<?xml version="1.0" encoding="ISO-8859-1"?>
<GTH_output xmlns="http://www.genomethreader.org/GTH_output/" GTH_XML_version="1.1">
  <header xmlns="http://www.genomethreader.org/GTH_output/header/">
    <source program="GenomeThreader" version="0.9.54" build_date="2006-07-28 11:55:15" run_date="2009-12-01 10:23:48"/>
    <gDNA_template_files>
      <temp_name>/tmp/bac-submission-temp-C02HBa0323A14-r86Tr/GenomeThreader_SGN_E_tomato/un_xed_seqs</temp_name>
    </gDNA_template_files>
    <reference_files>
      <file ref_name="/tmp/bac-submission-temp-C02HBa0323A14-r86Tr/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" type="ESTcDNA"/>
    </reference_files>
    <splice_site_parameters parameter_type="Bayesian" species="arabidopsis"/>
    <parameters>
      <parameter name="bssmfile" value="arabidopsis"/>
      <parameter name="scorematrixfile" value="BLOSUM62"/>
      <parameter name="searchmode" value="forward=True,reverse=True)"/>
      <parameter name="translationtable" value="1"/>
      <parameter name="frompos" value="0"/>
      <parameter name="topos" value="0"/>
      <parameter name="width" value="0"/>
      <parameter name="verbose" value="False"/>
      <parameter name="skipalignmentout" value="False"/>
      <parameter name="showintronmaxlen" value="120"/>
      <parameter name="minorflen" value="64"/>
      <parameter name="showseqnums" value="False"/>
      <parameter name="gs2out" value="False"/>
      <parameter name="maskpolyatails" value="False"/>
      <parameter name="noautoindex" value="False"/>
      <parameter name="minmatchlen" value="20"/>
      <parameter name="seedlength" value="16"/>
      <parameter name="exdrop" value="2"/>
      <parameter name="online" value="False"/>
      <parameter name="inverse" value="False"/>
      <parameter name="exact" value="False"/>
      <parameter name="chainwf" value="0.500000"/>
      <parameter name="gcmaxgapwidth" value="1000000"/>
      <parameter name="gcmincoverage" value="50"/>
      <parameter name="introncutout" value="False"/>
      <parameter name="autointroncutout" value="0"/>
      <parameter name="icinitialdelta" value="50"/>
      <parameter name="iciterations" value="2"/>
      <parameter name="icdeltaincrease" value="50"/>
      <parameter name="icminremintronlen" value="10"/>
      <parameter name="nou12intronmodel" value="False"/>
      <parameter name="u12donorprob" value="0.990000"/>
      <parameter name="u12donorprob1mism" value="0.900000"/>
      <parameter name="probies" value="0.500000"/>
      <parameter name="probdelgen" value="0.030000"/>
      <parameter name="identityweight" value="2.000000"/>
      <parameter name="mismatchweight" value="-2.000000"/>
      <parameter name="undetcharweight" value="0.000000"/>
      <parameter name="deletionweight" value="-4.000000"/>
      <parameter name="dpminexonlen" value="5"/>
      <parameter name="dpminintronlen" value="50"/>
      <parameter name="shortexonpenal" value="100"/>
      <parameter name="shortintronpenal" value="100"/>
      <parameter name="wzerotransition" value="80"/>
      <parameter name="wdecreasedoutput" value="80"/>
      <parameter name="leadcutoffsmode" value="RELAXED"/>
      <parameter name="termcutoffsmode" value="STRICT"/>
      <parameter name="cutoffsminexonlen" value="5"/>
      <parameter name="scoreminexonlen" value="50"/>
      <parameter name="minaveragessp" value="0.500000"/>
      <parameter name="minalignmentscore" value="0.900000"/>
      <parameter name="maxalignmentscore" value="1.000000"/>
      <parameter name="mincoverage" value="0.900000"/>
      <parameter name="maxcoverage" value="100.000000"/>
      <parameter name="intermediate" value="False"/>
      <parameter name="sortags" value="False"/>
      <parameter name="sortagswf" value="1.000000"/>
      <parameter name="first" value="0"/>
      <parameter name="exondistri" value="False"/>
      <parameter name="introndistri" value="False"/>
      <parameter name="refseqcovdistri" value="False"/>
    </parameters>
    <overall_reference_type>ESTcDNA</overall_reference_type>
  </header>
  <alignment_module>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0323A14-r86Tr/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E217990" ref_strand="+" ref_description="SGN-E217990 [cLEL-23-F4](-)">
      <seq>atgatcttcaatagaatctacagaatttgaaggtatattatcatctgcatgatcaaacatatccatttgtatgggagcagatgatacttcttctgtgataacatctttgaaaggaaatgaatcttccatgaatgtaatttccctgctcactgatatgacatgagtctccaaatccatgactttatatcctttttgtgtctctgagtacccaatgaagactgatcttgttgctcttggagcaaatttatctcttcttggcaaaactgatacaaaacataaacatccaaacaccctcaaatgttctagattaggtgctcgttcataaagaagttcatatggtgacttccttgtaatacagttgtaggcattctgtttatcagataagctgcagttttaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0323A14-r86Tr/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0323A14.3" temp_strand="+" temp_description="C02HBa0323A14.3  AC215439.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0323A14 sequenced_by:kribb upload_account_name:korea">
        <position start="4780" stop="5720"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="5003" g_stop="5430" g_length="428"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="412" r_length="412" r_score="0.928"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0323A14.3" gen_strand="+" ref_id="SGN-E217990" ref_strand="+">
        <total_alignment_score>0.928</total_alignment_score>
        <cumulative_length_of_scored_exons>428</cumulative_length_of_scored_exons>
        <coverage percentage="1.039" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0323A14.3" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E217990" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="5003" e_stop="5430"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATGATCTTCAATAGAATCTACAGGATTTGAAGGTATATTATCATCTGCATGATCAAACATATCCATTTGTATAGGAGCAGTATAATCTGTGGTTGATGATACTTCTTTTGTGATAACATCTTTGAAAGGAAATGAATCTTCCATGAATGTAACCTCCCTGCTCACTGATATGACATGAGTCTCCAAATCCATGACTTTATATCCTTTTTGTGTCTCTGAGTACCCAATGAAGACTGATCTTGTTGCTCTTGGAGCAAATTTATCTCTTCTTGGCAAAACTGATACAAAACATAAACATCCAAACACCCTCAAATGTTCTAGATTAGGTGCTCGTTTATAAAGAAGTTCATATGGTGACTTCCCTTGTAATACAGTTGTAGGCATTCTGTTTATCAGATAAGCTGCAGTTTTAACACAATTTCCCCAAA</genome_strand>
        <mrna_strand>ATGATCTTCAATAGAATCTACAGAATTTGAAGGTATATTATCATCTGCATGATCAAACATATCCATTTGTATGGGAGCAG-AT--------------GATACTTCTTCTGTGATAACATCTTTGAAAGGAAATGAATCTTCCATGAATGTAATTTCCCTGCTCACTGATATGACATGAGTCTCCAAATCCATGACTTTATATCCTTTTTGTGTCTCTGAGTACCCAATGAAGACTGATCTTGTTGCTCTTGGAGCAAATTTATCTCTTCTTGGCAAAACTGATACAAAACATAAACATCCAAACACCCTCAAATGTTCTAGATTAGGTGCTCGTTCATAAAGAAGTTCATATGGTGACTT-CCTTGTAATACAGTTGTAGGCATTCTGTTTATCAGATAAGCTGCAGTTTTAAAAAAAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0323A14-r86Tr/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E349461" ref_strand="+" ref_description="SGN-E349461 [cTOS-1-N16]">
      <seq>ggacctggtggatcgttcaatttgggatggttgtcaacacaatgaagcattgagatgtatacacttggcattgctttgtgttcaagatttggcggctcacagaccaaacatgtcttctgtggttctgatgctggaaactgacaatgtaaggttgcccttgcctaggcaacctacctatacttcaatgagaagatctgtggatgaagatatatggcatgggaatcaggatttaacatcttccaacaatgtcacagttagtgtactaataggtagatgattggttaatgcttgttccttcttacatacctgcttcatttgaagagaatgggatcaagtagtgtaactatgtaaagttatagttggaactatgttcataattttttgttagctaggtaaactttcgcacatcatgtgtattgtaattagaaggtggttcagctctgcaagctgaaagagagatatgtcacaaccttgttcaatcggtaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0323A14-r86Tr/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0323A14.3" temp_strand="+" temp_description="C02HBa0323A14.3  AC215439.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0323A14 sequenced_by:kribb upload_account_name:korea">
        <position start="21749" stop="22835"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="22049" g_stop="22530" g_length="482"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="482" r_length="482" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="485" polyA_stop="496"/>
      <MATCH_line gen_id="C02HBa0323A14.3" gen_strand="+" ref_id="SGN-E349461" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>482</cumulative_length_of_scored_exons>
        <coverage percentage="0.972" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0323A14.3" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E349461" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="22049" e_stop="22530"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGACCTGGTGGATCGTTCAATTTGGGATGGTTGTCAACACAATGAAGCATTGAGATGTATACACTTGGCATTGCTTTGTGTTCAAGATTTGGCGGCTCACAGACCAAACATGTCTTCTGTGGTTCTGATGCTGGAAACTGACAATGTAAGGTTGCCCTTGCCTAGGCAACCTACCTATACTTCAATGAGAAGATCTGTGGATGAAGATATATGGCATGGGAATCAGGATTTAACATCTTCCAACAATGTCACAGTTAGTGTACTAATAGGTAGATGATTGGTTAATGCTTGTTCCTTCTTACATACCTGCTTCATTTGAAGAGAATGGGATCAAGTAGTGTAACTATGTAAAGTTATAGTTGGAACTATGTTCATAATTTTTTGTTAGCTAGGTAAACTTTCGCACATCATGTGTATTGTAATTAGAAGGTGGTTCAGCTCTGCAAGCTGAAAGAGAGATATGTCACAACCTTGTTCAATCG</genome_strand>
        <mrna_strand>GGACCTGGTGGATCGTTCAATTTGGGATGGTTGTCAACACAATGAAGCATTGAGATGTATACACTTGGCATTGCTTTGTGTTCAAGATTTGGCGGCTCACAGACCAAACATGTCTTCTGTGGTTCTGATGCTGGAAACTGACAATGTAAGGTTGCCCTTGCCTAGGCAACCTACCTATACTTCAATGAGAAGATCTGTGGATGAAGATATATGGCATGGGAATCAGGATTTAACATCTTCCAACAATGTCACAGTTAGTGTACTAATAGGTAGATGATTGGTTAATGCTTGTTCCTTCTTACATACCTGCTTCATTTGAAGAGAATGGGATCAAGTAGTGTAACTATGTAAAGTTATAGTTGGAACTATGTTCATAATTTTTTGTTAGCTAGGTAAACTTTCGCACATCATGTGTATTGTAATTAGAAGGTGGTTCAGCTCTGCAAGCTGAAAGAGAGATATGTCACAACCTTGTTCAATCG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0323A14-r86Tr/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E356888" ref_strand="+" ref_description="SGN-E356888 [cTOS-22-I16]">
      <seq>ggacctggtggatcgttcaatttgggatggttgtcaacacaatgaagcattgagatgtatacacttggcattgctttgtgttcaagatttggcggctcacagaccaaacatgtcttctgtggttctgatgctggaaactgacaatgtaaggttgcccttgcctaggcaacctacctatacttcaatgagaagatctgtggatgaagatatatggcatgggaatcaggatttaacatcttccaacaatgtcacagttagtgtactaataggtagatgattggttaatgcttgttccttcttacatacctgcttcatttgaagagaatgggatcaagtagtgtaactatgtaaagttatagttggaactatgttcataattttttgttagctaggtaaactttcgcacatcatgtgtattgtaattagaaggtggttcagctctgcaagctgaaagagagatatgtcacaaccttgttcaatcggtaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0323A14-r86Tr/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0323A14.3" temp_strand="+" temp_description="C02HBa0323A14.3  AC215439.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0323A14 sequenced_by:kribb upload_account_name:korea">
        <position start="21749" stop="22835"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="22049" g_stop="22530" g_length="482"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="482" r_length="482" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="485" polyA_stop="496"/>
      <MATCH_line gen_id="C02HBa0323A14.3" gen_strand="+" ref_id="SGN-E356888" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>482</cumulative_length_of_scored_exons>
        <coverage percentage="0.972" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0323A14.3" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E356888" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="22049" e_stop="22530"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGACCTGGTGGATCGTTCAATTTGGGATGGTTGTCAACACAATGAAGCATTGAGATGTATACACTTGGCATTGCTTTGTGTTCAAGATTTGGCGGCTCACAGACCAAACATGTCTTCTGTGGTTCTGATGCTGGAAACTGACAATGTAAGGTTGCCCTTGCCTAGGCAACCTACCTATACTTCAATGAGAAGATCTGTGGATGAAGATATATGGCATGGGAATCAGGATTTAACATCTTCCAACAATGTCACAGTTAGTGTACTAATAGGTAGATGATTGGTTAATGCTTGTTCCTTCTTACATACCTGCTTCATTTGAAGAGAATGGGATCAAGTAGTGTAACTATGTAAAGTTATAGTTGGAACTATGTTCATAATTTTTTGTTAGCTAGGTAAACTTTCGCACATCATGTGTATTGTAATTAGAAGGTGGTTCAGCTCTGCAAGCTGAAAGAGAGATATGTCACAACCTTGTTCAATCG</genome_strand>
        <mrna_strand>GGACCTGGTGGATCGTTCAATTTGGGATGGTTGTCAACACAATGAAGCATTGAGATGTATACACTTGGCATTGCTTTGTGTTCAAGATTTGGCGGCTCACAGACCAAACATGTCTTCTGTGGTTCTGATGCTGGAAACTGACAATGTAAGGTTGCCCTTGCCTAGGCAACCTACCTATACTTCAATGAGAAGATCTGTGGATGAAGATATATGGCATGGGAATCAGGATTTAACATCTTCCAACAATGTCACAGTTAGTGTACTAATAGGTAGATGATTGGTTAATGCTTGTTCCTTCTTACATACCTGCTTCATTTGAAGAGAATGGGATCAAGTAGTGTAACTATGTAAAGTTATAGTTGGAACTATGTTCATAATTTTTTGTTAGCTAGGTAAACTTTCGCACATCATGTGTATTGTAATTAGAAGGTGGTTCAGCTCTGCAAGCTGAAAGAGAGATATGTCACAACCTTGTTCAATCG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0323A14-r86Tr/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E208421" ref_strand="+" ref_description="SGN-E208421 [cLEC-37-N1]">
      <seq>ggaaaacccccattttttcaaccctaaaaacccgtttcgtcttactgttcgattctcctcttttccactgttcccagcagaataggactcaattgctcaaaattggttaatggtgtttcgtgtagtaccgttggctctgggaatttggtgagatcgattaaaagatcaataaaatatcccccattcaagctgcacttccaacaagtggctcagagttggcaagttttgccaggaagtttattgtagccctccttcaccgtccagttccagtttggcacctgtactcgaagctataatcagatcctatcttaccaaaccccgaagctataacggacagaagagaaaaggagccagaagcttcagtctgggtgattcatgctacatttcaaaagactacacagtggaaagtttatggattggtgatgtaaagaaagaagatccaattgaacttccactgattgaatttgaggtaattgcctcagcaacaaacaacttcaatgaagaaaacaaactcggggaaggaggttttggtccagttntcaagggaaagc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0323A14-r86Tr/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0323A14.3" temp_strand="+" temp_description="C02HBa0323A14.3  AC215439.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0323A14 sequenced_by:kribb upload_account_name:korea">
        <position start="23582" stop="27218"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="23882" g_stop="24213" g_length="332"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="332" r_length="332" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="24214" i_stop="26702" i_length="2489">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.773" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="26703" g_stop="26914" g_length="212"/>
          <reference_exon_boundary r_type="cDNA" r_start="333" r_stop="544" r_length="212" r_score="0.986"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="26915" i_stop="27067" i_length="153">
            <donor d_prob="0.999" d_score="0.98"/>
            <acceptor a_prob="0.983" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="27068" g_stop="27074" g_length="7"/>
          <reference_exon_boundary r_type="cDNA" r_start="545" r_stop="551" r_length="7" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0323A14.3" gen_strand="+" ref_id="SGN-E208421" ref_strand="+">
        <total_alignment_score>0.994</total_alignment_score>
        <cumulative_length_of_scored_exons>551</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0323A14.3" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E208421" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="23882" e_stop="24213"/>
          <exon e_start="26703" e_stop="26914"/>
          <exon e_start="27068" e_stop="27074"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGAAAACCCCCATTTTTTCAACCCTAAAAACCCGTTTCGTCTTACTGTTCGATTCTCCTCTTTTCCACTGTTCCCAGCAGAATAGGACTCAATTGCTCAAAATTGGTTAATGGTGTTTCGTGTAGTACCGTTGGCTCTGGGAATTTGGTGAGATCGATTAAAAGATCAATAAAATATCCCCCATTCAAGCTGCACTTCCAACAAGTGGCTCAGAGTTGGCAAGTTTTGCCAGGAAGTTTATTGTAGCCCTCCTTCACCGTCCAGTTCCAGTTTGGCACCTGTACTCGAAGCTATAATCAGATCCTATCTTACCAAACCCCGAAGCTATAACGGTAAGTATGCCTACCATACAATGCATAATAGTTTTTATTATGTACTTTGAGAGGATTGTTGGACTCATAATTACTTTGACATATTCTAAAACAATAGTTCGGAGCGATCAAAAGGATATAGTGGAAGTAATCTTTAATTTTCATCGTTAGATATTTTTCTAAAAGAGGTGTGTTAAACCCAAACAAGTTAAGAGAATCAAACAATTCTTTCTAATGTTTACCGCCTTAAAAACTTGTACTATGTACAAATTTATATAATACCTTTTCATTTTAATTATAATAATCTTCAAAAAGAAAATACTGATACCCCTGTTTTCCAAATCCTATAAAAATTAAGCAAGTTAATTTTCATACCGAATCCGACTATTCTTTTTAAGAAAAAACAAGTATTTCAAGTTCCATTTTTTCTTCTTCTTCTTAATTATTGTTTTGAAGATAACATCTTTATTCCCAGATGTGGACTTTAGTGATCTTTAGTCCAAATGACCTCAGATCAAGTAAGACAAGTTATAGTGTCTTTACTCCCAACCCTGCATAGGCTAAGATAAATTTGGCTTCAAACATGTAGCATATTATTATTAGAGAAAGGAAAAAACAAAAAACCAAATCATTGTCCAAAAATGTTCTGAATAGTTTTTTGGACATTCTAATAGACTTGACACATTTCTAAGACCTAACTTGTCACCAAGTTTGAATCACTTGGAGAATTCCAACTATGTTCATTCATGTTTCAATTCCCTTTATTTGGTTATTGGAAGTTGCGCGGTGACTCTTTTAATTGTTCCTTGATGTTTGTTATGATACAAGTCCATTTAAGAAAATGGGATTCAGACAAGCCTGGAAAGTTCTTTTGATCTGTCTAATTTCTTGTTATATCATTCAAACATATTACTGTAATGCATCAGACACCATTCAGCAATCCTGGAAACTTTTAGTAGGAGAAACATTAACATCTGCTAGTCAAGTTTTTGAATTTGGATTCTTTACTCCAGCCAATTCCGATAAAAGGTACCTGGGGATATGGTTTAAAAATATCCCTCCTATTAAAGTTGTGTGGATTGCAAACAGAGAAAGTCCACTTAAAGTTTCTGATTCTGCTGCGAGTCTATCAATTAGCGAAAATGGAAACTTGGTGCTTCTTGATGGTACACAGACTGTTATCTGGTCAAGCAATGTGTCTATCTCTTCTAATAAAACAGTTGCTGTTGTTCTCCTGGACAGTGGGAATTTGGTGCTTAAAGATAATGTCTCGGGACAAACCTTCTGGGAGAGTTTCGATTATCCTTGTGATACTTTCTTGCCAGGAATGAAAATAGGTTTTAACAGTAAAACCGGGGAGAAATGGCTCTTGTCTTCTTGGCAGAAGGAAAATGACCCCTCACCCGGAAATTTTTCTATAGGGATCTCGGAGCAACTTTCACCTCAGTTTTTTGTATGGAACAAATTCACTCCTTACTACAGAACCGGGGAGTGGAATGGACTGAAGTTCATTGGTTTGCCTTGTATAGATTCAGCAGCCTATATAATTCAGTTTGTTTTTCAGCAAGACTTTCAAGAGGGAACCACATATTTCACCTTTCTTCCAAATACTTCATTCCTAAATTTCGTGGAGCTTCAGTCTACGGGATCTGTTCAAGTTGTTCAGTGGACCAATGGAGATCCAGCTTGGGAAATTTATGCTACAATGGTACGTGCACCATGTGATATATATAACACATGTGGACCTTCAGCAGTCTGTAGCAAGCATAACTTCCCAATTTGCAGCTGCTTAAGAGGGTTCGTGCCACAGTCTGGTGATGAATGGAGCAAAGGAAACTGGACAGGTGGTTGTGTGAGACGAACTGAATTACTCTGTCAGCAAAAAGGAAATACTCTATCTCCAGGGGTTGGACTGCAGGACAGATTTTTGAAGCTTAGCGGACTGAAACTGCCTGATCTTGCTGCTATTTTTCGCCTTGACAGTGCAAGTGAATGTGAAAAATTGTGCTTAAACAATTGTTCTTGCACTGCTTATGCTTATGTGGCAGGAATTAGGTGTATGGTGTGGTCTGGTGATCTTTTAGATATGCAGGATTACTCGTATTCAGGGGAAGATCTTTTCCTTCGGCTTGCTTACTCAGAGTTAGGTAACCACTACATTGATTTGGTTTACACTGACTTTACGATCCCAGGCCTCACTTGTCGTTACTAACTTTACGATGTAATCCATCTACTGAAGTAGTTTATTAAAATGTTTTTACAGTTTTTCCAGGTAAGCGGAAGTTTAAAAGAACACTAATCATATGTTCTGCAGTATTTTCCTGTCTCTTTTCTGGTTTTGCTCTATTTTGTTTGCTCAAGCACAAGATTCATCAAACAGGTAACAATATATGACCTCCCTAAAGCTAACAAGTTGAAAAATACATGCAGCAAATCAAACTACCTTAATGGTTTTTTTGACACAACGGACGTCTAGCCTGATCTTTAGATATTTTACTTCGTCTTAACAGGACAGAAGAGAAAAGGAGCCAGAAGCTTCAGTCTGGGTGATTCATGCTACATTTCAAAAGACTACACAGTGGAAAGTTTATGGATTGGTAATTTAAAGAAAGAAGATCCAATTGAACTTCCACTGATTGAATTTGAGGTAATTGCCTCAGCAACAAACAACTTCAATGAAGAAAACAAACTCGGGGAAGGAGGTTTTGGTCCAGTTTTCAAGGTAACTACACTTTTGTTCAAGCATTTAATCGAATATGTGATGACACACAAATCCATCATGGAATTTGCATTATTTTTTATTTGTTTTTTAAAATTATGAATTGTAAAATATGTATTCTGATCATTGGACTTTTAATTGGCGGACTCTGCACAGGGAAAGC</genome_strand>
        <mrna_strand>GGAAAACCCCCATTTTTTCAACCCTAAAAACCCGTTTCGTCTTACTGTTCGATTCTCCTCTTTTCCACTGTTCCCAGCAGAATAGGACTCAATTGCTCAAAATTGGTTAATGGTGTTTCGTGTAGTACCGTTGGCTCTGGGAATTTGGTGAGATCGATTAAAAGATCAATAAAATATCCCCCATTCAAGCTGCACTTCCAACAAGTGGCTCAGAGTTGGCAAGTTTTGCCAGGAAGTTTATTGTAGCCCTCCTTCACCGTCCAGTTCCAGTTTGGCACCTGTACTCGAAGCTATAATCAGATCCTATCTTACCAAACCCCGAAGCTATAACG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GACAGAAGAGAAAAGGAGCCAGAAGCTTCAGTCTGGGTGATTCATGCTACATTTCAAAAGACTACACAGTGGAAAGTTTATGGATTGGTGATGTAAAGAAAGAAGATCCAATTGAACTTCCACTGATTGAATTTGAGGTAATTGCCTCAGCAACAAACAACTTCAATGAAGAAAACAAACTCGGGGAAGGAGGTTTTGGTCCAGTTNTCAAG.........................................................................................................................................................GGAAAGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0323A14-r86Tr/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E396617" ref_strand="+" ref_description="SGN-E396617 [TUS-43-D16]">
      <seq>gaaaacccccattttttcaaccctaaaaacccgtttcgtcttactgttcgattctcctcttttccactgttcccagcagaataggactcaattgctcaaaattggttaatggtgtttcgtgtagtaccgttggctctgggaatttggtgagatcgattaaaagatcaataaaatatcccccattcaagctgcacttccaacaagtggctcagagttggcaagttttgccaggaagtttattgtagccctccttcaccgtccagttccagtttggcacctgtactcgaagctataatcagatcctatcttaccaaaccccgaagctataacggacagaagagaaaaggagccagaagcttcagtctgggtgattcatgctacatttcaaaagactacacagtggaaagtttatggattggtaatttaaagaaagaagatccaattgaacttccactgattgaatttgaggtaattgcctcaccaacaaacaacttcaatgaaaaaaaacaaactcggggaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0323A14-r86Tr/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0323A14.3" temp_strand="+" temp_description="C02HBa0323A14.3  AC215439.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0323A14 sequenced_by:kribb upload_account_name:korea">
        <position start="23583" stop="27190"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="23883" g_stop="24213" g_length="331"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="331" r_length="331" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="24214" i_stop="26702" i_length="2489">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.773" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="26703" g_stop="26890" g_length="188"/>
          <reference_exon_boundary r_type="cDNA" r_start="332" r_stop="520" r_length="189" r_score="0.979"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0323A14.3" gen_strand="+" ref_id="SGN-E396617" ref_strand="+">
        <total_alignment_score>0.992</total_alignment_score>
        <cumulative_length_of_scored_exons>519</cumulative_length_of_scored_exons>
        <coverage percentage="0.998" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0323A14.3" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E396617" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="23883" e_stop="24213"/>
          <exon e_start="26703" e_stop="26890"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAAAACCCCCATTTTTTCAACCCTAAAAACCCGTTTCGTCTTACTGTTCGATTCTCCTCTTTTCCACTGTTCCCAGCAGAATAGGACTCAATTGCTCAAAATTGGTTAATGGTGTTTCGTGTAGTACCGTTGGCTCTGGGAATTTGGTGAGATCGATTAAAAGATCAATAAAATATCCCCCATTCAAGCTGCACTTCCAACAAGTGGCTCAGAGTTGGCAAGTTTTGCCAGGAAGTTTATTGTAGCCCTCCTTCACCGTCCAGTTCCAGTTTGGCACCTGTACTCGAAGCTATAATCAGATCCTATCTTACCAAACCCCGAAGCTATAACGGTAAGTATGCCTACCATACAATGCATAATAGTTTTTATTATGTACTTTGAGAGGATTGTTGGACTCATAATTACTTTGACATATTCTAAAACAATAGTTCGGAGCGATCAAAAGGATATAGTGGAAGTAATCTTTAATTTTCATCGTTAGATATTTTTCTAAAAGAGGTGTGTTAAACCCAAACAAGTTAAGAGAATCAAACAATTCTTTCTAATGTTTACCGCCTTAAAAACTTGTACTATGTACAAATTTATATAATACCTTTTCATTTTAATTATAATAATCTTCAAAAAGAAAATACTGATACCCCTGTTTTCCAAATCCTATAAAAATTAAGCAAGTTAATTTTCATACCGAATCCGACTATTCTTTTTAAGAAAAAACAAGTATTTCAAGTTCCATTTTTTCTTCTTCTTCTTAATTATTGTTTTGAAGATAACATCTTTATTCCCAGATGTGGACTTTAGTGATCTTTAGTCCAAATGACCTCAGATCAAGTAAGACAAGTTATAGTGTCTTTACTCCCAACCCTGCATAGGCTAAGATAAATTTGGCTTCAAACATGTAGCATATTATTATTAGAGAAAGGAAAAAACAAAAAACCAAATCATTGTCCAAAAATGTTCTGAATAGTTTTTTGGACATTCTAATAGACTTGACACATTTCTAAGACCTAACTTGTCACCAAGTTTGAATCACTTGGAGAATTCCAACTATGTTCATTCATGTTTCAATTCCCTTTATTTGGTTATTGGAAGTTGCGCGGTGACTCTTTTAATTGTTCCTTGATGTTTGTTATGATACAAGTCCATTTAAGAAAATGGGATTCAGACAAGCCTGGAAAGTTCTTTTGATCTGTCTAATTTCTTGTTATATCATTCAAACATATTACTGTAATGCATCAGACACCATTCAGCAATCCTGGAAACTTTTAGTAGGAGAAACATTAACATCTGCTAGTCAAGTTTTTGAATTTGGATTCTTTACTCCAGCCAATTCCGATAAAAGGTACCTGGGGATATGGTTTAAAAATATCCCTCCTATTAAAGTTGTGTGGATTGCAAACAGAGAAAGTCCACTTAAAGTTTCTGATTCTGCTGCGAGTCTATCAATTAGCGAAAATGGAAACTTGGTGCTTCTTGATGGTACACAGACTGTTATCTGGTCAAGCAATGTGTCTATCTCTTCTAATAAAACAGTTGCTGTTGTTCTCCTGGACAGTGGGAATTTGGTGCTTAAAGATAATGTCTCGGGACAAACCTTCTGGGAGAGTTTCGATTATCCTTGTGATACTTTCTTGCCAGGAATGAAAATAGGTTTTAACAGTAAAACCGGGGAGAAATGGCTCTTGTCTTCTTGGCAGAAGGAAAATGACCCCTCACCCGGAAATTTTTCTATAGGGATCTCGGAGCAACTTTCACCTCAGTTTTTTGTATGGAACAAATTCACTCCTTACTACAGAACCGGGGAGTGGAATGGACTGAAGTTCATTGGTTTGCCTTGTATAGATTCAGCAGCCTATATAATTCAGTTTGTTTTTCAGCAAGACTTTCAAGAGGGAACCACATATTTCACCTTTCTTCCAAATACTTCATTCCTAAATTTCGTGGAGCTTCAGTCTACGGGATCTGTTCAAGTTGTTCAGTGGACCAATGGAGATCCAGCTTGGGAAATTTATGCTACAATGGTACGTGCACCATGTGATATATATAACACATGTGGACCTTCAGCAGTCTGTAGCAAGCATAACTTCCCAATTTGCAGCTGCTTAAGAGGGTTCGTGCCACAGTCTGGTGATGAATGGAGCAAAGGAAACTGGACAGGTGGTTGTGTGAGACGAACTGAATTACTCTGTCAGCAAAAAGGAAATACTCTATCTCCAGGGGTTGGACTGCAGGACAGATTTTTGAAGCTTAGCGGACTGAAACTGCCTGATCTTGCTGCTATTTTTCGCCTTGACAGTGCAAGTGAATGTGAAAAATTGTGCTTAAACAATTGTTCTTGCACTGCTTATGCTTATGTGGCAGGAATTAGGTGTATGGTGTGGTCTGGTGATCTTTTAGATATGCAGGATTACTCGTATTCAGGGGAAGATCTTTTCCTTCGGCTTGCTTACTCAGAGTTAGGTAACCACTACATTGATTTGGTTTACACTGACTTTACGATCCCAGGCCTCACTTGTCGTTACTAACTTTACGATGTAATCCATCTACTGAAGTAGTTTATTAAAATGTTTTTACAGTTTTTCCAGGTAAGCGGAAGTTTAAAAGAACACTAATCATATGTTCTGCAGTATTTTCCTGTCTCTTTTCTGGTTTTGCTCTATTTTGTTTGCTCAAGCACAAGATTCATCAAACAGGTAACAATATATGACCTCCCTAAAGCTAACAAGTTGAAAAATACATGCAGCAAATCAAACTACCTTAATGGTTTTTTTGACACAACGGACGTCTAGCCTGATCTTTAGATATTTTACTTCGTCTTAACAGGACAGAAGAGAAAAGGAGCCAGAAGCTTCAGTCTGGGTGATTCATGCTACATTTCAAAAGACTACACAGTGGAAAGTTTATGGATTGGTAATTTAAAGAAAGAAGATCCAATTGAACTTCCACTGATTGAATTTGAGGTAATTGCCTCAGCAACAAACAACTTCAATG-AAGAAAACAAACTCGGGGAA</genome_strand>
        <mrna_strand>GAAAACCCCCATTTTTTCAACCCTAAAAACCCGTTTCGTCTTACTGTTCGATTCTCCTCTTTTCCACTGTTCCCAGCAGAATAGGACTCAATTGCTCAAAATTGGTTAATGGTGTTTCGTGTAGTACCGTTGGCTCTGGGAATTTGGTGAGATCGATTAAAAGATCAATAAAATATCCCCCATTCAAGCTGCACTTCCAACAAGTGGCTCAGAGTTGGCAAGTTTTGCCAGGAAGTTTATTGTAGCCCTCCTTCACCGTCCAGTTCCAGTTTGGCACCTGTACTCGAAGCTATAATCAGATCCTATCTTACCAAACCCCGAAGCTATAACG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GACAGAAGAGAAAAGGAGCCAGAAGCTTCAGTCTGGGTGATTCATGCTACATTTCAAAAGACTACACAGTGGAAAGTTTATGGATTGGTAATTTAAAGAAAGAAGATCCAATTGAACTTCCACTGATTGAATTTGAGGTAATTGCCTCACCAACAAACAACTTCAATGAAAAAAAACAAACTCGGGGAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0323A14-r86Tr/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E208418" ref_strand="+" ref_description="SGN-E208418 [cLEC-37-L9]">
      <seq>aaaacccccattttttcaaccctaaaaacccgtttcgtcttactgttcgattctcctcttttccactgttcccagcagaataggactcaattgctcaaaattggttaatggtgtttcgtgtagtaccgttggctctgggaatttggtgagatcgattaaaagatcaataaaatatcccccattcaagctgcacttccaacaagtggctcagagttggcaagttttgccaggaagtttattgtagccctccttcaccgtccagttccagtttggcacctgtactcgaagctataatcagatcctatcttaccaaaccccgaagctataacggacagaagagaaaaggagccagaagcttcagtctgggtgattcatgctacatttcaaaagactacacagtggaaagtttatggattggtaatttaaagaaagaagatccaattgaacttccactgattgaatttgaggtaattgcctcagcaacaaacaacttcaatgaagaaaacaaactcggggaaggaggttttggtccagttttcaagggaaagc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0323A14-r86Tr/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0323A14.3" temp_strand="+" temp_description="C02HBa0323A14.3  AC215439.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0323A14 sequenced_by:kribb upload_account_name:korea">
        <position start="23584" stop="27218"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="23884" g_stop="24213" g_length="330"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="330" r_length="330" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="24214" i_stop="26702" i_length="2489">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.773" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="26703" g_stop="26914" g_length="212"/>
          <reference_exon_boundary r_type="cDNA" r_start="331" r_stop="542" r_length="212" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="26915" i_stop="27067" i_length="153">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.983" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="27068" g_stop="27074" g_length="7"/>
          <reference_exon_boundary r_type="cDNA" r_start="543" r_stop="549" r_length="7" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0323A14.3" gen_strand="+" ref_id="SGN-E208418" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>549</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0323A14.3" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E208418" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="23884" e_stop="24213"/>
          <exon e_start="26703" e_stop="26914"/>
          <exon e_start="27068" e_stop="27074"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAACCCCCATTTTTTCAACCCTAAAAACCCGTTTCGTCTTACTGTTCGATTCTCCTCTTTTCCACTGTTCCCAGCAGAATAGGACTCAATTGCTCAAAATTGGTTAATGGTGTTTCGTGTAGTACCGTTGGCTCTGGGAATTTGGTGAGATCGATTAAAAGATCAATAAAATATCCCCCATTCAAGCTGCACTTCCAACAAGTGGCTCAGAGTTGGCAAGTTTTGCCAGGAAGTTTATTGTAGCCCTCCTTCACCGTCCAGTTCCAGTTTGGCACCTGTACTCGAAGCTATAATCAGATCCTATCTTACCAAACCCCGAAGCTATAACGGTAAGTATGCCTACCATACAATGCATAATAGTTTTTATTATGTACTTTGAGAGGATTGTTGGACTCATAATTACTTTGACATATTCTAAAACAATAGTTCGGAGCGATCAAAAGGATATAGTGGAAGTAATCTTTAATTTTCATCGTTAGATATTTTTCTAAAAGAGGTGTGTTAAACCCAAACAAGTTAAGAGAATCAAACAATTCTTTCTAATGTTTACCGCCTTAAAAACTTGTACTATGTACAAATTTATATAATACCTTTTCATTTTAATTATAATAATCTTCAAAAAGAAAATACTGATACCCCTGTTTTCCAAATCCTATAAAAATTAAGCAAGTTAATTTTCATACCGAATCCGACTATTCTTTTTAAGAAAAAACAAGTATTTCAAGTTCCATTTTTTCTTCTTCTTCTTAATTATTGTTTTGAAGATAACATCTTTATTCCCAGATGTGGACTTTAGTGATCTTTAGTCCAAATGACCTCAGATCAAGTAAGACAAGTTATAGTGTCTTTACTCCCAACCCTGCATAGGCTAAGATAAATTTGGCTTCAAACATGTAGCATATTATTATTAGAGAAAGGAAAAAACAAAAAACCAAATCATTGTCCAAAAATGTTCTGAATAGTTTTTTGGACATTCTAATAGACTTGACACATTTCTAAGACCTAACTTGTCACCAAGTTTGAATCACTTGGAGAATTCCAACTATGTTCATTCATGTTTCAATTCCCTTTATTTGGTTATTGGAAGTTGCGCGGTGACTCTTTTAATTGTTCCTTGATGTTTGTTATGATACAAGTCCATTTAAGAAAATGGGATTCAGACAAGCCTGGAAAGTTCTTTTGATCTGTCTAATTTCTTGTTATATCATTCAAACATATTACTGTAATGCATCAGACACCATTCAGCAATCCTGGAAACTTTTAGTAGGAGAAACATTAACATCTGCTAGTCAAGTTTTTGAATTTGGATTCTTTACTCCAGCCAATTCCGATAAAAGGTACCTGGGGATATGGTTTAAAAATATCCCTCCTATTAAAGTTGTGTGGATTGCAAACAGAGAAAGTCCACTTAAAGTTTCTGATTCTGCTGCGAGTCTATCAATTAGCGAAAATGGAAACTTGGTGCTTCTTGATGGTACACAGACTGTTATCTGGTCAAGCAATGTGTCTATCTCTTCTAATAAAACAGTTGCTGTTGTTCTCCTGGACAGTGGGAATTTGGTGCTTAAAGATAATGTCTCGGGACAAACCTTCTGGGAGAGTTTCGATTATCCTTGTGATACTTTCTTGCCAGGAATGAAAATAGGTTTTAACAGTAAAACCGGGGAGAAATGGCTCTTGTCTTCTTGGCAGAAGGAAAATGACCCCTCACCCGGAAATTTTTCTATAGGGATCTCGGAGCAACTTTCACCTCAGTTTTTTGTATGGAACAAATTCACTCCTTACTACAGAACCGGGGAGTGGAATGGACTGAAGTTCATTGGTTTGCCTTGTATAGATTCAGCAGCCTATATAATTCAGTTTGTTTTTCAGCAAGACTTTCAAGAGGGAACCACATATTTCACCTTTCTTCCAAATACTTCATTCCTAAATTTCGTGGAGCTTCAGTCTACGGGATCTGTTCAAGTTGTTCAGTGGACCAATGGAGATCCAGCTTGGGAAATTTATGCTACAATGGTACGTGCACCATGTGATATATATAACACATGTGGACCTTCAGCAGTCTGTAGCAAGCATAACTTCCCAATTTGCAGCTGCTTAAGAGGGTTCGTGCCACAGTCTGGTGATGAATGGAGCAAAGGAAACTGGACAGGTGGTTGTGTGAGACGAACTGAATTACTCTGTCAGCAAAAAGGAAATACTCTATCTCCAGGGGTTGGACTGCAGGACAGATTTTTGAAGCTTAGCGGACTGAAACTGCCTGATCTTGCTGCTATTTTTCGCCTTGACAGTGCAAGTGAATGTGAAAAATTGTGCTTAAACAATTGTTCTTGCACTGCTTATGCTTATGTGGCAGGAATTAGGTGTATGGTGTGGTCTGGTGATCTTTTAGATATGCAGGATTACTCGTATTCAGGGGAAGATCTTTTCCTTCGGCTTGCTTACTCAGAGTTAGGTAACCACTACATTGATTTGGTTTACACTGACTTTACGATCCCAGGCCTCACTTGTCGTTACTAACTTTACGATGTAATCCATCTACTGAAGTAGTTTATTAAAATGTTTTTACAGTTTTTCCAGGTAAGCGGAAGTTTAAAAGAACACTAATCATATGTTCTGCAGTATTTTCCTGTCTCTTTTCTGGTTTTGCTCTATTTTGTTTGCTCAAGCACAAGATTCATCAAACAGGTAACAATATATGACCTCCCTAAAGCTAACAAGTTGAAAAATACATGCAGCAAATCAAACTACCTTAATGGTTTTTTTGACACAACGGACGTCTAGCCTGATCTTTAGATATTTTACTTCGTCTTAACAGGACAGAAGAGAAAAGGAGCCAGAAGCTTCAGTCTGGGTGATTCATGCTACATTTCAAAAGACTACACAGTGGAAAGTTTATGGATTGGTAATTTAAAGAAAGAAGATCCAATTGAACTTCCACTGATTGAATTTGAGGTAATTGCCTCAGCAACAAACAACTTCAATGAAGAAAACAAACTCGGGGAAGGAGGTTTTGGTCCAGTTTTCAAGGTAACTACACTTTTGTTCAAGCATTTAATCGAATATGTGATGACACACAAATCCATCATGGAATTTGCATTATTTTTTATTTGTTTTTTAAAATTATGAATTGTAAAATATGTATTCTGATCATTGGACTTTTAATTGGCGGACTCTGCACAGGGAAAGC</genome_strand>
        <mrna_strand>AAAACCCCCATTTTTTCAACCCTAAAAACCCGTTTCGTCTTACTGTTCGATTCTCCTCTTTTCCACTGTTCCCAGCAGAATAGGACTCAATTGCTCAAAATTGGTTAATGGTGTTTCGTGTAGTACCGTTGGCTCTGGGAATTTGGTGAGATCGATTAAAAGATCAATAAAATATCCCCCATTCAAGCTGCACTTCCAACAAGTGGCTCAGAGTTGGCAAGTTTTGCCAGGAAGTTTATTGTAGCCCTCCTTCACCGTCCAGTTCCAGTTTGGCACCTGTACTCGAAGCTATAATCAGATCCTATCTTACCAAACCCCGAAGCTATAACG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GACAGAAGAGAAAAGGAGCCAGAAGCTTCAGTCTGGGTGATTCATGCTACATTTCAAAAGACTACACAGTGGAAAGTTTATGGATTGGTAATTTAAAGAAAGAAGATCCAATTGAACTTCCACTGATTGAATTTGAGGTAATTGCCTCAGCAACAAACAACTTCAATGAAGAAAACAAACTCGGGGAAGGAGGTTTTGGTCCAGTTTTCAAG.........................................................................................................................................................GGAAAGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0323A14-r86Tr/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E398620" ref_strand="+" ref_description="SGN-E398620 [TUS-43-D16](-)">
      <seq>gatcaattcattttttccagaagagataccgcgatgcgtacacgttggccttctttgtgttcaagagcatcctagggaccgtcctactatggctgacataattctcatgctcaacagtgaaatgaaatgctcaagtcctaaacaacccacatttaagtttgaaacatacttggatcttgatggatcagcaaaagataacgaaagatgttctgtcaatgagtttagtgcatcgttgtctcaaggacgatagaacatgctattgtacattcttaaaagtttttaatcaagtacaaaaatcaagtcattaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0323A14-r86Tr/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0323A14.3" temp_strand="+" temp_description="C02HBa0323A14.3  AC215439.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0323A14 sequenced_by:kribb upload_account_name:korea">
        <position start="27813" stop="28719"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="28113" g_stop="28419" g_length="307"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="307" r_length="307" r_score="0.987"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="308" polyA_stop="321"/>
      <MATCH_line gen_id="C02HBa0323A14.3" gen_strand="+" ref_id="SGN-E398620" ref_strand="+">
        <total_alignment_score>0.987</total_alignment_score>
        <cumulative_length_of_scored_exons>307</cumulative_length_of_scored_exons>
        <coverage percentage="0.956" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0323A14.3" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E398620" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="28113" e_stop="28419"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GATCAACTCATTTTCTCCAGAAGAGATACCGCGATGCCTACACGTTGGCCTTCTCTGTGTTCAAGAGCATCCTAGGGACCGTCCTACTATGGCTGACATAATTCTCATGCTCAACAGTGAAATGAAATGCTCAAGTCCTAAACAACCCACATTTAAGTTTGAAACATACTTGGATCTTGATGGATCAGCAAAAGATAACGAAAGATGTTCTGTCAATGAGTTTAGTGCATCGTTGTCTCAAGGACGATAGAACATGCTATTGTACATTCTTAAAAGTTTTTAATCAAGTACAAAAATCAAGTCATTA</genome_strand>
        <mrna_strand>GATCAATTCATTTTTTCCAGAAGAGATACCGCGATGCGTACACGTTGGCCTTCTTTGTGTTCAAGAGCATCCTAGGGACCGTCCTACTATGGCTGACATAATTCTCATGCTCAACAGTGAAATGAAATGCTCAAGTCCTAAACAACCCACATTTAAGTTTGAAACATACTTGGATCTTGATGGATCAGCAAAAGATAACGAAAGATGTTCTGTCAATGAGTTTAGTGCATCGTTGTCTCAAGGACGATAGAACATGCTATTGTACATTCTTAAAAGTTTTTAATCAAGTACAAAAATCAAGTCATTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0323A14-r86Tr/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E278874" ref_strand="+" ref_description="SGN-E278874 [cLER-2-A21]">
      <seq>actttgtcattcgaccggaaaacgatgacagggaacagagttacctatggcagagctttgattatccaacaaacactttattacctgggatgaaacttgggtgggattcaaaatccgggatgaatagaaacataacatcatggaaatcagcaattgacccagctcccggagtcaagtagttgg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0323A14-r86Tr/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0323A14.3" temp_strand="+" temp_description="C02HBa0323A14.3  AC215439.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0323A14 sequenced_by:kribb upload_account_name:korea">
        <position start="42363" stop="43141"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="42663" g_stop="42833" g_length="171"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="171" r_length="171" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0323A14.3" gen_strand="+" ref_id="SGN-E278874" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>171</cumulative_length_of_scored_exons>
        <coverage percentage="0.934" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0323A14.3" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E278874" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="42663" e_stop="42833"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACTTTGTCATTCGACCGGAAAACGATGACAGGGAACAGAGTTACCTATGGCAGAGCTTTGATTATCCAACAAACACTTTATTACCTGGGATGAAACTTGGGTGGGATTCAAAATCCGGGATGAATAGAAACATAACATCATGGAAATCAGCAATTGACCCAGCTCCCGGAG</genome_strand>
        <mrna_strand>ACTTTGTCATTCGACCGGAAAACGATGACAGGGAACAGAGTTACCTATGGCAGAGCTTTGATTATCCAACAAACACTTTATTACCTGGGATGAAACTTGGGTGGGATTCAAAATCCGGGATGAATAGAAACATAACATCATGGAAATCAGCAATTGACCCAGCTCCCGGAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0323A14-r86Tr/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E310509" ref_strand="+" ref_description="SGN-E310509 [cTOA-9-M7]">
      <seq>caaattggaggtgatggatctggaaatagttctcgcaagacaaaaatagttgcaatagctgctggggttacagttggtatatctcttgtgttatttggactaaccctttgcatcttatcaaagagaagaaaacatcaaagttcaatccgaactaaatccgtgaacagaggcactatcgaacgaagtcaagagcttttgatgaatgcaactattattccaagtcaaagagaattttctggtgaaacttccacggaagagtttgaattgccattgtttgattacagtaccctatctacggcaacagaaaatttttctgacgcgactaagttgggccaaggaggctttggttgcgttgatatggaagagaagatgctgatctatgaatacctggagaataaaagtttagattcaattttgttcaataaacagaaaagctcgctgctcgactggcaaaagcggttcaatattatttgtgggattgctcgggggcttctataccttcatcaagattcaagat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0323A14-r86Tr/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0323A14.3" temp_strand="+" temp_description="C02HBa0323A14.3  AC215439.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0323A14 sequenced_by:kribb upload_account_name:korea">
        <position start="45720" stop="47254"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="46020" g_stop="46188" g_length="169"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="169" r_length="169" r_score="0.988"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="46189" i_stop="46276" i_length="88">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.694" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="46277" g_stop="46453" g_length="177"/>
          <reference_exon_boundary r_type="cDNA" r_start="170" r_stop="346" r_length="177" r_score="0.977"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="46454" i_stop="46685" i_length="232">
            <donor d_prob="0.434" d_score="0.98"/>
            <acceptor a_prob="0.000" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="46686" g_stop="46760" g_length="75"/>
          <reference_exon_boundary r_type="cDNA" r_start="347" r_stop="421" r_length="75" r_score="0.987"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="46761" i_stop="46858" i_length="98">
            <donor d_prob="0.000" d_score="1.00"/>
            <acceptor a_prob="0.955" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="46859" g_stop="46954" g_length="96"/>
          <reference_exon_boundary r_type="cDNA" r_start="422" r_stop="517" r_length="96" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0323A14.3" gen_strand="+" ref_id="SGN-E310509" ref_strand="+">
        <total_alignment_score>0.986</total_alignment_score>
        <cumulative_length_of_scored_exons>517</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0323A14.3" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E310509" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="46020" e_stop="46188"/>
          <exon e_start="46277" e_stop="46453"/>
          <exon e_start="46686" e_stop="46760"/>
          <exon e_start="46859" e_stop="46954"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAAATTGGAGGTGAAGGATCTGGAAATAGTTCTCGCAAGACAAAAATAGTTGCAATAGCTGCTGGGGTTACAGTTGGTATAGCTCTTGTGTTATTTGGACTAACCCTTTGCATCTTATCAAAGAGAAGAAAACATCAAAGTTCAATCCGAACTAAATCCGTGAACAGAGGTATTATATGAATCTATCCTGATTAATAAGATTGTCTAATATAAAATGCTTCATTTTCTCATGAATGTTTCTCATGATCCTAAACCAGGCACTAGCGAACGAAGTCAAGAGCTTTTGATGAATGCAACTATTATTCCAAGTAAAAGAGAATTTTCTGGTGAAACTTCCACGGAAGAGTTTGAATTGCCATTGTTTGATTACAGTACCCTAGCTACGGCAACAGAAAATTTTTCTGACGCGACTAAGTTGGGCCAAGGTGGCTTTGGTTGTGTTTACAAGGTAAATCTCAGTTATATGTAAACCATAGTGATATTATAAGAAGAAAAAGTTATCGACAAACTCAATAATATAATCTTTTGATCAGGCAATGCTGGTTGGTCAAGAAGTAGCAGTCAAAAGGCTCTCGAAGAATTCTGGACAAGGAGTAGAGGAATTTAAAAATGAGCTAAGATTGATTGCCAGGCTTCAACACAGAAATCTAGTCCGGCTTCTTGGCTGTTGTGTTGATATGGAAGAGAAGATGCTGATCTATGAATACCTGGAGAATAAAAGTTTAGATTCAATTTTGTTCAGTAAGGCTTTTTCATTATATCGTCAAGAGAGTAGTGTTTCACATCATTTACTTAGATGCTCATATAATTTGTGACTCACATTTGAATATGCTCCTCAGATAAACAGAAAAGCTCGCTGCTCGACTGGCAAAAGCGGTTCAATATTATTTGTGGGATTGCTCGGGGGCTTCTATACCTTCATCAAGATTCAAGAT</genome_strand>
        <mrna_strand>CAAATTGGAGGTGATGGATCTGGAAATAGTTCTCGCAAGACAAAAATAGTTGCAATAGCTGCTGGGGTTACAGTTGGTATATCTCTTGTGTTATTTGGACTAACCCTTTGCATCTTATCAAAGAGAAGAAAACATCAAAGTTCAATCCGAACTAAATCCGTGAACAGAG........................................................................................GCACTATCGAACGAAGTCAAGAGCTTTTGATGAATGCAACTATTATTCCAAGTCAAAGAGAATTTTCTGGTGAAACTTCCACGGAAGAGTTTGAATTGCCATTGTTTGATTACAGTACCCTATCTACGGCAACAGAAAATTTTTCTGACGCGACTAAGTTGGGCCAAGGAGGCTTTG........................................................................................................................................................................................................................................GTTGCGTTGATATGGAAGAGAAGATGCTGATCTATGAATACCTGGAGAATAAAAGTTTAGATTCAATTTTGTTCA..................................................................................................ATAAACAGAAAAGCTCGCTGCTCGACTGGCAAAAGCGGTTCAATATTATTTGTGGGATTGCTCGGGGGCTTCTATACCTTCATCAAGATTCAAGAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0323A14-r86Tr/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E233778" ref_strand="+" ref_description="SGN-E233778 [cLED-14-M12]">
      <seq>caggcttcaacacagaaatctagtccggcttcttggctgttgtgttgatatggaagagaagatgctgatctatgaatacctggagaataaaagtgtatattcaatagtgttcaataaacagaaaagctcgctgctcgactggcaaaagcggttcaatattatttgcgggattgctcgggggcttctatgccttcatcaagattcaagatttaggattatccatagagaccttaaagcaagcaatattctgcttgataaggatttgacccccaaaatatcagattctggcatggcaagaatgttcggccgagatgagactgaacgaaataccaaatgagtagccggaacctatggttacatgtctccggaatatgcaatggatggccatgtctctgttaagtccgatgttttcagctttggggttttggtgttagaaatagtaaccggaaagaagaacaggggattctattatcaaaatgaccaactcaaccttcttggacatgcgtggagactctggaaagaagggagcggctcagagctactagatccatctattggag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0323A14-r86Tr/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0323A14.3" temp_strand="+" temp_description="C02HBa0323A14.3  AC215439.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0323A14 sequenced_by:kribb upload_account_name:korea">
        <position start="46348" stop="47781"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="46648" g_stop="46760" g_length="113"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="113" r_length="113" r_score="0.965"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="46761" i_stop="46858" i_length="98">
            <donor d_prob="0.000" d_score="0.92"/>
            <acceptor a_prob="0.955" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="46859" g_stop="47096" g_length="238"/>
          <reference_exon_boundary r_type="cDNA" r_start="114" r_stop="351" r_length="238" r_score="0.958"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="47097" i_stop="47182" i_length="86">
            <donor d_prob="0.975" d_score="0.88"/>
            <acceptor a_prob="0.994" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="47183" g_stop="47333" g_length="151"/>
          <reference_exon_boundary r_type="cDNA" r_start="352" r_stop="502" r_length="151" r_score="0.974"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="47334" i_stop="47423" i_length="90">
            <donor d_prob="0.961" d_score="0.98"/>
            <acceptor a_prob="0.908" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="47424" g_stop="47481" g_length="58"/>
          <reference_exon_boundary r_type="cDNA" r_start="503" r_stop="560" r_length="58" r_score="0.983"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0323A14.3" gen_strand="+" ref_id="SGN-E233778" ref_strand="+">
        <total_alignment_score>0.966</total_alignment_score>
        <cumulative_length_of_scored_exons>560</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0323A14.3" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E233778" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="46648" e_stop="46760"/>
          <exon e_start="46859" e_stop="47096"/>
          <exon e_start="47183" e_stop="47333"/>
          <exon e_start="47424" e_stop="47481"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAGGCTTCAACACAGAAATCTAGTCCGGCTTCTTGGCTGTTGTGTTGATATGGAAGAGAAGATGCTGATCTATGAATACCTGGAGAATAAAAGTTTAGATTCAATTTTGTTCAGTAAGGCTTTTTCATTATATCGTCAAGAGAGTAGTGTTTCACATCATTTACTTAGATGCTCATATAATTTGTGACTCACATTTGAATATGCTCCTCAGATAAACAGAAAAGCTCGCTGCTCGACTGGCAAAAGCGGTTCAATATTATTTGTGGGATTGCTCGGGGGCTTCTATACCTTCATCAAGATTCAAGATTTAGGATTATCCATAGAGACCTTAAAGCAAGCAATATTCTGCTTGATAAGGATTTGACCCCCAAAATATCAGATTTTGGCATGGCAAGAATTTTTGGCGGAGATGAGACTGAAGGAAATACCAAAAGAGTAGTTGGAACCTAGTAAGCACACGACATAATTTCTTCACATTTTTCATAGAACCTTTAAAGCTGTTTCTAAATCTGTTTTTTTTTTTGTTTTGATGTAGTGGTTACATGTCTCCGGAATATGCAATGGATGGCCTCTTCTCTGTTAAGTCCGATGTTTTCAGCTTTGGGGTTTTGGTGTTAGAAATAGTAACCGGAAAGAAGAACAGGGGATTCTATTATCAAAATAACCAACTCAACCTTCTTGGACATGTAAGTTCACAGATCATGTGTTAGCTTCATTATTGGCAACACATTCATCATTTGATTAATTTCTGATAAAGAAAGTAATCGACTATGCAGGCGTGGAGACTCTGGAAAGAAGGGAGCGGCTCAGAGCTACTAGATCCATCTTTTGGAG</genome_strand>
        <mrna_strand>CAGGCTTCAACACAGAAATCTAGTCCGGCTTCTTGGCTGTTGTGTTGATATGGAAGAGAAGATGCTGATCTATGAATACCTGGAGAATAAAAGTGTATATTCAATAGTGTTCA..................................................................................................ATAAACAGAAAAGCTCGCTGCTCGACTGGCAAAAGCGGTTCAATATTATTTGCGGGATTGCTCGGGGGCTTCTATGCCTTCATCAAGATTCAAGATTTAGGATTATCCATAGAGACCTTAAAGCAAGCAATATTCTGCTTGATAAGGATTTGACCCCCAAAATATCAGATTCTGGCATGGCAAGAATGTTCGGCCGAGATGAGACTGAACGAAATACCAAATGAGTAGCCGGAACCTA......................................................................................TGGTTACATGTCTCCGGAATATGCAATGGATGGCCATGTCTCTGTTAAGTCCGATGTTTTCAGCTTTGGGGTTTTGGTGTTAGAAATAGTAACCGGAAAGAAGAACAGGGGATTCTATTATCAAAATGACCAACTCAACCTTCTTGGACAT..........................................................................................GCGTGGAGACTCTGGAAAGAAGGGAGCGGCTCAGAGCTACTAGATCCATCTATTGGAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0323A14-r86Tr/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E396658" ref_strand="+" ref_description="SGN-E396658 [TUS-43-N18]">
      <seq>gcttctataccttcatcaagattcaagatttaggattatccatagagaccttaaagcaagcaatattctgcttgataaggatttgacccccaaaatatcagattttggcatggcaagaatttttggcggagatgagactgaaggaaataccaaaagagtagttggaacctatggttacatgtctccggaatatgcaatggatggcctcttctctgttaagtccgatgttttcagctttggggttttggtgttagaaatagtaaccggaaagaagaacaggggattctattatcaaaataaccaactcaaccttcttggacatgcgtggagactctggaaagaagggagcggctcagagctactagatccatcttttggagaatctttttctccatctgaagtaatgagatgcatacaggttggactgttgtgtgtccaggaacaagcagaagaccgaccaaacatggccactgtggttttgatgctaggtagcgaaagtgcatcacttcctcagcctaaaaacccaggattttgccttggaagaagacccgttgattctgattcatattcgactaattatgaagaaacttgcactgtcaatcaagttacagttaccatgatagatccccggtagttgatggtatcgccctcagaaagtgtgtatattac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0323A14-r86Tr/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0323A14.3" temp_strand="+" temp_description="C02HBa0323A14.3  AC215439.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0323A14 sequenced_by:kribb upload_account_name:korea">
        <position start="46626" stop="48070"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="46926" g_stop="47096" g_length="171"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="171" r_length="171" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="47097" i_stop="47182" i_length="86">
            <donor d_prob="0.975" d_score="1.00"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="47183" g_stop="47333" g_length="151"/>
          <reference_exon_boundary r_type="cDNA" r_start="172" r_stop="322" r_length="151" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="47334" i_stop="47423" i_length="90">
            <donor d_prob="0.961" d_score="1.00"/>
            <acceptor a_prob="0.908" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="47424" g_stop="47770" g_length="347"/>
          <reference_exon_boundary r_type="cDNA" r_start="323" r_stop="669" r_length="347" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0323A14.3" gen_strand="+" ref_id="SGN-E396658" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>669</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0323A14.3" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E396658" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="46926" e_stop="47096"/>
          <exon e_start="47183" e_stop="47333"/>
          <exon e_start="47424" e_stop="47770"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCTTCTATACCTTCATCAAGATTCAAGATTTAGGATTATCCATAGAGACCTTAAAGCAAGCAATATTCTGCTTGATAAGGATTTGACCCCCAAAATATCAGATTTTGGCATGGCAAGAATTTTTGGCGGAGATGAGACTGAAGGAAATACCAAAAGAGTAGTTGGAACCTAGTAAGCACACGACATAATTTCTTCACATTTTTCATAGAACCTTTAAAGCTGTTTCTAAATCTGTTTTTTTTTTTGTTTTGATGTAGTGGTTACATGTCTCCGGAATATGCAATGGATGGCCTCTTCTCTGTTAAGTCCGATGTTTTCAGCTTTGGGGTTTTGGTGTTAGAAATAGTAACCGGAAAGAAGAACAGGGGATTCTATTATCAAAATAACCAACTCAACCTTCTTGGACATGTAAGTTCACAGATCATGTGTTAGCTTCATTATTGGCAACACATTCATCATTTGATTAATTTCTGATAAAGAAAGTAATCGACTATGCAGGCGTGGAGACTCTGGAAAGAAGGGAGCGGCTCAGAGCTACTAGATCCATCTTTTGGAGAATCTTTTTCTCCATCTGAAGTAATGAGATGCATACAGGTTGGACTGTTGTGTGTCCAGGAACAAGCAGAAGACCGACCAAACATGGCCACTGTGGTTTTGATGCTAGGTAGCGAAAGTGCATCACTTCCTCAGCCTAAAAACCCAGGATTTTGCCTTGGAAGAAGACCCGTTGATTCTGATTCATATTCGACTAATTATGAAGAAACTTGCACTGTCAATCAAGTTACAGTTACCATGATAGATCCCCGGTAGTTGATGGTATCGCCCTCAGAAAGTGTGTATATTAC</genome_strand>
        <mrna_strand>GCTTCTATACCTTCATCAAGATTCAAGATTTAGGATTATCCATAGAGACCTTAAAGCAAGCAATATTCTGCTTGATAAGGATTTGACCCCCAAAATATCAGATTTTGGCATGGCAAGAATTTTTGGCGGAGATGAGACTGAAGGAAATACCAAAAGAGTAGTTGGAACCTA......................................................................................TGGTTACATGTCTCCGGAATATGCAATGGATGGCCTCTTCTCTGTTAAGTCCGATGTTTTCAGCTTTGGGGTTTTGGTGTTAGAAATAGTAACCGGAAAGAAGAACAGGGGATTCTATTATCAAAATAACCAACTCAACCTTCTTGGACAT..........................................................................................GCGTGGAGACTCTGGAAAGAAGGGAGCGGCTCAGAGCTACTAGATCCATCTTTTGGAGAATCTTTTTCTCCATCTGAAGTAATGAGATGCATACAGGTTGGACTGTTGTGTGTCCAGGAACAAGCAGAAGACCGACCAAACATGGCCACTGTGGTTTTGATGCTAGGTAGCGAAAGTGCATCACTTCCTCAGCCTAAAAACCCAGGATTTTGCCTTGGAAGAAGACCCGTTGATTCTGATTCATATTCGACTAATTATGAAGAAACTTGCACTGTCAATCAAGTTACAGTTACCATGATAGATCCCCGGTAGTTGATGGTATCGCCCTCAGAAAGTGTGTATATTAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0323A14-r86Tr/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E231230" ref_strand="+" ref_description="SGN-E231230 [cLED-5-F9]">
      <seq>cttctataccttcatcaagattcaagatttaggattatccatagagaccttaaagcaagcaatattctgcttgataaggatttgacccccaaaatatcagattttggcatggcaagaatttttggcggagatgagactgaaggaaataccaaaagagtagttggaacctatggttacatgtctccggaatatgcaatggatggcctcttctctgttaagtccgatgttttcagctttggggttttggtgttagaaatagtaaccggaaagaagaacaggggattctattatcaaaataaccaactcaaccttcttggacatgcgtggagactctggaaagaagggagcggctcaaagctactagatccatcttttggagaatctttttctccatctgaagtaatgagatgcatacaggttggactgttgtgtgtccaggaacaagcagaagaccgaccaaacatggccactgtggttttgatgctaggtagcgaaagtgcatcacttcctcagcctaaaaacccaggattttgccttggaagaagacccgttgattctgattcatattcgactaattatg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0323A14-r86Tr/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0323A14.3" temp_strand="+" temp_description="C02HBa0323A14.3  AC215439.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0323A14 sequenced_by:kribb upload_account_name:korea">
        <position start="46627" stop="47982"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="46927" g_stop="47096" g_length="170"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="170" r_length="170" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="47097" i_stop="47182" i_length="86">
            <donor d_prob="0.975" d_score="1.00"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="47183" g_stop="47333" g_length="151"/>
          <reference_exon_boundary r_type="cDNA" r_start="171" r_stop="321" r_length="151" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="47334" i_stop="47423" i_length="90">
            <donor d_prob="0.961" d_score="1.00"/>
            <acceptor a_prob="0.908" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="47424" g_stop="47682" g_length="259"/>
          <reference_exon_boundary r_type="cDNA" r_start="322" r_stop="580" r_length="259" r_score="0.996"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0323A14.3" gen_strand="+" ref_id="SGN-E231230" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>580</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0323A14.3" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E231230" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="46927" e_stop="47096"/>
          <exon e_start="47183" e_stop="47333"/>
          <exon e_start="47424" e_stop="47682"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTTCTATACCTTCATCAAGATTCAAGATTTAGGATTATCCATAGAGACCTTAAAGCAAGCAATATTCTGCTTGATAAGGATTTGACCCCCAAAATATCAGATTTTGGCATGGCAAGAATTTTTGGCGGAGATGAGACTGAAGGAAATACCAAAAGAGTAGTTGGAACCTAGTAAGCACACGACATAATTTCTTCACATTTTTCATAGAACCTTTAAAGCTGTTTCTAAATCTGTTTTTTTTTTTGTTTTGATGTAGTGGTTACATGTCTCCGGAATATGCAATGGATGGCCTCTTCTCTGTTAAGTCCGATGTTTTCAGCTTTGGGGTTTTGGTGTTAGAAATAGTAACCGGAAAGAAGAACAGGGGATTCTATTATCAAAATAACCAACTCAACCTTCTTGGACATGTAAGTTCACAGATCATGTGTTAGCTTCATTATTGGCAACACATTCATCATTTGATTAATTTCTGATAAAGAAAGTAATCGACTATGCAGGCGTGGAGACTCTGGAAAGAAGGGAGCGGCTCAGAGCTACTAGATCCATCTTTTGGAGAATCTTTTTCTCCATCTGAAGTAATGAGATGCATACAGGTTGGACTGTTGTGTGTCCAGGAACAAGCAGAAGACCGACCAAACATGGCCACTGTGGTTTTGATGCTAGGTAGCGAAAGTGCATCACTTCCTCAGCCTAAAAACCCAGGATTTTGCCTTGGAAGAAGACCCGTTGATTCTGATTCATATTCGACTAATTATG</genome_strand>
        <mrna_strand>CTTCTATACCTTCATCAAGATTCAAGATTTAGGATTATCCATAGAGACCTTAAAGCAAGCAATATTCTGCTTGATAAGGATTTGACCCCCAAAATATCAGATTTTGGCATGGCAAGAATTTTTGGCGGAGATGAGACTGAAGGAAATACCAAAAGAGTAGTTGGAACCTA......................................................................................TGGTTACATGTCTCCGGAATATGCAATGGATGGCCTCTTCTCTGTTAAGTCCGATGTTTTCAGCTTTGGGGTTTTGGTGTTAGAAATAGTAACCGGAAAGAAGAACAGGGGATTCTATTATCAAAATAACCAACTCAACCTTCTTGGACAT..........................................................................................GCGTGGAGACTCTGGAAAGAAGGGAGCGGCTCAAAGCTACTAGATCCATCTTTTGGAGAATCTTTTTCTCCATCTGAAGTAATGAGATGCATACAGGTTGGACTGTTGTGTGTCCAGGAACAAGCAGAAGACCGACCAAACATGGCCACTGTGGTTTTGATGCTAGGTAGCGAAAGTGCATCACTTCCTCAGCCTAAAAACCCAGGATTTTGCCTTGGAAGAAGACCCGTTGATTCTGATTCATATTCGACTAATTATG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0323A14-r86Tr/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E711751" ref_strand="+" ref_description="SGN-E711751 [FB02DE05]">
      <seq>cgttttagacccccaaaatatcagattttggcatggnaagaacctttggcggagatgagactgaaggaaataccaaaagagtagttggaacctatggttacatgtctccggaatatgcaatggatggcctcttctctgttaagtccgatgttttcagctttggggttttggtgttagaaatagtaaccggaaagaagaacaggggattctattatcaaaataaccaactcaaccttcttggacatgcgtggagactctggaaagaagggagcggctcagagctactagatccatcttttggagaatctttttctccatctgaagtaatgagatgcatacaggttggactgttgtgtgtccaggaacaagcagaagaccgaccaaacatggccactgtggttttgatgctaggtagcgaaagtgcatcacttcctcagcctaaaaacccaggattttgccttggaagaagacccgttgattctgattcatattcgactaattatgaagaaacttgcactgtcaatcaagttacagttaccatgatagatccccggtagttgatggtatcgccctcagaaagtgtgtatattactacaagaggttcacaattttctcttgtatactatctcagtttttgtttttgggtaagttttgtgaaagataaagagcataattaggtcttttttttctcattacatacaatttgtgaattcaaaatcttgtcttttttcatcatcaatgtaataggccaatcattccttttccatatccttgtaaattactgtgtcattattgatgtgaatccaaaggaatatcttgtgaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0323A14-r86Tr/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0323A14.3" temp_strand="+" temp_description="C02HBa0323A14.3  AC215439.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0323A14 sequenced_by:kribb upload_account_name:korea">
        <position start="46705" stop="48300"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="47003" g_stop="47096" g_length="94"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="94" r_length="94" r_score="0.926"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="47097" i_stop="47182" i_length="86">
            <donor d_prob="0.975" d_score="1.00"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="47183" g_stop="47333" g_length="151"/>
          <reference_exon_boundary r_type="cDNA" r_start="95" r_stop="245" r_length="151" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="47334" i_stop="47423" i_length="90">
            <donor d_prob="0.961" d_score="1.00"/>
            <acceptor a_prob="0.908" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="47424" g_stop="48006" g_length="583"/>
          <reference_exon_boundary r_type="cDNA" r_start="246" r_stop="829" r_length="584" r_score="0.979"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0323A14.3" gen_strand="+" ref_id="SGN-E711751" ref_strand="+">
        <total_alignment_score>0.977</total_alignment_score>
        <cumulative_length_of_scored_exons>828</cumulative_length_of_scored_exons>
        <coverage percentage="0.999" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0323A14.3" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E711751" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="47003" e_stop="47096"/>
          <exon e_start="47183" e_stop="47333"/>
          <exon e_start="47424" e_stop="48006"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGGATTTGACCCCCAAAATATCAGATTTTGGCATGGCAAGAATTTTTGGCGGAGATGAGACTGAAGGAAATACCAAAAGAGTAGTTGGAACCTAGTAAGCACACGACATAATTTCTTCACATTTTTCATAGAACCTTTAAAGCTGTTTCTAAATCTGTTTTTTTTTTTGTTTTGATGTAGTGGTTACATGTCTCCGGAATATGCAATGGATGGCCTCTTCTCTGTTAAGTCCGATGTTTTCAGCTTTGGGGTTTTGGTGTTAGAAATAGTAACCGGAAAGAAGAACAGGGGATTCTATTATCAAAATAACCAACTCAACCTTCTTGGACATGTAAGTTCACAGATCATGTGTTAGCTTCATTATTGGCAACACATTCATCATTTGATTAATTTCTGATAAAGAAAGTAATCGACTATGCAGGCGTGGAGACTCTGGAAAGAAGGGAGCGGCTCAGAGCTACTAGATCCATCTTTTGGAGAATCTTTTTCTCCATCTGAAGTAATGAGATGCATACAGGTTGGACTGTTGTGTGTCCAGGAACAAGCAGAAGACCGACCAAACATGGCCACTGTGGTTTTGATGCTAGGTAGCGAAAGTGCATCACTTCCTCAGCCTAAAAACCCAGGATTTTGCCTTGGAAGAAGACCCGTTGATTCTGATTCATATTCGACTAATTATGAAGAAACTTGCACTGTCAATCAAGTTACAGTTACCATGATAGATCCCCGGTAGTTGATGGTATCGCCCTCAGAAAGTGTGTATATTACTACAAGAGGTTCACAATTTTCTCTTGTATACTATCTCAGTTTTTGTTTTTGGGTAAGTTTTGTGAAAGATAAAGAGCATAATTAGGTC-TTTTTTTCTCATTACATACAATTTGTGAATTCAAAATCTTGTCTTTTTTCATCATCAATGTAATAGGCCAATCATTCCTTTTCCATATCCTTCTAAATTACTGTGTCATTATTGATGTGATTCAGAAGGAATATCTTGTGCATTCATC</genome_strand>
        <mrna_strand>CGTTTTAGACCCCCAAAATATCAGATTTTGGCATGGNAAGAACCTTTGGCGGAGATGAGACTGAAGGAAATACCAAAAGAGTAGTTGGAACCTA......................................................................................TGGTTACATGTCTCCGGAATATGCAATGGATGGCCTCTTCTCTGTTAAGTCCGATGTTTTCAGCTTTGGGGTTTTGGTGTTAGAAATAGTAACCGGAAAGAAGAACAGGGGATTCTATTATCAAAATAACCAACTCAACCTTCTTGGACAT..........................................................................................GCGTGGAGACTCTGGAAAGAAGGGAGCGGCTCAGAGCTACTAGATCCATCTTTTGGAGAATCTTTTTCTCCATCTGAAGTAATGAGATGCATACAGGTTGGACTGTTGTGTGTCCAGGAACAAGCAGAAGACCGACCAAACATGGCCACTGTGGTTTTGATGCTAGGTAGCGAAAGTGCATCACTTCCTCAGCCTAAAAACCCAGGATTTTGCCTTGGAAGAAGACCCGTTGATTCTGATTCATATTCGACTAATTATGAAGAAACTTGCACTGTCAATCAAGTTACAGTTACCATGATAGATCCCCGGTAGTTGATGGTATCGCCCTCAGAAAGTGTGTATATTACTACAAGAGGTTCACAATTTTCTCTTGTATACTATCTCAGTTTTTGTTTTTGGGTAAGTTTTGTGAAAGATAAAGAGCATAATTAGGTCTTTTTTTTCTCATTACATACAATTTGTGAATTCAAAATCTTGTCTTTTTTCATCATCAATGTAATAGGCCAATCATTCCTTTTCCATATCCTTGTAAATTACTGTGTCATTATTGATGTGAATCCAAAGGAATATCTTGTGAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0323A14-r86Tr/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E396806" ref_strand="+" ref_description="SGN-E396806 [TUS-43-N18](-)">
      <seq>tttttttgttaagtccgatgttttcagctttggggttttggtgttagaaatagtaaccggaaagaagaacaggggattttattatcaaaataaccaattcaaccttcttggacatgcgtggagattttggaaagaagggagcggttcagagctactagatccattttttggagaatttttttttccatttgaagtaatgagatgcatacaggttggactgttgtgtgtccaggaacaagcagaagaccgaccaaacatggcccctgtggttttgatgttaggtagggaaagtgcatcacttcctcagcctaaaaacccaggattttgccttggaagaagacccgttgattttgattcatatttgactaattatgaagaaacttgcactgtcaatcaagttacagttaccatgatagatccccggtagttgatggtttcgccctcagaaagtgtgtatattattacaagaggttcccaatttttttttgtatactatttcagtttttgtttttgggtaagttttgtgaaagataaagggcataattaggtttttttttttcattacatacaatttgggaattcaaaattttgttttttttcatcatcaatgtaataggccaatcattccttttccatatcctttttaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0323A14-r86Tr/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0323A14.3" temp_strand="+" temp_description="C02HBa0323A14.3  AC215439.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0323A14 sequenced_by:kribb upload_account_name:korea">
        <position start="46920" stop="53883"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="47219" g_stop="47333" g_length="115"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="115" r_length="115" r_score="0.957"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="47334" i_stop="47423" i_length="90">
            <donor d_prob="0.961" d_score="0.96"/>
            <acceptor a_prob="0.908" a_score="0.92"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="47424" g_stop="47954" g_length="531"/>
          <reference_exon_boundary r_type="cDNA" r_start="116" r_stop="646" r_length="531" r_score="0.951"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="47955" i_stop="48454" i_length="500">
            <donor d_prob="0.000" d_score="0.96"/>
            <acceptor a_prob="0.000" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="48455" g_stop="48471" g_length="17"/>
          <reference_exon_boundary r_type="cDNA" r_start="647" r_stop="663" r_length="17" r_score="0.765"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="48472" i_stop="48646" i_length="175">
            <donor d_prob="0.468" d_score="0.00"/>
            <acceptor a_prob="0.921" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="48647" g_stop="48664" g_length="18"/>
          <reference_exon_boundary r_type="cDNA" r_start="664" r_stop="681" r_length="18" r_score="0.778"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0323A14.3" gen_strand="+" ref_id="SGN-E396806" ref_strand="+">
        <total_alignment_score>0.952</total_alignment_score>
        <cumulative_length_of_scored_exons>681</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0323A14.3" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E396806" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="47219" e_stop="47333"/>
          <exon e_start="47424" e_stop="47954"/>
          <exon e_start="48455" e_stop="48471"/>
          <exon e_start="48647" e_stop="48664"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTTCTCTGTTAAGTCCGATGTTTTCAGCTTTGGGGTTTTGGTGTTAGAAATAGTAACCGGAAAGAAGAACAGGGGATTCTATTATCAAAATAACCAACTCAACCTTCTTGGACATGTAAGTTCACAGATCATGTGTTAGCTTCATTATTGGCAACACATTCATCATTTGATTAATTTCTGATAAAGAAAGTAATCGACTATGCAGGCGTGGAGACTCTGGAAAGAAGGGAGCGGCTCAGAGCTACTAGATCCATCTTTTGGAGAATCTTTTTCTCCATCTGAAGTAATGAGATGCATACAGGTTGGACTGTTGTGTGTCCAGGAACAAGCAGAAGACCGACCAAACATGGCCACTGTGGTTTTGATGCTAGGTAGCGAAAGTGCATCACTTCCTCAGCCTAAAAACCCAGGATTTTGCCTTGGAAGAAGACCCGTTGATTCTGATTCATATTCGACTAATTATGAAGAAACTTGCACTGTCAATCAAGTTACAGTTACCATGATAGATCCCCGGTAGTTGATGGTATCGCCCTCAGAAAGTGTGTATATTACTACAAGAGGTTCACAATTTTCTCTTGTATACTATCTCAGTTTTTGTTTTTGGGTAAGTTTTGTGAAAGATAAAGAGCATAATTAGGTCTTTTTTTCTCATTACATACAATTTGTGAATTCAAAATCTTGTCTTTTTTCATCATCAATGTAATAGGCCAATCATTCCTTTTCCATATCCTTCTAAATTACTGTGTCATTATTGATGTGATTCAGAAGGAATATCTTGTGCATTCATCTTCATTTCTACTAAATAAAATTTAAACTTTTGGTCTTTTCATTTCCTCGTATTGAATATGTTGTGCGGAATTTGAGATAATACGAGAAAATATAAACACAAAAACAAGACAACAGTTTACGTGGTTCACCAATAAATTGGCTACGTCCACGGGAAGAGAGGGAGCAGTTTTATTATGGAGAGGCAAAAACAGAATTACAGAATAGGGTTTCCCATAGCGTCTATATATAGTGCTAAGCTACGCCCTAACAGGCTTGGGCCCAACATACAGAATCAACAGAAAATTAAGGGCCCAATACAACAACATTGTATACCGTCGGGCCGGGGGCGTCTCCGCCCCCCCGGACCCCAGGCCAGGGGGCGCGTCGCCCCCTGACCCCCCCGACTCGCTGACCGGGCAGCGAGACCCCCGTCCTTTCTGTTTGTAGCGGGTCCGATTCAAGGCATTCAACAGAATAAAGAAAAAGTTGGTCTTACAAATAATGAATTAATACATTGGATAAGATAAATCATAAGAACTGTAGTGTTCAATTGTTCATATCAAAGTCACTTCTTTTATTGATTCCTTCTTAATCTATTATGTATTACCACATTGAATTGTATTTATGTTTCGTAATTTTTTTTCCTCTCAATTTTTTTAGTAACAAAATAAAAGAAAA</genome_strand>
        <mrna_strand>TTTTTTTGTTAAGTCCGATGTTTTCAGCTTTGGGGTTTTGGTGTTAGAAATAGTAACCGGAAAGAAGAACAGGGGATTTTATTATCAAAATAACCAATTCAACCTTCTTGGACAT..........................................................................................GCGTGGAGATTTTGGAAAGAAGGGAGCGGTTCAGAGCTACTAGATCCATTTTTTGGAGAATTTTTTTTTCCATTTGAAGTAATGAGATGCATACAGGTTGGACTGTTGTGTGTCCAGGAACAAGCAGAAGACCGACCAAACATGGCCCCTGTGGTTTTGATGTTAGGTAGGGAAAGTGCATCACTTCCTCAGCCTAAAAACCCAGGATTTTGCCTTGGAAGAAGACCCGTTGATTTTGATTCATATTTGACTAATTATGAAGAAACTTGCACTGTCAATCAAGTTACAGTTACCATGATAGATCCCCGGTAGTTGATGGTTTCGCCCTCAGAAAGTGTGTATATTATTACAAGAGGTTCCCAATTTTTTTTTGTATACTATTTCAGTTTTTGTTTTTGGGTAAGTTTTGTGAAAGATAAAGGGCATAATTAGGTTTTTTTTTTTCATTACATACAATTTGGGAATTCAAAATTTTGTTTTTTTTCATCATCAATGTAATAGGCCAATCATTCCTTTTCCATATCCTTTTTA....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAAAAAAAAAAAAAAAA...............................................................................................................................................................................AAAAAAAAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0323A14-r86Tr/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E220662" ref_strand="+" ref_description="SGN-E220662 [cLEL-12-P22](-)">
      <seq>gcctaaaaacccaggattttgccttgaaaaaaaccacgttgattctgattcatattcgactaattatgaagaaacttgcactgtcaatcaagttacagttaccatgatagatccccggtagttgatggtatcgccctcagaaagtgtgtatattactacaagaggttcacaattttctcttgtatactatctcagtttttgtttttgggtaagttttgtgaaagataaagagcataattaggtctttttttctcattacatacaatttgtgaattcaaaatcttgtcttttttcatcaacaatgtcataggccaatcattccttttccaaaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0323A14-r86Tr/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0323A14.3" temp_strand="+" temp_description="C02HBa0323A14.3  AC215439.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0323A14 sequenced_by:kribb upload_account_name:korea">
        <position start="47315" stop="48245"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="47615" g_stop="47942" g_length="328"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="328" r_length="328" r_score="0.979"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="329" polyA_stop="349"/>
      <MATCH_line gen_id="C02HBa0323A14.3" gen_strand="+" ref_id="SGN-E220662" ref_strand="+">
        <total_alignment_score>0.979</total_alignment_score>
        <cumulative_length_of_scored_exons>328</cumulative_length_of_scored_exons>
        <coverage percentage="0.940" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0323A14.3" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E220662" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="47615" e_stop="47942"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCCTAAAAACCCAGGATTTTGCCTTGGAAGAAGACCCGTTGATTCTGATTCATATTCGACTAATTATGAAGAAACTTGCACTGTCAATCAAGTTACAGTTACCATGATAGATCCCCGGTAGTTGATGGTATCGCCCTCAGAAAGTGTGTATATTACTACAAGAGGTTCACAATTTTCTCTTGTATACTATCTCAGTTTTTGTTTTTGGGTAAGTTTTGTGAAAGATAAAGAGCATAATTAGGTCTTTTTTTCTCATTACATACAATTTGTGAATTCAAAATCTTGTCTTTTTTCATCATCAATGTAATAGGCCAATCATTCCTTTTCC</genome_strand>
        <mrna_strand>GCCTAAAAACCCAGGATTTTGCCTTGAAAAAAACCACGTTGATTCTGATTCATATTCGACTAATTATGAAGAAACTTGCACTGTCAATCAAGTTACAGTTACCATGATAGATCCCCGGTAGTTGATGGTATCGCCCTCAGAAAGTGTGTATATTACTACAAGAGGTTCACAATTTTCTCTTGTATACTATCTCAGTTTTTGTTTTTGGGTAAGTTTTGTGAAAGATAAAGAGCATAATTAGGTCTTTTTTTCTCATTACATACAATTTGTGAATTCAAAATCTTGTCTTTTTTCATCAACAATGTCATAGGCCAATCATTCCTTTTCC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0323A14-r86Tr/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E353554" ref_strand="+" ref_description="SGN-E353554 [cTOS-15-H1]">
      <seq>aagaggttcacaattttctcttgtatactatctcagtttttgtttttgggtaagttttgtgaaagataaagagcataattaggtctttttttctcattacatacaatttgtgaattcaaaatcttgtcttttttcatcatcaatgtaataggccaatcattccttttccatatccttctaaattactgtgtcattattgatgtgattcagaaggaatatcttgtgcattcatcttcatttctactaaataaaatttaaacttttggtcttttcaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0323A14-r86Tr/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0323A14.3" temp_strand="+" temp_description="C02HBa0323A14.3  AC215439.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0323A14 sequenced_by:kribb upload_account_name:korea">
        <position start="47474" stop="48347"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="47774" g_stop="48046" g_length="273"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="273" r_length="273" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0323A14.3" gen_strand="+" ref_id="SGN-E353554" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>273</cumulative_length_of_scored_exons>
        <coverage percentage="0.975" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0323A14.3" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E353554" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="47774" e_stop="48046"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAGAGGTTCACAATTTTCTCTTGTATACTATCTCAGTTTTTGTTTTTGGGTAAGTTTTGTGAAAGATAAAGAGCATAATTAGGTCTTTTTTTCTCATTACATACAATTTGTGAATTCAAAATCTTGTCTTTTTTCATCATCAATGTAATAGGCCAATCATTCCTTTTCCATATCCTTCTAAATTACTGTGTCATTATTGATGTGATTCAGAAGGAATATCTTGTGCATTCATCTTCATTTCTACTAAATAAAATTTAAACTTTTGGTCTTTTC</genome_strand>
        <mrna_strand>AAGAGGTTCACAATTTTCTCTTGTATACTATCTCAGTTTTTGTTTTTGGGTAAGTTTTGTGAAAGATAAAGAGCATAATTAGGTCTTTTTTTCTCATTACATACAATTTGTGAATTCAAAATCTTGTCTTTTTTCATCATCAATGTAATAGGCCAATCATTCCTTTTCCATATCCTTCTAAATTACTGTGTCATTATTGATGTGATTCAGAAGGAATATCTTGTGCATTCATCTTCATTTCTACTAAATAAAATTTAAACTTTTGGTCTTTTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0323A14-r86Tr/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E245054" ref_strand="+" ref_description="SGN-E245054 [cLEF-13-K20]">
      <seq>ggattcaaagagaaattaggcgagggaggttacggaactgtgtacaaaggaaagcttcaaagtggaaggtatgtagctgtgaagatgttgagcaagcctaaagctgatgggcaagatttcatgaatgaagtagctaccatcggaaggattcatcatgtcaacgtggttggactcgcagggtattgcgttgagggaacaaagcgtgctcttgtatacgacttcatgtccaatggatcacttgataagtacatcaggactgatcaagaaggaagtcctctgttaagttggcagaagaagtatgacattattcttggagtggctcgaggaatcgggtatttgcatcgaggctgtgatgtacgaatattgcattttgacatcaaaccacacaacattctcttggatgagaatttcattccaaagatttctgactttgggcttgcgaaac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0323A14-r86Tr/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0323A14.3" temp_strand="+" temp_description="C02HBa0323A14.3  AC215439.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0323A14 sequenced_by:kribb upload_account_name:korea">
        <position start="51038" stop="52081"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="51338" g_stop="51782" g_length="445"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="445" r_length="445" r_score="0.910"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0323A14.3" gen_strand="+" ref_id="SGN-E245054" ref_strand="+">
        <total_alignment_score>0.910</total_alignment_score>
        <cumulative_length_of_scored_exons>445</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0323A14.3" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E245054" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="51338" e_stop="51782"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGATTCAAAGAGAAATTAGGTGAGGGAGGTTATGGCAGTGTATACAAAGGAAAGCTTCAAAGTGGAAGGGATGTGGCAGTGAAGATGTTAAGCAAGCCTAAATCTGGTGGGCAAGATTTTATGAATGAAGTAGCTAGCATTGGAAGGATTCATCATGTCAATGTGGTTGGACTCGTGGGATATTGTGTTGAGGGAACTAAGCGTGCTCTTGTATACGACTTCATGCCCAATGGATCACTCGACAAGTATATTAGCATCAGTGAAGAAGGAAGTCCTCTGTTAAGTTGGCAGAGGAAGTATGACATTATTCTTGGAGTGGCTCGAGGAACTGGATATTTGCATCGAGGCTGTGATGTACAAATTTTGCATTTTGACATCAAACCACACAACATTCTTTTGGATGAGAATTTCATTCCAAAGATTTCTGACTTTGGGCTTGCAAAAT</genome_strand>
        <mrna_strand>GGATTCAAAGAGAAATTAGGCGAGGGAGGTTACGGAACTGTGTACAAAGGAAAGCTTCAAAGTGGAAGGTATGTAGCTGTGAAGATGTTGAGCAAGCCTAAAGCTGATGGGCAAGATTTCATGAATGAAGTAGCTACCATCGGAAGGATTCATCATGTCAACGTGGTTGGACTCGCAGGGTATTGCGTTGAGGGAACAAAGCGTGCTCTTGTATACGACTTCATGTCCAATGGATCACTTGATAAGTACATCAGGACTGATCAAGAAGGAAGTCCTCTGTTAAGTTGGCAGAAGAAGTATGACATTATTCTTGGAGTGGCTCGAGGAATCGGGTATTTGCATCGAGGCTGTGATGTACGAATATTGCATTTTGACATCAAACCACACAACATTCTCTTGGATGAGAATTTCATTCCAAAGATTTCTGACTTTGGGCTTGCGAAAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0323A14-r86Tr/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E379648" ref_strand="+" ref_description="SGN-E379648 [TUS-1-M11](-)">
      <seq>agaggaagtatgacattattcttggagtggctcgaggaatcgggtatttgcatcgaggctgtgatgtacgaatattgcattgtgacatcaaaccacacaacattctcttggatgagaatttcattccaaagatttctgactttgggcttgcgaaactatatccaacagataagagcattgtgactctcacagctgctcgtggaacgattggatatgttgctccagagttgatcagcagaagcattggagcaatctcgtacaaagctgatgtttacagcttcggaatgctgctaatggaaatgttggacttgaagagaaatgaagttgcaaatgaagagaattccagccaatattttccttataatatttacgatacgttcaacaaggggaaagagattgtggtggatgaagaagcaaatgatgatgaaaagaagatggctagaaagctgagtttggttgcgttatggtgcatacaaacaaatccgatactacgcccttcaatgagtaaagtagtacaaatgcttgaaggcgaagttgaagcgctagaagtacctcctcagcctcttcaatctccaccgattgtccatcagatcatggaaagttctacgacattatcgtctgattcaatagctttgttagatcattccgttgaggtagacatttatgctgattgattatagttgatgtaatgtttatgtgaaatagacatagcaaatccaacatcttcccgaagtgagatagaatacaaaataaacaaataa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0323A14-r86Tr/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0323A14.3" temp_strand="+" temp_description="C02HBa0323A14.3  AC215439.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0323A14 sequenced_by:kribb upload_account_name:korea">
        <position start="51327" stop="52578"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="51627" g_stop="52340" g_length="714"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="702" r_length="702" r_score="0.908"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0323A14.3" gen_strand="+" ref_id="SGN-E379648" ref_strand="+">
        <total_alignment_score>0.908</total_alignment_score>
        <cumulative_length_of_scored_exons>714</cumulative_length_of_scored_exons>
        <coverage percentage="0.938" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0323A14.3" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E379648" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="51627" e_stop="52340"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGAGGAAGTATGACATTATTCTTGGAGTGGCTCGAGGAACTGGATATTTGCATCGAGGCTGTGATGTACAAATTTTGCATTTTGACATCAAACCACACAACATTCTTTTGGATGAGAATTTCATTCCAAAGATTTCTGACTTTGGGCTTGCAAAATTATATCCACCAGGTAATAGCATAGTGACTCTCACAGCTGCTCGAGGAACGATTGGCTATGTAGCTCCAGAGTTGATCAGCAGAAGCATCGGGGAAATCTCTTACAAAGCTGATGTTTACAGCTTTGGAATGCTGCTCATGGAAATGCTCGACTTGAAAAGACCTGAAGTTGCAAATGAAGAGAATTCCAGCCAATATTTTCCTTATTATATTTACGATAAGTTCAACAAGGGGAAGGAGATTGTGGTGGATGAAGAAGCAAATGATGATGAAAAGAAGATGGCTAGAAAGCTCGCTTTAGTTGCGTTATGGTGCATACAAACAAATCCGATACAACGCCCTTCGATGAGTAGAGTATTAGAAATGCTTGAAGGTGAAGTTGAAGTGCTAGAAGTACCTCCTCAGCCTCTTCAATCTCAACCGATTGTTCATCAGATCATGGGAAGTTCTATGACATTTTCTTCTGATTCAATGGCTTTGTTAGAAAATACGGCTGATAATCTCGTTGAAGTAGACATTTCTTCTGATTGACCATAGTTGATGTAATATTTATGTGAAA</genome_strand>
        <mrna_strand>AGAGGAAGTATGACATTATTCTTGGAGTGGCTCGAGGAATCGGGTATTTGCATCGAGGCTGTGATGTACGAATATTGCATTGTGACATCAAACCACACAACATTCTCTTGGATGAGAATTTCATTCCAAAGATTTCTGACTTTGGGCTTGCGAAACTATATCCAACAGATAAGAGCATTGTGACTCTCACAGCTGCTCGTGGAACGATTGGATATGTTGCTCCAGAGTTGATCAGCAGAAGCATTGGAGCAATCTCGTACAAAGCTGATGTTTACAGCTTCGGAATGCTGCTAATGGAAATGTTGGACTTGAAGAGAAATGAAGTTGCAAATGAAGAGAATTCCAGCCAATATTTTCCTTATAATATTTACGATACGTTCAACAAGGGGAAAGAGATTGTGGTGGATGAAGAAGCAAATGATGATGAAAAGAAGATGGCTAGAAAGCTGAGTTTGGTTGCGTTATGGTGCATACAAACAAATCCGATACTACGCCCTTCAATGAGTAAAGTAGTACAAATGCTTGAAGGCGAAGTTGAAGCGCTAGAAGTACCTCCTCAGCCTCTTCAATCTCCACCGATTGTCCATCAGATCATGGAAAGTTCTACGACATTATCGTCTGATTCAATAGCTTTGTTAG---AT----C--AT--TC-CGTTGAGGTAGACATTTATGCTGATTGATTATAGTTGATGTAATGTTTATGTGAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0323A14-r86Tr/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E327630" ref_strand="+" ref_description="SGN-E327630 [cTOC-20-N19]">
      <seq>aacgttacatcggaatttggtataacaatgttcctgaacttactgttgtttgggttgccaacagagataaccctgttaatggcacatctgggattctcaccatcgattcaactgggaatcttgttatacgtctcgatgcggaaagaaaaactgcagcctggagaacaaatgtttcttcagctaggaaacgagcagactcgtatacagctaagctggaggattcagggaattttgtgttgtttcaagactccaaaatggatgttattgaatggcagagctttgattatcctaccaatactctgcttccttcaatgaaatatgggatagacaagagaacgggattgaaccggtttctgacatcatggaaatcgttgatcgatccaggcactggagagtatcgttacacaatggagctcaatgggacacctcaagttttcttgtacaagaactctagcaggatttggcggacaggatcctggacgggtcatggttggagtggtgtaccagaaatgagcccgcgattcatcttcagccttagttatgtagacaatgataccgaggtttccttgacatatggcatacatgacagttcaataatctcaagaatggtcctgaatgaatctgggatcgtgaaccggttaacttggcaagagagtgagcgaaagtgggtgcaattctggtctgcccctaaagacccttgtgacaattatgaacattgtggagcatttagcaattgcaatctg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0323A14-r86Tr/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0323A14.3" temp_strand="+" temp_description="C02HBa0323A14.3  AC215439.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0323A14 sequenced_by:kribb upload_account_name:korea">
        <position start="80444" stop="81787"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="80744" g_stop="81487" g_length="744"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="743" r_length="743" r_score="0.999"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0323A14.3" gen_strand="+" ref_id="SGN-E327630" ref_strand="+">
        <total_alignment_score>0.999</total_alignment_score>
        <cumulative_length_of_scored_exons>744</cumulative_length_of_scored_exons>
        <coverage percentage="1.001" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0323A14.3" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E327630" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="80744" e_stop="81487"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AACGTTACATCGGAATTTGGTATAACAATGTTCCTGAACTTACTGTTGTTTGGGTTGCCAACAGAGATAACCCTGTTAATGGCACATCTGGGATTCTCACCATCGATTCAACTGGGAATCTTGTTATACGTCTCGATGCGGAAAGAAAAACTGCAGCCTGGAGAACAAATGTTTCTTCAGCTAGGAAACGAGCAGACTCGTATACAGCTAAGCTGGAGGATTCAGGGAATTTTGTGTTGTTTCAAGACTCCAAAATGGATGTTATTGAATGGCAGAGCTTTGATTATCCTACCAATACTCTGCTTCCTTCAATGAAATATGGGATAGACAAGAGAACGGGATTGAACCGGTTTCTGACATCATGGAAATCGTTGATCGATCCAGGCACTGGAGAGTATCGTTACACAATGGAGCTCAATGGGACACCTCAAGTTTTCTTGTACAAGAACTCTAGCAGGATTTGGCGGACAGGATCCTGGACGGGTCATGGTTGGAGTGGTGTACCAGAAATGAGCCCGCGATTCATCTTCAGCCTTAGTTATGTAGACAATGATACCGAGGTTTCCTTGACATATGGCATACATGACAGTTCAATAATCTCAAGAATGGTCCTGAATGAATCTGGGATCGTGAACCGGTTAACTTGGCAAGAGAGTGAGCGAAAGTGGGTGCAATTCTGGTCTGCCCCTAAAGACCCTTGTGACAATTATGAACATTGTGGAGCATTTAGCAATTGGCAATCTG</genome_strand>
        <mrna_strand>AACGTTACATCGGAATTTGGTATAACAATGTTCCTGAACTTACTGTTGTTTGGGTTGCCAACAGAGATAACCCTGTTAATGGCACATCTGGGATTCTCACCATCGATTCAACTGGGAATCTTGTTATACGTCTCGATGCGGAAAGAAAAACTGCAGCCTGGAGAACAAATGTTTCTTCAGCTAGGAAACGAGCAGACTCGTATACAGCTAAGCTGGAGGATTCAGGGAATTTTGTGTTGTTTCAAGACTCCAAAATGGATGTTATTGAATGGCAGAGCTTTGATTATCCTACCAATACTCTGCTTCCTTCAATGAAATATGGGATAGACAAGAGAACGGGATTGAACCGGTTTCTGACATCATGGAAATCGTTGATCGATCCAGGCACTGGAGAGTATCGTTACACAATGGAGCTCAATGGGACACCTCAAGTTTTCTTGTACAAGAACTCTAGCAGGATTTGGCGGACAGGATCCTGGACGGGTCATGGTTGGAGTGGTGTACCAGAAATGAGCCCGCGATTCATCTTCAGCCTTAGTTATGTAGACAATGATACCGAGGTTTCCTTGACATATGGCATACATGACAGTTCAATAATCTCAAGAATGGTCCTGAATGAATCTGGGATCGTGAACCGGTTAACTTGGCAAGAGAGTGAGCGAAAGTGGGTGCAATTCTGGTCTGCCCCTAAAGACCCTTGTGACAATTATGAACATTGTGGAGCATTTAGCAATT-GCAATCTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0323A14-r86Tr/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E325597" ref_strand="+" ref_description="SGN-E325597 [cTOC-15-P11]">
      <seq>aatgatagggattctagtagggtctgctgcagcaataattcttgcactctctttggcatgttgtttggtgatcaatataaggggaaatgataatgaaagaagtgaaagtttagcatcctatgacggcatggaagaaagtaaacatgcagaaatcactatctttgatctaaccacaataactaatgccactgatcagttctctgatgctaacaaacttggtgaaggaggatttggtagcgtatacaagggtcacctgacagatggacaagtaatagctgtcaaaagactttcagtaacttcggggcaagggacggaggagttcaagaatgaagtcacagtaattgcaagacttcagcacagaaatttggtgaggcttttaggatgttgcgttcaacgaggagagaagatgttggtttatgaatatatgccaaacaaatccttggacagttttatttttgatctcttattcaccaactttcaaacggtgatctagataaaacaaaagggtctttgttggattggggaaaacggtttggaatcatacatgggattgcacgaggaatgttataccttcaccaagactctagactaagaattattcatagagacctaaaagcaagcaatgttttactcgatgcctccatgcaaccgaaaatatcagactttggaatggncagaatatttggaggtgaccaatggaagcaacacaaatcg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0323A14-r86Tr/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0323A14.3" temp_strand="+" temp_description="C02HBa0323A14.3  AC215439.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0323A14 sequenced_by:kribb upload_account_name:korea">
        <position start="81754" stop="83536"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="82054" g_stop="82142" g_length="89"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="89" r_length="89" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="82143" i_stop="82331" i_length="189">
            <donor d_prob="0.987" d_score="1.00"/>
            <acceptor a_prob="0.933" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="82332" g_stop="82489" g_length="158"/>
          <reference_exon_boundary r_type="cDNA" r_start="90" r_stop="247" r_length="158" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="82490" i_stop="82645" i_length="156">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.893" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="82646" g_stop="82856" g_length="211"/>
          <reference_exon_boundary r_type="cDNA" r_start="248" r_stop="458" r_length="211" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="82857" i_stop="82978" i_length="122">
            <donor d_prob="0.671" d_score="1.00"/>
            <acceptor a_prob="0.623" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="82979" g_stop="83236" g_length="258"/>
          <reference_exon_boundary r_type="cDNA" r_start="459" r_stop="714" r_length="256" r_score="0.988"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0323A14.3" gen_strand="+" ref_id="SGN-E325597" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>716</cumulative_length_of_scored_exons>
        <coverage percentage="1.003" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0323A14.3" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E325597" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="82054" e_stop="82142"/>
          <exon e_start="82332" e_stop="82489"/>
          <exon e_start="82646" e_stop="82856"/>
          <exon e_start="82979" e_stop="83236"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AATGATAGGGATTCTAGTAGGGTCTGCTGCAGCAATAATTCTTGCACTCTCTTTGGCATGTTGTTTGGTGATCAATATAAGGGGAAATGGTAAGGATATTATTCTATATCATAATTTAATCGAACATTATTTTCAGTATCTGTATGGCAGCAGCTATAATGGTGAAGTAACTTTAGAAACCTAGAGCTCCTTCTACCTTTCAATATCGTGCAGCAAAAAAAAAAATGGCACAACTGCAAATTTCATTTGATCCTAATCTGTGTTTGCTGATGTCACAGATAATGAAAGAAGTGAAAGTTTAGCATCCTATGACGGCATGGAAGAAAGTAAACATGCAGAAATCACTATCTTTGATCTAACCACAATAACTAATGCCACTGATCAGTTCTCTGATGCTAACAAACTTGGTGAAGGAGGATTTGGTAGCGTATACAAGGTAACAACTCCCAAATATGATTAAATTCCTAGCGATCAACATTATCTTTATAGGTGGCTGCAAATACATGTAATAATAATTGTTAAACCAAGCTTTTCACCCTTAAGAAAAAGAAGAAGGTACGTGTACTAAATAATAATCTGGATTCAATATCAGGGTCACCTGACAGATGGACAAGTAATAGCTGTCAAAAGACTTTCAGTAACTTCGGGGCAAGGGACGGAGGAGTTCAAGAATGAAGTCACAGTAATTGCAAGACTTCAGCACAGAAATTTGGTGAGGCTTTTAGGATGTTGCGTTCAACGAGGAGAGAAGATGTTGGTTTATGAATATATGCCAAACAAATCCTTGGACAGTTTTATTTTTGGTAAGGAACATCTCCAGGACCGAAATTTCTTTCATTGACCTCCAGTCTCTACATGCTTTTACATGTTTACTGATGATTAATGATTACTGCTTTAACGTGTGTGTGTGTGTGTCCCTAAAAAGATCTCTTATTCACCAACTTTCAAACGGTGATCTAGATAAAACAAAAGGGTCTTTGTTGGATTGGGGAAAACGGTTTGGAATCATACATGGGATTGCACGAGGAATGTTATACCTTCACCAAGACTCTAGACTAAGAATTATTCATAGAGACCTAAAAGCAAGCAATGTTTTACTCGATGCCTCCATGCAACCGAAAATATCAGACTTTGGAATGGCCAGAATATTTGGAGGTGACCAAATGGAAGCAAACACAAATCG</genome_strand>
        <mrna_strand>AATGATAGGGATTCTAGTAGGGTCTGCTGCAGCAATAATTCTTGCACTCTCTTTGGCATGTTGTTTGGTGATCAATATAAGGGGAAATG.............................................................................................................................................................................................ATAATGAAAGAAGTGAAAGTTTAGCATCCTATGACGGCATGGAAGAAAGTAAACATGCAGAAATCACTATCTTTGATCTAACCACAATAACTAATGCCACTGATCAGTTCTCTGATGCTAACAAACTTGGTGAAGGAGGATTTGGTAGCGTATACAAG............................................................................................................................................................GGTCACCTGACAGATGGACAAGTAATAGCTGTCAAAAGACTTTCAGTAACTTCGGGGCAAGGGACGGAGGAGTTCAAGAATGAAGTCACAGTAATTGCAAGACTTCAGCACAGAAATTTGGTGAGGCTTTTAGGATGTTGCGTTCAACGAGGAGAGAAGATGTTGGTTTATGAATATATGCCAAACAAATCCTTGGACAGTTTTATTTTTG..........................................................................................................................ATCTCTTATTCACCAACTTTCAAACGGTGATCTAGATAAAACAAAAGGGTCTTTGTTGGATTGGGGAAAACGGTTTGGAATCATACATGGGATTGCACGAGGAATGTTATACCTTCACCAAGACTCTAGACTAAGAATTATTCATAGAGACCTAAAAGCAAGCAATGTTTTACTCGATGCCTCCATGCAACCGAAAATATCAGACTTTGGAATGGNCAGAATATTTGGAGGTGACC-AATGGAAGC-AACACAAATCG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0323A14-r86Tr/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E325738" ref_strand="+" ref_description="SGN-E325738 [cTOC-15-P9]">
      <seq>aatgatagggattctagtagggtctgctgcagcaataattcttgcactctctttggcatgttgtttggtgatcaatataaggggaaatgataatgaaagaagtgaaagtttagcatcctatgacggcatggaagaaagtaaacatgcagaaatcactatctttgatctaaccacaataactaatgccactgatcagttctctgatgctaacaaacttggtgaaggaggatttggtagcgtatacaagggtcacctgacagatggacaagtaatagctgtcaaaagactttcagtaacttcggggcaagggacggaggagttcaagaatgaagtcacagtaattgcaagacttcagcacagaaatttggtgaggcttttaggatgttgcgttcaacgaggagagaagatgttggtttatgaatatatg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0323A14-r86Tr/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0323A14.3" temp_strand="+" temp_description="C02HBa0323A14.3  AC215439.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0323A14 sequenced_by:kribb upload_account_name:korea">
        <position start="81754" stop="83125"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="82054" g_stop="82142" g_length="89"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="89" r_length="89" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="82143" i_stop="82331" i_length="189">
            <donor d_prob="0.987" d_score="1.00"/>
            <acceptor a_prob="0.933" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="82332" g_stop="82489" g_length="158"/>
          <reference_exon_boundary r_type="cDNA" r_start="90" r_stop="247" r_length="158" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="82490" i_stop="82645" i_length="156">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.893" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="82646" g_stop="82825" g_length="180"/>
          <reference_exon_boundary r_type="cDNA" r_start="248" r_stop="427" r_length="180" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0323A14.3" gen_strand="+" ref_id="SGN-E325738" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>427</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0323A14.3" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E325738" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="82054" e_stop="82142"/>
          <exon e_start="82332" e_stop="82489"/>
          <exon e_start="82646" e_stop="82825"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AATGATAGGGATTCTAGTAGGGTCTGCTGCAGCAATAATTCTTGCACTCTCTTTGGCATGTTGTTTGGTGATCAATATAAGGGGAAATGGTAAGGATATTATTCTATATCATAATTTAATCGAACATTATTTTCAGTATCTGTATGGCAGCAGCTATAATGGTGAAGTAACTTTAGAAACCTAGAGCTCCTTCTACCTTTCAATATCGTGCAGCAAAAAAAAAAATGGCACAACTGCAAATTTCATTTGATCCTAATCTGTGTTTGCTGATGTCACAGATAATGAAAGAAGTGAAAGTTTAGCATCCTATGACGGCATGGAAGAAAGTAAACATGCAGAAATCACTATCTTTGATCTAACCACAATAACTAATGCCACTGATCAGTTCTCTGATGCTAACAAACTTGGTGAAGGAGGATTTGGTAGCGTATACAAGGTAACAACTCCCAAATATGATTAAATTCCTAGCGATCAACATTATCTTTATAGGTGGCTGCAAATACATGTAATAATAATTGTTAAACCAAGCTTTTCACCCTTAAGAAAAAGAAGAAGGTACGTGTACTAAATAATAATCTGGATTCAATATCAGGGTCACCTGACAGATGGACAAGTAATAGCTGTCAAAAGACTTTCAGTAACTTCGGGGCAAGGGACGGAGGAGTTCAAGAATGAAGTCACAGTAATTGCAAGACTTCAGCACAGAAATTTGGTGAGGCTTTTAGGATGTTGCGTTCAACGAGGAGAGAAGATGTTGGTTTATGAATATATG</genome_strand>
        <mrna_strand>AATGATAGGGATTCTAGTAGGGTCTGCTGCAGCAATAATTCTTGCACTCTCTTTGGCATGTTGTTTGGTGATCAATATAAGGGGAAATG.............................................................................................................................................................................................ATAATGAAAGAAGTGAAAGTTTAGCATCCTATGACGGCATGGAAGAAAGTAAACATGCAGAAATCACTATCTTTGATCTAACCACAATAACTAATGCCACTGATCAGTTCTCTGATGCTAACAAACTTGGTGAAGGAGGATTTGGTAGCGTATACAAG............................................................................................................................................................GGTCACCTGACAGATGGACAAGTAATAGCTGTCAAAAGACTTTCAGTAACTTCGGGGCAAGGGACGGAGGAGTTCAAGAATGAAGTCACAGTAATTGCAAGACTTCAGCACAGAAATTTGGTGAGGCTTTTAGGATGTTGCGTTCAACGAGGAGAGAAGATGTTGGTTTATGAATATATG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0323A14-r86Tr/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E249503" ref_strand="+" ref_description="SGN-E249503 [cLEF-56-B19]">
      <seq>tttttttttttctgaatgtgaatgcgcttccattaactggcttaacacaactgacaaagggcgccatttaattcacagatggagtagaaaccctctgtgtttatgcttctttcctatcaatcctttgccacccacctacctttaagtctataacatggaccatggggaatcataagttagatagtaaagaaaaaggaattttgtatttctttcgaaatagttattgaatagttagcataagctctagcgaccatgaactgttgaaatag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0323A14-r86Tr/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0323A14.3" temp_strand="-" temp_description="C02HBa0323A14.3  AC215439.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0323A14 sequenced_by:kribb upload_account_name:korea">
        <position start="84548" stop="83689"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="84257" g_stop="83989" g_length="269"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="269" r_length="269" r_score="0.967"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0323A14.3" gen_strand="-" ref_id="SGN-E249503" ref_strand="+">
        <total_alignment_score>0.967</total_alignment_score>
        <cumulative_length_of_scored_exons>269</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0323A14.3" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E249503" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="84257" e_stop="83989"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATCAAACACTTCTGAATGTGAATGCGCTTCCATTAACTGCCTTAACACAACTGACAAAGGGCGCCATTTAATTCACAGATGGAGTAGAAACCCTCTGTGTTTATGCTTCTTTCCTATCAATCCTTTGCCACCCACCTACCTTTAAGTCTATAACATGGACCATGGGGAATCATAAGTTAGATAGTAAAGAAAAAGGAATTTTGTATTTCTTTCGAAATAGTTATTGAATAGTTAGCATAAGCTCTAGCGACCATGAACTGTTGAAATAG</genome_strand>
        <mrna_strand>TTTTTTTTTTTCTGAATGTGAATGCGCTTCCATTAACTGGCTTAACACAACTGACAAAGGGCGCCATTTAATTCACAGATGGAGTAGAAACCCTCTGTGTTTATGCTTCTTTCCTATCAATCCTTTGCCACCCACCTACCTTTAAGTCTATAACATGGACCATGGGGAATCATAAGTTAGATAGTAAAGAAAAAGGAATTTTGTATTTCTTTCGAAATAGTTATTGAATAGTTAGCATAAGCTCTAGCGACCATGAACTGTTGAAATAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0323A14-r86Tr/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E262800" ref_strand="+" ref_description="SGN-E262800 [cLEG-63-P6]">
      <seq>cttgctgaaaatggctataaaaggaagtcaaattttgattttttaaacactgaaaatttttctttctctgcatttatttttctctcaaataaaatcaaagtgtcgatcgactgagtctgtgtgacttgttgttgttcttaagttcgttgaagttaaagaagtttgaggtaccgctatttctttaacaggtttaatccgttttatcttgagagaaattaatccataaccttgggtacagtgagggaattaaatttcttaaggacacatagtagtttctgtggactcggattaattcttgtattctatattattttctgcttcatcttatttctgtttctgtttattaactttataaataaaagttattataagagtaacaatcttaagaaaatttata</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0323A14-r86Tr/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0323A14.3" temp_strand="-" temp_description="C02HBa0323A14.3  AC215439.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0323A14 sequenced_by:kribb upload_account_name:korea">
        <position start="87292" stop="86304"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="86992" g_stop="86594" g_length="399"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="397" r_length="397" r_score="0.910"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0323A14.3" gen_strand="-" ref_id="SGN-E262800" ref_strand="+">
        <total_alignment_score>0.910</total_alignment_score>
        <cumulative_length_of_scored_exons>399</cumulative_length_of_scored_exons>
        <coverage percentage="1.005" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0323A14.3" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E262800" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="86992" e_stop="86594"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTTGCTGAAAATGGCTATAAAAGGAAGTCAATTTTTGATTATTTTTTAATCACTGAAATTTTTTCTTTCTCTGCATTTATTTTTCTCTCAAATAAAATCAAAGTGTCGATCGACTGAGTCTGTGTGACTTATTGCTGTTCTTCAGTTCGTTGAAGTTAAAGAAGTTTGAGGTACCGCTATTTCTTTAACAGGTTTAATCCGTTTTATCTTGGGAGAAATTAATCCATAACCTTGGGTACAGTGAGGGGATTAAATTTCTTAAGGACATACAGTAGTTCCTGTGGATTCGGATTAATTCTTCTATTTTAAATT-TTTTCTGCTTCATCTTGTTTCTGTTTCTGTTCATTAACTTCATAAATACAAGTTATTGTAAGAATAACACTCGCAAGCTGCGTCTTA</genome_strand>
        <mrna_strand>CTTGCTGAAAATGGCTATAAAAGGAAGTCAAATTTTGA---TTTTTTAAACACTGAAAATTTTTCTTTCTCTGCATTTATTTTTCTCTCAAATAAAATCAAAGTGTCGATCGACTGAGTCTGTGTGACTTGTTGTTGTTCTTAAGTTCGTTGAAGTTAAAGAAGTTTGAGGTACCGCTATTTCTTTAACAGGTTTAATCCGTTTTATCTTGAGAGAAATTAATCCATAACCTTGGGTACAGTGAGGGAATTAAATTTCTTAAGGACACATAGTAGTTTCTGTGGACTCGGATTAATTCTTGTATTCTATATTATTTTCTGCTTCATCTTATTTCTGTTTCTGTTTATTAACTTTATAAATAAAAGTTATTATAAGAGTAACAATCTTAAGAAAATTTATA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0323A14-r86Tr/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E258205" ref_strand="+" ref_description="SGN-E258205 [cLEG-49-B23]">
      <seq>aatttttctttctctgcatttatttttctctcaaataaaatcaaagtgtcgatcgactgagtctgtgtgacttgttgttgttcttaagttcgttgaagttaaagaagtttgaggtaccgctatttctttaacaggtttaatccgttttatcttgagagaaattaatccataaccttgggtacagtgagggaattaaatttcttaaggacacatagtagtttctgtggactcggattaattcttgtattctatattattttctgcttcatcttatttctggttctgtttattaactttataaataaaaggtattataagagtaacaatct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0323A14-r86Tr/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0323A14.3" temp_strand="-" temp_description="C02HBa0323A14.3  AC215439.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0323A14 sequenced_by:kribb upload_account_name:korea">
        <position start="87236" stop="86309"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="86935" g_stop="86608" g_length="328"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="329" r_length="329" r_score="0.924"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0323A14.3" gen_strand="-" ref_id="SGN-E258205" ref_strand="+">
        <total_alignment_score>0.924</total_alignment_score>
        <cumulative_length_of_scored_exons>328</cumulative_length_of_scored_exons>
        <coverage percentage="0.997" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0323A14.3" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E258205" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="86935" e_stop="86608"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATTTTTTCTTTCTCTGCATTTATTTTTCTCTCAAATAAAATCAAAGTGTCGATCGACTGAGTCTGTGTGACTTATTGCTGTTCTTCAGTTCGTTGAAGTTAAAGAAGTTTGAGGTACCGCTATTTCTTTAACAGGTTTAATCCGTTTTATCTTGGGAGAAATTAATCCATAACCTTGGGTACAGTGAGGGGATTAAATTTCTTAAGGACATACAGTAGTTCCTGTGGATTCGGATTAATTCTTCTATTTTAAATT-TTTTCTGCTTCATCTTGTTTCTGTTTCTGTTCATTAACTTCATAAATACAAGTTATTGTAAGAATAACACTCG</genome_strand>
        <mrna_strand>AATTTTTCTTTCTCTGCATTTATTTTTCTCTCAAATAAAATCAAAGTGTCGATCGACTGAGTCTGTGTGACTTGTTGTTGTTCTTAAGTTCGTTGAAGTTAAAGAAGTTTGAGGTACCGCTATTTCTTTAACAGGTTTAATCCGTTTTATCTTGAGAGAAATTAATCCATAACCTTGGGTACAGTGAGGGAATTAAATTTCTTAAGGACACATAGTAGTTTCTGTGGACTCGGATTAATTCTTGTATTCTATATTATTTTCTGCTTCATCTTATTTCTGGTTCTGTTTATTAACTTTATAAATAAAAGGTATTATAAGAGTAACAATCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0323A14-r86Tr/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E261310" ref_strand="+" ref_description="SGN-E261310 [cLEG-68-F10]">
      <seq>ggacatgttccttgctgaaaatggctataaaaggaagtcaaattttgattttttaaacactgaaaatttttctttctctgcatttatttttctctcaaataaaatcaaagtgtcgatcgactgagtctgtgtgacttgttgttgttcttaagttcgttgaagttaaagaagtttgaggtaccgctatttctttaacaggtttaatccgttttatcttgagagaaatt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0323A14-r86Tr/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0323A14.3" temp_strand="-" temp_description="C02HBa0323A14.3  AC215439.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0323A14 sequenced_by:kribb upload_account_name:korea">
        <position start="87301" stop="86473"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="87002" g_stop="86773" g_length="230"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="227" r_length="227" r_score="0.948"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0323A14.3" gen_strand="-" ref_id="SGN-E261310" ref_strand="+">
        <total_alignment_score>0.948</total_alignment_score>
        <cumulative_length_of_scored_exons>230</cumulative_length_of_scored_exons>
        <coverage percentage="1.013" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0323A14.3" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E261310" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="87002" e_stop="86773"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGACAGGTTCCTTGCTGAAAATGGCTATAAAAGGAAGTCAATTTTTGATTATTTTTTAATCACTGAAATTTTTTCTTTCTCTGCATTTATTTTTCTCTCAAATAAAATCAAAGTGTCGATCGACTGAGTCTGTGTGACTTATTGCTGTTCTTCAGTTCGTTGAAGTTAAAGAAGTTTGAGGTACCGCTATTTCTTTAACAGGTTTAATCCGTTTTATCTTGGGAGAAATT</genome_strand>
        <mrna_strand>GGACATGTTCCTTGCTGAAAATGGCTATAAAAGGAAGTCAAATTTTG---ATTTTTTAAACACTGAAAATTTTTCTTTCTCTGCATTTATTTTTCTCTCAAATAAAATCAAAGTGTCGATCGACTGAGTCTGTGTGACTTGTTGTTGTTCTTAAGTTCGTTGAAGTTAAAGAAGTTTGAGGTACCGCTATTTCTTTAACAGGTTTAATCCGTTTTATCTTGAGAGAAATT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0323A14-r86Tr/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E720345" ref_strand="+" ref_description="SGN-E720345 [FC10CC01]">
      <seq>aaagagaatctagagagagaaaacagaaacccatttcccagaaagaacacaaaaatagaaatggcaacttcaacccagttcccggacgattttcggtgcccgatttcccttgaaattatgtccgacccggttattctgtcgtcgggtcacaccttcgaccgctcttcaatccaacggtgggtagactccggccaccggacttgcccgattaccaagctacccatttccgacccggtttctctcatccctaatcatgcccttcggagtctcatttccaattataccctcgtctctttccccaaaccactcacataccctgaaccgcagtcccttattcaaacccttattgcttcttcttcttctaatttggattctaagctccactcgcttgaccaactcagtaagctttccaagcgtgatttggcgatccgaaggaaactcaccgagtcgggcgctgtatctgctcttctcaattgcgttaactcggatgatgactcgggtggtttgcaggagaaagcgcttcatttgttgttgaatttgagcttggatgatgataacaaagtggggttggtggcaaaaggggttgtggggaaagtggtctcctctttacgaagaggtgctggaaactcgagggcggtggcggccacggttttgacgagtttagcggtggtggaagtgaataaggcaaccattggggcatacccagatgcaattccagggttaatttcgctgctttggg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0323A14-r86Tr/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0323A14.3" temp_strand="+" temp_description="C02HBa0323A14.3  AC215439.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0323A14 sequenced_by:kribb upload_account_name:korea">
        <position start="111470" stop="112808"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="111770" g_stop="112508" g_length="739"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="739" r_length="739" r_score="0.997"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0323A14.3" gen_strand="+" ref_id="SGN-E720345" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>739</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0323A14.3" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E720345" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="111770" e_stop="112508"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAGAGAATCTAGAGAGAGAAAACAGAAACCCATTTCCCAGAAAGAACACAAAAATAGAAATGGCAACTTCAACCCAGTTCCCGGACGATTTTCGGTGCCCGATTTCCCTTGAAATTATGTCCGACCCGGTTATTCTGTCGTCGGGTCACACCTTCGACCGCTCTTCAATCCAACGGTGGGTAGACTCCGGCCACCGGACTTGCCCGATTACCAAGCTACCCATTTCCGACCCGGTTTCTCTCATCCCTAATCATGCCCTTCGGAGTCTCATTTCCAATTATACCCTCGTCTCTTTCCCCAAACCACTCACATACCCTGAACCGCAGTCCCTTATTCAAACCCTTATTGCTTCTTCTTCTTCTAATTTGGATTCTAAGCTCCACTCGCTTGACCAACTCAGTAAGCTTTCCAAGCGTGATTTGGCGATCCGAAGGAAACTCACCGAGTCGGGCGCTGTATCTGCTCTTCTCAATTGCGTTAACTCGGATGATGACTCGGGTGGTTTGCAGGAGAAAGCGCTTCATTTGTTGTTGAATTTGAGCTTGGATGATGATAACAAAGTGGGGTTGGTGGCAGAAGGGGTTGTGGGGAAAGTGGTCTCCTCTTTACGAAGAGGTGCTGGAGACTCGAGGGCGGTGGCGGCCACGGTTTTGACGAGTTTAGCGGTGGTGGAAGTGAATAAGGCAACCATTGGGGCATACCCAGATGCAATTCCAGGGTTAATTTCGCTGCTTTGGG</genome_strand>
        <mrna_strand>AAAGAGAATCTAGAGAGAGAAAACAGAAACCCATTTCCCAGAAAGAACACAAAAATAGAAATGGCAACTTCAACCCAGTTCCCGGACGATTTTCGGTGCCCGATTTCCCTTGAAATTATGTCCGACCCGGTTATTCTGTCGTCGGGTCACACCTTCGACCGCTCTTCAATCCAACGGTGGGTAGACTCCGGCCACCGGACTTGCCCGATTACCAAGCTACCCATTTCCGACCCGGTTTCTCTCATCCCTAATCATGCCCTTCGGAGTCTCATTTCCAATTATACCCTCGTCTCTTTCCCCAAACCACTCACATACCCTGAACCGCAGTCCCTTATTCAAACCCTTATTGCTTCTTCTTCTTCTAATTTGGATTCTAAGCTCCACTCGCTTGACCAACTCAGTAAGCTTTCCAAGCGTGATTTGGCGATCCGAAGGAAACTCACCGAGTCGGGCGCTGTATCTGCTCTTCTCAATTGCGTTAACTCGGATGATGACTCGGGTGGTTTGCAGGAGAAAGCGCTTCATTTGTTGTTGAATTTGAGCTTGGATGATGATAACAAAGTGGGGTTGGTGGCAAAAGGGGTTGTGGGGAAAGTGGTCTCCTCTTTACGAAGAGGTGCTGGAAACTCGAGGGCGGTGGCGGCCACGGTTTTGACGAGTTTAGCGGTGGTGGAAGTGAATAAGGCAACCATTGGGGCATACCCAGATGCAATTCCAGGGTTAATTTCGCTGCTTTGGG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0323A14-r86Tr/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E366123" ref_strand="+" ref_description="SGN-E366123 [cLPT-15-H7]">
      <seq>agaaacccatttcccagaaagaacaaaaatagaaatggcaacttcaacccagttcccggacgattttcggtgcccgatttcccttgaaattatgtccgacccggttattctgtcgtcgggtcacaccttcgaccgctcttcaatccaacggtgggtagactccggccaccggacttgcccgattaccaagctacccatttccgacccggtttctctcatccctaatcatgcccttcggagtctcatttccaattataccctcgtctctttccccaaaccactctcgtaccctgaaccgcagtcccttattcaaacccttattgcttcttcttcttctaatttggattctaagctcaactcgcttgaccaactcagtaagctttccaagcgtgatttggcgatccgaaggaaactcaccgagtcaggcgctgtatctgctcttctcaattgtgttaactcggatgatgactcgggtggtttgcaggagaaagcgcttcatttgttgttgaatttgagcttggatgatgataac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0323A14-r86Tr/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0323A14.3" temp_strand="+" temp_description="C02HBa0323A14.3  AC215439.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0323A14 sequenced_by:kribb upload_account_name:korea">
        <position start="111494" stop="112627"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="111794" g_stop="112327" g_length="534"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="532" r_length="532" r_score="0.987"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0323A14.3" gen_strand="+" ref_id="SGN-E366123" ref_strand="+">
        <total_alignment_score>0.987</total_alignment_score>
        <cumulative_length_of_scored_exons>534</cumulative_length_of_scored_exons>
        <coverage percentage="1.004" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0323A14.3" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E366123" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="111794" e_stop="112327"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGAAACCCATTTCCCAGAAAGAACACAAAAATAGAAATGGCAACTTCAACCCAGTTCCCGGACGATTTTCGGTGCCCGATTTCCCTTGAAATTATGTCCGACCCGGTTATTCTGTCGTCGGGTCACACCTTCGACCGCTCTTCAATCCAACGGTGGGTAGACTCCGGCCACCGGACTTGCCCGATTACCAAGCTACCCATTTCCGACCCGGTTTCTCTCATCCCTAATCATGCCCTTCGGAGTCTCATTTCCAATTATACCCTCGTCTCTTTCCCCAAACCACTCACATACCCTGAACCGCAGTCCCTTATTCAAACCCTTATTGCTTCTTCTTCTTCTAATTTGGATTCTAAGCTCCACTCGCTTGACCAACTCAGTAAGCTTTCCAAGCGTGATTTGGCGATCCGAAGGAAACTCACCGAGTCGGGCGCTGTATCTGCTCTTCTCAATTGCGTTAACTCGGATGATGACTCGGGTGGTTTGCAGGAGAAAGCGCTTCATTTGTTGTTGAATTTGAGCTTGGATGATGATAAC</genome_strand>
        <mrna_strand>AGAAACCCATTTCCCAGAAAG-A-ACAAAAATAGAAATGGCAACTTCAACCCAGTTCCCGGACGATTTTCGGTGCCCGATTTCCCTTGAAATTATGTCCGACCCGGTTATTCTGTCGTCGGGTCACACCTTCGACCGCTCTTCAATCCAACGGTGGGTAGACTCCGGCCACCGGACTTGCCCGATTACCAAGCTACCCATTTCCGACCCGGTTTCTCTCATCCCTAATCATGCCCTTCGGAGTCTCATTTCCAATTATACCCTCGTCTCTTTCCCCAAACCACTCTCGTACCCTGAACCGCAGTCCCTTATTCAAACCCTTATTGCTTCTTCTTCTTCTAATTTGGATTCTAAGCTCAACTCGCTTGACCAACTCAGTAAGCTTTCCAAGCGTGATTTGGCGATCCGAAGGAAACTCACCGAGTCAGGCGCTGTATCTGCTCTTCTCAATTGTGTTAACTCGGATGATGACTCGGGTGGTTTGCAGGAGAAAGCGCTTCATTTGTTGTTGAATTTGAGCTTGGATGATGATAAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0323A14-r86Tr/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E539325" ref_strand="+" ref_description="SGN-E539325 [TUS-59-A10]">
      <seq>tttcccagaaagaacacaaaaatagaaatggcaacttcaacccagttcccggacgattttcggtgcccgatttcccttgaaattatgtccgacccggttattctgtcgtcgggtcacaccttcgaccgctcttcaatccaacggtgggtagactccggccaccggacttgcccgattaccaagctacccatttccgacccggtttctctcatccctaatcatgcccttcggagtctcatttccaattataccctcgtctctttccccaaaccactcacataccctgaaccgcagtcccttattcaaacccttattgcttcttcttcttctaatttggattctaagctccactcgcttgaccaactcagtaagctttccaagcgtgatttggcgatccgaaggaaactcaccgagtcgggcgctgtatctgctcttctcaattgcgttaactcggatgatgactcgggtggtttgcaggagaaagcgcttcatttgttgttgaatttgagcttggatgatgataacaaagtggggttggtggcagaaggggttgtgggggaaagtggtctcctctttacgaagaggtgctggagactcgagggcggtggcggccacggttttgacgagtttagcggtggtggaagtgaataaggcaaccattggggcatacccagatgcaattccagggttaatttcgctgctttggggtggcagcggtagagagagaaaggaagctgctactgctctctacacgctgtgctctttc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0323A14-r86Tr/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0323A14.3" temp_strand="+" temp_description="C02HBa0323A14.3  AC215439.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0323A14 sequenced_by:kribb upload_account_name:korea">
        <position start="111503" stop="112867"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="111803" g_stop="112567" g_length="765"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="766" r_length="766" r_score="0.997"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0323A14.3" gen_strand="+" ref_id="SGN-E539325" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>765</cumulative_length_of_scored_exons>
        <coverage percentage="0.999" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0323A14.3" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E539325" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="111803" e_stop="112567"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTCCCAGAAAGAACACAAAAATAGAAATGGCAACTTCAACCCAGTTCCCGGACGATTTTCGGTGCCCGATTTCCCTTGAAATTATGTCCGACCCGGTTATTCTGTCGTCGGGTCACACCTTCGACCGCTCTTCAATCCAACGGTGGGTAGACTCCGGCCACCGGACTTGCCCGATTACCAAGCTACCCATTTCCGACCCGGTTTCTCTCATCCCTAATCATGCCCTTCGGAGTCTCATTTCCAATTATACCCTCGTCTCTTTCCCCAAACCACTCACATACCCTGAACCGCAGTCCCTTATTCAAACCCTTATTGCTTCTTCTTCTTCTAATTTGGATTCTAAGCTCCACTCGCTTGACCAACTCAGTAAGCTTTCCAAGCGTGATTTGGCGATCCGAAGGAAACTCACCGAGTCGGGCGCTGTATCTGCTCTTCTCAATTGCGTTAACTCGGATGATGACTCGGGTGGTTTGCAGGAGAAAGCGCTTCATTTGTTGTTGAATTTGAGCTTGGATGATGATAACAAAGTGGGGTTGGTGGCAGAAGGGGTTGT-GGGGAAAGTGGTCTCCTCTTTACGAAGAGGTGCTGGAGACTCGAGGGCGGTGGCGGCCACGGTTTTGACGAGTTTAGCGGTGGTGGAAGTGAATAAGGCAACCATTGGGGCATACCCAGATGCAATTCCAGGGTTAATTTCGCTGCTTTGGGGTGGCAGCGGTAGAGAGAGAAAGGAAGCTGCTACTGCTCTCTACACGCTGTGCTCTTTC</genome_strand>
        <mrna_strand>TTTCCCAGAAAGAACACAAAAATAGAAATGGCAACTTCAACCCAGTTCCCGGACGATTTTCGGTGCCCGATTTCCCTTGAAATTATGTCCGACCCGGTTATTCTGTCGTCGGGTCACACCTTCGACCGCTCTTCAATCCAACGGTGGGTAGACTCCGGCCACCGGACTTGCCCGATTACCAAGCTACCCATTTCCGACCCGGTTTCTCTCATCCCTAATCATGCCCTTCGGAGTCTCATTTCCAATTATACCCTCGTCTCTTTCCCCAAACCACTCACATACCCTGAACCGCAGTCCCTTATTCAAACCCTTATTGCTTCTTCTTCTTCTAATTTGGATTCTAAGCTCCACTCGCTTGACCAACTCAGTAAGCTTTCCAAGCGTGATTTGGCGATCCGAAGGAAACTCACCGAGTCGGGCGCTGTATCTGCTCTTCTCAATTGCGTTAACTCGGATGATGACTCGGGTGGTTTGCAGGAGAAAGCGCTTCATTTGTTGTTGAATTTGAGCTTGGATGATGATAACAAAGTGGGGTTGGTGGCAGAAGGGGTTGTGGGGGAAAGTGGTCTCCTCTTTACGAAGAGGTGCTGGAGACTCGAGGGCGGTGGCGGCCACGGTTTTGACGAGTTTAGCGGTGGTGGAAGTGAATAAGGCAACCATTGGGGCATACCCAGATGCAATTCCAGGGTTAATTTCGCTGCTTTGGGGTGGCAGCGGTAGAGAGAGAAAGGAAGCTGCTACTGCTCTCTACACGCTGTGCTCTTTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0323A14-r86Tr/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E283949" ref_strand="+" ref_description="SGN-E283949 [cLER-13-J3]">
      <seq>ttcccagaaagaacacaaaaatagaaatggcaacttcaacccagttcccggacgattttcggtgcccgatttcccttgaaattatgtccgacccggttattctgtcgtcgggtcacaccttcgaccgctcttcaatccaacggtgggtagactccggccaccggacttgcccgattaccaagctacccatttccgacccggtttctctcatccctaatcatgcccttcggagtctcatttccaattataccctcgtctctttccccaaaccactcacataccctgaaccgcagtcccttattcaaacccttattgcttcttcttcttctaatttggattctaagctccactcgcttgaccaactcagtaagctttccaagcgtgatttggcgatccgaaggaaactcaccgagtcgggcgctgtatctgctcttctcaattgcgttaactc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0323A14-r86Tr/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0323A14.3" temp_strand="+" temp_description="C02HBa0323A14.3  AC215439.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0323A14 sequenced_by:kribb upload_account_name:korea">
        <position start="111504" stop="112554"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="111804" g_stop="112254" g_length="451"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="451" r_length="451" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0323A14.3" gen_strand="+" ref_id="SGN-E283949" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>451</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0323A14.3" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E283949" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="111804" e_stop="112254"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTCCCAGAAAGAACACAAAAATAGAAATGGCAACTTCAACCCAGTTCCCGGACGATTTTCGGTGCCCGATTTCCCTTGAAATTATGTCCGACCCGGTTATTCTGTCGTCGGGTCACACCTTCGACCGCTCTTCAATCCAACGGTGGGTAGACTCCGGCCACCGGACTTGCCCGATTACCAAGCTACCCATTTCCGACCCGGTTTCTCTCATCCCTAATCATGCCCTTCGGAGTCTCATTTCCAATTATACCCTCGTCTCTTTCCCCAAACCACTCACATACCCTGAACCGCAGTCCCTTATTCAAACCCTTATTGCTTCTTCTTCTTCTAATTTGGATTCTAAGCTCCACTCGCTTGACCAACTCAGTAAGCTTTCCAAGCGTGATTTGGCGATCCGAAGGAAACTCACCGAGTCGGGCGCTGTATCTGCTCTTCTCAATTGCGTTAACTC</genome_strand>
        <mrna_strand>TTCCCAGAAAGAACACAAAAATAGAAATGGCAACTTCAACCCAGTTCCCGGACGATTTTCGGTGCCCGATTTCCCTTGAAATTATGTCCGACCCGGTTATTCTGTCGTCGGGTCACACCTTCGACCGCTCTTCAATCCAACGGTGGGTAGACTCCGGCCACCGGACTTGCCCGATTACCAAGCTACCCATTTCCGACCCGGTTTCTCTCATCCCTAATCATGCCCTTCGGAGTCTCATTTCCAATTATACCCTCGTCTCTTTCCCCAAACCACTCACATACCCTGAACCGCAGTCCCTTATTCAAACCCTTATTGCTTCTTCTTCTTCTAATTTGGATTCTAAGCTCCACTCGCTTGACCAACTCAGTAAGCTTTCCAAGCGTGATTTGGCGATCCGAAGGAAACTCACCGAGTCGGGCGCTGTATCTGCTCTTCTCAATTGCGTTAACTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0323A14-r86Tr/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E539322" ref_strand="+" ref_description="SGN-E539322 [TUS-59-A10](-)">
      <seq>ctcgagggcggtggcggccacggttttgacgagttaagcggtggtggaagtgaataaggcaaccattggggcatacccagatgcaattccagggttaatttcgctgctttggggtggcagcggtagagagagaaaggaagctgctactgctctctacacgctgtgctctttcccggataatcgggttcgggccgtgcagaaccaggctgttccagtactaattaagaatgctaatttaggcctagaaagatcagttgaggtattgggattattagcaaaatgtaaagagggtcgttatgaaatgtttaaatactgtgggttgttggatattttgataaaattcttgaaaaatgggtcttcaagagctgtgcaatatggtcttttgactatcagcttgctgtgtagttacagtgaaaggatgcgtgtgttggctgtaagagaaggggtgtttgagatttctgttgggttattacaagatgataatgagaaagtgagaagaaatgctaatagcttgattcaggttttacaagggcaaacattaagtctttgagatatgaatttggaaagtgttgattttgaatggattattggaagctttggagggtgaagaagaagaaggtgagtttttaggcttcctcataattatttttgttgaatagtttttctttgtacaaaaagattagaattttagggcaanaaaatgtgcatctctctttttctctatcaaaatctcttttgtttttttggttttatattatcaacataagaataagaatgaaaagacaaacatcaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0323A14-r86Tr/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0323A14.3" temp_strand="+" temp_description="C02HBa0323A14.3  AC215439.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0323A14 sequenced_by:kribb upload_account_name:korea">
        <position start="112096" stop="113487"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="112396" g_stop="113189" g_length="794"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="795" r_length="795" r_score="0.994"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0323A14.3" gen_strand="+" ref_id="SGN-E539322" ref_strand="+">
        <total_alignment_score>0.994</total_alignment_score>
        <cumulative_length_of_scored_exons>794</cumulative_length_of_scored_exons>
        <coverage percentage="0.990" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0323A14.3" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E539322" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="112396" e_stop="113189"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTCGAGGGCGGTGGCGGCCACGGTTTTGACGAGTTTAGCGGTGGTGGAAGTGAATAAGGCAACCATTGGGGCATACCCAGATGCAATTCCAGGGTTAATTTCGCTGCTTTGGGGTGGCAGCGGTAGAGAGAGAAAGGAAGCTGCTACTGCTCTCTACACGCTGTGCTCTTTCCCGGATAATCGGGTTCGGGCCGTGCAGAACCAGGCTGTTCCAGTACTAATTAAGAATGCTAATTTAGGCCTAGAAAGATCAGTTGAGGTATTGGGATTATTAGCAAAATGTAAAGAGGGTCGTTATGAAATGTTTAAATACTGTGGGTTGTTGGATATTTTGATAAAATTCTTGAAAAATGGGTCTTCAAGAGCTGTGCAATATGGTCTTTTGACTATCAGCTTGCTGTGTAGTTACAGTGAAAGGATGCGTGTGTTGGCTGTAAGAGAAGGGGTGTTTGAGATTTCTGTTGGGTTATTACAAGATGATAATGAGAAAGTGAGAAGAAATGCTAATAGCTTGATTCAGGTTTTACAAGGGCAAACATTAAGTCTTTGAGATATGAATTTGGAAAGTGTTGATTTTGAATGGATTATTGGAAGCTTTGGAGGGTGAAGAAGAAGAAGGTGAGTTTTTAGGCTTCCTCATAATTATTTTTGTTGAATAGTTTTTCTTTGTACAAAAAGATTAGAATTTTAGGGCAA-AAAATGTGCATCTCTCTTTTTCTCTATCAAAATCTCTTTTGTTTTTTTGGTTTTATATTATCAACATAAGAATAAGAATGAAAAGACAAACATCAATG</genome_strand>
        <mrna_strand>CTCGAGGGCGGTGGCGGCCACGGTTTTGACGAGTTAAGCGGTGGTGGAAGTGAATAAGGCAACCATTGGGGCATACCCAGATGCAATTCCAGGGTTAATTTCGCTGCTTTGGGGTGGCAGCGGTAGAGAGAGAAAGGAAGCTGCTACTGCTCTCTACACGCTGTGCTCTTTCCCGGATAATCGGGTTCGGGCCGTGCAGAACCAGGCTGTTCCAGTACTAATTAAGAATGCTAATTTAGGCCTAGAAAGATCAGTTGAGGTATTGGGATTATTAGCAAAATGTAAAGAGGGTCGTTATGAAATGTTTAAATACTGTGGGTTGTTGGATATTTTGATAAAATTCTTGAAAAATGGGTCTTCAAGAGCTGTGCAATATGGTCTTTTGACTATCAGCTTGCTGTGTAGTTACAGTGAAAGGATGCGTGTGTTGGCTGTAAGAGAAGGGGTGTTTGAGATTTCTGTTGGGTTATTACAAGATGATAATGAGAAAGTGAGAAGAAATGCTAATAGCTTGATTCAGGTTTTACAAGGGCAAACATTAAGTCTTTGAGATATGAATTTGGAAAGTGTTGATTTTGAATGGATTATTGGAAGCTTTGGAGGGTGAAGAAGAAGAAGGTGAGTTTTTAGGCTTCCTCATAATTATTTTTGTTGAATAGTTTTTCTTTGTACAAAAAGATTAGAATTTTAGGGCAANAAAATGTGCATCTCTCTTTTTCTCTATCAAAATCTCTTTTGTTTTTTTGGTTTTATATTATCAACATAAGAATAAGAATGAAAAGACAAACATCAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0323A14-r86Tr/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E329240" ref_strand="+" ref_description="SGN-E329240 [cTOD-2-K12]">
      <seq>agagaactagtctctttcttttctattctattccaacaacaactcattcatccacctactactttccctttcaaatggcaaccaaagtctacattgtttactactccatgtatggacatgttgagaagctagcacaagagataaagaaaggagccgcatcagttgaaagcgtagaagccaaactatggcaggtaccagaaactctttcagaagaggttcttggaaagatgggtggaccagcaaaaggcgatgcaccaattatcacacccaatgaccttgctgaagctgatggctttgtgtttggattcccaacaagatttgggatgatggctgctcagttcaaggcatttcttgatgccactggtggtctctggagaactcagcagcttgcaggcaagccagcgggccttttctacagtactggctctcaaagaggtggccaagagactactgcgttgactgcaattactcagcttgttcaccatggaatgatctttgt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0323A14-r86Tr/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0323A14.3" temp_strand="+" temp_description="C02HBa0323A14.3  AC215439.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0323A14 sequenced_by:kribb upload_account_name:korea">
        <position start="122304" stop="125058"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="122599" g_stop="122695" g_length="97"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="97" r_length="97" r_score="0.938"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="122696" i_stop="123812" i_length="1117">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.894" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="123813" g_stop="123906" g_length="94"/>
          <reference_exon_boundary r_type="cDNA" r_start="98" r_stop="191" r_length="94" r_score="0.989"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="123907" i_stop="124352" i_length="446">
            <donor d_prob="0.998" d_score="0.98"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="124353" g_stop="124613" g_length="261"/>
          <reference_exon_boundary r_type="cDNA" r_start="192" r_stop="454" r_length="263" r_score="0.981"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="124614" i_stop="124713" i_length="100">
            <donor d_prob="0.956" d_score="0.98"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="124714" g_stop="124758" g_length="45"/>
          <reference_exon_boundary r_type="cDNA" r_start="455" r_stop="499" r_length="45" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0323A14.3" gen_strand="+" ref_id="SGN-E329240" ref_strand="+">
        <total_alignment_score>0.973</total_alignment_score>
        <cumulative_length_of_scored_exons>497</cumulative_length_of_scored_exons>
        <coverage percentage="0.996" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0323A14.3" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E329240" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="122599" e_stop="122695"/>
          <exon e_start="123813" e_stop="123906"/>
          <exon e_start="124353" e_stop="124613"/>
          <exon e_start="124714" e_stop="124758"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCATCACCATTCTCTTTCTTTTCTATTCTATTCCAACAACAACTCATTCATCCACCTACTACTTTCCCTTTCAAATGGCAACCAAAGTCTACATTGTGTAAGTACTCTATCTTTTTCTACATTTATATCTTTCTTGTTTTTTTTTTTTTATATATGTTTTGAGTTTGGGGTTCTCTGTTTTGATGTTTAGAGTGAAATGATTGTGGGTATGATTTATTTTTTGTTAATTTGATTCTGGGCTGATAGATTCTTGGTTCTTGATTTTTGCCATGTCTGTGTAAAGACTCTGTCTTTATGTACTGTTCTTATTATATAAATGGGAATATGGTCCTAAGTCTCTGCAAGATTCGTTTTCCAATGATTAATTGAAGAGATTGTGTGGGAAGGTACCAGTTGTTTCCAGTTTTTGTTGGGTTGATCTAAAGGTAGTTTATTGGAAGATTGTTATGAAAATGATATAGCCAATTAATTGTTACAGGCGTTGTTGGTTAGGTATTCTTTTTTGTCTTTTTATGAAAAAATGACATTCTTGAAATTAAAAAAATAATATGCTTCTACAAGTGTTTGTTGTCTTGATCTAAGATAGGAAAATATTTGCTTACTAAAAGGTTTTTATGAAAAATGATTTACCAACTAATTCACTGGGAATTGGTCAGTTGCTCTATTGCTAGTCTTTATGAGATGACATTCTTGAAATTGAATAATATTAACTTGAAGTTCCAAGATGGAGTTGTCGATATTACCATTGGTGCTAAATGATTTTGTTGATTAGAATCAACTATCATATAAATTTATGGCCTGAACTCCATAGTCTTTTCAAGATTCCTATTGGTAAAAGAAAATCTAAAAATTTCCAGAACATGTCTCATTGGATGATTTGTGTTTTATTGAGAACTAAGTTCTGGCTTGTGCCATCTTTTGTTCCTGTTTTATCTCTAGAAGACTTCTGTGAAGCTGGATTCTAGTGCCTGATGTCCTCATCCGGAATGTATTTGGTTTTATTTTACTGGATATCTTGCGACTGTTCCAATCTGATCTGTGATTCTTATCCAATTTATAGTCAACTTTTGTGTGTTTCATTTGTGTATCTGATGCTGTGAAGTCTTATAAACCCCCCAAAAATTGTCTCCAAAAGTAGAATGGTTTGTATGATCTATTTGATCTTTATGCTTGGGGCTTGTAAAGCTAATGGTGAAAAGTATAAATGAATGCAGTTACTACTCCATGTATGGACATGTTGAGAAGCTAGCACAAGAGATAAAGAAAGGAGCCGCATCAGTTGAAGGCGTAGAAGCCAAACTATGGCAGGTCTGTTTACATTTCATTTTGAGTTGTTATTAATGTGAATGTGTTAGAGAATTTGGTATCCCTGAGAATTGAAGAAATTATGTGAGTTTGACTTTGCCAACGGAATGTCTCCTAAAGTGATATACATTAATTATTGGAAGTGTGGAATCTCTAGAGTCCTAGTCCTTTCCTTAAAATCCTGCTGAGAAATTATTGCCATGACATTTGATGTAGTTATTCCATGTTTGACTACTAATTGTTTAGTGGAGTCAATGCATTTAGACAAAGAAAACCATTTAGTTGACTTGTCTTTTCTCAAATTACTTGTGACTCACTTTTCCTTAATTTCTATGATTGATTTCATATACTGAACAGTGTACCTTTATAGGGCTTTGGAGATGAAAGGAGAAAAAACTAATGAACGTGTATCGTTACTGTGTTCTGTTGTTGATTTGTGAATGGCACAGGTACCAGAAACTCTTTCAGAAGAGGTTCTTGGAAAGATGGGTGGACCAGCAAAA-GCGATGC-CCAATTATCACACCCAATGACCTTGCTGAAGCTGATGGCTTTGTGTTTGGATTCCCAACAAGATTTGGGATGATGGCTGCTCAGTTCAAGGCATTTCTTGATGCCACTGGTGGTCTCTGGAGAACTCAGCAGCTTGCAGGCAAGCCAGCGGGCCTTTTCTACAGTACTGGCTCTCAAGGAGGTGGCCAAGAGACTACTGCGTTAGTCCCTTCTCCTCAAAAAACTAACACATTTTGAGCTTGACTTGTGATTTGAAGATTCTAACTGAAAATTTTACATTAAAACTCAATAAATCTGCAGGTTGACTGCAATTACTCAGCTTGTTCACCATGGAATGATCTTTGT</genome_strand>
        <mrna_strand>AGAGAACTAGTCTCTTTCTTTTCTATTCTATTCCAACAACAACTCATTCATCCACCTACTACTTTCCCTTTCAAATGGCAACCAAAGTCTACATTGT.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTACTACTCCATGTATGGACATGTTGAGAAGCTAGCACAAGAGATAAAGAAAGGAGCCGCATCAGTTGAAAGCGTAGAAGCCAAACTATGGCAG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................GTACCAGAAACTCTTTCAGAAGAGGTTCTTGGAAAGATGGGTGGACCAGCAAAAGGCGATGCACCAATTATCACACCCAATGACCTTGCTGAAGCTGATGGCTTTGTGTTTGGATTCCCAACAAGATTTGGGATGATGGCTGCTCAGTTCAAGGCATTTCTTGATGCCACTGGTGGTCTCTGGAGAACTCAGCAGCTTGCAGGCAAGCCAGCGGGCCTTTTCTACAGTACTGGCTCTCAAAGAGGTGGCCAAGAGACTACTGC....................................................................................................GTTGACTGCAATTACTCAGCTTGTTCACCATGGAATGATCTTTGT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0323A14-r86Tr/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E311071" ref_strand="+" ref_description="SGN-E311071 [cLEZ-17-J6]">
      <seq>cattctctttcttttctattctattccaacaacaactcattcatccacctactactttccctttcaaatggcaaccaaagtctacattgtttactactccatgtatggacatgttgagaagctagcacaagagataaagaaaggagccgcatcagttgaaggcgtagaagccaaactatggcaggtaccagaaactctttcagaagaggttcttggaaagatgggtggaccagcaaaaggcgatgcaccaattatcacacccaatgaccttgctgaagctgatggctttgtgtttggattcccaacaagatttgggatgatggctgctcagttcaaggcatttcttgatgccactggtggtctctggagaactcagcagcttgcaggcaagccagcgggccttttctacagtactggctctcaaggaggtggccaagagactactgcgttgactgcaattactcagcttgttcaccatggaatgatctttgtcccgattggttacacatttggtgctggcatgttcg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0323A14-r86Tr/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0323A14.3" temp_strand="+" temp_description="C02HBa0323A14.3  AC215439.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0323A14 sequenced_by:kribb upload_account_name:korea">
        <position start="122306" stop="125093"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="122606" g_stop="122695" g_length="90"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="90" r_length="90" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="122696" i_stop="123812" i_length="1117">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.894" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="123813" g_stop="123906" g_length="94"/>
          <reference_exon_boundary r_type="cDNA" r_start="91" r_stop="184" r_length="94" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="123907" i_stop="124352" i_length="446">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="124353" g_stop="124613" g_length="261"/>
          <reference_exon_boundary r_type="cDNA" r_start="185" r_stop="447" r_length="263" r_score="0.985"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="124614" i_stop="124713" i_length="100">
            <donor d_prob="0.956" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="124714" g_stop="124793" g_length="80"/>
          <reference_exon_boundary r_type="cDNA" r_start="448" r_stop="527" r_length="80" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0323A14.3" gen_strand="+" ref_id="SGN-E311071" ref_strand="+">
        <total_alignment_score>0.992</total_alignment_score>
        <cumulative_length_of_scored_exons>525</cumulative_length_of_scored_exons>
        <coverage percentage="0.996" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0323A14.3" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E311071" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="122606" e_stop="122695"/>
          <exon e_start="123813" e_stop="123906"/>
          <exon e_start="124353" e_stop="124613"/>
          <exon e_start="124714" e_stop="124793"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CATTCTCTTTCTTTTCTATTCTATTCCAACAACAACTCATTCATCCACCTACTACTTTCCCTTTCAAATGGCAACCAAAGTCTACATTGTGTAAGTACTCTATCTTTTTCTACATTTATATCTTTCTTGTTTTTTTTTTTTTATATATGTTTTGAGTTTGGGGTTCTCTGTTTTGATGTTTAGAGTGAAATGATTGTGGGTATGATTTATTTTTTGTTAATTTGATTCTGGGCTGATAGATTCTTGGTTCTTGATTTTTGCCATGTCTGTGTAAAGACTCTGTCTTTATGTACTGTTCTTATTATATAAATGGGAATATGGTCCTAAGTCTCTGCAAGATTCGTTTTCCAATGATTAATTGAAGAGATTGTGTGGGAAGGTACCAGTTGTTTCCAGTTTTTGTTGGGTTGATCTAAAGGTAGTTTATTGGAAGATTGTTATGAAAATGATATAGCCAATTAATTGTTACAGGCGTTGTTGGTTAGGTATTCTTTTTTGTCTTTTTATGAAAAAATGACATTCTTGAAATTAAAAAAATAATATGCTTCTACAAGTGTTTGTTGTCTTGATCTAAGATAGGAAAATATTTGCTTACTAAAAGGTTTTTATGAAAAATGATTTACCAACTAATTCACTGGGAATTGGTCAGTTGCTCTATTGCTAGTCTTTATGAGATGACATTCTTGAAATTGAATAATATTAACTTGAAGTTCCAAGATGGAGTTGTCGATATTACCATTGGTGCTAAATGATTTTGTTGATTAGAATCAACTATCATATAAATTTATGGCCTGAACTCCATAGTCTTTTCAAGATTCCTATTGGTAAAAGAAAATCTAAAAATTTCCAGAACATGTCTCATTGGATGATTTGTGTTTTATTGAGAACTAAGTTCTGGCTTGTGCCATCTTTTGTTCCTGTTTTATCTCTAGAAGACTTCTGTGAAGCTGGATTCTAGTGCCTGATGTCCTCATCCGGAATGTATTTGGTTTTATTTTACTGGATATCTTGCGACTGTTCCAATCTGATCTGTGATTCTTATCCAATTTATAGTCAACTTTTGTGTGTTTCATTTGTGTATCTGATGCTGTGAAGTCTTATAAACCCCCCAAAAATTGTCTCCAAAAGTAGAATGGTTTGTATGATCTATTTGATCTTTATGCTTGGGGCTTGTAAAGCTAATGGTGAAAAGTATAAATGAATGCAGTTACTACTCCATGTATGGACATGTTGAGAAGCTAGCACAAGAGATAAAGAAAGGAGCCGCATCAGTTGAAGGCGTAGAAGCCAAACTATGGCAGGTCTGTTTACATTTCATTTTGAGTTGTTATTAATGTGAATGTGTTAGAGAATTTGGTATCCCTGAGAATTGAAGAAATTATGTGAGTTTGACTTTGCCAACGGAATGTCTCCTAAAGTGATATACATTAATTATTGGAAGTGTGGAATCTCTAGAGTCCTAGTCCTTTCCTTAAAATCCTGCTGAGAAATTATTGCCATGACATTTGATGTAGTTATTCCATGTTTGACTACTAATTGTTTAGTGGAGTCAATGCATTTAGACAAAGAAAACCATTTAGTTGACTTGTCTTTTCTCAAATTACTTGTGACTCACTTTTCCTTAATTTCTATGATTGATTTCATATACTGAACAGTGTACCTTTATAGGGCTTTGGAGATGAAAGGAGAAAAAACTAATGAACGTGTATCGTTACTGTGTTCTGTTGTTGATTTGTGAATGGCACAGGTACCAGAAACTCTTTCAGAAGAGGTTCTTGGAAAGATGGGTGGACCAGCAAAA-GCGATGC-CCAATTATCACACCCAATGACCTTGCTGAAGCTGATGGCTTTGTGTTTGGATTCCCAACAAGATTTGGGATGATGGCTGCTCAGTTCAAGGCATTTCTTGATGCCACTGGTGGTCTCTGGAGAACTCAGCAGCTTGCAGGCAAGCCAGCGGGCCTTTTCTACAGTACTGGCTCTCAAGGAGGTGGCCAAGAGACTACTGCGTTAGTCCCTTCTCCTCAAAAAACTAACACATTTTGAGCTTGACTTGTGATTTGAAGATTCTAACTGAAAATTTTACATTAAAACTCAATAAATCTGCAGGTTGACTGCAATTACTCAGCTTGTTCACCATGGAATGATCTTTGTCCCGATTGGTTACACATTTGGTGCTGGCATGTTCG</genome_strand>
        <mrna_strand>CATTCTCTTTCTTTTCTATTCTATTCCAACAACAACTCATTCATCCACCTACTACTTTCCCTTTCAAATGGCAACCAAAGTCTACATTGT.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTACTACTCCATGTATGGACATGTTGAGAAGCTAGCACAAGAGATAAAGAAAGGAGCCGCATCAGTTGAAGGCGTAGAAGCCAAACTATGGCAG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................GTACCAGAAACTCTTTCAGAAGAGGTTCTTGGAAAGATGGGTGGACCAGCAAAAGGCGATGCACCAATTATCACACCCAATGACCTTGCTGAAGCTGATGGCTTTGTGTTTGGATTCCCAACAAGATTTGGGATGATGGCTGCTCAGTTCAAGGCATTTCTTGATGCCACTGGTGGTCTCTGGAGAACTCAGCAGCTTGCAGGCAAGCCAGCGGGCCTTTTCTACAGTACTGGCTCTCAAGGAGGTGGCCAAGAGACTACTGC....................................................................................................GTTGACTGCAATTACTCAGCTTGTTCACCATGGAATGATCTTTGTCCCGATTGGTTACACATTTGGTGCTGGCATGTTCG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0323A14-r86Tr/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E309132" ref_strand="+" ref_description="SGN-E309132 [cLEZ-1-K11]">
      <seq>tctttcttttctattctattccaacaacaactcattcatccacctactactttccctttcaaatggcaaccaaagtctacattgtttactactccatgtatggacatgttgagaagctagcacaagagataaagaaaggagccgcatcagttgaaggcgtagaagccaaactatggcaggtaccagaaactctttcagaagaggttcttggaaagatgggtggaccagcaaaaggcgatgcaccaattatcacacccaatgaccttgctgaagctgatggctttgtgtttggattcccaacaagatttgggatgatggctgctcagttcaaggcatttcttgatgccactggtggtctctggagaactcagcagcttgcaggcaagccagcgggccttttctacagtactggctctcaaggaggtggccaagagactactgcgttgactgcaattactcagcttgttcaccatggaatgatctttgtcccgattggttacacatttggtgctggcatgttcgagatggagaagattaaaggtggaagtccttacggtgcaggaacttttgctgg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0323A14-r86Tr/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0323A14.3" temp_strand="+" temp_description="C02HBa0323A14.3  AC215439.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0323A14 sequenced_by:kribb upload_account_name:korea">
        <position start="122311" stop="125145"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="122611" g_stop="122695" g_length="85"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="85" r_length="85" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="122696" i_stop="123812" i_length="1117">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.894" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="123813" g_stop="123906" g_length="94"/>
          <reference_exon_boundary r_type="cDNA" r_start="86" r_stop="179" r_length="94" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="123907" i_stop="124352" i_length="446">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="124353" g_stop="124613" g_length="261"/>
          <reference_exon_boundary r_type="cDNA" r_start="180" r_stop="442" r_length="263" r_score="0.985"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="124614" i_stop="124713" i_length="100">
            <donor d_prob="0.956" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="124714" g_stop="124845" g_length="132"/>
          <reference_exon_boundary r_type="cDNA" r_start="443" r_stop="574" r_length="132" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0323A14.3" gen_strand="+" ref_id="SGN-E309132" ref_strand="+">
        <total_alignment_score>0.993</total_alignment_score>
        <cumulative_length_of_scored_exons>572</cumulative_length_of_scored_exons>
        <coverage percentage="0.997" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0323A14.3" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E309132" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="122611" e_stop="122695"/>
          <exon e_start="123813" e_stop="123906"/>
          <exon e_start="124353" e_stop="124613"/>
          <exon e_start="124714" e_stop="124845"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCTTTCTTTTCTATTCTATTCCAACAACAACTCATTCATCCACCTACTACTTTCCCTTTCAAATGGCAACCAAAGTCTACATTGTGTAAGTACTCTATCTTTTTCTACATTTATATCTTTCTTGTTTTTTTTTTTTTATATATGTTTTGAGTTTGGGGTTCTCTGTTTTGATGTTTAGAGTGAAATGATTGTGGGTATGATTTATTTTTTGTTAATTTGATTCTGGGCTGATAGATTCTTGGTTCTTGATTTTTGCCATGTCTGTGTAAAGACTCTGTCTTTATGTACTGTTCTTATTATATAAATGGGAATATGGTCCTAAGTCTCTGCAAGATTCGTTTTCCAATGATTAATTGAAGAGATTGTGTGGGAAGGTACCAGTTGTTTCCAGTTTTTGTTGGGTTGATCTAAAGGTAGTTTATTGGAAGATTGTTATGAAAATGATATAGCCAATTAATTGTTACAGGCGTTGTTGGTTAGGTATTCTTTTTTGTCTTTTTATGAAAAAATGACATTCTTGAAATTAAAAAAATAATATGCTTCTACAAGTGTTTGTTGTCTTGATCTAAGATAGGAAAATATTTGCTTACTAAAAGGTTTTTATGAAAAATGATTTACCAACTAATTCACTGGGAATTGGTCAGTTGCTCTATTGCTAGTCTTTATGAGATGACATTCTTGAAATTGAATAATATTAACTTGAAGTTCCAAGATGGAGTTGTCGATATTACCATTGGTGCTAAATGATTTTGTTGATTAGAATCAACTATCATATAAATTTATGGCCTGAACTCCATAGTCTTTTCAAGATTCCTATTGGTAAAAGAAAATCTAAAAATTTCCAGAACATGTCTCATTGGATGATTTGTGTTTTATTGAGAACTAAGTTCTGGCTTGTGCCATCTTTTGTTCCTGTTTTATCTCTAGAAGACTTCTGTGAAGCTGGATTCTAGTGCCTGATGTCCTCATCCGGAATGTATTTGGTTTTATTTTACTGGATATCTTGCGACTGTTCCAATCTGATCTGTGATTCTTATCCAATTTATAGTCAACTTTTGTGTGTTTCATTTGTGTATCTGATGCTGTGAAGTCTTATAAACCCCCCAAAAATTGTCTCCAAAAGTAGAATGGTTTGTATGATCTATTTGATCTTTATGCTTGGGGCTTGTAAAGCTAATGGTGAAAAGTATAAATGAATGCAGTTACTACTCCATGTATGGACATGTTGAGAAGCTAGCACAAGAGATAAAGAAAGGAGCCGCATCAGTTGAAGGCGTAGAAGCCAAACTATGGCAGGTCTGTTTACATTTCATTTTGAGTTGTTATTAATGTGAATGTGTTAGAGAATTTGGTATCCCTGAGAATTGAAGAAATTATGTGAGTTTGACTTTGCCAACGGAATGTCTCCTAAAGTGATATACATTAATTATTGGAAGTGTGGAATCTCTAGAGTCCTAGTCCTTTCCTTAAAATCCTGCTGAGAAATTATTGCCATGACATTTGATGTAGTTATTCCATGTTTGACTACTAATTGTTTAGTGGAGTCAATGCATTTAGACAAAGAAAACCATTTAGTTGACTTGTCTTTTCTCAAATTACTTGTGACTCACTTTTCCTTAATTTCTATGATTGATTTCATATACTGAACAGTGTACCTTTATAGGGCTTTGGAGATGAAAGGAGAAAAAACTAATGAACGTGTATCGTTACTGTGTTCTGTTGTTGATTTGTGAATGGCACAGGTACCAGAAACTCTTTCAGAAGAGGTTCTTGGAAAGATGGGTGGACCAGCAAAA-GCGATGC-CCAATTATCACACCCAATGACCTTGCTGAAGCTGATGGCTTTGTGTTTGGATTCCCAACAAGATTTGGGATGATGGCTGCTCAGTTCAAGGCATTTCTTGATGCCACTGGTGGTCTCTGGAGAACTCAGCAGCTTGCAGGCAAGCCAGCGGGCCTTTTCTACAGTACTGGCTCTCAAGGAGGTGGCCAAGAGACTACTGCGTTAGTCCCTTCTCCTCAAAAAACTAACACATTTTGAGCTTGACTTGTGATTTGAAGATTCTAACTGAAAATTTTACATTAAAACTCAATAAATCTGCAGGTTGACTGCAATTACTCAGCTTGTTCACCATGGAATGATCTTTGTCCCGATTGGTTACACATTTGGTGCTGGCATGTTCGAGATGGAGAAGATTAAAGGTGGAAGTCCTTACGGTGCAGGAACTTTTGCTGG</genome_strand>
        <mrna_strand>TCTTTCTTTTCTATTCTATTCCAACAACAACTCATTCATCCACCTACTACTTTCCCTTTCAAATGGCAACCAAAGTCTACATTGT.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTACTACTCCATGTATGGACATGTTGAGAAGCTAGCACAAGAGATAAAGAAAGGAGCCGCATCAGTTGAAGGCGTAGAAGCCAAACTATGGCAG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................GTACCAGAAACTCTTTCAGAAGAGGTTCTTGGAAAGATGGGTGGACCAGCAAAAGGCGATGCACCAATTATCACACCCAATGACCTTGCTGAAGCTGATGGCTTTGTGTTTGGATTCCCAACAAGATTTGGGATGATGGCTGCTCAGTTCAAGGCATTTCTTGATGCCACTGGTGGTCTCTGGAGAACTCAGCAGCTTGCAGGCAAGCCAGCGGGCCTTTTCTACAGTACTGGCTCTCAAGGAGGTGGCCAAGAGACTACTGC....................................................................................................GTTGACTGCAATTACTCAGCTTGTTCACCATGGAATGATCTTTGTCCCGATTGGTTACACATTTGGTGCTGGCATGTTCGAGATGGAGAAGATTAAAGGTGGAAGTCCTTACGGTGCAGGAACTTTTGCTGG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0323A14-r86Tr/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E307400" ref_strand="+" ref_description="SGN-E307400 [cLEY-12-O21]">
      <seq>tttcttttctattctattccaacaacaactcattcatccacctactactttccctttcaaatggcaaccaaagtctacattgtttactactccatgtatggacatgttgagaagctagcacaagagataaagaaaggagccgcatcagttgaaggcgtagaagccaaactatggcaggtaccagaaactctttcagaagaggttcttggaaagatgggtggaccagcaaaaggcgatgcaccaattatcacacccaatgaccttgctgaagctgatggctttgtgtttggattcccaacaagatttgggatgatggctgctcagttcaaggcatttcttgatgccactggtggtctctggagaactcagcagcttgcaggcaagccagcgggccttttctacagtactggctctcaaggaggtggccaagagactactgcgttgactgcaattactcagcttgttcaccatggaatgatctttgt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0323A14-r86Tr/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0323A14.3" temp_strand="+" temp_description="C02HBa0323A14.3  AC215439.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0323A14 sequenced_by:kribb upload_account_name:korea">
        <position start="122313" stop="125058"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="122613" g_stop="122695" g_length="83"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="83" r_length="83" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="122696" i_stop="123812" i_length="1117">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.894" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="123813" g_stop="123906" g_length="94"/>
          <reference_exon_boundary r_type="cDNA" r_start="84" r_stop="177" r_length="94" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="123907" i_stop="124352" i_length="446">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="124353" g_stop="124613" g_length="261"/>
          <reference_exon_boundary r_type="cDNA" r_start="178" r_stop="440" r_length="263" r_score="0.985"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="124614" i_stop="124713" i_length="100">
            <donor d_prob="0.956" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="124714" g_stop="124758" g_length="45"/>
          <reference_exon_boundary r_type="cDNA" r_start="441" r_stop="485" r_length="45" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0323A14.3" gen_strand="+" ref_id="SGN-E307400" ref_strand="+">
        <total_alignment_score>0.991</total_alignment_score>
        <cumulative_length_of_scored_exons>483</cumulative_length_of_scored_exons>
        <coverage percentage="0.996" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0323A14.3" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E307400" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="122613" e_stop="122695"/>
          <exon e_start="123813" e_stop="123906"/>
          <exon e_start="124353" e_stop="124613"/>
          <exon e_start="124714" e_stop="124758"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTCTTTTCTATTCTATTCCAACAACAACTCATTCATCCACCTACTACTTTCCCTTTCAAATGGCAACCAAAGTCTACATTGTGTAAGTACTCTATCTTTTTCTACATTTATATCTTTCTTGTTTTTTTTTTTTTATATATGTTTTGAGTTTGGGGTTCTCTGTTTTGATGTTTAGAGTGAAATGATTGTGGGTATGATTTATTTTTTGTTAATTTGATTCTGGGCTGATAGATTCTTGGTTCTTGATTTTTGCCATGTCTGTGTAAAGACTCTGTCTTTATGTACTGTTCTTATTATATAAATGGGAATATGGTCCTAAGTCTCTGCAAGATTCGTTTTCCAATGATTAATTGAAGAGATTGTGTGGGAAGGTACCAGTTGTTTCCAGTTTTTGTTGGGTTGATCTAAAGGTAGTTTATTGGAAGATTGTTATGAAAATGATATAGCCAATTAATTGTTACAGGCGTTGTTGGTTAGGTATTCTTTTTTGTCTTTTTATGAAAAAATGACATTCTTGAAATTAAAAAAATAATATGCTTCTACAAGTGTTTGTTGTCTTGATCTAAGATAGGAAAATATTTGCTTACTAAAAGGTTTTTATGAAAAATGATTTACCAACTAATTCACTGGGAATTGGTCAGTTGCTCTATTGCTAGTCTTTATGAGATGACATTCTTGAAATTGAATAATATTAACTTGAAGTTCCAAGATGGAGTTGTCGATATTACCATTGGTGCTAAATGATTTTGTTGATTAGAATCAACTATCATATAAATTTATGGCCTGAACTCCATAGTCTTTTCAAGATTCCTATTGGTAAAAGAAAATCTAAAAATTTCCAGAACATGTCTCATTGGATGATTTGTGTTTTATTGAGAACTAAGTTCTGGCTTGTGCCATCTTTTGTTCCTGTTTTATCTCTAGAAGACTTCTGTGAAGCTGGATTCTAGTGCCTGATGTCCTCATCCGGAATGTATTTGGTTTTATTTTACTGGATATCTTGCGACTGTTCCAATCTGATCTGTGATTCTTATCCAATTTATAGTCAACTTTTGTGTGTTTCATTTGTGTATCTGATGCTGTGAAGTCTTATAAACCCCCCAAAAATTGTCTCCAAAAGTAGAATGGTTTGTATGATCTATTTGATCTTTATGCTTGGGGCTTGTAAAGCTAATGGTGAAAAGTATAAATGAATGCAGTTACTACTCCATGTATGGACATGTTGAGAAGCTAGCACAAGAGATAAAGAAAGGAGCCGCATCAGTTGAAGGCGTAGAAGCCAAACTATGGCAGGTCTGTTTACATTTCATTTTGAGTTGTTATTAATGTGAATGTGTTAGAGAATTTGGTATCCCTGAGAATTGAAGAAATTATGTGAGTTTGACTTTGCCAACGGAATGTCTCCTAAAGTGATATACATTAATTATTGGAAGTGTGGAATCTCTAGAGTCCTAGTCCTTTCCTTAAAATCCTGCTGAGAAATTATTGCCATGACATTTGATGTAGTTATTCCATGTTTGACTACTAATTGTTTAGTGGAGTCAATGCATTTAGACAAAGAAAACCATTTAGTTGACTTGTCTTTTCTCAAATTACTTGTGACTCACTTTTCCTTAATTTCTATGATTGATTTCATATACTGAACAGTGTACCTTTATAGGGCTTTGGAGATGAAAGGAGAAAAAACTAATGAACGTGTATCGTTACTGTGTTCTGTTGTTGATTTGTGAATGGCACAGGTACCAGAAACTCTTTCAGAAGAGGTTCTTGGAAAGATGGGTGGACCAGCAAAA-GCGATGC-CCAATTATCACACCCAATGACCTTGCTGAAGCTGATGGCTTTGTGTTTGGATTCCCAACAAGATTTGGGATGATGGCTGCTCAGTTCAAGGCATTTCTTGATGCCACTGGTGGTCTCTGGAGAACTCAGCAGCTTGCAGGCAAGCCAGCGGGCCTTTTCTACAGTACTGGCTCTCAAGGAGGTGGCCAAGAGACTACTGCGTTAGTCCCTTCTCCTCAAAAAACTAACACATTTTGAGCTTGACTTGTGATTTGAAGATTCTAACTGAAAATTTTACATTAAAACTCAATAAATCTGCAGGTTGACTGCAATTACTCAGCTTGTTCACCATGGAATGATCTTTGT</genome_strand>
        <mrna_strand>TTTCTTTTCTATTCTATTCCAACAACAACTCATTCATCCACCTACTACTTTCCCTTTCAAATGGCAACCAAAGTCTACATTGT.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTACTACTCCATGTATGGACATGTTGAGAAGCTAGCACAAGAGATAAAGAAAGGAGCCGCATCAGTTGAAGGCGTAGAAGCCAAACTATGGCAG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................GTACCAGAAACTCTTTCAGAAGAGGTTCTTGGAAAGATGGGTGGACCAGCAAAAGGCGATGCACCAATTATCACACCCAATGACCTTGCTGAAGCTGATGGCTTTGTGTTTGGATTCCCAACAAGATTTGGGATGATGGCTGCTCAGTTCAAGGCATTTCTTGATGCCACTGGTGGTCTCTGGAGAACTCAGCAGCTTGCAGGCAAGCCAGCGGGCCTTTTCTACAGTACTGGCTCTCAAGGAGGTGGCCAAGAGACTACTGC....................................................................................................GTTGACTGCAATTACTCAGCTTGTTCACCATGGAATGATCTTTGT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0323A14-r86Tr/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E309201" ref_strand="+" ref_description="SGN-E309201 [cLEZ-12-C11]">
      <seq>ttcttttctattctattccaacaacaactcattcatccacctactactttccctttcaaatggcaaccaaagtctacattgtttactactccatgtatggacatgttgagaagctagcacaagagataaagaaaggagccgcatcagttgaaggcgtagaagccaaactatggcaggtaccagaaactctttcagaagaggttcttggaaagatgggtggaccagcaaaaggcgatgcaccaattatcacacccaatgaccttgctgaagctgatggctttgtgtttggattcccaacaagatttgggatgatggctgctcagttcaaggcatttcttgatgccactggtggtctctggagaactcagcagcttgcaggcaagccagcgggccttttctacagtactggctctcaaggaggtggccaagagactactgcgttgactgcaattactcagcttgttcaccatggaatgatctttgtcccgattggttacacatttggtgctggcatgtt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0323A14-r86Tr/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0323A14.3" temp_strand="+" temp_description="C02HBa0323A14.3  AC215439.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0323A14 sequenced_by:kribb upload_account_name:korea">
        <position start="122314" stop="125091"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="122614" g_stop="122695" g_length="82"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="82" r_length="82" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="122696" i_stop="123812" i_length="1117">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.894" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="123813" g_stop="123906" g_length="94"/>
          <reference_exon_boundary r_type="cDNA" r_start="83" r_stop="176" r_length="94" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="123907" i_stop="124352" i_length="446">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="124353" g_stop="124613" g_length="261"/>
          <reference_exon_boundary r_type="cDNA" r_start="177" r_stop="439" r_length="263" r_score="0.985"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="124614" i_stop="124713" i_length="100">
            <donor d_prob="0.956" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="124714" g_stop="124791" g_length="78"/>
          <reference_exon_boundary r_type="cDNA" r_start="440" r_stop="517" r_length="78" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0323A14.3" gen_strand="+" ref_id="SGN-E309201" ref_strand="+">
        <total_alignment_score>0.992</total_alignment_score>
        <cumulative_length_of_scored_exons>515</cumulative_length_of_scored_exons>
        <coverage percentage="0.996" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0323A14.3" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E309201" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="122614" e_stop="122695"/>
          <exon e_start="123813" e_stop="123906"/>
          <exon e_start="124353" e_stop="124613"/>
          <exon e_start="124714" e_stop="124791"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTCTTTTCTATTCTATTCCAACAACAACTCATTCATCCACCTACTACTTTCCCTTTCAAATGGCAACCAAAGTCTACATTGTGTAAGTACTCTATCTTTTTCTACATTTATATCTTTCTTGTTTTTTTTTTTTTATATATGTTTTGAGTTTGGGGTTCTCTGTTTTGATGTTTAGAGTGAAATGATTGTGGGTATGATTTATTTTTTGTTAATTTGATTCTGGGCTGATAGATTCTTGGTTCTTGATTTTTGCCATGTCTGTGTAAAGACTCTGTCTTTATGTACTGTTCTTATTATATAAATGGGAATATGGTCCTAAGTCTCTGCAAGATTCGTTTTCCAATGATTAATTGAAGAGATTGTGTGGGAAGGTACCAGTTGTTTCCAGTTTTTGTTGGGTTGATCTAAAGGTAGTTTATTGGAAGATTGTTATGAAAATGATATAGCCAATTAATTGTTACAGGCGTTGTTGGTTAGGTATTCTTTTTTGTCTTTTTATGAAAAAATGACATTCTTGAAATTAAAAAAATAATATGCTTCTACAAGTGTTTGTTGTCTTGATCTAAGATAGGAAAATATTTGCTTACTAAAAGGTTTTTATGAAAAATGATTTACCAACTAATTCACTGGGAATTGGTCAGTTGCTCTATTGCTAGTCTTTATGAGATGACATTCTTGAAATTGAATAATATTAACTTGAAGTTCCAAGATGGAGTTGTCGATATTACCATTGGTGCTAAATGATTTTGTTGATTAGAATCAACTATCATATAAATTTATGGCCTGAACTCCATAGTCTTTTCAAGATTCCTATTGGTAAAAGAAAATCTAAAAATTTCCAGAACATGTCTCATTGGATGATTTGTGTTTTATTGAGAACTAAGTTCTGGCTTGTGCCATCTTTTGTTCCTGTTTTATCTCTAGAAGACTTCTGTGAAGCTGGATTCTAGTGCCTGATGTCCTCATCCGGAATGTATTTGGTTTTATTTTACTGGATATCTTGCGACTGTTCCAATCTGATCTGTGATTCTTATCCAATTTATAGTCAACTTTTGTGTGTTTCATTTGTGTATCTGATGCTGTGAAGTCTTATAAACCCCCCAAAAATTGTCTCCAAAAGTAGAATGGTTTGTATGATCTATTTGATCTTTATGCTTGGGGCTTGTAAAGCTAATGGTGAAAAGTATAAATGAATGCAGTTACTACTCCATGTATGGACATGTTGAGAAGCTAGCACAAGAGATAAAGAAAGGAGCCGCATCAGTTGAAGGCGTAGAAGCCAAACTATGGCAGGTCTGTTTACATTTCATTTTGAGTTGTTATTAATGTGAATGTGTTAGAGAATTTGGTATCCCTGAGAATTGAAGAAATTATGTGAGTTTGACTTTGCCAACGGAATGTCTCCTAAAGTGATATACATTAATTATTGGAAGTGTGGAATCTCTAGAGTCCTAGTCCTTTCCTTAAAATCCTGCTGAGAAATTATTGCCATGACATTTGATGTAGTTATTCCATGTTTGACTACTAATTGTTTAGTGGAGTCAATGCATTTAGACAAAGAAAACCATTTAGTTGACTTGTCTTTTCTCAAATTACTTGTGACTCACTTTTCCTTAATTTCTATGATTGATTTCATATACTGAACAGTGTACCTTTATAGGGCTTTGGAGATGAAAGGAGAAAAAACTAATGAACGTGTATCGTTACTGTGTTCTGTTGTTGATTTGTGAATGGCACAGGTACCAGAAACTCTTTCAGAAGAGGTTCTTGGAAAGATGGGTGGACCAGCAAAA-GCGATGC-CCAATTATCACACCCAATGACCTTGCTGAAGCTGATGGCTTTGTGTTTGGATTCCCAACAAGATTTGGGATGATGGCTGCTCAGTTCAAGGCATTTCTTGATGCCACTGGTGGTCTCTGGAGAACTCAGCAGCTTGCAGGCAAGCCAGCGGGCCTTTTCTACAGTACTGGCTCTCAAGGAGGTGGCCAAGAGACTACTGCGTTAGTCCCTTCTCCTCAAAAAACTAACACATTTTGAGCTTGACTTGTGATTTGAAGATTCTAACTGAAAATTTTACATTAAAACTCAATAAATCTGCAGGTTGACTGCAATTACTCAGCTTGTTCACCATGGAATGATCTTTGTCCCGATTGGTTACACATTTGGTGCTGGCATGTT</genome_strand>
        <mrna_strand>TTCTTTTCTATTCTATTCCAACAACAACTCATTCATCCACCTACTACTTTCCCTTTCAAATGGCAACCAAAGTCTACATTGT.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTACTACTCCATGTATGGACATGTTGAGAAGCTAGCACAAGAGATAAAGAAAGGAGCCGCATCAGTTGAAGGCGTAGAAGCCAAACTATGGCAG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................GTACCAGAAACTCTTTCAGAAGAGGTTCTTGGAAAGATGGGTGGACCAGCAAAAGGCGATGCACCAATTATCACACCCAATGACCTTGCTGAAGCTGATGGCTTTGTGTTTGGATTCCCAACAAGATTTGGGATGATGGCTGCTCAGTTCAAGGCATTTCTTGATGCCACTGGTGGTCTCTGGAGAACTCAGCAGCTTGCAGGCAAGCCAGCGGGCCTTTTCTACAGTACTGGCTCTCAAGGAGGTGGCCAAGAGACTACTGC....................................................................................................GTTGACTGCAATTACTCAGCTTGTTCACCATGGAATGATCTTTGTCCCGATTGGTTACACATTTGGTGCTGGCATGTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0323A14-r86Tr/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E319198" ref_strand="+" ref_description="SGN-E319198 [cTOB-16-D24]">
      <seq>tcttttctattctattccaacaacaactcattcatccacctactactttccctttcaaatggcaaccaaagtctacattgtttactactccatgtatggacatgttgagaagctagcacaagagataaagaaaggagccgcatcagttgaaggcgtagaagccaaactatggcaggtaccagaaactctttcagaagaggttcttggaaagatgggtggaccagcaaaaggcgatgcaccaattatcacacccaatgaccttgctgaagctgatggctttgtgtttggattcccaacaagatttgggatgatggctgctcagttcaaggcatttcttgatgccactggtggtctctggagaactcagcagcttgcaggcaagccagcgggccttttctacagtactggctctcaaggaggtggccaagagactactgcgttgactgcaattactcagcttgttcaccatggaatgatctttgtcccgattggttacacatttggtgctggcatgtt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0323A14-r86Tr/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0323A14.3" temp_strand="+" temp_description="C02HBa0323A14.3  AC215439.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0323A14 sequenced_by:kribb upload_account_name:korea">
        <position start="122315" stop="125091"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="122615" g_stop="122695" g_length="81"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="81" r_length="81" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="122696" i_stop="123812" i_length="1117">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.894" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="123813" g_stop="123906" g_length="94"/>
          <reference_exon_boundary r_type="cDNA" r_start="82" r_stop="175" r_length="94" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="123907" i_stop="124352" i_length="446">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="124353" g_stop="124613" g_length="261"/>
          <reference_exon_boundary r_type="cDNA" r_start="176" r_stop="438" r_length="263" r_score="0.985"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="124614" i_stop="124713" i_length="100">
            <donor d_prob="0.956" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="124714" g_stop="124791" g_length="78"/>
          <reference_exon_boundary r_type="cDNA" r_start="439" r_stop="516" r_length="78" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0323A14.3" gen_strand="+" ref_id="SGN-E319198" ref_strand="+">
        <total_alignment_score>0.992</total_alignment_score>
        <cumulative_length_of_scored_exons>514</cumulative_length_of_scored_exons>
        <coverage percentage="0.996" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0323A14.3" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E319198" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="122615" e_stop="122695"/>
          <exon e_start="123813" e_stop="123906"/>
          <exon e_start="124353" e_stop="124613"/>
          <exon e_start="124714" e_stop="124791"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCTTTTCTATTCTATTCCAACAACAACTCATTCATCCACCTACTACTTTCCCTTTCAAATGGCAACCAAAGTCTACATTGTGTAAGTACTCTATCTTTTTCTACATTTATATCTTTCTTGTTTTTTTTTTTTTATATATGTTTTGAGTTTGGGGTTCTCTGTTTTGATGTTTAGAGTGAAATGATTGTGGGTATGATTTATTTTTTGTTAATTTGATTCTGGGCTGATAGATTCTTGGTTCTTGATTTTTGCCATGTCTGTGTAAAGACTCTGTCTTTATGTACTGTTCTTATTATATAAATGGGAATATGGTCCTAAGTCTCTGCAAGATTCGTTTTCCAATGATTAATTGAAGAGATTGTGTGGGAAGGTACCAGTTGTTTCCAGTTTTTGTTGGGTTGATCTAAAGGTAGTTTATTGGAAGATTGTTATGAAAATGATATAGCCAATTAATTGTTACAGGCGTTGTTGGTTAGGTATTCTTTTTTGTCTTTTTATGAAAAAATGACATTCTTGAAATTAAAAAAATAATATGCTTCTACAAGTGTTTGTTGTCTTGATCTAAGATAGGAAAATATTTGCTTACTAAAAGGTTTTTATGAAAAATGATTTACCAACTAATTCACTGGGAATTGGTCAGTTGCTCTATTGCTAGTCTTTATGAGATGACATTCTTGAAATTGAATAATATTAACTTGAAGTTCCAAGATGGAGTTGTCGATATTACCATTGGTGCTAAATGATTTTGTTGATTAGAATCAACTATCATATAAATTTATGGCCTGAACTCCATAGTCTTTTCAAGATTCCTATTGGTAAAAGAAAATCTAAAAATTTCCAGAACATGTCTCATTGGATGATTTGTGTTTTATTGAGAACTAAGTTCTGGCTTGTGCCATCTTTTGTTCCTGTTTTATCTCTAGAAGACTTCTGTGAAGCTGGATTCTAGTGCCTGATGTCCTCATCCGGAATGTATTTGGTTTTATTTTACTGGATATCTTGCGACTGTTCCAATCTGATCTGTGATTCTTATCCAATTTATAGTCAACTTTTGTGTGTTTCATTTGTGTATCTGATGCTGTGAAGTCTTATAAACCCCCCAAAAATTGTCTCCAAAAGTAGAATGGTTTGTATGATCTATTTGATCTTTATGCTTGGGGCTTGTAAAGCTAATGGTGAAAAGTATAAATGAATGCAGTTACTACTCCATGTATGGACATGTTGAGAAGCTAGCACAAGAGATAAAGAAAGGAGCCGCATCAGTTGAAGGCGTAGAAGCCAAACTATGGCAGGTCTGTTTACATTTCATTTTGAGTTGTTATTAATGTGAATGTGTTAGAGAATTTGGTATCCCTGAGAATTGAAGAAATTATGTGAGTTTGACTTTGCCAACGGAATGTCTCCTAAAGTGATATACATTAATTATTGGAAGTGTGGAATCTCTAGAGTCCTAGTCCTTTCCTTAAAATCCTGCTGAGAAATTATTGCCATGACATTTGATGTAGTTATTCCATGTTTGACTACTAATTGTTTAGTGGAGTCAATGCATTTAGACAAAGAAAACCATTTAGTTGACTTGTCTTTTCTCAAATTACTTGTGACTCACTTTTCCTTAATTTCTATGATTGATTTCATATACTGAACAGTGTACCTTTATAGGGCTTTGGAGATGAAAGGAGAAAAAACTAATGAACGTGTATCGTTACTGTGTTCTGTTGTTGATTTGTGAATGGCACAGGTACCAGAAACTCTTTCAGAAGAGGTTCTTGGAAAGATGGGTGGACCAGCAAAA-GCGATGC-CCAATTATCACACCCAATGACCTTGCTGAAGCTGATGGCTTTGTGTTTGGATTCCCAACAAGATTTGGGATGATGGCTGCTCAGTTCAAGGCATTTCTTGATGCCACTGGTGGTCTCTGGAGAACTCAGCAGCTTGCAGGCAAGCCAGCGGGCCTTTTCTACAGTACTGGCTCTCAAGGAGGTGGCCAAGAGACTACTGCGTTAGTCCCTTCTCCTCAAAAAACTAACACATTTTGAGCTTGACTTGTGATTTGAAGATTCTAACTGAAAATTTTACATTAAAACTCAATAAATCTGCAGGTTGACTGCAATTACTCAGCTTGTTCACCATGGAATGATCTTTGTCCCGATTGGTTACACATTTGGTGCTGGCATGTT</genome_strand>
        <mrna_strand>TCTTTTCTATTCTATTCCAACAACAACTCATTCATCCACCTACTACTTTCCCTTTCAAATGGCAACCAAAGTCTACATTGT.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTACTACTCCATGTATGGACATGTTGAGAAGCTAGCACAAGAGATAAAGAAAGGAGCCGCATCAGTTGAAGGCGTAGAAGCCAAACTATGGCAG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................GTACCAGAAACTCTTTCAGAAGAGGTTCTTGGAAAGATGGGTGGACCAGCAAAAGGCGATGCACCAATTATCACACCCAATGACCTTGCTGAAGCTGATGGCTTTGTGTTTGGATTCCCAACAAGATTTGGGATGATGGCTGCTCAGTTCAAGGCATTTCTTGATGCCACTGGTGGTCTCTGGAGAACTCAGCAGCTTGCAGGCAAGCCAGCGGGCCTTTTCTACAGTACTGGCTCTCAAGGAGGTGGCCAAGAGACTACTGC....................................................................................................GTTGACTGCAATTACTCAGCTTGTTCACCATGGAATGATCTTTGTCCCGATTGGTTACACATTTGGTGCTGGCATGTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0323A14-r86Tr/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E338481" ref_strand="+" ref_description="SGN-E338481 [cTOE-15-N17]">
      <seq>tattctattccaacaacaactcattcatccacctactactttccctttcaaatggcaaccaaagtctacattgtttactactccatgtatggacatgttgagaagctagcacaagagataaagaaaggagccgcatcagttgaaggcgtagaagccaaactatggcaggtaccagaaactctttcagaagaggttcttggaaagatgggtggaccagcaaaaggcgatgcaccaattatcacacccaatgaccttgctgaagctgatggctttgtgtttggattcccaacaagatttgggatgatggctgctcagttcaaggcatttcttgatgccactggtggtctctggagaactcagcagcttgcaggcaagccagcgggccttttctacagtactggctc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0323A14-r86Tr/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0323A14.3" temp_strand="+" temp_description="C02HBa0323A14.3  AC215439.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0323A14 sequenced_by:kribb upload_account_name:korea">
        <position start="122322" stop="124886"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="122622" g_stop="122695" g_length="74"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="74" r_length="74" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="122696" i_stop="123812" i_length="1117">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.894" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="123813" g_stop="123906" g_length="94"/>
          <reference_exon_boundary r_type="cDNA" r_start="75" r_stop="168" r_length="94" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="123907" i_stop="124352" i_length="446">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="124353" g_stop="124586" g_length="234"/>
          <reference_exon_boundary r_type="cDNA" r_start="169" r_stop="404" r_length="236" r_score="0.983"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0323A14.3" gen_strand="+" ref_id="SGN-E338481" ref_strand="+">
        <total_alignment_score>0.990</total_alignment_score>
        <cumulative_length_of_scored_exons>402</cumulative_length_of_scored_exons>
        <coverage percentage="0.995" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0323A14.3" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E338481" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="122622" e_stop="122695"/>
          <exon e_start="123813" e_stop="123906"/>
          <exon e_start="124353" e_stop="124586"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TATTCTATTCCAACAACAACTCATTCATCCACCTACTACTTTCCCTTTCAAATGGCAACCAAAGTCTACATTGTGTAAGTACTCTATCTTTTTCTACATTTATATCTTTCTTGTTTTTTTTTTTTTATATATGTTTTGAGTTTGGGGTTCTCTGTTTTGATGTTTAGAGTGAAATGATTGTGGGTATGATTTATTTTTTGTTAATTTGATTCTGGGCTGATAGATTCTTGGTTCTTGATTTTTGCCATGTCTGTGTAAAGACTCTGTCTTTATGTACTGTTCTTATTATATAAATGGGAATATGGTCCTAAGTCTCTGCAAGATTCGTTTTCCAATGATTAATTGAAGAGATTGTGTGGGAAGGTACCAGTTGTTTCCAGTTTTTGTTGGGTTGATCTAAAGGTAGTTTATTGGAAGATTGTTATGAAAATGATATAGCCAATTAATTGTTACAGGCGTTGTTGGTTAGGTATTCTTTTTTGTCTTTTTATGAAAAAATGACATTCTTGAAATTAAAAAAATAATATGCTTCTACAAGTGTTTGTTGTCTTGATCTAAGATAGGAAAATATTTGCTTACTAAAAGGTTTTTATGAAAAATGATTTACCAACTAATTCACTGGGAATTGGTCAGTTGCTCTATTGCTAGTCTTTATGAGATGACATTCTTGAAATTGAATAATATTAACTTGAAGTTCCAAGATGGAGTTGTCGATATTACCATTGGTGCTAAATGATTTTGTTGATTAGAATCAACTATCATATAAATTTATGGCCTGAACTCCATAGTCTTTTCAAGATTCCTATTGGTAAAAGAAAATCTAAAAATTTCCAGAACATGTCTCATTGGATGATTTGTGTTTTATTGAGAACTAAGTTCTGGCTTGTGCCATCTTTTGTTCCTGTTTTATCTCTAGAAGACTTCTGTGAAGCTGGATTCTAGTGCCTGATGTCCTCATCCGGAATGTATTTGGTTTTATTTTACTGGATATCTTGCGACTGTTCCAATCTGATCTGTGATTCTTATCCAATTTATAGTCAACTTTTGTGTGTTTCATTTGTGTATCTGATGCTGTGAAGTCTTATAAACCCCCCAAAAATTGTCTCCAAAAGTAGAATGGTTTGTATGATCTATTTGATCTTTATGCTTGGGGCTTGTAAAGCTAATGGTGAAAAGTATAAATGAATGCAGTTACTACTCCATGTATGGACATGTTGAGAAGCTAGCACAAGAGATAAAGAAAGGAGCCGCATCAGTTGAAGGCGTAGAAGCCAAACTATGGCAGGTCTGTTTACATTTCATTTTGAGTTGTTATTAATGTGAATGTGTTAGAGAATTTGGTATCCCTGAGAATTGAAGAAATTATGTGAGTTTGACTTTGCCAACGGAATGTCTCCTAAAGTGATATACATTAATTATTGGAAGTGTGGAATCTCTAGAGTCCTAGTCCTTTCCTTAAAATCCTGCTGAGAAATTATTGCCATGACATTTGATGTAGTTATTCCATGTTTGACTACTAATTGTTTAGTGGAGTCAATGCATTTAGACAAAGAAAACCATTTAGTTGACTTGTCTTTTCTCAAATTACTTGTGACTCACTTTTCCTTAATTTCTATGATTGATTTCATATACTGAACAGTGTACCTTTATAGGGCTTTGGAGATGAAAGGAGAAAAAACTAATGAACGTGTATCGTTACTGTGTTCTGTTGTTGATTTGTGAATGGCACAGGTACCAGAAACTCTTTCAGAAGAGGTTCTTGGAAAGATGGGTGGACCAGCAAAA-GCGATGC-CCAATTATCACACCCAATGACCTTGCTGAAGCTGATGGCTTTGTGTTTGGATTCCCAACAAGATTTGGGATGATGGCTGCTCAGTTCAAGGCATTTCTTGATGCCACTGGTGGTCTCTGGAGAACTCAGCAGCTTGCAGGCAAGCCAGCGGGCCTTTTCTACAGTACTGGCTC</genome_strand>
        <mrna_strand>TATTCTATTCCAACAACAACTCATTCATCCACCTACTACTTTCCCTTTCAAATGGCAACCAAAGTCTACATTGT.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTACTACTCCATGTATGGACATGTTGAGAAGCTAGCACAAGAGATAAAGAAAGGAGCCGCATCAGTTGAAGGCGTAGAAGCCAAACTATGGCAG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................GTACCAGAAACTCTTTCAGAAGAGGTTCTTGGAAAGATGGGTGGACCAGCAAAAGGCGATGCACCAATTATCACACCCAATGACCTTGCTGAAGCTGATGGCTTTGTGTTTGGATTCCCAACAAGATTTGGGATGATGGCTGCTCAGTTCAAGGCATTTCTTGATGCCACTGGTGGTCTCTGGAGAACTCAGCAGCTTGCAGGCAAGCCAGCGGGCCTTTTCTACAGTACTGGCTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0323A14-r86Tr/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E287632" ref_strand="+" ref_description="SGN-E287632 [cLES-9-K5]">
      <seq>aacaactcattcatccacctactactttccctttcaaatggcaaccaaagtctacattgtttactactccatgtatggacatgttgagaagctagcacaagagataaagaaaggagccgcatcagttgaaggcgtagaagccaaactatggcaggtaccagaaactctttcagaagaggttcttggaaagatgggtggaccagcaaaaggcgatgcaccaattatcacacccaatgaccttgctgaagctgatggctttgtgtttggattcccaacaagatttgggatgatggctgctcagttcaaggcatttcttgatgccactg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0323A14-r86Tr/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0323A14.3" temp_strand="+" temp_description="C02HBa0323A14.3  AC215439.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0323A14 sequenced_by:kribb upload_account_name:korea">
        <position start="122336" stop="124822"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="122636" g_stop="122695" g_length="60"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="60" r_length="60" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="122696" i_stop="123812" i_length="1117">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.894" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="123813" g_stop="123906" g_length="94"/>
          <reference_exon_boundary r_type="cDNA" r_start="61" r_stop="154" r_length="94" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="123907" i_stop="124352" i_length="446">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="124353" g_stop="124522" g_length="170"/>
          <reference_exon_boundary r_type="cDNA" r_start="155" r_stop="326" r_length="172" r_score="0.976"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0323A14.3" gen_strand="+" ref_id="SGN-E287632" ref_strand="+">
        <total_alignment_score>0.988</total_alignment_score>
        <cumulative_length_of_scored_exons>324</cumulative_length_of_scored_exons>
        <coverage percentage="0.994" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0323A14.3" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E287632" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="122636" e_stop="122695"/>
          <exon e_start="123813" e_stop="123906"/>
          <exon e_start="124353" e_stop="124522"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AACAACTCATTCATCCACCTACTACTTTCCCTTTCAAATGGCAACCAAAGTCTACATTGTGTAAGTACTCTATCTTTTTCTACATTTATATCTTTCTTGTTTTTTTTTTTTTATATATGTTTTGAGTTTGGGGTTCTCTGTTTTGATGTTTAGAGTGAAATGATTGTGGGTATGATTTATTTTTTGTTAATTTGATTCTGGGCTGATAGATTCTTGGTTCTTGATTTTTGCCATGTCTGTGTAAAGACTCTGTCTTTATGTACTGTTCTTATTATATAAATGGGAATATGGTCCTAAGTCTCTGCAAGATTCGTTTTCCAATGATTAATTGAAGAGATTGTGTGGGAAGGTACCAGTTGTTTCCAGTTTTTGTTGGGTTGATCTAAAGGTAGTTTATTGGAAGATTGTTATGAAAATGATATAGCCAATTAATTGTTACAGGCGTTGTTGGTTAGGTATTCTTTTTTGTCTTTTTATGAAAAAATGACATTCTTGAAATTAAAAAAATAATATGCTTCTACAAGTGTTTGTTGTCTTGATCTAAGATAGGAAAATATTTGCTTACTAAAAGGTTTTTATGAAAAATGATTTACCAACTAATTCACTGGGAATTGGTCAGTTGCTCTATTGCTAGTCTTTATGAGATGACATTCTTGAAATTGAATAATATTAACTTGAAGTTCCAAGATGGAGTTGTCGATATTACCATTGGTGCTAAATGATTTTGTTGATTAGAATCAACTATCATATAAATTTATGGCCTGAACTCCATAGTCTTTTCAAGATTCCTATTGGTAAAAGAAAATCTAAAAATTTCCAGAACATGTCTCATTGGATGATTTGTGTTTTATTGAGAACTAAGTTCTGGCTTGTGCCATCTTTTGTTCCTGTTTTATCTCTAGAAGACTTCTGTGAAGCTGGATTCTAGTGCCTGATGTCCTCATCCGGAATGTATTTGGTTTTATTTTACTGGATATCTTGCGACTGTTCCAATCTGATCTGTGATTCTTATCCAATTTATAGTCAACTTTTGTGTGTTTCATTTGTGTATCTGATGCTGTGAAGTCTTATAAACCCCCCAAAAATTGTCTCCAAAAGTAGAATGGTTTGTATGATCTATTTGATCTTTATGCTTGGGGCTTGTAAAGCTAATGGTGAAAAGTATAAATGAATGCAGTTACTACTCCATGTATGGACATGTTGAGAAGCTAGCACAAGAGATAAAGAAAGGAGCCGCATCAGTTGAAGGCGTAGAAGCCAAACTATGGCAGGTCTGTTTACATTTCATTTTGAGTTGTTATTAATGTGAATGTGTTAGAGAATTTGGTATCCCTGAGAATTGAAGAAATTATGTGAGTTTGACTTTGCCAACGGAATGTCTCCTAAAGTGATATACATTAATTATTGGAAGTGTGGAATCTCTAGAGTCCTAGTCCTTTCCTTAAAATCCTGCTGAGAAATTATTGCCATGACATTTGATGTAGTTATTCCATGTTTGACTACTAATTGTTTAGTGGAGTCAATGCATTTAGACAAAGAAAACCATTTAGTTGACTTGTCTTTTCTCAAATTACTTGTGACTCACTTTTCCTTAATTTCTATGATTGATTTCATATACTGAACAGTGTACCTTTATAGGGCTTTGGAGATGAAAGGAGAAAAAACTAATGAACGTGTATCGTTACTGTGTTCTGTTGTTGATTTGTGAATGGCACAGGTACCAGAAACTCTTTCAGAAGAGGTTCTTGGAAAGATGGGTGGACCAGCAAAA-GCGATGC-CCAATTATCACACCCAATGACCTTGCTGAAGCTGATGGCTTTGTGTTTGGATTCCCAACAAGATTTGGGATGATGGCTGCTCAGTTCAAGGCATTTCTTGATGCCACTG</genome_strand>
        <mrna_strand>AACAACTCATTCATCCACCTACTACTTTCCCTTTCAAATGGCAACCAAAGTCTACATTGT.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTACTACTCCATGTATGGACATGTTGAGAAGCTAGCACAAGAGATAAAGAAAGGAGCCGCATCAGTTGAAGGCGTAGAAGCCAAACTATGGCAG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................GTACCAGAAACTCTTTCAGAAGAGGTTCTTGGAAAGATGGGTGGACCAGCAAAAGGCGATGCACCAATTATCACACCCAATGACCTTGCTGAAGCTGATGGCTTTGTGTTTGGATTCCCAACAAGATTTGGGATGATGGCTGCTCAGTTCAAGGCATTTCTTGATGCCACTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0323A14-r86Tr/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E308740" ref_strand="+" ref_description="SGN-E308740 [cLEZ-11-O2]">
      <seq>aactcattcatccacctactactttcactttcaaatggcaaccaaagtctacattggttactactccatgtatggacatgttgagaagctagcacaagagataaagaaaggagccgcatcagttgaaggcgtagaacccaaactatggcaggtaccagaaactctttcagaagaagttcttggaaagatgggtggaccaccaaaaggcgatgcaccaattatcacacccaatgaccttgctgaagctgatggcttcgtgtttggattcccaacaagatttgggatgatggctgctcagttcaaggcatgtcttgatgccactggtggtctctggagaactcatcaacttgcacgcaagccaacgggccttttctacaggactggctctcaaggaggtgggcaagagactactgcgttgactg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0323A14-r86Tr/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0323A14.3" temp_strand="+" temp_description="C02HBa0323A14.3  AC215439.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0323A14 sequenced_by:kribb upload_account_name:korea">
        <position start="122339" stop="124919"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="122639" g_stop="122695" g_length="57"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="57" r_length="57" r_score="0.965"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="122696" i_stop="123812" i_length="1117">
            <donor d_prob="0.998" d_score="0.96"/>
            <acceptor a_prob="0.894" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="123813" g_stop="123906" g_length="94"/>
          <reference_exon_boundary r_type="cDNA" r_start="58" r_stop="151" r_length="94" r_score="0.989"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="123907" i_stop="124352" i_length="446">
            <donor d_prob="0.998" d_score="0.98"/>
            <acceptor a_prob="0.999" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="124353" g_stop="124613" g_length="261"/>
          <reference_exon_boundary r_type="cDNA" r_start="152" r_stop="414" r_length="263" r_score="0.946"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="124614" i_stop="124713" i_length="100">
            <donor d_prob="0.956" d_score="0.96"/>
            <acceptor a_prob="0.995" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="124714" g_stop="124721" g_length="8"/>
          <reference_exon_boundary r_type="cDNA" r_start="415" r_stop="422" r_length="8" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0323A14.3" gen_strand="+" ref_id="SGN-E308740" ref_strand="+">
        <total_alignment_score>0.959</total_alignment_score>
        <cumulative_length_of_scored_exons>420</cumulative_length_of_scored_exons>
        <coverage percentage="0.995" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0323A14.3" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E308740" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="122639" e_stop="122695"/>
          <exon e_start="123813" e_stop="123906"/>
          <exon e_start="124353" e_stop="124613"/>
          <exon e_start="124714" e_stop="124721"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AACTCATTCATCCACCTACTACTTTCCCTTTCAAATGGCAACCAAAGTCTACATTGTGTAAGTACTCTATCTTTTTCTACATTTATATCTTTCTTGTTTTTTTTTTTTTATATATGTTTTGAGTTTGGGGTTCTCTGTTTTGATGTTTAGAGTGAAATGATTGTGGGTATGATTTATTTTTTGTTAATTTGATTCTGGGCTGATAGATTCTTGGTTCTTGATTTTTGCCATGTCTGTGTAAAGACTCTGTCTTTATGTACTGTTCTTATTATATAAATGGGAATATGGTCCTAAGTCTCTGCAAGATTCGTTTTCCAATGATTAATTGAAGAGATTGTGTGGGAAGGTACCAGTTGTTTCCAGTTTTTGTTGGGTTGATCTAAAGGTAGTTTATTGGAAGATTGTTATGAAAATGATATAGCCAATTAATTGTTACAGGCGTTGTTGGTTAGGTATTCTTTTTTGTCTTTTTATGAAAAAATGACATTCTTGAAATTAAAAAAATAATATGCTTCTACAAGTGTTTGTTGTCTTGATCTAAGATAGGAAAATATTTGCTTACTAAAAGGTTTTTATGAAAAATGATTTACCAACTAATTCACTGGGAATTGGTCAGTTGCTCTATTGCTAGTCTTTATGAGATGACATTCTTGAAATTGAATAATATTAACTTGAAGTTCCAAGATGGAGTTGTCGATATTACCATTGGTGCTAAATGATTTTGTTGATTAGAATCAACTATCATATAAATTTATGGCCTGAACTCCATAGTCTTTTCAAGATTCCTATTGGTAAAAGAAAATCTAAAAATTTCCAGAACATGTCTCATTGGATGATTTGTGTTTTATTGAGAACTAAGTTCTGGCTTGTGCCATCTTTTGTTCCTGTTTTATCTCTAGAAGACTTCTGTGAAGCTGGATTCTAGTGCCTGATGTCCTCATCCGGAATGTATTTGGTTTTATTTTACTGGATATCTTGCGACTGTTCCAATCTGATCTGTGATTCTTATCCAATTTATAGTCAACTTTTGTGTGTTTCATTTGTGTATCTGATGCTGTGAAGTCTTATAAACCCCCCAAAAATTGTCTCCAAAAGTAGAATGGTTTGTATGATCTATTTGATCTTTATGCTTGGGGCTTGTAAAGCTAATGGTGAAAAGTATAAATGAATGCAGTTACTACTCCATGTATGGACATGTTGAGAAGCTAGCACAAGAGATAAAGAAAGGAGCCGCATCAGTTGAAGGCGTAGAAGCCAAACTATGGCAGGTCTGTTTACATTTCATTTTGAGTTGTTATTAATGTGAATGTGTTAGAGAATTTGGTATCCCTGAGAATTGAAGAAATTATGTGAGTTTGACTTTGCCAACGGAATGTCTCCTAAAGTGATATACATTAATTATTGGAAGTGTGGAATCTCTAGAGTCCTAGTCCTTTCCTTAAAATCCTGCTGAGAAATTATTGCCATGACATTTGATGTAGTTATTCCATGTTTGACTACTAATTGTTTAGTGGAGTCAATGCATTTAGACAAAGAAAACCATTTAGTTGACTTGTCTTTTCTCAAATTACTTGTGACTCACTTTTCCTTAATTTCTATGATTGATTTCATATACTGAACAGTGTACCTTTATAGGGCTTTGGAGATGAAAGGAGAAAAAACTAATGAACGTGTATCGTTACTGTGTTCTGTTGTTGATTTGTGAATGGCACAGGTACCAGAAACTCTTTCAGAAGAGGTTCTTGGAAAGATGGGTGGACCAGCAAAA-GCGATGC-CCAATTATCACACCCAATGACCTTGCTGAAGCTGATGGCTTTGTGTTTGGATTCCCAACAAGATTTGGGATGATGGCTGCTCAGTTCAAGGCATTTCTTGATGCCACTGGTGGTCTCTGGAGAACTCAGCAGCTTGCAGGCAAGCCAGCGGGCCTTTTCTACAGTACTGGCTCTCAAGGAGGTGGCCAAGAGACTACTGCGTTAGTCCCTTCTCCTCAAAAAACTAACACATTTTGAGCTTGACTTGTGATTTGAAGATTCTAACTGAAAATTTTACATTAAAACTCAATAAATCTGCAGGTTGACTG</genome_strand>
        <mrna_strand>AACTCATTCATCCACCTACTACTTTCACTTTCAAATGGCAACCAAAGTCTACATTGG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTACTACTCCATGTATGGACATGTTGAGAAGCTAGCACAAGAGATAAAGAAAGGAGCCGCATCAGTTGAAGGCGTAGAACCCAAACTATGGCAG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................GTACCAGAAACTCTTTCAGAAGAAGTTCTTGGAAAGATGGGTGGACCACCAAAAGGCGATGCACCAATTATCACACCCAATGACCTTGCTGAAGCTGATGGCTTCGTGTTTGGATTCCCAACAAGATTTGGGATGATGGCTGCTCAGTTCAAGGCATGTCTTGATGCCACTGGTGGTCTCTGGAGAACTCATCAACTTGCACGCAAGCCAACGGGCCTTTTCTACAGGACTGGCTCTCAAGGAGGTGGGCAAGAGACTACTGC....................................................................................................GTTGACTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0323A14-r86Tr/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E712250" ref_strand="+" ref_description="SGN-E712250 [FB04BC12]">
      <seq>caaccaaagtctacattgtttactactccatgtatggacatgttgagaagctagcacgagagataaagaaaggagccgcatcagttgaaggcgtataagccaaactgtggcaggtaccaaaaactctttcacaagaggttcttggaaagatgggtggaccatcaaaaggcgatgcaccaattatcacacccaatgaccttgctgaagctgatggctttgtgtttggattcccaacaagatttgggatgatggctgctcagttcaaggcatttcttgatgccactggtggtctctggagaactcagcagcttgcaggcaagccagcgggccttttctacagtactggctctcaaggaggtggccaagagactactgcgttgactgcaattactcagcttgttcaccatggaatgatctttgtcccgattggttacacatttggtgctggcatgttcgagatggagaatattaaaggtggaagtccttacggtgcatgaacttttgctggagatggctctagacagccaacagatcttgaactggagcaagctttccaccagggaaaacacatcgctaccatcgcaaagaagctcaaaggctctgcttgattgtttcactacaaactcatgtcctattgcattctgctgtccatttttttttcccctatgtctagtatactcttgttttaagttgcatttctactacaacagagcgctaagtgattattatctattatatcagcatatatatatagggtcagtgtctatcacagtttacagaggttgtttacatgttctatgaatcatacttaattttttttttaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0323A14-r86Tr/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0323A14.3" temp_strand="+" temp_description="C02HBa0323A14.3  AC215439.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0323A14 sequenced_by:kribb upload_account_name:korea">
        <position start="122377" stop="125459"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="122677" g_stop="122695" g_length="19"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="19" r_length="19" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="122696" i_stop="123812" i_length="1117">
            <donor d_prob="0.998" d_score="0.00"/>
            <acceptor a_prob="0.894" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="123813" g_stop="123906" g_length="94"/>
          <reference_exon_boundary r_type="cDNA" r_start="20" r_stop="113" r_length="94" r_score="0.968"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="123907" i_stop="124352" i_length="446">
            <donor d_prob="0.998" d_score="0.96"/>
            <acceptor a_prob="0.999" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="124353" g_stop="124613" g_length="261"/>
          <reference_exon_boundary r_type="cDNA" r_start="114" r_stop="376" r_length="263" r_score="0.973"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="124614" i_stop="124713" i_length="100">
            <donor d_prob="0.956" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="124714" g_stop="125159" g_length="446"/>
          <reference_exon_boundary r_type="cDNA" r_start="377" r_stop="822" r_length="446" r_score="0.982"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="823" polyA_stop="837"/>
      <MATCH_line gen_id="C02HBa0323A14.3" gen_strand="+" ref_id="SGN-E712250" ref_strand="+">
        <total_alignment_score>0.978</total_alignment_score>
        <cumulative_length_of_scored_exons>820</cumulative_length_of_scored_exons>
        <coverage percentage="0.980" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0323A14.3" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E712250" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="122677" e_stop="122695"/>
          <exon e_start="123813" e_stop="123906"/>
          <exon e_start="124353" e_stop="124613"/>
          <exon e_start="124714" e_stop="125159"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAACCAAAGTCTACATTGTGTAAGTACTCTATCTTTTTCTACATTTATATCTTTCTTGTTTTTTTTTTTTTATATATGTTTTGAGTTTGGGGTTCTCTGTTTTGATGTTTAGAGTGAAATGATTGTGGGTATGATTTATTTTTTGTTAATTTGATTCTGGGCTGATAGATTCTTGGTTCTTGATTTTTGCCATGTCTGTGTAAAGACTCTGTCTTTATGTACTGTTCTTATTATATAAATGGGAATATGGTCCTAAGTCTCTGCAAGATTCGTTTTCCAATGATTAATTGAAGAGATTGTGTGGGAAGGTACCAGTTGTTTCCAGTTTTTGTTGGGTTGATCTAAAGGTAGTTTATTGGAAGATTGTTATGAAAATGATATAGCCAATTAATTGTTACAGGCGTTGTTGGTTAGGTATTCTTTTTTGTCTTTTTATGAAAAAATGACATTCTTGAAATTAAAAAAATAATATGCTTCTACAAGTGTTTGTTGTCTTGATCTAAGATAGGAAAATATTTGCTTACTAAAAGGTTTTTATGAAAAATGATTTACCAACTAATTCACTGGGAATTGGTCAGTTGCTCTATTGCTAGTCTTTATGAGATGACATTCTTGAAATTGAATAATATTAACTTGAAGTTCCAAGATGGAGTTGTCGATATTACCATTGGTGCTAAATGATTTTGTTGATTAGAATCAACTATCATATAAATTTATGGCCTGAACTCCATAGTCTTTTCAAGATTCCTATTGGTAAAAGAAAATCTAAAAATTTCCAGAACATGTCTCATTGGATGATTTGTGTTTTATTGAGAACTAAGTTCTGGCTTGTGCCATCTTTTGTTCCTGTTTTATCTCTAGAAGACTTCTGTGAAGCTGGATTCTAGTGCCTGATGTCCTCATCCGGAATGTATTTGGTTTTATTTTACTGGATATCTTGCGACTGTTCCAATCTGATCTGTGATTCTTATCCAATTTATAGTCAACTTTTGTGTGTTTCATTTGTGTATCTGATGCTGTGAAGTCTTATAAACCCCCCAAAAATTGTCTCCAAAAGTAGAATGGTTTGTATGATCTATTTGATCTTTATGCTTGGGGCTTGTAAAGCTAATGGTGAAAAGTATAAATGAATGCAGTTACTACTCCATGTATGGACATGTTGAGAAGCTAGCACAAGAGATAAAGAAAGGAGCCGCATCAGTTGAAGGCGTAGAAGCCAAACTATGGCAGGTCTGTTTACATTTCATTTTGAGTTGTTATTAATGTGAATGTGTTAGAGAATTTGGTATCCCTGAGAATTGAAGAAATTATGTGAGTTTGACTTTGCCAACGGAATGTCTCCTAAAGTGATATACATTAATTATTGGAAGTGTGGAATCTCTAGAGTCCTAGTCCTTTCCTTAAAATCCTGCTGAGAAATTATTGCCATGACATTTGATGTAGTTATTCCATGTTTGACTACTAATTGTTTAGTGGAGTCAATGCATTTAGACAAAGAAAACCATTTAGTTGACTTGTCTTTTCTCAAATTACTTGTGACTCACTTTTCCTTAATTTCTATGATTGATTTCATATACTGAACAGTGTACCTTTATAGGGCTTTGGAGATGAAAGGAGAAAAAACTAATGAACGTGTATCGTTACTGTGTTCTGTTGTTGATTTGTGAATGGCACAGGTACCAGAAACTCTTTCAGAAGAGGTTCTTGGAAAGATGGGTGGACCAGCAAAA-GCGATGC-CCAATTATCACACCCAATGACCTTGCTGAAGCTGATGGCTTTGTGTTTGGATTCCCAACAAGATTTGGGATGATGGCTGCTCAGTTCAAGGCATTTCTTGATGCCACTGGTGGTCTCTGGAGAACTCAGCAGCTTGCAGGCAAGCCAGCGGGCCTTTTCTACAGTACTGGCTCTCAAGGAGGTGGCCAAGAGACTACTGCGTTAGTCCCTTCTCCTCAAAAAACTAACACATTTTGAGCTTGACTTGTGATTTGAAGATTCTAACTGAAAATTTTACATTAAAACTCAATAAATCTGCAGGTTGACTGCAATTACTCAGCTTGTTCACCATGGAATGATCTTTGTCCCGATTGGTTACACATTTGGTGCTGGCATGTTCGAGATGGAGAAGATTAAAGGTGGAAGTCCTTACGGTGCAGGAACTTTTGCTGGAGATGGCTCTAGACAGCCAACAGATCTTGAACTGGAGCAAGCTTTCCACCAGGGAAAACACATTGCTACCATCGCAAAGAAGCTCAAAGGCTCTGCTTGATTGTTTCACTACAAACTCATGTCCTATTGCATTCTGCTGTCCATTTTTTTTTCCCCTATGTCTAGTATACTCTTGTTTTAAGTTGCATTTCTACTACAAAAAAACAATAAGTGATTATTATCTATTATATCAGCATATATATATAGGGTCAGTGTCTATCACAGTTTACAGAGGTTGTTTACATGTTCTATGAATCATACTTAATTTTTTTTTT</genome_strand>
        <mrna_strand>CAACCAAAGTCTACATTGT.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTACTACTCCATGTATGGACATGTTGAGAAGCTAGCACGAGAGATAAAGAAAGGAGCCGCATCAGTTGAAGGCGTATAAGCCAAACTGTGGCAG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................GTACCAAAAACTCTTTCACAAGAGGTTCTTGGAAAGATGGGTGGACCATCAAAAGGCGATGCACCAATTATCACACCCAATGACCTTGCTGAAGCTGATGGCTTTGTGTTTGGATTCCCAACAAGATTTGGGATGATGGCTGCTCAGTTCAAGGCATTTCTTGATGCCACTGGTGGTCTCTGGAGAACTCAGCAGCTTGCAGGCAAGCCAGCGGGCCTTTTCTACAGTACTGGCTCTCAAGGAGGTGGCCAAGAGACTACTGC....................................................................................................GTTGACTGCAATTACTCAGCTTGTTCACCATGGAATGATCTTTGTCCCGATTGGTTACACATTTGGTGCTGGCATGTTCGAGATGGAGAATATTAAAGGTGGAAGTCCTTACGGTGCATGAACTTTTGCTGGAGATGGCTCTAGACAGCCAACAGATCTTGAACTGGAGCAAGCTTTCCACCAGGGAAAACACATCGCTACCATCGCAAAGAAGCTCAAAGGCTCTGCTTGATTGTTTCACTACAAACTCATGTCCTATTGCATTCTGCTGTCCATTTTTTTTTCCCCTATGTCTAGTATACTCTTGTTTTAAGTTGCATTTCTACTACAACAGAGCGCTAAGTGATTATTATCTATTATATCAGCATATATATATAGGGTCAGTGTCTATCACAGTTTACAGAGGTTGTTTACATGTTCTATGAATCATACTTAATTTTTTTTTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0323A14-r86Tr/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E541822" ref_strand="+" ref_description="SGN-E541822 [TUS-62-M24]">
      <seq>gtctttatgagatgacattcttgaaattgaataatattaacttgaagttccaagatggagttgtcgatattaccattggtgctaaatgattttgttgattagaatcaactatcatataaatttatggcctgaactccatagtcttttcaagattcctattgttactactccatgtatggacatgttgagaagctagcacaagagataaagaaaggagccgcatcagttgaaggcgtagaagccaaactatggcaggtaccagaaactctttcagaagaggttcttggaaagatgggtggaccagcaaaaggcgatgcaccaattatcacacccaatgaccttgctgaagctgatggctttgtgtttggattcccaacaagatttgggatgatggctgctcagttcaaggcatttcttgatgccactggtggtctctggagaactcagcagcttgcaggcaagccagcgggccttttctacagtactggctctcaaggaggtggccaagagactactgcgttgactgcaattactcagcttgttcaccatggaatgatctttgtcccgattggttacacatttggtgctggcatgttcgagatggagaagattaaaggtggaagtccttacggtgcaggaacttttgctggagatggctctagacagccaacagatctttgactggagcaagctttcaccagggaaaacacattgctaccat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0323A14-r86Tr/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0323A14.3" temp_strand="+" temp_description="C02HBa0323A14.3  AC215439.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0323A14 sequenced_by:kribb upload_account_name:korea">
        <position start="122969" stop="125217"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="123269" g_stop="123429" g_length="161"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="161" r_length="161" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="123430" i_stop="123812" i_length="383">
            <donor d_prob="0.872" d_score="1.00"/>
            <acceptor a_prob="0.894" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="123813" g_stop="123906" g_length="94"/>
          <reference_exon_boundary r_type="cDNA" r_start="162" r_stop="255" r_length="94" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="123907" i_stop="124352" i_length="446">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="124353" g_stop="124613" g_length="261"/>
          <reference_exon_boundary r_type="cDNA" r_start="256" r_stop="518" r_length="263" r_score="0.985"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="124614" i_stop="124713" i_length="100">
            <donor d_prob="0.956" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="124714" g_stop="124917" g_length="204"/>
          <reference_exon_boundary r_type="cDNA" r_start="519" r_stop="721" r_length="203" r_score="0.985"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0323A14.3" gen_strand="+" ref_id="SGN-E541822" ref_strand="+">
        <total_alignment_score>0.990</total_alignment_score>
        <cumulative_length_of_scored_exons>720</cumulative_length_of_scored_exons>
        <coverage percentage="0.999" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0323A14.3" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E541822" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="123269" e_stop="123429"/>
          <exon e_start="123813" e_stop="123906"/>
          <exon e_start="124353" e_stop="124613"/>
          <exon e_start="124714" e_stop="124917"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTCTTTATGAGATGACATTCTTGAAATTGAATAATATTAACTTGAAGTTCCAAGATGGAGTTGTCGATATTACCATTGGTGCTAAATGATTTTGTTGATTAGAATCAACTATCATATAAATTTATGGCCTGAACTCCATAGTCTTTTCAAGATTCCTATTGGTAAAAGAAAATCTAAAAATTTCCAGAACATGTCTCATTGGATGATTTGTGTTTTATTGAGAACTAAGTTCTGGCTTGTGCCATCTTTTGTTCCTGTTTTATCTCTAGAAGACTTCTGTGAAGCTGGATTCTAGTGCCTGATGTCCTCATCCGGAATGTATTTGGTTTTATTTTACTGGATATCTTGCGACTGTTCCAATCTGATCTGTGATTCTTATCCAATTTATAGTCAACTTTTGTGTGTTTCATTTGTGTATCTGATGCTGTGAAGTCTTATAAACCCCCCAAAAATTGTCTCCAAAAGTAGAATGGTTTGTATGATCTATTTGATCTTTATGCTTGGGGCTTGTAAAGCTAATGGTGAAAAGTATAAATGAATGCAGTTACTACTCCATGTATGGACATGTTGAGAAGCTAGCACAAGAGATAAAGAAAGGAGCCGCATCAGTTGAAGGCGTAGAAGCCAAACTATGGCAGGTCTGTTTACATTTCATTTTGAGTTGTTATTAATGTGAATGTGTTAGAGAATTTGGTATCCCTGAGAATTGAAGAAATTATGTGAGTTTGACTTTGCCAACGGAATGTCTCCTAAAGTGATATACATTAATTATTGGAAGTGTGGAATCTCTAGAGTCCTAGTCCTTTCCTTAAAATCCTGCTGAGAAATTATTGCCATGACATTTGATGTAGTTATTCCATGTTTGACTACTAATTGTTTAGTGGAGTCAATGCATTTAGACAAAGAAAACCATTTAGTTGACTTGTCTTTTCTCAAATTACTTGTGACTCACTTTTCCTTAATTTCTATGATTGATTTCATATACTGAACAGTGTACCTTTATAGGGCTTTGGAGATGAAAGGAGAAAAAACTAATGAACGTGTATCGTTACTGTGTTCTGTTGTTGATTTGTGAATGGCACAGGTACCAGAAACTCTTTCAGAAGAGGTTCTTGGAAAGATGGGTGGACCAGCAAAAG-CGATGC-CCAATTATCACACCCAATGACCTTGCTGAAGCTGATGGCTTTGTGTTTGGATTCCCAACAAGATTTGGGATGATGGCTGCTCAGTTCAAGGCATTTCTTGATGCCACTGGTGGTCTCTGGAGAACTCAGCAGCTTGCAGGCAAGCCAGCGGGCCTTTTCTACAGTACTGGCTCTCAAGGAGGTGGCCAAGAGACTACTGCGTTAGTCCCTTCTCCTCAAAAAACTAACACATTTTGAGCTTGACTTGTGATTTGAAGATTCTAACTGAAAATTTTACATTAAAACTCAATAAATCTGCAGGTTGACTGCAATTACTCAGCTTGTTCACCATGGAATGATCTTTGTCCCGATTGGTTACACATTTGGTGCTGGCATGTTCGAGATGGAGAAGATTAAAGGTGGAAGTCCTTACGGTGCAGGAACTTTTGCTGGAGATGGCTCTAGACAGCCAACAGATCTTGAACTGGAGCAAGCTTTCCACCAGGGAAAACACATTGCTACCAT</genome_strand>
        <mrna_strand>GTCTTTATGAGATGACATTCTTGAAATTGAATAATATTAACTTGAAGTTCCAAGATGGAGTTGTCGATATTACCATTGGTGCTAAATGATTTTGTTGATTAGAATCAACTATCATATAAATTTATGGCCTGAACTCCATAGTCTTTTCAAGATTCCTATTG...............................................................................................................................................................................................................................................................................................................................................................................................TTACTACTCCATGTATGGACATGTTGAGAAGCTAGCACAAGAGATAAAGAAAGGAGCCGCATCAGTTGAAGGCGTAGAAGCCAAACTATGGCAG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................GTACCAGAAACTCTTTCAGAAGAGGTTCTTGGAAAGATGGGTGGACCAGCAAAAGGCGATGCACCAATTATCACACCCAATGACCTTGCTGAAGCTGATGGCTTTGTGTTTGGATTCCCAACAAGATTTGGGATGATGGCTGCTCAGTTCAAGGCATTTCTTGATGCCACTGGTGGTCTCTGGAGAACTCAGCAGCTTGCAGGCAAGCCAGCGGGCCTTTTCTACAGTACTGGCTCTCAAGGAGGTGGCCAAGAGACTACTGC....................................................................................................GTTGACTGCAATTACTCAGCTTGTTCACCATGGAATGATCTTTGTCCCGATTGGTTACACATTTGGTGCTGGCATGTTCGAGATGGAGAAGATTAAAGGTGGAAGTCCTTACGGTGCAGGAACTTTTGCTGGAGATGGCTCTAGACAGCCAACAGATCTTTGACTGGAGCAAGCTTT-CACCAGGGAAAACACATTGCTACCAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0323A14-r86Tr/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E297099" ref_strand="+" ref_description="SGN-E297099 [cLEW-2-C19]">
      <seq>tctttatgagatgacattcttgaaattgaataatattaacttgaagttccaagatggagttggcgatattaccattggtgctaaatgattttgttgattagaatcaactatcatataaatttatggcctgaactccatagtcttttcaagattcctattgttactactccatgtatggacatgttgagaagctagcacaagagataaagaaaggagccgcatcagttgaaggcgtagaagccaaactatggcaggtaccagaaactctttcataagaggttcttggaaagatgggtggaccagctaaaggcgatgcaccaattatcacacccaatgaccttgctgaagctgatggctttgtgtttggattcccaacaagatttgggatgat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0323A14-r86Tr/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0323A14.3" temp_strand="+" temp_description="C02HBa0323A14.3  AC215439.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0323A14 sequenced_by:kribb upload_account_name:korea">
        <position start="122970" stop="124787"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="123270" g_stop="123429" g_length="160"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="160" r_length="160" r_score="0.994"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="123430" i_stop="123812" i_length="383">
            <donor d_prob="0.872" d_score="1.00"/>
            <acceptor a_prob="0.894" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="123813" g_stop="123906" g_length="94"/>
          <reference_exon_boundary r_type="cDNA" r_start="161" r_stop="254" r_length="94" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="123907" i_stop="124352" i_length="446">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="124353" g_stop="124487" g_length="135"/>
          <reference_exon_boundary r_type="cDNA" r_start="255" r_stop="391" r_length="137" r_score="0.956"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0323A14.3" gen_strand="+" ref_id="SGN-E297099" ref_strand="+">
        <total_alignment_score>0.982</total_alignment_score>
        <cumulative_length_of_scored_exons>389</cumulative_length_of_scored_exons>
        <coverage percentage="0.995" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0323A14.3" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E297099" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="123270" e_stop="123429"/>
          <exon e_start="123813" e_stop="123906"/>
          <exon e_start="124353" e_stop="124487"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCTTTATGAGATGACATTCTTGAAATTGAATAATATTAACTTGAAGTTCCAAGATGGAGTTGTCGATATTACCATTGGTGCTAAATGATTTTGTTGATTAGAATCAACTATCATATAAATTTATGGCCTGAACTCCATAGTCTTTTCAAGATTCCTATTGGTAAAAGAAAATCTAAAAATTTCCAGAACATGTCTCATTGGATGATTTGTGTTTTATTGAGAACTAAGTTCTGGCTTGTGCCATCTTTTGTTCCTGTTTTATCTCTAGAAGACTTCTGTGAAGCTGGATTCTAGTGCCTGATGTCCTCATCCGGAATGTATTTGGTTTTATTTTACTGGATATCTTGCGACTGTTCCAATCTGATCTGTGATTCTTATCCAATTTATAGTCAACTTTTGTGTGTTTCATTTGTGTATCTGATGCTGTGAAGTCTTATAAACCCCCCAAAAATTGTCTCCAAAAGTAGAATGGTTTGTATGATCTATTTGATCTTTATGCTTGGGGCTTGTAAAGCTAATGGTGAAAAGTATAAATGAATGCAGTTACTACTCCATGTATGGACATGTTGAGAAGCTAGCACAAGAGATAAAGAAAGGAGCCGCATCAGTTGAAGGCGTAGAAGCCAAACTATGGCAGGTCTGTTTACATTTCATTTTGAGTTGTTATTAATGTGAATGTGTTAGAGAATTTGGTATCCCTGAGAATTGAAGAAATTATGTGAGTTTGACTTTGCCAACGGAATGTCTCCTAAAGTGATATACATTAATTATTGGAAGTGTGGAATCTCTAGAGTCCTAGTCCTTTCCTTAAAATCCTGCTGAGAAATTATTGCCATGACATTTGATGTAGTTATTCCATGTTTGACTACTAATTGTTTAGTGGAGTCAATGCATTTAGACAAAGAAAACCATTTAGTTGACTTGTCTTTTCTCAAATTACTTGTGACTCACTTTTCCTTAATTTCTATGATTGATTTCATATACTGAACAGTGTACCTTTATAGGGCTTTGGAGATGAAAGGAGAAAAAACTAATGAACGTGTATCGTTACTGTGTTCTGTTGTTGATTTGTGAATGGCACAGGTACCAGAAACTCTTTCAGAAGAGGTTCTTGGAAAGATGGGTGGACCAGC-AAAAGCGATGC-CCAATTATCACACCCAATGACCTTGCTGAAGCTGATGGCTTTGTGTTTGGATTCCCAACAAGATTTGGGATGAT</genome_strand>
        <mrna_strand>TCTTTATGAGATGACATTCTTGAAATTGAATAATATTAACTTGAAGTTCCAAGATGGAGTTGGCGATATTACCATTGGTGCTAAATGATTTTGTTGATTAGAATCAACTATCATATAAATTTATGGCCTGAACTCCATAGTCTTTTCAAGATTCCTATTG...............................................................................................................................................................................................................................................................................................................................................................................................TTACTACTCCATGTATGGACATGTTGAGAAGCTAGCACAAGAGATAAAGAAAGGAGCCGCATCAGTTGAAGGCGTAGAAGCCAAACTATGGCAG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................GTACCAGAAACTCTTTCATAAGAGGTTCTTGGAAAGATGGGTGGACCAGCTAAAGGCGATGCACCAATTATCACACCCAATGACCTTGCTGAAGCTGATGGCTTTGTGTTTGGATTCCCAACAAGATTTGGGATGAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0323A14-r86Tr/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E343907" ref_strand="+" ref_description="SGN-E343907 [cTOF-12-H4]">
      <seq>gataaagaaaggagccgcatcagttgaaggcgtagaagccaaactatggcaggtaccagaaactctttcagaagaggttcttggaaagatgggtggaccagcaaaaggcgatgcaccaattatcacacccaatgaccttgctgaagctgatggctttgtgtttggattcccaacaagatttgggatgatggctgctcagttcaaggcatttcttgatgccactggtggtctctggagaactcagcagcttgcaggcaagccagcgggccttttctacagtactggctctcaaggaggtggccaagagactactgcgttgactgcaattactcagcttgttcaccatggaatgatctttgtcccgattggttacacatttggtgctggcatgttcgagatggagaagattaaaggtggaagtccttacggtgcaggaacttttgctggagatggctctagacagccaacagatcttgaactggagcaagctttccaccagggaaaacacattgctaccatcgcaaagaagctcaaaggctctgcttgattgtttcactacaaactcatgtcctattgcattctgctgtccatttttttttcccctatgtctagtatactcttgttttaagttgcatttctactacaaaaaacaataagtgattattatctattatatcagcatatat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0323A14-r86Tr/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0323A14.3" temp_strand="+" temp_description="C02HBa0323A14.3  AC215439.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0323A14 sequenced_by:kribb upload_account_name:korea">
        <position start="123555" stop="125385"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="123855" g_stop="123906" g_length="52"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="52" r_length="52" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="123907" i_stop="124352" i_length="446">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="124353" g_stop="124613" g_length="261"/>
          <reference_exon_boundary r_type="cDNA" r_start="53" r_stop="315" r_length="263" r_score="0.985"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="124614" i_stop="124713" i_length="100">
            <donor d_prob="0.956" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="124714" g_stop="125085" g_length="372"/>
          <reference_exon_boundary r_type="cDNA" r_start="316" r_stop="686" r_length="371" r_score="0.997"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0323A14.3" gen_strand="+" ref_id="SGN-E343907" ref_strand="+">
        <total_alignment_score>0.993</total_alignment_score>
        <cumulative_length_of_scored_exons>685</cumulative_length_of_scored_exons>
        <coverage percentage="0.999" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0323A14.3" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E343907" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="123855" e_stop="123906"/>
          <exon e_start="124353" e_stop="124613"/>
          <exon e_start="124714" e_stop="125085"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GATAAAGAAAGGAGCCGCATCAGTTGAAGGCGTAGAAGCCAAACTATGGCAGGTCTGTTTACATTTCATTTTGAGTTGTTATTAATGTGAATGTGTTAGAGAATTTGGTATCCCTGAGAATTGAAGAAATTATGTGAGTTTGACTTTGCCAACGGAATGTCTCCTAAAGTGATATACATTAATTATTGGAAGTGTGGAATCTCTAGAGTCCTAGTCCTTTCCTTAAAATCCTGCTGAGAAATTATTGCCATGACATTTGATGTAGTTATTCCATGTTTGACTACTAATTGTTTAGTGGAGTCAATGCATTTAGACAAAGAAAACCATTTAGTTGACTTGTCTTTTCTCAAATTACTTGTGACTCACTTTTCCTTAATTTCTATGATTGATTTCATATACTGAACAGTGTACCTTTATAGGGCTTTGGAGATGAAAGGAGAAAAAACTAATGAACGTGTATCGTTACTGTGTTCTGTTGTTGATTTGTGAATGGCACAGGTACCAGAAACTCTTTCAGAAGAGGTTCTTGGAAAGATGGGTGGACCAGCAAAA-GCGATGC-CCAATTATCACACCCAATGACCTTGCTGAAGCTGATGGCTTTGTGTTTGGATTCCCAACAAGATTTGGGATGATGGCTGCTCAGTTCAAGGCATTTCTTGATGCCACTGGTGGTCTCTGGAGAACTCAGCAGCTTGCAGGCAAGCCAGCGGGCCTTTTCTACAGTACTGGCTCTCAAGGAGGTGGCCAAGAGACTACTGCGTTAGTCCCTTCTCCTCAAAAAACTAACACATTTTGAGCTTGACTTGTGATTTGAAGATTCTAACTGAAAATTTTACATTAAAACTCAATAAATCTGCAGGTTGACTGCAATTACTCAGCTTGTTCACCATGGAATGATCTTTGTCCCGATTGGTTACACATTTGGTGCTGGCATGTTCGAGATGGAGAAGATTAAAGGTGGAAGTCCTTACGGTGCAGGAACTTTTGCTGGAGATGGCTCTAGACAGCCAACAGATCTTGAACTGGAGCAAGCTTTCCACCAGGGAAAACACATTGCTACCATCGCAAAGAAGCTCAAAGGCTCTGCTTGATTGTTTCACTACAAACTCATGTCCTATTGCATTCTGCTGTCCATTTTTTTTTCCCCTATGTCTAGTATACTCTTGTTTTAAGTTGCATTTCTACTACAAAAAAACAATAAGTGATTATTATCTATTATATCAGCATATAT</genome_strand>
        <mrna_strand>GATAAAGAAAGGAGCCGCATCAGTTGAAGGCGTAGAAGCCAAACTATGGCAG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................GTACCAGAAACTCTTTCAGAAGAGGTTCTTGGAAAGATGGGTGGACCAGCAAAAGGCGATGCACCAATTATCACACCCAATGACCTTGCTGAAGCTGATGGCTTTGTGTTTGGATTCCCAACAAGATTTGGGATGATGGCTGCTCAGTTCAAGGCATTTCTTGATGCCACTGGTGGTCTCTGGAGAACTCAGCAGCTTGCAGGCAAGCCAGCGGGCCTTTTCTACAGTACTGGCTCTCAAGGAGGTGGCCAAGAGACTACTGC....................................................................................................GTTGACTGCAATTACTCAGCTTGTTCACCATGGAATGATCTTTGTCCCGATTGGTTACACATTTGGTGCTGGCATGTTCGAGATGGAGAAGATTAAAGGTGGAAGTCCTTACGGTGCAGGAACTTTTGCTGGAGATGGCTCTAGACAGCCAACAGATCTTGAACTGGAGCAAGCTTTCCACCAGGGAAAACACATTGCTACCATCGCAAAGAAGCTCAAAGGCTCTGCTTGATTGTTTCACTACAAACTCATGTCCTATTGCATTCTGCTGTCCATTTTTTTTTCCCCTATGTCTAGTATACTCTTGTTTTAAGTTGCATTTCTACTAC-AAAAAACAATAAGTGATTATTATCTATTATATCAGCATATAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0323A14-r86Tr/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E541820" ref_strand="+" ref_description="SGN-E541820 [TUS-62-M24](-)">
      <seq>ttgtgtttggattcccaacaagatttgggatgatggctgctcagttcaaggcatttcttgatgccactggtggtctctggagaactcagcagcttgcaggcaagccagcgggccttttttacagtactggctctcaaggaggtggccaagagactactgcgttgactgcaattactcagcttgttcaccatggaatgatctttgtcccgattggttacacatttggtgctggcatgttcgagatggagaagattaaaggtggaagtccttacggtgcaggaacttttgctggagatggctctagacagccaacagatcttgaactggagcaagctttccaccagggaaaacacattgctaccatcgcaaagaagctcaaaggctttgcttgattgtttcactacaaactcatgtcctattgcattctgctgtccatttttttttcccctatgtctagtatactcttgttttaagttgcatttttactacaaaaaaacaataagtgattattatctattatatcagcatatatatatagggtcagtgtctatcacagtttacagaggttgtttacatgttctatgaatcatacttaattttttttttctcaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0323A14-r86Tr/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0323A14.3" temp_strand="+" temp_description="C02HBa0323A14.3  AC215439.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0323A14 sequenced_by:kribb upload_account_name:korea">
        <position start="124154" stop="125463"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="124454" g_stop="124613" g_length="160"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="160" r_length="160" r_score="0.994"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="124614" i_stop="124713" i_length="100">
            <donor d_prob="0.956" d_score="0.98"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="124714" g_stop="125162" g_length="449"/>
          <reference_exon_boundary r_type="cDNA" r_start="161" r_stop="609" r_length="449" r_score="0.996"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="610" polyA_stop="654"/>
      <MATCH_line gen_id="C02HBa0323A14.3" gen_strand="+" ref_id="SGN-E541820" ref_strand="+">
        <total_alignment_score>0.995</total_alignment_score>
        <cumulative_length_of_scored_exons>609</cumulative_length_of_scored_exons>
        <coverage percentage="0.931" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0323A14.3" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E541820" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="124454" e_stop="124613"/>
          <exon e_start="124714" e_stop="125162"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTGTGTTTGGATTCCCAACAAGATTTGGGATGATGGCTGCTCAGTTCAAGGCATTTCTTGATGCCACTGGTGGTCTCTGGAGAACTCAGCAGCTTGCAGGCAAGCCAGCGGGCCTTTTCTACAGTACTGGCTCTCAAGGAGGTGGCCAAGAGACTACTGCGTTAGTCCCTTCTCCTCAAAAAACTAACACATTTTGAGCTTGACTTGTGATTTGAAGATTCTAACTGAAAATTTTACATTAAAACTCAATAAATCTGCAGGTTGACTGCAATTACTCAGCTTGTTCACCATGGAATGATCTTTGTCCCGATTGGTTACACATTTGGTGCTGGCATGTTCGAGATGGAGAAGATTAAAGGTGGAAGTCCTTACGGTGCAGGAACTTTTGCTGGAGATGGCTCTAGACAGCCAACAGATCTTGAACTGGAGCAAGCTTTCCACCAGGGAAAACACATTGCTACCATCGCAAAGAAGCTCAAAGGCTCTGCTTGATTGTTTCACTACAAACTCATGTCCTATTGCATTCTGCTGTCCATTTTTTTTTCCCCTATGTCTAGTATACTCTTGTTTTAAGTTGCATTTCTACTACAAAAAAACAATAAGTGATTATTATCTATTATATCAGCATATATATATAGGGTCAGTGTCTATCACAGTTTACAGAGGTTGTTTACATGTTCTATGAATCATACTTAATTTTTTTTTTCTC</genome_strand>
        <mrna_strand>TTGTGTTTGGATTCCCAACAAGATTTGGGATGATGGCTGCTCAGTTCAAGGCATTTCTTGATGCCACTGGTGGTCTCTGGAGAACTCAGCAGCTTGCAGGCAAGCCAGCGGGCCTTTTTTACAGTACTGGCTCTCAAGGAGGTGGCCAAGAGACTACTGC....................................................................................................GTTGACTGCAATTACTCAGCTTGTTCACCATGGAATGATCTTTGTCCCGATTGGTTACACATTTGGTGCTGGCATGTTCGAGATGGAGAAGATTAAAGGTGGAAGTCCTTACGGTGCAGGAACTTTTGCTGGAGATGGCTCTAGACAGCCAACAGATCTTGAACTGGAGCAAGCTTTCCACCAGGGAAAACACATTGCTACCATCGCAAAGAAGCTCAAAGGCTTTGCTTGATTGTTTCACTACAAACTCATGTCCTATTGCATTCTGCTGTCCATTTTTTTTTCCCCTATGTCTAGTATACTCTTGTTTTAAGTTGCATTTTTACTACAAAAAAACAATAAGTGATTATTATCTATTATATCAGCATATATATATAGGGTCAGTGTCTATCACAGTTTACAGAGGTTGTTTACATGTTCTATGAATCATACTTAATTTTTTTTTTCTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0323A14-r86Tr/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E220596" ref_strand="+" ref_description="SGN-E220596 [cLEL-12-E23](-)">
      <seq>catttcttgatgccactggtggtctctggagaactcagcagctgcaggcaagccagcgggccttttctacagtactggctctcaaggaggtggccaagagactactgcgttgactgcaattactcagcttgttcaccatggaatgatctttgtcccgattggttacacatttggtgctggcatgttcgagatggagaagattaaaggtggaagtccttacggtgcaggaacttttgctggagatggctctagacagccaacagatcttgaactggagcaagctttccaccagggaaaacacattgctaccatcgcaaagaagctcaaaggctctgcttgattgtttcactacaaactcatgtcctattgcattctgctgtccatttttttttcccctatgtctagtatactcttgttttaagttgcaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0323A14-r86Tr/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0323A14.3" temp_strand="+" temp_description="C02HBa0323A14.3  AC215439.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0323A14 sequenced_by:kribb upload_account_name:korea">
        <position start="124205" stop="125332"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="124505" g_stop="124613" g_length="109"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="108" r_length="108" r_score="0.991"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="124614" i_stop="124713" i_length="100">
            <donor d_prob="0.956" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="124714" g_stop="125049" g_length="336"/>
          <reference_exon_boundary r_type="cDNA" r_start="109" r_stop="444" r_length="336" r_score="0.976"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0323A14.3" gen_strand="+" ref_id="SGN-E220596" ref_strand="+">
        <total_alignment_score>0.980</total_alignment_score>
        <cumulative_length_of_scored_exons>445</cumulative_length_of_scored_exons>
        <coverage percentage="1.002" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0323A14.3" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E220596" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="124505" e_stop="124613"/>
          <exon e_start="124714" e_stop="125049"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CATTTCTTGATGCCACTGGTGGTCTCTGGAGAACTCAGCAGCTTGCAGGCAAGCCAGCGGGCCTTTTCTACAGTACTGGCTCTCAAGGAGGTGGCCAAGAGACTACTGCGTTAGTCCCTTCTCCTCAAAAAACTAACACATTTTGAGCTTGACTTGTGATTTGAAGATTCTAACTGAAAATTTTACATTAAAACTCAATAAATCTGCAGGTTGACTGCAATTACTCAGCTTGTTCACCATGGAATGATCTTTGTCCCGATTGGTTACACATTTGGTGCTGGCATGTTCGAGATGGAGAAGATTAAAGGTGGAAGTCCTTACGGTGCAGGAACTTTTGCTGGAGATGGCTCTAGACAGCCAACAGATCTTGAACTGGAGCAAGCTTTCCACCAGGGAAAACACATTGCTACCATCGCAAAGAAGCTCAAAGGCTCTGCTTGATTGTTTCACTACAAACTCATGTCCTATTGCATTCTGCTGTCCATTTTTTTTTCCCCTATGTCTAGTATACTCTTGTTTTAAGTTGCATTTCTACTACAAAAAAA</genome_strand>
        <mrna_strand>CATTTCTTGATGCCACTGGTGGTCTCTGGAGAACTCAGCAGC-TGCAGGCAAGCCAGCGGGCCTTTTCTACAGTACTGGCTCTCAAGGAGGTGGCCAAGAGACTACTGC....................................................................................................GTTGACTGCAATTACTCAGCTTGTTCACCATGGAATGATCTTTGTCCCGATTGGTTACACATTTGGTGCTGGCATGTTCGAGATGGAGAAGATTAAAGGTGGAAGTCCTTACGGTGCAGGAACTTTTGCTGGAGATGGCTCTAGACAGCCAACAGATCTTGAACTGGAGCAAGCTTTCCACCAGGGAAAACACATTGCTACCATCGCAAAGAAGCTCAAAGGCTCTGCTTGATTGTTTCACTACAAACTCATGTCCTATTGCATTCTGCTGTCCATTTTTTTTTCCCCTATGTCTAGTATACTCTTGTTTTAAGTTGCAAAAAAAAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0323A14-r86Tr/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E735117" ref_strand="+" ref_description="SGN-E735117 [LB14BH12]">
      <seq>catcagcttgcaggcaagccagcgggccttttctacagtactggctctcaaggaggtggccaagagactactgcgttgactgcaattactcagcttgttcaccatggaatgatctttgtcccgattggttacacatttggtgctggcatgttcgagatggagaagattaaaggtggaagtccttacggtgcaggaacttttgctggagatggctctagacagccaacagatcttgaactggagcaagctttccaccagggaaaacacatcgctaccatcgcaaagaagctcaaaggctctgcttgattgtttcactacaaactcatgtcctattgcattctgctgtccatttttttttcccctatgtctagtatactcttgttttaagttgcatttctactacaaaaaaacaataagtgattattatctattatatcagcatatatatatagggtcagtgtctatcacagtttacagaggttgtttacatgttctatgaatcatacttaatttttttttttcaaaaaaaaaaaaaagaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0323A14-r86Tr/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0323A14.3" temp_strand="+" temp_description="C02HBa0323A14.3  AC215439.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0323A14 sequenced_by:kribb upload_account_name:korea">
        <position start="124240" stop="125463"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="124540" g_stop="124613" g_length="74"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="74" r_length="74" r_score="0.986"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="124614" i_stop="124713" i_length="100">
            <donor d_prob="0.956" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="124714" g_stop="125159" g_length="446"/>
          <reference_exon_boundary r_type="cDNA" r_start="75" r_stop="520" r_length="446" r_score="0.998"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="523" polyA_stop="552"/>
      <MATCH_line gen_id="C02HBa0323A14.3" gen_strand="+" ref_id="SGN-E735117" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>520</cumulative_length_of_scored_exons>
        <coverage percentage="0.942" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0323A14.3" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E735117" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="124540" e_stop="124613"/>
          <exon e_start="124714" e_stop="125159"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAGCAGCTTGCAGGCAAGCCAGCGGGCCTTTTCTACAGTACTGGCTCTCAAGGAGGTGGCCAAGAGACTACTGCGTTAGTCCCTTCTCCTCAAAAAACTAACACATTTTGAGCTTGACTTGTGATTTGAAGATTCTAACTGAAAATTTTACATTAAAACTCAATAAATCTGCAGGTTGACTGCAATTACTCAGCTTGTTCACCATGGAATGATCTTTGTCCCGATTGGTTACACATTTGGTGCTGGCATGTTCGAGATGGAGAAGATTAAAGGTGGAAGTCCTTACGGTGCAGGAACTTTTGCTGGAGATGGCTCTAGACAGCCAACAGATCTTGAACTGGAGCAAGCTTTCCACCAGGGAAAACACATTGCTACCATCGCAAAGAAGCTCAAAGGCTCTGCTTGATTGTTTCACTACAAACTCATGTCCTATTGCATTCTGCTGTCCATTTTTTTTTCCCCTATGTCTAGTATACTCTTGTTTTAAGTTGCATTTCTACTACAAAAAAACAATAAGTGATTATTATCTATTATATCAGCATATATATATAGGGTCAGTGTCTATCACAGTTTACAGAGGTTGTTTACATGTTCTATGAATCATACTTAATTTTTTTTTT</genome_strand>
        <mrna_strand>CATCAGCTTGCAGGCAAGCCAGCGGGCCTTTTCTACAGTACTGGCTCTCAAGGAGGTGGCCAAGAGACTACTGC....................................................................................................GTTGACTGCAATTACTCAGCTTGTTCACCATGGAATGATCTTTGTCCCGATTGGTTACACATTTGGTGCTGGCATGTTCGAGATGGAGAAGATTAAAGGTGGAAGTCCTTACGGTGCAGGAACTTTTGCTGGAGATGGCTCTAGACAGCCAACAGATCTTGAACTGGAGCAAGCTTTCCACCAGGGAAAACACATCGCTACCATCGCAAAGAAGCTCAAAGGCTCTGCTTGATTGTTTCACTACAAACTCATGTCCTATTGCATTCTGCTGTCCATTTTTTTTTCCCCTATGTCTAGTATACTCTTGTTTTAAGTTGCATTTCTACTACAAAAAAACAATAAGTGATTATTATCTATTATATCAGCATATATATATAGGGTCAGTGTCTATCACAGTTTACAGAGGTTGTTTACATGTTCTATGAATCATACTTAATTTTTTTTTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0323A14-r86Tr/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E357454" ref_strand="+" ref_description="SGN-E357454 [cTOS-23-I1]">
      <seq>tacagtactggctctcaaggaggtggccaagagactactgcgttgactgcaattactcagcttgttcaccatggaatgatctttgtcccgattggttacacatttggtgctggcatgttcgagatggagaagattaaaggtggaagtccttacggtgcaggaacttttgctggagatggctctagacagccaacagatcttgaactggagcaagctttccaccagggaaaacacattgctaccatcgcaaagaagctcaaaggctctgcttgattgtttcactacaaactcatgtcctattgcattctgctgtccatttttttttcccctatgtctagtatactcttgttttaagttgcatttctactacaaaaaaacaataagtgattattatctattatatcagcatatatatatagggtcagtgtctatcacagtttacagaggttgtttacatgttctatgaatcatacttaattttttttttctcaaaaaaaannnnanaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0323A14-r86Tr/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0323A14.3" temp_strand="+" temp_description="C02HBa0323A14.3  AC215439.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0323A14 sequenced_by:kribb upload_account_name:korea">
        <position start="124273" stop="125463"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="124573" g_stop="124613" g_length="41"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="41" r_length="41" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="124614" i_stop="124713" i_length="100">
            <donor d_prob="0.956" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="124714" g_stop="125162" g_length="449"/>
          <reference_exon_boundary r_type="cDNA" r_start="42" r_stop="490" r_length="449" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="503" polyA_stop="517"/>
      <MATCH_line gen_id="C02HBa0323A14.3" gen_strand="+" ref_id="SGN-E357454" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>490</cumulative_length_of_scored_exons>
        <coverage percentage="0.948" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0323A14.3" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E357454" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="124573" e_stop="124613"/>
          <exon e_start="124714" e_stop="125162"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TACAGTACTGGCTCTCAAGGAGGTGGCCAAGAGACTACTGCGTTAGTCCCTTCTCCTCAAAAAACTAACACATTTTGAGCTTGACTTGTGATTTGAAGATTCTAACTGAAAATTTTACATTAAAACTCAATAAATCTGCAGGTTGACTGCAATTACTCAGCTTGTTCACCATGGAATGATCTTTGTCCCGATTGGTTACACATTTGGTGCTGGCATGTTCGAGATGGAGAAGATTAAAGGTGGAAGTCCTTACGGTGCAGGAACTTTTGCTGGAGATGGCTCTAGACAGCCAACAGATCTTGAACTGGAGCAAGCTTTCCACCAGGGAAAACACATTGCTACCATCGCAAAGAAGCTCAAAGGCTCTGCTTGATTGTTTCACTACAAACTCATGTCCTATTGCATTCTGCTGTCCATTTTTTTTTCCCCTATGTCTAGTATACTCTTGTTTTAAGTTGCATTTCTACTACAAAAAAACAATAAGTGATTATTATCTATTATATCAGCATATATATATAGGGTCAGTGTCTATCACAGTTTACAGAGGTTGTTTACATGTTCTATGAATCATACTTAATTTTTTTTTTCTC</genome_strand>
        <mrna_strand>TACAGTACTGGCTCTCAAGGAGGTGGCCAAGAGACTACTGC....................................................................................................GTTGACTGCAATTACTCAGCTTGTTCACCATGGAATGATCTTTGTCCCGATTGGTTACACATTTGGTGCTGGCATGTTCGAGATGGAGAAGATTAAAGGTGGAAGTCCTTACGGTGCAGGAACTTTTGCTGGAGATGGCTCTAGACAGCCAACAGATCTTGAACTGGAGCAAGCTTTCCACCAGGGAAAACACATTGCTACCATCGCAAAGAAGCTCAAAGGCTCTGCTTGATTGTTTCACTACAAACTCATGTCCTATTGCATTCTGCTGTCCATTTTTTTTTCCCCTATGTCTAGTATACTCTTGTTTTAAGTTGCATTTCTACTACAAAAAAACAATAAGTGATTATTATCTATTATATCAGCATATATATATAGGGTCAGTGTCTATCACAGTTTACAGAGGTTGTTTACATGTTCTATGAATCATACTTAATTTTTTTTTTCTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0323A14-r86Tr/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E353483" ref_strand="+" ref_description="SGN-E353483 [cTOS-15-O13]">
      <seq>agactactgcgttgactgcaattactcagcttgttcaccatggaatgatctttgtcccgattggttacacatttggtgctggcatgttcgagatggagaagattaaaggtggaagtccttacggtgcaggaacttttgctggagatggctctagacagccaacagatcttgaactggagcaagctttccaccagggaaaacacattgctaccatcgcaaagaagctcaaaggctctgcttgattgtttcactacaaactcatgtcctattgcattctgctgtccatttttttttcccctatgtctagtatactcttgttttaagttgcatttctactacaaaaaaacaataagtgattattatctattatatcagcatatatatatagggtcagtgtctatcacagtttacagaagttgtttacatgttctatgaatcatacttaattttttttttctcatttcataatcaatggctacagcaacaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0323A14-r86Tr/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0323A14.3" temp_strand="+" temp_description="C02HBa0323A14.3  AC215439.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0323A14 sequenced_by:kribb upload_account_name:korea">
        <position start="124408" stop="125490"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="124604" g_stop="124613" g_length="10"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="10" r_length="10" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="124614" i_stop="124713" i_length="100">
            <donor d_prob="0.956" d_score="0.00"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="124714" g_stop="125189" g_length="476"/>
          <reference_exon_boundary r_type="cDNA" r_start="11" r_stop="486" r_length="476" r_score="0.998"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0323A14.3" gen_strand="+" ref_id="SGN-E353483" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>486</cumulative_length_of_scored_exons>
        <coverage percentage="0.984" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0323A14.3" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E353483" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="124604" e_stop="124613"/>
          <exon e_start="124714" e_stop="125189"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGACTACTGCGTTAGTCCCTTCTCCTCAAAAAACTAACACATTTTGAGCTTGACTTGTGATTTGAAGATTCTAACTGAAAATTTTACATTAAAACTCAATAAATCTGCAGGTTGACTGCAATTACTCAGCTTGTTCACCATGGAATGATCTTTGTCCCGATTGGTTACACATTTGGTGCTGGCATGTTCGAGATGGAGAAGATTAAAGGTGGAAGTCCTTACGGTGCAGGAACTTTTGCTGGAGATGGCTCTAGACAGCCAACAGATCTTGAACTGGAGCAAGCTTTCCACCAGGGAAAACACATTGCTACCATCGCAAAGAAGCTCAAAGGCTCTGCTTGATTGTTTCACTACAAACTCATGTCCTATTGCATTCTGCTGTCCATTTTTTTTTCCCCTATGTCTAGTATACTCTTGTTTTAAGTTGCATTTCTACTACAAAAAAACAATAAGTGATTATTATCTATTATATCAGCATATATATATAGGGTCAGTGTCTATCACAGTTTACAGAGGTTGTTTACATGTTCTATGAATCATACTTAATTTTTTTTTTCTCATTTCATAATCAATGGCTACAGCAACA</genome_strand>
        <mrna_strand>AGACTACTGC....................................................................................................GTTGACTGCAATTACTCAGCTTGTTCACCATGGAATGATCTTTGTCCCGATTGGTTACACATTTGGTGCTGGCATGTTCGAGATGGAGAAGATTAAAGGTGGAAGTCCTTACGGTGCAGGAACTTTTGCTGGAGATGGCTCTAGACAGCCAACAGATCTTGAACTGGAGCAAGCTTTCCACCAGGGAAAACACATTGCTACCATCGCAAAGAAGCTCAAAGGCTCTGCTTGATTGTTTCACTACAAACTCATGTCCTATTGCATTCTGCTGTCCATTTTTTTTTCCCCTATGTCTAGTATACTCTTGTTTTAAGTTGCATTTCTACTACAAAAAAACAATAAGTGATTATTATCTATTATATCAGCATATATATATAGGGTCAGTGTCTATCACAGTTTACAGAAGTTGTTTACATGTTCTATGAATCATACTTAATTTTTTTTTTCTCATTTCATAATCAATGGCTACAGCAACA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0323A14-r86Tr/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E350273" ref_strand="+" ref_description="SGN-E350273 [cTOS-4-D12]">
      <seq>agactactgcgttgactgcaattactcagcttgttcaccatggaatgatctttgtcccgattggttacacatttggtgctggcatgttcgagatggagaagattaaaggtggaagtccttacggtgcaggaacttttgctggagatggctctagacagccaacagatcttgaactggagcaagctttccaccagggaaaacacattgctaccatcgcaaagaagctcaaaggctctgcttgattgtttcactacaaactcatgtcctattgcattctgctgtccatttttttttcccctatgtctagtatactcttgttttaagttgcatttctactacaaaaaaacaataagtgattattatctattatatcagcatatatatatagggtcagtgtctatcacagtttacagaggttgtttacatgttctatgaatcatacttaattttttttttctcatttcataatcaatggctacagcaacaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0323A14-r86Tr/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0323A14.3" temp_strand="+" temp_description="C02HBa0323A14.3  AC215439.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0323A14 sequenced_by:kribb upload_account_name:korea">
        <position start="124408" stop="125490"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="124604" g_stop="124613" g_length="10"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="10" r_length="10" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="124614" i_stop="124713" i_length="100">
            <donor d_prob="0.956" d_score="0.00"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="124714" g_stop="125189" g_length="476"/>
          <reference_exon_boundary r_type="cDNA" r_start="11" r_stop="486" r_length="476" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0323A14.3" gen_strand="+" ref_id="SGN-E350273" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>486</cumulative_length_of_scored_exons>
        <coverage percentage="0.984" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0323A14.3" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E350273" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="124604" e_stop="124613"/>
          <exon e_start="124714" e_stop="125189"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGACTACTGCGTTAGTCCCTTCTCCTCAAAAAACTAACACATTTTGAGCTTGACTTGTGATTTGAAGATTCTAACTGAAAATTTTACATTAAAACTCAATAAATCTGCAGGTTGACTGCAATTACTCAGCTTGTTCACCATGGAATGATCTTTGTCCCGATTGGTTACACATTTGGTGCTGGCATGTTCGAGATGGAGAAGATTAAAGGTGGAAGTCCTTACGGTGCAGGAACTTTTGCTGGAGATGGCTCTAGACAGCCAACAGATCTTGAACTGGAGCAAGCTTTCCACCAGGGAAAACACATTGCTACCATCGCAAAGAAGCTCAAAGGCTCTGCTTGATTGTTTCACTACAAACTCATGTCCTATTGCATTCTGCTGTCCATTTTTTTTTCCCCTATGTCTAGTATACTCTTGTTTTAAGTTGCATTTCTACTACAAAAAAACAATAAGTGATTATTATCTATTATATCAGCATATATATATAGGGTCAGTGTCTATCACAGTTTACAGAGGTTGTTTACATGTTCTATGAATCATACTTAATTTTTTTTTTCTCATTTCATAATCAATGGCTACAGCAACA</genome_strand>
        <mrna_strand>AGACTACTGC....................................................................................................GTTGACTGCAATTACTCAGCTTGTTCACCATGGAATGATCTTTGTCCCGATTGGTTACACATTTGGTGCTGGCATGTTCGAGATGGAGAAGATTAAAGGTGGAAGTCCTTACGGTGCAGGAACTTTTGCTGGAGATGGCTCTAGACAGCCAACAGATCTTGAACTGGAGCAAGCTTTCCACCAGGGAAAACACATTGCTACCATCGCAAAGAAGCTCAAAGGCTCTGCTTGATTGTTTCACTACAAACTCATGTCCTATTGCATTCTGCTGTCCATTTTTTTTTCCCCTATGTCTAGTATACTCTTGTTTTAAGTTGCATTTCTACTACAAAAAAACAATAAGTGATTATTATCTATTATATCAGCATATATATATAGGGTCAGTGTCTATCACAGTTTACAGAGGTTGTTTACATGTTCTATGAATCATACTTAATTTTTTTTTTCTCATTTCATAATCAATGGCTACAGCAACA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0323A14-r86Tr/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E352302" ref_strand="+" ref_description="SGN-E352302 [cTOS-9-I17]">
      <seq>agactactgcgttgactgcaattactcagcttgttcaccatggaatgatctttgtcccgattggttacacatttggtgctggcatgttcgagatggagaagattaaaggtggaagtccttacggtgcaggaacttttgctggagatggctctagacagccaacagatcttgaactggagcaagctttccaccagggaaaacacattgctaccatcgcaaagaagctcaaaggctctgcttgattgtttcactacaaactcatgtcctattgcattctgctgtccatttttttttcccctatgtctagtatactcttgttttaagttgcatttctactacaaaaaaacaataagtgattattatctattatatcagcatatatatatagggtcagtgtctatcacagtttacagaggttgtttacatgttctatgaatcatacttaattttttttttctcatttcataatcaatggctacagcaacaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0323A14-r86Tr/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0323A14.3" temp_strand="+" temp_description="C02HBa0323A14.3  AC215439.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0323A14 sequenced_by:kribb upload_account_name:korea">
        <position start="124408" stop="125490"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="124604" g_stop="124613" g_length="10"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="10" r_length="10" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="124614" i_stop="124713" i_length="100">
            <donor d_prob="0.956" d_score="0.00"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="124714" g_stop="125189" g_length="476"/>
          <reference_exon_boundary r_type="cDNA" r_start="11" r_stop="486" r_length="476" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0323A14.3" gen_strand="+" ref_id="SGN-E352302" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>486</cumulative_length_of_scored_exons>
        <coverage percentage="0.984" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0323A14.3" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E352302" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="124604" e_stop="124613"/>
          <exon e_start="124714" e_stop="125189"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGACTACTGCGTTAGTCCCTTCTCCTCAAAAAACTAACACATTTTGAGCTTGACTTGTGATTTGAAGATTCTAACTGAAAATTTTACATTAAAACTCAATAAATCTGCAGGTTGACTGCAATTACTCAGCTTGTTCACCATGGAATGATCTTTGTCCCGATTGGTTACACATTTGGTGCTGGCATGTTCGAGATGGAGAAGATTAAAGGTGGAAGTCCTTACGGTGCAGGAACTTTTGCTGGAGATGGCTCTAGACAGCCAACAGATCTTGAACTGGAGCAAGCTTTCCACCAGGGAAAACACATTGCTACCATCGCAAAGAAGCTCAAAGGCTCTGCTTGATTGTTTCACTACAAACTCATGTCCTATTGCATTCTGCTGTCCATTTTTTTTTCCCCTATGTCTAGTATACTCTTGTTTTAAGTTGCATTTCTACTACAAAAAAACAATAAGTGATTATTATCTATTATATCAGCATATATATATAGGGTCAGTGTCTATCACAGTTTACAGAGGTTGTTTACATGTTCTATGAATCATACTTAATTTTTTTTTTCTCATTTCATAATCAATGGCTACAGCAACA</genome_strand>
        <mrna_strand>AGACTACTGC....................................................................................................GTTGACTGCAATTACTCAGCTTGTTCACCATGGAATGATCTTTGTCCCGATTGGTTACACATTTGGTGCTGGCATGTTCGAGATGGAGAAGATTAAAGGTGGAAGTCCTTACGGTGCAGGAACTTTTGCTGGAGATGGCTCTAGACAGCCAACAGATCTTGAACTGGAGCAAGCTTTCCACCAGGGAAAACACATTGCTACCATCGCAAAGAAGCTCAAAGGCTCTGCTTGATTGTTTCACTACAAACTCATGTCCTATTGCATTCTGCTGTCCATTTTTTTTTCCCCTATGTCTAGTATACTCTTGTTTTAAGTTGCATTTCTACTACAAAAAAACAATAAGTGATTATTATCTATTATATCAGCATATATATATAGGGTCAGTGTCTATCACAGTTTACAGAGGTTGTTTACATGTTCTATGAATCATACTTAATTTTTTTTTTCTCATTTCATAATCAATGGCTACAGCAACA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0323A14-r86Tr/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E309133" ref_strand="+" ref_description="SGN-E309133 [cLEZ-1-K11](-)">
      <seq>ctactgcgttgactgcaattactcagcttgttcaccatggaatgatctttgtcccgattggttacacatttggtgctggcatgttcgagatggagaagattaaaggtggaagtccttacggtgcaggaacttttgctggagatggctctagacagccaacagatcttgaactggagcaagctttccaccagggaaaacacattgctaccatcgcaaagaagctcaaaggctctgcttgattgtttcactacaaactcatgtcctattgcattctgctgtccattttttttcccctatgtctagtatactcttgttttaagttgcatttctactacaaaaaaacaataagtgattattatctattatatcagcatatatatatagggtcagtgtctatcacagtttacagaggttgtttacatgttctatgaatcatacttaattttttttttctcatttcataatcaatggctacagcaacaatccctttatctctctctctcccaaccccccaattatgttactcgatgtcaatttgataagaagatttttgtgatccaatcccaataagttgtctcaaactccaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0323A14-r86Tr/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0323A14.3" temp_strand="+" temp_description="C02HBa0323A14.3  AC215439.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0323A14 sequenced_by:kribb upload_account_name:korea">
        <position start="124408" stop="125595"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="124607" g_stop="124613" g_length="7"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="7" r_length="7" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="124614" i_stop="124713" i_length="100">
            <donor d_prob="0.956" d_score="0.00"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="124714" g_stop="125294" g_length="581"/>
          <reference_exon_boundary r_type="cDNA" r_start="8" r_stop="587" r_length="580" r_score="0.995"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0323A14.3" gen_strand="+" ref_id="SGN-E309133" ref_strand="+">
        <total_alignment_score>0.995</total_alignment_score>
        <cumulative_length_of_scored_exons>588</cumulative_length_of_scored_exons>
        <coverage percentage="0.987" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0323A14.3" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E309133" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="124607" e_stop="124613"/>
          <exon e_start="124714" e_stop="125294"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTACTGCGTTAGTCCCTTCTCCTCAAAAAACTAACACATTTTGAGCTTGACTTGTGATTTGAAGATTCTAACTGAAAATTTTACATTAAAACTCAATAAATCTGCAGGTTGACTGCAATTACTCAGCTTGTTCACCATGGAATGATCTTTGTCCCGATTGGTTACACATTTGGTGCTGGCATGTTCGAGATGGAGAAGATTAAAGGTGGAAGTCCTTACGGTGCAGGAACTTTTGCTGGAGATGGCTCTAGACAGCCAACAGATCTTGAACTGGAGCAAGCTTTCCACCAGGGAAAACACATTGCTACCATCGCAAAGAAGCTCAAAGGCTCTGCTTGATTGTTTCACTACAAACTCATGTCCTATTGCATTCTGCTGTCCATTTTTTTTTCCCCTATGTCTAGTATACTCTTGTTTTAAGTTGCATTTCTACTACAAAAAAACAATAAGTGATTATTATCTATTATATCAGCATATATATATAGGGTCAGTGTCTATCACAGTTTACAGAGGTTGTTTACATGTTCTATGAATCATACTTAATTTTTTTTTTCTCATTTCATAATCAATGGCTACAGCAACAATCCCTTTATCTCTCTCTCTCCCAACCCCCCAATTATGTTACTCGATGTCAATTTGATAAGAAGATTTTTGTGATCCAATCCCAATAAGTTGGCTCAAACTACAA</genome_strand>
        <mrna_strand>CTACTGC....................................................................................................GTTGACTGCAATTACTCAGCTTGTTCACCATGGAATGATCTTTGTCCCGATTGGTTACACATTTGGTGCTGGCATGTTCGAGATGGAGAAGATTAAAGGTGGAAGTCCTTACGGTGCAGGAACTTTTGCTGGAGATGGCTCTAGACAGCCAACAGATCTTGAACTGGAGCAAGCTTTCCACCAGGGAAAACACATTGCTACCATCGCAAAGAAGCTCAAAGGCTCTGCTTGATTGTTTCACTACAAACTCATGTCCTATTGCATTCTGCTGTCCA-TTTTTTTTCCCCTATGTCTAGTATACTCTTGTTTTAAGTTGCATTTCTACTACAAAAAAACAATAAGTGATTATTATCTATTATATCAGCATATATATATAGGGTCAGTGTCTATCACAGTTTACAGAGGTTGTTTACATGTTCTATGAATCATACTTAATTTTTTTTTTCTCATTTCATAATCAATGGCTACAGCAACAATCCCTTTATCTCTCTCTCTCCCAACCCCCCAATTATGTTACTCGATGTCAATTTGATAAGAAGATTTTTGTGATCCAATCCCAATAAGTTGTCTCAAACTCCAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0323A14-r86Tr/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E220459" ref_strand="+" ref_description="SGN-E220459 [cLEL-12-E23](-)">
      <seq>tcttgaactggagcaagctttccgccagggaaatcacactgctaccatcgcaaagaagctcaaaggctctgcttgattgtttcactacaaactcatgtcctattgcattctgctgtccatttttttttcccctatgtctagtatactcttgttttaagctgcaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0323A14-r86Tr/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0323A14.3" temp_strand="+" temp_description="C02HBa0323A14.3  AC215439.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0323A14 sequenced_by:kribb upload_account_name:korea">
        <position start="124570" stop="125332"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="124870" g_stop="125049" g_length="180"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="180" r_length="180" r_score="0.933"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0323A14.3" gen_strand="+" ref_id="SGN-E220459" ref_strand="+">
        <total_alignment_score>0.933</total_alignment_score>
        <cumulative_length_of_scored_exons>180</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0323A14.3" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E220459" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="124870" e_stop="125049"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCTTGAACTGGAGCAAGCTTTCCACCAGGGAAAACACATTGCTACCATCGCAAAGAAGCTCAAAGGCTCTGCTTGATTGTTTCACTACAAACTCATGTCCTATTGCATTCTGCTGTCCATTTTTTTTTCCCCTATGTCTAGTATACTCTTGTTTTAAGTTGCATTTCTACTACAAAAAAA</genome_strand>
        <mrna_strand>TCTTGAACTGGAGCAAGCTTTCCGCCAGGGAAATCACACTGCTACCATCGCAAAGAAGCTCAAAGGCTCTGCTTGATTGTTTCACTACAAACTCATGTCCTATTGCATTCTGCTGTCCATTTTTTTTTCCCCTATGTCTAGTATACTCTTGTTTTAAGCTGCAAAAAAAAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
    <total_number_ESTs_reported>52</total_number_ESTs_reported>
    </alignment_module>
  <PGL_module xmlns="http://www.genomethreader.org/GTH_output/PGL_module/">
    <predicted_gene_location>
      <PGL_line PGL_serial="1" PGL_strand="+" PGL_start="5003" PGL_stop="5430"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="5003" e_stop="5430"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.928"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.928">
            <gDNA_exon_boundary e_start="5003" e_stop="5430" e_length="428"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="5003" stop="5430"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E217990" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="1" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>ATGATCTTCAATAGAATCTACAGGATTTGAAGGTATATTATCATCTGCATGATCAAACATATCCATTTGTATAGGAGCAGTATAATCTGTGGTTGATGATACTTCTTTTGTGATAACATCTTTGAAAGGAAATGAATCTTCCATGAATGTAACCTCCCTGCTCACTGATATGACATGAGTCTCCAAATCCATGACTTTATATCCTTTTTGTGTCTCTGAGTACCCAATGAAGACTGATCTTGTTGCTCTTGGAGCAAATTTATCTCTTCTTGGCAAAACTGATACAAAACATAAACATCCAAACACCCTCAAATGTTCTAGATTAGGTGCTCGTTTATAAAGAAGTTCATATGGTGACTTCCCTTGTAATACAGTTGTAGGCATTCTGTTTATCAGATAAGCTGCAGTTTTAACACAATTTCCCCAAA</gDNA_template>
            <first_frame> M  I  F  N  R  I  Y  R  I  *  R  Y  I  I  I  C  M  I  K  H  I  H  L  Y  R  S  S  I  I  C  G  *  *  Y  F  F  C  D  N  I  F  E  R  K  *  I  F  H  E  C  N  L  P  A  H  *  Y  D  M  S  L  Q  I  H  D  F  I  S  F  L  C  L  *  V  P  N  E  D  *  S  C  C  S  W  S  K  F  I  S  S  W  Q  N  *  Y  K  T  *  T  S  K  H  P  Q  M  F  *  I  R  C  S  F  I  K  K  F  I  W  *  L  P  L  *  Y  S  C  R  H  S  V  Y  Q  I  S  C  S  F  N  T  I  S  P   </first_frame>
            <second_frame>  *  S  S  I  E  S  T  G  F  E  G  I  L  S  S  A  *  S  N  I  S  I  C  I  G  A  V  *  S  V  V  D  D  T  S  F  V  I  T  S  L  K  G  N  E  S  S  M  N  V  T  S  L  L  T  D  M  T  *  V  S  K  S  M  T  L  Y  P  F  C  V  S  E  Y  P  M  K  T  D  L  V  A  L  G  A  N  L  S  L  L  G  K  T  D  T  K  H  K  H  P  N  T  L  K  C  S  R  L  G  A  R  L  *  R  S  S  Y  G  D  F  P  C  N  T  V  V  G  I  L  F  I  R  *  A  A  V  L  T  Q  F  P  Q  </second_frame>
            <third_frame>   D  L  Q  *  N  L  Q  D  L  K  V  Y  Y  H  L  H  D  Q  T  Y  P  F  V  *  E  Q  Y  N  L  W  L  M  I  L  L  L  *  *  H  L  *  K  E  M  N  L  P  *  M  *  P  P  C  S  L  I  *  H  E  S  P  N  P  *  L  Y  I  L  F  V  S  L  S  T  Q  *  R  L  I  L  L  L  L  E  Q  I  Y  L  F  L  A  K  L  I  Q  N  I  N  I  Q  T  P  S  N  V  L  D  *  V  L  V  Y  K  E  V  H  M  V  T  S  L  V  I  Q  L  *  A  F  C  L  S  D  K  L  Q  F  *  H  N  F  P  K </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <none gDNA_id="C02HBa0323A14.3"/>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="2" PGL_strand="+" PGL_start="22049" PGL_stop="22530"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="22049" e_stop="22530"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="22049" e_stop="22530" e_length="482"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="22049" stop="22530"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E349461" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="22049" stop="22530"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E356888" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="2" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>GGACCTGGTGGATCGTTCAATTTGGGATGGTTGTCAACACAATGAAGCATTGAGATGTATACACTTGGCATTGCTTTGTGTTCAAGATTTGGCGGCTCACAGACCAAACATGTCTTCTGTGGTTCTGATGCTGGAAACTGACAATGTAAGGTTGCCCTTGCCTAGGCAACCTACCTATACTTCAATGAGAAGATCTGTGGATGAAGATATATGGCATGGGAATCAGGATTTAACATCTTCCAACAATGTCACAGTTAGTGTACTAATAGGTAGATGATTGGTTAATGCTTGTTCCTTCTTACATACCTGCTTCATTTGAAGAGAATGGGATCAAGTAGTGTAACTATGTAAAGTTATAGTTGGAACTATGTTCATAATTTTTTGTTAGCTAGGTAAACTTTCGCACATCATGTGTATTGTAATTAGAAGGTGGTTCAGCTCTGCAAGCTGAAAGAGAGATATGTCACAACCTTGTTCAATCG</gDNA_template>
            <first_frame> G  P  G  G  S  F  N  L  G  W  L  S  T  Q  *  S  I  E  M  Y  T  L  G  I  A  L  C  S  R  F  G  G  S  Q  T  K  H  V  F  C  G  S  D  A  G  N  *  Q  C  K  V  A  L  A  *  A  T  Y  L  Y  F  N  E  K  I  C  G  *  R  Y  M  A  W  E  S  G  F  N  I  F  Q  Q  C  H  S  *  C  T  N  R  *  M  I  G  *  C  L  F  L  L  T  Y  L  L  H  L  K  R  M  G  S  S  S  V  T  M  *  S  Y  S  W  N  Y  V  H  N  F  L  L  A  R  *  T  F  A  H  H  V  Y  C  N  *  K  V  V  Q  L  C  K  L  K  E  R  Y  V  T  T  L  F  N   </first_frame>
            <second_frame>  D  L  V  D  R  S  I  W  D  G  C  Q  H  N  E  A  L  R  C  I  H  L  A  L  L  C  V  Q  D  L  A  A  H  R  P  N  M  S  S  V  V  L  M  L  E  T  D  N  V  R  L  P  L  P  R  Q  P  T  Y  T  S  M  R  R  S  V  D  E  D  I  W  H  G  N  Q  D  L  T  S  S  N  N  V  T  V  S  V  L  I  G  R  *  L  V  N  A  C  S  F  L  H  T  C  F  I  *  R  E  W  D  Q  V  V  *  L  C  K  V  I  V  G  T  M  F  I  I  F  C  *  L  G  K  L  S  H  I  M  C  I  V  I  R  R  W  F  S  S  A  S  *  K  R  D  M  S  Q  P  C  S  I  </second_frame>
            <third_frame>   T  W  W  I  V  Q  F  G  M  V  V  N  T  M  K  H  *  D  V  Y  T  W  H  C  F  V  F  K  I  W  R  L  T  D  Q  T  C  L  L  W  F  *  C  W  K  L  T  M  *  G  C  P  C  L  G  N  L  P  I  L  Q  *  E  D  L  W  M  K  I  Y  G  M  G  I  R  I  *  H  L  P  T  M  S  Q  L  V  Y  *  *  V  D  D  W  L  M  L  V  P  S  Y  I  P  A  S  F  E  E  N  G  I  K  *  C  N  Y  V  K  L  *  L  E  L  C  S  *  F  F  V  S  *  V  N  F  R  T  S  C  V  L  *  L  E  G  G  S  A  L  Q  A  E  R  E  I  C  H  N  L  V  Q  S </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02HBa0323A14.3" strand="+"/>
                <serials PGL_serial="2" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="22050" stop="22325"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>273</number_coding_nucleotides>
                  <number_encoded_amino_acids>91</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>DLVDRSIWDGCQHNEALRCIHLALLCVQDLAAHRPNMSSVVLMLETDNVRLPLPRQPTYTSMRRSVDEDIWHGNQDLTSSNNVTVSVLIGR*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="3" PGL_strand="+" PGL_start="23882" PGL_stop="27074"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="23882" e_stop="24213"/>
            <exon e_start="26703" e_stop="26914"/>
            <exon e_start="27068" e_stop="27074"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.999" acc_prob="0.773" e_score="1.000"/>
          <exon-intron don_prob="0.999" acc_prob="0.983" e_score="1.000"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="23882" e_stop="24213" e_length="332"/>
          </exon>
          <intron i_serial="1" don_prob="0.999" acc_prob="0.773">
            <gDNA_intron_boundary i_start="24214" i_stop="26702" i_length="2489"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="26703" e_stop="26914" e_length="212"/>
          </exon>
          <intron i_serial="2" don_prob="0.999" acc_prob="0.983">
            <gDNA_intron_boundary i_start="26915" i_stop="27067" i_length="153"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="27068" e_stop="27074" e_length="7"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="23882" stop="24213"/>
              <exon start="26703" stop="26914"/>
              <exon start="27068" stop="27074"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E208421" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="23883" stop="24213"/>
              <exon start="26703" stop="26890"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E396617" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="23884" stop="24213"/>
              <exon start="26703" stop="26914"/>
              <exon start="27068" stop="27074"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E208418" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="3" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>GGAAAACCCCCATTTTTTCAACCCTAAAAACCCGTTTCGTCTTACTGTTCGATTCTCCTCTTTTCCACTGTTCCCAGCAGAATAGGACTCAATTGCTCAAAATTGGTTAATGGTGTTTCGTGTAGTACCGTTGGCTCTGGGAATTTGGTGAGATCGATTAAAAGATCAATAAAATATCCCCCATTCAAGCTGCACTTCCAACAAGTGGCTCAGAGTTGGCAAGTTTTGCCAGGAAGTTTATTGTAGCCCTCCTTCACCGTCCAGTTCCAGTTTGGCACCTGTACTCGAAGCTATAATCAGATCCTATCTTACCAAACCCCGAAGCTATAACG : GACAGAAGAGAAAAGGAGCCAGAAGCTTCAGTCTGGGTGATTCATGCTACATTTCAAAAGACTACACAGTGGAAAGTTTATGGATTGGTAATTTAAAGAAAGAAGATCCAATTGAACTTCCACTGATTGAATTTGAGGTAATTGCCTCAGCAACAAACAACTTCAATGAAGAAAACAAACTCGGGGAAGGAGGTTTTGGTCCAGTTTTCAAG : GGAAAGC</gDNA_template>
            <first_frame> G  K  P  P  F  F  Q  P  *  K  P  V  S  S  Y  C  S  I  L  L  F  S  T  V  P  S  R  I  G  L  N  C  S  K  L  V  N  G  V  S  C  S  T  V  G  S  G  N  L  V  R  S  I  K  R  S  I  K  Y  P  P  F  K  L  H  F  Q  Q  V  A  Q  S  W  Q  V  L  P  G  S  L  L  *  P  S  F  T  V  Q  F  Q  F  G  T  C  T  R  S  Y  N  Q  I  L  S  Y  Q  T  P  K  L  *  R :   T  E  E  K  R  S  Q  K  L  Q  S  G  *  F  M  L  H  F  K  R  L  H  S  G  K  F  M  D  W  *  F  K  E  R  R  S  N  *  T  S  T  D  *  I  *  G  N  C  L  S  N  K  Q  L  Q  *  R  K  Q  T  R  G  R  R  F  W  S  S  F  Q   : G  K   </first_frame>
            <second_frame>  E  N  P  H  F  F  N  P  K  N  P  F  R  L  T  V  R  F  S  S  F  P  L  F  P  A  E  *  D  S  I  A  Q  N  W  L  M  V  F  R  V  V  P  L  A  L  G  I  W  *  D  R  L  K  D  Q  *  N  I  P  H  S  S  C  T  S  N  K  W  L  R  V  G  K  F  C  Q  E  V  Y  C  S  P  P  S  P  S  S  S  S  L  A  P  V  L  E  A  I  I  R  S  Y  L  T  K  P  R  S  Y  N   : G  Q  K  R  K  G  A  R  S  F  S  L  G  D  S  C  Y  I  S  K  D  Y  T  V  E  S  L  W  I  G  N  L  K  K  E  D  P  I  E  L  P  L  I  E  F  E  V  I  A  S  A  T  N  N  F  N  E  E  N  K  L  G  E  G  G  F  G  P  V  F  K  :  G  K  </second_frame>
            <third_frame>   K  T  P  I  F  S  T  L  K  T  R  F  V  L  L  F  D  S  P  L  F  H  C  S  Q  Q  N  R  T  Q  L  L  K  I  G  *  W  C  F  V  *  Y  R  W  L  W  E  F  G  E  I  D  *  K  I  N  K  I  S  P  I  Q  A  A  L  P  T  S  G  S  E  L  A  S  F  A  R  K  F  I  V  A  L  L  H  R  P  V  P  V  W  H  L  Y  S  K  L  *  S  D  P  I  L  P  N  P  E  A  I  T  :  D  R  R  E  K  E  P  E  A  S  V  W  V  I  H  A  T  F  Q  K  T  T  Q  W  K  V  Y  G  L  V  I  *  R  K  K  I  Q  L  N  F  H  *  L  N  L  R  *  L  P  Q  Q  Q  T  T  S  M  K  K  T  N  S  G  K  E  V  L  V  Q  F  S  R :   E  S </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02HBa0323A14.3" strand="+"/>
                <serials PGL_serial="3" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="24054" stop="24213"/>
                    <exon start="26703" stop="26914"/>
                    <exon start="27068" stop="27073"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>378</number_coding_nucleotides>
                  <number_encoded_amino_acids>126</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>NIPHSSCTSNKWLRVGKFCQEVYCSPPSPSSSSLAPVLEAIIRSYLTKPRSYNGQKRKGARSFSLGDSCYISKDYTVESLWIGNLKKEDPIELPLIEFEVIASATNNFNEENKLGEGGFGPVFKGK</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="4" PGL_strand="+" PGL_start="28113" PGL_stop="28419"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="28113" e_stop="28419"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.987"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.987">
            <gDNA_exon_boundary e_start="28113" e_stop="28419" e_length="307"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="28113" stop="28419"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E398620" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="4" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>GATCAACTCATTTTCTCCAGAAGAGATACCGCGATGCCTACACGTTGGCCTTCTCTGTGTTCAAGAGCATCCTAGGGACCGTCCTACTATGGCTGACATAATTCTCATGCTCAACAGTGAAATGAAATGCTCAAGTCCTAAACAACCCACATTTAAGTTTGAAACATACTTGGATCTTGATGGATCAGCAAAAGATAACGAAAGATGTTCTGTCAATGAGTTTAGTGCATCGTTGTCTCAAGGACGATAGAACATGCTATTGTACATTCTTAAAAGTTTTTAATCAAGTACAAAAATCAAGTCATTA</gDNA_template>
            <first_frame> D  Q  L  I  F  S  R  R  D  T  A  M  P  T  R  W  P  S  L  C  S  R  A  S  *  G  P  S  Y  Y  G  *  H  N  S  H  A  Q  Q  *  N  E  M  L  K  S  *  T  T  H  I  *  V  *  N  I  L  G  S  *  W  I  S  K  R  *  R  K  M  F  C  Q  *  V  *  C  I  V  V  S  R  T  I  E  H  A  I  V  H  S  *  K  F  L  I  K  Y  K  N  Q  V  I  </first_frame>
            <second_frame>  I  N  S  F  S  P  E  E  I  P  R  C  L  H  V  G  L  L  C  V  Q  E  H  P  R  D  R  P  T  M  A  D  I  I  L  M  L  N  S  E  M  K  C  S  S  P  K  Q  P  T  F  K  F  E  T  Y  L  D  L  D  G  S  A  K  D  N  E  R  C  S  V  N  E  F  S  A  S  L  S  Q  G  R  *  N  M  L  L  Y  I  L  K  S  F  *  S  S  T  K  I  K  S  L </second_frame>
            <third_frame>   S  T  H  F  L  Q  K  R  Y  R  D  A  Y  T  L  A  F  S  V  F  K  S  I  L  G  T  V  L  L  W  L  T  *  F  S  C  S  T  V  K  *  N  A  Q  V  L  N  N  P  H  L  S  L  K  H  T  W  I  L  M  D  Q  Q  K  I  T  K  D  V  L  S  M  S  L  V  H  R  C  L  K  D  D  R  T  C  Y  C  T  F  L  K  V  F  N  Q  V  Q  K  S  S  H   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02HBa0323A14.3" strand="+"/>
                <serials PGL_serial="4" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="28114" stop="28362"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>246</number_coding_nucleotides>
                  <number_encoded_amino_acids>82</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>INSFSPEEIPRCLHVGLLCVQEHPRDRPTMADIILMLNSEMKCSSPKQPTFKFETYLDLDGSAKDNERCSVNEFSASLSQGR*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="5" PGL_strand="+" PGL_start="42663" PGL_stop="42833"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="42663" e_stop="42833"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="42663" e_stop="42833" e_length="171"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="42663" stop="42833"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E278874" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="5" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>ACTTTGTCATTCGACCGGAAAACGATGACAGGGAACAGAGTTACCTATGGCAGAGCTTTGATTATCCAACAAACACTTTATTACCTGGGATGAAACTTGGGTGGGATTCAAAATCCGGGATGAATAGAAACATAACATCATGGAAATCAGCAATTGACCCAGCTCCCGGAG</gDNA_template>
            <first_frame> T  L  S  F  D  R  K  T  M  T  G  N  R  V  T  Y  G  R  A  L  I  I  Q  Q  T  L  Y  Y  L  G  *  N  L  G  G  I  Q  N  P  G  *  I  E  T  *  H  H  G  N  Q  Q  L  T  Q  L  P  E </first_frame>
            <second_frame>  L  C  H  S  T  G  K  R  *  Q  G  T  E  L  P  M  A  E  L  *  L  S  N  K  H  F  I  T  W  D  E  T  W  V  G  F  K  I  R  D  E  *  K  H  N  I  M  E  I  S  N  *  P  S  S  R   </second_frame>
            <third_frame>   F  V  I  R  P  E  N  D  D  R  E  Q  S  Y  L  W  Q  S  F  D  Y  P  T  N  T  L  L  P  G  M  K  L  G  W  D  S  K  S  G  M  N  R  N  I  T  S  W  K  S  A  I  D  P  A  P  G  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <none gDNA_id="C02HBa0323A14.3"/>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="6" PGL_strand="+" PGL_start="46020" PGL_stop="48664"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="46648" e_stop="46760"/>
            <exon e_start="46859" e_stop="47096"/>
            <exon e_start="47183" e_stop="47333"/>
            <exon e_start="47424" e_stop="48046"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.000" acc_prob="0.955" e_score="0.965"/>
          <exon-intron don_prob="0.975" acc_prob="0.994" e_score="0.958"/>
          <exon-intron don_prob="0.961" acc_prob="0.908" e_score="1.000"/>
          <exon-only e_score="0.979"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.965">
            <gDNA_exon_boundary e_start="46648" e_stop="46760" e_length="113"/>
          </exon>
          <intron i_serial="1" don_prob="0.000" acc_prob="0.955">
            <gDNA_intron_boundary i_start="46761" i_stop="46858" i_length="98"/>
          </intron>
          <exon e_serial="2" e_score="0.958">
            <gDNA_exon_boundary e_start="46859" e_stop="47096" e_length="238"/>
          </exon>
          <intron i_serial="2" don_prob="0.975" acc_prob="0.994">
            <gDNA_intron_boundary i_start="47097" i_stop="47182" i_length="86"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="47183" e_stop="47333" e_length="151"/>
          </exon>
          <intron i_serial="3" don_prob="0.961" acc_prob="0.908">
            <gDNA_intron_boundary i_start="47334" i_stop="47423" i_length="90"/>
          </intron>
          <exon e_serial="4" e_score="0.979">
            <gDNA_exon_boundary e_start="47424" e_stop="48046" e_length="623"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="46648" stop="46760"/>
              <exon start="46859" stop="47096"/>
              <exon start="47183" stop="47333"/>
              <exon start="47424" stop="47481"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E233778" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="46926" stop="47096"/>
              <exon start="47183" stop="47333"/>
              <exon start="47424" stop="47770"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E396658" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="46927" stop="47096"/>
              <exon start="47183" stop="47333"/>
              <exon start="47424" stop="47682"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E231230" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="47003" stop="47096"/>
              <exon start="47183" stop="47333"/>
              <exon start="47424" stop="48006"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E711751" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="47615" stop="47942"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E220662" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="47774" stop="48046"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E353554" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="6" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>CAGGCTTCAACACAGAAATCTAGTCCGGCTTCTTGGCTGTTGTGTTGATATGGAAGAGAAGATGCTGATCTATGAATACCTGGAGAATAAAAGTTTAGATTCAATTTTGTTCA : ATAAACAGAAAAGCTCGCTGCTCGACTGGCAAAAGCGGTTCAATATTATTTGTGGGATTGCTCGGGGGCTTCTATACCTTCATCAAGATTCAAGATTTAGGATTATCCATAGAGACCTTAAAGCAAGCAATATTCTGCTTGATAAGGATTTGACCCCCAAAATATCAGATTTTGGCATGGCAAGAATTTTTGGCGGAGATGAGACTGAAGGAAATACCAAAAGAGTAGTTGGAACCTA : TGGTTACATGTCTCCGGAATATGCAATGGATGGCCTCTTCTCTGTTAAGTCCGATGTTTTCAGCTTTGGGGTTTTGGTGTTAGAAATAGTAACCGGAAAGAAGAACAGGGGATTCTATTATCAAAATAACCAACTCAACCTTCTTGGACAT : GCGTGGAGACTCTGGAAAGAAGGGAGCGGCTCAGAGCTACTAGATCCATCTTTTGGAGAATCTTTTTCTCCATCTGAAGTAATGAGATGCATACAGGTTGGACTGTTGTGTGTCCAGGAACAAGCAGAAGACCGACCAAACATGGCCACTGTGGTTTTGATGCTAGGTAGCGAAAGTGCATCACTTCCTCAGCCTAAAAACCCAGGATTTTGCCTTGGAAGAAGACCCGTTGATTCTGATTCATATTCGACTAATTATGAAGAAACTTGCACTGTCAATCAAGTTACAGTTACCATGATAGATCCCCGGTAGTTGATGGTATCGCCCTCAGAAAGTGTGTATATTACTACAAGAGGTTCACAATTTTCTCTTGTATACTATCTCAGTTTTTGTTTTTGGGTAAGTTTTGTGAAAGATAAAGAGCATAATTAGGTCTTTTTTTCTCATTACATACAATTTGTGAATTCAAAATCTTGTCTTTTTTCATCATCAATGTAATAGGCCAATCATTCCTTTTCCATATCCTTCTAAATTACTGTGTCATTATTGATGTGATTCAGAAGGAATATCTTGTGCATTCATCTTCATTTCTACTAAATAAAATTTAAACTTTTGGTCTTTTC</gDNA_template>
            <first_frame> Q  A  S  T  Q  K  S  S  P  A  S  W  L  L  C  *  Y  G  R  E  D  A  D  L  *  I  P  G  E  *  K  F  R  F  N  F  V  Q :   *  T  E  K  L  A  A  R  L  A  K  A  V  Q  Y  Y  L  W  D  C  S  G  A  S  I  P  S  S  R  F  K  I  *  D  Y  P  *  R  P  *  S  K  Q  Y  S  A  *  *  G  F  D  P  Q  N  I  R  F  W  H  G  K  N  F  W  R  R  *  D  *  R  K  Y  Q  K  S  S  W  N  L  :  W  L  H  V  S  G  I  C  N  G  W  P  L  L  C  *  V  R  C  F  Q  L  W  G  F  G  V  R  N  S  N  R  K  E  E  Q  G  I  L  L  S  K  *  P  T  Q  P  S  W  T   : C  V  E  T  L  E  R  R  E  R  L  R  A  T  R  S  I  F  W  R  I  F  F  S  I  *  S  N  E  M  H  T  G  W  T  V  V  C  P  G  T  S  R  R  P  T  K  H  G  H  C  G  F  D  A  R  *  R  K  C  I  T  S  S  A  *  K  P  R  I  L  P  W  K  K  T  R  *  F  *  F  I  F  D  *  L  *  R  N  L  H  C  Q  S  S  Y  S  Y  H  D  R  S  P  V  V  D  G  I  A  L  R  K  C  V  Y  Y  Y  K  R  F  T  I  F  S  C  I  L  S  Q  F  L  F  L  G  K  F  C  E  R  *  R  A  *  L  G  L  F  F  S  L  H  T  I  C  E  F  K  I  L  S  F  F  I  I  N  V  I  G  Q  S  F  L  F  H  I  L  L  N  Y  C  V  I  I  D  V  I  Q  K  E  Y  L  V  H  S  S  S  F  L  L  N  K  I  *  T  F  G  L  F </first_frame>
            <second_frame>  R  L  Q  H  R  N  L  V  R  L  L  G  C  C  V  D  M  E  E  K  M  L  I  Y  E  Y  L  E  N  K  S  L  D  S  I  L  F   : N  K  Q  K  S  S  L  L  D  W  Q  K  R  F  N  I  I  C  G  I  A  R  G  L  L  Y  L  H  Q  D  S  R  F  R  I  I  H  R  D  L  K  A  S  N  I  L  L  D  K  D  L  T  P  K  I  S  D  F  G  M  A  R  I  F  G  G  D  E  T  E  G  N  T  K  R  V  V  G  T  Y :   G  Y  M  S  P  E  Y  A  M  D  G  L  F  S  V  K  S  D  V  F  S  F  G  V  L  V  L  E  I  V  T  G  K  K  N  R  G  F  Y  Y  Q  N  N  Q  L  N  L  L  G  H  :  A  W  R  L  W  K  E  G  S  G  S  E  L  L  D  P  S  F  G  E  S  F  S  P  S  E  V  M  R  C  I  Q  V  G  L  L  C  V  Q  E  Q  A  E  D  R  P  N  M  A  T  V  V  L  M  L  G  S  E  S  A  S  L  P  Q  P  K  N  P  G  F  C  L  G  R  R  P  V  D  S  D  S  Y  S  T  N  Y  E  E  T  C  T  V  N  Q  V  T  V  T  M  I  D  P  R  *  L  M  V  S  P  S  E  S  V  Y  I  T  T  R  G  S  Q  F  S  L  V  Y  Y  L  S  F  C  F  W  V  S  F  V  K  D  K  E  H  N  *  V  F  F  S  H  Y  I  Q  F  V  N  S  K  S  C  L  F  S  S  S  M  *  *  A  N  H  S  F  S  I  S  F  *  I  T  V  S  L  L  M  *  F  R  R  N  I  L  C  I  H  L  H  F  Y  *  I  K  F  K  L  L  V  F   </second_frame>
            <third_frame>   G  F  N  T  E  I  *  S  G  F  L  A  V  V  L  I  W  K  R  R  C  *  S  M  N  T  W  R  I  K  V  *  I  Q  F  C  S  :  I  N  R  K  A  R  C  S  T  G  K  S  G  S  I  L  F  V  G  L  L  G  G  F  Y  T  F  I  K  I  Q  D  L  G  L  S  I  E  T  L  K  Q  A  I  F  C  L  I  R  I  *  P  P  K  Y  Q  I  L  A  W  Q  E  F  L  A  E  M  R  L  K  E  I  P  K  E  *  L  E  P   : M  V  T  C  L  R  N  M  Q  W  M  A  S  S  L  L  S  P  M  F  S  A  L  G  F  W  C  *  K  *  *  P  E  R  R  T  G  D  S  I  I  K  I  T  N  S  T  F  L  D  M :   R  G  D  S  G  K  K  G  A  A  Q  S  Y  *  I  H  L  L  E  N  L  F  L  H  L  K  *  *  D  A  Y  R  L  D  C  C  V  S  R  N  K  Q  K  T  D  Q  T  W  P  L  W  F  *  C  *  V  A  K  V  H  H  F  L  S  L  K  T  Q  D  F  A  L  E  E  D  P  L  I  L  I  H  I  R  L  I  M  K  K  L  A  L  S  I  K  L  Q  L  P  *  *  I  P  G  S  *  W  Y  R  P  Q  K  V  C  I  L  L  Q  E  V  H  N  F  L  L  Y  T  I  S  V  F  V  F  G  *  V  L  *  K  I  K  S  I  I  R  S  F  F  L  I  T  Y  N  L  *  I  Q  N  L  V  F  F  H  H  Q  C  N  R  P  I  I  P  F  P  Y  P  S  K  L  L  C  H  Y  *  C  D  S  E  G  I  S  C  A  F  I  F  I  S  T  K  *  N  L  N  F  W  S  F  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02HBa0323A14.3" strand="+"/>
                <serials PGL_serial="6" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="46649" stop="46760"/>
                    <exon start="46859" stop="47096"/>
                    <exon start="47183" stop="47333"/>
                    <exon start="47424" stop="47735"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>810</number_coding_nucleotides>
                  <number_encoded_amino_acids>270</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>RLQHRNLVRLLGCCVDMEEKMLIYEYLENKSLDSILFNKQKSSLLDWQKRFNIICGIARGLLYLHQDSRFRIIHRDLKASNILLDKDLTPKISDFGMARIFGGDETEGNTKRVVGTYGYMSPEYAMDGLFSVKSDVFSFGVLVLEIVTGKKNRGFYYQNNQLNLLGHAWRLWKEGSGSELLDPSFGESFSPSEVMRCIQVGLLCVQEQAEDRPNMATVVLMLGSESASLPQPKNPGFCLGRRPVDSDSYSTNYEETCTVNQVTVTMIDPR*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="2">
          <exon_coordinates>
            <exon e_start="46020" e_stop="46188"/>
            <exon e_start="46277" e_stop="46453"/>
            <exon e_start="46686" e_stop="46760"/>
            <exon e_start="46859" e_stop="47096"/>
            <exon e_start="47183" e_stop="47333"/>
            <exon e_start="47424" e_stop="48046"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.998" acc_prob="0.694" e_score="0.988"/>
          <exon-intron don_prob="0.434" acc_prob="0.000" e_score="0.977"/>
          <exon-intron don_prob="0.000" acc_prob="0.955" e_score="0.987"/>
          <exon-intron don_prob="0.975" acc_prob="0.994" e_score="1.000"/>
          <exon-intron don_prob="0.961" acc_prob="0.908" e_score="1.000"/>
          <exon-only e_score="0.979"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.988">
            <gDNA_exon_boundary e_start="46020" e_stop="46188" e_length="169"/>
          </exon>
          <intron i_serial="1" don_prob="0.998" acc_prob="0.694">
            <gDNA_intron_boundary i_start="46189" i_stop="46276" i_length="88"/>
          </intron>
          <exon e_serial="2" e_score="0.977">
            <gDNA_exon_boundary e_start="46277" e_stop="46453" e_length="177"/>
          </exon>
          <intron i_serial="2" don_prob="0.434" acc_prob="0.000">
            <gDNA_intron_boundary i_start="46454" i_stop="46685" i_length="232"/>
          </intron>
          <exon e_serial="3" e_score="0.987">
            <gDNA_exon_boundary e_start="46686" e_stop="46760" e_length="75"/>
          </exon>
          <intron i_serial="3" don_prob="0.000" acc_prob="0.955">
            <gDNA_intron_boundary i_start="46761" i_stop="46858" i_length="98"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="46859" e_stop="47096" e_length="238"/>
          </exon>
          <intron i_serial="4" don_prob="0.975" acc_prob="0.994">
            <gDNA_intron_boundary i_start="47097" i_stop="47182" i_length="86"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="47183" e_stop="47333" e_length="151"/>
          </exon>
          <intron i_serial="5" don_prob="0.961" acc_prob="0.908">
            <gDNA_intron_boundary i_start="47334" i_stop="47423" i_length="90"/>
          </intron>
          <exon e_serial="6" e_score="0.979">
            <gDNA_exon_boundary e_start="47424" e_stop="48046" e_length="623"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="46020" stop="46188"/>
              <exon start="46277" stop="46453"/>
              <exon start="46686" stop="46760"/>
              <exon start="46859" stop="46954"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E310509" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="46926" stop="47096"/>
              <exon start="47183" stop="47333"/>
              <exon start="47424" stop="47770"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E396658" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="46927" stop="47096"/>
              <exon start="47183" stop="47333"/>
              <exon start="47424" stop="47682"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E231230" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="47003" stop="47096"/>
              <exon start="47183" stop="47333"/>
              <exon start="47424" stop="48006"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E711751" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="47615" stop="47942"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E220662" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="47774" stop="48046"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E353554" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="6" AGS_serial="2" gDNA_strand="+"/>
          <translation>
            <gDNA_template>CAAATTGGAGGTGAAGGATCTGGAAATAGTTCTCGCAAGACAAAAATAGTTGCAATAGCTGCTGGGGTTACAGTTGGTATAGCTCTTGTGTTATTTGGACTAACCCTTTGCATCTTATCAAAGAGAAGAAAACATCAAAGTTCAATCCGAACTAAATCCGTGAACAGAG : GCACTAGCGAACGAAGTCAAGAGCTTTTGATGAATGCAACTATTATTCCAAGTAAAAGAGAATTTTCTGGTGAAACTTCCACGGAAGAGTTTGAATTGCCATTGTTTGATTACAGTACCCTAGCTACGGCAACAGAAAATTTTTCTGACGCGACTAAGTTGGGCCAAGGTGGCTTTG : GTTGTGTTGATATGGAAGAGAAGATGCTGATCTATGAATACCTGGAGAATAAAAGTTTAGATTCAATTTTGTTCA : ATAAACAGAAAAGCTCGCTGCTCGACTGGCAAAAGCGGTTCAATATTATTTGTGGGATTGCTCGGGGGCTTCTATACCTTCATCAAGATTCAAGATTTAGGATTATCCATAGAGACCTTAAAGCAAGCAATATTCTGCTTGATAAGGATTTGACCCCCAAAATATCAGATTTTGGCATGGCAAGAATTTTTGGCGGAGATGAGACTGAAGGAAATACCAAAAGAGTAGTTGGAACCTA : TGGTTACATGTCTCCGGAATATGCAATGGATGGCCTCTTCTCTGTTAAGTCCGATGTTTTCAGCTTTGGGGTTTTGGTGTTAGAAATAGTAACCGGAAAGAAGAACAGGGGATTCTATTATCAAAATAACCAACTCAACCTTCTTGGACAT : GCGTGGAGACTCTGGAAAGAAGGGAGCGGCTCAGAGCTACTAGATCCATCTTTTGGAGAATCTTTTTCTCCATCTGAAGTAATGAGATGCATACAGGTTGGACTGTTGTGTGTCCAGGAACAAGCAGAAGACCGACCAAACATGGCCACTGTGGTTTTGATGCTAGGTAGCGAAAGTGCATCACTTCCTCAGCCTAAAAACCCAGGATTTTGCCTTGGAAGAAGACCCGTTGATTCTGATTCATATTCGACTAATTATGAAGAAACTTGCACTGTCAATCAAGTTACAGTTACCATGATAGATCCCCGGTAGTTGATGGTATCGCCCTCAGAAAGTGTGTATATTACTACAAGAGGTTCACAATTTTCTCTTGTATACTATCTCAGTTTTTGTTTTTGGGTAAGTTTTGTGAAAGATAAAGAGCATAATTAGGTCTTTTTTTCTCATTACATACAATTTGTGAATTCAAAATCTTGTCTTTTTTCATCATCAATGTAATAGGCCAATCATTCCTTTTCCATATCCTTCTAAATTACTGTGTCATTATTGATGTGATTCAGAAGGAATATCTTGTGCATTCATCTTCATTTCTACTAAATAAAATTTAAACTTTTGGTCTTTTC</gDNA_template>
            <first_frame> Q  I  G  G  E  G  S  G  N  S  S  R  K  T  K  I  V  A  I  A  A  G  V  T  V  G  I  A  L  V  L  F  G  L  T  L  C  I  L  S  K  R  R  K  H  Q  S  S  I  R  T  K  S  V  N  R   : G  T  S  E  R  S  Q  E  L  L  M  N  A  T  I  I  P  S  K  R  E  F  S  G  E  T  S  T  E  E  F  E  L  P  L  F  D  Y  S  T  L  A  T  A  T  E  N  F  S  D  A  T  K  L  G  Q  G  G  F   : G  C  V  D  M  E  E  K  M  L  I  Y  E  Y  L  E  N  K  S  L  D  S  I  L  F   : N  K  Q  K  S  S  L  L  D  W  Q  K  R  F  N  I  I  C  G  I  A  R  G  L  L  Y  L  H  Q  D  S  R  F  R  I  I  H  R  D  L  K  A  S  N  I  L  L  D  K  D  L  T  P  K  I  S  D  F  G  M  A  R  I  F  G  G  D  E  T  E  G  N  T  K  R  V  V  G  T  Y :   G  Y  M  S  P  E  Y  A  M  D  G  L  F  S  V  K  S  D  V  F  S  F  G  V  L  V  L  E  I  V  T  G  K  K  N  R  G  F  Y  Y  Q  N  N  Q  L  N  L  L  G  H  :  A  W  R  L  W  K  E  G  S  G  S  E  L  L  D  P  S  F  G  E  S  F  S  P  S  E  V  M  R  C  I  Q  V  G  L  L  C  V  Q  E  Q  A  E  D  R  P  N  M  A  T  V  V  L  M  L  G  S  E  S  A  S  L  P  Q  P  K  N  P  G  F  C  L  G  R  R  P  V  D  S  D  S  Y  S  T  N  Y  E  E  T  C  T  V  N  Q  V  T  V  T  M  I  D  P  R  *  L  M  V  S  P  S  E  S  V  Y  I  T  T  R  G  S  Q  F  S  L  V  Y  Y  L  S  F  C  F  W  V  S  F  V  K  D  K  E  H  N  *  V  F  F  S  H  Y  I  Q  F  V  N  S  K  S  C  L  F  S  S  S  M  *  *  A  N  H  S  F  S  I  S  F  *  I  T  V  S  L  L  M  *  F  R  R  N  I  L  C  I  H  L  H  F  Y  *  I  K  F  K  L  L  V  F   </first_frame>
            <second_frame>  K  L  E  V  K  D  L  E  I  V  L  A  R  Q  K  *  L  Q  *  L  L  G  L  Q  L  V  *  L  L  C  Y  L  D  *  P  F  A  S  Y  Q  R  E  E  N  I  K  V  Q  S  E  L  N  P  *  T  E  :  A  L  A  N  E  V  K  S  F  *  *  M  Q  L  L  F  Q  V  K  E  N  F  L  V  K  L  P  R  K  S  L  N  C  H  C  L  I  T  V  P  *  L  R  Q  Q  K  I  F  L  T  R  L  S  W  A  K  V  A  L  :  V  V  L  I  W  K  R  R  C  *  S  M  N  T  W  R  I  K  V  *  I  Q  F  C  S  :  I  N  R  K  A  R  C  S  T  G  K  S  G  S  I  L  F  V  G  L  L  G  G  F  Y  T  F  I  K  I  Q  D  L  G  L  S  I  E  T  L  K  Q  A  I  F  C  L  I  R  I  *  P  P  K  Y  Q  I  L  A  W  Q  E  F  L  A  E  M  R  L  K  E  I  P  K  E  *  L  E  P   : M  V  T  C  L  R  N  M  Q  W  M  A  S  S  L  L  S  P  M  F  S  A  L  G  F  W  C  *  K  *  *  P  E  R  R  T  G  D  S  I  I  K  I  T  N  S  T  F  L  D  M :   R  G  D  S  G  K  K  G  A  A  Q  S  Y  *  I  H  L  L  E  N  L  F  L  H  L  K  *  *  D  A  Y  R  L  D  C  C  V  S  R  N  K  Q  K  T  D  Q  T  W  P  L  W  F  *  C  *  V  A  K  V  H  H  F  L  S  L  K  T  Q  D  F  A  L  E  E  D  P  L  I  L  I  H  I  R  L  I  M  K  K  L  A  L  S  I  K  L  Q  L  P  *  *  I  P  G  S  *  W  Y  R  P  Q  K  V  C  I  L  L  Q  E  V  H  N  F  L  L  Y  T  I  S  V  F  V  F  G  *  V  L  *  K  I  K  S  I  I  R  S  F  F  L  I  T  Y  N  L  *  I  Q  N  L  V  F  F  H  H  Q  C  N  R  P  I  I  P  F  P  Y  P  S  K  L  L  C  H  Y  *  C  D  S  E  G  I  S  C  A  F  I  F  I  S  T  K  *  N  L  N  F  W  S  F  </second_frame>
            <third_frame>   N  W  R  *  R  I  W  K  *  F  S  Q  D  K  N  S  C  N  S  C  W  G  Y  S  W  Y  S  S  C  V  I  W  T  N  P  L  H  L  I  K  E  K  K  T  S  K  F  N  P  N  *  I  R  E  Q  R :   H  *  R  T  K  S  R  A  F  D  E  C  N  Y  Y  S  K  *  K  R  I  F  W  *  N  F  H  G  R  V  *  I  A  I  V  *  L  Q  Y  P  S  Y  G  N  R  K  F  F  *  R  D  *  V  G  P  R  W  L  W :   L  C  *  Y  G  R  E  D  A  D  L  *  I  P  G  E  *  K  F  R  F  N  F  V  Q :   *  T  E  K  L  A  A  R  L  A  K  A  V  Q  Y  Y  L  W  D  C  S  G  A  S  I  P  S  S  R  F  K  I  *  D  Y  P  *  R  P  *  S  K  Q  Y  S  A  *  *  G  F  D  P  Q  N  I  R  F  W  H  G  K  N  F  W  R  R  *  D  *  R  K  Y  Q  K  S  S  W  N  L  :  W  L  H  V  S  G  I  C  N  G  W  P  L  L  C  *  V  R  C  F  Q  L  W  G  F  G  V  R  N  S  N  R  K  E  E  Q  G  I  L  L  S  K  *  P  T  Q  P  S  W  T   : C  V  E  T  L  E  R  R  E  R  L  R  A  T  R  S  I  F  W  R  I  F  F  S  I  *  S  N  E  M  H  T  G  W  T  V  V  C  P  G  T  S  R  R  P  T  K  H  G  H  C  G  F  D  A  R  *  R  K  C  I  T  S  S  A  *  K  P  R  I  L  P  W  K  K  T  R  *  F  *  F  I  F  D  *  L  *  R  N  L  H  C  Q  S  S  Y  S  Y  H  D  R  S  P  V  V  D  G  I  A  L  R  K  C  V  Y  Y  Y  K  R  F  T  I  F  S  C  I  L  S  Q  F  L  F  L  G  K  F  C  E  R  *  R  A  *  L  G  L  F  F  S  L  H  T  I  C  E  F  K  I  L  S  F  F  I  I  N  V  I  G  Q  S  F  L  F  H  I  L  L  N  Y  C  V  I  I  D  V  I  Q  K  E  Y  L  V  H  S  S  S  F  L  L  N  K  I  *  T  F  G  L  F </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02HBa0323A14.3" strand="+"/>
                <serials PGL_serial="6" AGS_serial="2" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="46020" stop="46188"/>
                    <exon start="46277" stop="46453"/>
                    <exon start="46686" stop="46760"/>
                    <exon start="46859" stop="47096"/>
                    <exon start="47183" stop="47333"/>
                    <exon start="47424" stop="47735"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>1119</number_coding_nucleotides>
                  <number_encoded_amino_acids>373</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>QIGGEGSGNSSRKTKIVAIAAGVTVGIALVLFGLTLCILSKRRKHQSSIRTKSVNRGTSERSQELLMNATIIPSKREFSGETSTEEFELPLFDYSTLATATENFSDATKLGQGGFGCVDMEEKMLIYEYLENKSLDSILFNKQKSSLLDWQKRFNIICGIARGLLYLHQDSRFRIIHRDLKASNILLDKDLTPKISDFGMARIFGGDETEGNTKRVVGTYGYMSPEYAMDGLFSVKSDVFSFGVLVLEIVTGKKNRGFYYQNNQLNLLGHAWRLWKEGSGSELLDPSFGESFSPSEVMRCIQVGLLCVQEQAEDRPNMATVVLMLGSESASLPQPKNPGFCLGRRPVDSDSYSTNYEETCTVNQVTVTMIDPR*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="3">
          <exon_coordinates>
            <exon e_start="46648" e_stop="46760"/>
            <exon e_start="46859" e_stop="47096"/>
            <exon e_start="47183" e_stop="47333"/>
            <exon e_start="47424" e_stop="47954"/>
            <exon e_start="48455" e_stop="48471"/>
            <exon e_start="48647" e_stop="48664"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.000" acc_prob="0.955" e_score="0.965"/>
          <exon-intron don_prob="0.975" acc_prob="0.994" e_score="0.958"/>
          <exon-intron don_prob="0.961" acc_prob="0.908" e_score="1.000"/>
          <exon-intron don_prob="0.000" acc_prob="0.000" e_score="0.951"/>
          <exon-intron don_prob="0.468" acc_prob="0.921" e_score="0.765"/>
          <exon-only e_score="0.778"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.965">
            <gDNA_exon_boundary e_start="46648" e_stop="46760" e_length="113"/>
          </exon>
          <intron i_serial="1" don_prob="0.000" acc_prob="0.955">
            <gDNA_intron_boundary i_start="46761" i_stop="46858" i_length="98"/>
          </intron>
          <exon e_serial="2" e_score="0.958">
            <gDNA_exon_boundary e_start="46859" e_stop="47096" e_length="238"/>
          </exon>
          <intron i_serial="2" don_prob="0.975" acc_prob="0.994">
            <gDNA_intron_boundary i_start="47097" i_stop="47182" i_length="86"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="47183" e_stop="47333" e_length="151"/>
          </exon>
          <intron i_serial="3" don_prob="0.961" acc_prob="0.908">
            <gDNA_intron_boundary i_start="47334" i_stop="47423" i_length="90"/>
          </intron>
          <exon e_serial="4" e_score="0.951">
            <gDNA_exon_boundary e_start="47424" e_stop="47954" e_length="531"/>
          </exon>
          <intron i_serial="4" don_prob="0.000" acc_prob="0.000">
            <gDNA_intron_boundary i_start="47955" i_stop="48454" i_length="500"/>
          </intron>
          <exon e_serial="5" e_score="0.765">
            <gDNA_exon_boundary e_start="48455" e_stop="48471" e_length="17"/>
          </exon>
          <intron i_serial="5" don_prob="0.468" acc_prob="0.921">
            <gDNA_intron_boundary i_start="48472" i_stop="48646" i_length="175"/>
          </intron>
          <exon e_serial="6" e_score="0.778">
            <gDNA_exon_boundary e_start="48647" e_stop="48664" e_length="18"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="46648" stop="46760"/>
              <exon start="46859" stop="47096"/>
              <exon start="47183" stop="47333"/>
              <exon start="47424" stop="47481"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E233778" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="46926" stop="47096"/>
              <exon start="47183" stop="47333"/>
              <exon start="47424" stop="47770"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E396658" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="46927" stop="47096"/>
              <exon start="47183" stop="47333"/>
              <exon start="47424" stop="47682"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E231230" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="47219" stop="47333"/>
              <exon start="47424" stop="47954"/>
              <exon start="48455" stop="48471"/>
              <exon start="48647" stop="48664"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E396806" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="47615" stop="47942"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E220662" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="6" AGS_serial="3" gDNA_strand="+"/>
          <translation>
            <gDNA_template>CAGGCTTCAACACAGAAATCTAGTCCGGCTTCTTGGCTGTTGTGTTGATATGGAAGAGAAGATGCTGATCTATGAATACCTGGAGAATAAAAGTTTAGATTCAATTTTGTTCA : ATAAACAGAAAAGCTCGCTGCTCGACTGGCAAAAGCGGTTCAATATTATTTGTGGGATTGCTCGGGGGCTTCTATACCTTCATCAAGATTCAAGATTTAGGATTATCCATAGAGACCTTAAAGCAAGCAATATTCTGCTTGATAAGGATTTGACCCCCAAAATATCAGATTTTGGCATGGCAAGAATTTTTGGCGGAGATGAGACTGAAGGAAATACCAAAAGAGTAGTTGGAACCTA : TGGTTACATGTCTCCGGAATATGCAATGGATGGCCTCTTCTCTGTTAAGTCCGATGTTTTCAGCTTTGGGGTTTTGGTGTTAGAAATAGTAACCGGAAAGAAGAACAGGGGATTCTATTATCAAAATAACCAACTCAACCTTCTTGGACAT : GCGTGGAGACTCTGGAAAGAAGGGAGCGGCTCAGAGCTACTAGATCCATCTTTTGGAGAATCTTTTTCTCCATCTGAAGTAATGAGATGCATACAGGTTGGACTGTTGTGTGTCCAGGAACAAGCAGAAGACCGACCAAACATGGCCACTGTGGTTTTGATGCTAGGTAGCGAAAGTGCATCACTTCCTCAGCCTAAAAACCCAGGATTTTGCCTTGGAAGAAGACCCGTTGATTCTGATTCATATTCGACTAATTATGAAGAAACTTGCACTGTCAATCAAGTTACAGTTACCATGATAGATCCCCGGTAGTTGATGGTATCGCCCTCAGAAAGTGTGTATATTACTACAAGAGGTTCACAATTTTCTCTTGTATACTATCTCAGTTTTTGTTTTTGGGTAAGTTTTGTGAAAGATAAAGAGCATAATTAGGTCTTTTTTTCTCATTACATACAATTTGTGAATTCAAAATCTTGTCTTTTTTCATCATCAATGTAATAGGCCAATCATTCCTTTTCCATATCCTTCTAA : AACAGAATAAAGAAAAA : TAACAAAATAAAAGAAAA</gDNA_template>
            <first_frame> Q  A  S  T  Q  K  S  S  P  A  S  W  L  L  C  *  Y  G  R  E  D  A  D  L  *  I  P  G  E  *  K  F  R  F  N  F  V  Q :   *  T  E  K  L  A  A  R  L  A  K  A  V  Q  Y  Y  L  W  D  C  S  G  A  S  I  P  S  S  R  F  K  I  *  D  Y  P  *  R  P  *  S  K  Q  Y  S  A  *  *  G  F  D  P  Q  N  I  R  F  W  H  G  K  N  F  W  R  R  *  D  *  R  K  Y  Q  K  S  S  W  N  L  :  W  L  H  V  S  G  I  C  N  G  W  P  L  L  C  *  V  R  C  F  Q  L  W  G  F  G  V  R  N  S  N  R  K  E  E  Q  G  I  L  L  S  K  *  P  T  Q  P  S  W  T   : C  V  E  T  L  E  R  R  E  R  L  R  A  T  R  S  I  F  W  R  I  F  F  S  I  *  S  N  E  M  H  T  G  W  T  V  V  C  P  G  T  S  R  R  P  T  K  H  G  H  C  G  F  D  A  R  *  R  K  C  I  T  S  S  A  *  K  P  R  I  L  P  W  K  K  T  R  *  F  *  F  I  F  D  *  L  *  R  N  L  H  C  Q  S  S  Y  S  Y  H  D  R  S  P  V  V  D  G  I  A  L  R  K  C  V  Y  Y  Y  K  R  F  T  I  F  S  C  I  L  S  Q  F  L  F  L  G  K  F  C  E  R  *  R  A  *  L  G  L  F  F  S  L  H  T  I  C  E  F  K  I  L  S  F  F  I  I  N  V  I  G  Q  S  F  L  F  H  I  L  L   : K  Q  N  K  E  K  :  *  Q  N  K  R  K </first_frame>
            <second_frame>  R  L  Q  H  R  N  L  V  R  L  L  G  C  C  V  D  M  E  E  K  M  L  I  Y  E  Y  L  E  N  K  S  L  D  S  I  L  F   : N  K  Q  K  S  S  L  L  D  W  Q  K  R  F  N  I  I  C  G  I  A  R  G  L  L  Y  L  H  Q  D  S  R  F  R  I  I  H  R  D  L  K  A  S  N  I  L  L  D  K  D  L  T  P  K  I  S  D  F  G  M  A  R  I  F  G  G  D  E  T  E  G  N  T  K  R  V  V  G  T  Y :   G  Y  M  S  P  E  Y  A  M  D  G  L  F  S  V  K  S  D  V  F  S  F  G  V  L  V  L  E  I  V  T  G  K  K  N  R  G  F  Y  Y  Q  N  N  Q  L  N  L  L  G  H  :  A  W  R  L  W  K  E  G  S  G  S  E  L  L  D  P  S  F  G  E  S  F  S  P  S  E  V  M  R  C  I  Q  V  G  L  L  C  V  Q  E  Q  A  E  D  R  P  N  M  A  T  V  V  L  M  L  G  S  E  S  A  S  L  P  Q  P  K  N  P  G  F  C  L  G  R  R  P  V  D  S  D  S  Y  S  T  N  Y  E  E  T  C  T  V  N  Q  V  T  V  T  M  I  D  P  R  *  L  M  V  S  P  S  E  S  V  Y  I  T  T  R  G  S  Q  F  S  L  V  Y  Y  L  S  F  C  F  W  V  S  F  V  K  D  K  E  H  N  *  V  F  F  S  H  Y  I  Q  F  V  N  S  K  S  C  L  F  S  S  S  M  *  *  A  N  H  S  F  S  I  S  F  *  :  N  R  I  K  K  N :   N  K  I  K  E   </second_frame>
            <third_frame>   G  F  N  T  E  I  *  S  G  F  L  A  V  V  L  I  W  K  R  R  C  *  S  M  N  T  W  R  I  K  V  *  I  Q  F  C  S  :  I  N  R  K  A  R  C  S  T  G  K  S  G  S  I  L  F  V  G  L  L  G  G  F  Y  T  F  I  K  I  Q  D  L  G  L  S  I  E  T  L  K  Q  A  I  F  C  L  I  R  I  *  P  P  K  Y  Q  I  L  A  W  Q  E  F  L  A  E  M  R  L  K  E  I  P  K  E  *  L  E  P   : M  V  T  C  L  R  N  M  Q  W  M  A  S  S  L  L  S  P  M  F  S  A  L  G  F  W  C  *  K  *  *  P  E  R  R  T  G  D  S  I  I  K  I  T  N  S  T  F  L  D  M :   R  G  D  S  G  K  K  G  A  A  Q  S  Y  *  I  H  L  L  E  N  L  F  L  H  L  K  *  *  D  A  Y  R  L  D  C  C  V  S  R  N  K  Q  K  T  D  Q  T  W  P  L  W  F  *  C  *  V  A  K  V  H  H  F  L  S  L  K  T  Q  D  F  A  L  E  E  D  P  L  I  L  I  H  I  R  L  I  M  K  K  L  A  L  S  I  K  L  Q  L  P  *  *  I  P  G  S  *  W  Y  R  P  Q  K  V  C  I  L  L  Q  E  V  H  N  F  L  L  Y  T  I  S  V  F  V  F  G  *  V  L  *  K  I  K  S  I  I  R  S  F  F  L  I  T  Y  N  L  *  I  Q  N  L  V  F  F  H  H  Q  C  N  R  P  I  I  P  F  P  Y  P  S  K :   T  E  *  R  K   : I  T  K  *  K  K  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02HBa0323A14.3" strand="+"/>
                <serials PGL_serial="6" AGS_serial="3" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="46649" stop="46760"/>
                    <exon start="46859" stop="47096"/>
                    <exon start="47183" stop="47333"/>
                    <exon start="47424" stop="47735"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>810</number_coding_nucleotides>
                  <number_encoded_amino_acids>270</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>RLQHRNLVRLLGCCVDMEEKMLIYEYLENKSLDSILFNKQKSSLLDWQKRFNIICGIARGLLYLHQDSRFRIIHRDLKASNILLDKDLTPKISDFGMARIFGGDETEGNTKRVVGTYGYMSPEYAMDGLFSVKSDVFSFGVLVLEIVTGKKNRGFYYQNNQLNLLGHAWRLWKEGSGSELLDPSFGESFSPSEVMRCIQVGLLCVQEQAEDRPNMATVVLMLGSESASLPQPKNPGFCLGRRPVDSDSYSTNYEETCTVNQVTVTMIDPR*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="7" PGL_strand="+" PGL_start="51338" PGL_stop="52340"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="51338" e_stop="52340"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.908"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.908">
            <gDNA_exon_boundary e_start="51338" e_stop="52340" e_length="1003"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="51338" stop="51782"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E245054" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="51627" stop="52340"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E379648" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="7" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>GGATTCAAAGAGAAATTAGGTGAGGGAGGTTATGGCAGTGTATACAAAGGAAAGCTTCAAAGTGGAAGGGATGTGGCAGTGAAGATGTTAAGCAAGCCTAAATCTGGTGGGCAAGATTTTATGAATGAAGTAGCTAGCATTGGAAGGATTCATCATGTCAATGTGGTTGGACTCGTGGGATATTGTGTTGAGGGAACTAAGCGTGCTCTTGTATACGACTTCATGCCCAATGGATCACTCGACAAGTATATTAGCATCAGTGAAGAAGGAAGTCCTCTGTTAAGTTGGCAGAGGAAGTATGACATTATTCTTGGAGTGGCTCGAGGAACTGGATATTTGCATCGAGGCTGTGATGTACAAATTTTGCATTTTGACATCAAACCACACAACATTCTTTTGGATGAGAATTTCATTCCAAAGATTTCTGACTTTGGGCTTGCAAAATTATATCCACCAGGTAATAGCATAGTGACTCTCACAGCTGCTCGAGGAACGATTGGCTATGTAGCTCCAGAGTTGATCAGCAGAAGCATCGGGGAAATCTCTTACAAAGCTGATGTTTACAGCTTTGGAATGCTGCTCATGGAAATGCTCGACTTGAAAAGACCTGAAGTTGCAAATGAAGAGAATTCCAGCCAATATTTTCCTTATTATATTTACGATAAGTTCAACAAGGGGAAGGAGATTGTGGTGGATGAAGAAGCAAATGATGATGAAAAGAAGATGGCTAGAAAGCTCGCTTTAGTTGCGTTATGGTGCATACAAACAAATCCGATACAACGCCCTTCGATGAGTAGAGTATTAGAAATGCTTGAAGGTGAAGTTGAAGTGCTAGAAGTACCTCCTCAGCCTCTTCAATCTCAACCGATTGTTCATCAGATCATGGGAAGTTCTATGACATTTTCTTCTGATTCAATGGCTTTGTTAGAAAATACGGCTGATAATCTCGTTGAAGTAGACATTTCTTCTGATTGACCATAGTTGATGTAATATTTATGTGAAA</gDNA_template>
            <first_frame> G  F  K  E  K  L  G  E  G  G  Y  G  S  V  Y  K  G  K  L  Q  S  G  R  D  V  A  V  K  M  L  S  K  P  K  S  G  G  Q  D  F  M  N  E  V  A  S  I  G  R  I  H  H  V  N  V  V  G  L  V  G  Y  C  V  E  G  T  K  R  A  L  V  Y  D  F  M  P  N  G  S  L  D  K  Y  I  S  I  S  E  E  G  S  P  L  L  S  W  Q  R  K  Y  D  I  I  L  G  V  A  R  G  T  G  Y  L  H  R  G  C  D  V  Q  I  L  H  F  D  I  K  P  H  N  I  L  L  D  E  N  F  I  P  K  I  S  D  F  G  L  A  K  L  Y  P  P  G  N  S  I  V  T  L  T  A  A  R  G  T  I  G  Y  V  A  P  E  L  I  S  R  S  I  G  E  I  S  Y  K  A  D  V  Y  S  F  G  M  L  L  M  E  M  L  D  L  K  R  P  E  V  A  N  E  E  N  S  S  Q  Y  F  P  Y  Y  I  Y  D  K  F  N  K  G  K  E  I  V  V  D  E  E  A  N  D  D  E  K  K  M  A  R  K  L  A  L  V  A  L  W  C  I  Q  T  N  P  I  Q  R  P  S  M  S  R  V  L  E  M  L  E  G  E  V  E  V  L  E  V  P  P  Q  P  L  Q  S  Q  P  I  V  H  Q  I  M  G  S  S  M  T  F  S  S  D  S  M  A  L  L  E  N  T  A  D  N  L  V  E  V  D  I  S  S  D  *  P  *  L  M  *  Y  L  C  E  </first_frame>
            <second_frame>  D  S  K  R  N  *  V  R  E  V  M  A  V  Y  T  K  E  S  F  K  V  E  G  M  W  Q  *  R  C  *  A  S  L  N  L  V  G  K  I  L  *  M  K  *  L  A  L  E  G  F  I  M  S  M  W  L  D  S  W  D  I  V  L  R  E  L  S  V  L  L  Y  T  T  S  C  P  M  D  H  S  T  S  I  L  A  S  V  K  K  E  V  L  C  *  V  G  R  G  S  M  T  L  F  L  E  W  L  E  E  L  D  I  C  I  E  A  V  M  Y  K  F  C  I  L  T  S  N  H  T  T  F  F  W  M  R  I  S  F  Q  R  F  L  T  L  G  L  Q  N  Y  I  H  Q  V  I  A  *  *  L  S  Q  L  L  E  E  R  L  A  M  *  L  Q  S  *  S  A  E  A  S  G  K  S  L  T  K  L  M  F  T  A  L  E  C  C  S  W  K  C  S  T  *  K  D  L  K  L  Q  M  K  R  I  P  A  N  I  F  L  I  I  F  T  I  S  S  T  R  G  R  R  L  W  W  M  K  K  Q  M  M  M  K  R  R  W  L  E  S  S  L  *  L  R  Y  G  A  Y  K  Q  I  R  Y  N  A  L  R  *  V  E  Y  *  K  C  L  K  V  K  L  K  C  *  K  Y  L  L  S  L  F  N  L  N  R  L  F  I  R  S  W  E  V  L  *  H  F  L  L  I  Q  W  L  C  *  K  I  R  L  I  I  S  L  K  *  T  F  L  L  I  D  H  S  *  C  N  I  Y  V  K </second_frame>
            <third_frame>   I  Q  R  E  I  R  *  G  R  L  W  Q  C  I  Q  R  K  A  S  K  W  K  G  C  G  S  E  D  V  K  Q  A  *  I  W  W  A  R  F  Y  E  *  S  S  *  H  W  K  D  S  S  C  Q  C  G  W  T  R  G  I  L  C  *  G  N  *  A  C  S  C  I  R  L  H  A  Q  W  I  T  R  Q  V  Y  *  H  Q  *  R  R  K  S  S  V  K  L  A  E  E  V  *  H  Y  S  W  S  G  S  R  N  W  I  F  A  S  R  L  *  C  T  N  F  A  F  *  H  Q  T  T  Q  H  S  F  G  *  E  F  H  S  K  D  F  *  L  W  A  C  K  I  I  S  T  R  *  *  H  S  D  S  H  S  C  S  R  N  D  W  L  C  S  S  R  V  D  Q  Q  K  H  R  G  N  L  L  Q  S  *  C  L  Q  L  W  N  A  A  H  G  N  A  R  L  E  K  T  *  S  C  K  *  R  E  F  Q  P  I  F  S  L  L  Y  L  R  *  V  Q  Q  G  E  G  D  C  G  G  *  R  S  K  *  *  *  K  E  D  G  *  K  A  R  F  S  C  V  M  V  H  T  N  K  S  D  T  T  P  F  D  E  *  S  I  R  N  A  *  R  *  S  *  S  A  R  S  T  S  S  A  S  S  I  S  T  D  C  S  S  D  H  G  K  F  Y  D  I  F  F  *  F  N  G  F  V  R  K  Y  G  *  *  S  R  *  S  R  H  F  F  *  L  T  I  V  D  V  I  F  M  *   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02HBa0323A14.3" strand="+"/>
                <serials PGL_serial="7" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="51338" stop="52312"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>972</number_coding_nucleotides>
                  <number_encoded_amino_acids>324</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>GFKEKLGEGGYGSVYKGKLQSGRDVAVKMLSKPKSGGQDFMNEVASIGRIHHVNVVGLVGYCVEGTKRALVYDFMPNGSLDKYISISEEGSPLLSWQRKYDIILGVARGTGYLHRGCDVQILHFDIKPHNILLDENFIPKISDFGLAKLYPPGNSIVTLTAARGTIGYVAPELISRSIGEISYKADVYSFGMLLMEMLDLKRPEVANEENSSQYFPYYIYDKFNKGKEIVVDEEANDDEKKMARKLALVALWCIQTNPIQRPSMSRVLEMLEGEVEVLEVPPQPLQSQPIVHQIMGSSMTFSSDSMALLENTADNLVEVDISSD*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="8" PGL_strand="+" PGL_start="80744" PGL_stop="81487"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="80744" e_stop="81487"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.999"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.999">
            <gDNA_exon_boundary e_start="80744" e_stop="81487" e_length="744"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="80744" stop="81487"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E327630" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="8" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>AACGTTACATCGGAATTTGGTATAACAATGTTCCTGAACTTACTGTTGTTTGGGTTGCCAACAGAGATAACCCTGTTAATGGCACATCTGGGATTCTCACCATCGATTCAACTGGGAATCTTGTTATACGTCTCGATGCGGAAAGAAAAACTGCAGCCTGGAGAACAAATGTTTCTTCAGCTAGGAAACGAGCAGACTCGTATACAGCTAAGCTGGAGGATTCAGGGAATTTTGTGTTGTTTCAAGACTCCAAAATGGATGTTATTGAATGGCAGAGCTTTGATTATCCTACCAATACTCTGCTTCCTTCAATGAAATATGGGATAGACAAGAGAACGGGATTGAACCGGTTTCTGACATCATGGAAATCGTTGATCGATCCAGGCACTGGAGAGTATCGTTACACAATGGAGCTCAATGGGACACCTCAAGTTTTCTTGTACAAGAACTCTAGCAGGATTTGGCGGACAGGATCCTGGACGGGTCATGGTTGGAGTGGTGTACCAGAAATGAGCCCGCGATTCATCTTCAGCCTTAGTTATGTAGACAATGATACCGAGGTTTCCTTGACATATGGCATACATGACAGTTCAATAATCTCAAGAATGGTCCTGAATGAATCTGGGATCGTGAACCGGTTAACTTGGCAAGAGAGTGAGCGAAAGTGGGTGCAATTCTGGTCTGCCCCTAAAGACCCTTGTGACAATTATGAACATTGTGGAGCATTTAGCAATTGGCAATCTG</gDNA_template>
            <first_frame> N  V  T  S  E  F  G  I  T  M  F  L  N  L  L  L  F  G  L  P  T  E  I  T  L  L  M  A  H  L  G  F  S  P  S  I  Q  L  G  I  L  L  Y  V  S  M  R  K  E  K  L  Q  P  G  E  Q  M  F  L  Q  L  G  N  E  Q  T  R  I  Q  L  S  W  R  I  Q  G  I  L  C  C  F  K  T  P  K  W  M  L  L  N  G  R  A  L  I  I  L  P  I  L  C  F  L  Q  *  N  M  G  *  T  R  E  R  D  *  T  G  F  *  H  H  G  N  R  *  S  I  Q  A  L  E  S  I  V  T  Q  W  S  S  M  G  H  L  K  F  S  C  T  R  T  L  A  G  F  G  G  Q  D  P  G  R  V  M  V  G  V  V  Y  Q  K  *  A  R  D  S  S  S  A  L  V  M  *  T  M  I  P  R  F  P  *  H  M  A  Y  M  T  V  Q  *  S  Q  E  W  S  *  M  N  L  G  S  *  T  G  *  L  G  K  R  V  S  E  S  G  C  N  S  G  L  P  L  K  T  L  V  T  I  M  N  I  V  E  H  L  A  I  G  N  L </first_frame>
            <second_frame>  T  L  H  R  N  L  V  *  Q  C  S  *  T  Y  C  C  L  G  C  Q  Q  R  *  P  C  *  W  H  I  W  D  S  H  H  R  F  N  W  E  S  C  Y  T  S  R  C  G  K  K  N  C  S  L  E  N  K  C  F  F  S  *  E  T  S  R  L  V  Y  S  *  A  G  G  F  R  E  F  C  V  V  S  R  L  Q  N  G  C  Y  *  M  A  E  L  *  L  S  Y  Q  Y  S  A  S  F  N  E  I  W  D  R  Q  E  N  G  I  E  P  V  S  D  I  M  E  I  V  D  R  S  R  H  W  R  V  S  L  H  N  G  A  Q  W  D  T  S  S  F  L  V  Q  E  L  *  Q  D  L  A  D  R  I  L  D  G  S  W  L  E  W  C  T  R  N  E  P  A  I  H  L  Q  P  *  L  C  R  Q  *  Y  R  G  F  L  D  I  W  H  T  *  Q  F  N  N  L  K  N  G  P  E  *  I  W  D  R  E  P  V  N  L  A  R  E  *  A  K  V  G  A  I  L  V  C  P  *  R  P  L  *  Q  L  *  T  L  W  S  I  *  Q  L  A  I   </second_frame>
            <third_frame>   R  Y  I  G  I  W  Y  N  N  V  P  E  L  T  V  V  W  V  A  N  R  D  N  P  V  N  G  T  S  G  I  L  T  I  D  S  T  G  N  L  V  I  R  L  D  A  E  R  K  T  A  A  W  R  T  N  V  S  S  A  R  K  R  A  D  S  Y  T  A  K  L  E  D  S  G  N  F  V  L  F  Q  D  S  K  M  D  V  I  E  W  Q  S  F  D  Y  P  T  N  T  L  L  P  S  M  K  Y  G  I  D  K  R  T  G  L  N  R  F  L  T  S  W  K  S  L  I  D  P  G  T  G  E  Y  R  Y  T  M  E  L  N  G  T  P  Q  V  F  L  Y  K  N  S  S  R  I  W  R  T  G  S  W  T  G  H  G  W  S  G  V  P  E  M  S  P  R  F  I  F  S  L  S  Y  V  D  N  D  T  E  V  S  L  T  Y  G  I  H  D  S  S  I  I  S  R  M  V  L  N  E  S  G  I  V  N  R  L  T  W  Q  E  S  E  R  K  W  V  Q  F  W  S  A  P  K  D  P  C  D  N  Y  E  H  C  G  A  F  S  N  W  Q  S  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02HBa0323A14.3" strand="+"/>
                <serials PGL_serial="8" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="80746" stop="81486"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>741</number_coding_nucleotides>
                  <number_encoded_amino_acids>247</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>RYIGIWYNNVPELTVVWVANRDNPVNGTSGILTIDSTGNLVIRLDAERKTAAWRTNVSSARKRADSYTAKLEDSGNFVLFQDSKMDVIEWQSFDYPTNTLLPSMKYGIDKRTGLNRFLTSWKSLIDPGTGEYRYTMELNGTPQVFLYKNSSRIWRTGSWTGHGWSGVPEMSPRFIFSLSYVDNDTEVSLTYGIHDSSIISRMVLNESGIVNRLTWQESERKWVQFWSAPKDPCDNYEHCGAFSNWQS</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="9" PGL_strand="+" PGL_start="82054" PGL_stop="83236"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="82054" e_stop="82142"/>
            <exon e_start="82332" e_stop="82489"/>
            <exon e_start="82646" e_stop="82856"/>
            <exon e_start="82979" e_stop="83236"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.987" acc_prob="0.933" e_score="1.000"/>
          <exon-intron don_prob="0.999" acc_prob="0.893" e_score="1.000"/>
          <exon-intron don_prob="0.671" acc_prob="0.623" e_score="1.000"/>
          <exon-only e_score="0.988"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="82054" e_stop="82142" e_length="89"/>
          </exon>
          <intron i_serial="1" don_prob="0.987" acc_prob="0.933">
            <gDNA_intron_boundary i_start="82143" i_stop="82331" i_length="189"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="82332" e_stop="82489" e_length="158"/>
          </exon>
          <intron i_serial="2" don_prob="0.999" acc_prob="0.893">
            <gDNA_intron_boundary i_start="82490" i_stop="82645" i_length="156"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="82646" e_stop="82856" e_length="211"/>
          </exon>
          <intron i_serial="3" don_prob="0.671" acc_prob="0.623">
            <gDNA_intron_boundary i_start="82857" i_stop="82978" i_length="122"/>
          </intron>
          <exon e_serial="4" e_score="0.988">
            <gDNA_exon_boundary e_start="82979" e_stop="83236" e_length="258"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="82054" stop="82142"/>
              <exon start="82332" stop="82489"/>
              <exon start="82646" stop="82856"/>
              <exon start="82979" stop="83236"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E325597" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="82054" stop="82142"/>
              <exon start="82332" stop="82489"/>
              <exon start="82646" stop="82825"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E325738" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="9" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>AATGATAGGGATTCTAGTAGGGTCTGCTGCAGCAATAATTCTTGCACTCTCTTTGGCATGTTGTTTGGTGATCAATATAAGGGGAAATG : ATAATGAAAGAAGTGAAAGTTTAGCATCCTATGACGGCATGGAAGAAAGTAAACATGCAGAAATCACTATCTTTGATCTAACCACAATAACTAATGCCACTGATCAGTTCTCTGATGCTAACAAACTTGGTGAAGGAGGATTTGGTAGCGTATACAAG : GGTCACCTGACAGATGGACAAGTAATAGCTGTCAAAAGACTTTCAGTAACTTCGGGGCAAGGGACGGAGGAGTTCAAGAATGAAGTCACAGTAATTGCAAGACTTCAGCACAGAAATTTGGTGAGGCTTTTAGGATGTTGCGTTCAACGAGGAGAGAAGATGTTGGTTTATGAATATATGCCAAACAAATCCTTGGACAGTTTTATTTTTG : ATCTCTTATTCACCAACTTTCAAACGGTGATCTAGATAAAACAAAAGGGTCTTTGTTGGATTGGGGAAAACGGTTTGGAATCATACATGGGATTGCACGAGGAATGTTATACCTTCACCAAGACTCTAGACTAAGAATTATTCATAGAGACCTAAAAGCAAGCAATGTTTTACTCGATGCCTCCATGCAACCGAAAATATCAGACTTTGGAATGGCCAGAATATTTGGAGGTGACCAAATGGAAGCAAACACAAATCG</gDNA_template>
            <first_frame> N  D  R  D  S  S  R  V  C  C  S  N  N  S  C  T  L  F  G  M  L  F  G  D  Q  Y  K  G  K  * :   *  *  K  K  *  K  F  S  I  L  *  R  H  G  R  K  *  T  C  R  N  H  Y  L  *  S  N  H  N  N  *  C  H  *  S  V  L  *  C  *  Q  T  W  *  R  R  I  W  *  R  I  Q   : G  S  P  D  R  W  T  S  N  S  C  Q  K  T  F  S  N  F  G  A  R  D  G  G  V  Q  E  *  S  H  S  N  C  K  T  S  A  Q  K  F  G  E  A  F  R  M  L  R  S  T  R  R  E  D  V  G  L  *  I  Y  A  K  Q  I  L  G  Q  F  Y  F  * :   S  L  I  H  Q  L  S  N  G  D  L  D  K  T  K  G  S  L  L  D  W  G  K  R  F  G  I  I  H  G  I  A  R  G  M  L  Y  L  H  Q  D  S  R  L  R  I  I  H  R  D  L  K  A  S  N  V  L  L  D  A  S  M  Q  P  K  I  S  D  F  G  M  A  R  I  F  G  G  D  Q  M  E  A  N  T  N   </first_frame>
            <second_frame>  M  I  G  I  L  V  G  S  A  A  A  I  I  L  A  L  S  L  A  C  C  L  V  I  N  I  R  G  N   : D  N  E  R  S  E  S  L  A  S  Y  D  G  M  E  E  S  K  H  A  E  I  T  I  F  D  L  T  T  I  T  N  A  T  D  Q  F  S  D  A  N  K  L  G  E  G  G  F  G  S  V  Y  K  :  G  H  L  T  D  G  Q  V  I  A  V  K  R  L  S  V  T  S  G  Q  G  T  E  E  F  K  N  E  V  T  V  I  A  R  L  Q  H  R  N  L  V  R  L  L  G  C  C  V  Q  R  G  E  K  M  L  V  Y  E  Y  M  P  N  K  S  L  D  S  F  I  F   : D  L  L  F  T  N  F  Q  T  V  I  *  I  K  Q  K  G  L  C  W  I  G  E  N  G  L  E  S  Y  M  G  L  H  E  E  C  Y  T  F  T  K  T  L  D  *  E  L  F  I  E  T  *  K  Q  A  M  F  Y  S  M  P  P  C  N  R  K  Y  Q  T  L  E  W  P  E  Y  L  E  V  T  K  W  K  Q  T  Q  I  </second_frame>
            <third_frame>   *  *  G  F  *  *  G  L  L  Q  Q  *  F  L  H  S  L  W  H  V  V  W  *  S  I  *  G  E  M  :  I  M  K  E  V  K  V  *  H  P  M  T  A  W  K  K  V  N  M  Q  K  S  L  S  L  I  *  P  Q  *  L  M  P  L  I  S  S  L  M  L  T  N  L  V  K  E  D  L  V  A  Y  T  R :   V  T  *  Q  M  D  K  *  *  L  S  K  D  F  Q  *  L  R  G  K  G  R  R  S  S  R  M  K  S  Q  *  L  Q  D  F  S  T  E  I  W  *  G  F  *  D  V  A  F  N  E  E  R  R  C  W  F  M  N  I  C  Q  T  N  P  W  T  V  L  F  L  :  I  S  Y  S  P  T  F  K  R  *  S  R  *  N  K  R  V  F  V  G  L  G  K  T  V  W  N  H  T  W  D  C  T  R  N  V  I  P  S  P  R  L  *  T  K  N  Y  S  *  R  P  K  S  K  Q  C  F  T  R  C  L  H  A  T  E  N  I  R  L  W  N  G  Q  N  I  W  R  *  P  N  G  S  K  H  K  S </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02HBa0323A14.3" strand="+"/>
                <serials PGL_serial="9" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="82055" stop="82142"/>
                    <exon start="82332" stop="82489"/>
                    <exon start="82646" stop="82856"/>
                    <exon start="82979" stop="83013"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>489</number_coding_nucleotides>
                  <number_encoded_amino_acids>163</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>MIGILVGSAAAIILALSLACCLVINIRGNDNERSESLASYDGMEESKHAEITIFDLTTITNATDQFSDANKLGEGGFGSVYKGHLTDGQVIAVKRLSVTSGQGTEEFKNEVTVIARLQHRNLVRLLGCCVQRGEKMLVYEYMPNKSLDSFIFDLLFTNFQTVI*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="10" PGL_strand="-" PGL_start="84257" PGL_stop="83989"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="84257" e_stop="83989"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.967"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.967">
            <gDNA_exon_boundary e_start="84257" e_stop="83989" e_length="269"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="84257" stop="83989"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E249503" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="10" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>ATCAAACACTTCTGAATGTGAATGCGCTTCCATTAACTGCCTTAACACAACTGACAAAGGGCGCCATTTAATTCACAGATGGAGTAGAAACCCTCTGTGTTTATGCTTCTTTCCTATCAATCCTTTGCCACCCACCTACCTTTAAGTCTATAACATGGACCATGGGGAATCATAAGTTAGATAGTAAAGAAAAAGGAATTTTGTATTTCTTTCGAAATAGTTATTGAATAGTTAGCATAAGCTCTAGCGACCATGAACTGTTGAAATAG</gDNA_template>
            <first_frame> I  K  H  F  *  M  *  M  R  F  H  *  L  P  *  H  N  *  Q  R  A  P  F  N  S  Q  M  E  *  K  P  S  V  F  M  L  L  S  Y  Q  S  F  A  T  H  L  P  L  S  L  *  H  G  P  W  G  I  I  S  *  I  V  K  K  K  E  F  C  I  S  F  E  I  V  I  E  *  L  A  *  A  L  A  T  M  N  C  *  N   </first_frame>
            <second_frame>  S  N  T  S  E  C  E  C  A  S  I  N  C  L  N  T  T  D  K  G  R  H  L  I  H  R  W  S  R  N  P  L  C  L  C  F  F  P  I  N  P  L  P  P  T  Y  L  *  V  Y  N  M  D  H  G  E  S  *  V  R  *  *  R  K  R  N  F  V  F  L  S  K  *  L  L  N  S  *  H  K  L  *  R  P  *  T  V  E  I  </second_frame>
            <third_frame>   Q  T  L  L  N  V  N  A  L  P  L  T  A  L  T  Q  L  T  K  G  A  I  *  F  T  D  G  V  E  T  L  C  V  Y  A  S  F  L  S  I  L  C  H  P  P  T  F  K  S  I  T  W  T  M  G  N  H  K  L  D  S  K  E  K  G  I  L  Y  F  F  R  N  S  Y  *  I  V  S  I  S  S  S  D  H  E  L  L  K  * </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <none gDNA_id="C02HBa0323A14.3"/>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="11" PGL_strand="-" PGL_start="87002" PGL_stop="86594"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="87002" e_stop="86594"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.910"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.910">
            <gDNA_exon_boundary e_start="87002" e_stop="86594" e_length="409"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="87002" stop="86773"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E261310" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="86992" stop="86594"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E262800" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="86935" stop="86608"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E258205" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="11" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>AGACAGGTTCCTTGCTGAAAATGGCTATAAAAGGAAGTCAATTTTTGATTATTTTTTAATCACTGAAATTTTTTCTTTCTCTGCATTTATTTTTCTCTCAAATAAAATCAAAGTGTCGATCGACTGAGTCTGTGTGACTTATTGCTGTTCTTCAGTTCGTTGAAGTTAAAGAAGTTTGAGGTACCGCTATTTCTTTAACAGGTTTAATCCGTTTTATCTTGGGAGAAATTAATCCATAACCTTGGGTACAGTGAGGGGATTAAATTTCTTAAGGACATACAGTAGTTCCTGTGGATTCGGATTAATTCTTCTATTTTAAATTTTTTCTGCTTCATCTTGTTTCTGTTTCTGTTCATTAACTTCATAAATACAAGTTATTGTAAGAATAACACTCGCAAGCTGCGTCTTA</gDNA_template>
            <first_frame> R  Q  V  P  C  *  K  W  L  *  K  E  V  N  F  *  L  F  F  N  H  *  N  F  F  F  L  C  I  Y  F  S  L  K  *  N  Q  S  V  D  R  L  S  L  C  D  L  L  L  F  F  S  S  L  K  L  K  K  F  E  V  P  L  F  L  *  Q  V  *  S  V  L  S  W  E  K  L  I  H  N  L  G  Y  S  E  G  I  K  F  L  K  D  I  Q  *  F  L  W  I  R  I  N  S  S  I  L  N  F  F  C  F  I  L  F  L  F  L  F  I  N  F  I  N  T  S  Y  C  K  N  N  T  R  K  L  R  L  </first_frame>
            <second_frame>  D  R  F  L  A  E  N  G  Y  K  R  K  S  I  F  D  Y  F  L  I  T  E  I  F  S  F  S  A  F  I  F  L  S  N  K  I  K  V  S  I  D  *  V  C  V  T  Y  C  C  S  S  V  R  *  S  *  R  S  L  R  Y  R  Y  F  F  N  R  F  N  P  F  Y  L  G  R  N  *  S  I  T  L  G  T  V  R  G  L  N  F  L  R  T  Y  S  S  S  C  G  F  G  L  I  L  L  F  *  I  F  S  A  S  S  C  F  C  F  C  S  L  T  S  *  I  Q  V  I  V  R  I  T  L  A  S  C  V  L </second_frame>
            <third_frame>   T  G  S  L  L  K  M  A  I  K  G  S  Q  F  L  I  I  F  *  S  L  K  F  F  L  S  L  H  L  F  F  S  Q  I  K  S  K  C  R  S  T  E  S  V  *  L  I  A  V  L  Q  F  V  E  V  K  E  V  *  G  T  A  I  S  L  T  G  L  I  R  F  I  L  G  E  I  N  P  *  P  W  V  Q  *  G  D  *  I  S  *  G  H  T  V  V  P  V  D  S  D  *  F  F  Y  F  K  F  F  L  L  H  L  V  S  V  S  V  H  *  L  H  K  Y  K  L  L  *  E  *  H  S  Q  A  A  S   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <none gDNA_id="C02HBa0323A14.3"/>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="12" PGL_strand="+" PGL_start="111770" PGL_stop="113189"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="111770" e_stop="113189"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.997"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.997">
            <gDNA_exon_boundary e_start="111770" e_stop="113189" e_length="1420"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="111770" stop="112508"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E720345" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="111794" stop="112327"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E366123" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="111803" stop="112567"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E539325" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="111804" stop="112254"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E283949" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="112396" stop="113189"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E539322" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="12" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>AAAGAGAATCTAGAGAGAGAAAACAGAAACCCATTTCCCAGAAAGAACACAAAAATAGAAATGGCAACTTCAACCCAGTTCCCGGACGATTTTCGGTGCCCGATTTCCCTTGAAATTATGTCCGACCCGGTTATTCTGTCGTCGGGTCACACCTTCGACCGCTCTTCAATCCAACGGTGGGTAGACTCCGGCCACCGGACTTGCCCGATTACCAAGCTACCCATTTCCGACCCGGTTTCTCTCATCCCTAATCATGCCCTTCGGAGTCTCATTTCCAATTATACCCTCGTCTCTTTCCCCAAACCACTCACATACCCTGAACCGCAGTCCCTTATTCAAACCCTTATTGCTTCTTCTTCTTCTAATTTGGATTCTAAGCTCCACTCGCTTGACCAACTCAGTAAGCTTTCCAAGCGTGATTTGGCGATCCGAAGGAAACTCACCGAGTCGGGCGCTGTATCTGCTCTTCTCAATTGCGTTAACTCGGATGATGACTCGGGTGGTTTGCAGGAGAAAGCGCTTCATTTGTTGTTGAATTTGAGCTTGGATGATGATAACAAAGTGGGGTTGGTGGCAGAAGGGGTTGTGGGGAAAGTGGTCTCCTCTTTACGAAGAGGTGCTGGAGACTCGAGGGCGGTGGCGGCCACGGTTTTGACGAGTTTAGCGGTGGTGGAAGTGAATAAGGCAACCATTGGGGCATACCCAGATGCAATTCCAGGGTTAATTTCGCTGCTTTGGGGTGGCAGCGGTAGAGAGAGAAAGGAAGCTGCTACTGCTCTCTACACGCTGTGCTCTTTCCCGGATAATCGGGTTCGGGCCGTGCAGAACCAGGCTGTTCCAGTACTAATTAAGAATGCTAATTTAGGCCTAGAAAGATCAGTTGAGGTATTGGGATTATTAGCAAAATGTAAAGAGGGTCGTTATGAAATGTTTAAATACTGTGGGTTGTTGGATATTTTGATAAAATTCTTGAAAAATGGGTCTTCAAGAGCTGTGCAATATGGTCTTTTGACTATCAGCTTGCTGTGTAGTTACAGTGAAAGGATGCGTGTGTTGGCTGTAAGAGAAGGGGTGTTTGAGATTTCTGTTGGGTTATTACAAGATGATAATGAGAAAGTGAGAAGAAATGCTAATAGCTTGATTCAGGTTTTACAAGGGCAAACATTAAGTCTTTGAGATATGAATTTGGAAAGTGTTGATTTTGAATGGATTATTGGAAGCTTTGGAGGGTGAAGAAGAAGAAGGTGAGTTTTTAGGCTTCCTCATAATTATTTTTGTTGAATAGTTTTTCTTTGTACAAAAAGATTAGAATTTTAGGGCAAAAAATGTGCATCTCTCTTTTTCTCTATCAAAATCTCTTTTGTTTTTTTGGTTTTATATTATCAACATAAGAATAAGAATGAAAAGACAAACATCAATG</gDNA_template>
            <first_frame> K  E  N  L  E  R  E  N  R  N  P  F  P  R  K  N  T  K  I  E  M  A  T  S  T  Q  F  P  D  D  F  R  C  P  I  S  L  E  I  M  S  D  P  V  I  L  S  S  G  H  T  F  D  R  S  S  I  Q  R  W  V  D  S  G  H  R  T  C  P  I  T  K  L  P  I  S  D  P  V  S  L  I  P  N  H  A  L  R  S  L  I  S  N  Y  T  L  V  S  F  P  K  P  L  T  Y  P  E  P  Q  S  L  I  Q  T  L  I  A  S  S  S  S  N  L  D  S  K  L  H  S  L  D  Q  L  S  K  L  S  K  R  D  L  A  I  R  R  K  L  T  E  S  G  A  V  S  A  L  L  N  C  V  N  S  D  D  D  S  G  G  L  Q  E  K  A  L  H  L  L  L  N  L  S  L  D  D  D  N  K  V  G  L  V  A  E  G  V  V  G  K  V  V  S  S  L  R  R  G  A  G  D  S  R  A  V  A  A  T  V  L  T  S  L  A  V  V  E  V  N  K  A  T  I  G  A  Y  P  D  A  I  P  G  L  I  S  L  L  W  G  G  S  G  R  E  R  K  E  A  A  T  A  L  Y  T  L  C  S  F  P  D  N  R  V  R  A  V  Q  N  Q  A  V  P  V  L  I  K  N  A  N  L  G  L  E  R  S  V  E  V  L  G  L  L  A  K  C  K  E  G  R  Y  E  M  F  K  Y  C  G  L  L  D  I  L  I  K  F  L  K  N  G  S  S  R  A  V  Q  Y  G  L  L  T  I  S  L  L  C  S  Y  S  E  R  M  R  V  L  A  V  R  E  G  V  F  E  I  S  V  G  L  L  Q  D  D  N  E  K  V  R  R  N  A  N  S  L  I  Q  V  L  Q  G  Q  T  L  S  L  *  D  M  N  L  E  S  V  D  F  E  W  I  I  G  S  F  G  G  *  R  R  R  R  *  V  F  R  L  P  H  N  Y  F  C  *  I  V  F  L  C  T  K  R  L  E  F  *  G  K  K  C  A  S  L  F  F  S  I  K  I  S  F  V  F  L  V  L  Y  Y  Q  H  K  N  K  N  E  K  T  N  I  N  </first_frame>
            <second_frame>  K  R  I  *  R  E  K  T  E  T  H  F  P  E  R  T  Q  K  *  K  W  Q  L  Q  P  S  S  R  T  I  F  G  A  R  F  P  L  K  L  C  P  T  R  L  F  C  R  R  V  T  P  S  T  A  L  Q  S  N  G  G  *  T  P  A  T  G  L  A  R  L  P  S  Y  P  F  P  T  R  F  L  S  S  L  I  M  P  F  G  V  S  F  P  I  I  P  S  S  L  S  P  N  H  S  H  T  L  N  R  S  P  L  F  K  P  L  L  L  L  L  L  L  I  W  I  L  S  S  T  R  L  T  N  S  V  S  F  P  S  V  I  W  R  S  E  G  N  S  P  S  R  A  L  Y  L  L  F  S  I  A  L  T  R  M  M  T  R  V  V  C  R  R  K  R  F  I  C  C  *  I  *  A  W  M  M  I  T  K  W  G  W  W  Q  K  G  L  W  G  K  W  S  P  L  Y  E  E  V  L  E  T  R  G  R  W  R  P  R  F  *  R  V  *  R  W  W  K  *  I  R  Q  P  L  G  H  T  Q  M  Q  F  Q  G  *  F  R  C  F  G  V  A  A  V  E  R  E  R  K  L  L  L  L  S  T  R  C  A  L  S  R  I  I  G  F  G  P  C  R  T  R  L  F  Q  Y  *  L  R  M  L  I  *  A  *  K  D  Q  L  R  Y  W  D  Y  *  Q  N  V  K  R  V  V  M  K  C  L  N  T  V  G  C  W  I  F  *  *  N  S  *  K  M  G  L  Q  E  L  C  N  M  V  F  *  L  S  A  C  C  V  V  T  V  K  G  C  V  C  W  L  *  E  K  G  C  L  R  F  L  L  G  Y  Y  K  M  I  M  R  K  *  E  E  M  L  I  A  *  F  R  F  Y  K  G  K  H  *  V  F  E  I  *  I  W  K  V  L  I  L  N  G  L  L  E  A  L  E  G  E  E  E  E  G  E  F  L  G  F  L  I  I  I  F  V  E  *  F  F  F  V  Q  K  D  *  N  F  R  A  K  N  V  H  L  S  F  S  L  S  K  S  L  L  F  F  W  F  Y  I  I  N  I  R  I  R  M  K  R  Q  T  S  M </second_frame>
            <third_frame>   R  E  S  R  E  R  K  Q  K  P  I  S  Q  K  E  H  K  N  R  N  G  N  F  N  P  V  P  G  R  F  S  V  P  D  F  P  *  N  Y  V  R  P  G  Y  S  V  V  G  S  H  L  R  P  L  F  N  P  T  V  G  R  L  R  P  P  D  L  P  D  Y  Q  A  T  H  F  R  P  G  F  S  H  P  *  S  C  P  S  E  S  H  F  Q  L  Y  P  R  L  F  P  Q  T  T  H  I  P  *  T  A  V  P  Y  S  N  P  Y  C  F  F  F  F  *  F  G  F  *  A  P  L  A  *  P  T  Q  *  A  F  Q  A  *  F  G  D  P  K  E  T  H  R  V  G  R  C  I  C  S  S  Q  L  R  *  L  G  *  *  L  G  W  F  A  G  E  S  A  S  F  V  V  E  F  E  L  G  *  *  *  Q  S  G  V  G  G  R  R  G  C  G  E  S  G  L  L  F  T  K  R  C  W  R  L  E  G  G  G  G  H  G  F  D  E  F  S  G  G  G  S  E  *  G  N  H  W  G  I  P  R  C  N  S  R  V  N  F  A  A  L  G  W  Q  R  *  R  E  K  G  S  C  Y  C  S  L  H  A  V  L  F  P  G  *  S  G  S  G  R  A  E  P  G  C  S  S  T  N  *  E  C  *  F  R  P  R  K  I  S  *  G  I  G  I  I  S  K  M  *  R  G  S  L  *  N  V  *  I  L  W  V  V  G  Y  F  D  K  I  L  E  K  W  V  F  K  S  C  A  I  W  S  F  D  Y  Q  L  A  V  *  L  Q  *  K  D  A  C  V  G  C  K  R  R  G  V  *  D  F  C  W  V  I  T  R  *  *  *  E  S  E  K  K  C  *  *  L  D  S  G  F  T  R  A  N  I  K  S  L  R  Y  E  F  G  K  C  *  F  *  M  D  Y  W  K  L  W  R  V  K  K  K  K  V  S  F  *  A  S  S  *  L  F  L  L  N  S  F  S  L  Y  K  K  I  R  I  L  G  Q  K  M  C  I  S  L  F  L  Y  Q  N  L  F  C  F  F  G  F  I  L  S  T  *  E  *  E  *  K  D  K  H  Q   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02HBa0323A14.3" strand="+"/>
                <serials PGL_serial="12" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="111770" stop="112945"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>1173</number_coding_nucleotides>
                  <number_encoded_amino_acids>391</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>KENLERENRNPFPRKNTKIEMATSTQFPDDFRCPISLEIMSDPVILSSGHTFDRSSIQRWVDSGHRTCPITKLPISDPVSLIPNHALRSLISNYTLVSFPKPLTYPEPQSLIQTLIASSSSNLDSKLHSLDQLSKLSKRDLAIRRKLTESGAVSALLNCVNSDDDSGGLQEKALHLLLNLSLDDDNKVGLVAEGVVGKVVSSLRRGAGDSRAVAATVLTSLAVVEVNKATIGAYPDAIPGLISLLWGGSGRERKEAATALYTLCSFPDNRVRAVQNQAVPVLIKNANLGLERSVEVLGLLAKCKEGRYEMFKYCGLLDILIKFLKNGSSRAVQYGLLTISLLCSYSERMRVLAVREGVFEISVGLLQDDNEKVRRNANSLIQVLQGQTLSL*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="13" PGL_strand="+" PGL_start="122599" PGL_stop="125294"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="122599" e_stop="122695"/>
            <exon e_start="123813" e_stop="123906"/>
            <exon e_start="124353" e_stop="124613"/>
            <exon e_start="124714" e_stop="125294"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.998" acc_prob="0.894" e_score="1.000"/>
          <exon-intron don_prob="0.998" acc_prob="0.999" e_score="1.000"/>
          <exon-intron don_prob="0.956" acc_prob="0.995" e_score="0.985"/>
          <exon-only e_score="0.995"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="122599" e_stop="122695" e_length="97"/>
          </exon>
          <intron i_serial="1" don_prob="0.998" acc_prob="0.894">
            <gDNA_intron_boundary i_start="122696" i_stop="123812" i_length="1117"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="123813" e_stop="123906" e_length="94"/>
          </exon>
          <intron i_serial="2" don_prob="0.998" acc_prob="0.999">
            <gDNA_intron_boundary i_start="123907" i_stop="124352" i_length="446"/>
          </intron>
          <exon e_serial="3" e_score="0.985">
            <gDNA_exon_boundary e_start="124353" e_stop="124613" e_length="261"/>
          </exon>
          <intron i_serial="3" don_prob="0.956" acc_prob="0.995">
            <gDNA_intron_boundary i_start="124614" i_stop="124713" i_length="100"/>
          </intron>
          <exon e_serial="4" e_score="0.995">
            <gDNA_exon_boundary e_start="124714" e_stop="125294" e_length="581"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="122599" stop="122695"/>
              <exon start="123813" stop="123906"/>
              <exon start="124353" stop="124613"/>
              <exon start="124714" stop="124758"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E329240" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="122606" stop="122695"/>
              <exon start="123813" stop="123906"/>
              <exon start="124353" stop="124613"/>
              <exon start="124714" stop="124793"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E311071" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="122611" stop="122695"/>
              <exon start="123813" stop="123906"/>
              <exon start="124353" stop="124613"/>
              <exon start="124714" stop="124845"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E309132" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="122613" stop="122695"/>
              <exon start="123813" stop="123906"/>
              <exon start="124353" stop="124613"/>
              <exon start="124714" stop="124758"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E307400" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="122614" stop="122695"/>
              <exon start="123813" stop="123906"/>
              <exon start="124353" stop="124613"/>
              <exon start="124714" stop="124791"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E309201" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="122615" stop="122695"/>
              <exon start="123813" stop="123906"/>
              <exon start="124353" stop="124613"/>
              <exon start="124714" stop="124791"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E319198" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="122622" stop="122695"/>
              <exon start="123813" stop="123906"/>
              <exon start="124353" stop="124586"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E338481" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="122636" stop="122695"/>
              <exon start="123813" stop="123906"/>
              <exon start="124353" stop="124522"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E287632" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="122639" stop="122695"/>
              <exon start="123813" stop="123906"/>
              <exon start="124353" stop="124613"/>
              <exon start="124714" stop="124721"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E308740" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="122677" stop="122695"/>
              <exon start="123813" stop="123906"/>
              <exon start="124353" stop="124613"/>
              <exon start="124714" stop="125159"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E712250" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="123855" stop="123906"/>
              <exon start="124353" stop="124613"/>
              <exon start="124714" stop="125085"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E343907" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="124454" stop="124613"/>
              <exon start="124714" stop="125162"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E541820" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="124505" stop="124613"/>
              <exon start="124714" stop="125049"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E220596" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="124540" stop="124613"/>
              <exon start="124714" stop="125159"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E735117" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="124573" stop="124613"/>
              <exon start="124714" stop="125162"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E357454" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="124604" stop="124613"/>
              <exon start="124714" stop="125189"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E353483" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="124604" stop="124613"/>
              <exon start="124714" stop="125189"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E350273" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="124604" stop="124613"/>
              <exon start="124714" stop="125189"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E352302" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="124607" stop="124613"/>
              <exon start="124714" stop="125294"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E309133" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="124870" stop="125049"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E220459" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="13" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>CCATCACCATTCTCTTTCTTTTCTATTCTATTCCAACAACAACTCATTCATCCACCTACTACTTTCCCTTTCAAATGGCAACCAAAGTCTACATTGT : TTACTACTCCATGTATGGACATGTTGAGAAGCTAGCACAAGAGATAAAGAAAGGAGCCGCATCAGTTGAAGGCGTAGAAGCCAAACTATGGCAG : GTACCAGAAACTCTTTCAGAAGAGGTTCTTGGAAAGATGGGTGGACCAGCAAAAGCGATGCCCAATTATCACACCCAATGACCTTGCTGAAGCTGATGGCTTTGTGTTTGGATTCCCAACAAGATTTGGGATGATGGCTGCTCAGTTCAAGGCATTTCTTGATGCCACTGGTGGTCTCTGGAGAACTCAGCAGCTTGCAGGCAAGCCAGCGGGCCTTTTCTACAGTACTGGCTCTCAAGGAGGTGGCCAAGAGACTACTGC : GTTGACTGCAATTACTCAGCTTGTTCACCATGGAATGATCTTTGTCCCGATTGGTTACACATTTGGTGCTGGCATGTTCGAGATGGAGAAGATTAAAGGTGGAAGTCCTTACGGTGCAGGAACTTTTGCTGGAGATGGCTCTAGACAGCCAACAGATCTTGAACTGGAGCAAGCTTTCCACCAGGGAAAACACATTGCTACCATCGCAAAGAAGCTCAAAGGCTCTGCTTGATTGTTTCACTACAAACTCATGTCCTATTGCATTCTGCTGTCCATTTTTTTTTCCCCTATGTCTAGTATACTCTTGTTTTAAGTTGCATTTCTACTACAAAAAAACAATAAGTGATTATTATCTATTATATCAGCATATATATATAGGGTCAGTGTCTATCACAGTTTACAGAGGTTGTTTACATGTTCTATGAATCATACTTAATTTTTTTTTTCTCATTTCATAATCAATGGCTACAGCAACAATCCCTTTATCTCTCTCTCTCCCAACCCCCCAATTATGTTACTCGATGTCAATTTGATAAGAAGATTTTTGTGATCCAATCCCAATAAGTTGGCTCAAACTACAA</gDNA_template>
            <first_frame> P  S  P  F  S  F  F  S  I  L  F  Q  Q  Q  L  I  H  P  P  T  T  F  P  F  K  W  Q  P  K  S  T  L   : F  T  T  P  C  M  D  M  L  R  S  *  H  K  R  *  R  K  E  P  H  Q  L  K  A  *  K  P  N  Y  G  R :   Y  Q  K  L  F  Q  K  R  F  L  E  R  W  V  D  Q  Q  K  R  C  P  I  I  T  P  N  D  L  A  E  A  D  G  F  V  F  G  F  P  T  R  F  G  M  M  A  A  Q  F  K  A  F  L  D  A  T  G  G  L  W  R  T  Q  Q  L  A  G  K  P  A  G  L  F  Y  S  T  G  S  Q  G  G  G  Q  E  T  T  A :   L  T  A  I  T  Q  L  V  H  H  G  M  I  F  V  P  I  G  Y  T  F  G  A  G  M  F  E  M  E  K  I  K  G  G  S  P  Y  G  A  G  T  F  A  G  D  G  S  R  Q  P  T  D  L  E  L  E  Q  A  F  H  Q  G  K  H  I  A  T  I  A  K  K  L  K  G  S  A  *  L  F  H  Y  K  L  M  S  Y  C  I  L  L  S  I  F  F  S  P  M  S  S  I  L  L  F  *  V  A  F  L  L  Q  K  N  N  K  *  L  L  S  I  I  S  A  Y  I  Y  R  V  S  V  Y  H  S  L  Q  R  L  F  T  C  S  M  N  H  T  *  F  F  F  S  H  F  I  I  N  G  Y  S  N  N  P  F  I  S  L  S  P  N  P  P  I  M  L  L  D  V  N  L  I  R  R  F  L  *  S  N  P  N  K  L  A  Q  T  T  </first_frame>
            <second_frame>  H  H  H  S  L  S  F  L  F  Y  S  N  N  N  S  F  I  H  L  L  L  S  L  S  N  G  N  Q  S  L  H  C  :  L  L  L  H  V  W  T  C  *  E  A  S  T  R  D  K  E  R  S  R  I  S  *  R  R  R  S  Q  T  M  A   : G  T  R  N  S  F  R  R  G  S  W  K  D  G  W  T  S  K  S  D  A  Q  L  S  H  P  M  T  L  L  K  L  M  A  L  C  L  D  S  Q  Q  D  L  G  *  W  L  L  S  S  R  H  F  L  M  P  L  V  V  S  G  E  L  S  S  L  Q  A  S  Q  R  A  F  S  T  V  L  A  L  K  E  V  A  K  R  L  L   : R  *  L  Q  L  L  S  L  F  T  M  E  *  S  L  S  R  L  V  T  H  L  V  L  A  C  S  R  W  R  R  L  K  V  E  V  L  T  V  Q  E  L  L  L  E  M  A  L  D  S  Q  Q  I  L  N  W  S  K  L  S  T  R  E  N  T  L  L  P  S  Q  R  S  S  K  A  L  L  D  C  F  T  T  N  S  C  P  I  A  F  C  C  P  F  F  F  P  L  C  L  V  Y  S  C  F  K  L  H  F  Y  Y  K  K  T  I  S  D  Y  Y  L  L  Y  Q  H  I  Y  I  G  S  V  S  I  T  V  Y  R  G  C  L  H  V  L  *  I  I  L  N  F  F  F  L  I  S  *  S  M  A  T  A  T  I  P  L  S  L  S  L  P  T  P  Q  L  C  Y  S  M  S  I  *  *  E  D  F  C  D  P  I  P  I  S  W  L  K  L  Q </second_frame>
            <third_frame>   I  T  I  L  F  L  F  Y  S  I  P  T  T  T  H  S  S  T  Y  Y  F  P  F  Q  M  A  T  K  V  Y  I  V :   Y  Y  S  M  Y  G  H  V  E  K  L  A  Q  E  I  K  K  G  A  A  S  V  E  G  V  E  A  K  L  W  Q  :  V  P  E  T  L  S  E  E  V  L  G  K  M  G  G  P  A  K  A  M  P  N  Y  H  T  Q  *  P  C  *  S  *  W  L  C  V  W  I  P  N  K  I  W  D  D  G  C  S  V  Q  G  I  S  *  C  H  W  W  S  L  E  N  S  A  A  C  R  Q  A  S  G  P  F  L  Q  Y  W  L  S  R  R  W  P  R  D  Y  C  :  V  D  C  N  Y  S  A  C  S  P  W  N  D  L  C  P  D  W  L  H  I  W  C  W  H  V  R  D  G  E  D  *  R  W  K  S  L  R  C  R  N  F  C  W  R  W  L  *  T  A  N  R  S  *  T  G  A  S  F  P  P  G  K  T  H  C  Y  H  R  K  E  A  Q  R  L  C  L  I  V  S  L  Q  T  H  V  L  L  H  S  A  V  H  F  F  F  P  Y  V  *  Y  T  L  V  L  S  C  I  S  T  T  K  K  Q  *  V  I  I  I  Y  Y  I  S  I  Y  I  *  G  Q  C  L  S  Q  F  T  E  V  V  Y  M  F  Y  E  S  Y  L  I  F  F  F  S  F  H  N  Q  W  L  Q  Q  Q  S  L  Y  L  S  L  S  Q  P  P  N  Y  V  T  R  C  Q  F  D  K  K  I  F  V  I  Q  S  Q  *  V  G  S  N  Y   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02HBa0323A14.3" strand="+"/>
                <serials PGL_serial="13" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="123890" stop="123906"/>
                    <exon start="124353" stop="124613"/>
                    <exon start="124714" stop="124945"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>507</number_coding_nucleotides>
                  <number_encoded_amino_acids>169</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>KPNYGRYQKLFQKRFLERWVDQQKRCPIITPNDLAEADGFVFGFPTRFGMMAAQFKAFLDATGGLWRTQQLAGKPAGLFYSTGSQGGGQETTALTAITQLVHHGMIFVPIGYTFGAGMFEMEKIKGGSPYGAGTFAGDGSRQPTDLELEQAFHQGKHIATIAKKLKGSA*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="2">
          <exon_coordinates>
            <exon e_start="123269" e_stop="123429"/>
            <exon e_start="123813" e_stop="123906"/>
            <exon e_start="124353" e_stop="124613"/>
            <exon e_start="124714" e_stop="125294"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.872" acc_prob="0.894" e_score="1.000"/>
          <exon-intron don_prob="0.998" acc_prob="0.999" e_score="1.000"/>
          <exon-intron don_prob="0.956" acc_prob="0.995" e_score="0.985"/>
          <exon-only e_score="0.995"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="123269" e_stop="123429" e_length="161"/>
          </exon>
          <intron i_serial="1" don_prob="0.872" acc_prob="0.894">
            <gDNA_intron_boundary i_start="123430" i_stop="123812" i_length="383"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="123813" e_stop="123906" e_length="94"/>
          </exon>
          <intron i_serial="2" don_prob="0.998" acc_prob="0.999">
            <gDNA_intron_boundary i_start="123907" i_stop="124352" i_length="446"/>
          </intron>
          <exon e_serial="3" e_score="0.985">
            <gDNA_exon_boundary e_start="124353" e_stop="124613" e_length="261"/>
          </exon>
          <intron i_serial="3" don_prob="0.956" acc_prob="0.995">
            <gDNA_intron_boundary i_start="124614" i_stop="124713" i_length="100"/>
          </intron>
          <exon e_serial="4" e_score="0.995">
            <gDNA_exon_boundary e_start="124714" e_stop="125294" e_length="581"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="123269" stop="123429"/>
              <exon start="123813" stop="123906"/>
              <exon start="124353" stop="124613"/>
              <exon start="124714" stop="124917"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E541822" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="123270" stop="123429"/>
              <exon start="123813" stop="123906"/>
              <exon start="124353" stop="124487"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E297099" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="123855" stop="123906"/>
              <exon start="124353" stop="124613"/>
              <exon start="124714" stop="125085"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E343907" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="124454" stop="124613"/>
              <exon start="124714" stop="125162"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E541820" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="124505" stop="124613"/>
              <exon start="124714" stop="125049"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E220596" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="124540" stop="124613"/>
              <exon start="124714" stop="125159"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E735117" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="124573" stop="124613"/>
              <exon start="124714" stop="125162"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E357454" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="124604" stop="124613"/>
              <exon start="124714" stop="125189"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E353483" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="124604" stop="124613"/>
              <exon start="124714" stop="125189"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E350273" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="124604" stop="124613"/>
              <exon start="124714" stop="125189"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E352302" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="124607" stop="124613"/>
              <exon start="124714" stop="125294"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E309133" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="124870" stop="125049"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E220459" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="13" AGS_serial="2" gDNA_strand="+"/>
          <translation>
            <gDNA_template>GTCTTTATGAGATGACATTCTTGAAATTGAATAATATTAACTTGAAGTTCCAAGATGGAGTTGTCGATATTACCATTGGTGCTAAATGATTTTGTTGATTAGAATCAACTATCATATAAATTTATGGCCTGAACTCCATAGTCTTTTCAAGATTCCTATTG : TTACTACTCCATGTATGGACATGTTGAGAAGCTAGCACAAGAGATAAAGAAAGGAGCCGCATCAGTTGAAGGCGTAGAAGCCAAACTATGGCAG : GTACCAGAAACTCTTTCAGAAGAGGTTCTTGGAAAGATGGGTGGACCAGCAAAAGCGATGCCCAATTATCACACCCAATGACCTTGCTGAAGCTGATGGCTTTGTGTTTGGATTCCCAACAAGATTTGGGATGATGGCTGCTCAGTTCAAGGCATTTCTTGATGCCACTGGTGGTCTCTGGAGAACTCAGCAGCTTGCAGGCAAGCCAGCGGGCCTTTTCTACAGTACTGGCTCTCAAGGAGGTGGCCAAGAGACTACTGC : GTTGACTGCAATTACTCAGCTTGTTCACCATGGAATGATCTTTGTCCCGATTGGTTACACATTTGGTGCTGGCATGTTCGAGATGGAGAAGATTAAAGGTGGAAGTCCTTACGGTGCAGGAACTTTTGCTGGAGATGGCTCTAGACAGCCAACAGATCTTGAACTGGAGCAAGCTTTCCACCAGGGAAAACACATTGCTACCATCGCAAAGAAGCTCAAAGGCTCTGCTTGATTGTTTCACTACAAACTCATGTCCTATTGCATTCTGCTGTCCATTTTTTTTTCCCCTATGTCTAGTATACTCTTGTTTTAAGTTGCATTTCTACTACAAAAAAACAATAAGTGATTATTATCTATTATATCAGCATATATATATAGGGTCAGTGTCTATCACAGTTTACAGAGGTTGTTTACATGTTCTATGAATCATACTTAATTTTTTTTTTCTCATTTCATAATCAATGGCTACAGCAACAATCCCTTTATCTCTCTCTCTCCCAACCCCCCAATTATGTTACTCGATGTCAATTTGATAAGAAGATTTTTGTGATCCAATCCCAATAAGTTGGCTCAAACTACAA</gDNA_template>
            <first_frame> V  F  M  R  *  H  S  *  N  *  I  I  L  T  *  S  S  K  M  E  L  S  I  L  P  L  V  L  N  D  F  V  D  *  N  Q  L  S  Y  K  F  M  A  *  T  P  *  S  F  Q  D  S  Y  C :   Y  Y  S  M  Y  G  H  V  E  K  L  A  Q  E  I  K  K  G  A  A  S  V  E  G  V  E  A  K  L  W  Q  :  V  P  E  T  L  S  E  E  V  L  G  K  M  G  G  P  A  K  A  M  P  N  Y  H  T  Q  *  P  C  *  S  *  W  L  C  V  W  I  P  N  K  I  W  D  D  G  C  S  V  Q  G  I  S  *  C  H  W  W  S  L  E  N  S  A  A  C  R  Q  A  S  G  P  F  L  Q  Y  W  L  S  R  R  W  P  R  D  Y  C  :  V  D  C  N  Y  S  A  C  S  P  W  N  D  L  C  P  D  W  L  H  I  W  C  W  H  V  R  D  G  E  D  *  R  W  K  S  L  R  C  R  N  F  C  W  R  W  L  *  T  A  N  R  S  *  T  G  A  S  F  P  P  G  K  T  H  C  Y  H  R  K  E  A  Q  R  L  C  L  I  V  S  L  Q  T  H  V  L  L  H  S  A  V  H  F  F  F  P  Y  V  *  Y  T  L  V  L  S  C  I  S  T  T  K  K  Q  *  V  I  I  I  Y  Y  I  S  I  Y  I  *  G  Q  C  L  S  Q  F  T  E  V  V  Y  M  F  Y  E  S  Y  L  I  F  F  F  S  F  H  N  Q  W  L  Q  Q  Q  S  L  Y  L  S  L  S  Q  P  P  N  Y  V  T  R  C  Q  F  D  K  K  I  F  V  I  Q  S  Q  *  V  G  S  N  Y   </first_frame>
            <second_frame>  S  L  *  D  D  I  L  E  I  E  *  Y  *  L  E  V  P  R  W  S  C  R  Y  Y  H  W  C  *  M  I  L  L  I  R  I  N  Y  H  I  N  L  W  P  E  L  H  S  L  F  K  I  P  I   : V  T  T  P  C  M  D  M  L  R  S  *  H  K  R  *  R  K  E  P  H  Q  L  K  A  *  K  P  N  Y  G  R :   Y  Q  K  L  F  Q  K  R  F  L  E  R  W  V  D  Q  Q  K  R  C  P  I  I  T  P  N  D  L  A  E  A  D  G  F  V  F  G  F  P  T  R  F  G  M  M  A  A  Q  F  K  A  F  L  D  A  T  G  G  L  W  R  T  Q  Q  L  A  G  K  P  A  G  L  F  Y  S  T  G  S  Q  G  G  G  Q  E  T  T  A :   L  T  A  I  T  Q  L  V  H  H  G  M  I  F  V  P  I  G  Y  T  F  G  A  G  M  F  E  M  E  K  I  K  G  G  S  P  Y  G  A  G  T  F  A  G  D  G  S  R  Q  P  T  D  L  E  L  E  Q  A  F  H  Q  G  K  H  I  A  T  I  A  K  K  L  K  G  S  A  *  L  F  H  Y  K  L  M  S  Y  C  I  L  L  S  I  F  F  S  P  M  S  S  I  L  L  F  *  V  A  F  L  L  Q  K  N  N  K  *  L  L  S  I  I  S  A  Y  I  Y  R  V  S  V  Y  H  S  L  Q  R  L  F  T  C  S  M  N  H  T  *  F  F  F  S  H  F  I  I  N  G  Y  S  N  N  P  F  I  S  L  S  P  N  P  P  I  M  L  L  D  V  N  L  I  R  R  F  L  *  S  N  P  N  K  L  A  Q  T  T  </second_frame>
            <third_frame>   L  Y  E  M  T  F  L  K  L  N  N  I  N  L  K  F  Q  D  G  V  V  D  I  T  I  G  A  K  *  F  C  *  L  E  S  T  I  I  *  I  Y  G  L  N  S  I  V  F  S  R  F  L  L  :  L  L  L  H  V  W  T  C  *  E  A  S  T  R  D  K  E  R  S  R  I  S  *  R  R  R  S  Q  T  M  A   : G  T  R  N  S  F  R  R  G  S  W  K  D  G  W  T  S  K  S  D  A  Q  L  S  H  P  M  T  L  L  K  L  M  A  L  C  L  D  S  Q  Q  D  L  G  *  W  L  L  S  S  R  H  F  L  M  P  L  V  V  S  G  E  L  S  S  L  Q  A  S  Q  R  A  F  S  T  V  L  A  L  K  E  V  A  K  R  L  L   : R  *  L  Q  L  L  S  L  F  T  M  E  *  S  L  S  R  L  V  T  H  L  V  L  A  C  S  R  W  R  R  L  K  V  E  V  L  T  V  Q  E  L  L  L  E  M  A  L  D  S  Q  Q  I  L  N  W  S  K  L  S  T  R  E  N  T  L  L  P  S  Q  R  S  S  K  A  L  L  D  C  F  T  T  N  S  C  P  I  A  F  C  C  P  F  F  F  P  L  C  L  V  Y  S  C  F  K  L  H  F  Y  Y  K  K  T  I  S  D  Y  Y  L  L  Y  Q  H  I  Y  I  G  S  V  S  I  T  V  Y  R  G  C  L  H  V  L  *  I  I  L  N  F  F  F  L  I  S  *  S  M  A  T  A  T  I  P  L  S  L  S  L  P  T  P  Q  L  C  Y  S  M  S  I  *  *  E  D  F  C  D  P  I  P  I  S  W  L  K  L  Q </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02HBa0323A14.3" strand="+"/>
                <serials PGL_serial="13" AGS_serial="2" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="123890" stop="123906"/>
                    <exon start="124353" stop="124613"/>
                    <exon start="124714" stop="124945"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>507</number_coding_nucleotides>
                  <number_encoded_amino_acids>169</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>KPNYGRYQKLFQKRFLERWVDQQKRCPIITPNDLAEADGFVFGFPTRFGMMAAQFKAFLDATGGLWRTQQLAGKPAGLFYSTGSQGGGQETTALTAITQLVHHGMIFVPIGYTFGAGMFEMEKIKGGSPYGAGTFAGDGSRQPTDLELEQAFHQGKHIATIAKKLKGSA*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
  </PGL_module>
</GTH_output>
<!--
$ general statistics:
$ 108 chains have been computed
$ 
$ memory statistics:
$ 115296 bytes spliced alignments in total
$ 52 spliced alignments have been stored
$ 2217 bytes was the average size of a spliced alignment
$ 20864 bytes predicted gene locations in total
$ 13 predicted gene locations have been stored
$ 1604 bytes was the average size of a predicted gene location
$ 1 megabytes was the average size of the backtrace matrix
$ 123 backtrace matrices have been allocated
$ 
$ date finished: 2009-12-01 10:25:40
-->
