCAAATACTTATCAATTTACAGAGAACATAATAAAACAGCTCTCTTTTCTAAAATATGTTTAAAAAGAACATTCAGAATAGGCGTTGAGAAGTTTGTCAGAGAATTATAAGTTTATGATTGTATGAGCATGTGACAAATACTTTACTGTGGACAAATTAACTGATGTAGGGCTTTCATCCCTTCCGTTCCACCTTCGTGTGTTGATCGAACTTGTGTTTGATAATTACAGGTGTATGCTGTCTACTTCAAGTGCAATAAGAAGCTACTTCGTG-AATATCCAAATCTGTTTAATTACACCAAAGATATTTTCCAAATACCC-GGCATGAGCAGTACGGTCAACAT-GGAACACATCAAAAAGCATTACTATAGGAGCCAT-CCTAGCATCAATCCTTTCGG</genome_strand>
        <mrna_strand>CTCAGTTTTTCCAGTCGAATCTGGGAGGTACCACCTCTACATATCATATGCTTGCCCATGGGCATCAAGGTGCCTGGCTTACTTGAAGATTAAAGGCCTTGATCAAGCCATTGATTTCACA.................................................................................TCTGTTAAACCTGTTTGGGAGAGGACGAAGGACAGCGATGAGCACACGGGATGGGTTTTTGCTTCATCAAGCACCGAGGAAGCAGGAGCTGATCTTGATCCTCTTAATGGAGCCAAAAGCATACGGGAGCTGTATGAGCTTGCAAGTACAAACTATTCTGGGAAATACACTGTTCCG............................................................................................GTTCTTTGGGATAAGAAACTGAAGACAATCGTGAACAACGAGAGTGCAGAAATAATACGCATGTTTAATAGTGAATTTAATGATATAGCTGAGAATGCAGCTTTGGACCTTTATCCTCCTCATTTGCAATCCCTAATCAATGAAGCAAATGAATGGATATATGATGGAATAAACAACGGAGTGTATCAATGTGGTTTTGCAAAGAAGCAAGAGCCTTATGATGAG...............................................................................................................GCTGTGCAAAAAGTATACAAAGCTTTGGACAAATGTGAGGAGATACTGAGCAAGCAGAGATACATATGTGGAGATCAAGTGACTGAAGCAGATATTCGCTTGTTTGTCACCCTGATTAGGTTTGATGAG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGTATGCTGTCTACTTCAAGTGCAATAAGAAGCTACTTCGTGAAATATCCCAATCTGTTTAATTACACCAAAGATATTTTCCAAATACCCCGGCATGAGCAGTACGGCCAACATGGGAACACATCAAAAAGCATTACTATAGGAGCCATCCCTACCATCAATCCTTTCGG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0320M09-0CleD/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E276287" ref_strand="+" ref_description="SGN-E276287 [cLEN-21-K2]">
      <seq>agtttttccagtcgaatatgggaggtaccacctctacatatgatatgcttgcccatgggcatcaaggtgcctggcttacttgaagattaaaggccttgatcaagccattgattacacatctgttaaacctgtttgggagaggactaaggacagcgatgagcacacgggatgggtttttgcttcatcaagcaccgaggaagcaggagctgatcttgatcctcttaatggagccaaaagcgtacgggagctgtatgagcttgcgagtacaaactattcggggaaatacactgttacggttctttgggataagaaactgaccacaatcctgaacaacgagagtgcacaaataatacgcatgtttaatagtgaatttaatgatatagctgagaatgcagttttggacctttatcctgctcatttgcgatccctaatcaatgaatcaaatgaatggatatatgatggaataaacaacggagtgtgtcaatgtggtttcgcaaagaagcaagagccttatgatgaggctgtgcagaaagtatacaaagctttggacaaatgtgaggagatactgagcaagcagagatacatatgtggagatcaagtgactgaagcagata</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0320M09-0CleD/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0320M09.4" temp_strand="+" temp_description="C02HBa0320M09.4  AC215438.3 htgs_phase:3 submitted_to_sgn_as:C02HBa0320M09 sequenced_by:kribb upload_account_name:korea">
        <position start="87964" stop="89461"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="88264" g_stop="88381" g_length="118"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="118" r_length="118" r_score="0.975"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="88382" i_stop="88462" i_length="81">
            <donor d_prob="0.966" d_score="0.98"/>
            <acceptor a_prob="0.988" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="88463" g_stop="88639" g_length="177"/>
          <reference_exon_boundary r_type="cDNA" r_start="119" r_stop="295" r_length="177" r_score="0.972"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="88640" i_stop="88731" i_length="92">
            <donor d_prob="0.896" d_score="0.94"/>
            <acceptor a_prob="1.000" a_score="0.92"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="88732" g_stop="88956" g_length="225"/>
          <reference_exon_boundary r_type="cDNA" r_start="296" r_stop="520" r_length="225" r_score="0.956"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="88957" i_stop="89067" i_length="111">
            <donor d_prob="0.000" d_score="0.96"/>
            <acceptor a_prob="0.997" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="89068" g_stop="89161" g_length="94"/>
          <reference_exon_boundary r_type="cDNA" r_start="521" r_stop="614" r_length="94" r_score="0.989"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0320M09.4" gen_strand="+" ref_id="SGN-E276287" ref_strand="+">
        <total_alignment_score>0.969</total_alignment_score>
        <cumulative_length_of_scored_exons>614</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0320M09.4" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E276287" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="88264" e_stop="88381"/>
          <exon e_start="88463" e_stop="88639"/>
          <exon e_start="88732" e_stop="88956"/>
          <exon e_start="89068" e_stop="89161"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGTTTTTCCAGTCGAATCTGGGAGGTACCACCTCTACATATCATATGCTTGCCCATGGGCATCAAGGTGCCTGGCTTACTTGAAGATTAAAGGCCTTGATCAAGCCATTGATTTCACAGTAAGAAGTTGAATGAACTACTTGTATCTTGGACTCAAGTTTGGACTCCTAACAATCTGTTTCCGTTGTGTTGGCTTGCAGTCTGTTAAACCTGTTTGGGAGAGGACGAAGGACAGCGATGAGCACACGGGATGGGTTTTTGCTTCATCAAGCACCGAGGAAGCAGGAGCTGATCTTGATCCTCTTAATGGAGCCAAAAGCATACGGGAGCTGTATGAGCTTGCAAGTACAAACTATTCTGGGAAATACACTGTTCCGGTATTGTTTATCAATAAATAGAATCTCTAATAACATTTATTTGCTTGGTCTGTTCATATTTTTATTGATTGATGGTCTGGTTTTTGTTATAGGTTCTTTGGGATAAGAAACTGAAGACAATCGTGAACAACGAGAGTGCAGAAATAATACGCATGTTTAATAGTGAATTTAATGATATAGCTGAGAATGCAGCTTTGGACCTTTATCCTCCTCATTTGCAATCCCTAATCAATGAAGCAAATGAATGGATATATGATGGAATAAACAACGGAGTGTATCAATGTGGTTTTGCAAAGAAGCAAGAGCCTTATGATGAGGTAATCAGAAATAGACAACAGAACTCGAAGCCGTTTGCTAAACATCTTAAACCTTATAGAACTTCAATCAGTTCTATCTGAGGAAAAGTGATTACCTTTTTGTCCTTGCAGGCTGTGCAAAAAGTATACAAAGCTTTGGACAAATGTGAGGAGATACTGAGCAAGCAGAGATACATATGTGGAGATCAAGTGACTGAAGCAGATA</genome_strand>
        <mrna_strand>AGTTTTTCCAGTCGAATATGGGAGGTACCACCTCTACATATGATATGCTTGCCCATGGGCATCAAGGTGCCTGGCTTACTTGAAGATTAAAGGCCTTGATCAAGCCATTGATTACACA.................................................................................TCTGTTAAACCTGTTTGGGAGAGGACTAAGGACAGCGATGAGCACACGGGATGGGTTTTTGCTTCATCAAGCACCGAGGAAGCAGGAGCTGATCTTGATCCTCTTAATGGAGCCAAAAGCGTACGGGAGCTGTATGAGCTTGCGAGTACAAACTATTCGGGGAAATACACTGTTACG............................................................................................GTTCTTTGGGATAAGAAACTGACCACAATCCTGAACAACGAGAGTGCACAAATAATACGCATGTTTAATAGTGAATTTAATGATATAGCTGAGAATGCAGTTTTGGACCTTTATCCTGCTCATTTGCGATCCCTAATCAATGAATCAAATGAATGGATATATGATGGAATAAACAACGGAGTGTGTCAATGTGGTTTCGCAAAGAAGCAAGAGCCTTATGATGAG...............................................................................................................GCTGTGCAGAAAGTATACAAAGCTTTGGACAAATGTGAGGAGATACTGAGCAAGCAGAGATACATATGTGGAGATCAAGTGACTGAAGCAGATA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0320M09-0CleD/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E238325" ref_strand="+" ref_description="SGN-E238325 [cLED-17-O11]">
      <seq>aaggtgcctggcttacttgaagattaaaggccttgatcaagccattgatttcacatctgttaaacctgtttgggagaggacgaaggacagcgatgagcacacgggatgggtttttgcttcatcaagcaccgaggaagcaggagctgatcttgatcctcttaatggagccaaaagcatacgggagctgtatgagcttgcaagtacaaactattctgggaaatacactgttccggttctttgggataagaaactgaagacaatcgtgaacaacgagagtgcagaaataatacgcatgtttaatagtgaatttaatgatatagctgagaatgcagctttggacctttatcctcctcatttgcaatccctaatcaatgaagcaaatgaatggatatatgatggaataaacaacggagtgtatcaatgtggttttgcaaagaagcaagagccttatgatgaggctgtgcaaaaagtatacaaagctttggacaaatgtgaggagatactgagcaagcagagatacatatgtggagatcaagtgactgaagcagatattcgcttgtttgtcaccctgattaggtntgatgaggtgtatgctgtctacttcaagtgcaataagaagctacttcgtgaatatccaaatctgtttaat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0320M09-0CleD/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0320M09.4" temp_strand="+" temp_description="C02HBa0320M09.4  AC215438.3 htgs_phase:3 submitted_to_sgn_as:C02HBa0320M09 sequenced_by:kribb upload_account_name:korea">
        <position start="88027" stop="92221"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="88327" g_stop="88381" g_length="55"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="55" r_length="55" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="88382" i_stop="88462" i_length="81">
            <donor d_prob="0.966" d_score="1.00"/>
            <acceptor a_prob="0.988" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="88463" g_stop="88639" g_length="177"/>
          <reference_exon_boundary r_type="cDNA" r_start="56" r_stop="232" r_length="177" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="88640" i_stop="88731" i_length="92">
            <donor d_prob="0.896" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="88732" g_stop="88956" g_length="225"/>
          <reference_exon_boundary r_type="cDNA" r_start="233" r_stop="457" r_length="225" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="88957" i_stop="89067" i_length="111">
            <donor d_prob="0.000" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="89068" g_stop="89196" g_length="129"/>
          <reference_exon_boundary r_type="cDNA" r_start="458" r_stop="586" r_length="129" r_score="0.992"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="89197" i_stop="91858" i_length="2662">
            <donor d_prob="0.999" d_score="0.98"/>
            <acceptor a_prob="0.991" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="91859" g_stop="91921" g_length="63"/>
          <reference_exon_boundary r_type="cDNA" r_start="587" r_stop="649" r_length="63" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0320M09.4" gen_strand="+" ref_id="SGN-E238325" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>649</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0320M09.4" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E238325" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="88327" e_stop="88381"/>
          <exon e_start="88463" e_stop="88639"/>
          <exon e_start="88732" e_stop="88956"/>
          <exon e_start="89068" e_stop="89196"/>
          <exon e_start="91859" e_stop="91921"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAGGTGCCTGGCTTACTTGAAGATTAAAGGCCTTGATCAAGCCATTGATTTCACAGTAAGAAGTTGAATGAACTACTTGTATCTTGGACTCAAGTTTGGACTCCTAACAATCTGTTTCCGTTGTGTTGGCTTGCAGTCTGTTAAACCTGTTTGGGAGAGGACGAAGGACAGCGATGAGCACACGGGATGGGTTTTTGCTTCATCAAGCACCGAGGAAGCAGGAGCTGATCTTGATCCTCTTAATGGAGCCAAAAGCATACGGGAGCTGTATGAGCTTGCAAGTACAAACTATTCTGGGAAATACACTGTTCCGGTATTGTTTATCAATAAATAGAATCTCTAATAACATTTATTTGCTTGGTCTGTTCATATTTTTATTGATTGATGGTCTGGTTTTTGTTATAGGTTCTTTGGGATAAGAAACTGAAGACAATCGTGAACAACGAGAGTGCAGAAATAATACGCATGTTTAATAGTGAATTTAATGATATAGCTGAGAATGCAGCTTTGGACCTTTATCCTCCTCATTTGCAATCCCTAATCAATGAAGCAAATGAATGGATATATGATGGAATAAACAACGGAGTGTATCAATGTGGTTTTGCAAAGAAGCAAGAGCCTTATGATGAGGTAATCAGAAATAGACAACAGAACTCGAAGCCGTTTGCTAAACATCTTAAACCTTATAGAACTTCAATCAGTTCTATCTGAGGAAAAGTGATTACCTTTTTGTCCTTGCAGGCTGTGCAAAAAGTATACAAAGCTTTGGACAAATGTGAGGAGATACTGAGCAAGCAGAGATACATATGTGGAGATCAAGTGACTGAAGCAGATATTCGCTTGTTTGTCACCCTGATTAGGTTTGATGAGGTTAGTGAATGTTCCCTTATGGTCAAAACTAAATTATTGTCTTAGAAATATTATCAAAGTAGGCACCCAAGGGTGTGGGTTGAATGTAGTGGGTTGAAAATCATGAGGTCATAAGTTCAAATCACTGAGGGGGCAAAACTGCTTGGTGATTTCTTCTTATTTGTCCGGGCTTTGGTGGACATAGTTTACTCGGTACCTATGGTGGGAGATAGCAGGTAATCTTTGGAATTAAAAAACAACAATTATACCAAAAGGGAAAATTCTGAGGGGATATTTAGGAAGGAGATTTGTGTCTGGTATTATCACTACATTGTCATTGGTGATCAATTGGCTTGAGCTATGTAGCTTAATCCGATATGTTAGAAGAGACAGCAACACTACAGAAAGATGGAGTAATAATCATTCCAAATATAACCTTGAGTTGTCTGAAAATGTTAAAGCTTCATATACTTCTTTTCCTACAACTTCAAAATTTATTGATGTGGCAGTCTTTCCCTTATGGTGTGATACTTCAGTACTTACCCTCCGTGAAGTGCATTGATAATTAATCACTAAAACCAGTAATCTTCTCATCACTGCAACTTATAATCTGTGAAAGAGTAGCCAGATGTTTGTCAAGTAGTCACGCTAGGTGTTCGAAAACAGGCCTTCAAATAGTATCGTCCTTTTGTCTGAAAATGTACCGCCATTTCCTAAGAATTGTGTCTTTCATTCACTTGGAGAGTACCCAAGATTTACAAAGATGACTCTGTCACCACTTTAATTACCTAGTTAGTGGGAGGGTGATTCTTACGTCAAGAAAAGAATTAGTAGCTGTAATGTAATTATTAATCTTCAATAGAACAATTCTTTCCACCAAAAAGGAAACACAGAATAAAAGATTGCAATTTATTAGTCCTCTGAATTTATTTATGCTCATGGACTGTGAATGCTAAAGCTTTGGATTCCTCCTTTCTACTGCAACTTCCAAATTTGTTAGTGTGGAAGTCATCCCCTGCATAGTGAGAAAATCACATCTGTACATACTGTTAAATTGACAATTACTTGCTACTGGTCAATTAGAAGGTGGAACTTAGTAGTACCAGGCTGTAAGCGAGAACATATGCACTGCAAGCATAGGCTCTATAATAATGATGAGAGTGAAGTGAAATTAGACGGAATTGTTGTGTCTATATGCTGAGAATTCAGAGATCTAGGCTCGGTGTTTTAAAAGAATAGCATGCTATAGGGAGATTGAAATAGAAATTGATACAAGAGTGTTTTGTATGATCGGAAAATATCTAACACAGTGAAAGACAAGTTTTACAAAATGGTGCTGAGACAATGAGACTAGCTTTATTTTTATGTTTTAGTTATTTCCTGATGAGTTACATTAGAATGAATATTAGACCCTTAAGAGCTAACATATTCACAAGATCATCCAATGGTTATGGGTAAAATATAATTATGGATATTGTCTTGATAATTAGCTCTCTCCATGTTAGCGAAAACTAAAAATCAAGAAAGCTATTGAATTACAAATTAAATAAACTTAATAGGAAAAAAAAACTCAAAGTATGAAATTACTTTTCATTGATAAATGCTTGGAGAAACCTTGAGGCATTTGGGAGATTATAAAGGAAAACATTTCAGGTGTGGAAGTGGGGAAAACGTGAAGAGGTATTTCATTTCCGTGGGTATAATTAATGATGAAATAGCTCCTTGCCACGTGACTTAAGAAGGGACTTTGGAAATTGATCCAAAAGTACAACTTAGCTAGAGTCTAAATAAGAAATAACCGATCAGAAAGGATTTAGGATTGGAATTGATAGATGCGTGTTTAGGATTTAGAATTTAGGGATTAGATAGAGGAAGAGATAAGAAAGTGTATAGGCTCGTCAAGTAAAATAGAAGAGGATCTGAGATCTAAACTTAGTGAAGTATATTAAAGACAAGAAAATCATGGAATTGATGGAAAAGACATGTATGCATAAAAGAGAGCTAAATCTAAGATTAGAAACATATACAACTTATCAATATTTATAATTATAAATACAACAAAATAATGATAAAATGATATATTTTTTATATAATCATCATCAACTACGAATAACATTTTTGTATATTAAAGACAAGAAAATCATGGAATTGATGGAAAAGACGTGTATGCATAAAAGAGAGCTAAATCTAAGATTAGAAACATATACAACTTATCAATTTTTATATTATAAATACAACAAAATAATGATAAAATGATATATTTTTTATATTATCATCATCAACTACTAATATAATTTTTGTTAATTCAAATATTTGAGCTTTTTGGAATACACAATTAAATTCATATGTTGGGATATGAAAAGAATAGGGTAGATATTATTGAAAAATGATTGTGAGTAGATACATGAGCCCATATCATTTGCGACATACATGACACATACATGTAAGACTCAGCAAATACTTATCAATTTACAGAGAACATAATAAAACAGCTCTCTTTTCTAAAATATGTTTAAAAAGAACATTCAGAATAGGCGTTGAGAAGTTTGTCAGAGAATTATAAGTTTATGATTGTATGAGCATGTGACAAATACTTTACTGTGGACAAATTAACTGATGTAGGGCTTTCATCCCTTCCGTTCCACCTTCGTGTGTTGATCGAACTTGTGTTTGATAATTACAGGTGTATGCTGTCTACTTCAAGTGCAATAAGAAGCTACTTCGTGAATATCCAAATCTGTTTAAT</genome_strand>
        <mrna_strand>AAGGTGCCTGGCTTACTTGAAGATTAAAGGCCTTGATCAAGCCATTGATTTCACA.................................................................................TCTGTTAAACCTGTTTGGGAGAGGACGAAGGACAGCGATGAGCACACGGGATGGGTTTTTGCTTCATCAAGCACCGAGGAAGCAGGAGCTGATCTTGATCCTCTTAATGGAGCCAAAAGCATACGGGAGCTGTATGAGCTTGCAAGTACAAACTATTCTGGGAAATACACTGTTCCG............................................................................................GTTCTTTGGGATAAGAAACTGAAGACAATCGTGAACAACGAGAGTGCAGAAATAATACGCATGTTTAATAGTGAATTTAATGATATAGCTGAGAATGCAGCTTTGGACCTTTATCCTCCTCATTTGCAATCCCTAATCAATGAAGCAAATGAATGGATATATGATGGAATAAACAACGGAGTGTATCAATGTGGTTTTGCAAAGAAGCAAGAGCCTTATGATGAG...............................................................................................................GCTGTGCAAAAAGTATACAAAGCTTTGGACAAATGTGAGGAGATACTGAGCAAGCAGAGATACATATGTGGAGATCAAGTGACTGAAGCAGATATTCGCTTGTTTGTCACCCTGATTAGGTNTGATGAG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGTATGCTGTCTACTTCAAGTGCAATAAGAAGCTACTTCGTGAATATCCAAATCTGTTTAAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0320M09-0CleD/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E238543" ref_strand="+" ref_description="SGN-E238543 [cLED-17-O14]">
      <seq>ctgatcttgatcctcttaatggagccaaaagcatacgggagctgtatgagctcgcaagttcatactattctgggaaatacactgatccggttctttgggataagaaactgaagacaatcgtgaacaacgagagtgcagaaataatacgcatgtttaatagtgaatttaatgatatagctgagaatgcagctttggacctttatcctgctcattggcaatccctaatcaatgaagcaaatgaatggatatatgatggaataaacaacggagtgtatgaatgtggttttgcaaagaagcaagagccttatgatgaggctgtgcaaaaagtatacaaagctttggacaaatgtgaggagatactgagcacgcatagatacatatgtggagatcaagtgactgaagcagatattcgcttgtttgtcaccctgattag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0320M09-0CleD/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0320M09.4" temp_strand="+" temp_description="C02HBa0320M09.4  AC215438.3 htgs_phase:3 submitted_to_sgn_as:C02HBa0320M09 sequenced_by:kribb upload_account_name:korea">
        <position start="88251" stop="89486"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="88551" g_stop="88639" g_length="89"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="89" r_length="89" r_score="0.955"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="88640" i_stop="88731" i_length="92">
            <donor d_prob="0.896" d_score="0.92"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="88732" g_stop="88956" g_length="225"/>
          <reference_exon_boundary r_type="cDNA" r_start="90" r_stop="314" r_length="225" r_score="0.987"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="88957" i_stop="89067" i_length="111">
            <donor d_prob="0.000" d_score="0.98"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="89068" g_stop="89186" g_length="119"/>
          <reference_exon_boundary r_type="cDNA" r_start="315" r_stop="433" r_length="119" r_score="0.983"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0320M09.4" gen_strand="+" ref_id="SGN-E238543" ref_strand="+">
        <total_alignment_score>0.979</total_alignment_score>
        <cumulative_length_of_scored_exons>433</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0320M09.4" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E238543" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="88551" e_stop="88639"/>
          <exon e_start="88732" e_stop="88956"/>
          <exon e_start="89068" e_stop="89186"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTGATCTTGATCCTCTTAATGGAGCCAAAAGCATACGGGAGCTGTATGAGCTTGCAAGTACAAACTATTCTGGGAAATACACTGTTCCGGTATTGTTTATCAATAAATAGAATCTCTAATAACATTTATTTGCTTGGTCTGTTCATATTTTTATTGATTGATGGTCTGGTTTTTGTTATAGGTTCTTTGGGATAAGAAACTGAAGACAATCGTGAACAACGAGAGTGCAGAAATAATACGCATGTTTAATAGTGAATTTAATGATATAGCTGAGAATGCAGCTTTGGACCTTTATCCTCCTCATTTGCAATCCCTAATCAATGAAGCAAATGAATGGATATATGATGGAATAAACAACGGAGTGTATCAATGTGGTTTTGCAAAGAAGCAAGAGCCTTATGATGAGGTAATCAGAAATAGACAACAGAACTCGAAGCCGTTTGCTAAACATCTTAAACCTTATAGAACTTCAATCAGTTCTATCTGAGGAAAAGTGATTACCTTTTTGTCCTTGCAGGCTGTGCAAAAAGTATACAAAGCTTTGGACAAATGTGAGGAGATACTGAGCAAGCAGAGATACATATGTGGAGATCAAGTGACTGAAGCAGATATTCGCTTGTTTGTCACCCTGATTAG</genome_strand>
        <mrna_strand>CTGATCTTGATCCTCTTAATGGAGCCAAAAGCATACGGGAGCTGTATGAGCTCGCAAGTTCATACTATTCTGGGAAATACACTGATCCG............................................................................................GTTCTTTGGGATAAGAAACTGAAGACAATCGTGAACAACGAGAGTGCAGAAATAATACGCATGTTTAATAGTGAATTTAATGATATAGCTGAGAATGCAGCTTTGGACCTTTATCCTGCTCATTGGCAATCCCTAATCAATGAAGCAAATGAATGGATATATGATGGAATAAACAACGGAGTGTATGAATGTGGTTTTGCAAAGAAGCAAGAGCCTTATGATGAG...............................................................................................................GCTGTGCAAAAAGTATACAAAGCTTTGGACAAATGTGAGGAGATACTGAGCACGCATAGATACATATGTGGAGATCAAGTGACTGAAGCAGATATTCGCTTGTTTGTCACCCTGATTAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0320M09-0CleD/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E237512" ref_strand="+" ref_description="SGN-E237512 [cLED-19-M6]">
      <seq>ctgatcttgatcctcttaatggagccaaaagcatacgggagctgtatgagcttgcaagtacaaactattctgggaaatacactgttccggttctttgggataagaaactgaagacaatcgtgaacaacgagagtgcagaaataatacgcatgtttaatagtgaatttaatgatatagctgagaatgcagctttggacctttatcctcctcatttgcaatccctaatcaatgaagcaaatgaatggatatatgatggaataaacaacggagtgtatcaatgtggttttgcaaagaagcaagagccttatgatgaggctgtgcaaaaagtatacaaagctttggacaaatgtgaggagatactgagcaagcagagatacatatgtggagatcaagtgactg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0320M09-0CleD/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0320M09.4" temp_strand="+" temp_description="C02HBa0320M09.4  AC215438.3 htgs_phase:3 submitted_to_sgn_as:C02HBa0320M09 sequenced_by:kribb upload_account_name:korea">
        <position start="88251" stop="89452"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="88551" g_stop="88639" g_length="89"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="89" r_length="89" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="88640" i_stop="88731" i_length="92">
            <donor d_prob="0.896" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="88732" g_stop="88956" g_length="225"/>
          <reference_exon_boundary r_type="cDNA" r_start="90" r_stop="314" r_length="225" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="88957" i_stop="89067" i_length="111">
            <donor d_prob="0.000" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="89068" g_stop="89152" g_length="85"/>
          <reference_exon_boundary r_type="cDNA" r_start="315" r_stop="399" r_length="85" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0320M09.4" gen_strand="+" ref_id="SGN-E237512" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>399</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0320M09.4" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E237512" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="88551" e_stop="88639"/>
          <exon e_start="88732" e_stop="88956"/>
          <exon e_start="89068" e_stop="89152"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTGATCTTGATCCTCTTAATGGAGCCAAAAGCATACGGGAGCTGTATGAGCTTGCAAGTACAAACTATTCTGGGAAATACACTGTTCCGGTATTGTTTATCAATAAATAGAATCTCTAATAACATTTATTTGCTTGGTCTGTTCATATTTTTATTGATTGATGGTCTGGTTTTTGTTATAGGTTCTTTGGGATAAGAAACTGAAGACAATCGTGAACAACGAGAGTGCAGAAATAATACGCATGTTTAATAGTGAATTTAATGATATAGCTGAGAATGCAGCTTTGGACCTTTATCCTCCTCATTTGCAATCCCTAATCAATGAAGCAAATGAATGGATATATGATGGAATAAACAACGGAGTGTATCAATGTGGTTTTGCAAAGAAGCAAGAGCCTTATGATGAGGTAATCAGAAATAGACAACAGAACTCGAAGCCGTTTGCTAAACATCTTAAACCTTATAGAACTTCAATCAGTTCTATCTGAGGAAAAGTGATTACCTTTTTGTCCTTGCAGGCTGTGCAAAAAGTATACAAAGCTTTGGACAAATGTGAGGAGATACTGAGCAAGCAGAGATACATATGTGGAGATCAAGTGACTG</genome_strand>
        <mrna_strand>CTGATCTTGATCCTCTTAATGGAGCCAAAAGCATACGGGAGCTGTATGAGCTTGCAAGTACAAACTATTCTGGGAAATACACTGTTCCG............................................................................................GTTCTTTGGGATAAGAAACTGAAGACAATCGTGAACAACGAGAGTGCAGAAATAATACGCATGTTTAATAGTGAATTTAATGATATAGCTGAGAATGCAGCTTTGGACCTTTATCCTCCTCATTTGCAATCCCTAATCAATGAAGCAAATGAATGGATATATGATGGAATAAACAACGGAGTGTATCAATGTGGTTTTGCAAAGAAGCAAGAGCCTTATGATGAG...............................................................................................................GCTGTGCAAAAAGTATACAAAGCTTTGGACAAATGTGAGGAGATACTGAGCAAGCAGAGATACATATGTGGAGATCAAGTGACTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0320M09-0CleD/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E308742" ref_strand="+" ref_description="SGN-E308742 [cLEZ-11-O20]">
      <seq>gagcttgcaagtacaaactattctgggaaatacactgttccggttctttgggataagaaactgaagacaatcgtgaacaacgagagtgcacaaataatacgcatgtttaatagtgaatttaatgatatagctgagaatgcagctttggacctttatcctcctcatttgcaatccctaatcaatgaagcaaatgaatggatatatgatggaataaacaacggagtgtatcaatgtggttttgcaaagaaacaagagccttatgatgaggctgtgcaaaaagtatacaaagctttggacaaatgtgaggagatactgatcaagcgaagatacatatgtggagatcaagtgactgaagcagatattcgcttgtttgtcaccctgattaggtttgatgaggtgtatgctgtctacttcaagtgcaataagaagctacttcctgaata</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0320M09-0CleD/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0320M09.4" temp_strand="+" temp_description="C02HBa0320M09.4  AC215438.3 htgs_phase:3 submitted_to_sgn_as:C02HBa0320M09 sequenced_by:kribb upload_account_name:korea">
        <position start="88298" stop="92205"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="88598" g_stop="88639" g_length="42"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="42" r_length="42" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="88640" i_stop="88731" i_length="92">
            <donor d_prob="0.896" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="88732" g_stop="88956" g_length="225"/>
          <reference_exon_boundary r_type="cDNA" r_start="43" r_stop="267" r_length="225" r_score="0.991"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="88957" i_stop="89067" i_length="111">
            <donor d_prob="0.000" d_score="0.98"/>
            <acceptor a_prob="0.997" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="89068" g_stop="89196" g_length="129"/>
          <reference_exon_boundary r_type="cDNA" r_start="268" r_stop="396" r_length="129" r_score="0.977"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="89197" i_stop="91858" i_length="2662">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.991" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="91859" g_stop="91905" g_length="47"/>
          <reference_exon_boundary r_type="cDNA" r_start="397" r_stop="443" r_length="47" r_score="0.979"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0320M09.4" gen_strand="+" ref_id="SGN-E308742" ref_strand="+">
        <total_alignment_score>0.986</total_alignment_score>
        <cumulative_length_of_scored_exons>443</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0320M09.4" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E308742" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="88598" e_stop="88639"/>
          <exon e_start="88732" e_stop="88956"/>
          <exon e_start="89068" e_stop="89196"/>
          <exon e_start="91859" e_stop="91905"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAGCTTGCAAGTACAAACTATTCTGGGAAATACACTGTTCCGGTATTGTTTATCAATAAATAGAATCTCTAATAACATTTATTTGCTTGGTCTGTTCATATTTTTATTGATTGATGGTCTGGTTTTTGTTATAGGTTCTTTGGGATAAGAAACTGAAGACAATCGTGAACAACGAGAGTGCAGAAATAATACGCATGTTTAATAGTGAATTTAATGATATAGCTGAGAATGCAGCTTTGGACCTTTATCCTCCTCATTTGCAATCCCTAATCAATGAAGCAAATGAATGGATATATGATGGAATAAACAACGGAGTGTATCAATGTGGTTTTGCAAAGAAGCAAGAGCCTTATGATGAGGTAATCAGAAATAGACAACAGAACTCGAAGCCGTTTGCTAAACATCTTAAACCTTATAGAACTTCAATCAGTTCTATCTGAGGAAAAGTGATTACCTTTTTGTCCTTGCAGGCTGTGCAAAAAGTATACAAAGCTTTGGACAAATGTGAGGAGATACTGAGCAAGCAGAGATACATATGTGGAGATCAAGTGACTGAAGCAGATATTCGCTTGTTTGTCACCCTGATTAGGTTTGATGAGGTTAGTGAATGTTCCCTTATGGTCAAAACTAAATTATTGTCTTAGAAATATTATCAAAGTAGGCACCCAAGGGTGTGGGTTGAATGTAGTGGGTTGAAAATCATGAGGTCATAAGTTCAAATCACTGAGGGGGCAAAACTGCTTGGTGATTTCTTCTTATTTGTCCGGGCTTTGGTGGACATAGTTTACTCGGTACCTATGGTGGGAGATAGCAGGTAATCTTTGGAATTAAAAAACAACAATTATACCAAAAGGGAAAATTCTGAGGGGATATTTAGGAAGGAGATTTGTGTCTGGTATTATCACTACATTGTCATTGGTGATCAATTGGCTTGAGCTATGTAGCTTAATCCGATATGTTAGAAGAGACAGCAACACTACAGAAAGATGGAGTAATAATCATTCCAAATATAACCTTGAGTTGTCTGAAAATGTTAAAGCTTCATATACTTCTTTTCCTACAACTTCAAAATTTATTGATGTGGCAGTCTTTCCCTTATGGTGTGATACTTCAGTACTTACCCTCCGTGAAGTGCATTGATAATTAATCACTAAAACCAGTAATCTTCTCATCACTGCAACTTATAATCTGTGAAAGAGTAGCCAGATGTTTGTCAAGTAGTCACGCTAGGTGTTCGAAAACAGGCCTTCAAATAGTATCGTCCTTTTGTCTGAAAATGTACCGCCATTTCCTAAGAATTGTGTCTTTCATTCACTTGGAGAGTACCCAAGATTTACAAAGATGACTCTGTCACCACTTTAATTACCTAGTTAGTGGGAGGGTGATTCTTACGTCAAGAAAAGAATTAGTAGCTGTAATGTAATTATTAATCTTCAATAGAACAATTCTTTCCACCAAAAAGGAAACACAGAATAAAAGATTGCAATTTATTAGTCCTCTGAATTTATTTATGCTCATGGACTGTGAATGCTAAAGCTTTGGATTCCTCCTTTCTACTGCAACTTCCAAATTTGTTAGTGTGGAAGTCATCCCCTGCATAGTGAGAAAATCACATCTGTACATACTGTTAAATTGACAATTACTTGCTACTGGTCAATTAGAAGGTGGAACTTAGTAGTACCAGGCTGTAAGCGAGAACATATGCACTGCAAGCATAGGCTCTATAATAATGATGAGAGTGAAGTGAAATTAGACGGAATTGTTGTGTCTATATGCTGAGAATTCAGAGATCTAGGCTCGGTGTTTTAAAAGAATAGCATGCTATAGGGAGATTGAAATAGAAATTGATACAAGAGTGTTTTGTATGATCGGAAAATATCTAACACAGTGAAAGACAAGTTTTACAAAATGGTGCTGAGACAATGAGACTAGCTTTATTTTTATGTTTTAGTTATTTCCTGATGAGTTACATTAGAATGAATATTAGACCCTTAAGAGCTAACATATTCACAAGATCATCCAATGGTTATGGGTAAAATATAATTATGGATATTGTCTTGATAATTAGCTCTCTCCATGTTAGCGAAAACTAAAAATCAAGAAAGCTATTGAATTACAAATTAAATAAACTTAATAGGAAAAAAAAACTCAAAGTATGAAATTACTTTTCATTGATAAATGCTTGGAGAAACCTTGAGGCATTTGGGAGATTATAAAGGAAAACATTTCAGGTGTGGAAGTGGGGAAAACGTGAAGAGGTATTTCATTTCCGTGGGTATAATTAATGATGAAATAGCTCCTTGCCACGTGACTTAAGAAGGGACTTTGGAAATTGATCCAAAAGTACAACTTAGCTAGAGTCTAAATAAGAAATAACCGATCAGAAAGGATTTAGGATTGGAATTGATAGATGCGTGTTTAGGATTTAGAATTTAGGGATTAGATAGAGGAAGAGATAAGAAAGTGTATAGGCTCGTCAAGTAAAATAGAAGAGGATCTGAGATCTAAACTTAGTGAAGTATATTAAAGACAAGAAAATCATGGAATTGATGGAAAAGACATGTATGCATAAAAGAGAGCTAAATCTAAGATTAGAAACATATACAACTTATCAATATTTATAATTATAAATACAACAAAATAATGATAAAATGATATATTTTTTATATAATCATCATCAACTACGAATAACATTTTTGTATATTAAAGACAAGAAAATCATGGAATTGATGGAAAAGACGTGTATGCATAAAAGAGAGCTAAATCTAAGATTAGAAACATATACAACTTATCAATTTTTATATTATAAATACAACAAAATAATGATAAAATGATATATTTTTTATATTATCATCATCAACTACTAATATAATTTTTGTTAATTCAAATATTTGAGCTTTTTGGAATACACAATTAAATTCATATGTTGGGATATGAAAAGAATAGGGTAGATATTATTGAAAAATGATTGTGAGTAGATACATGAGCCCATATCATTTGCGACATACATGACACATACATGTAAGACTCAGCAAATACTTATCAATTTACAGAGAACATAATAAAACAGCTCTCTTTTCTAAAATATGTTTAAAAAGAACATTCAGAATAGGCGTTGAGAAGTTTGTCAGAGAATTATAAGTTTATGATTGTATGAGCATGTGACAAATACTTTACTGTGGACAAATTAACTGATGTAGGGCTTTCATCCCTTCCGTTCCACCTTCGTGTGTTGATCGAACTTGTGTTTGATAATTACAGGTGTATGCTGTCTACTTCAAGTGCAATAAGAAGCTACTTCGTGAATA</genome_strand>
        <mrna_strand>GAGCTTGCAAGTACAAACTATTCTGGGAAATACACTGTTCCG............................................................................................GTTCTTTGGGATAAGAAACTGAAGACAATCGTGAACAACGAGAGTGCACAAATAATACGCATGTTTAATAGTGAATTTAATGATATAGCTGAGAATGCAGCTTTGGACCTTTATCCTCCTCATTTGCAATCCCTAATCAATGAAGCAAATGAATGGATATATGATGGAATAAACAACGGAGTGTATCAATGTGGTTTTGCAAAGAAACAAGAGCCTTATGATGAG...............................................................................................................GCTGTGCAAAAAGTATACAAAGCTTTGGACAAATGTGAGGAGATACTGATCAAGCGAAGATACATATGTGGAGATCAAGTGACTGAAGCAGATATTCGCTTGTTTGTCACCCTGATTAGGTTTGATGAG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGTATGCTGTCTACTTCAAGTGCAATAAGAAGCTACTTCCTGAATA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0320M09-0CleD/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E233748" ref_strand="+" ref_description="SGN-E233748 [cLED-14-M17]">
      <seq>cggttctttgggataagaaactgaagacaatcgtgaacaacgagagtgcagaaataatacgcatgtttaatagtgaatttaatgatatagctgagaatgcagctttggacctttatcctcctcatttgcaatccctaatcaatgaagcaaatgaatggatatatgatggaataaacaacggagtgtatcaatgtggttttgcaaagaagcaagagccttatgatgaggctgtgcaaaaagtatacaaagctttggacaaatgtgaggagatactgagcaagcagagatacatatgtggagatcaagtgactgaagcagatattcgcttgtttgtcaccctgattaggtttgatgaggtgtatgctgtctacttcaagtgcaataagaagcta</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0320M09-0CleD/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0320M09.4" temp_strand="+" temp_description="C02HBa0320M09.4  AC215438.3 htgs_phase:3 submitted_to_sgn_as:C02HBa0320M09 sequenced_by:kribb upload_account_name:korea">
        <position start="88431" stop="92194"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="88638" g_stop="88639" g_length="2"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="2" r_length="2" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="88640" i_stop="88731" i_length="92">
            <donor d_prob="0.896" d_score="0.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="88732" g_stop="88956" g_length="225"/>
          <reference_exon_boundary r_type="cDNA" r_start="3" r_stop="227" r_length="225" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="88957" i_stop="89067" i_length="111">
            <donor d_prob="0.000" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="89068" g_stop="89196" g_length="129"/>
          <reference_exon_boundary r_type="cDNA" r_start="228" r_stop="356" r_length="129" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="89197" i_stop="91858" i_length="2662">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.991" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="91859" g_stop="91894" g_length="36"/>
          <reference_exon_boundary r_type="cDNA" r_start="357" r_stop="392" r_length="36" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0320M09.4" gen_strand="+" ref_id="SGN-E233748" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>392</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0320M09.4" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E233748" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="88638" e_stop="88639"/>
          <exon e_start="88732" e_stop="88956"/>
          <exon e_start="89068" e_stop="89196"/>
          <exon e_start="91859" e_stop="91894"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CGGTATTGTTTATCAATAAATAGAATCTCTAATAACATTTATTTGCTTGGTCTGTTCATATTTTTATTGATTGATGGTCTGGTTTTTGTTATAGGTTCTTTGGGATAAGAAACTGAAGACAATCGTGAACAACGAGAGTGCAGAAATAATACGCATGTTTAATAGTGAATTTAATGATATAGCTGAGAATGCAGCTTTGGACCTTTATCCTCCTCATTTGCAATCCCTAATCAATGAAGCAAATGAATGGATATATGATGGAATAAACAACGGAGTGTATCAATGTGGTTTTGCAAAGAAGCAAGAGCCTTATGATGAGGTAATCAGAAATAGACAACAGAACTCGAAGCCGTTTGCTAAACATCTTAAACCTTATAGAACTTCAATCAGTTCTATCTGAGGAAAAGTGATTACCTTTTTGTCCTTGCAGGCTGTGCAAAAAGTATACAAAGCTTTGGACAAATGTGAGGAGATACTGAGCAAGCAGAGATACATATGTGGAGATCAAGTGACTGAAGCAGATATTCGCTTGTTTGTCACCCTGATTAGGTTTGATGAGGTTAGTGAATGTTCCCTTATGGTCAAAACTAAATTATTGTCTTAGAAATATTATCAAAGTAGGCACCCAAGGGTGTGGGTTGAATGTAGTGGGTTGAAAATCATGAGGTCATAAGTTCAAATCACTGAGGGGGCAAAACTGCTTGGTGATTTCTTCTTATTTGTCCGGGCTTTGGTGGACATAGTTTACTCGGTACCTATGGTGGGAGATAGCAGGTAATCTTTGGAATTAAAAAACAACAATTATACCAAAAGGGAAAATTCTGAGGGGATATTTAGGAAGGAGATTTGTGTCTGGTATTATCACTACATTGTCATTGGTGATCAATTGGCTTGAGCTATGTAGCTTAATCCGATATGTTAGAAGAGACAGCAACACTACAGAAAGATGGAGTAATAATCATTCCAAATATAACCTTGAGTTGTCTGAAAATGTTAAAGCTTCATATACTTCTTTTCCTACAACTTCAAAATTTATTGATGTGGCAGTCTTTCCCTTATGGTGTGATACTTCAGTACTTACCCTCCGTGAAGTGCATTGATAATTAATCACTAAAACCAGTAATCTTCTCATCACTGCAACTTATAATCTGTGAAAGAGTAGCCAGATGTTTGTCAAGTAGTCACGCTAGGTGTTCGAAAACAGGCCTTCAAATAGTATCGTCCTTTTGTCTGAAAATGTACCGCCATTTCCTAAGAATTGTGTCTTTCATTCACTTGGAGAGTACCCAAGATTTACAAAGATGACTCTGTCACCACTTTAATTACCTAGTTAGTGGGAGGGTGATTCTTACGTCAAGAAAAGAATTAGTAGCTGTAATGTAATTATTAATCTTCAATAGAACAATTCTTTCCACCAAAAAGGAAACACAGAATAAAAGATTGCAATTTATTAGTCCTCTGAATTTATTTATGCTCATGGACTGTGAATGCTAAAGCTTTGGATTCCTCCTTTCTACTGCAACTTCCAAATTTGTTAGTGTGGAAGTCATCCCCTGCATAGTGAGAAAATCACATCTGTACATACTGTTAAATTGACAATTACTTGCTACTGGTCAATTAGAAGGTGGAACTTAGTAGTACCAGGCTGTAAGCGAGAACATATGCACTGCAAGCATAGGCTCTATAATAATGATGAGAGTGAAGTGAAATTAGACGGAATTGTTGTGTCTATATGCTGAGAATTCAGAGATCTAGGCTCGGTGTTTTAAAAGAATAGCATGCTATAGGGAGATTGAAATAGAAATTGATACAAGAGTGTTTTGTATGATCGGAAAATATCTAACACAGTGAAAGACAAGTTTTACAAAATGGTGCTGAGACAATGAGACTAGCTTTATTTTTATGTTTTAGTTATTTCCTGATGAGTTACATTAGAATGAATATTAGACCCTTAAGAGCTAACATATTCACAAGATCATCCAATGGTTATGGGTAAAATATAATTATGGATATTGTCTTGATAATTAGCTCTCTCCATGTTAGCGAAAACTAAAAATCAAGAAAGCTATTGAATTACAAATTAAATAAACTTAATAGGAAAAAAAAACTCAAAGTATGAAATTACTTTTCATTGATAAATGCTTGGAGAAACCTTGAGGCATTTGGGAGATTATAAAGGAAAACATTTCAGGTGTGGAAGTGGGGAAAACGTGAAGAGGTATTTCATTTCCGTGGGTATAATTAATGATGAAATAGCTCCTTGCCACGTGACTTAAGAAGGGACTTTGGAAATTGATCCAAAAGTACAACTTAGCTAGAGTCTAAATAAGAAATAACCGATCAGAAAGGATTTAGGATTGGAATTGATAGATGCGTGTTTAGGATTTAGAATTTAGGGATTAGATAGAGGAAGAGATAAGAAAGTGTATAGGCTCGTCAAGTAAAATAGAAGAGGATCTGAGATCTAAACTTAGTGAAGTATATTAAAGACAAGAAAATCATGGAATTGATGGAAAAGACATGTATGCATAAAAGAGAGCTAAATCTAAGATTAGAAACATATACAACTTATCAATATTTATAATTATAAATACAACAAAATAATGATAAAATGATATATTTTTTATATAATCATCATCAACTACGAATAACATTTTTGTATATTAAAGACAAGAAAATCATGGAATTGATGGAAAAGACGTGTATGCATAAAAGAGAGCTAAATCTAAGATTAGAAACATATACAACTTATCAATTTTTATATTATAAATACAACAAAATAATGATAAAATGATATATTTTTTATATTATCATCATCAACTACTAATATAATTTTTGTTAATTCAAATATTTGAGCTTTTTGGAATACACAATTAAATTCATATGTTGGGATATGAAAAGAATAGGGTAGATATTATTGAAAAATGATTGTGAGTAGATACATGAGCCCATATCATTTGCGACATACATGACACATACATGTAAGACTCAGCAAATACTTATCAATTTACAGAGAACATAATAAAACAGCTCTCTTTTCTAAAATATGTTTAAAAAGAACATTCAGAATAGGCGTTGAGAAGTTTGTCAGAGAATTATAAGTTTATGATTGTATGAGCATGTGACAAATACTTTACTGTGGACAAATTAACTGATGTAGGGCTTTCATCCCTTCCGTTCCACCTTCGTGTGTTGATCGAACTTGTGTTTGATAATTACAGGTGTATGCTGTCTACTTCAAGTGCAATAAGAAGCTA</genome_strand>
        <mrna_strand>CG............................................................................................GTTCTTTGGGATAAGAAACTGAAGACAATCGTGAACAACGAGAGTGCAGAAATAATACGCATGTTTAATAGTGAATTTAATGATATAGCTGAGAATGCAGCTTTGGACCTTTATCCTCCTCATTTGCAATCCCTAATCAATGAAGCAAATGAATGGATATATGATGGAATAAACAACGGAGTGTATCAATGTGGTTTTGCAAAGAAGCAAGAGCCTTATGATGAG...............................................................................................................GCTGTGCAAAAAGTATACAAAGCTTTGGACAAATGTGAGGAGATACTGAGCAAGCAGAGATACATATGTGGAGATCAAGTGACTGAAGCAGATATTCGCTTGTTTGTCACCCTGATTAGGTTTGATGAG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGTATGCTGTCTACTTCAAGTGCAATAAGAAGCTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0320M09-0CleD/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E349094" ref_strand="+" ref_description="SGN-E349094 [cTOS-2-B19]">
      <seq>atcaatgaagcaaatgaatggatatatgatggaataaacaacggagtgtatcaatgtggttttgcaaagaagcaagagccttatgatgaggctgtgcaaaaagtatacaaagctttggacaaatgtgaggagatactgagcaagcagagatacatatgtggagatcaagtgactgaagcagatattcgcttgtttgtcaccctgattaggtttgatgaggtgtatgctgtctacttcaagtgcaataagaagctacttcgtgaatatccaaatctgtttaattacaccaaagatattttccaaatacccggcatgagcagtacggtcaacatggaacacatcaaaaagcattactataggagccatcctagcatcaatcctttcggaatcattccccagggtccaaatatcgactattcctctccacatgatcgagagaagttctctaagtaggattggtacataatctgagcatgcatttcaaactccggtcatccttttcactccttaaggttcaaggagtatgtggagttgctacaagtactgatgctgcctcaatcttcggctttttatagcgtaaattatcttataagagatgntaagtgtgctagtttttttttttgtaaagtaaggagttgaaacaagagcttctgctatatttaccgtttgttcatcctaaaagtgtttctgt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0320M09-0CleD/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0320M09.4" temp_strand="+" temp_description="C02HBa0320M09.4  AC215438.3 htgs_phase:3 submitted_to_sgn_as:C02HBa0320M09 sequenced_by:kribb upload_account_name:korea">
        <position start="88567" stop="92630"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="88867" g_stop="88956" g_length="90"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="90" r_length="90" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="88957" i_stop="89067" i_length="111">
            <donor d_prob="0.000" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="89068" g_stop="89196" g_length="129"/>
          <reference_exon_boundary r_type="cDNA" r_start="91" r_stop="219" r_length="129" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="89197" i_stop="91858" i_length="2662">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.991" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="91859" g_stop="92330" g_length="472"/>
          <reference_exon_boundary r_type="cDNA" r_start="220" r_stop="691" r_length="472" r_score="0.994"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0320M09.4" gen_strand="+" ref_id="SGN-E349094" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>691</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0320M09.4" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E349094" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="88867" e_stop="88956"/>
          <exon e_start="89068" e_stop="89196"/>
          <exon e_start="91859" e_stop="92330"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATCAATGAAGCAAATGAATGGATATATGATGGAATAAACAACGGAGTGTATCAATGTGGTTTTGCAAAGAAGCAAGAGCCTTATGATGAGGTAATCAGAAATAGACAACAGAACTCGAAGCCGTTTGCTAAACATCTTAAACCTTATAGAACTTCAATCAGTTCTATCTGAGGAAAAGTGATTACCTTTTTGTCCTTGCAGGCTGTGCAAAAAGTATACAAAGCTTTGGACAAATGTGAGGAGATACTGAGCAAGCAGAGATACATATGTGGAGATCAAGTGACTGAAGCAGATATTCGCTTGTTTGTCACCCTGATTAGGTTTGATGAGGTTAGTGAATGTTCCCTTATGGTCAAAACTAAATTATTGTCTTAGAAATATTATCAAAGTAGGCACCCAAGGGTGTGGGTTGAATGTAGTGGGTTGAAAATCATGAGGTCATAAGTTCAAATCACTGAGGGGGCAAAACTGCTTGGTGATTTCTTCTTATTTGTCCGGGCTTTGGTGGACATAGTTTACTCGGTACCTATGGTGGGAGATAGCAGGTAATCTTTGGAATTAAAAAACAACAATTATACCAAAAGGGAAAATTCTGAGGGGATATTTAGGAAGGAGATTTGTGTCTGGTATTATCACTACATTGTCATTGGTGATCAATTGGCTTGAGCTATGTAGCTTAATCCGATATGTTAGAAGAGACAGCAACACTACAGAAAGATGGAGTAATAATCATTCCAAATATAACCTTGAGTTGTCTGAAAATGTTAAAGCTTCATATACTTCTTTTCCTACAACTTCAAAATTTATTGATGTGGCAGTCTTTCCCTTATGGTGTGATACTTCAGTACTTACCCTCCGTGAAGTGCATTGATAATTAATCACTAAAACCAGTAATCTTCTCATCACTGCAACTTATAATCTGTGAAAGAGTAGCCAGATGTTTGTCAAGTAGTCACGCTAGGTGTTCGAAAACAGGCCTTCAAATAGTATCGTCCTTTTGTCTGAAAATGTACCGCCATTTCCTAAGAATTGTGTCTTTCATTCACTTGGAGAGTACCCAAGATTTACAAAGATGACTCTGTCACCACTTTAATTACCTAGTTAGTGGGAGGGTGATTCTTACGTCAAGAAAAGAATTAGTAGCTGTAATGTAATTATTAATCTTCAATAGAACAATTCTTTCCACCAAAAAGGAAACACAGAATAAAAGATTGCAATTTATTAGTCCTCTGAATTTATTTATGCTCATGGACTGTGAATGCTAAAGCTTTGGATTCCTCCTTTCTACTGCAACTTCCAAATTTGTTAGTGTGGAAGTCATCCCCTGCATAGTGAGAAAATCACATCTGTACATACTGTTAAATTGACAATTACTTGCTACTGGTCAATTAGAAGGTGGAACTTAGTAGTACCAGGCTGTAAGCGAGAACATATGCACTGCAAGCATAGGCTCTATAATAATGATGAGAGTGAAGTGAAATTAGACGGAATTGTTGTGTCTATATGCTGAGAATTCAGAGATCTAGGCTCGGTGTTTTAAAAGAATAGCATGCTATAGGGAGATTGAAATAGAAATTGATACAAGAGTGTTTTGTATGATCGGAAAATATCTAACACAGTGAAAGACAAGTTTTACAAAATGGTGCTGAGACAATGAGACTAGCTTTATTTTTATGTTTTAGTTATTTCCTGATGAGTTACATTAGAATGAATATTAGACCCTTAAGAGCTAACATATTCACAAGATCATCCAATGGTTATGGGTAAAATATAATTATGGATATTGTCTTGATAATTAGCTCTCTCCATGTTAGCGAAAACTAAAAATCAAGAAAGCTATTGAATTACAAATTAAATAAACTTAATAGGAAAAAAAAACTCAAAGTATGAAATTACTTTTCATTGATAAATGCTTGGAGAAACCTTGAGGCATTTGGGAGATTATAAAGGAAAACATTTCAGGTGTGGAAGTGGGGAAAACGTGAAGAGGTATTTCATTTCCGTGGGTATAATTAATGATGAAATAGCTCCTTGCCACGTGACTTAAGAAGGGACTTTGGAAATTGATCCAAAAGTACAACTTAGCTAGAGTCTAAATAAGAAATAACCGATCAGAAAGGATTTAGGATTGGAATTGATAGATGCGTGTTTAGGATTTAGAATTTAGGGATTAGATAGAGGAAGAGATAAGAAAGTGTATAGGCTCGTCAAGTAAAATAGAAGAGGATCTGAGATCTAAACTTAGTGAAGTATATTAAAGACAAGAAAATCATGGAATTGATGGAAAAGACATGTATGCATAAAAGAGAGCTAAATCTAAGATTAGAAACATATACAACTTATCAATATTTATAATTATAAATACAACAAAATAATGATAAAATGATATATTTTTTATATAATCATCATCAACTACGAATAACATTTTTGTATATTAAAGACAAGAAAATCATGGAATTGATGGAAAAGACGTGTATGCATAAAAGAGAGCTAAATCTAAGATTAGAAACATATACAACTTATCAATTTTTATATTATAAATACAACAAAATAATGATAAAATGATATATTTTTTATATTATCATCATCAACTACTAATATAATTTTTGTTAATTCAAATATTTGAGCTTTTTGGAATACACAATTAAATTCATATGTTGGGATATGAAAAGAATAGGGTAGATATTATTGAAAAATGATTGTGAGTAGATACATGAGCCCATATCATTTGCGACATACATGACACATACATGTAAGACTCAGCAAATACTTATCAATTTACAGAGAACATAATAAAACAGCTCTCTTTTCTAAAATATGTTTAAAAAGAACATTCAGAATAGGCGTTGAGAAGTTTGTCAGAGAATTATAAGTTTATGATTGTATGAGCATGTGACAAATACTTTACTGTGGACAAATTAACTGATGTAGGGCTTTCATCCCTTCCGTTCCACCTTCGTGTGTTGATCGAACTTGTGTTTGATAATTACAGGTGTATGCTGTCTACTTCAAGTGCAATAAGAAGCTACTTCGTGAATATCCAAATCTGTTTAATTACACCAAAGATATTTTCCAAATACCCGGCATGAGCAGTACGGTCAACATGGAACACATCAAAAAGCATTACTATAGGAGCCATCCTAGCATCAATCCTTTCGGAATCATTCCCCAGGGTCCAAATATCGACTATTCCTCTCCACATGATCGAGAGAAGTTCTCTAAGTAGGATTGGTACATAATCTGAGCATGCATTTCAAACTCCGGTCATCCTTTTCACTCCTTAAGGTTCAAGGAGTATGTGGAGTTGCTACAAGTACTGATGCTGCCTCAATCTTCGGCTTTTTATAGCGTAAATTATCTTATAAGAGATG-TAAGTTGTGCTAGTTTTTTTTTTTGTAAAGTAAGGAGTTGAAACAAGAGCTTCTGCTATATTTACCGTTTGTTCATCCTAAAAGTGTTTCTGT</genome_strand>
        <mrna_strand>ATCAATGAAGCAAATGAATGGATATATGATGGAATAAACAACGGAGTGTATCAATGTGGTTTTGCAAAGAAGCAAGAGCCTTATGATGAG...............................................................................................................GCTGTGCAAAAAGTATACAAAGCTTTGGACAAATGTGAGGAGATACTGAGCAAGCAGAGATACATATGTGGAGATCAAGTGACTGAAGCAGATATTCGCTTGTTTGTCACCCTGATTAGGTTTGATGAG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGTATGCTGTCTACTTCAAGTGCAATAAGAAGCTACTTCGTGAATATCCAAATCTGTTTAATTACACCAAAGATATTTTCCAAATACCCGGCATGAGCAGTACGGTCAACATGGAACACATCAAAAAGCATTACTATAGGAGCCATCCTAGCATCAATCCTTTCGGAATCATTCCCCAGGGTCCAAATATCGACTATTCCTCTCCACATGATCGAGAGAAGTTCTCTAAGTAGGATTGGTACATAATCTGAGCATGCATTTCAAACTCCGGTCATCCTTTTCACTCCTTAAGGTTCAAGGAGTATGTGGAGTTGCTACAAGTACTGATGCTGCCTCAATCTTCGGCTTTTTATAGCGTAAATTATCTTATAAGAGATGNTAAG-TGTGCTAGTTTTTTTTTTTGTAAAGTAAGGAGTTGAAACAAGAGCTTCTGCTATATTTACCGTTTGTTCATCCTAAAAGTGTTTCTGT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0320M09-0CleD/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E350279" ref_strand="+" ref_description="SGN-E350279 [cTOS-4-F16]">
      <seq>ttttgcaaagaagcaagagccttatgatgaggctgtgcaaaaagtatacaaagctttggacaaatgtgaggagatactgagcaagcagagatacatatgtggagatcaagtgactgaagcagatattcgcttgtttgtcaccctgattaggtttgatgaggtgtatgctgtctacttcaagtgcaataagaagctacttcgtgaatatccaaatctgtttaattacaccaaagatattttccaaatacccggcatgagcagtacggtcaacatggaacacatcaaaaagcattactataggagccatcctagcatcaatcctttcggaatcattccccagggtccaaatatcgactattcctctccacatgatcgagagaagttctctaagtaggattggtacataatctgagcatgcatttcaaactccggtcatccttttcactccttaaggttcaaggagtatgtggagttgctacaagtactgatgctgcctcaatcttcggctttttatagcgtaaattatcttataagagatgtaagttgtgctagtttttttttttgtaaagtaaggagttgaaacaagagcttctgctatatttaccgtttgttcatcctaaaagtgtttctgtagagttgctacaacttgtagtttctcatgaatctcagttttatgcagtgttgaattatc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0320M09-0CleD/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0320M09.4" temp_strand="+" temp_description="C02HBa0320M09.4  AC215438.3 htgs_phase:3 submitted_to_sgn_as:C02HBa0320M09 sequenced_by:kribb upload_account_name:korea">
        <position start="88626" stop="92689"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="88926" g_stop="88956" g_length="31"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="31" r_length="31" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="88957" i_stop="89067" i_length="111">
            <donor d_prob="0.000" d_score="0.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="89068" g_stop="89196" g_length="129"/>
          <reference_exon_boundary r_type="cDNA" r_start="32" r_stop="160" r_length="129" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="89197" i_stop="91858" i_length="2662">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.991" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="91859" g_stop="92389" g_length="531"/>
          <reference_exon_boundary r_type="cDNA" r_start="161" r_stop="691" r_length="531" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0320M09.4" gen_strand="+" ref_id="SGN-E350279" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>691</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0320M09.4" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E350279" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="88926" e_stop="88956"/>
          <exon e_start="89068" e_stop="89196"/>
          <exon e_start="91859" e_stop="92389"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTTGCAAAGAAGCAAGAGCCTTATGATGAGGTAATCAGAAATAGACAACAGAACTCGAAGCCGTTTGCTAAACATCTTAAACCTTATAGAACTTCAATCAGTTCTATCTGAGGAAAAGTGATTACCTTTTTGTCCTTGCAGGCTGTGCAAAAAGTATACAAAGCTTTGGACAAATGTGAGGAGATACTGAGCAAGCAGAGATACATATGTGGAGATCAAGTGACTGAAGCAGATATTCGCTTGTTTGTCACCCTGATTAGGTTTGATGAGGTTAGTGAATGTTCCCTTATGGTCAAAACTAAATTATTGTCTTAGAAATATTATCAAAGTAGGCACCCAAGGGTGTGGGTTGAATGTAGTGGGTTGAAAATCATGAGGTCATAAGTTCAAATCACTGAGGGGGCAAAACTGCTTGGTGATTTCTTCTTATTTGTCCGGGCTTTGGTGGACATAGTTTACTCGGTACCTATGGTGGGAGATAGCAGGTAATCTTTGGAATTAAAAAACAACAATTATACCAAAAGGGAAAATTCTGAGGGGATATTTAGGAAGGAGATTTGTGTCTGGTATTATCACTACATTGTCATTGGTGATCAATTGGCTTGAGCTATGTAGCTTAATCCGATATGTTAGAAGAGACAGCAACACTACAGAAAGATGGAGTAATAATCATTCCAAATATAACCTTGAGTTGTCTGAAAATGTTAAAGCTTCATATACTTCTTTTCCTACAACTTCAAAATTTATTGATGTGGCAGTCTTTCCCTTATGGTGTGATACTTCAGTACTTACCCTCCGTGAAGTGCATTGATAATTAATCACTAAAACCAGTAATCTTCTCATCACTGCAACTTATAATCTGTGAAAGAGTAGCCAGATGTTTGTCAAGTAGTCACGCTAGGTGTTCGAAAACAGGCCTTCAAATAGTATCGTCCTTTTGTCTGAAAATGTACCGCCATTTCCTAAGAATTGTGTCTTTCATTCACTTGGAGAGTACCCAAGATTTACAAAGATGACTCTGTCACCACTTTAATTACCTAGTTAGTGGGAGGGTGATTCTTACGTCAAGAAAAGAATTAGTAGCTGTAATGTAATTATTAATCTTCAATAGAACAATTCTTTCCACCAAAAAGGAAACACAGAATAAAAGATTGCAATTTATTAGTCCTCTGAATTTATTTATGCTCATGGACTGTGAATGCTAAAGCTTTGGATTCCTCCTTTCTACTGCAACTTCCAAATTTGTTAGTGTGGAAGTCATCCCCTGCATAGTGAGAAAATCACATCTGTACATACTGTTAAATTGACAATTACTTGCTACTGGTCAATTAGAAGGTGGAACTTAGTAGTACCAGGCTGTAAGCGAGAACATATGCACTGCAAGCATAGGCTCTATAATAATGATGAGAGTGAAGTGAAATTAGACGGAATTGTTGTGTCTATATGCTGAGAATTCAGAGATCTAGGCTCGGTGTTTTAAAAGAATAGCATGCTATAGGGAGATTGAAATAGAAATTGATACAAGAGTGTTTTGTATGATCGGAAAATATCTAACACAGTGAAAGACAAGTTTTACAAAATGGTGCTGAGACAATGAGACTAGCTTTATTTTTATGTTTTAGTTATTTCCTGATGAGTTACATTAGAATGAATATTAGACCCTTAAGAGCTAACATATTCACAAGATCATCCAATGGTTATGGGTAAAATATAATTATGGATATTGTCTTGATAATTAGCTCTCTCCATGTTAGCGAAAACTAAAAATCAAGAAAGCTATTGAATTACAAATTAAATAAACTTAATAGGAAAAAAAAACTCAAAGTATGAAATTACTTTTCATTGATAAATGCTTGGAGAAACCTTGAGGCATTTGGGAGATTATAAAGGAAAACATTTCAGGTGTGGAAGTGGGGAAAACGTGAAGAGGTATTTCATTTCCGTGGGTATAATTAATGATGAAATAGCTCCTTGCCACGTGACTTAAGAAGGGACTTTGGAAATTGATCCAAAAGTACAACTTAGCTAGAGTCTAAATAAGAAATAACCGATCAGAAAGGATTTAGGATTGGAATTGATAGATGCGTGTTTAGGATTTAGAATTTAGGGATTAGATAGAGGAAGAGATAAGAAAGTGTATAGGCTCGTCAAGTAAAATAGAAGAGGATCTGAGATCTAAACTTAGTGAAGTATATTAAAGACAAGAAAATCATGGAATTGATGGAAAAGACATGTATGCATAAAAGAGAGCTAAATCTAAGATTAGAAACATATACAACTTATCAATATTTATAATTATAAATACAACAAAATAATGATAAAATGATATATTTTTTATATAATCATCATCAACTACGAATAACATTTTTGTATATTAAAGACAAGAAAATCATGGAATTGATGGAAAAGACGTGTATGCATAAAAGAGAGCTAAATCTAAGATTAGAAACATATACAACTTATCAATTTTTATATTATAAATACAACAAAATAATGATAAAATGATATATTTTTTATATTATCATCATCAACTACTAATATAATTTTTGTTAATTCAAATATTTGAGCTTTTTGGAATACACAATTAAATTCATATGTTGGGATATGAAAAGAATAGGGTAGATATTATTGAAAAATGATTGTGAGTAGATACATGAGCCCATATCATTTGCGACATACATGACACATACATGTAAGACTCAGCAAATACTTATCAATTTACAGAGAACATAATAAAACAGCTCTCTTTTCTAAAATATGTTTAAAAAGAACATTCAGAATAGGCGTTGAGAAGTTTGTCAGAGAATTATAAGTTTATGATTGTATGAGCATGTGACAAATACTTTACTGTGGACAAATTAACTGATGTAGGGCTTTCATCCCTTCCGTTCCACCTTCGTGTGTTGATCGAACTTGTGTTTGATAATTACAGGTGTATGCTGTCTACTTCAAGTGCAATAAGAAGCTACTTCGTGAATATCCAAATCTGTTTAATTACACCAAAGATATTTTCCAAATACCCGGCATGAGCAGTACGGTCAACATGGAACACATCAAAAAGCATTACTATAGGAGCCATCCTAGCATCAATCCTTTCGGAATCATTCCCCAGGGTCCAAATATCGACTATTCCTCTCCACATGATCGAGAGAAGTTCTCTAAGTAGGATTGGTACATAATCTGAGCATGCATTTCAAACTCCGGTCATCCTTTTCACTCCTTAAGGTTCAAGGAGTATGTGGAGTTGCTACAAGTACTGATGCTGCCTCAATCTTCGGCTTTTTATAGCGTAAATTATCTTATAAGAGATGTAAGTTGTGCTAGTTTTTTTTTTTGTAAAGTAAGGAGTTGAAACAAGAGCTTCTGCTATATTTACCGTTTGTTCATCCTAAAAGTGTTTCTGTAGAGTTGCTACAACTTGTAGTTTCTCATGAATCTCAGTTTTATGCAGTGTTGAATTATC</genome_strand>
        <mrna_strand>TTTTGCAAAGAAGCAAGAGCCTTATGATGAG...............................................................................................................GCTGTGCAAAAAGTATACAAAGCTTTGGACAAATGTGAGGAGATACTGAGCAAGCAGAGATACATATGTGGAGATCAAGTGACTGAAGCAGATATTCGCTTGTTTGTCACCCTGATTAGGTTTGATGAG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGTATGCTGTCTACTTCAAGTGCAATAAGAAGCTACTTCGTGAATATCCAAATCTGTTTAATTACACCAAAGATATTTTCCAAATACCCGGCATGAGCAGTACGGTCAACATGGAACACATCAAAAAGCATTACTATAGGAGCCATCCTAGCATCAATCCTTTCGGAATCATTCCCCAGGGTCCAAATATCGACTATTCCTCTCCACATGATCGAGAGAAGTTCTCTAAGTAGGATTGGTACATAATCTGAGCATGCATTTCAAACTCCGGTCATCCTTTTCACTCCTTAAGGTTCAAGGAGTATGTGGAGTTGCTACAAGTACTGATGCTGCCTCAATCTTCGGCTTTTTATAGCGTAAATTATCTTATAAGAGATGTAAGTTGTGCTAGTTTTTTTTTTTGTAAAGTAAGGAGTTGAAACAAGAGCTTCTGCTATATTTACCGTTTGTTCATCCTAAAAGTGTTTCTGTAGAGTTGCTACAACTTGTAGTTTCTCATGAATCTCAGTTTTATGCAGTGTTGAATTATC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0320M09-0CleD/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E540614" ref_strand="+" ref_description="SGN-E540614 [TUS-60-P18](-)">
      <seq>aaagaagcaagagccttatgatgaggctgtgcaaaaagtatacaaagcttgggacaaatgtgaggagatactgagcaagcagagatacatatgtggagatcaagtgactgaagcagatattcgcttgtttgtcaccctgattaggtttgatgaggtgtatgctgtctacttcaagtgcaataagaagctacttcgtgaatatccaaatttgtttaattacaccaaagatattttccaaatacccggcatgagcagtacggtcaacatggaacacatcaaaaagcattactataggagccatcctagcatcaatcctttcggaatcattccccagggtccaaatatcgactattcctctccacatgatcgagagaagttctctaagtaggattggtacataatctgagcatgcatttcaaactccggtcatccttttcactccttaaggttcaaggagtatgtggagttgctacaagtactgatgctgcctcaattttcggctttttatagcgtaaattatcttataagagatgtaagttgtgctagtttttttttttgtaaagtaaggagttgaaacaagagcttctgctatatttaccgtttgttcatcctaaaagtgtttctgtagagttgctacaacttgtagtttctcatgaatctcagttttatgcagtgttgaattatctcctaaataagagatgtaagttgtgctagtttttttgtaaaagcaaggaggtaatgaatgcgttacgtgtttgctgctaaaaaaaaaaaaaaaaaaaaaaaaaaaaaatgaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0320M09-0CleD/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0320M09.4" temp_strand="+" temp_description="C02HBa0320M09.4  AC215438.3 htgs_phase:3 submitted_to_sgn_as:C02HBa0320M09 sequenced_by:kribb upload_account_name:korea">
        <position start="88632" stop="92768"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="88932" g_stop="88956" g_length="25"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="25" r_length="25" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="88957" i_stop="89067" i_length="111">
            <donor d_prob="0.000" d_score="0.00"/>
            <acceptor a_prob="0.997" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="89068" g_stop="89196" g_length="129"/>
          <reference_exon_boundary r_type="cDNA" r_start="26" r_stop="154" r_length="129" r_score="0.992"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="89197" i_stop="91858" i_length="2662">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.991" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="91859" g_stop="92469" g_length="611"/>
          <reference_exon_boundary r_type="cDNA" r_start="155" r_stop="765" r_length="611" r_score="0.995"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="766" polyA_stop="794"/>
      <MATCH_line gen_id="C02HBa0320M09.4" gen_strand="+" ref_id="SGN-E540614" ref_strand="+">
        <total_alignment_score>0.995</total_alignment_score>
        <cumulative_length_of_scored_exons>765</cumulative_length_of_scored_exons>
        <coverage percentage="0.959" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0320M09.4" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E540614" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="88932" e_stop="88956"/>
          <exon e_start="89068" e_stop="89196"/>
          <exon e_start="91859" e_stop="92469"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAGAAGCAAGAGCCTTATGATGAGGTAATCAGAAATAGACAACAGAACTCGAAGCCGTTTGCTAAACATCTTAAACCTTATAGAACTTCAATCAGTTCTATCTGAGGAAAAGTGATTACCTTTTTGTCCTTGCAGGCTGTGCAAAAAGTATACAAAGCTTTGGACAAATGTGAGGAGATACTGAGCAAGCAGAGATACATATGTGGAGATCAAGTGACTGAAGCAGATATTCGCTTGTTTGTCACCCTGATTAGGTTTGATGAGGTTAGTGAATGTTCCCTTATGGTCAAAACTAAATTATTGTCTTAGAAATATTATCAAAGTAGGCACCCAAGGGTGTGGGTTGAATGTAGTGGGTTGAAAATCATGAGGTCATAAGTTCAAATCACTGAGGGGGCAAAACTGCTTGGTGATTTCTTCTTATTTGTCCGGGCTTTGGTGGACATAGTTTACTCGGTACCTATGGTGGGAGATAGCAGGTAATCTTTGGAATTAAAAAACAACAATTATACCAAAAGGGAAAATTCTGAGGGGATATTTAGGAAGGAGATTTGTGTCTGGTATTATCACTACATTGTCATTGGTGATCAATTGGCTTGAGCTATGTAGCTTAATCCGATATGTTAGAAGAGACAGCAACACTACAGAAAGATGGAGTAATAATCATTCCAAATATAACCTTGAGTTGTCTGAAAATGTTAAAGCTTCATATACTTCTTTTCCTACAACTTCAAAATTTATTGATGTGGCAGTCTTTCCCTTATGGTGTGATACTTCAGTACTTACCCTCCGTGAAGTGCATTGATAATTAATCACTAAAACCAGTAATCTTCTCATCACTGCAACTTATAATCTGTGAAAGAGTAGCCAGATGTTTGTCAAGTAGTCACGCTAGGTGTTCGAAAACAGGCCTTCAAATAGTATCGTCCTTTTGTCTGAAAATGTACCGCCATTTCCTAAGAATTGTGTCTTTCATTCACTTGGAGAGTACCCAAGATTTACAAAGATGACTCTGTCACCACTTTAATTACCTAGTTAGTGGGAGGGTGATTCTTACGTCAAGAAAAGAATTAGTAGCTGTAATGTAATTATTAATCTTCAATAGAACAATTCTTTCCACCAAAAAGGAAACACAGAATAAAAGATTGCAATTTATTAGTCCTCTGAATTTATTTATGCTCATGGACTGTGAATGCTAAAGCTTTGGATTCCTCCTTTCTACTGCAACTTCCAAATTTGTTAGTGTGGAAGTCATCCCCTGCATAGTGAGAAAATCACATCTGTACATACTGTTAAATTGACAATTACTTGCTACTGGTCAATTAGAAGGTGGAACTTAGTAGTACCAGGCTGTAAGCGAGAACATATGCACTGCAAGCATAGGCTCTATAATAATGATGAGAGTGAAGTGAAATTAGACGGAATTGTTGTGTCTATATGCTGAGAATTCAGAGATCTAGGCTCGGTGTTTTAAAAGAATAGCATGCTATAGGGAGATTGAAATAGAAATTGATACAAGAGTGTTTTGTATGATCGGAAAATATCTAACACAGTGAAAGACAAGTTTTACAAAATGGTGCTGAGACAATGAGACTAGCTTTATTTTTATGTTTTAGTTATTTCCTGATGAGTTACATTAGAATGAATATTAGACCCTTAAGAGCTAACATATTCACAAGATCATCCAATGGTTATGGGTAAAATATAATTATGGATATTGTCTTGATAATTAGCTCTCTCCATGTTAGCGAAAACTAAAAATCAAGAAAGCTATTGAATTACAAATTAAATAAACTTAATAGGAAAAAAAAACTCAAAGTATGAAATTACTTTTCATTGATAAATGCTTGGAGAAACCTTGAGGCATTTGGGAGATTATAAAGGAAAACATTTCAGGTGTGGAAGTGGGGAAAACGTGAAGAGGTATTTCATTTCCGTGGGTATAATTAATGATGAAATAGCTCCTTGCCACGTGACTTAAGAAGGGACTTTGGAAATTGATCCAAAAGTACAACTTAGCTAGAGTCTAAATAAGAAATAACCGATCAGAAAGGATTTAGGATTGGAATTGATAGATGCGTGTTTAGGATTTAGAATTTAGGGATTAGATAGAGGAAGAGATAAGAAAGTGTATAGGCTCGTCAAGTAAAATAGAAGAGGATCTGAGATCTAAACTTAGTGAAGTATATTAAAGACAAGAAAATCATGGAATTGATGGAAAAGACATGTATGCATAAAAGAGAGCTAAATCTAAGATTAGAAACATATACAACTTATCAATATTTATAATTATAAATACAACAAAATAATGATAAAATGATATATTTTTTATATAATCATCATCAACTACGAATAACATTTTTGTATATTAAAGACAAGAAAATCATGGAATTGATGGAAAAGACGTGTATGCATAAAAGAGAGCTAAATCTAAGATTAGAAACATATACAACTTATCAATTTTTATATTATAAATACAACAAAATAATGATAAAATGATATATTTTTTATATTATCATCATCAACTACTAATATAATTTTTGTTAATTCAAATATTTGAGCTTTTTGGAATACACAATTAAATTCATATGTTGGGATATGAAAAGAATAGGGTAGATATTATTGAAAAATGATTGTGAGTAGATACATGAGCCCATATCATTTGCGACATACATGACACATACATGTAAGACTCAGCAAATACTTATCAATTTACAGAGAACATAATAAAACAGCTCTCTTTTCTAAAATATGTTTAAAAAGAACATTCAGAATAGGCGTTGAGAAGTTTGTCAGAGAATTATAAGTTTATGATTGTATGAGCATGTGACAAATACTTTACTGTGGACAAATTAACTGATGTAGGGCTTTCATCCCTTCCGTTCCACCTTCGTGTGTTGATCGAACTTGTGTTTGATAATTACAGGTGTATGCTGTCTACTTCAAGTGCAATAAGAAGCTACTTCGTGAATATCCAAATCTGTTTAATTACACCAAAGATATTTTCCAAATACCCGGCATGAGCAGTACGGTCAACATGGAACACATCAAAAAGCATTACTATAGGAGCCATCCTAGCATCAATCCTTTCGGAATCATTCCCCAGGGTCCAAATATCGACTATTCCTCTCCACATGATCGAGAGAAGTTCTCTAAGTAGGATTGGTACATAATCTGAGCATGCATTTCAAACTCCGGTCATCCTTTTCACTCCTTAAGGTTCAAGGAGTATGTGGAGTTGCTACAAGTACTGATGCTGCCTCAATCTTCGGCTTTTTATAGCGTAAATTATCTTATAAGAGATGTAAGTTGTGCTAGTTTTTTTTTTTGTAAAGTAAGGAGTTGAAACAAGAGCTTCTGCTATATTTACCGTTTGTTCATCCTAAAAGTGTTTCTGTAGAGTTGCTACAACTTGTAGTTTCTCATGAATCTCAGTTTTATGCAGTGTTGAATTATCTCCTAAATAAGAGATGTAAGTTGTGCTAGTTTTTTTGTAAAAGCAAGGAGGTAATGAATGCGTTACGTGTTTGCTGCTAC</genome_strand>
        <mrna_strand>AAAGAAGCAAGAGCCTTATGATGAG...............................................................................................................GCTGTGCAAAAAGTATACAAAGCTTGGGACAAATGTGAGGAGATACTGAGCAAGCAGAGATACATATGTGGAGATCAAGTGACTGAAGCAGATATTCGCTTGTTTGTCACCCTGATTAGGTTTGATGAG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGTATGCTGTCTACTTCAAGTGCAATAAGAAGCTACTTCGTGAATATCCAAATTTGTTTAATTACACCAAAGATATTTTCCAAATACCCGGCATGAGCAGTACGGTCAACATGGAACACATCAAAAAGCATTACTATAGGAGCCATCCTAGCATCAATCCTTTCGGAATCATTCCCCAGGGTCCAAATATCGACTATTCCTCTCCACATGATCGAGAGAAGTTCTCTAAGTAGGATTGGTACATAATCTGAGCATGCATTTCAAACTCCGGTCATCCTTTTCACTCCTTAAGGTTCAAGGAGTATGTGGAGTTGCTACAAGTACTGATGCTGCCTCAATTTTCGGCTTTTTATAGCGTAAATTATCTTATAAGAGATGTAAGTTGTGCTAGTTTTTTTTTTTGTAAAGTAAGGAGTTGAAACAAGAGCTTCTGCTATATTTACCGTTTGTTCATCCTAAAAGTGTTTCTGTAGAGTTGCTACAACTTGTAGTTTCTCATGAATCTCAGTTTTATGCAGTGTTGAATTATCTCCTAAATAAGAGATGTAAGTTGTGCTAGTTTTTTTGTAAAAGCAAGGAGGTAATGAATGCGTTACGTGTTTGCTGCTAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0320M09-0CleD/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E545718" ref_strand="+" ref_description="SGN-E545718 [TUS-68-L10](-)">
      <seq>tatgatgaggctgtgcaaaaagtatacaaagctttggacaaatgtgaggagatactgagcaagcagagatacatatgtggagatcaagtgactgaagcagatattcgcttgtttgtcaccctgattaggtttgatgaggtgtatgctgtctacttcaagtgcaataagaagctacttcgtgaatatccaaatctgtttaattacaccaaagatattttccaaatacccggcatgagcagtacggtcaacatggaacacatcaaaaagcattactataggagccatcctagcatcaatcctttcggaatcattccccagggtccaaatatcgactattcctctccacatgatcgagagaagttctctaagtaggattggtacataatctgagcatgcatttcaaactccggtcatccttttcactccttaaggttcaaggagtatgtggagttgctacaagtactgatgctgcctcaatcttcggctttttatagcgtaaattatcttataagagatgtaagttgtgctagtttttttttttgtaaagtaaggagttgaaacaagagcttctgctatatttaccgtttgttcatcctaaaagtgtttctgtagagttgctacaacttgtagtttctcatgaatctcagttttatgcagtgttgaattatctcctaaataagagatgtaagttgtgctagtttttttgtaaaagcaaggaggtaatgaatgcgttacgtgtttgctgctacgtttacagtgaaaaaaaaaaaaaaaaaactcgaggggggcccg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0320M09-0CleD/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0320M09.4" temp_strand="+" temp_description="C02HBa0320M09.4  AC215438.3 htgs_phase:3 submitted_to_sgn_as:C02HBa0320M09 sequenced_by:kribb upload_account_name:korea">
        <position start="88763" stop="92781"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="89068" g_stop="89196" g_length="129"/>
          <reference_exon_boundary r_type="cDNA" r_start="10" r_stop="138" r_length="129" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="89197" i_stop="91858" i_length="2662">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.991" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="91859" g_stop="92476" g_length="618"/>
          <reference_exon_boundary r_type="cDNA" r_start="139" r_stop="756" r_length="618" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="760" polyA_stop="778"/>
      <MATCH_line gen_id="C02HBa0320M09.4" gen_strand="+" ref_id="SGN-E545718" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>747</cumulative_length_of_scored_exons>
        <coverage percentage="0.943" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0320M09.4" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E545718" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="89068" e_stop="89196"/>
          <exon e_start="91859" e_stop="92476"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCTGTGCAAAAAGTATACAAAGCTTTGGACAAATGTGAGGAGATACTGAGCAAGCAGAGATACATATGTGGAGATCAAGTGACTGAAGCAGATATTCGCTTGTTTGTCACCCTGATTAGGTTTGATGAGGTTAGTGAATGTTCCCTTATGGTCAAAACTAAATTATTGTCTTAGAAATATTATCAAAGTAGGCACCCAAGGGTGTGGGTTGAATGTAGTGGGTTGAAAATCATGAGGTCATAAGTTCAAATCACTGAGGGGGCAAAACTGCTTGGTGATTTCTTCTTATTTGTCCGGGCTTTGGTGGACATAGTTTACTCGGTACCTATGGTGGGAGATAGCAGGTAATCTTTGGAATTAAAAAACAACAATTATACCAAAAGGGAAAATTCTGAGGGGATATTTAGGAAGGAGATTTGTGTCTGGTATTATCACTACATTGTCATTGGTGATCAATTGGCTTGAGCTATGTAGCTTAATCCGATATGTTAGAAGAGACAGCAACACTACAGAAAGATGGAGTAATAATCATTCCAAATATAACCTTGAGTTGTCTGAAAATGTTAAAGCTTCATATACTTCTTTTCCTACAACTTCAAAATTTATTGATGTGGCAGTCTTTCCCTTATGGTGTGATACTTCAGTACTTACCCTCCGTGAAGTGCATTGATAATTAATCACTAAAACCAGTAATCTTCTCATCACTGCAACTTATAATCTGTGAAAGAGTAGCCAGATGTTTGTCAAGTAGTCACGCTAGGTGTTCGAAAACAGGCCTTCAAATAGTATCGTCCTTTTGTCTGAAAATGTACCGCCATTTCCTAAGAATTGTGTCTTTCATTCACTTGGAGAGTACCCAAGATTTACAAAGATGACTCTGTCACCACTTTAATTACCTAGTTAGTGGGAGGGTGATTCTTACGTCAAGAAAAGAATTAGTAGCTGTAATGTAATTATTAATCTTCAATAGAACAATTCTTTCCACCAAAAAGGAAACACAGAATAAAAGATTGCAATTTATTAGTCCTCTGAATTTATTTATGCTCATGGACTGTGAATGCTAAAGCTTTGGATTCCTCCTTTCTACTGCAACTTCCAAATTTGTTAGTGTGGAAGTCATCCCCTGCATAGTGAGAAAATCACATCTGTACATACTGTTAAATTGACAATTACTTGCTACTGGTCAATTAGAAGGTGGAACTTAGTAGTACCAGGCTGTAAGCGAGAACATATGCACTGCAAGCATAGGCTCTATAATAATGATGAGAGTGAAGTGAAATTAGACGGAATTGTTGTGTCTATATGCTGAGAATTCAGAGATCTAGGCTCGGTGTTTTAAAAGAATAGCATGCTATAGGGAGATTGAAATAGAAATTGATACAAGAGTGTTTTGTATGATCGGAAAATATCTAACACAGTGAAAGACAAGTTTTACAAAATGGTGCTGAGACAATGAGACTAGCTTTATTTTTATGTTTTAGTTATTTCCTGATGAGTTACATTAGAATGAATATTAGACCCTTAAGAGCTAACATATTCACAAGATCATCCAATGGTTATGGGTAAAATATAATTATGGATATTGTCTTGATAATTAGCTCTCTCCATGTTAGCGAAAACTAAAAATCAAGAAAGCTATTGAATTACAAATTAAATAAACTTAATAGGAAAAAAAAACTCAAAGTATGAAATTACTTTTCATTGATAAATGCTTGGAGAAACCTTGAGGCATTTGGGAGATTATAAAGGAAAACATTTCAGGTGTGGAAGTGGGGAAAACGTGAAGAGGTATTTCATTTCCGTGGGTATAATTAATGATGAAATAGCTCCTTGCCACGTGACTTAAGAAGGGACTTTGGAAATTGATCCAAAAGTACAACTTAGCTAGAGTCTAAATAAGAAATAACCGATCAGAAAGGATTTAGGATTGGAATTGATAGATGCGTGTTTAGGATTTAGAATTTAGGGATTAGATAGAGGAAGAGATAAGAAAGTGTATAGGCTCGTCAAGTAAAATAGAAGAGGATCTGAGATCTAAACTTAGTGAAGTATATTAAAGACAAGAAAATCATGGAATTGATGGAAAAGACATGTATGCATAAAAGAGAGCTAAATCTAAGATTAGAAACATATACAACTTATCAATATTTATAATTATAAATACAACAAAATAATGATAAAATGATATATTTTTTATATAATCATCATCAACTACGAATAACATTTTTGTATATTAAAGACAAGAAAATCATGGAATTGATGGAAAAGACGTGTATGCATAAAAGAGAGCTAAATCTAAGATTAGAAACATATACAACTTATCAATTTTTATATTATAAATACAACAAAATAATGATAAAATGATATATTTTTTATATTATCATCATCAACTACTAATATAATTTTTGTTAATTCAAATATTTGAGCTTTTTGGAATACACAATTAAATTCATATGTTGGGATATGAAAAGAATAGGGTAGATATTATTGAAAAATGATTGTGAGTAGATACATGAGCCCATATCATTTGCGACATACATGACACATACATGTAAGACTCAGCAAATACTTATCAATTTACAGAGAACATAATAAAACAGCTCTCTTTTCTAAAATATGTTTAAAAAGAACATTCAGAATAGGCGTTGAGAAGTTTGTCAGAGAATTATAAGTTTATGATTGTATGAGCATGTGACAAATACTTTACTGTGGACAAATTAACTGATGTAGGGCTTTCATCCCTTCCGTTCCACCTTCGTGTGTTGATCGAACTTGTGTTTGATAATTACAGGTGTATGCTGTCTACTTCAAGTGCAATAAGAAGCTACTTCGTGAATATCCAAATCTGTTTAATTACACCAAAGATATTTTCCAAATACCCGGCATGAGCAGTACGGTCAACATGGAACACATCAAAAAGCATTACTATAGGAGCCATCCTAGCATCAATCCTTTCGGAATCATTCCCCAGGGTCCAAATATCGACTATTCCTCTCCACATGATCGAGAGAAGTTCTCTAAGTAGGATTGGTACATAATCTGAGCATGCATTTCAAACTCCGGTCATCCTTTTCACTCCTTAAGGTTCAAGGAGTATGTGGAGTTGCTACAAGTACTGATGCTGCCTCAATCTTCGGCTTTTTATAGCGTAAATTATCTTATAAGAGATGTAAGTTGTGCTAGTTTTTTTTTTTGTAAAGTAAGGAGTTGAAACAAGAGCTTCTGCTATATTTACCGTTTGTTCATCCTAAAAGTGTTTCTGTAGAGTTGCTACAACTTGTAGTTTCTCATGAATCTCAGTTTTATGCAGTGTTGAATTATCTCCTAAATAAGAGATGTAAGTTGTGCTAGTTTTTTTGTAAAAGCAAGGAGGTAATGAATGCGTTACGTGTTTGCTGCTACGTTTACA</genome_strand>
        <mrna_strand>GCTGTGCAAAAAGTATACAAAGCTTTGGACAAATGTGAGGAGATACTGAGCAAGCAGAGATACATATGTGGAGATCAAGTGACTGAAGCAGATATTCGCTTGTTTGTCACCCTGATTAGGTTTGATGAG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGTATGCTGTCTACTTCAAGTGCAATAAGAAGCTACTTCGTGAATATCCAAATCTGTTTAATTACACCAAAGATATTTTCCAAATACCCGGCATGAGCAGTACGGTCAACATGGAACACATCAAAAAGCATTACTATAGGAGCCATCCTAGCATCAATCCTTTCGGAATCATTCCCCAGGGTCCAAATATCGACTATTCCTCTCCACATGATCGAGAGAAGTTCTCTAAGTAGGATTGGTACATAATCTGAGCATGCATTTCAAACTCCGGTCATCCTTTTCACTCCTTAAGGTTCAAGGAGTATGTGGAGTTGCTACAAGTACTGATGCTGCCTCAATCTTCGGCTTTTTATAGCGTAAATTATCTTATAAGAGATGTAAGTTGTGCTAGTTTTTTTTTTTGTAAAGTAAGGAGTTGAAACAAGAGCTTCTGCTATATTTACCGTTTGTTCATCCTAAAAGTGTTTCTGTAGAGTTGCTACAACTTGTAGTTTCTCATGAATCTCAGTTTTATGCAGTGTTGAATTATCTCCTAAATAAGAGATGTAAGTTGTGCTAGTTTTTTTGTAAAAGCAAGGAGGTAATGAATGCGTTACGTGTTTGCTGCTACGTTTACA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0320M09-0CleD/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E241526" ref_strand="+" ref_description="SGN-E241526 [cLED-28-D22]">
      <seq>acttttcattgataaatgcttggagaaaccttgaggcatttgggagattataaaggaaaacatttcaggtgtggaagtggggaaaacgtgaagaggtatttcatttccgtgggtataattaatgatgaaatagctccttgccacgtgacttaagaagggactttggaaattgatccaaaagtacaacttagctagagtctaaataagaaataaccgatcagaaaggatttaggattggaattgatagatgcgtgcttaggatttagaatttagggattagatagaggaagagataagaaagtgtataggctcgtcaagtaaaatagaagaggatctgagatctaaacttagtgaagtatattaaagaccagaaaatcatggaattgatggaaaagacatgtatgcataacagagagctaaatctaagattagaaacatatacaacttatcaatatttataattataaatacaacaaaataatgatgaaatgatatattttttatataatcatcatc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0320M09-0CleD/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0320M09.4" temp_strand="+" temp_description="C02HBa0320M09.4  AC215438.3 htgs_phase:3 submitted_to_sgn_as:C02HBa0320M09 sequenced_by:kribb upload_account_name:korea">
        <position start="90461" stop="91576"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="90761" g_stop="91276" g_length="516"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="516" r_length="516" r_score="0.992"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0320M09.4" gen_strand="+" ref_id="SGN-E241526" ref_strand="+">
        <total_alignment_score>0.992</total_alignment_score>
        <cumulative_length_of_scored_exons>516</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0320M09.4" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E241526" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="90761" e_stop="91276"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACTTTTCATTGATAAATGCTTGGAGAAACCTTGAGGCATTTGGGAGATTATAAAGGAAAACATTTCAGGTGTGGAAGTGGGGAAAACGTGAAGAGGTATTTCATTTCCGTGGGTATAATTAATGATGAAATAGCTCCTTGCCACGTGACTTAAGAAGGGACTTTGGAAATTGATCCAAAAGTACAACTTAGCTAGAGTCTAAATAAGAAATAACCGATCAGAAAGGATTTAGGATTGGAATTGATAGATGCGTGTTTAGGATTTAGAATTTAGGGATTAGATAGAGGAAGAGATAAGAAAGTGTATAGGCTCGTCAAGTAAAATAGAAGAGGATCTGAGATCTAAACTTAGTGAAGTATATTAAAGACAAGAAAATCATGGAATTGATGGAAAAGACATGTATGCATAAAAGAGAGCTAAATCTAAGATTAGAAACATATACAACTTATCAATATTTATAATTATAAATACAACAAAATAATGATAAAATGATATATTTTTTATATAATCATCATC</genome_strand>
        <mrna_strand>ACTTTTCATTGATAAATGCTTGGAGAAACCTTGAGGCATTTGGGAGATTATAAAGGAAAACATTTCAGGTGTGGAAGTGGGGAAAACGTGAAGAGGTATTTCATTTCCGTGGGTATAATTAATGATGAAATAGCTCCTTGCCACGTGACTTAAGAAGGGACTTTGGAAATTGATCCAAAAGTACAACTTAGCTAGAGTCTAAATAAGAAATAACCGATCAGAAAGGATTTAGGATTGGAATTGATAGATGCGTGCTTAGGATTTAGAATTTAGGGATTAGATAGAGGAAGAGATAAGAAAGTGTATAGGCTCGTCAAGTAAAATAGAAGAGGATCTGAGATCTAAACTTAGTGAAGTATATTAAAGACCAGAAAATCATGGAATTGATGGAAAAGACATGTATGCATAACAGAGAGCTAAATCTAAGATTAGAAACATATACAACTTATCAATATTTATAATTATAAATACAACAAAATAATGATGAAATGATATATTTTTTATATAATCATCATC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0320M09-0CleD/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E350484" ref_strand="+" ref_description="SGN-E350484 [cTOS-5-E9]">
      <seq>aagctacttcgtgaatatccaaatctgtttaattacaccaaagatattttccaaatacccggcatgagcagtacggtcaacatggaacacatcaaaaagcattactataggagccatcctagcatcaatcctttcggaatcattccccagggtccaaatatcgactattcctctccacatgatcgagagaagttctctaagtaggattggtacataatctgagcatgcatttcaaactccggtcatccttttcactccttaaggttcaaggagtatgtggagttgctacaagtactgatgctgcctcaatcttcggctttttatagcgtaaattatcttataagagatgtaagttgtgctagtttttttttttgtaaagtaaggagttgaaacaagagcttctgctatatttaccgtttgttcatcctaaaagtgtttctgtagagttgctacaacttgtagtttctcatgaatctcagttttatgcagtgttgaattatctcctaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0320M09-0CleD/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0320M09.4" temp_strand="+" temp_description="C02HBa0320M09.4  AC215438.3 htgs_phase:3 submitted_to_sgn_as:C02HBa0320M09 sequenced_by:kribb upload_account_name:korea">
        <position start="91589" stop="92703"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="91889" g_stop="92405" g_length="517"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="517" r_length="517" r_score="0.990"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0320M09.4" gen_strand="+" ref_id="SGN-E350484" ref_strand="+">
        <total_alignment_score>0.990</total_alignment_score>
        <cumulative_length_of_scored_exons>517</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0320M09.4" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E350484" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="91889" e_stop="92405"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAGCTACTTCGTGAATATCCAAATCTGTTTAATTACACCAAAGATATTTTCCAAATACCCGGCATGAGCAGTACGGTCAACATGGAACACATCAAAAAGCATTACTATAGGAGCCATCCTAGCATCAATCCTTTCGGAATCATTCCCCAGGGTCCAAATATCGACTATTCCTCTCCACATGATCGAGAGAAGTTCTCTAAGTAGGATTGGTACATAATCTGAGCATGCATTTCAAACTCCGGTCATCCTTTTCACTCCTTAAGGTTCAAGGAGTATGTGGAGTTGCTACAAGTACTGATGCTGCCTCAATCTTCGGCTTTTTATAGCGTAAATTATCTTATAAGAGATGTAAGTTGTGCTAGTTTTTTTTTTTGTAAAGTAAGGAGTTGAAACAAGAGCTTCTGCTATATTTACCGTTTGTTCATCCTAAAAGTGTTTCTGTAGAGTTGCTACAACTTGTAGTTTCTCATGAATCTCAGTTTTATGCAGTGTTGAATTATCTCCTAAATAAGAGATG</genome_strand>
        <mrna_strand>AAGCTACTTCGTGAATATCCAAATCTGTTTAATTACACCAAAGATATTTTCCAAATACCCGGCATGAGCAGTACGGTCAACATGGAACACATCAAAAAGCATTACTATAGGAGCCATCCTAGCATCAATCCTTTCGGAATCATTCCCCAGGGTCCAAATATCGACTATTCCTCTCCACATGATCGAGAGAAGTTCTCTAAGTAGGATTGGTACATAATCTGAGCATGCATTTCAAACTCCGGTCATCCTTTTCACTCCTTAAGGTTCAAGGAGTATGTGGAGTTGCTACAAGTACTGATGCTGCCTCAATCTTCGGCTTTTTATAGCGTAAATTATCTTATAAGAGATGTAAGTTGTGCTAGTTTTTTTTTTTGTAAAGTAAGGAGTTGAAACAAGAGCTTCTGCTATATTTACCGTTTGTTCATCCTAAAAGTGTTTCTGTAGAGTTGCTACAACTTGTAGTTTCTCATGAATCTCAGTTTTATGCAGTGTTGAATTATCTCCTAAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0320M09-0CleD/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E245284" ref_strand="-" ref_description="SGN-E245284 [cLEF-44-H16]">
      <seq>atcaaaaagcattactataggagccatcctagcatcaatcctttcggaatcattccccagggtccaaatatcgactattcctctccacatgatcgagagaagttctctaagtaggattggtacataatctgagcatgcatttcaaactccggtcatccttttcactccttaaggttcaaggagtatgtggagttgctacaagtactgatgctgcctcaatcttcggctttttatagcgtaaattatcttataagagatgtaagttgtgctagtttttttttttgtaaagtaaggagttgaaacaagagcttctgctatattcaccgtttgttcatcctaaaagtgtttctgtagagttgctacaacttgtagtttctcatgaatctcagttttatgcagtgttgaattatctcctaaataagagatgtaagttgtgctagtttttttgtaaaagcaaggaggtaatgaatgcgttacgtgtttgctgctaaaaaaaaaaaaaaaaaaaaaannnctgagactagttctc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0320M09-0CleD/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0320M09.4" temp_strand="+" temp_description="C02HBa0320M09.4  AC215438.3 htgs_phase:3 submitted_to_sgn_as:C02HBa0320M09 sequenced_by:kribb upload_account_name:korea">
        <position start="91679" stop="92768"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="91979" g_stop="92469" g_length="491"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="491" r_length="491" r_score="0.996"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="492" polyA_stop="512"/>
      <MATCH_line gen_id="C02HBa0320M09.4" gen_strand="+" ref_id="SGN-E245284" ref_strand="-">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>491</cumulative_length_of_scored_exons>
        <coverage percentage="0.928" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0320M09.4" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E245284" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="91979" e_stop="92469"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATCAAAAAGCATTACTATAGGAGCCATCCTAGCATCAATCCTTTCGGAATCATTCCCCAGGGTCCAAATATCGACTATTCCTCTCCACATGATCGAGAGAAGTTCTCTAAGTAGGATTGGTACATAATCTGAGCATGCATTTCAAACTCCGGTCATCCTTTTCACTCCTTAAGGTTCAAGGAGTATGTGGAGTTGCTACAAGTACTGATGCTGCCTCAATCTTCGGCTTTTTATAGCGTAAATTATCTTATAAGAGATGTAAGTTGTGCTAGTTTTTTTTTTTGTAAAGTAAGGAGTTGAAACAAGAGCTTCTGCTATATTTACCGTTTGTTCATCCTAAAAGTGTTTCTGTAGAGTTGCTACAACTTGTAGTTTCTCATGAATCTCAGTTTTATGCAGTGTTGAATTATCTCCTAAATAAGAGATGTAAGTTGTGCTAGTTTTTTTGTAAAAGCAAGGAGGTAATGAATGCGTTACGTGTTTGCTGCTAC</genome_strand>
        <mrna_strand>ATCAAAAAGCATTACTATAGGAGCCATCCTAGCATCAATCCTTTCGGAATCATTCCCCAGGGTCCAAATATCGACTATTCCTCTCCACATGATCGAGAGAAGTTCTCTAAGTAGGATTGGTACATAATCTGAGCATGCATTTCAAACTCCGGTCATCCTTTTCACTCCTTAAGGTTCAAGGAGTATGTGGAGTTGCTACAAGTACTGATGCTGCCTCAATCTTCGGCTTTTTATAGCGTAAATTATCTTATAAGAGATGTAAGTTGTGCTAGTTTTTTTTTTTGTAAAGTAAGGAGTTGAAACAAGAGCTTCTGCTATATTCACCGTTTGTTCATCCTAAAAGTGTTTCTGTAGAGTTGCTACAACTTGTAGTTTCTCATGAATCTCAGTTTTATGCAGTGTTGAATTATCTCCTAAATAAGAGATGTAAGTTGTGCTAGTTTTTTTGTAAAAGCAAGGAGGTAATGAATGCGTTACGTGTTTGCTGCTAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0320M09-0CleD/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E218029" ref_strand="+" ref_description="SGN-E218029 [cLEL-23-N8](-)">
      <seq>aatcattccccagggtccaaatatcgactattcctctccacatgatcgagagaagttctctaagtaggattggtacataatctgagcatgcatttcaaactccggtcatccttttcactccttaaggttcaaggagtatgtggagttgctacaagtactgatgctgcctcaatcttcggctttttatagcgtaaattatcttataagagatgtaagttgtgctagtttttttttttgtaaagtaaggagttgaaacaagagcttctgctatatttaccgtttgttcatcctaaaagtgtttctgtagagttgctacaacttgtagtttctcatgaatctcagttttatgcagtgttgaattatctcctaaataagagatgtaagttgtgctaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0320M09-0CleD/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0320M09.4" temp_strand="+" temp_description="C02HBa0320M09.4  AC215438.3 htgs_phase:3 submitted_to_sgn_as:C02HBa0320M09 sequenced_by:kribb upload_account_name:korea">
        <position start="91726" stop="92717"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="92026" g_stop="92417" g_length="392"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="392" r_length="392" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="393" polyA_stop="410"/>
      <MATCH_line gen_id="C02HBa0320M09.4" gen_strand="+" ref_id="SGN-E218029" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>392</cumulative_length_of_scored_exons>
        <coverage percentage="0.956" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0320M09.4" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E218029" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="92026" e_stop="92417"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AATCATTCCCCAGGGTCCAAATATCGACTATTCCTCTCCACATGATCGAGAGAAGTTCTCTAAGTAGGATTGGTACATAATCTGAGCATGCATTTCAAACTCCGGTCATCCTTTTCACTCCTTAAGGTTCAAGGAGTATGTGGAGTTGCTACAAGTACTGATGCTGCCTCAATCTTCGGCTTTTTATAGCGTAAATTATCTTATAAGAGATGTAAGTTGTGCTAGTTTTTTTTTTTGTAAAGTAAGGAGTTGAAACAAGAGCTTCTGCTATATTTACCGTTTGTTCATCCTAAAAGTGTTTCTGTAGAGTTGCTACAACTTGTAGTTTCTCATGAATCTCAGTTTTATGCAGTGTTGAATTATCTCCTAAATAAGAGATGTAAGTTGTGCTA</genome_strand>
        <mrna_strand>AATCATTCCCCAGGGTCCAAATATCGACTATTCCTCTCCACATGATCGAGAGAAGTTCTCTAAGTAGGATTGGTACATAATCTGAGCATGCATTTCAAACTCCGGTCATCCTTTTCACTCCTTAAGGTTCAAGGAGTATGTGGAGTTGCTACAAGTACTGATGCTGCCTCAATCTTCGGCTTTTTATAGCGTAAATTATCTTATAAGAGATGTAAGTTGTGCTAGTTTTTTTTTTTGTAAAGTAAGGAGTTGAAACAAGAGCTTCTGCTATATTTACCGTTTGTTCATCCTAAAAGTGTTTCTGTAGAGTTGCTACAACTTGTAGTTTCTCATGAATCTCAGTTTTATGCAGTGTTGAATTATCTCCTAAATAAGAGATGTAAGTTGTGCTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0320M09-0CleD/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E745161" ref_strand="+" ref_description="SGN-E745161 [GI|47105967]">
      <seq>gaggcacgcgcgcacaagcacagacaaatagagcattggattgtgattctactgcagatttaggataatggggttattcaattgagtgaagaaagtttcttggattaatttggtagataagtgtggagaggggccttctttttgaagtctttactagggcaattttttctggggatttttcagggacttcattgttgctgacaggtgcagcttatcgattactttggtctgtacagtgttataaggtgccttggtatggatatggttgaattagggggggcttttgcagctaagcagatgttttaatgaatgaccagacagaaaagctcaaaatatggaaagactggatttaggattcaatcactctggatctgtgcaatcagaggagtcagccctggatttggagagaaattattttaaccaacttcctttgtcaagtccaccaccactgcaagcctttgcatcaggttgtcaggtcgctgagagcaatgctgcctacttctcatggccttgtcgcttagatgctgctgaggatcgggccaattactttggtaaccttcagaagggggttttacctgaaaccctgggaggacatcccacgggacagcaagctacaacattgcttgaagttatgaccattagagcatttcatagcaaaaacttgcgtcgctttagtcttggtacagcaatcggatttcgtatccggcgaggtgctttgacagagataccagctattcttgtctttgttgccagaaaagttcacaggcaatggctcaaccttgtccaatgtctaccggcttttcttgagggaccaggtggtgtttggtgtgatgttgatgttgtggagttctcatactttggggcaccggcagcaactccaaaggaacagctatatactgaacttgttgatggtttacggggaagtgatccatgcattggttctggttcccaggttgctagtcaggaaacatatggaaccttgggtgcgattgttaaaagtcggacaggtatcaggcaggtcggtttccttaccaatcgtcatgtagctgttgacttggattatccaagccagaaaatgtttcatcctctgccacctagcctggggcctggggtgtatttaggtgctgtagagagggctacatccttcataacagatgatctttggtatggcatatttgctggtacaaatccagaaacgtttgttcgagctgatggagcatttattccatttgcagaagatttcaacatgttgaatgtaacgacgtctgtgaaaggaataggagacataggtgatgtcaataaaatagacttacagtctcctgtcggtagtgtcattggtaggcaagtggtgaaagttggaaggagctctggtcttacgactggaaacattatggcctatgccctggagtataatgatgaaaaaggaatttgtttctttacagattttctagttgttggtgagaaccaacagacatttgatcttgaaggtgacagtggtagcctcattctcttgactagccctgagggggagaagccacgacctataggaataatttgggggggaactgccaatcgaggtcgtttaaaattgagagttggccaacctcctgagaattggactagtggggttgacttggggcgtctccttgatcttcttgaacttgatctcattacatccaacgagagtctccaagttgcattgcaagatcaaattattgcatcagctgcgggtattggttcggctgttggagggtcatcaccagccgagcggattcaactgaaagctgaagtaaactttgagcccatcaatttaaacgtccgacaagatcccatcgatgatgaatctgacgaaggggtagttccaccacttgagcataaacacttccacattcaggatggaaataaagcaactccttgcgtcgagcatcagtttatcccaagtgtctctgggattcaacatggaaatggggaactaaaaagactctctgtggtgggaggatcagatgatgagatgtatgtttctttgcagttaggggagcagcgcgaaccaaagagaaggaaacaatgatgagtcgtctccgtttgccaaaataaaaaaaagagtgaattgcttcattttatctgcttcatttgtctttggaaggctcagtcatgcattgagctgggaggagttggagtattatttaagcctcccaccagtatgagtattattattgttattattattctttcacttttaattcatgaagctacatatagaggttagatattaagttgtacaatatgtaagaaatgtgtttagaagagaattgtatctatttgttgtatcatttctgtgaagctatcatacaaaatttatgaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0320M09-0CleD/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0320M09.4" temp_strand="+" temp_description="C02HBa0320M09.4  AC215438.3 htgs_phase:3 submitted_to_sgn_as:C02HBa0320M09 sequenced_by:kribb upload_account_name:korea">
        <position start="102755" stop="111358"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="103054" g_stop="103257" g_length="204"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="204" r_length="204" r_score="0.995"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="103258" i_stop="103707" i_length="450">
            <donor d_prob="0.906" d_score="1.00"/>
            <acceptor a_prob="0.949" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="103708" g_stop="103767" g_length="60"/>
          <reference_exon_boundary r_type="cDNA" r_start="205" r_stop="264" r_length="60" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="103768" i_stop="103881" i_length="114">
            <donor d_prob="0.477" d_score="1.00"/>
            <acceptor a_prob="0.671" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="103882" g_stop="104425" g_length="544"/>
          <reference_exon_boundary r_type="cDNA" r_start="265" r_stop="808" r_length="544" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="104426" i_stop="104812" i_length="387">
            <donor d_prob="0.915" d_score="1.00"/>
            <acceptor a_prob="0.986" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="104813" g_stop="104956" g_length="144"/>
          <reference_exon_boundary r_type="cDNA" r_start="809" r_stop="952" r_length="144" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="104957" i_stop="109075" i_length="4119">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.990" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="109076" g_stop="109316" g_length="241"/>
          <reference_exon_boundary r_type="cDNA" r_start="953" r_stop="1193" r_length="241" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="109317" i_stop="109426" i_length="110">
            <donor d_prob="0.977" d_score="1.00"/>
            <acceptor a_prob="0.984" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="109427" g_stop="109927" g_length="501"/>
          <reference_exon_boundary r_type="cDNA" r_start="1194" r_stop="1694" r_length="501" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="109928" i_stop="110390" i_length="463">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.971" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="110391" g_stop="111058" g_length="668"/>
          <reference_exon_boundary r_type="cDNA" r_start="1695" r_stop="2362" r_length="668" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="2363" polyA_stop="2377"/>
      <MATCH_line gen_id="C02HBa0320M09.4" gen_strand="+" ref_id="SGN-E745161" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>2362</cumulative_length_of_scored_exons>
        <coverage percentage="0.994" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0320M09.4" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E745161" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="103054" e_stop="103257"/>
          <exon e_start="103708" e_stop="103767"/>
          <exon e_start="103882" e_stop="104425"/>
          <exon e_start="104813" e_stop="104956"/>
          <exon e_start="109076" e_stop="109316"/>
          <exon e_start="109427" e_stop="109927"/>
          <exon e_start="110391" e_stop="111058"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TAGGCACGCGCGCACAAGCACAGACAAATAGAGCATTGGATTGTGATTCTACTGCAGATTTAGGATAATGGGGTTATTCAATTGAGTGAAGAAAGTTTCTTGGATTAATTTGGTAGATAAGTGTGGAGAGGGGCCTTCTTTTTGAAGTCTTTACTAGGGCAATTTTTTCTGGGGATTTTTCAGGGACTTCATTGTTGCTGACAGGTGAGGTGAGGTGAGGTTTCTTTTGAATTTGATTGTAAAGATTCAATCTTTATAGGTTTTCTTGACATGGGGTTTGCTTAGAACAATTCTTGAATTAACTTGACCTTCTCCTGCTCTATGTTGACTTGTTTCTTGGTGCTAAAGAGTTTTTACAGTTCAGTTGTTTTATCTTTCATGTGTGTTAAGATATTCTCTTTGTTTATGAATTTATTTTTCTGTATTTATTAGCTTAGTTGTGGTGGTACATACTGAGGTGAGAACAAAATAAAGGGTGCATTTATTTCTATATATAATATGACATATTGCTTACAAAGCTGCTTGTTGGTTTCTGATTGTTATCTTTGCTTTCTATGGAAATGCACAAGTTGCTTTCTTTCAGTAGGTTTTGGGATATTTTGAGTTTTCTTTATTGTACTTGCTAATGCTACTTCATGTTAATGTAAATTCCAGGTGCAGCTTATCGATTACTTTGGTCTGTACAGTGTTATAAGGTGCCTTGGTATGGATATGGTAAGGTTAATTATGTTGTTGTCAAACTAAAATGCTTTTTTATTCGTATTTTTTTTTTTTTTGGTTATTTGAATCAATGGAATTAGTACTTCATATAGAACATTTCCTTTCAAGGTTGAATTAGGGGGGGCTTTTGCAGCTAAGCAGATGTTTTAATGAATGACCAGACAGAAAAGCTCAAAATATGGAAAGACTGGATTTAGGATTCAATCACTCTGGATCTGTGCAATCAGAGGAGTCAGCCCTGGATTTGGAGAGAAATTATTTTAACCAACTTCCTTTGTCAAGTCCACCACCACTGCAAGCCTTTGCATCAGGTTGTCAGGTCGCTGAGAGCAATGCTGCCTACTTCTCATGGCCTTGTCGCTTAGATGCTGCTGAGGATCGGGCCAATTACTTTGGTAACCTTCAGAAGGGGGTTTTACCTGAAACCCTGGGAGGACATCCCACGGGACAGCAAGCTACAACATTGCTTGAAGTTATGACCATTAGAGCATTTCATAGCAAAAACTTGCGTCGCTTTAGTCTTGGTACAGCAATCGGATTTCGTATCCGGCGAGGTGCTTTGACAGAGATACCAGCTATTCTTGTCTTTGTTGCCAGAAAAGTTCACAGGCAATGGCTCAACCTTGTCCAATGTCTACCGGCTTTTCTTGAGGTTTAATCTTGTTGGAACCCCTGTACTTGCATTTAGCATAAACAGTTTTAGTGTAATGATTTTATTGCTTAGGTGGCACTTATGACTTCAGGCTTTTCTATCAATTTTTTCCTTTGTCTTTATGTGTTTATTCTGCTAACAGTCCTTGTTCTTCATGGAACATGGTTAACTAGTAAAAGTCTTTCACCAAACGGCAAAAATTCCCATGTCTTAATTGATATAGGATCTATTGCATTAACATGCACTAAAGTTGAGTAGATTCACTAACTTCTTTTTGTTTCTTTTTATAACGGTGGTGGCCGGGCCAGCTATGGTTCATTGACTTTTCTGGAGTCTTAACTGTTCTGCCAATACTATTGGGCTTGAGAATCTTTTGTAATTGGGCAGGGACCAGGTGGTGTTTGGTGTGATGTTGATGTTGTGGAGTTCTCATACTTTGGGGCACCGGCAGCAACTCCAAAGGAACAGCTATATACTGAACTTGTTGATGGTTTACGGGGAAGTGATCCATGCATTGGTTCTGGTTCCCAGGTAATTGTCTCTTCTTGATCAGAATGTCCTTTCATTACTATGCATCAAGATAGTGTAAAAAAATTACAAGTATTTAGCACTAAGCTTCTAGAAATTCTGTCAACTACTGTAGGAACGGTTCCTTTACACCAAAGTGAAAGTGAAACATTAAACTCTTAATTCTCTTATGTCTATTTCTCAATTCCATCAGATATTCTTTTGTTCCTTTTCCCCTCGTCCGAAAATGCATGTGCAGGCTAGTTGCGCAAACTACGCCATCATCTTCTTTTTGATAGTAATAAGGTATTGTATTAAAAGTGAACAAGAACTACATAAGTGCTTCAAACATAGTAGAAGTTGTGCAATTCCCCAATCTTATCTAACTGGGCATATGTATCCTGTACAAAGCTAGTTTGCACCAAAAAAAGCTAGCAACATAATGGCTCTAAACTTGAGACTAAGAGTGTTTGTTCTTTTGCCTTCAAAAATTCTGTTTTTTCCTTCTAACTAGACAGTCAACCAGACAACTTGGGATATAGTATTCCAAAATTTGAGGCTTTTTTATGTGATCTGATTTGGTCCTTGGCTCCCAGGCCCCAGCACATTAGATATTATTGAGTAGAGACAGGCATAGTCTGACAAATGCCAAGTAAAGTAAAAATTGAATTCCACGGCTGTGATGTGGTCTTGCAATGGAGAAAAAGGTGATTGGCTGCTGGTCAGAAATAAGAACACAAGGAATACACTGATCTCTATAGCACTACTGCTAATTCGCTACAAAGGATTTGATGATTCATGTCCTCCCTGTTCCTTTTGGACATGCAACACCTATTCAACTTTAGAAAGCCTATTCTCTTCAAGTTGTGTGCTGTTGGAGTAGTATACCGTACGGCACTCTTACGGTCTTACCAAGAAAGCTACTTTTGGGAGCCTTATTCCTCAAATACACTCCCACAATGCTTCCTACCTTGTTGTGTGATAGATATCCCGGAAAGCATTCTACCAACAGTTTTCTCTACATCATCCTGTCATTGTACTTTACAATGTCAACGTTGTTATCATTCTGTAGAAGATCTCCATCTCATCCCATTCCCAATCTTGGATAGGTTTCCTAAGGATATGTCCATGGTCTATCCTTATGACATCCATTCAGTGTTGCCTGTCGGTTAGGGTGCTTTTAACTTTTATGTAGTTCTTTATCTTAGTGTGGTGAATTTGATTCATTTGGATGTTTGTTATGCAGAAATTAATGAACTTATAGATTTCATGATCTATGTAAATGGTTGGTCTAAAGAAATAATCAGTTGTTTTATTAAAAAACTGAACTCTTGTTTGATTAAGACATCAGCTGTAAGAATCTTTTTGCTAATGTTGGGTGAACTTAGGATTTATGATCCCTGATAAGAGAATTTCAGGATCATGAAATCCTTTTCTATCACATGGGAAGTGTAGTAGCACATTTTTTTTTCTCCAAGTAATTACAAATTCTGTATTTATCAGCATGAAGAAACTAATGGAGGGGACTAATCTATTCTGAAAATGGTGAAATCCGGAAATGAAATTTAAGTGAGCCTGAAATTGTAAATATCGTATTAAGGGCATCAATTGCAGGATTTTTTCTCTATATATTTCCAGAGTATACAGTTTTTATCGACAATCTGGTATCGTTAATTTACCAATATTACAAAAGCATCAGTTTTCTATCTCCATATATGAATCTTCCAGAACCTTCATGAACTGTGAGTACCAAACGCTGCAACACCAAAGGTTGATTTGTTGAATCAAATCTATCTGATTATTACTCTCTTTCTTCAGTTACTACCTACACAGAATTGCCAACTACCATCAATTTCAATGTTACTCTACAGCCTATTCAGTACCCATCTCACCTTACTTTTTGAAACGTCAATCACCTCCGCAAGGTCATCTCTCCTTTTTTCAGGTGGCACAGTTTCATCACCAGTGGTTTAATAGCCAAAAAGTGGTTTCCTAGTGAGTAATTTACAAATATTTTACATAATAAAGAGATTGTTCTAATGTGTTTTATCAAATTGAAACAGTAAGATGTAAACTAGGAAAATATTATTTATTCTGGTGCAAGCTTTGAGGAAGTATTGTTCAAGTTTTCCATGTCTGTCAGCAAGAGAACCCCATTTTCCCACCTTTTGTTTGTTTCTTTGTTTGTACTTTTCTTATCTTTATTGAAAACATATTAGAATATTGTTGTGGTTACCTTGTATCAAGGGATGATACTGTTACTAGATAGAGGATTTTCTAGTTCATGAATCCTGACATTCATGTGTAGTTGGTTATTGGCTAAATGTTCTGACATTCCTTCTATCTTCATTAATAAGGGTCATATCTTTGACGAATCAAATACTCCCTTTGTTTCAAAAGAATGACCTCATTTCCTTTTTAGTCTATTTCAAAAAGAATGACCTCTTTCTTTTTTTGGTAAACATTTTAATTTCATCTTGCCATGTGGCATGTTTAAAGCCACAAGATTAAAGGGTAATTTAGTACATTTGACATAACTTTAATTTAGAACCACAAGATTCAAAAGTCTTCTTTATTTTCTACAACTTTGTGCCAAGTCAAACCAGGTCACTCTTATTGAAACATAGGGAGTATTATTTTATTTCAGTTCCTGACTCAACAAGAAATAAAGGCGCATATCTATTCTAGAAAGAATCTCCTCCTCCTTTCTATAATGCCGGCTAGACATACCAAATTAAATCTTTTCAAATGAATAGAGGTGTAGATCATGAAATTGTACATTTACGTAGCACCTAGGCTGTCCCCATGCTAGATGTTATCTGCGCTGGAGCAACACCAACAACATACCAGTGTGATCTCATTAGTGAGGTCCGGGAGATAGAATGCACACAAACCTTACCCCTACCTCATATAGATAGAGAGACTACCGAATAGTGGAAGAGTGGAGAAGAGAAAGGAATTCCTCAAAACTTGTTTGGTGCGACATTTCAACTGCCAAATTAGCAAAGGTTGAAGCGAGTGCTTGGTTATGAGAGTTTTTTGTAGTGGTGGTAGGTGCCCTACTTCGGCAAAGCTCTGTGGCAGTTTGTTGCCGTCAAAGGAAGCTAATCCTGTCACGGATATGTCACCAGTGGATAGGTAACACCTTCTTAATGCTTAACCAATGGTCATTTAAAGCTGGTTGCTGCATTGTGAGAAGAAAAAATAATGTATTGGTGGTGAGTCTGGTGGGTTTGCCAATCCATCAGTGATGTCTGAATATGTTTTGACAAATTGGTGATGCTACAGAGGCTATTTGGATATTGATCTTAACATGCCAAGGTCAAAGTCTGGTCGAAGACAGGTGAAACACGCCGAATTGGCGAATTCTCTACTATACTGATCAAAGATGGATATTATTCTTACTAGGTTTTACTGGAAAAGAGAACTGTACTCATAACAAATCCTAGCAAGGCAATCATAGAGATGGAACACAAAAACAAATAGAAAGTTGGGCGTCACAAACACAAAAATATGCAATTGATAGAGAACACACCAAAGATAACGTTGGCTTTAACTCTCTGTTTCTTAAGAGACACAGAGTTACTGCTCTTAGAAGCTAGACTTATGATTGTTAACTATCAAGAGAGACTTTTATGGATTGGCACTCTCGTTGTGGATTTGATCTTCATTAGTTGCTATATTCCATTTTATGTGTGACTTTCCTTTGTAGTATGCCCCTAAAAGTATGACGTCCTCTTTTTTTGGAAGTATCTTATTTTAGCATCCTCTTTTTACCCTTAATGACTAAATGACATTACTTGTTGAGATCCACTAATTATTAAAGTTCATTATAAAAGAATGGACCTAAAATTTATTACCTAGAGATAAAATTGCGAGTAATTGTTAACCGAGGTACTATTATTGATTGGAGATTTTATAAGCTTAACAGTAGGACAAAAGTAACTTCTGAAGTTAGTTATGATGTTTAAAAGGTAATTCATTGTTAAGCAAAAAAAATTCCTCTTTAAGAATGTTGACACGAAGCCCATGTTGAGAGAGAAGTGATTACTTTTCTTGATCCTGCAGAATGATTGACTTAATTGATTTGGCTTCGCATAACATTGTATTCTGAAGTAACCTTTTCTCTTTCATCTGTCCTAGGTTGCTAGTCAGGAAACATATGGAACCTTGGGTGCGATTGTTAAAAGTCGGACAGGTATCAGGCAGGTCGGTTTCCTTACCAATCGTCATGTAGCTGTTGACTTGGATTATCCAAGCCAGAAAATGTTTCATCCTCTGCCACCTAGCCTGGGGCCTGGGGTGTATTTAGGTGCTGTAGAGAGGGCTACATCCTTCATAACAGATGATCTTTGGTATGGCATATTTGCTGGTACAAATCCAGGTAATTTAAACAGTGTTTATTGTATCATTTTTGCCCCATTGAACAATAGTAGTATTTCAAATTGGATCCTGACACCCATGTACTCTGTTTGTGATGTCGTAATCTTGCAGAAACGTTTGTTCGAGCTGATGGAGCATTTATTCCATTTGCAGAAGATTTCAACATGTTGAATGTAACGACGTCTGTGAAAGGAATAGGAGACATAGGTGATGTCAATAAAATAGACTTACAGTCTCCTGTCGGTAGTGTCATTGGTAGGCAAGTGGTGAAAGTTGGAAGGAGCTCTGGTCTTACGACTGGAAACATTATGGCCTATGCCCTGGAGTATAATGATGAAAAAGGAATTTGTTTCTTTACAGATTTTCTAGTTGTTGGTGAGAACCAACAGACATTTGATCTTGAAGGTGACAGTGGTAGCCTCATTCTCTTGACTAGCCCTGAGGGGGAGAAGCCACGACCTATAGGAATAATTTGGGGGGGAACTGCCAATCGAGGTCGTTTAAAATTGAGAGTTGGCCAACCTCCTGAGAATTGGACTAGTGGGGTTGACTTGGGGCGTCTCCTTGATCTTCTTGAACTTGATCTCATTACATCCAACGAGAGTCTCCAAGGTTGGTATCTCTCAGCATCTAATTCTCCTTATTCTTTGAAATTTTAAATATCGTCATGAAATTCTGGATTTTGACATTATATGACATGAAATGCAACCCCTAACCTTACAACGAAAAGGGTTATACGTGGAGTGTGGTTCTTGGAGGGGAAGGACTCACCAATATGTGGTTACTTTTTGCATGGTCATGTTAAATACCAGCTTAAATTATAAATGCCTTGGTTAGTATAAGATTATTAGCTCTCTAAAAGGTGTCCCCAATATGGATATAGCAGTTTGGTCTTTGAGGAAATATTTGTGAAATGTGGCGGAACAAAAAGATTGTAGATATAAGCCCAAAAACTTAGTATTCAGTCTAATAAAAACTTTGATTTCTAATTTTTGCCTTCAAATTTTCTTGATCTCTATCATTTACTATTTCATATCTGTAGTCCCTACTTCTGTATTCACTTCCTCTAAATCAGTTGCATTGCAAGATCAAATTATTGCATCAGCTGCGGGTATTGGTTCGGCTGTTGGAGGGTCATCACCAGCCGAGCGGATTCAACTGAAAGCTGAAGTAAACTTTGAGCCCATCAATTTAAACGTCCGACAAGATCCCATCGATGATGAATCTGACGAAGGGGTAGTTCCACCACTTGAGCATAAACACTTCCACATTCAGGATGGAAATAAAGCAACTCCTTGCGTCGAGCATCAGTTTATCCCAAGTGTCTCTGGGATTCAACATGGAAATGGGGAACTAAAAAGACTCTCTGTGGTGGGAGGATCAGATGATGAGATGTATGTTTCTTTGCAGTTAGGGGAGCAGCGCGAACCAAAGAGAAGGAAACAATGATGAGTCGTCTCCGTTTGCCAAAATAAAAAAAAGAGTGAATTGCTTCATTTTATCTGCTTCATTTGTCTTTGGAAGGCTCAGTCATGCATTGAGCTGGGAGGAGTTGGAGTATTATTTAAGCCTCCCACCAGTATGAGTATTATTATTGTTATTATTATTCTTTCACTTTTAATTCATGAAGCTACATATAGAGGTTAGATATTAAGTTGTACAATATGTAAGAAATGTGTTTAGAAGAGAATTGTATCTATTTGTTGTATCATTTCTGTGAAGCTATCATACAAAATTTATGAA</genome_strand>
        <mrna_strand>GAGGCACGCGCGCACAAGCACAGACAAATAGAGCATTGGATTGTGATTCTACTGCAGATTTAGGATAATGGGGTTATTCAATTGAGTGAAGAAAGTTTCTTGGATTAATTTGGTAGATAAGTGTGGAGAGGGGCCTTCTTTTTGAAGTCTTTACTAGGGCAATTTTTTCTGGGGATTTTTCAGGGACTTCATTGTTGCTGACAG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGCAGCTTATCGATTACTTTGGTCTGTACAGTGTTATAAGGTGCCTTGGTATGGATATG..................................................................................................................GTTGAATTAGGGGGGGCTTTTGCAGCTAAGCAGATGTTTTAATGAATGACCAGACAGAAAAGCTCAAAATATGGAAAGACTGGATTTAGGATTCAATCACTCTGGATCTGTGCAATCAGAGGAGTCAGCCCTGGATTTGGAGAGAAATTATTTTAACCAACTTCCTTTGTCAAGTCCACCACCACTGCAAGCCTTTGCATCAGGTTGTCAGGTCGCTGAGAGCAATGCTGCCTACTTCTCATGGCCTTGTCGCTTAGATGCTGCTGAGGATCGGGCCAATTACTTTGGTAACCTTCAGAAGGGGGTTTTACCTGAAACCCTGGGAGGACATCCCACGGGACAGCAAGCTACAACATTGCTTGAAGTTATGACCATTAGAGCATTTCATAGCAAAAACTTGCGTCGCTTTAGTCTTGGTACAGCAATCGGATTTCGTATCCGGCGAGGTGCTTTGACAGAGATACCAGCTATTCTTGTCTTTGTTGCCAGAAAAGTTCACAGGCAATGGCTCAACCTTGTCCAATGTCTACCGGCTTTTCTTGAG...................................................................................................................................................................................................................................................................................................................................................................................................GGACCAGGTGGTGTTTGGTGTGATGTTGATGTTGTGGAGTTCTCATACTTTGGGGCACCGGCAGCAACTCCAAAGGAACAGCTATATACTGAACTTGTTGATGGTTTACGGGGAAGTGATCCATGCATTGGTTCTGGTTCCCAG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTGCTAGTCAGGAAACATATGGAACCTTGGGTGCGATTGTTAAAAGTCGGACAGGTATCAGGCAGGTCGGTTTCCTTACCAATCGTCATGTAGCTGTTGACTTGGATTATCCAAGCCAGAAAATGTTTCATCCTCTGCCACCTAGCCTGGGGCCTGGGGTGTATTTAGGTGCTGTAGAGAGGGCTACATCCTTCATAACAGATGATCTTTGGTATGGCATATTTGCTGGTACAAATCCAG..............................................................................................................AAACGTTTGTTCGAGCTGATGGAGCATTTATTCCATTTGCAGAAGATTTCAACATGTTGAATGTAACGACGTCTGTGAAAGGAATAGGAGACATAGGTGATGTCAATAAAATAGACTTACAGTCTCCTGTCGGTAGTGTCATTGGTAGGCAAGTGGTGAAAGTTGGAAGGAGCTCTGGTCTTACGACTGGAAACATTATGGCCTATGCCCTGGAGTATAATGATGAAAAAGGAATTTGTTTCTTTACAGATTTTCTAGTTGTTGGTGAGAACCAACAGACATTTGATCTTGAAGGTGACAGTGGTAGCCTCATTCTCTTGACTAGCCCTGAGGGGGAGAAGCCACGACCTATAGGAATAATTTGGGGGGGAACTGCCAATCGAGGTCGTTTAAAATTGAGAGTTGGCCAACCTCCTGAGAATTGGACTAGTGGGGTTGACTTGGGGCGTCTCCTTGATCTTCTTGAACTTGATCTCATTACATCCAACGAGAGTCTCCAAG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTGCATTGCAAGATCAAATTATTGCATCAGCTGCGGGTATTGGTTCGGCTGTTGGAGGGTCATCACCAGCCGAGCGGATTCAACTGAAAGCTGAAGTAAACTTTGAGCCCATCAATTTAAACGTCCGACAAGATCCCATCGATGATGAATCTGACGAAGGGGTAGTTCCACCACTTGAGCATAAACACTTCCACATTCAGGATGGAAATAAAGCAACTCCTTGCGTCGAGCATCAGTTTATCCCAAGTGTCTCTGGGATTCAACATGGAAATGGGGAACTAAAAAGACTCTCTGTGGTGGGAGGATCAGATGATGAGATGTATGTTTCTTTGCAGTTAGGGGAGCAGCGCGAACCAAAGAGAAGGAAACAATGATGAGTCGTCTCCGTTTGCCAAAATAAAAAAAAGAGTGAATTGCTTCATTTTATCTGCTTCATTTGTCTTTGGAAGGCTCAGTCATGCATTGAGCTGGGAGGAGTTGGAGTATTATTTAAGCCTCCCACCAGTATGAGTATTATTATTGTTATTATTATTCTTTCACTTTTAATTCATGAAGCTACATATAGAGGTTAGATATTAAGTTGTACAATATGTAAGAAATGTGTTTAGAAGAGAATTGTATCTATTTGTTGTATCATTTCTGTGAAGCTATCATACAAAATTTATGAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0320M09-0CleD/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E712159" ref_strand="+" ref_description="SGN-E712159 [FB04AC10]">
      <seq>gagaaaggtttggatgtaacttctctcagagaggagtgggaaattgtttcagaaagccaggatggcaaagagaaggcggatagcggaaagacaaaggtgggttctatatctgtctctcatgttggagatgacaatactacgtgggaagaagcccatgcgactcttattgtccaccctaaaagtgaaggtaagcaacatgtagagttgaatgccatgtctgtttctgcaagggcttgaaacttatattaccatatggtcaaaggggctttattgttttatatccatctgtctattcctcctgatttcttctgtatatagaaagtaattgtgctcctgaacagaaccatgtatgtatgtatatatatgtgcatattaacgttatcaagtatgtgatgtggatcaatcaaataagaaatttgatttcttgttcaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaatttggggggggggggcgggccccctttccccccaaaaggggggtaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0320M09-0CleD/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0320M09.4" temp_strand="-" temp_description="C02HBa0320M09.4  AC215438.3 htgs_phase:3 submitted_to_sgn_as:C02HBa0320M09 sequenced_by:kribb upload_account_name:korea">
        <position start="112313" stop="3472"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="112013" g_stop="111588" g_length="426"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="426" r_length="426" r_score="0.998"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="111587" i_stop="108995" i_length="2593">
            <donor d_prob="0.000" d_score="1.00"/>
            <acceptor a_prob="0.367" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="108994" g_stop="108984" g_length="11"/>
          <reference_exon_boundary r_type="cDNA" r_start="427" r_stop="437" r_length="11" r_score="0.818"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="108983" i_stop="107389" i_length="1595">
            <donor d_prob="0.615" d_score="0.00"/>
            <acceptor a_prob="0.000" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="107388" g_stop="107375" g_length="14"/>
          <reference_exon_boundary r_type="cDNA" r_start="438" r_stop="451" r_length="14" r_score="0.786"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="107374" i_stop="107132" i_length="243">
            <donor d_prob="0.203" d_score="0.00"/>
            <acceptor a_prob="0.443" a_score="0.56"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="107131" g_stop="107053" g_length="79"/>
          <reference_exon_boundary r_type="cDNA" r_start="452" r_stop="530" r_length="79" r_score="0.506"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0320M09.4" gen_strand="-" ref_id="SGN-E712159" ref_strand="+">
        <total_alignment_score>0.921</total_alignment_score>
        <cumulative_length_of_scored_exons>530</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0320M09.4" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E712159" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="112013" e_stop="111588"/>
          <exon e_start="108994" e_stop="108984"/>
          <exon e_start="107388" e_stop="107375"/>
          <exon e_start="107131" e_stop="107053"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAGAAAGGTTTGGATGTAACTTCTCTCAGAGAGGAGTGGGAAATTGTTTCAGAAAGCCAGGATGGCAAAGAGAATGCGGATAGCGGAAAGACAAAGGTGGGTTCTATATCTGTCTCTCATGTTGGAGATGACAATACTACGTGGGAAGAAGCCCATGCGACTCTTATTGTCCACCCTAAAAGTGAAGGTAAGCAACATGTAGAGTTGAATGCCATGTCTGTTTCTGCAAGGGCTTGAAACTTATATTACCATATGGTCAAAGGGGCTTTATTGTTTTATATCCATCTGTCTATTCCTCCTGATTTCTTCTGTATATAGAAAGTAATTGTGCTCCTGAACAGAACCATGTATGTATGTATATATATGTGCATATTAACGTTATCAAGTATGTGATGTGGATCAATCAAATAAGAAATTTGATTTCTTGTTCATCACTTGTTACTTTATATGTCAATGTCAAATGTGAAACCACAGCAAAAATCAACAATGGAGGAGTTCAAAACTCCATGTGAAAATGAGAAATAGAACGAATGAGTATCGAGGATAAGCCAGGTGAAACGAGCAAACACATTGCTGTAAGGCGCGAAATGGAGCCTTCAATGAAGACTACCACTACCAAAGACTTGTTTGCAACTCTCTGAAAAGGTTGCAAAGATTCTAAAGTAGTGTTTTAAATCAATTAAACTAGTGTTGTTGCACCAATCAGAAAGTGATTGGTATTTGAATTTGGAACAGTTCTATTTTGAAAATTTTGATAAAAACATTATTTTTTTAATTAAAACTACCTCCCCTCATTTTTATGTAGAAGCTAAGGTGCATATACAGTTTCTGCTAAATACATGCAGTTACTCAAAATATTGTTATGGTATTACATAAAAAGTTGCACAGTTTCTGGTCTTCTTGAGTGAAAGAGACAGTTCCTGATCATAGCAACAGTTTTGGGGGCTTCCTCCACTTCATAAATTTTGTATGATAGCTTCACAGAAATGATACAACAAATAGATACAATTCTCTTCTAAACACATTTCTTACATATTGTACAACTTAATATCTAACCTCTATATGTAGCTTCATGAATTAAAAGTGAAAGAATAATAATAACAATAATAATACTCATACTGGTGGGAGGCTTAAATAATACTCCAACTCCTCCCAGCTCAATGCATGACTGAGCCTTCCAAAGACAAATGAAGCAGATAAAATGAAGCAATTCACTCTTTTTTTTATTTTGGCAAACGGAGACGACTCATCATTGTTTCCTTCTCTTTGGTTCGCGCTGCTCCCCTAACTGCAAAGAAACATACATCTCATCATCTGATCCTCCCACCACAGAGAGTCTTTTTAGTTCCCCATTTCCATGTTGAATCCCAGAGACACTTGGGATAAACTGATGCTCGACGCAAGGAGTTGCTTTATTTCCATCCTGAATGTGGAAGTGTTTATGCTCAAGTGGTGGAACTACCCCTTCGTCAGATTCATCATCGATGGGATCTTGTCGGACGTTTAAATTGATGGGCTCAAAGTTTACTTCAGCTTTCAGTTGAATCCGCTCGGCTGGTGATGACCCTCCAACAGCCGAACCAATACCCGCAGCTGATGCAATAATTTGATCTTGCAATGCAACTGATTTAGAGGAAGTGAATACAGAAGTAGGGACTACAGATATGAAATAGTAAATGATAGAGATCAAGAAAATTTGAAGGCAAAAATTAGAAATCAAAGTTTTTATTAGACTGAATACTAAGTTTTTGGGCTTATATCTACAATCTTTTTGTTCCGCCACATTTCACAAATATTTCCTCAAAGACCAAACTGCTATATCCATATTGGGGACACCTTTTAGAGAGCTAATAATCTTATACTAACCAAGGCATTTATAATTTAAGCTGGTATTTAACATGACCATGCAAAAAGTAACCACATATTGGTGAGTCCTTCCCCTCCAAGAACCACACTCCACGTATAACCCTTTTCGTTGTAAGGTTAGGGGTTGCATTTCATGTCATATAATGTCAAAATCCAGAATTTCATGACGATATTTAAAATTTCAAAGAATAAGGAGAATTAGATGCTGAGAGATACCAACCTTGGAGACTCTCGTTGGATGTAATGAGATCAAGTTCAAGAAGATCAAGGAGACGCCCCAAGTCAACCCCACTAGTCCAATTCTCAGGAGGTTGGCCAACTCTCAATTTTAAACGACCTCGATTGGCAGTTCCCCCCCAAATTATTCCTATAGGTCGTGGCTTCTCCCCCTCAGGGCTAGTCAAGAGAATGAGGCTACCACTGTCACCTTCAAGATCAAATGTCTGTTGGTTCTCACCAACAACTAGAAAATCTGTAAAGAAACAAATTCCTTTTTCATCATTATACTCCAGGGCATAGGCCATAATGTTTCCAGTCGTAAGACCAGAGCTCCTTCCAACTTTCACCACTTGCCTACCAATGACACTACCGACAGGAGACTGTAAGTCTATTTTATTGACATCACCTATGTCTCCTATTCCTTTCACAGACGTCGTTACATTCAACATGTTGAAATCTTCTGCAAATGGAATAAATGCTCCATCAGCTCGAACAAACGTTTCTGCAAGATTACGACATCACAAACAGAGTACATGGGTGTCAGGATCCAATTTGAAATACTACTATTGTTCAATGGGGCAAAAATGATACAATAAACACTGTTTAAATTACCTGGATTTGTACCAGCAAATATGCCATACCAAAGATCATCTGTTATGAAGGATGTAGCCCTCTCTACAGCACCTAAATACACCCCAGGCCCCAGGCTAGGTGGCAGAGGATGAAACATTTTCTGGCTTGGATAATCCAAGTCAACAGCTACATGACGATTGGTAAGGAAACCGACCTGCCTGATACCTGTCCGACTTTTAACAATCGCACCCAAGGTTCCATATGTTTCCTGACTAGCAACCTAGGACAGATGAAAGAGAAAAGGTTACTTCAGAATACAATGTTATGCGAAGCCAAATCAATTAAGTCAATCATTCTGCAGGATCAAGAAAAGTAATCACTTCTCTCTCAACATGGGCTTCGTGTCAACATTCTTAAAGAGGAATTTTTTTTGCTTAACAATGAATTACCTTTTAAACATCATAACTAACTTCAGAAGTTACTTTTGTCCTACTGTTAAGCTTATAAAATCTCCAATCAATAATAGTACCTCGGTTAACAATTACTCGCAATTTTATCTCTAGGTAATAAATTTTAGGTCCATTCTTTTATAATGAACTTTAATAATTAGTGGATCTCAACAAGTAATGTCATTTAGTCATTAAGGGTAAAAAGAGGATGCTAAAATAAGATACTTCCAAAAAAAGAGGACGTCATACTTTTAGGGGCATACTACAAAGGAAAGTCACACATAAAATGGAATATAGCAACTAATGAAGATCAAATCCACAACGAGAGTGCCAATCCATAAAAGTCTCTCTTGATAGTTAACAATCATAAGTCTAGCTTCTAAGAGCAGTAACTCTGTGTCTCTTAAGAAACAGAGAGTTAAAGCCAACGTTATCTTTGGTGTGTTCTCTATCAATTGCATATTTTTGTGTTTGTGACGCCCAACTTTCTATTTGTTTTTGTGTTCCATCTCTATGATTGCCTTGCTAGGATTTGTTATGAGTACAGTTCTCTTTTCCAGTAAAACCTAGTAAGAATAATATCCATCTTTGATCAGTATAGTAGAGAATTCGCCAATTCGGCGTGTTTCACCTGTCTTCGACCAGACTTTGACCTTGGCATGTTAAGATCAATATCCAAATAGCCTCTGTAGCATCACCAATTTGTCAAAACATATTCAGACATCACTGATGGATTGGCAAACCCACCAGACTCACCACCAATACATTATTTTTTCTTCTCACAATGCAGCAACCAGCTTTAAATGACCATTGGTTAAGCATTAAGAAGGTGTTACCTATCCACTGGTGACATATCCGTGACAGGATTAGCTTCCTTTGACGGCAACAAACTGCCACAGAGCTTTGCCGAAGTAGGGCACCTACCACCACTACAAAAAACTCTCATAACCAAGCACTCGCTTCAACCTTTGCTAATTTGGCAGTTGAAATGTCGCACCAAACAAGTTTTGAGGAATTCCTTTCTCTTCTCCACTCTTCCACTATTCGGTAGTCTCTCTATCTATATGAGGTAGGGGTAAGGTTTGTGTGCATTCTATCTCCCGGACCTCACTAATGAGATCACACTGGTATGTTGTTGGTGTTGCTCCAGCGCAGATAACATCTAGCATGGGGACAGCCTAGGTGCTACGTAAATGTACAATTTCATGATCTACACCTCTATTCATTTGAAAAGATTTAATTTGGTATGTCTAGCCGGCATTATAGAAAGGAGGAGGAGATTCTTTCTAGAATAGATATGCGCCTTTATTTCTTGTTGAGTCAGGAACTGAAATAAAATAATACTCCCTATGTTTCAATAAGAGTGACCTGGTTTGACTTGGCACAAAGTTGTAGAAAATAAAGAAGACTTTTGAATCTTGTGGTTCTAAATTAAAGTTATGTCAAATGTACTAAATTACCCTTTAATCTTGTGGCTTTAAACATGCCACATGGCAAGATGAAATTAAAATGTTTACCAAAAAAAGAAAGAGGTCATTCTTTTTGAAATAGACTAAAAAGGAAATGAGGTCATTCTTTTGAAACAAAGGGAGTATTTGATTCGTCAAAGATATGACCCTTATTAATGAAGATAGAAGGAATGTCAGAACATTTAGCCAATAACCAACTACACATGAATGTCAGGATTCATGAACTAGAAAATCCTCTATCTAGTAACAGTATCATCCCTTGATACAAGGTAACCACAACAATATTCTAATATGTTTTCAATAAAGATAAGAAAAGTACAAACAAAGAAACAAACAAAAGGTGGGAAAATGGGGTTCTCTTGCTGACAGACATGGAAAACTTGAA</genome_strand>
        <mrna_strand>GAGAAAGGTTTGGATGTAACTTCTCTCAGAGAGGAGTGGGAAATTGTTTCAGAAAGCCAGGATGGCAAAGAGAAGGCGGATAGCGGAAAGACAAAGGTGGGTTCTATATCTGTCTCTCATGTTGGAGATGACAATACTACGTGGGAAGAAGCCCATGCGACTCTTATTGTCCACCCTAAAAGTGAAGGTAAGCAACATGTAGAGTTGAATGCCATGTCTGTTTCTGCAAGGGCTTGAAACTTATATTACCATATGGTCAAAGGGGCTTTATTGTTTTATATCCATCTGTCTATTCCTCCTGATTTCTTCTGTATATAGAAAGTAATTGTGCTCCTGAACAGAACCATGTATGTATGTATATATATGTGCATATTAACGTTATCAAGTATGTGATGTGGATCAATCAAATAAGAAATTTGATTTCTT.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTCAAAAAAA...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAAAAAAAAAAAAA...................................................................................................................................................................................................................................................AAAAAAAAAAAAAAAAAAAAAAAAAAAATTTGGGGGGGGGGGGCGGGCCCCCTTTCCCCCCAAAAGGGGGGTAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0320M09-0CleD/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E218848" ref_strand="+" ref_description="SGN-E218848 [cLEL-18-B17](-)">
      <seq>ggccccaggaaagacaaaggtgggttctatatctgtctctcatgttggagatgacaatactacgtgggaagaagcccatgcgactcttattgtcccccctaaaagtgaaggtaagcaacatgtagagttgaatgccatgtctgtttctgcaagggcttgaaacttatattaccatatggtcaaaggggctttattgttttatatccatctgtctattccccctgatttcttctgtatataaaaagtaattgtgctcctgaacagaaccatgtatgtatgtatatatatgtgcatattaacgttatcaagtatgtgatgtggatcaatcaaataagaaatttgatttcttgtttaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0320M09-0CleD/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0320M09.4" temp_strand="-" temp_description="C02HBa0320M09.4  AC215438.3 htgs_phase:3 submitted_to_sgn_as:C02HBa0320M09 sequenced_by:kribb upload_account_name:korea">
        <position start="112229" stop="3478"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="111936" g_stop="111588" g_length="349"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="349" r_length="349" r_score="0.977"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="111587" i_stop="108995" i_length="2593">
            <donor d_prob="0.000" d_score="1.00"/>
            <acceptor a_prob="0.367" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="108994" g_stop="108984" g_length="11"/>
          <reference_exon_boundary r_type="cDNA" r_start="350" r_stop="360" r_length="11" r_score="0.727"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="108983" i_stop="107132" i_length="1852">
            <donor d_prob="0.615" d_score="0.00"/>
            <acceptor a_prob="0.443" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="107131" g_stop="107102" g_length="30"/>
          <reference_exon_boundary r_type="cDNA" r_start="361" r_stop="390" r_length="30" r_score="0.700"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0320M09.4" gen_strand="-" ref_id="SGN-E218848" ref_strand="+">
        <total_alignment_score>0.977</total_alignment_score>
        <cumulative_length_of_scored_exons>390</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0320M09.4" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E218848" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="111936" e_stop="111588"/>
          <exon e_start="108994" e_stop="108984"/>
          <exon e_start="107131" e_stop="107102"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGATAGCGGAAAGACAAAGGTGGGTTCTATATCTGTCTCTCATGTTGGAGATGACAATACTACGTGGGAAGAAGCCCATGCGACTCTTATTGTCCACCCTAAAAGTGAAGGTAAGCAACATGTAGAGTTGAATGCCATGTCTGTTTCTGCAAGGGCTTGAAACTTATATTACCATATGGTCAAAGGGGCTTTATTGTTTTATATCCATCTGTCTATTCCTCCTGATTTCTTCTGTATATAGAAAGTAATTGTGCTCCTGAACAGAACCATGTATGTATGTATATATATGTGCATATTAACGTTATCAAGTATGTGATGTGGATCAATCAAATAAGAAATTTGATTTCTTGTTCATCACTTGTTACTTTATATGTCAATGTCAAATGTGAAACCACAGCAAAAATCAACAATGGAGGAGTTCAAAACTCCATGTGAAAATGAGAAATAGAACGAATGAGTATCGAGGATAAGCCAGGTGAAACGAGCAAACACATTGCTGTAAGGCGCGAAATGGAGCCTTCAATGAAGACTACCACTACCAAAGACTTGTTTGCAACTCTCTGAAAAGGTTGCAAAGATTCTAAAGTAGTGTTTTAAATCAATTAAACTAGTGTTGTTGCACCAATCAGAAAGTGATTGGTATTTGAATTTGGAACAGTTCTATTTTGAAAATTTTGATAAAAACATTATTTTTTTAATTAAAACTACCTCCCCTCATTTTTATGTAGAAGCTAAGGTGCATATACAGTTTCTGCTAAATACATGCAGTTACTCAAAATATTGTTATGGTATTACATAAAAAGTTGCACAGTTTCTGGTCTTCTTGAGTGAAAGAGACAGTTCCTGATCATAGCAACAGTTTTGGGGGCTTCCTCCACTTCATAAATTTTGTATGATAGCTTCACAGAAATGATACAACAAATAGATACAATTCTCTTCTAAACACATTTCTTACATATTGTACAACTTAATATCTAACCTCTATATGTAGCTTCATGAATTAAAAGTGAAAGAATAATAATAACAATAATAATACTCATACTGGTGGGAGGCTTAAATAATACTCCAACTCCTCCCAGCTCAATGCATGACTGAGCCTTCCAAAGACAAATGAAGCAGATAAAATGAAGCAATTCACTCTTTTTTTTATTTTGGCAAACGGAGACGACTCATCATTGTTTCCTTCTCTTTGGTTCGCGCTGCTCCCCTAACTGCAAAGAAACATACATCTCATCATCTGATCCTCCCACCACAGAGAGTCTTTTTAGTTCCCCATTTCCATGTTGAATCCCAGAGACACTTGGGATAAACTGATGCTCGACGCAAGGAGTTGCTTTATTTCCATCCTGAATGTGGAAGTGTTTATGCTCAAGTGGTGGAACTACCCCTTCGTCAGATTCATCATCGATGGGATCTTGTCGGACGTTTAAATTGATGGGCTCAAAGTTTACTTCAGCTTTCAGTTGAATCCGCTCGGCTGGTGATGACCCTCCAACAGCCGAACCAATACCCGCAGCTGATGCAATAATTTGATCTTGCAATGCAACTGATTTAGAGGAAGTGAATACAGAAGTAGGGACTACAGATATGAAATAGTAAATGATAGAGATCAAGAAAATTTGAAGGCAAAAATTAGAAATCAAAGTTTTTATTAGACTGAATACTAAGTTTTTGGGCTTATATCTACAATCTTTTTGTTCCGCCACATTTCACAAATATTTCCTCAAAGACCAAACTGCTATATCCATATTGGGGACACCTTTTAGAGAGCTAATAATCTTATACTAACCAAGGCATTTATAATTTAAGCTGGTATTTAACATGACCATGCAAAAAGTAACCACATATTGGTGAGTCCTTCCCCTCCAAGAACCACACTCCACGTATAACCCTTTTCGTTGTAAGGTTAGGGGTTGCATTTCATGTCATATAATGTCAAAATCCAGAATTTCATGACGATATTTAAAATTTCAAAGAATAAGGAGAATTAGATGCTGAGAGATACCAACCTTGGAGACTCTCGTTGGATGTAATGAGATCAAGTTCAAGAAGATCAAGGAGACGCCCCAAGTCAACCCCACTAGTCCAATTCTCAGGAGGTTGGCCAACTCTCAATTTTAAACGACCTCGATTGGCAGTTCCCCCCCAAATTATTCCTATAGGTCGTGGCTTCTCCCCCTCAGGGCTAGTCAAGAGAATGAGGCTACCACTGTCACCTTCAAGATCAAATGTCTGTTGGTTCTCACCAACAACTAGAAAATCTGTAAAGAAACAAATTCCTTTTTCATCATTATACTCCAGGGCATAGGCCATAATGTTTCCAGTCGTAAGACCAGAGCTCCTTCCAACTTTCACCACTTGCCTACCAATGACACTACCGACAGGAGACTGTAAGTCTATTTTATTGACATCACCTATGTCTCCTATTCCTTTCACAGACGTCGTTACATTCAACATGTTGAAATCTTCTGCAAATGGAATAAATGCTCCATCAGCTCGAACAAACGTTTCTGCAAGATTACGACATCACAAACAGAGTACATGGGTGTCAGGATCCAATTTGAAATACTACTATTGTTCAATGGGGCAAAAATGATACAATAAACACTGTTTAAATTACCTGGATTTGTACCAGCAAATATGCCATACCAAAGATCATCTGTTATGAAGGATGTAGCCCTCTCTACAGCACCTAAATACACCCCAGGCCCCAGGCTAGGTGGCAGAGGATGAAACATTTTCTGGCTTGGATAATCCAAGTCAACAGCTACATGACGATTGGTAAGGAAACCGACCTGCCTGATACCTGTCCGACTTTTAACAATCGCACCCAAGGTTCCATATGTTTCCTGACTAGCAACCTAGGACAGATGAAAGAGAAAAGGTTACTTCAGAATACAATGTTATGCGAAGCCAAATCAATTAAGTCAATCATTCTGCAGGATCAAGAAAAGTAATCACTTCTCTCTCAACATGGGCTTCGTGTCAACATTCTTAAAGAGGAATTTTTTTTGCTTAACAATGAATTACCTTTTAAACATCATAACTAACTTCAGAAGTTACTTTTGTCCTACTGTTAAGCTTATAAAATCTCCAATCAATAATAGTACCTCGGTTAACAATTACTCGCAATTTTATCTCTAGGTAATAAATTTTAGGTCCATTCTTTTATAATGAACTTTAATAATTAGTGGATCTCAACAAGTAATGTCATTTAGTCATTAAGGGTAAAAAGAGGATGCTAAAATAAGATACTTCCAAAAAAAGAGGACGTCATACTTTTAGGGGCATACTACAAAGGAAAGTCACACATAAAATGGAATATAGCAACTAATGAAGATCAAATCCACAACGAGAGTGCCAATCCATAAAAGTCTCTCTTGATAGTTAACAATCATAAGTCTAGCTTCTAAGAGCAGTAACTCTGTGTCTCTTAAGAAACAGAGAGTTAAAGCCAACGTTATCTTTGGTGTGTTCTCTATCAATTGCATATTTTTGTGTTTGTGACGCCCAACTTTCTATTTGTTTTTGTGTTCCATCTCTATGATTGCCTTGCTAGGATTTGTTATGAGTACAGTTCTCTTTTCCAGTAAAACCTAGTAAGAATAATATCCATCTTTGATCAGTATAGTAGAGAATTCGCCAATTCGGCGTGTTTCACCTGTCTTCGACCAGACTTTGACCTTGGCATGTTAAGATCAATATCCAAATAGCCTCTGTAGCATCACCAATTTGTCAAAACATATTCAGACATCACTGATGGATTGGCAAACCCACCAGACTCACCACCAATACATTATTTTTTCTTCTCACAATGCAGCAACCAGCTTTAAATGACCATTGGTTAAGCATTAAGAAGGTGTTACCTATCCACTGGTGACATATCCGTGACAGGATTAGCTTCCTTTGACGGCAACAAACTGCCACAGAGCTTTGCCGAAGTAGGGCACCTACCACCACTACAAAAAACTCTCATAACCAAGCACTCGCTTCAACCTTTGCTAATTTGGCAGTTGAAATGTCGCACCAAACAAGTTTTGAGGAATTCCTTTCTCTTCTCCACTCTTCCACTATTCGGTAGTCTCTCTATCTATATGAGGTAGGGGTAAGGTTTGTGTGCATTCTATCTCCCGGACCTCACTAATGAGATCACACTGGTATGTTGTTGGTGTTGCTCCAGCGCAGATAACATCTAGCATGGGGACAGCCTAGGTGCTACGTAAATGTACAATTTCATGATCTACACCTCTATTCATTTGAAAAGATTTAATTTGGTATGTCTAGCCGGCATTATAGAAAGGAGGAGGAGATTCTTTCTAGAATAGATATGCGCCTTTATTTCTTGTTGAGTCAGGAACTGAAATAAAATAATACTCCCTATGTTTCAATAAGAGTGACCTGGTTTGACTTGGCACAAAGTTGTAGAAAATAAAGAAGACTTTTGAATCTTGTGGTTCTAAATTAAAGTTATGTCAAATGTACTAAATTACCCTTTAATCTTGTGGCTTTAAACATGCCACATGGCAAGATGAAATTAAAATGTTTACCAAAAAAAGAAAGAGGTCATTCTTTTTGAAATAGACTAAAAAGGAAATGAGGTCATTCTTTTGAAACAAAGGGAGTATTTGATTCGTCAAAGATATGACCCTTATTAATGAAGATAGAAGGAATGTCAGAACATTTAGCCAATAACCAACTACACATGAATGTCAGGATTCATGAACTAGAAAATCCTCTATCTAGTAACAGTATCATCCCTTGATACAAGGTAACCACAACAATATTCTAATATGTTTTCAATAAAGATAAGAAAAGTACAAACAAAGAAACAAACA</genome_strand>
        <mrna_strand>GGCCCCAGGAAAGACAAAGGTGGGTTCTATATCTGTCTCTCATGTTGGAGATGACAATACTACGTGGGAAGAAGCCCATGCGACTCTTATTGTCCCCCCTAAAAGTGAAGGTAAGCAACATGTAGAGTTGAATGCCATGTCTGTTTCTGCAAGGGCTTGAAACTTATATTACCATATGGTCAAAGGGGCTTTATTGTTTTATATCCATCTGTCTATTCCCCCTGATTTCTTCTGTATATAAAAAGTAATTGTGCTCCTGAACAGAACCATGTATGTATGTATATATATGTGCATATTAACGTTATCAAGTATGTGATGTGGATCAATCAAATAAGAAATTTGATTTCTT.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTTAAAAAAA............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAAAAAAAAAAAAAAAAAAAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0320M09-0CleD/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E712335" ref_strand="+" ref_description="SGN-E712335 [FB04CC06]">
      <seq>gagaaaggtttggatgtaacttctctcagagaggagtgggaaattgtttcagaaagccaggatggcaaagagaatgcggatagcggaaagacaaaggtgggttctatatctgtctctcatgttggagatgacaatactacgtgggaagaagcccatgcgactcttattgtccaccctaaaagtgaaggtaagcaacatgtagagttgaatgccatgtctgtttctgcaagggcttgaaacttatattaccatatggtcaaaggggctttattgttttatatccatctgtctattcctcctgatttcttctgtatatagaaagtaattgtgctcctgaacagaaccatgtatgtatgtatatatatgtgcatattaacgttatcaagtatgtgatgtggatcaatcaaataagaaatttgatttcttgttcaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaattttgggggggggg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0320M09-0CleD/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0320M09.4" temp_strand="-" temp_description="C02HBa0320M09.4  AC215438.3 htgs_phase:3 submitted_to_sgn_as:C02HBa0320M09 sequenced_by:kribb upload_account_name:korea">
        <position start="112313" stop="3478"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="112013" g_stop="111584" g_length="430"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="430" r_length="430" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="111583" i_stop="111209" i_length="375">
            <donor d_prob="0.000" d_score="1.00"/>
            <acceptor a_prob="0.488" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="111208" g_stop="111201" g_length="8"/>
          <reference_exon_boundary r_type="cDNA" r_start="431" r_stop="438" r_length="8" r_score="0.500"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="111200" i_stop="110939" i_length="262">
            <donor d_prob="0.067" d_score="0.00"/>
            <acceptor a_prob="0.000" a_score="0.62"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="110938" g_stop="110884" g_length="55"/>
          <reference_exon_boundary r_type="cDNA" r_start="439" r_stop="493" r_length="55" r_score="0.618"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0320M09.4" gen_strand="-" ref_id="SGN-E712335" ref_strand="+">
        <total_alignment_score>0.957</total_alignment_score>
        <cumulative_length_of_scored_exons>493</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0320M09.4" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E712335" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="112013" e_stop="111584"/>
          <exon e_start="111208" e_stop="111201"/>
          <exon e_start="110938" e_stop="110884"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAGAAAGGTTTGGATGTAACTTCTCTCAGAGAGGAGTGGGAAATTGTTTCAGAAAGCCAGGATGGCAAAGAGAATGCGGATAGCGGAAAGACAAAGGTGGGTTCTATATCTGTCTCTCATGTTGGAGATGACAATACTACGTGGGAAGAAGCCCATGCGACTCTTATTGTCCACCCTAAAAGTGAAGGTAAGCAACATGTAGAGTTGAATGCCATGTCTGTTTCTGCAAGGGCTTGAAACTTATATTACCATATGGTCAAAGGGGCTTTATTGTTTTATATCCATCTGTCTATTCCTCCTGATTTCTTCTGTATATAGAAAGTAATTGTGCTCCTGAACAGAACCATGTATGTATGTATATATATGTGCATATTAACGTTATCAAGTATGTGATGTGGATCAATCAAATAAGAAATTTGATTTCTTGTTCATCACTTGTTACTTTATATGTCAATGTCAAATGTGAAACCACAGCAAAAATCAACAATGGAGGAGTTCAAAACTCCATGTGAAAATGAGAAATAGAACGAATGAGTATCGAGGATAAGCCAGGTGAAACGAGCAAACACATTGCTGTAAGGCGCGAAATGGAGCCTTCAATGAAGACTACCACTACCAAAGACTTGTTTGCAACTCTCTGAAAAGGTTGCAAAGATTCTAAAGTAGTGTTTTAAATCAATTAAACTAGTGTTGTTGCACCAATCAGAAAGTGATTGGTATTTGAATTTGGAACAGTTCTATTTTGAAAATTTTGATAAAAACATTATTTTTTTAATTAAAACTACCTCCCCTCATTTTTATGTAGAAGCTAAGGTGCATATACAGTTTCTGCTAAATACATGCAGTTACTCAAAATATTGTTATGGTATTACATAAAAAGTTGCACAGTTTCTGGTCTTCTTGAGTGAAAGAGACAGTTCCTGATCATAGCAACAGTTTTGGGGGCTTCCTCCACTTCATAAATTTTGTATGATAGCTTCACAGAAATGATACAACAAATAGATACAATTCTCTTCTAAACACATTTCTTACATATTGTACAACTTAATATCTAACCTCTATATGTAGCTTCATGAATTAAAAGTGAAAGAATAATAATAACAATAATAATACTCATACTGGTGGGAGGC</genome_strand>
        <mrna_strand>GAGAAAGGTTTGGATGTAACTTCTCTCAGAGAGGAGTGGGAAATTGTTTCAGAAAGCCAGGATGGCAAAGAGAATGCGGATAGCGGAAAGACAAAGGTGGGTTCTATATCTGTCTCTCATGTTGGAGATGACAATACTACGTGGGAAGAAGCCCATGCGACTCTTATTGTCCACCCTAAAAGTGAAGGTAAGCAACATGTAGAGTTGAATGCCATGTCTGTTTCTGCAAGGGCTTGAAACTTATATTACCATATGGTCAAAGGGGCTTTATTGTTTTATATCCATCTGTCTATTCCTCCTGATTTCTTCTGTATATAGAAAGTAATTGTGCTCCTGAACAGAACCATGTATGTATGTATATATATGTGCATATTAACGTTATCAAGTATGTGATGTGGATCAATCAAATAAGAAATTTGATTTCTTGTTC.......................................................................................................................................................................................................................................................................................................................................................................................AAAAAAAA......................................................................................................................................................................................................................................................................AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAATTTTGGGGGGGGGG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0320M09-0CleD/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E747099" ref_strand="+" ref_description="SGN-E747099 [GI|33317917]">
      <seq>ggcacgagtgacgttaggggaatggcgatgttaatagaggagctgattaagtcaatagagatgtggctgaagctgatcaagaagcctcaggagtacattgacccgacacttgatccagttctattagttccgggtgttgccgggtcgattctcaacgctgttgataagaaaacaggtcggaccgaacgggtttgggtccgaatacttggtgccgatcatgagttttgtgataagttatggtgtcgttttgacccttctaccggtaaaactaccaatttagaccctgacacaagcattgaggtcccggaggacagatatggactgtatgctattgataatttggatcctgacatgattattgggtctgattgtgtatattattaccatgatatgatagttgagatgctcagctggggttaccaagaaggaaaaacactatttggatttggctatgatttccggcagagcaacaggcttcaggaaacaatggagtgttttgcgcaaaagctagaatccatacatactgcgtcaggaggcaagaagataaacattataagtcattctatgggtggtcttctggttaaatgtttcatggctctccacagtgatatttttgaaaaatatgtgaagaattggattgcaatagctgcaccattccaaggtgctcctggatatattacctcttcattattgaacggaacatcatttgtgcatggatgggaagagaggtttttcatatccaaatggagtatgcatcaactgttgatcgagtgtccgtcaatatatgaattaatggggtgtcctgatttccactgggagcatgcaccagttctagaaatttggaaggaaaaatctaacagtaatggagagtcctccgttgtactcgagtcttactctccactggaagctgtatcagtgtatgagttagctcttgcaaacaacaaggttacttataatggagaaaaaatttctctgccgttcaatctggaactcttgaaatgggctaataagacccgagagatattgtgccatgcaaaggttcctgataaagttaagttctacaacatctatgggaccaattatgagacgcctcatagtgtctgttatggaagtcagaatgcacccatttctgatcttcaacaattaccatttgtccagtctaactacatatcggttgatggagatggtacagttccaacagaatctgcaaaggctgatgggcttaaagcagaagctagggttggagtccctggggatcacagaggaatcgtctgtgaccgccacgtgtttagagtgatcaagcactggttgcgagcagatcatgatccttattacaatccaatcaacgattacgttatcctacccacttcatttgacatcgaaaggcaccatgagaaaggtttggatgtaacttctctcagagaggagtgggaaattgtttcagaaagccaggatggcaaagagaatgcggatagcggaaagacaaaggtgggttctatatctgtctctcatgttggagatgacaatactacgtgggaagaagcccatgcgactcttattgtccaccctaaaagtgaaggtaagcaacatgtagagttgaatgccatgtctgtttctgcaagggcttgaaacttatattaccatatggtcaaaggggctttattgttttatatccatctgtctattcctcctgatttcttctgtatatagaaagtaattgtgctcctgaacagaaccatgtatgtatgtatatatatgtgcatattaacgttatcaagtatgtgatgtggatcaatcaaataagaaatttgatttcttgttcatcaaaaaaaaaaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0320M09-0CleD/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0320M09.4" temp_strand="-" temp_description="C02HBa0320M09.4  AC215438.3 htgs_phase:3 submitted_to_sgn_as:C02HBa0320M09 sequenced_by:kribb upload_account_name:korea">
        <position start="120176" stop="3478"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="119867" g_stop="119623" g_length="245"/>
          <reference_exon_boundary r_type="cDNA" r_start="18" r_stop="262" r_length="245" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="119622" i_stop="119443" i_length="180">
            <donor d_prob="0.977" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="119442" g_stop="119351" g_length="92"/>
          <reference_exon_boundary r_type="cDNA" r_start="263" r_stop="354" r_length="92" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="119350" i_stop="116813" i_length="2538">
            <donor d_prob="0.991" d_score="1.00"/>
            <acceptor a_prob="0.900" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="116812" g_stop="116694" g_length="119"/>
          <reference_exon_boundary r_type="cDNA" r_start="355" r_stop="473" r_length="119" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="116693" i_stop="116349" i_length="345">
            <donor d_prob="0.984" d_score="1.00"/>
            <acceptor a_prob="0.986" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="116348" g_stop="116213" g_length="136"/>
          <reference_exon_boundary r_type="cDNA" r_start="474" r_stop="609" r_length="136" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="116212" i_stop="116060" i_length="153">
            <donor d_prob="0.937" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="116059" g_stop="116008" g_length="52"/>
          <reference_exon_boundary r_type="cDNA" r_start="610" r_stop="661" r_length="52" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="116007" i_stop="114715" i_length="1293">
            <donor d_prob="0.986" d_score="1.00"/>
            <acceptor a_prob="0.942" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="114714" g_stop="114614" g_length="101"/>
          <reference_exon_boundary r_type="cDNA" r_start="662" r_stop="762" r_length="101" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="114613" i_stop="114066" i_length="548">
            <donor d_prob="0.942" d_score="1.00"/>
            <acceptor a_prob="0.971" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="114065" g_stop="113883" g_length="183"/>
          <reference_exon_boundary r_type="cDNA" r_start="763" r_stop="945" r_length="183" r_score="1.000"/>
        </exon>
        <intron i_serial="7">
          <gDNA_intron_boundary i_start="113882" i_stop="113648" i_length="235">
            <donor d_prob="0.993" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="8">
          <gDNA_exon_boundary g_start="113647" g_stop="113490" g_length="158"/>
          <reference_exon_boundary r_type="cDNA" r_start="946" r_stop="1103" r_length="158" r_score="1.000"/>
        </exon>
        <intron i_serial="8">
          <gDNA_intron_boundary i_start="113489" i_stop="113380" i_length="110">
            <donor d_prob="0.983" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="9">
          <gDNA_exon_boundary g_start="113379" g_stop="113325" g_length="55"/>
          <reference_exon_boundary r_type="cDNA" r_start="1104" r_stop="1158" r_length="55" r_score="1.000"/>
        </exon>
        <intron i_serial="9">
          <gDNA_intron_boundary i_start="113324" i_stop="113206" i_length="119">
            <donor d_prob="0.975" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="10">
          <gDNA_exon_boundary g_start="113205" g_stop="113152" g_length="54"/>
          <reference_exon_boundary r_type="cDNA" r_start="1159" r_stop="1212" r_length="54" r_score="1.000"/>
        </exon>
        <intron i_serial="10">
          <gDNA_intron_boundary i_start="113151" i_stop="112194" i_length="958">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="11">
          <gDNA_exon_boundary g_start="112193" g_stop="111553" g_length="641"/>
          <reference_exon_boundary r_type="cDNA" r_start="1213" r_stop="1853" r_length="641" r_score="0.970"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0320M09.4" gen_strand="-" ref_id="SGN-E747099" ref_strand="+">
        <total_alignment_score>0.990</total_alignment_score>
        <cumulative_length_of_scored_exons>1836</cumulative_length_of_scored_exons>
        <coverage percentage="0.991" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0320M09.4" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E747099" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="119867" e_stop="119623"/>
          <exon e_start="119442" e_stop="119351"/>
          <exon e_start="116812" e_stop="116694"/>
          <exon e_start="116348" e_stop="116213"/>
          <exon e_start="116059" e_stop="116008"/>
          <exon e_start="114714" e_stop="114614"/>
          <exon e_start="114065" e_stop="113883"/>
          <exon e_start="113647" e_stop="113490"/>
          <exon e_start="113379" e_stop="113325"/>
          <exon e_start="113205" e_stop="113152"/>
          <exon e_start="112193" e_stop="111553"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGGAATGGCGATGTTAATAGAGGAGCTGATTAAGTCAATAGAGATGTGGCTGAAGCTGATCAAGAAGCCTCAGGAGTACATTGACCCGACACTTGATCCAGTTCTATTAGTTCCGGGTGTTGCCGGGTCGATTCTCAACGCTGTTGATAAGAAAACAGGTCGGACCGAACGGGTTTGGGTCCGAATACTTGGTGCCGATCATGAGTTTTGTGATAAGTTATGGTGTCGTTTTGACCCTTCTACCGGTAAGTTGAATTTAGGATTTTCGCTAGCTATTTTTGTAGTTAGTGATAATTTTTGTTGTTGTGCTCTTAAAGTCTGTATTTTGATAGATTATAGGGAAAGAAGAAGCTGGTTTTAGGTGGTAAAGATTGTATTTTGATGTTATTTATCTCATTTTTTTCATTTTGGGTGTTATCAAACAGGTAAAACTACCAATTTAGACCCTGACACAAGCATTGAGGTCCCGGAGGACAGATATGGACTGTATGCTATTGATAATTTGGATCCTGACATGGTTAGCTGCCTTTTAGATTATACTAACTATGTGTTGTCATTGTGTTGAAGTTGTAGAAGGTTATTTATCGAGTGATTAATGTTTGTCACTCGGAACCTACATATACAATCGTACTGGAGCAGTGCTGAGATTTGTGCCAATGATAAATCAGAATTATTAGCAAAAATAGTACATGCATTAATTATATGTATGAGAGTCCCCTGTTTGGTGCACTTTTACATGCTCTTCCAAATTACTTTAGGATGTTGTGGTGCTAGTGTTATGTACATCTGATGGATGGAGAATTTATTAGTCTTCACCACTCCCTTCAACTTTGCTCCTAACTCATTTGGATTCAATATAGACCTGAGTATCTTCCTAGTCTCCAAGATCTTCCTTATCACCACGTGGCATTTGTTGGAATAGTGTGTATGTACCCATTTGATCCAAAGACAATTCTTTTTCTCATGCACTGCCCATAACAGCTTCAGGATGGCAGCATTATTCCAAACTTGCAGGTTGATTAGATTTTGACCCCCAGCTGATTTTGGAAGACAAAGTTTCTCCCATGAAACCAGTGCTTTCTAGAACTTAGAGTTGAACCTGTCCATAGATAGGTTCTGCAAATCCCTTCAATTAATTTCAGTATTCTTTTTGGCAATACAAAATTTGTGCCTAATAAGTTTGCATCCCAAGCACTACTGACTTCAATAACTGGATCCTTCCTGCATAGGAGAGTAATCTAGCTGTCCAACATCTTATTCTTTCAGCTCTCTACCAGTGGCATACGTTGAGCTACAGTGAGTCGCTTAGAGGATATAGGCACCCCTAAATATTTGGAAGGCATCTCACCTTCAACATAGTCCAAAGTAGCTAGTATTTTTTGCTTCAAATCAGGTTGGTTTCACTCCAGTGACATATATGGAACTTTTCTCTGTGTTTGCCTGTAAGCCAGAAACTCAGAAAATCTTTGTAAAGCATCTTGCATCAGTTGTATAGAATCAATATCAGCCTTGCAAAACATCAAGAGATCATCTGCAAAGCAGATATGCATTACTCCAAACTGCTTACATCTTGGGTGCAATTTGAATTGAGGAATCTCCTTCAGCTCATTCAACTCTCTTTAAAGATACTCCATTGCTAGAACAAATAAGTAGGGTGACATTGGATCACCTTGTCTGATCCCTTCTTCCTTGGAATAATGGTGGCACACCACCATTGATGATTAGTGAGTATGAAACTGTAGATATGCACTCCATTTCATAGTTCACAAACTGAAAAGGAAAACCCAGTCCAGCTTTGCTAAGAATTCCCACTCAATAGAATCATAAGACTTTCTCAAGTCAACTTTCATAGTACATCTAGGAGATAAACCTGTCCTAGTGTACCACTTCAACAGTTCATGACTTAACAAAATATTATATATACACTCCATTGTTTATTGAGGAGTGTATTACTAATACCATGGATTTCTAGGCATTAGTAGTGCAAAGGATTTAATACATGCATTAATAGGGTTAGAGACCCAATTACTCTTCAAAAGTACTTTTACATCTTTTCCACCATAATTGTGAAGGATACTTTTGGAAATAAATATTTTTATACAATGCATGTTACTTCAATACACCAAACCAAACGATGCACAAGTACTAGTCTATGCATAATTAATACAAGTATAACTAACACATGCATTACTAATACACTCTATTGAGTTTTATTTTTAAACACTCTACCAAACGACCCATAAATCACTATAGATTGGGGTTTTATGTACTGAATCAGTGTTAAGTGCTAAAGAAATAGGAATTTACCAACGAGGGGGAAGCGTCCAATCGTGTTTGAGCATTTCATTGTGTGTGTAACATTATTTTGAACAATGGAGTATTCTTGTTGACTTCTACATGTATTTCAAGGTAATACTTTATGCATTGGATTGGTACAGGTGTAATAGATCTTCGACTTGCTTTTCGGCTAAGAAATTCCCAGGAAGTTCTTTCTCATTAGAGACACAGCAAGGACAATTAAGTTTCTTTCACCCGCTAATGATGAACTATTTGAAGGAAATAAGTGGACACGTTACGGTTTCTAGAAATGCACACAGTGAACAGCATAGATAATTCACTGAATAAATTAGTCTGAGTTGTTTCTTTAGTTTTATTGAAAAGATAAGTTATCACAAAGAGAAGTCATTTTATAAAGTTCCTTACCATCAAGGGTGACACGAGGTTGAATGCGGTAAGTTTAAAATCCTTCTGATGTATAGGGGAAATCAGTGGTCGGGGGGCTGCAATGGATTAGGGGGCCGGACAAAAGTGCTATGATGCTAGAACCTTCGAGTACAAGAGAGAATGAACTTGTGCTATGATGCTAGAACCTTCGAGTACAAGAGAGAATGAAGAGTTCATTCTCAAAGGGAGAGAGTGAAGGATTTGTGTTTGAAAACAAATTGATTTTTTTCATAATGATTCAGTTGTATGTGCTAAAATATTGAAGTCAATATAGTAATGACTTTTTTATGAAATCAGAAATTTGATTTCTTCATCTCATCCTCTTTTGCAGATTATTGGGTCTGATTGTGTATATTATTACCATGATATGATAGTTGAGATGCTCAGCTGGGGTTACCAAGAAGGAAAAACACTATTTGGATTTGGCTATGATTTCCGGCAGAGCAACAGGTAGGTGATGGTCATTCATTGAAATGATTTCCAGTAAATGTTTCCCCTGTTAACGATCAGCTTTTGAGTATCACTAATTTTATGTGTTTCTTAATCCTCCTTGAAGAATTGAAATAGAGATGTCATTTACAGATTTAGTCTCTTGCTTAACAGTATGCGGGCGAGATTAATAACCACATACTCTCAGTGTGGTGTTTCTCTATTATCATATCTTAATATTGTTTACTATCTAAATTTAGTGGGCGACTTACTCAGACATTAATATTACATACTCATATTTTGTGTTGAAAACGTTGCCATGTGTTGATGCTGAAAATTTTGCTATATCCTTTTTTCCCCCTCCAGGCTTCAGGAAACAATGGAGTGTTTTGCGCAAAAGCTAGAATCCATACATACTGCGTCAGGAGGCAAGAAGATAAACATTATAAGTCATTCTATGGGTGGTCTTCTGGTTAAATGTTTCATGGCTCTCCACAGTGATGTAAAGCCTCCTCTCCCTTTCTTTTTGTATTTCTGACCTGATACATCAACTCCTAACCACTCTTCGTGGACCTACTTCACTTCCCTGACCACTCTTTTTGGCCCTAACATATTTATTTTAGTTTTAATCTTTTAATTAATGTTGTATTTGCAGATTTTTGAAAAATATGTGAAGAATTGGATTGCAATAGCTGCACCATTCCAAGGTAAGCAGCTCTTTTGTCATTTCAAGTAAGCTGCATGGTATCCCAATGATGTCTCCACTAATATGGGAAGGAGGGAGTTTTTTTCGATTTTAAATTTCTCGTTTAGTTTTTCTTAAAAAAAAAATCTTAATTTTAGCTTACAAAAGATACAAGTTTAAATTTATGTAAATCTATATGCCTAATTTCGTGTATGAATTATCTTTTGGCATGGTTGTGTAACTGTCTATAGAATGAGAAGAAGACTTATCGACATTGATTAGCAAAGAACGATGATGTAACGACATAAAAGTAATAATATTTTTCAGTATTACTTATAAAAAAGAAAAGGTAATCATATTTGCATATTGAGGCCAAACGCTATGCTGTCTAGTAAACCGGTATGCAATAGTCTATAAGTTCAAGCTTTGAAGGCTCAGCCATTGAAACAGTTCTTGATAAATAGGTGAGATTGGTAAATGATACTCAAGTAATGACTTATCTTAATTCCGTCTGCTTGATGTAGCTTAATCTTCTAGTAAGTTTATATGTCATCCTTGTTGAGTAAGGTATTCTAACATGTAATAAGGCCTTAGGCTATCACAGGAAAGATATTGGCAAGACTACAGTACTTGAGAGCTCGAAAGCATACCTATAGGCTTAATTTTGAACATAATCGAAATTAACCCAAAAGAAAATTGAAGAAAAGGATATTATATGTAACAGATCTTGCTTTTGATATTTAAATATTTGGAGGCAAACATTCTAATAGACTTAATTATGTTTTCCATGAACGTCTATGAACAGTTGAGGCAAACACAGTCTAATAGAGTTAATTATGTGTTCTATGAATAACTAGACAGTATTGTACAGAAAGCACAGGTTGTATGGTACTATGATTTCAAATTGAGCTTAAATATCTAATTTTGATCTGTCTCAGAATGTTTCTACTGTTTCTTTACTTTTACCCTTACCCTTTAGAATGGTAGCTTTTCAGGATACTGATTGTAGGAGAATCTACATTTTGTATAATTATGATGTTATCGATTTGGTGTGGAACCTTGGATCTGCAAGGGATAATATCTAATCTTGTAGGCTATGGTTTTGGAATTAATATCCGTGATTTTATTTCTTAAATTCTTACATTCCAAATTATTGCAACTTTATTCCTCTGTCCCCTTGTTTTGTCCTTCTCTCTGACATTAAGCTAAGATCAATTAGTGGTGCCGGCATGGTTTGTGGTGTTCTTTTGTGTCTTACGGATTTTAATTTGATATTCTGATTGATGCGATCCGTCTGTGGTTGATCACGTTACAGGTGCTCCTGGATATATTACCTCTTCATTATTGAACGGAACATCATTTGTGCATGGATGGGAAGAGAGGTTTTTCATATCCAAATGGAGTATGCATCAACTGGTTTGTGTTTCAACTCCACTTGAATTGCACTATGATCTATTCTCCCTTTTCTGTCTTCCCTCCTTCCATTTGCATACTTTGTTATCTAGATTTCTTGCACTATTTTGTTAGACAGTGCTTAGTTCTGTGTCATTTGTGCATAGTCATTTTTTCTTCGTTGTTTCTGCTATCTTGTTGAAATTTGTGTCTAGATTATTGTATATGTTGGTCAATCTAAAACAGTAATTAATGATAGGAAGTGGCACGGTTTTGCATATTTTTGGAGGCTCTATGTTTCTTATATCATTAATCCACAGTGTTACTCATACATTCATAGGGGTCTTTTGTTGATAATATGTTCTCCATTCTGGTTTTAAGTGTGCCATTTGTCTTTTTCTTGGATAGTTTCTTTGATATCTATTTATTGGTTAGACTTCAGTTACATATTAAAGCATCCATTATAGGGAATTTGTCTAGCAATATGGACAGGAGGCTTGTTCGTTTGTAATTTTGTCAGCAAAAATTACTTTCTTTGATAGATCAATTACATCTGATATTTGGTCTTGCAGTTGATCGAGTGTCCGTCAATATATGAATTAATGGGGTGTCCTGATTTCCACTGGGAGCATGCACCAGTTCTAGAAATTTGGAAGGAAAAATCTAACAGTAATGGAGAGTCCTCCGTTGTACTCGAGTCTTACTCTCCACTGGAAGCTGTATCAGTGTATGAGTTAGCTCTTGCAAACAACAAGGTGAGCTGGCCATGGAATAGAATGTCACAATTTATACTGAAAAGCTGGTTTTCATGAGGTCTCCTCATTGTATGGCTTCTGGATAGGTCATAGACTTTTCATTGAAGTAAAATGAATTTCCTTTTTCCCCTATCTTGAGCTGTCTGTATATTGACTTGAACCATACACATTATTGTTGTTTCATCTCTTTGGAAGTTGAACGTCAACTATAAAATTCATTTATCCGTCTTTGCAGGTTACTTATAATGGAGAAAAAATTTCTCTGCCGTTCAATCTGGAACTCTTGAAATGGGCTAATAAGACCCGAGAGATATTGTGCCATGCAAAGGTTCCTGATAAAGTTAAGTTCTACAACATCTATGGGACCAATTATGAGACGCCTCATAGTGTCTGGTACTAATTCTTTCTTAAATATTTGGATATCAATTTTACTTGTCTGATGATGGATACTGTTTATAGTTCTAATTCATGAGAATATGGTAACTGAATTGGCTTCTTTGCAGTTATGGAAGTCAGAATGCACCCATTTCTGATCTTCAACAATTACCATTTGTCCAGGTAACATTGTTTTATTTGACTTTGGACTGGTCTGACTGGATTCTGAATTATGTATTTTCATTTCTTCCTTGTCTTATACCACTGGTCTCTCTGACTATCATTTTTATGCATATTCACAGTCTAACTACATATCGGTTGATGGAGATGGTACAGTTCCAACAGAATCTGCAAAGGTATATGCTCTACATTTTGCCTCATGTGATCGTGATATGAATCTTTTTTTAGTTACATATCTAGAGAGATCTTTAATAATACTTTAGACCATTTTGTATGTTCTCTTGCCAAATTGGAACCAATGTATCATAAGAGTGCGGTATGTGTTGCTTTTAAGTTTAAAGGCATCACGCTTCATTTCTTGACTAGTGTTATATTTTGCTTGAACTTGGGATGTAGTAGGGGGAGACTGGAAGAGAAGGAAAGCCTAAAGCACATACTTGGTTATAACAGATTCCTTAGCCTAGGTCCTTCCATTTATTCTTAACATGTTGTGTTTAGGGTTAATTTGCAGTACAAACATTTCTTATCTTTATCATGCTTGCCTCTCTAAATTGCTCTTACTATTAAAGATGTTAATTTGCACAAGATCTTGGCTTTTAGTTATATGCCCAGTTACATCTTTAAAGTTGTTCATCTTTAGATCTGTCTTGTGTTGTTTTCTCTTGTATCTTTTCATTTCCTGCTTGTAGATGTTGGAATCTCACCAACATTCATTTTGAGCAAGTGCTCTGCTGAAAACCAAGTACCTTCAGGGACCAGGGTTTTGTTTGCTTTTAATTTCTGGTAATGTTAGAAAAAAAAAAGCATTCAGATAGTGAGGTTCTTACCAAGAAGATGTGGATTCTTGGTGATTTCTTTGGTGCCTCAGAAGTTTGAGCCAAAGCTGTTTAAGGGCTGCCAGCACAATGTTCCTGTTGAATAGGAGAAAAAAATGGAAGTAATTAAAAAAAGAAAAAATTTGAAACTGTGCCTACCGTAGTATTTTTCTGCTAAATTACCCTGCACACTAATGTGATTAGTGATTGTTTACTCTGCTACTATAGCTATCTGATCCTGAAAATTGTTAAAAATTATATGGTTTGATGTGCTATCCTTCTCAAGAAATATGGTTCAATATACGATACTTTCTGGCAGGCTGATGGGCTTAAAGCAGAAGCTAGGGTTGGAGTCCCTGGGGATCACAGAGGAATCGTCTGTGACCGCCACGTGTTTAGAGTGATCAAGCACTGGTTGCGAGCAGATCATGATCCTTATTACAATCCAATCAACGATTACGTTATCCTACCCACTTCATTTGACATCGAAAGGCACCATGAGAAAGGTTTGGATGTAACTTCTCTCAGAGAGGAGTGGGAAATTGTTTCAGAAAGCCAGGATGGCAAAGAGAATGCGGATAGCGGAAAGACAAAGGTGGGTTCTATATCTGTCTCTCATGTTGGAGATGACAATACTACGTGGGAAGAAGCCCATGCGACTCTTATTGTCCACCCTAAAAGTGAAGGTAAGCAACATGTAGAGTTGAATGCCATGTCTGTTTCTGCAAGGGCTTGAAACTTATATTACCATATGGTCAAAGGGGCTTTATTGTTTTATATCCATCTGTCTATTCCTCCTGATTTCTTCTGTATATAGAAAGTAATTGTGCTCCTGAACAGAACCATGTATGTATGTATATATATGTGCATATTAACGTTATCAAGTATGTGATGTGGATCAATCAAATAAGAAATTTGATTTCTTGTTCATCACTTGTTACTTTATATGTCAATGTCAAA</genome_strand>
        <mrna_strand>GGGAATGGCGATGTTAATAGAGGAGCTGATTAAGTCAATAGAGATGTGGCTGAAGCTGATCAAGAAGCCTCAGGAGTACATTGACCCGACACTTGATCCAGTTCTATTAGTTCCGGGTGTTGCCGGGTCGATTCTCAACGCTGTTGATAAGAAAACAGGTCGGACCGAACGGGTTTGGGTCCGAATACTTGGTGCCGATCATGAGTTTTGTGATAAGTTATGGTGTCGTTTTGACCCTTCTACCG....................................................................................................................................................................................GTAAAACTACCAATTTAGACCCTGACACAAGCATTGAGGTCCCGGAGGACAGATATGGACTGTATGCTATTGATAATTTGGATCCTGACATG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTATTGGGTCTGATTGTGTATATTATTACCATGATATGATAGTTGAGATGCTCAGCTGGGGTTACCAAGAAGGAAAAACACTATTTGGATTTGGCTATGATTTCCGGCAGAGCAACAG.........................................................................................................................................................................................................................................................................................................................................................GCTTCAGGAAACAATGGAGTGTTTTGCGCAAAAGCTAGAATCCATACATACTGCGTCAGGAGGCAAGAAGATAAACATTATAAGTCATTCTATGGGTGGTCTTCTGGTTAAATGTTTCATGGCTCTCCACAGTGAT.........................................................................................................................................................ATTTTTGAAAAATATGTGAAGAATTGGATTGCAATAGCTGCACCATTCCAAG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGCTCCTGGATATATTACCTCTTCATTATTGAACGGAACATCATTTGTGCATGGATGGGAAGAGAGGTTTTTCATATCCAAATGGAGTATGCATCAACTG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTGATCGAGTGTCCGTCAATATATGAATTAATGGGGTGTCCTGATTTCCACTGGGAGCATGCACCAGTTCTAGAAATTTGGAAGGAAAAATCTAACAGTAATGGAGAGTCCTCCGTTGTACTCGAGTCTTACTCTCCACTGGAAGCTGTATCAGTGTATGAGTTAGCTCTTGCAAACAACAAG...........................................................................................................................................................................................................................................GTTACTTATAATGGAGAAAAAATTTCTCTGCCGTTCAATCTGGAACTCTTGAAATGGGCTAATAAGACCCGAGAGATATTGTGCCATGCAAAGGTTCCTGATAAAGTTAAGTTCTACAACATCTATGGGACCAATTATGAGACGCCTCATAGTGTCTG..............................................................................................................TTATGGAAGTCAGAATGCACCCATTTCTGATCTTCAACAATTACCATTTGTCCAG.......................................................................................................................TCTAACTACATATCGGTTGATGGAGATGGTACAGTTCCAACAGAATCTGCAAAG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCTGATGGGCTTAAAGCAGAAGCTAGGGTTGGAGTCCCTGGGGATCACAGAGGAATCGTCTGTGACCGCCACGTGTTTAGAGTGATCAAGCACTGGTTGCGAGCAGATCATGATCCTTATTACAATCCAATCAACGATTACGTTATCCTACCCACTTCATTTGACATCGAAAGGCACCATGAGAAAGGTTTGGATGTAACTTCTCTCAGAGAGGAGTGGGAAATTGTTTCAGAAAGCCAGGATGGCAAAGAGAATGCGGATAGCGGAAAGACAAAGGTGGGTTCTATATCTGTCTCTCATGTTGGAGATGACAATACTACGTGGGAAGAAGCCCATGCGACTCTTATTGTCCACCCTAAAAGTGAAGGTAAGCAACATGTAGAGTTGAATGCCATGTCTGTTTCTGCAAGGGCTTGAAACTTATATTACCATATGGTCAAAGGGGCTTTATTGTTTTATATCCATCTGTCTATTCCTCCTGATTTCTTCTGTATATAGAAAGTAATTGTGCTCCTGAACAGAACCATGTATGTATGTATATATATGTGCATATTAACGTTATCAAGTATGTGATGTGGATCAATCAAATAAGAAATTTGATTTCTTGTTCATCAAAAAAAAAAAAAAAAAAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0320M09-0CleD/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E700161" ref_strand="+" ref_description="SGN-E700161 [FA12BC06]">
      <seq>caaaggttcctgataaagttaagttctacaacatctatgggaccaattatgagacgcctcatagtgtctgttatggaagtcagaatgcacccatttctgatcttcaacaattaccatttgtccagtctaactacatatcggttgatggagatggtacagttccaacagaatctgcaaaggctgatgggcttaaagcagaagctagggttggagtccctggggatcacagaggaatcgtctgtgaccgccacgtgtttagagtgatcaagcactggttgcgagcagatcatgatccttattacaatccaatcaacgattacgttatcctacccacttcatttgacatcgaaaggcaccatgagaaaggtttggatgtaacttctctcagaggagtgggaaattgtttcagaaagccaggatggcaaagagaatgcggatagcggaaagacaaaggtgggttctatatctgtctctcatgttggagatgacaatactacgtgggaagaagcccatgcgactcttattgtccaccctaaaagtgaaggtaagcaacatgtagagttgaatgccatgtctgtttctgcaagggcttgaaacttatattaccatatggtcaaaggggctttattgttttatatccatctgtctattcctcctgatttcttctgtatatagaaagtaattgtgctcctgaacagaaccatgtatgtatgtatatatatgtgcatattaacgttatcaagtatgtgatgtggatcaatcaaataagaaatttgatttcttgttnaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0320M09-0CleD/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0320M09.4" temp_strand="-" temp_description="C02HBa0320M09.4  AC215438.3 htgs_phase:3 submitted_to_sgn_as:C02HBa0320M09 sequenced_by:kribb upload_account_name:korea">
        <position start="113859" stop="3478"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="113559" g_stop="113490" g_length="70"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="70" r_length="70" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="113489" i_stop="113380" i_length="110">
            <donor d_prob="0.983" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="113379" g_stop="113325" g_length="55"/>
          <reference_exon_boundary r_type="cDNA" r_start="71" r_stop="125" r_length="55" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="113324" i_stop="113206" i_length="119">
            <donor d_prob="0.975" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="113205" g_stop="113152" g_length="54"/>
          <reference_exon_boundary r_type="cDNA" r_start="126" r_stop="179" r_length="54" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="113151" i_stop="112194" i_length="958">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="112193" g_stop="111565" g_length="629"/>
          <reference_exon_boundary r_type="cDNA" r_start="180" r_stop="806" r_length="627" r_score="0.973"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0320M09.4" gen_strand="-" ref_id="SGN-E700161" ref_strand="+">
        <total_alignment_score>0.979</total_alignment_score>
        <cumulative_length_of_scored_exons>808</cumulative_length_of_scored_exons>
        <coverage percentage="1.002" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0320M09.4" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E700161" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="113559" e_stop="113490"/>
          <exon e_start="113379" e_stop="113325"/>
          <exon e_start="113205" e_stop="113152"/>
          <exon e_start="112193" e_stop="111565"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAAAGGTTCCTGATAAAGTTAAGTTCTACAACATCTATGGGACCAATTATGAGACGCCTCATAGTGTCTGGTACTAATTCTTTCTTAAATATTTGGATATCAATTTTACTTGTCTGATGATGGATACTGTTTATAGTTCTAATTCATGAGAATATGGTAACTGAATTGGCTTCTTTGCAGTTATGGAAGTCAGAATGCACCCATTTCTGATCTTCAACAATTACCATTTGTCCAGGTAACATTGTTTTATTTGACTTTGGACTGGTCTGACTGGATTCTGAATTATGTATTTTCATTTCTTCCTTGTCTTATACCACTGGTCTCTCTGACTATCATTTTTATGCATATTCACAGTCTAACTACATATCGGTTGATGGAGATGGTACAGTTCCAACAGAATCTGCAAAGGTATATGCTCTACATTTTGCCTCATGTGATCGTGATATGAATCTTTTTTTAGTTACATATCTAGAGAGATCTTTAATAATACTTTAGACCATTTTGTATGTTCTCTTGCCAAATTGGAACCAATGTATCATAAGAGTGCGGTATGTGTTGCTTTTAAGTTTAAAGGCATCACGCTTCATTTCTTGACTAGTGTTATATTTTGCTTGAACTTGGGATGTAGTAGGGGGAGACTGGAAGAGAAGGAAAGCCTAAAGCACATACTTGGTTATAACAGATTCCTTAGCCTAGGTCCTTCCATTTATTCTTAACATGTTGTGTTTAGGGTTAATTTGCAGTACAAACATTTCTTATCTTTATCATGCTTGCCTCTCTAAATTGCTCTTACTATTAAAGATGTTAATTTGCACAAGATCTTGGCTTTTAGTTATATGCCCAGTTACATCTTTAAAGTTGTTCATCTTTAGATCTGTCTTGTGTTGTTTTCTCTTGTATCTTTTCATTTCCTGCTTGTAGATGTTGGAATCTCACCAACATTCATTTTGAGCAAGTGCTCTGCTGAAAACCAAGTACCTTCAGGGACCAGGGTTTTGTTTGCTTTTAATTTCTGGTAATGTTAGAAAAAAAAAAGCATTCAGATAGTGAGGTTCTTACCAAGAAGATGTGGATTCTTGGTGATTTCTTTGGTGCCTCAGAAGTTTGAGCCAAAGCTGTTTAAGGGCTGCCAGCACAATGTTCCTGTTGAATAGGAGAAAAAAATGGAAGTAATTAAAAAAAGAAAAAATTTGAAACTGTGCCTACCGTAGTATTTTTCTGCTAAATTACCCTGCACACTAATGTGATTAGTGATTGTTTACTCTGCTACTATAGCTATCTGATCCTGAAAATTGTTAAAAATTATATGGTTTGATGTGCTATCCTTCTCAAGAAATATGGTTCAATATACGATACTTTCTGGCAGGCTGATGGGCTTAAAGCAGAAGCTAGGGTTGGAGTCCCTGGGGATCACAGAGGAATCGTCTGTGACCGCCACGTGTTTAGAGTGATCAAGCACTGGTTGCGAGCAGATCATGATCCTTATTACAATCCAATCAACGATTACGTTATCCTACCCACTTCATTTGACATCGAAAGGCACCATGAGAAAGGTTTGGATGTAACTTCTCTCAGAGAGGAGTGGGAAATTGTTTCAGAAAGCCAGGATGGCAAAGAGAATGCGGATAGCGGAAAGACAAAGGTGGGTTCTATATCTGTCTCTCATGTTGGAGATGACAATACTACGTGGGAAGAAGCCCATGCGACTCTTATTGTCCACCCTAAAAGTGAAGGTAAGCAACATGTAGAGTTGAATGCCATGTCTGTTTCTGCAAGGGCTTGAAACTTATATTACCATATGGTCAAAGGGGCTTTATTGTTTTATATCCATCTGTCTATTCCTCCTGATTTCTTCTGTATATAGAAAGTAATTGTGCTCCTGAACAGAACCATGTATGTATGTATATATATGTGCATATTAACGTTATCAAGTATGTGATGTGGATCAATCAAATAAGAAATTTGATTTCTTGTTCATCACTTGTTACTTTATAT</genome_strand>
        <mrna_strand>CAAAGGTTCCTGATAAAGTTAAGTTCTACAACATCTATGGGACCAATTATGAGACGCCTCATAGTGTCTG..............................................................................................................TTATGGAAGTCAGAATGCACCCATTTCTGATCTTCAACAATTACCATTTGTCCAG.......................................................................................................................TCTAACTACATATCGGTTGATGGAGATGGTACAGTTCCAACAGAATCTGCAAAG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCTGATGGGCTTAAAGCAGAAGCTAGGGTTGGAGTCCCTGGGGATCACAGAGGAATCGTCTGTGACCGCCACGTGTTTAGAGTGATCAAGCACTGGTTGCGAGCAGATCATGATCCTTATTACAATCCAATCAACGATTACGTTATCCTACCCACTTCATTTGACATCGAAAGGCACCATGAGAAAGGTTTGGATGTAACTTCTCTC--AGAGGAGTGGGAAATTGTTTCAGAAAGCCAGGATGGCAAAGAGAATGCGGATAGCGGAAAGACAAAGGTGGGTTCTATATCTGTCTCTCATGTTGGAGATGACAATACTACGTGGGAAGAAGCCCATGCGACTCTTATTGTCCACCCTAAAAGTGAAGGTAAGCAACATGTAGAGTTGAATGCCATGTCTGTTTCTGCAAGGGCTTGAAACTTATATTACCATATGGTCAAAGGGGCTTTATTGTTTTATATCCATCTGTCTATTCCTCCTGATTTCTTCTGTATATAGAAAGTAATTGTGCTCCTGAACAGAACCATGTATGTATGTATATATATGTGCATATTAACGTTATCAAGTATGTGATGTGGATCAATCAAATAAGAAATTTGATTTCTTGTTNAAAAAAAAAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0320M09-0CleD/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E699605" ref_strand="+" ref_description="SGN-E699605 [FA10CF05]">
      <seq>gctatagctgcaccattccaaggtgctcctggatatattacctcttcattattgaacggaacatcatttgtgcatggatgggaagagaggtttttcatatccaaatggagtatgcatcaactgttgatcgagtgtccgtcaatatatgaattaatggggtgtcctgatttccactgggagcatgcaccagttctagaaatttggaaggaaaaatctaacagtaatggagagtcctccgttgtactcgagtcttactctccactggaagctgtatcagtgtatgagttagctcttgcaaacaacaaggttacttataatggagaaaaaatttctctgccgttcaatctggaactcttgaaatgggctaataagacccgagagatattgtgccatgcaaaggttcctgataaagttaagttctacaacatctatgggaccaattatgagacgcctcatagtgtctgttatggaagtcagaatgcacccatttctgatcttcaacaattaccatttgtccagtctaactacatatcggttgatggagatggtacagttccaacagaatctgcaaaggctgatgggcttaaagcagaagctagggttggagtccctggggatcacagaggaatcgtctgtgaccgccacgtgtttagagtgatcaagcactggttgcgagcagatcatgatccttattacaatccaatcaacgattacgttatcctacccacttcatttgacatcgaaaggcaccatgaaaaaggtttggatgtaac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0320M09-0CleD/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0320M09.4" temp_strand="-" temp_description="C02HBa0320M09.4  AC215438.3 htgs_phase:3 submitted_to_sgn_as:C02HBa0320M09 sequenced_by:kribb upload_account_name:korea">
        <position start="116329" stop="111694"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="116029" g_stop="116008" g_length="22"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="22" r_length="22" r_score="0.955"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="116007" i_stop="114715" i_length="1293">
            <donor d_prob="0.986" d_score="0.00"/>
            <acceptor a_prob="0.942" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="114714" g_stop="114614" g_length="101"/>
          <reference_exon_boundary r_type="cDNA" r_start="23" r_stop="123" r_length="101" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="114613" i_stop="114066" i_length="548">
            <donor d_prob="0.942" d_score="1.00"/>
            <acceptor a_prob="0.971" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="114065" g_stop="113883" g_length="183"/>
          <reference_exon_boundary r_type="cDNA" r_start="124" r_stop="306" r_length="183" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="113882" i_stop="113648" i_length="235">
            <donor d_prob="0.993" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="113647" g_stop="113490" g_length="158"/>
          <reference_exon_boundary r_type="cDNA" r_start="307" r_stop="464" r_length="158" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="113489" i_stop="113380" i_length="110">
            <donor d_prob="0.983" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="113379" g_stop="113325" g_length="55"/>
          <reference_exon_boundary r_type="cDNA" r_start="465" r_stop="519" r_length="55" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="113324" i_stop="113206" i_length="119">
            <donor d_prob="0.975" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="113205" g_stop="113152" g_length="54"/>
          <reference_exon_boundary r_type="cDNA" r_start="520" r_stop="573" r_length="54" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="113151" i_stop="112194" i_length="958">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="112193" g_stop="111994" g_length="200"/>
          <reference_exon_boundary r_type="cDNA" r_start="574" r_stop="773" r_length="200" r_score="0.995"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0320M09.4" gen_strand="-" ref_id="SGN-E699605" ref_strand="+">
        <total_alignment_score>0.999</total_alignment_score>
        <cumulative_length_of_scored_exons>773</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0320M09.4" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E699605" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="116029" e_stop="116008"/>
          <exon e_start="114714" e_stop="114614"/>
          <exon e_start="114065" e_stop="113883"/>
          <exon e_start="113647" e_stop="113490"/>
          <exon e_start="113379" e_stop="113325"/>
          <exon e_start="113205" e_stop="113152"/>
          <exon e_start="112193" e_stop="111994"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCAATAGCTGCACCATTCCAAGGTAAGCAGCTCTTTTGTCATTTCAAGTAAGCTGCATGGTATCCCAATGATGTCTCCACTAATATGGGAAGGAGGGAGTTTTTTTCGATTTTAAATTTCTCGTTTAGTTTTTCTTAAAAAAAAAATCTTAATTTTAGCTTACAAAAGATACAAGTTTAAATTTATGTAAATCTATATGCCTAATTTCGTGTATGAATTATCTTTTGGCATGGTTGTGTAACTGTCTATAGAATGAGAAGAAGACTTATCGACATTGATTAGCAAAGAACGATGATGTAACGACATAAAAGTAATAATATTTTTCAGTATTACTTATAAAAAAGAAAAGGTAATCATATTTGCATATTGAGGCCAAACGCTATGCTGTCTAGTAAACCGGTATGCAATAGTCTATAAGTTCAAGCTTTGAAGGCTCAGCCATTGAAACAGTTCTTGATAAATAGGTGAGATTGGTAAATGATACTCAAGTAATGACTTATCTTAATTCCGTCTGCTTGATGTAGCTTAATCTTCTAGTAAGTTTATATGTCATCCTTGTTGAGTAAGGTATTCTAACATGTAATAAGGCCTTAGGCTATCACAGGAAAGATATTGGCAAGACTACAGTACTTGAGAGCTCGAAAGCATACCTATAGGCTTAATTTTGAACATAATCGAAATTAACCCAAAAGAAAATTGAAGAAAAGGATATTATATGTAACAGATCTTGCTTTTGATATTTAAATATTTGGAGGCAAACATTCTAATAGACTTAATTATGTTTTCCATGAACGTCTATGAACAGTTGAGGCAAACACAGTCTAATAGAGTTAATTATGTGTTCTATGAATAACTAGACAGTATTGTACAGAAAGCACAGGTTGTATGGTACTATGATTTCAAATTGAGCTTAAATATCTAATTTTGATCTGTCTCAGAATGTTTCTACTGTTTCTTTACTTTTACCCTTACCCTTTAGAATGGTAGCTTTTCAGGATACTGATTGTAGGAGAATCTACATTTTGTATAATTATGATGTTATCGATTTGGTGTGGAACCTTGGATCTGCAAGGGATAATATCTAATCTTGTAGGCTATGGTTTTGGAATTAATATCCGTGATTTTATTTCTTAAATTCTTACATTCCAAATTATTGCAACTTTATTCCTCTGTCCCCTTGTTTTGTCCTTCTCTCTGACATTAAGCTAAGATCAATTAGTGGTGCCGGCATGGTTTGTGGTGTTCTTTTGTGTCTTACGGATTTTAATTTGATATTCTGATTGATGCGATCCGTCTGTGGTTGATCACGTTACAGGTGCTCCTGGATATATTACCTCTTCATTATTGAACGGAACATCATTTGTGCATGGATGGGAAGAGAGGTTTTTCATATCCAAATGGAGTATGCATCAACTGGTTTGTGTTTCAACTCCACTTGAATTGCACTATGATCTATTCTCCCTTTTCTGTCTTCCCTCCTTCCATTTGCATACTTTGTTATCTAGATTTCTTGCACTATTTTGTTAGACAGTGCTTAGTTCTGTGTCATTTGTGCATAGTCATTTTTTCTTCGTTGTTTCTGCTATCTTGTTGAAATTTGTGTCTAGATTATTGTATATGTTGGTCAATCTAAAACAGTAATTAATGATAGGAAGTGGCACGGTTTTGCATATTTTTGGAGGCTCTATGTTTCTTATATCATTAATCCACAGTGTTACTCATACATTCATAGGGGTCTTTTGTTGATAATATGTTCTCCATTCTGGTTTTAAGTGTGCCATTTGTCTTTTTCTTGGATAGTTTCTTTGATATCTATTTATTGGTTAGACTTCAGTTACATATTAAAGCATCCATTATAGGGAATTTGTCTAGCAATATGGACAGGAGGCTTGTTCGTTTGTAATTTTGTCAGCAAAAATTACTTTCTTTGATAGATCAATTACATCTGATATTTGGTCTTGCAGTTGATCGAGTGTCCGTCAATATATGAATTAATGGGGTGTCCTGATTTCCACTGGGAGCATGCACCAGTTCTAGAAATTTGGAAGGAAAAATCTAACAGTAATGGAGAGTCCTCCGTTGTACTCGAGTCTTACTCTCCACTGGAAGCTGTATCAGTGTATGAGTTAGCTCTTGCAAACAACAAGGTGAGCTGGCCATGGAATAGAATGTCACAATTTATACTGAAAAGCTGGTTTTCATGAGGTCTCCTCATTGTATGGCTTCTGGATAGGTCATAGACTTTTCATTGAAGTAAAATGAATTTCCTTTTTCCCCTATCTTGAGCTGTCTGTATATTGACTTGAACCATACACATTATTGTTGTTTCATCTCTTTGGAAGTTGAACGTCAACTATAAAATTCATTTATCCGTCTTTGCAGGTTACTTATAATGGAGAAAAAATTTCTCTGCCGTTCAATCTGGAACTCTTGAAATGGGCTAATAAGACCCGAGAGATATTGTGCCATGCAAAGGTTCCTGATAAAGTTAAGTTCTACAACATCTATGGGACCAATTATGAGACGCCTCATAGTGTCTGGTACTAATTCTTTCTTAAATATTTGGATATCAATTTTACTTGTCTGATGATGGATACTGTTTATAGTTCTAATTCATGAGAATATGGTAACTGAATTGGCTTCTTTGCAGTTATGGAAGTCAGAATGCACCCATTTCTGATCTTCAACAATTACCATTTGTCCAGGTAACATTGTTTTATTTGACTTTGGACTGGTCTGACTGGATTCTGAATTATGTATTTTCATTTCTTCCTTGTCTTATACCACTGGTCTCTCTGACTATCATTTTTATGCATATTCACAGTCTAACTACATATCGGTTGATGGAGATGGTACAGTTCCAACAGAATCTGCAAAGGTATATGCTCTACATTTTGCCTCATGTGATCGTGATATGAATCTTTTTTTAGTTACATATCTAGAGAGATCTTTAATAATACTTTAGACCATTTTGTATGTTCTCTTGCCAAATTGGAACCAATGTATCATAAGAGTGCGGTATGTGTTGCTTTTAAGTTTAAAGGCATCACGCTTCATTTCTTGACTAGTGTTATATTTTGCTTGAACTTGGGATGTAGTAGGGGGAGACTGGAAGAGAAGGAAAGCCTAAAGCACATACTTGGTTATAACAGATTCCTTAGCCTAGGTCCTTCCATTTATTCTTAACATGTTGTGTTTAGGGTTAATTTGCAGTACAAACATTTCTTATCTTTATCATGCTTGCCTCTCTAAATTGCTCTTACTATTAAAGATGTTAATTTGCACAAGATCTTGGCTTTTAGTTATATGCCCAGTTACATCTTTAAAGTTGTTCATCTTTAGATCTGTCTTGTGTTGTTTTCTCTTGTATCTTTTCATTTCCTGCTTGTAGATGTTGGAATCTCACCAACATTCATTTTGAGCAAGTGCTCTGCTGAAAACCAAGTACCTTCAGGGACCAGGGTTTTGTTTGCTTTTAATTTCTGGTAATGTTAGAAAAAAAAAAGCATTCAGATAGTGAGGTTCTTACCAAGAAGATGTGGATTCTTGGTGATTTCTTTGGTGCCTCAGAAGTTTGAGCCAAAGCTGTTTAAGGGCTGCCAGCACAATGTTCCTGTTGAATAGGAGAAAAAAATGGAAGTAATTAAAAAAAGAAAAAATTTGAAACTGTGCCTACCGTAGTATTTTTCTGCTAAATTACCCTGCACACTAATGTGATTAGTGATTGTTTACTCTGCTACTATAGCTATCTGATCCTGAAAATTGTTAAAAATTATATGGTTTGATGTGCTATCCTTCTCAAGAAATATGGTTCAATATACGATACTTTCTGGCAGGCTGATGGGCTTAAAGCAGAAGCTAGGGTTGGAGTCCCTGGGGATCACAGAGGAATCGTCTGTGACCGCCACGTGTTTAGAGTGATCAAGCACTGGTTGCGAGCAGATCATGATCCTTATTACAATCCAATCAACGATTACGTTATCCTACCCACTTCATTTGACATCGAAAGGCACCATGAGAAAGGTTTGGATGTAAC</genome_strand>
        <mrna_strand>GCTATAGCTGCACCATTCCAAG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGCTCCTGGATATATTACCTCTTCATTATTGAACGGAACATCATTTGTGCATGGATGGGAAGAGAGGTTTTTCATATCCAAATGGAGTATGCATCAACTG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTGATCGAGTGTCCGTCAATATATGAATTAATGGGGTGTCCTGATTTCCACTGGGAGCATGCACCAGTTCTAGAAATTTGGAAGGAAAAATCTAACAGTAATGGAGAGTCCTCCGTTGTACTCGAGTCTTACTCTCCACTGGAAGCTGTATCAGTGTATGAGTTAGCTCTTGCAAACAACAAG...........................................................................................................................................................................................................................................GTTACTTATAATGGAGAAAAAATTTCTCTGCCGTTCAATCTGGAACTCTTGAAATGGGCTAATAAGACCCGAGAGATATTGTGCCATGCAAAGGTTCCTGATAAAGTTAAGTTCTACAACATCTATGGGACCAATTATGAGACGCCTCATAGTGTCTG..............................................................................................................TTATGGAAGTCAGAATGCACCCATTTCTGATCTTCAACAATTACCATTTGTCCAG.......................................................................................................................TCTAACTACATATCGGTTGATGGAGATGGTACAGTTCCAACAGAATCTGCAAAG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCTGATGGGCTTAAAGCAGAAGCTAGGGTTGGAGTCCCTGGGGATCACAGAGGAATCGTCTGTGACCGCCACGTGTTTAGAGTGATCAAGCACTGGTTGCGAGCAGATCATGATCCTTATTACAATCCAATCAACGATTACGTTATCCTACCCACTTCATTTGACATCGAAAGGCACCATGAAAAAGGTTTGGATGTAAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0320M09-0CleD/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E327971" ref_strand="+" ref_description="SGN-E327971 [cTOC-22-J2]">
      <seq>ttacctcttcattattgaacggaacatcatttgtgcatggatgggaagagaggtttttcatatccaaatggagtatgcatcaactgttgatcgagtgtccgtcaatatatgaattaatggggtgtcctgatttccactgggagcatgcaccagttctagaaatttggaaggaaaaatctaacagtaatggagagtcctccgttgtactcgagtcttactctccactggaagctgtatcagtgtatgagttagctcttgcaaacaacaaggttacttataatggagaaaaaatttctctgccgttcaatctggaactcttgaaatgggctaataagacccgagagatattgtgccatgcaaaggttcctgataaagttaagttctacaacatctatgggaccaattatgagacgcctcatagtgtctgttatggaagtcagaatgcacccatttctgatcttcaacaattaccatttgtccagtctaactacatatcggttgatggagatggtacagttccaacagaatctgcaaaggctgatgggcttaaagcagaagctagggttggagtccct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0320M09-0CleD/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0320M09.4" temp_strand="-" temp_description="C02HBa0320M09.4  AC215438.3 htgs_phase:3 submitted_to_sgn_as:C02HBa0320M09 sequenced_by:kribb upload_account_name:korea">
        <position start="114999" stop="111855"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="114699" g_stop="114614" g_length="86"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="86" r_length="86" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="114613" i_stop="114066" i_length="548">
            <donor d_prob="0.942" d_score="1.00"/>
            <acceptor a_prob="0.971" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="114065" g_stop="113883" g_length="183"/>
          <reference_exon_boundary r_type="cDNA" r_start="87" r_stop="269" r_length="183" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="113882" i_stop="113648" i_length="235">
            <donor d_prob="0.993" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="113647" g_stop="113490" g_length="158"/>
          <reference_exon_boundary r_type="cDNA" r_start="270" r_stop="427" r_length="158" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="113489" i_stop="113380" i_length="110">
            <donor d_prob="0.983" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="113379" g_stop="113325" g_length="55"/>
          <reference_exon_boundary r_type="cDNA" r_start="428" r_stop="482" r_length="55" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="113324" i_stop="113206" i_length="119">
            <donor d_prob="0.975" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="113205" g_stop="113152" g_length="54"/>
          <reference_exon_boundary r_type="cDNA" r_start="483" r_stop="536" r_length="54" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="113151" i_stop="112194" i_length="958">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="112193" g_stop="112155" g_length="39"/>
          <reference_exon_boundary r_type="cDNA" r_start="537" r_stop="575" r_length="39" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0320M09.4" gen_strand="-" ref_id="SGN-E327971" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>575</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0320M09.4" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E327971" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="114699" e_stop="114614"/>
          <exon e_start="114065" e_stop="113883"/>
          <exon e_start="113647" e_stop="113490"/>
          <exon e_start="113379" e_stop="113325"/>
          <exon e_start="113205" e_stop="113152"/>
          <exon e_start="112193" e_stop="112155"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTACCTCTTCATTATTGAACGGAACATCATTTGTGCATGGATGGGAAGAGAGGTTTTTCATATCCAAATGGAGTATGCATCAACTGGTTTGTGTTTCAACTCCACTTGAATTGCACTATGATCTATTCTCCCTTTTCTGTCTTCCCTCCTTCCATTTGCATACTTTGTTATCTAGATTTCTTGCACTATTTTGTTAGACAGTGCTTAGTTCTGTGTCATTTGTGCATAGTCATTTTTTCTTCGTTGTTTCTGCTATCTTGTTGAAATTTGTGTCTAGATTATTGTATATGTTGGTCAATCTAAAACAGTAATTAATGATAGGAAGTGGCACGGTTTTGCATATTTTTGGAGGCTCTATGTTTCTTATATCATTAATCCACAGTGTTACTCATACATTCATAGGGGTCTTTTGTTGATAATATGTTCTCCATTCTGGTTTTAAGTGTGCCATTTGTCTTTTTCTTGGATAGTTTCTTTGATATCTATTTATTGGTTAGACTTCAGTTACATATTAAAGCATCCATTATAGGGAATTTGTCTAGCAATATGGACAGGAGGCTTGTTCGTTTGTAATTTTGTCAGCAAAAATTACTTTCTTTGATAGATCAATTACATCTGATATTTGGTCTTGCAGTTGATCGAGTGTCCGTCAATATATGAATTAATGGGGTGTCCTGATTTCCACTGGGAGCATGCACCAGTTCTAGAAATTTGGAAGGAAAAATCTAACAGTAATGGAGAGTCCTCCGTTGTACTCGAGTCTTACTCTCCACTGGAAGCTGTATCAGTGTATGAGTTAGCTCTTGCAAACAACAAGGTGAGCTGGCCATGGAATAGAATGTCACAATTTATACTGAAAAGCTGGTTTTCATGAGGTCTCCTCATTGTATGGCTTCTGGATAGGTCATAGACTTTTCATTGAAGTAAAATGAATTTCCTTTTTCCCCTATCTTGAGCTGTCTGTATATTGACTTGAACCATACACATTATTGTTGTTTCATCTCTTTGGAAGTTGAACGTCAACTATAAAATTCATTTATCCGTCTTTGCAGGTTACTTATAATGGAGAAAAAATTTCTCTGCCGTTCAATCTGGAACTCTTGAAATGGGCTAATAAGACCCGAGAGATATTGTGCCATGCAAAGGTTCCTGATAAAGTTAAGTTCTACAACATCTATGGGACCAATTATGAGACGCCTCATAGTGTCTGGTACTAATTCTTTCTTAAATATTTGGATATCAATTTTACTTGTCTGATGATGGATACTGTTTATAGTTCTAATTCATGAGAATATGGTAACTGAATTGGCTTCTTTGCAGTTATGGAAGTCAGAATGCACCCATTTCTGATCTTCAACAATTACCATTTGTCCAGGTAACATTGTTTTATTTGACTTTGGACTGGTCTGACTGGATTCTGAATTATGTATTTTCATTTCTTCCTTGTCTTATACCACTGGTCTCTCTGACTATCATTTTTATGCATATTCACAGTCTAACTACATATCGGTTGATGGAGATGGTACAGTTCCAACAGAATCTGCAAAGGTATATGCTCTACATTTTGCCTCATGTGATCGTGATATGAATCTTTTTTTAGTTACATATCTAGAGAGATCTTTAATAATACTTTAGACCATTTTGTATGTTCTCTTGCCAAATTGGAACCAATGTATCATAAGAGTGCGGTATGTGTTGCTTTTAAGTTTAAAGGCATCACGCTTCATTTCTTGACTAGTGTTATATTTTGCTTGAACTTGGGATGTAGTAGGGGGAGACTGGAAGAGAAGGAAAGCCTAAAGCACATACTTGGTTATAACAGATTCCTTAGCCTAGGTCCTTCCATTTATTCTTAACATGTTGTGTTTAGGGTTAATTTGCAGTACAAACATTTCTTATCTTTATCATGCTTGCCTCTCTAAATTGCTCTTACTATTAAAGATGTTAATTTGCACAAGATCTTGGCTTTTAGTTATATGCCCAGTTACATCTTTAAAGTTGTTCATCTTTAGATCTGTCTTGTGTTGTTTTCTCTTGTATCTTTTCATTTCCTGCTTGTAGATGTTGGAATCTCACCAACATTCATTTTGAGCAAGTGCTCTGCTGAAAACCAAGTACCTTCAGGGACCAGGGTTTTGTTTGCTTTTAATTTCTGGTAATGTTAGAAAAAAAAAAGCATTCAGATAGTGAGGTTCTTACCAAGAAGATGTGGATTCTTGGTGATTTCTTTGGTGCCTCAGAAGTTTGAGCCAAAGCTGTTTAAGGGCTGCCAGCACAATGTTCCTGTTGAATAGGAGAAAAAAATGGAAGTAATTAAAAAAAGAAAAAATTTGAAACTGTGCCTACCGTAGTATTTTTCTGCTAAATTACCCTGCACACTAATGTGATTAGTGATTGTTTACTCTGCTACTATAGCTATCTGATCCTGAAAATTGTTAAAAATTATATGGTTTGATGTGCTATCCTTCTCAAGAAATATGGTTCAATATACGATACTTTCTGGCAGGCTGATGGGCTTAAAGCAGAAGCTAGGGTTGGAGTCCCT</genome_strand>
        <mrna_strand>TTACCTCTTCATTATTGAACGGAACATCATTTGTGCATGGATGGGAAGAGAGGTTTTTCATATCCAAATGGAGTATGCATCAACTG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTGATCGAGTGTCCGTCAATATATGAATTAATGGGGTGTCCTGATTTCCACTGGGAGCATGCACCAGTTCTAGAAATTTGGAAGGAAAAATCTAACAGTAATGGAGAGTCCTCCGTTGTACTCGAGTCTTACTCTCCACTGGAAGCTGTATCAGTGTATGAGTTAGCTCTTGCAAACAACAAG...........................................................................................................................................................................................................................................GTTACTTATAATGGAGAAAAAATTTCTCTGCCGTTCAATCTGGAACTCTTGAAATGGGCTAATAAGACCCGAGAGATATTGTGCCATGCAAAGGTTCCTGATAAAGTTAAGTTCTACAACATCTATGGGACCAATTATGAGACGCCTCATAGTGTCTG..............................................................................................................TTATGGAAGTCAGAATGCACCCATTTCTGATCTTCAACAATTACCATTTGTCCAG.......................................................................................................................TCTAACTACATATCGGTTGATGGAGATGGTACAGTTCCAACAGAATCTGCAAAG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCTGATGGGCTTAAAGCAGAAGCTAGGGTTGGAGTCCCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0320M09-0CleD/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E328400" ref_strand="+" ref_description="SGN-E328400 [cTOC-21-D15]">
      <seq>ttacctcttcattattgaacggaacatcatttgtgcatggatgggaagagaggtttttcatatccaaatggagtatgcatcaactgttgatcgagtgtccgtcaatatatgaattaatggggtgtcctgatttccactgggagcatgcaccagttctagaaatttggaaggaaaaatctaacagtaatggagagtcctccgttgtactcgagtcttactctccactggaagctgtatcagtgtatgagttagctcttgcaaacaacaaggttacttataatggagaaaaaatttctctgccgttcaatctggaactcttgaaatgggctaataagacccgagagatattgtgccatgcaaaggttcctgataaagttaagttctacaacatctatgggaccaattatgagacgcctcatagtgtctgttatggaagtcagaatgcacccatttctgatcttcaacaattaccatttgtccagtctaactacatatcggttgatggagatggtacagtttcaacagaatctgcaaaggctgatgggcttaaag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0320M09-0CleD/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0320M09.4" temp_strand="-" temp_description="C02HBa0320M09.4  AC215438.3 htgs_phase:3 submitted_to_sgn_as:C02HBa0320M09 sequenced_by:kribb upload_account_name:korea">
        <position start="114999" stop="112838"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="114699" g_stop="114614" g_length="86"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="86" r_length="86" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="114613" i_stop="114066" i_length="548">
            <donor d_prob="0.942" d_score="1.00"/>
            <acceptor a_prob="0.971" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="114065" g_stop="113883" g_length="183"/>
          <reference_exon_boundary r_type="cDNA" r_start="87" r_stop="269" r_length="183" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="113882" i_stop="113648" i_length="235">
            <donor d_prob="0.993" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="113647" g_stop="113490" g_length="158"/>
          <reference_exon_boundary r_type="cDNA" r_start="270" r_stop="427" r_length="158" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="113489" i_stop="113380" i_length="110">
            <donor d_prob="0.983" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="113379" g_stop="113325" g_length="55"/>
          <reference_exon_boundary r_type="cDNA" r_start="428" r_stop="482" r_length="55" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="113324" i_stop="113206" i_length="119">
            <donor d_prob="0.975" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="113205" g_stop="113152" g_length="54"/>
          <reference_exon_boundary r_type="cDNA" r_start="483" r_stop="536" r_length="54" r_score="0.981"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0320M09.4" gen_strand="-" ref_id="SGN-E328400" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>536</cumulative_length_of_scored_exons>
        <coverage percentage="0.971" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0320M09.4" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E328400" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="114699" e_stop="114614"/>
          <exon e_start="114065" e_stop="113883"/>
          <exon e_start="113647" e_stop="113490"/>
          <exon e_start="113379" e_stop="113325"/>
          <exon e_start="113205" e_stop="113152"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTACCTCTTCATTATTGAACGGAACATCATTTGTGCATGGATGGGAAGAGAGGTTTTTCATATCCAAATGGAGTATGCATCAACTGGTTTGTGTTTCAACTCCACTTGAATTGCACTATGATCTATTCTCCCTTTTCTGTCTTCCCTCCTTCCATTTGCATACTTTGTTATCTAGATTTCTTGCACTATTTTGTTAGACAGTGCTTAGTTCTGTGTCATTTGTGCATAGTCATTTTTTCTTCGTTGTTTCTGCTATCTTGTTGAAATTTGTGTCTAGATTATTGTATATGTTGGTCAATCTAAAACAGTAATTAATGATAGGAAGTGGCACGGTTTTGCATATTTTTGGAGGCTCTATGTTTCTTATATCATTAATCCACAGTGTTACTCATACATTCATAGGGGTCTTTTGTTGATAATATGTTCTCCATTCTGGTTTTAAGTGTGCCATTTGTCTTTTTCTTGGATAGTTTCTTTGATATCTATTTATTGGTTAGACTTCAGTTACATATTAAAGCATCCATTATAGGGAATTTGTCTAGCAATATGGACAGGAGGCTTGTTCGTTTGTAATTTTGTCAGCAAAAATTACTTTCTTTGATAGATCAATTACATCTGATATTTGGTCTTGCAGTTGATCGAGTGTCCGTCAATATATGAATTAATGGGGTGTCCTGATTTCCACTGGGAGCATGCACCAGTTCTAGAAATTTGGAAGGAAAAATCTAACAGTAATGGAGAGTCCTCCGTTGTACTCGAGTCTTACTCTCCACTGGAAGCTGTATCAGTGTATGAGTTAGCTCTTGCAAACAACAAGGTGAGCTGGCCATGGAATAGAATGTCACAATTTATACTGAAAAGCTGGTTTTCATGAGGTCTCCTCATTGTATGGCTTCTGGATAGGTCATAGACTTTTCATTGAAGTAAAATGAATTTCCTTTTTCCCCTATCTTGAGCTGTCTGTATATTGACTTGAACCATACACATTATTGTTGTTTCATCTCTTTGGAAGTTGAACGTCAACTATAAAATTCATTTATCCGTCTTTGCAGGTTACTTATAATGGAGAAAAAATTTCTCTGCCGTTCAATCTGGAACTCTTGAAATGGGCTAATAAGACCCGAGAGATATTGTGCCATGCAAAGGTTCCTGATAAAGTTAAGTTCTACAACATCTATGGGACCAATTATGAGACGCCTCATAGTGTCTGGTACTAATTCTTTCTTAAATATTTGGATATCAATTTTACTTGTCTGATGATGGATACTGTTTATAGTTCTAATTCATGAGAATATGGTAACTGAATTGGCTTCTTTGCAGTTATGGAAGTCAGAATGCACCCATTTCTGATCTTCAACAATTACCATTTGTCCAGGTAACATTGTTTTATTTGACTTTGGACTGGTCTGACTGGATTCTGAATTATGTATTTTCATTTCTTCCTTGTCTTATACCACTGGTCTCTCTGACTATCATTTTTATGCATATTCACAGTCTAACTACATATCGGTTGATGGAGATGGTACAGTTCCAACAGAATCTGCAAAG</genome_strand>
        <mrna_strand>TTACCTCTTCATTATTGAACGGAACATCATTTGTGCATGGATGGGAAGAGAGGTTTTTCATATCCAAATGGAGTATGCATCAACTG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTGATCGAGTGTCCGTCAATATATGAATTAATGGGGTGTCCTGATTTCCACTGGGAGCATGCACCAGTTCTAGAAATTTGGAAGGAAAAATCTAACAGTAATGGAGAGTCCTCCGTTGTACTCGAGTCTTACTCTCCACTGGAAGCTGTATCAGTGTATGAGTTAGCTCTTGCAAACAACAAG...........................................................................................................................................................................................................................................GTTACTTATAATGGAGAAAAAATTTCTCTGCCGTTCAATCTGGAACTCTTGAAATGGGCTAATAAGACCCGAGAGATATTGTGCCATGCAAAGGTTCCTGATAAAGTTAAGTTCTACAACATCTATGGGACCAATTATGAGACGCCTCATAGTGTCTG..............................................................................................................TTATGGAAGTCAGAATGCACCCATTTCTGATCTTCAACAATTACCATTTGTCCAG.......................................................................................................................TCTAACTACATATCGGTTGATGGAGATGGTACAGTTTCAACAGAATCTGCAAAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0320M09-0CleD/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E213857" ref_strand="+" ref_description="SGN-E213857 [cLEC-76-N19]">
      <seq>atccatacatactgcgtcaggaggcaagaagataaacattataagtcattctatgggtggtcttctggttaaatgtttcatggctctccacagtgatatttttgaaaaatatgtgaagaattggattgcaatagctgcaccattccaaggtgctcctggatatattacctcttcattattgaacggaacatcatttgtgcatggatgggaagagaggtttttcatatccaaatggagtatgcatcaactgttgatcgagtgtccgtcaatatatgaattaatggggtgtcctgatttccactgggagcatgcaccagttctagaaatttggaaggaaaaatctaacagtaatggagagtcctccgttgtactcgagtcttactctccactggaagctgtatcagtgtatgagttagctcttgcaaacaacaaggttacttataatggagaaaaaatttctctgccgttcaatctggaactcttgaaatgggctaataagacccgagagatattgtgccatgcaaaggttcctgatnaagttaagttctacaacatctatgggaccaattatgagacgcctcatagtgtctgttatggaagtcagaatgcacccatttctgatcttcaacaattaccatttgtccagtctaact</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0320M09-0CleD/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0320M09.4" temp_strand="-" temp_description="C02HBa0320M09.4  AC215438.3 htgs_phase:3 submitted_to_sgn_as:C02HBa0320M09 sequenced_by:kribb upload_account_name:korea">
        <position start="116609" stop="113025"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="116309" g_stop="116213" g_length="97"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="97" r_length="97" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="116212" i_stop="116060" i_length="153">
            <donor d_prob="0.937" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="116059" g_stop="116008" g_length="52"/>
          <reference_exon_boundary r_type="cDNA" r_start="98" r_stop="149" r_length="52" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="116007" i_stop="114715" i_length="1293">
            <donor d_prob="0.986" d_score="1.00"/>
            <acceptor a_prob="0.942" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="114714" g_stop="114614" g_length="101"/>
          <reference_exon_boundary r_type="cDNA" r_start="150" r_stop="250" r_length="101" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="114613" i_stop="114066" i_length="548">
            <donor d_prob="0.942" d_score="1.00"/>
            <acceptor a_prob="0.971" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="114065" g_stop="113883" g_length="183"/>
          <reference_exon_boundary r_type="cDNA" r_start="251" r_stop="433" r_length="183" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="113882" i_stop="113648" i_length="235">
            <donor d_prob="0.993" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="113647" g_stop="113490" g_length="158"/>
          <reference_exon_boundary r_type="cDNA" r_start="434" r_stop="591" r_length="158" r_score="0.994"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="113489" i_stop="113380" i_length="110">
            <donor d_prob="0.983" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="113379" g_stop="113325" g_length="55"/>
          <reference_exon_boundary r_type="cDNA" r_start="592" r_stop="646" r_length="55" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="113324" i_stop="113206" i_length="119">
            <donor d_prob="0.975" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="113205" g_stop="113199" g_length="7"/>
          <reference_exon_boundary r_type="cDNA" r_start="647" r_stop="653" r_length="7" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0320M09.4" gen_strand="-" ref_id="SGN-E213857" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>653</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0320M09.4" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E213857" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="116309" e_stop="116213"/>
          <exon e_start="116059" e_stop="116008"/>
          <exon e_start="114714" e_stop="114614"/>
          <exon e_start="114065" e_stop="113883"/>
          <exon e_start="113647" e_stop="113490"/>
          <exon e_start="113379" e_stop="113325"/>
          <exon e_start="113205" e_stop="113199"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATCCATACATACTGCGTCAGGAGGCAAGAAGATAAACATTATAAGTCATTCTATGGGTGGTCTTCTGGTTAAATGTTTCATGGCTCTCCACAGTGATGTAAAGCCTCCTCTCCCTTTCTTTTTGTATTTCTGACCTGATACATCAACTCCTAACCACTCTTCGTGGACCTACTTCACTTCCCTGACCACTCTTTTTGGCCCTAACATATTTATTTTAGTTTTAATCTTTTAATTAATGTTGTATTTGCAGATTTTTGAAAAATATGTGAAGAATTGGATTGCAATAGCTGCACCATTCCAAGGTAAGCAGCTCTTTTGTCATTTCAAGTAAGCTGCATGGTATCCCAATGATGTCTCCACTAATATGGGAAGGAGGGAGTTTTTTTCGATTTTAAATTTCTCGTTTAGTTTTTCTTAAAAAAAAAATCTTAATTTTAGCTTACAAAAGATACAAGTTTAAATTTATGTAAATCTATATGCCTAATTTCGTGTATGAATTATCTTTTGGCATGGTTGTGTAACTGTCTATAGAATGAGAAGAAGACTTATCGACATTGATTAGCAAAGAACGATGATGTAACGACATAAAAGTAATAATATTTTTCAGTATTACTTATAAAAAAGAAAAGGTAATCATATTTGCATATTGAGGCCAAACGCTATGCTGTCTAGTAAACCGGTATGCAATAGTCTATAAGTTCAAGCTTTGAAGGCTCAGCCATTGAAACAGTTCTTGATAAATAGGTGAGATTGGTAAATGATACTCAAGTAATGACTTATCTTAATTCCGTCTGCTTGATGTAGCTTAATCTTCTAGTAAGTTTATATGTCATCCTTGTTGAGTAAGGTATTCTAACATGTAATAAGGCCTTAGGCTATCACAGGAAAGATATTGGCAAGACTACAGTACTTGAGAGCTCGAAAGCATACCTATAGGCTTAATTTTGAACATAATCGAAATTAACCCAAAAGAAAATTGAAGAAAAGGATATTATATGTAACAGATCTTGCTTTTGATATTTAAATATTTGGAGGCAAACATTCTAATAGACTTAATTATGTTTTCCATGAACGTCTATGAACAGTTGAGGCAAACACAGTCTAATAGAGTTAATTATGTGTTCTATGAATAACTAGACAGTATTGTACAGAAAGCACAGGTTGTATGGTACTATGATTTCAAATTGAGCTTAAATATCTAATTTTGATCTGTCTCAGAATGTTTCTACTGTTTCTTTACTTTTACCCTTACCCTTTAGAATGGTAGCTTTTCAGGATACTGATTGTAGGAGAATCTACATTTTGTATAATTATGATGTTATCGATTTGGTGTGGAACCTTGGATCTGCAAGGGATAATATCTAATCTTGTAGGCTATGGTTTTGGAATTAATATCCGTGATTTTATTTCTTAAATTCTTACATTCCAAATTATTGCAACTTTATTCCTCTGTCCCCTTGTTTTGTCCTTCTCTCTGACATTAAGCTAAGATCAATTAGTGGTGCCGGCATGGTTTGTGGTGTTCTTTTGTGTCTTACGGATTTTAATTTGATATTCTGATTGATGCGATCCGTCTGTGGTTGATCACGTTACAGGTGCTCCTGGATATATTACCTCTTCATTATTGAACGGAACATCATTTGTGCATGGATGGGAAGAGAGGTTTTTCATATCCAAATGGAGTATGCATCAACTGGTTTGTGTTTCAACTCCACTTGAATTGCACTATGATCTATTCTCCCTTTTCTGTCTTCCCTCCTTCCATTTGCATACTTTGTTATCTAGATTTCTTGCACTATTTTGTTAGACAGTGCTTAGTTCTGTGTCATTTGTGCATAGTCATTTTTTCTTCGTTGTTTCTGCTATCTTGTTGAAATTTGTGTCTAGATTATTGTATATGTTGGTCAATCTAAAACAGTAATTAATGATAGGAAGTGGCACGGTTTTGCATATTTTTGGAGGCTCTATGTTTCTTATATCATTAATCCACAGTGTTACTCATACATTCATAGGGGTCTTTTGTTGATAATATGTTCTCCATTCTGGTTTTAAGTGTGCCATTTGTCTTTTTCTTGGATAGTTTCTTTGATATCTATTTATTGGTTAGACTTCAGTTACATATTAAAGCATCCATTATAGGGAATTTGTCTAGCAATATGGACAGGAGGCTTGTTCGTTTGTAATTTTGTCAGCAAAAATTACTTTCTTTGATAGATCAATTACATCTGATATTTGGTCTTGCAGTTGATCGAGTGTCCGTCAATATATGAATTAATGGGGTGTCCTGATTTCCACTGGGAGCATGCACCAGTTCTAGAAATTTGGAAGGAAAAATCTAACAGTAATGGAGAGTCCTCCGTTGTACTCGAGTCTTACTCTCCACTGGAAGCTGTATCAGTGTATGAGTTAGCTCTTGCAAACAACAAGGTGAGCTGGCCATGGAATAGAATGTCACAATTTATACTGAAAAGCTGGTTTTCATGAGGTCTCCTCATTGTATGGCTTCTGGATAGGTCATAGACTTTTCATTGAAGTAAAATGAATTTCCTTTTTCCCCTATCTTGAGCTGTCTGTATATTGACTTGAACCATACACATTATTGTTGTTTCATCTCTTTGGAAGTTGAACGTCAACTATAAAATTCATTTATCCGTCTTTGCAGGTTACTTATAATGGAGAAAAAATTTCTCTGCCGTTCAATCTGGAACTCTTGAAATGGGCTAATAAGACCCGAGAGATATTGTGCCATGCAAAGGTTCCTGATAAAGTTAAGTTCTACAACATCTATGGGACCAATTATGAGACGCCTCATAGTGTCTGGTACTAATTCTTTCTTAAATATTTGGATATCAATTTTACTTGTCTGATGATGGATACTGTTTATAGTTCTAATTCATGAGAATATGGTAACTGAATTGGCTTCTTTGCAGTTATGGAAGTCAGAATGCACCCATTTCTGATCTTCAACAATTACCATTTGTCCAGGTAACATTGTTTTATTTGACTTTGGACTGGTCTGACTGGATTCTGAATTATGTATTTTCATTTCTTCCTTGTCTTATACCACTGGTCTCTCTGACTATCATTTTTATGCATATTCACAGTCTAACT</genome_strand>
        <mrna_strand>ATCCATACATACTGCGTCAGGAGGCAAGAAGATAAACATTATAAGTCATTCTATGGGTGGTCTTCTGGTTAAATGTTTCATGGCTCTCCACAGTGAT.........................................................................................................................................................ATTTTTGAAAAATATGTGAAGAATTGGATTGCAATAGCTGCACCATTCCAAG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGCTCCTGGATATATTACCTCTTCATTATTGAACGGAACATCATTTGTGCATGGATGGGAAGAGAGGTTTTTCATATCCAAATGGAGTATGCATCAACTG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTGATCGAGTGTCCGTCAATATATGAATTAATGGGGTGTCCTGATTTCCACTGGGAGCATGCACCAGTTCTAGAAATTTGGAAGGAAAAATCTAACAGTAATGGAGAGTCCTCCGTTGTACTCGAGTCTTACTCTCCACTGGAAGCTGTATCAGTGTATGAGTTAGCTCTTGCAAACAACAAG...........................................................................................................................................................................................................................................GTTACTTATAATGGAGAAAAAATTTCTCTGCCGTTCAATCTGGAACTCTTGAAATGGGCTAATAAGACCCGAGAGATATTGTGCCATGCAAAGGTTCCTGATNAAGTTAAGTTCTACAACATCTATGGGACCAATTATGAGACGCCTCATAGTGTCTG..............................................................................................................TTATGGAAGTCAGAATGCACCCATTTCTGATCTTCAACAATTACCATTTGTCCAG.......................................................................................................................TCTAACT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0320M09-0CleD/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E340807" ref_strand="+" ref_description="SGN-E340807 [cTOF-5-O22]">
      <seq>atttccggcagagcaacaggcttcaggaaacaatggagtgttttgcgcaaaagctagaatccatacatactgcgtcaggaggcaagaagataaacattataagtcattctatgggtggtcttctggttaaatgtttcatggctctccacagtgatatttttgaaaaatatgtgaagaattggattgcaatagctgcaccattccaaggtgctcctggatatattacctcttcattattgaacggaacatcatttgtgcatggatgggaagagaggtttttcatatccaaatggagtatgcatcaactgttgatcgagtgtccgtcaatatatgaattaatggggtgtcctgatttccactgggagcatgcaccagttctagaaatttggaaggaaaaatctaacagtaatggagagtcctccgttgtactcgagtcttactctccactggaagctgtatcagtgtatgagttagctcttgcaaacaacaaggttacttataatggagaaaaaatttctctgccgttcaatctggaactcttgaaatgggctaataagacccgagagatattgtgccatgcaaaaggttcctgataag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0320M09-0CleD/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0320M09.4" temp_strand="-" temp_description="C02HBa0320M09.4  AC215438.3 htgs_phase:3 submitted_to_sgn_as:C02HBa0320M09 sequenced_by:kribb upload_account_name:korea">
        <position start="117012" stop="113244"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="116712" g_stop="116694" g_length="19"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="19" r_length="19" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="116693" i_stop="116349" i_length="345">
            <donor d_prob="0.984" d_score="0.00"/>
            <acceptor a_prob="0.986" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="116348" g_stop="116213" g_length="136"/>
          <reference_exon_boundary r_type="cDNA" r_start="20" r_stop="155" r_length="136" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="116212" i_stop="116060" i_length="153">
            <donor d_prob="0.937" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="116059" g_stop="116008" g_length="52"/>
          <reference_exon_boundary r_type="cDNA" r_start="156" r_stop="207" r_length="52" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="116007" i_stop="114715" i_length="1293">
            <donor d_prob="0.986" d_score="1.00"/>
            <acceptor a_prob="0.942" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="114714" g_stop="114614" g_length="101"/>
          <reference_exon_boundary r_type="cDNA" r_start="208" r_stop="308" r_length="101" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="114613" i_stop="114066" i_length="548">
            <donor d_prob="0.942" d_score="1.00"/>
            <acceptor a_prob="0.971" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="114065" g_stop="113883" g_length="183"/>
          <reference_exon_boundary r_type="cDNA" r_start="309" r_stop="491" r_length="183" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="113882" i_stop="113648" i_length="235">
            <donor d_prob="0.993" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="113647" g_stop="113543" g_length="105"/>
          <reference_exon_boundary r_type="cDNA" r_start="492" r_stop="597" r_length="106" r_score="0.971"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0320M09.4" gen_strand="-" ref_id="SGN-E340807" ref_strand="+">
        <total_alignment_score>0.995</total_alignment_score>
        <cumulative_length_of_scored_exons>596</cumulative_length_of_scored_exons>
        <coverage percentage="0.998" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0320M09.4" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E340807" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="116712" e_stop="116694"/>
          <exon e_start="116348" e_stop="116213"/>
          <exon e_start="116059" e_stop="116008"/>
          <exon e_start="114714" e_stop="114614"/>
          <exon e_start="114065" e_stop="113883"/>
          <exon e_start="113647" e_stop="113543"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATTTCCGGCAGAGCAACAGGTAGGTGATGGTCATTCATTGAAATGATTTCCAGTAAATGTTTCCCCTGTTAACGATCAGCTTTTGAGTATCACTAATTTTATGTGTTTCTTAATCCTCCTTGAAGAATTGAAATAGAGATGTCATTTACAGATTTAGTCTCTTGCTTAACAGTATGCGGGCGAGATTAATAACCACATACTCTCAGTGTGGTGTTTCTCTATTATCATATCTTAATATTGTTTACTATCTAAATTTAGTGGGCGACTTACTCAGACATTAATATTACATACTCATATTTTGTGTTGAAAACGTTGCCATGTGTTGATGCTGAAAATTTTGCTATATCCTTTTTTCCCCCTCCAGGCTTCAGGAAACAATGGAGTGTTTTGCGCAAAAGCTAGAATCCATACATACTGCGTCAGGAGGCAAGAAGATAAACATTATAAGTCATTCTATGGGTGGTCTTCTGGTTAAATGTTTCATGGCTCTCCACAGTGATGTAAAGCCTCCTCTCCCTTTCTTTTTGTATTTCTGACCTGATACATCAACTCCTAACCACTCTTCGTGGACCTACTTCACTTCCCTGACCACTCTTTTTGGCCCTAACATATTTATTTTAGTTTTAATCTTTTAATTAATGTTGTATTTGCAGATTTTTGAAAAATATGTGAAGAATTGGATTGCAATAGCTGCACCATTCCAAGGTAAGCAGCTCTTTTGTCATTTCAAGTAAGCTGCATGGTATCCCAATGATGTCTCCACTAATATGGGAAGGAGGGAGTTTTTTTCGATTTTAAATTTCTCGTTTAGTTTTTCTTAAAAAAAAAATCTTAATTTTAGCTTACAAAAGATACAAGTTTAAATTTATGTAAATCTATATGCCTAATTTCGTGTATGAATTATCTTTTGGCATGGTTGTGTAACTGTCTATAGAATGAGAAGAAGACTTATCGACATTGATTAGCAAAGAACGATGATGTAACGACATAAAAGTAATAATATTTTTCAGTATTACTTATAAAAAAGAAAAGGTAATCATATTTGCATATTGAGGCCAAACGCTATGCTGTCTAGTAAACCGGTATGCAATAGTCTATAAGTTCAAGCTTTGAAGGCTCAGCCATTGAAACAGTTCTTGATAAATAGGTGAGATTGGTAAATGATACTCAAGTAATGACTTATCTTAATTCCGTCTGCTTGATGTAGCTTAATCTTCTAGTAAGTTTATATGTCATCCTTGTTGAGTAAGGTATTCTAACATGTAATAAGGCCTTAGGCTATCACAGGAAAGATATTGGCAAGACTACAGTACTTGAGAGCTCGAAAGCATACCTATAGGCTTAATTTTGAACATAATCGAAATTAACCCAAAAGAAAATTGAAGAAAAGGATATTATATGTAACAGATCTTGCTTTTGATATTTAAATATTTGGAGGCAAACATTCTAATAGACTTAATTATGTTTTCCATGAACGTCTATGAACAGTTGAGGCAAACACAGTCTAATAGAGTTAATTATGTGTTCTATGAATAACTAGACAGTATTGTACAGAAAGCACAGGTTGTATGGTACTATGATTTCAAATTGAGCTTAAATATCTAATTTTGATCTGTCTCAGAATGTTTCTACTGTTTCTTTACTTTTACCCTTACCCTTTAGAATGGTAGCTTTTCAGGATACTGATTGTAGGAGAATCTACATTTTGTATAATTATGATGTTATCGATTTGGTGTGGAACCTTGGATCTGCAAGGGATAATATCTAATCTTGTAGGCTATGGTTTTGGAATTAATATCCGTGATTTTATTTCTTAAATTCTTACATTCCAAATTATTGCAACTTTATTCCTCTGTCCCCTTGTTTTGTCCTTCTCTCTGACATTAAGCTAAGATCAATTAGTGGTGCCGGCATGGTTTGTGGTGTTCTTTTGTGTCTTACGGATTTTAATTTGATATTCTGATTGATGCGATCCGTCTGTGGTTGATCACGTTACAGGTGCTCCTGGATATATTACCTCTTCATTATTGAACGGAACATCATTTGTGCATGGATGGGAAGAGAGGTTTTTCATATCCAAATGGAGTATGCATCAACTGGTTTGTGTTTCAACTCCACTTGAATTGCACTATGATCTATTCTCCCTTTTCTGTCTTCCCTCCTTCCATTTGCATACTTTGTTATCTAGATTTCTTGCACTATTTTGTTAGACAGTGCTTAGTTCTGTGTCATTTGTGCATAGTCATTTTTTCTTCGTTGTTTCTGCTATCTTGTTGAAATTTGTGTCTAGATTATTGTATATGTTGGTCAATCTAAAACAGTAATTAATGATAGGAAGTGGCACGGTTTTGCATATTTTTGGAGGCTCTATGTTTCTTATATCATTAATCCACAGTGTTACTCATACATTCATAGGGGTCTTTTGTTGATAATATGTTCTCCATTCTGGTTTTAAGTGTGCCATTTGTCTTTTTCTTGGATAGTTTCTTTGATATCTATTTATTGGTTAGACTTCAGTTACATATTAAAGCATCCATTATAGGGAATTTGTCTAGCAATATGGACAGGAGGCTTGTTCGTTTGTAATTTTGTCAGCAAAAATTACTTTCTTTGATAGATCAATTACATCTGATATTTGGTCTTGCAGTTGATCGAGTGTCCGTCAATATATGAATTAATGGGGTGTCCTGATTTCCACTGGGAGCATGCACCAGTTCTAGAAATTTGGAAGGAAAAATCTAACAGTAATGGAGAGTCCTCCGTTGTACTCGAGTCTTACTCTCCACTGGAAGCTGTATCAGTGTATGAGTTAGCTCTTGCAAACAACAAGGTGAGCTGGCCATGGAATAGAATGTCACAATTTATACTGAAAAGCTGGTTTTCATGAGGTCTCCTCATTGTATGGCTTCTGGATAGGTCATAGACTTTTCATTGAAGTAAAATGAATTTCCTTTTTCCCCTATCTTGAGCTGTCTGTATATTGACTTGAACCATACACATTATTGTTGTTTCATCTCTTTGGAAGTTGAACGTCAACTATAAAATTCATTTATCCGTCTTTGCAGGTTACTTATAATGGAGAAAAAATTTCTCTGCCGTTCAATCTGGAACTCTTGAAATGGGCTAATAAGACCCGAGAGATATTGTGCCATGC-AAAGGTTCCTGATAAA</genome_strand>
        <mrna_strand>ATTTCCGGCAGAGCAACAG.........................................................................................................................................................................................................................................................................................................................................................GCTTCAGGAAACAATGGAGTGTTTTGCGCAAAAGCTAGAATCCATACATACTGCGTCAGGAGGCAAGAAGATAAACATTATAAGTCATTCTATGGGTGGTCTTCTGGTTAAATGTTTCATGGCTCTCCACAGTGAT.........................................................................................................................................................ATTTTTGAAAAATATGTGAAGAATTGGATTGCAATAGCTGCACCATTCCAAG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGCTCCTGGATATATTACCTCTTCATTATTGAACGGAACATCATTTGTGCATGGATGGGAAGAGAGGTTTTTCATATCCAAATGGAGTATGCATCAACTG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTGATCGAGTGTCCGTCAATATATGAATTAATGGGGTGTCCTGATTTCCACTGGGAGCATGCACCAGTTCTAGAAATTTGGAAGGAAAAATCTAACAGTAATGGAGAGTCCTCCGTTGTACTCGAGTCTTACTCTCCACTGGAAGCTGTATCAGTGTATGAGTTAGCTCTTGCAAACAACAAG...........................................................................................................................................................................................................................................GTTACTTATAATGGAGAAAAAATTTCTCTGCCGTTCAATCTGGAACTCTTGAAATGGGCTAATAAGACCCGAGAGATATTGTGCCATGCAAAAGGTTCCTGATAAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0320M09-0CleD/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E241402" ref_strand="+" ref_description="SGN-E241402 [cLED-28-P9]">
      <seq>ctgattgtgtatattattaccatgatatgatagttgagatgctcagctggggttaccaagaaggaaaaacactatttggatttggctatgatttccggcagagcaacaggcttcaggaaacaatggagtgttttgcgcaaaagctagaatccatacatactgcgtcaggaggcaagaagataaacattataagtcattctatgggtggtcttctggttaaatgtttcatggctctccacagtgatatttttgaaaaatatgtgaagaattggattgcaatagctgcaccattccaaggtgctcctggatatattacctcttcattattgaacggaacatcatttgtgcatggatgggaagagaggtttttcatatccaaatggagtatgcatcaactgttgatcgagtgtccgtcaatatatgaattaatggggtgtcctgatttccactgggagcatgcaccagttctagaaatttggaaggaaaaatctaacagtaatggagagtcctccgttgtactcgagtcttactctccactggaagctgtatcagtgtatgagttagctcttgc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0320M09-0CleD/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0320M09.4" temp_strand="-" temp_description="C02HBa0320M09.4  AC215438.3 htgs_phase:3 submitted_to_sgn_as:C02HBa0320M09 sequenced_by:kribb upload_account_name:korea">
        <position start="117102" stop="113593"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="116802" g_stop="116694" g_length="109"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="109" r_length="109" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="116693" i_stop="116349" i_length="345">
            <donor d_prob="0.984" d_score="1.00"/>
            <acceptor a_prob="0.986" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="116348" g_stop="116213" g_length="136"/>
          <reference_exon_boundary r_type="cDNA" r_start="110" r_stop="245" r_length="136" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="116212" i_stop="116060" i_length="153">
            <donor d_prob="0.937" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="116059" g_stop="116008" g_length="52"/>
          <reference_exon_boundary r_type="cDNA" r_start="246" r_stop="297" r_length="52" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="116007" i_stop="114715" i_length="1293">
            <donor d_prob="0.986" d_score="1.00"/>
            <acceptor a_prob="0.942" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="114714" g_stop="114614" g_length="101"/>
          <reference_exon_boundary r_type="cDNA" r_start="298" r_stop="398" r_length="101" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="114613" i_stop="114066" i_length="548">
            <donor d_prob="0.942" d_score="1.00"/>
            <acceptor a_prob="0.971" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="114065" g_stop="113893" g_length="173"/>
          <reference_exon_boundary r_type="cDNA" r_start="399" r_stop="571" r_length="173" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0320M09.4" gen_strand="-" ref_id="SGN-E241402" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>571</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0320M09.4" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E241402" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="116802" e_stop="116694"/>
          <exon e_start="116348" e_stop="116213"/>
          <exon e_start="116059" e_stop="116008"/>
          <exon e_start="114714" e_stop="114614"/>
          <exon e_start="114065" e_stop="113893"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTGATTGTGTATATTATTACCATGATATGATAGTTGAGATGCTCAGCTGGGGTTACCAAGAAGGAAAAACACTATTTGGATTTGGCTATGATTTCCGGCAGAGCAACAGGTAGGTGATGGTCATTCATTGAAATGATTTCCAGTAAATGTTTCCCCTGTTAACGATCAGCTTTTGAGTATCACTAATTTTATGTGTTTCTTAATCCTCCTTGAAGAATTGAAATAGAGATGTCATTTACAGATTTAGTCTCTTGCTTAACAGTATGCGGGCGAGATTAATAACCACATACTCTCAGTGTGGTGTTTCTCTATTATCATATCTTAATATTGTTTACTATCTAAATTTAGTGGGCGACTTACTCAGACATTAATATTACATACTCATATTTTGTGTTGAAAACGTTGCCATGTGTTGATGCTGAAAATTTTGCTATATCCTTTTTTCCCCCTCCAGGCTTCAGGAAACAATGGAGTGTTTTGCGCAAAAGCTAGAATCCATACATACTGCGTCAGGAGGCAAGAAGATAAACATTATAAGTCATTCTATGGGTGGTCTTCTGGTTAAATGTTTCATGGCTCTCCACAGTGATGTAAAGCCTCCTCTCCCTTTCTTTTTGTATTTCTGACCTGATACATCAACTCCTAACCACTCTTCGTGGACCTACTTCACTTCCCTGACCACTCTTTTTGGCCCTAACATATTTATTTTAGTTTTAATCTTTTAATTAATGTTGTATTTGCAGATTTTTGAAAAATATGTGAAGAATTGGATTGCAATAGCTGCACCATTCCAAGGTAAGCAGCTCTTTTGTCATTTCAAGTAAGCTGCATGGTATCCCAATGATGTCTCCACTAATATGGGAAGGAGGGAGTTTTTTTCGATTTTAAATTTCTCGTTTAGTTTTTCTTAAAAAAAAAATCTTAATTTTAGCTTACAAAAGATACAAGTTTAAATTTATGTAAATCTATATGCCTAATTTCGTGTATGAATTATCTTTTGGCATGGTTGTGTAACTGTCTATAGAATGAGAAGAAGACTTATCGACATTGATTAGCAAAGAACGATGATGTAACGACATAAAAGTAATAATATTTTTCAGTATTACTTATAAAAAAGAAAAGGTAATCATATTTGCATATTGAGGCCAAACGCTATGCTGTCTAGTAAACCGGTATGCAATAGTCTATAAGTTCAAGCTTTGAAGGCTCAGCCATTGAAACAGTTCTTGATAAATAGGTGAGATTGGTAAATGATACTCAAGTAATGACTTATCTTAATTCCGTCTGCTTGATGTAGCTTAATCTTCTAGTAAGTTTATATGTCATCCTTGTTGAGTAAGGTATTCTAACATGTAATAAGGCCTTAGGCTATCACAGGAAAGATATTGGCAAGACTACAGTACTTGAGAGCTCGAAAGCATACCTATAGGCTTAATTTTGAACATAATCGAAATTAACCCAAAAGAAAATTGAAGAAAAGGATATTATATGTAACAGATCTTGCTTTTGATATTTAAATATTTGGAGGCAAACATTCTAATAGACTTAATTATGTTTTCCATGAACGTCTATGAACAGTTGAGGCAAACACAGTCTAATAGAGTTAATTATGTGTTCTATGAATAACTAGACAGTATTGTACAGAAAGCACAGGTTGTATGGTACTATGATTTCAAATTGAGCTTAAATATCTAATTTTGATCTGTCTCAGAATGTTTCTACTGTTTCTTTACTTTTACCCTTACCCTTTAGAATGGTAGCTTTTCAGGATACTGATTGTAGGAGAATCTACATTTTGTATAATTATGATGTTATCGATTTGGTGTGGAACCTTGGATCTGCAAGGGATAATATCTAATCTTGTAGGCTATGGTTTTGGAATTAATATCCGTGATTTTATTTCTTAAATTCTTACATTCCAAATTATTGCAACTTTATTCCTCTGTCCCCTTGTTTTGTCCTTCTCTCTGACATTAAGCTAAGATCAATTAGTGGTGCCGGCATGGTTTGTGGTGTTCTTTTGTGTCTTACGGATTTTAATTTGATATTCTGATTGATGCGATCCGTCTGTGGTTGATCACGTTACAGGTGCTCCTGGATATATTACCTCTTCATTATTGAACGGAACATCATTTGTGCATGGATGGGAAGAGAGGTTTTTCATATCCAAATGGAGTATGCATCAACTGGTTTGTGTTTCAACTCCACTTGAATTGCACTATGATCTATTCTCCCTTTTCTGTCTTCCCTCCTTCCATTTGCATACTTTGTTATCTAGATTTCTTGCACTATTTTGTTAGACAGTGCTTAGTTCTGTGTCATTTGTGCATAGTCATTTTTTCTTCGTTGTTTCTGCTATCTTGTTGAAATTTGTGTCTAGATTATTGTATATGTTGGTCAATCTAAAACAGTAATTAATGATAGGAAGTGGCACGGTTTTGCATATTTTTGGAGGCTCTATGTTTCTTATATCATTAATCCACAGTGTTACTCATACATTCATAGGGGTCTTTTGTTGATAATATGTTCTCCATTCTGGTTTTAAGTGTGCCATTTGTCTTTTTCTTGGATAGTTTCTTTGATATCTATTTATTGGTTAGACTTCAGTTACATATTAAAGCATCCATTATAGGGAATTTGTCTAGCAATATGGACAGGAGGCTTGTTCGTTTGTAATTTTGTCAGCAAAAATTACTTTCTTTGATAGATCAATTACATCTGATATTTGGTCTTGCAGTTGATCGAGTGTCCGTCAATATATGAATTAATGGGGTGTCCTGATTTCCACTGGGAGCATGCACCAGTTCTAGAAATTTGGAAGGAAAAATCTAACAGTAATGGAGAGTCCTCCGTTGTACTCGAGTCTTACTCTCCACTGGAAGCTGTATCAGTGTATGAGTTAGCTCTTGC</genome_strand>
        <mrna_strand>CTGATTGTGTATATTATTACCATGATATGATAGTTGAGATGCTCAGCTGGGGTTACCAAGAAGGAAAAACACTATTTGGATTTGGCTATGATTTCCGGCAGAGCAACAG.........................................................................................................................................................................................................................................................................................................................................................GCTTCAGGAAACAATGGAGTGTTTTGCGCAAAAGCTAGAATCCATACATACTGCGTCAGGAGGCAAGAAGATAAACATTATAAGTCATTCTATGGGTGGTCTTCTGGTTAAATGTTTCATGGCTCTCCACAGTGAT.........................................................................................................................................................ATTTTTGAAAAATATGTGAAGAATTGGATTGCAATAGCTGCACCATTCCAAG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGCTCCTGGATATATTACCTCTTCATTATTGAACGGAACATCATTTGTGCATGGATGGGAAGAGAGGTTTTTCATATCCAAATGGAGTATGCATCAACTG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTGATCGAGTGTCCGTCAATATATGAATTAATGGGGTGTCCTGATTTCCACTGGGAGCATGCACCAGTTCTAGAAATTTGGAAGGAAAAATCTAACAGTAATGGAGAGTCCTCCGTTGTACTCGAGTCTTACTCTCCACTGGAAGCTGTATCAGTGTATGAGTTAGCTCTTGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0320M09-0CleD/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E269598" ref_strand="+" ref_description="SGN-E269598 [cLEM-2-F5]">
      <seq>agatatggactgtatgctattgataatttggatcctgacatgattattgggtctgattgtgtatattattaccatgatatgatagttgagatgctcagctggggttaccaagaaggaaaaacactatttggatttggctatgatttccggcagagcaacaggcttcaggaaacaatggagtgttttgcgcaaaagctagaatccatacatactgcgtcaggaggcaagaagataaacattataagtcattctatgggtggtcttctggttaaatgtttcatggctctccacagtgatatttttgaaaaatatgtgaagaattggattgcaatagctgcaccattccaaggtgctcctggatatattacctcttcattattgaacggaacatcatttgtgcatggatgggaagagaggtttttcatatccaaatggagtatgcatcaactgttgatcgagtgtccgtcaatatatgaattaatggggtgtcctgatttccactgggagcatgcaccagttctagaaatttggaaggaaaaatct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0320M09-0CleD/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0320M09.4" temp_strand="-" temp_description="C02HBa0320M09.4  AC215438.3 htgs_phase:3 submitted_to_sgn_as:C02HBa0320M09 sequenced_by:kribb upload_account_name:korea">
        <position start="119692" stop="113673"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="119392" g_stop="119351" g_length="42"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="42" r_length="42" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="119350" i_stop="116813" i_length="2538">
            <donor d_prob="0.991" d_score="1.00"/>
            <acceptor a_prob="0.900" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="116812" g_stop="116694" g_length="119"/>
          <reference_exon_boundary r_type="cDNA" r_start="43" r_stop="161" r_length="119" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="116693" i_stop="116349" i_length="345">
            <donor d_prob="0.984" d_score="1.00"/>
            <acceptor a_prob="0.986" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="116348" g_stop="116213" g_length="136"/>
          <reference_exon_boundary r_type="cDNA" r_start="162" r_stop="297" r_length="136" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="116212" i_stop="116060" i_length="153">
            <donor d_prob="0.937" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="116059" g_stop="116008" g_length="52"/>
          <reference_exon_boundary r_type="cDNA" r_start="298" r_stop="349" r_length="52" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="116007" i_stop="114715" i_length="1293">
            <donor d_prob="0.986" d_score="1.00"/>
            <acceptor a_prob="0.942" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="114714" g_stop="114614" g_length="101"/>
          <reference_exon_boundary r_type="cDNA" r_start="350" r_stop="450" r_length="101" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="114613" i_stop="114066" i_length="548">
            <donor d_prob="0.942" d_score="1.00"/>
            <acceptor a_prob="0.971" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="114065" g_stop="113973" g_length="93"/>
          <reference_exon_boundary r_type="cDNA" r_start="451" r_stop="543" r_length="93" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0320M09.4" gen_strand="-" ref_id="SGN-E269598" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>543</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0320M09.4" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E269598" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="119392" e_stop="119351"/>
          <exon e_start="116812" e_stop="116694"/>
          <exon e_start="116348" e_stop="116213"/>
          <exon e_start="116059" e_stop="116008"/>
          <exon e_start="114714" e_stop="114614"/>
          <exon e_start="114065" e_stop="113973"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGATATGGACTGTATGCTATTGATAATTTGGATCCTGACATGGTTAGCTGCCTTTTAGATTATACTAACTATGTGTTGTCATTGTGTTGAAGTTGTAGAAGGTTATTTATCGAGTGATTAATGTTTGTCACTCGGAACCTACATATACAATCGTACTGGAGCAGTGCTGAGATTTGTGCCAATGATAAATCAGAATTATTAGCAAAAATAGTACATGCATTAATTATATGTATGAGAGTCCCCTGTTTGGTGCACTTTTACATGCTCTTCCAAATTACTTTAGGATGTTGTGGTGCTAGTGTTATGTACATCTGATGGATGGAGAATTTATTAGTCTTCACCACTCCCTTCAACTTTGCTCCTAACTCATTTGGATTCAATATAGACCTGAGTATCTTCCTAGTCTCCAAGATCTTCCTTATCACCACGTGGCATTTGTTGGAATAGTGTGTATGTACCCATTTGATCCAAAGACAATTCTTTTTCTCATGCACTGCCCATAACAGCTTCAGGATGGCAGCATTATTCCAAACTTGCAGGTTGATTAGATTTTGACCCCCAGCTGATTTTGGAAGACAAAGTTTCTCCCATGAAACCAGTGCTTTCTAGAACTTAGAGTTGAACCTGTCCATAGATAGGTTCTGCAAATCCCTTCAATTAATTTCAGTATTCTTTTTGGCAATACAAAATTTGTGCCTAATAAGTTTGCATCCCAAGCACTACTGACTTCAATAACTGGATCCTTCCTGCATAGGAGAGTAATCTAGCTGTCCAACATCTTATTCTTTCAGCTCTCTACCAGTGGCATACGTTGAGCTACAGTGAGTCGCTTAGAGGATATAGGCACCCCTAAATATTTGGAAGGCATCTCACCTTCAACATAGTCCAAAGTAGCTAGTATTTTTTGCTTCAAATCAGGTTGGTTTCACTCCAGTGACATATATGGAACTTTTCTCTGTGTTTGCCTGTAAGCCAGAAACTCAGAAAATCTTTGTAAAGCATCTTGCATCAGTTGTATAGAATCAATATCAGCCTTGCAAAACATCAAGAGATCATCTGCAAAGCAGATATGCATTACTCCAAACTGCTTACATCTTGGGTGCAATTTGAATTGAGGAATCTCCTTCAGCTCATTCAACTCTCTTTAAAGATACTCCATTGCTAGAACAAATAAGTAGGGTGACATTGGATCACCTTGTCTGATCCCTTCTTCCTTGGAATAATGGTGGCACACCACCATTGATGATTAGTGAGTATGAAACTGTAGATATGCACTCCATTTCATAGTTCACAAACTGAAAAGGAAAACCCAGTCCAGCTTTGCTAAGAATTCCCACTCAATAGAATCATAAGACTTTCTCAAGTCAACTTTCATAGTACATCTAGGAGATAAACCTGTCCTAGTGTACCACTTCAACAGTTCATGACTTAACAAAATATTATATATACACTCCATTGTTTATTGAGGAGTGTATTACTAATACCATGGATTTCTAGGCATTAGTAGTGCAAAGGATTTAATACATGCATTAATAGGGTTAGAGACCCAATTACTCTTCAAAAGTACTTTTACATCTTTTCCACCATAATTGTGAAGGATACTTTTGGAAATAAATATTTTTATACAATGCATGTTACTTCAATACACCAAACCAAACGATGCACAAGTACTAGTCTATGCATAATTAATACAAGTATAACTAACACATGCATTACTAATACACTCTATTGAGTTTTATTTTTAAACACTCTACCAAACGACCCATAAATCACTATAGATTGGGGTTTTATGTACTGAATCAGTGTTAAGTGCTAAAGAAATAGGAATTTACCAACGAGGGGGAAGCGTCCAATCGTGTTTGAGCATTTCATTGTGTGTGTAACATTATTTTGAACAATGGAGTATTCTTGTTGACTTCTACATGTATTTCAAGGTAATACTTTATGCATTGGATTGGTACAGGTGTAATAGATCTTCGACTTGCTTTTCGGCTAAGAAATTCCCAGGAAGTTCTTTCTCATTAGAGACACAGCAAGGACAATTAAGTTTCTTTCACCCGCTAATGATGAACTATTTGAAGGAAATAAGTGGACACGTTACGGTTTCTAGAAATGCACACAGTGAACAGCATAGATAATTCACTGAATAAATTAGTCTGAGTTGTTTCTTTAGTTTTATTGAAAAGATAAGTTATCACAAAGAGAAGTCATTTTATAAAGTTCCTTACCATCAAGGGTGACACGAGGTTGAATGCGGTAAGTTTAAAATCCTTCTGATGTATAGGGGAAATCAGTGGTCGGGGGGCTGCAATGGATTAGGGGGCCGGACAAAAGTGCTATGATGCTAGAACCTTCGAGTACAAGAGAGAATGAACTTGTGCTATGATGCTAGAACCTTCGAGTACAAGAGAGAATGAAGAGTTCATTCTCAAAGGGAGAGAGTGAAGGATTTGTGTTTGAAAACAAATTGATTTTTTTCATAATGATTCAGTTGTATGTGCTAAAATATTGAAGTCAATATAGTAATGACTTTTTTATGAAATCAGAAATTTGATTTCTTCATCTCATCCTCTTTTGCAGATTATTGGGTCTGATTGTGTATATTATTACCATGATATGATAGTTGAGATGCTCAGCTGGGGTTACCAAGAAGGAAAAACACTATTTGGATTTGGCTATGATTTCCGGCAGAGCAACAGGTAGGTGATGGTCATTCATTGAAATGATTTCCAGTAAATGTTTCCCCTGTTAACGATCAGCTTTTGAGTATCACTAATTTTATGTGTTTCTTAATCCTCCTTGAAGAATTGAAATAGAGATGTCATTTACAGATTTAGTCTCTTGCTTAACAGTATGCGGGCGAGATTAATAACCACATACTCTCAGTGTGGTGTTTCTCTATTATCATATCTTAATATTGTTTACTATCTAAATTTAGTGGGCGACTTACTCAGACATTAATATTACATACTCATATTTTGTGTTGAAAACGTTGCCATGTGTTGATGCTGAAAATTTTGCTATATCCTTTTTTCCCCCTCCAGGCTTCAGGAAACAATGGAGTGTTTTGCGCAAAAGCTAGAATCCATACATACTGCGTCAGGAGGCAAGAAGATAAACATTATAAGTCATTCTATGGGTGGTCTTCTGGTTAAATGTTTCATGGCTCTCCACAGTGATGTAAAGCCTCCTCTCCCTTTCTTTTTGTATTTCTGACCTGATACATCAACTCCTAACCACTCTTCGTGGACCTACTTCACTTCCCTGACCACTCTTTTTGGCCCTAACATATTTATTTTAGTTTTAATCTTTTAATTAATGTTGTATTTGCAGATTTTTGAAAAATATGTGAAGAATTGGATTGCAATAGCTGCACCATTCCAAGGTAAGCAGCTCTTTTGTCATTTCAAGTAAGCTGCATGGTATCCCAATGATGTCTCCACTAATATGGGAAGGAGGGAGTTTTTTTCGATTTTAAATTTCTCGTTTAGTTTTTCTTAAAAAAAAAATCTTAATTTTAGCTTACAAAAGATACAAGTTTAAATTTATGTAAATCTATATGCCTAATTTCGTGTATGAATTATCTTTTGGCATGGTTGTGTAACTGTCTATAGAATGAGAAGAAGACTTATCGACATTGATTAGCAAAGAACGATGATGTAACGACATAAAAGTAATAATATTTTTCAGTATTACTTATAAAAAAGAAAAGGTAATCATATTTGCATATTGAGGCCAAACGCTATGCTGTCTAGTAAACCGGTATGCAATAGTCTATAAGTTCAAGCTTTGAAGGCTCAGCCATTGAAACAGTTCTTGATAAATAGGTGAGATTGGTAAATGATACTCAAGTAATGACTTATCTTAATTCCGTCTGCTTGATGTAGCTTAATCTTCTAGTAAGTTTATATGTCATCCTTGTTGAGTAAGGTATTCTAACATGTAATAAGGCCTTAGGCTATCACAGGAAAGATATTGGCAAGACTACAGTACTTGAGAGCTCGAAAGCATACCTATAGGCTTAATTTTGAACATAATCGAAATTAACCCAAAAGAAAATTGAAGAAAAGGATATTATATGTAACAGATCTTGCTTTTGATATTTAAATATTTGGAGGCAAACATTCTAATAGACTTAATTATGTTTTCCATGAACGTCTATGAACAGTTGAGGCAAACACAGTCTAATAGAGTTAATTATGTGTTCTATGAATAACTAGACAGTATTGTACAGAAAGCACAGGTTGTATGGTACTATGATTTCAAATTGAGCTTAAATATCTAATTTTGATCTGTCTCAGAATGTTTCTACTGTTTCTTTACTTTTACCCTTACCCTTTAGAATGGTAGCTTTTCAGGATACTGATTGTAGGAGAATCTACATTTTGTATAATTATGATGTTATCGATTTGGTGTGGAACCTTGGATCTGCAAGGGATAATATCTAATCTTGTAGGCTATGGTTTTGGAATTAATATCCGTGATTTTATTTCTTAAATTCTTACATTCCAAATTATTGCAACTTTATTCCTCTGTCCCCTTGTTTTGTCCTTCTCTCTGACATTAAGCTAAGATCAATTAGTGGTGCCGGCATGGTTTGTGGTGTTCTTTTGTGTCTTACGGATTTTAATTTGATATTCTGATTGATGCGATCCGTCTGTGGTTGATCACGTTACAGGTGCTCCTGGATATATTACCTCTTCATTATTGAACGGAACATCATTTGTGCATGGATGGGAAGAGAGGTTTTTCATATCCAAATGGAGTATGCATCAACTGGTTTGTGTTTCAACTCCACTTGAATTGCACTATGATCTATTCTCCCTTTTCTGTCTTCCCTCCTTCCATTTGCATACTTTGTTATCTAGATTTCTTGCACTATTTTGTTAGACAGTGCTTAGTTCTGTGTCATTTGTGCATAGTCATTTTTTCTTCGTTGTTTCTGCTATCTTGTTGAAATTTGTGTCTAGATTATTGTATATGTTGGTCAATCTAAAACAGTAATTAATGATAGGAAGTGGCACGGTTTTGCATATTTTTGGAGGCTCTATGTTTCTTATATCATTAATCCACAGTGTTACTCATACATTCATAGGGGTCTTTTGTTGATAATATGTTCTCCATTCTGGTTTTAAGTGTGCCATTTGTCTTTTTCTTGGATAGTTTCTTTGATATCTATTTATTGGTTAGACTTCAGTTACATATTAAAGCATCCATTATAGGGAATTTGTCTAGCAATATGGACAGGAGGCTTGTTCGTTTGTAATTTTGTCAGCAAAAATTACTTTCTTTGATAGATCAATTACATCTGATATTTGGTCTTGCAGTTGATCGAGTGTCCGTCAATATATGAATTAATGGGGTGTCCTGATTTCCACTGGGAGCATGCACCAGTTCTAGAAATTTGGAAGGAAAAATCT</genome_strand>
        <mrna_strand>AGATATGGACTGTATGCTATTGATAATTTGGATCCTGACATG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTATTGGGTCTGATTGTGTATATTATTACCATGATATGATAGTTGAGATGCTCAGCTGGGGTTACCAAGAAGGAAAAACACTATTTGGATTTGGCTATGATTTCCGGCAGAGCAACAG.........................................................................................................................................................................................................................................................................................................................................................GCTTCAGGAAACAATGGAGTGTTTTGCGCAAAAGCTAGAATCCATACATACTGCGTCAGGAGGCAAGAAGATAAACATTATAAGTCATTCTATGGGTGGTCTTCTGGTTAAATGTTTCATGGCTCTCCACAGTGAT.........................................................................................................................................................ATTTTTGAAAAATATGTGAAGAATTGGATTGCAATAGCTGCACCATTCCAAG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGCTCCTGGATATATTACCTCTTCATTATTGAACGGAACATCATTTGTGCATGGATGGGAAGAGAGGTTTTTCATATCCAAATGGAGTATGCATCAACTG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTGATCGAGTGTCCGTCAATATATGAATTAATGGGGTGTCCTGATTTCCACTGGGAGCATGCACCAGTTCTAGAAATTTGGAAGGAAAAATCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0320M09-0CleD/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E212792" ref_strand="+" ref_description="SGN-E212792 [cLEC-73-C11]">
      <seq>cgggtttgggtccgaatacttggtgccgatcatgagttttgtgataaatgatggtgtcgttttgacccttctaccggtaaaactaccaatttgaaccctgacacaaacattgaggtcccggaggacagatatggactgtatgctattgataatttggatcctgacatgattattgggcctgattgtgtatattattaccatgatatgatagttgagatgctcagctggggttaccaagaatgaaaaacactatttggatttggctatgatttccggcatagcaacaggcttcaggaaacgatggagtgttttgcgcaaaagctataatccatacatactgcgtcatgaggcgagaagataaacattataggtcattctatgggtggtcttctgggtaaatgtttcatggctctccacagtgatatttttgaaaaatatgtgaagaattggattgcaatagctgcaccattccaaggtgctcctggatatattacctcttcattattgaacggaacatcatttgtgcatggatgggaagagaggtttttcatatccatatggagtatgcatcaactgttgatc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0320M09-0CleD/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0320M09.4" temp_strand="-" temp_description="C02HBa0320M09.4  AC215438.3 htgs_phase:3 submitted_to_sgn_as:C02HBa0320M09 sequenced_by:kribb upload_account_name:korea">
        <position start="119998" stop="114311"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="119698" g_stop="119623" g_length="76"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="76" r_length="76" r_score="0.974"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="119622" i_stop="119443" i_length="180">
            <donor d_prob="0.977" d_score="0.96"/>
            <acceptor a_prob="1.000" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="119442" g_stop="119351" g_length="92"/>
          <reference_exon_boundary r_type="cDNA" r_start="77" r_stop="168" r_length="92" r_score="0.967"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="119350" i_stop="116813" i_length="2538">
            <donor d_prob="0.991" d_score="1.00"/>
            <acceptor a_prob="0.900" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="116812" g_stop="116694" g_length="119"/>
          <reference_exon_boundary r_type="cDNA" r_start="169" r_stop="287" r_length="119" r_score="0.975"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="116693" i_stop="116349" i_length="345">
            <donor d_prob="0.984" d_score="0.96"/>
            <acceptor a_prob="0.986" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="116348" g_stop="116213" g_length="136"/>
          <reference_exon_boundary r_type="cDNA" r_start="288" r_stop="423" r_length="136" r_score="0.956"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="116212" i_stop="116060" i_length="153">
            <donor d_prob="0.937" d_score="0.98"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="116059" g_stop="116008" g_length="52"/>
          <reference_exon_boundary r_type="cDNA" r_start="424" r_stop="475" r_length="52" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="116007" i_stop="114715" i_length="1293">
            <donor d_prob="0.986" d_score="1.00"/>
            <acceptor a_prob="0.942" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="114714" g_stop="114614" g_length="101"/>
          <reference_exon_boundary r_type="cDNA" r_start="476" r_stop="576" r_length="101" r_score="0.990"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0320M09.4" gen_strand="-" ref_id="SGN-E212792" ref_strand="+">
        <total_alignment_score>0.974</total_alignment_score>
        <cumulative_length_of_scored_exons>576</cumulative_length_of_scored_exons>
        <coverage percentage="0.990" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0320M09.4" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E212792" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="119698" e_stop="119623"/>
          <exon e_start="119442" e_stop="119351"/>
          <exon e_start="116812" e_stop="116694"/>
          <exon e_start="116348" e_stop="116213"/>
          <exon e_start="116059" e_stop="116008"/>
          <exon e_start="114714" e_stop="114614"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CGGGTTTGGGTCCGAATACTTGGTGCCGATCATGAGTTTTGTGATAAGTTATGGTGTCGTTTTGACCCTTCTACCGGTAAGTTGAATTTAGGATTTTCGCTAGCTATTTTTGTAGTTAGTGATAATTTTTGTTGTTGTGCTCTTAAAGTCTGTATTTTGATAGATTATAGGGAAAGAAGAAGCTGGTTTTAGGTGGTAAAGATTGTATTTTGATGTTATTTATCTCATTTTTTTCATTTTGGGTGTTATCAAACAGGTAAAACTACCAATTTAGACCCTGACACAAGCATTGAGGTCCCGGAGGACAGATATGGACTGTATGCTATTGATAATTTGGATCCTGACATGGTTAGCTGCCTTTTAGATTATACTAACTATGTGTTGTCATTGTGTTGAAGTTGTAGAAGGTTATTTATCGAGTGATTAATGTTTGTCACTCGGAACCTACATATACAATCGTACTGGAGCAGTGCTGAGATTTGTGCCAATGATAAATCAGAATTATTAGCAAAAATAGTACATGCATTAATTATATGTATGAGAGTCCCCTGTTTGGTGCACTTTTACATGCTCTTCCAAATTACTTTAGGATGTTGTGGTGCTAGTGTTATGTACATCTGATGGATGGAGAATTTATTAGTCTTCACCACTCCCTTCAACTTTGCTCCTAACTCATTTGGATTCAATATAGACCTGAGTATCTTCCTAGTCTCCAAGATCTTCCTTATCACCACGTGGCATTTGTTGGAATAGTGTGTATGTACCCATTTGATCCAAAGACAATTCTTTTTCTCATGCACTGCCCATAACAGCTTCAGGATGGCAGCATTATTCCAAACTTGCAGGTTGATTAGATTTTGACCCCCAGCTGATTTTGGAAGACAAAGTTTCTCCCATGAAACCAGTGCTTTCTAGAACTTAGAGTTGAACCTGTCCATAGATAGGTTCTGCAAATCCCTTCAATTAATTTCAGTATTCTTTTTGGCAATACAAAATTTGTGCCTAATAAGTTTGCATCCCAAGCACTACTGACTTCAATAACTGGATCCTTCCTGCATAGGAGAGTAATCTAGCTGTCCAACATCTTATTCTTTCAGCTCTCTACCAGTGGCATACGTTGAGCTACAGTGAGTCGCTTAGAGGATATAGGCACCCCTAAATATTTGGAAGGCATCTCACCTTCAACATAGTCCAAAGTAGCTAGTATTTTTTGCTTCAAATCAGGTTGGTTTCACTCCAGTGACATATATGGAACTTTTCTCTGTGTTTGCCTGTAAGCCAGAAACTCAGAAAATCTTTGTAAAGCATCTTGCATCAGTTGTATAGAATCAATATCAGCCTTGCAAAACATCAAGAGATCATCTGCAAAGCAGATATGCATTACTCCAAACTGCTTACATCTTGGGTGCAATTTGAATTGAGGAATCTCCTTCAGCTCATTCAACTCTCTTTAAAGATACTCCATTGCTAGAACAAATAAGTAGGGTGACATTGGATCACCTTGTCTGATCCCTTCTTCCTTGGAATAATGGTGGCACACCACCATTGATGATTAGTGAGTATGAAACTGTAGATATGCACTCCATTTCATAGTTCACAAACTGAAAAGGAAAACCCAGTCCAGCTTTGCTAAGAATTCCCACTCAATAGAATCATAAGACTTTCTCAAGTCAACTTTCATAGTACATCTAGGAGATAAACCTGTCCTAGTGTACCACTTCAACAGTTCATGACTTAACAAAATATTATATATACACTCCATTGTTTATTGAGGAGTGTATTACTAATACCATGGATTTCTAGGCATTAGTAGTGCAAAGGATTTAATACATGCATTAATAGGGTTAGAGACCCAATTACTCTTCAAAAGTACTTTTACATCTTTTCCACCATAATTGTGAAGGATACTTTTGGAAATAAATATTTTTATACAATGCATGTTACTTCAATACACCAAACCAAACGATGCACAAGTACTAGTCTATGCATAATTAATACAAGTATAACTAACACATGCATTACTAATACACTCTATTGAGTTTTATTTTTAAACACTCTACCAAACGACCCATAAATCACTATAGATTGGGGTTTTATGTACTGAATCAGTGTTAAGTGCTAAAGAAATAGGAATTTACCAACGAGGGGGAAGCGTCCAATCGTGTTTGAGCATTTCATTGTGTGTGTAACATTATTTTGAACAATGGAGTATTCTTGTTGACTTCTACATGTATTTCAAGGTAATACTTTATGCATTGGATTGGTACAGGTGTAATAGATCTTCGACTTGCTTTTCGGCTAAGAAATTCCCAGGAAGTTCTTTCTCATTAGAGACACAGCAAGGACAATTAAGTTTCTTTCACCCGCTAATGATGAACTATTTGAAGGAAATAAGTGGACACGTTACGGTTTCTAGAAATGCACACAGTGAACAGCATAGATAATTCACTGAATAAATTAGTCTGAGTTGTTTCTTTAGTTTTATTGAAAAGATAAGTTATCACAAAGAGAAGTCATTTTATAAAGTTCCTTACCATCAAGGGTGACACGAGGTTGAATGCGGTAAGTTTAAAATCCTTCTGATGTATAGGGGAAATCAGTGGTCGGGGGGCTGCAATGGATTAGGGGGCCGGACAAAAGTGCTATGATGCTAGAACCTTCGAGTACAAGAGAGAATGAACTTGTGCTATGATGCTAGAACCTTCGAGTACAAGAGAGAATGAAGAGTTCATTCTCAAAGGGAGAGAGTGAAGGATTTGTGTTTGAAAACAAATTGATTTTTTTCATAATGATTCAGTTGTATGTGCTAAAATATTGAAGTCAATATAGTAATGACTTTTTTATGAAATCAGAAATTTGATTTCTTCATCTCATCCTCTTTTGCAGATTATTGGGTCTGATTGTGTATATTATTACCATGATATGATAGTTGAGATGCTCAGCTGGGGTTACCAAGAAGGAAAAACACTATTTGGATTTGGCTATGATTTCCGGCAGAGCAACAGGTAGGTGATGGTCATTCATTGAAATGATTTCCAGTAAATGTTTCCCCTGTTAACGATCAGCTTTTGAGTATCACTAATTTTATGTGTTTCTTAATCCTCCTTGAAGAATTGAAATAGAGATGTCATTTACAGATTTAGTCTCTTGCTTAACAGTATGCGGGCGAGATTAATAACCACATACTCTCAGTGTGGTGTTTCTCTATTATCATATCTTAATATTGTTTACTATCTAAATTTAGTGGGCGACTTACTCAGACATTAATATTACATACTCATATTTTGTGTTGAAAACGTTGCCATGTGTTGATGCTGAAAATTTTGCTATATCCTTTTTTCCCCCTCCAGGCTTCAGGAAACAATGGAGTGTTTTGCGCAAAAGCTAGAATCCATACATACTGCGTCAGGAGGCAAGAAGATAAACATTATAAGTCATTCTATGGGTGGTCTTCTGGTTAAATGTTTCATGGCTCTCCACAGTGATGTAAAGCCTCCTCTCCCTTTCTTTTTGTATTTCTGACCTGATACATCAACTCCTAACCACTCTTCGTGGACCTACTTCACTTCCCTGACCACTCTTTTTGGCCCTAACATATTTATTTTAGTTTTAATCTTTTAATTAATGTTGTATTTGCAGATTTTTGAAAAATATGTGAAGAATTGGATTGCAATAGCTGCACCATTCCAAGGTAAGCAGCTCTTTTGTCATTTCAAGTAAGCTGCATGGTATCCCAATGATGTCTCCACTAATATGGGAAGGAGGGAGTTTTTTTCGATTTTAAATTTCTCGTTTAGTTTTTCTTAAAAAAAAAATCTTAATTTTAGCTTACAAAAGATACAAGTTTAAATTTATGTAAATCTATATGCCTAATTTCGTGTATGAATTATCTTTTGGCATGGTTGTGTAACTGTCTATAGAATGAGAAGAAGACTTATCGACATTGATTAGCAAAGAACGATGATGTAACGACATAAAAGTAATAATATTTTTCAGTATTACTTATAAAAAAGAAAAGGTAATCATATTTGCATATTGAGGCCAAACGCTATGCTGTCTAGTAAACCGGTATGCAATAGTCTATAAGTTCAAGCTTTGAAGGCTCAGCCATTGAAACAGTTCTTGATAAATAGGTGAGATTGGTAAATGATACTCAAGTAATGACTTATCTTAATTCCGTCTGCTTGATGTAGCTTAATCTTCTAGTAAGTTTATATGTCATCCTTGTTGAGTAAGGTATTCTAACATGTAATAAGGCCTTAGGCTATCACAGGAAAGATATTGGCAAGACTACAGTACTTGAGAGCTCGAAAGCATACCTATAGGCTTAATTTTGAACATAATCGAAATTAACCCAAAAGAAAATTGAAGAAAAGGATATTATATGTAACAGATCTTGCTTTTGATATTTAAATATTTGGAGGCAAACATTCTAATAGACTTAATTATGTTTTCCATGAACGTCTATGAACAGTTGAGGCAAACACAGTCTAATAGAGTTAATTATGTGTTCTATGAATAACTAGACAGTATTGTACAGAAAGCACAGGTTGTATGGTACTATGATTTCAAATTGAGCTTAAATATCTAATTTTGATCTGTCTCAGAATGTTTCTACTGTTTCTTTACTTTTACCCTTACCCTTTAGAATGGTAGCTTTTCAGGATACTGATTGTAGGAGAATCTACATTTTGTATAATTATGATGTTATCGATTTGGTGTGGAACCTTGGATCTGCAAGGGATAATATCTAATCTTGTAGGCTATGGTTTTGGAATTAATATCCGTGATTTTATTTCTTAAATTCTTACATTCCAAATTATTGCAACTTTATTCCTCTGTCCCCTTGTTTTGTCCTTCTCTCTGACATTAAGCTAAGATCAATTAGTGGTGCCGGCATGGTTTGTGGTGTTCTTTTGTGTCTTACGGATTTTAATTTGATATTCTGATTGATGCGATCCGTCTGTGGTTGATCACGTTACAGGTGCTCCTGGATATATTACCTCTTCATTATTGAACGGAACATCATTTGTGCATGGATGGGAAGAGAGGTTTTTCATATCCAAATGGAGTATGCATCAACTG</genome_strand>
        <mrna_strand>CGGGTTTGGGTCCGAATACTTGGTGCCGATCATGAGTTTTGTGATAAATGATGGTGTCGTTTTGACCCTTCTACCG....................................................................................................................................................................................GTAAAACTACCAATTTGAACCCTGACACAAACATTGAGGTCCCGGAGGACAGATATGGACTGTATGCTATTGATAATTTGGATCCTGACATG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTATTGGGCCTGATTGTGTATATTATTACCATGATATGATAGTTGAGATGCTCAGCTGGGGTTACCAAGAATGAAAAACACTATTTGGATTTGGCTATGATTTCCGGCATAGCAACAG.........................................................................................................................................................................................................................................................................................................................................................GCTTCAGGAAACGATGGAGTGTTTTGCGCAAAAGCTATAATCCATACATACTGCGTCATGAGGCGAGAAGATAAACATTATAGGTCATTCTATGGGTGGTCTTCTGGGTAAATGTTTCATGGCTCTCCACAGTGAT.........................................................................................................................................................ATTTTTGAAAAATATGTGAAGAATTGGATTGCAATAGCTGCACCATTCCAAG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGCTCCTGGATATATTACCTCTTCATTATTGAACGGAACATCATTTGTGCATGGATGGGAAGAGAGGTTTTTCATATCCATATGGAGTATGCATCAACTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0320M09-0CleD/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E322997" ref_strand="+" ref_description="SGN-E322997 [cTOB-30-P5]">
      <seq>tttctgtaatctgcaatttgacgttaggggaatggcgatgttaatagaggagctgattaagtcaatagagatgtggctgaagctgatcaagaagcctcaggagtacattgacccgacacttgatccagttctattagttccgggtgttgccgggtcgattctcaacgctgttgataagaaaacaggtcggaccgaacgggtttgggtccgaatacttggtgccgatcatgagttttgtgataagttatggtgtcgttttgacccttctaccggtaaaactaccaatttagaccctgacacaagcattgaggtcccggaggacagatatggactgtatgctattgataatttggatcctgacatgattattgggtctgattgtgtatattattaccatgatatgatagttgagatgctcagctggggttaccaagaaggaaaaacactatttggatttggctatgatttccggcagagcaacaggcttcaggaaacaatggagtgttttgcgcaaaagctagaatccatacatactgcgtcaggagggcagaagataaacattataagtcattctatgg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0320M09-0CleD/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0320M09.4" temp_strand="-" temp_description="C02HBa0320M09.4  AC215438.3 htgs_phase:3 submitted_to_sgn_as:C02HBa0320M09 sequenced_by:kribb upload_account_name:korea">
        <position start="120194" stop="115954"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="119894" g_stop="119623" g_length="272"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="272" r_length="272" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="119622" i_stop="119443" i_length="180">
            <donor d_prob="0.977" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="119442" g_stop="119351" g_length="92"/>
          <reference_exon_boundary r_type="cDNA" r_start="273" r_stop="364" r_length="92" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="119350" i_stop="116813" i_length="2538">
            <donor d_prob="0.991" d_score="1.00"/>
            <acceptor a_prob="0.900" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="116812" g_stop="116694" g_length="119"/>
          <reference_exon_boundary r_type="cDNA" r_start="365" r_stop="483" r_length="119" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="116693" i_stop="116349" i_length="345">
            <donor d_prob="0.984" d_score="1.00"/>
            <acceptor a_prob="0.986" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="116348" g_stop="116254" g_length="95"/>
          <reference_exon_boundary r_type="cDNA" r_start="484" r_stop="578" r_length="95" r_score="0.979"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0320M09.4" gen_strand="-" ref_id="SGN-E322997" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>578</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0320M09.4" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E322997" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="119894" e_stop="119623"/>
          <exon e_start="119442" e_stop="119351"/>
          <exon e_start="116812" e_stop="116694"/>
          <exon e_start="116348" e_stop="116254"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTCTGTAATCTGCAATTTGACGTTAGGGGAATGGCGATGTTAATAGAGGAGCTGATTAAGTCAATAGAGATGTGGCTGAAGCTGATCAAGAAGCCTCAGGAGTACATTGACCCGACACTTGATCCAGTTCTATTAGTTCCGGGTGTTGCCGGGTCGATTCTCAACGCTGTTGATAAGAAAACAGGTCGGACCGAACGGGTTTGGGTCCGAATACTTGGTGCCGATCATGAGTTTTGTGATAAGTTATGGTGTCGTTTTGACCCTTCTACCGGTAAGTTGAATTTAGGATTTTCGCTAGCTATTTTTGTAGTTAGTGATAATTTTTGTTGTTGTGCTCTTAAAGTCTGTATTTTGATAGATTATAGGGAAAGAAGAAGCTGGTTTTAGGTGGTAAAGATTGTATTTTGATGTTATTTATCTCATTTTTTTCATTTTGGGTGTTATCAAACAGGTAAAACTACCAATTTAGACCCTGACACAAGCATTGAGGTCCCGGAGGACAGATATGGACTGTATGCTATTGATAATTTGGATCCTGACATGGTTAGCTGCCTTTTAGATTATACTAACTATGTGTTGTCATTGTGTTGAAGTTGTAGAAGGTTATTTATCGAGTGATTAATGTTTGTCACTCGGAACCTACATATACAATCGTACTGGAGCAGTGCTGAGATTTGTGCCAATGATAAATCAGAATTATTAGCAAAAATAGTACATGCATTAATTATATGTATGAGAGTCCCCTGTTTGGTGCACTTTTACATGCTCTTCCAAATTACTTTAGGATGTTGTGGTGCTAGTGTTATGTACATCTGATGGATGGAGAATTTATTAGTCTTCACCACTCCCTTCAACTTTGCTCCTAACTCATTTGGATTCAATATAGACCTGAGTATCTTCCTAGTCTCCAAGATCTTCCTTATCACCACGTGGCATTTGTTGGAATAGTGTGTATGTACCCATTTGATCCAAAGACAATTCTTTTTCTCATGCACTGCCCATAACAGCTTCAGGATGGCAGCATTATTCCAAACTTGCAGGTTGATTAGATTTTGACCCCCAGCTGATTTTGGAAGACAAAGTTTCTCCCATGAAACCAGTGCTTTCTAGAACTTAGAGTTGAACCTGTCCATAGATAGGTTCTGCAAATCCCTTCAATTAATTTCAGTATTCTTTTTGGCAATACAAAATTTGTGCCTAATAAGTTTGCATCCCAAGCACTACTGACTTCAATAACTGGATCCTTCCTGCATAGGAGAGTAATCTAGCTGTCCAACATCTTATTCTTTCAGCTCTCTACCAGTGGCATACGTTGAGCTACAGTGAGTCGCTTAGAGGATATAGGCACCCCTAAATATTTGGAAGGCATCTCACCTTCAACATAGTCCAAAGTAGCTAGTATTTTTTGCTTCAAATCAGGTTGGTTTCACTCCAGTGACATATATGGAACTTTTCTCTGTGTTTGCCTGTAAGCCAGAAACTCAGAAAATCTTTGTAAAGCATCTTGCATCAGTTGTATAGAATCAATATCAGCCTTGCAAAACATCAAGAGATCATCTGCAAAGCAGATATGCATTACTCCAAACTGCTTACATCTTGGGTGCAATTTGAATTGAGGAATCTCCTTCAGCTCATTCAACTCTCTTTAAAGATACTCCATTGCTAGAACAAATAAGTAGGGTGACATTGGATCACCTTGTCTGATCCCTTCTTCCTTGGAATAATGGTGGCACACCACCATTGATGATTAGTGAGTATGAAACTGTAGATATGCACTCCATTTCATAGTTCACAAACTGAAAAGGAAAACCCAGTCCAGCTTTGCTAAGAATTCCCACTCAATAGAATCATAAGACTTTCTCAAGTCAACTTTCATAGTACATCTAGGAGATAAACCTGTCCTAGTGTACCACTTCAACAGTTCATGACTTAACAAAATATTATATATACACTCCATTGTTTATTGAGGAGTGTATTACTAATACCATGGATTTCTAGGCATTAGTAGTGCAAAGGATTTAATACATGCATTAATAGGGTTAGAGACCCAATTACTCTTCAAAAGTACTTTTACATCTTTTCCACCATAATTGTGAAGGATACTTTTGGAAATAAATATTTTTATACAATGCATGTTACTTCAATACACCAAACCAAACGATGCACAAGTACTAGTCTATGCATAATTAATACAAGTATAACTAACACATGCATTACTAATACACTCTATTGAGTTTTATTTTTAAACACTCTACCAAACGACCCATAAATCACTATAGATTGGGGTTTTATGTACTGAATCAGTGTTAAGTGCTAAAGAAATAGGAATTTACCAACGAGGGGGAAGCGTCCAATCGTGTTTGAGCATTTCATTGTGTGTGTAACATTATTTTGAACAATGGAGTATTCTTGTTGACTTCTACATGTATTTCAAGGTAATACTTTATGCATTGGATTGGTACAGGTGTAATAGATCTTCGACTTGCTTTTCGGCTAAGAAATTCCCAGGAAGTTCTTTCTCATTAGAGACACAGCAAGGACAATTAAGTTTCTTTCACCCGCTAATGATGAACTATTTGAAGGAAATAAGTGGACACGTTACGGTTTCTAGAAATGCACACAGTGAACAGCATAGATAATTCACTGAATAAATTAGTCTGAGTTGTTTCTTTAGTTTTATTGAAAAGATAAGTTATCACAAAGAGAAGTCATTTTATAAAGTTCCTTACCATCAAGGGTGACACGAGGTTGAATGCGGTAAGTTTAAAATCCTTCTGATGTATAGGGGAAATCAGTGGTCGGGGGGCTGCAATGGATTAGGGGGCCGGACAAAAGTGCTATGATGCTAGAACCTTCGAGTACAAGAGAGAATGAACTTGTGCTATGATGCTAGAACCTTCGAGTACAAGAGAGAATGAAGAGTTCATTCTCAAAGGGAGAGAGTGAAGGATTTGTGTTTGAAAACAAATTGATTTTTTTCATAATGATTCAGTTGTATGTGCTAAAATATTGAAGTCAATATAGTAATGACTTTTTTATGAAATCAGAAATTTGATTTCTTCATCTCATCCTCTTTTGCAGATTATTGGGTCTGATTGTGTATATTATTACCATGATATGATAGTTGAGATGCTCAGCTGGGGTTACCAAGAAGGAAAAACACTATTTGGATTTGGCTATGATTTCCGGCAGAGCAACAGGTAGGTGATGGTCATTCATTGAAATGATTTCCAGTAAATGTTTCCCCTGTTAACGATCAGCTTTTGAGTATCACTAATTTTATGTGTTTCTTAATCCTCCTTGAAGAATTGAAATAGAGATGTCATTTACAGATTTAGTCTCTTGCTTAACAGTATGCGGGCGAGATTAATAACCACATACTCTCAGTGTGGTGTTTCTCTATTATCATATCTTAATATTGTTTACTATCTAAATTTAGTGGGCGACTTACTCAGACATTAATATTACATACTCATATTTTGTGTTGAAAACGTTGCCATGTGTTGATGCTGAAAATTTTGCTATATCCTTTTTTCCCCCTCCAGGCTTCAGGAAACAATGGAGTGTTTTGCGCAAAAGCTAGAATCCATACATACTGCGTCAGGAGGCAAGAAGATAAACATTATAAGTCATTCTATGG</genome_strand>
        <mrna_strand>TTTCTGTAATCTGCAATTTGACGTTAGGGGAATGGCGATGTTAATAGAGGAGCTGATTAAGTCAATAGAGATGTGGCTGAAGCTGATCAAGAAGCCTCAGGAGTACATTGACCCGACACTTGATCCAGTTCTATTAGTTCCGGGTGTTGCCGGGTCGATTCTCAACGCTGTTGATAAGAAAACAGGTCGGACCGAACGGGTTTGGGTCCGAATACTTGGTGCCGATCATGAGTTTTGTGATAAGTTATGGTGTCGTTTTGACCCTTCTACCG....................................................................................................................................................................................GTAAAACTACCAATTTAGACCCTGACACAAGCATTGAGGTCCCGGAGGACAGATATGGACTGTATGCTATTGATAATTTGGATCCTGACATG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTATTGGGTCTGATTGTGTATATTATTACCATGATATGATAGTTGAGATGCTCAGCTGGGGTTACCAAGAAGGAAAAACACTATTTGGATTTGGCTATGATTTCCGGCAGAGCAACAG.........................................................................................................................................................................................................................................................................................................................................................GCTTCAGGAAACAATGGAGTGTTTTGCGCAAAAGCTAGAATCCATACATACTGCGTCAGGAGGGCAGAAGATAAACATTATAAGTCATTCTATGG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0320M09-0CleD/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E276637" ref_strand="+" ref_description="SGN-E276637 [cLEN-14-C7]">
      <seq>taggggaatggcgatgttaatagaggagctgattaagtcaatagagatgtggctgaagctgatcaagaagcctcaggagtacattgacccgacacttgatccagttttattagttccgggtgttgccgggtcgattctcaacgctgttgataagaaaacaggtcggaccgaacgggtttgggtccgaatacttggtgccgatcatgagttttgtgataagttatggtgtcgttttgacccttctaccggtaaaactaccaatttagaccctgacacaagcattg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0320M09-0CleD/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0320M09.4" temp_strand="-" temp_description="C02HBa0320M09.4  AC215438.3 htgs_phase:3 submitted_to_sgn_as:C02HBa0320M09 sequenced_by:kribb upload_account_name:korea">
        <position start="120170" stop="119107"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="119870" g_stop="119623" g_length="248"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="248" r_length="248" r_score="0.996"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="119622" i_stop="119443" i_length="180">
            <donor d_prob="0.977" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="119442" g_stop="119407" g_length="36"/>
          <reference_exon_boundary r_type="cDNA" r_start="249" r_stop="284" r_length="36" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0320M09.4" gen_strand="-" ref_id="SGN-E276637" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>284</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0320M09.4" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E276637" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="119870" e_stop="119623"/>
          <exon e_start="119442" e_stop="119407"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TAGGGGAATGGCGATGTTAATAGAGGAGCTGATTAAGTCAATAGAGATGTGGCTGAAGCTGATCAAGAAGCCTCAGGAGTACATTGACCCGACACTTGATCCAGTTCTATTAGTTCCGGGTGTTGCCGGGTCGATTCTCAACGCTGTTGATAAGAAAACAGGTCGGACCGAACGGGTTTGGGTCCGAATACTTGGTGCCGATCATGAGTTTTGTGATAAGTTATGGTGTCGTTTTGACCCTTCTACCGGTAAGTTGAATTTAGGATTTTCGCTAGCTATTTTTGTAGTTAGTGATAATTTTTGTTGTTGTGCTCTTAAAGTCTGTATTTTGATAGATTATAGGGAAAGAAGAAGCTGGTTTTAGGTGGTAAAGATTGTATTTTGATGTTATTTATCTCATTTTTTTCATTTTGGGTGTTATCAAACAGGTAAAACTACCAATTTAGACCCTGACACAAGCATTG</genome_strand>
        <mrna_strand>TAGGGGAATGGCGATGTTAATAGAGGAGCTGATTAAGTCAATAGAGATGTGGCTGAAGCTGATCAAGAAGCCTCAGGAGTACATTGACCCGACACTTGATCCAGTTTTATTAGTTCCGGGTGTTGCCGGGTCGATTCTCAACGCTGTTGATAAGAAAACAGGTCGGACCGAACGGGTTTGGGTCCGAATACTTGGTGCCGATCATGAGTTTTGTGATAAGTTATGGTGTCGTTTTGACCCTTCTACCG....................................................................................................................................................................................GTAAAACTACCAATTTAGACCCTGACACAAGCATTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
    <total_number_ESTs_reported>79</total_number_ESTs_reported>
    </alignment_module>
  <PGL_module xmlns="http://www.genomethreader.org/GTH_output/PGL_module/">
    <predicted_gene_location>
      <PGL_line PGL_serial="1" PGL_strand="+" PGL_start="10060" PGL_stop="10850"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="10060" e_stop="10850"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.996"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.996">
            <gDNA_exon_boundary e_start="10060" e_stop="10850" e_length="791"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="10060" stop="10837"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E702262" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="10077" stop="10850"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E727031" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="10089" stop="10509"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E335456" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="10112" stop="10836"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E340188" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="10126" stop="10749"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E212184" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="1" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>TTGTCATTTTACAGTTATAACCTTTCTAACAGAATCTCAGTCACCCCAACACCCTCCTCCGTCCCAAACCTTCGGTGACATCTGAAGTCGCCACCGCCTACCGCCCGCCGTACCACATGCTTCGGAACCTCCGAACGCGGCGGCGTCCGCTTTACGGCGCGCACATTTGCGCCTTAGCGGCAGCGATTCTCCTCCTCCTCTCTGTTTCACTCCTCTACAGTCGCCTCAACTTCTTCCTCCAACCTAACAATCCCCATCCGCATCCCCTCCAATACGACACCATTTCACTGAACAACCCTCTCGTCGACGATTTAGCTGACGCTGATTACCGCTCCTCAGATGACCGCATTGACGAGCTCGACGTTGCTGACAGTAACAACAATAACGATGATGAGTTCCTCTTATCCAATGAATCCGAAGAGGACGATGAAGAAATCATCAATCAATACCCTAGGGTTTCGTCGACATATTTCTACGATCAGAGGCACGGAGTTGTACGGAGAGCGTTTAACAAACGATCAATTGAGGAATGGGAAGATTACGTTAATTTTGAATCGAGGATGAAGTTAGGATTAGGGTTTAAGAGTGATGAATCTAAGGCCGCGTTTGGATCGGATGATCTTCCAGTGGATGTGCAAATGAGGATGAAGTTGAGCGAAATTGAGAGTGTTGAAGATGCTTTGTTACTAAAAGGATCACCTTTGAGGGAAGGGTGGGGTGAGTGGTTTGAAAAGAAGAGTGATTTTTTGAGGCGTGACAGAATGTTCAAGTCAAATCTGGAGGCGTTAAAT</gDNA_template>
            <first_frame> L  S  F  Y  S  Y  N  L  S  N  R  I  S  V  T  P  T  P  S  S  V  P  N  L  R  *  H  L  K  S  P  P  P  T  A  R  R  T  T  C  F  G  T  S  E  R  G  G  V  R  F  T  A  R  T  F  A  P  *  R  Q  R  F  S  S  S  S  L  F  H  S  S  T  V  A  S  T  S  S  S  N  L  T  I  P  I  R  I  P  S  N  T  T  P  F  H  *  T  T  L  S  S  T  I  *  L  T  L  I  T  A  P  Q  M  T  A  L  T  S  S  T  L  L  T  V  T  T  I  T  M  M  S  S  S  Y  P  M  N  P  K  R  T  M  K  K  S  S  I  N  T  L  G  F  R  R  H  I  S  T  I  R  G  T  E  L  Y  G  E  R  L  T  N  D  Q  L  R  N  G  K  I  T  L  I  L  N  R  G  *  S  *  D  *  G  L  R  V  M  N  L  R  P  R  L  D  R  M  I  F  Q  W  M  C  K  *  G  *  S  *  A  K  L  R  V  L  K  M  L  C  Y  *  K  D  H  L  *  G  K  G  G  V  S  G  L  K  R  R  V  I  F  *  G  V  T  E  C  S  S  Q  I  W  R  R  *   </first_frame>
            <second_frame>  C  H  F  T  V  I  T  F  L  T  E  S  Q  S  P  Q  H  P  P  P  S  Q  T  F  G  D  I  *  S  R  H  R  L  P  P  A  V  P  H  A  S  E  P  P  N  A  A  A  S  A  L  R  R  A  H  L  R  L  S  G  S  D  S  P  P  P  L  C  F  T  P  L  Q  S  P  Q  L  L  P  P  T  *  Q  S  P  S  A  S  P  P  I  R  H  H  F  T  E  Q  P  S  R  R  R  F  S  *  R  *  L  P  L  L  R  *  P  H  *  R  A  R  R  C  *  Q  *  Q  Q  *  R  *  *  V  P  L  I  Q  *  I  R  R  G  R  *  R  N  H  Q  S  I  P  *  G  F  V  D  I  F  L  R  S  E  A  R  S  C  T  E  S  V  *  Q  T  I  N  *  G  M  G  R  L  R  *  F  *  I  E  D  E  V  R  I  R  V  *  E  *  *  I  *  G  R  V  W  I  G  *  S  S  S  G  C  A  N  E  D  E  V  E  R  N  *  E  C  *  R  C  F  V  T  K  R  I  T  F  E  G  R  V  G  *  V  V  *  K  E  E  *  F  F  E  A  *  Q  N  V  Q  V  K  S  G  G  V  K  </second_frame>
            <third_frame>   V  I  L  Q  L  *  P  F  *  Q  N  L  S  H  P  N  T  L  L  R  P  K  P  S  V  T  S  E  V  A  T  A  Y  R  P  P  Y  H  M  L  R  N  L  R  T  R  R  R  P  L  Y  G  A  H  I  C  A  L  A  A  A  I  L  L  L  L  S  V  S  L  L  Y  S  R  L  N  F  F  L  Q  P  N  N  P  H  P  H  P  L  Q  Y  D  T  I  S  L  N  N  P  L  V  D  D  L  A  D  A  D  Y  R  S  S  D  D  R  I  D  E  L  D  V  A  D  S  N  N  N  N  D  D  E  F  L  L  S  N  E  S  E  E  D  D  E  E  I  I  N  Q  Y  P  R  V  S  S  T  Y  F  Y  D  Q  R  H  G  V  V  R  R  A  F  N  K  R  S  I  E  E  W  E  D  Y  V  N  F  E  S  R  M  K  L  G  L  G  F  K  S  D  E  S  K  A  A  F  G  S  D  D  L  P  V  D  V  Q  M  R  M  K  L  S  E  I  E  S  V  E  D  A  L  L  L  K  G  S  P  L  R  E  G  W  G  E  W  F  E  K  K  S  D  F  L  R  R  D  R  M  F  K  S  N  L  E  A  L  N </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02HBa0320M09.4" strand="+"/>
                <serials PGL_serial="1" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="10089" stop="10850"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>762</number_coding_nucleotides>
                  <number_encoded_amino_acids>254</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>QNLSHPNTLLRPKPSVTSEVATAYRPPYHMLRNLRTRRRPLYGAHICALAAAILLLLSVSLLYSRLNFFLQPNNPHPHPLQYDTISLNNPLVDDLADADYRSSDDRIDELDVADSNNNNDDEFLLSNESEEDDEEIINQYPRVSSTYFYDQRHGVVRRAFNKRSIEEWEDYVNFESRMKLGLGFKSDESKAAFGSDDLPVDVQMRMKLSEIESVEDALLLKGSPLREGWGEWFEKKSDFLRRDRMFKSNLEALN</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="2" PGL_strand="+" PGL_start="11280" PGL_stop="16490"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="13696" e_stop="13732"/>
            <exon e_start="13823" e_stop="14017"/>
            <exon e_start="15978" e_stop="16490"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.314" acc_prob="0.977" e_score="0.946"/>
          <exon-intron don_prob="0.993" acc_prob="0.999" e_score="0.923"/>
          <exon-only e_score="0.930"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.946">
            <gDNA_exon_boundary e_start="13696" e_stop="13732" e_length="37"/>
          </exon>
          <intron i_serial="1" don_prob="0.314" acc_prob="0.977">
            <gDNA_intron_boundary i_start="13733" i_stop="13822" i_length="90"/>
          </intron>
          <exon e_serial="2" e_score="0.923">
            <gDNA_exon_boundary e_start="13823" e_stop="14017" e_length="195"/>
          </exon>
          <intron i_serial="2" don_prob="0.993" acc_prob="0.999">
            <gDNA_intron_boundary i_start="14018" i_stop="15977" i_length="1960"/>
          </intron>
          <exon e_serial="3" e_score="0.930">
            <gDNA_exon_boundary e_start="15978" e_stop="16490" e_length="513"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="13696" stop="13732"/>
              <exon start="13823" stop="14017"/>
              <exon start="15978" stop="16485"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E371473" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="13696" stop="13732"/>
              <exon start="13823" stop="14017"/>
              <exon start="15978" stop="16412"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E371097" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="13696" stop="13732"/>
              <exon start="13823" stop="14017"/>
              <exon start="15978" stop="16241"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E282649" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="13701" stop="13732"/>
              <exon start="13823" stop="14017"/>
              <exon start="15978" stop="16490"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E371472" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="13702" stop="13732"/>
              <exon start="13823" stop="14017"/>
              <exon start="15978" stop="16331"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E371796" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="13856" stop="14017"/>
              <exon start="15978" stop="16490"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E371096" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="2" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>TGCTACAGTTTATTGCGGGAGAAGGATAGGAAAACAA : TCCTTTTGTAATGGAGTGTTTGAAGGAGTTTTATGCATCTTATGACGACACACAATTGAGATGGAATGGAGCTGATCTTTTGACAAGAGTTGCTAGTAACTTTTCCGTCAATGGTAATCTTTCCAGTAGAAAGAGGGAGATCAAATTTCAACCCTCGTTTGTTTTCTTCCCCATCGGTCATAACAATATTACCAG : ATACTTCTCGGCACCAGCAATGGAAACTGAGAAAACTAAACAAGATACGCTGTTCAAAACTATCCTCAAAGAAGCTGTCACATTTCACTTTTGGAATGGCTTAACTTCAGCTATGGTTCCAGAGGCTGGCAGCCTTGCACACCGGCTCATTAATTACAATTGCCTACGTTGCTCTGACACATTGTGAAACACCATTAAAGCAGATGGATGACCTTTTAAAGCATTTTTGTTTTCATGCCATTAGATATACCTCACAGCTTTTAAAGATATTCCGGTGGTGCTTCATCCATGAATAATATATAAATTTTTGTTGTACAAAATATGAATCTCCAGTTGGTTGGCTTTCTGGACCTTGTCTATATTAGTTGTTGTAGATTCCCTCGAGGGACGAATTAAGAGGTCCTGCTTTTTGTAGCTGAGTTCTTACTGTATATTTCCCCTTGTGAGTTTTGTAGAACTATTTGTAGTCATTGGCAACAGGACAATGATATATTTAAATGATGTTCTTGTATG</gDNA_template>
            <first_frame> C  Y  S  L  L  R  E  K  D  R  K  T   : I  L  L  *  W  S  V  *  R  S  F  M  H  L  M  T  T  H  N  *  D  G  M  E  L  I  F  *  Q  E  L  L  V  T  F  P  S  M  V  I  F  P  V  E  R  G  R  S  N  F  N  P  R  L  F  S  S  P  S  V  I  T  I  L  P   : D  T  S  R  H  Q  Q  W  K  L  R  K  L  N  K  I  R  C  S  K  L  S  S  K  K  L  S  H  F  T  F  G  M  A  *  L  Q  L  W  F  Q  R  L  A  A  L  H  T  G  S  L  I  T  I  A  Y  V  A  L  T  H  C  E  T  P  L  K  Q  M  D  D  L  L  K  H  F  C  F  H  A  I  R  Y  T  S  Q  L  L  K  I  F  R  W  C  F  I  H  E  *  Y  I  N  F  C  C  T  K  Y  E  S  P  V  G  W  L  S  G  P  C  L  Y  *  L  L  *  I  P  S  R  D  E  L  R  G  P  A  F  C  S  *  V  L  T  V  Y  F  P  L  *  V  L  *  N  Y  L  *  S  L  A  T  G  Q  *  Y  I  *  M  M  F  L  Y  </first_frame>
            <second_frame>  A  T  V  Y  C  G  R  R  I  G  K  Q  :  S  F  C  N  G  V  F  E  G  V  L  C  I  L  *  R  H  T  I  E  M  E  W  S  *  S  F  D  K  S  C  *  *  L  F  R  Q  W  *  S  F  Q  *  K  E  G  D  Q  I  S  T  L  V  C  F  L  P  H  R  S  *  Q  Y  Y  Q  :  I  L  L  G  T  S  N  G  N  *  E  N  *  T  R  Y  A  V  Q  N  Y  P  Q  R  S  C  H  I  S  L  L  E  W  L  N  F  S  Y  G  S  R  G  W  Q  P  C  T  P  A  H  *  L  Q  L  P  T  L  L  *  H  I  V  K  H  H  *  S  R  W  M  T  F  *  S  I  F  V  F  M  P  L  D  I  P  H  S  F  *  R  Y  S  G  G  A  S  S  M  N  N  I  *  I  F  V  V  Q  N  M  N  L  Q  L  V  G  F  L  D  L  V  Y  I  S  C  C  R  F  P  R  G  T  N  *  E  V  L  L  F  V  A  E  F  L  L  Y  I  S  P  C  E  F  C  R  T  I  C  S  H  W  Q  Q  D  N  D  I  F  K  *  C  S  C  M </second_frame>
            <third_frame>   L  Q  F  I  A  G  E  G  *  E  N  N :   P  F  V  M  E  C  L  K  E  F  Y  A  S  Y  D  D  T  Q  L  R  W  N  G  A  D  L  L  T  R  V  A  S  N  F  S  V  N  G  N  L  S  S  R  K  R  E  I  K  F  Q  P  S  F  V  F  F  P  I  G  H  N  N  I  T  R :   Y  F  S  A  P  A  M  E  T  E  K  T  K  Q  D  T  L  F  K  T  I  L  K  E  A  V  T  F  H  F  W  N  G  L  T  S  A  M  V  P  E  A  G  S  L  A  H  R  L  I  N  Y  N  C  L  R  C  S  D  T  L  *  N  T  I  K  A  D  G  *  P  F  K  A  F  L  F  S  C  H  *  I  Y  L  T  A  F  K  D  I  P  V  V  L  H  P  *  I  I  Y  K  F  L  L  Y  K  I  *  I  S  S  W  L  A  F  W  T  L  S  I  L  V  V  V  D  S  L  E  G  R  I  K  R  S  C  F  L  *  L  S  S  Y  C  I  F  P  L  V  S  F  V  E  L  F  V  V  I  G  N  R  T  M  I  Y  L  N  D  V  L  V   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02HBa0320M09.4" strand="+"/>
                <serials PGL_serial="2" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="13725" stop="13732"/>
                    <exon start="13823" stop="14017"/>
                    <exon start="15978" stop="16164"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>387</number_coding_nucleotides>
                  <number_encoded_amino_acids>129</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>ENNPFVMECLKEFYASYDDTQLRWNGADLLTRVASNFSVNGNLSSRKREIKFQPSFVFFPIGHNNITRYFSAPAMETEKTKQDTLFKTILKEAVTFHFWNGLTSAMVPEAGSLAHRLINYNCLRCSDTL*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="2">
          <exon_coordinates>
            <exon e_start="11280" e_stop="11554"/>
            <exon e_start="11997" e_stop="12146"/>
            <exon e_start="13196" e_stop="13330"/>
            <exon e_start="13823" e_stop="14017"/>
            <exon e_start="15978" e_stop="16490"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.975" acc_prob="0.976" e_score="1.000"/>
          <exon-intron don_prob="0.995" acc_prob="0.993" e_score="1.000"/>
          <exon-intron don_prob="0.945" acc_prob="0.977" e_score="1.000"/>
          <exon-intron don_prob="0.993" acc_prob="0.999" e_score="1.000"/>
          <exon-only e_score="0.930"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="11280" e_stop="11554" e_length="275"/>
          </exon>
          <intron i_serial="1" don_prob="0.975" acc_prob="0.976">
            <gDNA_intron_boundary i_start="11555" i_stop="11996" i_length="442"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="11997" e_stop="12146" e_length="150"/>
          </exon>
          <intron i_serial="2" don_prob="0.995" acc_prob="0.993">
            <gDNA_intron_boundary i_start="12147" i_stop="13195" i_length="1049"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="13196" e_stop="13330" e_length="135"/>
          </exon>
          <intron i_serial="3" don_prob="0.945" acc_prob="0.977">
            <gDNA_intron_boundary i_start="13331" i_stop="13822" i_length="492"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="13823" e_stop="14017" e_length="195"/>
          </exon>
          <intron i_serial="4" don_prob="0.993" acc_prob="0.999">
            <gDNA_intron_boundary i_start="14018" i_stop="15977" i_length="1960"/>
          </intron>
          <exon e_serial="5" e_score="0.930">
            <gDNA_exon_boundary e_start="15978" e_stop="16490" e_length="513"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="11280" stop="11554"/>
              <exon start="11997" stop="12146"/>
              <exon start="13196" stop="13330"/>
              <exon start="13823" stop="14017"/>
              <exon start="15978" stop="16064"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E708557" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="11442" stop="11554"/>
              <exon start="11997" stop="12146"/>
              <exon start="13196" stop="13330"/>
              <exon start="13823" stop="14017"/>
              <exon start="15978" stop="16301"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E688142" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="11443" stop="11554"/>
              <exon start="11997" stop="12146"/>
              <exon start="13196" stop="13319"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E335968" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="13856" stop="14017"/>
              <exon start="15978" stop="16490"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E371096" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="2" AGS_serial="2" gDNA_strand="+"/>
          <translation>
            <gDNA_template>GAAGTTTCTGGGCTAGTCTTTGCTGATGGGAAGAGATGGGGTTACTTTCCGGGCTTGCACCCCCGGTTGTCTTTCACTAACTTTATGGACTCATTTTTCAGGAAAGCAAAATGTACTATGAGAGTTTTCATGGTCTGGAATTCTCCAGCATGGATGTTTACGGCTCGGTATCAGAGGGGACTTGAGAGTGTACTTAACCGTCACCGGGATGCTTGTGTGGTGGTTTTCTCTGAGACAATCGAACTTAATTTCTTTAGTGGTTTTGTGAAGGATGG : CTTCAAAGTGGCTGTTGTGATGCCTAATCTTGATGAGCTCCTACTAGGCACACCAACACATGTATTTGCTTCTTTCTGGTATGAATGGAAGCAGACAAGACATTATCCTTTCCATTACAGTGAACTAGTCAGGCTGGCAGCTCTATACAA : ATATGGTGGAATCTATCTTGACTCAGACATCATAGTGTTGAATTCATTGTCTTCACTTAGTAATACTGTTGCTTTTGAGGATGACCGACGTGGAAAAACTTTGAATGGTGCTGTAATGGCTTTTAGAAAGCACAG : TCCTTTTGTAATGGAGTGTTTGAAGGAGTTTTATGCATCTTATGACGACACACAATTGAGATGGAATGGAGCTGATCTTTTGACAAGAGTTGCTAGTAACTTTTCCGTCAATGGTAATCTTTCCAGTAGAAAGAGGGAGATCAAATTTCAACCCTCGTTTGTTTTCTTCCCCATCGGTCATAACAATATTACCAG : ATACTTCTCGGCACCAGCAATGGAAACTGAGAAAACTAAACAAGATACGCTGTTCAAAACTATCCTCAAAGAAGCTGTCACATTTCACTTTTGGAATGGCTTAACTTCAGCTATGGTTCCAGAGGCTGGCAGCCTTGCACACCGGCTCATTAATTACAATTGCCTACGTTGCTCTGACACATTGTGAAACACCATTAAAGCAGATGGATGACCTTTTAAAGCATTTTTGTTTTCATGCCATTAGATATACCTCACAGCTTTTAAAGATATTCCGGTGGTGCTTCATCCATGAATAATATATAAATTTTTGTTGTACAAAATATGAATCTCCAGTTGGTTGGCTTTCTGGACCTTGTCTATATTAGTTGTTGTAGATTCCCTCGAGGGACGAATTAAGAGGTCCTGCTTTTTGTAGCTGAGTTCTTACTGTATATTTCCCCTTGTGAGTTTTGTAGAACTATTTGTAGTCATTGGCAACAGGACAATGATATATTTAAATGATGTTCTTGTATG</gDNA_template>
            <first_frame> E  V  S  G  L  V  F  A  D  G  K  R  W  G  Y  F  P  G  L  H  P  R  L  S  F  T  N  F  M  D  S  F  F  R  K  A  K  C  T  M  R  V  F  M  V  W  N  S  P  A  W  M  F  T  A  R  Y  Q  R  G  L  E  S  V  L  N  R  H  R  D  A  C  V  V  V  F  S  E  T  I  E  L  N  F  F  S  G  F  V  K  D  G :   F  K  V  A  V  V  M  P  N  L  D  E  L  L  L  G  T  P  T  H  V  F  A  S  F  W  Y  E  W  K  Q  T  R  H  Y  P  F  H  Y  S  E  L  V  R  L  A  A  L  Y  K :   Y  G  G  I  Y  L  D  S  D  I  I  V  L  N  S  L  S  S  L  S  N  T  V  A  F  E  D  D  R  R  G  K  T  L  N  G  A  V  M  A  F  R  K  H  S :   P  F  V  M  E  C  L  K  E  F  Y  A  S  Y  D  D  T  Q  L  R  W  N  G  A  D  L  L  T  R  V  A  S  N  F  S  V  N  G  N  L  S  S  R  K  R  E  I  K  F  Q  P  S  F  V  F  F  P  I  G  H  N  N  I  T  R :   Y  F  S  A  P  A  M  E  T  E  K  T  K  Q  D  T  L  F  K  T  I  L  K  E  A  V  T  F  H  F  W  N  G  L  T  S  A  M  V  P  E  A  G  S  L  A  H  R  L  I  N  Y  N  C  L  R  C  S  D  T  L  *  N  T  I  K  A  D  G  *  P  F  K  A  F  L  F  S  C  H  *  I  Y  L  T  A  F  K  D  I  P  V  V  L  H  P  *  I  I  Y  K  F  L  L  Y  K  I  *  I  S  S  W  L  A  F  W  T  L  S  I  L  V  V  V  D  S  L  E  G  R  I  K  R  S  C  F  L  *  L  S  S  Y  C  I  F  P  L  V  S  F  V  E  L  F  V  V  I  G  N  R  T  M  I  Y  L  N  D  V  L  V   </first_frame>
            <second_frame>  K  F  L  G  *  S  L  L  M  G  R  D  G  V  T  F  R  A  C  T  P  G  C  L  S  L  T  L  W  T  H  F  S  G  K  Q  N  V  L  *  E  F  S  W  S  G  I  L  Q  H  G  C  L  R  L  G  I  R  G  D  L  R  V  Y  L  T  V  T  G  M  L  V  W  W  F  S  L  R  Q  S  N  L  I  S  L  V  V  L  *  R  M   : A  S  K  W  L  L  *  C  L  I  L  M  S  S  Y  *  A  H  Q  H  M  Y  L  L  L  S  G  M  N  G  S  R  Q  D  I  I  L  S  I  T  V  N  *  S  G  W  Q  L  Y  T   : N  M  V  E  S  I  L  T  Q  T  S  *  C  *  I  H  C  L  H  L  V  I  L  L  L  L  R  M  T  D  V  E  K  L  *  M  V  L  *  W  L  L  E  S  T   : V  L  L  *  W  S  V  *  R  S  F  M  H  L  M  T  T  H  N  *  D  G  M  E  L  I  F  *  Q  E  L  L  V  T  F  P  S  M  V  I  F  P  V  E  R  G  R  S  N  F  N  P  R  L  F  S  S  P  S  V  I  T  I  L  P   : D  T  S  R  H  Q  Q  W  K  L  R  K  L  N  K  I  R  C  S  K  L  S  S  K  K  L  S  H  F  T  F  G  M  A  *  L  Q  L  W  F  Q  R  L  A  A  L  H  T  G  S  L  I  T  I  A  Y  V  A  L  T  H  C  E  T  P  L  K  Q  M  D  D  L  L  K  H  F  C  F  H  A  I  R  Y  T  S  Q  L  L  K  I  F  R  W  C  F  I  H  E  *  Y  I  N  F  C  C  T  K  Y  E  S  P  V  G  W  L  S  G  P  C  L  Y  *  L  L  *  I  P  S  R  D  E  L  R  G  P  A  F  C  S  *  V  L  T  V  Y  F  P  L  *  V  L  *  N  Y  L  *  S  L  A  T  G  Q  *  Y  I  *  M  M  F  L  Y  </second_frame>
            <third_frame>   S  F  W  A  S  L  C  *  W  E  E  M  G  L  L  S  G  L  A  P  P  V  V  F  H  *  L  Y  G  L  I  F  Q  E  S  K  M  Y  Y  E  S  F  H  G  L  E  F  S  S  M  D  V  Y  G  S  V  S  E  G  T  *  E  C  T  *  P  S  P  G  C  L  C  G  G  F  L  *  D  N  R  T  *  F  L  *  W  F  C  E  G  W  :  L  Q  S  G  C  C  D  A  *  S  *  *  A  P  T  R  H  T  N  T  C  I  C  F  F  L  V  *  M  E  A  D  K  T  L  S  F  P  L  Q  *  T  S  Q  A  G  S  S  I  Q  :  I  W  W  N  L  S  *  L  R  H  H  S  V  E  F  I  V  F  T  *  *  Y  C  C  F  *  G  *  P  T  W  K  N  F  E  W  C  C  N  G  F  *  K  A  Q  :  S  F  C  N  G  V  F  E  G  V  L  C  I  L  *  R  H  T  I  E  M  E  W  S  *  S  F  D  K  S  C  *  *  L  F  R  Q  W  *  S  F  Q  *  K  E  G  D  Q  I  S  T  L  V  C  F  L  P  H  R  S  *  Q  Y  Y  Q  :  I  L  L  G  T  S  N  G  N  *  E  N  *  T  R  Y  A  V  Q  N  Y  P  Q  R  S  C  H  I  S  L  L  E  W  L  N  F  S  Y  G  S  R  G  W  Q  P  C  T  P  A  H  *  L  Q  L  P  T  L  L  *  H  I  V  K  H  H  *  S  R  W  M  T  F  *  S  I  F  V  F  M  P  L  D  I  P  H  S  F  *  R  Y  S  G  G  A  S  S  M  N  N  I  *  I  F  V  V  Q  N  M  N  L  Q  L  V  G  F  L  D  L  V  Y  I  S  C  C  R  F  P  R  G  T  N  *  E  V  L  L  F  V  A  E  F  L  L  Y  I  S  P  C  E  F  C  R  T  I  C  S  H  W  Q  Q  D  N  D  I  F  K  *  C  S  C  M </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02HBa0320M09.4" strand="+"/>
                <serials PGL_serial="2" AGS_serial="2" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="11280" stop="11554"/>
                    <exon start="11997" stop="12146"/>
                    <exon start="13196" stop="13330"/>
                    <exon start="13823" stop="14017"/>
                    <exon start="15978" stop="16164"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>939</number_coding_nucleotides>
                  <number_encoded_amino_acids>313</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>EVSGLVFADGKRWGYFPGLHPRLSFTNFMDSFFRKAKCTMRVFMVWNSPAWMFTARYQRGLESVLNRHRDACVVVFSETIELNFFSGFVKDGFKVAVVMPNLDELLLGTPTHVFASFWYEWKQTRHYPFHYSELVRLAALYKYGGIYLDSDIIVLNSLSSLSNTVAFEDDRRGKTLNGAVMAFRKHSPFVMECLKEFYASYDDTQLRWNGADLLTRVASNFSVNGNLSSRKREIKFQPSFVFFPIGHNNITRYFSAPAMETEKTKQDTLFKTILKEAVTFHFWNGLTSAMVPEAGSLAHRLINYNCLRCSDTL*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="3">
          <exon_coordinates>
            <exon e_start="15650" e_stop="16490"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.924"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.924">
            <gDNA_exon_boundary e_start="15650" e_stop="16490" e_length="841"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="15650" stop="16490"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E548273" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="2" AGS_serial="3" gDNA_strand="+"/>
          <translation>
            <gDNA_template>TAGCTGTGAGAGTAAAATATCTTTTTGAGACAAAAAACAGAATGGTCAGCTAATTCCCATCCAATCTTATTTGAAATCTTTGAACTCTCAAAAGGCGACCTTCTATATTTTGGGCTTCATTAGAGGTCATCTTTTTCACATGGTATTTAAGTGGACCACTGGCTCTTTTAAATGTCCTCTTTTAAAAAGTTTTTGAGTCCTTGATCCGTCTAAATATCTCATTCAGGGAGCTTTGGCAGAATCTGAACATGTCATGGTTTCTGTGATCTGTCATCATCATATCTGCTGGTTAAAGTTACATAATTTGCTTATCTCTTTCTTTTGACAGATACTTCTCGGCACCAGCAATGGAAACTGAGAAAACTAAACAAGATACGCTGTTCAAAACTATCCTCAAAGAAGCTGTCACATTTCACTTTTGGAATGGCTTAACTTCAGCTATGGTTCCAGAGGCTGGCAGCCTTGCACACCGGCTCATTAATTACAATTGCCTACGTTGCTCTGACACATTGTGAAACACCATTAAAGCAGATGGATGACCTTTTAAAGCATTTTTGTTTTCATGCCATTAGATATACCTCACAGCTTTTAAAGATATTCCGGTGGTGCTTCATCCATGAATAATATATAAATTTTTGTTGTACAAAATATGAATCTCCAGTTGGTTGGCTTTCTGGACCTTGTCTATATTAGTTGTTGTAGATTCCCTCGAGGGACGAATTAAGAGGTCCTGCTTTTTGTAGCTGAGTTCTTACTGTATATTTCCCCTTGTGAGTTTTGTAGAACTATTTGTAGTCATTGGCAACAGGACAATGATATATTTAAATGATGTTCTTGTATG</gDNA_template>
            <first_frame> *  L  *  E  *  N  I  F  L  R  Q  K  T  E  W  S  A  N  S  H  P  I  L  F  E  I  F  E  L  S  K  G  D  L  L  Y  F  G  L  H  *  R  S  S  F  S  H  G  I  *  V  D  H  W  L  F  *  M  S  S  F  K  K  F  L  S  P  *  S  V  *  I  S  H  S  G  S  F  G  R  I  *  T  C  H  G  F  C  D  L  S  S  S  Y  L  L  V  K  V  T  *  F  A  Y  L  F  L  L  T  D  T  S  R  H  Q  Q  W  K  L  R  K  L  N  K  I  R  C  S  K  L  S  S  K  K  L  S  H  F  T  F  G  M  A  *  L  Q  L  W  F  Q  R  L  A  A  L  H  T  G  S  L  I  T  I  A  Y  V  A  L  T  H  C  E  T  P  L  K  Q  M  D  D  L  L  K  H  F  C  F  H  A  I  R  Y  T  S  Q  L  L  K  I  F  R  W  C  F  I  H  E  *  Y  I  N  F  C  C  T  K  Y  E  S  P  V  G  W  L  S  G  P  C  L  Y  *  L  L  *  I  P  S  R  D  E  L  R  G  P  A  F  C  S  *  V  L  T  V  Y  F  P  L  *  V  L  *  N  Y  L  *  S  L  A  T  G  Q  *  Y  I  *  M  M  F  L  Y  </first_frame>
            <second_frame>  S  C  E  S  K  I  S  F  *  D  K  K  Q  N  G  Q  L  I  P  I  Q  S  Y  L  K  S  L  N  S  Q  K  A  T  F  Y  I  L  G  F  I  R  G  H  L  F  H  M  V  F  K  W  T  T  G  S  F  K  C  P  L  L  K  S  F  *  V  L  D  P  S  K  Y  L  I  Q  G  A  L  A  E  S  E  H  V  M  V  S  V  I  C  H  H  H  I  C  W  L  K  L  H  N  L  L  I  S  F  F  *  Q  I  L  L  G  T  S  N  G  N  *  E  N  *  T  R  Y  A  V  Q  N  Y  P  Q  R  S  C  H  I  S  L  L  E  W  L  N  F  S  Y  G  S  R  G  W  Q  P  C  T  P  A  H  *  L  Q  L  P  T  L  L  *  H  I  V  K  H  H  *  S  R  W  M  T  F  *  S  I  F  V  F  M  P  L  D  I  P  H  S  F  *  R  Y  S  G  G  A  S  S  M  N  N  I  *  I  F  V  V  Q  N  M  N  L  Q  L  V  G  F  L  D  L  V  Y  I  S  C  C  R  F  P  R  G  T  N  *  E  V  L  L  F  V  A  E  F  L  L  Y  I  S  P  C  E  F  C  R  T  I  C  S  H  W  Q  Q  D  N  D  I  F  K  *  C  S  C  M </second_frame>
            <third_frame>   A  V  R  V  K  Y  L  F  E  T  K  N  R  M  V  S  *  F  P  S  N  L  I  *  N  L  *  T  L  K  R  R  P  S  I  F  W  A  S  L  E  V  I  F  F  T  W  Y  L  S  G  P  L  A  L  L  N  V  L  F  *  K  V  F  E  S  L  I  R  L  N  I  S  F  R  E  L  W  Q  N  L  N  M  S  W  F  L  *  S  V  I  I  I  S  A  G  *  S  Y  I  I  C  L  S  L  S  F  D  R  Y  F  S  A  P  A  M  E  T  E  K  T  K  Q  D  T  L  F  K  T  I  L  K  E  A  V  T  F  H  F  W  N  G  L  T  S  A  M  V  P  E  A  G  S  L  A  H  R  L  I  N  Y  N  C  L  R  C  S  D  T  L  *  N  T  I  K  A  D  G  *  P  F  K  A  F  L  F  S  C  H  *  I  Y  L  T  A  F  K  D  I  P  V  V  L  H  P  *  I  I  Y  K  F  L  L  Y  K  I  *  I  S  S  W  L  A  F  W  T  L  S  I  L  V  V  V  D  S  L  E  G  R  I  K  R  S  C  F  L  *  L  S  S  Y  C  I  F  P  L  V  S  F  V  E  L  F  V  V  I  G  N  R  T  M  I  Y  L  N  D  V  L  V   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02HBa0320M09.4" strand="+"/>
                <serials PGL_serial="2" AGS_serial="3" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="15943" stop="16164"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>219</number_coding_nucleotides>
                  <number_encoded_amino_acids>73</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>SYIICLSLSFDRYFSAPAMETEKTKQDTLFKTILKEAVTFHFWNGLTSAMVPEAGSLAHRLINYNCLRCSDTL*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="3" PGL_strand="-" PGL_start="28724" PGL_stop="28279"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="28724" e_stop="28279"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.915"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.915">
            <gDNA_exon_boundary e_start="28724" e_stop="28279" e_length="446"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="28724" stop="28279"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E243215" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="3" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>TTATTGTAGATGACCAAATTTTTTATTCTAATACGAAATTAAATAACAATACACAAAAAAAAATAGTTTAAATTTTTTTTCTTTAAACTAAGGAATGAAAGAGAAAAACAAAATAAGAATAAGAAACTCAAATAATTATAATAAAAGAAGTCAAAAATTAATTTATGTATGAAAAAAATTAAAATATACCTTGAACTTTGATAGAAGAATCATATATACCCCTAAATAATTTTTTTTTAAAAATAGAAGCAACAAATATAAATTTGAAACAAATTTTTTAACTTCCGTTAAATGAAGGGTATATGTGAACCATTTTGTAACGGCAGGGGTATATGTGAGCCGTTTGTATAACGGTAAGGGCATATATGTGCCACTTTTATAACGAGGGGTATATCAGCTCTAAATGACAAAGTTGAGGGGTATATCAGACCCTTTTCCCTACTTTT</gDNA_template>
            <first_frame> L  L  *  M  T  K  F  F  I  L  I  R  N  *  I  T  I  H  K  K  K  *  F  K  F  F  F  F  K  L  R  N  E  R  E  K  Q  N  K  N  K  K  L  K  *  L  *  *  K  K  S  K  I  N  L  C  M  K  K  I  K  I  Y  L  E  L  *  *  K  N  H  I  Y  P  *  I  I  F  F  *  K  *  K  Q  Q  I  *  I  *  N  K  F  F  N  F  R  *  M  K  G  I  C  E  P  F  C  N  G  R  G  I  C  E  P  F  V  *  R  *  G  H  I  C  A  T  F  I  T  R  G  I  S  A  L  N  D  K  V  E  G  Y  I  R  P  F  S  L  L   </first_frame>
            <second_frame>  Y  C  R  *  P  N  F  L  F  *  Y  E  I  K  *  Q  Y  T  K  K  N  S  L  N  F  F  S  L  N  *  G  M  K  E  K  N  K  I  R  I  R  N  S  N  N  Y  N  K  R  S  Q  K  L  I  Y  V  *  K  K  L  K  Y  T  L  N  F  D  R  R  I  I  Y  T  P  K  *  F  F  F  K  N  R  S  N  K  Y  K  F  E  T  N  F  L  T  S  V  K  *  R  V  Y  V  N  H  F  V  T  A  G  V  Y  V  S  R  L  Y  N  G  K  G  I  Y  V  P  L  L  *  R  G  V  Y  Q  L  *  M  T  K  L  R  G  I  S  D  P  F  P  Y  F  </second_frame>
            <third_frame>   I  V  D  D  Q  I  F  Y  S  N  T  K  L  N  N  N  T  Q  K  K  I  V  *  I  F  F  L  *  T  K  E  *  K  R  K  T  K  *  E  *  E  T  Q  I  I  I  I  K  E  V  K  N  *  F  M  Y  E  K  N  *  N  I  P  *  T  L  I  E  E  S  Y  I  P  L  N  N  F  F  L  K  I  E  A  T  N  I  N  L  K  Q  I  F  *  L  P  L  N  E  G  Y  M  *  T  I  L  *  R  Q  G  Y  M  *  A  V  C  I  T  V  R  A  Y  M  C  H  F  Y  N  E  G  Y  I  S  S  K  *  Q  S  *  G  V  Y  Q  T  L  F  P  T  F </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <none gDNA_id="C02HBa0320M09.4"/>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="4" PGL_strand="-" PGL_start="45531" PGL_stop="40047"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="45531" e_stop="45485"/>
            <exon e_start="45385" e_stop="45264"/>
            <exon e_start="43557" e_stop="43487"/>
            <exon e_start="41984" e_stop="41882"/>
            <exon e_start="41769" e_stop="41516"/>
            <exon e_start="41411" e_stop="40764"/>
            <exon e_start="40058" e_stop="40047"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.353" acc_prob="1.000" e_score="0.979"/>
          <exon-intron don_prob="0.854" acc_prob="0.987" e_score="1.000"/>
          <exon-intron don_prob="0.905" acc_prob="0.758" e_score="1.000"/>
          <exon-intron don_prob="0.598" acc_prob="0.027" e_score="0.990"/>
          <exon-intron don_prob="0.773" acc_prob="0.977" e_score="1.000"/>
          <exon-intron don_prob="0.000" acc_prob="0.764" e_score="0.997"/>
          <exon-only e_score="0.667"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.979">
            <gDNA_exon_boundary e_start="45531" e_stop="45485" e_length="47"/>
          </exon>
          <intron i_serial="1" don_prob="0.353" acc_prob="1.000">
            <gDNA_intron_boundary i_start="45484" i_stop="45386" i_length="99"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="45385" e_stop="45264" e_length="122"/>
          </exon>
          <intron i_serial="2" don_prob="0.854" acc_prob="0.987">
            <gDNA_intron_boundary i_start="45263" i_stop="43558" i_length="1706"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="43557" e_stop="43487" e_length="71"/>
          </exon>
          <intron i_serial="3" don_prob="0.905" acc_prob="0.758">
            <gDNA_intron_boundary i_start="43486" i_stop="41985" i_length="1502"/>
          </intron>
          <exon e_serial="4" e_score="0.990">
            <gDNA_exon_boundary e_start="41984" e_stop="41882" e_length="103"/>
          </exon>
          <intron i_serial="4" don_prob="0.598" acc_prob="0.027">
            <gDNA_intron_boundary i_start="41881" i_stop="41770" i_length="112"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="41769" e_stop="41516" e_length="254"/>
          </exon>
          <intron i_serial="5" don_prob="0.773" acc_prob="0.977">
            <gDNA_intron_boundary i_start="41515" i_stop="41412" i_length="104"/>
          </intron>
          <exon e_serial="6" e_score="0.997">
            <gDNA_exon_boundary e_start="41411" e_stop="40764" e_length="648"/>
          </exon>
          <intron i_serial="6" don_prob="0.000" acc_prob="0.764">
            <gDNA_intron_boundary i_start="40763" i_stop="40059" i_length="705"/>
          </intron>
          <exon e_serial="7" e_score="0.667">
            <gDNA_exon_boundary e_start="40058" e_stop="40047" e_length="12"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="45531" stop="45485"/>
              <exon start="45385" stop="45264"/>
              <exon start="43557" stop="43487"/>
              <exon start="41984" stop="41882"/>
              <exon start="41769" stop="41516"/>
              <exon start="41411" stop="41334"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E395576" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="41746" stop="41516"/>
              <exon start="41411" stop="41135"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E314138" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="41667" stop="41516"/>
              <exon start="41411" stop="40764"/>
              <exon start="40058" stop="40047"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E541708" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="41591" stop="41516"/>
              <exon start="41411" stop="40807"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E550567" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="4" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>TTTCATGGCTGAATTTCTCTCTTGTGCACCACAACGCCATCAGAATG : CAGACAATAATGGCGAAGATGAAGGTGGTGAGGAGTGAAATTGCTGCGAAACAAGTGGTTGTGATCGAGGAAAATGAGGAGATACATTGGTATGCTTCTTGAATTTCGTCCGGAGGACACAG : CTACTCAAATCCAAATGCAAAGGATCTTCAAGAGTAAAGGAATAAAACAAGACCTTGGTTCATTGTGAAAG : TTTATGTGTGATCCATAGCTGAAAGTTTGGCATTTATCTCGGTTTTCCCTTCCTATTTGATTTTTTTTCAATAATCGCCGTTAGGTCAATTCTGCTATTTAAG : TCAAGTTTCAACCAGCTTTTGGGAATTCTGGAAGTCACGTGCTCATCAAAGTAAATTTTATATACACTGATGCAACGGTCTATCTCCACAATGGGTGTTCAAATCCAGTGGTGCATTGTGACTTGAAGCCAAGTGTCTTGCTTGATCAAGACATGGTTGGCCATGTCAGTGATTTTGGCATTGCAAAATTGTTAGGTGCAGGGGAGAGTTTTGTTCAAACAAGGACAATAGCAACCATTGGATAATTGCTCCAG : AGTATGGACAAGATGGAATCGTATCCACAAGCTGCGATGTTTATAGTTTCGGTATCCTGATTGATGGAGACGTTTACAAGAATCAGACCAGGTGATGAAAGATTTACTGGAGAGTTGAGCATACGACGTTGGGTTAGTGATTCTTTTCCAGATGAGATTCATAAGGTGGTGGATGCTAATTTGGTACAGCCTAGGGGATGAACGAATTGACGCAAAGATGCAGTGTCTGTTGTCTATTATAGAGTTAGCTTTGAGCTGTACTTTAGCAACACCTGATGCAAGAATTAGTATGGAAGATTCTCTTTCAACACTTCAAAATATCAGGCTCCAGTTTGTCAATAGTCGCCACCGAAAAAAGCAACTGAAGGATTTAGTACCGAAAAAAGCAACTTGCTTGGTAATGGCAAGGTCTACAATGTACAATTGGAGGGTGCATTCAAAAGTTTTGATACAGAAGAATGTGAAATCTGACCAAAGTCATCAAAGCCTTAATGTTAGAATACATGTCTAGTGGGACACTTGATAAATGGCTGTACTCTCACAAGTTGTTCTTGGATTTACTTCATATTATGTACTCTTTCACTTTCAGTGCCAGCTGGAATGGTGATTTTCTAGCTACTGGAGTTCACAATTCTAATCCATAATTAA : GAAAAGGAGAAA</gDNA_template>
            <first_frame> F  H  G  *  I  S  L  L  C  T  T  T  P  S  E  C :   R  Q  *  W  R  R  *  R  W  *  G  V  K  L  L  R  N  K  W  L  *  S  R  K  M  R  R  Y  I  G  M  L  L  E  F  R  P  E  D  T   : A  T  Q  I  Q  M  Q  R  I  F  K  S  K  G  I  K  Q  D  L  G  S  L  *  K  :  F  M  C  D  P  *  L  K  V  W  H  L  S  R  F  S  L  P  I  *  F  F  F  N  N  R  R  *  V  N  S  A  I  *   : V  K  F  Q  P  A  F  G  N  S  G  S  H  V  L  I  K  V  N  F  I  Y  T  D  A  T  V  Y  L  H  N  G  C  S  N  P  V  V  H  C  D  L  K  P  S  V  L  L  D  Q  D  M  V  G  H  V  S  D  F  G  I  A  K  L  L  G  A  G  E  S  F  V  Q  T  R  T  I  A  T  I  G  *  L  L  Q  :  S  M  D  K  M  E  S  Y  P  Q  A  A  M  F  I  V  S  V  S  *  L  M  E  T  F  T  R  I  R  P  G  D  E  R  F  T  G  E  L  S  I  R  R  W  V  S  D  S  F  P  D  E  I  H  K  V  V  D  A  N  L  V  Q  P  R  G  *  T  N  *  R  K  D  A  V  S  V  V  Y  Y  R  V  S  F  E  L  Y  F  S  N  T  *  C  K  N  *  Y  G  R  F  S  F  N  T  S  K  Y  Q  A  P  V  C  Q  *  S  P  P  K  K  A  T  E  G  F  S  T  E  K  S  N  L  L  G  N  G  K  V  Y  N  V  Q  L  E  G  A  F  K  S  F  D  T  E  E  C  E  I  *  P  K  S  S  K  P  *  C  *  N  T  C  L  V  G  H  L  I  N  G  C  T  L  T  S  C  S  W  I  Y  F  I  L  C  T  L  S  L  S  V  P  A  G  M  V  I  F  *  L  L  E  F  T  I  L  I  H  N  *  :  E  K  E  K </first_frame>
            <second_frame>  F  M  A  E  F  L  S  C  A  P  Q  R  H  Q  N   : A  D  N  N  G  E  D  E  G  G  E  E  *  N  C  C  E  T  S  G  C  D  R  G  K  *  G  D  T  L  V  C  F  L  N  F  V  R  R  T  Q  :  L  L  K  S  K  C  K  G  S  S  R  V  K  E  *  N  K  T  L  V  H  C  E  S :   L  C  V  I  H  S  *  K  F  G  I  Y  L  G  F  P  F  L  F  D  F  F  S  I  I  A  V  R  S  I  L  L  F  K  :  S  S  F  N  Q  L  L  G  I  L  E  V  T  C  S  S  K  *  I  L  Y  T  L  M  Q  R  S  I  S  T  M  G  V  Q  I  Q  W  C  I  V  T  *  S  Q  V  S  C  L  I  K  T  W  L  A  M  S  V  I  L  A  L  Q  N  C  *  V  Q  G  R  V  L  F  K  Q  G  Q  *  Q  P  L  D  N  C  S  R :   V  W  T  R  W  N  R  I  H  K  L  R  C  L  *  F  R  Y  P  D  *  W  R  R  L  Q  E  S  D  Q  V  M  K  D  L  L  E  S  *  A  Y  D  V  G  L  V  I  L  F  Q  M  R  F  I  R  W  W  M  L  I  W  Y  S  L  G  D  E  R  I  D  A  K  M  Q  C  L  L  S  I  I  E  L  A  L  S  C  T  L  A  T  P  D  A  R  I  S  M  E  D  S  L  S  T  L  Q  N  I  R  L  Q  F  V  N  S  R  H  R  K  K  Q  L  K  D  L  V  P  K  K  A  T  C  L  V  M  A  R  S  T  M  Y  N  W  R  V  H  S  K  V  L  I  Q  K  N  V  K  S  D  Q  S  H  Q  S  L  N  V  R  I  H  V  *  W  D  T  *  *  M  A  V  L  S  Q  V  V  L  G  F  T  S  Y  Y  V  L  F  H  F  Q  C  Q  L  E  W  *  F  S  S  Y  W  S  S  Q  F  *  S  I  I  K :   K  R  R   </second_frame>
            <third_frame>   S  W  L  N  F  S  L  V  H  H  N  A  I  R  M  :  Q  T  I  M  A  K  M  K  V  V  R  S  E  I  A  A  K  Q  V  V  V  I  E  E  N  E  E  I  H  W  Y  A  S  *  I  S  S  G  G  H  S :   Y  S  N  P  N  A  K  D  L  Q  E  *  R  N  K  T  R  P  W  F  I  V  K   : V  Y  V  *  S  I  A  E  S  L  A  F  I  S  V  F  P  S  Y  L  I  F  F  Q  *  S  P  L  G  Q  F  C  Y  L  S :   Q  V  S  T  S  F  W  E  F  W  K  S  R  A  H  Q  S  K  F  Y  I  H  *  C  N  G  L  S  P  Q  W  V  F  K  S  S  G  A  L  *  L  E  A  K  C  L  A  *  S  R  H  G  W  P  C  Q  *  F  W  H  C  K  I  V  R  C  R  G  E  F  C  S  N  K  D  N  S  N  H  W  I  I  A  P   : E  Y  G  Q  D  G  I  V  S  T  S  C  D  V  Y  S  F  G  I  L  I  D  G  D  V  Y  K  N  Q  T  R  *  *  K  I  Y  W  R  V  E  H  T  T  L  G  *  *  F  F  S  R  *  D  S  *  G  G  G  C  *  F  G  T  A  *  G  M  N  E  L  T  Q  R  C  S  V  C  C  L  L  *  S  *  L  *  A  V  L  *  Q  H  L  M  Q  E  L  V  W  K  I  L  F  Q  H  F  K  I  S  G  S  S  L  S  I  V  A  T  E  K  S  N  *  R  I  *  Y  R  K  K  Q  L  A  W  *  W  Q  G  L  Q  C  T  I  G  G  C  I  Q  K  F  *  Y  R  R  M  *  N  L  T  K  V  I  K  A  L  M  L  E  Y  M  S  S  G  T  L  D  K  W  L  Y  S  H  K  L  F  L  D  L  L  H  I  M  Y  S  F  T  F  S  A  S  W  N  G  D  F  L  A  T  G  V  H  N  S  N  P  *  L   : R  K  G  E  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02HBa0320M09.4" strand="-"/>
                <serials PGL_serial="4" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="41293" stop="40901"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>390</number_coding_nucleotides>
                  <number_encoded_amino_acids>130</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>AYDVGLVILFQMRFIRWWMLIWYSLGDERIDAKMQCLLSIIELALSCTLATPDARISMEDSLSTLQNIRLQFVNSRHRKKQLKDLVPKKATCLVMARSTMYNWRVHSKVLIQKNVKSDQSHQSLNVRIHV*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C02HBa0320M09.4" strand="-"/>
                <serials PGL_serial="4" AGS_serial="1" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="41882" stop="41525"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>243</number_coding_nucleotides>
                  <number_encoded_amino_acids>81</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>VKFQPAFGNSGSHVLIKVNFIYTDATVYLHNGCSNPVVHCDLKPSVLLDQDMVGHVSDFGIAKLLGAGESFVQTRTIATIG*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="2">
          <exon_coordinates>
            <exon e_start="41785" e_stop="41516"/>
            <exon e_start="41411" e_stop="40764"/>
            <exon e_start="40058" e_stop="40047"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.773" acc_prob="0.977" e_score="0.989"/>
          <exon-intron don_prob="0.000" acc_prob="0.764" e_score="0.997"/>
          <exon-only e_score="0.667"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.989">
            <gDNA_exon_boundary e_start="41785" e_stop="41516" e_length="270"/>
          </exon>
          <intron i_serial="1" don_prob="0.773" acc_prob="0.977">
            <gDNA_intron_boundary i_start="41515" i_stop="41412" i_length="104"/>
          </intron>
          <exon e_serial="2" e_score="0.997">
            <gDNA_exon_boundary e_start="41411" e_stop="40764" e_length="648"/>
          </exon>
          <intron i_serial="2" don_prob="0.000" acc_prob="0.764">
            <gDNA_intron_boundary i_start="40763" i_stop="40059" i_length="705"/>
          </intron>
          <exon e_serial="3" e_score="0.667">
            <gDNA_exon_boundary e_start="40058" e_stop="40047" e_length="12"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="41785" stop="41516"/>
              <exon start="41411" stop="40769"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E734152" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="41746" stop="41516"/>
              <exon start="41411" stop="41135"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E314138" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="41667" stop="41516"/>
              <exon start="41411" stop="40764"/>
              <exon start="40058" stop="40047"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E541708" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="41591" stop="41516"/>
              <exon start="41411" stop="40807"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E550567" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="4" AGS_serial="2" gDNA_strand="-"/>
          <translation>
            <gDNA_template>TATCATACATACATAGTCAAGTTTCAACCAGCTTTTGGGAATTCTGGAAGTCACGTGCTCATCAAAGTAAATTTTATATACACTGATGCAACGGTCTATCTCCACAATGGGTGTTCAAATCCAGTGGTGCATTGTGACTTGAAGCCAAGTGTCTTGCTTGATCAAGACATGGTTGGCCATGTCAGTGATTTTGGCATTGCAAAATTGTTAGGTGCAGGGGAGAGTTTTGTTCAAACAAGGACAATAGCAACCATTGGATAATTGCTCCAG : AGTATGGACAAGATGGAATCGTATCCACAAGCTGCGATGTTTATAGTTTCGGTATCCTGATTGATGGAGACGTTTACAAGAATCAGACCAGGTGATGAAAGATTTACTGGAGAGTTGAGCATACGACGTTGGGTTAGTGATTCTTTTCCAGATGAGATTCATAAGGTGGTGGATGCTAATTTGGTACAGCCTAGGGGATGAACGAATTGACGCAAAGATGCAGTGTCTGTTGTCTATTATAGAGTTAGCTTTGAGCTGTACTTTAGCAACACCTGATGCAAGAATTAGTATGGAAGATTCTCTTTCAACACTTCAAAATATCAGGCTCCAGTTTGTCAATAGTCGCCACCGAAAAAAGCAACTGAAGGATTTAGTACCGAAAAAAGCAACTTGCTTGGTAATGGCAAGGTCTACAATGTACAATTGGAGGGTGCATTCAAAAGTTTTGATACAGAAGAATGTGAAATCTGACCAAAGTCATCAAAGCCTTAATGTTAGAATACATGTCTAGTGGGACACTTGATAAATGGCTGTACTCTCACAAGTTGTTCTTGGATTTACTTCATATTATGTACTCTTTCACTTTCAGTGCCAGCTGGAATGGTGATTTTCTAGCTACTGGAGTTCACAATTCTAATCCATAATTAA : GAAAAGGAGAAA</gDNA_template>
            <first_frame> Y  H  T  Y  I  V  K  F  Q  P  A  F  G  N  S  G  S  H  V  L  I  K  V  N  F  I  Y  T  D  A  T  V  Y  L  H  N  G  C  S  N  P  V  V  H  C  D  L  K  P  S  V  L  L  D  Q  D  M  V  G  H  V  S  D  F  G  I  A  K  L  L  G  A  G  E  S  F  V  Q  T  R  T  I  A  T  I  G  *  L  L  Q  :  S  M  D  K  M  E  S  Y  P  Q  A  A  M  F  I  V  S  V  S  *  L  M  E  T  F  T  R  I  R  P  G  D  E  R  F  T  G  E  L  S  I  R  R  W  V  S  D  S  F  P  D  E  I  H  K  V  V  D  A  N  L  V  Q  P  R  G  *  T  N  *  R  K  D  A  V  S  V  V  Y  Y  R  V  S  F  E  L  Y  F  S  N  T  *  C  K  N  *  Y  G  R  F  S  F  N  T  S  K  Y  Q  A  P  V  C  Q  *  S  P  P  K  K  A  T  E  G  F  S  T  E  K  S  N  L  L  G  N  G  K  V  Y  N  V  Q  L  E  G  A  F  K  S  F  D  T  E  E  C  E  I  *  P  K  S  S  K  P  *  C  *  N  T  C  L  V  G  H  L  I  N  G  C  T  L  T  S  C  S  W  I  Y  F  I  L  C  T  L  S  L  S  V  P  A  G  M  V  I  F  *  L  L  E  F  T  I  L  I  H  N  *  :  E  K  E  K </first_frame>
            <second_frame>  I  I  H  T  *  S  S  F  N  Q  L  L  G  I  L  E  V  T  C  S  S  K  *  I  L  Y  T  L  M  Q  R  S  I  S  T  M  G  V  Q  I  Q  W  C  I  V  T  *  S  Q  V  S  C  L  I  K  T  W  L  A  M  S  V  I  L  A  L  Q  N  C  *  V  Q  G  R  V  L  F  K  Q  G  Q  *  Q  P  L  D  N  C  S  R :   V  W  T  R  W  N  R  I  H  K  L  R  C  L  *  F  R  Y  P  D  *  W  R  R  L  Q  E  S  D  Q  V  M  K  D  L  L  E  S  *  A  Y  D  V  G  L  V  I  L  F  Q  M  R  F  I  R  W  W  M  L  I  W  Y  S  L  G  D  E  R  I  D  A  K  M  Q  C  L  L  S  I  I  E  L  A  L  S  C  T  L  A  T  P  D  A  R  I  S  M  E  D  S  L  S  T  L  Q  N  I  R  L  Q  F  V  N  S  R  H  R  K  K  Q  L  K  D  L  V  P  K  K  A  T  C  L  V  M  A  R  S  T  M  Y  N  W  R  V  H  S  K  V  L  I  Q  K  N  V  K  S  D  Q  S  H  Q  S  L  N  V  R  I  H  V  *  W  D  T  *  *  M  A  V  L  S  Q  V  V  L  G  F  T  S  Y  Y  V  L  F  H  F  Q  C  Q  L  E  W  *  F  S  S  Y  W  S  S  Q  F  *  S  I  I  K :   K  R  R   </second_frame>
            <third_frame>   S  Y  I  H  S  Q  V  S  T  S  F  W  E  F  W  K  S  R  A  H  Q  S  K  F  Y  I  H  *  C  N  G  L  S  P  Q  W  V  F  K  S  S  G  A  L  *  L  E  A  K  C  L  A  *  S  R  H  G  W  P  C  Q  *  F  W  H  C  K  I  V  R  C  R  G  E  F  C  S  N  K  D  N  S  N  H  W  I  I  A  P   : E  Y  G  Q  D  G  I  V  S  T  S  C  D  V  Y  S  F  G  I  L  I  D  G  D  V  Y  K  N  Q  T  R  *  *  K  I  Y  W  R  V  E  H  T  T  L  G  *  *  F  F  S  R  *  D  S  *  G  G  G  C  *  F  G  T  A  *  G  M  N  E  L  T  Q  R  C  S  V  C  C  L  L  *  S  *  L  *  A  V  L  *  Q  H  L  M  Q  E  L  V  W  K  I  L  F  Q  H  F  K  I  S  G  S  S  L  S  I  V  A  T  E  K  S  N  *  R  I  *  Y  R  K  K  Q  L  A  W  *  W  Q  G  L  Q  C  T  I  G  G  C  I  Q  K  F  *  Y  R  R  M  *  N  L  T  K  V  I  K  A  L  M  L  E  Y  M  S  S  G  T  L  D  K  W  L  Y  S  H  K  L  F  L  D  L  L  H  I  M  Y  S  F  T  F  S  A  S  W  N  G  D  F  L  A  T  G  V  H  N  S  N  P  *  L   : R  K  G  E  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02HBa0320M09.4" strand="-"/>
                <serials PGL_serial="4" AGS_serial="2" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="41293" stop="40901"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>390</number_coding_nucleotides>
                  <number_encoded_amino_acids>130</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>AYDVGLVILFQMRFIRWWMLIWYSLGDERIDAKMQCLLSIIELALSCTLATPDARISMEDSLSTLQNIRLQFVNSRHRKKQLKDLVPKKATCLVMARSTMYNWRVHSKVLIQKNVKSDQSHQSLNVRIHV*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C02HBa0320M09.4" strand="-"/>
                <serials PGL_serial="4" AGS_serial="2" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="41785" stop="41525"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>258</number_coding_nucleotides>
                  <number_encoded_amino_acids>86</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>YHTYIVKFQPAFGNSGSHVLIKVNFIYTDATVYLHNGCSNPVVHCDLKPSVLLDQDMVGHVSDFGIAKLLGAGESFVQTRTIATIG*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="3">
          <exon_coordinates>
            <exon e_start="42821" e_stop="42125"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.999"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.999">
            <gDNA_exon_boundary e_start="42821" e_stop="42125" e_length="697"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="42821" stop="42125"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E548594" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="42820" stop="42297"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E299724" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="4" AGS_serial="3" gDNA_strand="-"/>
          <translation>
            <gDNA_template>AGTTTTTCATTTGGCTTTTTGTGTGATTAAAACGCATGGTAGATTTTGTAATTATGTATTATTTTGCATTGTTATGAAAAGAAAAATTCTTTATTTTCGTGTTAAACTTTCAAGTGTTATTTAACTGACAAAATTTCTATTTATACATGATGAGTTTGATAATATTTGAATGTTTTATGCATAATAGTGATGTTAGGGGAAATATATATATTCGTGATATTCACGTGCTTTGTCGAGAACTAGTGCATCATTAATAAGAGTAAGTTTTTCTCGTGAAGCATTTGGCTTTTTGGTTGATTAAAACGCATGGTAGATTTTGTATAACTTTCCATATAAACTTCCTGAAAGCTTTCAAATGCTCCTTTTTTATGTATGAATTTATTTCTAAAAAATGGCTCTGTCCCTGTTGAATCAAGGAGGTTAACATCGAAGCTTAGATATAAGAAAGAACTGTTGTCTGCCTGCCTGCATATTGGTATTTTCTTTTCTTTGTTTTGAATTCATGTCCATTTTCAGTCTCTTCTGAGTATTAAGTAAGTTGGCATCTCTGTTTTATGTATGCTGAGATTGTCCAATGAACCAAATGATTGGGGATATATAGCTATGTATCATCTTCTATATCACTAAGTTAAGGGATGTATCTTCTTTATCACTAAGTTAAGGGTAAGACTCAGTTTTCTTTCTTTAATCGCTATTG</gDNA_template>
            <first_frame> S  F  S  F  G  F  L  C  D  *  N  A  W  *  I  L  *  L  C  I  I  L  H  C  Y  E  K  K  N  S  L  F  S  C  *  T  F  K  C  Y  L  T  D  K  I  S  I  Y  T  *  *  V  *  *  Y  L  N  V  L  C  I  I  V  M  L  G  E  I  Y  I  F  V  I  F  T  C  F  V  E  N  *  C  I  I  N  K  S  K  F  F  S  *  S  I  W  L  F  G  *  L  K  R  M  V  D  F  V  *  L  S  I  *  T  S  *  K  L  S  N  A  P  F  L  C  M  N  L  F  L  K  N  G  S  V  P  V  E  S  R  R  L  T  S  K  L  R  Y  K  K  E  L  L  S  A  C  L  H  I  G  I  F  F  S  L  F  *  I  H  V  H  F  Q  S  L  L  S  I  K  *  V  G  I  S  V  L  C  M  L  R  L  S  N  E  P  N  D  W  G  Y  I  A  M  Y  H  L  L  Y  H  *  V  K  G  C  I  F  F  I  T  K  L  R  V  R  L  S  F  L  S  L  I  A  I  </first_frame>
            <second_frame>  V  F  H  L  A  F  C  V  I  K  T  H  G  R  F  C  N  Y  V  L  F  C  I  V  M  K  R  K  I  L  Y  F  R  V  K  L  S  S  V  I  *  L  T  K  F  L  F  I  H  D  E  F  D  N  I  *  M  F  Y  A  *  *  *  C  *  G  K  Y  I  Y  S  *  Y  S  R  A  L  S  R  T  S  A  S  L  I  R  V  S  F  S  R  E  A  F  G  F  L  V  D  *  N  A  W  *  I  L  Y  N  F  P  Y  K  L  P  E  S  F  Q  M  L  L  F  Y  V  *  I  Y  F  *  K  M  A  L  S  L  L  N  Q  G  G  *  H  R  S  L  D  I  R  K  N  C  C  L  P  A  C  I  L  V  F  S  F  L  C  F  E  F  M  S  I  F  S  L  F  *  V  L  S  K  L  A  S  L  F  Y  V  C  *  D  C  P  M  N  Q  M  I  G  D  I  *  L  C  I  I  F  Y  I  T  K  L  R  D  V  S  S  L  S  L  S  *  G  *  D  S  V  F  F  L  *  S  L  L </second_frame>
            <third_frame>   F  F  I  W  L  F  V  *  L  K  R  M  V  D  F  V  I  M  Y  Y  F  A  L  L  *  K  E  K  F  F  I  F  V  L  N  F  Q  V  L  F  N  *  Q  N  F  Y  L  Y  M  M  S  L  I  I  F  E  C  F  M  H  N  S  D  V  R  G  N  I  Y  I  R  D  I  H  V  L  C  R  E  L  V  H  H  *  *  E  *  V  F  L  V  K  H  L  A  F  W  L  I  K  T  H  G  R  F  C  I  T  F  H  I  N  F  L  K  A  F  K  C  S  F  F  M  Y  E  F  I  S  K  K  W  L  C  P  C  *  I  K  E  V  N  I  E  A  *  I  *  E  R  T  V  V  C  L  P  A  Y  W  Y  F  L  F  F  V  L  N  S  C  P  F  S  V  S  S  E  Y  *  V  S  W  H  L  C  F  M  Y  A  E  I  V  Q  *  T  K  *  L  G  I  Y  S  Y  V  S  S  S  I  S  L  S  *  G  M  Y  L  L  Y  H  *  V  K  G  K  T  Q  F  S  F  F  N  R  Y   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <none gDNA_id="C02HBa0320M09.4"/>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="4">
          <exon_coordinates>
            <exon e_start="45474" e_stop="45264"/>
            <exon e_start="43557" e_stop="43531"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.854" acc_prob="0.987" e_score="0.938"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.938">
            <gDNA_exon_boundary e_start="45474" e_stop="45264" e_length="211"/>
          </exon>
          <intron i_serial="1" don_prob="0.854" acc_prob="0.987">
            <gDNA_intron_boundary i_start="45263" i_stop="43558" i_length="1706"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="43557" e_stop="43531" e_length="27"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="45474" stop="45264"/>
              <exon start="43557" stop="43531"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E243333" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="4" AGS_serial="4" gDNA_strand="-"/>
          <translation>
            <gDNA_template>CAATTCCCCTCTCAATGAATTTCCCAATTCCCCATTCAATTTTACTTCTTTTTGGATAAAAAATAATAAGTGTTTGTGTGTGTATGCAGCAGACAATAATGGCGAAGATGAAGGTGGTGAGGAGTGAAATTGCTGCGAAACAAGTGGTTGTGATCGAGGAAAATGAGGAGATACATTGGTATGCTTCTTGAATTTCGTCCGGAGGACACAG : CTACTCAAATCCAAATGCAAAGGATCT</gDNA_template>
            <first_frame> Q  F  P  S  Q  *  I  S  Q  F  P  I  Q  F  Y  F  F  L  D  K  K  *  *  V  F  V  C  V  C  S  R  Q  *  W  R  R  *  R  W  *  G  V  K  L  L  R  N  K  W  L  *  S  R  K  M  R  R  Y  I  G  M  L  L  E  F  R  P  E  D  T   : A  T  Q  I  Q  M  Q  R  I  </first_frame>
            <second_frame>  N  S  P  L  N  E  F  P  N  S  P  F  N  F  T  S  F  W  I  K  N  N  K  C  L  C  V  Y  A  A  D  N  N  G  E  D  E  G  G  E  E  *  N  C  C  E  T  S  G  C  D  R  G  K  *  G  D  T  L  V  C  F  L  N  F  V  R  R  T  Q  :  L  L  K  S  K  C  K  G  S </second_frame>
            <third_frame>   I  P  L  S  M  N  F  P  I  P  H  S  I  L  L  L  F  G  *  K  I  I  S  V  C  V  C  M  Q  Q  T  I  M  A  K  M  K  V  V  R  S  E  I  A  A  K  Q  V  V  V  I  E  E  N  E  E  I  H  W  Y  A  S  *  I  S  S  G  G  H  S :   Y  S  N  P  N  A  K  D   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <none gDNA_id="C02HBa0320M09.4"/>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="5" PGL_strand="+" PGL_start="40772" PGL_stop="41108"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="40772" e_stop="41108"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.958"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.958">
            <gDNA_exon_boundary e_start="40772" e_stop="41108" e_length="337"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="40772" stop="41108"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E205032" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="5" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>GGATTAGAATTGTGAACTCCAGTAGCTAGAAAATCACCATTCCAGCTGGCACTGAAAGTGAAAGAGTACATAATATGAAGTAAATCCAAGAACAACTTGTGAGAGTACAGCCATTTATCAAGTGTCCCACTAGACATGTATTCTAACATTAAGGCTTTGATGACTTTGGTCAGATTTCACATTCTTCTGTATCAAAACTTTTGAATGCACCCTCCAATTGTACATTGTAGACCTTGCCATTACCAAGCAAGTTGCTTTTTTCGGTACTAAATCCTTCAGTTGCTTTTTTCGGTGGCGACTATTGACAAACTGGAGCCTGATATTTTGAAGTGTTGAA</gDNA_template>
            <first_frame> G  L  E  L  *  T  P  V  A  R  K  S  P  F  Q  L  A  L  K  V  K  E  Y  I  I  *  S  K  S  K  N  N  L  *  E  Y  S  H  L  S  S  V  P  L  D  M  Y  S  N  I  K  A  L  M  T  L  V  R  F  H  I  L  L  Y  Q  N  F  *  M  H  P  P  I  V  H  C  R  P  C  H  Y  Q  A  S  C  F  F  R  Y  *  I  L  Q  L  L  F  S  V  A  T  I  D  K  L  E  P  D  I  L  K  C  *  </first_frame>
            <second_frame>  D  *  N  C  E  L  Q  *  L  E  N  H  H  S  S  W  H  *  K  *  K  S  T  *  Y  E  V  N  P  R  T  T  C  E  S  T  A  I  Y  Q  V  S  H  *  T  C  I  L  T  L  R  L  *  *  L  W  S  D  F  T  F  F  C  I  K  T  F  E  C  T  L  Q  L  Y  I  V  D  L  A  I  T  K  Q  V  A  F  F  G  T  K  S  F  S  C  F  F  R  W  R  L  L  T  N  W  S  L  I  F  *  S  V  E </second_frame>
            <third_frame>   I  R  I  V  N  S  S  S  *  K  I  T  I  P  A  G  T  E  S  E  R  V  H  N  M  K  *  I  Q  E  Q  L  V  R  V  Q  P  F  I  K  C  P  T  R  H  V  F  *  H  *  G  F  D  D  F  G  Q  I  S  H  S  S  V  S  K  L  L  N  A  P  S  N  C  T  L  *  T  L  P  L  P  S  K  L  L  F  S  V  L  N  P  S  V  A  F  F  G  G  D  Y  *  Q  T  G  A  *  Y  F  E  V  L   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <none gDNA_id="C02HBa0320M09.4"/>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="6" PGL_strand="-" PGL_start="72299" PGL_stop="71526"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="72299" e_stop="71526"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.988"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.988">
            <gDNA_exon_boundary e_start="72299" e_stop="71526" e_length="774"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="72299" stop="71526"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E724466" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="72207" stop="71548"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E697589" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="6" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>AATCCAACCTATCTTCTAATTCCCTCTATATAAAATCTCCTTATAAAAAAGAGCACCCCCTTTATCTCTATACTGACAAAAAACCAAGAGAAATGGACAATAAGTTTCATTTTTTTCATTATCTCCATTTCTTCTTGCTTCTATCTTCATCTTGCTTTTCACTTGTTGCCTTCTCTTGGATTCCATATAATGAAAACAAGAACTATGAAGGCTCCTCTGATCTTGTTAATCTTGAATACCATATGGGACCTGTTCTTTCTTCTCCTATTAAACTTTATGTGATATGGTATGGCCATTGGAACCCTTCTCATCAAGCCACAATTAGAGACTTTCTTAACTCCTTTTCATCTTCTTATGCACCTCATCCTTCTGTAGCTGATTGGTGGCGAACCGTTCGTCTTTACACAGATCAAACTGGCCAAAACATCTCAACTATTTCACTTTCTGGTGAATTCTTTGACTATAAGTACTCACAAGGGAAGTACCTTAGCAGATTATCAATGCAATATGTGATCAAGAATGCAGTAAGATCATACCGTGAATCTATACCGTTAAATTATAAGAATGGAGTTTACTTAGTGTTAACATCTTATGATGTTCAAGTTCAAGAATTTTGTAGGGCTGTATGTGGTTTCCATTACTTTACATTTCCATCAATTCTTGGAGTGACAGTCCCTTATGCTTGGATTGGTTATAGTGGGAAACAATGTCCTGGTTTCTGTGCTTATCCTTTTGCTTGGCCTAAGAATTCAGGGAAGCCACCACCAAACACAA</gDNA_template>
            <first_frame> N  P  T  Y  L  L  I  P  S  I  *  N  L  L  I  K  K  S  T  P  F  I  S  I  L  T  K  N  Q  E  K  W  T  I  S  F  I  F  F  I  I  S  I  S  S  C  F  Y  L  H  L  A  F  H  L  L  P  S  L  G  F  H  I  M  K  T  R  T  M  K  A  P  L  I  L  L  I  L  N  T  I  W  D  L  F  F  L  L  L  L  N  F  M  *  Y  G  M  A  I  G  T  L  L  I  K  P  Q  L  E  T  F  L  T  P  F  H  L  L  M  H  L  I  L  L  *  L  I  G  G  E  P  F  V  F  T  Q  I  K  L  A  K  T  S  Q  L  F  H  F  L  V  N  S  L  T  I  S  T  H  K  G  S  T  L  A  D  Y  Q  C  N  M  *  S  R  M  Q  *  D  H  T  V  N  L  Y  R  *  I  I  R  M  E  F  T  *  C  *  H  L  M  M  F  K  F  K  N  F  V  G  L  Y  V  V  S  I  T  L  H  F  H  Q  F  L  E  *  Q  S  L  M  L  G  L  V  I  V  G  N  N  V  L  V  S  V  L  I  L  L  L  G  L  R  I  Q  G  S  H  H  Q  T  Q </first_frame>
            <second_frame>  I  Q  P  I  F  *  F  P  L  Y  K  I  S  L  *  K  R  A  P  P  L  S  L  Y  *  Q  K  T  K  R  N  G  Q  *  V  S  F  F  S  L  S  P  F  L  L  A  S  I  F  I  L  L  F  T  C  C  L  L  L  D  S  I  *  *  K  Q  E  L  *  R  L  L  *  S  C  *  S  *  I  P  Y  G  T  C  S  F  F  S  Y  *  T  L  C  D  M  V  W  P  L  E  P  F  S  S  S  H  N  *  R  L  S  *  L  L  F  I  F  L  C  T  S  S  F  C  S  *  L  V  A  N  R  S  S  L  H  R  S  N  W  P  K  H  L  N  Y  F  T  F  W  *  I  L  *  L  *  V  L  T  R  E  V  P  *  Q  I  I  N  A  I  C  D  Q  E  C  S  K  I  I  P  *  I  Y  T  V  K  L  *  E  W  S  L  L  S  V  N  I  L  *  C  S  S  S  R  I  L  *  G  C  M  W  F  P  L  L  Y  I  S  I  N  S  W  S  D  S  P  L  C  L  D  W  L  *  W  E  T  M  S  W  F  L  C  L  S  F  C  L  A  *  E  F  R  E  A  T  T  K  H   </second_frame>
            <third_frame>   S  N  L  S  S  N  S  L  Y  I  K  S  P  Y  K  K  E  H  P  L  Y  L  Y  T  D  K  K  P  R  E  M  D  N  K  F  H  F  F  H  Y  L  H  F  F  L  L  L  S  S  S  C  F  S  L  V  A  F  S  W  I  P  Y  N  E  N  K  N  Y  E  G  S  S  D  L  V  N  L  E  Y  H  M  G  P  V  L  S  S  P  I  K  L  Y  V  I  W  Y  G  H  W  N  P  S  H  Q  A  T  I  R  D  F  L  N  S  F  S  S  S  Y  A  P  H  P  S  V  A  D  W  W  R  T  V  R  L  Y  T  D  Q  T  G  Q  N  I  S  T  I  S  L  S  G  E  F  F  D  Y  K  Y  S  Q  G  K  Y  L  S  R  L  S  M  Q  Y  V  I  K  N  A  V  R  S  Y  R  E  S  I  P  L  N  Y  K  N  G  V  Y  L  V  L  T  S  Y  D  V  Q  V  Q  E  F  C  R  A  V  C  G  F  H  Y  F  T  F  P  S  I  L  G  V  T  V  P  Y  A  W  I  G  Y  S  G  K  Q  C  P  G  F  C  A  Y  P  F  A  W  P  K  N  S  G  K  P  P  P  N  T  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02HBa0320M09.4" strand="-"/>
                <serials PGL_serial="6" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="72297" stop="71527"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>771</number_coding_nucleotides>
                  <number_encoded_amino_acids>257</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>SNLSSNSLYIKSPYKKEHPLYLYTDKKPREMDNKFHFFHYLHFFLLLSSSCFSLVAFSWIPYNENKNYEGSSDLVNLEYHMGPVLSSPIKLYVIWYGHWNPSHQATIRDFLNSFSSSYAPHPSVADWWRTVRLYTDQTGQNISTISLSGEFFDYKYSQGKYLSRLSMQYVIKNAVRSYRESIPLNYKNGVYLVLTSYDVQVQEFCRAVCGFHYFTFPSILGVTVPYAWIGYSGKQCPGFCAYPFAWPKNSGKPPPNT</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="7" PGL_strand="+" PGL_start="83031" PGL_stop="84261"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="83031" e_stop="83073"/>
            <exon e_start="83853" e_stop="84261"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.762" acc_prob="0.883" e_score="1.000"/>
          <exon-only e_score="0.995"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="83031" e_stop="83073" e_length="43"/>
          </exon>
          <intron i_serial="1" don_prob="0.762" acc_prob="0.883">
            <gDNA_intron_boundary i_start="83074" i_stop="83852" i_length="779"/>
          </intron>
          <exon e_serial="2" e_score="0.995">
            <gDNA_exon_boundary e_start="83853" e_stop="84261" e_length="409"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="83031" stop="83073"/>
              <exon start="83853" stop="84261"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E274991" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="7" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>CCTTGTGATTTACTGAACAACAAACCAAAAGGCTATTTGGCAG : GACAGAGGGATATTAGTCTATATCAGCTCGACTTTGTGGAGATTTGGTGTTTGAGTCATTGACAGAATGATGTCAAGTAATTTGGGACTAACTGATTTAGAAAGGATGCCAAGTCATTTTGGTGGAGGGACTAAAAGAAGTCTGATTTTTGAGCAAGCTTGTGCTGTTCTGTGTTCACTCTAATTGAGCATGCTTTATGAAAAGAAATACAGGAGAAAACATTTTCACCTTTTTAATATGACATTGGGATTTAACCTTTCCTATCTTCACTTTTACTTTGGCATTTTAAACACTTTAGTTTTTTTATCTTCAGTACATGTAGCTCAGCCATTCTGATATTTGCAGATTGAGCATTAAAGCTGTCCCCTCACACTACTTCTTGATTTGGGTAATGCCAAAAGTAAGAAGC</gDNA_template>
            <first_frame> P  C  D  L  L  N  N  K  P  K  G  Y  L  A   : G  Q  R  D  I  S  L  Y  Q  L  D  F  V  E  I  W  C  L  S  H  *  Q  N  D  V  K  *  F  G  T  N  *  F  R  K  D  A  K  S  F  W  W  R  D  *  K  K  S  D  F  *  A  S  L  C  C  S  V  F  T  L  I  E  H  A  L  *  K  E  I  Q  E  K  T  F  S  P  F  *  Y  D  I  G  I  *  P  F  L  S  S  L  L  L  W  H  F  K  H  F  S  F  F  I  F  S  T  C  S  S  A  I  L  I  F  A  D  *  A  L  K  L  S  P  H  T  T  S  *  F  G  *  C  Q  K  *  E   </first_frame>
            <second_frame>  L  V  I  Y  *  T  T  N  Q  K  A  I  W  Q  :  D  R  G  I  L  V  Y  I  S  S  T  L  W  R  F  G  V  *  V  I  D  R  M  M  S  S  N  L  G  L  T  D  L  E  R  M  P  S  H  F  G  G  G  T  K  R  S  L  I  F  E  Q  A  C  A  V  L  C  S  L  *  L  S  M  L  Y  E  K  K  Y  R  R  K  H  F  H  L  F  N  M  T  L  G  F  N  L  S  Y  L  H  F  Y  F  G  I  L  N  T  L  V  F  L  S  S  V  H  V  A  Q  P  F  *  Y  L  Q  I  E  H  *  S  C  P  L  T  L  L  L  D  L  G  N  A  K  S  K  K  </second_frame>
            <third_frame>   L  *  F  T  E  Q  Q  T  K  R  L  F  G  R :   T  E  G  Y  *  S  I  S  A  R  L  C  G  D  L  V  F  E  S  L  T  E  *  C  Q  V  I  W  D  *  L  I  *  K  G  C  Q  V  I  L  V  E  G  L  K  E  V  *  F  L  S  K  L  V  L  F  C  V  H  S  N  *  A  C  F  M  K  R  N  T  G  E  N  I  F  T  F  L  I  *  H  W  D  L  T  F  P  I  F  T  F  T  L  A  F  *  T  L  *  F  F  Y  L  Q  Y  M  *  L  S  H  S  D  I  C  R  L  S  I  K  A  V  P  S  H  Y  F  L  I  W  V  M  P  K  V  R  S </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <none gDNA_id="C02HBa0320M09.4"/>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="8" PGL_strand="+" PGL_start="86864" PGL_stop="92476"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="86864" e_stop="86972"/>
            <exon e_start="87044" e_stop="87101"/>
            <exon e_start="88157" e_stop="88381"/>
            <exon e_start="88463" e_stop="88639"/>
            <exon e_start="88732" e_stop="88956"/>
            <exon e_start="89068" e_stop="89196"/>
            <exon e_start="91859" e_stop="92476"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.956" acc_prob="0.976" e_score="1.000"/>
          <exon-intron don_prob="0.996" acc_prob="0.816" e_score="1.000"/>
          <exon-intron don_prob="0.966" acc_prob="0.988" e_score="1.000"/>
          <exon-intron don_prob="0.896" acc_prob="1.000" e_score="1.000"/>
          <exon-intron don_prob="0.000" acc_prob="0.997" e_score="1.000"/>
          <exon-intron don_prob="0.999" acc_prob="0.991" e_score="1.000"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="86864" e_stop="86972" e_length="109"/>
          </exon>
          <intron i_serial="1" don_prob="0.956" acc_prob="0.976">
            <gDNA_intron_boundary i_start="86973" i_stop="87043" i_length="71"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="87044" e_stop="87101" e_length="58"/>
          </exon>
          <intron i_serial="2" don_prob="0.996" acc_prob="0.816">
            <gDNA_intron_boundary i_start="87102" i_stop="88156" i_length="1055"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="88157" e_stop="88381" e_length="225"/>
          </exon>
          <intron i_serial="3" don_prob="0.966" acc_prob="0.988">
            <gDNA_intron_boundary i_start="88382" i_stop="88462" i_length="81"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="88463" e_stop="88639" e_length="177"/>
          </exon>
          <intron i_serial="4" don_prob="0.896" acc_prob="1.000">
            <gDNA_intron_boundary i_start="88640" i_stop="88731" i_length="92"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="88732" e_stop="88956" e_length="225"/>
          </exon>
          <intron i_serial="5" don_prob="0.000" acc_prob="0.997">
            <gDNA_intron_boundary i_start="88957" i_stop="89067" i_length="111"/>
          </intron>
          <exon e_serial="6" e_score="1.000">
            <gDNA_exon_boundary e_start="89068" e_stop="89196" e_length="129"/>
          </exon>
          <intron i_serial="6" don_prob="0.999" acc_prob="0.991">
            <gDNA_intron_boundary i_start="89197" i_stop="91858" i_length="2662"/>
          </intron>
          <exon e_serial="7" e_score="1.000">
            <gDNA_exon_boundary e_start="91859" e_stop="92476" e_length="618"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="86864" stop="86972"/>
              <exon start="87044" stop="87101"/>
              <exon start="88157" stop="88381"/>
              <exon start="88463" stop="88583"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E245215" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="86899" stop="86972"/>
              <exon start="87044" stop="87101"/>
              <exon start="88157" stop="88381"/>
              <exon start="88463" stop="88639"/>
              <exon start="88732" stop="88793"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E245251" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="86899" stop="86972"/>
              <exon start="87044" stop="87101"/>
              <exon start="88157" stop="88381"/>
              <exon start="88463" stop="88633"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E245250" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="86907" stop="86972"/>
              <exon start="87044" stop="87101"/>
              <exon start="88157" stop="88381"/>
              <exon start="88463" stop="88594"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E248686" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="86930" stop="86972"/>
              <exon start="87044" stop="87101"/>
              <exon start="88157" stop="88381"/>
              <exon start="88463" stop="88639"/>
              <exon start="88732" stop="88835"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E252405" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="86937" stop="86972"/>
              <exon start="87044" stop="87101"/>
              <exon start="88157" stop="88381"/>
              <exon start="88463" stop="88598"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E275251" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="86938" stop="86972"/>
              <exon start="87044" stop="87101"/>
              <exon start="88157" stop="88381"/>
              <exon start="88463" stop="88639"/>
              <exon start="88732" stop="88956"/>
              <exon start="89068" stop="89078"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E723398" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="87058" stop="87101"/>
              <exon start="88157" stop="88381"/>
              <exon start="88463" stop="88639"/>
              <exon start="88732" stop="88953"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E318197" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="87058" stop="87101"/>
              <exon start="88157" stop="88381"/>
              <exon start="88463" stop="88639"/>
              <exon start="88732" stop="88822"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E312637" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="87058" stop="87101"/>
              <exon start="88157" stop="88381"/>
              <exon start="88463" stop="88525"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E310035" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="87061" stop="87101"/>
              <exon start="88157" stop="88381"/>
              <exon start="88463" stop="88639"/>
              <exon start="88732" stop="88956"/>
              <exon start="89068" stop="89154"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E549253" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="87062" stop="87101"/>
              <exon start="88157" stop="88381"/>
              <exon start="88463" stop="88639"/>
              <exon start="88732" stop="88829"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E312434" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="87064" stop="87101"/>
              <exon start="88157" stop="88381"/>
              <exon start="88463" stop="88639"/>
              <exon start="88732" stop="88822"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E214292" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="87072" stop="87101"/>
              <exon start="88157" stop="88381"/>
              <exon start="88463" stop="88639"/>
              <exon start="88732" stop="88885"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E311633" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="87072" stop="87101"/>
              <exon start="88157" stop="88381"/>
              <exon start="88463" stop="88639"/>
              <exon start="88732" stop="88840"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E311726" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="87074" stop="87101"/>
              <exon start="88157" stop="88381"/>
              <exon start="88463" stop="88639"/>
              <exon start="88732" stop="88898"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E313250" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="87074" stop="87101"/>
              <exon start="88157" stop="88381"/>
              <exon start="88463" stop="88639"/>
              <exon start="88732" stop="88830"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E301798" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="88259" stop="88381"/>
              <exon start="88463" stop="88639"/>
              <exon start="88732" stop="88956"/>
              <exon start="89068" stop="89196"/>
              <exon start="91859" stop="92034"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E709209" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="88261" stop="88381"/>
              <exon start="88463" stop="88639"/>
              <exon start="88732" stop="88956"/>
              <exon start="89068" stop="89196"/>
              <exon start="91859" stop="92025"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E709253" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="88264" stop="88381"/>
              <exon start="88463" stop="88639"/>
              <exon start="88732" stop="88956"/>
              <exon start="89068" stop="89161"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E276287" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="88327" stop="88381"/>
              <exon start="88463" stop="88639"/>
              <exon start="88732" stop="88956"/>
              <exon start="89068" stop="89196"/>
              <exon start="91859" stop="91921"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E238325" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="88551" stop="88639"/>
              <exon start="88732" stop="88956"/>
              <exon start="89068" stop="89186"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E238543" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="88551" stop="88639"/>
              <exon start="88732" stop="88956"/>
              <exon start="89068" stop="89152"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E237512" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="88598" stop="88639"/>
              <exon start="88732" stop="88956"/>
              <exon start="89068" stop="89196"/>
              <exon start="91859" stop="91905"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E308742" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="88638" stop="88639"/>
              <exon start="88732" stop="88956"/>
              <exon start="89068" stop="89196"/>
              <exon start="91859" stop="91894"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E233748" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="88867" stop="88956"/>
              <exon start="89068" stop="89196"/>
              <exon start="91859" stop="92330"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E349094" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="88926" stop="88956"/>
              <exon start="89068" stop="89196"/>
              <exon start="91859" stop="92389"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E350279" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="88932" stop="88956"/>
              <exon start="89068" stop="89196"/>
              <exon start="91859" stop="92469"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E540614" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="89068" stop="89196"/>
              <exon start="91859" stop="92476"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E545718" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="91889" stop="92405"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E350484" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="91979" stop="92469"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E245284" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="92026" stop="92417"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E218029" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="8" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>ATTTTCCCACTTACTCTCTATGAATGTATAGGGACAAGATCATGACTAAAGGTGCCAGTTTTCAAGATTCATAGTATCAACAATAATTAGCAATAAAATAGACTAACAG : AACAATCCAACTACAAACACTGAGGCACACTTTTGTATTTCAACAGCCTTCTTTCAAG : CAAAGTATACGAATGGCTCGTTCCGCTCTGGATGAGATGTCAGCAACAGGTGCTTTTGAGAGAACTGCTTCAACCTTCCGTAATATAGTCTCAAGGGAACCCGGCTCAGTTTTTCCAGTCGAATCTGGGAGGTACCACCTCTACATATCATATGCTTGCCCATGGGCATCAAGGTGCCTGGCTTACTTGAAGATTAAAGGCCTTGATCAAGCCATTGATTTCACA : TCTGTTAAACCTGTTTGGGAGAGGACGAAGGACAGCGATGAGCACACGGGATGGGTTTTTGCTTCATCAAGCACCGAGGAAGCAGGAGCTGATCTTGATCCTCTTAATGGAGCCAAAAGCATACGGGAGCTGTATGAGCTTGCAAGTACAAACTATTCTGGGAAATACACTGTTCCG : GTTCTTTGGGATAAGAAACTGAAGACAATCGTGAACAACGAGAGTGCAGAAATAATACGCATGTTTAATAGTGAATTTAATGATATAGCTGAGAATGCAGCTTTGGACCTTTATCCTCCTCATTTGCAATCCCTAATCAATGAAGCAAATGAATGGATATATGATGGAATAAACAACGGAGTGTATCAATGTGGTTTTGCAAAGAAGCAAGAGCCTTATGATGAG : GCTGTGCAAAAAGTATACAAAGCTTTGGACAAATGTGAGGAGATACTGAGCAAGCAGAGATACATATGTGGAGATCAAGTGACTGAAGCAGATATTCGCTTGTTTGTCACCCTGATTAGGTTTGATGAG : GTGTATGCTGTCTACTTCAAGTGCAATAAGAAGCTACTTCGTGAATATCCAAATCTGTTTAATTACACCAAAGATATTTTCCAAATACCCGGCATGAGCAGTACGGTCAACATGGAACACATCAAAAAGCATTACTATAGGAGCCATCCTAGCATCAATCCTTTCGGAATCATTCCCCAGGGTCCAAATATCGACTATTCCTCTCCACATGATCGAGAGAAGTTCTCTAAGTAGGATTGGTACATAATCTGAGCATGCATTTCAAACTCCGGTCATCCTTTTCACTCCTTAAGGTTCAAGGAGTATGTGGAGTTGCTACAAGTACTGATGCTGCCTCAATCTTCGGCTTTTTATAGCGTAAATTATCTTATAAGAGATGTAAGTTGTGCTAGTTTTTTTTTTTGTAAAGTAAGGAGTTGAAACAAGAGCTTCTGCTATATTTACCGTTTGTTCATCCTAAAAGTGTTTCTGTAGAGTTGCTACAACTTGTAGTTTCTCATGAATCTCAGTTTTATGCAGTGTTGAATTATCTCCTAAATAAGAGATGTAAGTTGTGCTAGTTTTTTTGTAAAAGCAAGGAGGTAATGAATGCGTTACGTGTTTGCTGCTACGTTTACA</gDNA_template>
            <first_frame> I  F  P  L  T  L  Y  E  C  I  G  T  R  S  *  L  K  V  P  V  F  K  I  H  S  I  N  N  N  *  Q  *  N  R  L  T   : E  Q  S  N  Y  K  H  *  G  T  L  L  Y  F  N  S  L  L  S  S :   K  V  Y  E  W  L  V  P  L  W  M  R  C  Q  Q  Q  V  L  L  R  E  L  L  Q  P  S  V  I  *  S  Q  G  N  P  A  Q  F  F  Q  S  N  L  G  G  T  T  S  T  Y  H  M  L  A  H  G  H  Q  G  A  W  L  T  *  R  L  K  A  L  I  K  P  L  I  S  H :   L  L  N  L  F  G  R  G  R  R  T  A  M  S  T  R  D  G  F  L  L  H  Q  A  P  R  K  Q  E  L  I  L  I  L  L  M  E  P  K  A  Y  G  S  C  M  S  L  Q  V  Q  T  I  L  G  N  T  L  F  R :   F  F  G  I  R  N  *  R  Q  S  *  T  T  R  V  Q  K  *  Y  A  C  L  I  V  N  L  M  I  *  L  R  M  Q  L  W  T  F  I  L  L  I  C  N  P  *  S  M  K  Q  M  N  G  Y  M  M  E  *  T  T  E  C  I  N  V  V  L  Q  R  S  K  S  L  M  M  R :   L  C  K  K  Y  T  K  L  W  T  N  V  R  R  Y  *  A  S  R  D  T  Y  V  E  I  K  *  L  K  Q  I  F  A  C  L  S  P  *  L  G  L  M  R :   C  M  L  S  T  S  S  A  I  R  S  Y  F  V  N  I  Q  I  C  L  I  T  P  K  I  F  S  K  Y  P  A  *  A  V  R  S  T  W  N  T  S  K  S  I  T  I  G  A  I  L  A  S  I  L  S  E  S  F  P  R  V  Q  I  S  T  I  P  L  H  M  I  E  R  S  S  L  S  R  I  G  T  *  S  E  H  A  F  Q  T  P  V  I  L  F  T  P  *  G  S  R  S  M  W  S  C  Y  K  Y  *  C  C  L  N  L  R  L  F  I  A  *  I  I  L  *  E  M  *  V  V  L  V  F  F  F  V  K  *  G  V  E  T  R  A  S  A  I  F  T  V  C  S  S  *  K  C  F  C  R  V  A  T  T  C  S  F  S  *  I  S  V  L  C  S  V  E  L  S  P  K  *  E  M  *  V  V  L  V  F  L  *  K  Q  G  G  N  E  C  V  T  C  L  L  L  R  L   </first_frame>
            <second_frame>  F  S  H  L  L  S  M  N  V  *  G  Q  D  H  D  *  R  C  Q  F  S  R  F  I  V  S  T  I  I  S  N  K  I  D  *  Q  :  N  N  P  T  T  N  T  E  A  H  F  C  I  S  T  A  F  F  Q   : A  K  Y  T  N  G  S  F  R  S  G  *  D  V  S  N  R  C  F  *  E  N  C  F  N  L  P  *  Y  S  L  K  G  T  R  L  S  F  S  S  R  I  W  E  V  P  P  L  H  I  I  C  L  P  M  G  I  K  V  P  G  L  L  E  D  *  R  P  *  S  S  H  *  F  H   : I  C  *  T  C  L  G  E  D  E  G  Q  R  *  A  H  G  M  G  F  C  F  I  K  H  R  G  S  R  S  *  S  *  S  S  *  W  S  Q  K  H  T  G  A  V  *  A  C  K  Y  K  L  F  W  E  I  H  C  S   : G  S  L  G  *  E  T  E  D  N  R  E  Q  R  E  C  R  N  N  T  H  V  *  *  *  I  *  *  Y  S  *  E  C  S  F  G  P  L  S  S  S  F  A  I  P  N  Q  *  S  K  *  M  D  I  *  W  N  K  Q  R  S  V  S  M  W  F  C  K  E  A  R  A  L  *  *   : G  C  A  K  S  I  Q  S  F  G  Q  M  *  G  D  T  E  Q  A  E  I  H  M  W  R  S  S  D  *  S  R  Y  S  L  V  C  H  P  D  *  V  *  *   : G  V  C  C  L  L  Q  V  Q  *  E  A  T  S  *  I  S  K  S  V  *  L  H  Q  R  Y  F  P  N  T  R  H  E  Q  Y  G  Q  H  G  T  H  Q  K  A  L  L  *  E  P  S  *  H  Q  S  F  R  N  H  S  P  G  S  K  Y  R  L  F  L  S  T  *  S  R  E  V  L  *  V  G  L  V  H  N  L  S  M  H  F  K  L  R  S  S  F  S  L  L  K  V  Q  G  V  C  G  V  A  T  S  T  D  A  A  S  I  F  G  F  L  *  R  K  L  S  Y  K  R  C  K  L  C  *  F  F  F  L  *  S  K  E  L  K  Q  E  L  L  L  Y  L  P  F  V  H  P  K  S  V  S  V  E  L  L  Q  L  V  V  S  H  E  S  Q  F  Y  A  V  L  N  Y  L  L  N  K  R  C  K  L  C  *  F  F  C  K  S  K  E  V  M  N  A  L  R  V  C  C  Y  V  Y  </second_frame>
            <third_frame>   F  P  T  Y  S  L  *  M  Y  R  D  K  I  M  T  K  G  A  S  F  Q  D  S  *  Y  Q  Q  *  L  A  I  K  *  T  N  R :   T  I  Q  L  Q  T  L  R  H  T  F  V  F  Q  Q  P  S  F  K  :  Q  S  I  R  M  A  R  S  A  L  D  E  M  S  A  T  G  A  F  E  R  T  A  S  T  F  R  N  I  V  S  R  E  P  G  S  V  F  P  V  E  S  G  R  Y  H  L  Y  I  S  Y  A  C  P  W  A  S  R  C  L  A  Y  L  K  I  K  G  L  D  Q  A  I  D  F  T  :  S  V  K  P  V  W  E  R  T  K  D  S  D  E  H  T  G  W  V  F  A  S  S  S  T  E  E  A  G  A  D  L  D  P  L  N  G  A  K  S  I  R  E  L  Y  E  L  A  S  T  N  Y  S  G  K  Y  T  V  P  :  V  L  W  D  K  K  L  K  T  I  V  N  N  E  S  A  E  I  I  R  M  F  N  S  E  F  N  D  I  A  E  N  A  A  L  D  L  Y  P  P  H  L  Q  S  L  I  N  E  A  N  E  W  I  Y  D  G  I  N  N  G  V  Y  Q  C  G  F  A  K  K  Q  E  P  Y  D  E  :  A  V  Q  K  V  Y  K  A  L  D  K  C  E  E  I  L  S  K  Q  R  Y  I  C  G  D  Q  V  T  E  A  D  I  R  L  F  V  T  L  I  R  F  D  E  :  V  Y  A  V  Y  F  K  C  N  K  K  L  L  R  E  Y  P  N  L  F  N  Y  T  K  D  I  F  Q  I  P  G  M  S  S  T  V  N  M  E  H  I  K  K  H  Y  Y  R  S  H  P  S  I  N  P  F  G  I  I  P  Q  G  P  N  I  D  Y  S  S  P  H  D  R  E  K  F  S  K  *  D  W  Y  I  I  *  A  C  I  S  N  S  G  H  P  F  H  S  L  R  F  K  E  Y  V  E  L  L  Q  V  L  M  L  P  Q  S  S  A  F  Y  S  V  N  Y  L  I  R  D  V  S  C  A  S  F  F  F  C  K  V  R  S  *  N  K  S  F  C  Y  I  Y  R  L  F  I  L  K  V  F  L  *  S  C  Y  N  L  *  F  L  M  N  L  S  F  M  Q  C  *  I  I  S  *  I  R  D  V  S  C  A  S  F  F  V  K  A  R  R  *  *  M  R  Y  V  F  A  A  T  F  T </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02HBa0320M09.4" strand="+"/>
                <serials PGL_serial="8" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="86965" stop="86972"/>
                    <exon start="87044" stop="87101"/>
                    <exon start="88157" stop="88381"/>
                    <exon start="88463" stop="88639"/>
                    <exon start="88732" stop="88956"/>
                    <exon start="89068" stop="89196"/>
                    <exon start="91859" stop="92092"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>1053</number_coding_nucleotides>
                  <number_encoded_amino_acids>351</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>TNRTIQLQTLRHTFVFQQPSFKQSIRMARSALDEMSATGAFERTASTFRNIVSREPGSVFPVESGRYHLYISYACPWASRCLAYLKIKGLDQAIDFTSVKPVWERTKDSDEHTGWVFASSSTEEAGADLDPLNGAKSIRELYELASTNYSGKYTVPVLWDKKLKTIVNNESAEIIRMFNSEFNDIAENAALDLYPPHLQSLINEANEWIYDGINNGVYQCGFAKKQEPYDEAVQKVYKALDKCEEILSKQRYICGDQVTEADIRLFVTLIRFDEVYAVYFKCNKKLLREYPNLFNYTKDIFQIPGMSSTVNMEHIKKHYYRSHPSINPFGIIPQGPNIDYSSPHDREKFSK*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="2">
          <exon_coordinates>
            <exon e_start="86864" e_stop="86972"/>
            <exon e_start="87023" e_stop="87101"/>
            <exon e_start="88157" e_stop="88381"/>
            <exon e_start="88463" e_stop="88639"/>
            <exon e_start="88732" e_stop="88956"/>
            <exon e_start="89068" e_stop="89196"/>
            <exon e_start="91859" e_stop="92476"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.956" acc_prob="0.000" e_score="1.000"/>
          <exon-intron don_prob="0.996" acc_prob="0.816" e_score="0.924"/>
          <exon-intron don_prob="0.966" acc_prob="0.988" e_score="1.000"/>
          <exon-intron don_prob="0.896" acc_prob="1.000" e_score="1.000"/>
          <exon-intron don_prob="0.000" acc_prob="0.997" e_score="1.000"/>
          <exon-intron don_prob="0.999" acc_prob="0.991" e_score="1.000"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="86864" e_stop="86972" e_length="109"/>
          </exon>
          <intron i_serial="1" don_prob="0.956" acc_prob="0.000">
            <gDNA_intron_boundary i_start="86973" i_stop="87022" i_length="50"/>
          </intron>
          <exon e_serial="2" e_score="0.924">
            <gDNA_exon_boundary e_start="87023" e_stop="87101" e_length="79"/>
          </exon>
          <intron i_serial="2" don_prob="0.996" acc_prob="0.816">
            <gDNA_intron_boundary i_start="87102" i_stop="88156" i_length="1055"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="88157" e_stop="88381" e_length="225"/>
          </exon>
          <intron i_serial="3" don_prob="0.966" acc_prob="0.988">
            <gDNA_intron_boundary i_start="88382" i_stop="88462" i_length="81"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="88463" e_stop="88639" e_length="177"/>
          </exon>
          <intron i_serial="4" don_prob="0.896" acc_prob="1.000">
            <gDNA_intron_boundary i_start="88640" i_stop="88731" i_length="92"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="88732" e_stop="88956" e_length="225"/>
          </exon>
          <intron i_serial="5" don_prob="0.000" acc_prob="0.997">
            <gDNA_intron_boundary i_start="88957" i_stop="89067" i_length="111"/>
          </intron>
          <exon e_serial="6" e_score="1.000">
            <gDNA_exon_boundary e_start="89068" e_stop="89196" e_length="129"/>
          </exon>
          <intron i_serial="6" don_prob="0.999" acc_prob="0.991">
            <gDNA_intron_boundary i_start="89197" i_stop="91858" i_length="2662"/>
          </intron>
          <exon e_serial="7" e_score="1.000">
            <gDNA_exon_boundary e_start="91859" e_stop="92476" e_length="618"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="86864" stop="86972"/>
              <exon start="87023" stop="87101"/>
              <exon start="88157" stop="88381"/>
              <exon start="88463" stop="88639"/>
              <exon start="88732" stop="88952"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E540616" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="86865" stop="86972"/>
              <exon start="87023" stop="87101"/>
              <exon start="88157" stop="88381"/>
              <exon start="88463" stop="88508"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E289657" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="87058" stop="87101"/>
              <exon start="88157" stop="88381"/>
              <exon start="88463" stop="88639"/>
              <exon start="88732" stop="88953"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E318197" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="87058" stop="87101"/>
              <exon start="88157" stop="88381"/>
              <exon start="88463" stop="88639"/>
              <exon start="88732" stop="88822"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E312637" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="87058" stop="87101"/>
              <exon start="88157" stop="88381"/>
              <exon start="88463" stop="88525"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E310035" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="87061" stop="87101"/>
              <exon start="88157" stop="88381"/>
              <exon start="88463" stop="88639"/>
              <exon start="88732" stop="88956"/>
              <exon start="89068" stop="89154"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E549253" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="87062" stop="87101"/>
              <exon start="88157" stop="88381"/>
              <exon start="88463" stop="88639"/>
              <exon start="88732" stop="88829"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E312434" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="87064" stop="87101"/>
              <exon start="88157" stop="88381"/>
              <exon start="88463" stop="88639"/>
              <exon start="88732" stop="88822"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E214292" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="87072" stop="87101"/>
              <exon start="88157" stop="88381"/>
              <exon start="88463" stop="88639"/>
              <exon start="88732" stop="88885"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E311633" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="87072" stop="87101"/>
              <exon start="88157" stop="88381"/>
              <exon start="88463" stop="88639"/>
              <exon start="88732" stop="88840"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E311726" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="87074" stop="87101"/>
              <exon start="88157" stop="88381"/>
              <exon start="88463" stop="88639"/>
              <exon start="88732" stop="88898"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E313250" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="87074" stop="87101"/>
              <exon start="88157" stop="88381"/>
              <exon start="88463" stop="88639"/>
              <exon start="88732" stop="88830"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E301798" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="88259" stop="88381"/>
              <exon start="88463" stop="88639"/>
              <exon start="88732" stop="88956"/>
              <exon start="89068" stop="89196"/>
              <exon start="91859" stop="92034"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E709209" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="88261" stop="88381"/>
              <exon start="88463" stop="88639"/>
              <exon start="88732" stop="88956"/>
              <exon start="89068" stop="89196"/>
              <exon start="91859" stop="92025"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E709253" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="88264" stop="88381"/>
              <exon start="88463" stop="88639"/>
              <exon start="88732" stop="88956"/>
              <exon start="89068" stop="89161"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E276287" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="88327" stop="88381"/>
              <exon start="88463" stop="88639"/>
              <exon start="88732" stop="88956"/>
              <exon start="89068" stop="89196"/>
              <exon start="91859" stop="91921"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E238325" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="88551" stop="88639"/>
              <exon start="88732" stop="88956"/>
              <exon start="89068" stop="89186"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E238543" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="88551" stop="88639"/>
              <exon start="88732" stop="88956"/>
              <exon start="89068" stop="89152"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E237512" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="88598" stop="88639"/>
              <exon start="88732" stop="88956"/>
              <exon start="89068" stop="89196"/>
              <exon start="91859" stop="91905"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E308742" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="88638" stop="88639"/>
              <exon start="88732" stop="88956"/>
              <exon start="89068" stop="89196"/>
              <exon start="91859" stop="91894"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E233748" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="88867" stop="88956"/>
              <exon start="89068" stop="89196"/>
              <exon start="91859" stop="92330"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E349094" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="88926" stop="88956"/>
              <exon start="89068" stop="89196"/>
              <exon start="91859" stop="92389"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E350279" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="88932" stop="88956"/>
              <exon start="89068" stop="89196"/>
              <exon start="91859" stop="92469"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E540614" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="89068" stop="89196"/>
              <exon start="91859" stop="92476"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E545718" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="91889" stop="92405"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E350484" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="91979" stop="92469"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E245284" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="92026" stop="92417"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E218029" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="8" AGS_serial="2" gDNA_strand="+"/>
          <translation>
            <gDNA_template>ATTTTCCCACTTACTCTCTATGAATGTATAGGGACAAGATCATGACTAAAGGTGCCAGTTTTCAAGATTCATAGTATCAACAATAATTAGCAATAAAATAGACTAACAG : GAATTTTCCTTTTGTAAACAGAACAATCCAACTACAAACACTGAGGCACACTTTTGTATTTCAACAGCCTTCTTTCAAG : CAAAGTATACGAATGGCTCGTTCCGCTCTGGATGAGATGTCAGCAACAGGTGCTTTTGAGAGAACTGCTTCAACCTTCCGTAATATAGTCTCAAGGGAACCCGGCTCAGTTTTTCCAGTCGAATCTGGGAGGTACCACCTCTACATATCATATGCTTGCCCATGGGCATCAAGGTGCCTGGCTTACTTGAAGATTAAAGGCCTTGATCAAGCCATTGATTTCACA : TCTGTTAAACCTGTTTGGGAGAGGACGAAGGACAGCGATGAGCACACGGGATGGGTTTTTGCTTCATCAAGCACCGAGGAAGCAGGAGCTGATCTTGATCCTCTTAATGGAGCCAAAAGCATACGGGAGCTGTATGAGCTTGCAAGTACAAACTATTCTGGGAAATACACTGTTCCG : GTTCTTTGGGATAAGAAACTGAAGACAATCGTGAACAACGAGAGTGCAGAAATAATACGCATGTTTAATAGTGAATTTAATGATATAGCTGAGAATGCAGCTTTGGACCTTTATCCTCCTCATTTGCAATCCCTAATCAATGAAGCAAATGAATGGATATATGATGGAATAAACAACGGAGTGTATCAATGTGGTTTTGCAAAGAAGCAAGAGCCTTATGATGAG : GCTGTGCAAAAAGTATACAAAGCTTTGGACAAATGTGAGGAGATACTGAGCAAGCAGAGATACATATGTGGAGATCAAGTGACTGAAGCAGATATTCGCTTGTTTGTCACCCTGATTAGGTTTGATGAG : GTGTATGCTGTCTACTTCAAGTGCAATAAGAAGCTACTTCGTGAATATCCAAATCTGTTTAATTACACCAAAGATATTTTCCAAATACCCGGCATGAGCAGTACGGTCAACATGGAACACATCAAAAAGCATTACTATAGGAGCCATCCTAGCATCAATCCTTTCGGAATCATTCCCCAGGGTCCAAATATCGACTATTCCTCTCCACATGATCGAGAGAAGTTCTCTAAGTAGGATTGGTACATAATCTGAGCATGCATTTCAAACTCCGGTCATCCTTTTCACTCCTTAAGGTTCAAGGAGTATGTGGAGTTGCTACAAGTACTGATGCTGCCTCAATCTTCGGCTTTTTATAGCGTAAATTATCTTATAAGAGATGTAAGTTGTGCTAGTTTTTTTTTTTGTAAAGTAAGGAGTTGAAACAAGAGCTTCTGCTATATTTACCGTTTGTTCATCCTAAAAGTGTTTCTGTAGAGTTGCTACAACTTGTAGTTTCTCATGAATCTCAGTTTTATGCAGTGTTGAATTATCTCCTAAATAAGAGATGTAAGTTGTGCTAGTTTTTTTGTAAAAGCAAGGAGGTAATGAATGCGTTACGTGTTTGCTGCTACGTTTACA</gDNA_template>
            <first_frame> I  F  P  L  T  L  Y  E  C  I  G  T  R  S  *  L  K  V  P  V  F  K  I  H  S  I  N  N  N  *  Q  *  N  R  L  T   : G  I  F  L  L  *  T  E  Q  S  N  Y  K  H  *  G  T  L  L  Y  F  N  S  L  L  S  S :   K  V  Y  E  W  L  V  P  L  W  M  R  C  Q  Q  Q  V  L  L  R  E  L  L  Q  P  S  V  I  *  S  Q  G  N  P  A  Q  F  F  Q  S  N  L  G  G  T  T  S  T  Y  H  M  L  A  H  G  H  Q  G  A  W  L  T  *  R  L  K  A  L  I  K  P  L  I  S  H :   L  L  N  L  F  G  R  G  R  R  T  A  M  S  T  R  D  G  F  L  L  H  Q  A  P  R  K  Q  E  L  I  L  I  L  L  M  E  P  K  A  Y  G  S  C  M  S  L  Q  V  Q  T  I  L  G  N  T  L  F  R :   F  F  G  I  R  N  *  R  Q  S  *  T  T  R  V  Q  K  *  Y  A  C  L  I  V  N  L  M  I  *  L  R  M  Q  L  W  T  F  I  L  L  I  C  N  P  *  S  M  K  Q  M  N  G  Y  M  M  E  *  T  T  E  C  I  N  V  V  L  Q  R  S  K  S  L  M  M  R :   L  C  K  K  Y  T  K  L  W  T  N  V  R  R  Y  *  A  S  R  D  T  Y  V  E  I  K  *  L  K  Q  I  F  A  C  L  S  P  *  L  G  L  M  R :   C  M  L  S  T  S  S  A  I  R  S  Y  F  V  N  I  Q  I  C  L  I  T  P  K  I  F  S  K  Y  P  A  *  A  V  R  S  T  W  N  T  S  K  S  I  T  I  G  A  I  L  A  S  I  L  S  E  S  F  P  R  V  Q  I  S  T  I  P  L  H  M  I  E  R  S  S  L  S  R  I  G  T  *  S  E  H  A  F  Q  T  P  V  I  L  F  T  P  *  G  S  R  S  M  W  S  C  Y  K  Y  *  C  C  L  N  L  R  L  F  I  A  *  I  I  L  *  E  M  *  V  V  L  V  F  F  F  V  K  *  G  V  E  T  R  A  S  A  I  F  T  V  C  S  S  *  K  C  F  C  R  V  A  T  T  C  S  F  S  *  I  S  V  L  C  S  V  E  L  S  P  K  *  E  M  *  V  V  L  V  F  L  *  K  Q  G  G  N  E  C  V  T  C  L  L  L  R  L   </first_frame>
            <second_frame>  F  S  H  L  L  S  M  N  V  *  G  Q  D  H  D  *  R  C  Q  F  S  R  F  I  V  S  T  I  I  S  N  K  I  D  *  Q  :  E  F  S  F  C  K  Q  N  N  P  T  T  N  T  E  A  H  F  C  I  S  T  A  F  F  Q   : A  K  Y  T  N  G  S  F  R  S  G  *  D  V  S  N  R  C  F  *  E  N  C  F  N  L  P  *  Y  S  L  K  G  T  R  L  S  F  S  S  R  I  W  E  V  P  P  L  H  I  I  C  L  P  M  G  I  K  V  P  G  L  L  E  D  *  R  P  *  S  S  H  *  F  H   : I  C  *  T  C  L  G  E  D  E  G  Q  R  *  A  H  G  M  G  F  C  F  I  K  H  R  G  S  R  S  *  S  *  S  S  *  W  S  Q  K  H  T  G  A  V  *  A  C  K  Y  K  L  F  W  E  I  H  C  S   : G  S  L  G  *  E  T  E  D  N  R  E  Q  R  E  C  R  N  N  T  H  V  *  *  *  I  *  *  Y  S  *  E  C  S  F  G  P  L  S  S  S  F  A  I  P  N  Q  *  S  K  *  M  D  I  *  W  N  K  Q  R  S  V  S  M  W  F  C  K  E  A  R  A  L  *  *   : G  C  A  K  S  I  Q  S  F  G  Q  M  *  G  D  T  E  Q  A  E  I  H  M  W  R  S  S  D  *  S  R  Y  S  L  V  C  H  P  D  *  V  *  *   : G  V  C  C  L  L  Q  V  Q  *  E  A  T  S  *  I  S  K  S  V  *  L  H  Q  R  Y  F  P  N  T  R  H  E  Q  Y  G  Q  H  G  T  H  Q  K  A  L  L  *  E  P  S  *  H  Q  S  F  R  N  H  S  P  G  S  K  Y  R  L  F  L  S  T  *  S  R  E  V  L  *  V  G  L  V  H  N  L  S  M  H  F  K  L  R  S  S  F  S  L  L  K  V  Q  G  V  C  G  V  A  T  S  T  D  A  A  S  I  F  G  F  L  *  R  K  L  S  Y  K  R  C  K  L  C  *  F  F  F  L  *  S  K  E  L  K  Q  E  L  L  L  Y  L  P  F  V  H  P  K  S  V  S  V  E  L  L  Q  L  V  V  S  H  E  S  Q  F  Y  A  V  L  N  Y  L  L  N  K  R  C  K  L  C  *  F  F  C  K  S  K  E  V  M  N  A  L  R  V  C  C  Y  V  Y  </second_frame>
            <third_frame>   F  P  T  Y  S  L  *  M  Y  R  D  K  I  M  T  K  G  A  S  F  Q  D  S  *  Y  Q  Q  *  L  A  I  K  *  T  N  R :   N  F  P  F  V  N  R  T  I  Q  L  Q  T  L  R  H  T  F  V  F  Q  Q  P  S  F  K  :  Q  S  I  R  M  A  R  S  A  L  D  E  M  S  A  T  G  A  F  E  R  T  A  S  T  F  R  N  I  V  S  R  E  P  G  S  V  F  P  V  E  S  G  R  Y  H  L  Y  I  S  Y  A  C  P  W  A  S  R  C  L  A  Y  L  K  I  K  G  L  D  Q  A  I  D  F  T  :  S  V  K  P  V  W  E  R  T  K  D  S  D  E  H  T  G  W  V  F  A  S  S  S  T  E  E  A  G  A  D  L  D  P  L  N  G  A  K  S  I  R  E  L  Y  E  L  A  S  T  N  Y  S  G  K  Y  T  V  P  :  V  L  W  D  K  K  L  K  T  I  V  N  N  E  S  A  E  I  I  R  M  F  N  S  E  F  N  D  I  A  E  N  A  A  L  D  L  Y  P  P  H  L  Q  S  L  I  N  E  A  N  E  W  I  Y  D  G  I  N  N  G  V  Y  Q  C  G  F  A  K  K  Q  E  P  Y  D  E  :  A  V  Q  K  V  Y  K  A  L  D  K  C  E  E  I  L  S  K  Q  R  Y  I  C  G  D  Q  V  T  E  A  D  I  R  L  F  V  T  L  I  R  F  D  E  :  V  Y  A  V  Y  F  K  C  N  K  K  L  L  R  E  Y  P  N  L  F  N  Y  T  K  D  I  F  Q  I  P  G  M  S  S  T  V  N  M  E  H  I  K  K  H  Y  Y  R  S  H  P  S  I  N  P  F  G  I  I  P  Q  G  P  N  I  D  Y  S  S  P  H  D  R  E  K  F  S  K  *  D  W  Y  I  I  *  A  C  I  S  N  S  G  H  P  F  H  S  L  R  F  K  E  Y  V  E  L  L  Q  V  L  M  L  P  Q  S  S  A  F  Y  S  V  N  Y  L  I  R  D  V  S  C  A  S  F  F  F  C  K  V  R  S  *  N  K  S  F  C  Y  I  Y  R  L  F  I  L  K  V  F  L  *  S  C  Y  N  L  *  F  L  M  N  L  S  F  M  Q  C  *  I  I  S  *  I  R  D  V  S  C  A  S  F  F  V  K  A  R  R  *  *  M  R  Y  V  F  A  A  T  F  T </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02HBa0320M09.4" strand="+"/>
                <serials PGL_serial="8" AGS_serial="2" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="86965" stop="86972"/>
                    <exon start="87023" stop="87101"/>
                    <exon start="88157" stop="88381"/>
                    <exon start="88463" stop="88639"/>
                    <exon start="88732" stop="88956"/>
                    <exon start="89068" stop="89196"/>
                    <exon start="91859" stop="92092"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>1074</number_coding_nucleotides>
                  <number_encoded_amino_acids>358</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>TNRNFPFVNRTIQLQTLRHTFVFQQPSFKQSIRMARSALDEMSATGAFERTASTFRNIVSREPGSVFPVESGRYHLYISYACPWASRCLAYLKIKGLDQAIDFTSVKPVWERTKDSDEHTGWVFASSSTEEAGADLDPLNGAKSIRELYELASTNYSGKYTVPVLWDKKLKTIVNNESAEIIRMFNSEFNDIAENAALDLYPPHLQSLINEANEWIYDGINNGVYQCGFAKKQEPYDEAVQKVYKALDKCEEILSKQRYICGDQVTEADIRLFVTLIRFDEVYAVYFKCNKKLLREYPNLFNYTKDIFQIPGMSSTVNMEHIKKHYYRSHPSINPFGIIPQGPNIDYSSPHDREKFSK*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="3">
          <exon_coordinates>
            <exon e_start="90761" e_stop="91276"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.992"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.992">
            <gDNA_exon_boundary e_start="90761" e_stop="91276" e_length="516"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="90761" stop="91276"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E241526" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="8" AGS_serial="3" gDNA_strand="+"/>
          <translation>
            <gDNA_template>ACTTTTCATTGATAAATGCTTGGAGAAACCTTGAGGCATTTGGGAGATTATAAAGGAAAACATTTCAGGTGTGGAAGTGGGGAAAACGTGAAGAGGTATTTCATTTCCGTGGGTATAATTAATGATGAAATAGCTCCTTGCCACGTGACTTAAGAAGGGACTTTGGAAATTGATCCAAAAGTACAACTTAGCTAGAGTCTAAATAAGAAATAACCGATCAGAAAGGATTTAGGATTGGAATTGATAGATGCGTGTTTAGGATTTAGAATTTAGGGATTAGATAGAGGAAGAGATAAGAAAGTGTATAGGCTCGTCAAGTAAAATAGAAGAGGATCTGAGATCTAAACTTAGTGAAGTATATTAAAGACAAGAAAATCATGGAATTGATGGAAAAGACATGTATGCATAAAAGAGAGCTAAATCTAAGATTAGAAACATATACAACTTATCAATATTTATAATTATAAATACAACAAAATAATGATAAAATGATATATTTTTTATATAATCATCATC</gDNA_template>
            <first_frame> T  F  H  *  *  M  L  G  E  T  L  R  H  L  G  D  Y  K  G  K  H  F  R  C  G  S  G  E  N  V  K  R  Y  F  I  S  V  G  I  I  N  D  E  I  A  P  C  H  V  T  *  E  G  T  L  E  I  D  P  K  V  Q  L  S  *  S  L  N  K  K  *  P  I  R  K  D  L  G  L  E  L  I  D  A  C  L  G  F  R  I  *  G  L  D  R  G  R  D  K  K  V  Y  R  L  V  K  *  N  R  R  G  S  E  I  *  T  *  *  S  I  L  K  T  R  K  S  W  N  *  W  K  R  H  V  C  I  K  E  S  *  I  *  D  *  K  H  I  Q  L  I  N  I  Y  N  Y  K  Y  N  K  I  M  I  K  *  Y  I  F  Y  I  I  I  I </first_frame>
            <second_frame>  L  F  I  D  K  C  L  E  K  P  *  G  I  W  E  I  I  K  E  N  I  S  G  V  E  V  G  K  T  *  R  G  I  S  F  P  W  V  *  L  M  M  K  *  L  L  A  T  *  L  K  K  G  L  W  K  L  I  Q  K  Y  N  L  A  R  V  *  I  R  N  N  R  S  E  R  I  *  D  W  N  *  *  M  R  V  *  D  L  E  F  R  D  *  I  E  E  E  I  R  K  C  I  G  S  S  S  K  I  E  E  D  L  R  S  K  L  S  E  V  Y  *  R  Q  E  N  H  G  I  D  G  K  D  M  Y  A  *  K  R  A  K  S  K  I  R  N  I  Y  N  L  S  I  F  I  I  I  N  T  T  K  *  *  *  N  D  I  F  F  I  *  S  S   </second_frame>
            <third_frame>   F  S  L  I  N  A  W  R  N  L  E  A  F  G  R  L  *  R  K  T  F  Q  V  W  K  W  G  K  R  E  E  V  F  H  F  R  G  Y  N  *  *  *  N  S  S  L  P  R  D  L  R  R  D  F  G  N  *  S  K  S  T  T  *  L  E  S  K  *  E  I  T  D  Q  K  G  F  R  I  G  I  D  R  C  V  F  R  I  *  N  L  G  I  R  *  R  K  R  *  E  S  V  *  A  R  Q  V  K  *  K  R  I  *  D  L  N  L  V  K  Y  I  K  D  K  K  I  M  E  L  M  E  K  T  C  M  H  K  R  E  L  N  L  R  L  E  T  Y  T  T  Y  Q  Y  L  *  L  *  I  Q  Q  N  N  D  K  M  I  Y  F  L  Y  N  H  H  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <none gDNA_id="C02HBa0320M09.4"/>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="9" PGL_strand="+" PGL_start="103054" PGL_stop="111058"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="103054" e_stop="103257"/>
            <exon e_start="103708" e_stop="103767"/>
            <exon e_start="103882" e_stop="104425"/>
            <exon e_start="104813" e_stop="104956"/>
            <exon e_start="109076" e_stop="109316"/>
            <exon e_start="109427" e_stop="109927"/>
            <exon e_start="110391" e_stop="111058"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.906" acc_prob="0.949" e_score="0.995"/>
          <exon-intron don_prob="0.477" acc_prob="0.671" e_score="1.000"/>
          <exon-intron don_prob="0.915" acc_prob="0.986" e_score="1.000"/>
          <exon-intron don_prob="0.999" acc_prob="0.990" e_score="1.000"/>
          <exon-intron don_prob="0.977" acc_prob="0.984" e_score="1.000"/>
          <exon-intron don_prob="1.000" acc_prob="0.971" e_score="1.000"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.995">
            <gDNA_exon_boundary e_start="103054" e_stop="103257" e_length="204"/>
          </exon>
          <intron i_serial="1" don_prob="0.906" acc_prob="0.949">
            <gDNA_intron_boundary i_start="103258" i_stop="103707" i_length="450"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="103708" e_stop="103767" e_length="60"/>
          </exon>
          <intron i_serial="2" don_prob="0.477" acc_prob="0.671">
            <gDNA_intron_boundary i_start="103768" i_stop="103881" i_length="114"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="103882" e_stop="104425" e_length="544"/>
          </exon>
          <intron i_serial="3" don_prob="0.915" acc_prob="0.986">
            <gDNA_intron_boundary i_start="104426" i_stop="104812" i_length="387"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="104813" e_stop="104956" e_length="144"/>
          </exon>
          <intron i_serial="4" don_prob="0.999" acc_prob="0.990">
            <gDNA_intron_boundary i_start="104957" i_stop="109075" i_length="4119"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="109076" e_stop="109316" e_length="241"/>
          </exon>
          <intron i_serial="5" don_prob="0.977" acc_prob="0.984">
            <gDNA_intron_boundary i_start="109317" i_stop="109426" i_length="110"/>
          </intron>
          <exon e_serial="6" e_score="1.000">
            <gDNA_exon_boundary e_start="109427" e_stop="109927" e_length="501"/>
          </exon>
          <intron i_serial="6" don_prob="1.000" acc_prob="0.971">
            <gDNA_intron_boundary i_start="109928" i_stop="110390" i_length="463"/>
          </intron>
          <exon e_serial="7" e_score="1.000">
            <gDNA_exon_boundary e_start="110391" e_stop="111058" e_length="668"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="103054" stop="103257"/>
              <exon start="103708" stop="103767"/>
              <exon start="103882" stop="104425"/>
              <exon start="104813" stop="104956"/>
              <exon start="109076" stop="109316"/>
              <exon start="109427" stop="109927"/>
              <exon start="110391" stop="111058"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E745161" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="9" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>TAGGCACGCGCGCACAAGCACAGACAAATAGAGCATTGGATTGTGATTCTACTGCAGATTTAGGATAATGGGGTTATTCAATTGAGTGAAGAAAGTTTCTTGGATTAATTTGGTAGATAAGTGTGGAGAGGGGCCTTCTTTTTGAAGTCTTTACTAGGGCAATTTTTTCTGGGGATTTTTCAGGGACTTCATTGTTGCTGACAG : GTGCAGCTTATCGATTACTTTGGTCTGTACAGTGTTATAAGGTGCCTTGGTATGGATATG : GTTGAATTAGGGGGGGCTTTTGCAGCTAAGCAGATGTTTTAATGAATGACCAGACAGAAAAGCTCAAAATATGGAAAGACTGGATTTAGGATTCAATCACTCTGGATCTGTGCAATCAGAGGAGTCAGCCCTGGATTTGGAGAGAAATTATTTTAACCAACTTCCTTTGTCAAGTCCACCACCACTGCAAGCCTTTGCATCAGGTTGTCAGGTCGCTGAGAGCAATGCTGCCTACTTCTCATGGCCTTGTCGCTTAGATGCTGCTGAGGATCGGGCCAATTACTTTGGTAACCTTCAGAAGGGGGTTTTACCTGAAACCCTGGGAGGACATCCCACGGGACAGCAAGCTACAACATTGCTTGAAGTTATGACCATTAGAGCATTTCATAGCAAAAACTTGCGTCGCTTTAGTCTTGGTACAGCAATCGGATTTCGTATCCGGCGAGGTGCTTTGACAGAGATACCAGCTATTCTTGTCTTTGTTGCCAGAAAAGTTCACAGGCAATGGCTCAACCTTGTCCAATGTCTACCGGCTTTTCTTGAG : GGACCAGGTGGTGTTTGGTGTGATGTTGATGTTGTGGAGTTCTCATACTTTGGGGCACCGGCAGCAACTCCAAAGGAACAGCTATATACTGAACTTGTTGATGGTTTACGGGGAAGTGATCCATGCATTGGTTCTGGTTCCCAG : GTTGCTAGTCAGGAAACATATGGAACCTTGGGTGCGATTGTTAAAAGTCGGACAGGTATCAGGCAGGTCGGTTTCCTTACCAATCGTCATGTAGCTGTTGACTTGGATTATCCAAGCCAGAAAATGTTTCATCCTCTGCCACCTAGCCTGGGGCCTGGGGTGTATTTAGGTGCTGTAGAGAGGGCTACATCCTTCATAACAGATGATCTTTGGTATGGCATATTTGCTGGTACAAATCCAG : AAACGTTTGTTCGAGCTGATGGAGCATTTATTCCATTTGCAGAAGATTTCAACATGTTGAATGTAACGACGTCTGTGAAAGGAATAGGAGACATAGGTGATGTCAATAAAATAGACTTACAGTCTCCTGTCGGTAGTGTCATTGGTAGGCAAGTGGTGAAAGTTGGAAGGAGCTCTGGTCTTACGACTGGAAACATTATGGCCTATGCCCTGGAGTATAATGATGAAAAAGGAATTTGTTTCTTTACAGATTTTCTAGTTGTTGGTGAGAACCAACAGACATTTGATCTTGAAGGTGACAGTGGTAGCCTCATTCTCTTGACTAGCCCTGAGGGGGAGAAGCCACGACCTATAGGAATAATTTGGGGGGGAACTGCCAATCGAGGTCGTTTAAAATTGAGAGTTGGCCAACCTCCTGAGAATTGGACTAGTGGGGTTGACTTGGGGCGTCTCCTTGATCTTCTTGAACTTGATCTCATTACATCCAACGAGAGTCTCCAAG : TTGCATTGCAAGATCAAATTATTGCATCAGCTGCGGGTATTGGTTCGGCTGTTGGAGGGTCATCACCAGCCGAGCGGATTCAACTGAAAGCTGAAGTAAACTTTGAGCCCATCAATTTAAACGTCCGACAAGATCCCATCGATGATGAATCTGACGAAGGGGTAGTTCCACCACTTGAGCATAAACACTTCCACATTCAGGATGGAAATAAAGCAACTCCTTGCGTCGAGCATCAGTTTATCCCAAGTGTCTCTGGGATTCAACATGGAAATGGGGAACTAAAAAGACTCTCTGTGGTGGGAGGATCAGATGATGAGATGTATGTTTCTTTGCAGTTAGGGGAGCAGCGCGAACCAAAGAGAAGGAAACAATGATGAGTCGTCTCCGTTTGCCAAAATAAAAAAAAGAGTGAATTGCTTCATTTTATCTGCTTCATTTGTCTTTGGAAGGCTCAGTCATGCATTGAGCTGGGAGGAGTTGGAGTATTATTTAAGCCTCCCACCAGTATGAGTATTATTATTGTTATTATTATTCTTTCACTTTTAATTCATGAAGCTACATATAGAGGTTAGATATTAAGTTGTACAATATGTAAGAAATGTGTTTAGAAGAGAATTGTATCTATTTGTTGTATCATTTCTGTGAAGCTATCATACAAAATTTATGAA</gDNA_template>
            <first_frame> *  A  R  A  H  K  H  R  Q  I  E  H  W  I  V  I  L  L  Q  I  *  D  N  G  V  I  Q  L  S  E  E  S  F  L  D  *  F  G  R  *  V  W  R  G  A  F  F  L  K  S  L  L  G  Q  F  F  L  G  I  F  Q  G  L  H  C  C  *  Q  :  V  Q  L  I  D  Y  F  G  L  Y  S  V  I  R  C  L  G  M  D  M  :  V  E  L  G  G  A  F  A  A  K  Q  M  F  *  *  M  T  R  Q  K  S  S  K  Y  G  K  T  G  F  R  I  Q  S  L  W  I  C  A  I  R  G  V  S  P  G  F  G  E  K  L  F  *  P  T  S  F  V  K  S  T  T  T  A  S  L  C  I  R  L  S  G  R  *  E  Q  C  C  L  L  L  M  A  L  S  L  R  C  C  *  G  S  G  Q  L  L  W  *  P  S  E  G  G  F  T  *  N  P  G  R  T  S  H  G  T  A  S  Y  N  I  A  *  S  Y  D  H  *  S  I  S  *  Q  K  L  A  S  L  *  S  W  Y  S  N  R  I  S  Y  P  A  R  C  F  D  R  D  T  S  Y  S  C  L  C  C  Q  K  S  S  Q  A  M  A  Q  P  C  P  M  S  T  G  F  S  *   : G  T  R  W  C  L  V  *  C  *  C  C  G  V  L  I  L  W  G  T  G  S  N  S  K  G  T  A  I  Y  *  T  C  *  W  F  T  G  K  *  S  M  H  W  F  W  F  P   : G  C  *  S  G  N  I  W  N  L  G  C  D  C  *  K  S  D  R  Y  Q  A  G  R  F  P  Y  Q  S  S  C  S  C  *  L  G  L  S  K  P  E  N  V  S  S  S  A  T  *  P  G  A  W  G  V  F  R  C  C  R  E  G  Y  I  L  H  N  R  *  S  L  V  W  H  I  C  W  Y  K  S  R :   N  V  C  S  S  *  W  S  I  Y  S  I  C  R  R  F  Q  H  V  E  C  N  D  V  C  E  R  N  R  R  H  R  *  C  Q  *  N  R  L  T  V  S  C  R  *  C  H  W  *  A  S  G  E  S  W  K  E  L  W  S  Y  D  W  K  H  Y  G  L  C  P  G  V  *  *  *  K  R  N  L  F  L  Y  R  F  S  S  C  W  *  E  P  T  D  I  *  S  *  R  *  Q  W  *  P  H  S  L  D  *  P  *  G  G  E  A  T  T  Y  R  N  N  L  G  G  N  C  Q  S  R  S  F  K  I  E  S  W  P  T  S  *  E  L  D  *  W  G  *  L  G  A  S  P  *  S  S  *  T  *  S  H  Y  I  Q  R  E  S  P  S :   C  I  A  R  S  N  Y  C  I  S  C  G  Y  W  F  G  C  W  R  V  I  T  S  R  A  D  S  T  E  S  *  S  K  L  *  A  H  Q  F  K  R  P  T  R  S  H  R  *  *  I  *  R  R  G  S  S  T  T  *  A  *  T  L  P  H  S  G  W  K  *  S  N  S  L  R  R  A  S  V  Y  P  K  C  L  W  D  S  T  W  K  W  G  T  K  K  T  L  C  G  G  R  I  R  *  *  D  V  C  F  F  A  V  R  G  A  A  R  T  K  E  K  E  T  M  M  S  R  L  R  L  P  K  *  K  K  E  *  I  A  S  F  Y  L  L  H  L  S  L  E  G  S  V  M  H  *  A  G  R  S  W  S  I  I  *  A  S  H  Q  Y  E  Y  Y  Y  C  Y  Y  Y  S  F  T  F  N  S  *  S  Y  I  *  R  L  D  I  K  L  Y  N  M  *  E  M  C  L  E  E  N  C  I  Y  L  L  Y  H  F  C  E  A  I  I  Q  N  L  *  </first_frame>
            <second_frame>  R  H  A  R  T  S  T  D  K  *  S  I  G  L  *  F  Y  C  R  F  R  I  M  G  L  F  N  *  V  K  K  V  S  W  I  N  L  V  D  K  C  G  E  G  P  S  F  *  S  L  Y  *  G  N  F  F  W  G  F  F  R  D  F  I  V  A  D  R :   C  S  L  S  I  T  L  V  C  T  V  L  *  G  A  L  V  W  I  W :   L  N  *  G  G  L  L  Q  L  S  R  C  F  N  E  *  P  D  R  K  A  Q  N  M  E  R  L  D  L  G  F  N  H  S  G  S  V  Q  S  E  E  S  A  L  D  L  E  R  N  Y  F  N  Q  L  P  L  S  S  P  P  P  L  Q  A  F  A  S  G  C  Q  V  A  E  S  N  A  A  Y  F  S  W  P  C  R  L  D  A  A  E  D  R  A  N  Y  F  G  N  L  Q  K  G  V  L  P  E  T  L  G  G  H  P  T  G  Q  Q  A  T  T  L  L  E  V  M  T  I  R  A  F  H  S  K  N  L  R  R  F  S  L  G  T  A  I  G  F  R  I  R  R  G  A  L  T  E  I  P  A  I  L  V  F  V  A  R  K  V  H  R  Q  W  L  N  L  V  Q  C  L  P  A  F  L  E  :  G  P  G  G  V  W  C  D  V  D  V  V  E  F  S  Y  F  G  A  P  A  A  T  P  K  E  Q  L  Y  T  E  L  V  D  G  L  R  G  S  D  P  C  I  G  S  G  S  Q  :  V  A  S  Q  E  T  Y  G  T  L  G  A  I  V  K  S  R  T  G  I  R  Q  V  G  F  L  T  N  R  H  V  A  V  D  L  D  Y  P  S  Q  K  M  F  H  P  L  P  P  S  L  G  P  G  V  Y  L  G  A  V  E  R  A  T  S  F  I  T  D  D  L  W  Y  G  I  F  A  G  T  N  P   : E  T  F  V  R  A  D  G  A  F  I  P  F  A  E  D  F  N  M  L  N  V  T  T  S  V  K  G  I  G  D  I  G  D  V  N  K  I  D  L  Q  S  P  V  G  S  V  I  G  R  Q  V  V  K  V  G  R  S  S  G  L  T  T  G  N  I  M  A  Y  A  L  E  Y  N  D  E  K  G  I  C  F  F  T  D  F  L  V  V  G  E  N  Q  Q  T  F  D  L  E  G  D  S  G  S  L  I  L  L  T  S  P  E  G  E  K  P  R  P  I  G  I  I  W  G  G  T  A  N  R  G  R  L  K  L  R  V  G  Q  P  P  E  N  W  T  S  G  V  D  L  G  R  L  L  D  L  L  E  L  D  L  I  T  S  N  E  S  L  Q   : V  A  L  Q  D  Q  I  I  A  S  A  A  G  I  G  S  A  V  G  G  S  S  P  A  E  R  I  Q  L  K  A  E  V  N  F  E  P  I  N  L  N  V  R  Q  D  P  I  D  D  E  S  D  E  G  V  V  P  P  L  E  H  K  H  F  H  I  Q  D  G  N  K  A  T  P  C  V  E  H  Q  F  I  P  S  V  S  G  I  Q  H  G  N  G  E  L  K  R  L  S  V  V  G  G  S  D  D  E  M  Y  V  S  L  Q  L  G  E  Q  R  E  P  K  R  R  K  Q  *  *  V  V  S  V  C  Q  N  K  K  K  S  E  L  L  H  F  I  C  F  I  C  L  W  K  A  Q  S  C  I  E  L  G  G  V  G  V  L  F  K  P  P  T  S  M  S  I  I  I  V  I  I  I  L  S  L  L  I  H  E  A  T  Y  R  G  *  I  L  S  C  T  I  C  K  K  C  V  *  K  R  I  V  S  I  C  C  I  I  S  V  K  L  S  Y  K  I  Y  E </second_frame>
            <third_frame>   G  T  R  A  Q  A  Q  T  N  R  A  L  D  C  D  S  T  A  D  L  G  *  W  G  Y  S  I  E  *  R  K  F  L  G  L  I  W  *  I  S  V  E  R  G  L  L  F  E  V  F  T  R  A  I  F  S  G  D  F  S  G  T  S  L  L  L  T   : G  A  A  Y  R  L  L  W  S  V  Q  C  Y  K  V  P  W  Y  G  Y   : G  *  I  R  G  G  F  C  S  *  A  D  V  L  M  N  D  Q  T  E  K  L  K  I  W  K  D  W  I  *  D  S  I  T  L  D  L  C  N  Q  R  S  Q  P  W  I  W  R  E  I  I  L  T  N  F  L  C  Q  V  H  H  H  C  K  P  L  H  Q  V  V  R  S  L  R  A  M  L  P  T  S  H  G  L  V  A  *  M  L  L  R  I  G  P  I  T  L  V  T  F  R  R  G  F  Y  L  K  P  W  E  D  I  P  R  D  S  K  L  Q  H  C  L  K  L  *  P  L  E  H  F  I  A  K  T  C  V  A  L  V  L  V  Q  Q  S  D  F  V  S  G  E  V  L  *  Q  R  Y  Q  L  F  L  S  L  L  P  E  K  F  T  G  N  G  S  T  L  S  N  V  Y  R  L  F  L  R :   D  Q  V  V  F  G  V  M  L  M  L  W  S  S  H  T  L  G  H  R  Q  Q  L  Q  R  N  S  Y  I  L  N  L  L  M  V  Y  G  E  V  I  H  A  L  V  L  V  P  R :   L  L  V  R  K  H  M  E  P  W  V  R  L  L  K  V  G  Q  V  S  G  R  S  V  S  L  P  I  V  M  *  L  L  T  W  I  I  Q  A  R  K  C  F  I  L  C  H  L  A  W  G  L  G  C  I  *  V  L  *  R  G  L  H  P  S  *  Q  M  I  F  G  M  A  Y  L  L  V  Q  I  Q  :  K  R  L  F  E  L  M  E  H  L  F  H  L  Q  K  I  S  T  C  *  M  *  R  R  L  *  K  E  *  E  T  *  V  M  S  I  K  *  T  Y  S  L  L  S  V  V  S  L  V  G  K  W  *  K  L  E  G  A  L  V  L  R  L  E  T  L  W  P  M  P  W  S  I  M  M  K  K  E  F  V  S  L  Q  I  F  *  L  L  V  R  T  N  R  H  L  I  L  K  V  T  V  V  A  S  F  S  *  L  A  L  R  G  R  S  H  D  L  *  E  *  F  G  G  E  L  P  I  E  V  V  *  N  *  E  L  A  N  L  L  R  I  G  L  V  G  L  T  W  G  V  S  L  I  F  L  N  L  I  S  L  H  P  T  R  V  S  K  :  L  H  C  K  I  K  L  L  H  Q  L  R  V  L  V  R  L  L  E  G  H  H  Q  P  S  G  F  N  *  K  L  K  *  T  L  S  P  S  I  *  T  S  D  K  I  P  S  M  M  N  L  T  K  G  *  F  H  H  L  S  I  N  T  S  T  F  R  M  E  I  K  Q  L  L  A  S  S  I  S  L  S  Q  V  S  L  G  F  N  M  E  M  G  N  *  K  D  S  L  W  W  E  D  Q  M  M  R  C  M  F  L  C  S  *  G  S  S  A  N  Q  R  E  G  N  N  D  E  S  S  P  F  A  K  I  K  K  R  V  N  C  F  I  L  S  A  S  F  V  F  G  R  L  S  H  A  L  S  W  E  E  L  E  Y  Y  L  S  L  P  P  V  *  V  L  L  L  L  L  L  F  F  H  F  *  F  M  K  L  H  I  E  V  R  Y  *  V  V  Q  Y  V  R  N  V  F  R  R  E  L  Y  L  F  V  V  S  F  L  *  S  Y  H  T  K  F  M   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02HBa0320M09.4" strand="+"/>
                <serials PGL_serial="9" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="103931" stop="104425"/>
                    <exon start="104813" stop="104956"/>
                    <exon start="109076" stop="109316"/>
                    <exon start="109427" stop="109927"/>
                    <exon start="110391" stop="110764"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>1752</number_coding_nucleotides>
                  <number_encoded_amino_acids>584</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>PDRKAQNMERLDLGFNHSGSVQSEESALDLERNYFNQLPLSSPPPLQAFASGCQVAESNAAYFSWPCRLDAAEDRANYFGNLQKGVLPETLGGHPTGQQATTLLEVMTIRAFHSKNLRRFSLGTAIGFRIRRGALTEIPAILVFVARKVHRQWLNLVQCLPAFLEGPGGVWCDVDVVEFSYFGAPAATPKEQLYTELVDGLRGSDPCIGSGSQVASQETYGTLGAIVKSRTGIRQVGFLTNRHVAVDLDYPSQKMFHPLPPSLGPGVYLGAVERATSFITDDLWYGIFAGTNPETFVRADGAFIPFAEDFNMLNVTTSVKGIGDIGDVNKIDLQSPVGSVIGRQVVKVGRSSGLTTGNIMAYALEYNDEKGICFFTDFLVVGENQQTFDLEGDSGSLILLTSPEGEKPRPIGIIWGGTANRGRLKLRVGQPPENWTSGVDLGRLLDLLELDLITSNESLQVALQDQIIASAAGIGSAVGGSSPAERIQLKAEVNFEPINLNVRQDPIDDESDEGVVPPLEHKHFHIQDGNKATPCVEHQFIPSVSGIQHGNGELKRLSVVGGSDDEMYVSLQLGEQREPKRRKQ*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C02HBa0320M09.4" strand="+"/>
                <serials PGL_serial="9" AGS_serial="1" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="110768" stop="110962"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>192</number_coding_nucleotides>
                  <number_encoded_amino_acids>64</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>VVSVCQNKKKSELLHFICFICLWKAQSCIELGGVGVLFKPPTSMSIIIVIIILSLLIHEATYRG*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="10" PGL_strand="-" PGL_start="119894" PGL_stop="107053"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="119894" e_stop="119623"/>
            <exon e_start="119442" e_stop="119351"/>
            <exon e_start="116812" e_stop="116694"/>
            <exon e_start="116348" e_stop="116213"/>
            <exon e_start="116059" e_stop="116008"/>
            <exon e_start="114714" e_stop="114614"/>
            <exon e_start="114065" e_stop="113883"/>
            <exon e_start="113647" e_stop="113490"/>
            <exon e_start="113379" e_stop="113325"/>
            <exon e_start="113205" e_stop="113152"/>
            <exon e_start="112193" e_stop="111553"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.977" acc_prob="1.000" e_score="1.000"/>
          <exon-intron don_prob="0.991" acc_prob="0.900" e_score="1.000"/>
          <exon-intron don_prob="0.984" acc_prob="0.986" e_score="1.000"/>
          <exon-intron don_prob="0.937" acc_prob="0.999" e_score="1.000"/>
          <exon-intron don_prob="0.986" acc_prob="0.942" e_score="1.000"/>
          <exon-intron don_prob="0.942" acc_prob="0.971" e_score="1.000"/>
          <exon-intron don_prob="0.993" acc_prob="0.996" e_score="1.000"/>
          <exon-intron don_prob="0.983" acc_prob="0.997" e_score="1.000"/>
          <exon-intron don_prob="0.975" acc_prob="0.996" e_score="1.000"/>
          <exon-intron don_prob="0.997" acc_prob="0.996" e_score="1.000"/>
          <exon-only e_score="0.973"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="119894" e_stop="119623" e_length="272"/>
          </exon>
          <intron i_serial="1" don_prob="0.977" acc_prob="1.000">
            <gDNA_intron_boundary i_start="119622" i_stop="119443" i_length="180"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="119442" e_stop="119351" e_length="92"/>
          </exon>
          <intron i_serial="2" don_prob="0.991" acc_prob="0.900">
            <gDNA_intron_boundary i_start="119350" i_stop="116813" i_length="2538"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="116812" e_stop="116694" e_length="119"/>
          </exon>
          <intron i_serial="3" don_prob="0.984" acc_prob="0.986">
            <gDNA_intron_boundary i_start="116693" i_stop="116349" i_length="345"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="116348" e_stop="116213" e_length="136"/>
          </exon>
          <intron i_serial="4" don_prob="0.937" acc_prob="0.999">
            <gDNA_intron_boundary i_start="116212" i_stop="116060" i_length="153"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="116059" e_stop="116008" e_length="52"/>
          </exon>
          <intron i_serial="5" don_prob="0.986" acc_prob="0.942">
            <gDNA_intron_boundary i_start="116007" i_stop="114715" i_length="1293"/>
          </intron>
          <exon e_serial="6" e_score="1.000">
            <gDNA_exon_boundary e_start="114714" e_stop="114614" e_length="101"/>
          </exon>
          <intron i_serial="6" don_prob="0.942" acc_prob="0.971">
            <gDNA_intron_boundary i_start="114613" i_stop="114066" i_length="548"/>
          </intron>
          <exon e_serial="7" e_score="1.000">
            <gDNA_exon_boundary e_start="114065" e_stop="113883" e_length="183"/>
          </exon>
          <intron i_serial="7" don_prob="0.993" acc_prob="0.996">
            <gDNA_intron_boundary i_start="113882" i_stop="113648" i_length="235"/>
          </intron>
          <exon e_serial="8" e_score="1.000">
            <gDNA_exon_boundary e_start="113647" e_stop="113490" e_length="158"/>
          </exon>
          <intron i_serial="8" don_prob="0.983" acc_prob="0.997">
            <gDNA_intron_boundary i_start="113489" i_stop="113380" i_length="110"/>
          </intron>
          <exon e_serial="9" e_score="1.000">
            <gDNA_exon_boundary e_start="113379" e_stop="113325" e_length="55"/>
          </exon>
          <intron i_serial="9" don_prob="0.975" acc_prob="0.996">
            <gDNA_intron_boundary i_start="113324" i_stop="113206" i_length="119"/>
          </intron>
          <exon e_serial="10" e_score="1.000">
            <gDNA_exon_boundary e_start="113205" e_stop="113152" e_length="54"/>
          </exon>
          <intron i_serial="10" don_prob="0.997" acc_prob="0.996">
            <gDNA_intron_boundary i_start="113151" i_stop="112194" i_length="958"/>
          </intron>
          <exon e_serial="11" e_score="0.973">
            <gDNA_exon_boundary e_start="112193" e_stop="111553" e_length="641"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="119894" stop="119623"/>
              <exon start="119442" stop="119351"/>
              <exon start="116812" stop="116694"/>
              <exon start="116348" stop="116254"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E322997" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="119870" stop="119623"/>
              <exon start="119442" stop="119407"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E276637" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="119867" stop="119623"/>
              <exon start="119442" stop="119351"/>
              <exon start="116812" stop="116694"/>
              <exon start="116348" stop="116213"/>
              <exon start="116059" stop="116008"/>
              <exon start="114714" stop="114614"/>
              <exon start="114065" stop="113883"/>
              <exon start="113647" stop="113490"/>
              <exon start="113379" stop="113325"/>
              <exon start="113205" stop="113152"/>
              <exon start="112193" stop="111553"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E747099" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="119698" stop="119623"/>
              <exon start="119442" stop="119351"/>
              <exon start="116812" stop="116694"/>
              <exon start="116348" stop="116213"/>
              <exon start="116059" stop="116008"/>
              <exon start="114714" stop="114614"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E212792" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="119392" stop="119351"/>
              <exon start="116812" stop="116694"/>
              <exon start="116348" stop="116213"/>
              <exon start="116059" stop="116008"/>
              <exon start="114714" stop="114614"/>
              <exon start="114065" stop="113973"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E269598" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="116802" stop="116694"/>
              <exon start="116348" stop="116213"/>
              <exon start="116059" stop="116008"/>
              <exon start="114714" stop="114614"/>
              <exon start="114065" stop="113893"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E241402" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="116712" stop="116694"/>
              <exon start="116348" stop="116213"/>
              <exon start="116059" stop="116008"/>
              <exon start="114714" stop="114614"/>
              <exon start="114065" stop="113883"/>
              <exon start="113647" stop="113543"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E340807" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="116309" stop="116213"/>
              <exon start="116059" stop="116008"/>
              <exon start="114714" stop="114614"/>
              <exon start="114065" stop="113883"/>
              <exon start="113647" stop="113490"/>
              <exon start="113379" stop="113325"/>
              <exon start="113205" stop="113199"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E213857" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="116029" stop="116008"/>
              <exon start="114714" stop="114614"/>
              <exon start="114065" stop="113883"/>
              <exon start="113647" stop="113490"/>
              <exon start="113379" stop="113325"/>
              <exon start="113205" stop="113152"/>
              <exon start="112193" stop="111994"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E699605" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="114699" stop="114614"/>
              <exon start="114065" stop="113883"/>
              <exon start="113647" stop="113490"/>
              <exon start="113379" stop="113325"/>
              <exon start="113205" stop="113152"/>
              <exon start="112193" stop="112155"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E327971" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="114699" stop="114614"/>
              <exon start="114065" stop="113883"/>
              <exon start="113647" stop="113490"/>
              <exon start="113379" stop="113325"/>
              <exon start="113205" stop="113152"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E328400" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="113559" stop="113490"/>
              <exon start="113379" stop="113325"/>
              <exon start="113205" stop="113152"/>
              <exon start="112193" stop="111565"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E700161" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="10" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>TTTCTGTAATCTGCAATTTGACGTTAGGGGAATGGCGATGTTAATAGAGGAGCTGATTAAGTCAATAGAGATGTGGCTGAAGCTGATCAAGAAGCCTCAGGAGTACATTGACCCGACACTTGATCCAGTTCTATTAGTTCCGGGTGTTGCCGGGTCGATTCTCAACGCTGTTGATAAGAAAACAGGTCGGACCGAACGGGTTTGGGTCCGAATACTTGGTGCCGATCATGAGTTTTGTGATAAGTTATGGTGTCGTTTTGACCCTTCTACCG : GTAAAACTACCAATTTAGACCCTGACACAAGCATTGAGGTCCCGGAGGACAGATATGGACTGTATGCTATTGATAATTTGGATCCTGACATG : ATTATTGGGTCTGATTGTGTATATTATTACCATGATATGATAGTTGAGATGCTCAGCTGGGGTTACCAAGAAGGAAAAACACTATTTGGATTTGGCTATGATTTCCGGCAGAGCAACAG : GCTTCAGGAAACAATGGAGTGTTTTGCGCAAAAGCTAGAATCCATACATACTGCGTCAGGAGGCAAGAAGATAAACATTATAAGTCATTCTATGGGTGGTCTTCTGGTTAAATGTTTCATGGCTCTCCACAGTGAT : ATTTTTGAAAAATATGTGAAGAATTGGATTGCAATAGCTGCACCATTCCAAG : GTGCTCCTGGATATATTACCTCTTCATTATTGAACGGAACATCATTTGTGCATGGATGGGAAGAGAGGTTTTTCATATCCAAATGGAGTATGCATCAACTG : TTGATCGAGTGTCCGTCAATATATGAATTAATGGGGTGTCCTGATTTCCACTGGGAGCATGCACCAGTTCTAGAAATTTGGAAGGAAAAATCTAACAGTAATGGAGAGTCCTCCGTTGTACTCGAGTCTTACTCTCCACTGGAAGCTGTATCAGTGTATGAGTTAGCTCTTGCAAACAACAAG : GTTACTTATAATGGAGAAAAAATTTCTCTGCCGTTCAATCTGGAACTCTTGAAATGGGCTAATAAGACCCGAGAGATATTGTGCCATGCAAAGGTTCCTGATAAAGTTAAGTTCTACAACATCTATGGGACCAATTATGAGACGCCTCATAGTGTCTG : TTATGGAAGTCAGAATGCACCCATTTCTGATCTTCAACAATTACCATTTGTCCAG : TCTAACTACATATCGGTTGATGGAGATGGTACAGTTCCAACAGAATCTGCAAAG : GCTGATGGGCTTAAAGCAGAAGCTAGGGTTGGAGTCCCTGGGGATCACAGAGGAATCGTCTGTGACCGCCACGTGTTTAGAGTGATCAAGCACTGGTTGCGAGCAGATCATGATCCTTATTACAATCCAATCAACGATTACGTTATCCTACCCACTTCATTTGACATCGAAAGGCACCATGAGAAAGGTTTGGATGTAACTTCTCTCAGAGAGGAGTGGGAAATTGTTTCAGAAAGCCAGGATGGCAAAGAGAATGCGGATAGCGGAAAGACAAAGGTGGGTTCTATATCTGTCTCTCATGTTGGAGATGACAATACTACGTGGGAAGAAGCCCATGCGACTCTTATTGTCCACCCTAAAAGTGAAGGTAAGCAACATGTAGAGTTGAATGCCATGTCTGTTTCTGCAAGGGCTTGAAACTTATATTACCATATGGTCAAAGGGGCTTTATTGTTTTATATCCATCTGTCTATTCCTCCTGATTTCTTCTGTATATAGAAAGTAATTGTGCTCCTGAACAGAACCATGTATGTATGTATATATATGTGCATATTAACGTTATCAAGTATGTGATGTGGATCAATCAAATAAGAAATTTGATTTCTTGTTCATCACTTGTTACTTTATATGTCAATGTCAAA</gDNA_template>
            <first_frame> F  L  *  S  A  I  *  R  *  G  N  G  D  V  N  R  G  A  D  *  V  N  R  D  V  A  E  A  D  Q  E  A  S  G  V  H  *  P  D  T  *  S  S  S  I  S  S  G  C  C  R  V  D  S  Q  R  C  *  *  E  N  R  S  D  R  T  G  L  G  P  N  T  W  C  R  S  *  V  L  *  *  V  M  V  S  F  *  P  F  Y  R :   *  N  Y  Q  F  R  P  *  H  K  H  *  G  P  G  G  Q  I  W  T  V  C  Y  *  *  F  G  S  *  H   : D  Y  W  V  *  L  C  I  L  L  P  *  Y  D  S  *  D  A  Q  L  G  L  P  R  R  K  N  T  I  W  I  W  L  *  F  P  A  E  Q  Q  :  A  S  G  N  N  G  V  F  C  A  K  A  R  I  H  T  Y  C  V  R  R  Q  E  D  K  H  Y  K  S  F  Y  G  W  S  S  G  *  M  F  H  G  S  P  Q  *   : Y  F  *  K  I  C  E  E  L  D  C  N  S  C  T  I  P  R :   C  S  W  I  Y  Y  L  F  I  I  E  R  N  I  I  C  A  W  M  G  R  E  V  F  H  I  Q  M  E  Y  A  S  T   : V  D  R  V  S  V  N  I  *  I  N  G  V  S  *  F  P  L  G  A  C  T  S  S  R  N  L  E  G  K  I  *  Q  *  W  R  V  L  R  C  T  R  V  L  L  S  T  G  S  C  I  S  V  *  V  S  S  C  K  Q  Q   : G  Y  L  *  W  R  K  N  F  S  A  V  Q  S  G  T  L  E  M  G  *  *  D  P  R  D  I  V  P  C  K  G  S  *  *  S  *  V  L  Q  H  L  W  D  Q  L  *  D  A  S  *  C  L  :  L  W  K  S  E  C  T  H  F  *  S  S  T  I  T  I  C  P   : V  *  L  H  I  G  *  W  R  W  Y  S  S  N  R  I  C  K   : G  *  W  A  *  S  R  S  *  G  W  S  P  W  G  S  Q  R  N  R  L  *  P  P  R  V  *  S  D  Q  A  L  V  A  S  R  S  *  S  L  L  Q  S  N  Q  R  L  R  Y  P  T  H  F  I  *  H  R  K  A  P  *  E  R  F  G  C  N  F  S  Q  R  G  V  G  N  C  F  R  K  P  G  W  Q  R  E  C  G  *  R  K  D  K  G  G  F  Y  I  C  L  S  C  W  R  *  Q  Y  Y  V  G  R  S  P  C  D  S  Y  C  P  P  *  K  *  R  *  A  T  C  R  V  E  C  H  V  C  F  C  K  G  L  K  L  I  L  P  Y  G  Q  R  G  F  I  V  L  Y  P  S  V  Y  S  S  *  F  L  L  Y  I  E  S  N  C  A  P  E  Q  N  H  V  C  M  Y  I  Y  V  H  I  N  V  I  K  Y  V  M  W  I  N  Q  I  R  N  L  I  S  C  S  S  L  V  T  L  Y  V  N  V  K </first_frame>
            <second_frame>  F  C  N  L  Q  F  D  V  R  G  M  A  M  L  I  E  E  L  I  K  S  I  E  M  W  L  K  L  I  K  K  P  Q  E  Y  I  D  P  T  L  D  P  V  L  L  V  P  G  V  A  G  S  I  L  N  A  V  D  K  K  T  G  R  T  E  R  V  W  V  R  I  L  G  A  D  H  E  F  C  D  K  L  W  C  R  F  D  P  S  T   : G  K  T  T  N  L  D  P  D  T  S  I  E  V  P  E  D  R  Y  G  L  Y  A  I  D  N  L  D  P  D  M  :  I  I  G  S  D  C  V  Y  Y  Y  H  D  M  I  V  E  M  L  S  W  G  Y  Q  E  G  K  T  L  F  G  F  G  Y  D  F  R  Q  S  N  R :   L  Q  E  T  M  E  C  F  A  Q  K  L  E  S  I  H  T  A  S  G  G  K  K  I  N  I  I  S  H  S  M  G  G  L  L  V  K  C  F  M  A  L  H  S  D  :  I  F  E  K  Y  V  K  N  W  I  A  I  A  A  P  F  Q   : G  A  P  G  Y  I  T  S  S  L  L  N  G  T  S  F  V  H  G  W  E  E  R  F  F  I  S  K  W  S  M  H  Q  L  :  L  I  E  C  P  S  I  Y  E  L  M  G  C  P  D  F  H  W  E  H  A  P  V  L  E  I  W  K  E  K  S  N  S  N  G  E  S  S  V  V  L  E  S  Y  S  P  L  E  A  V  S  V  Y  E  L  A  L  A  N  N  K  :  V  T  Y  N  G  E  K  I  S  L  P  F  N  L  E  L  L  K  W  A  N  K  T  R  E  I  L  C  H  A  K  V  P  D  K  V  K  F  Y  N  I  Y  G  T  N  Y  E  T  P  H  S  V  C :   Y  G  S  Q  N  A  P  I  S  D  L  Q  Q  L  P  F  V  Q  :  S  N  Y  I  S  V  D  G  D  G  T  V  P  T  E  S  A  K  :  A  D  G  L  K  A  E  A  R  V  G  V  P  G  D  H  R  G  I  V  C  D  R  H  V  F  R  V  I  K  H  W  L  R  A  D  H  D  P  Y  Y  N  P  I  N  D  Y  V  I  L  P  T  S  F  D  I  E  R  H  H  E  K  G  L  D  V  T  S  L  R  E  E  W  E  I  V  S  E  S  Q  D  G  K  E  N  A  D  S  G  K  T  K  V  G  S  I  S  V  S  H  V  G  D  D  N  T  T  W  E  E  A  H  A  T  L  I  V  H  P  K  S  E  G  K  Q  H  V  E  L  N  A  M  S  V  S  A  R  A  *  N  L  Y  Y  H  M  V  K  G  A  L  L  F  Y  I  H  L  S  I  P  P  D  F  F  C  I  *  K  V  I  V  L  L  N  R  T  M  Y  V  C  I  Y  M  C  I  L  T  L  S  S  M  *  C  G  S  I  K  *  E  I  *  F  L  V  H  H  L  L  L  Y  M  S  M  S   </second_frame>
            <third_frame>   S  V  I  C  N  L  T  L  G  E  W  R  C  *  *  R  S  *  L  S  Q  *  R  C  G  *  S  *  S  R  S  L  R  S  T  L  T  R  H  L  I  Q  F  Y  *  F  R  V  L  P  G  R  F  S  T  L  L  I  R  K  Q  V  G  P  N  G  F  G  S  E  Y  L  V  P  I  M  S  F  V  I  S  Y  G  V  V  L  T  L  L  P  :  V  K  L  P  I  *  T  L  T  Q  A  L  R  S  R  R  T  D  M  D  C  M  L  L  I  I  W  I  L  T  * :   L  L  G  L  I  V  Y  I  I  T  M  I  *  *  L  R  C  S  A  G  V  T  K  K  E  K  H  Y  L  D  L  A  M  I  S  G  R  A  T   : G  F  R  K  Q  W  S  V  L  R  K  S  *  N  P  Y  I  L  R  Q  E  A  R  R  *  T  L  *  V  I  L  W  V  V  F  W  L  N  V  S  W  L  S  T  V  I :   F  L  K  N  M  *  R  I  G  L  Q  *  L  H  H  S  K  :  V  L  L  D  I  L  P  L  H  Y  *  T  E  H  H  L  C  M  D  G  K  R  G  F  S  Y  P  N  G  V  C  I  N  C :   *  S  S  V  R  Q  Y  M  N  *  W  G  V  L  I  S  T  G  S  M  H  Q  F  *  K  F  G  R  K  N  L  T  V  M  E  S  P  P  L  Y  S  S  L  T  L  H  W  K  L  Y  Q  C  M  S  *  L  L  Q  T  T  R :   L  L  I  M  E  K  K  F  L  C  R  S  I  W  N  S  *  N  G  L  I  R  P  E  R  Y  C  A  M  Q  R  F  L  I  K  L  S  S  T  T  S  M  G  P  I  M  R  R  L  I  V  S   : V  M  E  V  R  M  H  P  F  L  I  F  N  N  Y  H  L  S  S :   L  T  T  Y  R  L  M  E  M  V  Q  F  Q  Q  N  L  Q  R :   L  M  G  L  K  Q  K  L  G  L  E  S  L  G  I  T  E  E  S  S  V  T  A  T  C  L  E  *  S  S  T  G  C  E  Q  I  M  I  L  I  T  I  Q  S  T  I  T  L  S  Y  P  L  H  L  T  S  K  G  T  M  R  K  V  W  M  *  L  L  S  E  R  S  G  K  L  F  Q  K  A  R  M  A  K  R  M  R  I  A  E  R  Q  R  W  V  L  Y  L  S  L  M  L  E  M  T  I  L  R  G  K  K  P  M  R  L  L  L  S  T  L  K  V  K  V  S  N  M  *  S  *  M  P  C  L  F  L  Q  G  L  E  T  Y  I  T  I  W  S  K  G  L  Y  C  F  I  S  I  C  L  F  L  L  I  S  S  V  Y  R  K  *  L  C  S  *  T  E  P  C  M  Y  V  Y  I  C  A  Y  *  R  Y  Q  V  C  D  V  D  Q  S  N  K  K  F  D  F  L  F  I  T  C  Y  F  I  C  Q  C  Q  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02HBa0320M09.4" strand="-"/>
                <serials PGL_serial="10" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="119893" stop="119623"/>
                    <exon start="119442" stop="119351"/>
                    <exon start="116812" stop="116694"/>
                    <exon start="116348" stop="116213"/>
                    <exon start="116059" stop="116008"/>
                    <exon start="114714" stop="114614"/>
                    <exon start="114065" stop="113883"/>
                    <exon start="113647" stop="113490"/>
                    <exon start="113379" stop="113325"/>
                    <exon start="113205" stop="113152"/>
                    <exon start="112193" stop="111777"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>1635</number_coding_nucleotides>
                  <number_encoded_amino_acids>545</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>FCNLQFDVRGMAMLIEELIKSIEMWLKLIKKPQEYIDPTLDPVLLVPGVAGSILNAVDKKTGRTERVWVRILGADHEFCDKLWCRFDPSTGKTTNLDPDTSIEVPEDRYGLYAIDNLDPDMIIGSDCVYYYHDMIVEMLSWGYQEGKTLFGFGYDFRQSNRLQETMECFAQKLESIHTASGGKKINIISHSMGGLLVKCFMALHSDIFEKYVKNWIAIAAPFQGAPGYITSSLLNGTSFVHGWEERFFISKWSMHQLLIECPSIYELMGCPDFHWEHAPVLEIWKEKSNSNGESSVVLESYSPLEAVSVYELALANNKVTYNGEKISLPFNLELLKWANKTREILCHAKVPDKVKFYNIYGTNYETPHSVCYGSQNAPISDLQQLPFVQSNYISVDGDGTVPTESAKADGLKAEARVGVPGDHRGIVCDRHVFRVIKHWLRADHDPYYNPINDYVILPTSFDIERHHEKGLDVTSLREEWEIVSESQDGKENADSGKTKVGSISVSHVGDDNTTWEEAHATLIVHPKSEGKQHVELNAMSVSARA*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="2">
          <exon_coordinates>
            <exon e_start="119894" e_stop="119623"/>
            <exon e_start="119442" e_stop="119351"/>
            <exon e_start="116812" e_stop="116694"/>
            <exon e_start="116348" e_stop="116213"/>
            <exon e_start="116059" e_stop="116008"/>
            <exon e_start="114714" e_stop="114614"/>
            <exon e_start="114065" e_stop="113883"/>
            <exon e_start="113647" e_stop="113490"/>
            <exon e_start="113379" e_stop="113325"/>
            <exon e_start="113205" e_stop="113152"/>
            <exon e_start="112193" e_stop="111584"/>
            <exon e_start="111208" e_stop="111201"/>
            <exon e_start="110938" e_stop="110884"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.977" acc_prob="1.000" e_score="1.000"/>
          <exon-intron don_prob="0.991" acc_prob="0.900" e_score="1.000"/>
          <exon-intron don_prob="0.984" acc_prob="0.986" e_score="1.000"/>
          <exon-intron don_prob="0.937" acc_prob="0.999" e_score="1.000"/>
          <exon-intron don_prob="0.986" acc_prob="0.942" e_score="1.000"/>
          <exon-intron don_prob="0.942" acc_prob="0.971" e_score="1.000"/>
          <exon-intron don_prob="0.993" acc_prob="0.996" e_score="1.000"/>
          <exon-intron don_prob="0.983" acc_prob="0.997" e_score="1.000"/>
          <exon-intron don_prob="0.975" acc_prob="0.996" e_score="1.000"/>
          <exon-intron don_prob="0.997" acc_prob="0.996" e_score="1.000"/>
          <exon-intron don_prob="0.000" acc_prob="0.488" e_score="1.000"/>
          <exon-intron don_prob="0.067" acc_prob="0.000" e_score="0.500"/>
          <exon-only e_score="0.618"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="119894" e_stop="119623" e_length="272"/>
          </exon>
          <intron i_serial="1" don_prob="0.977" acc_prob="1.000">
            <gDNA_intron_boundary i_start="119622" i_stop="119443" i_length="180"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="119442" e_stop="119351" e_length="92"/>
          </exon>
          <intron i_serial="2" don_prob="0.991" acc_prob="0.900">
            <gDNA_intron_boundary i_start="119350" i_stop="116813" i_length="2538"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="116812" e_stop="116694" e_length="119"/>
          </exon>
          <intron i_serial="3" don_prob="0.984" acc_prob="0.986">
            <gDNA_intron_boundary i_start="116693" i_stop="116349" i_length="345"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="116348" e_stop="116213" e_length="136"/>
          </exon>
          <intron i_serial="4" don_prob="0.937" acc_prob="0.999">
            <gDNA_intron_boundary i_start="116212" i_stop="116060" i_length="153"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="116059" e_stop="116008" e_length="52"/>
          </exon>
          <intron i_serial="5" don_prob="0.986" acc_prob="0.942">
            <gDNA_intron_boundary i_start="116007" i_stop="114715" i_length="1293"/>
          </intron>
          <exon e_serial="6" e_score="1.000">
            <gDNA_exon_boundary e_start="114714" e_stop="114614" e_length="101"/>
          </exon>
          <intron i_serial="6" don_prob="0.942" acc_prob="0.971">
            <gDNA_intron_boundary i_start="114613" i_stop="114066" i_length="548"/>
          </intron>
          <exon e_serial="7" e_score="1.000">
            <gDNA_exon_boundary e_start="114065" e_stop="113883" e_length="183"/>
          </exon>
          <intron i_serial="7" don_prob="0.993" acc_prob="0.996">
            <gDNA_intron_boundary i_start="113882" i_stop="113648" i_length="235"/>
          </intron>
          <exon e_serial="8" e_score="1.000">
            <gDNA_exon_boundary e_start="113647" e_stop="113490" e_length="158"/>
          </exon>
          <intron i_serial="8" don_prob="0.983" acc_prob="0.997">
            <gDNA_intron_boundary i_start="113489" i_stop="113380" i_length="110"/>
          </intron>
          <exon e_serial="9" e_score="1.000">
            <gDNA_exon_boundary e_start="113379" e_stop="113325" e_length="55"/>
          </exon>
          <intron i_serial="9" don_prob="0.975" acc_prob="0.996">
            <gDNA_intron_boundary i_start="113324" i_stop="113206" i_length="119"/>
          </intron>
          <exon e_serial="10" e_score="1.000">
            <gDNA_exon_boundary e_start="113205" e_stop="113152" e_length="54"/>
          </exon>
          <intron i_serial="10" don_prob="0.997" acc_prob="0.996">
            <gDNA_intron_boundary i_start="113151" i_stop="112194" i_length="958"/>
          </intron>
          <exon e_serial="11" e_score="1.000">
            <gDNA_exon_boundary e_start="112193" e_stop="111584" e_length="610"/>
          </exon>
          <intron i_serial="11" don_prob="0.000" acc_prob="0.488">
            <gDNA_intron_boundary i_start="111583" i_stop="111209" i_length="375"/>
          </intron>
          <exon e_serial="12" e_score="0.500">
            <gDNA_exon_boundary e_start="111208" e_stop="111201" e_length="8"/>
          </exon>
          <intron i_serial="12" don_prob="0.067" acc_prob="0.000">
            <gDNA_intron_boundary i_start="111200" i_stop="110939" i_length="262"/>
          </intron>
          <exon e_serial="13" e_score="0.618">
            <gDNA_exon_boundary e_start="110938" e_stop="110884" e_length="55"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="119894" stop="119623"/>
              <exon start="119442" stop="119351"/>
              <exon start="116812" stop="116694"/>
              <exon start="116348" stop="116254"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E322997" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="119870" stop="119623"/>
              <exon start="119442" stop="119407"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E276637" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="119698" stop="119623"/>
              <exon start="119442" stop="119351"/>
              <exon start="116812" stop="116694"/>
              <exon start="116348" stop="116213"/>
              <exon start="116059" stop="116008"/>
              <exon start="114714" stop="114614"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E212792" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="119392" stop="119351"/>
              <exon start="116812" stop="116694"/>
              <exon start="116348" stop="116213"/>
              <exon start="116059" stop="116008"/>
              <exon start="114714" stop="114614"/>
              <exon start="114065" stop="113973"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E269598" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="116802" stop="116694"/>
              <exon start="116348" stop="116213"/>
              <exon start="116059" stop="116008"/>
              <exon start="114714" stop="114614"/>
              <exon start="114065" stop="113893"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E241402" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="116712" stop="116694"/>
              <exon start="116348" stop="116213"/>
              <exon start="116059" stop="116008"/>
              <exon start="114714" stop="114614"/>
              <exon start="114065" stop="113883"/>
              <exon start="113647" stop="113543"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E340807" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="116309" stop="116213"/>
              <exon start="116059" stop="116008"/>
              <exon start="114714" stop="114614"/>
              <exon start="114065" stop="113883"/>
              <exon start="113647" stop="113490"/>
              <exon start="113379" stop="113325"/>
              <exon start="113205" stop="113199"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E213857" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="116029" stop="116008"/>
              <exon start="114714" stop="114614"/>
              <exon start="114065" stop="113883"/>
              <exon start="113647" stop="113490"/>
              <exon start="113379" stop="113325"/>
              <exon start="113205" stop="113152"/>
              <exon start="112193" stop="111994"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E699605" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="114699" stop="114614"/>
              <exon start="114065" stop="113883"/>
              <exon start="113647" stop="113490"/>
              <exon start="113379" stop="113325"/>
              <exon start="113205" stop="113152"/>
              <exon start="112193" stop="112155"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E327971" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="114699" stop="114614"/>
              <exon start="114065" stop="113883"/>
              <exon start="113647" stop="113490"/>
              <exon start="113379" stop="113325"/>
              <exon start="113205" stop="113152"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E328400" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="112013" stop="111584"/>
              <exon start="111208" stop="111201"/>
              <exon start="110938" stop="110884"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E712335" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="10" AGS_serial="2" gDNA_strand="-"/>
          <translation>
            <gDNA_template>TTTCTGTAATCTGCAATTTGACGTTAGGGGAATGGCGATGTTAATAGAGGAGCTGATTAAGTCAATAGAGATGTGGCTGAAGCTGATCAAGAAGCCTCAGGAGTACATTGACCCGACACTTGATCCAGTTCTATTAGTTCCGGGTGTTGCCGGGTCGATTCTCAACGCTGTTGATAAGAAAACAGGTCGGACCGAACGGGTTTGGGTCCGAATACTTGGTGCCGATCATGAGTTTTGTGATAAGTTATGGTGTCGTTTTGACCCTTCTACCG : GTAAAACTACCAATTTAGACCCTGACACAAGCATTGAGGTCCCGGAGGACAGATATGGACTGTATGCTATTGATAATTTGGATCCTGACATG : ATTATTGGGTCTGATTGTGTATATTATTACCATGATATGATAGTTGAGATGCTCAGCTGGGGTTACCAAGAAGGAAAAACACTATTTGGATTTGGCTATGATTTCCGGCAGAGCAACAG : GCTTCAGGAAACAATGGAGTGTTTTGCGCAAAAGCTAGAATCCATACATACTGCGTCAGGAGGCAAGAAGATAAACATTATAAGTCATTCTATGGGTGGTCTTCTGGTTAAATGTTTCATGGCTCTCCACAGTGAT : ATTTTTGAAAAATATGTGAAGAATTGGATTGCAATAGCTGCACCATTCCAAG : GTGCTCCTGGATATATTACCTCTTCATTATTGAACGGAACATCATTTGTGCATGGATGGGAAGAGAGGTTTTTCATATCCAAATGGAGTATGCATCAACTG : TTGATCGAGTGTCCGTCAATATATGAATTAATGGGGTGTCCTGATTTCCACTGGGAGCATGCACCAGTTCTAGAAATTTGGAAGGAAAAATCTAACAGTAATGGAGAGTCCTCCGTTGTACTCGAGTCTTACTCTCCACTGGAAGCTGTATCAGTGTATGAGTTAGCTCTTGCAAACAACAAG : GTTACTTATAATGGAGAAAAAATTTCTCTGCCGTTCAATCTGGAACTCTTGAAATGGGCTAATAAGACCCGAGAGATATTGTGCCATGCAAAGGTTCCTGATAAAGTTAAGTTCTACAACATCTATGGGACCAATTATGAGACGCCTCATAGTGTCTG : TTATGGAAGTCAGAATGCACCCATTTCTGATCTTCAACAATTACCATTTGTCCAG : TCTAACTACATATCGGTTGATGGAGATGGTACAGTTCCAACAGAATCTGCAAAG : GCTGATGGGCTTAAAGCAGAAGCTAGGGTTGGAGTCCCTGGGGATCACAGAGGAATCGTCTGTGACCGCCACGTGTTTAGAGTGATCAAGCACTGGTTGCGAGCAGATCATGATCCTTATTACAATCCAATCAACGATTACGTTATCCTACCCACTTCATTTGACATCGAAAGGCACCATGAGAAAGGTTTGGATGTAACTTCTCTCAGAGAGGAGTGGGAAATTGTTTCAGAAAGCCAGGATGGCAAAGAGAATGCGGATAGCGGAAAGACAAAGGTGGGTTCTATATCTGTCTCTCATGTTGGAGATGACAATACTACGTGGGAAGAAGCCCATGCGACTCTTATTGTCCACCCTAAAAGTGAAGGTAAGCAACATGTAGAGTTGAATGCCATGTCTGTTTCTGCAAGGGCTTGAAACTTATATTACCATATGGTCAAAGGGGCTTTATTGTTTTATATCCATCTGTCTATTCCTCCTGATTTCTTCTGTATATAGAAAGTAATTGTGCTCCTGAACAGAACCATGTATGTATGTATATATATGTGCATATTAACGTTATCAAGTATGTGATGTGGATCAATCAAATAAGAAATTTGATTTCTTGTTC : AAGCTAAG : AATTAAAAGTGAAAGAATAATAATAACAATAATAATACTCATACTGGTGGGAGGC</gDNA_template>
            <first_frame> F  L  *  S  A  I  *  R  *  G  N  G  D  V  N  R  G  A  D  *  V  N  R  D  V  A  E  A  D  Q  E  A  S  G  V  H  *  P  D  T  *  S  S  S  I  S  S  G  C  C  R  V  D  S  Q  R  C  *  *  E  N  R  S  D  R  T  G  L  G  P  N  T  W  C  R  S  *  V  L  *  *  V  M  V  S  F  *  P  F  Y  R :   *  N  Y  Q  F  R  P  *  H  K  H  *  G  P  G  G  Q  I  W  T  V  C  Y  *  *  F  G  S  *  H   : D  Y  W  V  *  L  C  I  L  L  P  *  Y  D  S  *  D  A  Q  L  G  L  P  R  R  K  N  T  I  W  I  W  L  *  F  P  A  E  Q  Q  :  A  S  G  N  N  G  V  F  C  A  K  A  R  I  H  T  Y  C  V  R  R  Q  E  D  K  H  Y  K  S  F  Y  G  W  S  S  G  *  M  F  H  G  S  P  Q  *   : Y  F  *  K  I  C  E  E  L  D  C  N  S  C  T  I  P  R :   C  S  W  I  Y  Y  L  F  I  I  E  R  N  I  I  C  A  W  M  G  R  E  V  F  H  I  Q  M  E  Y  A  S  T   : V  D  R  V  S  V  N  I  *  I  N  G  V  S  *  F  P  L  G  A  C  T  S  S  R  N  L  E  G  K  I  *  Q  *  W  R  V  L  R  C  T  R  V  L  L  S  T  G  S  C  I  S  V  *  V  S  S  C  K  Q  Q   : G  Y  L  *  W  R  K  N  F  S  A  V  Q  S  G  T  L  E  M  G  *  *  D  P  R  D  I  V  P  C  K  G  S  *  *  S  *  V  L  Q  H  L  W  D  Q  L  *  D  A  S  *  C  L  :  L  W  K  S  E  C  T  H  F  *  S  S  T  I  T  I  C  P   : V  *  L  H  I  G  *  W  R  W  Y  S  S  N  R  I  C  K   : G  *  W  A  *  S  R  S  *  G  W  S  P  W  G  S  Q  R  N  R  L  *  P  P  R  V  *  S  D  Q  A  L  V  A  S  R  S  *  S  L  L  Q  S  N  Q  R  L  R  Y  P  T  H  F  I  *  H  R  K  A  P  *  E  R  F  G  C  N  F  S  Q  R  G  V  G  N  C  F  R  K  P  G  W  Q  R  E  C  G  *  R  K  D  K  G  G  F  Y  I  C  L  S  C  W  R  *  Q  Y  Y  V  G  R  S  P  C  D  S  Y  C  P  P  *  K  *  R  *  A  T  C  R  V  E  C  H  V  C  F  C  K  G  L  K  L  I  L  P  Y  G  Q  R  G  F  I  V  L  Y  P  S  V  Y  S  S  *  F  L  L  Y  I  E  S  N  C  A  P  E  Q  N  H  V  C  M  Y  I  Y  V  H  I  N  V  I  K  Y  V  M  W  I  N  Q  I  R  N  L  I  S  C  S :   S  *   : E  L  K  V  K  E  *  *  *  Q  *  *  Y  S  Y  W  W  E   </first_frame>
            <second_frame>  F  C  N  L  Q  F  D  V  R  G  M  A  M  L  I  E  E  L  I  K  S  I  E  M  W  L  K  L  I  K  K  P  Q  E  Y  I  D  P  T  L  D  P  V  L  L  V  P  G  V  A  G  S  I  L  N  A  V  D  K  K  T  G  R  T  E  R  V  W  V  R  I  L  G  A  D  H  E  F  C  D  K  L  W  C  R  F  D  P  S  T   : G  K  T  T  N  L  D  P  D  T  S  I  E  V  P  E  D  R  Y  G  L  Y  A  I  D  N  L  D  P  D  M  :  I  I  G  S  D  C  V  Y  Y  Y  H  D  M  I  V  E  M  L  S  W  G  Y  Q  E  G  K  T  L  F  G  F  G  Y  D  F  R  Q  S  N  R :   L  Q  E  T  M  E  C  F  A  Q  K  L  E  S  I  H  T  A  S  G  G  K  K  I  N  I  I  S  H  S  M  G  G  L  L  V  K  C  F  M  A  L  H  S  D  :  I  F  E  K  Y  V  K  N  W  I  A  I  A  A  P  F  Q   : G  A  P  G  Y  I  T  S  S  L  L  N  G  T  S  F  V  H  G  W  E  E  R  F  F  I  S  K  W  S  M  H  Q  L  :  L  I  E  C  P  S  I  Y  E  L  M  G  C  P  D  F  H  W  E  H  A  P  V  L  E  I  W  K  E  K  S  N  S  N  G  E  S  S  V  V  L  E  S  Y  S  P  L  E  A  V  S  V  Y  E  L  A  L  A  N  N  K  :  V  T  Y  N  G  E  K  I  S  L  P  F  N  L  E  L  L  K  W  A  N  K  T  R  E  I  L  C  H  A  K  V  P  D  K  V  K  F  Y  N  I  Y  G  T  N  Y  E  T  P  H  S  V  C :   Y  G  S  Q  N  A  P  I  S  D  L  Q  Q  L  P  F  V  Q  :  S  N  Y  I  S  V  D  G  D  G  T  V  P  T  E  S  A  K  :  A  D  G  L  K  A  E  A  R  V  G  V  P  G  D  H  R  G  I  V  C  D  R  H  V  F  R  V  I  K  H  W  L  R  A  D  H  D  P  Y  Y  N  P  I  N  D  Y  V  I  L  P  T  S  F  D  I  E  R  H  H  E  K  G  L  D  V  T  S  L  R  E  E  W  E  I  V  S  E  S  Q  D  G  K  E  N  A  D  S  G  K  T  K  V  G  S  I  S  V  S  H  V  G  D  D  N  T  T  W  E  E  A  H  A  T  L  I  V  H  P  K  S  E  G  K  Q  H  V  E  L  N  A  M  S  V  S  A  R  A  *  N  L  Y  Y  H  M  V  K  G  A  L  L  F  Y  I  H  L  S  I  P  P  D  F  F  C  I  *  K  V  I  V  L  L  N  R  T  M  Y  V  C  I  Y  M  C  I  L  T  L  S  S  M  *  C  G  S  I  K  *  E  I  *  F  L  V   : Q  A  K  :  N  *  K  *  K  N  N  N  N  N  N  N  T  H  T  G  G  R  </second_frame>
            <third_frame>   S  V  I  C  N  L  T  L  G  E  W  R  C  *  *  R  S  *  L  S  Q  *  R  C  G  *  S  *  S  R  S  L  R  S  T  L  T  R  H  L  I  Q  F  Y  *  F  R  V  L  P  G  R  F  S  T  L  L  I  R  K  Q  V  G  P  N  G  F  G  S  E  Y  L  V  P  I  M  S  F  V  I  S  Y  G  V  V  L  T  L  L  P  :  V  K  L  P  I  *  T  L  T  Q  A  L  R  S  R  R  T  D  M  D  C  M  L  L  I  I  W  I  L  T  * :   L  L  G  L  I  V  Y  I  I  T  M  I  *  *  L  R  C  S  A  G  V  T  K  K  E  K  H  Y  L  D  L  A  M  I  S  G  R  A  T   : G  F  R  K  Q  W  S  V  L  R  K  S  *  N  P  Y  I  L  R  Q  E  A  R  R  *  T  L  *  V  I  L  W  V  V  F  W  L  N  V  S  W  L  S  T  V  I :   F  L  K  N  M  *  R  I  G  L  Q  *  L  H  H  S  K  :  V  L  L  D  I  L  P  L  H  Y  *  T  E  H  H  L  C  M  D  G  K  R  G  F  S  Y  P  N  G  V  C  I  N  C :   *  S  S  V  R  Q  Y  M  N  *  W  G  V  L  I  S  T  G  S  M  H  Q  F  *  K  F  G  R  K  N  L  T  V  M  E  S  P  P  L  Y  S  S  L  T  L  H  W  K  L  Y  Q  C  M  S  *  L  L  Q  T  T  R :   L  L  I  M  E  K  K  F  L  C  R  S  I  W  N  S  *  N  G  L  I  R  P  E  R  Y  C  A  M  Q  R  F  L  I  K  L  S  S  T  T  S  M  G  P  I  M  R  R  L  I  V  S   : V  M  E  V  R  M  H  P  F  L  I  F  N  N  Y  H  L  S  S :   L  T  T  Y  R  L  M  E  M  V  Q  F  Q  Q  N  L  Q  R :   L  M  G  L  K  Q  K  L  G  L  E  S  L  G  I  T  E  E  S  S  V  T  A  T  C  L  E  *  S  S  T  G  C  E  Q  I  M  I  L  I  T  I  Q  S  T  I  T  L  S  Y  P  L  H  L  T  S  K  G  T  M  R  K  V  W  M  *  L  L  S  E  R  S  G  K  L  F  Q  K  A  R  M  A  K  R  M  R  I  A  E  R  Q  R  W  V  L  Y  L  S  L  M  L  E  M  T  I  L  R  G  K  K  P  M  R  L  L  L  S  T  L  K  V  K  V  S  N  M  *  S  *  M  P  C  L  F  L  Q  G  L  E  T  Y  I  T  I  W  S  K  G  L  Y  C  F  I  S  I  C  L  F  L  L  I  S  S  V  Y  R  K  *  L  C  S  *  T  E  P  C  M  Y  V  Y  I  C  A  Y  *  R  Y  Q  V  C  D  V  D  Q  S  N  K  K  F  D  F  L  F  :  K  L  R :   I  K  S  E  R  I  I  I  T  I  I  I  L  I  L  V  G  G </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02HBa0320M09.4" strand="-"/>
                <serials PGL_serial="10" AGS_serial="2" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="119893" stop="119623"/>
                    <exon start="119442" stop="119351"/>
                    <exon start="116812" stop="116694"/>
                    <exon start="116348" stop="116213"/>
                    <exon start="116059" stop="116008"/>
                    <exon start="114714" stop="114614"/>
                    <exon start="114065" stop="113883"/>
                    <exon start="113647" stop="113490"/>
                    <exon start="113379" stop="113325"/>
                    <exon start="113205" stop="113152"/>
                    <exon start="112193" stop="111777"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>1635</number_coding_nucleotides>
                  <number_encoded_amino_acids>545</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>FCNLQFDVRGMAMLIEELIKSIEMWLKLIKKPQEYIDPTLDPVLLVPGVAGSILNAVDKKTGRTERVWVRILGADHEFCDKLWCRFDPSTGKTTNLDPDTSIEVPEDRYGLYAIDNLDPDMIIGSDCVYYYHDMIVEMLSWGYQEGKTLFGFGYDFRQSNRLQETMECFAQKLESIHTASGGKKINIISHSMGGLLVKCFMALHSDIFEKYVKNWIAIAAPFQGAPGYITSSLLNGTSFVHGWEERFFISKWSMHQLLIECPSIYELMGCPDFHWEHAPVLEIWKEKSNSNGESSVVLESYSPLEAVSVYELALANNKVTYNGEKISLPFNLELLKWANKTREILCHAKVPDKVKFYNIYGTNYETPHSVCYGSQNAPISDLQQLPFVQSNYISVDGDGTVPTESAKADGLKAEARVGVPGDHRGIVCDRHVFRVIKHWLRADHDPYYNPINDYVILPTSFDIERHHEKGLDVTSLREEWEIVSESQDGKENADSGKTKVGSISVSHVGDDNTTWEEAHATLIVHPKSEGKQHVELNAMSVSARA*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="3">
          <exon_coordinates>
            <exon e_start="119894" e_stop="119623"/>
            <exon e_start="119442" e_stop="119351"/>
            <exon e_start="116812" e_stop="116694"/>
            <exon e_start="116348" e_stop="116213"/>
            <exon e_start="116059" e_stop="116008"/>
            <exon e_start="114714" e_stop="114614"/>
            <exon e_start="114065" e_stop="113883"/>
            <exon e_start="113647" e_stop="113490"/>
            <exon e_start="113379" e_stop="113325"/>
            <exon e_start="113205" e_stop="113152"/>
            <exon e_start="112193" e_stop="111588"/>
            <exon e_start="108994" e_stop="108984"/>
            <exon e_start="107388" e_stop="107375"/>
            <exon e_start="107131" e_stop="107053"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.977" acc_prob="1.000" e_score="1.000"/>
          <exon-intron don_prob="0.991" acc_prob="0.900" e_score="1.000"/>
          <exon-intron don_prob="0.984" acc_prob="0.986" e_score="1.000"/>
          <exon-intron don_prob="0.937" acc_prob="0.999" e_score="1.000"/>
          <exon-intron don_prob="0.986" acc_prob="0.942" e_score="1.000"/>
          <exon-intron don_prob="0.942" acc_prob="0.971" e_score="1.000"/>
          <exon-intron don_prob="0.993" acc_prob="0.996" e_score="1.000"/>
          <exon-intron don_prob="0.983" acc_prob="0.997" e_score="1.000"/>
          <exon-intron don_prob="0.975" acc_prob="0.996" e_score="1.000"/>
          <exon-intron don_prob="0.997" acc_prob="0.996" e_score="1.000"/>
          <exon-intron don_prob="0.000" acc_prob="0.367" e_score="0.998"/>
          <exon-intron don_prob="0.615" acc_prob="0.000" e_score="0.818"/>
          <exon-intron don_prob="0.203" acc_prob="0.443" e_score="0.786"/>
          <exon-only e_score="0.506"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="119894" e_stop="119623" e_length="272"/>
          </exon>
          <intron i_serial="1" don_prob="0.977" acc_prob="1.000">
            <gDNA_intron_boundary i_start="119622" i_stop="119443" i_length="180"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="119442" e_stop="119351" e_length="92"/>
          </exon>
          <intron i_serial="2" don_prob="0.991" acc_prob="0.900">
            <gDNA_intron_boundary i_start="119350" i_stop="116813" i_length="2538"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="116812" e_stop="116694" e_length="119"/>
          </exon>
          <intron i_serial="3" don_prob="0.984" acc_prob="0.986">
            <gDNA_intron_boundary i_start="116693" i_stop="116349" i_length="345"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="116348" e_stop="116213" e_length="136"/>
          </exon>
          <intron i_serial="4" don_prob="0.937" acc_prob="0.999">
            <gDNA_intron_boundary i_start="116212" i_stop="116060" i_length="153"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="116059" e_stop="116008" e_length="52"/>
          </exon>
          <intron i_serial="5" don_prob="0.986" acc_prob="0.942">
            <gDNA_intron_boundary i_start="116007" i_stop="114715" i_length="1293"/>
          </intron>
          <exon e_serial="6" e_score="1.000">
            <gDNA_exon_boundary e_start="114714" e_stop="114614" e_length="101"/>
          </exon>
          <intron i_serial="6" don_prob="0.942" acc_prob="0.971">
            <gDNA_intron_boundary i_start="114613" i_stop="114066" i_length="548"/>
          </intron>
          <exon e_serial="7" e_score="1.000">
            <gDNA_exon_boundary e_start="114065" e_stop="113883" e_length="183"/>
          </exon>
          <intron i_serial="7" don_prob="0.993" acc_prob="0.996">
            <gDNA_intron_boundary i_start="113882" i_stop="113648" i_length="235"/>
          </intron>
          <exon e_serial="8" e_score="1.000">
            <gDNA_exon_boundary e_start="113647" e_stop="113490" e_length="158"/>
          </exon>
          <intron i_serial="8" don_prob="0.983" acc_prob="0.997">
            <gDNA_intron_boundary i_start="113489" i_stop="113380" i_length="110"/>
          </intron>
          <exon e_serial="9" e_score="1.000">
            <gDNA_exon_boundary e_start="113379" e_stop="113325" e_length="55"/>
          </exon>
          <intron i_serial="9" don_prob="0.975" acc_prob="0.996">
            <gDNA_intron_boundary i_start="113324" i_stop="113206" i_length="119"/>
          </intron>
          <exon e_serial="10" e_score="1.000">
            <gDNA_exon_boundary e_start="113205" e_stop="113152" e_length="54"/>
          </exon>
          <intron i_serial="10" don_prob="0.997" acc_prob="0.996">
            <gDNA_intron_boundary i_start="113151" i_stop="112194" i_length="958"/>
          </intron>
          <exon e_serial="11" e_score="0.998">
            <gDNA_exon_boundary e_start="112193" e_stop="111588" e_length="606"/>
          </exon>
          <intron i_serial="11" don_prob="0.000" acc_prob="0.367">
            <gDNA_intron_boundary i_start="111587" i_stop="108995" i_length="2593"/>
          </intron>
          <exon e_serial="12" e_score="0.818">
            <gDNA_exon_boundary e_start="108994" e_stop="108984" e_length="11"/>
          </exon>
          <intron i_serial="12" don_prob="0.615" acc_prob="0.000">
            <gDNA_intron_boundary i_start="108983" i_stop="107389" i_length="1595"/>
          </intron>
          <exon e_serial="13" e_score="0.786">
            <gDNA_exon_boundary e_start="107388" e_stop="107375" e_length="14"/>
          </exon>
          <intron i_serial="13" don_prob="0.203" acc_prob="0.443">
            <gDNA_intron_boundary i_start="107374" i_stop="107132" i_length="243"/>
          </intron>
          <exon e_serial="14" e_score="0.506">
            <gDNA_exon_boundary e_start="107131" e_stop="107053" e_length="79"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="119894" stop="119623"/>
              <exon start="119442" stop="119351"/>
              <exon start="116812" stop="116694"/>
              <exon start="116348" stop="116254"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E322997" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="119870" stop="119623"/>
              <exon start="119442" stop="119407"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E276637" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="119698" stop="119623"/>
              <exon start="119442" stop="119351"/>
              <exon start="116812" stop="116694"/>
              <exon start="116348" stop="116213"/>
              <exon start="116059" stop="116008"/>
              <exon start="114714" stop="114614"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E212792" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="119392" stop="119351"/>
              <exon start="116812" stop="116694"/>
              <exon start="116348" stop="116213"/>
              <exon start="116059" stop="116008"/>
              <exon start="114714" stop="114614"/>
              <exon start="114065" stop="113973"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E269598" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="116802" stop="116694"/>
              <exon start="116348" stop="116213"/>
              <exon start="116059" stop="116008"/>
              <exon start="114714" stop="114614"/>
              <exon start="114065" stop="113893"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E241402" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="116712" stop="116694"/>
              <exon start="116348" stop="116213"/>
              <exon start="116059" stop="116008"/>
              <exon start="114714" stop="114614"/>
              <exon start="114065" stop="113883"/>
              <exon start="113647" stop="113543"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E340807" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="116309" stop="116213"/>
              <exon start="116059" stop="116008"/>
              <exon start="114714" stop="114614"/>
              <exon start="114065" stop="113883"/>
              <exon start="113647" stop="113490"/>
              <exon start="113379" stop="113325"/>
              <exon start="113205" stop="113199"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E213857" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="116029" stop="116008"/>
              <exon start="114714" stop="114614"/>
              <exon start="114065" stop="113883"/>
              <exon start="113647" stop="113490"/>
              <exon start="113379" stop="113325"/>
              <exon start="113205" stop="113152"/>
              <exon start="112193" stop="111994"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E699605" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="114699" stop="114614"/>
              <exon start="114065" stop="113883"/>
              <exon start="113647" stop="113490"/>
              <exon start="113379" stop="113325"/>
              <exon start="113205" stop="113152"/>
              <exon start="112193" stop="112155"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E327971" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="114699" stop="114614"/>
              <exon start="114065" stop="113883"/>
              <exon start="113647" stop="113490"/>
              <exon start="113379" stop="113325"/>
              <exon start="113205" stop="113152"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E328400" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="112013" stop="111588"/>
              <exon start="108994" stop="108984"/>
              <exon start="107388" stop="107375"/>
              <exon start="107131" stop="107053"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E712159" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="10" AGS_serial="3" gDNA_strand="-"/>
          <translation>
            <gDNA_template>TTTCTGTAATCTGCAATTTGACGTTAGGGGAATGGCGATGTTAATAGAGGAGCTGATTAAGTCAATAGAGATGTGGCTGAAGCTGATCAAGAAGCCTCAGGAGTACATTGACCCGACACTTGATCCAGTTCTATTAGTTCCGGGTGTTGCCGGGTCGATTCTCAACGCTGTTGATAAGAAAACAGGTCGGACCGAACGGGTTTGGGTCCGAATACTTGGTGCCGATCATGAGTTTTGTGATAAGTTATGGTGTCGTTTTGACCCTTCTACCG : GTAAAACTACCAATTTAGACCCTGACACAAGCATTGAGGTCCCGGAGGACAGATATGGACTGTATGCTATTGATAATTTGGATCCTGACATG : ATTATTGGGTCTGATTGTGTATATTATTACCATGATATGATAGTTGAGATGCTCAGCTGGGGTTACCAAGAAGGAAAAACACTATTTGGATTTGGCTATGATTTCCGGCAGAGCAACAG : GCTTCAGGAAACAATGGAGTGTTTTGCGCAAAAGCTAGAATCCATACATACTGCGTCAGGAGGCAAGAAGATAAACATTATAAGTCATTCTATGGGTGGTCTTCTGGTTAAATGTTTCATGGCTCTCCACAGTGAT : ATTTTTGAAAAATATGTGAAGAATTGGATTGCAATAGCTGCACCATTCCAAG : GTGCTCCTGGATATATTACCTCTTCATTATTGAACGGAACATCATTTGTGCATGGATGGGAAGAGAGGTTTTTCATATCCAAATGGAGTATGCATCAACTG : TTGATCGAGTGTCCGTCAATATATGAATTAATGGGGTGTCCTGATTTCCACTGGGAGCATGCACCAGTTCTAGAAATTTGGAAGGAAAAATCTAACAGTAATGGAGAGTCCTCCGTTGTACTCGAGTCTTACTCTCCACTGGAAGCTGTATCAGTGTATGAGTTAGCTCTTGCAAACAACAAG : GTTACTTATAATGGAGAAAAAATTTCTCTGCCGTTCAATCTGGAACTCTTGAAATGGGCTAATAAGACCCGAGAGATATTGTGCCATGCAAAGGTTCCTGATAAAGTTAAGTTCTACAACATCTATGGGACCAATTATGAGACGCCTCATAGTGTCTG : TTATGGAAGTCAGAATGCACCCATTTCTGATCTTCAACAATTACCATTTGTCCAG : TCTAACTACATATCGGTTGATGGAGATGGTACAGTTCCAACAGAATCTGCAAAG : GCTGATGGGCTTAAAGCAGAAGCTAGGGTTGGAGTCCCTGGGGATCACAGAGGAATCGTCTGTGACCGCCACGTGTTTAGAGTGATCAAGCACTGGTTGCGAGCAGATCATGATCCTTATTACAATCCAATCAACGATTACGTTATCCTACCCACTTCATTTGACATCGAAAGGCACCATGAGAAAGGTTTGGATGTAACTTCTCTCAGAGAGGAGTGGGAAATTGTTTCAGAAAGCCAGGATGGCAAAGAGAATGCGGATAGCGGAAAGACAAAGGTGGGTTCTATATCTGTCTCTCATGTTGGAGATGACAATACTACGTGGGAAGAAGCCCATGCGACTCTTATTGTCCACCCTAAAAGTGAAGGTAAGCAACATGTAGAGTTGAATGCCATGTCTGTTTCTGCAAGGGCTTGAAACTTATATTACCATATGGTCAAAGGGGCTTTATTGTTTTATATCCATCTGTCTATTCCTCCTGATTTCTTCTGTATATAGAAAGTAATTGTGCTCCTGAACAGAACCATGTATGTATGTATATATATGTGCATATTAACGTTATCAAGTATGTGATGTGGATCAATCAAATAAGAAATTTGATTTCTT : GATCAAGAAAA : AAAAAAAGAAAGAG : ATAAGAAAAGTACAAACAAAGAAACAAACAAAAGGTGGGAAAATGGGGTTCTCTTGCTGACAGACATGGAAAACTTGAA</gDNA_template>
            <first_frame> F  L  *  S  A  I  *  R  *  G  N  G  D  V  N  R  G  A  D  *  V  N  R  D  V  A  E  A  D  Q  E  A  S  G  V  H  *  P  D  T  *  S  S  S  I  S  S  G  C  C  R  V  D  S  Q  R  C  *  *  E  N  R  S  D  R  T  G  L  G  P  N  T  W  C  R  S  *  V  L  *  *  V  M  V  S  F  *  P  F  Y  R :   *  N  Y  Q  F  R  P  *  H  K  H  *  G  P  G  G  Q  I  W  T  V  C  Y  *  *  F  G  S  *  H   : D  Y  W  V  *  L  C  I  L  L  P  *  Y  D  S  *  D  A  Q  L  G  L  P  R  R  K  N  T  I  W  I  W  L  *  F  P  A  E  Q  Q  :  A  S  G  N  N  G  V  F  C  A  K  A  R  I  H  T  Y  C  V  R  R  Q  E  D  K  H  Y  K  S  F  Y  G  W  S  S  G  *  M  F  H  G  S  P  Q  *   : Y  F  *  K  I  C  E  E  L  D  C  N  S  C  T  I  P  R :   C  S  W  I  Y  Y  L  F  I  I  E  R  N  I  I  C  A  W  M  G  R  E  V  F  H  I  Q  M  E  Y  A  S  T   : V  D  R  V  S  V  N  I  *  I  N  G  V  S  *  F  P  L  G  A  C  T  S  S  R  N  L  E  G  K  I  *  Q  *  W  R  V  L  R  C  T  R  V  L  L  S  T  G  S  C  I  S  V  *  V  S  S  C  K  Q  Q   : G  Y  L  *  W  R  K  N  F  S  A  V  Q  S  G  T  L  E  M  G  *  *  D  P  R  D  I  V  P  C  K  G  S  *  *  S  *  V  L  Q  H  L  W  D  Q  L  *  D  A  S  *  C  L  :  L  W  K  S  E  C  T  H  F  *  S  S  T  I  T  I  C  P   : V  *  L  H  I  G  *  W  R  W  Y  S  S  N  R  I  C  K   : G  *  W  A  *  S  R  S  *  G  W  S  P  W  G  S  Q  R  N  R  L  *  P  P  R  V  *  S  D  Q  A  L  V  A  S  R  S  *  S  L  L  Q  S  N  Q  R  L  R  Y  P  T  H  F  I  *  H  R  K  A  P  *  E  R  F  G  C  N  F  S  Q  R  G  V  G  N  C  F  R  K  P  G  W  Q  R  E  C  G  *  R  K  D  K  G  G  F  Y  I  C  L  S  C  W  R  *  Q  Y  Y  V  G  R  S  P  C  D  S  Y  C  P  P  *  K  *  R  *  A  T  C  R  V  E  C  H  V  C  F  C  K  G  L  K  L  I  L  P  Y  G  Q  R  G  F  I  V  L  Y  P  S  V  Y  S  S  *  F  L  L  Y  I  E  S  N  C  A  P  E  Q  N  H  V  C  M  Y  I  Y  V  H  I  N  V  I  K  Y  V  M  W  I  N  Q  I  R  N  L  I  S   : *  S  R  K  :  K  K  R  K  R :   *  E  K  Y  K  Q  R  N  K  Q  K  V  G  K  W  G  S  L  A  D  R  H  G  K  L  E </first_frame>
            <second_frame>  F  C  N  L  Q  F  D  V  R  G  M  A  M  L  I  E  E  L  I  K  S  I  E  M  W  L  K  L  I  K  K  P  Q  E  Y  I  D  P  T  L  D  P  V  L  L  V  P  G  V  A  G  S  I  L  N  A  V  D  K  K  T  G  R  T  E  R  V  W  V  R  I  L  G  A  D  H  E  F  C  D  K  L  W  C  R  F  D  P  S  T   : G  K  T  T  N  L  D  P  D  T  S  I  E  V  P  E  D  R  Y  G  L  Y  A  I  D  N  L  D  P  D  M  :  I  I  G  S  D  C  V  Y  Y  Y  H  D  M  I  V  E  M  L  S  W  G  Y  Q  E  G  K  T  L  F  G  F  G  Y  D  F  R  Q  S  N  R :   L  Q  E  T  M  E  C  F  A  Q  K  L  E  S  I  H  T  A  S  G  G  K  K  I  N  I  I  S  H  S  M  G  G  L  L  V  K  C  F  M  A  L  H  S  D  :  I  F  E  K  Y  V  K  N  W  I  A  I  A  A  P  F  Q   : G  A  P  G  Y  I  T  S  S  L  L  N  G  T  S  F  V  H  G  W  E  E  R  F  F  I  S  K  W  S  M  H  Q  L  :  L  I  E  C  P  S  I  Y  E  L  M  G  C  P  D  F  H  W  E  H  A  P  V  L  E  I  W  K  E  K  S  N  S  N  G  E  S  S  V  V  L  E  S  Y  S  P  L  E  A  V  S  V  Y  E  L  A  L  A  N  N  K  :  V  T  Y  N  G  E  K  I  S  L  P  F  N  L  E  L  L  K  W  A  N  K  T  R  E  I  L  C  H  A  K  V  P  D  K  V  K  F  Y  N  I  Y  G  T  N  Y  E  T  P  H  S  V  C :   Y  G  S  Q  N  A  P  I  S  D  L  Q  Q  L  P  F  V  Q  :  S  N  Y  I  S  V  D  G  D  G  T  V  P  T  E  S  A  K  :  A  D  G  L  K  A  E  A  R  V  G  V  P  G  D  H  R  G  I  V  C  D  R  H  V  F  R  V  I  K  H  W  L  R  A  D  H  D  P  Y  Y  N  P  I  N  D  Y  V  I  L  P  T  S  F  D  I  E  R  H  H  E  K  G  L  D  V  T  S  L  R  E  E  W  E  I  V  S  E  S  Q  D  G  K  E  N  A  D  S  G  K  T  K  V  G  S  I  S  V  S  H  V  G  D  D  N  T  T  W  E  E  A  H  A  T  L  I  V  H  P  K  S  E  G  K  Q  H  V  E  L  N  A  M  S  V  S  A  R  A  *  N  L  Y  Y  H  M  V  K  G  A  L  L  F  Y  I  H  L  S  I  P  P  D  F  F  C  I  *  K  V  I  V  L  L  N  R  T  M  Y  V  C  I  Y  M  C  I  L  T  L  S  S  M  *  C  G  S  I  K  *  E  I  *  F  L  :  D  Q  E  K :   K  K  E  R   : D  K  K  S  T  N  K  E  T  N  K  R  W  E  N  G  V  L  L  L  T  D  M  E  N  L   </second_frame>
            <third_frame>   S  V  I  C  N  L  T  L  G  E  W  R  C  *  *  R  S  *  L  S  Q  *  R  C  G  *  S  *  S  R  S  L  R  S  T  L  T  R  H  L  I  Q  F  Y  *  F  R  V  L  P  G  R  F  S  T  L  L  I  R  K  Q  V  G  P  N  G  F  G  S  E  Y  L  V  P  I  M  S  F  V  I  S  Y  G  V  V  L  T  L  L  P  :  V  K  L  P  I  *  T  L  T  Q  A  L  R  S  R  R  T  D  M  D  C  M  L  L  I  I  W  I  L  T  * :   L  L  G  L  I  V  Y  I  I  T  M  I  *  *  L  R  C  S  A  G  V  T  K  K  E  K  H  Y  L  D  L  A  M  I  S  G  R  A  T   : G  F  R  K  Q  W  S  V  L  R  K  S  *  N  P  Y  I  L  R  Q  E  A  R  R  *  T  L  *  V  I  L  W  V  V  F  W  L  N  V  S  W  L  S  T  V  I :   F  L  K  N  M  *  R  I  G  L  Q  *  L  H  H  S  K  :  V  L  L  D  I  L  P  L  H  Y  *  T  E  H  H  L  C  M  D  G  K  R  G  F  S  Y  P  N  G  V  C  I  N  C :   *  S  S  V  R  Q  Y  M  N  *  W  G  V  L  I  S  T  G  S  M  H  Q  F  *  K  F  G  R  K  N  L  T  V  M  E  S  P  P  L  Y  S  S  L  T  L  H  W  K  L  Y  Q  C  M  S  *  L  L  Q  T  T  R :   L  L  I  M  E  K  K  F  L  C  R  S  I  W  N  S  *  N  G  L  I  R  P  E  R  Y  C  A  M  Q  R  F  L  I  K  L  S  S  T  T  S  M  G  P  I  M  R  R  L  I  V  S   : V  M  E  V  R  M  H  P  F  L  I  F  N  N  Y  H  L  S  S :   L  T  T  Y  R  L  M  E  M  V  Q  F  Q  Q  N  L  Q  R :   L  M  G  L  K  Q  K  L  G  L  E  S  L  G  I  T  E  E  S  S  V  T  A  T  C  L  E  *  S  S  T  G  C  E  Q  I  M  I  L  I  T  I  Q  S  T  I  T  L  S  Y  P  L  H  L  T  S  K  G  T  M  R  K  V  W  M  *  L  L  S  E  R  S  G  K  L  F  Q  K  A  R  M  A  K  R  M  R  I  A  E  R  Q  R  W  V  L  Y  L  S  L  M  L  E  M  T  I  L  R  G  K  K  P  M  R  L  L  L  S  T  L  K  V  K  V  S  N  M  *  S  *  M  P  C  L  F  L  Q  G  L  E  T  Y  I  T  I  W  S  K  G  L  Y  C  F  I  S  I  C  L  F  L  L  I  S  S  V  Y  R  K  *  L  C  S  *  T  E  P  C  M  Y  V  Y  I  C  A  Y  *  R  Y  Q  V  C  D  V  D  Q  S  N  K  K  F  D  F  L :   I  K  K   : K  K  K  K  E  :  I  R  K  V  Q  T  K  K  Q  T  K  G  G  K  M  G  F  S  C  *  Q  T  W  K  T  *  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02HBa0320M09.4" strand="-"/>
                <serials PGL_serial="10" AGS_serial="3" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="119893" stop="119623"/>
                    <exon start="119442" stop="119351"/>
                    <exon start="116812" stop="116694"/>
                    <exon start="116348" stop="116213"/>
                    <exon start="116059" stop="116008"/>
                    <exon start="114714" stop="114614"/>
                    <exon start="114065" stop="113883"/>
                    <exon start="113647" stop="113490"/>
                    <exon start="113379" stop="113325"/>
                    <exon start="113205" stop="113152"/>
                    <exon start="112193" stop="111777"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>1635</number_coding_nucleotides>
                  <number_encoded_amino_acids>545</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>FCNLQFDVRGMAMLIEELIKSIEMWLKLIKKPQEYIDPTLDPVLLVPGVAGSILNAVDKKTGRTERVWVRILGADHEFCDKLWCRFDPSTGKTTNLDPDTSIEVPEDRYGLYAIDNLDPDMIIGSDCVYYYHDMIVEMLSWGYQEGKTLFGFGYDFRQSNRLQETMECFAQKLESIHTASGGKKINIISHSMGGLLVKCFMALHSDIFEKYVKNWIAIAAPFQGAPGYITSSLLNGTSFVHGWEERFFISKWSMHQLLIECPSIYELMGCPDFHWEHAPVLEIWKEKSNSNGESSVVLESYSPLEAVSVYELALANNKVTYNGEKISLPFNLELLKWANKTREILCHAKVPDKVKFYNIYGTNYETPHSVCYGSQNAPISDLQQLPFVQSNYISVDGDGTVPTESAKADGLKAEARVGVPGDHRGIVCDRHVFRVIKHWLRADHDPYYNPINDYVILPTSFDIERHHEKGLDVTSLREEWEIVSESQDGKENADSGKTKVGSISVSHVGDDNTTWEEAHATLIVHPKSEGKQHVELNAMSVSARA*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="4">
          <exon_coordinates>
            <exon e_start="111936" e_stop="111588"/>
            <exon e_start="108994" e_stop="108984"/>
            <exon e_start="107131" e_stop="107102"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.000" acc_prob="0.367" e_score="0.977"/>
          <exon-intron don_prob="0.615" acc_prob="0.443" e_score="0.727"/>
          <exon-only e_score="0.700"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.977">
            <gDNA_exon_boundary e_start="111936" e_stop="111588" e_length="349"/>
          </exon>
          <intron i_serial="1" don_prob="0.000" acc_prob="0.367">
            <gDNA_intron_boundary i_start="111587" i_stop="108995" i_length="2593"/>
          </intron>
          <exon e_serial="2" e_score="0.727">
            <gDNA_exon_boundary e_start="108994" e_stop="108984" e_length="11"/>
          </exon>
          <intron i_serial="2" don_prob="0.615" acc_prob="0.443">
            <gDNA_intron_boundary i_start="108983" i_stop="107132" i_length="1852"/>
          </intron>
          <exon e_serial="3" e_score="0.700">
            <gDNA_exon_boundary e_start="107131" e_stop="107102" e_length="30"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="111936" stop="111588"/>
              <exon start="108994" stop="108984"/>
              <exon start="107131" stop="107102"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E218848" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="10" AGS_serial="4" gDNA_strand="-"/>
          <translation>
            <gDNA_template>GGATAGCGGAAAGACAAAGGTGGGTTCTATATCTGTCTCTCATGTTGGAGATGACAATACTACGTGGGAAGAAGCCCATGCGACTCTTATTGTCCACCCTAAAAGTGAAGGTAAGCAACATGTAGAGTTGAATGCCATGTCTGTTTCTGCAAGGGCTTGAAACTTATATTACCATATGGTCAAAGGGGCTTTATTGTTTTATATCCATCTGTCTATTCCTCCTGATTTCTTCTGTATATAGAAAGTAATTGTGCTCCTGAACAGAACCATGTATGTATGTATATATATGTGCATATTAACGTTATCAAGTATGTGATGTGGATCAATCAAATAAGAAATTTGATTTCTT : GATCAAGAAAA : ATAAGAAAAGTACAAACAAAGAAACAAACA</gDNA_template>
            <first_frame> G  *  R  K  D  K  G  G  F  Y  I  C  L  S  C  W  R  *  Q  Y  Y  V  G  R  S  P  C  D  S  Y  C  P  P  *  K  *  R  *  A  T  C  R  V  E  C  H  V  C  F  C  K  G  L  K  L  I  L  P  Y  G  Q  R  G  F  I  V  L  Y  P  S  V  Y  S  S  *  F  L  L  Y  I  E  S  N  C  A  P  E  Q  N  H  V  C  M  Y  I  Y  V  H  I  N  V  I  K  Y  V  M  W  I  N  Q  I  R  N  L  I  S   : *  S  R  K  :  I  R  K  V  Q  T  K  K  Q  T </first_frame>
            <second_frame>  D  S  G  K  T  K  V  G  S  I  S  V  S  H  V  G  D  D  N  T  T  W  E  E  A  H  A  T  L  I  V  H  P  K  S  E  G  K  Q  H  V  E  L  N  A  M  S  V  S  A  R  A  *  N  L  Y  Y  H  M  V  K  G  A  L  L  F  Y  I  H  L  S  I  P  P  D  F  F  C  I  *  K  V  I  V  L  L  N  R  T  M  Y  V  C  I  Y  M  C  I  L  T  L  S  S  M  *  C  G  S  I  K  *  E  I  *  F  L  :  D  Q  E  K :   *  E  K  Y  K  Q  R  N  K   </second_frame>
            <third_frame>   I  A  E  R  Q  R  W  V  L  Y  L  S  L  M  L  E  M  T  I  L  R  G  K  K  P  M  R  L  L  L  S  T  L  K  V  K  V  S  N  M  *  S  *  M  P  C  L  F  L  Q  G  L  E  T  Y  I  T  I  W  S  K  G  L  Y  C  F  I  S  I  C  L  F  L  L  I  S  S  V  Y  R  K  *  L  C  S  *  T  E  P  C  M  Y  V  Y  I  C  A  Y  *  R  Y  Q  V  C  D  V  D  Q  S  N  K  K  F  D  F  L :   I  K  K   : N  K  K  S  T  N  K  E  T  N  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <none gDNA_id="C02HBa0320M09.4"/>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
  </PGL_module>
</GTH_output>
<!--
$ general statistics:
$ 96 chains have been computed
$ 
$ memory statistics:
$ 1322280 bytes spliced alignments in total
$ 79 spliced alignments have been stored
$ 16737 bytes was the average size of a spliced alignment
$ 20096 bytes predicted gene locations in total
$ 10 predicted gene locations have been stored
$ 2009 bytes was the average size of a predicted gene location
$ 4 megabytes was the average size of the backtrace matrix
$ 106 backtrace matrices have been allocated
$ 
$ date finished: 2009-12-01 10:25:34
-->
