<?xml version="1.0" encoding="ISO-8859-1"?>
<GTH_output xmlns="http://www.genomethreader.org/GTH_output/" GTH_XML_version="1.1">
  <header xmlns="http://www.genomethreader.org/GTH_output/header/">
    <source program="GenomeThreader" version="0.9.54" build_date="2006-07-28 11:55:15" run_date="2009-12-01 10:34:54"/>
    <gDNA_template_files>
      <temp_name>/tmp/bac-submission-temp-C02HBa0332B10-uFkrv/GenomeThreader_SGN_U_tomato/un_xed_seqs</temp_name>
    </gDNA_template_files>
    <reference_files>
      <file ref_name="/tmp/bac-submission-temp-C02HBa0332B10-uFkrv/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_U_tomato" type="ESTcDNA"/>
    </reference_files>
    <splice_site_parameters parameter_type="Bayesian" species="arabidopsis"/>
    <parameters>
      <parameter name="bssmfile" value="arabidopsis"/>
      <parameter name="scorematrixfile" value="BLOSUM62"/>
      <parameter name="searchmode" value="forward=True,reverse=True)"/>
      <parameter name="translationtable" value="1"/>
      <parameter name="frompos" value="0"/>
      <parameter name="topos" value="0"/>
      <parameter name="width" value="0"/>
      <parameter name="verbose" value="False"/>
      <parameter name="skipalignmentout" value="False"/>
      <parameter name="showintronmaxlen" value="120"/>
      <parameter name="minorflen" value="64"/>
      <parameter name="showseqnums" value="False"/>
      <parameter name="gs2out" value="False"/>
      <parameter name="maskpolyatails" value="False"/>
      <parameter name="noautoindex" value="False"/>
      <parameter name="minmatchlen" value="20"/>
      <parameter name="seedlength" value="16"/>
      <parameter name="exdrop" value="2"/>
      <parameter name="online" value="False"/>
      <parameter name="inverse" value="False"/>
      <parameter name="exact" value="False"/>
      <parameter name="chainwf" value="0.500000"/>
      <parameter name="gcmaxgapwidth" value="1000000"/>
      <parameter name="gcmincoverage" value="50"/>
      <parameter name="introncutout" value="False"/>
      <parameter name="autointroncutout" value="0"/>
      <parameter name="icinitialdelta" value="50"/>
      <parameter name="iciterations" value="2"/>
      <parameter name="icdeltaincrease" value="50"/>
      <parameter name="icminremintronlen" value="10"/>
      <parameter name="nou12intronmodel" value="False"/>
      <parameter name="u12donorprob" value="0.990000"/>
      <parameter name="u12donorprob1mism" value="0.900000"/>
      <parameter name="probies" value="0.500000"/>
      <parameter name="probdelgen" value="0.030000"/>
      <parameter name="identityweight" value="2.000000"/>
      <parameter name="mismatchweight" value="-2.000000"/>
      <parameter name="undetcharweight" value="0.000000"/>
      <parameter name="deletionweight" value="-4.000000"/>
      <parameter name="dpminexonlen" value="5"/>
      <parameter name="dpminintronlen" value="50"/>
      <parameter name="shortexonpenal" value="100"/>
      <parameter name="shortintronpenal" value="100"/>
      <parameter name="wzerotransition" value="80"/>
      <parameter name="wdecreasedoutput" value="80"/>
      <parameter name="leadcutoffsmode" value="RELAXED"/>
      <parameter name="termcutoffsmode" value="STRICT"/>
      <parameter name="cutoffsminexonlen" value="5"/>
      <parameter name="scoreminexonlen" value="50"/>
      <parameter name="minaveragessp" value="0.500000"/>
      <parameter name="minalignmentscore" value="0.900000"/>
      <parameter name="maxalignmentscore" value="1.000000"/>
      <parameter name="mincoverage" value="0.900000"/>
      <parameter name="maxcoverage" value="100.000000"/>
      <parameter name="intermediate" value="False"/>
      <parameter name="sortags" value="False"/>
      <parameter name="sortagswf" value="1.000000"/>
      <parameter name="first" value="0"/>
      <parameter name="exondistri" value="False"/>
      <parameter name="introndistri" value="False"/>
      <parameter name="refseqcovdistri" value="False"/>
    </parameters>
    <overall_reference_type>ESTcDNA</overall_reference_type>
  </header>
  <alignment_module>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0332B10-uFkrv/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_U_tomato" ref_id="SGN-U595650" ref_strand="+" ref_description="SGN-U595650 Tomato 200607#2 [1 ESTs aligned] (*GB) gi|157347419|emb|CAO18056.1| (e_value=6e-84) unnamed; (*ATH) AT5G02780.1 (e_value=5e-78) | Symbol: None | In2-1 protein, putative, similar to In2-1 (Zea mays) EMBL:X58573 | chr5:630955-632581 FORWARD | Aliases: F9G14.90, F9G14_90; (*SWP) sp|P49248|IN21_MAIZE (e_value=7e-62) Protein IN2-1 OS=Zea mays GN=IN2-1; ">
      <seq>gggcgaatggcggccaaatcggccgaattgagaatcttctaagcccttttccattcaagaaaaaacaattatcaatggcttccccgcgtgtacaagaccttctaccaccatctctagattctacttcccaacccccatcactcttcgatggaacaaccaggttgtatatcaattatcaatgcccctattctcaacgtgtgtggattaccaggaatgttaagggtttgcaagacatgatcaagttagttccaattgatcttcaaaataggcctgattggtacaaggaaaatgtttaccccaaaaataaggtgccttccctagagcacaacaacaaagtgacgggagagagtttggttcttgttaaatatgttgattgcaactttgaaggaccatcattcttgccagatgaccaggaaaagcgaaaatttgctgaagaattgatagcttatagtgacactacattcgtcccagaagtatacagatcattcgcaaaagatgcacggacactggctggtgcacaatttgattacctagaaaaagctctccacaaatttgacgatgggcctttcttccttggtcaattcagtcaggttgacataatatatgctccatttgtcgaaaggttccatgtttttatgccagaggggtttaactatgacatcacaaccgggaggcctaagctagccaagtggactgaggaaatgaacaatcttgacgggtacaagcaaacaaaagtcttggaacaagagaaaatgattgagtactacaagaatcgctttctgccgaaagcttgaaacttcaaaatgcattaacaatctcagatgaaagttacataggcttggactttggtatcaaatatataatggagttctataataatatgcaccaacaataaatttgctcta</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0332B10-uFkrv/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C02HBa0332B10.1" temp_strand="-" temp_description="C02HBa0332B10.1  CU459018.10 htgs_phase:3 submitted_to_sgn_as:C04HBa0332B10 sequenced_by:sanger upload_account_name:uk">
        <position start="37677" stop="33146"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="37371" g_stop="37319" g_length="53"/>
          <reference_exon_boundary r_type="cDNA" r_start="33" r_stop="85" r_length="53" r_score="0.906"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="37318" i_stop="36506" i_length="813">
            <donor d_prob="0.991" d_score="0.90"/>
            <acceptor a_prob="0.000" a_score="0.90"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="36505" g_stop="36431" g_length="75"/>
          <reference_exon_boundary r_type="cDNA" r_start="86" r_stop="160" r_length="75" r_score="0.920"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="36430" i_stop="36309" i_length="122">
            <donor d_prob="1.000" d_score="0.96"/>
            <acceptor a_prob="0.823" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="36308" g_stop="36248" g_length="61"/>
          <reference_exon_boundary r_type="cDNA" r_start="161" r_stop="221" r_length="61" r_score="0.951"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="36247" i_stop="35469" i_length="779">
            <donor d_prob="0.982" d_score="0.96"/>
            <acceptor a_prob="0.999" a_score="0.90"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="35468" g_stop="35382" g_length="87"/>
          <reference_exon_boundary r_type="cDNA" r_start="222" r_stop="308" r_length="87" r_score="0.920"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="35381" i_stop="35074" i_length="308">
            <donor d_prob="0.999" d_score="0.88"/>
            <acceptor a_prob="0.981" a_score="0.90"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="35073" g_stop="34975" g_length="99"/>
          <reference_exon_boundary r_type="cDNA" r_start="309" r_stop="407" r_length="99" r_score="0.909"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="34974" i_stop="34881" i_length="94">
            <donor d_prob="0.674" d_score="0.92"/>
            <acceptor a_prob="0.991" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="34880" g_stop="34775" g_length="106"/>
          <reference_exon_boundary r_type="cDNA" r_start="408" r_stop="513" r_length="106" r_score="0.962"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="34774" i_stop="34684" i_length="91">
            <donor d_prob="0.986" d_score="0.92"/>
            <acceptor a_prob="0.984" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="34683" g_stop="34607" g_length="77"/>
          <reference_exon_boundary r_type="cDNA" r_start="514" r_stop="590" r_length="77" r_score="0.987"/>
        </exon>
        <intron i_serial="7">
          <gDNA_intron_boundary i_start="34606" i_stop="34436" i_length="171">
            <donor d_prob="0.998" d_score="0.98"/>
            <acceptor a_prob="0.201" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="8">
          <gDNA_exon_boundary g_start="34435" g_stop="34328" g_length="108"/>
          <reference_exon_boundary r_type="cDNA" r_start="591" r_stop="698" r_length="108" r_score="0.954"/>
        </exon>
        <intron i_serial="8">
          <gDNA_intron_boundary i_start="34327" i_stop="33775" i_length="553">
            <donor d_prob="0.999" d_score="0.96"/>
            <acceptor a_prob="0.992" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="9">
          <gDNA_exon_boundary g_start="33774" g_stop="33688" g_length="87"/>
          <reference_exon_boundary r_type="cDNA" r_start="699" r_stop="785" r_length="87" r_score="0.977"/>
        </exon>
        <intron i_serial="9">
          <gDNA_intron_boundary i_start="33687" i_stop="33566" i_length="122">
            <donor d_prob="0.934" d_score="0.98"/>
            <acceptor a_prob="0.962" a_score="0.92"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="10">
          <gDNA_exon_boundary g_start="33565" g_stop="33446" g_length="120"/>
          <reference_exon_boundary r_type="cDNA" r_start="786" r_stop="905" r_length="120" r_score="0.900"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0332B10.1" gen_strand="-" ref_id="SGN-U595650" ref_strand="+">
        <total_alignment_score>0.938</total_alignment_score>
        <cumulative_length_of_scored_exons>873</cumulative_length_of_scored_exons>
        <coverage percentage="0.965" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0332B10.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-U595650" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="37371" e_stop="37319"/>
          <exon e_start="36505" e_stop="36431"/>
          <exon e_start="36308" e_stop="36248"/>
          <exon e_start="35468" e_stop="35382"/>
          <exon e_start="35073" e_stop="34975"/>
          <exon e_start="34880" e_stop="34775"/>
          <exon e_start="34683" e_stop="34607"/>
          <exon e_start="34435" e_stop="34328"/>
          <exon e_start="33774" e_stop="33688"/>
          <exon e_start="33565" e_stop="33446"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AATCTTCTAAGTCCACTTCCATTCAATAAAAAACAATAATCAATGGCTTCCCCGTAAGTCTTCATTTGCTTAAGTTTTTGTTAATTGTTAATCAAATGTATTTAATTTGTTCAAAATAGCTAGTAATTAACATTAATCATTTAAAGAAGTATCGATTAAGGGATTGAGTTATGTTCGAGGTCCATTTGTTTCTTTGAATGTTGTATAGGGTAACGAGGGTTCTTTGTTATGAACTCCAGATTCAAAAGAAAAGTATCTAAAGCAAGATTTCATGAAAAATAAAACATCAAAATAACAAGATACAATATAAGTACAACAATAGATAGTGGTTCCCGTATAAAATTCCCTTTGTGGGGGTCTGACCCCTACAAGTTAGCAGAGAAGGGAGAGGAAATGGATCTTGACGAATCGTCATAATTAGTGTAAAAGTCCTTATATCGGATGCCTTATGAAATTGTCCATGTTTTTTTATGTCTAGCTTTAGTTTTGAGTGATCTACTATTGAATGGTCTTATGAGGAGTTGAGTTAGCTACAAAGTTAATTTCTTTATCCGTAGGATATTTCAGTTGAGTAACTTTTATATGTAATGAAGAAGATGAAGTGTTACCTAGTAATGGTTGTATGGTTGTTGTTGGTGGTGGTCGGAGTTATCTCTGGGAACTAGTTGATTGGCCATTAAAAGAAAAGGAAAAAAGATGATAAAGTGGGATGTGAGGTTTGGGGTTTGTGTGTGTGTATGTGATTCAACAAAGCTATTTGTTTTAAATATAGGATAAATGGTTGTACATGTATGTTGTATGAAAATTGTATATTTTAGTTTTCTTTTGATATGGATGTTCATGGGGATATTCTTCTATTCAGATAGGAGTGTAAAACACCTTTTACCACCATCTCTGGATTCTACTTCCCAACCCCCATCACTCTTCGATGGAACTACCAGGTTTGAATAAATATTTTCTCTTATTTCTTTGTCTTCGTTATGAATAATGTGTTCTTTCTCATCATTGCGATTTTATTTCTCCGACTGAAGATTGTGATCCGAGTTGATTGTGTTGTCTGAAGGTTGTATATGAATTATCAATGCCCCTATTCTCAACATGTGTGGATTACAAGGAATGTTAAGGTTTGCCTTTATACCACTTCCTCCAATCTAATTTATCGAGCTTTTCTCTTAGTAGATTGTTCTTTAAACAAGGAAGACTTTCTATATTTAAAGACTCTTTAAACTTGAAGATACCATTTTACTCATAATTTCATATCTTTAAAGCCATAAAAATGTCATGACATGTATAAGACCAAATGTCGAAAGATAGTTTTGATATAGTTTCATTTCTTTTCAAATTTCATGTCCAGTGAAATGCTGCCACGTAAAATAAAAAAGAGGGAGTATTTCTAAATTTTGTTTACGTATTTACAAGTACACTACGTGCAACAAGAAGAAGCCCTTTTACTAGGTGTAGAAAAGACTAGTGCGCAACGATTGATGAAAAGCAGCAACTTCTTAGAATTTAGATAGTGTTGGAACCCTTTACAAGGGGTTGTTTGCTGCTCGACCGGAGAGAAGAAATTCTCGCGAATAGACATAAGACTTCAACTCATCGTATAAAACTCTTATCTACGAAAAACCATGGGTCTTCTCTTGAATTTTAATATTCGTTAAAATTTTGATGATTTTTAATTTATATATTCACATTCTATGTTAAAAATATTCGGTTTGGATTAGCCCATAGCTCAAAAGTTCTATACTCATCAGAAAGGAAGTGCTACGAATTAGAATTGTTAATTTTGTTTATGTCGTTAGTTATTTTAATTTTTGGAAGTAATTTCTATTATTGTTGAAATTAATCAGCCCATGTATTCTTATACCTGTCTAGATAAACTTTTTAACATTTTGAATTGCAGGGTTTGCAAGACATGATCAAGTTAGTTCCAATTAATCAACAGAACAGGCCTGATTGGTACAAGGAAAAAGTTTATCCCAAAAATAAGGTAATTTTCGACAATACCAACTTTAATTTTTAAAACCCAATTCACTTGTATTTGAAATCTTTAGCCAGTACTTTGACAGAGGAATTTGGCCTTGCTGTAAATTGTATGAAAACTCCTGAAGAAAATGTCCATGAATTTTTGGGAAAAGGATTTCTCTTTCTCTTTGAATTCAATGACTATTGACAAAGCTAGTGCATACATGTTCAAGTCTTATCTTTCATATGATTGATGAAAGTGAATTTAATTCTTTAGGAGAGAATGCATCTCATTTTACGTGAAGAGTTATATATATTTTCAACTCTTCGCAGGTGCCTTCCCTAAAGCACAACAACAAGGTGATCAGAGAGAGTTTGGTTCTGGTTAAATATGTTGATTGTAACTTTGAAGGACCATCATTCATGCCGGATGTAAGATGTGAAATTTCAGTATGATCCTTTTTGTGTAGGAAAATCTTAAGATGTAAATTGATTAAAAAAAATAAATATTCGCCAACTAATGTAGGACCAGGAAAAGCGAAAATTTGCTGAAGAATTGATAGCTTATAGTGACACTACATTCGTCCCAGAAGTATACTGATCTTTCGCAAATGATGCACGGAAACTGGCTGGTGAGAATTGATCATGTGTTTGTTGAAACTCATCATGTTTTGTTTGTTAAATGTTTCTTATGTAAGTTAACAGTTTTAACACTTGTACTAGGTGCACAATTTGATTACCTAGAAAAAGCTCTCCACAAATTCGACGATGGGCCTTTCTTCCTTGGTCAATTCAGTCAGGTCATTACTATCTTTCATTTTCTTTTCCTCTCCAATAATGTTCCATGTGAGATGGTATCATTTTCAAAAAACATACTCAACAAGTAGTACAAAGTAGTGTGGTTGTACTTTTTTCCTAGAATTTCAAACTTCATAGAAGTTTTTGATGATATGAAAACTCGGTTGTGCTAGGTTGACATAATATATGCTCCATTTATCTAAAGTTTCCATGTTTTTATGCCAGAGGGGTTTAACTATGACATCACAACCGAGAGGCCTAAGCTAGCCAAGTGGATTGAGGTATGACTTATATTCGATTTGGAGTGTAAAGTATGATTAATATATTTATACTATATAAGAAATTTTATTATTCTTTAGATTAATTTAGTTATATTAGATGTTGTATACTAGAATGTTCATCACAATAGAAAAGGATCCATGACTTTCCGTTGGAAAACATAGAGACTAAGGCTTGTTAAAATTGCATTTCTTTCCTTTGGTAATGGCGTAAAATTCAAGGCTAGTTGGTTGGTTCATTTTTCATGTATAATTTATGTACATTATAATGAAGGTAAGCCTTGAAAAAACAATAAAGTTTTCTTTGTGTTTCTTGTAAGTCTTGCAGACTCTTCTCTTCCGATGCACCCATTTACATATTTTAAGAGTCTGATCAACATAACACGTTACATATATAAGTTCAAGCCGTGGAATCAACCACCGGTATTTTTATTAGGGTGTCTTCATACATTACACCCCTTTGGGGTGCAGTATTATTCCTAATTCTACAGCGTTAAAGTGGAATGCTTCCTCATCATTGTTCTATTTTATTTGTGCTGAATTAATCATCTCATAGGAAATGAACAATCTTGACGGATACAAGCAAACAAAAGTCTTGGAACAAGAGAAAATGGTTGAGTACTACAAGAATCGCTTTCTGCCGGTACCCACTTCGCAAACAATAAAGCAAACAATAAATACATTTATTTATTTTTCTTTTTTGGTTTGAGAACCGTACATATAGCTACTGACAATTCACTATATATGTGTTTTCTCTTTTTACAGAAAGCTTGAAACTTCAAAAATGCATTGTCAATCTCAGATGAAAGTTACAGGGGCTAGGACTTTGGTATGAAATATGTTATGGAGTTCTATAATAATATGCACCAGCAAT-AATTTGCTCTA</genome_strand>
        <mrna_strand>AATCTTCTAAGCCCTTTTCCATTCAAGAAAAAACAATTATCAATGGCTTCCCC.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCGTGTACAAGACCTTCTACCACCATCTCTAGATTCTACTTCCCAACCCCCATCACTCTTCGATGGAACAACCAG..........................................................................................................................GTTGTATATCAATTATCAATGCCCCTATTCTCAACGTGTGTGGATTACCAGGAATGTTAAG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGTTTGCAAGACATGATCAAGTTAGTTCCAATTGATCTTCAAAATAGGCCTGATTGGTACAAGGAAAATGTTTACCCCAAAAATAAG....................................................................................................................................................................................................................................................................................................................GTGCCTTCCCTAGAGCACAACAACAAAGTGACGGGAGAGAGTTTGGTTCTTGTTAAATATGTTGATTGCAACTTTGAAGGACCATCATTCTTGCCAGAT..............................................................................................GACCAGGAAAAGCGAAAATTTGCTGAAGAATTGATAGCTTATAGTGACACTACATTCGTCCCAGAAGTATACAGATCATTCGCAAAAGATGCACGGACACTGGCTG...........................................................................................GTGCACAATTTGATTACCTAGAAAAAGCTCTCCACAAATTTGACGATGGGCCTTTCTTCCTTGGTCAATTCAGTCAG...........................................................................................................................................................................GTTGACATAATATATGCTCCATTTGTCGAAAGGTTCCATGTTTTTATGCCAGAGGGGTTTAACTATGACATCACAACCGGGAGGCCTAAGCTAGCCAAGTGGACTGAG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAAATGAACAATCTTGACGGGTACAAGCAAACAAAAGTCTTGGAACAAGAGAAAATGATTGAGTACTACAAGAATCGCTTTCTGCCG..........................................................................................................................AAAGCTTGAAACTTC-AAAATGCATTAACAATCTCAGATGAAAGTTACATAGGCTTGGACTTTGGTATCAAATATATAATGGAGTTCTATAATAATATGCACCAACAATAAATTTGCTCTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0332B10-uFkrv/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_U_tomato" ref_id="SGN-U602621" ref_strand="+" ref_description="SGN-U602621 Tomato 200607#2 [1 ESTs aligned] ">
      <seq>ttattttcactgcattaagtttgctatacaactcttaggatcgcgataggactttcttagcttgtaacataggctcagggtcaggtagggtatatttaggtatactttagtgactttttgccctccttgaaatatcggctaaacataccattttctatcattttatttgcccagtttctcatattttttcaccttgttattttcccttctttcttcatttttgtaagtgactcttcttttcttgcttgtatttcttgtgtgtgtgtgtgtgtgtgtgtgtgtgtatatatatatatatatatatatatatatattaacttttctttcaactaattcttgagtcaatttacttttattctttctctctctttgttctttcaaccccactttcaagagcattcctcataataaccactctcaactcatggctttgccatgagtcaaagtattcaatacccaaagttgggtcagagccataaaaagggttgtttactacattagccactctcaacttatgcttttggcataatctgaggtgcacatgtccaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0332B10-uFkrv/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C02HBa0332B10.1" temp_strand="+" temp_description="C02HBa0332B10.1  CU459018.10 htgs_phase:3 submitted_to_sgn_as:C04HBa0332B10 sequenced_by:sanger upload_account_name:uk">
        <position start="40123" stop="41267"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="40423" g_stop="40967" g_length="545"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="549" r_length="549" r_score="0.908"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0332B10.1" gen_strand="+" ref_id="SGN-U602621" ref_strand="+">
        <total_alignment_score>0.908</total_alignment_score>
        <cumulative_length_of_scored_exons>545</cumulative_length_of_scored_exons>
        <coverage percentage="0.993" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0332B10.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-U602621" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="40423" e_stop="40967"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTATTTTCACTACTTTAAGTTCGCTATACAACTCTTAGGATCACGATAGGACTTTCTTAGCTTGTAACATAGGCTCAGAGTCAGGTATGGTATATTTAGGTATACTTTAGTGACTTTTTGCCCTCCTTGACATATCGGCTAAACATACCATTTTCTATCATTTTATTTCCCCAATTTCTCATATTCTTTCACCTTGCTATTTTCCCTTCTTTCTTCATTTGTGTAAGTGATTCTCTTCTTTTCTTGCTTGTATTTC---T-T-T-TGTATGTGTCTATATATATATATATATATATATATATATATATATATATATT-ACATTTCTTTCAACTAATTCTTGAGTCACTTTACTTTTGTTCTTTCTCTCTCTTTGTTCTTTCAACCCCACTTTCCAGAGCATTCCTCATAATAGCCACCCTCAACTCATGGTTTTGCCATGAGTCAAAGTACACAATACCCAAAGTTGGGTCAGGGCCATAAAAAAGGGTTGTTTACTCCATTAGCCACCCTCAACTTATGCTTTTGGCATAAGCTGAGGTGCACATATCCAA</genome_strand>
        <mrna_strand>TTATTTTCACTGCATTAAGTTTGCTATACAACTCTTAGGATCGCGATAGGACTTTCTTAGCTTGTAACATAGGCTCAGGGTCAGGTAGGGTATATTTAGGTATACTTTAGTGACTTTTTGCCCTCCTTGAAATATCGGCTAAACATACCATTTTCTATCATTTTATTTGCCCAGTTTCTCATATTTTTTCACCTTGTTATTTTCCCTTCTTTCTTCATTTTTGTAAGTGA--CTCTTCTTTTCTTGCTTGTATTTCTTGTGTGTGTGTGTGTGTGTGTGTGTGTGTATATATATATATATATATATATATATATATTAACTTTTCTTTCAACTAATTCTTGAGTCAATTTACTTTTATTCTTTCTCTCTCTTTGTTCTTTCAACCCCACTTTCAAGAGCATTCCTCATAATAACCACTCTCAACTCATGGCTTTGCCATGAGTCAAAGTATTCAATACCCAAAGTTGGGTCAGAGCCAT-AAAAAGGGTTGTTTACTACATTAGCCACTCTCAACTTATGCTTTTGGCATAATCTGAGGTGCACATGTCCAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0332B10-uFkrv/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_U_tomato" ref_id="SGN-U581803" ref_strand="+" ref_description="SGN-U581803 Tomato 200607#2 [12 ESTs aligned] (*GB) gi|157340719|emb|CAO47524.1| (e_value=3e-125) unnamed; (*ATH) AT2G17220.2 (e_value=6e-123) | Symbol: None | protein kinase, putative, similar to protein kinase APK1A (Arabidopsis thaliana) Swiss-Prot:Q06548 | chr2:7494757-7497258 REVERSE | Aliases: None; (*SWP) sp|P27450|CX32_ARATH (e_value=1e-112) Probable serine/threonine-protein kinase Cx32, chloroplastic OS=Arabidopsis thaliana GN=At4g35600; ">
      <seq>gagattgtcattgacaccatcacataaacttcaactatcagctaaattaggaaaccacactgtaaaatcccagcaatttacagttgaaaattttggcgcattatatcttataatataatatgaaggaatcaacaacaatattagtagcttttccctaaattccaccgctttttgtcaaaagtttcaactttgctctaaaaatcaagatttctccttttgaatgatggtagcaatttagtattgagctgagaataagaagaaagtgtaaaaattgatggggaattgttttggatcagagaatcttgatcctaatcctagtaacaaaagcaactcatcaactagaccttctaccccagatacatcaaagaactacagtggtggtgttggattttcgactagtagtagtactgggcgtagccgtttttcagcagctgcaagcgaggattcatgttcgaatggagaaatattgcctactccaaatttgaagacttacagtttttctgatctgaaggctgccacaagaaatttcaagtctgatacagttttgggggtgggaggctttgggactgtatttaaaggatgggtcgatgagaagacgcttactccaactaaagttggaactgggatggttgttgccatcaagaagttgaactcagagagcatgcagggatttgaagagtggcaggcagaagttaacttcttaggaaggctttcacacccaaaccttgttaaattgttgggatattgttgggaagacaaggaactgttacttgtatatgaattcatgccaaagggaagcttggagaaccatcttttcagaaggagcacagctattgaaccactttcttgggagttgcggctcaaaattgccataggagcggcacgaggtttagcttttctacattcttcagaaaagcagatcatttacagagatttcaaggcctccaatatacttctcgatgggagttaccatgcaaagttatccgattttggcttagctaaagttgggccttcagctgggaactcacatgtgactactcgtatcatgggaacatatggttatgctgctcctgaatacattgcaacaggtcatctgtatgtaaaaagtgatgtatatggatttggtgttgtcttgcttgagctgttaacaggcttacgagcacttgacacaaaacgacctggcggacagcataatttggtggactggatgaaaccgatgctttctaacaaaaggaagctgaagtccattatggacgcccgaatggaaggccaatatagttcaaaggcagcaatacttactgctcagcttactataaaatgcctagaaggagaacctaagaagaggccttctatgaaagaagtagtggaagtattggaacaagttgaattgataaaggagaaatcaaaaccttccaaaagcaaatccgagtcttcatctcatcgatacaagcagtcaccgagaagttatccttctccacgtggtgcaagcaaccatggatccggagccggatctggaagatgacaggtacaactggaaaggcaaacgcgagctgctgaaaaatgagtttgtttatacatttaattgtattgaatttgttgtagtccaatttggtttaatcattgttttggattacaaattttgtaaaattgtctgtcacatctgtactccatgggaataaatgtatttctatcgtttataagaaaactgatttcatttgtggaaggtatgattacagctaagattaacaggcagtccagcctgttgaaatgtaaatttgtgtaagccc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0332B10-uFkrv/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C02HBa0332B10.1" temp_strand="-" temp_description="C02HBa0332B10.1  CU459018.10 htgs_phase:3 submitted_to_sgn_as:C04HBa0332B10 sequenced_by:sanger upload_account_name:uk">
        <position start="75337" stop="69228"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="75037" g_stop="74682" g_length="356"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="356" r_length="356" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="74681" i_stop="74311" i_length="371">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.988" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="74310" g_stop="73982" g_length="329"/>
          <reference_exon_boundary r_type="cDNA" r_start="357" r_stop="685" r_length="329" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="73981" i_stop="72478" i_length="1504">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.986" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="72477" g_stop="72342" g_length="136"/>
          <reference_exon_boundary r_type="cDNA" r_start="686" r_stop="821" r_length="136" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="72341" i_stop="72259" i_length="83">
            <donor d_prob="0.938" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="72258" g_stop="72116" g_length="143"/>
          <reference_exon_boundary r_type="cDNA" r_start="822" r_stop="964" r_length="143" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="72115" i_stop="70943" i_length="1173">
            <donor d_prob="0.898" d_score="1.00"/>
            <acceptor a_prob="0.975" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="70942" g_stop="70819" g_length="124"/>
          <reference_exon_boundary r_type="cDNA" r_start="965" r_stop="1088" r_length="124" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="70818" i_stop="70226" i_length="593">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.855" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="70225" g_stop="69527" g_length="699"/>
          <reference_exon_boundary r_type="cDNA" r_start="1089" r_stop="1787" r_length="699" r_score="0.999"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0332B10.1" gen_strand="-" ref_id="SGN-U581803" ref_strand="+">
        <total_alignment_score>0.999</total_alignment_score>
        <cumulative_length_of_scored_exons>1787</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0332B10.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-U581803" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="75037" e_stop="74682"/>
          <exon e_start="74310" e_stop="73982"/>
          <exon e_start="72477" e_stop="72342"/>
          <exon e_start="72258" e_stop="72116"/>
          <exon e_start="70942" e_stop="70819"/>
          <exon e_start="70225" e_stop="69527"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAGATTGTCATTGACACCATCACATAAACTTCAACTATCAGCTAAATTAGGAAACCACACTGTAAAATCCCAGCAATTTACAGTTGAAAATTTTGGCGCATTATATCTTATAATATAATATGAAGGAATCAACAACAATATTAGTAGCTTTTCCCTAAATTCCACCGCTTTTTGTCAAAAGTTTCAACTTTGCTCTAAAAATCAAGATTTCTCCTTTTGAATGATGGTAGCAATTTAGTATTGAGCTGAGAATAAGAAGAAAGTGTAAAAATTGATGGGGAATTGTTTTGGATCAGAGAATCTTGATCCTAATCCTAGTAACAAAAGCAACTCATCAACTAGACCTTCTACCCCAGGTACACACAAACATACTACCGTTTTCTCTTTGTAGGTTAAAAGGTTTGTTCTTTTTAGGAATGATTTTGTTCGAATTCCCAAATGGGGTTTTGCTTTTGCTATTTATGGGGAAAATTTTGGACTCTTTCTTGATTTTCTGTATGTCAAATATTCTACTCTTCTCTCTTTGTTGAGTCTATACTAAAGGACCCAAAATGGCTTCTGTTTCATTTTCTTGGCAATCAGAACTTTTGTTAGGACTAGTTGACCATAATTTAGAGGAGTAATTTATGTTGTTTGTAGTTTTTGGTAAAGCCCCTTTCAGATTTCATAGCTTTTAGCTTAATTGGGAGTAAAAAGACTAGATTTTTGGGATGTATTTTTTGTGCAGATACATCAAAGAACTACAGTGGTGGTGTTGGATTTTCGACTAGTAGTAGTACTGGGCGTAGCCGTTTTTCAGCAGCTGCAAGCGAGGATTCATGTTCGAATGGAGAAATATTGCCTACTCCAAATTTGAAGACTTACAGTTTTTCTGATCTGAAGGCTGCCACAAGAAATTTCAAGTCTGATACAGTTTTGGGGGTGGGAGGCTTTGGGACTGTATTTAAAGGATGGGTCGATGAGAAGACGCTTACTCCAACTAAAGTTGGAACTGGGATGGTTGTTGCCATCAAGAAGTTGAACTCAGAGAGCATGCAGGGATTTGAAGAGTGGCAGGTATGAGAACTTTTGATACAATTTATAGGCATTTATTCTTTGCAGAATGTTGGACCTTCTTGGTGGAAGAAGCCAATAGTTTGACCTTTTTTGTTGGAGAAAGATCTTTCATTACACAAACTAGGAAAATGCCCATCAATGCAAAATGCATAAGCTACCTTGTTGCTGATCATTCAGGGACAATTATGTGGCATTGGTTGTTAAATATGCTGAATAATTTGGGTATCCTGTTTTTGGTTAACTATTATGTATGAAACATTTTCAGTTTATGTTCGTTAGTCAAGTAAAACCTGTAGTTAGACAGGCAAGTCAATGATTAGACAGTGTCTCTGTAACAAACTAGGATTGCCTCTTACATGGCTGAACTCTTTGATGAAGTTGAATGAATAAACTACTAAAGTGATATAAAAATGTATGTATTGATACATCTTTATAGGGGATTCAATCTTGAAGCAGTTATTGATACAGTTTTCAAGCTGAAAACACAGATATTGATCTTGTTAGTTCACATTGTGTACTGATTATACACAATTACTTGCTGAATGTAAAGTCCTCTGTTGGTTTGATTTGAGTTCATATTTCTCCATTTACATCCCAACGATACAGATAAAAAGTATGAGCAAAACTTTTGTAGTTTGCATAGCTATCTATACACAGATTTGTGAAATAATTTCTCATCTTGTTAGATTTGAGCTAACAATATCATATAATGTGTCAAACTTCCTCTCTTACTCCTAATCACACACTTTGAGCAATGAGTACTTATCTGCTTCCTGTTATAATACTACTTTGGTTTTTGTTGTTGAAACAATTTCTAGCAACTTCAAGTTAACTTGTTGCTGAACAGATTTTCTGCAACTGTATAGTGGCCCAATATTTAATTGATGTCTACAGGTAATTGTAGTGTGCAGAGATATGAATAGTATAAGAGCTATCTGGCGATTTATATTGAAGGCCTCTCCAAAATTGTGGTGTCAGACTTAGCAAATTTTATATCAGATAGGTAGTTTGTTGAGTGGATGAGGAAGAATACAGCCTCTGAACATCCAACATCCAGCCAACTCAGGAAAAAAATGAACTATTATAAAAAATTGACCCATATTTGGAATATGATTCGAAAAAAGATCAAGGGTTTCCATATGTATTATTGTTGCGATCTATACTAAGCAAGTGTACGTGGTCGACAAGTATTATTCCTATGAAGATTTATAACTAACTTCAGACTAAATTAAGCTGTTACTAACATCAATTGTGTCAGCTGTCACGGCCATTCCTGAAGTTGCGATGGGTGTACCTTCCTCTTTTAGAGAGAGACGTACTGTTTAGTTATTTAGGTTTCTTATTTAGCTATCAGGAGCGTGTACTTGAACTTTTCAATATTCTTGTTTTGTTTATCAACTAACTTCTGAATTGCTAGTTCACTTTAGAACTTTATATTATTTGTCATATATAGACTATAGTTAGATGCTTTAGCTAACACTCCTAATCTTTCAATTAACTGCAGGCAGAAGTTAACTTCTTAGGAAGGCTTTCACACCCAAACCTTGTTAAATTGTTGGGATATTGTTGGGAAGACAAGGAACTGTTACTTGTATATGAATTCATGCCAAAGGGAAGCTTGGAGAACCATCTTTTCAGAAGTAAGAAGTTCTGTACTAGAGTTTCAACCGAAACAAGGTTAATAATGATATGATGCACTGATCTCTGTTATGTTGCTTTGCAGGGAGCACAGCTATTGAACCACTTTCTTGGGAGTTGCGGCTCAAAATTGCCATAGGAGCGGCACGAGGTTTAGCTTTTCTACATTCTTCAGAAAAGCAGATCATTTACAGAGATTTCAAGGCCTCCAATATACTTCTCGATGGGGTACAATCTTTTGACTTGCGATTCATTTGGTAGGCCAGTATTCTAAAACAATATAACAATAAGAGAATAATGACAAACAAAAGCTAGATTCAAGAGTCAGCTACTACATTGGTTGAACCAGTGGTGAAGACACCCTTTAGTAATGTGGGTAATCCGACACCGTTTTGCACAATTCTTTGTTAACAAGTTGACTAAATTTGTATATGTACAGTAGGTCGGTCCTACTTGTAAAGTATGCGAGGCAATTATATATTTTGGTACACAAAGTGATGTCTTAAAACTCACAATCCCAGACCTAAACCCACTCACAAACCGAATAGTTACTAACTGATCTCTCTTAAAATCATGCATATGCCATTGCCCCTAGGTTTTGGCCTAGTGCTAAGAGCATAGAGCAAGGTGTGTGTTAGGCGCACGTCATTCGTTCAAACCTTGTACTAGACAAAAGCTTGGTATGCTCAGTATTTGAGTGAAGGTAGAGGGGTACCCATCAAGCTTCGAACCATGCAGCACTGTTCCTTGGGAATTTCTTGATTATCAAAAATAAAATAATATCCTGCATATGCAAATTACTTTGACATATACTTGTTTCATATCCAATGCACTTGATACATCTTGTTATTAGCTTGTAATTTGGGTCAGTGGTAGTTTGATTGCCATTGTTTGTTTTTATTTTCTCTGTTTGGAGTACAGGTATGTGACTCTACTATAGCTTAGTGCATATCCCTTACGTTTCCTTTATCTTTTTTTACTTACTTTCACATAATTGAAACATGAGCAAGACCTAGAATCGGCTGGATTTCTGAAATTAATTATCTATTATATGTTGGTCTTTGGAGGATTCTCTTTCCATATGGTTCCCCAGTATTTCTCAAGGAGGCTGTGAGTTTATGTGATGATATGAGTAATAATACTGAACTTGAACGTTTTGTTCTGTTTAATATCATCAAAATCCCTTATCTGATCTCATATTGTTTTTCCTTTTCCGATGGAACTAAATGAAAGTACAAGTACGTTTTTCTTCAATAGATTTTCCTCCTTTCCAACTTTTATGTACATCTGCATAAGGGCCAAATTTTATGTTTTTCTTCAATAGATTTTCCTCCTTTCCAACTTTTATGTACATCTGCATAAGGGCCAAATTTTGAAGGTCTTCTATTTTTCTGTTTGCAGAGTTACCATGCAAAGTTATCCGATTTTGGCTTAGCTAAAGTTGGGCCTTCAGCTGGGAACTCACATGTGACTACTCGTATCATGGGAACATATGGTTATGCTGCTCCTGAATACATTGCAACAGGTGAGCAATAATTTCGAGCTGTTGTCCCATTACATTTTAAGATATACATATCAAATTATGAGTGTAATTCCAGCCATTTTATCTCAAAAAGTGATTCCATATTCTGGATATTCAATGGGCGAGACTCGCAAGTGACTTGAAGGTTTAGCTGTTTGAACTCGAGGTTGCTTGTTTTTCAATAAGAAAATAACCCGTAGTGCTTTATGAAACTAATTGCATTCGCTTGTTTGATAGATTTGTCTCAACTTTCAATTCGAAGTGGCTCTCTGTGTGCAACAAATATCACTTGCAGAAACTAGAACTTCATTATTTCTTCATAAAATTTCATTGTAGTATCTATGTTTTCAATGTCTAACATTTTTCACGCTCTCCCGCATTGGCTCGGATTCAGTACCTAAATAGATTTGCACATCTATTAAACCACCAGTAATATTTTGATCACCATTATGCTATATGCATTAAATTGCATAAATATATGTACATCTGGTTTGGCCGTGTGCAGAGTAAGCGAGACTACCTTGAAAGAGAAAGCTCGATCCCAGAAACATTTGCAGTATAATGTGTTAATCCAAGGATTCTTGTCATGTCAACAGGTCATCTGTATGTAAAAAGTGATGTATATGGATTTGGTGTTGTCTTGCTTGAGCTGTTAACAGGCTTACGAGCACTTGACACAAAACGACCTGGCGGACAGCATAATTTGGTGGACTGGATGAAACCGATGCTTTCTAACAAAAGGAAGCTGAAGTCCATTATGGACGCCCGAATGGAAGGCCAATATAGTTCAAAGGCAGCAATACTTACTGCTCAGCTTACTATAAAATGCCTAGAAGGAGAACCTAAGAAGAGGCCTTCTATGAAAGAAGTAGTGGAAGTATTGGAACAAGTTGAATTGATAAAGGAGAAATCAAAACCTTCCAAAAGCAAATCCGAGTCTTCATCTCATCGATACAAGCAGTCACCGAGAAGTTATCCTTCTCCACGTGGTGCAAGCAACCATGGATCCGGAGCCGGATCTGGAAGATGACAGGTACAACTGGAAAGGCAAACGCGAGCTGCTGAAAAATGAGTTTGTTTATACATTTAATTGTATTGAATTTGTTGTAGTCCAATTTGGTTTAATCATTGTTTTGGATTACAAATTTTGTAAAATTGTCTGTCACATCTGTACTCCATGGGAATAAATGTATTTCTATCGTTTATAAGAAAACTGATTTCATTTGTGGAAGGTATGATTACAGCTAAGATTAACAGGCAGTCCAGCCTGTTGAAATGTAAATTTGTGTAAGCCA</genome_strand>
        <mrna_strand>GAGATTGTCATTGACACCATCACATAAACTTCAACTATCAGCTAAATTAGGAAACCACACTGTAAAATCCCAGCAATTTACAGTTGAAAATTTTGGCGCATTATATCTTATAATATAATATGAAGGAATCAACAACAATATTAGTAGCTTTTCCCTAAATTCCACCGCTTTTTGTCAAAAGTTTCAACTTTGCTCTAAAAATCAAGATTTCTCCTTTTGAATGATGGTAGCAATTTAGTATTGAGCTGAGAATAAGAAGAAAGTGTAAAAATTGATGGGGAATTGTTTTGGATCAGAGAATCTTGATCCTAATCCTAGTAACAAAAGCAACTCATCAACTAGACCTTCTACCCCAG...................................................................................................................................................................................................................................................................................................................................................................................ATACATCAAAGAACTACAGTGGTGGTGTTGGATTTTCGACTAGTAGTAGTACTGGGCGTAGCCGTTTTTCAGCAGCTGCAAGCGAGGATTCATGTTCGAATGGAGAAATATTGCCTACTCCAAATTTGAAGACTTACAGTTTTTCTGATCTGAAGGCTGCCACAAGAAATTTCAAGTCTGATACAGTTTTGGGGGTGGGAGGCTTTGGGACTGTATTTAAAGGATGGGTCGATGAGAAGACGCTTACTCCAACTAAAGTTGGAACTGGGATGGTTGTTGCCATCAAGAAGTTGAACTCAGAGAGCATGCAGGGATTTGAAGAGTGGCAG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCAGAAGTTAACTTCTTAGGAAGGCTTTCACACCCAAACCTTGTTAAATTGTTGGGATATTGTTGGGAAGACAAGGAACTGTTACTTGTATATGAATTCATGCCAAAGGGAAGCTTGGAGAACCATCTTTTCAGAA...................................................................................GGAGCACAGCTATTGAACCACTTTCTTGGGAGTTGCGGCTCAAAATTGCCATAGGAGCGGCACGAGGTTTAGCTTTTCTACATTCTTCAGAAAAGCAGATCATTTACAGAGATTTCAAGGCCTCCAATATACTTCTCGATGGG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGTTACCATGCAAAGTTATCCGATTTTGGCTTAGCTAAAGTTGGGCCTTCAGCTGGGAACTCACATGTGACTACTCGTATCATGGGAACATATGGTTATGCTGCTCCTGAATACATTGCAACAG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTCATCTGTATGTAAAAAGTGATGTATATGGATTTGGTGTTGTCTTGCTTGAGCTGTTAACAGGCTTACGAGCACTTGACACAAAACGACCTGGCGGACAGCATAATTTGGTGGACTGGATGAAACCGATGCTTTCTAACAAAAGGAAGCTGAAGTCCATTATGGACGCCCGAATGGAAGGCCAATATAGTTCAAAGGCAGCAATACTTACTGCTCAGCTTACTATAAAATGCCTAGAAGGAGAACCTAAGAAGAGGCCTTCTATGAAAGAAGTAGTGGAAGTATTGGAACAAGTTGAATTGATAAAGGAGAAATCAAAACCTTCCAAAAGCAAATCCGAGTCTTCATCTCATCGATACAAGCAGTCACCGAGAAGTTATCCTTCTCCACGTGGTGCAAGCAACCATGGATCCGGAGCCGGATCTGGAAGATGACAGGTACAACTGGAAAGGCAAACGCGAGCTGCTGAAAAATGAGTTTGTTTATACATTTAATTGTATTGAATTTGTTGTAGTCCAATTTGGTTTAATCATTGTTTTGGATTACAAATTTTGTAAAATTGTCTGTCACATCTGTACTCCATGGGAATAAATGTATTTCTATCGTTTATAAGAAAACTGATTTCATTTGTGGAAGGTATGATTACAGCTAAGATTAACAGGCAGTCCAGCCTGTTGAAATGTAAATTTGTGTAAGCCC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0332B10-uFkrv/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_U_tomato" ref_id="SGN-U591120" ref_strand="+" ref_description="SGN-U591120 Tomato 200607#2 [1 ESTs aligned] ">
      <seq>cttattgtagatgaccaattttttcttcgaatacgaaattaaattacaatacacacaaaaaaaatatttgaattttttttatttaaactaaggaatgaaagaaaaaaacaaaataagaataagaaactcaaattattataataaaagaagtcaaaaaataatttttgtatgaaaaaattaaaatataccttgaactttgatagaagaatcatatatatccctaaatattttttttaaaaaaaaattagaagtaacaaatataaatttaaaactaattttttaactttcgttaaatgaagggtatatgtgagccattttctaacggcaggggtatatgtgagccgtttgtataacgataagggcatatatgaaccacttttattacgagggatatatcagctctaaatgacaaagttgagaggtatatcagacccttttccctattttttaaaatttcatac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0332B10-uFkrv/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C02HBa0332B10.1" temp_strand="+" temp_description="C02HBa0332B10.1  CU459018.10 htgs_phase:3 submitted_to_sgn_as:C04HBa0332B10 sequenced_by:sanger upload_account_name:uk">
        <position start="75509" stop="76572"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="75809" g_stop="76254" g_length="446"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="444" r_length="444" r_score="0.906"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0332B10.1" gen_strand="+" ref_id="SGN-U591120" ref_strand="+">
        <total_alignment_score>0.906</total_alignment_score>
        <cumulative_length_of_scored_exons>446</cumulative_length_of_scored_exons>
        <coverage percentage="0.967" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0332B10.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-U591120" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="75809" e_stop="76254"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTTATTGTAGATGACCAAATTTTTTCTTCGAATACGAAATTAAATTACAATACACACACAAAAAATAGTTTAATTGTTTATTCTTTAAACTAAGGAATGAAAGAAAAAAAACAAAATAAGAATAAAAAATTCAAATAATGATAATAAAAGAAGTCAAAAAATAATTTATGTATGAAAAAAATCAAAATATACTTTGAAATTTGATAGAAGAATCATATATGTCCCTAAATAATTTTTTT-TAAAAAAA-TAAAAGTAATAAATATAAATTTAAAACTAATTTTTTAACTTCTGTTAAATAAAGGGTATATATGAGTCATTTTGTAACTGCAGGGGTATATGTGAGCCGTTTGTATAACGGTAAGGGCATATATGGGCCACTTTTATAACGAGGGGTATATCAGCTCCAAATGACAAAGTTGAGGGGTATATCAGACCCTTTTCCCATT</genome_strand>
        <mrna_strand>CTTATTGTAGATGACC-AATTTTTTCTTCGAATACGAAATTAAATTACAATACACACAAAAAAAATATTTGAATT-TTTTTTATTTAAACTAAGGAATGAAAG-AAAAAAACAAAATAAGAATAAGAAACTCAAATTATTATAATAAAAGAAGTCAAAAAATAATTTTTGTATG-AAAAAATTAAAATATACCTTGAACTTTGATAGAAGAATCATATATATCCCTAAATATTTTTTTTAAAAAAAAATTAGAAGTAACAAATATAAATTTAAAACTAATTTTTTAACTTTCGTTAAATGAAGGGTATATGTGAGCCATTTTCTAACGGCAGGGGTATATGTGAGCCGTTTGTATAACGATAAGGGCATATATGAACCACTTTTATTACGAGGGATATATCAGCTCTAAATGACAAAGTTGAGAGGTATATCAGACCCTTTTCCCTAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0332B10-uFkrv/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_U_tomato" ref_id="SGN-U577559" ref_strand="+" ref_description="SGN-U577559 Tomato 200607#2 [12 ESTs aligned] (*GB) gi|147834707|emb|CAN70556.1| (e_value=7e-100) hypothetical; (*ATH) AT5G66010.1 (e_value=5e-82)  Symbol: None | heterogeneous nuclear ribonucleoprotein, putative / hnRNP, putative, similar to Heterogeneous nuclear ribonucleoprotein SP:P55795, SP:P31943, SP:P52597 {Homo sapiens}; contains InterPro entry IPR000504: RNA-binding region RNP-1 (RNA r... ; (*SWP) sp|Q5E9J1|HNRPF_BOVIN (e_value=1e-24) Heterogeneous nuclear ribonucleoprotein F OS=Bos taurus GN=HNRNPF; ">
      <seq>gtttacacagcacttgttcgctagggtttcggtgcagatttttgattttcgcttcatctgaatcgttttctgcaaacttgcgaagctatgtacggatcaaggggggcaatgttggggagcggggggttttcagacgggtacgagatcggctcaaagagaccaagaatgatggaatcaaatccctacttcgcagtgaacagcagtgcaagtggctatcagcaggcttttgactatgataacagatgtcagccttctgcctttcctgttgttcgtttaaggggtcttccatttgattgcactgaaattgacatttacaagttctttgctggcctggacattgtggatatttttgtggtcaacaaggatggtaggttctctggagaagcatttgttgtctttgctggtcacattcaagtggattatgctcttcggagggatagacagaacatggggaggagatatgtagaggttttcagttgcaagaagcaagattattaccaagctatagctgctgaggtgaaggaaggaggttatgaatctgactaccgtgcttcccctccacctcgtccaaagagggcccagaacaaagatcaaatggagtacacagagatactgaagatgcgcggtctcccttaccgttgtaagaaatctgatatcctcaagttttttggtgatgaatttaaccttacagatgacaagataaacattacctaccgctcggatggaaaagctactggtgatgcttatgtggagtttgcatcggctgaggaggcaaagaaagctatgtgcaaggacaatatggagattggatcaaggtacatcgagctatttccttcatatccagatgaagcaagacaaggtggatcaagatcacgacgatgatggagaagatctcctagtatgaaatttttcattttgggtttagacattaagtccagttaaagactttctcaccctgttcccgtattatgttttctacacaatatatatgaaactgtggaaagtatcgaactgtccgtcttggatgtcttagttgtggtatcggccaactcactttcaactcttgtgccatcaattgattgtctttttggntgtgtt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0332B10-uFkrv/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C02HBa0332B10.1" temp_strand="-" temp_description="C02HBa0332B10.1  CU459018.10 htgs_phase:3 submitted_to_sgn_as:C04HBa0332B10 sequenced_by:sanger upload_account_name:uk">
        <position start="88612" stop="85776"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="88313" g_stop="88210" g_length="104"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="104" r_length="104" r_score="0.990"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="88209" i_stop="87062" i_length="1148">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.918" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="87061" g_stop="86069" g_length="993"/>
          <reference_exon_boundary r_type="cDNA" r_start="105" r_stop="1098" r_length="994" r_score="0.994"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0332B10.1" gen_strand="-" ref_id="SGN-U577559" ref_strand="+">
        <total_alignment_score>0.994</total_alignment_score>
        <cumulative_length_of_scored_exons>1097</cumulative_length_of_scored_exons>
        <coverage percentage="0.999" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0332B10.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-U577559" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="88313" e_stop="88210"/>
          <exon e_start="87061" e_stop="86069"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTTTACACAGCACTTGTTCGCTAGGGTTTCGGTGCAGATTTTTGATTTTCGCTTCATCTGAATCGTTTTCTGCAAACTTGCGAAGCTATGTACGGATCAAGGGGGTAAGTTTATCTTACTTGATTCATTCTTCTCCTATCTGTTCATGTGGGTGTTCTTTCTTTTTCTATGTCGATGTTTGTTTTCAAATTTTGTTTGTAGCAGTTGACGAATTTATATGATGCTTTCTGTTTGTGCCTTGTAGTAATTAATTATTGATTCTTTTTCTAGGTTGATTTTGCCTTTAGATTGTAAAATTAACACTTTCTTTTGCTATATATGGGAGGGTGAATTCGATAGCATGGGGTTTCTGAGCTGCTCTAGCATGCTTGTTACTTCAAGATTATCCTTTGATTGTTTCAACACCATAACTGAAGGATAAATTACAGTTACATGTATCTATAACAATTATCCTATATATTAACGGTTCATTATAACCCCCAAGTTTTTTTTCTTTTGGTGTTTTATGATCTTTATAACAACATTATGATATAGCATCCAAGTAATATCCGTTATAGAGAAGTTTGCCTCTACACCTTTTCAGGGAGTTGTGGATTTCTGGTTCAAAAATAAAGTTACTGATCTCTAGGAAGTTCTTACTAGCAATAATTTTTTTTTGCATCAAGATGAATAATAGTTACAAAAGCTTAGGAGCAAAAGGTCAACTCTCCTTTACATTATTAATTAAGAATCAGGGAGTGGACATAGTTCAGAAAGGAATCAGGGCAATCTAGAAGAGATAAATAAACCCAACTATACAAAAACATGAGGCAGTTAGCTTTTAAAGATTGGTATCCTGGCTTGGAATGTTTAGGTGATTTCACCCTTTTTTTATGTGATGGTGGAAAACTTTTGGGTTATGATCGTGTTCTTCAGCATGATTATCTGCCTTATCTAGCTACTTCGTTTTTGTTGCTAGATATATTAAGAACATATTGAAGGTTAAGAAATAACCCCTTTAAACTTGATAATTTTATGGTTCTGGTTTATGCTTAGGTATTGATTTCTCCTGATGTCTCCAATTTATGTGTTTTATTATCTTTTAATTATGCTTGTCGGTTGGAAGCATGTATGCAATGTTGTGTTTTTGTTTGGAGAAAAGTAGTATATGAAACTAGGTGGTAGGAGAAAATATGGGTCGGGTTTGGTTTCTTATTAACAAGGTTGAGTGGGGGAATTGTTTTTTTTTCTTTTCTGGGTATCAATAATGAAGGGCAATGTTGGGGAGCGGGGGGTTTTCAGACGGGTACGAGATCGGCTCAAAGAGACCAAGAATGATGGAATCAAATCCCTACTTCGCAGTGAACAGCAGTGCAAGTGGCTATCAGCAGGCTTTTGACTATGATAACAGATGTCAGCCTTCTGCCTTTCCTGTTGTTCGTTTAAGGGGTCTTCCATTTGATTGCACTGAAATTGACATTTACAAGTTCTTTGCTGGCCTGGACATTGTGGATATTTTTGTGGTCAACAAGGATGGTAGGTTCTCTGGAGAAGCATTTGTTGTCTTTGCTGGTCACATTCAAGTGGATTATGCTCTTCGGAGGGATAGACAGAACATGGGGAGGAGATATGTAGAGGTTTTCAGTTGCAAGAAGCAAGATTATTACCAAGCTATAGCTGCTGAGGTGAAGGAAGGAGGTTATGAATCTGACTACCGTGCTTCCCCTCCACCTCGTCCAAAGAGGGCCCAGAACAAAGATCAAATGGAGTACACAGAGATACTGAAGATGCGCGGTCTCCCTTACCGTTGTAAGAAATCTGATATCCTCAAGTTTTTTGGTGATGAATTTAACCTTACAGATGACAAGATAAACATTACCTACCGCTCGGATGGAAAAGCTACTGGTGATGCTTATGTGGAGTTTGCATCGGCTGAGGAGGCAAAGAAAGCTATGTGCAAGGACAATATGGAGATTGGATCAAGGTACATCGAGCTATTTCCTTCATATCCAGATGAAGCAAGACAAGGTGGATCAAGATCACGACGATGATGGAGAAGATCTCCTAGTATGAAATTTTTCATTTTGGGTTTAGACATTAAGTCCAGTTAAAGACTTTCTCACCCTGTTCCCGTATTATGTTTTCTACACAATATATATGAACCTGTGGAAGTTATCGAACTGTCCGTCTTGGATGTCTTAGTTGTGGTATCGGCCAACTCACTTTCAACTCTTGTGCCATCAATTGATTGTCTTTTT-GTTGTGTT</genome_strand>
        <mrna_strand>GTTTACACAGCACTTGTTCGCTAGGGTTTCGGTGCAGATTTTTGATTTTCGCTTCATCTGAATCGTTTTCTGCAAACTTGCGAAGCTATGTACGGATCAAGGGG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGCAATGTTGGGGAGCGGGGGGTTTTCAGACGGGTACGAGATCGGCTCAAAGAGACCAAGAATGATGGAATCAAATCCCTACTTCGCAGTGAACAGCAGTGCAAGTGGCTATCAGCAGGCTTTTGACTATGATAACAGATGTCAGCCTTCTGCCTTTCCTGTTGTTCGTTTAAGGGGTCTTCCATTTGATTGCACTGAAATTGACATTTACAAGTTCTTTGCTGGCCTGGACATTGTGGATATTTTTGTGGTCAACAAGGATGGTAGGTTCTCTGGAGAAGCATTTGTTGTCTTTGCTGGTCACATTCAAGTGGATTATGCTCTTCGGAGGGATAGACAGAACATGGGGAGGAGATATGTAGAGGTTTTCAGTTGCAAGAAGCAAGATTATTACCAAGCTATAGCTGCTGAGGTGAAGGAAGGAGGTTATGAATCTGACTACCGTGCTTCCCCTCCACCTCGTCCAAAGAGGGCCCAGAACAAAGATCAAATGGAGTACACAGAGATACTGAAGATGCGCGGTCTCCCTTACCGTTGTAAGAAATCTGATATCCTCAAGTTTTTTGGTGATGAATTTAACCTTACAGATGACAAGATAAACATTACCTACCGCTCGGATGGAAAAGCTACTGGTGATGCTTATGTGGAGTTTGCATCGGCTGAGGAGGCAAAGAAAGCTATGTGCAAGGACAATATGGAGATTGGATCAAGGTACATCGAGCTATTTCCTTCATATCCAGATGAAGCAAGACAAGGTGGATCAAGATCACGACGATGATGGAGAAGATCTCCTAGTATGAAATTTTTCATTTTGGGTTTAGACATTAAGTCCAGTTAAAGACTTTCTCACCCTGTTCCCGTATTATGTTTTCTACACAATATATATGAAACTGTGGAAAGTATCGAACTGTCCGTCTTGGATGTCTTAGTTGTGGTATCGGCCAACTCACTTTCAACTCTTGTGCCATCAATTGATTGTCTTTTTGGNTGTGTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0332B10-uFkrv/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_U_tomato" ref_id="SGN-U590727" ref_strand="+" ref_description="SGN-U590727 Tomato 200607#2 [1 ESTs aligned] ">
      <seq>gctagggtttcggtgcagatttttgattttcgcttcatctgaatcgttttctgcaaacttgcgaagctatgtacggatcaagggggtaagtttatcttacttgattcattcttctcctatctgttcatgtgggtgttctttctttttctatgtcgatgtttgttttcaaattttgtttgtagcagttgacgaatttatatgatgctttctgtttgtgccttgtagtaattaattattgattctttttctaggttgattttgcctttagattgtaaaattaacactttcttttgctatatatgggagggtgaattcgatagcatggggtttctgagctgctctagcatgcttgttacttcaagattatcctttgattgtttcaacaccataactgaaggataaattacagttacatgtatctataacaattatcctatatattaacggttcattataacccccaagttttttttcttttggtgttttatgatctttataacaacattatgatatagcatccaagtaatatccgttatagagaagtttgcctctacaccttttcagggagttgtggatttctggttcaaaaataaagttactgatctctangaagttcttactagcaat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0332B10-uFkrv/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C02HBa0332B10.1" temp_strand="-" temp_description="C02HBa0332B10.1  CU459018.10 htgs_phase:3 submitted_to_sgn_as:C04HBa0332B10 sequenced_by:sanger upload_account_name:uk">
        <position start="88594" stop="87368"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="88294" g_stop="87668" g_length="627"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="627" r_length="627" r_score="0.998"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0332B10.1" gen_strand="-" ref_id="SGN-U590727" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>627</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0332B10.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-U590727" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="88294" e_stop="87668"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCTAGGGTTTCGGTGCAGATTTTTGATTTTCGCTTCATCTGAATCGTTTTCTGCAAACTTGCGAAGCTATGTACGGATCAAGGGGGTAAGTTTATCTTACTTGATTCATTCTTCTCCTATCTGTTCATGTGGGTGTTCTTTCTTTTTCTATGTCGATGTTTGTTTTCAAATTTTGTTTGTAGCAGTTGACGAATTTATATGATGCTTTCTGTTTGTGCCTTGTAGTAATTAATTATTGATTCTTTTTCTAGGTTGATTTTGCCTTTAGATTGTAAAATTAACACTTTCTTTTGCTATATATGGGAGGGTGAATTCGATAGCATGGGGTTTCTGAGCTGCTCTAGCATGCTTGTTACTTCAAGATTATCCTTTGATTGTTTCAACACCATAACTGAAGGATAAATTACAGTTACATGTATCTATAACAATTATCCTATATATTAACGGTTCATTATAACCCCCAAGTTTTTTTTCTTTTGGTGTTTTATGATCTTTATAACAACATTATGATATAGCATCCAAGTAATATCCGTTATAGAGAAGTTTGCCTCTACACCTTTTCAGGGAGTTGTGGATTTCTGGTTCAAAAATAAAGTTACTGATCTCTAGGAAGTTCTTACTAGCAAT</genome_strand>
        <mrna_strand>GCTAGGGTTTCGGTGCAGATTTTTGATTTTCGCTTCATCTGAATCGTTTTCTGCAAACTTGCGAAGCTATGTACGGATCAAGGGGGTAAGTTTATCTTACTTGATTCATTCTTCTCCTATCTGTTCATGTGGGTGTTCTTTCTTTTTCTATGTCGATGTTTGTTTTCAAATTTTGTTTGTAGCAGTTGACGAATTTATATGATGCTTTCTGTTTGTGCCTTGTAGTAATTAATTATTGATTCTTTTTCTAGGTTGATTTTGCCTTTAGATTGTAAAATTAACACTTTCTTTTGCTATATATGGGAGGGTGAATTCGATAGCATGGGGTTTCTGAGCTGCTCTAGCATGCTTGTTACTTCAAGATTATCCTTTGATTGTTTCAACACCATAACTGAAGGATAAATTACAGTTACATGTATCTATAACAATTATCCTATATATTAACGGTTCATTATAACCCCCAAGTTTTTTTTCTTTTGGTGTTTTATGATCTTTATAACAACATTATGATATAGCATCCAAGTAATATCCGTTATAGAGAAGTTTGCCTCTACACCTTTTCAGGGAGTTGTGGATTTCTGGTTCAAAAATAAAGTTACTGATCTCTANGAAGTTCTTACTAGCAAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0332B10-uFkrv/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_U_tomato" ref_id="SGN-U578000" ref_strand="+" ref_description="SGN-U578000 Tomato 200607#2 [2 ESTs aligned] ">
      <seq>gttcgctagggtttcggtgcagatttttgattttcgcttcatctgaatcgttttctgcaaacttgcgaagctatgtacggatcaagggggtaagtttatcttacttgattcattcttctcctatctgttcatgtgggtgttctttctttttctatgtcgatgtttgttttcaaattttgtttgtagcagttgacgaatttatatgatgctttctgtttgtgccttgtagtaattaattattgattctttttctaggttgattttgcctttagattgtaaaattaacactttcttttgctatatatgggagggtgaattcgatagcatggggtttctgagctgctctagcatgcttgttacttcaagattatcctttgattgtttcaacaccataactgaaggataaattacagttacatgtatctataacaattatcctatatattaacggttcattataacccccaagttttttttcttttggtgttttatgatctttataacaacattatgatatagcatccaagtaatatccgttatagagaagtttgcctctacaccttttcnggnnnttgtggnnttctggntcaaaaataaagttactgatctct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0332B10-uFkrv/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C02HBa0332B10.1" temp_strand="-" temp_description="C02HBa0332B10.1  CU459018.10 htgs_phase:3 submitted_to_sgn_as:C04HBa0332B10 sequenced_by:sanger upload_account_name:uk">
        <position start="88598" stop="87388"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="88298" g_stop="87688" g_length="611"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="611" r_length="611" r_score="0.989"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0332B10.1" gen_strand="-" ref_id="SGN-U578000" ref_strand="+">
        <total_alignment_score>0.989</total_alignment_score>
        <cumulative_length_of_scored_exons>611</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0332B10.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-U578000" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="88298" e_stop="87688"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTTCGCTAGGGTTTCGGTGCAGATTTTTGATTTTCGCTTCATCTGAATCGTTTTCTGCAAACTTGCGAAGCTATGTACGGATCAAGGGGGTAAGTTTATCTTACTTGATTCATTCTTCTCCTATCTGTTCATGTGGGTGTTCTTTCTTTTTCTATGTCGATGTTTGTTTTCAAATTTTGTTTGTAGCAGTTGACGAATTTATATGATGCTTTCTGTTTGTGCCTTGTAGTAATTAATTATTGATTCTTTTTCTAGGTTGATTTTGCCTTTAGATTGTAAAATTAACACTTTCTTTTGCTATATATGGGAGGGTGAATTCGATAGCATGGGGTTTCTGAGCTGCTCTAGCATGCTTGTTACTTCAAGATTATCCTTTGATTGTTTCAACACCATAACTGAAGGATAAATTACAGTTACATGTATCTATAACAATTATCCTATATATTAACGGTTCATTATAACCCCCAAGTTTTTTTTCTTTTGGTGTTTTATGATCTTTATAACAACATTATGATATAGCATCCAAGTAATATCCGTTATAGAGAAGTTTGCCTCTACACCTTTTCAGGGAGTTGTGGATTTCTGGTTCAAAAATAAAGTTACTGATCTCT</genome_strand>
        <mrna_strand>GTTCGCTAGGGTTTCGGTGCAGATTTTTGATTTTCGCTTCATCTGAATCGTTTTCTGCAAACTTGCGAAGCTATGTACGGATCAAGGGGGTAAGTTTATCTTACTTGATTCATTCTTCTCCTATCTGTTCATGTGGGTGTTCTTTCTTTTTCTATGTCGATGTTTGTTTTCAAATTTTGTTTGTAGCAGTTGACGAATTTATATGATGCTTTCTGTTTGTGCCTTGTAGTAATTAATTATTGATTCTTTTTCTAGGTTGATTTTGCCTTTAGATTGTAAAATTAACACTTTCTTTTGCTATATATGGGAGGGTGAATTCGATAGCATGGGGTTTCTGAGCTGCTCTAGCATGCTTGTTACTTCAAGATTATCCTTTGATTGTTTCAACACCATAACTGAAGGATAAATTACAGTTACATGTATCTATAACAATTATCCTATATATTAACGGTTCATTATAACCCCCAAGTTTTTTTTCTTTTGGTGTTTTATGATCTTTATAACAACATTATGATATAGCATCCAAGTAATATCCGTTATAGAGAAGTTTGCCTCTACACCTTTTCNGGNNNTTGTGGNNTTCTGGNTCAAAAATAAAGTTACTGATCTCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0332B10-uFkrv/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_U_tomato" ref_id="SGN-U563016" ref_strand="+" ref_description="SGN-U563016 Tomato 200607#2 [3 ESTs aligned] (*GB) gi|22329188|ref|NP_195278.2| (e_value=1e-46) expressed protein [Arabidopsis thaliana]; (*ATH) AT4G35530.1 (e_value=1e-48) | Symbol: None | phosphatidylinositolglycan-related, contains weak similarity to Swiss-Prot:Q14442 phosphatidylinositol-glycan biosynthesis, class H protein (PIG-H) (Homo sapiens) | chr4:16871779-16873657 REVERSE | Aliases: F8D20.40, F8D20_40; ">
      <seq>cggccgggggatgggtccggatcaacccgttgagagttatcttcttgaatccctgatcaaatctgcaattcgtcgacgttgatgccggagtaacagtggcatggcggaggcattggccattgcagtaggaaaatacacatacgtacatgaagtgggtaaaggcccacctgaagccattgacgctcaccatattgtggttcgaaggagtagagaaaagggtttcaatttatgcctatttactcttctcctttttgcctatcccacctttctgttattccggcagggaaagctagatactcttcatatttggagcttagttatcatgacattgcttatgaggttatttctaaagaagccagttaagaaagagtctgttctaattcttccagcttttggagttcaacttgagactcagtatggaagtgggaaaacagttcgccagtttgtccccatcagcaggattttgaaaccagtgctgacagaatgtgtcacaccaatcacctgttattggagtctgtctttgattattcgaggagaggaagaacttatgctagtattcaaggaattacgtccaccagtgaagatgttagcgcccatctggaaggctttatgtgctgccattgaatgtggagaatgcacggagacgattacatagattgtaatagtataatctcaaccaattcaattctagtataaattttttttccagcatttgtattctttacatttgaagttgtaaatggcattgatatagtcctccatattatcatcacacatgcttcctgcaaaatggctaaatcatatgagccctgttactgcactgag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0332B10-uFkrv/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C02HBa0332B10.1" temp_strand="+" temp_description="C02HBa0332B10.1  CU459018.10 htgs_phase:3 submitted_to_sgn_as:C04HBa0332B10 sequenced_by:sanger upload_account_name:uk">
        <position start="96719" stop="101109"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="97019" g_stop="97292" g_length="274"/>
          <reference_exon_boundary r_type="cDNA" r_start="10" r_stop="283" r_length="274" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="97293" i_stop="97761" i_length="469">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.951" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="97762" g_stop="97846" g_length="85"/>
          <reference_exon_boundary r_type="cDNA" r_start="284" r_stop="368" r_length="85" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="97847" i_stop="99446" i_length="1600">
            <donor d_prob="0.981" d_score="1.00"/>
            <acceptor a_prob="0.933" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="99447" g_stop="99501" g_length="55"/>
          <reference_exon_boundary r_type="cDNA" r_start="369" r_stop="423" r_length="55" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="99502" i_stop="100146" i_length="645">
            <donor d_prob="0.977" d_score="1.00"/>
            <acceptor a_prob="0.877" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="100147" g_stop="100285" g_length="139"/>
          <reference_exon_boundary r_type="cDNA" r_start="424" r_stop="562" r_length="139" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="100286" i_stop="100547" i_length="262">
            <donor d_prob="0.984" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="100548" g_stop="100810" g_length="263"/>
          <reference_exon_boundary r_type="cDNA" r_start="563" r_stop="825" r_length="263" r_score="0.996"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0332B10.1" gen_strand="+" ref_id="SGN-U563016" ref_strand="+">
        <total_alignment_score>0.999</total_alignment_score>
        <cumulative_length_of_scored_exons>816</cumulative_length_of_scored_exons>
        <coverage percentage="0.989" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0332B10.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-U563016" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="97019" e_stop="97292"/>
          <exon e_start="97762" e_stop="97846"/>
          <exon e_start="99447" e_stop="99501"/>
          <exon e_start="100147" e_stop="100285"/>
          <exon e_start="100548" e_stop="100810"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GATGGGTCCGGATCAACCCGTTGAGAGTTATCTTCTTGAATCCCTGATCAAATCTGCAATTCGTCGACGTTGATGCCGGAGTAACAGTGGCATGGCGGAGGCATTGGCCATTGCAGTAGGAAAATACACATACGTACATGAAGTGGGTAAAGGCCCACCTGAAGCCATTGACGCTCACCATATTGTGGTTCGAAGGAGTAGAGAAAAGGGTTTCAATTTATGCCTATTTACTCTTCTCCTTTTTGCCTATCCCACCTTTCTGTTATTCCGGCAGGTAAATTATACCTTCATCTTCCTTGCCAAGCCAATCTCGTTGTTTCCTTATTTCATTTCATTTCAAATTAGAGTTCATCAGCCCTAGAAATGTAATCTCTAATGGAACTCTTAGTTCACATAATGCTGGTATTTATGATATTAGTAATAGTACTACCAGTTTATGTAAAGTGTGATTCTTTTCCCCAATTTATACTGCCTCTCTTGCTAGTTCTGAAGAATTTTATCATCTGGCTTGAAAATTGCAATTAGGGGTTTCCGTTTTCCTGGAATTAGAAGGAAGAGGGTAGGATAATACTCACTTTTTCTATCCTCAATAGCTTTAGCAATGATAATAGTATTTTGTTTGTGGTGGTTAATCATTTGGGGTTTTAAGTCTGTTAAAGATGTAGCTGGGGTCAAAACTTGGTTCATCTGAATTATGAAGTAAAAACATTGTGTTTGATTTGATGGGAGGTCTTTTAATGCAGGGAAAGCTAGATACTCTTCATATTTGGAGCTTAGTTATCATGACATTGCTTATGAGGTTATTTCTAAAGAAGCCAGTTAAGAAAGGTGAGGATGTGTAACTTCTATTAATTTGTACAGCTTATATTGTGCATTTTCCAGATTTAATCACATCCACTGTTATATGGGTCGGTATGAAATCCCTTCAGCTGGAAATCACTGCCGTTGCACTTTGTATTGATGCACATTGTGTGAGAAGGTCAAAATCTGTGACCAAAACTCATTAAATATTCCATGTCCTTCTCACTCGGTAGCTTCAGTTAGTACCTTGGATATAATACCTTTCGCCTTAGAATTGTCTGTCAATAGGAATTGAAGTATTATCTATCATAGTAGGTAAAAGTTCTTGACAGAGTTTTAATATGGTAGTTGATATAGCTTAACCTTTAATCAGTTTTAAACCCAGCATATGCAGTGGTAAATATTGATTGTTGTATGGTATCACTGAAATGAATATACTAATATTTGCTGTATTTTTGTAGTTATTATGTTCTAGTTTCTTGCAAACGATTGATTAAAGTTTGATAATCAGTGTCTGGCGATCTGGGGATCATTACATTCCCCTTATCCTTGTATATATATGTGTGCGCACGGATTTGTATGTACGTATATGTTTCCAAATAACTAGGATTTCAGGACCTTAGTATCGAAAGCCAACAAAAGGAGCTGGGTAAATATAAATAATGTGTGTGAGTTTGTTTGTGCGTGTAATTCTTGCTTGTTTCCGGCATCAAAAAGTTTGCTAGAACACAGAAACTATATGCTAAGAGGAAATTTTATTTGGAACCAAGATGATGGGGCATCCATTTGTGGTTCATGTACAATCTATCAATCAACTATATCTCGGTCACAAGTTAGTTGGTTTCCCATCTGTGAGTTCTGAATCATTTTGGGACAATTTTATTAAATCTGGTAAAGAGATTTTCTTCCAACGCAAATTTTAGGCTCTCTTGAAACTAAAGGTTTTCTGAATCACCCTTACCCCTGCCAGGACATAATGTTAAGTGTAATAAGAGCAACTAAATCTTAATCTTAATTTGTTGCTATTGCTTATACAGATCCATTACTATGTTCTTATTTGTTAAGTTCAAACTGGTCGTACAGATTGTAGGTCATTTGGAGACAACTTCACTCCATGTAGTTCTAGGTATACCTTGTCCTTCTTAGCACCTTCAAGCAACATAGTGTCACACCTATGGACAAGTGCATTTTGAGGTTGACGTAAGACATGCCTAAACTATCTCAAACAATATTCTTTCGTTTTATACTATATTTGTGCATTTGTGGTCTGTTTGTAATCATTTCTGGCTTTATCTTATATGGCCCCACATCTATCTAGAAATCGTTATTTCCACCATGACTATTCTAGTGGATATGTTTGGCCTTGCTGCCCAATATATCACCCCAATGTCACATTGCTGGTCTCATAGTTTTTTACAAAACTTGCCTTTTACTTTGTAGGAATATTCATATCACGTTGTATTTCATGTACCATACCTTCTTAATTCTCAAATATTTTGTGGATGCTTTATTGATTTAGCTTCTTCCCTTATAAAAGATAGTATAATGAATACGCTAGTATCATTTGGTTCTGGGATGTATTCACCAACTTATATTTCATTCTGTATCTTGTGTTTGCTTATGACAGAGTCTGTTCTAATTCTTCCAGCTTTTGGAGTTCAACTTGAGACTCAGTATGGAAGGTACTTACTGCTCCTGTGTAGAGGTGAATGTTTTGCTATTTGCTTAAAGTGAATTGTAAAATAATTTTCAACACTGTGATGCTTTTAAAAACCCTTTGGGGTGGCCCAATGGTTTGAGCTTGGGACTTTCATGTTGGAGGTCTCAACTTCAAAACCCCTTGCTAGCGAAAGCAAGGGGTTTGCCTTCTGGGTCGAGCTCGTCGCAATAGGCTTGGCTAGTGCGGGTTACCTCTCCTACGTGGTTTGCGAGCTATTGCATAGGAGCGGGGGTTTTGTTTATGTTTCCTTAAAGATTGCTGTGCATACGGCAACTTGTTTCTTAGTCTCTTTTCTGAGATGTTTAACTATGTTACATAAACAAGTAGAAGTGTTTAGTGTATTACTTTTGTTCTGTGCCTAGATTCTCTGTGTGCACTGCTCAAGTTATTTTCCTATATGAAATTGGACAGATGAAGTTCTTATTGCATCCAAGTTGAAAATGATTAATTTCTTAGAATCACTTGAATATATTTTGATGATACCGTTTACATGGAACCATGAGGGTACCATTTTACAATTCTTGTATCTGATCTGAGAAACTCCTACCTGTTGTTTTCAGTTTTATGTTTATCAAAATAAAATTCTAATTCAGCCCTTTGTATTTAGTGGGAAAACAGTTCGCCAGTTTGTCCCCATCAGCAGGATTTTGAAACCAGTGCTGACAGAATGTGTCACACCAATCACCTGTTATTGGAGTCTGTCTTTGATTATTCGAGGAGAGGAAGAACTTATGCTAGTATTCAAGGTGAAATTTCTATCCCTGCTATATTTATCTAGCAAATCCTTAGCAATCTTCATACTCGTATCTTTGTAGTTGAAAAATAGCCCTTCAAAATGAGATGTCCAGTTTCTAGCTTCGAATTTTGTTTGCTTTTTGGTTGGAATTTAAGATAGAACAAACAAAGGAAAGGACTTTTAATCAACACAAAGGACTTGGTAGAGAATATAACTCCAGTTTTTTTTTTCTCTTACTTACACAATTTGCTGTATTCTAATATAATATCCAGGAATTACGTCCACCAGTGAAGATGTTAGCGCCCATCTGGAAGGCTTTATGTGCTGCCATTGAATGTGGAGAATGCACGGAGACGATTACATAGATTGTAATAGTATAATCTCAACCAATTCAATTCTAGTATAAATTTTTTTTCCAGCATTTGTATTCTTTACATTTGAAGTTGTAAATGGCATTGATATAGTCCTCCATATTATCATCACACATGCTTCCTGCAAAATGGCTAAATCATATGAGCCCTGTTACTGCACTGAA</genome_strand>
        <mrna_strand>GATGGGTCCGGATCAACCCGTTGAGAGTTATCTTCTTGAATCCCTGATCAAATCTGCAATTCGTCGACGTTGATGCCGGAGTAACAGTGGCATGGCGGAGGCATTGGCCATTGCAGTAGGAAAATACACATACGTACATGAAGTGGGTAAAGGCCCACCTGAAGCCATTGACGCTCACCATATTGTGGTTCGAAGGAGTAGAGAAAAGGGTTTCAATTTATGCCTATTTACTCTTCTCCTTTTTGCCTATCCCACCTTTCTGTTATTCCGGCAG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGAAAGCTAGATACTCTTCATATTTGGAGCTTAGTTATCATGACATTGCTTATGAGGTTATTTCTAAAGAAGCCAGTTAAGAAAG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGTCTGTTCTAATTCTTCCAGCTTTTGGAGTTCAACTTGAGACTCAGTATGGAAG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGGGAAAACAGTTCGCCAGTTTGTCCCCATCAGCAGGATTTTGAAACCAGTGCTGACAGAATGTGTCACACCAATCACCTGTTATTGGAGTCTGTCTTTGATTATTCGAGGAGAGGAAGAACTTATGCTAGTATTCAAG......................................................................................................................................................................................................................................................................GAATTACGTCCACCAGTGAAGATGTTAGCGCCCATCTGGAAGGCTTTATGTGCTGCCATTGAATGTGGAGAATGCACGGAGACGATTACATAGATTGTAATAGTATAATCTCAACCAATTCAATTCTAGTATAAATTTTTTTTCCAGCATTTGTATTCTTTACATTTGAAGTTGTAAATGGCATTGATATAGTCCTCCATATTATCATCACACATGCTTCCTGCAAAATGGCTAAATCATATGAGCCCTGTTACTGCACTGAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0332B10-uFkrv/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_U_tomato" ref_id="SGN-U585600" ref_strand="+" ref_description="SGN-U585600 Tomato 200607#2 [9 ESTs aligned] (*GB) gi|157344982|emb|CAO71710.1| (e_value=1e-32) unnamed; (*ATH) AT2G17530.1 (e_value=8e-30) | Symbol: None | protein kinase family protein, identical to SRPK2 (Arabidopsis thaliana) gi:9843645:emb:CAC03676; contains protein kinase domain, Pfam:PF00069 | chr2:7633478-7636231 FORWARD | Aliases: MJB20.9, MJB20_9; (*SWP) sp|Q5RD27|SRPK1_PONAB (e_value=9e-13) Serine/threonine-protein kinase SRPK1 OS=Pongo abelii GN=SRPK1; ">
      <seq>ggggctcgatctaaagattactttgacagatatggagatttgaagaggatccggaggctgaagtatgggtctttagaaaaattacttatcgacaagttcaggttttctgaaattgatgctcttgaatttgccaaatttctttgtccccttcttgattttgagcctgagaatcgaccaactgcacagcagtgcttgcaacacccatggctcaacattaaaggtcaaaaccaaacagaggtgaagagtgaatctggtatggaaaaggttaatgttgggatgataaacctacaagtgaaggccggtaagtgatgtatgaatgaatggttggtcttctcactgcagcaccgctccattgccctctctcccccgtatcagattacttgtgaattaattttggattgtgtttaagatttaattagattcaagtcattggtagatttagatgtattattttgattgattatcacgaggaaacgacctccaaaaggagaaattggcattagtccctgaaatatccctaggtgaagcttccacttgatttaatgatgttgacatttacaaaagaaactatccttcattccgctaacaaataagttggcccgtgttctattgaaggcctggaggaacaaagcaagctctacagcgttagtagtctatggcttcatctggactcaacattatcaatctaggaaaggatctttagcagcctgtagagaacattacattaatgggagcctcttgatttatggagtgtgttatgtacatttaaacatcaaaagatttggattctgtggaggaagtttattctccatttccgcaggtaggaaagaattcttttcttttttgattttaactcaggttgaagtctttgtaacaactgatatataattttttttgtatacatcactctgaagtatattagttgccacttattttttttcagag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0332B10-uFkrv/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C02HBa0332B10.1" temp_strand="-" temp_description="C02HBa0332B10.1  CU459018.10 htgs_phase:3 submitted_to_sgn_as:C04HBa0332B10 sequenced_by:sanger upload_account_name:uk">
        <position start="104362" stop="102818"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="104062" g_stop="103118" g_length="945"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="945" r_length="945" r_score="0.998"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0332B10.1" gen_strand="-" ref_id="SGN-U585600" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>945</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0332B10.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-U585600" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="104062" e_stop="103118"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGGGCTCGATCTAAAGATTACTTTGACAGATATGGAGATTTGAAGAGGATCCGGAGGCTGAAGTATGGGTCTTTAGAAAAATTACTTATCGACAAGTTCAGGTTTTCTGAAATTGATGCTCTTGAATTTGCCAAATTTCTTTGTCCCCTTCTTGATTTTGAGCCTGAGAATCGACCAACTGCACAGCAGTGCTTGCAACACCCATGGCTCAACATTAAAGGTCAAAACCAAACAGAGGTGAAGAGTGAATCTGGTATGGAAAAGGTTAATGTTGGGATGAGAAACCTACAAGTGAAGGCCGGTAAGTGATGTATGAATGAATGGTTGGTCTTCTCACTGCAGCACCGCTCCATTGCCCTCTCTCCCCCGTATCAGATTACTTGTGAATTAATTTTGGATTGTGTTTAAGATTTAATTAGATTCAAGTCATTGGTAGATTTAGATGTATTATTTTGATTGATTATCACGAGGAAACGACCTCCAAAAGGAGAAATTGGCATTAGTCCCTGAAATATCCCTAGGTGAAGCTTCCACTTGATTTAATGATGTTGACATTTACAAAAGAAACTATCCTTCATTCCGCTAACAAATAAGTTGGCCCGTGTTCTATTGAAGGCCTGGAGGAACAAAGCAAGCTCTACAGCGTTAGTAGTCTATGGCTTCATCTGGACTCAACATTATCAATCTAGGAAAGGATCTTTAGCAGCCTGTAGAGAACATTACATTAATGGGAGCCTCTTGATTTATGGAGTGTGTTATGTACATTTAAACATCAAAAGATTTGGATTCTGTGGAGGAAGTTTATTCTCCATTTCCGCAGGTAGGAAAGAATTCTTTTCTTTTTTGATTTTAACTCAGGTTGAAGTCTTTGTAACAACTGATATATAATTTTTTTTGTATACATCACTCTGAAGTATATTAGTTGCCACTTATTTTTTTACAGAG</genome_strand>
        <mrna_strand>GGGGCTCGATCTAAAGATTACTTTGACAGATATGGAGATTTGAAGAGGATCCGGAGGCTGAAGTATGGGTCTTTAGAAAAATTACTTATCGACAAGTTCAGGTTTTCTGAAATTGATGCTCTTGAATTTGCCAAATTTCTTTGTCCCCTTCTTGATTTTGAGCCTGAGAATCGACCAACTGCACAGCAGTGCTTGCAACACCCATGGCTCAACATTAAAGGTCAAAACCAAACAGAGGTGAAGAGTGAATCTGGTATGGAAAAGGTTAATGTTGGGATGATAAACCTACAAGTGAAGGCCGGTAAGTGATGTATGAATGAATGGTTGGTCTTCTCACTGCAGCACCGCTCCATTGCCCTCTCTCCCCCGTATCAGATTACTTGTGAATTAATTTTGGATTGTGTTTAAGATTTAATTAGATTCAAGTCATTGGTAGATTTAGATGTATTATTTTGATTGATTATCACGAGGAAACGACCTCCAAAAGGAGAAATTGGCATTAGTCCCTGAAATATCCCTAGGTGAAGCTTCCACTTGATTTAATGATGTTGACATTTACAAAAGAAACTATCCTTCATTCCGCTAACAAATAAGTTGGCCCGTGTTCTATTGAAGGCCTGGAGGAACAAAGCAAGCTCTACAGCGTTAGTAGTCTATGGCTTCATCTGGACTCAACATTATCAATCTAGGAAAGGATCTTTAGCAGCCTGTAGAGAACATTACATTAATGGGAGCCTCTTGATTTATGGAGTGTGTTATGTACATTTAAACATCAAAAGATTTGGATTCTGTGGAGGAAGTTTATTCTCCATTTCCGCAGGTAGGAAAGAATTCTTTTCTTTTTTGATTTTAACTCAGGTTGAAGTCTTTGTAACAACTGATATATAATTTTTTTTGTATACATCACTCTGAAGTATATTAGTTGCCACTTATTTTTTTTCAGAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0332B10-uFkrv/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_U_tomato" ref_id="SGN-U595878" ref_strand="+" ref_description="SGN-U595878 Tomato 200607#2 [1 ESTs aligned] ">
      <seq>ctctgtactttataagtggcaactaatatacttcagagtgatgtatacctttaaaattatatatcagttgttacaaagacttcaacctgagttaaaatcaaaaaagaaaagaattctttccttcctgcggaaatggagaataaacttcctccacagaatccaaatcttttgaggtttaaatgtacataacaccctccataaatcaagaggctcccattaatgtaatgttctctac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0332B10-uFkrv/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C02HBa0332B10.1" temp_strand="+" temp_description="C02HBa0332B10.1  CU459018.10 htgs_phase:3 submitted_to_sgn_as:C04HBa0332B10 sequenced_by:sanger upload_account_name:uk">
        <position start="102830" stop="103653"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="103118" g_stop="103353" g_length="236"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="235" r_length="235" r_score="0.949"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0332B10.1" gen_strand="+" ref_id="SGN-U595878" ref_strand="+">
        <total_alignment_score>0.949</total_alignment_score>
        <cumulative_length_of_scored_exons>236</cumulative_length_of_scored_exons>
        <coverage percentage="1.004" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0332B10.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-U595878" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="103118" e_stop="103353"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTCTGTAAAAAAATAAGTGGCAACTAATATACTTCAGAGTGATGTATACAAAAAAAATTATATATCAGTTGTTACAAAGACTTCAACCTGAGTTAAAATCAAAAAAGAAAAGAATTCTTTCCTACCTGCGGAAATGGAGAATAAACTTCCTCCACAGAATCCAAATCTTTTGATGTTTAAATGTACATAACACACTCCATAAATCAAGAGGCTCCCATTAATGTAATGTTCTCTAC</genome_strand>
        <mrna_strand>CTCTGT-ACTTTATAAGTGGCAACTAATATACTTCAGAGTGATGTATACCTTTAAAATTATATATCAGTTGTTACAAAGACTTCAACCTGAGTTAAAATCAAAAAAGAAAAGAATTCTTTCCTTCCTGCGGAAATGGAGAATAAACTTCCTCCACAGAATCCAAATCTTTTGAGGTTTAAATGTACATAACACCCTCCATAAATCAAGAGGCTCCCATTAATGTAATGTTCTCTAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0332B10-uFkrv/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_U_tomato" ref_id="SGN-U573572" ref_strand="+" ref_description="SGN-U573572 Tomato 200607#2 [2 ESTs aligned] (*GB) gi|15237030|ref|NP_195275.1| (e_value=2e-26) protein kinase family [Arabidopsis thaliana]; (*ATH) AT4G35500.2 (e_value=8e-29) | Symbol: None | protein kinase family protein, contains eukaryotic protein kinase domain, INTERPRO:IPR000719 | chr4:16857358-16859608 FORWARD | Aliases: None; ">
      <seq>atacctaaaacttgaaaatgttcttttactttccacgataaatgccacaaaggatccaattagatcgggaacaccgcccatacttgaaaggcctgaagggatcccaaagggaggagcaactatgaatattattgagaaaaagctaaaacaaagggcaaggagggcagcagccaggatatccggtagacggtcttcaatgggtggggtaggaggaggtgcgaaaacaaatagaagtctcgatggtattgacttgaaatgcaaggttgtggattttggaagtgcatgctgggctgacaagcattttgcacaagaaattcagacacgacagtatagatct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0332B10-uFkrv/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C02HBa0332B10.1" temp_strand="-" temp_description="C02HBa0332B10.1  CU459018.10 htgs_phase:3 submitted_to_sgn_as:C04HBa0332B10 sequenced_by:sanger upload_account_name:uk">
        <position start="105320" stop="104384"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="105020" g_stop="104684" g_length="337"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="337" r_length="337" r_score="0.991"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0332B10.1" gen_strand="-" ref_id="SGN-U573572" ref_strand="+">
        <total_alignment_score>0.991</total_alignment_score>
        <cumulative_length_of_scored_exons>337</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0332B10.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-U573572" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="105020" e_stop="104684"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGACCTAAAACTTGAAAATGTTCTTTTACTTTCCACGATAAATGCCACAAAGGATCCAATTAGATCGGGAACACCGCCCATACTTGAAAGGCCTGAAGGGATCCCAAAGGGAGGAGCAACTATGAATATTATTGAGAAAAAGCTAAAACAAAGGGCAAGGAGGGCAGCAGCCAGGATATCCGGTAGACGGTCTTCAATGGGTGGGGTAGGAGGAGGTGCGAAAACAAATAGAAGTCTCGATGGTATTGACTTGAAGTGCAAGGTTGTGGATTTTGGAAGTGCATGCTGGGCTGACAAGCAGTTTGCACAAGAAATTCAGACACGACAGTATAGATCT</genome_strand>
        <mrna_strand>ATACCTAAAACTTGAAAATGTTCTTTTACTTTCCACGATAAATGCCACAAAGGATCCAATTAGATCGGGAACACCGCCCATACTTGAAAGGCCTGAAGGGATCCCAAAGGGAGGAGCAACTATGAATATTATTGAGAAAAAGCTAAAACAAAGGGCAAGGAGGGCAGCAGCCAGGATATCCGGTAGACGGTCTTCAATGGGTGGGGTAGGAGGAGGTGCGAAAACAAATAGAAGTCTCGATGGTATTGACTTGAAATGCAAGGTTGTGGATTTTGGAAGTGCATGCTGGGCTGACAAGCATTTTGCACAAGAAATTCAGACACGACAGTATAGATCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0332B10-uFkrv/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_U_tomato" ref_id="SGN-U573573" ref_strand="+" ref_description="SGN-U573573 Tomato 200607#2 [3 ESTs aligned] (*GB) gi|157344982|emb|CAO71710.1| (e_value=4e-85) unnamed; (*ATH) AT2G17530.2 (e_value=2e-82) |; (*SWP) sp|P36616|DSK1_SCHPO (e_value=5e-42) Protein kinase dsk1 OS=Schizosaccharomyces pombe GN=dsk1; ">
      <seq>ataggcatgggaaaaaagaggaaaagaggaaaaagtggagaaaacatggtatacaaggccacatataaccccgcaataacgcactgtctcattcattctttgcttccataaagctttttcctcgacattttccactttgcttcttctctaatccaatttcttttgtagatcacactctgcgaatcacctctgatcgatcatgtcaggttcaccgtcctcatcgtcggcatccgaagatgaagatgaaggaatcgattcgtacagaaaaggaggatatcatgccgtcagaatcggtgattcattttccggtggacgatatatcgctcagagaaaacttggctggggagaattctctaccgtttggctcgcttatgatactcgatcatccgaatttgtagctttgaagatccagaaaagtgcaccacaatttgctcaagctgctcttcacgaaattgaagtcctttctgctattgccgacggtgatacctctaatagtaaatatgttgttagacttattgaccattttaagcatacaggaccaaatggacagcattcatgcatggtccttgaatttcttggtgacagcttattgcgtctcgtcaaatataatcgttataaaggccttgagctggacaaagttagggaaatatgcaagtgcattctaattggtctagattatttgcacagggaacttggaattattcatacagacctaaaacttgaaaatgttcttttactttccacgataaatgccacaaaggatccaattagatcgggaacaccgcccata</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0332B10-uFkrv/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C02HBa0332B10.1" temp_strand="-" temp_description="C02HBa0332B10.1  CU459018.10 htgs_phase:3 submitted_to_sgn_as:C04HBa0332B10 sequenced_by:sanger upload_account_name:uk">
        <position start="107680" stop="104639"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="107380" g_stop="106993" g_length="388"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="388" r_length="388" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="106992" i_stop="105341" i_length="1652">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="105340" g_stop="104939" g_length="402"/>
          <reference_exon_boundary r_type="cDNA" r_start="389" r_stop="790" r_length="402" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0332B10.1" gen_strand="-" ref_id="SGN-U573573" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>790</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0332B10.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-U573573" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="107380" e_stop="106993"/>
          <exon e_start="105340" e_stop="104939"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATAGGCATGGGAAAAAAGAGGAAAAGAGGAAAAAGTGGAGAAAACATGGTATACAAGGCCACATATAACCCCGCAATAACGCACTGTCTCATTCATTCTTTGCTTCCATAAAGCTTTTTCCTCGACATTTTCCACTTTGCTTCTTCTCTAATCCAATTTCTTTTGTAGATCACACTCTGCGAATCACCTCTGATCGATCATGTCAGGTTCACCGTCCTCATCGTCGGCATCCGAAGATGAAGATGAAGGAATCGATTCGTACAGAAAAGGAGGATATCATGCCGTCAGAATCGGTGATTCATTTTCCGGTGGACGATATATCGCTCAGAGAAAACTTGGCTGGGGAGAATTCTCTACCGTTTGGCTCGCTTATGATACTCGATCATCCGTAACTTTTCTCTTTATTCATCAATAACTTCCTTCATTTCCTTTTCATTTTGTTGTTGATGCTTATTTGAGATCGTTATTTTCACGATTTGTGAAAAGTTTAGACTTAATTGATGAATATCATCTTTGTTTGTGGCTAACTTGTCGGTGATTGTTTAGATTAGATCACACCTTCATCAAGTAACTATACTGTCCAATTGGTGGATACTAATCAACTTTATTTTTTTCTGTCACGGAGGATTCTATTGGACTAAGTTGAATGAGTATGTTGTTAATATTGAGGGAAACTCAGCTTAGTCTTAGACCTATATAAAGGAGTGTCGTGTAGATTGATAGCCAGGTTAAATTAGTCTAAATATGATGAATACTGATTTAGGATCCTGAAATAGAGTGGAGTGGATGTACGGGTTTCGTATAGAAAATCCCAAAGTAGTTCATTGATCTATTGATTTATCGGTAGCAGCCAGGGATTTTGAAGTTGGACGGTTCAGATTGAATTTGTAGCATTCTGGCTACTAAGTTGTTGCACCACTTTTTGTCAGGATCTCTGAGGGCAATATTTCCCCATTAAAAATGACACTTAAGAGAAATCTTATAGACTTGTCTAATAATGGAAATAGATTCTTCTCTGATACCTTATGCTGCACTTGAACATATTGGGACATCTATTTTTGTTTTTTCTCCCACTGATGAGGTTCAGCCTTACCTATCTCCTTGTGTATCTGAATGATACTTTATGTTTCTTCATATCTATATGTTTGATGGCAGTTATAAACTGATTTTGCTTGATAGTTCACACCCTTCCAAAAACTTCCCTAACACAATCTGAAGTGAGGGTTCCTTTTCTTTTCTTCTTTTTTAGTTCACTCTTCTTGTCTATATCCGACCATCTCGAGCAAGTAAAATATGTTTCTTACTGCTTACAGACTGAAATAATCTCCATTTAGTTTTAGTCATTACCATTCGAACCATTTCTTTATGGTTTTAGACTTGACATATATTGCTTATATTTGTTATGAATAATATGCATATACGAGGTCAAATTGTGAGATCCGTGACCCAAAAAACAGTTTTAAGTCCTTGGTGCTGAGGATAACTTTATGTATGCTGTTGAAACATTGTTTGAAGACCCATGAGCCATCACAAAGTGTAAAAAATGTTTGGGATGCCTTTCATCTCCAAATGCCTTAGGATAAATTCTAAGCTCCATAGAGAATTAGGATTTGAAAGTTTCCATGTCAAAGCATTTATCTAGGGGGAAATTTGACCTGGTTTGGAGTCAACTGGTGATACTAGAATGATTAAAATATCAATGCATTAATTAGCTCGCATCATCAGGAAATTCAAGGATACTTTCTTGTTATGCAGAATAAGCACATGGAATTGTTTACCAATTCTCAAAAAAGAATAAGCACATGGAATTGCTCCTCTTTGGAGAATGTTTATTAAATATGTAACTGGTTGTAAGTCACCTAATAAGCACTGAAAAGATTCAATAAGATCTTGGTTCAAAACTAATTCCAATTTCCAACAAGCATGCACATTAGATTTCTTGTTCTGTATTCTCATTGTGGATGGTTTTGAAATTTATAGAATTTTTTGAATTGTTTTCTTGGACTCTAGAGCTTATTGTGCTTAACATTGTTTGGGTAGGAATTTGTAGCTTTGAAGATCCAGAAAAGTGCACCACAATTTGCTCAAGCTGCTCTTCACGAAATTGAAGTCCTTTCTGCTATTGCCGACGGTGATACCTCTAATAGTAAATATGTTGTTAGACTTATTGACCATTTTAAGCATACAGGACCAAATGGACAGCATTCATGCATGGTCCTTGAATTTCTTGGTGACAGCTTATTGCGTCTCGTCAAATATAATCGTTATAAAGGCCTTGAGCTGGACAAAGTTAGGGAAATATGCAAGTGCATTCTAATTGGTCTAGATTATTTGCACAGGGAACTTGGAATTATTCATACAGACCTAAAACTTGAAAATGTTCTTTTACTTTCCACGATAAATGCCACAAAGGATCCAATTAGATCGGGAACACCGCCCATA</genome_strand>
        <mrna_strand>ATAGGCATGGGAAAAAAGAGGAAAAGAGGAAAAAGTGGAGAAAACATGGTATACAAGGCCACATATAACCCCGCAATAACGCACTGTCTCATTCATTCTTTGCTTCCATAAAGCTTTTTCCTCGACATTTTCCACTTTGCTTCTTCTCTAATCCAATTTCTTTTGTAGATCACACTCTGCGAATCACCTCTGATCGATCATGTCAGGTTCACCGTCCTCATCGTCGGCATCCGAAGATGAAGATGAAGGAATCGATTCGTACAGAAAAGGAGGATATCATGCCGTCAGAATCGGTGATTCATTTTCCGGTGGACGATATATCGCTCAGAGAAAACTTGGCTGGGGAGAATTCTCTACCGTTTGGCTCGCTTATGATACTCGATCATCC....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAATTTGTAGCTTTGAAGATCCAGAAAAGTGCACCACAATTTGCTCAAGCTGCTCTTCACGAAATTGAAGTCCTTTCTGCTATTGCCGACGGTGATACCTCTAATAGTAAATATGTTGTTAGACTTATTGACCATTTTAAGCATACAGGACCAAATGGACAGCATTCATGCATGGTCCTTGAATTTCTTGGTGACAGCTTATTGCGTCTCGTCAAATATAATCGTTATAAAGGCCTTGAGCTGGACAAAGTTAGGGAAATATGCAAGTGCATTCTAATTGGTCTAGATTATTTGCACAGGGAACTTGGAATTATTCATACAGACCTAAAACTTGAAAATGTTCTTTTACTTTCCACGATAAATGCCACAAAGGATCCAATTAGATCGGGAACACCGCCCATA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0332B10-uFkrv/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_U_tomato" ref_id="SGN-U563786" ref_strand="+" ref_description="SGN-U563786 Tomato 200607#2 [3 ESTs aligned] (*GB) gi|157340725|emb|CAO47530.1| (e_value=2e-62) unnamed; (*ATH) AT1G21630.1 (e_value=2e-55) | Symbol: None | calcium-binding EF hand family protein, contains INTERPRO:IPR002048 calcium-binding EF-hand domain; ESTs gb:T44428 and gb:AA395440 come from this gene | chr1:7581141-7588140 FORWARD | Aliases: F8K7.4, F8K7_4; ">
      <seq>gaaatgaaaaccatgcatttgatcacaacacataaaactaccacggcgaatgcactctgttttttcactttaccccattcattctctctagcctccggcaccggcaagtcgccgtcggctgacattctaaaaccctttgagtttttagatcaaactttgctataaatgattcgataacgattgctttacccacagatctaattcagaaccgcaatcaatcgggggaagatatctcaattgactaatggctgcacagaatcagagtccgaatatggatcaatttgacgcctattttcggcgagctgatttggatcaggatggtcggatcagtggccctgaggccgttgcatttctcaaaggctcaaatttgccccaaccagtcctcgctcagatttggacatatgctgatcaaagtcgtactggctaccttagtcgccaagaattttacaatgctctcaagcttgttacggtagcacaaaaacgagagttgactccagaaatagtgaaggctgcactattcactccagcttcagccaaaattcctgctccccaaataaaccttgcagtcataccaggtcctcaaccaactaataaggttggttctacagttcctccagttggtggtgctactccaacagcaactcaaactttcggcgttaggggtccacaaggcttaccagctcagcaaagttatgtggggcctcctaggccctcaaatcctagccctggtttccaatctcaaccaaatgtttccggacaaggaatgctagttggaagtactattgcagcttctcgccctcccagttccactgatttgtttgctggtcagaatggtcgctcacaatcaggtgccaattcccaagctcctaattcaagtggcagttctagaagtcaagatgcatttggtctggctgtatcaacaccttctgcacaacaaacacaacaagcaaccatgtcatcagtgcaaccaaatctatcaaaatcaaataatgcaactttgtcgcatggcaacctgcttgaagccaagatgcctaaagctgtttcagttgcaggaaatggatttccatccgattcactctttggagatgttttttcagttgcctcagttcaaccaaatcaaagctccacaccaactatatcttcagct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0332B10-uFkrv/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C02HBa0332B10.1" temp_strand="+" temp_description="C02HBa0332B10.1  CU459018.10 htgs_phase:3 submitted_to_sgn_as:C04HBa0332B10 sequenced_by:sanger upload_account_name:uk">
        <position start="111420" stop="116293"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="111720" g_stop="112109" g_length="390"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="391" r_length="391" r_score="0.995"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="112110" i_stop="115237" i_length="3128">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="115238" g_stop="115993" g_length="756"/>
          <reference_exon_boundary r_type="cDNA" r_start="392" r_stop="1147" r_length="756" r_score="0.997"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0332B10.1" gen_strand="+" ref_id="SGN-U563786" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>1146</cumulative_length_of_scored_exons>
        <coverage percentage="0.999" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0332B10.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-U563786" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="111720" e_stop="112109"/>
          <exon e_start="115238" e_stop="115993"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAAATGAAAACCATGC-TTTGATCACAACACATAAAACTACCACGGCGAATGCACTCTGTTTTTTCACTTTACCCCATTCATTCTCTCTAGCCTCCGGCACCGGCAAGTCGCCGTCGGCTGACATTCTAAAACCCTTTGAGTTTTTAGATCAAACTTTGCTATAAATGATTCGATAACGATTGCTTTACCCACAGATCTAATTCAGAACCGCAATCAATCGGGGGAAGATATCTCAATTGACTAATGGCTGCACAGAATCAGAGTCCGAATATGGATCAATTTGACGCCTATTTTCGGCGAGCTGATTTGGATCAGGATGGTCGGATCAGTGGCCCTGAGGCCGTTGCATTTCTCAAAGGCTCAAATTTGCCCCAACCAGTCCTCGCTCAGGTTATTTGATTTCTGCATTTCTTTCTTTTTCCCTCTCTATTACCTGCAGGTTATTCCTTAGCGCCAATGAGAAGAAATAGTATCCATTTGCTTTTCGTCATGCTACTAAGTTTTCATTTTTCTACAAAACTGGTCCTGTTTCAATATTCGCTTAATTTTTGTACTGTTTACGTATCGATGTAGCATGAAGTTCATGTGATTGCAATGTACATCAATTCATTTTTCTTGCTCTATTTTTTTTGTAGTCCATTAGGTGTATTGGTTGGATTAGGAATTTGAGTTACGTGGGCTTAGTAGGAACTATGAAGATTTGGAATATTGAGTATCAGTTGATGTTCTAAACTTCAATCCCAAACTAGTGGTGTCAGCTGTATGAATTTTCTATGCCAATTCCGCTATGTTCGGGCACAATTCAGTCTCAGTTGAAATTTTTGTAAGGGAACTTAGAAATCATCCATAGTCTGTTTAATACTGTCTTCACTTAAACCAAGTGATGGATTCAATCTTAACCAGTAGCAGATTGCCCATGAATCTAGTTTTCCTCTCTATCTTTCAGAGAGGAACCTATTTGCTGTCCATTTCTCTCTTTACCATGTGTTTCTCCTTCCCGGTTGTTCCAGTAACTGCAAGTTTTGGTTCTATGGTCGTTGTTGGCAATGGTCATCATCACGAACACCTATACAGGAATTGAACAACCGGATTCAATCTTTTGAGATTTGTGCTTCAGATGTTGGTTCCCCATACATGATGTTGGATGCTTCGTTTTGTCGTTGCAATGCTAGCTGTTACTTTTTAAGATCATTTTAGCTGCAAATTTTGTTGCACTATTATAGTATATGTATTATGGGGTGGGTTGGGATGTCCCGTTATGGAATACATGGTTGTTTAGAAATAAGTAAGTTGGCAGTTAATATACTGAACCCCAGTTTTCAGGAGTTTCAGAATTAAAACATTATGAATGTGGGGTAATAGATACTGAAAAGTTTCCTGAAGTGGTGAGATGAAAATGTTTACATGAACTGACACAACCATATGCCCTAAGTTGCTCAGTCTCAGGTGCGGTTCTCCGATATCGGTGCACATTTGGAGGTCGGATCCTTCATGATCTAAATTTTAAAATTCGGGGGTATGAATCCAGGTAAGGATACGGAGCTGGATTCGATTAAAGATAATTCAAATATCTAAAATTAGAGTTATAAATGTGCGTAAATTTGGTGGACCATTTGGAAGGAAACAAATGCGCAAATTTTTTGGATCAAGTTTGAGTATTTTTTTTGGCAAGTAAACATTCTATTTACCAAGTAAGAGTTACAGATCATAAAAAATAGCAGCCTTGGACGATCAGCTGCAACACTTAAACGTCTAAATCCCTATATGGTATGCCTTTACTCAGGGATACATATTCAACTACTCTAGTCGTTTTTCTAGTCGCAGATACAAGGATCCTCGCCCATGAACATCCTGAATGATTTTCCTGATAATCTCTTTTGCATTCCATGTTTGTCCTTGGAACACTCAACAACTCCTCTCCTGCCACCCATGGTATACATTCCCAACAAGAGTCATATGATATATTTGAGCATTGATATTGTTACCTCTCATGTGTGCTATTGCCCAGTTCACCTCCTCCTGCCATTTCATACCGTGTTTCCTGATGCCCTGCCACACCAAGATTTTCATCCAAATAGCAGATTCGTAAGGGCACACAGAAACAGATGATCAATATTTCCCACAGCAGCTTGATCAATCAATGGACAAGTATTAGATTCAACACTTCCCCAATTTGCTAGCCCGGCTTTGGTAAGTAGTCTTCCAGAGCCAAAACAAGATATATTTCCTCTTTGGAGCTCCATAATTAGACCATACGAGCTTCCTCCAGTCCACATTATTTGATTCTCCTCTCATTTTCTTGTATGTTGAACTAATAGAATAAGACCTCATGCTCAATACTTCATCTTCTTGTATGCCAGCCTCTGTGAAGTATACTTGTGCCTTTTAGATCCTTTGCACCATCCAAGAGGCTTGTTTAGGCTGCGTCCCCCATTTATTGCACTGTTGCCCATAGTACGTGTGAATCCATACTACCCAGATTTTATCTTTTTTCTGGCAAACAGCCCATAAAAGATTGCACAATGCAGCTTATTCCATGTATAAACATCTAGGAAATCCAAACCCCCTGCTAATTTAGGATAACACGATATATCCCAAGCAATCAAAGTTTTTTTTTGAGACATCAACACTGCCGGTCCACAAAAATCTTCTACATAAGGACTCTATCACTTATATAATCTTTTTGGGAAGGGCAAAATTTGAGACCAATAGATTTGTATAGCAAGTAAGACACTCTTGATGAGTTGAGTCCTTCCAGTGTATTATAAGAATCTAGAGGACCAATTAGTGATCCTTCCTGGCATTTTATCAATGAGAGGTTTACATTGGACAACAGAGGGTCTTAGTACTGAGAGTTACCCCAAGATATCTGAAAGGTAGCTCTCCTTTAAGTAAATTAAGTTCAGCCTATATCTGAACCTGTATATCACCAGGTACTCCACCAAATATATGAAGATTTTGTTCATATTAGCTATCAATTTTGATTATTTGGAGAACTCCTGGAAGCAGGCAAATAATTGCATTATAGAGTCTTTATCACCCATACAGAAAAGTAGTAAATCATCGGCAAAACTAAGCTGCACAATTTTTTTTTCATTTGGGATGAAACTGGAATCCTACTTGACTTTGTACAGTCTTCATATGTTTAGTGAGATACTCCATAACAAGCACAAATAGGAAAGGAGATCGCTGATGTATTGAACCCAGGAACTAGTTAGTAAAATATATTGGAGCTACTTTTTGATGAAGAGGAAAAAGAGAAGAAAATAGTTTTATGGTTCAGCCTGTGCTTGATGAACCATGCCTTTATATTCCAGCAGGTGATGTATTAATTAGCTTTATAATAAATATGCTGCTTGCCAAAAGTCAGGTATAGATATGAAGTTCAACACAGTCAAGATGGGGAAGAAGTAGTTTATGTAGTCTCCGTGACTTCTGTTAGATAACTGGAGCTATCGATCTCCTATTATTTTCTTAATAGTTAATACTAAAATTCACATTTCTTTTCCATTATGTAGATTTGGACATATGCTGATCAAAGTCGTACTGGCTACCTTAGTCGCCAAGAATTTTACAATACTCTCAAGCTTGTTACGGTAGCACAAAAACGAGAGTTGACTCCAGAAATAGTGAAGGCTGCACTATTCACTCCAGCTTCAGCCAAAATTCCTGCTCCCCAAATAAACCTTGCAGTCATACCAGGTCCTCAACCAACTAATAAGGTTGGTTCTACAGTTCCTCCAGTTGGTGGTGCTACTCCAACAGCAACTCAAACTTTCGGCGTTAGGGGTCCACAAGGCTTACCAGCTCAGCAAAGTTATGTGGGGCCTCCTAGGCCCTCAAATCCTAGCCCTGGTTTCCAATCTCAACCAAATGTTTCCGGACAAGGAATGCTAGTTGGAAGTACTATTGCAGCTTCTCGCCCTCCCAGTTCCACTGATTTGTTTGCTGGTCAGAATGGTCGCTCACAATCAGGTGCCAATTCCCAAGCTCCTAATTCAAGTGGCAGTTCTAGAAGTCAGGATGCATTTGGTCTGGCTGTATCAACACCTTCTGCACAACAAACACAACAAGCAACCATGTCATCAGTGCAACCAAATCTATCAAAATCAAATAATGCAACTTTGTCGCATGGCAACCTGCTTGAAGCCAAGATGCCTAAAGCTGTTTCAGTTGCAGGAAATGGATTTCCATCCGATTCACTCTTTGGAGATGTTTTTTCAGTTGCCTCAGTTCAACCAAATCAAAGCTCCACACCAACTATATCTTCAGCT</genome_strand>
        <mrna_strand>GAAATGAAAACCATGCATTTGATCACAACACATAAAACTACCACGGCGAATGCACTCTGTTTTTTCACTTTACCCCATTCATTCTCTCTAGCCTCCGGCACCGGCAAGTCGCCGTCGGCTGACATTCTAAAACCCTTTGAGTTTTTAGATCAAACTTTGCTATAAATGATTCGATAACGATTGCTTTACCCACAGATCTAATTCAGAACCGCAATCAATCGGGGGAAGATATCTCAATTGACTAATGGCTGCACAGAATCAGAGTCCGAATATGGATCAATTTGACGCCTATTTTCGGCGAGCTGATTTGGATCAGGATGGTCGGATCAGTGGCCCTGAGGCCGTTGCATTTCTCAAAGGCTCAAATTTGCCCCAACCAGTCCTCGCTCAG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTTGGACATATGCTGATCAAAGTCGTACTGGCTACCTTAGTCGCCAAGAATTTTACAATGCTCTCAAGCTTGTTACGGTAGCACAAAAACGAGAGTTGACTCCAGAAATAGTGAAGGCTGCACTATTCACTCCAGCTTCAGCCAAAATTCCTGCTCCCCAAATAAACCTTGCAGTCATACCAGGTCCTCAACCAACTAATAAGGTTGGTTCTACAGTTCCTCCAGTTGGTGGTGCTACTCCAACAGCAACTCAAACTTTCGGCGTTAGGGGTCCACAAGGCTTACCAGCTCAGCAAAGTTATGTGGGGCCTCCTAGGCCCTCAAATCCTAGCCCTGGTTTCCAATCTCAACCAAATGTTTCCGGACAAGGAATGCTAGTTGGAAGTACTATTGCAGCTTCTCGCCCTCCCAGTTCCACTGATTTGTTTGCTGGTCAGAATGGTCGCTCACAATCAGGTGCCAATTCCCAAGCTCCTAATTCAAGTGGCAGTTCTAGAAGTCAAGATGCATTTGGTCTGGCTGTATCAACACCTTCTGCACAACAAACACAACAAGCAACCATGTCATCAGTGCAACCAAATCTATCAAAATCAAATAATGCAACTTTGTCGCATGGCAACCTGCTTGAAGCCAAGATGCCTAAAGCTGTTTCAGTTGCAGGAAATGGATTTCCATCCGATTCACTCTTTGGAGATGTTTTTTCAGTTGCCTCAGTTCAACCAAATCAAAGCTCCACACCAACTATATCTTCAGCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0332B10-uFkrv/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_U_tomato" ref_id="SGN-U570325" ref_strand="+" ref_description="SGN-U570325 Tomato 200607#2 [2 ESTs aligned] (*GB) gi|147810085|emb|CAN64708.1| (e_value=6e-17) hypothetical; ">
      <seq>cgatcaaagttcctccagagaccacctgatcacttctgtcatttttagataaaaaaacttaaccttcatggtgtcttcagagatgagtagatgaccgaatcaactttttctcctccctaaactttgagcaattctattattaacttttttcaagtttttaataaattttaactcattgcattgttgaataatctccgcagaattcacatttgtgaaagagctcaatcttgacgtacaaaatgtcattgcccctcctaaaccaaaatcttcactggttcgggagaaagcatcttctttgaatgaccatgatactggaaaatcatctgctgatgctggcactgatgcaaagtcagagaagttgccaagccctggaaaaaccagagtgatgagtgatgtggagactacccatacagcaagaagttcaactaatagtccaaccaggagtaatgcagttgagagtccaacaaaggaattcgaagaatcactgaataggaaggacggtacttttgatggttctccccatgctgcccaaagtgaacactggggagctgaatctgcgttctctggggacaaaagttttgatgaatctggttggggtacatttgatacagaccttgatgcaaatgctgcatggaatatcaattctgctgctaaggtaaatggatacatcttcattttagttacc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0332B10-uFkrv/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C02HBa0332B10.1" temp_strand="+" temp_description="C02HBa0332B10.1  CU459018.10 htgs_phase:3 submitted_to_sgn_as:C04HBa0332B10 sequenced_by:sanger upload_account_name:uk">
        <position start="130818" stop="132266"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="131118" g_stop="131651" g_length="534"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="534" r_length="534" r_score="0.994"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="131652" i_stop="131815" i_length="164">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.985" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="131816" g_stop="131966" g_length="151"/>
          <reference_exon_boundary r_type="cDNA" r_start="535" r_stop="685" r_length="151" r_score="0.993"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0332B10.1" gen_strand="+" ref_id="SGN-U570325" ref_strand="+">
        <total_alignment_score>0.994</total_alignment_score>
        <cumulative_length_of_scored_exons>685</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0332B10.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-U570325" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="131118" e_stop="131651"/>
          <exon e_start="131816" e_stop="131966"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CGATCAAAGTTCCTCCAGAGACCACCTGATCACTTCTGTCATTTTTAGATAAAAAAACTTAACCTTCATGGTGTCTTCAGAGATGAGTAGATGACCGAATCAACTTTTTCTCCTCCCTAAACTTTGAGCAATTCTATTATTAACTTTTTTCAAGTTTTTAATAAATTTTAACTCATTGAATTGTTGAATAATCTCCGCAGAATTCACATTTGTGAAAGAGCTCAATCTTGACGTACAAAATGTCATTGCCCCTCCTAAACCAAAATCTTCACTGGTTCGGGAGAAAGCATCTTCTTTGAATGACCATGATACTGGAAAATCATCTGCTGATGCTGGCACTGATGCAAAGTCAGAGAAGTTGCCAAGCGCTGGTAAAACCAGAGTGATGAGTGATGTGGAGACTACCCATACAGCAAGAAGTTCAACTAATAGTCCAACCAGGAGTAATGCAGTTGAGAGTCCAACAAAGGAATTCGAAGAATCACTGAATAGGAAGGACGGTACTTTTGATGGTTCTCCCCATGCTGCCCAAAGGTAATGTGGTTGTTTTCGTCCTTTTTTGGTGTTAATCTACAGTGGTGTTATGCCTTTAAATAATGAAAGATATTTTCTGTTATTCAATTGTATTCTTTGATGAATTCAGTTTCTCTCAAGTGTTAAAGTTTCTAGAAATCTGAACTTCTGTATTACTAGTGCAGTGAACACTGGGGAGCTGAATCTGCGTTCTCTGGGGACAAAAGTTTTGATGAATCTGGTTGGGGTACATTTGATACAGACCTTGATGCAGATGCTGCATGGAATATCAATTCTGCTGCTAAGGTAAATGGATACATCTTCATTTTAGTTACC</genome_strand>
        <mrna_strand>CGATCAAAGTTCCTCCAGAGACCACCTGATCACTTCTGTCATTTTTAGATAAAAAAACTTAACCTTCATGGTGTCTTCAGAGATGAGTAGATGACCGAATCAACTTTTTCTCCTCCCTAAACTTTGAGCAATTCTATTATTAACTTTTTTCAAGTTTTTAATAAATTTTAACTCATTGCATTGTTGAATAATCTCCGCAGAATTCACATTTGTGAAAGAGCTCAATCTTGACGTACAAAATGTCATTGCCCCTCCTAAACCAAAATCTTCACTGGTTCGGGAGAAAGCATCTTCTTTGAATGACCATGATACTGGAAAATCATCTGCTGATGCTGGCACTGATGCAAAGTCAGAGAAGTTGCCAAGCCCTGGAAAAACCAGAGTGATGAGTGATGTGGAGACTACCCATACAGCAAGAAGTTCAACTAATAGTCCAACCAGGAGTAATGCAGTTGAGAGTCCAACAAAGGAATTCGAAGAATCACTGAATAGGAAGGACGGTACTTTTGATGGTTCTCCCCATGCTGCCCAAAG....................................................................................................................................................................TGAACACTGGGGAGCTGAATCTGCGTTCTCTGGGGACAAAAGTTTTGATGAATCTGGTTGGGGTACATTTGATACAGACCTTGATGCAAATGCTGCATGGAATATCAATTCTGCTGCTAAGGTAAATGGATACATCTTCATTTTAGTTACC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0332B10-uFkrv/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_U_tomato" ref_id="SGN-U602556" ref_strand="+" ref_description="SGN-U602556 Tomato 200607#2 [1 ESTs aligned] ">
      <seq>gggggtctcatgatccctttaagacatctgcggagaatcagacaccgaagagagattctgataattggaaagcattttaagatggtaatggatttccttactccggatgcaatctctttttcttttcttttttccctccatttaaaactatttttggccaggtttttaggttgtagggttagtaaattggttgtgattagatagtttttctgngtggcatgagatagcattatgataagttgnactccctaatattatttcatttagtttttttttttttttttaaaagccaggggttttattttgannttttccctttcttgnnttaattcat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0332B10-uFkrv/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C02HBa0332B10.1" temp_strand="+" temp_description="C02HBa0332B10.1  CU459018.10 htgs_phase:3 submitted_to_sgn_as:C04HBa0332B10 sequenced_by:sanger upload_account_name:uk">
        <position start="132725" stop="133651"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="133023" g_stop="133351" g_length="329"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="334" r_length="334" r_score="0.945"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0332B10.1" gen_strand="+" ref_id="SGN-U602556" ref_strand="+">
        <total_alignment_score>0.945</total_alignment_score>
        <cumulative_length_of_scored_exons>329</cumulative_length_of_scored_exons>
        <coverage percentage="0.985" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0332B10.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-U602556" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="133023" e_stop="133351"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTGGGTCTCATGATCCCTTTAAGACATCTGCGGAGAATCAGACACCGAAGAGAGATTCTGATAATTGGAAAGCATTTTAAGATGGTAATGGATTTCCTTACTCCGGATGCAATCTCTTTTTCTTTTCTTTTTTCCCTCCATTTAAAACTATTTTTGGCCAGGTTTTTAGGTTGTAGGGTTAGTAAATTGGTTGTGATTAGATAGTTTTTCTGTGTGGCATGAGATAGCATTATGATAAGTTGTACTCCCTAATATTATTTCA-TTAG--TTTTTTTTTTTTTTT-AAAGCCAGGGGTTTTATTTTGACCTTTT-CCTTTCTTGCATTAATTCAT</genome_strand>
        <mrna_strand>GGGGGTCTCATGATCCCTTTAAGACATCTGCGGAGAATCAGACACCGAAGAGAGATTCTGATAATTGGAAAGCATTTTAAGATGGTAATGGATTTCCTTACTCCGGATGCAATCTCTTTTTCTTTTCTTTTTTCCCTCCATTTAAAACTATTTTTGGCCAGGTTTTTAGGTTGTAGGGTTAGTAAATTGGTTGTGATTAGATAGTTTTTCTGNGTGGCATGAGATAGCATTATGATAAGTTGNACTCCCTAATATTATTTCATTTAGTTTTTTTTTTTTTTTTTAAAAGCCAGGGGTTTTATTTTGANNTTTTCCCTTTCTTGNNTTAATTCAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0332B10-uFkrv/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_U_tomato" ref_id="SGN-U598262" ref_strand="+" ref_description="SGN-U598262 Tomato 200607#2 [1 ESTs aligned] (*GB) gi|147806138|emb|CAN70007.1| (e_value=8e-51) hypothetical; (*ATH) AT4G38250.1 (e_value=4e-48)  Symbol: None | amino acid transporter family protein, low similarity to lysosomal amino acid transporter 1 (Rattus norvegicus) GI:14571904; contains Pfam profile PF01490: Transmembrane amino acid transporter protein | chr4:17935396-17937229 FORWARD ... ; (*SWP) sp|Q10074|YAN9_SCHPO (e_value=6e-12) Putative amino acid permease C3H1.09c OS=Schizosaccharomyces pombe GN=SPAC3H1.09c; ">
      <seq>gtacagatttttcagttaacaaatctggtcttctgcaattttctctctgcagccattttctcatcgttaaaactccctctcaactccactacacaccattttctaactgtcaaacattttctaacactaccatttcatctgcaaatcgattattgagtagttaaaatcaataaagttttgatcttttctgttttttggcacttaaaattggattcttgattttcatttggttcaatggggtttggtaaaaatagagcaagttcatcttcccatgttctgcgaatcccaagagaagatacaccacttttagcaaacacccaacacctttcttcatcttccaaaacttttgctaatgtttttatagcagtagttggagctggagttcttggccttccttatagtttcaagaaaacaggatggtttatgggttctttaatgcttttatcagtatcctttcttacttactattgtatgatgcttctgatctattcgaggcgtaagcttgaatcccattacaaagtgatcaagatttcatcttttggtgatttgggatatgctgtttgtggatcaataggtagatgtactgttgatgctatgattgttctttcccaagctggattttgcatcagttacttgatttttatagccaatactttagaacacttgttcaattattcaaatc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0332B10-uFkrv/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C02HBa0332B10.1" temp_strand="-" temp_description="C02HBa0332B10.1  CU459018.10 htgs_phase:3 submitted_to_sgn_as:C04HBa0332B10 sequenced_by:sanger upload_account_name:uk">
        <position start="135870" stop="134589"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="135570" g_stop="134889" g_length="682"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="682" r_length="682" r_score="0.994"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0332B10.1" gen_strand="-" ref_id="SGN-U598262" ref_strand="+">
        <total_alignment_score>0.994</total_alignment_score>
        <cumulative_length_of_scored_exons>682</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0332B10.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-U598262" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="135570" e_stop="134889"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTACAGATTTTTCAGTTAACAAATCTGGTCTTCTGCAATTTTCTCTCTGCAGCCATTTTCTCATCTTTAAAACTCCCTCTCAACTCCACTACACACCATTTTCTAACTGTCAAACATTTTCTAACACTACCGTTTCATCTGCAAATCGATTATTGAGTAGTTAAAATCAATAAAGTTTTGATCTTTTCTGTTTTTTGGCACTTAAAATTGGATTCTTGATTTTCATTTGGTTCAATGGGGTTTGGTAAAAATAGAGCAAGTTCATCTTCCCATGTTCTGCGAATCCCAAGAGAAGATACACCACTTTTAGCAAACACCCAACACCTTTCTTCATCTTCCAAAACTTTTGCTAATGTTTTTATAGCAGTAGTTGGAGCTGGAGTTCTTGGCCTTCCTTATAGTTTCAAGAAAACAGGATGGTTTATGGGTTCTTTAATGCTTCTATCAGTATCCTTTCTTACTTACTATTGTATGATGCTTCTGATCTATTCGAGGCGTAAGCTTGAATCCCATTACAAAGTTATCAAGATTTCATCTTTTGGTGATTTGGGATATGCTGTTTGTGGATCAATAGGTAGATGTACTGTTGATGCTATGATTGTTCTTTCCCAAGCTGGATTTTGCATCAGTTACTTGATTTTTATAGCCAATACTTTAGAACACTTGTTCAATTATTCAAATC</genome_strand>
        <mrna_strand>GTACAGATTTTTCAGTTAACAAATCTGGTCTTCTGCAATTTTCTCTCTGCAGCCATTTTCTCATCGTTAAAACTCCCTCTCAACTCCACTACACACCATTTTCTAACTGTCAAACATTTTCTAACACTACCATTTCATCTGCAAATCGATTATTGAGTAGTTAAAATCAATAAAGTTTTGATCTTTTCTGTTTTTTGGCACTTAAAATTGGATTCTTGATTTTCATTTGGTTCAATGGGGTTTGGTAAAAATAGAGCAAGTTCATCTTCCCATGTTCTGCGAATCCCAAGAGAAGATACACCACTTTTAGCAAACACCCAACACCTTTCTTCATCTTCCAAAACTTTTGCTAATGTTTTTATAGCAGTAGTTGGAGCTGGAGTTCTTGGCCTTCCTTATAGTTTCAAGAAAACAGGATGGTTTATGGGTTCTTTAATGCTTTTATCAGTATCCTTTCTTACTTACTATTGTATGATGCTTCTGATCTATTCGAGGCGTAAGCTTGAATCCCATTACAAAGTGATCAAGATTTCATCTTTTGGTGATTTGGGATATGCTGTTTGTGGATCAATAGGTAGATGTACTGTTGATGCTATGATTGTTCTTTCCCAAGCTGGATTTTGCATCAGTTACTTGATTTTTATAGCCAATACTTTAGAACACTTGTTCAATTATTCAAATC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
    <total_number_ESTs_reported>16</total_number_ESTs_reported>
    </alignment_module>
  <PGL_module xmlns="http://www.genomethreader.org/GTH_output/PGL_module/">
    <predicted_gene_location>
      <PGL_line PGL_serial="1" PGL_strand="-" PGL_start="37371" PGL_stop="33446"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="37371" e_stop="37319"/>
            <exon e_start="36505" e_stop="36431"/>
            <exon e_start="36308" e_stop="36248"/>
            <exon e_start="35468" e_stop="35382"/>
            <exon e_start="35073" e_stop="34975"/>
            <exon e_start="34880" e_stop="34775"/>
            <exon e_start="34683" e_stop="34607"/>
            <exon e_start="34435" e_stop="34328"/>
            <exon e_start="33774" e_stop="33688"/>
            <exon e_start="33565" e_stop="33446"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.991" acc_prob="0.000" e_score="0.906"/>
          <exon-intron don_prob="1.000" acc_prob="0.823" e_score="0.920"/>
          <exon-intron don_prob="0.982" acc_prob="0.999" e_score="0.951"/>
          <exon-intron don_prob="0.999" acc_prob="0.981" e_score="0.920"/>
          <exon-intron don_prob="0.674" acc_prob="0.991" e_score="0.909"/>
          <exon-intron don_prob="0.986" acc_prob="0.984" e_score="0.962"/>
          <exon-intron don_prob="0.998" acc_prob="0.201" e_score="0.987"/>
          <exon-intron don_prob="0.999" acc_prob="0.992" e_score="0.954"/>
          <exon-intron don_prob="0.934" acc_prob="0.962" e_score="0.977"/>
          <exon-only e_score="0.900"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.906">
            <gDNA_exon_boundary e_start="37371" e_stop="37319" e_length="53"/>
          </exon>
          <intron i_serial="1" don_prob="0.991" acc_prob="0.000">
            <gDNA_intron_boundary i_start="37318" i_stop="36506" i_length="813"/>
          </intron>
          <exon e_serial="2" e_score="0.920">
            <gDNA_exon_boundary e_start="36505" e_stop="36431" e_length="75"/>
          </exon>
          <intron i_serial="2" don_prob="1.000" acc_prob="0.823">
            <gDNA_intron_boundary i_start="36430" i_stop="36309" i_length="122"/>
          </intron>
          <exon e_serial="3" e_score="0.951">
            <gDNA_exon_boundary e_start="36308" e_stop="36248" e_length="61"/>
          </exon>
          <intron i_serial="3" don_prob="0.982" acc_prob="0.999">
            <gDNA_intron_boundary i_start="36247" i_stop="35469" i_length="779"/>
          </intron>
          <exon e_serial="4" e_score="0.920">
            <gDNA_exon_boundary e_start="35468" e_stop="35382" e_length="87"/>
          </exon>
          <intron i_serial="4" don_prob="0.999" acc_prob="0.981">
            <gDNA_intron_boundary i_start="35381" i_stop="35074" i_length="308"/>
          </intron>
          <exon e_serial="5" e_score="0.909">
            <gDNA_exon_boundary e_start="35073" e_stop="34975" e_length="99"/>
          </exon>
          <intron i_serial="5" don_prob="0.674" acc_prob="0.991">
            <gDNA_intron_boundary i_start="34974" i_stop="34881" i_length="94"/>
          </intron>
          <exon e_serial="6" e_score="0.962">
            <gDNA_exon_boundary e_start="34880" e_stop="34775" e_length="106"/>
          </exon>
          <intron i_serial="6" don_prob="0.986" acc_prob="0.984">
            <gDNA_intron_boundary i_start="34774" i_stop="34684" i_length="91"/>
          </intron>
          <exon e_serial="7" e_score="0.987">
            <gDNA_exon_boundary e_start="34683" e_stop="34607" e_length="77"/>
          </exon>
          <intron i_serial="7" don_prob="0.998" acc_prob="0.201">
            <gDNA_intron_boundary i_start="34606" i_stop="34436" i_length="171"/>
          </intron>
          <exon e_serial="8" e_score="0.954">
            <gDNA_exon_boundary e_start="34435" e_stop="34328" e_length="108"/>
          </exon>
          <intron i_serial="8" don_prob="0.999" acc_prob="0.992">
            <gDNA_intron_boundary i_start="34327" i_stop="33775" i_length="553"/>
          </intron>
          <exon e_serial="9" e_score="0.977">
            <gDNA_exon_boundary e_start="33774" e_stop="33688" e_length="87"/>
          </exon>
          <intron i_serial="9" don_prob="0.934" acc_prob="0.962">
            <gDNA_intron_boundary i_start="33687" i_stop="33566" i_length="122"/>
          </intron>
          <exon e_serial="10" e_score="0.900">
            <gDNA_exon_boundary e_start="33565" e_stop="33446" e_length="120"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="37371" stop="37319"/>
              <exon start="36505" stop="36431"/>
              <exon start="36308" stop="36248"/>
              <exon start="35468" stop="35382"/>
              <exon start="35073" stop="34975"/>
              <exon start="34880" stop="34775"/>
              <exon start="34683" stop="34607"/>
              <exon start="34435" stop="34328"/>
              <exon start="33774" stop="33688"/>
              <exon start="33565" stop="33446"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U595650" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="1" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>AATCTTCTAAGTCCACTTCCATTCAATAAAAAACAATAATCAATGGCTTCCCC : GAGTGTAAAACACCTTTTACCACCATCTCTGGATTCTACTTCCCAACCCCCATCACTCTTCGATGGAACTACCAG : GTTGTATATGAATTATCAATGCCCCTATTCTCAACATGTGTGGATTACAAGGAATGTTAAG : GGTTTGCAAGACATGATCAAGTTAGTTCCAATTAATCAACAGAACAGGCCTGATTGGTACAAGGAAAAAGTTTATCCCAAAAATAAG : GTGCCTTCCCTAAAGCACAACAACAAGGTGATCAGAGAGAGTTTGGTTCTGGTTAAATATGTTGATTGTAACTTTGAAGGACCATCATTCATGCCGGAT : GACCAGGAAAAGCGAAAATTTGCTGAAGAATTGATAGCTTATAGTGACACTACATTCGTCCCAGAAGTATACTGATCTTTCGCAAATGATGCACGGAAACTGGCTG : GTGCACAATTTGATTACCTAGAAAAAGCTCTCCACAAATTCGACGATGGGCCTTTCTTCCTTGGTCAATTCAGTCAG : GTTGACATAATATATGCTCCATTTATCTAAAGTTTCCATGTTTTTATGCCAGAGGGGTTTAACTATGACATCACAACCGAGAGGCCTAAGCTAGCCAAGTGGATTGAG : GAAATGAACAATCTTGACGGATACAAGCAAACAAAAGTCTTGGAACAAGAGAAAATGGTTGAGTACTACAAGAATCGCTTTCTGCCG : AAAGCTTGAAACTTCAAAAATGCATTGTCAATCTCAGATGAAAGTTACAGGGGCTAGGACTTTGGTATGAAATATGTTATGGAGTTCTATAATAATATGCACCAGCAATAATTTGCTCTA</gDNA_template>
            <first_frame> N  L  L  S  P  L  P  F  N  K  K  Q  *  S  M  A  S  P :   S  V  K  H  L  L  P  P  S  L  D  S  T  S  Q  P  P  S  L  F  D  G  T  T  R :   L  Y  M  N  Y  Q  C  P  Y  S  Q  H  V  W  I  T  R  N  V  K  :  G  L  Q  D  M  I  K  L  V  P  I  N  Q  Q  N  R  P  D  W  Y  K  E  K  V  Y  P  K  N  K  :  V  P  S  L  K  H  N  N  K  V  I  R  E  S  L  V  L  V  K  Y  V  D  C  N  F  E  G  P  S  F  M  P  D  :  D  Q  E  K  R  K  F  A  E  E  L  I  A  Y  S  D  T  T  F  V  P  E  V  Y  *  S  F  A  N  D  A  R  K  L  A   : G  A  Q  F  D  Y  L  E  K  A  L  H  K  F  D  D  G  P  F  F  L  G  Q  F  S  Q  :  V  D  I  I  Y  A  P  F  I  *  S  F  H  V  F  M  P  E  G  F  N  Y  D  I  T  T  E  R  P  K  L  A  K  W  I  E  :  E  M  N  N  L  D  G  Y  K  Q  T  K  V  L  E  Q  E  K  M  V  E  Y  Y  K  N  R  F  L  P  :  K  A  *  N  F  K  N  A  L  S  I  S  D  E  S  Y  R  G  *  D  F  G  M  K  Y  V  M  E  F  Y  N  N  M  H  Q  Q  *  F  A  L </first_frame>
            <second_frame>  I  F  *  V  H  F  H  S  I  K  N  N  N  Q  W  L  P   : R  V  *  N  T  F  Y  H  H  L  W  I  L  L  P  N  P  H  H  S  S  M  E  L  P   : G  C  I  *  I  I  N  A  P  I  L  N  M  C  G  L  Q  G  M  L  R :   V  C  K  T  *  S  S  *  F  Q  L  I  N  R  T  G  L  I  G  T  R  K  K  F  I  P  K  I  R :   C  L  P  *  S  T  T  T  R  *  S  E  R  V  W  F  W  L  N  M  L  I  V  T  L  K  D  H  H  S  C  R  M :   T  R  K  S  E  N  L  L  K  N  *  *  L  I  V  T  L  H  S  S  Q  K  Y  T  D  L  S  Q  M  M  H  G  N  W  L  :  V  H  N  L  I  T  *  K  K  L  S  T  N  S  T  M  G  L  S  S  L  V  N  S  V  R :   L  T  *  Y  M  L  H  L  S  K  V  S  M  F  L  C  Q  R  G  L  T  M  T  S  Q  P  R  G  L  S  *  P  S  G  L  R :   K  *  T  I  L  T  D  T  S  K  Q  K  S  W  N  K  R  K  W  L  S  T  T  R  I  A  F  C  R :   K  L  E  T  S  K  M  H  C  Q  S  Q  M  K  V  T  G  A  R  T  L  V  *  N  M  L  W  S  S  I  I  I  C  T  S  N  N  L  L   </second_frame>
            <third_frame>   S  S  K  S  T  S  I  Q  *  K  T  I  I  N  G  F  P  :  E  C  K  T  P  F  T  T  I  S  G  F  Y  F  P  T  P  I  T  L  R  W  N  Y  Q  :  V  V  Y  E  L  S  M  P  L  F  S  T  C  V  D  Y  K  E  C  *   : G  F  A  R  H  D  Q  V  S  S  N  *  S  T  E  Q  A  *  L  V  Q  G  K  S  L  S  Q  K  *   : G  A  F  P  K  A  Q  Q  Q  G  D  Q  R  E  F  G  S  G  *  I  C  *  L  *  L  *  R  T  I  I  H  A  G   : *  P  G  K  A  K  I  C  *  R  I  D  S  L  *  *  H  Y  I  R  P  R  S  I  L  I  F  R  K  *  C  T  E  T  G  W :   C  T  I  *  L  P  R  K  S  S  P  Q  I  R  R  W  A  F  L  P  W  S  I  Q  S   : G  *  H  N  I  C  S  I  Y  L  K  F  P  C  F  Y  A  R  G  V  *  L  *  H  H  N  R  E  A  *  A  S  Q  V  D  *   : G  N  E  Q  S  *  R  I  Q  A  N  K  S  L  G  T  R  E  N  G  *  V  L  Q  E  S  L  S  A   : E  S  L  K  L  Q  K  C  I  V  N  L  R  *  K  L  Q  G  L  G  L  W  Y  E  I  C  Y  G  V  L  *  *  Y  A  P  A  I  I  C  S  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02HBa0332B10.1" strand="-"/>
                <serials PGL_serial="1" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="37332" stop="37319"/>
                    <exon start="36505" stop="36431"/>
                    <exon start="36308" stop="36248"/>
                    <exon start="35468" stop="35382"/>
                    <exon start="35073" stop="34975"/>
                    <exon start="34880" stop="34806"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>408</number_coding_nucleotides>
                  <number_encoded_amino_acids>136</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>SMASPSVKHLLPPSLDSTSQPPSLFDGTTRLYMNYQCPYSQHVWITRNVKGLQDMIKLVPINQQNRPDWYKEKVYPKNKVPSLKHNNKVIRESLVLVKYVDCNFEGPSFMPDDQEKRKFAEELIAYSDTTFVPEVY*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="2" PGL_strand="+" PGL_start="40423" PGL_stop="40967"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="40423" e_stop="40967"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.908"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.908">
            <gDNA_exon_boundary e_start="40423" e_stop="40967" e_length="545"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="40423" stop="40967"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U602621" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="2" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>TTATTTTCACTACTTTAAGTTCGCTATACAACTCTTAGGATCACGATAGGACTTTCTTAGCTTGTAACATAGGCTCAGAGTCAGGTATGGTATATTTAGGTATACTTTAGTGACTTTTTGCCCTCCTTGACATATCGGCTAAACATACCATTTTCTATCATTTTATTTCCCCAATTTCTCATATTCTTTCACCTTGCTATTTTCCCTTCTTTCTTCATTTGTGTAAGTGATTCTCTTCTTTTCTTGCTTGTATTTCTTTTGTATGTGTCTATATATATATATATATATATATATATATATATATATATATTACATTTCTTTCAACTAATTCTTGAGTCACTTTACTTTTGTTCTTTCTCTCTCTTTGTTCTTTCAACCCCACTTTCCAGAGCATTCCTCATAATAGCCACCCTCAACTCATGGTTTTGCCATGAGTCAAAGTACACAATACCCAAAGTTGGGTCAGGGCCATAAAAAAGGGTTGTTTACTCCATTAGCCACCCTCAACTTATGCTTTTGGCATAAGCTGAGGTGCACATATCCAA</gDNA_template>
            <first_frame> L  F  S  L  L  *  V  R  Y  T  T  L  R  I  T  I  G  L  S  *  L  V  T  *  A  Q  S  Q  V  W  Y  I  *  V  Y  F  S  D  F  L  P  S  L  T  Y  R  L  N  I  P  F  S  I  I  L  F  P  Q  F  L  I  F  F  H  L  A  I  F  P  S  F  F  I  C  V  S  D  S  L  L  F  L  L  V  F  L  L  Y  V  S  I  Y  I  Y  I  Y  I  Y  I  Y  I  Y  I  L  H  F  F  Q  L  I  L  E  S  L  Y  F  C  S  F  S  L  F  V  L  S  T  P  L  S  R  A  F  L  I  I  A  T  L  N  S  W  F  C  H  E  S  K  Y  T  I  P  K  V  G  S  G  P  *  K  R  V  V  Y  S  I  S  H  P  Q  L  M  L  L  A  *  A  E  V  H  I  S   </first_frame>
            <second_frame>  Y  F  H  Y  F  K  F  A  I  Q  L  L  G  S  R  *  D  F  L  S  L  *  H  R  L  R  V  R  Y  G  I  F  R  Y  T  L  V  T  F  C  P  P  *  H  I  G  *  T  Y  H  F  L  S  F  Y  F  P  N  F  S  Y  S  F  T  L  L  F  S  L  L  S  S  F  V  *  V  I  L  F  F  S  C  L  Y  F  F  C  M  C  L  Y  I  Y  I  Y  I  Y  I  Y  I  Y  I  Y  Y  I  S  F  N  *  F  L  S  H  F  T  F  V  L  S  L  S  L  F  F  Q  P  H  F  P  E  H  S  S  *  *  P  P  S  T  H  G  F  A  M  S  Q  S  T  Q  Y  P  K  L  G  Q  G  H  K  K  G  L  F  T  P  L  A  T  L  N  L  C  F  W  H  K  L  R  C  T  Y  P  </second_frame>
            <third_frame>   I  F  T  T  L  S  S  L  Y  N  S  *  D  H  D  R  T  F  L  A  C  N  I  G  S  E  S  G  M  V  Y  L  G  I  L  *  *  L  F  A  L  L  D  I  S  A  K  H  T  I  F  Y  H  F  I  S  P  I  S  H  I  L  S  P  C  Y  F  P  F  F  L  H  L  C  K  *  F  S  S  F  L  A  C  I  S  F  V  C  V  Y  I  Y  I  Y  I  Y  I  Y  I  Y  I  Y  I  T  F  L  S  T  N  S  *  V  T  L  L  L  F  F  L  S  L  C  S  F  N  P  T  F  Q  S  I  P  H  N  S  H  P  Q  L  M  V  L  P  *  V  K  V  H  N  T  Q  S  W  V  R  A  I  K  K  G  C  L  L  H  *  P  P  S  T  Y  A  F  G  I  S  *  G  A  H  I  Q </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02HBa0332B10.1" strand="+"/>
                <serials PGL_serial="2" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="40522" stop="40896"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>372</number_coding_nucleotides>
                  <number_encoded_amino_acids>124</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>VYFSDFLPSLTYRLNIPFSIILFPQFLIFFHLAIFPSFFICVSDSLLFLLVFLLYVSIYIYIYIYIYIYILHFFQLILESLYFCSFSLFVLSTPLSRAFLIIATLNSWFCHESKYTIPKVGSGP*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="3" PGL_strand="-" PGL_start="75037" PGL_stop="69527"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="75037" e_stop="74682"/>
            <exon e_start="74310" e_stop="73982"/>
            <exon e_start="72477" e_stop="72342"/>
            <exon e_start="72258" e_stop="72116"/>
            <exon e_start="70942" e_stop="70819"/>
            <exon e_start="70225" e_stop="69527"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.999" acc_prob="0.988" e_score="1.000"/>
          <exon-intron don_prob="0.997" acc_prob="0.986" e_score="1.000"/>
          <exon-intron don_prob="0.938" acc_prob="0.999" e_score="1.000"/>
          <exon-intron don_prob="0.898" acc_prob="0.975" e_score="1.000"/>
          <exon-intron don_prob="1.000" acc_prob="0.855" e_score="1.000"/>
          <exon-only e_score="0.999"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="75037" e_stop="74682" e_length="356"/>
          </exon>
          <intron i_serial="1" don_prob="0.999" acc_prob="0.988">
            <gDNA_intron_boundary i_start="74681" i_stop="74311" i_length="371"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="74310" e_stop="73982" e_length="329"/>
          </exon>
          <intron i_serial="2" don_prob="0.997" acc_prob="0.986">
            <gDNA_intron_boundary i_start="73981" i_stop="72478" i_length="1504"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="72477" e_stop="72342" e_length="136"/>
          </exon>
          <intron i_serial="3" don_prob="0.938" acc_prob="0.999">
            <gDNA_intron_boundary i_start="72341" i_stop="72259" i_length="83"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="72258" e_stop="72116" e_length="143"/>
          </exon>
          <intron i_serial="4" don_prob="0.898" acc_prob="0.975">
            <gDNA_intron_boundary i_start="72115" i_stop="70943" i_length="1173"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="70942" e_stop="70819" e_length="124"/>
          </exon>
          <intron i_serial="5" don_prob="1.000" acc_prob="0.855">
            <gDNA_intron_boundary i_start="70818" i_stop="70226" i_length="593"/>
          </intron>
          <exon e_serial="6" e_score="0.999">
            <gDNA_exon_boundary e_start="70225" e_stop="69527" e_length="699"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="75037" stop="74682"/>
              <exon start="74310" stop="73982"/>
              <exon start="72477" stop="72342"/>
              <exon start="72258" stop="72116"/>
              <exon start="70942" stop="70819"/>
              <exon start="70225" stop="69527"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U581803" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="3" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>GAGATTGTCATTGACACCATCACATAAACTTCAACTATCAGCTAAATTAGGAAACCACACTGTAAAATCCCAGCAATTTACAGTTGAAAATTTTGGCGCATTATATCTTATAATATAATATGAAGGAATCAACAACAATATTAGTAGCTTTTCCCTAAATTCCACCGCTTTTTGTCAAAAGTTTCAACTTTGCTCTAAAAATCAAGATTTCTCCTTTTGAATGATGGTAGCAATTTAGTATTGAGCTGAGAATAAGAAGAAAGTGTAAAAATTGATGGGGAATTGTTTTGGATCAGAGAATCTTGATCCTAATCCTAGTAACAAAAGCAACTCATCAACTAGACCTTCTACCCCAG : ATACATCAAAGAACTACAGTGGTGGTGTTGGATTTTCGACTAGTAGTAGTACTGGGCGTAGCCGTTTTTCAGCAGCTGCAAGCGAGGATTCATGTTCGAATGGAGAAATATTGCCTACTCCAAATTTGAAGACTTACAGTTTTTCTGATCTGAAGGCTGCCACAAGAAATTTCAAGTCTGATACAGTTTTGGGGGTGGGAGGCTTTGGGACTGTATTTAAAGGATGGGTCGATGAGAAGACGCTTACTCCAACTAAAGTTGGAACTGGGATGGTTGTTGCCATCAAGAAGTTGAACTCAGAGAGCATGCAGGGATTTGAAGAGTGGCAG : GCAGAAGTTAACTTCTTAGGAAGGCTTTCACACCCAAACCTTGTTAAATTGTTGGGATATTGTTGGGAAGACAAGGAACTGTTACTTGTATATGAATTCATGCCAAAGGGAAGCTTGGAGAACCATCTTTTCAGAA : GGAGCACAGCTATTGAACCACTTTCTTGGGAGTTGCGGCTCAAAATTGCCATAGGAGCGGCACGAGGTTTAGCTTTTCTACATTCTTCAGAAAAGCAGATCATTTACAGAGATTTCAAGGCCTCCAATATACTTCTCGATGGG : AGTTACCATGCAAAGTTATCCGATTTTGGCTTAGCTAAAGTTGGGCCTTCAGCTGGGAACTCACATGTGACTACTCGTATCATGGGAACATATGGTTATGCTGCTCCTGAATACATTGCAACAG : GTCATCTGTATGTAAAAAGTGATGTATATGGATTTGGTGTTGTCTTGCTTGAGCTGTTAACAGGCTTACGAGCACTTGACACAAAACGACCTGGCGGACAGCATAATTTGGTGGACTGGATGAAACCGATGCTTTCTAACAAAAGGAAGCTGAAGTCCATTATGGACGCCCGAATGGAAGGCCAATATAGTTCAAAGGCAGCAATACTTACTGCTCAGCTTACTATAAAATGCCTAGAAGGAGAACCTAAGAAGAGGCCTTCTATGAAAGAAGTAGTGGAAGTATTGGAACAAGTTGAATTGATAAAGGAGAAATCAAAACCTTCCAAAAGCAAATCCGAGTCTTCATCTCATCGATACAAGCAGTCACCGAGAAGTTATCCTTCTCCACGTGGTGCAAGCAACCATGGATCCGGAGCCGGATCTGGAAGATGACAGGTACAACTGGAAAGGCAAACGCGAGCTGCTGAAAAATGAGTTTGTTTATACATTTAATTGTATTGAATTTGTTGTAGTCCAATTTGGTTTAATCATTGTTTTGGATTACAAATTTTGTAAAATTGTCTGTCACATCTGTACTCCATGGGAATAAATGTATTTCTATCGTTTATAAGAAAACTGATTTCATTTGTGGAAGGTATGATTACAGCTAAGATTAACAGGCAGTCCAGCCTGTTGAAATGTAAATTTGTGTAAGCCA</gDNA_template>
            <first_frame> E  I  V  I  D  T  I  T  *  T  S  T  I  S  *  I  R  K  P  H  C  K  I  P  A  I  Y  S  *  K  F  W  R  I  I  S  Y  N  I  I  *  R  N  Q  Q  Q  Y  *  *  L  F  P  K  F  H  R  F  L  S  K  V  S  T  L  L  *  K  S  R  F  L  L  L  N  D  G  S  N  L  V  L  S  *  E  *  E  E  S  V  K  I  D  G  E  L  F  W  I  R  E  S  *  S  *  S  *  *  Q  K  Q  L  I  N  *  T  F  Y  P  R :   Y  I  K  E  L  Q  W  W  C  W  I  F  D  *  *  *  Y  W  A  *  P  F  F  S  S  C  K  R  G  F  M  F  E  W  R  N  I  A  Y  S  K  F  E  D  L  Q  F  F  *  S  E  G  C  H  K  K  F  Q  V  *  Y  S  F  G  G  G  R  L  W  D  C  I  *  R  M  G  R  *  E  D  A  Y  S  N  *  S  W  N  W  D  G  C  C  H  Q  E  V  E  L  R  E  H  A  G  I  *  R  V  A   : G  R  S  *  L  L  R  K  A  F  T  P  K  P  C  *  I  V  G  I  L  L  G  R  Q  G  T  V  T  C  I  *  I  H  A  K  G  K  L  G  E  P  S  F  Q  K :   E  H  S  Y  *  T  T  F  L  G  V  A  A  Q  N  C  H  R  S  G  T  R  F  S  F  S  T  F  F  R  K  A  D  H  L  Q  R  F  Q  G  L  Q  Y  T  S  R  W   : E  L  P  C  K  V  I  R  F  W  L  S  *  S  W  A  F  S  W  E  L  T  C  D  Y  S  Y  H  G  N  I  W  L  C  C  S  *  I  H  C  N  R :   S  S  V  C  K  K  *  C  I  W  I  W  C  C  L  A  *  A  V  N  R  L  T  S  T  *  H  K  T  T  W  R  T  A  *  F  G  G  L  D  E  T  D  A  F  *  Q  K  E  A  E  V  H  Y  G  R  P  N  G  R  P  I  *  F  K  G  S  N  T  Y  C  S  A  Y  Y  K  M  P  R  R  R  T  *  E  E  A  F  Y  E  R  S  S  G  S  I  G  T  S  *  I  D  K  G  E  I  K  T  F  Q  K  Q  I  R  V  F  I  S  S  I  Q  A  V  T  E  K  L  S  F  S  T  W  C  K  Q  P  W  I  R  S  R  I  W  K  M  T  G  T  T  G  K  A  N  A  S  C  *  K  M  S  L  F  I  H  L  I  V  L  N  L  L  *  S  N  L  V  *  S  L  F  W  I  T  N  F  V  K  L  S  V  T  S  V  L  H  G  N  K  C  I  S  I  V  Y  K  K  T  D  F  I  C  G  R  Y  D  Y  S  *  D  *  Q  A  V  Q  P  V  E  M  *  I  C  V  S   </first_frame>
            <second_frame>  R  L  S  L  T  P  S  H  K  L  Q  L  S  A  K  L  G  N  H  T  V  K  S  Q  Q  F  T  V  E  N  F  G  A  L  Y  L  I  I  *  Y  E  G  I  N  N  N  I  S  S  F  S  L  N  S  T  A  F  C  Q  K  F  Q  L  C  S  K  N  Q  D  F  S  F  *  M  M  V  A  I  *  Y  *  A  E  N  K  K  K  V  *  K  L  M  G  N  C  F  G  S  E  N  L  D  P  N  P  S  N  K  S  N  S  S  T  R  P  S  T  P   : D  T  S  K  N  Y  S  G  G  V  G  F  S  T  S  S  S  T  G  R  S  R  F  S  A  A  A  S  E  D  S  C  S  N  G  E  I  L  P  T  P  N  L  K  T  Y  S  F  S  D  L  K  A  A  T  R  N  F  K  S  D  T  V  L  G  V  G  G  F  G  T  V  F  K  G  W  V  D  E  K  T  L  T  P  T  K  V  G  T  G  M  V  V  A  I  K  K  L  N  S  E  S  M  Q  G  F  E  E  W  Q  :  A  E  V  N  F  L  G  R  L  S  H  P  N  L  V  K  L  L  G  Y  C  W  E  D  K  E  L  L  L  V  Y  E  F  M  P  K  G  S  L  E  N  H  L  F  R   : R  S  T  A  I  E  P  L  S  W  E  L  R  L  K  I  A  I  G  A  A  R  G  L  A  F  L  H  S  S  E  K  Q  I  I  Y  R  D  F  K  A  S  N  I  L  L  D  G  :  S  Y  H  A  K  L  S  D  F  G  L  A  K  V  G  P  S  A  G  N  S  H  V  T  T  R  I  M  G  T  Y  G  Y  A  A  P  E  Y  I  A  T   : G  H  L  Y  V  K  S  D  V  Y  G  F  G  V  V  L  L  E  L  L  T  G  L  R  A  L  D  T  K  R  P  G  G  Q  H  N  L  V  D  W  M  K  P  M  L  S  N  K  R  K  L  K  S  I  M  D  A  R  M  E  G  Q  Y  S  S  K  A  A  I  L  T  A  Q  L  T  I  K  C  L  E  G  E  P  K  K  R  P  S  M  K  E  V  V  E  V  L  E  Q  V  E  L  I  K  E  K  S  K  P  S  K  S  K  S  E  S  S  S  H  R  Y  K  Q  S  P  R  S  Y  P  S  P  R  G  A  S  N  H  G  S  G  A  G  S  G  R  *  Q  V  Q  L  E  R  Q  T  R  A  A  E  K  *  V  C  L  Y  I  *  L  Y  *  I  C  C  S  P  I  W  F  N  H  C  F  G  L  Q  I  L  *  N  C  L  S  H  L  Y  S  M  G  I  N  V  F  L  S  F  I  R  K  L  I  S  F  V  E  G  M  I  T  A  K  I  N  R  Q  S  S  L  L  K  C  K  F  V  *  A  </second_frame>
            <third_frame>   D  C  H  *  H  H  H  I  N  F  N  Y  Q  L  N  *  E  T  T  L  *  N  P  S  N  L  Q  L  K  I  L  A  H  Y  I  L  *  Y  N  M  K  E  S  T  T  I  L  V  A  F  P  *  I  P  P  L  F  V  K  S  F  N  F  A  L  K  I  K  I  S  P  F  E  *  W  *  Q  F  S  I  E  L  R  I  R  R  K  C  K  N  *  W  G  I  V  L  D  Q  R  I  L  I  L  I  L  V  T  K  A  T  H  Q  L  D  L  L  P  Q  :  I  H  Q  R  T  T  V  V  V  L  D  F  R  L  V  V  V  L  G  V  A  V  F  Q  Q  L  Q  A  R  I  H  V  R  M  E  K  Y  C  L  L  Q  I  *  R  L  T  V  F  L  I  *  R  L  P  Q  E  I  S  S  L  I  Q  F  W  G  W  E  A  L  G  L  Y  L  K  D  G  S  M  R  R  R  L  L  Q  L  K  L  E  L  G  W  L  L  P  S  R  S  *  T  Q  R  A  C  R  D  L  K  S  G  R :   Q  K  L  T  S  *  E  G  F  H  T  Q  T  L  L  N  C  W  D  I  V  G  K  T  R  N  C  Y  L  Y  M  N  S  C  Q  R  E  A  W  R  T  I  F  S  E  :  G  A  Q  L  L  N  H  F  L  G  S  C  G  S  K  L  P  *  E  R  H  E  V  *  L  F  Y  I  L  Q  K  S  R  S  F  T  E  I  S  R  P  P  I  Y  F  S  M  G :   V  T  M  Q  S  Y  P  I  L  A  *  L  K  L  G  L  Q  L  G  T  H  M  *  L  L  V  S  W  E  H  M  V  M  L  L  L  N  T  L  Q  Q  :  V  I  C  M  *  K  V  M  Y  M  D  L  V  L  S  C  L  S  C  *  Q  A  Y  E  H  L  T  Q  N  D  L  A  D  S  I  I  W  W  T  G  *  N  R  C  F  L  T  K  G  S  *  S  P  L  W  T  P  E  W  K  A  N  I  V  Q  R  Q  Q  Y  L  L  L  S  L  L  *  N  A  *  K  E  N  L  R  R  G  L  L  *  K  K  *  W  K  Y  W  N  K  L  N  *  *  R  R  N  Q  N  L  P  K  A  N  P  S  L  H  L  I  D  T  S  S  H  R  E  V  I  L  L  H  V  V  Q  A  T  M  D  P  E  P  D  L  E  D  D  R  Y  N  W  K  G  K  R  E  L  L  K  N  E  F  V  Y  T  F  N  C  I  E  F  V  V  V  Q  F  G  L  I  I  V  L  D  Y  K  F  C  K  I  V  C  H  I  C  T  P  W  E  *  M  Y  F  Y  R  L  *  E  N  *  F  H  L  W  K  V  *  L  Q  L  R  L  T  G  S  P  A  C  *  N  V  N  L  C  K  P </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02HBa0332B10.1" strand="-"/>
                <serials PGL_serial="3" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="74769" stop="74682"/>
                    <exon start="74310" stop="73982"/>
                    <exon start="72477" stop="72342"/>
                    <exon start="72258" stop="72116"/>
                    <exon start="70942" stop="70819"/>
                    <exon start="70225" stop="69792"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>1251</number_coding_nucleotides>
                  <number_encoded_amino_acids>417</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>KLMGNCFGSENLDPNPSNKSNSSTRPSTPDTSKNYSGGVGFSTSSSTGRSRFSAAASEDSCSNGEILPTPNLKTYSFSDLKAATRNFKSDTVLGVGGFGTVFKGWVDEKTLTPTKVGTGMVVAIKKLNSESMQGFEEWQAEVNFLGRLSHPNLVKLLGYCWEDKELLLVYEFMPKGSLENHLFRRSTAIEPLSWELRLKIAIGAARGLAFLHSSEKQIIYRDFKASNILLDGSYHAKLSDFGLAKVGPSAGNSHVTTRIMGTYGYAAPEYIATGHLYVKSDVYGFGVVLLELLTGLRALDTKRPGGQHNLVDWMKPMLSNKRKLKSIMDARMEGQYSSKAAILTAQLTIKCLEGEPKKRPSMKEVVEVLEQVELIKEKSKPSKSKSESSSHRYKQSPRSYPSPRGASNHGSGAGSGR*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="4" PGL_strand="+" PGL_start="75809" PGL_stop="76254"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="75809" e_stop="76254"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.906"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.906">
            <gDNA_exon_boundary e_start="75809" e_stop="76254" e_length="446"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="75809" stop="76254"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U591120" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="4" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>CTTATTGTAGATGACCAAATTTTTTCTTCGAATACGAAATTAAATTACAATACACACACAAAAAATAGTTTAATTGTTTATTCTTTAAACTAAGGAATGAAAGAAAAAAAACAAAATAAGAATAAAAAATTCAAATAATGATAATAAAAGAAGTCAAAAAATAATTTATGTATGAAAAAAATCAAAATATACTTTGAAATTTGATAGAAGAATCATATATGTCCCTAAATAATTTTTTTTAAAAAAATAAAAGTAATAAATATAAATTTAAAACTAATTTTTTAACTTCTGTTAAATAAAGGGTATATATGAGTCATTTTGTAACTGCAGGGGTATATGTGAGCCGTTTGTATAACGGTAAGGGCATATATGGGCCACTTTTATAACGAGGGGTATATCAGCTCCAAATGACAAAGTTGAGGGGTATATCAGACCCTTTTCCCATT</gDNA_template>
            <first_frame> L  I  V  D  D  Q  I  F  S  S  N  T  K  L  N  Y  N  T  H  T  K  N  S  L  I  V  Y  S  L  N  *  G  M  K  E  K  K  Q  N  K  N  K  K  F  K  *  *  *  *  K  K  S  K  N  N  L  C  M  K  K  I  K  I  Y  F  E  I  *  *  K  N  H  I  C  P  *  I  I  F  F  K  K  I  K  V  I  N  I  N  L  K  L  I  F  *  L  L  L  N  K  G  Y  I  *  V  I  L  *  L  Q  G  Y  M  *  A  V  C  I  T  V  R  A  Y  M  G  H  F  Y  N  E  G  Y  I  S  S  K  *  Q  S  *  G  V  Y  Q  T  L  F  P   </first_frame>
            <second_frame>  L  L  *  M  T  K  F  F  L  R  I  R  N  *  I  T  I  H  T  Q  K  I  V  *  L  F  I  L  *  T  K  E  *  K  K  K  N  K  I  R  I  K  N  S  N  N  D  N  K  R  S  Q  K  I  I  Y  V  *  K  K  S  K  Y  T  L  K  F  D  R  R  I  I  Y  V  P  K  *  F  F  L  K  K  *  K  *  *  I  *  I  *  N  *  F  F  N  F  C  *  I  K  G  I  Y  E  S  F  C  N  C  R  G  I  C  E  P  F  V  *  R  *  G  H  I  W  A  T  F  I  T  R  G  I  S  A  P  N  D  K  V  E  G  Y  I  R  P  F  S  H  </second_frame>
            <third_frame>   Y  C  R  *  P  N  F  F  F  E  Y  E  I  K  L  Q  Y  T  H  K  K  *  F  N  C  L  F  F  K  L  R  N  E  R  K  K  T  K  *  E  *  K  I  Q  I  M  I  I  K  E  V  K  K  *  F  M  Y  E  K  N  Q  N  I  L  *  N  L  I  E  E  S  Y  M  S  L  N  N  F  F  *  K  N  K  S  N  K  Y  K  F  K  T  N  F  L  T  S  V  K  *  R  V  Y  M  S  H  F  V  T  A  G  V  Y  V  S  R  L  Y  N  G  K  G  I  Y  G  P  L  L  *  R  G  V  Y  Q  L  Q  M  T  K  L  R  G  I  S  D  P  F  P  I </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <none gDNA_id="C02HBa0332B10.1"/>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="5" PGL_strand="-" PGL_start="88313" PGL_stop="86069"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="88298" e_stop="87668"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.998"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.998">
            <gDNA_exon_boundary e_start="88298" e_stop="87668" e_length="631"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="88298" stop="87688"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U578000" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="88294" stop="87668"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U590727" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="5" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>GTTCGCTAGGGTTTCGGTGCAGATTTTTGATTTTCGCTTCATCTGAATCGTTTTCTGCAAACTTGCGAAGCTATGTACGGATCAAGGGGGTAAGTTTATCTTACTTGATTCATTCTTCTCCTATCTGTTCATGTGGGTGTTCTTTCTTTTTCTATGTCGATGTTTGTTTTCAAATTTTGTTTGTAGCAGTTGACGAATTTATATGATGCTTTCTGTTTGTGCCTTGTAGTAATTAATTATTGATTCTTTTTCTAGGTTGATTTTGCCTTTAGATTGTAAAATTAACACTTTCTTTTGCTATATATGGGAGGGTGAATTCGATAGCATGGGGTTTCTGAGCTGCTCTAGCATGCTTGTTACTTCAAGATTATCCTTTGATTGTTTCAACACCATAACTGAAGGATAAATTACAGTTACATGTATCTATAACAATTATCCTATATATTAACGGTTCATTATAACCCCCAAGTTTTTTTTCTTTTGGTGTTTTATGATCTTTATAACAACATTATGATATAGCATCCAAGTAATATCCGTTATAGAGAAGTTTGCCTCTACACCTTTTCAGGGAGTTGTGGATTTCTGGTTCAAAAATAAAGTTACTGATCTCTAGGAAGTTCTTACTAGCAAT</gDNA_template>
            <first_frame> V  R  *  G  F  G  A  D  F  *  F  S  L  H  L  N  R  F  L  Q  T  C  E  A  M  Y  G  S  R  G  *  V  Y  L  T  *  F  I  L  L  L  S  V  H  V  G  V  L  S  F  S  M  S  M  F  V  F  K  F  C  L  *  Q  L  T  N  L  Y  D  A  F  C  L  C  L  V  V  I  N  Y  *  F  F  F  *  V  D  F  A  F  R  L  *  N  *  H  F  L  L  L  Y  M  G  G  *  I  R  *  H  G  V  S  E  L  L  *  H  A  C  Y  F  K  I  I  L  *  L  F  Q  H  H  N  *  R  I  N  Y  S  Y  M  Y  L  *  Q  L  S  Y  I  L  T  V  H  Y  N  P  Q  V  F  F  L  L  V  F  Y  D  L  Y  N  N  I  M  I  *  H  P  S  N  I  R  Y  R  E  V  C  L  Y  T  F  S  G  S  C  G  F  L  V  Q  K  *  S  Y  *  S  L  G  S  S  Y  *  Q  </first_frame>
            <second_frame>  F  A  R  V  S  V  Q  I  F  D  F  R  F  I  *  I  V  F  C  K  L  A  K  L  C  T  D  Q  G  G  K  F  I  L  L  D  S  F  F  S  Y  L  F  M  W  V  F  F  L  F  L  C  R  C  L  F  S  N  F  V  C  S  S  *  R  I  Y  M  M  L  S  V  C  A  L  *  *  L  I  I  D  S  F  S  R  L  I  L  P  L  D  C  K  I  N  T  F  F  C  Y  I  W  E  G  E  F  D  S  M  G  F  L  S  C  S  S  M  L  V  T  S  R  L  S  F  D  C  F  N  T  I  T  E  G  *  I  T  V  T  C  I  Y  N  N  Y  P  I  Y  *  R  F  I  I  T  P  K  F  F  F  F  W  C  F  M  I  F  I  T  T  L  *  Y  S  I  Q  V  I  S  V  I  E  K  F  A  S  T  P  F  Q  G  V  V  D  F  W  F  K  N  K  V  T  D  L  *  E  V  L  T  S  N </second_frame>
            <third_frame>   S  L  G  F  R  C  R  F  L  I  F  A  S  S  E  S  F  S  A  N  L  R  S  Y  V  R  I  K  G  V  S  L  S  Y  L  I  H  S  S  P  I  C  S  C  G  C  S  F  F  F  Y  V  D  V  C  F  Q  I  L  F  V  A  V  D  E  F  I  *  C  F  L  F  V  P  C  S  N  *  L  L  I  L  F  L  G  *  F  C  L  *  I  V  K  L  T  L  S  F  A  I  Y  G  R  V  N  S  I  A  W  G  F  *  A  A  L  A  C  L  L  L  Q  D  Y  P  L  I  V  S  T  P  *  L  K  D  K  L  Q  L  H  V  S  I  T  I  I  L  Y  I  N  G  S  L  *  P  P  S  F  F  S  F  G  V  L  *  S  L  *  Q  H  Y  D  I  A  S  K  *  Y  P  L  *  R  S  L  P  L  H  L  F  R  E  L  W  I  S  G  S  K  I  K  L  L  I  S  R  K  F  L  L  A   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02HBa0332B10.1" strand="-"/>
                <serials PGL_serial="5" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="88296" stop="88093"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>201</number_coding_nucleotides>
                  <number_encoded_amino_acids>67</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>SLGFRCRFLIFASSESFSANLRSYVRIKGVSLSYLIHSSPICSCGCSFFFYVDVCFQILFVAVDEFI*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="2">
          <exon_coordinates>
            <exon e_start="88313" e_stop="88210"/>
            <exon e_start="87061" e_stop="86069"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="1.000" acc_prob="0.918" e_score="0.990"/>
          <exon-only e_score="0.994"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.990">
            <gDNA_exon_boundary e_start="88313" e_stop="88210" e_length="104"/>
          </exon>
          <intron i_serial="1" don_prob="1.000" acc_prob="0.918">
            <gDNA_intron_boundary i_start="88209" i_stop="87062" i_length="1148"/>
          </intron>
          <exon e_serial="2" e_score="0.994">
            <gDNA_exon_boundary e_start="87061" e_stop="86069" e_length="993"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="88313" stop="88210"/>
              <exon start="87061" stop="86069"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U577559" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="5" AGS_serial="2" gDNA_strand="-"/>
          <translation>
            <gDNA_template>CTTTACACAGCACTTGTTCGCTAGGGTTTCGGTGCAGATTTTTGATTTTCGCTTCATCTGAATCGTTTTCTGCAAACTTGCGAAGCTATGTACGGATCAAGGGG : GGCAATGTTGGGGAGCGGGGGGTTTTCAGACGGGTACGAGATCGGCTCAAAGAGACCAAGAATGATGGAATCAAATCCCTACTTCGCAGTGAACAGCAGTGCAAGTGGCTATCAGCAGGCTTTTGACTATGATAACAGATGTCAGCCTTCTGCCTTTCCTGTTGTTCGTTTAAGGGGTCTTCCATTTGATTGCACTGAAATTGACATTTACAAGTTCTTTGCTGGCCTGGACATTGTGGATATTTTTGTGGTCAACAAGGATGGTAGGTTCTCTGGAGAAGCATTTGTTGTCTTTGCTGGTCACATTCAAGTGGATTATGCTCTTCGGAGGGATAGACAGAACATGGGGAGGAGATATGTAGAGGTTTTCAGTTGCAAGAAGCAAGATTATTACCAAGCTATAGCTGCTGAGGTGAAGGAAGGAGGTTATGAATCTGACTACCGTGCTTCCCCTCCACCTCGTCCAAAGAGGGCCCAGAACAAAGATCAAATGGAGTACACAGAGATACTGAAGATGCGCGGTCTCCCTTACCGTTGTAAGAAATCTGATATCCTCAAGTTTTTTGGTGATGAATTTAACCTTACAGATGACAAGATAAACATTACCTACCGCTCGGATGGAAAAGCTACTGGTGATGCTTATGTGGAGTTTGCATCGGCTGAGGAGGCAAAGAAAGCTATGTGCAAGGACAATATGGAGATTGGATCAAGGTACATCGAGCTATTTCCTTCATATCCAGATGAAGCAAGACAAGGTGGATCAAGATCACGACGATGATGGAGAAGATCTCCTAGTATGAAATTTTTCATTTTGGGTTTAGACATTAAGTCCAGTTAAAGACTTTCTCACCCTGTTCCCGTATTATGTTTTCTACACAATATATATGAACCTGTGGAAGTTATCGAACTGTCCGTCTTGGATGTCTTAGTTGTGGTATCGGCCAACTCACTTTCAACTCTTGTGCCATCAATTGATTGTCTTTTTGTTGTGTT</gDNA_template>
            <first_frame> L  Y  T  A  L  V  R  *  G  F  G  A  D  F  *  F  S  L  H  L  N  R  F  L  Q  T  C  E  A  M  Y  G  S  R  G :   A  M  L  G  S  G  G  F  S  D  G  Y  E  I  G  S  K  R  P  R  M  M  E  S  N  P  Y  F  A  V  N  S  S  A  S  G  Y  Q  Q  A  F  D  Y  D  N  R  C  Q  P  S  A  F  P  V  V  R  L  R  G  L  P  F  D  C  T  E  I  D  I  Y  K  F  F  A  G  L  D  I  V  D  I  F  V  V  N  K  D  G  R  F  S  G  E  A  F  V  V  F  A  G  H  I  Q  V  D  Y  A  L  R  R  D  R  Q  N  M  G  R  R  Y  V  E  V  F  S  C  K  K  Q  D  Y  Y  Q  A  I  A  A  E  V  K  E  G  G  Y  E  S  D  Y  R  A  S  P  P  P  R  P  K  R  A  Q  N  K  D  Q  M  E  Y  T  E  I  L  K  M  R  G  L  P  Y  R  C  K  K  S  D  I  L  K  F  F  G  D  E  F  N  L  T  D  D  K  I  N  I  T  Y  R  S  D  G  K  A  T  G  D  A  Y  V  E  F  A  S  A  E  E  A  K  K  A  M  C  K  D  N  M  E  I  G  S  R  Y  I  E  L  F  P  S  Y  P  D  E  A  R  Q  G  G  S  R  S  R  R  *  W  R  R  S  P  S  M  K  F  F  I  L  G  L  D  I  K  S  S  *  R  L  S  H  P  V  P  V  L  C  F  L  H  N  I  Y  E  P  V  E  V  I  E  L  S  V  L  D  V  L  V  V  V  S  A  N  S  L  S  T  L  V  P  S  I  D  C  L  F  V  V   </first_frame>
            <second_frame>  F  T  Q  H  L  F  A  R  V  S  V  Q  I  F  D  F  R  F  I  *  I  V  F  C  K  L  A  K  L  C  T  D  Q  G   : G  Q  C  W  G  A  G  G  F  Q  T  G  T  R  S  A  Q  R  D  Q  E  *  W  N  Q  I  P  T  S  Q  *  T  A  V  Q  V  A  I  S  R  L  L  T  M  I  T  D  V  S  L  L  P  F  L  L  F  V  *  G  V  F  H  L  I  A  L  K  L  T  F  T  S  S  L  L  A  W  T  L  W  I  F  L  W  S  T  R  M  V  G  S  L  E  K  H  L  L  S  L  L  V  T  F  K  W  I  M  L  F  G  G  I  D  R  T  W  G  G  D  M  *  R  F  S  V  A  R  S  K  I  I  T  K  L  *  L  L  R  *  R  K  E  V  M  N  L  T  T  V  L  P  L  H  L  V  Q  R  G  P  R  T  K  I  K  W  S  T  Q  R  Y  *  R  C  A  V  S  L  T  V  V  R  N  L  I  S  S  S  F  L  V  M  N  L  T  L  Q  M  T  R  *  T  L  P  T  A  R  M  E  K  L  L  V  M  L  M  W  S  L  H  R  L  R  R  Q  R  K  L  C  A  R  T  I  W  R  L  D  Q  G  T  S  S  Y  F  L  H  I  Q  M  K  Q  D  K  V  D  Q  D  H  D  D  D  G  E  D  L  L  V  *  N  F  S  F  W  V  *  T  L  S  P  V  K  D  F  L  T  L  F  P  Y  Y  V  F  Y  T  I  Y  M  N  L  W  K  L  S  N  C  P  S  W  M  S  *  L  W  Y  R  P  T  H  F  Q  L  L  C  H  Q  L  I  V  F  L  L  C  </second_frame>
            <third_frame>   L  H  S  T  C  S  L  G  F  R  C  R  F  L  I  F  A  S  S  E  S  F  S  A  N  L  R  S  Y  V  R  I  K  G  :  G  N  V  G  E  R  G  V  F  R  R  V  R  D  R  L  K  E  T  K  N  D  G  I  K  S  L  L  R  S  E  Q  Q  C  K  W  L  S  A  G  F  *  L  *  *  Q  M  S  A  F  C  L  S  C  C  S  F  K  G  S  S  I  *  L  H  *  N  *  H  L  Q  V  L  C  W  P  G  H  C  G  Y  F  C  G  Q  Q  G  W  *  V  L  W  R  S  I  C  C  L  C  W  S  H  S  S  G  L  C  S  S  E  G  *  T  E  H  G  E  E  I  C  R  G  F  Q  L  Q  E  A  R  L  L  P  S  Y  S  C  *  G  E  G  R  R  L  *  I  *  L  P  C  F  P  S  T  S  S  K  E  G  P  E  Q  R  S  N  G  V  H  R  D  T  E  D  A  R  S  P  L  P  L  *  E  I  *  Y  P  Q  V  F  W  *  *  I  *  P  Y  R  *  Q  D  K  H  Y  L  P  L  G  W  K  S  Y  W  *  C  L  C  G  V  C  I  G  *  G  G  K  E  S  Y  V  Q  G  Q  Y  G  D  W  I  K  V  H  R  A  I  S  F  I  S  R  *  S  K  T  R  W  I  K  I  T  T  M  M  E  K  I  S  *  Y  E  I  F  H  F  G  F  R  H  *  V  Q  L  K  T  F  S  P  C  S  R  I  M  F  S  T  Q  Y  I  *  T  C  G  S  Y  R  T  V  R  L  G  C  L  S  C  G  I  G  Q  L  T  F  N  S  C  A  I  N  *  L  S  F  C  C  V </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02HBa0332B10.1" strand="-"/>
                <serials PGL_serial="5" AGS_serial="2" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="88268" stop="88210"/>
                    <exon start="87061" stop="86284"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>834</number_coding_nucleotides>
                  <number_encoded_amino_acids>278</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>FSLHLNRFLQTCEAMYGSRGAMLGSGGFSDGYEIGSKRPRMMESNPYFAVNSSASGYQQAFDYDNRCQPSAFPVVRLRGLPFDCTEIDIYKFFAGLDIVDIFVVNKDGRFSGEAFVVFAGHIQVDYALRRDRQNMGRRYVEVFSCKKQDYYQAIAAEVKEGGYESDYRASPPPRPKRAQNKDQMEYTEILKMRGLPYRCKKSDILKFFGDEFNLTDDKINITYRSDGKATGDAYVEFASAEEAKKAMCKDNMEIGSRYIELFPSYPDEARQGGSRSRR*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="6" PGL_strand="+" PGL_start="97019" PGL_stop="100810"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="97019" e_stop="97292"/>
            <exon e_start="97762" e_stop="97846"/>
            <exon e_start="99447" e_stop="99501"/>
            <exon e_start="100147" e_stop="100285"/>
            <exon e_start="100548" e_stop="100810"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.998" acc_prob="0.951" e_score="1.000"/>
          <exon-intron don_prob="0.981" acc_prob="0.933" e_score="1.000"/>
          <exon-intron don_prob="0.977" acc_prob="0.877" e_score="1.000"/>
          <exon-intron don_prob="0.984" acc_prob="0.998" e_score="1.000"/>
          <exon-only e_score="0.996"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="97019" e_stop="97292" e_length="274"/>
          </exon>
          <intron i_serial="1" don_prob="0.998" acc_prob="0.951">
            <gDNA_intron_boundary i_start="97293" i_stop="97761" i_length="469"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="97762" e_stop="97846" e_length="85"/>
          </exon>
          <intron i_serial="2" don_prob="0.981" acc_prob="0.933">
            <gDNA_intron_boundary i_start="97847" i_stop="99446" i_length="1600"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="99447" e_stop="99501" e_length="55"/>
          </exon>
          <intron i_serial="3" don_prob="0.977" acc_prob="0.877">
            <gDNA_intron_boundary i_start="99502" i_stop="100146" i_length="645"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="100147" e_stop="100285" e_length="139"/>
          </exon>
          <intron i_serial="4" don_prob="0.984" acc_prob="0.998">
            <gDNA_intron_boundary i_start="100286" i_stop="100547" i_length="262"/>
          </intron>
          <exon e_serial="5" e_score="0.996">
            <gDNA_exon_boundary e_start="100548" e_stop="100810" e_length="263"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="97019" stop="97292"/>
              <exon start="97762" stop="97846"/>
              <exon start="99447" stop="99501"/>
              <exon start="100147" stop="100285"/>
              <exon start="100548" stop="100810"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U563016" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="6" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>GATGGGTCCGGATCAACCCGTTGAGAGTTATCTTCTTGAATCCCTGATCAAATCTGCAATTCGTCGACGTTGATGCCGGAGTAACAGTGGCATGGCGGAGGCATTGGCCATTGCAGTAGGAAAATACACATACGTACATGAAGTGGGTAAAGGCCCACCTGAAGCCATTGACGCTCACCATATTGTGGTTCGAAGGAGTAGAGAAAAGGGTTTCAATTTATGCCTATTTACTCTTCTCCTTTTTGCCTATCCCACCTTTCTGTTATTCCGGCAG : GGAAAGCTAGATACTCTTCATATTTGGAGCTTAGTTATCATGACATTGCTTATGAGGTTATTTCTAAAGAAGCCAGTTAAGAAAG : AGTCTGTTCTAATTCTTCCAGCTTTTGGAGTTCAACTTGAGACTCAGTATGGAAG : TGGGAAAACAGTTCGCCAGTTTGTCCCCATCAGCAGGATTTTGAAACCAGTGCTGACAGAATGTGTCACACCAATCACCTGTTATTGGAGTCTGTCTTTGATTATTCGAGGAGAGGAAGAACTTATGCTAGTATTCAAG : GAATTACGTCCACCAGTGAAGATGTTAGCGCCCATCTGGAAGGCTTTATGTGCTGCCATTGAATGTGGAGAATGCACGGAGACGATTACATAGATTGTAATAGTATAATCTCAACCAATTCAATTCTAGTATAAATTTTTTTTCCAGCATTTGTATTCTTTACATTTGAAGTTGTAAATGGCATTGATATAGTCCTCCATATTATCATCACACATGCTTCCTGCAAAATGGCTAAATCATATGAGCCCTGTTACTGCACTGAA</gDNA_template>
            <first_frame> D  G  S  G  S  T  R  *  E  L  S  S  *  I  P  D  Q  I  C  N  S  S  T  L  M  P  E  *  Q  W  H  G  G  G  I  G  H  C  S  R  K  I  H  I  R  T  *  S  G  *  R  P  T  *  S  H  *  R  S  P  Y  C  G  S  K  E  *  R  K  G  F  Q  F  M  P  I  Y  S  S  P  F  C  L  S  H  L  S  V  I  P  A   : G  K  A  R  Y  S  S  Y  L  E  L  S  Y  H  D  I  A  Y  E  V  I  S  K  E  A  S  *  E  R :   V  C  S  N  S  S  S  F  W  S  S  T  *  D  S  V  W  K  :  W  E  N  S  S  P  V  C  P  H  Q  Q  D  F  E  T  S  A  D  R  M  C  H  T  N  H  L  L  L  E  S  V  F  D  Y  S  R  R  G  R  T  Y  A  S  I  Q   : G  I  T  S  T  S  E  D  V  S  A  H  L  E  G  F  M  C  C  H  *  M  W  R  M  H  G  D  D  Y  I  D  C  N  S  I  I  S  T  N  S  I  L  V  *  I  F  F  P  A  F  V  F  F  T  F  E  V  V  N  G  I  D  I  V  L  H  I  I  I  T  H  A  S  C  K  M  A  K  S  Y  E  P  C  Y  C  T  E </first_frame>
            <second_frame>  M  G  P  D  Q  P  V  E  S  Y  L  L  E  S  L  I  K  S  A  I  R  R  R  *  C  R  S  N  S  G  M  A  E  A  L  A  I  A  V  G  K  Y  T  Y  V  H  E  V  G  K  G  P  P  E  A  I  D  A  H  H  I  V  V  R  R  S  R  E  K  G  F  N  L  C  L  F  T  L  L  L  F  A  Y  P  T  F  L  L  F  R  Q  :  G  K  L  D  T  L  H  I  W  S  L  V  I  M  T  L  L  M  R  L  F  L  K  K  P  V  K  K   : E  S  V  L  I  L  P  A  F  G  V  Q  L  E  T  Q  Y  G  S :   G  K  T  V  R  Q  F  V  P  I  S  R  I  L  K  P  V  L  T  E  C  V  T  P  I  T  C  Y  W  S  L  S  L  I  I  R  G  E  E  E  L  M  L  V  F  K  :  E  L  R  P  P  V  K  M  L  A  P  I  W  K  A  L  C  A  A  I  E  C  G  E  C  T  E  T  I  T  *  I  V  I  V  *  S  Q  P  I  Q  F  *  Y  K  F  F  F  Q  H  L  Y  S  L  H  L  K  L  *  M  A  L  I  *  S  S  I  L  S  S  H  M  L  P  A  K  W  L  N  H  M  S  P  V  T  A  L   </second_frame>
            <third_frame>   W  V  R  I  N  P  L  R  V  I  F  L  N  P  *  S  N  L  Q  F  V  D  V  D  A  G  V  T  V  A  W  R  R  H  W  P  L  Q  *  E  N  T  H  T  Y  M  K  W  V  K  A  H  L  K  P  L  T  L  T  I  L  W  F  E  G  V  E  K  R  V  S  I  Y  A  Y  L  L  F  S  F  L  P  I  P  P  F  C  Y  S  G  R :   E  S  *  I  L  F  I  F  G  A  *  L  S  *  H  C  L  *  G  Y  F  *  R  S  Q  L  R  K  :  S  L  F  *  F  F  Q  L  L  E  F  N  L  R  L  S  M  E   : V  G  K  Q  F  A  S  L  S  P  S  A  G  F  *  N  Q  C  *  Q  N  V  S  H  Q  S  P  V  I  G  V  C  L  *  L  F  E  E  R  K  N  L  C  *  Y  S  R :   N  Y  V  H  Q  *  R  C  *  R  P  S  G  R  L  Y  V  L  P  L  N  V  E  N  A  R  R  R  L  H  R  L  *  *  Y  N  L  N  Q  F  N  S  S  I  N  F  F  S  S  I  C  I  L  Y  I  *  S  C  K  W  H  *  Y  S  P  P  Y  Y  H  H  T  C  F  L  Q  N  G  *  I  I  *  A  L  L  L  H  *  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02HBa0332B10.1" strand="+"/>
                <serials PGL_serial="6" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="97092" stop="97292"/>
                    <exon start="97762" stop="97846"/>
                    <exon start="99447" stop="99501"/>
                    <exon start="100147" stop="100285"/>
                    <exon start="100548" stop="100640"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>570</number_coding_nucleotides>
                  <number_encoded_amino_acids>190</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>CRSNSGMAEALAIAVGKYTYVHEVGKGPPEAIDAHHIVVRRSREKGFNLCLFTLLLFAYPTFLLFRQGKLDTLHIWSLVIMTLLMRLFLKKPVKKESVLILPAFGVQLETQYGSGKTVRQFVPISRILKPVLTECVTPITCYWSLSLIIRGEEELMLVFKELRPPVKMLAPIWKALCAAIECGECTETIT*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="7" PGL_strand="-" PGL_start="104062" PGL_stop="103118"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="104062" e_stop="103118"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.998"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.998">
            <gDNA_exon_boundary e_start="104062" e_stop="103118" e_length="945"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="104062" stop="103118"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U585600" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="7" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>GGGGCTCGATCTAAAGATTACTTTGACAGATATGGAGATTTGAAGAGGATCCGGAGGCTGAAGTATGGGTCTTTAGAAAAATTACTTATCGACAAGTTCAGGTTTTCTGAAATTGATGCTCTTGAATTTGCCAAATTTCTTTGTCCCCTTCTTGATTTTGAGCCTGAGAATCGACCAACTGCACAGCAGTGCTTGCAACACCCATGGCTCAACATTAAAGGTCAAAACCAAACAGAGGTGAAGAGTGAATCTGGTATGGAAAAGGTTAATGTTGGGATGAGAAACCTACAAGTGAAGGCCGGTAAGTGATGTATGAATGAATGGTTGGTCTTCTCACTGCAGCACCGCTCCATTGCCCTCTCTCCCCCGTATCAGATTACTTGTGAATTAATTTTGGATTGTGTTTAAGATTTAATTAGATTCAAGTCATTGGTAGATTTAGATGTATTATTTTGATTGATTATCACGAGGAAACGACCTCCAAAAGGAGAAATTGGCATTAGTCCCTGAAATATCCCTAGGTGAAGCTTCCACTTGATTTAATGATGTTGACATTTACAAAAGAAACTATCCTTCATTCCGCTAACAAATAAGTTGGCCCGTGTTCTATTGAAGGCCTGGAGGAACAAAGCAAGCTCTACAGCGTTAGTAGTCTATGGCTTCATCTGGACTCAACATTATCAATCTAGGAAAGGATCTTTAGCAGCCTGTAGAGAACATTACATTAATGGGAGCCTCTTGATTTATGGAGTGTGTTATGTACATTTAAACATCAAAAGATTTGGATTCTGTGGAGGAAGTTTATTCTCCATTTCCGCAGGTAGGAAAGAATTCTTTTCTTTTTTGATTTTAACTCAGGTTGAAGTCTTTGTAACAACTGATATATAATTTTTTTTGTATACATCACTCTGAAGTATATTAGTTGCCACTTATTTTTTTACAGAG</gDNA_template>
            <first_frame> G  A  R  S  K  D  Y  F  D  R  Y  G  D  L  K  R  I  R  R  L  K  Y  G  S  L  E  K  L  L  I  D  K  F  R  F  S  E  I  D  A  L  E  F  A  K  F  L  C  P  L  L  D  F  E  P  E  N  R  P  T  A  Q  Q  C  L  Q  H  P  W  L  N  I  K  G  Q  N  Q  T  E  V  K  S  E  S  G  M  E  K  V  N  V  G  M  R  N  L  Q  V  K  A  G  K  *  C  M  N  E  W  L  V  F  S  L  Q  H  R  S  I  A  L  S  P  P  Y  Q  I  T  C  E  L  I  L  D  C  V  *  D  L  I  R  F  K  S  L  V  D  L  D  V  L  F  *  L  I  I  T  R  K  R  P  P  K  G  E  I  G  I  S  P  *  N  I  P  R  *  S  F  H  L  I  *  *  C  *  H  L  Q  K  K  L  S  F  I  P  L  T  N  K  L  A  R  V  L  L  K  A  W  R  N  K  A  S  S  T  A  L  V  V  Y  G  F  I  W  T  Q  H  Y  Q  S  R  K  G  S  L  A  A  C  R  E  H  Y  I  N  G  S  L  L  I  Y  G  V  C  Y  V  H  L  N  I  K  R  F  G  F  C  G  G  S  L  F  S  I  S  A  G  R  K  E  F  F  S  F  L  I  L  T  Q  V  E  V  F  V  T  T  D  I  *  F  F  L  Y  T  S  L  *  S  I  L  V  A  T  Y  F  F  T  E </first_frame>
            <second_frame>  G  L  D  L  K  I  T  L  T  D  M  E  I  *  R  G  S  G  G  *  S  M  G  L  *  K  N  Y  L  S  T  S  S  G  F  L  K  L  M  L  L  N  L  P  N  F  F  V  P  F  L  I  L  S  L  R  I  D  Q  L  H  S  S  A  C  N  T  H  G  S  T  L  K  V  K  T  K  Q  R  *  R  V  N  L  V  W  K  R  L  M  L  G  *  E  T  Y  K  *  R  P  V  S  D  V  *  M  N  G  W  S  S  H  C  S  T  A  P  L  P  S  L  P  R  I  R  L  L  V  N  *  F  W  I  V  F  K  I  *  L  D  S  S  H  W  *  I  *  M  Y  Y  F  D  *  L  S  R  G  N  D  L  Q  K  E  K  L  A  L  V  P  E  I  S  L  G  E  A  S  T  *  F  N  D  V  D  I  Y  K  R  N  Y  P  S  F  R  *  Q  I  S  W  P  V  F  Y  *  R  P  G  G  T  K  Q  A  L  Q  R  *  *  S  M  A  S  S  G  L  N  I  I  N  L  G  K  D  L  *  Q  P  V  E  N  I  T  L  M  G  A  S  *  F  M  E  C  V  M  Y  I  *  T  S  K  D  L  D  S  V  E  E  V  Y  S  P  F  P  Q  V  G  K  N  S  F  L  F  *  F  *  L  R  L  K  S  L  *  Q  L  I  Y  N  F  F  C  I  H  H  S  E  V  Y  *  L  P  L  I  F  L  Q   </second_frame>
            <third_frame>   G  S  I  *  R  L  L  *  Q  I  W  R  F  E  E  D  P  E  A  E  V  W  V  F  R  K  I  T  Y  R  Q  V  Q  V  F  *  N  *  C  S  *  I  C  Q  I  S  L  S  P  S  *  F  *  A  *  E  S  T  N  C  T  A  V  L  A  T  P  M  A  Q  H  *  R  S  K  P  N  R  G  E  E  *  I  W  Y  G  K  G  *  C  W  D  E  K  P  T  S  E  G  R  *  V  M  Y  E  *  M  V  G  L  L  T  A  A  P  L  H  C  P  L  S  P  V  S  D  Y  L  *  I  N  F  G  L  C  L  R  F  N  *  I  Q  V  I  G  R  F  R  C  I  I  L  I  D  Y  H  E  E  T  T  S  K  R  R  N  W  H  *  S  L  K  Y  P  *  V  K  L  P  L  D  L  M  M  L  T  F  T  K  E  T  I  L  H  S  A  N  K  *  V  G  P  C  S  I  E  G  L  E  E  Q  S  K  L  Y  S  V  S  S  L  W  L  H  L  D  S  T  L  S  I  *  E  R  I  F  S  S  L  *  R  T  L  H  *  W  E  P  L  D  L  W  S  V  L  C  T  F  K  H  Q  K  I  W  I  L  W  R  K  F  I  L  H  F  R  R  *  E  R  I  L  F  F  F  D  F  N  S  G  *  S  L  C  N  N  *  Y  I  I  F  F  V  Y  I  T  L  K  Y  I  S  C  H  L  F  F  Y  R  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02HBa0332B10.1" strand="-"/>
                <serials PGL_serial="7" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="103510" stop="103175"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>333</number_coding_nucleotides>
                  <number_encoded_amino_acids>111</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>HLQKKLSFIPLTNKLARVLLKAWRNKASSTALVVYGFIWTQHYQSRKGSLAACREHYINGSLLIYGVCYVHLNIKRFGFCGGSLFSISAGRKEFFSFLILTQVEVFVTTDI*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C02HBa0332B10.1" strand="-"/>
                <serials PGL_serial="7" AGS_serial="1" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="104062" stop="103754"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>306</number_coding_nucleotides>
                  <number_encoded_amino_acids>102</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>GARSKDYFDRYGDLKRIRRLKYGSLEKLLIDKFRFSEIDALEFAKFLCPLLDFEPENRPTAQQCLQHPWLNIKGQNQTEVKSESGMEKVNVGMRNLQVKAGK*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="8" PGL_strand="+" PGL_start="103118" PGL_stop="103353"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="103118" e_stop="103353"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.949"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.949">
            <gDNA_exon_boundary e_start="103118" e_stop="103353" e_length="236"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="103118" stop="103353"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U595878" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="8" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>CTCTGTAAAAAAATAAGTGGCAACTAATATACTTCAGAGTGATGTATACAAAAAAAATTATATATCAGTTGTTACAAAGACTTCAACCTGAGTTAAAATCAAAAAAGAAAAGAATTCTTTCCTACCTGCGGAAATGGAGAATAAACTTCCTCCACAGAATCCAAATCTTTTGATGTTTAAATGTACATAACACACTCCATAAATCAAGAGGCTCCCATTAATGTAATGTTCTCTAC</gDNA_template>
            <first_frame> L  C  K  K  I  S  G  N  *  Y  T  S  E  *  C  I  Q  K  K  L  Y  I  S  C  Y  K  D  F  N  L  S  *  N  Q  K  R  K  E  F  F  P  T  C  G  N  G  E  *  T  S  S  T  E  S  K  S  F  D  V  *  M  Y  I  T  H  S  I  N  Q  E  A  P  I  N  V  M  F  S   </first_frame>
            <second_frame>  S  V  K  K  *  V  A  T  N  I  L  Q  S  D  V  Y  K  K  N  Y  I  S  V  V  T  K  T  S  T  *  V  K  I  K  K  E  K  N  S  F  L  P  A  E  M  E  N  K  L  P  P  Q  N  P  N  L  L  M  F  K  C  T  *  H  T  P  *  I  K  R  L  P  L  M  *  C  S  L  </second_frame>
            <third_frame>   L  *  K  N  K  W  Q  L  I  Y  F  R  V  M  Y  T  K  K  I  I  Y  Q  L  L  Q  R  L  Q  P  E  L  K  S  K  K  K  R  I  L  S  Y  L  R  K  W  R  I  N  F  L  H  R  I  Q  I  F  *  C  L  N  V  H  N  T  L  H  K  S  R  G  S  H  *  C  N  V  L  Y </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <none gDNA_id="C02HBa0332B10.1"/>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="9" PGL_strand="-" PGL_start="107380" PGL_stop="104684"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="107380" e_stop="106993"/>
            <exon e_start="105340" e_stop="104684"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="1.000" acc_prob="0.998" e_score="1.000"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="107380" e_stop="106993" e_length="388"/>
          </exon>
          <intron i_serial="1" don_prob="1.000" acc_prob="0.998">
            <gDNA_intron_boundary i_start="106992" i_stop="105341" i_length="1652"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="105340" e_stop="104684" e_length="657"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="107380" stop="106993"/>
              <exon start="105340" stop="104939"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U573573" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="105020" stop="104684"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U573572" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="9" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>ATAGGCATGGGAAAAAAGAGGAAAAGAGGAAAAAGTGGAGAAAACATGGTATACAAGGCCACATATAACCCCGCAATAACGCACTGTCTCATTCATTCTTTGCTTCCATAAAGCTTTTTCCTCGACATTTTCCACTTTGCTTCTTCTCTAATCCAATTTCTTTTGTAGATCACACTCTGCGAATCACCTCTGATCGATCATGTCAGGTTCACCGTCCTCATCGTCGGCATCCGAAGATGAAGATGAAGGAATCGATTCGTACAGAAAAGGAGGATATCATGCCGTCAGAATCGGTGATTCATTTTCCGGTGGACGATATATCGCTCAGAGAAAACTTGGCTGGGGAGAATTCTCTACCGTTTGGCTCGCTTATGATACTCGATCATCC : GAATTTGTAGCTTTGAAGATCCAGAAAAGTGCACCACAATTTGCTCAAGCTGCTCTTCACGAAATTGAAGTCCTTTCTGCTATTGCCGACGGTGATACCTCTAATAGTAAATATGTTGTTAGACTTATTGACCATTTTAAGCATACAGGACCAAATGGACAGCATTCATGCATGGTCCTTGAATTTCTTGGTGACAGCTTATTGCGTCTCGTCAAATATAATCGTTATAAAGGCCTTGAGCTGGACAAAGTTAGGGAAATATGCAAGTGCATTCTAATTGGTCTAGATTATTTGCACAGGGAACTTGGAATTATTCATACAGACCTAAAACTTGAAAATGTTCTTTTACTTTCCACGATAAATGCCACAAAGGATCCAATTAGATCGGGAACACCGCCCATACTTGAAAGGCCTGAAGGGATCCCAAAGGGAGGAGCAACTATGAATATTATTGAGAAAAAGCTAAAACAAAGGGCAAGGAGGGCAGCAGCCAGGATATCCGGTAGACGGTCTTCAATGGGTGGGGTAGGAGGAGGTGCGAAAACAAATAGAAGTCTCGATGGTATTGACTTGAAGTGCAAGGTTGTGGATTTTGGAAGTGCATGCTGGGCTGACAAGCAGTTTGCACAAGAAATTCAGACACGACAGTATAGATCT</gDNA_template>
            <first_frame> I  G  M  G  K  K  R  K  R  G  K  S  G  E  N  M  V  Y  K  A  T  Y  N  P  A  I  T  H  C  L  I  H  S  L  L  P  *  S  F  F  L  D  I  F  H  F  A  S  S  L  I  Q  F  L  L  *  I  T  L  C  E  S  P  L  I  D  H  V  R  F  T  V  L  I  V  G  I  R  R  *  R  *  R  N  R  F  V  Q  K  R  R  I  S  C  R  Q  N  R  *  F  I  F  R  W  T  I  Y  R  S  E  K  T  W  L  G  R  I  L  Y  R  L  A  R  L  *  Y  S  I  I   : R  I  C  S  F  E  D  P  E  K  C  T  T  I  C  S  S  C  S  S  R  N  *  S  P  F  C  Y  C  R  R  *  Y  L  *  *  *  I  C  C  *  T  Y  *  P  F  *  A  Y  R  T  K  W  T  A  F  M  H  G  P  *  I  S  W  *  Q  L  I  A  S  R  Q  I  *  S  L  *  R  P  *  A  G  Q  S  *  G  N  M  Q  V  H  S  N  W  S  R  L  F  A  Q  G  T  W  N  Y  S  Y  R  P  K  T  *  K  C  S  F  T  F  H  D  K  C  H  K  G  S  N  *  I  G  N  T  A  H  T  *  K  A  *  R  D  P  K  G  R  S  N  Y  E  Y  Y  *  E  K  A  K  T  K  G  K  E  G  S  S  Q  D  I  R  *  T  V  F  N  G  W  G  R  R  R  C  E  N  K  *  K  S  R  W  Y  *  L  E  V  Q  G  C  G  F  W  K  C  M  L  G  *  Q  A  V  C  T  R  N  S  D  T  T  V  *  I  </first_frame>
            <second_frame>  *  A  W  E  K  R  G  K  E  E  K  V  E  K  T  W  Y  T  R  P  H  I  T  P  Q  *  R  T  V  S  F  I  L  C  F  H  K  A  F  S  S  T  F  S  T  L  L  L  L  *  S  N  F  F  C  R  S  H  S  A  N  H  L  *  S  I  M  S  G  S  P  S  S  S  S  A  S  E  D  E  D  E  G  I  D  S  Y  R  K  G  G  Y  H  A  V  R  I  G  D  S  F  S  G  G  R  Y  I  A  Q  R  K  L  G  W  G  E  F  S  T  V  W  L  A  Y  D  T  R  S  S  :  E  F  V  A  L  K  I  Q  K  S  A  P  Q  F  A  Q  A  A  L  H  E  I  E  V  L  S  A  I  A  D  G  D  T  S  N  S  K  Y  V  V  R  L  I  D  H  F  K  H  T  G  P  N  G  Q  H  S  C  M  V  L  E  F  L  G  D  S  L  L  R  L  V  K  Y  N  R  Y  K  G  L  E  L  D  K  V  R  E  I  C  K  C  I  L  I  G  L  D  Y  L  H  R  E  L  G  I  I  H  T  D  L  K  L  E  N  V  L  L  L  S  T  I  N  A  T  K  D  P  I  R  S  G  T  P  P  I  L  E  R  P  E  G  I  P  K  G  G  A  T  M  N  I  I  E  K  K  L  K  Q  R  A  R  R  A  A  A  R  I  S  G  R  R  S  S  M  G  G  V  G  G  G  A  K  T  N  R  S  L  D  G  I  D  L  K  C  K  V  V  D  F  G  S  A  C  W  A  D  K  Q  F  A  Q  E  I  Q  T  R  Q  Y  R  S </second_frame>
            <third_frame>   R  H  G  K  K  E  E  K  R  K  K  W  R  K  H  G  I  Q  G  H  I  *  P  R  N  N  A  L  S  H  S  F  F  A  S  I  K  L  F  P  R  H  F  P  L  C  F  F  S  N  P  I  S  F  V  D  H  T  L  R  I  T  S  D  R  S  C  Q  V  H  R  P  H  R  R  H  P  K  M  K  M  K  E  S  I  R  T  E  K  E  D  I  M  P  S  E  S  V  I  H  F  P  V  D  D  I  S  L  R  E  N  L  A  G  E  N  S  L  P  F  G  S  L  M  I  L  D  H  P :   N  L  *  L  *  R  S  R  K  V  H  H  N  L  L  K  L  L  F  T  K  L  K  S  F  L  L  L  P  T  V  I  P  L  I  V  N  M  L  L  D  L  L  T  I  L  S  I  Q  D  Q  M  D  S  I  H  A  W  S  L  N  F  L  V  T  A  Y  C  V  S  S  N  I  I  V  I  K  A  L  S  W  T  K  L  G  K  Y  A  S  A  F  *  L  V  *  I  I  C  T  G  N  L  E  L  F  I  Q  T  *  N  L  K  M  F  F  Y  F  P  R  *  M  P  Q  R  I  Q  L  D  R  E  H  R  P  Y  L  K  G  L  K  G  S  Q  R  E  E  Q  L  *  I  L  L  R  K  S  *  N  K  G  Q  G  G  Q  Q  P  G  Y  P  V  D  G  L  Q  W  V  G  *  E  E  V  R  K  Q  I  E  V  S  M  V  L  T  *  S  A  R  L  W  I  L  E  V  H  A  G  L  T  S  S  L  H  K  K  F  R  H  D  S  I  D   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02HBa0332B10.1" strand="-"/>
                <serials PGL_serial="9" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="107187" stop="106993"/>
                    <exon start="105340" stop="104684"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>852</number_coding_nucleotides>
                  <number_encoded_amino_acids>284</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>SIMSGSPSSSSASEDEDEGIDSYRKGGYHAVRIGDSFSGGRYIAQRKLGWGEFSTVWLAYDTRSSEFVALKIQKSAPQFAQAALHEIEVLSAIADGDTSNSKYVVRLIDHFKHTGPNGQHSCMVLEFLGDSLLRLVKYNRYKGLELDKVREICKCILIGLDYLHRELGIIHTDLKLENVLLLSTINATKDPIRSGTPPILERPEGIPKGGATMNIIEKKLKQRARRAAARISGRRSSMGGVGGGAKTNRSLDGIDLKCKVVDFGSACWADKQFAQEIQTRQYRS</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="10" PGL_strand="+" PGL_start="111720" PGL_stop="115993"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="111720" e_stop="112109"/>
            <exon e_start="115238" e_stop="115993"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.998" acc_prob="0.995" e_score="0.995"/>
          <exon-only e_score="0.997"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.995">
            <gDNA_exon_boundary e_start="111720" e_stop="112109" e_length="390"/>
          </exon>
          <intron i_serial="1" don_prob="0.998" acc_prob="0.995">
            <gDNA_intron_boundary i_start="112110" i_stop="115237" i_length="3128"/>
          </intron>
          <exon e_serial="2" e_score="0.997">
            <gDNA_exon_boundary e_start="115238" e_stop="115993" e_length="756"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="111720" stop="112109"/>
              <exon start="115238" stop="115993"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U563786" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="10" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>GAAATGAAAACCATGCTTTGATCACAACACATAAAACTACCACGGCGAATGCACTCTGTTTTTTCACTTTACCCCATTCATTCTCTCTAGCCTCCGGCACCGGCAAGTCGCCGTCGGCTGACATTCTAAAACCCTTTGAGTTTTTAGATCAAACTTTGCTATAAATGATTCGATAACGATTGCTTTACCCACAGATCTAATTCAGAACCGCAATCAATCGGGGGAAGATATCTCAATTGACTAATGGCTGCACAGAATCAGAGTCCGAATATGGATCAATTTGACGCCTATTTTCGGCGAGCTGATTTGGATCAGGATGGTCGGATCAGTGGCCCTGAGGCCGTTGCATTTCTCAAAGGCTCAAATTTGCCCCAACCAGTCCTCGCTCAG : ATTTGGACATATGCTGATCAAAGTCGTACTGGCTACCTTAGTCGCCAAGAATTTTACAATACTCTCAAGCTTGTTACGGTAGCACAAAAACGAGAGTTGACTCCAGAAATAGTGAAGGCTGCACTATTCACTCCAGCTTCAGCCAAAATTCCTGCTCCCCAAATAAACCTTGCAGTCATACCAGGTCCTCAACCAACTAATAAGGTTGGTTCTACAGTTCCTCCAGTTGGTGGTGCTACTCCAACAGCAACTCAAACTTTCGGCGTTAGGGGTCCACAAGGCTTACCAGCTCAGCAAAGTTATGTGGGGCCTCCTAGGCCCTCAAATCCTAGCCCTGGTTTCCAATCTCAACCAAATGTTTCCGGACAAGGAATGCTAGTTGGAAGTACTATTGCAGCTTCTCGCCCTCCCAGTTCCACTGATTTGTTTGCTGGTCAGAATGGTCGCTCACAATCAGGTGCCAATTCCCAAGCTCCTAATTCAAGTGGCAGTTCTAGAAGTCAGGATGCATTTGGTCTGGCTGTATCAACACCTTCTGCACAACAAACACAACAAGCAACCATGTCATCAGTGCAACCAAATCTATCAAAATCAAATAATGCAACTTTGTCGCATGGCAACCTGCTTGAAGCCAAGATGCCTAAAGCTGTTTCAGTTGCAGGAAATGGATTTCCATCCGATTCACTCTTTGGAGATGTTTTTTCAGTTGCCTCAGTTCAACCAAATCAAAGCTCCACACCAACTATATCTTCAGCT</gDNA_template>
            <first_frame> E  M  K  T  M  L  *  S  Q  H  I  K  L  P  R  R  M  H  S  V  F  S  L  Y  P  I  H  S  L  *  P  P  A  P  A  S  R  R  R  L  T  F  *  N  P  L  S  F  *  I  K  L  C  Y  K  *  F  D  N  D  C  F  T  H  R  S  N  S  E  P  Q  S  I  G  G  R  Y  L  N  *  L  M  A  A  Q  N  Q  S  P  N  M  D  Q  F  D  A  Y  F  R  R  A  D  L  D  Q  D  G  R  I  S  G  P  E  A  V  A  F  L  K  G  S  N  L  P  Q  P  V  L  A  Q  :  I  W  T  Y  A  D  Q  S  R  T  G  Y  L  S  R  Q  E  F  Y  N  T  L  K  L  V  T  V  A  Q  K  R  E  L  T  P  E  I  V  K  A  A  L  F  T  P  A  S  A  K  I  P  A  P  Q  I  N  L  A  V  I  P  G  P  Q  P  T  N  K  V  G  S  T  V  P  P  V  G  G  A  T  P  T  A  T  Q  T  F  G  V  R  G  P  Q  G  L  P  A  Q  Q  S  Y  V  G  P  P  R  P  S  N  P  S  P  G  F  Q  S  Q  P  N  V  S  G  Q  G  M  L  V  G  S  T  I  A  A  S  R  P  P  S  S  T  D  L  F  A  G  Q  N  G  R  S  Q  S  G  A  N  S  Q  A  P  N  S  S  G  S  S  R  S  Q  D  A  F  G  L  A  V  S  T  P  S  A  Q  Q  T  Q  Q  A  T  M  S  S  V  Q  P  N  L  S  K  S  N  N  A  T  L  S  H  G  N  L  L  E  A  K  M  P  K  A  V  S  V  A  G  N  G  F  P  S  D  S  L  F  G  D  V  F  S  V  A  S  V  Q  P  N  Q  S  S  T  P  T  I  S  S  A </first_frame>
            <second_frame>  K  *  K  P  C  F  D  H  N  T  *  N  Y  H  G  E  C  T  L  F  F  H  F  T  P  F  I  L  S  S  L  R  H  R  Q  V  A  V  G  *  H  S  K  T  L  *  V  F  R  S  N  F  A  I  N  D  S  I  T  I  A  L  P  T  D  L  I  Q  N  R  N  Q  S  G  E  D  I  S  I  D  *  W  L  H  R  I  R  V  R  I  W  I  N  L  T  P  I  F  G  E  L  I  W  I  R  M  V  G  S  V  A  L  R  P  L  H  F  S  K  A  Q  I  C  P  N  Q  S  S  L  R :   F  G  H  M  L  I  K  V  V  L  A  T  L  V  A  K  N  F  T  I  L  S  S  L  L  R  *  H  K  N  E  S  *  L  Q  K  *  *  R  L  H  Y  S  L  Q  L  Q  P  K  F  L  L  P  K  *  T  L  Q  S  Y  Q  V  L  N  Q  L  I  R  L  V  L  Q  F  L  Q  L  V  V  L  L  Q  Q  Q  L  K  L  S  A  L  G  V  H  K  A  Y  Q  L  S  K  V  M  W  G  L  L  G  P  Q  I  L  A  L  V  S  N  L  N  Q  M  F  P  D  K  E  C  *  L  E  V  L  L  Q  L  L  A  L  P  V  P  L  I  C  L  L  V  R  M  V  A  H  N  Q  V  P  I  P  K  L  L  I  Q  V  A  V  L  E  V  R  M  H  L  V  W  L  Y  Q  H  L  L  H  N  K  H  N  K  Q  P  C  H  Q  C  N  Q  I  Y  Q  N  Q  I  M  Q  L  C  R  M  A  T  C  L  K  P  R  C  L  K  L  F  Q  L  Q  E  M  D  F  H  P  I  H  S  L  E  M  F  F  Q  L  P  Q  F  N  Q  I  K  A  P  H  Q  L  Y  L  Q   </second_frame>
            <third_frame>   N  E  N  H  A  L  I  T  T  H  K  T  T  T  A  N  A  L  C  F  F  T  L  P  H  S  F  S  L  A  S  G  T  G  K  S  P  S  A  D  I  L  K  P  F  E  F  L  D  Q  T  L  L  *  M  I  R  *  R  L  L  Y  P  Q  I  *  F  R  T  A  I  N  R  G  K  I  S  Q  L  T  N  G  C  T  E  S  E  S  E  Y  G  S  I  *  R  L  F  S  A  S  *  F  G  S  G  W  S  D  Q  W  P  *  G  R  C  I  S  Q  R  L  K  F  A  P  T  S  P  R  S   : D  L  D  I  C  *  S  K  S  Y  W  L  P  *  S  P  R  I  L  Q  Y  S  Q  A  C  Y  G  S  T  K  T  R  V  D  S  R  N  S  E  G  C  T  I  H  S  S  F  S  Q  N  S  C  S  P  N  K  P  C  S  H  T  R  S  S  T  N  *  *  G  W  F  Y  S  S  S  S  W  W  C  Y  S  N  S  N  S  N  F  R  R  *  G  S  T  R  L  T  S  S  A  K  L  C  G  A  S  *  A  L  K  S  *  P  W  F  P  I  S  T  K  C  F  R  T  R  N  A  S  W  K  Y  Y  C  S  F  S  P  S  Q  F  H  *  F  V  C  W  S  E  W  S  L  T  I  R  C  Q  F  P  S  S  *  F  K  W  Q  F  *  K  S  G  C  I  W  S  G  C  I  N  T  F  C  T  T  N  T  T  S  N  H  V  I  S  A  T  K  S  I  K  I  K  *  C  N  F  V  A  W  Q  P  A  *  S  Q  D  A  *  S  C  F  S  C  R  K  W  I  S  I  R  F  T  L  W  R  C  F  F  S  C  L  S  S  T  K  S  K  L  H  T  N  Y  I  F  S  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02HBa0332B10.1" strand="+"/>
                <serials PGL_serial="10" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="111960" stop="112109"/>
                    <exon start="115238" stop="115993"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>906</number_coding_nucleotides>
                  <number_encoded_amino_acids>302</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>LMAAQNQSPNMDQFDAYFRRADLDQDGRISGPEAVAFLKGSNLPQPVLAQIWTYADQSRTGYLSRQEFYNTLKLVTVAQKRELTPEIVKAALFTPASAKIPAPQINLAVIPGPQPTNKVGSTVPPVGGATPTATQTFGVRGPQGLPAQQSYVGPPRPSNPSPGFQSQPNVSGQGMLVGSTIAASRPPSSTDLFAGQNGRSQSGANSQAPNSSGSSRSQDAFGLAVSTPSAQQTQQATMSSVQPNLSKSNNATLSHGNLLEAKMPKAVSVAGNGFPSDSLFGDVFSVASVQPNQSSTPTISSA</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="11" PGL_strand="+" PGL_start="131118" PGL_stop="131966"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="131118" e_stop="131651"/>
            <exon e_start="131816" e_stop="131966"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="1.000" acc_prob="0.985" e_score="0.994"/>
          <exon-only e_score="0.993"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.994">
            <gDNA_exon_boundary e_start="131118" e_stop="131651" e_length="534"/>
          </exon>
          <intron i_serial="1" don_prob="1.000" acc_prob="0.985">
            <gDNA_intron_boundary i_start="131652" i_stop="131815" i_length="164"/>
          </intron>
          <exon e_serial="2" e_score="0.993">
            <gDNA_exon_boundary e_start="131816" e_stop="131966" e_length="151"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="131118" stop="131651"/>
              <exon start="131816" stop="131966"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U570325" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="11" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>CGATCAAAGTTCCTCCAGAGACCACCTGATCACTTCTGTCATTTTTAGATAAAAAAACTTAACCTTCATGGTGTCTTCAGAGATGAGTAGATGACCGAATCAACTTTTTCTCCTCCCTAAACTTTGAGCAATTCTATTATTAACTTTTTTCAAGTTTTTAATAAATTTTAACTCATTGAATTGTTGAATAATCTCCGCAGAATTCACATTTGTGAAAGAGCTCAATCTTGACGTACAAAATGTCATTGCCCCTCCTAAACCAAAATCTTCACTGGTTCGGGAGAAAGCATCTTCTTTGAATGACCATGATACTGGAAAATCATCTGCTGATGCTGGCACTGATGCAAAGTCAGAGAAGTTGCCAAGCGCTGGTAAAACCAGAGTGATGAGTGATGTGGAGACTACCCATACAGCAAGAAGTTCAACTAATAGTCCAACCAGGAGTAATGCAGTTGAGAGTCCAACAAAGGAATTCGAAGAATCACTGAATAGGAAGGACGGTACTTTTGATGGTTCTCCCCATGCTGCCCAAAG : TGAACACTGGGGAGCTGAATCTGCGTTCTCTGGGGACAAAAGTTTTGATGAATCTGGTTGGGGTACATTTGATACAGACCTTGATGCAGATGCTGCATGGAATATCAATTCTGCTGCTAAGGTAAATGGATACATCTTCATTTTAGTTACC</gDNA_template>
            <first_frame> R  S  K  F  L  Q  R  P  P  D  H  F  C  H  F  *  I  K  K  L  N  L  H  G  V  F  R  D  E  *  M  T  E  S  T  F  S  P  P  *  T  L  S  N  S  I  I  N  F  F  Q  V  F  N  K  F  *  L  I  E  L  L  N  N  L  R  R  I  H  I  C  E  R  A  Q  S  *  R  T  K  C  H  C  P  S  *  T  K  I  F  T  G  S  G  E  S  I  F  F  E  *  P  *  Y  W  K  I  I  C  *  C  W  H  *  C  K  V  R  E  V  A  K  R  W  *  N  Q  S  D  E  *  C  G  D  Y  P  Y  S  K  K  F  N  *  *  S  N  Q  E  *  C  S  *  E  S  N  K  G  I  R  R  I  T  E  *  E  G  R  Y  F  *  W  F  S  P  C  C  P  K  :  *  T  L  G  S  *  I  C  V  L  W  G  Q  K  F  *  *  I  W  L  G  Y  I  *  Y  R  P  *  C  R  C  C  M  E  Y  Q  F  C  C  *  G  K  W  I  H  L  H  F  S  Y  </first_frame>
            <second_frame>  D  Q  S  S  S  R  D  H  L  I  T  S  V  I  F  R  *  K  N  L  T  F  M  V  S  S  E  M  S  R  *  P  N  Q  L  F  L  L  P  K  L  *  A  I  L  L  L  T  F  F  K  F  L  I  N  F  N  S  L  N  C  *  I  I  S  A  E  F  T  F  V  K  E  L  N  L  D  V  Q  N  V  I  A  P  P  K  P  K  S  S  L  V  R  E  K  A  S  S  L  N  D  H  D  T  G  K  S  S  A  D  A  G  T  D  A  K  S  E  K  L  P  S  A  G  K  T  R  V  M  S  D  V  E  T  T  H  T  A  R  S  S  T  N  S  P  T  R  S  N  A  V  E  S  P  T  K  E  F  E  E  S  L  N  R  K  D  G  T  F  D  G  S  P  H  A  A  Q  S :   E  H  W  G  A  E  S  A  F  S  G  D  K  S  F  D  E  S  G  W  G  T  F  D  T  D  L  D  A  D  A  A  W  N  I  N  S  A  A  K  V  N  G  Y  I  F  I  L  V  T </second_frame>
            <third_frame>   I  K  V  P  P  E  T  T  *  S  L  L  S  F  L  D  K  K  T  *  P  S  W  C  L  Q  R  *  V  D  D  R  I  N  F  F  S  S  L  N  F  E  Q  F  Y  Y  *  L  F  S  S  F  *  *  I  L  T  H  *  I  V  E  *  S  P  Q  N  S  H  L  *  K  S  S  I  L  T  Y  K  M  S  L  P  L  L  N  Q  N  L  H  W  F  G  R  K  H  L  L  *  M  T  M  I  L  E  N  H  L  L  M  L  A  L  M  Q  S  Q  R  S  C  Q  A  L  V  K  P  E  *  *  V  M  W  R  L  P  I  Q  Q  E  V  Q  L  I  V  Q  P  G  V  M  Q  L  R  V  Q  Q  R  N  S  K  N  H  *  I  G  R  T  V  L  L  M  V  L  P  M  L  P  K   : V  N  T  G  E  L  N  L  R  S  L  G  T  K  V  L  M  N  L  V  G  V  H  L  I  Q  T  L  M  Q  M  L  H  G  I  S  I  L  L  L  R  *  M  D  T  S  S  F  *  L   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02HBa0332B10.1" strand="+"/>
                <serials PGL_serial="11" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="131305" stop="131651"/>
                    <exon start="131816" stop="131966"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>498</number_coding_nucleotides>
                  <number_encoded_amino_acids>166</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>IISAEFTFVKELNLDVQNVIAPPKPKSSLVREKASSLNDHDTGKSSADAGTDAKSEKLPSAGKTRVMSDVETTHTARSSTNSPTRSNAVESPTKEFEESLNRKDGTFDGSPHAAQSEHWGAESAFSGDKSFDESGWGTFDTDLDADAAWNINSAAKVNGYIFILVT</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="12" PGL_strand="+" PGL_start="133023" PGL_stop="133351"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="133023" e_stop="133351"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.945"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.945">
            <gDNA_exon_boundary e_start="133023" e_stop="133351" e_length="329"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="133023" stop="133351"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U602556" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="12" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>TTGGGTCTCATGATCCCTTTAAGACATCTGCGGAGAATCAGACACCGAAGAGAGATTCTGATAATTGGAAAGCATTTTAAGATGGTAATGGATTTCCTTACTCCGGATGCAATCTCTTTTTCTTTTCTTTTTTCCCTCCATTTAAAACTATTTTTGGCCAGGTTTTTAGGTTGTAGGGTTAGTAAATTGGTTGTGATTAGATAGTTTTTCTGTGTGGCATGAGATAGCATTATGATAAGTTGTACTCCCTAATATTATTTCATTAGTTTTTTTTTTTTTTTAAAGCCAGGGGTTTTATTTTGACCTTTTCCTTTCTTGCATTAATTCAT</gDNA_template>
            <first_frame> L  G  L  M  I  P  L  R  H  L  R  R  I  R  H  R  R  E  I  L  I  I  G  K  H  F  K  M  V  M  D  F  L  T  P  D  A  I  S  F  S  F  L  F  S  L  H  L  K  L  F  L  A  R  F  L  G  C  R  V  S  K  L  V  V  I  R  *  F  F  C  V  A  *  D  S  I  M  I  S  C  T  P  *  Y  Y  F  I  S  F  F  F  F  L  K  P  G  V  L  F  *  P  F  P  F  L  H  *  F   </first_frame>
            <second_frame>  W  V  S  *  S  L  *  D  I  C  G  E  S  D  T  E  E  R  F  *  *  L  E  S  I  L  R  W  *  W  I  S  L  L  R  M  Q  S  L  F  L  F  F  F  P  S  I  *  N  Y  F  W  P  G  F  *  V  V  G  L  V  N  W  L  *  L  D  S  F  S  V  W  H  E  I  A  L  *  *  V  V  L  P  N  I  I  S  L  V  F  F  F  F  *  S  Q  G  F  Y  F  D  L  F  L  S  C  I  N  S  </second_frame>
            <third_frame>   G  S  H  D  P  F  K  T  S  A  E  N  Q  T  P  K  R  D  S  D  N  W  K  A  F  *  D  G  N  G  F  P  Y  S  G  C  N  L  F  F  F  S  F  F  P  P  F  K  T  I  F  G  Q  V  F  R  L  *  G  *  *  I  G  C  D  *  I  V  F  L  C  G  M  R  *  H  Y  D  K  L  Y  S  L  I  L  F  H  *  F  F  F  F  F  K  A  R  G  F  I  L  T  F  S  F  L  A  L  I  H </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02HBa0332B10.1" strand="+"/>
                <serials PGL_serial="12" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="133023" stop="133226"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>201</number_coding_nucleotides>
                  <number_encoded_amino_acids>67</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>LGLMIPLRHLRRIRHRREILIIGKHFKMVMDFLTPDAISFSFLFSLHLKLFLARFLGCRVSKLVVIR*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="13" PGL_strand="-" PGL_start="135570" PGL_stop="134889"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="135570" e_stop="134889"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.994"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.994">
            <gDNA_exon_boundary e_start="135570" e_stop="134889" e_length="682"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="135570" stop="134889"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U598262" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="13" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>GTACAGATTTTTCAGTTAACAAATCTGGTCTTCTGCAATTTTCTCTCTGCAGCCATTTTCTCATCTTTAAAACTCCCTCTCAACTCCACTACACACCATTTTCTAACTGTCAAACATTTTCTAACACTACCGTTTCATCTGCAAATCGATTATTGAGTAGTTAAAATCAATAAAGTTTTGATCTTTTCTGTTTTTTGGCACTTAAAATTGGATTCTTGATTTTCATTTGGTTCAATGGGGTTTGGTAAAAATAGAGCAAGTTCATCTTCCCATGTTCTGCGAATCCCAAGAGAAGATACACCACTTTTAGCAAACACCCAACACCTTTCTTCATCTTCCAAAACTTTTGCTAATGTTTTTATAGCAGTAGTTGGAGCTGGAGTTCTTGGCCTTCCTTATAGTTTCAAGAAAACAGGATGGTTTATGGGTTCTTTAATGCTTCTATCAGTATCCTTTCTTACTTACTATTGTATGATGCTTCTGATCTATTCGAGGCGTAAGCTTGAATCCCATTACAAAGTTATCAAGATTTCATCTTTTGGTGATTTGGGATATGCTGTTTGTGGATCAATAGGTAGATGTACTGTTGATGCTATGATTGTTCTTTCCCAAGCTGGATTTTGCATCAGTTACTTGATTTTTATAGCCAATACTTTAGAACACTTGTTCAATTATTCAAATC</gDNA_template>
            <first_frame> V  Q  I  F  Q  L  T  N  L  V  F  C  N  F  L  S  A  A  I  F  S  S  L  K  L  P  L  N  S  T  T  H  H  F  L  T  V  K  H  F  L  T  L  P  F  H  L  Q  I  D  Y  *  V  V  K  I  N  K  V  L  I  F  S  V  F  W  H  L  K  L  D  S  *  F  S  F  G  S  M  G  F  G  K  N  R  A  S  S  S  S  H  V  L  R  I  P  R  E  D  T  P  L  L  A  N  T  Q  H  L  S  S  S  S  K  T  F  A  N  V  F  I  A  V  V  G  A  G  V  L  G  L  P  Y  S  F  K  K  T  G  W  F  M  G  S  L  M  L  L  S  V  S  F  L  T  Y  Y  C  M  M  L  L  I  Y  S  R  R  K  L  E  S  H  Y  K  V  I  K  I  S  S  F  G  D  L  G  Y  A  V  C  G  S  I  G  R  C  T  V  D  A  M  I  V  L  S  Q  A  G  F  C  I  S  Y  L  I  F  I  A  N  T  L  E  H  L  F  N  Y  S  N  </first_frame>
            <second_frame>  Y  R  F  F  S  *  Q  I  W  S  S  A  I  F  S  L  Q  P  F  S  H  L  *  N  S  L  S  T  P  L  H  T  I  F  *  L  S  N  I  F  *  H  Y  R  F  I  C  K  S  I  I  E  *  L  K  S  I  K  F  *  S  F  L  F  F  G  T  *  N  W  I  L  D  F  H  L  V  Q  W  G  L  V  K  I  E  Q  V  H  L  P  M  F  C  E  S  Q  E  K  I  H  H  F  *  Q  T  P  N  T  F  L  H  L  P  K  L  L  L  M  F  L  *  Q  *  L  E  L  E  F  L  A  F  L  I  V  S  R  K  Q  D  G  L  W  V  L  *  C  F  Y  Q  Y  P  F  L  L  T  I  V  *  C  F  *  S  I  R  G  V  S  L  N  P  I  T  K  L  S  R  F  H  L  L  V  I  W  D  M  L  F  V  D  Q  *  V  D  V  L  L  M  L  *  L  F  F  P  K  L  D  F  A  S  V  T  *  F  L  *  P  I  L  *  N  T  C  S  I  I  Q  I </second_frame>
            <third_frame>   T  D  F  S  V  N  K  S  G  L  L  Q  F  S  L  C  S  H  F  L  I  F  K  T  P  S  Q  L  H  Y  T  P  F  S  N  C  Q  T  F  S  N  T  T  V  S  S  A  N  R  L  L  S  S  *  N  Q  *  S  F  D  L  F  C  F  L  A  L  K  I  G  F  L  I  F  I  W  F  N  G  V  W  *  K  *  S  K  F  I  F  P  C  S  A  N  P  K  R  R  Y  T  T  F  S  K  H  P  T  P  F  F  I  F  Q  N  F  C  *  C  F  Y  S  S  S  W  S  W  S  S  W  P  S  L  *  F  Q  E  N  R  M  V  Y  G  F  F  N  A  S  I  S  I  L  S  Y  L  L  L  Y  D  A  S  D  L  F  E  A  *  A  *  I  P  L  Q  S  Y  Q  D  F  I  F  W  *  F  G  I  C  C  L  W  I  N  R  *  M  Y  C  *  C  Y  D  C  S  F  P  S  W  I  L  H  Q  L  L  D  F  Y  S  Q  Y  F  R  T  L  V  Q  L  F  K   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02HBa0332B10.1" strand="-"/>
                <serials PGL_serial="13" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="135351" stop="134890"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>462</number_coding_nucleotides>
                  <number_encoded_amino_acids>154</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>FSFGSMGFGKNRASSSSHVLRIPREDTPLLANTQHLSSSSKTFANVFIAVVGAGVLGLPYSFKKTGWFMGSLMLLSVSFLTYYCMMLLIYSRRKLESHYKVIKISSFGDLGYAVCGSIGRCTVDAMIVLSQAGFCISYLIFIANTLEHLFNYSN</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
  </PGL_module>
</GTH_output>
<!--
$ general statistics:
$ 71 chains have been computed
$ 
$ memory statistics:
$ 33552 bytes spliced alignments in total
$ 16 spliced alignments have been stored
$ 2097 bytes was the average size of a spliced alignment
$ 20432 bytes predicted gene locations in total
$ 13 predicted gene locations have been stored
$ 1571 bytes was the average size of a predicted gene location
$ 0 megabytes was the average size of the backtrace matrix
$ 77 backtrace matrices have been allocated
$ 
$ date finished: 2009-12-01 10:35:30
-->
