<?xml version="1.0" encoding="ISO-8859-1"?>
<GTH_output xmlns="http://www.genomethreader.org/GTH_output/" GTH_XML_version="1.1">
  <header xmlns="http://www.genomethreader.org/GTH_output/header/">
    <source program="GenomeThreader" version="0.9.54" build_date="2006-07-28 11:55:15" run_date="2009-12-01 10:33:53"/>
    <gDNA_template_files>
      <temp_name>/tmp/bac-submission-temp-C02SLe0010E18-vqLN4/GenomeThreader_SGN_E_tomato/un_xed_seqs</temp_name>
    </gDNA_template_files>
    <reference_files>
      <file ref_name="/tmp/bac-submission-temp-C02SLe0010E18-vqLN4/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" type="ESTcDNA"/>
    </reference_files>
    <splice_site_parameters parameter_type="Bayesian" species="arabidopsis"/>
    <parameters>
      <parameter name="bssmfile" value="arabidopsis"/>
      <parameter name="scorematrixfile" value="BLOSUM62"/>
      <parameter name="searchmode" value="forward=True,reverse=True)"/>
      <parameter name="translationtable" value="1"/>
      <parameter name="frompos" value="0"/>
      <parameter name="topos" value="0"/>
      <parameter name="width" value="0"/>
      <parameter name="verbose" value="False"/>
      <parameter name="skipalignmentout" value="False"/>
      <parameter name="showintronmaxlen" value="120"/>
      <parameter name="minorflen" value="64"/>
      <parameter name="showseqnums" value="False"/>
      <parameter name="gs2out" value="False"/>
      <parameter name="maskpolyatails" value="False"/>
      <parameter name="noautoindex" value="False"/>
      <parameter name="minmatchlen" value="20"/>
      <parameter name="seedlength" value="16"/>
      <parameter name="exdrop" value="2"/>
      <parameter name="online" value="False"/>
      <parameter name="inverse" value="False"/>
      <parameter name="exact" value="False"/>
      <parameter name="chainwf" value="0.500000"/>
      <parameter name="gcmaxgapwidth" value="1000000"/>
      <parameter name="gcmincoverage" value="50"/>
      <parameter name="introncutout" value="False"/>
      <parameter name="autointroncutout" value="0"/>
      <parameter name="icinitialdelta" value="50"/>
      <parameter name="iciterations" value="2"/>
      <parameter name="icdeltaincrease" value="50"/>
      <parameter name="icminremintronlen" value="10"/>
      <parameter name="nou12intronmodel" value="False"/>
      <parameter name="u12donorprob" value="0.990000"/>
      <parameter name="u12donorprob1mism" value="0.900000"/>
      <parameter name="probies" value="0.500000"/>
      <parameter name="probdelgen" value="0.030000"/>
      <parameter name="identityweight" value="2.000000"/>
      <parameter name="mismatchweight" value="-2.000000"/>
      <parameter name="undetcharweight" value="0.000000"/>
      <parameter name="deletionweight" value="-4.000000"/>
      <parameter name="dpminexonlen" value="5"/>
      <parameter name="dpminintronlen" value="50"/>
      <parameter name="shortexonpenal" value="100"/>
      <parameter name="shortintronpenal" value="100"/>
      <parameter name="wzerotransition" value="80"/>
      <parameter name="wdecreasedoutput" value="80"/>
      <parameter name="leadcutoffsmode" value="RELAXED"/>
      <parameter name="termcutoffsmode" value="STRICT"/>
      <parameter name="cutoffsminexonlen" value="5"/>
      <parameter name="scoreminexonlen" value="50"/>
      <parameter name="minaveragessp" value="0.500000"/>
      <parameter name="minalignmentscore" value="0.900000"/>
      <parameter name="maxalignmentscore" value="1.000000"/>
      <parameter name="mincoverage" value="0.900000"/>
      <parameter name="maxcoverage" value="100.000000"/>
      <parameter name="intermediate" value="False"/>
      <parameter name="sortags" value="False"/>
      <parameter name="sortagswf" value="1.000000"/>
      <parameter name="first" value="0"/>
      <parameter name="exondistri" value="False"/>
      <parameter name="introndistri" value="False"/>
      <parameter name="refseqcovdistri" value="False"/>
    </parameters>
    <overall_reference_type>ESTcDNA</overall_reference_type>
  </header>
  <alignment_module>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0010E18-vqLN4/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E275036" ref_strand="+" ref_description="SGN-E275036 [cLEN-16-J16]">
      <seq>gggccagggctcatgatttatcattctgttggggaaacctgtcattactgtacttgcaatgtttaattttattttccagatgccatttttgctataattcttattgttggtgctcgcaattctcacacccacacaacaatggccttatcttctacttgcttttctcactctcaattctcactcaagatggactgctggacgcctgctctgtcatcaaatatcctatgttatatcaggaggaagcagcctccatcctacacacttaaaacaataaactcaaaccttttaagtcaacaagttcataaacgaagaaccaagcatggcaatggatggagtttcctcggaggatcaagagtaaagggtcagcctaacctccaaaatcttccacaaaga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0010E18-vqLN4/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02SLe0010E18.1" temp_strand="+" temp_description="C02SLe0010E18.1  AC215443.1 htgs_phase:3 submitted_to_sgn_as:C02SLe0010E18 sequenced_by:kribb upload_account_name:korea">
        <position start="14866" stop="16454"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="15166" g_stop="15350" g_length="185"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="186" r_length="186" r_score="0.962"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="15351" i_stop="15947" i_length="597">
            <donor d_prob="1.000" d_score="0.98"/>
            <acceptor a_prob="0.504" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="15948" g_stop="16154" g_length="207"/>
          <reference_exon_boundary r_type="cDNA" r_start="187" r_stop="393" r_length="207" r_score="0.990"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLe0010E18.1" gen_strand="+" ref_id="SGN-E275036" ref_strand="+">
        <total_alignment_score>0.977</total_alignment_score>
        <cumulative_length_of_scored_exons>392</cumulative_length_of_scored_exons>
        <coverage percentage="0.997" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0010E18.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E275036" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="15166" e_stop="15350"/>
          <exon e_start="15948" e_stop="16154"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGGCCAGGGCTCATGATTTATCATTCTGTTGGTGAAACCTCTCATTACTGTACTTGCAATGTTTAATTTTATTTTCCAGATGCCATTTTTGCTATAATTCTTATTGTTGTTGCTCGCAATTCTCACACCCA-TCAACCATGGCCTTATCTTCTACTTGCTTTTCTCACTCTCAATTCTCACTCAAGGTATGCCCTTTCTCTGCTACTCTCTATTCATAGCTTGTAATATAAGTTTTTCTTCATTAAATTGCTGTTTATTGTTTGTTCTCAGTTTTTTTAATTCATACCCCGTATGTATGTTAAACTGATACACACATTATTTGCTACTTGTACTGTGTGGTTAGATCTGAAGTTTCTCCGTTGCTATATGAATACATTGAAATTGAAAATGAAAATTTGAGAGCAATTAAGATGCTAGTAAAGTCTTCATGTAGATAGTGCTGAGCAACTATCTATCATTTGAAGATATTTTGGCAATAGGGAGTGTTTGGAAGAAAAAACTTTGAAGAATGAGGTGCTAGTGTTTGGAGGTTTAGTGAATTGAATGTCAATCAGGTACCGTTGAAGTCTCAATGTCATTTGAATTATGCTATTAGAAATTAGGCTTGGTATATTGCATGCCAAGCAAATCTTCAATAAAATTTATCTATACTTGGTAACGGAAAAAAGAAAATGAGGTTTTCCAACTCACTAAGCACTAACGAGTTTGAAGCTACAATGAAATTCCAAACCTGCTAAACTATTGTTTTATTAGAAGTAATCAATCTCTACTACTTACTGTAGATGGACTGCTGGACGCCTGCTCTGTCATCAAATATCCTATGTTATATCAGGAGGAAGCAGCCTCCATCCTCCACACTTAAAACAATAAACTCAAACCTTTTAAGTCAACAAGTTCATAAACGAAGAACCAAGCATGGCAATGGATGGAGTTTCCTCGGAGGATCAAGAGTAAAGTGTCAGCCTAACCTCCAAAATCTTCCACAAAGA</genome_strand>
        <mrna_strand>GGGCCAGGGCTCATGATTTATCATTCTGTTGGGGAAACCTGTCATTACTGTACTTGCAATGTTTAATTTTATTTTCCAGATGCCATTTTTGCTATAATTCTTATTGTTGGTGCTCGCAATTCTCACACCCACACAACAATGGCCTTATCTTCTACTTGCTTTTCTCACTCTCAATTCTCACTCAAG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATGGACTGCTGGACGCCTGCTCTGTCATCAAATATCCTATGTTATATCAGGAGGAAGCAGCCTCCATCCTACACACTTAAAACAATAAACTCAAACCTTTTAAGTCAACAAGTTCATAAACGAAGAACCAAGCATGGCAATGGATGGAGTTTCCTCGGAGGATCAAGAGTAAAGGGTCAGCCTAACCTCCAAAATCTTCCACAAAGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0010E18-vqLN4/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E702377" ref_strand="+" ref_description="SGN-E702377 [FA18CC01]">
      <seq>ctctcattactgtacttgcaatgtttaattttattttccagatgccatttttgctataattcttattgttgttgctcgcaattctcacacccatcaaccatggccttatcttctacttgcttttctcactctcaattctcactcaagatggactgctggacgcctgctctgtcatcaaatatcctatgttatatcaggaggaagcagcctccatcctccacacttaaaacaataaactcaaaccttttaagtcaacaagttcataaacgaagaaccaagcatggcaatggatggagtttcctcggaggatcaagagtaaagtgtcagcctaacctccaaaatcttccacaaagaagaagctacagggtgtctgctatgtggttgcctagttctcaagtagctagtagtgtctttacgctaggaacagcaggcgttcttccattttacaccgtcatgattgcagcacctaaagcagaacttaccagaaaattgatggatagtgcaataccatatattgtgctcggacttctgtacgcatatctgttgtacttgtcttggacaccagatacaattcggctgatgtttgctagtaaatactggcttccagagctgtctggtatagcaaagatgttctccagtgagatgacattagcatctgcttggattcacctattggctgtagatctttttgctgcaaggcaagtttatcatgatggcttgcaaaatggtatagaaacgcgccattcagtgtctctctgcttgctattttgccccattgggattgttattcatctcctcaccaaagctgtactactaagtagtgcagaaaaaacagtgtttagaactaactgacagagattccacaattgtttcctgntaacgactaatgtaattgtg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0010E18-vqLN4/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02SLe0010E18.1" temp_strand="+" temp_description="C02SLe0010E18.1  AC215443.1 htgs_phase:3 submitted_to_sgn_as:C02SLe0010E18 sequenced_by:kribb upload_account_name:korea">
        <position start="14904" stop="18459"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="15204" g_stop="15350" g_length="147"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="147" r_length="147" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="15351" i_stop="15947" i_length="597">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.504" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="15948" g_stop="16179" g_length="232"/>
          <reference_exon_boundary r_type="cDNA" r_start="148" r_stop="379" r_length="232" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="16180" i_stop="16883" i_length="704">
            <donor d_prob="0.973" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="16884" g_stop="16984" g_length="101"/>
          <reference_exon_boundary r_type="cDNA" r_start="380" r_stop="480" r_length="101" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="16985" i_stop="17268" i_length="284">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.755" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="17269" g_stop="17397" g_length="129"/>
          <reference_exon_boundary r_type="cDNA" r_start="481" r_stop="609" r_length="129" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="17398" i_stop="17480" i_length="83">
            <donor d_prob="0.985" d_score="1.00"/>
            <acceptor a_prob="0.971" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="17481" g_stop="17569" g_length="89"/>
          <reference_exon_boundary r_type="cDNA" r_start="610" r_stop="698" r_length="89" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="17570" i_stop="17960" i_length="391">
            <donor d_prob="0.968" d_score="1.00"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="17961" g_stop="18159" g_length="199"/>
          <reference_exon_boundary r_type="cDNA" r_start="699" r_stop="897" r_length="199" r_score="0.990"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLe0010E18.1" gen_strand="+" ref_id="SGN-E702377" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>897</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0010E18.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E702377" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="15204" e_stop="15350"/>
          <exon e_start="15948" e_stop="16179"/>
          <exon e_start="16884" e_stop="16984"/>
          <exon e_start="17269" e_stop="17397"/>
          <exon e_start="17481" e_stop="17569"/>
          <exon e_start="17961" e_stop="18159"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTCTCATTACTGTACTTGCAATGTTTAATTTTATTTTCCAGATGCCATTTTTGCTATAATTCTTATTGTTGTTGCTCGCAATTCTCACACCCATCAACCATGGCCTTATCTTCTACTTGCTTTTCTCACTCTCAATTCTCACTCAAGGTATGCCCTTTCTCTGCTACTCTCTATTCATAGCTTGTAATATAAGTTTTTCTTCATTAAATTGCTGTTTATTGTTTGTTCTCAGTTTTTTTAATTCATACCCCGTATGTATGTTAAACTGATACACACATTATTTGCTACTTGTACTGTGTGGTTAGATCTGAAGTTTCTCCGTTGCTATATGAATACATTGAAATTGAAAATGAAAATTTGAGAGCAATTAAGATGCTAGTAAAGTCTTCATGTAGATAGTGCTGAGCAACTATCTATCATTTGAAGATATTTTGGCAATAGGGAGTGTTTGGAAGAAAAAACTTTGAAGAATGAGGTGCTAGTGTTTGGAGGTTTAGTGAATTGAATGTCAATCAGGTACCGTTGAAGTCTCAATGTCATTTGAATTATGCTATTAGAAATTAGGCTTGGTATATTGCATGCCAAGCAAATCTTCAATAAAATTTATCTATACTTGGTAACGGAAAAAAGAAAATGAGGTTTTCCAACTCACTAAGCACTAACGAGTTTGAAGCTACAATGAAATTCCAAACCTGCTAAACTATTGTTTTATTAGAAGTAATCAATCTCTACTACTTACTGTAGATGGACTGCTGGACGCCTGCTCTGTCATCAAATATCCTATGTTATATCAGGAGGAAGCAGCCTCCATCCTCCACACTTAAAACAATAAACTCAAACCTTTTAAGTCAACAAGTTCATAAACGAAGAACCAAGCATGGCAATGGATGGAGTTTCCTCGGAGGATCAAGAGTAAAGTGTCAGCCTAACCTCCAAAATCTTCCACAAAGAAGAAGCTACAGGGTGTCTGCTATGTGTAATCTTTTCTTCCACTGCTTATCTTTATTTCTCAACTCGTGTCATGCTACTTCCTTTTTGGTTCTTTTGGATAATTCTTGGGAATCAGCTATGTTCGGTCAGGAATGTGGTTATTTACAGTCATCTCATAATGATTCGCTTTAGGTTATTATGACACCTACCTGCCAAAACATATGTTAATCAACAAACTGAATTCAAAAAATCTGTTACAATGCATATTAACTTTGTACAAATACTTTTATGTGCCCACTTGGCTTAATGTCCAAACCTGTTATCCTCCTATTAGATGAACCAGGAAAAACAAATTCAAAAAGAAAAGTACTTTTAGAAGTATAACAATTTGCTGTCTTCTTTCAATCTGGTTGATAATAGAAATATCTCCCACCTTGTCCAATGTTCCGTTGAAATCTCGTTTCTCTCATTTCGTTGCTGGATTTTCTATCTCATGTCAATGAAAGAATATTCTTACTTGCTAATGTACATGTGTAAACTGCTAGTGTCTTACATTATACCGAAAGACAGTTTTGATGTATTGTATATGGAATATCAAACTGAATATCGAATTGATCTATTTGATTATAAATATATATGTATATAAATATTTATACATGTTTTTTAAGCTTCTTATTGTGTACTCTCTTTGCAAATGTTTTAGTGTCATCTATTTGAACTTTTGGGACAACTGATGTCTTATTTTTACAGGGTTGCCTAGTTCTCAAGTAGCTAGTAGTGTCTTTACGCTAGGAACAGCAGGCGTTCTTCCATTTTACACCGTCATGATTGCAGCACCTAAAGCAGAACTTGTAAGTAATCTCAGTTCTGTAAAGCAACACTGTTTTTTTTATTTTCTAGAGAGTATGCCCTATGGATATATTATCAACTTAGGAAGCTCTTGTTTATTTCTTTTCTTGGAAGACATAAAGAAAAGTTACACATGCCAAGTTCTCTCTCCTTATGTCATCCACAAAAGTAGAAGTCATGGGGCATAATTTCAGTTGCATTGATTTGTGATCTAATTGCAAGATACTGATTTTGTGCCTTTCCAAGATATATTGTAATATAGGGCATAATTAAATACTTAATGCAGACCAGAAAATTGATGGATAGTGCAATACCATATATTGTGCTCGGACTTCTGTACGCATATCTGTTGTACTTGTCTTGGACACCAGATACAATTCGGCTGATGTTTGCTAGTAAATACTGGCTTCCAGAGGTTTGTTCTTGTACTTAACAAATGATAGTTGTCATCTTGTGCTGATACCGTGATTTAGGCTGTTGACATTTCATTCTGTTCAGCTGTCTGGTATAGCAAAGATGTTCTCCAGTGAGATGACATTAGCATCTGCTTGGATTCACCTATTGGCTGTAGATCTTTTTGCTGCAAGGTCTCTCTCTTTCTATCTCAAAACCACACTTCATTATTGTAAATGTGTTGGATTGTCCGTGTTAGTTGAGGAAATGGCCATTTGTCTCTTTATAAGGTGTTGACATGTTGCACAATCCTCATCTTATGAGCTAGTGTTTGGAGTTGTGTTGGAGCCAGGCGGTAATATTTGGTTGTCCTACACTAGTTGAGGAATGGACTGTTCTTGCCTCATATAATCTTGGCCATTTCTCAATTTATGAGCTAGCTTTTAAGATTGTTTCAGATTCAAGGCCATTTCGTTAACAGTATGTTTGTGCAGCCAGTTGTTCTTTTCTGATCCTATTGGGTCGAGGAAAAAGGAGGAAGGTGCCTTGTTAAACTATTCTAATGCTGTTTTTTATTTGAAACAGGCAAGTTTATCATGATGGCTTGCAAAATGGTATAGAAACGCGCCATTCAGTGTCTCTCTGCTTGCTATTTTGCCCCATTGGGATTGTTATTCATCTCCTCACCAAAGCTGTACTACTAAGTAGTGCAGAAAAAACAGTGTTTAGAACTAACTGACAGAGATTCAACAATTGTTTCCTGTTAACGACTAATGTAATTGTG</genome_strand>
        <mrna_strand>CTCTCATTACTGTACTTGCAATGTTTAATTTTATTTTCCAGATGCCATTTTTGCTATAATTCTTATTGTTGTTGCTCGCAATTCTCACACCCATCAACCATGGCCTTATCTTCTACTTGCTTTTCTCACTCTCAATTCTCACTCAAG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATGGACTGCTGGACGCCTGCTCTGTCATCAAATATCCTATGTTATATCAGGAGGAAGCAGCCTCCATCCTCCACACTTAAAACAATAAACTCAAACCTTTTAAGTCAACAAGTTCATAAACGAAGAACCAAGCATGGCAATGGATGGAGTTTCCTCGGAGGATCAAGAGTAAAGTGTCAGCCTAACCTCCAAAATCTTCCACAAAGAAGAAGCTACAGGGTGTCTGCTATGT................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGTTGCCTAGTTCTCAAGTAGCTAGTAGTGTCTTTACGCTAGGAACAGCAGGCGTTCTTCCATTTTACACCGTCATGATTGCAGCACCTAAAGCAGAACTT............................................................................................................................................................................................................................................................................................ACCAGAAAATTGATGGATAGTGCAATACCATATATTGTGCTCGGACTTCTGTACGCATATCTGTTGTACTTGTCTTGGACACCAGATACAATTCGGCTGATGTTTGCTAGTAAATACTGGCTTCCAGAG...................................................................................CTGTCTGGTATAGCAAAGATGTTCTCCAGTGAGATGACATTAGCATCTGCTTGGATTCACCTATTGGCTGTAGATCTTTTTGCTGCAAG.......................................................................................................................................................................................................................................................................................................................................................................................................GCAAGTTTATCATGATGGCTTGCAAAATGGTATAGAAACGCGCCATTCAGTGTCTCTCTGCTTGCTATTTTGCCCCATTGGGATTGTTATTCATCTCCTCACCAAAGCTGTACTACTAAGTAGTGCAGAAAAAACAGTGTTTAGAACTAACTGACAGAGATTCCACAATTGTTTCCTGNTAACGACTAATGTAATTGTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0010E18-vqLN4/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E346757" ref_strand="+" ref_description="SGN-E346757 [cTOF-28-L24]">
      <seq>gcagttggaaaaaagtagtgagaaacaatggctacggtctgtacgttgattcttcccaaatttcctcaatcgagaggagtatcaacaactcgtgctgtgttaaagagggatcccaaaatgaaggttccttatgaactgaagcaggaacaatctcgtctttttcacaagcttccctctggtctaaacatggaggttctctaccagaggggcagtgaccagataagatctactaaaaacccacctttagtttttgttcatggaagctttcatgctgcttggtgctgggctgaacactggctccccttcttctcccaaaatggatatgattcttatgctctcagcttgttgggacagggagaaagtgattcacctgctgctgcagttgcaggtaccctcgagacacatgctggtgatattgctgacttcatccacaaagagatcaggttgccaccagtgttgcttggacattcatttggggggctaattgttcagtattacattgcaaatattagaagagaagcagtaaaaggttctgattcagaaaagaaaagcttattccccaatctttctggagcagtgctcgtttgctcagta</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0010E18-vqLN4/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02SLe0010E18.1" temp_strand="+" temp_description="C02SLe0010E18.1  AC215443.1 htgs_phase:3 submitted_to_sgn_as:C02SLe0010E18 sequenced_by:kribb upload_account_name:korea">
        <position start="34057" stop="35888"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="34357" g_stop="34710" g_length="354"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="354" r_length="354" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="34711" i_stop="35059" i_length="349">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="35060" g_stop="35104" g_length="45"/>
          <reference_exon_boundary r_type="cDNA" r_start="355" r_stop="399" r_length="45" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="35105" i_stop="35269" i_length="165">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.926" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="35270" g_stop="35399" g_length="130"/>
          <reference_exon_boundary r_type="cDNA" r_start="400" r_stop="529" r_length="130" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="35400" i_stop="35523" i_length="124">
            <donor d_prob="0.000" d_score="1.00"/>
            <acceptor a_prob="0.958" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="35524" g_stop="35588" g_length="65"/>
          <reference_exon_boundary r_type="cDNA" r_start="530" r_stop="594" r_length="65" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLe0010E18.1" gen_strand="+" ref_id="SGN-E346757" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>594</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0010E18.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E346757" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="34357" e_stop="34710"/>
          <exon e_start="35060" e_stop="35104"/>
          <exon e_start="35270" e_stop="35399"/>
          <exon e_start="35524" e_stop="35588"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCAGTTGGAAAAAAGTAGTGAGAAACAATGGCTACGGTCTGTACGTTGATTCTTCCCAAATTTCCTCAATCGAGAGGAGTATCAACAACTCGTGCTGTGTTAAAGAGGGATCCCAAAATGAAGGTTCCTTATGAACTGAAGCAGGAACAATCTCGTCTTTTTCACAAGCTTCCCTCTGGTCTAAACATGGAGGTTCTCTACCAGAGGGGCAGTGACCAGATAAGATCTACTAAAAACCCACCTTTAGTTTTTGTTCATGGAAGCTTTCATGCTGCTTGGTGCTGGGCTGAACACTGGCTCCCCTTCTTCTCCCAAAATGGATATGATTCTTATGCTCTCAGCTTGTTGGGACAGGTACTCTACACTGCAATTACATGAATAAAAGTATGTAAAATACTGCTTAATTTCTTTTCGGTATCCAGATAATGCTTAATTCAGTACTGATGATCGATTAGCCGACTGAACTAATTTGCAGTTTGATTTATGTTCGACTAAATGTTTACCTTAGAAAAGACCTGATAATGTTGGAAGAATTGTAATCTCAGATAAATATTCAGCTTTTGTTTACTTGATCAAATAGATTCCACTAGTTACTTCGCCAAGATATTTCATTTATCATTTAAATGGTGAAATAGCAATGCAACCCTATCGAAGTAGCAAAGGTACGTTATTAATGTATATGTACCCTTTTTGACATTGCCAGGGAGAAAGTGATTCACCTGCTGCTGCAGTTGCAGGTACCCTCGAGGTATTTTACATTTCTTTCTGTTAGATTCTTGTTGGTTGTCAATCAGGAAGTTGCTTGAGTAATAACATTTACGCTGAGCTGACATTTCTCATTCAGGTTTCTCTTAGTGCATTGCTGAAACGGTTTTCAGTTCCTTCTAATTCTGTACTTTGCTGCATTCAGTAGACACATGCTGGTGATATTGCTGACTTCATCCACAAAGAGATCAGGTTGCCACCAGTGTTGCTTGGACATTCATTTGGGGGGCTAATTGTTCAGTATTACATTGCAAATATTAGAAGAGAAGCAGTAAAAGGTCATCGTGTTTTTGTTATTGTTTGCAAACTAAGGCATACTGCATTTTCTACTCTCAATTCCAAAAGTTCCTCACAGTGGTTACTTCTACTCAATCCATACAGTTTGCTCTTTTGGTGCTACAGGTTCTGATTCAGAAAAGAAAAGCTTATTCCCCAATCTTTCTGGAGCAGTGCTCGTTTGCTCAGTA</genome_strand>
        <mrna_strand>GCAGTTGGAAAAAAGTAGTGAGAAACAATGGCTACGGTCTGTACGTTGATTCTTCCCAAATTTCCTCAATCGAGAGGAGTATCAACAACTCGTGCTGTGTTAAAGAGGGATCCCAAAATGAAGGTTCCTTATGAACTGAAGCAGGAACAATCTCGTCTTTTTCACAAGCTTCCCTCTGGTCTAAACATGGAGGTTCTCTACCAGAGGGGCAGTGACCAGATAAGATCTACTAAAAACCCACCTTTAGTTTTTGTTCATGGAAGCTTTCATGCTGCTTGGTGCTGGGCTGAACACTGGCTCCCCTTCTTCTCCCAAAATGGATATGATTCTTATGCTCTCAGCTTGTTGGGACAG.............................................................................................................................................................................................................................................................................................................................................................GGAGAAAGTGATTCACCTGCTGCTGCAGTTGCAGGTACCCTCGAG.....................................................................................................................................................................ACACATGCTGGTGATATTGCTGACTTCATCCACAAAGAGATCAGGTTGCCACCAGTGTTGCTTGGACATTCATTTGGGGGGCTAATTGTTCAGTATTACATTGCAAATATTAGAAGAGAAGCAGTAAAAG............................................................................................................................GTTCTGATTCAGAAAAGAAAAGCTTATTCCCCAATCTTTCTGGAGCAGTGCTCGTTTGCTCAGTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0010E18-vqLN4/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E724366" ref_strand="+" ref_description="SGN-E724366 [FC23DF02]">
      <seq>ggtctgtacgttgattcttcccaaatttcctcaatcgagaggagtatcaacaactcgtgctgtgttaaagagggatcccaaaatgaaggttccttatgaactgaagcaggaacaatctcgtctttttcacaagcttccctctggtctaaacatggaggttctctaccagaggggcagtgaccagataaaatctactaaaaacccacctttagtttttgttcatggaagctttcatgctgcttggtgctgggctgaacactggctccccttcttctcccaaaatggatatgattcttatgctctcagcttgttgggacagggagaaagtgattcacctgctgctgcagttgcaggtaccctcgagtagacacatgctggtgatattgctgacttcatccacaaagagatcaggttgccaccagtgttgcttggacattcatttggggggctaattgttcagtattacattgcaaatat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0010E18-vqLN4/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02SLe0010E18.1" temp_strand="+" temp_description="C02SLe0010E18.1  AC215443.1 htgs_phase:3 submitted_to_sgn_as:C02SLe0010E18 sequenced_by:kribb upload_account_name:korea">
        <position start="34092" stop="35679"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="34392" g_stop="34710" g_length="319"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="319" r_length="319" r_score="0.997"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="34711" i_stop="35059" i_length="349">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="35060" g_stop="35104" g_length="45"/>
          <reference_exon_boundary r_type="cDNA" r_start="320" r_stop="364" r_length="45" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="35105" i_stop="35266" i_length="162">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.955" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="35267" g_stop="35379" g_length="113"/>
          <reference_exon_boundary r_type="cDNA" r_start="365" r_stop="477" r_length="113" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLe0010E18.1" gen_strand="+" ref_id="SGN-E724366" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>477</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0010E18.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E724366" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="34392" e_stop="34710"/>
          <exon e_start="35060" e_stop="35104"/>
          <exon e_start="35267" e_stop="35379"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGTCTGTACGTTGATTCTTCCCAAATTTCCTCAATCGAGAGGAGTATCAACAACTCGTGCTGTGTTAAAGAGGGATCCCAAAATGAAGGTTCCTTATGAACTGAAGCAGGAACAATCTCGTCTTTTTCACAAGCTTCCCTCTGGTCTAAACATGGAGGTTCTCTACCAGAGGGGCAGTGACCAGATAAGATCTACTAAAAACCCACCTTTAGTTTTTGTTCATGGAAGCTTTCATGCTGCTTGGTGCTGGGCTGAACACTGGCTCCCCTTCTTCTCCCAAAATGGATATGATTCTTATGCTCTCAGCTTGTTGGGACAGGTACTCTACACTGCAATTACATGAATAAAAGTATGTAAAATACTGCTTAATTTCTTTTCGGTATCCAGATAATGCTTAATTCAGTACTGATGATCGATTAGCCGACTGAACTAATTTGCAGTTTGATTTATGTTCGACTAAATGTTTACCTTAGAAAAGACCTGATAATGTTGGAAGAATTGTAATCTCAGATAAATATTCAGCTTTTGTTTACTTGATCAAATAGATTCCACTAGTTACTTCGCCAAGATATTTCATTTATCATTTAAATGGTGAAATAGCAATGCAACCCTATCGAAGTAGCAAAGGTACGTTATTAATGTATATGTACCCTTTTTGACATTGCCAGGGAGAAAGTGATTCACCTGCTGCTGCAGTTGCAGGTACCCTCGAGGTATTTTACATTTCTTTCTGTTAGATTCTTGTTGGTTGTCAATCAGGAAGTTGCTTGAGTAATAACATTTACGCTGAGCTGACATTTCTCATTCAGGTTTCTCTTAGTGCATTGCTGAAACGGTTTTCAGTTCCTTCTAATTCTGTACTTTGCTGCATTCAGTAGACACATGCTGGTGATATTGCTGACTTCATCCACAAAGAGATCAGGTTGCCACCAGTGTTGCTTGGACATTCATTTGGGGGGCTAATTGTTCAGTATTACATTGCAAATAT</genome_strand>
        <mrna_strand>GGTCTGTACGTTGATTCTTCCCAAATTTCCTCAATCGAGAGGAGTATCAACAACTCGTGCTGTGTTAAAGAGGGATCCCAAAATGAAGGTTCCTTATGAACTGAAGCAGGAACAATCTCGTCTTTTTCACAAGCTTCCCTCTGGTCTAAACATGGAGGTTCTCTACCAGAGGGGCAGTGACCAGATAAAATCTACTAAAAACCCACCTTTAGTTTTTGTTCATGGAAGCTTTCATGCTGCTTGGTGCTGGGCTGAACACTGGCTCCCCTTCTTCTCCCAAAATGGATATGATTCTTATGCTCTCAGCTTGTTGGGACAG.............................................................................................................................................................................................................................................................................................................................................................GGAGAAAGTGATTCACCTGCTGCTGCAGTTGCAGGTACCCTCGAG..................................................................................................................................................................TAGACACATGCTGGTGATATTGCTGACTTCATCCACAAAGAGATCAGGTTGCCACCAGTGTTGCTTGGACATTCATTTGGGGGGCTAATTGTTCAGTATTACATTGCAAATAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0010E18-vqLN4/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E248006" ref_strand="+" ref_description="SGN-E248006 [cLEF-47-C22]">
      <seq>aaaacccacctttagtttttgttcatggaagctttcatgctgcttggtgctgggctgaacactggctccccttcttctcccaaaatggatatgattcttatgctctcagcttgttgggacagggagaaagtgattcacctgctgctgcagttgcaggtaccctcgagacacatgctggtgatattgctgacttcatccacaaagagatcaggttgccaccagtgttgcttggacattcatttggggggctaattgttcagtattacattgcaaatattagaagagaagcagtaaaaggttctgattcagaaaagaaaagcttattccccaatctttctggagcagtgctcgtttgctcagtacccccttccggtaatagtggtttagtatggcgatatctcttctccaagcctcttgctgctttcaaggtaactcggagcctggcagccaaagcgtttcaaacatctttaccgctttgtaaagaaacatttttc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0010E18-vqLN4/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02SLe0010E18.1" temp_strand="+" temp_description="C02SLe0010E18.1  AC215443.1 htgs_phase:3 submitted_to_sgn_as:C02SLe0010E18 sequenced_by:kribb upload_account_name:korea">
        <position start="34289" stop="36343"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="34589" g_stop="34710" g_length="122"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="122" r_length="122" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="34711" i_stop="35059" i_length="349">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="35060" g_stop="35104" g_length="45"/>
          <reference_exon_boundary r_type="cDNA" r_start="123" r_stop="167" r_length="45" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="35105" i_stop="35269" i_length="165">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.926" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="35270" g_stop="35399" g_length="130"/>
          <reference_exon_boundary r_type="cDNA" r_start="168" r_stop="297" r_length="130" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="35400" i_stop="35523" i_length="124">
            <donor d_prob="0.000" d_score="1.00"/>
            <acceptor a_prob="0.958" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="35524" g_stop="35605" g_length="82"/>
          <reference_exon_boundary r_type="cDNA" r_start="298" r_stop="379" r_length="82" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="35606" i_stop="35688" i_length="83">
            <donor d_prob="0.865" d_score="1.00"/>
            <acceptor a_prob="0.989" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="35689" g_stop="35737" g_length="49"/>
          <reference_exon_boundary r_type="cDNA" r_start="380" r_stop="428" r_length="49" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="35738" i_stop="35977" i_length="240">
            <donor d_prob="0.979" d_score="1.00"/>
            <acceptor a_prob="0.815" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="35978" g_stop="36043" g_length="66"/>
          <reference_exon_boundary r_type="cDNA" r_start="429" r_stop="494" r_length="66" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLe0010E18.1" gen_strand="+" ref_id="SGN-E248006" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>494</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0010E18.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E248006" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="34589" e_stop="34710"/>
          <exon e_start="35060" e_stop="35104"/>
          <exon e_start="35270" e_stop="35399"/>
          <exon e_start="35524" e_stop="35605"/>
          <exon e_start="35689" e_stop="35737"/>
          <exon e_start="35978" e_stop="36043"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAACCCACCTTTAGTTTTTGTTCATGGAAGCTTTCATGCTGCTTGGTGCTGGGCTGAACACTGGCTCCCCTTCTTCTCCCAAAATGGATATGATTCTTATGCTCTCAGCTTGTTGGGACAGGTACTCTACACTGCAATTACATGAATAAAAGTATGTAAAATACTGCTTAATTTCTTTTCGGTATCCAGATAATGCTTAATTCAGTACTGATGATCGATTAGCCGACTGAACTAATTTGCAGTTTGATTTATGTTCGACTAAATGTTTACCTTAGAAAAGACCTGATAATGTTGGAAGAATTGTAATCTCAGATAAATATTCAGCTTTTGTTTACTTGATCAAATAGATTCCACTAGTTACTTCGCCAAGATATTTCATTTATCATTTAAATGGTGAAATAGCAATGCAACCCTATCGAAGTAGCAAAGGTACGTTATTAATGTATATGTACCCTTTTTGACATTGCCAGGGAGAAAGTGATTCACCTGCTGCTGCAGTTGCAGGTACCCTCGAGGTATTTTACATTTCTTTCTGTTAGATTCTTGTTGGTTGTCAATCAGGAAGTTGCTTGAGTAATAACATTTACGCTGAGCTGACATTTCTCATTCAGGTTTCTCTTAGTGCATTGCTGAAACGGTTTTCAGTTCCTTCTAATTCTGTACTTTGCTGCATTCAGTAGACACATGCTGGTGATATTGCTGACTTCATCCACAAAGAGATCAGGTTGCCACCAGTGTTGCTTGGACATTCATTTGGGGGGCTAATTGTTCAGTATTACATTGCAAATATTAGAAGAGAAGCAGTAAAAGGTCATCGTGTTTTTGTTATTGTTTGCAAACTAAGGCATACTGCATTTTCTACTCTCAATTCCAAAAGTTCCTCACAGTGGTTACTTCTACTCAATCCATACAGTTTGCTCTTTTGGTGCTACAGGTTCTGATTCAGAAAAGAAAAGCTTATTCCCCAATCTTTCTGGAGCAGTGCTCGTTTGCTCAGTACCCCCTTCCGGTAATAGGTGACTTCCTGTACTGAAAAGGCCTGTCTTCCATACGAACTTTGTTTTCACTCAATAACTTGTTTCCCTTTTATTTTATTCAGTGGTTTAGTATGGCGATATCTCTTCTCCAAGCCTCTTGCTGCTTTCAAGGTTTGTCTATTTAGTTTAAAGAAACCATATACACACTTATCTCAGATACAGACTGGTATTTACTAGGCATACATATGTACATAGTGAAGCCACTTGGACCCATTCTTCCTGTTTCGATTTTTCGGTGAATACTATCGATGATTAAAAAAGTGAGTGAAACGTCATCTGTTTACTTTTTGCCCCGTTTGCACATCCTCGTTTTTTTTCTTTTCAAAATGGTGAATTTGATATTTCGAGCAGGTAACTCGGAGCCTGGCAGCCAAAGCGTTTCAAACATCTTTACCGCTTTGTAAAGAAACATTTTTC</genome_strand>
        <mrna_strand>AAAACCCACCTTTAGTTTTTGTTCATGGAAGCTTTCATGCTGCTTGGTGCTGGGCTGAACACTGGCTCCCCTTCTTCTCCCAAAATGGATATGATTCTTATGCTCTCAGCTTGTTGGGACAG.............................................................................................................................................................................................................................................................................................................................................................GGAGAAAGTGATTCACCTGCTGCTGCAGTTGCAGGTACCCTCGAG.....................................................................................................................................................................ACACATGCTGGTGATATTGCTGACTTCATCCACAAAGAGATCAGGTTGCCACCAGTGTTGCTTGGACATTCATTTGGGGGGCTAATTGTTCAGTATTACATTGCAAATATTAGAAGAGAAGCAGTAAAAG............................................................................................................................GTTCTGATTCAGAAAAGAAAAGCTTATTCCCCAATCTTTCTGGAGCAGTGCTCGTTTGCTCAGTACCCCCTTCCGGTAATAG...................................................................................TGGTTTAGTATGGCGATATCTCTTCTCCAAGCCTCTTGCTGCTTTCAAG................................................................................................................................................................................................................................................GTAACTCGGAGCCTGGCAGCCAAAGCGTTTCAAACATCTTTACCGCTTTGTAAAGAAACATTTTTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0010E18-vqLN4/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E311886" ref_strand="+" ref_description="SGN-E311886 [cTOA-15-P22]">
      <seq>aaaacccacctttagctttcgttcatggaagctttcatgctgcttggtgctgggctgaacactggctccccttcttctcccaaaatggatatgattcttatgctctcagcttgttgggacagggagaaagtgattcacctgctgctgcagttgcaggtaccctcgagacacatgctggtgatattgctgacttcatccacaaagag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0010E18-vqLN4/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02SLe0010E18.1" temp_strand="+" temp_description="C02SLe0010E18.1  AC215443.1 htgs_phase:3 submitted_to_sgn_as:C02SLe0010E18 sequenced_by:kribb upload_account_name:korea">
        <position start="34289" stop="35608"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="34589" g_stop="34710" g_length="122"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="122" r_length="122" r_score="0.984"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="34711" i_stop="35059" i_length="349">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="35060" g_stop="35104" g_length="45"/>
          <reference_exon_boundary r_type="cDNA" r_start="123" r_stop="167" r_length="45" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="35105" i_stop="35269" i_length="165">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.926" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="35270" g_stop="35308" g_length="39"/>
          <reference_exon_boundary r_type="cDNA" r_start="168" r_stop="206" r_length="39" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLe0010E18.1" gen_strand="+" ref_id="SGN-E311886" ref_strand="+">
        <total_alignment_score>0.984</total_alignment_score>
        <cumulative_length_of_scored_exons>206</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0010E18.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E311886" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="34589" e_stop="34710"/>
          <exon e_start="35060" e_stop="35104"/>
          <exon e_start="35270" e_stop="35308"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAACCCACCTTTAGTTTTTGTTCATGGAAGCTTTCATGCTGCTTGGTGCTGGGCTGAACACTGGCTCCCCTTCTTCTCCCAAAATGGATATGATTCTTATGCTCTCAGCTTGTTGGGACAGGTACTCTACACTGCAATTACATGAATAAAAGTATGTAAAATACTGCTTAATTTCTTTTCGGTATCCAGATAATGCTTAATTCAGTACTGATGATCGATTAGCCGACTGAACTAATTTGCAGTTTGATTTATGTTCGACTAAATGTTTACCTTAGAAAAGACCTGATAATGTTGGAAGAATTGTAATCTCAGATAAATATTCAGCTTTTGTTTACTTGATCAAATAGATTCCACTAGTTACTTCGCCAAGATATTTCATTTATCATTTAAATGGTGAAATAGCAATGCAACCCTATCGAAGTAGCAAAGGTACGTTATTAATGTATATGTACCCTTTTTGACATTGCCAGGGAGAAAGTGATTCACCTGCTGCTGCAGTTGCAGGTACCCTCGAGGTATTTTACATTTCTTTCTGTTAGATTCTTGTTGGTTGTCAATCAGGAAGTTGCTTGAGTAATAACATTTACGCTGAGCTGACATTTCTCATTCAGGTTTCTCTTAGTGCATTGCTGAAACGGTTTTCAGTTCCTTCTAATTCTGTACTTTGCTGCATTCAGTAGACACATGCTGGTGATATTGCTGACTTCATCCACAAAGAG</genome_strand>
        <mrna_strand>AAAACCCACCTTTAGCTTTCGTTCATGGAAGCTTTCATGCTGCTTGGTGCTGGGCTGAACACTGGCTCCCCTTCTTCTCCCAAAATGGATATGATTCTTATGCTCTCAGCTTGTTGGGACAG.............................................................................................................................................................................................................................................................................................................................................................GGAGAAAGTGATTCACCTGCTGCTGCAGTTGCAGGTACCCTCGAG.....................................................................................................................................................................ACACATGCTGGTGATATTGCTGACTTCATCCACAAAGAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0010E18-vqLN4/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E374219" ref_strand="+" ref_description="SGN-E374219 [TUS-33-J17]">
      <seq>cggagcctggcagccaaagcgtttcaaacatctttaccgctttgtaaagaaacatttttctcagcaggaatggaggatcagctggttgcacgttaccaagagctaatgactgaaagctcaaggatgcctttgtttgatctaagaaagctcaacgcatctcttcctgtatctcgacttgaggatcctgcatttaaagtacttgtagtgggtgcaaaggatgatttcattgtggacatggaaggactcaatgaaacaggaagattttatggcatcccaacagtctgtattgaaggggttgcccatgatataatgatagattgctcatggagaaagggtgcacagctaatcttgtcatggttaaacagcttaaattaagctgggacacaaatatgaaggaaaatagccccgtgttaatgtccggtttttgttggctagttgaaaccactgctttggccttagattcaatcaaagattgagaggttaagataggattgagtttgtactttttttattggttgtggagatctgttggatatagattgatgtcgagaaaccaacaaaacagaaaaagtaggttcagtagcatgaaattttttgttagaagttcataaacaacttcttgatttggctttgatatccatctgctgttgaatcttgtaaattctgaatgaaatgtgaggttttggttccatcagacacaaaaaaaaaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0010E18-vqLN4/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02SLe0010E18.1" temp_strand="+" temp_description="C02SLe0010E18.1  AC215443.1 htgs_phase:3 submitted_to_sgn_as:C02SLe0010E18 sequenced_by:kribb upload_account_name:korea">
        <position start="35684" stop="96589"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="35984" g_stop="36075" g_length="92"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="92" r_length="92" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="36076" i_stop="36696" i_length="621">
            <donor d_prob="0.852" d_score="1.00"/>
            <acceptor a_prob="0.954" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="36697" g_stop="36835" g_length="139"/>
          <reference_exon_boundary r_type="cDNA" r_start="93" r_stop="231" r_length="139" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="36836" i_stop="36961" i_length="126">
            <donor d_prob="0.985" d_score="1.00"/>
            <acceptor a_prob="0.990" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="36962" g_stop="37455" g_length="494"/>
          <reference_exon_boundary r_type="cDNA" r_start="232" r_stop="726" r_length="495" r_score="0.960"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLe0010E18.1" gen_strand="+" ref_id="SGN-E374219" ref_strand="+">
        <total_alignment_score>0.972</total_alignment_score>
        <cumulative_length_of_scored_exons>725</cumulative_length_of_scored_exons>
        <coverage percentage="0.999" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0010E18.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E374219" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="35984" e_stop="36075"/>
          <exon e_start="36697" e_stop="36835"/>
          <exon e_start="36962" e_stop="37455"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CGGAGCCTGGCAGCCAAAGCGTTTCAAACATCTTTACCGCTTTGTAAAGAAACATTTTTCTCAGCAGGAATGGAGGATCAGCTGGTTGCACGGTCAGTCAAATTAGAACTTAGATGGGTTTTTTTTAGAACTTAGATGGTTATTGTTTTAGATATCAGATGAAAGAGTAAATGACTTAATAGACAAAGACCTTCGTAGAACTCATTTCTATGTTCTCCATCACTGGTATTAGGAGGATTTTGAAGATGCCTGTGTACTACTAGATAATCTAAGAGTGGCAAAAGTTGACTTTAAACATGTTACCCACTTGAGTTATTCCTACCACTTCCCAAGTATTAGTAACTTGAACTGAAAGTTTCCTGGTCGAATTGTAAAGATCTGGTAACTGATGCATATACTATTCTAATGTCAGCTTGAGGATTGCTCTTTCCAAAAATCCACTAATGTAAATTTTCCGAGTTACTCAATCTCCAGTTCGGATAGTGGTCATCGAGTTTACGTTAACATTTTGTTCTGTGTAGTTCCTAGATTATGTTTGTAATTTTGTTTGAATATCAAGCTCGAGAGTTATGTTTTATATTAAACAGAATAGATGATCTCGCTATGCATCTTGTTCTAAGCATTATATGTTGGAATTATACCTTGACTAAATCATCTATGTATACACAATGTTGTCTTACGGCAACATTTGCCTTTTCTTTTCTCCTTTTTAGTTACCAAGAGCTAATGACTGAAAGCTCAAGGATGCCTTTGTTTGATCTAAGAAAGCTCAACGCATCTCTTCCTGTATCTCGACTTGAGGATCCTGCATTTAAAGTACTTGTAGTGGGTGCAAAGGATGATTTCATTGTGGTAAGTTCTTGGATAATCTTGGAAAGTATTTGTTAAAGAGATGTTTCAAATTTTGCGCGTTTTGTAAAATCTGGAGCTAAATAGTCCTAGTATTCTGAAAGTAACATATGAATGTGATTCTCTCAGGACATGGAAGGACTCAATGAAACAGGAAGATTTTATGGCATCCCAACAGTCTGTATTGAAGGGGTTGCCCATGATATAATGATAGATTGCTCATGGAGAAAGGGTGCACAGCTAATCTTGTCATGGTTAAACAGCTTAAATTAAGCTGGGACACAAATATGAAGGAAAATAGCCCCGTGTTAATGTCCGGTTTTTGTTGGCTAGTTGAAACCACTGCTTTGGCCTTAGATTCAATCAAAGATTGAGAGGTTAAGATAGGATTGAGTTTGTACTTTTTTTATTGGTTGTGGAGATCTGTTGGATATAGATTGATGTCGAGAAACCAACAAAACAGAAAAAGTAGGTTCAGTAGCATGAAATTTTTTGTTAGAAGTTCATAAACAACTTCTTGATTTGGCTTTGATATCCATCTGCTGTTGAATCTTGTAAATTCTGAATGAAATGTGAGG-TTTGGTTCCATCAGACACACTTACATGGCTTGAGAATAATATTTT</genome_strand>
        <mrna_strand>CGGAGCCTGGCAGCCAAAGCGTTTCAAACATCTTTACCGCTTTGTAAAGAAACATTTTTCTCAGCAGGAATGGAGGATCAGCTGGTTGCACG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTACCAAGAGCTAATGACTGAAAGCTCAAGGATGCCTTTGTTTGATCTAAGAAAGCTCAACGCATCTCTTCCTGTATCTCGACTTGAGGATCCTGCATTTAAAGTACTTGTAGTGGGTGCAAAGGATGATTTCATTGTG..............................................................................................................................GACATGGAAGGACTCAATGAAACAGGAAGATTTTATGGCATCCCAACAGTCTGTATTGAAGGGGTTGCCCATGATATAATGATAGATTGCTCATGGAGAAAGGGTGCACAGCTAATCTTGTCATGGTTAAACAGCTTAAATTAAGCTGGGACACAAATATGAAGGAAAATAGCCCCGTGTTAATGTCCGGTTTTTGTTGGCTAGTTGAAACCACTGCTTTGGCCTTAGATTCAATCAAAGATTGAGAGGTTAAGATAGGATTGAGTTTGTACTTTTTTTATTGGTTGTGGAGATCTGTTGGATATAGATTGATGTCGAGAAACCAACAAAACAGAAAAAGTAGGTTCAGTAGCATGAAATTTTTTGTTAGAAGTTCATAAACAACTTCTTGATTTGGCTTTGATATCCATCTGCTGTTGAATCTTGTAAATTCTGAATGAAATGTGAGGTTTTGGTTCCATCAGACACAAAAAAAAAAAAAAAAAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0010E18-vqLN4/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E305737" ref_strand="+" ref_description="SGN-E305737 [cLEX-14-A22]">
      <seq>cggagcctggcagccaaagcgtttcaaacatctttaccgctttgtaaagaaacatttttctcagcaggaatggaggatcagctggttgcacgttaccaagagctaatgactgaaagctcaaggatgcctttgtttgatctaagaaagctcaacgcatctcttcctgtatctcgacttgaggatcctgcatttaaagtacttgtagtgggtgcaaaggatgatttcattgtggacatggaaggactcaatgaaacaggaagattttatggcatcccaacagtctgtattgaaggggttgcccatgatataatgatagattgctcatggagaaagggtgcacagctaatcttgacatggttaaacagcttaaattaagctgggacacatatatgaaggaaaatagccccgtgttaatgtccggttcttgttggctagttgaaaccactgctttggccttagattcaatcaaagattgagaggttaacataggattgagtttgtacttcttttattggttgtggagatct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0010E18-vqLN4/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02SLe0010E18.1" temp_strand="+" temp_description="C02SLe0010E18.1  AC215443.1 htgs_phase:3 submitted_to_sgn_as:C02SLe0010E18 sequenced_by:kribb upload_account_name:korea">
        <position start="35684" stop="37557"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="35984" g_stop="36075" g_length="92"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="92" r_length="92" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="36076" i_stop="36696" i_length="621">
            <donor d_prob="0.852" d_score="1.00"/>
            <acceptor a_prob="0.954" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="36697" g_stop="36835" g_length="139"/>
          <reference_exon_boundary r_type="cDNA" r_start="93" r_stop="231" r_length="139" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="36836" i_stop="36961" i_length="126">
            <donor d_prob="0.985" d_score="1.00"/>
            <acceptor a_prob="0.990" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="36962" g_stop="37257" g_length="296"/>
          <reference_exon_boundary r_type="cDNA" r_start="232" r_stop="527" r_length="296" r_score="0.983"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLe0010E18.1" gen_strand="+" ref_id="SGN-E305737" ref_strand="+">
        <total_alignment_score>0.991</total_alignment_score>
        <cumulative_length_of_scored_exons>527</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0010E18.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E305737" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="35984" e_stop="36075"/>
          <exon e_start="36697" e_stop="36835"/>
          <exon e_start="36962" e_stop="37257"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CGGAGCCTGGCAGCCAAAGCGTTTCAAACATCTTTACCGCTTTGTAAAGAAACATTTTTCTCAGCAGGAATGGAGGATCAGCTGGTTGCACGGTCAGTCAAATTAGAACTTAGATGGGTTTTTTTTAGAACTTAGATGGTTATTGTTTTAGATATCAGATGAAAGAGTAAATGACTTAATAGACAAAGACCTTCGTAGAACTCATTTCTATGTTCTCCATCACTGGTATTAGGAGGATTTTGAAGATGCCTGTGTACTACTAGATAATCTAAGAGTGGCAAAAGTTGACTTTAAACATGTTACCCACTTGAGTTATTCCTACCACTTCCCAAGTATTAGTAACTTGAACTGAAAGTTTCCTGGTCGAATTGTAAAGATCTGGTAACTGATGCATATACTATTCTAATGTCAGCTTGAGGATTGCTCTTTCCAAAAATCCACTAATGTAAATTTTCCGAGTTACTCAATCTCCAGTTCGGATAGTGGTCATCGAGTTTACGTTAACATTTTGTTCTGTGTAGTTCCTAGATTATGTTTGTAATTTTGTTTGAATATCAAGCTCGAGAGTTATGTTTTATATTAAACAGAATAGATGATCTCGCTATGCATCTTGTTCTAAGCATTATATGTTGGAATTATACCTTGACTAAATCATCTATGTATACACAATGTTGTCTTACGGCAACATTTGCCTTTTCTTTTCTCCTTTTTAGTTACCAAGAGCTAATGACTGAAAGCTCAAGGATGCCTTTGTTTGATCTAAGAAAGCTCAACGCATCTCTTCCTGTATCTCGACTTGAGGATCCTGCATTTAAAGTACTTGTAGTGGGTGCAAAGGATGATTTCATTGTGGTAAGTTCTTGGATAATCTTGGAAAGTATTTGTTAAAGAGATGTTTCAAATTTTGCGCGTTTTGTAAAATCTGGAGCTAAATAGTCCTAGTATTCTGAAAGTAACATATGAATGTGATTCTCTCAGGACATGGAAGGACTCAATGAAACAGGAAGATTTTATGGCATCCCAACAGTCTGTATTGAAGGGGTTGCCCATGATATAATGATAGATTGCTCATGGAGAAAGGGTGCACAGCTAATCTTGTCATGGTTAAACAGCTTAAATTAAGCTGGGACACAAATATGAAGGAAAATAGCCCCGTGTTAATGTCCGGTTTTTGTTGGCTAGTTGAAACCACTGCTTTGGCCTTAGATTCAATCAAAGATTGAGAGGTTAAGATAGGATTGAGTTTGTACTTTTTTTATTGGTTGTGGAGATCT</genome_strand>
        <mrna_strand>CGGAGCCTGGCAGCCAAAGCGTTTCAAACATCTTTACCGCTTTGTAAAGAAACATTTTTCTCAGCAGGAATGGAGGATCAGCTGGTTGCACG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTACCAAGAGCTAATGACTGAAAGCTCAAGGATGCCTTTGTTTGATCTAAGAAAGCTCAACGCATCTCTTCCTGTATCTCGACTTGAGGATCCTGCATTTAAAGTACTTGTAGTGGGTGCAAAGGATGATTTCATTGTG..............................................................................................................................GACATGGAAGGACTCAATGAAACAGGAAGATTTTATGGCATCCCAACAGTCTGTATTGAAGGGGTTGCCCATGATATAATGATAGATTGCTCATGGAGAAAGGGTGCACAGCTAATCTTGACATGGTTAAACAGCTTAAATTAAGCTGGGACACATATATGAAGGAAAATAGCCCCGTGTTAATGTCCGGTTCTTGTTGGCTAGTTGAAACCACTGCTTTGGCCTTAGATTCAATCAAAGATTGAGAGGTTAACATAGGATTGAGTTTGTACTTCTTTTATTGGTTGTGGAGATCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0010E18-vqLN4/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E374218" ref_strand="+" ref_description="SGN-E374218 [TUS-33-J17](-)">
      <seq>gtttcaaacatctttaccgctttgtaaagaaacatttttctcagcaggaatggaggatcagctggttgcacgttaccaagagctaatgactgaaagctcaaggatgcctttgtttgatctaagaaagctcaacgcatctcttcctgtatctcgacttgaggatcctgcatttaaagtacttgtagtgggtgcaaaggatgatttcattgtggacatggaaggactcaatgaaacaggaagattttatggcatcccaacagtctgtattgaaggggttgcccatgatataatgatagattgctcatggagaaagggtgcacagctaatcttgtcatggttaaacagcttaaattaagctgggacacaaatatgaaggaaaatagccccgtgttaatgtccggtttttgttggctagttgaaaccactgctttggccttagattcaatcaaagattgagaggttaagataggattgagtttgtactttttttattggttgtggagatctgttggatatagattgatgtcgagaaaccaacaaaacagaaaaagtaggttcagtagcatgaaattttttgttagaagttcataaacaacttcttgatttggctttgatatccatctgctgttgaatcttgtaaattttgaatgaaatgtgaggtttggttccatcagacccaaaaaaaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0010E18-vqLN4/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02SLe0010E18.1" temp_strand="+" temp_description="C02SLe0010E18.1  AC215443.1 htgs_phase:3 submitted_to_sgn_as:C02SLe0010E18 sequenced_by:kribb upload_account_name:korea">
        <position start="35704" stop="96589"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="36004" g_stop="36075" g_length="72"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="72" r_length="72" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="36076" i_stop="36696" i_length="621">
            <donor d_prob="0.852" d_score="1.00"/>
            <acceptor a_prob="0.954" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="36697" g_stop="36835" g_length="139"/>
          <reference_exon_boundary r_type="cDNA" r_start="73" r_stop="211" r_length="139" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="36836" i_stop="36961" i_length="126">
            <donor d_prob="0.985" d_score="1.00"/>
            <acceptor a_prob="0.990" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="36962" g_stop="37453" g_length="492"/>
          <reference_exon_boundary r_type="cDNA" r_start="212" r_stop="703" r_length="492" r_score="0.963"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLe0010E18.1" gen_strand="+" ref_id="SGN-E374218" ref_strand="+">
        <total_alignment_score>0.974</total_alignment_score>
        <cumulative_length_of_scored_exons>703</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0010E18.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E374218" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="36004" e_stop="36075"/>
          <exon e_start="36697" e_stop="36835"/>
          <exon e_start="36962" e_stop="37453"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTTTCAAACATCTTTACCGCTTTGTAAAGAAACATTTTTCTCAGCAGGAATGGAGGATCAGCTGGTTGCACGGTCAGTCAAATTAGAACTTAGATGGGTTTTTTTTAGAACTTAGATGGTTATTGTTTTAGATATCAGATGAAAGAGTAAATGACTTAATAGACAAAGACCTTCGTAGAACTCATTTCTATGTTCTCCATCACTGGTATTAGGAGGATTTTGAAGATGCCTGTGTACTACTAGATAATCTAAGAGTGGCAAAAGTTGACTTTAAACATGTTACCCACTTGAGTTATTCCTACCACTTCCCAAGTATTAGTAACTTGAACTGAAAGTTTCCTGGTCGAATTGTAAAGATCTGGTAACTGATGCATATACTATTCTAATGTCAGCTTGAGGATTGCTCTTTCCAAAAATCCACTAATGTAAATTTTCCGAGTTACTCAATCTCCAGTTCGGATAGTGGTCATCGAGTTTACGTTAACATTTTGTTCTGTGTAGTTCCTAGATTATGTTTGTAATTTTGTTTGAATATCAAGCTCGAGAGTTATGTTTTATATTAAACAGAATAGATGATCTCGCTATGCATCTTGTTCTAAGCATTATATGTTGGAATTATACCTTGACTAAATCATCTATGTATACACAATGTTGTCTTACGGCAACATTTGCCTTTTCTTTTCTCCTTTTTAGTTACCAAGAGCTAATGACTGAAAGCTCAAGGATGCCTTTGTTTGATCTAAGAAAGCTCAACGCATCTCTTCCTGTATCTCGACTTGAGGATCCTGCATTTAAAGTACTTGTAGTGGGTGCAAAGGATGATTTCATTGTGGTAAGTTCTTGGATAATCTTGGAAAGTATTTGTTAAAGAGATGTTTCAAATTTTGCGCGTTTTGTAAAATCTGGAGCTAAATAGTCCTAGTATTCTGAAAGTAACATATGAATGTGATTCTCTCAGGACATGGAAGGACTCAATGAAACAGGAAGATTTTATGGCATCCCAACAGTCTGTATTGAAGGGGTTGCCCATGATATAATGATAGATTGCTCATGGAGAAAGGGTGCACAGCTAATCTTGTCATGGTTAAACAGCTTAAATTAAGCTGGGACACAAATATGAAGGAAAATAGCCCCGTGTTAATGTCCGGTTTTTGTTGGCTAGTTGAAACCACTGCTTTGGCCTTAGATTCAATCAAAGATTGAGAGGTTAAGATAGGATTGAGTTTGTACTTTTTTTATTGGTTGTGGAGATCTGTTGGATATAGATTGATGTCGAGAAACCAACAAAACAGAAAAAGTAGGTTCAGTAGCATGAAATTTTTTGTTAGAAGTTCATAAACAACTTCTTGATTTGGCTTTGATATCCATCTGCTGTTGAATCTTGTAAATTCTGAATGAAATGTGAGGTTTGGTTCCATCAGACACACTTACATGGCTTGAGAATAATATT</genome_strand>
        <mrna_strand>GTTTCAAACATCTTTACCGCTTTGTAAAGAAACATTTTTCTCAGCAGGAATGGAGGATCAGCTGGTTGCACG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTACCAAGAGCTAATGACTGAAAGCTCAAGGATGCCTTTGTTTGATCTAAGAAAGCTCAACGCATCTCTTCCTGTATCTCGACTTGAGGATCCTGCATTTAAAGTACTTGTAGTGGGTGCAAAGGATGATTTCATTGTG..............................................................................................................................GACATGGAAGGACTCAATGAAACAGGAAGATTTTATGGCATCCCAACAGTCTGTATTGAAGGGGTTGCCCATGATATAATGATAGATTGCTCATGGAGAAAGGGTGCACAGCTAATCTTGTCATGGTTAAACAGCTTAAATTAAGCTGGGACACAAATATGAAGGAAAATAGCCCCGTGTTAATGTCCGGTTTTTGTTGGCTAGTTGAAACCACTGCTTTGGCCTTAGATTCAATCAAAGATTGAGAGGTTAAGATAGGATTGAGTTTGTACTTTTTTTATTGGTTGTGGAGATCTGTTGGATATAGATTGATGTCGAGAAACCAACAAAACAGAAAAAGTAGGTTCAGTAGCATGAAATTTTTTGTTAGAAGTTCATAAACAACTTCTTGATTTGGCTTTGATATCCATCTGCTGTTGAATCTTGTAAATTTTGAATGAAATGTGAGGTTTGGTTCCATCAGACCCAAAAAAAAAAAAAAAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0010E18-vqLN4/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E312039" ref_strand="+" ref_description="SGN-E312039 [cTOA-11-E3]">
      <seq>tcagttttctctctctctcccatcgtcacttgctttgtccaaatccccaacttcccctcctcctcacaacactttgccccttcaaaaactaaccccccaatggaaactattcaattctcttcaacttcaacttctttgtttatttcaacttctttctttttctctcgggtctctcaacaacaatggagatggaggaaggttttaaggggttactcaggttaattggttctgttaagaattacgattggggccgtacggcgaaggagtcttgtgttggacgtctgtataggctcaattctcggacgaaaattgatgaaaaacagccatatgccgagttttggatgggaactcatgactctggaccatcctacattgtggtggaacgaggaggaagaattcagaatggacatgctaatggcggaggaattagagacaagtgttctttgaaagattggattcagaagaaccctagtgtacttggagaaactgttcttgccaaatggggtacccagcttccttttctcttcaaggtactctcaattgagaaagctttgtctatacaagctcat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0010E18-vqLN4/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02SLe0010E18.1" temp_strand="-" temp_description="C02SLe0010E18.1  AC215443.1 htgs_phase:3 submitted_to_sgn_as:C02SLe0010E18 sequenced_by:kribb upload_account_name:korea">
        <position start="42319" stop="41028"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="42019" g_stop="41490" g_length="530"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="530" r_length="530" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="41489" i_stop="41367" i_length="123">
            <donor d_prob="0.944" d_score="1.00"/>
            <acceptor a_prob="0.930" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="41366" g_stop="41328" g_length="39"/>
          <reference_exon_boundary r_type="cDNA" r_start="531" r_stop="569" r_length="39" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLe0010E18.1" gen_strand="-" ref_id="SGN-E312039" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>569</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0010E18.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E312039" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="42019" e_stop="41490"/>
          <exon e_start="41366" e_stop="41328"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCAGTTTTCTCTCTCTCTCCCATCGTCACTTGCTTTGTCCAAATCCCCAACTTCCCCTCCTCCTCACAACACTTTGCCCCTTCAAAAACTAACCCCCCAATGGAAACTATTCAATTCTCTTCAACTTCAACTTCTTTGTTTATTTCAACTTCTTTCTTTTTCTCTCGGGTCTCTCAACAACAATGGAGATGGAGGAAGGTTTTAAGGGGTTACTCAGGTTAATTGGTTCTGTTAAGAATTACGATTGGGGCCGTACGGCGAAGGAGTCTTGTGTTGGACGTCTGTATAGGCTCAATTCTCGGACGAAAATTGATGAAAAACAGCCATATGCCGAGTTTTGGATGGGAACTCATGACTCTGGACCATCCTACATTGTGGTGGAACGAGGAGGAAGAATTCAGAATGGACATGCTAATGGCGGAGGAATTAGAGACAAGTGTTCTTTGAAAGATTGGATTCAGAAGAACCCTAGTGTACTTGGAGAAACTGTTCTTGCCAAATGGGGTACCCAGCTTCCTTTTCTCTTCAAGGTGGTTTCCTCTCTTCATTGCTTTTTATTTGCCCATACTGGGTTGTCGGCAGATTGTGATTTCTCATATTTAGACTGTATAAGGAACCAGGTTCCCTGATCAATTACAGGCTTTCTGTTATAGGTACTCTCAATTGAGAAAGCTTTGTCTATACAAGCTCAT</genome_strand>
        <mrna_strand>TCAGTTTTCTCTCTCTCTCCCATCGTCACTTGCTTTGTCCAAATCCCCAACTTCCCCTCCTCCTCACAACACTTTGCCCCTTCAAAAACTAACCCCCCAATGGAAACTATTCAATTCTCTTCAACTTCAACTTCTTTGTTTATTTCAACTTCTTTCTTTTTCTCTCGGGTCTCTCAACAACAATGGAGATGGAGGAAGGTTTTAAGGGGTTACTCAGGTTAATTGGTTCTGTTAAGAATTACGATTGGGGCCGTACGGCGAAGGAGTCTTGTGTTGGACGTCTGTATAGGCTCAATTCTCGGACGAAAATTGATGAAAAACAGCCATATGCCGAGTTTTGGATGGGAACTCATGACTCTGGACCATCCTACATTGTGGTGGAACGAGGAGGAAGAATTCAGAATGGACATGCTAATGGCGGAGGAATTAGAGACAAGTGTTCTTTGAAAGATTGGATTCAGAAGAACCCTAGTGTACTTGGAGAAACTGTTCTTGCCAAATGGGGTACCCAGCTTCCTTTTCTCTTCAAG...........................................................................................................................GTACTCTCAATTGAGAAAGCTTTGTCTATACAAGCTCAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0010E18-vqLN4/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E245001" ref_strand="+" ref_description="SGN-E245001 [cLEF-2-D24]">
      <seq>tttctctctctctcccatcgtcacttgctttgtccaaatccccaacttcccctcctcctcacaacactttgccccttcaaaaactaaccccccaatggaaactattcaattctcttcaacttcaacttctttgtttatttcaacttctttctttttctctcgggtctctcaacaacaatggagatggaggaaggttttaaggggttactcaggttaattggttctgttaagaattacgattggggccgtacggcgaaggagtcttgtgttggacgtctgtataggctcaattctcggacgaaaattgatgaaaaacagccatatgccgagttttggatgggaactcatgactctggaccatcctacattgtggtggaacgaggaggaagaattcagaatggacatgctaatggcggaggaattagagacaagtgttctttgaaagattggattcagaagaaccctagtgtacttggagaaactgttcttgccaaatggggtacccaacttccttttctct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0010E18-vqLN4/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02SLe0010E18.1" temp_strand="-" temp_description="C02SLe0010E18.1  AC215443.1 htgs_phase:3 submitted_to_sgn_as:C02SLe0010E18 sequenced_by:kribb upload_account_name:korea">
        <position start="42314" stop="41195"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="42014" g_stop="41495" g_length="520"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="520" r_length="520" r_score="0.998"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLe0010E18.1" gen_strand="-" ref_id="SGN-E245001" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>520</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0010E18.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E245001" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="42014" e_stop="41495"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTCTCTCTCTCTCCCATCGTCACTTGCTTTGTCCAAATCCCCAACTTCCCCTCCTCCTCACAACACTTTGCCCCTTCAAAAACTAACCCCCCAATGGAAACTATTCAATTCTCTTCAACTTCAACTTCTTTGTTTATTTCAACTTCTTTCTTTTTCTCTCGGGTCTCTCAACAACAATGGAGATGGAGGAAGGTTTTAAGGGGTTACTCAGGTTAATTGGTTCTGTTAAGAATTACGATTGGGGCCGTACGGCGAAGGAGTCTTGTGTTGGACGTCTGTATAGGCTCAATTCTCGGACGAAAATTGATGAAAAACAGCCATATGCCGAGTTTTGGATGGGAACTCATGACTCTGGACCATCCTACATTGTGGTGGAACGAGGAGGAAGAATTCAGAATGGACATGCTAATGGCGGAGGAATTAGAGACAAGTGTTCTTTGAAAGATTGGATTCAGAAGAACCCTAGTGTACTTGGAGAAACTGTTCTTGCCAAATGGGGTACCCAGCTTCCTTTTCTCT</genome_strand>
        <mrna_strand>TTTCTCTCTCTCTCCCATCGTCACTTGCTTTGTCCAAATCCCCAACTTCCCCTCCTCCTCACAACACTTTGCCCCTTCAAAAACTAACCCCCCAATGGAAACTATTCAATTCTCTTCAACTTCAACTTCTTTGTTTATTTCAACTTCTTTCTTTTTCTCTCGGGTCTCTCAACAACAATGGAGATGGAGGAAGGTTTTAAGGGGTTACTCAGGTTAATTGGTTCTGTTAAGAATTACGATTGGGGCCGTACGGCGAAGGAGTCTTGTGTTGGACGTCTGTATAGGCTCAATTCTCGGACGAAAATTGATGAAAAACAGCCATATGCCGAGTTTTGGATGGGAACTCATGACTCTGGACCATCCTACATTGTGGTGGAACGAGGAGGAAGAATTCAGAATGGACATGCTAATGGCGGAGGAATTAGAGACAAGTGTTCTTTGAAAGATTGGATTCAGAAGAACCCTAGTGTACTTGGAGAAACTGTTCTTGCCAAATGGGGTACCCAACTTCCTTTTCTCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0010E18-vqLN4/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E202218" ref_strand="+" ref_description="SGN-E202218 [cLEC-7-L2]">
      <seq>gcctcatcagttttctctctctctcccatcgacacttgctttgtccaaatccccaacttcccctcctcctcacaacactttgccccttcaaaaactaaccccccaatggaaactattcaattctcttcaacttcaacttctttgtttatttcaacttctttctttttctctcgggtctctcaacaacaatggagatggaggaaggttttaaggggttactcaggttaattggttctgttaagaattacgattggggccgtacggcgaacgagtcttgcgttggacgtctgtataggctcaattctcggacgaaaattgatgaaaaacagccatatgccgagttttggatgggaactcatgactctggaccatcctacattgtggtggaacgaggaggaagaattcanaatggacatgctaatggc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0010E18-vqLN4/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02SLe0010E18.1" temp_strand="-" temp_description="C02SLe0010E18.1  AC215443.1 htgs_phase:3 submitted_to_sgn_as:C02SLe0010E18 sequenced_by:kribb upload_account_name:korea">
        <position start="42325" stop="41301"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="42025" g_stop="41601" g_length="425"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="425" r_length="425" r_score="0.991"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLe0010E18.1" gen_strand="-" ref_id="SGN-E202218" ref_strand="+">
        <total_alignment_score>0.991</total_alignment_score>
        <cumulative_length_of_scored_exons>425</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0010E18.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E202218" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="42025" e_stop="41601"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCCTCATCAGTTTTCTCTCTCTCTCCCATCGTCACTTGCTTTGTCCAAATCCCCAACTTCCCCTCCTCCTCACAACACTTTGCCCCTTCAAAAACTAACCCCCCAATGGAAACTATTCAATTCTCTTCAACTTCAACTTCTTTGTTTATTTCAACTTCTTTCTTTTTCTCTCGGGTCTCTCAACAACAATGGAGATGGAGGAAGGTTTTAAGGGGTTACTCAGGTTAATTGGTTCTGTTAAGAATTACGATTGGGGCCGTACGGCGAAGGAGTCTTGTGTTGGACGTCTGTATAGGCTCAATTCTCGGACGAAAATTGATGAAAAACAGCCATATGCCGAGTTTTGGATGGGAACTCATGACTCTGGACCATCCTACATTGTGGTGGAACGAGGAGGAAGAATTCAGAATGGACATGCTAATGGC</genome_strand>
        <mrna_strand>GCCTCATCAGTTTTCTCTCTCTCTCCCATCGACACTTGCTTTGTCCAAATCCCCAACTTCCCCTCCTCCTCACAACACTTTGCCCCTTCAAAAACTAACCCCCCAATGGAAACTATTCAATTCTCTTCAACTTCAACTTCTTTGTTTATTTCAACTTCTTTCTTTTTCTCTCGGGTCTCTCAACAACAATGGAGATGGAGGAAGGTTTTAAGGGGTTACTCAGGTTAATTGGTTCTGTTAAGAATTACGATTGGGGCCGTACGGCGAACGAGTCTTGCGTTGGACGTCTGTATAGGCTCAATTCTCGGACGAAAATTGATGAAAAACAGCCATATGCCGAGTTTTGGATGGGAACTCATGACTCTGGACCATCCTACATTGTGGTGGAACGAGGAGGAAGAATTCANAATGGACATGCTAATGGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0010E18-vqLN4/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E313557" ref_strand="+" ref_description="SGN-E313557 [cTOA-12-B9]">
      <seq>aaatcccccacttcccctcctcctcacaacactttgccccttcaaaaactaaccccccaatggaaactattcaattctcttcaacttcaacttctttgattatttcaacttctttctttttctctcgggtctctcaacaacaatggagatggaggaaggttttaaggggttactcaggttaattggttctgttaagaattacgattggggccgtacggcgaacgagtcttgagttggacgtgtgtataggctcaattctcggacgagaattgatgaaaaacagccatatgccgagttttggatgggaactcatgagtctggaccatcctacattgcggtggaacgaggaggaagaatgcacaatggacatgctaatg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0010E18-vqLN4/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02SLe0010E18.1" temp_strand="-" temp_description="C02SLe0010E18.1  AC215443.1 htgs_phase:3 submitted_to_sgn_as:C02SLe0010E18 sequenced_by:kribb upload_account_name:korea">
        <position start="42279" stop="41303"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="41979" g_stop="41603" g_length="377"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="377" r_length="377" r_score="0.973"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLe0010E18.1" gen_strand="-" ref_id="SGN-E313557" ref_strand="+">
        <total_alignment_score>0.973</total_alignment_score>
        <cumulative_length_of_scored_exons>377</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0010E18.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E313557" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="41979" e_stop="41603"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAATCCCCAACTTCCCCTCCTCCTCACAACACTTTGCCCCTTCAAAAACTAACCCCCCAATGGAAACTATTCAATTCTCTTCAACTTCAACTTCTTTGTTTATTTCAACTTCTTTCTTTTTCTCTCGGGTCTCTCAACAACAATGGAGATGGAGGAAGGTTTTAAGGGGTTACTCAGGTTAATTGGTTCTGTTAAGAATTACGATTGGGGCCGTACGGCGAAGGAGTCTTGTGTTGGACGTCTGTATAGGCTCAATTCTCGGACGAAAATTGATGAAAAACAGCCATATGCCGAGTTTTGGATGGGAACTCATGACTCTGGACCATCCTACATTGTGGTGGAACGAGGAGGAAGAATTCAGAATGGACATGCTAATG</genome_strand>
        <mrna_strand>AAATCCCCCACTTCCCCTCCTCCTCACAACACTTTGCCCCTTCAAAAACTAACCCCCCAATGGAAACTATTCAATTCTCTTCAACTTCAACTTCTTTGATTATTTCAACTTCTTTCTTTTTCTCTCGGGTCTCTCAACAACAATGGAGATGGAGGAAGGTTTTAAGGGGTTACTCAGGTTAATTGGTTCTGTTAAGAATTACGATTGGGGCCGTACGGCGAACGAGTCTTGAGTTGGACGTGTGTATAGGCTCAATTCTCGGACGAGAATTGATGAAAAACAGCCATATGCCGAGTTTTGGATGGGAACTCATGAGTCTGGACCATCCTACATTGCGGTGGAACGAGGAGGAAGAATGCACAATGGACATGCTAATG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0010E18-vqLN4/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E298121" ref_strand="+" ref_description="SGN-E298121 [cLEW-9-C15]">
      <seq>ggaattcgcatttctctgtgttcaacaatggccgaaacaatttgtagagctctacgtgatggagcattcgaaggagaacacgctcctgctctaactataaaggatactatcgacgcgcctctcggttccttcgtcttcaaccatattcttacgcaacttacttctaacattcttgccggtaaatcacaagctcgaggtgttgtgctggtcgctttatcacggcctccatcgttctatgttgaactgttgaagaataaaggtttcgacgtttcttcatcgagtaaatggctaagagttttagattgctattctgatcctcttggatggaaaaacaagttattgga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0010E18-vqLN4/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02SLe0010E18.1" temp_strand="+" temp_description="C02SLe0010E18.1  AC215443.1 htgs_phase:3 submitted_to_sgn_as:C02SLe0010E18 sequenced_by:kribb upload_account_name:korea">
        <position start="49368" stop="50494"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="49668" g_stop="49861" g_length="194"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="194" r_length="194" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="49862" i_stop="49952" i_length="91">
            <donor d_prob="0.962" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="49953" g_stop="50045" g_length="93"/>
          <reference_exon_boundary r_type="cDNA" r_start="195" r_stop="287" r_length="93" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="50046" i_stop="50137" i_length="92">
            <donor d_prob="0.778" d_score="1.00"/>
            <acceptor a_prob="0.763" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="50138" g_stop="50194" g_length="57"/>
          <reference_exon_boundary r_type="cDNA" r_start="288" r_stop="344" r_length="57" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLe0010E18.1" gen_strand="+" ref_id="SGN-E298121" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>344</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0010E18.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E298121" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="49668" e_stop="49861"/>
          <exon e_start="49953" e_stop="50045"/>
          <exon e_start="50138" e_stop="50194"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGAATTCGCATTTCTCTGTGTTCAACAATGGCCGAAACAATTTGTAGAGCTCTACGTGATGGAGCATTCGAAGGAGAACACGCTCCTGCTCTAACTATAAAGGATACTATCGACGCGCCTCTCGGTTCCTTCGTCTTCAACCATATTCTTACGCAACTTACTTCTAACATTCTTGCCGGTAAATCACAAGCTCGGTCAGTTCGCTTCTTCATGAAATTCACTAATAGTTATCGAACTTCTTTTATGTGATAATTTGATAAATTCGTTAATTGATTGTTCATACAGAGGTGTTGTGCTGGTCGCTTTATCACGGCCTCCATCGTTCTATGTTGAACTGTTGAAGAATAAAGGTTTCGACGTTTCTTCATCGAGTAAATGGTTAGAATCTTCCTTCGTTTAGTGAGTAAATGTTAATTATGAGGATAAAATATGTGATTCTTTTTATGTACTGATTTTTGCTCACAAATCAGGCTAAGAGTTTTAGATTGCTATTCTGATCCTCTTGGATGGAAAAACAAGTTATTGGA</genome_strand>
        <mrna_strand>GGAATTCGCATTTCTCTGTGTTCAACAATGGCCGAAACAATTTGTAGAGCTCTACGTGATGGAGCATTCGAAGGAGAACACGCTCCTGCTCTAACTATAAAGGATACTATCGACGCGCCTCTCGGTTCCTTCGTCTTCAACCATATTCTTACGCAACTTACTTCTAACATTCTTGCCGGTAAATCACAAGCTCG...........................................................................................AGGTGTTGTGCTGGTCGCTTTATCACGGCCTCCATCGTTCTATGTTGAACTGTTGAAGAATAAAGGTTTCGACGTTTCTTCATCGAGTAAATG............................................................................................GCTAAGAGTTTTAGATTGCTATTCTGATCCTCTTGGATGGAAAAACAAGTTATTGGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0010E18-vqLN4/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E273772" ref_strand="+" ref_description="SGN-E273772 [cLEN-7-D19]">
      <seq>ctgtgttcaacaatggccgaaacaatttgtagagctctacgtgatggagcattcgaaggagaacacgctcctgctctaactataaaggatactatcgacgcgcctctcggttccttcgtcttcaaccatattcttacgcaacttacttctaacattcttgccggtaaatcacaagctcgaggtgttgtgctggtcgctttatcacggcctccatcgttctatgttgaactgttgaagaataaaggtttcgacgtttcttcatcgagtaaatggctaagagttttagattgctattctgatcctcttggatggaaaaacaagttattggagaggggaactgtaagaaatccctacgaagagaccttactggaaactaccttatgtaagaacttgtaagaattggacaaggttttggcttccattattgaacttggaaaagaaattgttgaagagggaaaagggagattagcagttgcaatagactcggttagtgagatcttgagac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0010E18-vqLN4/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02SLe0010E18.1" temp_strand="+" temp_description="C02SLe0010E18.1  AC215443.1 htgs_phase:3 submitted_to_sgn_as:C02SLe0010E18 sequenced_by:kribb upload_account_name:korea">
        <position start="49383" stop="52709"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="49683" g_stop="49861" g_length="179"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="179" r_length="179" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="49862" i_stop="49952" i_length="91">
            <donor d_prob="0.962" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="49953" g_stop="50045" g_length="93"/>
          <reference_exon_boundary r_type="cDNA" r_start="180" r_stop="272" r_length="93" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="50046" i_stop="50137" i_length="92">
            <donor d_prob="0.778" d_score="1.00"/>
            <acceptor a_prob="0.763" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="50138" g_stop="50304" g_length="167"/>
          <reference_exon_boundary r_type="cDNA" r_start="273" r_stop="439" r_length="167" r_score="0.982"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="50305" i_stop="50412" i_length="108">
            <donor d_prob="0.726" d_score="0.96"/>
            <acceptor a_prob="0.998" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="50413" g_stop="50459" g_length="47"/>
          <reference_exon_boundary r_type="cDNA" r_start="440" r_stop="486" r_length="47" r_score="0.979"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="50460" i_stop="52390" i_length="1931">
            <donor d_prob="0.872" d_score="0.98"/>
            <acceptor a_prob="0.994" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="52391" g_stop="52409" g_length="19"/>
          <reference_exon_boundary r_type="cDNA" r_start="487" r_stop="505" r_length="19" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLe0010E18.1" gen_strand="+" ref_id="SGN-E273772" ref_strand="+">
        <total_alignment_score>0.993</total_alignment_score>
        <cumulative_length_of_scored_exons>505</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0010E18.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E273772" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="49683" e_stop="49861"/>
          <exon e_start="49953" e_stop="50045"/>
          <exon e_start="50138" e_stop="50304"/>
          <exon e_start="50413" e_stop="50459"/>
          <exon e_start="52391" e_stop="52409"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTGTGTTCAACAATGGCCGAAACAATTTGTAGAGCTCTACGTGATGGAGCATTCGAAGGAGAACACGCTCCTGCTCTAACTATAAAGGATACTATCGACGCGCCTCTCGGTTCCTTCGTCTTCAACCATATTCTTACGCAACTTACTTCTAACATTCTTGCCGGTAAATCACAAGCTCGGTCAGTTCGCTTCTTCATGAAATTCACTAATAGTTATCGAACTTCTTTTATGTGATAATTTGATAAATTCGTTAATTGATTGTTCATACAGAGGTGTTGTGCTGGTCGCTTTATCACGGCCTCCATCGTTCTATGTTGAACTGTTGAAGAATAAAGGTTTCGACGTTTCTTCATCGAGTAAATGGTTAGAATCTTCCTTCGTTTAGTGAGTAAATGTTAATTATGAGGATAAAATATGTGATTCTTTTTATGTACTGATTTTTGCTCACAAATCAGGCTAAGAGTTTTAGATTGCTATTCTGATCCTCTTGGATGGAAAAACAAGTTATTGGAGAGGGGAACTGTAAGAAATCCCTACGAAGAGACCTTACTGAAAACTACCTTATGTAAGAACTTGAAAGAATTGGACAAGGTTTTGTCTTCCATTATTGAACTTGGAAAAGGTAAGGATTTGAGAATTTTTGTTAATTTGGGCACTCCCAAAGTTTAGGATAAACTTTTGTTGTGCTTTGGGAAATTCAAATGGATCTTGTTTGTTGCAATTATTGCAGAAATTGTTGAAGAGGGAAAAGGGAGATTTGCAGTTGCAATAGACTCGGTAATGCTAGTTAATTTTAGTTTGGTTCAGTAAGCAGAGAATGGATGTTGCTTATGTGTCAAGTGATTTTTTCATTGATTCAGATTGTTTGGTTTGAATTTCACTTCTAGATACCGTAATTTGTTGCAAAGATGTGTAGTTATCCCAGATAGCGAGCAACCAATAGTTTGTCCTAGTTAGTTTTTGTTGAAGGAAACTTCTCAGAAGGCCTGTTGGAATTTTCGTCCAGCATTCACATAAAAGGTTCTCTTCTCTTATTACCGCTCAATAGGAAGCCTGATTTAGGTAAAAACTTGCACCTTTTGGTCATCAACTTCTTCAAAGGATGAAAAATTACTCTATCCATTTCTCTAGCGATTGAAACATCAATCACATAAAAAACAATCAAACATGACAATCAGCAGTCTTAAAGTTCTGTCGCACCTTCTATTTTGTCAGTATGCTACATAAATGTGCGCACATTTATTGAGGAAACTTCCTAGATTTTTCTTAGATTAGTTCTTCTACCTTGCTTTCCAGTTACAAGCCATGAAAGTTCTCCTGTCCCTTTGTGAATGCACACAATATTGGGCACTTATACGCGAGGAAACTTCTCTAGTTTCTTACTTTACCTACAGTATTGAACCAGAGCTATTGTTTTATTACTAGAACCCACAATTTGTAGGTTTGCATAGTGGCTATACCATCATGCCAGTTTATCATCTCCATCAACTGATCCCCATATTTCGTTTTATTGAGACTGATGCTCAAATCTCAATGTAGCCACTGAATTTTTCAGGTTTAATAATTCCGAGTTCTCGATACACAATGTTTCAAATTATGGAAAAGATAAATAATTGCCTCGTCTAGTTGACTGGGAAAATCTTCAGCCTATGCAGTCGAAAGCAGTTGCTTAGTCAAATTCTCTAGCAATATAGAATTCTAGTTGTATCATTCTTGATTTCACTGTCAACTTATGGGAAGCAAATAAGATATGGTTCCTAAATAGTTGCATAACCTTTTAAACAAACTCTGAACACTTCTCTTACTCATAAGAACTGTTTTACCCGACTAGATCAAGATATTAGATGAGTTTGTGCAGAAAAGGATGCTTTAGAAATAGAAAGTGTGTTAATTAAGGCATTTATATCTCACTGTAGCATGGCGTTCAGTTAGATGTCTCACTTCTTTTAAGTTATTTACCTGTCTTCACCAAATAGGAGGTGAAGCATAATTTGTCTGTAGGACTTCTCATTTCTGGTTTATGCTGTATTTCATTCAAAATAATGTCGCTAGCTCTGTGGCATTGAATCAGTTTATAAGTTCCAAAATGATAAGAGTTTCTCTTGAGAAAGGTTGCGTTGGTTGTATATCTAAGTTGATAATTTTAAAGTACCAGTACATTTTGAGATGCTAGTTGACAATGTATTTATTGCGTAAATCTTTCTTATTACTTAACTAGAAATATCCTCCTTTTTGAGGTAAAATGATGTTCCGAGTTCTGATGTATCATTCCAAATTCTAATGCAAAGTTTTCCTGTCACCAAAAGGTAAAATTTTAATTAAAAAAAGAAAGGAAAGCAAAACGACCACCTAAGTAGTACTTAAGTATTAACTATTAAGATTAATCTCTTTAAGAAGCTACTGCTTTGCAGTGAATCAACTATTTAAATGTTTTATCATTACAAGTAGATACTAAGGCACAAAAAATTTGAAGGCTATGATGATAAACTAAAGAAGCGAATTACTTTTTGCTTCAGTTGTTGAAAGAGAAATAACTGAATTTTCAGTAAGATCTAGAGACATGCATAATTTTTTAATACTAAGAAATCCATTGATTTCAGTTTGAACATTTGCATGTTACTGCATTTCTAAACAGCAAATGTCTCCCTATTTGTGATTTCTCCATTTCTCTGAATACCATCATATTAACTTTCTAATTCTTTTTCCAGGTTAGTGAGATCTTGAGAC</genome_strand>
        <mrna_strand>CTGTGTTCAACAATGGCCGAAACAATTTGTAGAGCTCTACGTGATGGAGCATTCGAAGGAGAACACGCTCCTGCTCTAACTATAAAGGATACTATCGACGCGCCTCTCGGTTCCTTCGTCTTCAACCATATTCTTACGCAACTTACTTCTAACATTCTTGCCGGTAAATCACAAGCTCG...........................................................................................AGGTGTTGTGCTGGTCGCTTTATCACGGCCTCCATCGTTCTATGTTGAACTGTTGAAGAATAAAGGTTTCGACGTTTCTTCATCGAGTAAATG............................................................................................GCTAAGAGTTTTAGATTGCTATTCTGATCCTCTTGGATGGAAAAACAAGTTATTGGAGAGGGGAACTGTAAGAAATCCCTACGAAGAGACCTTACTGGAAACTACCTTATGTAAGAACTTGTAAGAATTGGACAAGGTTTTGGCTTCCATTATTGAACTTGGAAAAG............................................................................................................AAATTGTTGAAGAGGGAAAAGGGAGATTAGCAGTTGCAATAGACTCG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTAGTGAGATCTTGAGAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0010E18-vqLN4/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E725043" ref_strand="+" ref_description="SGN-E725043 [FC25DF04]">
      <seq>ggtgttcaacaatggccgaaacaatttgtagagctctacgtgatggagcattcgaaggagaacacgctcctgctctaactataaaggatactatcgacgcgcctctcggttccttcgtcttcaaccatattcttacgcaacttacttctaacattcttgccggtaaatcacaagctcgaggtgttgtgctggtcgctttatcacggcctccatcgttctatgttgaactgttgaagaataaaggtttcgacgtttcttcatcgagtaaatggctaaaagttttagattgctattctgatcctcttggatggaaaaacaagttattggagaggggaactgtaagaaatccctacgaagagaccttactgaaaactaccttatgtaagaacttgaaagaattggacaaggttttgtcttccattattgaacttggaaaagaaattgttgaagagggaaaagggagatttgcagttgcaatagactcggttagtgagatcttgagacattcatctctaccttccgtggcaagaatcttaagtcatcttcgcagtcatgaccaggtctcatgcatattctgcttgttgcatgtggaccttcatgaggccaaggtggctgccactcttgaatatttgtccactatgcatgcggatgtggaaccaatagttcaaagaacaaatggacagagaaacacctcagaggacctcccaatggtggaacagtcctttaagagaggaaaatttcatgtacgctttaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0010E18-vqLN4/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02SLe0010E18.1" temp_strand="+" temp_description="C02SLe0010E18.1  AC215443.1 htgs_phase:3 submitted_to_sgn_as:C02SLe0010E18 sequenced_by:kribb upload_account_name:korea">
        <position start="49385" stop="53516"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="49684" g_stop="49861" g_length="178"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="178" r_length="178" r_score="0.994"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="49862" i_stop="49952" i_length="91">
            <donor d_prob="0.962" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="49953" g_stop="50045" g_length="93"/>
          <reference_exon_boundary r_type="cDNA" r_start="179" r_stop="271" r_length="93" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="50046" i_stop="50137" i_length="92">
            <donor d_prob="0.778" d_score="1.00"/>
            <acceptor a_prob="0.763" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="50138" g_stop="50304" g_length="167"/>
          <reference_exon_boundary r_type="cDNA" r_start="272" r_stop="438" r_length="167" r_score="0.994"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="50305" i_stop="50412" i_length="108">
            <donor d_prob="0.726" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="50413" g_stop="50459" g_length="47"/>
          <reference_exon_boundary r_type="cDNA" r_start="439" r_stop="485" r_length="47" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="50460" i_stop="52390" i_length="1931">
            <donor d_prob="0.872" d_score="1.00"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="52391" g_stop="52460" g_length="70"/>
          <reference_exon_boundary r_type="cDNA" r_start="486" r_stop="555" r_length="70" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="52461" i_stop="53016" i_length="556">
            <donor d_prob="0.753" d_score="1.00"/>
            <acceptor a_prob="0.714" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="53017" g_stop="53216" g_length="200"/>
          <reference_exon_boundary r_type="cDNA" r_start="556" r_stop="755" r_length="200" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLe0010E18.1" gen_strand="+" ref_id="SGN-E725043" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>755</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0010E18.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E725043" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="49684" e_stop="49861"/>
          <exon e_start="49953" e_stop="50045"/>
          <exon e_start="50138" e_stop="50304"/>
          <exon e_start="50413" e_stop="50459"/>
          <exon e_start="52391" e_stop="52460"/>
          <exon e_start="53017" e_stop="53216"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGTGTTCAACAATGGCCGAAACAATTTGTAGAGCTCTACGTGATGGAGCATTCGAAGGAGAACACGCTCCTGCTCTAACTATAAAGGATACTATCGACGCGCCTCTCGGTTCCTTCGTCTTCAACCATATTCTTACGCAACTTACTTCTAACATTCTTGCCGGTAAATCACAAGCTCGGTCAGTTCGCTTCTTCATGAAATTCACTAATAGTTATCGAACTTCTTTTATGTGATAATTTGATAAATTCGTTAATTGATTGTTCATACAGAGGTGTTGTGCTGGTCGCTTTATCACGGCCTCCATCGTTCTATGTTGAACTGTTGAAGAATAAAGGTTTCGACGTTTCTTCATCGAGTAAATGGTTAGAATCTTCCTTCGTTTAGTGAGTAAATGTTAATTATGAGGATAAAATATGTGATTCTTTTTATGTACTGATTTTTGCTCACAAATCAGGCTAAGAGTTTTAGATTGCTATTCTGATCCTCTTGGATGGAAAAACAAGTTATTGGAGAGGGGAACTGTAAGAAATCCCTACGAAGAGACCTTACTGAAAACTACCTTATGTAAGAACTTGAAAGAATTGGACAAGGTTTTGTCTTCCATTATTGAACTTGGAAAAGGTAAGGATTTGAGAATTTTTGTTAATTTGGGCACTCCCAAAGTTTAGGATAAACTTTTGTTGTGCTTTGGGAAATTCAAATGGATCTTGTTTGTTGCAATTATTGCAGAAATTGTTGAAGAGGGAAAAGGGAGATTTGCAGTTGCAATAGACTCGGTAATGCTAGTTAATTTTAGTTTGGTTCAGTAAGCAGAGAATGGATGTTGCTTATGTGTCAAGTGATTTTTTCATTGATTCAGATTGTTTGGTTTGAATTTCACTTCTAGATACCGTAATTTGTTGCAAAGATGTGTAGTTATCCCAGATAGCGAGCAACCAATAGTTTGTCCTAGTTAGTTTTTGTTGAAGGAAACTTCTCAGAAGGCCTGTTGGAATTTTCGTCCAGCATTCACATAAAAGGTTCTCTTCTCTTATTACCGCTCAATAGGAAGCCTGATTTAGGTAAAAACTTGCACCTTTTGGTCATCAACTTCTTCAAAGGATGAAAAATTACTCTATCCATTTCTCTAGCGATTGAAACATCAATCACATAAAAAACAATCAAACATGACAATCAGCAGTCTTAAAGTTCTGTCGCACCTTCTATTTTGTCAGTATGCTACATAAATGTGCGCACATTTATTGAGGAAACTTCCTAGATTTTTCTTAGATTAGTTCTTCTACCTTGCTTTCCAGTTACAAGCCATGAAAGTTCTCCTGTCCCTTTGTGAATGCACACAATATTGGGCACTTATACGCGAGGAAACTTCTCTAGTTTCTTACTTTACCTACAGTATTGAACCAGAGCTATTGTTTTATTACTAGAACCCACAATTTGTAGGTTTGCATAGTGGCTATACCATCATGCCAGTTTATCATCTCCATCAACTGATCCCCATATTTCGTTTTATTGAGACTGATGCTCAAATCTCAATGTAGCCACTGAATTTTTCAGGTTTAATAATTCCGAGTTCTCGATACACAATGTTTCAAATTATGGAAAAGATAAATAATTGCCTCGTCTAGTTGACTGGGAAAATCTTCAGCCTATGCAGTCGAAAGCAGTTGCTTAGTCAAATTCTCTAGCAATATAGAATTCTAGTTGTATCATTCTTGATTTCACTGTCAACTTATGGGAAGCAAATAAGATATGGTTCCTAAATAGTTGCATAACCTTTTAAACAAACTCTGAACACTTCTCTTACTCATAAGAACTGTTTTACCCGACTAGATCAAGATATTAGATGAGTTTGTGCAGAAAAGGATGCTTTAGAAATAGAAAGTGTGTTAATTAAGGCATTTATATCTCACTGTAGCATGGCGTTCAGTTAGATGTCTCACTTCTTTTAAGTTATTTACCTGTCTTCACCAAATAGGAGGTGAAGCATAATTTGTCTGTAGGACTTCTCATTTCTGGTTTATGCTGTATTTCATTCAAAATAATGTCGCTAGCTCTGTGGCATTGAATCAGTTTATAAGTTCCAAAATGATAAGAGTTTCTCTTGAGAAAGGTTGCGTTGGTTGTATATCTAAGTTGATAATTTTAAAGTACCAGTACATTTTGAGATGCTAGTTGACAATGTATTTATTGCGTAAATCTTTCTTATTACTTAACTAGAAATATCCTCCTTTTTGAGGTAAAATGATGTTCCGAGTTCTGATGTATCATTCCAAATTCTAATGCAAAGTTTTCCTGTCACCAAAAGGTAAAATTTTAATTAAAAAAAGAAAGGAAAGCAAAACGACCACCTAAGTAGTACTTAAGTATTAACTATTAAGATTAATCTCTTTAAGAAGCTACTGCTTTGCAGTGAATCAACTATTTAAATGTTTTATCATTACAAGTAGATACTAAGGCACAAAAAATTTGAAGGCTATGATGATAAACTAAAGAAGCGAATTACTTTTTGCTTCAGTTGTTGAAAGAGAAATAACTGAATTTTCAGTAAGATCTAGAGACATGCATAATTTTTTAATACTAAGAAATCCATTGATTTCAGTTTGAACATTTGCATGTTACTGCATTTCTAAACAGCAAATGTCTCCCTATTTGTGATTTCTCCATTTCTCTGAATACCATCATATTAACTTTCTAATTCTTTTTCCAGGTTAGTGAGATCTTGAGACATTCATCTCTACCTTCCGTGGCAAGAATCTTAAGTCATCTTCGCAGTCATGGTAGGCACAGTTATTTTTGGCCATCATGTGTTGTAGCTTAGTAATGAAAATTTTGTGGTGCAAATGTTATGACAGCTAACTGTGAAATCAAGATTTGCTGTTGGCTTCCATCTGTTATAAACACTAAGCCACAATTATATGTTAACCTAAACAACTGGATATTCCTGCTGGAGAAATCATGATATCTGCATTTCCCAGATTTGGGCATCAAAATTTTCCTTTTGCTAGATGTATGAAGTTTCCTTCTTATGGTTAGTTTTAGGAGATTTCGTGCTGCCTTTACAACTTTGTTCTGATTTCTACCTTGGACCCCTGCTATCTGTAGTAAACTGTGTTCTTGTCGCTGCCTACTTTGCCTGGATATATATTTTTCTGGATATGGTTACTCCATTATTTCTGTCTGCCTGGCATAAACACAATGGTATAATCCATTGAGAACGTTGAGAAAAATAAGTCCACCAGCTTGGTTTATGCTGTCAAACAGAACCAAAATACTCTTGGCATGTTCTTGTATGGACTGCAAGGAGTTACCTAAACAAATTTATCTTGCTCGCAGACCAGGTCTCATGCATATTCTGCTTGTTGCATGTGGACCTTCATGAGGCCAAGGTGGCTGCCACTCTTGAATATTTGTCCACTATGCATGCGGATGTGGAACCAATAGTTCAAAGAACAAATGGACAGAGAAACACCTCAGAGGACCTCCCAATGGTGGAACAGTCCTTTAAGAGAGGAAAATTTCATGTACGCTTTAAA</genome_strand>
        <mrna_strand>GGTGTTCAACAATGGCCGAAACAATTTGTAGAGCTCTACGTGATGGAGCATTCGAAGGAGAACACGCTCCTGCTCTAACTATAAAGGATACTATCGACGCGCCTCTCGGTTCCTTCGTCTTCAACCATATTCTTACGCAACTTACTTCTAACATTCTTGCCGGTAAATCACAAGCTCG...........................................................................................AGGTGTTGTGCTGGTCGCTTTATCACGGCCTCCATCGTTCTATGTTGAACTGTTGAAGAATAAAGGTTTCGACGTTTCTTCATCGAGTAAATG............................................................................................GCTAAAAGTTTTAGATTGCTATTCTGATCCTCTTGGATGGAAAAACAAGTTATTGGAGAGGGGAACTGTAAGAAATCCCTACGAAGAGACCTTACTGAAAACTACCTTATGTAAGAACTTGAAAGAATTGGACAAGGTTTTGTCTTCCATTATTGAACTTGGAAAAG............................................................................................................AAATTGTTGAAGAGGGAAAAGGGAGATTTGCAGTTGCAATAGACTCG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTAGTGAGATCTTGAGACATTCATCTCTACCTTCCGTGGCAAGAATCTTAAGTCATCTTCGCAGTCATG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACCAGGTCTCATGCATATTCTGCTTGTTGCATGTGGACCTTCATGAGGCCAAGGTGGCTGCCACTCTTGAATATTTGTCCACTATGCATGCGGATGTGGAACCAATAGTTCAAAGAACAAATGGACAGAGAAACACCTCAGAGGACCTCCCAATGGTGGAACAGTCCTTTAAGAGAGGAAAATTTCATGTACGCTTTAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0010E18-vqLN4/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E361024" ref_strand="+" ref_description="SGN-E361024 [cLPP-13-J24]">
      <seq>caacgacgaagagtcaccggccggccagttggaggagctccatcaacaaactctagccgcctccttctggcttccactatctctctaattgttaaagcgttgcgtccaatgcacaaaagctgaccaatttcaacaaaaaccttttcgtagaatcacgcctgcgaatcgggagattggaaattcaatttgattgtgttggatataatttaaagaaaaaatgaaggcgaattgggaggtgaaggattgttgtaaccacgaccaagtcatcttccttgttaccattgctgtctacaccgtcttcatttttatcgtaactttctctctctaattctcttcatgtctttatctaatgctttactatcctggaaaatgtcacctccattagaagatccaataattttttccctctcaattgttcaaattggtgcgcgcaagaatctcaaagggctgacataattaaggttcaagaggaaatgttgttcattaagcagctccaaatgttgcaatcgaaattatggagaacatttattataacacctttcaagctcattactgtgtttcttcatga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0010E18-vqLN4/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02SLe0010E18.1" temp_strand="-" temp_description="C02SLe0010E18.1  AC215443.1 htgs_phase:3 submitted_to_sgn_as:C02SLe0010E18 sequenced_by:kribb upload_account_name:korea">
        <position start="58579" stop="56705"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="58279" g_stop="57851" g_length="429"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="431" r_length="431" r_score="0.916"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="57850" i_stop="57675" i_length="176">
            <donor d_prob="0.789" d_score="0.98"/>
            <acceptor a_prob="0.284" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="57674" g_stop="57590" g_length="85"/>
          <reference_exon_boundary r_type="cDNA" r_start="432" r_stop="515" r_length="84" r_score="0.929"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="57589" i_stop="57058" i_length="532">
            <donor d_prob="0.824" d_score="0.92"/>
            <acceptor a_prob="0.000" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="57057" g_stop="57005" g_length="53"/>
          <reference_exon_boundary r_type="cDNA" r_start="516" r_stop="568" r_length="53" r_score="0.981"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLe0010E18.1" gen_strand="-" ref_id="SGN-E361024" ref_strand="+">
        <total_alignment_score>0.924</total_alignment_score>
        <cumulative_length_of_scored_exons>567</cumulative_length_of_scored_exons>
        <coverage percentage="0.998" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0010E18.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E361024" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="58279" e_stop="57851"/>
          <exon e_start="57674" e_stop="57590"/>
          <exon e_start="57057" e_stop="57005"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAACGAGGAAGAGTCACCGGCCGGCCAGTTGGAGGAGCTCCATCAACAAACTCTAGCCGCCTCCTTCTGGCTTCCACTGTCTCTCTAATTGTTAAAGCAATTGCGTGCAATGCACAAAAGCTGACCAATTTCAACAAAAACCTTTTCGTAGAATCACGCCTGCGAATC-GGA-ATCGG-GAGAC-TGGAAATTCAATTTGATTGTGTTGGAAGAAAAAATGAAGGCGAATTGGGAGGTGAAGGATTGTTGTAACCACGACCAAGTCATCTTCCTTGTGACCATTGCTGTCTACACCGTCTTCATTTTTATCGTAACTTTCTCTCTCTAATTCTCTTTCATGTCTTTGTCTAATGCTTTACTATCCTGGAAAATGTCACCTCCATTAGAAGATCCAATATTTTTTTCCCTCTCAATTGTTCAAATTGGTGCGCGGTAACTCTGTTGTTCTATGGCTTCTTTTTTTTTAACTTCAATAACAACTAGGTCACCTACCTGGGTGCTTGACGATCCAATAATTGACAAAGCATAAAGTAGCTAATCTATTATCATAAATTAGGTCATAGTATTATTAATGACGCCTATAGCTTGGTTTTCATGGATTTCTTTAGCAAGAATCTCAATGGGCTGACATAATTAAGTTTCAAGAGGAAATGTTGTTCATTACGCAGCTCCAAATGTTACAATCGAAACTGAGTACTTCTAAATATTAGATCACCTGCTTTTGATTCAAAGTCAGTGTGAAATTGGATGATTTAGATAGTTCCTATGGGAATTGATTAAAAAAGCTGATTCATAACGTGCTGCTTTACCTCCATGTGTTTAAGCTTTTAAGTAATACACATAATTTGGTTGACACATGCTCCATTTCATCTGTGTGTATATGACATCTGATACGATAAGAATATTTTGAGTTGATAATTTTCAGTAGAGAAAAAACTTGATGTGTCTATATGTTTATACGTATCAGCTTGTCTTTTCGACTCATTGATGGTCTTCTTAAGAGTAAATAGAATGCCGAATTTGCATATATTCACAAGTGCAATACCATGTAATTAGCAAAATAATCTAGCCAGATTTCTTTGCATATGGCAACTTATCAAAAGTTCTACGAGTAGAAATTAACCAATTCTTGTTTTAGTTTTTGTCTGAAATATTTTTTGTTGTTTCTTCTTTGACGGTTTTTCACATTCAGTTTGCTTTTTTCTTTTAACAATTGAAACAGTTATGGAGAACATTTATTATAACTCCTTTCAAGCTCATTACTGTGTTTCTTCATGA</genome_strand>
        <mrna_strand>CAACGACGAAGAGTCACCGGCCGGCCAGTTGGAGGAGCTCCATCAACAAACTCTAGCCGCCTCCTTCTGGCTTCCACTATCTCTCTAATTGTTAAAGC-GTTGCGTCCAATGCACAAAAGCTGACCAATTTCAACAAAAACCTTTTCGTAGAATCACGCCTGCGAATCGGGAGATTGGAAATTCAATTTGATTGTGTTGGATATAATTTAAAGAAAAAATGAAGGCGAATTGGGAGGTGAAGGATTGTTGTAACCACGACCAAGTCATCTTCCTTGTTACCATTGCTGTCTACACCGTCTTCATTTTTATCGTAACTTTCTCTCTCTAATTCTC-TTCATGTCTTTATCTAATGCTTTACTATCCTGGAAAATGTCACCTCCATTAGAAGATCCAATAATTTTTTCCCTCTCAATTGTTCAAATTGGTGCGCG................................................................................................................................................................................CAAGAATCTCAAAGGGCTGACATAATTAAGGTTCAAGAGGAAATGTTGTTCATTAAGCAGCTCCAAATGTTGCAATCGAAA-TTA....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGGAGAACATTTATTATAACACCTTTCAAGCTCATTACTGTGTTTCTTCATGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0010E18-vqLN4/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E315219" ref_strand="+" ref_description="SGN-E315219 [cTOA-24-P20]">
      <seq>tacttttttcactgtcccaaaaaaaaaaaaaggatcttgaaaattcaagattcagtcaatccccttttctttctttccttttacatcttcctatagtcagttctagctgttttcttgaacagtagcacattgcgtgaaagttaaaggtattgctgtttctattttctttgtttgagagtgatttttcttgtgaaaagtatgtcataactgaacagagctcagggtattactgttcattgctattttcttgtttctgatatttttgcatgaaaatgtgaggggttttttttcctttctttttggggccaaggaggtgtgagtgatgtggtggataaaggggtcattggtttttttttcccaattaatgtgtagataatgtttgatagaagccaaagtatgtgaatcacattcagaagagtgtgagaaaaaggtgaagaaattcaagaaataatttattgtttttgaaagaggattgttagctcaagtagagaaatgaatgatagtttagccataacagcatcatcattggccattactgagaaaaagcctcaaaggcctgggggttgtgtgggtattttctttcaactctttgattggaaccgtagatttgccaagaagaagttgtttccaaagaaactgctttcaccagctcgcttgaaaaagcttcaaagaagtttggaggggatgaaaagcagccaaagcatcgtttgattgctaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0010E18-vqLN4/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02SLe0010E18.1" temp_strand="+" temp_description="C02SLe0010E18.1  AC215443.1 htgs_phase:3 submitted_to_sgn_as:C02SLe0010E18 sequenced_by:kribb upload_account_name:korea">
        <position start="67360" stop="68766"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="67660" g_stop="68308" g_length="649"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="649" r_length="649" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="68309" i_stop="68402" i_length="94">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="68403" g_stop="68464" g_length="62"/>
          <reference_exon_boundary r_type="cDNA" r_start="650" r_stop="710" r_length="61" r_score="0.984"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="68465" i_stop="68581" i_length="117">
            <donor d_prob="0.986" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="68582" g_stop="68589" g_length="8"/>
          <reference_exon_boundary r_type="cDNA" r_start="711" r_stop="718" r_length="8" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLe0010E18.1" gen_strand="+" ref_id="SGN-E315219" ref_strand="+">
        <total_alignment_score>0.999</total_alignment_score>
        <cumulative_length_of_scored_exons>719</cumulative_length_of_scored_exons>
        <coverage percentage="1.001" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0010E18.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E315219" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="67660" e_stop="68308"/>
          <exon e_start="68403" e_stop="68464"/>
          <exon e_start="68582" e_stop="68589"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TACTTTTTTCACTGTCCCAAAAAAAAAAAAAGGATCTTGAAAATTCAAGATTCAGTCAATCCCCTTTTCTTTCTTTCCTTTTACATCTTCCTATAGTCAGTTCTAGCTGTTTTCTTGAACAGTAGCACATTGCGTGAAAGTTAAAGGTATTGCTGTTTCTATTTTCTTTGTTTGAGAGTGATTTTTCTTGTGAAAAGTATGTCATAACTGAACAGAGCTCAGGGTATTACTGTTCATTGCTATTTTCTTGTTTCTGATATTTTTGCATGAAAATGTGAGGGGTTTTTTTTCCTTTCTTTTTGGGGCCAAGGAGGTGTGAGTGATGTGGTGGATAAAGGGGTCATTGGTTTTTTTTTCCCAATTAATGTGTAGATAATGTTTGATAGAAGCCAAAGTATGTGAATCACATTCAGAAGAGTGTGAGAAAAAGGTGAAGAAATTCAAGAAATAATTTATTGTTTTTGAAAGAGGATTGTTAGCTCAAGTAGAGAAATGAATGATAGTTTAGCCATAACAGCATCATCATTGGCCATTACTGAGAAAAAGCCTCAAAGGCCTGGGGGTTGTGTGGGTATTTTCTTTCAACTCTTTGATTGGAACCGTAGATTTGCCAAGAAGAAGTTGTTTCCAAAGAAACTGCTTTCACCAGGTTAGCTACTATATTCTACTCAATTTTTAAGCAAGAATGGTTGCTTTTTGCTAGAGGGATAAATGATTTCATTGTTTGTGTTGTATTCTTGTAGCTCGCTTGAAACAAGCTTCAAAGAAGTTTGGAGGGGATGAAAAGCAGCCAAAGCATCGTTTGGTACTCATTTCTTGAACAATACTGCTACATTTAGCTTTTTTTTTTTCTAGTGTCTCAGCTGTTAGCCTGATAAAGTTTCTGTTTTTATTGTTTTCTGCTCTTGTATGAACAATGTAGATTGCTAA</genome_strand>
        <mrna_strand>TACTTTTTTCACTGTCCCAAAAAAAAAAAAAGGATCTTGAAAATTCAAGATTCAGTCAATCCCCTTTTCTTTCTTTCCTTTTACATCTTCCTATAGTCAGTTCTAGCTGTTTTCTTGAACAGTAGCACATTGCGTGAAAGTTAAAGGTATTGCTGTTTCTATTTTCTTTGTTTGAGAGTGATTTTTCTTGTGAAAAGTATGTCATAACTGAACAGAGCTCAGGGTATTACTGTTCATTGCTATTTTCTTGTTTCTGATATTTTTGCATGAAAATGTGAGGGGTTTTTTTTCCTTTCTTTTTGGGGCCAAGGAGGTGTGAGTGATGTGGTGGATAAAGGGGTCATTGGTTTTTTTTTCCCAATTAATGTGTAGATAATGTTTGATAGAAGCCAAAGTATGTGAATCACATTCAGAAGAGTGTGAGAAAAAGGTGAAGAAATTCAAGAAATAATTTATTGTTTTTGAAAGAGGATTGTTAGCTCAAGTAGAGAAATGAATGATAGTTTAGCCATAACAGCATCATCATTGGCCATTACTGAGAAAAAGCCTCAAAGGCCTGGGGGTTGTGTGGGTATTTTCTTTCAACTCTTTGATTGGAACCGTAGATTTGCCAAGAAGAAGTTGTTTCCAAAGAAACTGCTTTCACCAG..............................................................................................CTCGCTTGAAA-AAGCTTCAAAGAAGTTTGGAGGGGATGAAAAGCAGCCAAAGCATCGTTTG.....................................................................................................................ATTGCTAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0010E18-vqLN4/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E315211" ref_strand="+" ref_description="SGN-E315211 [cTOA-24-L20]">
      <seq>tacttttttcactgtcccaaaaaaaaaaaaaggatcttgataattcaagattcagtcaatccccttttctttctttccttttacatcttcctatagtcagttctagctgttttcttgaacagtagcacattgcgtgaaagttaaaggtattgctgtttctattttctttgtttgagagtgatttttcttgtgaaaagtatgtcataactgaacagagctcagggtattactgttcattgctattttcttgtttctgatatttttgcatgaaaatgtgaggggttttttttcctttctttttggggcctaggaggtgtgagtgatgtggtggataaaggggtcattggtttttttttcccaattaat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0010E18-vqLN4/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02SLe0010E18.1" temp_strand="+" temp_description="C02SLe0010E18.1  AC215443.1 htgs_phase:3 submitted_to_sgn_as:C02SLe0010E18 sequenced_by:kribb upload_account_name:korea">
        <position start="67360" stop="68325"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="67660" g_stop="68025" g_length="366"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="366" r_length="366" r_score="0.995"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLe0010E18.1" gen_strand="+" ref_id="SGN-E315211" ref_strand="+">
        <total_alignment_score>0.995</total_alignment_score>
        <cumulative_length_of_scored_exons>366</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0010E18.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E315211" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="67660" e_stop="68025"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TACTTTTTTCACTGTCCCAAAAAAAAAAAAAGGATCTTGAAAATTCAAGATTCAGTCAATCCCCTTTTCTTTCTTTCCTTTTACATCTTCCTATAGTCAGTTCTAGCTGTTTTCTTGAACAGTAGCACATTGCGTGAAAGTTAAAGGTATTGCTGTTTCTATTTTCTTTGTTTGAGAGTGATTTTTCTTGTGAAAAGTATGTCATAACTGAACAGAGCTCAGGGTATTACTGTTCATTGCTATTTTCTTGTTTCTGATATTTTTGCATGAAAATGTGAGGGGTTTTTTTTCCTTTCTTTTTGGGGCCAAGGAGGTGTGAGTGATGTGGTGGATAAAGGGGTCATTGGTTTTTTTTTCCCAATTAAT</genome_strand>
        <mrna_strand>TACTTTTTTCACTGTCCCAAAAAAAAAAAAAGGATCTTGATAATTCAAGATTCAGTCAATCCCCTTTTCTTTCTTTCCTTTTACATCTTCCTATAGTCAGTTCTAGCTGTTTTCTTGAACAGTAGCACATTGCGTGAAAGTTAAAGGTATTGCTGTTTCTATTTTCTTTGTTTGAGAGTGATTTTTCTTGTGAAAAGTATGTCATAACTGAACAGAGCTCAGGGTATTACTGTTCATTGCTATTTTCTTGTTTCTGATATTTTTGCATGAAAATGTGAGGGGTTTTTTTTCCTTTCTTTTTGGGGCCTAGGAGGTGTGAGTGATGTGGTGGATAAAGGGGTCATTGGTTTTTTTTTCCCAATTAAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0010E18-vqLN4/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E725439" ref_strand="+" ref_description="SGN-E725439 [LA03BD07]">
      <seq>cttatcgatacagtcgacctaaaggggctgccacttaccctatatgttctattgctttgggagataaagcagatttagcactgcatcatttggaagtccctaatccttgtgtggattcaaagacttcggaagtgagagcatctgtgccttcatgtaaaaattgtggttatatgcttcatagtaagaatggtacaccaaatggggaagaacacccatcgtctgtctcgtcacctgtctctagttactctcaaccttcttgtcaaggtccaggaagaaatatgctaaggttgcccattatcaacagcagagatcaattagagagagtttttgagggttcgtcttcagacgccaatgctngaatagatgatgtatcatactgtgcagagctcatattgcgcaagcgacctattagcagaagtcgaatagcgatgcatggcgcctgccanggggagcatgtgcataaagatgcatcatctgtcactcatgtgcttaacc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0010E18-vqLN4/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02SLe0010E18.1" temp_strand="+" temp_description="C02SLe0010E18.1  AC215443.1 htgs_phase:3 submitted_to_sgn_as:C02SLe0010E18 sequenced_by:kribb upload_account_name:korea">
        <position start="68789" stop="69851"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="69091" g_stop="69551" g_length="461"/>
          <reference_exon_boundary r_type="cDNA" r_start="35" r_stop="495" r_length="461" r_score="0.959"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLe0010E18.1" gen_strand="+" ref_id="SGN-E725439" ref_strand="+">
        <total_alignment_score>0.959</total_alignment_score>
        <cumulative_length_of_scored_exons>461</cumulative_length_of_scored_exons>
        <coverage percentage="0.931" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0010E18.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E725439" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="69091" e_stop="69551"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTATCCTAAATATTTTTCTCCTTTGGAAGATAAAGCAGATTTAGCACTGCATCATTTGGAAGTCCCTAATCCTTGTGTGGATTCAAAGACTTCGGAAGTGAGAGCATCTGTGCCTTCATGTAAAAATTGTGGTTATATGCTTCATAGTAAGAATGGTACACCAAATGGGGAAGAACACCCATCGTCTGTCTCGTCACCTGTCTCTAGTTACTCTCAACCTTCTTGTCAAGGTCCAGGAAGAAATATGCTAAGGTTGCCCATTATCAACAGCAGAGATCAATTAGAGAGAGTTTTTGAGGGTTCGTCTTCAGACGCCAATGCTGAAATAGATGATGTATCATACTGTGCAGAGCTCATATTGGGCAAGCGACCTATTAGCAGAAGTCGAATAGCGATGCATGGCGCCTGCCAAGGGAGCAATGTGAAAAAGGATGCATCATCTGTCACTCATGTGCTTAACC</genome_strand>
        <mrna_strand>TTACCCTATATGTTCTATTGCTTTGGGAGATAAAGCAGATTTAGCACTGCATCATTTGGAAGTCCCTAATCCTTGTGTGGATTCAAAGACTTCGGAAGTGAGAGCATCTGTGCCTTCATGTAAAAATTGTGGTTATATGCTTCATAGTAAGAATGGTACACCAAATGGGGAAGAACACCCATCGTCTGTCTCGTCACCTGTCTCTAGTTACTCTCAACCTTCTTGTCAAGGTCCAGGAAGAAATATGCTAAGGTTGCCCATTATCAACAGCAGAGATCAATTAGAGAGAGTTTTTGAGGGTTCGTCTTCAGACGCCAATGCTNGAATAGATGATGTATCATACTGTGCAGAGCTCATATTGCGCAAGCGACCTATTAGCAGAAGTCGAATAGCGATGCATGGCGCCTGCCANGGGGAGCATGTGCATAAAGATGCATCATCTGTCACTCATGTGCTTAACC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0010E18-vqLN4/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E279266" ref_strand="+" ref_description="SGN-E279266 [cLEL-4-I10](-)">
      <seq>ctggagacattcatcaatctcttcttccgcaccggagagagggaatcacttcctcctgaataaggttttctttcagtttcaaacttgcagccatcggctgtggctggcattctcaatcgggtagatgcacctaaccttctattctgtgcaacaaaacttttggtattaatcgtagattctgcagctgctaaaactctgttgctctgcaaactactttgcttagacttcataaatcccctctctctattctgagatgtttgattttgcttctggttaagcacatgagtgacagatgatgcatcctttttcacattgctcccttggcaggcgccatgcatcgctattcgacttctgctaataggtcgcttgcccaatatgagctctgcacagtatgatacatcatctatttcagctcgtgc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0010E18-vqLN4/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02SLe0010E18.1" temp_strand="-" temp_description="C02SLe0010E18.1  AC215443.1 htgs_phase:3 submitted_to_sgn_as:C02SLe0010E18 sequenced_by:kribb upload_account_name:korea">
        <position start="70122" stop="69104"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="69822" g_stop="69404" g_length="419"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="419" r_length="419" r_score="0.983"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLe0010E18.1" gen_strand="-" ref_id="SGN-E279266" ref_strand="+">
        <total_alignment_score>0.983</total_alignment_score>
        <cumulative_length_of_scored_exons>419</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0010E18.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E279266" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="69822" e_stop="69404"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTGGAGACATTCATCAATCTCTTCTTCCGCACCGGAGAGAGGGAATCACTTCTCCTTGAATAAGGTTTTCTTTCAGTTTCAAACTTGCAGCCATCGGCTGTGGCTGGCATTCTCAATCGGGTAGATGCACCTAACCTTCTATTCTGTGCAACAAAACTTTTGGTATTAATCGTAGATTCTGCAGCTGCTAAAACTCTGTTGCTCTGCAAACTACTTTGCTTAGACTTCATAAATCCCCTCTCTCTATTCTGAGATGTTTGATTTTGCTTCTGGTTAAGCACATGAGTGACAGATGATGCATCCTTTTTCACATTGCTCCCTTGGCAGGCGCCATGCATCGCTATTCGACTTCTGCTAATAGGTCGCTTGCCCAATATGAGCTCTGCACAGTATGATACATCATCTATTTCAGCATTGGC</genome_strand>
        <mrna_strand>CTGGAGACATTCATCAATCTCTTCTTCCGCACCGGAGAGAGGGAATCACTTCCTCCTGAATAAGGTTTTCTTTCAGTTTCAAACTTGCAGCCATCGGCTGTGGCTGGCATTCTCAATCGGGTAGATGCACCTAACCTTCTATTCTGTGCAACAAAACTTTTGGTATTAATCGTAGATTCTGCAGCTGCTAAAACTCTGTTGCTCTGCAAACTACTTTGCTTAGACTTCATAAATCCCCTCTCTCTATTCTGAGATGTTTGATTTTGCTTCTGGTTAAGCACATGAGTGACAGATGATGCATCCTTTTTCACATTGCTCCCTTGGCAGGCGCCATGCATCGCTATTCGACTTCTGCTAATAGGTCGCTTGCCCAATATGAGCTCTGCACAGTATGATACATCATCTATTTCAGCTCGTGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0010E18-vqLN4/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E738958" ref_strand="+" ref_description="SGN-E738958 [LC15CD07]">
      <seq>aatcctttcctttgaaaggagacattttaggagcacttttggagcaaaagctaaaggaattgactagtgaagaagagttcgcagaaggagatgctgcacctagaaaaagcactgcaacgatccttcaggagctaataactgctttgaatgatgagacccaatttcatctggatagtttgccttctaaacctaacagaaaagaagatttgtatgatgatcgtgaagtgtcttcaagaaatacttccatgaatttccaggccataccagattcagcaaccgatttagttgggaattcacttgataatgatcaccttagtccaggatgtgttcttgaagctaccttttcaactgacagctacctctccagcagtcccaatagtagctcaaaggacaaagtgcttgccgaatctgtggactctatttatgacgaaccactctttccagaacctgatagagatctttcggattgtgcgacctcattattcaccaggaggagttgcagagcactgatcacagaccatgttaacaacatttctggagtgctaagcaagattaatcagttaaaaggaagcaaactcggttatgcaaatgaggtcattttgaatactgaactcatacttggaacctcacctgaacaacaggctttacctgtagacgatgggttatcagtgagccattttctcctcaatgaacttgaaatgctatcaagtcttctatggatgacttttggtcagttgcttggctgtaacgaccccaaacagatgaatcagcttaaaggatttgcctttgattgtctattagagtatctagactcaaaatttggtcgatactctgattctggtttc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0010E18-vqLN4/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02SLe0010E18.1" temp_strand="+" temp_description="C02SLe0010E18.1  AC215443.1 htgs_phase:3 submitted_to_sgn_as:C02SLe0010E18 sequenced_by:kribb upload_account_name:korea">
        <position start="69855" stop="72648"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="70155" g_stop="70411" g_length="257"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="257" r_length="257" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="70412" i_stop="71630" i_length="1219">
            <donor d_prob="0.993" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="71631" g_stop="71760" g_length="130"/>
          <reference_exon_boundary r_type="cDNA" r_start="258" r_stop="387" r_length="130" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="71761" i_stop="71890" i_length="130">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.299" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="71891" g_stop="72348" g_length="458"/>
          <reference_exon_boundary r_type="cDNA" r_start="388" r_stop="845" r_length="458" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLe0010E18.1" gen_strand="+" ref_id="SGN-E738958" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>845</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0010E18.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E738958" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="70155" e_stop="70411"/>
          <exon e_start="71631" e_stop="71760"/>
          <exon e_start="71891" e_stop="72348"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AATCCTTTCCTTTGAAAGGAGACATTTTAGGAGCACTTTTGGAGCAAAAGCTAAAGGAATTGACTAGTGAAGAAGAGTTCGCAGAAGGAGATGCTGCACCTAGAAAAAGCACTGCAACGATCCTTCAGGAGCTAATAACTGCTTTGAATGATGAGACCCAATTTCATCTGGATAGTTTGCCTTCTAAACCTAACAGAAAAGAAGATTTGTATGATGATCGTGAAGTGTCTTCAAGAAATACTTCCATGAATTTCCAGGTAACCATCGCTTAAATGTTAACTATTGAAATTGCAATGAATGAAATGTTTTCCTTTATAAAGCTGGAGCGACGAAAATATATTTCTTAAGAGGGGTAAACAGCTTTGGACTTCTGGATAATTCATAACATACATTTGATGTTACTAGTTCTCTTCCTATCTTTCTACGATTACTACACCAATATTTGGTGCTAGTGCAGTTAAGAACTCAAGATCACTTATACAACACACTATCCTACGGAAGAACACTTCTGTTTGGTTTATGATATGTAGTCAGAGCACAGAGGAAAATCCGATAGTAGCTAACATTCAGAAAGACTAGATCAAGCAAAACCTAGTAATGCTGTAGATAAATGGAGCAGTCTTTCATACTGGGTGACATTATGCTAAATTTCATGATTGGTTAATCTGACTGGTTTGGCTTTAGCTGAGTGGGTTGAACTGTTCTTTGACTATGAGAGGACTTGGCAGCATCAACACTGGCTGATTGAAAATACTTATTACAATCATGGTGTTTAGGCATCAAAGAACCACAATCTTGCTTGGTTGATTTAGTTCCATTTGATTGGATTCCCAGATTAGTTGCATAGAAGGATCTTTCTTCCCATTCATTTTCCATTTGAAATGAGAAGTGCATATTCCACGCACACTGTTTAACTGTTTTTGGTTTTGATAAGGGTTTAATTTTATATAAGAACAGTTGGATAGTGTATCAAAAGTTACAGATTGTGCAAATTTGGTATCATCTCTATCAGGGAATCTACATCATTTACTATGACCAGGTTGCACCAAAAAGCTAGCAAATACATCTGTGCTAAGCTATGCATAGTTCTTCTTAATGCAATGTATGCATCTGTGCTCAAAGCTATTAGTGGCCAGGAATTACCATTTCAGAATACTAATGGTTCTTACTTTCTTAATGCATAAAAGCCAGTTTATCAGTGTTTCCGTTAAGTACATATCCCGGGCTAGGCACCTGATTTATGATAGATATTTAGCAGCAGCCTCGTAAAATTTTAACACCCAAGGCTTCTGAGTTATGAGAAGGCCTTCTCTTCTTTCGTCACTCAGCCAAAAGATTGAGTTATTATTTAGCATTTTTCCCCTCAATAATTTCTTTCCTTGCTTTTTAAGTGCATGAAATTTTAAATGCTCTTGCTTCGGTTATAAACCGAGCTATCAGTCTGAATCTTATTGTTGCTTTTGAATTTGTGCTCAGGCCATACCAGATTCAGCAACCGATTTAGTTGGGAATTCACTTGATAATGATCACCTTAGTCCAGGATGTGTTCTTGAAGCTACCTTTTCAACTGACAGCTACCTCTCCAGCAGTCCCAATAGTAGCTCAAGTATGATCCTTCATACACATTTTACTATTTGCATACTTCCTTCCTTTCTCTCAAAACACATAAAAATGAAAAAAAAAGAAGGGGATTTTATGCATACATGCTTCTAATGTATATGCCTGTGTACCTCCAGAGGACAAAGTGCTTGCCGAATCTGTGGACTCTATTTATGACGAACCACTCTTTCCAGAACCTGATAGAGATCTTTCGGATTGTGCGACCTCATTATTCACCAGGAGGAGTTGCAGAGCACTGATCACAGACCATGTTAACAACATTTCTGGAGTGCTAAGCAAGATTAATCAGTTAAAAGGAAGCAAACTCGGTTATGCAAATGAGGTCATTTTGAATACTGAACTCATACTTGGAACCTCACCTGAACAACAGGCTTTACCTGTAGACGATGGGTTATCAGTGAGCCATTTTCTCCTCAATGAACTTGAAATGCTATCAAGTCTTCTATGGATGACTTTTGGTCAGTTGCTTGGCTGTAACGACCCCAAACAGATGAATCAGCTTAAAGGATTTGCCTTTGATTGTCTATTAGAGTATCTAGACTCAAAATTTGGTCGATACTCTGATTCTGGTTTC</genome_strand>
        <mrna_strand>AATCCTTTCCTTTGAAAGGAGACATTTTAGGAGCACTTTTGGAGCAAAAGCTAAAGGAATTGACTAGTGAAGAAGAGTTCGCAGAAGGAGATGCTGCACCTAGAAAAAGCACTGCAACGATCCTTCAGGAGCTAATAACTGCTTTGAATGATGAGACCCAATTTCATCTGGATAGTTTGCCTTCTAAACCTAACAGAAAAGAAGATTTGTATGATGATCGTGAAGTGTCTTCAAGAAATACTTCCATGAATTTCCAG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCCATACCAGATTCAGCAACCGATTTAGTTGGGAATTCACTTGATAATGATCACCTTAGTCCAGGATGTGTTCTTGAAGCTACCTTTTCAACTGACAGCTACCTCTCCAGCAGTCCCAATAGTAGCTCAA..................................................................................................................................AGGACAAAGTGCTTGCCGAATCTGTGGACTCTATTTATGACGAACCACTCTTTCCAGAACCTGATAGAGATCTTTCGGATTGTGCGACCTCATTATTCACCAGGAGGAGTTGCAGAGCACTGATCACAGACCATGTTAACAACATTTCTGGAGTGCTAAGCAAGATTAATCAGTTAAAAGGAAGCAAACTCGGTTATGCAAATGAGGTCATTTTGAATACTGAACTCATACTTGGAACCTCACCTGAACAACAGGCTTTACCTGTAGACGATGGGTTATCAGTGAGCCATTTTCTCCTCAATGAACTTGAAATGCTATCAAGTCTTCTATGGATGACTTTTGGTCAGTTGCTTGGCTGTAACGACCCCAAACAGATGAATCAGCTTAAAGGATTTGCCTTTGATTGTCTATTAGAGTATCTAGACTCAAAATTTGGTCGATACTCTGATTCTGGTTTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0010E18-vqLN4/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E330912" ref_strand="+" ref_description="SGN-E330912 [cTOD-10-C24]">
      <seq>agaaaagaagatttgtatgatgatcgtgaagtgtcttcaagaaatacttccatgaatttccaggccataccagattcagcaaccgatttagttgggaattcacttgataatgatcaccttagtccaggatgtgttcttgaagctaccttttcaactgacagctacctctccagcagtcccaatagtagctcaaaggacaaagtgcttgccgaatctgtggactctatttatgacgaaccactctttccagaacctgatagagatctttcggattgtgcgacctcattattcaccaggaggagttgcagagcactgatcacagaccatgttaacaacatttctggagtgctaagcaagattaatcagttaaaaggaagcaaactcggttatgcaaatgaggtcattttgaatactgaactcatacttggaacctcacctgaacaacaggctttacctgtag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0010E18-vqLN4/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02SLe0010E18.1" temp_strand="+" temp_description="C02SLe0010E18.1  AC215443.1 htgs_phase:3 submitted_to_sgn_as:C02SLe0010E18 sequenced_by:kribb upload_account_name:korea">
        <position start="70049" stop="72457"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="70349" g_stop="70411" g_length="63"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="63" r_length="63" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="70412" i_stop="71630" i_length="1219">
            <donor d_prob="0.993" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="71631" g_stop="71760" g_length="130"/>
          <reference_exon_boundary r_type="cDNA" r_start="64" r_stop="193" r_length="130" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="71761" i_stop="71890" i_length="130">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.299" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="71891" g_stop="72157" g_length="267"/>
          <reference_exon_boundary r_type="cDNA" r_start="194" r_stop="460" r_length="267" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLe0010E18.1" gen_strand="+" ref_id="SGN-E330912" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>460</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0010E18.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E330912" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="70349" e_stop="70411"/>
          <exon e_start="71631" e_stop="71760"/>
          <exon e_start="71891" e_stop="72157"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGAAAAGAAGATTTGTATGATGATCGTGAAGTGTCTTCAAGAAATACTTCCATGAATTTCCAGGTAACCATCGCTTAAATGTTAACTATTGAAATTGCAATGAATGAAATGTTTTCCTTTATAAAGCTGGAGCGACGAAAATATATTTCTTAAGAGGGGTAAACAGCTTTGGACTTCTGGATAATTCATAACATACATTTGATGTTACTAGTTCTCTTCCTATCTTTCTACGATTACTACACCAATATTTGGTGCTAGTGCAGTTAAGAACTCAAGATCACTTATACAACACACTATCCTACGGAAGAACACTTCTGTTTGGTTTATGATATGTAGTCAGAGCACAGAGGAAAATCCGATAGTAGCTAACATTCAGAAAGACTAGATCAAGCAAAACCTAGTAATGCTGTAGATAAATGGAGCAGTCTTTCATACTGGGTGACATTATGCTAAATTTCATGATTGGTTAATCTGACTGGTTTGGCTTTAGCTGAGTGGGTTGAACTGTTCTTTGACTATGAGAGGACTTGGCAGCATCAACACTGGCTGATTGAAAATACTTATTACAATCATGGTGTTTAGGCATCAAAGAACCACAATCTTGCTTGGTTGATTTAGTTCCATTTGATTGGATTCCCAGATTAGTTGCATAGAAGGATCTTTCTTCCCATTCATTTTCCATTTGAAATGAGAAGTGCATATTCCACGCACACTGTTTAACTGTTTTTGGTTTTGATAAGGGTTTAATTTTATATAAGAACAGTTGGATAGTGTATCAAAAGTTACAGATTGTGCAAATTTGGTATCATCTCTATCAGGGAATCTACATCATTTACTATGACCAGGTTGCACCAAAAAGCTAGCAAATACATCTGTGCTAAGCTATGCATAGTTCTTCTTAATGCAATGTATGCATCTGTGCTCAAAGCTATTAGTGGCCAGGAATTACCATTTCAGAATACTAATGGTTCTTACTTTCTTAATGCATAAAAGCCAGTTTATCAGTGTTTCCGTTAAGTACATATCCCGGGCTAGGCACCTGATTTATGATAGATATTTAGCAGCAGCCTCGTAAAATTTTAACACCCAAGGCTTCTGAGTTATGAGAAGGCCTTCTCTTCTTTCGTCACTCAGCCAAAAGATTGAGTTATTATTTAGCATTTTTCCCCTCAATAATTTCTTTCCTTGCTTTTTAAGTGCATGAAATTTTAAATGCTCTTGCTTCGGTTATAAACCGAGCTATCAGTCTGAATCTTATTGTTGCTTTTGAATTTGTGCTCAGGCCATACCAGATTCAGCAACCGATTTAGTTGGGAATTCACTTGATAATGATCACCTTAGTCCAGGATGTGTTCTTGAAGCTACCTTTTCAACTGACAGCTACCTCTCCAGCAGTCCCAATAGTAGCTCAAGTATGATCCTTCATACACATTTTACTATTTGCATACTTCCTTCCTTTCTCTCAAAACACATAAAAATGAAAAAAAAAGAAGGGGATTTTATGCATACATGCTTCTAATGTATATGCCTGTGTACCTCCAGAGGACAAAGTGCTTGCCGAATCTGTGGACTCTATTTATGACGAACCACTCTTTCCAGAACCTGATAGAGATCTTTCGGATTGTGCGACCTCATTATTCACCAGGAGGAGTTGCAGAGCACTGATCACAGACCATGTTAACAACATTTCTGGAGTGCTAAGCAAGATTAATCAGTTAAAAGGAAGCAAACTCGGTTATGCAAATGAGGTCATTTTGAATACTGAACTCATACTTGGAACCTCACCTGAACAACAGGCTTTACCTGTAG</genome_strand>
        <mrna_strand>AGAAAAGAAGATTTGTATGATGATCGTGAAGTGTCTTCAAGAAATACTTCCATGAATTTCCAG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCCATACCAGATTCAGCAACCGATTTAGTTGGGAATTCACTTGATAATGATCACCTTAGTCCAGGATGTGTTCTTGAAGCTACCTTTTCAACTGACAGCTACCTCTCCAGCAGTCCCAATAGTAGCTCAA..................................................................................................................................AGGACAAAGTGCTTGCCGAATCTGTGGACTCTATTTATGACGAACCACTCTTTCCAGAACCTGATAGAGATCTTTCGGATTGTGCGACCTCATTATTCACCAGGAGGAGTTGCAGAGCACTGATCACAGACCATGTTAACAACATTTCTGGAGTGCTAAGCAAGATTAATCAGTTAAAAGGAAGCAAACTCGGTTATGCAAATGAGGTCATTTTGAATACTGAACTCATACTTGGAACCTCACCTGAACAACAGGCTTTACCTGTAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0010E18-vqLN4/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E256318" ref_strand="+" ref_description="SGN-E256318 [cLEG-37-O1]">
      <seq>ataaaacatgattgagagaaatcatgctgctaatggttcattacagttagtggatatgtgatataatagatactttaatctggtaaaagcttgatctggttgttccttagtatgtcatctgaaaggtgcttcctgtataaatcctttagctcttgtgttctatttcccatgttggttctgtcattaaatgtgtagttttcatgatgttgcatcttttatagttcttgcttttattaacaaaagtaacaaagcgcttctttcttctctctatccttttccctgatcattctcgtttccatttttgggtgatatttattttttgggagcggagggctctttattcttctttggttaatatggacctaatccaaatgttttttatactaggttggaccgcttgcagcatattatcaggtgccaatgcgtcacatccttctggtttacgacgagatgagcttacccaatggtattttgagactccagccaaaaggaggacatggccatcataatggggtgaaaagtgtgatggagcatttgaatggtcgccgggaatttccacgattttgcataggcattgggaatccacctgggactatggacatgaaggcatatctgttacaaaaattcagtgata</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0010E18-vqLN4/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02SLe0010E18.1" temp_strand="-" temp_description="C02SLe0010E18.1  AC215443.1 htgs_phase:3 submitted_to_sgn_as:C02SLe0010E18 sequenced_by:kribb upload_account_name:korea">
        <position start="76401" stop="74710"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="76101" g_stop="75664" g_length="438"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="438" r_length="438" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="75663" i_stop="75501" i_length="163">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.993" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="75500" g_stop="75427" g_length="74"/>
          <reference_exon_boundary r_type="cDNA" r_start="439" r_stop="512" r_length="74" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="75426" i_stop="75266" i_length="161">
            <donor d_prob="0.907" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="75265" g_stop="75207" g_length="59"/>
          <reference_exon_boundary r_type="cDNA" r_start="513" r_stop="571" r_length="59" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="75206" i_stop="75073" i_length="134">
            <donor d_prob="0.883" d_score="1.00"/>
            <acceptor a_prob="0.987" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="75072" g_stop="75010" g_length="63"/>
          <reference_exon_boundary r_type="cDNA" r_start="572" r_stop="634" r_length="63" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLe0010E18.1" gen_strand="-" ref_id="SGN-E256318" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>634</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0010E18.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E256318" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="76101" e_stop="75664"/>
          <exon e_start="75500" e_stop="75427"/>
          <exon e_start="75265" e_stop="75207"/>
          <exon e_start="75072" e_stop="75010"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATAAAACATGATTGAGAGAAATCATGCTGCTAATGGTTCATTACAGTTAGTGGATATGTGATATAATAGATACTTTAATCTGGTAAAAGCTTGATCTGGTTGTTCCTTAGTATGTCATCTGAAAGGTGCTTCCTGTATAAATCCTTTAGCTCTTGTGTTCTATTTCCCATGTTGGTTCTGTCATTAAATGTGTAGTTTTCATGATGTTGCATCTTTTATAGTTCTTGCTTTTATTAACAAAAGTAACAAAGCGCTTCTTTCTTCTCTCTATCCTTTTCCCTGATCATTCTCGTTTCCATTTTTGGGTGATATTTATTTTTTGGGAGCGGAGGGCTCTTTATTCTTCTTTGGTTAATATGGACCTAATCCAAATGTTTTTTATACTAGGTTGGACCGCTTGCAGCATATTATCAGGTGCCAATGCGTCACATCCTTCTGGTATGACTTTTTTTTTTTTTCATTTTTTGATAACTGTAGGAGATAGTTTATCTTTGCCTTTTTTAGGGTTGAGGTTGGTAGTCTATGCTGGATAATACTATGTACGTGATCCTCCTCTTTTTCCATGATTTGAAGTTCACAGTGTTTGTACTCATCCTTGTAGGTTTACGACGAGATGAGCTTACCCAATGGTATTTTGAGACTCCAGCCAAAAGGAGGACATGGCCATCATAATGGGTATTATTCTTGAGTAGTCAAATCTAAATGGCACTGGCTTTGTGATCATATTGTGTGTAATATTAGCTTATTGGTTCTTTCCAATGGACAAATCATCAAGAGCTCTGTTAACCGTGCAGAGTATAGCAAATTCACATTTGATTTCTGTTTTTATTTGGCAGGGTGAAAAGTGTGATGGAGCATTTGAATGGTCGCCGGGAATTTCCACGATTTTGCATAGGTTCCTACTGACTGCTTACCATTTGTTGTGAAAGCATAATCACATAATTACAAATTGAAACTGTGTTCATATTCTACAAAATTGCTCTAACAAATCCCAAGCTAAAAGCCATGTTTTTCATGTATATGGTGTAGGCATTGGGAATCCACCTGGGACTATGGACATGAAGGCATATCTGTTACAAAAATTCAGTGATA</genome_strand>
        <mrna_strand>ATAAAACATGATTGAGAGAAATCATGCTGCTAATGGTTCATTACAGTTAGTGGATATGTGATATAATAGATACTTTAATCTGGTAAAAGCTTGATCTGGTTGTTCCTTAGTATGTCATCTGAAAGGTGCTTCCTGTATAAATCCTTTAGCTCTTGTGTTCTATTTCCCATGTTGGTTCTGTCATTAAATGTGTAGTTTTCATGATGTTGCATCTTTTATAGTTCTTGCTTTTATTAACAAAAGTAACAAAGCGCTTCTTTCTTCTCTCTATCCTTTTCCCTGATCATTCTCGTTTCCATTTTTGGGTGATATTTATTTTTTGGGAGCGGAGGGCTCTTTATTCTTCTTTGGTTAATATGGACCTAATCCAAATGTTTTTTATACTAGGTTGGACCGCTTGCAGCATATTATCAGGTGCCAATGCGTCACATCCTTCTG...................................................................................................................................................................GTTTACGACGAGATGAGCTTACCCAATGGTATTTTGAGACTCCAGCCAAAAGGAGGACATGGCCATCATAATGG.................................................................................................................................................................GGTGAAAAGTGTGATGGAGCATTTGAATGGTCGCCGGGAATTTCCACGATTTTGCATAG......................................................................................................................................GCATTGGGAATCCACCTGGGACTATGGACATGAAGGCATATCTGTTACAAAAATTCAGTGATA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0010E18-vqLN4/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E324042" ref_strand="+" ref_description="SGN-E324042 [cTOC-3-I5]">
      <seq>agaaacataaatggtggtgtcgggcaaattcactctgcccaacagtgcttcttcttagcttgaatcattttcttgacccgtataaacagagagaagagtccaattgaggtcaatgttgcatgcagtatatgccccaaaaagttgcagtatatcgtattcaagaatcccttgttatcaaaagcctttagccccaacaaggcttagagtatcagcttcacttccagagcctaatggggttaaggttgagttcactccttggttaattgttggattgggaaatcctggaaacaagtatcacggaactcgacacaatgttggtttcgagatgattgatagagtttctcaagaggagggtatcgtgttaaacacaatacagtcgaaggccttgatagggataggttccattggggaggtacctgttgtattggcaaagcctcaggcctacatgaatttcagtggagaagcagttggaccgcttgcagcatattatcaggtgccaatgcgtcaca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0010E18-vqLN4/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02SLe0010E18.1" temp_strand="-" temp_description="C02SLe0010E18.1  AC215443.1 htgs_phase:3 submitted_to_sgn_as:C02SLe0010E18 sequenced_by:kribb upload_account_name:korea">
        <position start="78424" stop="75372"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="78124" g_stop="78017" g_length="108"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="108" r_length="108" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="78016" i_stop="77920" i_length="97">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.884" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="77919" g_stop="77715" g_length="205"/>
          <reference_exon_boundary r_type="cDNA" r_start="109" r_stop="313" r_length="205" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="77714" i_stop="77608" i_length="107">
            <donor d_prob="0.993" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="77607" g_stop="77523" g_length="85"/>
          <reference_exon_boundary r_type="cDNA" r_start="314" r_stop="398" r_length="85" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="77522" i_stop="77436" i_length="87">
            <donor d_prob="0.878" d_score="1.00"/>
            <acceptor a_prob="0.969" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="77435" g_stop="77368" g_length="68"/>
          <reference_exon_boundary r_type="cDNA" r_start="399" r_stop="466" r_length="68" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="77367" i_stop="75715" i_length="1653">
            <donor d_prob="0.987" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="75714" g_stop="75672" g_length="43"/>
          <reference_exon_boundary r_type="cDNA" r_start="467" r_stop="509" r_length="43" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLe0010E18.1" gen_strand="-" ref_id="SGN-E324042" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>509</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0010E18.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E324042" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="78124" e_stop="78017"/>
          <exon e_start="77919" e_stop="77715"/>
          <exon e_start="77607" e_stop="77523"/>
          <exon e_start="77435" e_stop="77368"/>
          <exon e_start="75714" e_stop="75672"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGAAACATAAATGGTGGTGTCGGGCAAATTCACTCTGCCCAACAGTGCTTCTTCTTAGCTTGAATCATTTTCTTGACCCGTATAAACAGAGAGAAGAGTCCAATTGAGGTATGTTAAAGATTAGTTTTTTTCGTTTTCTTTCTTCCCCAATTTATGATTCTGTTTTCAATCTTACTACCTGTACTAATAACCACGTTGTTTTTAGGTCAATGTTGCATGCAGTATATGCCCCAAAAAGTTGCAGTATATCGTATTCAAGAATCCCTTGTTATCAAAAGCCTTTAGCCCCAACAAGGCTTAGAGTATCAGCTTCACTTCCAGAGCCTAATGGGGTTAAGGTTGAGTTCACTCCTTGGTTAATTGTTGGATTGGGAAATCCTGGAAACAAGTATCACGGAACTCGACACAATGTAATTTCCCCCCTTTTTCGAAGTTCAATTTTGTGTGTATATGTATTTGCGTGGTGTTTTGAATAATGCATTTTGCTGTTTCTTGATTATGGGGTTTTGTTAATTAGGTTGGTTTCGAGATGATTGATAGAGTTTCTCAAGAGGAGGGTATCGTGTTAAACACAATACAGTCGAAGGCCTTGATAGGGATAGGTGGTTATTCGATTCTGTTTGTTGTAATTTTTGTTCTCCTTACGAATGTTGAGCTTTGACGGGTTCTTTGTGATGGGCTTGGTGCAGGTTCCATTGGGGAGGTACCTGTTGTATTGGCAAAGCCTCAGGCCTACATGAATTTCAGTGGAGAAGCAGTATGTATTCAGCAGCTATTGATGTTTAGTATTTTAGTGTTATAACCCATTAATTAGTTATTCAAAGTGTAGTATTGAGTACCTAATGACCATAAGGACAACATTAAACGCTTTTCTATCATTGGTTTACACATGTTTCTTCCATTTCGATTTACATGGATAGTTGCTATGATCAGCTGTTGTGTTTACTTCACAATGAAAGAGGCTACTTTTGGTTTAGACTGTCCCTTGTGATAACCTGCGTAACAACCTTGTCACCTTTGATTTTGGATCAAAGCTTTTATCCTGCCTCGCATATAAATGTTCTTTCAGCATAGTGGAACTCCACTCAGTGGACTTGTTATCTCTTATTAAATCAGCTTCTACTTGCAATGAACACACACATTGCCTAGTATGCTTGAGCATCTTCTGCTTAGAAAGAGTTGAAACATGTTAGGTTCTTTTATCAACTCTCTGATTGCCCTAACATTAAAGGCTTGGTGGATGTGGACCAACACTTCAAGTTAACCAGAGGCCATCTGCAGCACAGTGACCCTTTGCATAGAAACTTGCCTTCTAATTTTTCTGGAACTGATACCAAAGTTCACAGTTTTAGCCCTCCTATCAGGTAGCAAATGTTATACAGACATCGTTTTTGATTTCCATTTTACTATATTTTGATCAGACCGACTGGTTCTTTGAAATATTGTAATTAGAATGAAAAAGAAAAGCTCTTTCACTGATACTTCTACTTCCTAAATGTTACTATTCCACAACTAGCTAAACCGCAGGGATTTTAAAGCAATTATGTTCTACTTACTTTCTCTTGAACTGTTTATCTGTTCTGGTGTTTCGTGTTTCACATATGTAATTGACTAGGGTGAGATGGTGTGTAGTTTGCTTCAATATTTTTGAAGAAGGTTTCCAATCATAAAAAAATTCAATATTCTGCAATAATGTTTTTCAACCAAACACCAAAAAAGAGAAGTTCTTCTGTTTTTTTTTTTTAAATGATAGCTTTTCAACGCTACTCAAAAGTGGTTTTTCAGTTTTGATAAACGATGAACTTCTTTTTCTTGGTGTTAGTTGAAAACAATATTTGGAAAAAGGAAAATGAAAAGAATTTCCAAAGCAAGTTTTCAAGCCTTAATAGAACTTTTGAGACCTTATTTTTCCTGTGGGTTTGTCATTATATTTAGAAGATTTCTATCTTTTGATAAAGGTCATTTCTTTAGAAGTTAGCAAAGTTGGATATAGTTATTTCCTCTGGTTGGCTAAGTAACTAAGATAAAACATGATTGAGAGAAATCATGCTGCTAATGGTTCATTACAGTTAGTGGATATGTGATATAATAGATACTTTAATCTGGTAAAAGCTTGATCTGGTTGTTCCTTAGTATGTCATCTGAAAGGTGCTTCCTGTATAAATCCTTTAGCTCTTGTGTTCTATTTCCCATGTTGGTTCTGTCATTAAATGTGTAGTTTTCATGATGTTGCATCTTTTATAGTTCTTGCTTTTATTAACAAAAGTAACAAAGCGCTTCTTTCTTCTCTCTATCCTTTTCCCTGATCATTCTCGTTTCCATTTTTGGGTGATATTTATTTTTTGGGAGCGGAGGGCTCTTTATTCTTCTTTGGTTAATATGGACCTAATCCAAATGTTTTTTATACTAGGTTGGACCGCTTGCAGCATATTATCAGGTGCCAATGCGTCACA</genome_strand>
        <mrna_strand>AGAAACATAAATGGTGGTGTCGGGCAAATTCACTCTGCCCAACAGTGCTTCTTCTTAGCTTGAATCATTTTCTTGACCCGTATAAACAGAGAGAAGAGTCCAATTGAG.................................................................................................GTCAATGTTGCATGCAGTATATGCCCCAAAAAGTTGCAGTATATCGTATTCAAGAATCCCTTGTTATCAAAAGCCTTTAGCCCCAACAAGGCTTAGAGTATCAGCTTCACTTCCAGAGCCTAATGGGGTTAAGGTTGAGTTCACTCCTTGGTTAATTGTTGGATTGGGAAATCCTGGAAACAAGTATCACGGAACTCGACACAAT...........................................................................................................GTTGGTTTCGAGATGATTGATAGAGTTTCTCAAGAGGAGGGTATCGTGTTAAACACAATACAGTCGAAGGCCTTGATAGGGATAG.......................................................................................GTTCCATTGGGGAGGTACCTGTTGTATTGGCAAAGCCTCAGGCCTACATGAATTTCAGTGGAGAAGCA.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTGGACCGCTTGCAGCATATTATCAGGTGCCAATGCGTCACA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0010E18-vqLN4/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E323844" ref_strand="+" ref_description="SGN-E323844 [cTOC-5-J23]">
      <seq>aacattaaacgcttttctatgattggtttacacatgtttcttccatttcgatttacatggatagttgctatgatcagctgttgtgtttacttcacaatgaaagaggctacttttggtttagactgtcccttgtgataacctgcgtaacaaccttgtcacctttgattttggatcaaagcttttatcctgcctcgcatataaatgttctttcagcatagtggaactccactcagtggacttgttatctcttattaaatcagcttctacttgcaatgaacacacacatt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0010E18-vqLN4/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02SLe0010E18.1" temp_strand="-" temp_description="C02SLe0010E18.1  AC215443.1 htgs_phase:3 submitted_to_sgn_as:C02SLe0010E18 sequenced_by:kribb upload_account_name:korea">
        <position start="77568" stop="76682"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="77268" g_stop="76982" g_length="287"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="287" r_length="287" r_score="0.997"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLe0010E18.1" gen_strand="-" ref_id="SGN-E323844" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>287</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0010E18.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E323844" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="77268" e_stop="76982"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AACATTAAACGCTTTTCTATCATTGGTTTACACATGTTTCTTCCATTTCGATTTACATGGATAGTTGCTATGATCAGCTGTTGTGTTTACTTCACAATGAAAGAGGCTACTTTTGGTTTAGACTGTCCCTTGTGATAACCTGCGTAACAACCTTGTCACCTTTGATTTTGGATCAAAGCTTTTATCCTGCCTCGCATATAAATGTTCTTTCAGCATAGTGGAACTCCACTCAGTGGACTTGTTATCTCTTATTAAATCAGCTTCTACTTGCAATGAACACACACATT</genome_strand>
        <mrna_strand>AACATTAAACGCTTTTCTATGATTGGTTTACACATGTTTCTTCCATTTCGATTTACATGGATAGTTGCTATGATCAGCTGTTGTGTTTACTTCACAATGAAAGAGGCTACTTTTGGTTTAGACTGTCCCTTGTGATAACCTGCGTAACAACCTTGTCACCTTTGATTTTGGATCAAAGCTTTTATCCTGCCTCGCATATAAATGTTCTTTCAGCATAGTGGAACTCCACTCAGTGGACTTGTTATCTCTTATTAAATCAGCTTCTACTTGCAATGAACACACACATT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0010E18-vqLN4/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E275272" ref_strand="+" ref_description="SGN-E275272 [cLEN-9-B23]">
      <seq>ttaattgttggattgggaaatcctggaaacaagtatcacggaactcgacacaatgttggtttcgagatgattgatagagtttctcaagaggagggtatcgtgttaaacacaatacagtcgaaggccttgatagggataggttccattggggaggtacctgttgtattggcaaagcctcaggcctacatgaatttcagtggagaagcagtatgtattcagcagctattgatgtttagtattttagtgttataacccattaattagttattcaaagtgtagtattgagtacctaatgaccataaggacaacattaaacgcttttctatcattggtttacacatgtttcttccatttcgatttacatggatagttgctatgatcagctgttgtgtttacttcacaatgaaagaggctacttttggtttagactgtcccttgtgataacctgcgtaacaaccttgtcacctttgattttggatcaaagcttttatcctgcctcgcatataaatgttctttcagcatagtggaac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0010E18-vqLN4/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02SLe0010E18.1" temp_strand="-" temp_description="C02SLe0010E18.1  AC215443.1 htgs_phase:3 submitted_to_sgn_as:C02SLe0010E18 sequenced_by:kribb upload_account_name:korea">
        <position start="78068" stop="76745"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="77768" g_stop="77715" g_length="54"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="54" r_length="54" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="77714" i_stop="77608" i_length="107">
            <donor d_prob="0.993" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="77607" g_stop="77523" g_length="85"/>
          <reference_exon_boundary r_type="cDNA" r_start="55" r_stop="139" r_length="85" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="77522" i_stop="77436" i_length="87">
            <donor d_prob="0.878" d_score="1.00"/>
            <acceptor a_prob="0.969" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="77435" g_stop="77045" g_length="391"/>
          <reference_exon_boundary r_type="cDNA" r_start="140" r_stop="530" r_length="391" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLe0010E18.1" gen_strand="-" ref_id="SGN-E275272" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>530</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0010E18.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E275272" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="77768" e_stop="77715"/>
          <exon e_start="77607" e_stop="77523"/>
          <exon e_start="77435" e_stop="77045"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTAATTGTTGGATTGGGAAATCCTGGAAACAAGTATCACGGAACTCGACACAATGTAATTTCCCCCCTTTTTCGAAGTTCAATTTTGTGTGTATATGTATTTGCGTGGTGTTTTGAATAATGCATTTTGCTGTTTCTTGATTATGGGGTTTTGTTAATTAGGTTGGTTTCGAGATGATTGATAGAGTTTCTCAAGAGGAGGGTATCGTGTTAAACACAATACAGTCGAAGGCCTTGATAGGGATAGGTGGTTATTCGATTCTGTTTGTTGTAATTTTTGTTCTCCTTACGAATGTTGAGCTTTGACGGGTTCTTTGTGATGGGCTTGGTGCAGGTTCCATTGGGGAGGTACCTGTTGTATTGGCAAAGCCTCAGGCCTACATGAATTTCAGTGGAGAAGCAGTATGTATTCAGCAGCTATTGATGTTTAGTATTTTAGTGTTATAACCCATTAATTAGTTATTCAAAGTGTAGTATTGAGTACCTAATGACCATAAGGACAACATTAAACGCTTTTCTATCATTGGTTTACACATGTTTCTTCCATTTCGATTTACATGGATAGTTGCTATGATCAGCTGTTGTGTTTACTTCACAATGAAAGAGGCTACTTTTGGTTTAGACTGTCCCTTGTGATAACCTGCGTAACAACCTTGTCACCTTTGATTTTGGATCAAAGCTTTTATCCTGCCTCGCATATAAATGTTCTTTCAGCATAGTGGAAC</genome_strand>
        <mrna_strand>TTAATTGTTGGATTGGGAAATCCTGGAAACAAGTATCACGGAACTCGACACAAT...........................................................................................................GTTGGTTTCGAGATGATTGATAGAGTTTCTCAAGAGGAGGGTATCGTGTTAAACACAATACAGTCGAAGGCCTTGATAGGGATAG.......................................................................................GTTCCATTGGGGAGGTACCTGTTGTATTGGCAAAGCCTCAGGCCTACATGAATTTCAGTGGAGAAGCAGTATGTATTCAGCAGCTATTGATGTTTAGTATTTTAGTGTTATAACCCATTAATTAGTTATTCAAAGTGTAGTATTGAGTACCTAATGACCATAAGGACAACATTAAACGCTTTTCTATCATTGGTTTACACATGTTTCTTCCATTTCGATTTACATGGATAGTTGCTATGATCAGCTGTTGTGTTTACTTCACAATGAAAGAGGCTACTTTTGGTTTAGACTGTCCCTTGTGATAACCTGCGTAACAACCTTGTCACCTTTGATTTTGGATCAAAGCTTTTATCCTGCCTCGCATATAAATGTTCTTTCAGCATAGTGGAAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0010E18-vqLN4/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E746989" ref_strand="+" ref_description="SGN-E746989 [GI|47104293]">
      <seq>ctctcttcgaattcatcgaacctcccaatgcaaattctgctgtaattttacgataaagcaacaaagaagaacattcatcgaagaggatacagttagcaaactctataatctctcaccttcaacactctactttgcataatttcactgtaagcataaaaggctttcaaaatgcaagcttcaactttcacagtcaaaggcaacacagcatttggccttcaaaatcgaaggattttgcaaggggtgagtgatttgcgtagtatgactttagctggtaaaagtctccggatgacgggcagttgcatcggagcaagtatggattctgcttcaatgggaatcgaacttggtcgtgctaggaggactgttcaaagtgtcttcggttcgtccgcaaaggccagatcacacagaattcgagctgctggagaggatattgaggatgcagcacctctcaaagttcaaggccaatcatctggatcagtacttccctatgtgggtgtagcttgtctggcagcaattttatttggatatcacctaggggtggtgaatggtgcccttgagtacctagctaaggatcttgggattgccgagaacactgttatacaaggatggattgttagcacagttcttgctggcgcctttgttggttcatttactggtggagctctggctgataaatttggccgaacaaagacatttatattggatgcaattccactttcagttggtgcgtttctatgtaccactgcccagagtgttcaggctatgatcattggacgcttacttactggaattggcattggcatctcatctgctattgtgccactttacatatctgagatctcacccacggaaattcgcggcacactgggaacggtcaatcagctattcatttgcattggaattcttgttgcactagtggctggattgcctttgtctggaaatccttcatggtggagaacaatgtttggtctcgcacttattccatctgttttacttgcaataggaatggtattttctcctgaaagtcctcggtggctctatcagcaagggagaatttctgaagctgagacatctattaaaaggctatatggtaaagaaaaagttgctcaggttatgggtgatttggaagcttctgcccagggttcttcagaaccagacgctgggtggcttgatctatttagtagccgttataggaaagttgttagcattggtgcagctatgttctttttgcagcagttggctgggataaatgctgttgtctattattccactgccgtgttccgaagtgctggaattacatctgatgtagcagccagtgctctggttggagcagccaacgtctttgggacaacggtggcatcctctttgatggacaaacaaggaaggaagagtctcttgctcataagctatactggaatggctgcatcaatgatgttgctttccttgtcattcacttggaaggtcctgactccatattctggcacactggctgttcttggtactgtcctctatgtgttgtccttttcacttggtgctggtcctgtgcctgctcttctacttccagaaatatttgcttccagaattagggcaaaagcggtggctctctctttgggggtacattggataatgaacttctttattggcctgtacttcttgagcattgtaactaaatttggtatcagtacggtgtacatgggatttgcactctcttgtcttgttgctgtcgtatatataactggtaacgtcgtggagacaaaggggcggtcactggaggagatagaacgtgagttaagtccagcaatttgagtggtaccacatgaacagctgagagtaatttcagcttccgccttccagtgggtctggattttgaagagattctccacattgggggtcctgactggagttgtatcacttaccctttagctatctctttgattttctggtacaccggcttcatgaatcatgggacattgtaaaaaacatgtaactgttataattgagtatttcggaactgttaattattgtggactgcagttaaatcgtaggtgtgcaagatgataatatatgtaaatcatgtatttatcaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0010E18-vqLN4/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02SLe0010E18.1" temp_strand="+" temp_description="C02SLe0010E18.1  AC215443.1 htgs_phase:3 submitted_to_sgn_as:C02SLe0010E18 sequenced_by:kribb upload_account_name:korea">
        <position start="82143" stop="96583"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="82443" g_stop="82587" g_length="145"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="145" r_length="145" r_score="0.979"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="82588" i_stop="82877" i_length="290">
            <donor d_prob="0.879" d_score="0.94"/>
            <acceptor a_prob="0.996" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="82878" g_stop="83152" g_length="275"/>
          <reference_exon_boundary r_type="cDNA" r_start="146" r_stop="418" r_length="273" r_score="0.960"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="83153" i_stop="84158" i_length="1006">
            <donor d_prob="0.982" d_score="0.96"/>
            <acceptor a_prob="0.718" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="84159" g_stop="84273" g_length="115"/>
          <reference_exon_boundary r_type="cDNA" r_start="419" r_stop="533" r_length="115" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="84274" i_stop="85981" i_length="1708">
            <donor d_prob="0.301" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="85982" g_stop="86049" g_length="68"/>
          <reference_exon_boundary r_type="cDNA" r_start="534" r_stop="601" r_length="68" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="86050" i_stop="86309" i_length="260">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.878" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="86310" g_stop="86442" g_length="133"/>
          <reference_exon_boundary r_type="cDNA" r_start="602" r_stop="734" r_length="133" r_score="0.992"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="86443" i_stop="86525" i_length="83">
            <donor d_prob="0.858" d_score="1.00"/>
            <acceptor a_prob="0.397" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="86526" g_stop="86625" g_length="100"/>
          <reference_exon_boundary r_type="cDNA" r_start="735" r_stop="834" r_length="100" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="86626" i_stop="86722" i_length="97">
            <donor d_prob="0.980" d_score="1.00"/>
            <acceptor a_prob="0.091" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="86723" g_stop="86835" g_length="113"/>
          <reference_exon_boundary r_type="cDNA" r_start="835" r_stop="947" r_length="113" r_score="1.000"/>
        </exon>
        <intron i_serial="7">
          <gDNA_intron_boundary i_start="86836" i_stop="88069" i_length="1234">
            <donor d_prob="0.959" d_score="1.00"/>
            <acceptor a_prob="0.977" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="8">
          <gDNA_exon_boundary g_start="88070" g_stop="88163" g_length="94"/>
          <reference_exon_boundary r_type="cDNA" r_start="948" r_stop="1041" r_length="94" r_score="0.989"/>
        </exon>
        <intron i_serial="8">
          <gDNA_intron_boundary i_start="88164" i_stop="88278" i_length="115">
            <donor d_prob="0.923" d_score="0.98"/>
            <acceptor a_prob="0.906" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="9">
          <gDNA_exon_boundary g_start="88279" g_stop="88432" g_length="154"/>
          <reference_exon_boundary r_type="cDNA" r_start="1042" r_stop="1195" r_length="154" r_score="0.981"/>
        </exon>
        <intron i_serial="9">
          <gDNA_intron_boundary i_start="88433" i_stop="89308" i_length="876">
            <donor d_prob="0.994" d_score="0.98"/>
            <acceptor a_prob="0.989" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="10">
          <gDNA_exon_boundary g_start="89309" g_stop="89455" g_length="147"/>
          <reference_exon_boundary r_type="cDNA" r_start="1196" r_stop="1342" r_length="147" r_score="0.986"/>
        </exon>
        <intron i_serial="10">
          <gDNA_intron_boundary i_start="89456" i_stop="89534" i_length="79">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="11">
          <gDNA_exon_boundary g_start="89535" g_stop="89608" g_length="74"/>
          <reference_exon_boundary r_type="cDNA" r_start="1343" r_stop="1416" r_length="74" r_score="1.000"/>
        </exon>
        <intron i_serial="11">
          <gDNA_intron_boundary i_start="89609" i_stop="90609" i_length="1001">
            <donor d_prob="0.986" d_score="1.00"/>
            <acceptor a_prob="0.987" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="12">
          <gDNA_exon_boundary g_start="90610" g_stop="90698" g_length="89"/>
          <reference_exon_boundary r_type="cDNA" r_start="1417" r_stop="1505" r_length="89" r_score="1.000"/>
        </exon>
        <intron i_serial="12">
          <gDNA_intron_boundary i_start="90699" i_stop="90868" i_length="170">
            <donor d_prob="0.991" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="13">
          <gDNA_exon_boundary g_start="90869" g_stop="90983" g_length="115"/>
          <reference_exon_boundary r_type="cDNA" r_start="1506" r_stop="1620" r_length="115" r_score="0.991"/>
        </exon>
        <intron i_serial="13">
          <gDNA_intron_boundary i_start="90984" i_stop="91477" i_length="494">
            <donor d_prob="0.140" d_score="0.98"/>
            <acceptor a_prob="0.664" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="14">
          <gDNA_exon_boundary g_start="91478" g_stop="91939" g_length="462"/>
          <reference_exon_boundary r_type="cDNA" r_start="1621" r_stop="2062" r_length="442" r_score="0.879"/>
        </exon>
        <intron i_serial="14">
          <gDNA_intron_boundary i_start="91940" i_stop="91989" i_length="50">
            <donor d_prob="0.097" d_score="0.88"/>
            <acceptor a_prob="0.933" a_score="0.00"/>
          </gDNA_intron_boundary>
          <shorter_than_min_intron_len/>
        </intron>
        <exon e_serial="15">
          <gDNA_exon_boundary g_start="91990" g_stop="92004" g_length="15"/>
          <reference_exon_boundary r_type="cDNA" r_start="2063" r_stop="2077" r_length="15" r_score="0.733"/>
        </exon>
        <intron i_serial="15">
          <gDNA_intron_boundary i_start="92005" i_stop="92379" i_length="375">
            <donor d_prob="0.000" d_score="0.00"/>
            <acceptor a_prob="0.000" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="16">
          <gDNA_exon_boundary g_start="92380" g_stop="92401" g_length="22"/>
          <reference_exon_boundary r_type="cDNA" r_start="2078" r_stop="2099" r_length="22" r_score="0.773"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLe0010E18.1" gen_strand="+" ref_id="SGN-E746989" ref_strand="+">
        <total_alignment_score>0.963</total_alignment_score>
        <cumulative_length_of_scored_exons>2121</cumulative_length_of_scored_exons>
        <coverage percentage="1.010" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0010E18.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E746989" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="82443" e_stop="82587"/>
          <exon e_start="82878" e_stop="83152"/>
          <exon e_start="84159" e_stop="84273"/>
          <exon e_start="85982" e_stop="86049"/>
          <exon e_start="86310" e_stop="86442"/>
          <exon e_start="86526" e_stop="86625"/>
          <exon e_start="86723" e_stop="86835"/>
          <exon e_start="88070" e_stop="88163"/>
          <exon e_start="88279" e_stop="88432"/>
          <exon e_start="89309" e_stop="89455"/>
          <exon e_start="89535" e_stop="89608"/>
          <exon e_start="90610" e_stop="90698"/>
          <exon e_start="90869" e_stop="90983"/>
          <exon e_start="91478" e_stop="91939"/>
          <exon e_start="91990" e_stop="92004"/>
          <exon e_start="92380" e_stop="92401"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTCTCTTCGAATTCATCGAACCTCCCAATGCAAATTCTGCTGTAATTTTACGATAAAGCAACAAAGAAGAACATTCATCGAAGAGGATACAGTTAGC-AACTCTATAATCTCTCACCTTCAACACTCTACTTTGCATAATTTCACTGTATTTATTCCACTTCTTGATTTGATTTTTTTTCCCATCATTTTCAATCTCGTTGCGATTTTGTTTGATTTCTTCATATAATCAGCTCTTTGGAATGCGAATTGAGACCTATTTTGCTTCAAATCTGTTGTTGACTTCCGATTTATGTCGAACTGTAGTGTGGATGATGAAATGAGACGGTGTTTCGATGATAGAGTAGTGTAGAGTGTGGGCGTTTTGTGTATTGCTTTATTTATTACTACTTTTTTTATGTTGTTGACTTTTCCGTTATATGTACCTTTTTTTCATAGGTGCTTAGCATAAAAGGCTTTCAAAATGCAAGCTTCAACTTTCACAGTCAAAGGCAACACAGCATTTGGCCTTCAAAATCGAAGGATTTTGCAAGGGGTTAGTGATTTGCGTAGTAGGACTTTAGCTGGTAAAAGTCTTCGGATGACGGGCAGTTGCTTCGGAGTAAGTATGGATTCTGCTTCAATGGGAATCGAACTTGGCCGTGCTAGGAGGACTGTTCAAAGTGTCTTCGGTTCGTCCGCGAAGGCCAGATCACACAGAGTTCGAGCTGCTGGTACATGTTTATATACTGATTCAACTTTATAGCTTGATACAGAGGATTTATATATAGAGAGAGGTATATTTTGTTGATTGTTTTGGGGGTGTGTAATTCCGAATTTCCTTATGCCGTGATAAAAATCTGTTTGGTATTGTTTTTAGAGTATGCACCTGTTTAGAGAGATGTAATTTTCTTCCTTAATGAGTTTAGGGTTAAGTTTAATCTTGTCTCAGTATATTGACTGTAGGATTCACTCTATTGGATTACAATGTGAGGAAATTCATTACTGTCTTCATTACAGATATTTTTGTGGTACTGTTCCACGCTGGTTTGGTTTCTGCTTTTGCATGCGAAGGAGTATTAAAATTCTGCTATTGTGCTAACATAAGGTGGCTAAAAACTGTTAACTGGTAGTCTGGAATTTCTGGTTCCCTTTTGTCTACTATGACAGTATATCACCACATTTGTGATTTGGTAAAGGGTAAAGGAAGGGGAGACTAGAAGTGGATAATAGTTGGGTGCGAAGTTGCTTTGGTACTGCACAACTGGCATGGGGGTATGGTTAGTTGTAATTTGGTGAGAATGGTCACTTAGGAATTGGACTGCATGCAGGTTCCAAGTGAGAAAGGACACATCCGGTGGATGGACATAGTGCTTGGACAATAGTAAAAGATTATTAACTTTTCTCATATGGGTGGGAACCAAGTGAAAAGTCTTTCTTTTTCTCTCTTACCTTTCTTAGTTCTGGATCTCATTTCCAGAAAAAACATGAACCTAAACTTCTCCTTTTCACCTGAGCTTTCTGTTCGAGTAGATAAATCTTAGATTTTATTTTTAAAAAAAGAACATTTTTCATTGTTTTGTCATGTGGATTAAGCATCAGCCGAGTATGTTGTTCAAAGAATACTATTGAAACTTAAATAAGCTGCAACTTGACTGCCTCTCTTTGGATAGGATAACAACAAAGGTCCTGCATGATGCATGAAACTTACTAACAAGGGCGTCTATTGTTGCGTGGCAGGAGAGGATATTGAGGATGCAGCACCTCTCAAAGTTCAAGGCCAATCATCTGGATCAGTACTTCCCTATGTGGGTGTAGCTTGTCTGGCAGCAATTTTATTTGGATATCACCTAGGGTATGACATTATATGATTGAAGAACATTCATTTACTGGTATTTTATCTTACATATGTTATCATAATTGCCTGAGTCTAAGGGGGGTGGGTATTCAGTTCTTCAGTTAGGTTTTTCGGTTTTTTAATAGTGTAAACCGAAATACTGAACCAAACTACTTTGGTTTGGTTCGGTTCAATTCAATTTTTAAAATTTGTTTTTTTGGGTATTTATGAAGAATGTCAACAATAAGAAACAATAAATATATCTCGCGAATAAATTAGAAAAATGTCAACTATGTCGTCCCAACGCAAAGACAACTAATGTAGGCTTGTTTGATTTATATAGATATAAAGCCACATCATTAATTTTCTAAAAAATTAATTTATGAATGTTTTCATAGTTTCGTCCGTAACATAATTAGATATCTTCTTTTTGATCCAAAATGAAGCCAGTGATTTCTATCCACACTATGTTCAGTAAATCTTAAAATTAATGAAATAAAATACACAAAAAATAATTGTCTATTTTGGTTATTGTCAAGAGGAGTAGTAACTTATCAAGTCCCCTTCAGCTAATTTGCAAAAATATGCTCTTCATCCTTACTTTGTTCATCAGCTTGGGGCAGAGGAACACTGAAGTGACTTGCAAAATGACTTTGAGAGCGATCATTCAACCAGCTGAACTGGAAAGTGGTTGAATCGGTGAATGTGCATGTATATAAACAAAACAAAAGAGAAGTCTTTTGGTTTAGTCATTTTCTTCTTTTTATTTGAGAAACCAAATAAAAGCAAATTATAAAAAAATTAACTTATATTATTAAACTTTGGTTCTTCGGAGCACCGAAATACTGAATCCTAAAACAGAGAACCAAACCAAAAGAACTGAAGAACCGAATCACTTTTGTTCGGTTTTTGGTAATTATGCCCACCTCATCGTGTCTCTCCATCAACATGTTTATGCATTTCATAGGTATGTCCACAGGTTTATTCTGTTTTACAGACTAGTTGGAATTAGACTATTAATGCTGGTTTGGACCCAAACCTTAACCAATGAAAGTGCAATCATAGTATTTGCTTAGTTGGTCCTGGTTGCCAGCTCAACTGTTTGATTGGATAAGCTAAATATTTGTTGATTCTATATTTTGTTTTCTCATGAATGAAACTCAAAGTTTTGTTTGTAGTTTGCATTCCCTATCAATTTTCTGAATTTTCTTCTCACCAAGAACTGAAGTTTGTTTTATATAAATAAGAAATTGGGCCTAAAAAGAGAGGCAAACAACTTTCAGAACTTTAAAGTAGGCCCTGATACCTTTTTAATAACAACTTACTGAAAATATGGCGAAGTTGAATGATAAAAGTTGCTTCTTAATAAAGTTGACATAACTCTTGGAGAATCCACCGAAAGCGGAATGTGACAGTTCACAGTTATTATGGGTTAGGGGAGTGTTTCTACCACCATACTTTAGAAAGTGAATAATAGATGAATTAGTTCAGTTTTGGTTACCTGTCTGCTCAATCTTTGGGTCAGACTGGACCAAACATTTCTTTATTTTGAAACTGGTAACAAACTAGACCAAACATTTCTTGTTCAGGCATTTTCTAAATTCTAAGCCATAAGCATTTTTAGTTCAGGTACATAAACATTCCAAGCCCTGCAGTTTATCCATGTAACCCTCTGTTTTATATTGTGCTATTAAGTTCCATGATAACCGTCATTTTTCTGGTTCAGGGTGGTGAATGGTGCCCTTGAGTACCTAGCTAAGGATCTTGGGATTGCCGAGAACACTGTTATACAAGGCAAGTTTTATTGGATGGTTTTTTATGTGAAATATAGCTTTAATTGATTACTATCCTATTTTTCTGGTTTCTGAGCTGCTGGAGAAAGGGTCAGCTTTTTATGAAGCCTTTGCTCTGTCACAGAGTTGATGTTTTGGCTATGTTGGGTTAAAAGATCTTTTGGAAGCCTTGTTCAGATGTCCTATTTCTTACAGTTCACTTCCTTTGGTTAATTATCTAGATATAGGTGGACCAATCTTTTATTTGATTTCTTTTGTTAGGATGGATTGTTAGCACAGTTCTTGCTGGTGCCTTTGTTGGTTCATTTACTGGTGGAGCTCTGGCTGATAAATTTGGCCGAACAAAGACATTTATATTGGATGCAATTCCACTTTCAGTTGGTGCGTTTCTATGGTATGTACCTTACCATAGTCAGAGATACAATATCAGGTCAATACCATTGATACAAGCATCTAATATGATGTCAAAACTTTCAGTACCACTGCCCAGAGTGTTCAGGCTATGATCATTGGACGCTTACTTACTGGAATTGGCATTGGCATCTCATCTGCTATTGTGCCACTTTACATATCTGAGGTGTATATCTCACTCAAAGTTACATCACCTTTTTAGACAGTATTCAAAGGTTGTACTTTCGTGTTTCATAGCATCCTAACAAACTTTCGGTGCTTAGATCTCACCCACGGAAATTCGCGGCACACTGGGAACGGTCAATCAGCTATTCATTTGCATTGGAATTCTTGTTGCACTAGTGGCTGGATTGCCTTTGTCTGGAAATCCTTCATGGTAATTTCTCATTACGTATGCTCATAGCAGAAAACAATTTAGAGTTTTGTAACTTTTAAATGATTGGTACATGATTTTATCCGAAGGCCTTTCAAAAGATTTTGGCAAAAGAAGATTCCAACAAGATGTCATGAATGGTTTTATCTAGACCTGATTAGTCCAGAACCAATAGGGTACCCATTTGGTGGTCCTAACATAATTCTGGAGTAGTTTGAGATTAAAGTGGTGGTAGATGTCAGAATTTAGCACCTTGGTGCCTAATTCCCTAGTCTGCTTATTTTTTCGTTTTTTGTAGTACATGAATCTTCTATTAATAATTTACAACTTAAATACAATTATCACTTTAGTTGAATTACTGGTGTATTTCTCTAATTTCATACAGTGGTGAGGTGAGGTCAGTTAAGCTTAAGTTTATTTATTCGGTTCTTTGATGAAAGTTGTAGATGTCTTTGTTTGCCCTTATATAAGCTACCTGGCAGAGTTCAATTGTTTTAAAATTAATTAAGTACTCAGGTTTGCTTATTATCTATTTTCTTCAATCTTTAAAAGTTTTACATTGATTTTATGATTTTTTTTTCATCAGGGAATTTCATTGTGACTTGAGTTTGTTTGTCCTTGAGAAATAATTTGAAGTAAAATGATTAATGTTTAATTTCTATTAGGAGTGTTGTACTCCAGCTTTTGGGTTCTAAAGCAAATAGCAATACTCTGTTTCTGTAGTTTTGACATTTAGTATCCTTTTCAATGTCCCAGATGCCAAAACTGTTCATGCTTAGGGAATATTTTCTCTAATCAACCGTTTTGATTGTATTGGAAAGAACTATAGGGAATATTTTCTCTAATCAACTTTGTTTATGCTATTGGGAAGAATTAAAATCATGTTGTGTACCTTGACTTTTAACTTTTCTAATTGACGCCAGAGCAAGTGGGACCTCACAGGATTACCCCTTCATGTTATTTGATTTACTTATTTGCTTGTTTCTGGGTTTATTGCTTATTCTACTTCCATATCTCTCATCTGCCGTTTGAATGACTACTATGTCTTATTGGCATTTCTAGATGATACTTTTCCATCTAACTTGTTCACAAATGATTAAGGTACTACAACTAGTAGTTGCCAGACTTCAGAAACTCTAACGAGCATGGAATTTCCCAACCTTCGCAGTTTTCGTGTTAATGCTTAAATATTTGTGTTTAAATCCATTAAGTTACATGTCTCCATTTCATATGTCAGGTGGAGAACAATGTTTGGTCTCGCACTTATTCCATCTGTTTTACTTGCAATAGGAATGGTATTTTCTCCCGAAAGTCCTCGGTGGCTCTATCAGGTTTCTCATGAGATCTTTCTTTTCTAGTTTGAAATCTTCATTATGGATATCCTGTCTACAGCTACAATCTATGTCAGAGACTTTTTGTCTTAAACTATCCAATTCTATCTTGCAGCAAGGGAGAATATCTGAAGCTGAGACATCTATTAAAAGGCTATATGGTAAAGAAAAAGTTGCTGAGGTTATGGGTGATTTGGAAGCTTCTGCCCAGGGTTCTTCAGAACCAGATGCTGGGTGGCTTGATCTATTTAGTAGCCGTTATAGGAAAGGTATATCTTTGATCATCAGTATTCTAGATAATAAATATTGATGATGCATGTCTTATGCGTCTAAAGCTCAGTTCTTATATCCTTAGGTCCAACACTTCCCTATATATTGTTTAAGAACAAATTTAAATTTCTTTTCCTTTGGGTGTTATCATACGCCATCATTATTAGGAATTTCGGATAGTGGTGTGTAGTTTTGCTCTTGCTGCAATAAAGAAAATCATGTCAATTATTTTCCTTAAGTTCCAAAATCTTGATAATCACCAAAGCATAGAGTTTTGTCTGGTACGTGTTCCCATTTTACTTTTTAATCAACTTTGTTTGTTATTATTATTCTTTATTTTTTTATTGGTCCAAATACGTAGAACAATGAGAGATACTTTGAAGATAAGTTAAGTCCATTCATGATGTGAAATGGAATTGCATAGTTTCTCTATTTTTTGGTGTAAAGAGAATTGTATAGAGGAAGTAGATGATCTTATAGATTTTTAACGTATTGTAAATCTAGAGTCCATATCTTTCTGTAAAAAATTTTTGGAGCCAGGCCAGCATATCCTTAATGCTGAGGACAGCATACCCTTAATGTTGAGGATTATAATAGTACCAATTTCAAATAAATAAATAAATTTGTAACCTTCATAATTTTCCTGCTTGGAAGAGAACTGTTACTTACAATTTAATTTGCTCTACAAATAATAAAAGCCTGTCTGATTTTTGCTTGTGAGCACATATTTCTCTACTTGAGTGTTTTCTTAATATGCTATTATCAGTCTATGGTCACTCATTCCATCATTCCAAATATATGTGATATTTTGAGCTCCTGATATTTCTGTACCATGTTGTACAACCAAAATGGTCTAATTGTTGTCGTCATTGCAGTTGTTAGCATTGGTGCAGCTATGTTCTTTTTGCAGCAGTTGGCTGGGATAAATGCAGTTGTCTATTATTCCACTGCCGTGTTCCGAAGCGCTGGAATTACATCTGATGTAGCAGCCAGTGCTCTGGTTGGAGCAGCCAACGTCTTTGGTTAGTTTTCTCCTCAAGGTTTTTGGTAACATCTATGGCTATAGAATATATTTTACTAATTGTATACGTATTCATCCAGGGACAACGGTGGCATCCTCTTTGATGGACAAACAAGGAAGGAAGAGTCTCTTGCTCATAAGCTATACTGGAATGGTAAGTCATTTTTAGTCCTAGATGGAGTTTACTATGTCGAAGAAAATTTACAACTTGCAACTGAATTGAGGTTAATCCTTTGAGAAATATGTGATATTTTCACTTTTAGGTGATTAATTACACATATGTATTCTATTTGAAGGTTTTAGTAGGCATTTGGATGCACAAACACATGTATATGCATATGAAAAGACAGCAAAATATTCATGGGAAAAGAAACAAGCAAATATATGCTTGTTAAATGACCTTGTATTTCCAGAAATTCTATCTATCTCTAGCACTAGCAAGTAGCAAAGCCATATCCTGTTATAATGTGATGCAAATCATTTACGCAGTAGAGATTGAAAACCTAAACCTTGCCTAGAGCAATACCTTAAAATCACTTGCTTGAAGGTTAGCGTAGATGAATATTACAAAGGTTGATCACTTTCTATGTTAAAATTTTCCAAATGAAGTGATTTTCTGAGAATTTGTGAAACTTTCTGAAGAGTACTTTTGGAAAAAATTCCATTCAATAATTATTATTACAGAAGATCATTTCTGGAAAAGTTTAAGTATCTTTTATCATTTAGACAAGTTTCATTATGAAAAAATCAAATTAGGGAGTGTGTGTAATATCTAAACCAGATGTAATATCTAAACCAGAAGAGAAGTTAGTGGTATAAAGGTAAATTTGAAGGGAGTTCTTTGAAATATTCCCCAACTATAATCATCAAGCAGAGAGAATTCCAACATGAAGCTCTTTGGGATAGCTTGCCTGAGACTTTCACCATCTTATCCTAATTATCTTTGGCAGTTGAACTCATGCTCTTATGCATCCAGTTGCATCCAGTTGTCAATGCTTAGATGGTCCCTTAGCTGCAACCCAGGCATGCGTATGATGAGCCTGAGGGCACATTATGTGTTTATTGTCCTGATTTTTGGCTTGTTTCCGACTTGATATATTTTTAGCTTGTTCTATCCATTTTGTTTCCGATTCTCATCGTATTCTCTTTTCACAGGCTGCATCAATGATGTTGCTTTCCTTGTCATTCACTTGGAAGGTCCTGACTCCATATTCTGGCACACTGGCTGTTCTTGGTACTGTCCTGTAAGTATCACGTGCTTCCCTGCTGGTTGGATCGTTACTTCCTTTTTTCCACCGAAGCAATTTCTTCCGTTTAGGCCAGCTTCTTTTTCACCTATGTCAATGCAAATGATTTTTTTTTGTAACAAATTGAATGAAATATATATATTTTCTGGCTACGTTTTTGTCTGCAGCTATGTGTTGTCCTTTTCACTTGGTGCTGGTCCTGTGCCTGCTCTTCTACTTCCAGAAATATTTGCTTCCAGAATTAGGGCAAAAGCAGTGGCTCTCTCTTTGGGGGTACATTGGGTGAGTTTGCGCTTGGAAACCGTAGTACCCTTTTTGCTGCTAACTGTCTATGTTTCCTTGCTTTTTTTTTTTTTGGGTGGGGGTGGGGGGTGGGGGGTGGGGAAGGAATAAAAGGCTATAACTACATCATTTATGGCGTTCCATGATTAACTGGAAGCAAACTGTTATGCCAAATTCCTAAAATCGCAATAAGCTGAAATGTGTGCTGACAGAATATGCTCATATGTCTTTTGAGCATGTTTCTCAATGCCACGCCTCTTGGGTAACATGACATGTGAGGGTGCTCATATTGTTTACTTCTTTTGTTTGAGAAGTATTTTTTGCTTTTGATTGGTACTATGTTCCCGGCATGAGCTTTAGAAAGATAACTATGAAAAGGTAGGAATTGATTTATTGCCCTTCATTGTGGTGGTATTTGCAGCACTGTGAGATTAATTGAAGGCTCATTCACTCCATGTTTACTTTGTTTCTAACTCGTATTTCTCCTTGAACAGATAATGAACTTCTTTATTGGCCTGTACTTCTTGAGCATTGTAACTAAATTTGGTATCAGTACGGTGTACATGGGATTTGCACTCTCTTGTCTTGTTGCTGTCGTATATATAACTGGTAACGTCGTGGAGACAAAGGGGCGGTCACTGGAGGAGATAGAACGTGAGTTAAGTCCAGCAATTTGAGTGGTACCGCATGAACAGCTGAGAGTAATTTCAGCTTCCGCCTTCCAGTGGGTCTGGATTTTGAAGAGATTCT-C-C-----GGGTCCTGACTGGAGTTGTATCACTTA-CCTTCAGCTATCTCTTTGATTTTCTTACACACCGGCTTCATGAATCATGGGACATTGTAAAAACATGCAACTGTTATGGAAGATGATCCGCGTATAATTGAGTATTTCGGAACTCATCTTCAGCTGTTAATTATTATGGAATGCAGTTAAACCGTAGGTGTGCAAGATGATAATCATGTATTTATCACTTCCATCTACCCGTATGAATTGGTAATTAATTTTCGTAGCGTAAATCAGGAAATGCAATGATGGTAAAGATTCTATTTGCATCTGGTGTTAACGCCAAATCATCAATAAATATATAACTATCATTGAGAATTCATATATATAATAATTAATTAAATCACTTAACCGTAGTAAATTGATATTAGTACTACTTAACAAATACATTTACAAGTAAAAGGGTTATTTATCAGTAATTGGTTGGTTTGCTCTACACGCCTGAGCCCGAGACTTAGTATCTCCTCATAAGTAAAAGGGCAAGATAGAAGCATTCCATATTCAGATGCTGATATCTCTACATATTGGATTTCCTTTCCCATCTCTCCTTGGTGTCGAGCCTACAGTAGGTAGAGAAGTGCACGATTCATAAGAACATACGGTATGCAAAATCAAAATATCAGAAAGAAAGAAACATAA</genome_strand>
        <mrna_strand>CTCTCTTCGAATTCATCGAACCTCCCAATGCAAATTCTGCTGTAATTTTACGATAAAGCAACAAAGAAGAACATTCATCGAAGAGGATACAGTTAGCAAACTCTATAATCTCTCACCTTCAACACTCTACTTTGCATAATTTCAC-..................................................................................................................................................................................................................................................................................................-TG-TAAGCATAAAAGGCTTTCAAAATGCAAGCTTCAACTTTCACAGTCAAAGGCAACACAGCATTTGGCCTTCAAAATCGAAGGATTTTGCAAGGGGTGAGTGATTTGCGTAGTATGACTTTAGCTGGTAAAAGTCTCCGGATGACGGGCAGTTGCATCGGAGCAAGTATGGATTCTGCTTCAATGGGAATCGAACTTGGTCGTGCTAGGAGGACTGTTCAAAGTGTCTTCGGTTCGTCCGCAAAGGCCAGATCACACAGAATTCGAGCTGCTG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAGAGGATATTGAGGATGCAGCACCTCTCAAAGTTCAAGGCCAATCATCTGGATCAGTACTTCCCTATGTGGGTGTAGCTTGTCTGGCAGCAATTTTATTTGGATATCACCTAGG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGTGGTGAATGGTGCCCTTGAGTACCTAGCTAAGGATCTTGGGATTGCCGAGAACACTGTTATACAAG....................................................................................................................................................................................................................................................................GATGGATTGTTAGCACAGTTCTTGCTGGCGCCTTTGTTGGTTCATTTACTGGTGGAGCTCTGGCTGATAAATTTGGCCGAACAAAGACATTTATATTGGATGCAATTCCACTTTCAGTTGGTGCGTTTCTATG...................................................................................TACCACTGCCCAGAGTGTTCAGGCTATGATCATTGGACGCTTACTTACTGGAATTGGCATTGGCATCTCATCTGCTATTGTGCCACTTTACATATCTGAG.................................................................................................ATCTCACCCACGGAAATTCGCGGCACACTGGGAACGGTCAATCAGCTATTCATTTGCATTGGAATTCTTGTTGCACTAGTGGCTGGATTGCCTTTGTCTGGAAATCCTTCATG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGGAGAACAATGTTTGGTCTCGCACTTATTCCATCTGTTTTACTTGCAATAGGAATGGTATTTTCTCCTGAAAGTCCTCGGTGGCTCTATCAG...................................................................................................................CAAGGGAGAATTTCTGAAGCTGAGACATCTATTAAAAGGCTATATGGTAAAGAAAAAGTTGCTCAGGTTATGGGTGATTTGGAAGCTTCTGCCCAGGGTTCTTCAGAACCAGACGCTGGGTGGCTTGATCTATTTAGTAGCCGTTATAGGAAAG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTGTTAGCATTGGTGCAGCTATGTTCTTTTTGCAGCAGTTGGCTGGGATAAATGCTGTTGTCTATTATTCCACTGCCGTGTTCCGAAGTGCTGGAATTACATCTGATGTAGCAGCCAGTGCTCTGGTTGGAGCAGCCAACGTCTTTG...............................................................................GGACAACGGTGGCATCCTCTTTGATGGACAAACAAGGAAGGAAGAGTCTCTTGCTCATAAGCTATACTGGAATG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCTGCATCAATGATGTTGCTTTCCTTGTCATTCACTTGGAAGGTCCTGACTCCATATTCTGGCACACTGGCTGTTCTTGGTACTGTCCT..........................................................................................................................................................................CTATGTGTTGTCCTTTTCACTTGGTGCTGGTCCTGTGCCTGCTCTTCTACTTCCAGAAATATTTGCTTCCAGAATTAGGGCAAAAGCGGTGGCTCTCTCTTTGGGGGTACATTGG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATAATGAACTTCTTTATTGGCCTGTACTTCTTGAGCATTGTAACTAAATTTGGTATCAGTACGGTGTACATGGGATTTGCACTCTCTTGTCTTGTTGCTGTCGTATATATAACTGGTAACGTCGTGGAGACAAAGGGGCGGTCACTGGAGGAGATAGAACGTGAGTTAAGTCCAGCAATTTGAGTGGTACCACATGAACAGCTGAGAGTAATTTCAGCTTCCGCCTTCCAGTGGGTCTGGATTTTGAAGAGATTCTCCACATTGGGGGTCCTGACTGGAGTTGTATCACTTACCCTTTAGCTATCTCTTTGATTTTCTGGTACACCGGCTTCATGAATCATGGGACATTGTAAAAA-A--C-A-TG---T--AA-CTG-T-----TATAATTGAGTATTTCGG-----A-----A-CTGTTAATTATTGTGGACTGCAGTTAAATCGTAGGTGTGCAAGATGATAATATA..................................................TGTAAATCATGTATT.......................................................................................................................................................................................................................................................................................................................................................................................TATCAAAAAAAAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0010E18-vqLN4/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E549331" ref_strand="+" ref_description="SGN-E549331 [TUS-69-G23]">
      <seq>ctctcttcgaattcatcgaacctcccaatgcaaattctgctgtaattttacgataaagcaacaaagaagaacattcatcgaagaggatacagttagcaaactctataatctctcaccttcaacactctactttgcataatttcactgtaagcataaaaggctttcaaaatgcaagcttcaactttcacagtcaaaggcaacacagcatttggccttcaaaatcgaaggattttgcaaggggtgagtgatttgcgtagtatgactttagctggtaaaagtctccggatgacgggcagttgcatcggagcaagtatggattctgcttcaatgggaatcgaacttggtcgtgctaggaggactgttcaaagtgtcttcggttcgtccgcaaaggccagatcacacagaattcgagctgctggagaggatattgaggatgcagcacctctcaaagttcaaggccaatcatctggatcagtacttccctatgtgggtgtagcttgtctggcagcaattttatttggatatcacctaggggtggtgaatggtgcccttgagtacctagctaaggatcttgggattgccgagaacactgttatacaaggatggattgttagcacagttcttgctggcgcctttgttggttcatttactggtggagctctggctgataaatttggccgaacaagacatttatattggatgcaattccactttcagttggtgcgtttctatgtaccactgcccagagtggtcaggctatgatcattggacgcttacttactgga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0010E18-vqLN4/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02SLe0010E18.1" temp_strand="+" temp_description="C02SLe0010E18.1  AC215443.1 htgs_phase:3 submitted_to_sgn_as:C02SLe0010E18 sequenced_by:kribb upload_account_name:korea">
        <position start="82143" stop="86877"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="82443" g_stop="82587" g_length="145"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="145" r_length="145" r_score="0.979"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="82588" i_stop="82877" i_length="290">
            <donor d_prob="0.879" d_score="0.94"/>
            <acceptor a_prob="0.996" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="82878" g_stop="83152" g_length="275"/>
          <reference_exon_boundary r_type="cDNA" r_start="146" r_stop="418" r_length="273" r_score="0.960"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="83153" i_stop="84158" i_length="1006">
            <donor d_prob="0.982" d_score="0.96"/>
            <acceptor a_prob="0.718" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="84159" g_stop="84273" g_length="115"/>
          <reference_exon_boundary r_type="cDNA" r_start="419" r_stop="533" r_length="115" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="84274" i_stop="85981" i_length="1708">
            <donor d_prob="0.301" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="85982" g_stop="86049" g_length="68"/>
          <reference_exon_boundary r_type="cDNA" r_start="534" r_stop="601" r_length="68" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="86050" i_stop="86309" i_length="260">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.878" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="86310" g_stop="86442" g_length="133"/>
          <reference_exon_boundary r_type="cDNA" r_start="602" r_stop="733" r_length="132" r_score="0.985"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="86443" i_stop="86525" i_length="83">
            <donor d_prob="0.858" d_score="1.00"/>
            <acceptor a_prob="0.397" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="86526" g_stop="86577" g_length="52"/>
          <reference_exon_boundary r_type="cDNA" r_start="734" r_stop="785" r_length="52" r_score="0.981"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLe0010E18.1" gen_strand="+" ref_id="SGN-E549331" ref_strand="+">
        <total_alignment_score>0.978</total_alignment_score>
        <cumulative_length_of_scored_exons>788</cumulative_length_of_scored_exons>
        <coverage percentage="1.004" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0010E18.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E549331" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="82443" e_stop="82587"/>
          <exon e_start="82878" e_stop="83152"/>
          <exon e_start="84159" e_stop="84273"/>
          <exon e_start="85982" e_stop="86049"/>
          <exon e_start="86310" e_stop="86442"/>
          <exon e_start="86526" e_stop="86577"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTCTCTTCGAATTCATCGAACCTCCCAATGCAAATTCTGCTGTAATTTTACGATAAAGCAACAAAGAAGAACATTCATCGAAGAGGATACAGTTAGC-AACTCTATAATCTCTCACCTTCAACACTCTACTTTGCATAATTTCACTGTATTTATTCCACTTCTTGATTTGATTTTTTTTCCCATCATTTTCAATCTCGTTGCGATTTTGTTTGATTTCTTCATATAATCAGCTCTTTGGAATGCGAATTGAGACCTATTTTGCTTCAAATCTGTTGTTGACTTCCGATTTATGTCGAACTGTAGTGTGGATGATGAAATGAGACGGTGTTTCGATGATAGAGTAGTGTAGAGTGTGGGCGTTTTGTGTATTGCTTTATTTATTACTACTTTTTTTATGTTGTTGACTTTTCCGTTATATGTACCTTTTTTTCATAGGTGCTTAGCATAAAAGGCTTTCAAAATGCAAGCTTCAACTTTCACAGTCAAAGGCAACACAGCATTTGGCCTTCAAAATCGAAGGATTTTGCAAGGGGTTAGTGATTTGCGTAGTAGGACTTTAGCTGGTAAAAGTCTTCGGATGACGGGCAGTTGCTTCGGAGTAAGTATGGATTCTGCTTCAATGGGAATCGAACTTGGCCGTGCTAGGAGGACTGTTCAAAGTGTCTTCGGTTCGTCCGCGAAGGCCAGATCACACAGAGTTCGAGCTGCTGGTACATGTTTATATACTGATTCAACTTTATAGCTTGATACAGAGGATTTATATATAGAGAGAGGTATATTTTGTTGATTGTTTTGGGGGTGTGTAATTCCGAATTTCCTTATGCCGTGATAAAAATCTGTTTGGTATTGTTTTTAGAGTATGCACCTGTTTAGAGAGATGTAATTTTCTTCCTTAATGAGTTTAGGGTTAAGTTTAATCTTGTCTCAGTATATTGACTGTAGGATTCACTCTATTGGATTACAATGTGAGGAAATTCATTACTGTCTTCATTACAGATATTTTTGTGGTACTGTTCCACGCTGGTTTGGTTTCTGCTTTTGCATGCGAAGGAGTATTAAAATTCTGCTATTGTGCTAACATAAGGTGGCTAAAAACTGTTAACTGGTAGTCTGGAATTTCTGGTTCCCTTTTGTCTACTATGACAGTATATCACCACATTTGTGATTTGGTAAAGGGTAAAGGAAGGGGAGACTAGAAGTGGATAATAGTTGGGTGCGAAGTTGCTTTGGTACTGCACAACTGGCATGGGGGTATGGTTAGTTGTAATTTGGTGAGAATGGTCACTTAGGAATTGGACTGCATGCAGGTTCCAAGTGAGAAAGGACACATCCGGTGGATGGACATAGTGCTTGGACAATAGTAAAAGATTATTAACTTTTCTCATATGGGTGGGAACCAAGTGAAAAGTCTTTCTTTTTCTCTCTTACCTTTCTTAGTTCTGGATCTCATTTCCAGAAAAAACATGAACCTAAACTTCTCCTTTTCACCTGAGCTTTCTGTTCGAGTAGATAAATCTTAGATTTTATTTTTAAAAAAAGAACATTTTTCATTGTTTTGTCATGTGGATTAAGCATCAGCCGAGTATGTTGTTCAAAGAATACTATTGAAACTTAAATAAGCTGCAACTTGACTGCCTCTCTTTGGATAGGATAACAACAAAGGTCCTGCATGATGCATGAAACTTACTAACAAGGGCGTCTATTGTTGCGTGGCAGGAGAGGATATTGAGGATGCAGCACCTCTCAAAGTTCAAGGCCAATCATCTGGATCAGTACTTCCCTATGTGGGTGTAGCTTGTCTGGCAGCAATTTTATTTGGATATCACCTAGGGTATGACATTATATGATTGAAGAACATTCATTTACTGGTATTTTATCTTACATATGTTATCATAATTGCCTGAGTCTAAGGGGGGTGGGTATTCAGTTCTTCAGTTAGGTTTTTCGGTTTTTTAATAGTGTAAACCGAAATACTGAACCAAACTACTTTGGTTTGGTTCGGTTCAATTCAATTTTTAAAATTTGTTTTTTTGGGTATTTATGAAGAATGTCAACAATAAGAAACAATAAATATATCTCGCGAATAAATTAGAAAAATGTCAACTATGTCGTCCCAACGCAAAGACAACTAATGTAGGCTTGTTTGATTTATATAGATATAAAGCCACATCATTAATTTTCTAAAAAATTAATTTATGAATGTTTTCATAGTTTCGTCCGTAACATAATTAGATATCTTCTTTTTGATCCAAAATGAAGCCAGTGATTTCTATCCACACTATGTTCAGTAAATCTTAAAATTAATGAAATAAAATACACAAAAAATAATTGTCTATTTTGGTTATTGTCAAGAGGAGTAGTAACTTATCAAGTCCCCTTCAGCTAATTTGCAAAAATATGCTCTTCATCCTTACTTTGTTCATCAGCTTGGGGCAGAGGAACACTGAAGTGACTTGCAAAATGACTTTGAGAGCGATCATTCAACCAGCTGAACTGGAAAGTGGTTGAATCGGTGAATGTGCATGTATATAAACAAAACAAAAGAGAAGTCTTTTGGTTTAGTCATTTTCTTCTTTTTATTTGAGAAACCAAATAAAAGCAAATTATAAAAAAATTAACTTATATTATTAAACTTTGGTTCTTCGGAGCACCGAAATACTGAATCCTAAAACAGAGAACCAAACCAAAAGAACTGAAGAACCGAATCACTTTTGTTCGGTTTTTGGTAATTATGCCCACCTCATCGTGTCTCTCCATCAACATGTTTATGCATTTCATAGGTATGTCCACAGGTTTATTCTGTTTTACAGACTAGTTGGAATTAGACTATTAATGCTGGTTTGGACCCAAACCTTAACCAATGAAAGTGCAATCATAGTATTTGCTTAGTTGGTCCTGGTTGCCAGCTCAACTGTTTGATTGGATAAGCTAAATATTTGTTGATTCTATATTTTGTTTTCTCATGAATGAAACTCAAAGTTTTGTTTGTAGTTTGCATTCCCTATCAATTTTCTGAATTTTCTTCTCACCAAGAACTGAAGTTTGTTTTATATAAATAAGAAATTGGGCCTAAAAAGAGAGGCAAACAACTTTCAGAACTTTAAAGTAGGCCCTGATACCTTTTTAATAACAACTTACTGAAAATATGGCGAAGTTGAATGATAAAAGTTGCTTCTTAATAAAGTTGACATAACTCTTGGAGAATCCACCGAAAGCGGAATGTGACAGTTCACAGTTATTATGGGTTAGGGGAGTGTTTCTACCACCATACTTTAGAAAGTGAATAATAGATGAATTAGTTCAGTTTTGGTTACCTGTCTGCTCAATCTTTGGGTCAGACTGGACCAAACATTTCTTTATTTTGAAACTGGTAACAAACTAGACCAAACATTTCTTGTTCAGGCATTTTCTAAATTCTAAGCCATAAGCATTTTTAGTTCAGGTACATAAACATTCCAAGCCCTGCAGTTTATCCATGTAACCCTCTGTTTTATATTGTGCTATTAAGTTCCATGATAACCGTCATTTTTCTGGTTCAGGGTGGTGAATGGTGCCCTTGAGTACCTAGCTAAGGATCTTGGGATTGCCGAGAACACTGTTATACAAGGCAAGTTTTATTGGATGGTTTTTTATGTGAAATATAGCTTTAATTGATTACTATCCTATTTTTCTGGTTTCTGAGCTGCTGGAGAAAGGGTCAGCTTTTTATGAAGCCTTTGCTCTGTCACAGAGTTGATGTTTTGGCTATGTTGGGTTAAAAGATCTTTTGGAAGCCTTGTTCAGATGTCCTATTTCTTACAGTTCACTTCCTTTGGTTAATTATCTAGATATAGGTGGACCAATCTTTTATTTGATTTCTTTTGTTAGGATGGATTGTTAGCACAGTTCTTGCTGGTGCCTTTGTTGGTTCATTTACTGGTGGAGCTCTGGCTGATAAATTTGGCCGAACAAAGACATTTATATTGGATGCAATTCCACTTTCAGTTGGTGCGTTTCTATGGTATGTACCTTACCATAGTCAGAGATACAATATCAGGTCAATACCATTGATACAAGCATCTAATATGATGTCAAAACTTTCAGTACCACTGCCCAGAGTGTTCAGGCTATGATCATTGGACGCTTACTTACTGGA</genome_strand>
        <mrna_strand>CTCTCTTCGAATTCATCGAACCTCCCAATGCAAATTCTGCTGTAATTTTACGATAAAGCAACAAAGAAGAACATTCATCGAAGAGGATACAGTTAGCAAACTCTATAATCTCTCACCTTCAACACTCTACTTTGCATAATTTCAC-..................................................................................................................................................................................................................................................................................................-TG-TAAGCATAAAAGGCTTTCAAAATGCAAGCTTCAACTTTCACAGTCAAAGGCAACACAGCATTTGGCCTTCAAAATCGAAGGATTTTGCAAGGGGTGAGTGATTTGCGTAGTATGACTTTAGCTGGTAAAAGTCTCCGGATGACGGGCAGTTGCATCGGAGCAAGTATGGATTCTGCTTCAATGGGAATCGAACTTGGTCGTGCTAGGAGGACTGTTCAAAGTGTCTTCGGTTCGTCCGCAAAGGCCAGATCACACAGAATTCGAGCTGCTG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAGAGGATATTGAGGATGCAGCACCTCTCAAAGTTCAAGGCCAATCATCTGGATCAGTACTTCCCTATGTGGGTGTAGCTTGTCTGGCAGCAATTTTATTTGGATATCACCTAGG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGTGGTGAATGGTGCCCTTGAGTACCTAGCTAAGGATCTTGGGATTGCCGAGAACACTGTTATACAAG....................................................................................................................................................................................................................................................................GATGGATTGTTAGCACAGTTCTTGCTGGCGCCTTTGTTGGTTCATTTACTGGTGGAGCTCTGGCTGATAAATTTGGCCGAAC-AAGACATTTATATTGGATGCAATTCCACTTTCAGTTGGTGCGTTTCTATG...................................................................................TACCACTGCCCAGAGTGGTCAGGCTATGATCATTGGACGCTTACTTACTGGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0010E18-vqLN4/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E358647" ref_strand="+" ref_description="SGN-E358647 [cLHT-22-B5]">
      <seq>tctcttcgaattcatcgaacctcccaatgcaaattctggtgtaatgttacgataaagcaacaaagaagaacattcatcgaagaggatacagttagcaaactctataatctctcaccttcaacactctactttgcataatttcactgtaagcataaaaggctttcaaaatgcaagcttcaactttcacagtcaaaggcaacacagcatttggccttcaaaatcgaaggattttgcaaggggtgagtgatttgcgtagtatgactttagctggtaaaagtctccggatgacgggcagttgcatcggagcaagtatggattctgcttcaatgggaatcgaacttggtcgtgctaggaggactgttcaaagtgtc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0010E18-vqLN4/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02SLe0010E18.1" temp_strand="+" temp_description="C02SLe0010E18.1  AC215443.1 htgs_phase:3 submitted_to_sgn_as:C02SLe0010E18 sequenced_by:kribb upload_account_name:korea">
        <position start="82144" stop="83406"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="82444" g_stop="82587" g_length="144"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="144" r_length="144" r_score="0.965"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="82588" i_stop="82877" i_length="290">
            <donor d_prob="0.879" d_score="0.94"/>
            <acceptor a_prob="0.996" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="82878" g_stop="83106" g_length="229"/>
          <reference_exon_boundary r_type="cDNA" r_start="145" r_stop="371" r_length="227" r_score="0.961"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLe0010E18.1" gen_strand="+" ref_id="SGN-E358647" ref_strand="+">
        <total_alignment_score>0.962</total_alignment_score>
        <cumulative_length_of_scored_exons>373</cumulative_length_of_scored_exons>
        <coverage percentage="1.005" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0010E18.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E358647" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="82444" e_stop="82587"/>
          <exon e_start="82878" e_stop="83106"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCTCTTCGAATTCATCGAACCTCCCAATGCAAATTCTGCTGTAATTTTACGATAAAGCAACAAAGAAGAACATTCATCGAAGAGGATACAGTTAGC-AACTCTATAATCTCTCACCTTCAACACTCTACTTTGCATAATTTCACTGTATTTATTCCACTTCTTGATTTGATTTTTTTTCCCATCATTTTCAATCTCGTTGCGATTTTGTTTGATTTCTTCATATAATCAGCTCTTTGGAATGCGAATTGAGACCTATTTTGCTTCAAATCTGTTGTTGACTTCCGATTTATGTCGAACTGTAGTGTGGATGATGAAATGAGACGGTGTTTCGATGATAGAGTAGTGTAGAGTGTGGGCGTTTTGTGTATTGCTTTATTTATTACTACTTTTTTTATGTTGTTGACTTTTCCGTTATATGTACCTTTTTTTCATAGGTGCTTAGCATAAAAGGCTTTCAAAATGCAAGCTTCAACTTTCACAGTCAAAGGCAACACAGCATTTGGCCTTCAAAATCGAAGGATTTTGCAAGGGGTTAGTGATTTGCGTAGTAGGACTTTAGCTGGTAAAAGTCTTCGGATGACGGGCAGTTGCTTCGGAGTAAGTATGGATTCTGCTTCAATGGGAATCGAACTTGGCCGTGCTAGGAGGACTGTTCAAAGTGTC</genome_strand>
        <mrna_strand>TCTCTTCGAATTCATCGAACCTCCCAATGCAAATTCTGGTGTAATGTTACGATAAAGCAACAAAGAAGAACATTCATCGAAGAGGATACAGTTAGCAAACTCTATAATCTCTCACCTTCAACACTCTACTTTGCATAATTTCAC-..................................................................................................................................................................................................................................................................................................-TG-TAAGCATAAAAGGCTTTCAAAATGCAAGCTTCAACTTTCACAGTCAAAGGCAACACAGCATTTGGCCTTCAAAATCGAAGGATTTTGCAAGGGGTGAGTGATTTGCGTAGTATGACTTTAGCTGGTAAAAGTCTCCGGATGACGGGCAGTTGCATCGGAGCAAGTATGGATTCTGCTTCAATGGGAATCGAACTTGGTCGTGCTAGGAGGACTGTTCAAAGTGTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0010E18-vqLN4/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E278519" ref_strand="-" ref_description="SGN-E278519 [cLEL-2-P19](-)">
      <seq>gcacgagggccttcaaaatcgaaggattttgcaaggggttagtgatttgcgtagtaggactttagctggccaaagtcctcggatgacgggcagttgcttcggagtaagtatggattctgcttcaatgggaatcgaacttggccgtgctaggaggactgttcaaagtgtcttcggttcgtccgcgaaggccagatcacacagagttcgagctgctggagaggatattgaggatgcagcacctctcaaagttcaaggccaatcatctggatcagtact</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0010E18-vqLN4/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02SLe0010E18.1" temp_strand="+" temp_description="C02SLe0010E18.1  AC215443.1 htgs_phase:3 submitted_to_sgn_as:C02SLe0010E18 sequenced_by:kribb upload_account_name:korea">
        <position start="82645" stop="84519"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="82939" g_stop="83152" g_length="214"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="215" r_length="215" r_score="0.963"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="83153" i_stop="84158" i_length="1006">
            <donor d_prob="0.982" d_score="1.00"/>
            <acceptor a_prob="0.718" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="84159" g_stop="84219" g_length="61"/>
          <reference_exon_boundary r_type="cDNA" r_start="216" r_stop="276" r_length="61" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLe0010E18.1" gen_strand="+" ref_id="SGN-E278519" ref_strand="-">
        <total_alignment_score>0.971</total_alignment_score>
        <cumulative_length_of_scored_exons>275</cumulative_length_of_scored_exons>
        <coverage percentage="0.996" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0010E18.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E278519" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="82939" e_stop="83152"/>
          <exon e_start="84159" e_stop="84219"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCATTTG-GCCTTCAAAATCGAAGGATTTTGCAAGGGGTTAGTGATTTGCGTAGTAGGACTTTAGCTGGTAAAAGTCTTCGGATGACGGGCAGTTGCTTCGGAGTAAGTATGGATTCTGCTTCAATGGGAATCGAACTTGGCCGTGCTAGGAGGACTGTTCAAAGTGTCTTCGGTTCGTCCGCGAAGGCCAGATCACACAGAGTTCGAGCTGCTGGTACATGTTTATATACTGATTCAACTTTATAGCTTGATACAGAGGATTTATATATAGAGAGAGGTATATTTTGTTGATTGTTTTGGGGGTGTGTAATTCCGAATTTCCTTATGCCGTGATAAAAATCTGTTTGGTATTGTTTTTAGAGTATGCACCTGTTTAGAGAGATGTAATTTTCTTCCTTAATGAGTTTAGGGTTAAGTTTAATCTTGTCTCAGTATATTGACTGTAGGATTCACTCTATTGGATTACAATGTGAGGAAATTCATTACTGTCTTCATTACAGATATTTTTGTGGTACTGTTCCACGCTGGTTTGGTTTCTGCTTTTGCATGCGAAGGAGTATTAAAATTCTGCTATTGTGCTAACATAAGGTGGCTAAAAACTGTTAACTGGTAGTCTGGAATTTCTGGTTCCCTTTTGTCTACTATGACAGTATATCACCACATTTGTGATTTGGTAAAGGGTAAAGGAAGGGGAGACTAGAAGTGGATAATAGTTGGGTGCGAAGTTGCTTTGGTACTGCACAACTGGCATGGGGGTATGGTTAGTTGTAATTTGGTGAGAATGGTCACTTAGGAATTGGACTGCATGCAGGTTCCAAGTGAGAAAGGACACATCCGGTGGATGGACATAGTGCTTGGACAATAGTAAAAGATTATTAACTTTTCTCATATGGGTGGGAACCAAGTGAAAAGTCTTTCTTTTTCTCTCTTACCTTTCTTAGTTCTGGATCTCATTTCCAGAAAAAACATGAACCTAAACTTCTCCTTTTCACCTGAGCTTTCTGTTCGAGTAGATAAATCTTAGATTTTATTTTTAAAAAAAGAACATTTTTCATTGTTTTGTCATGTGGATTAAGCATCAGCCGAGTATGTTGTTCAAAGAATACTATTGAAACTTAAATAAGCTGCAACTTGACTGCCTCTCTTTGGATAGGATAACAACAAAGGTCCTGCATGATGCATGAAACTTACTAACAAGGGCGTCTATTGTTGCGTGGCAGGAGAGGATATTGAGGATGCAGCACCTCTCAAAGTTCAAGGCCAATCATCTGGATCAGTACT</genome_strand>
        <mrna_strand>GCACGAGGGCCTTCAAAATCGAAGGATTTTGCAAGGGGTTAGTGATTTGCGTAGTAGGACTTTAGCTGGCCAAAGTCCTCGGATGACGGGCAGTTGCTTCGGAGTAAGTATGGATTCTGCTTCAATGGGAATCGAACTTGGCCGTGCTAGGAGGACTGTTCAAAGTGTCTTCGGTTCGTCCGCGAAGGCCAGATCACACAGAGTTCGAGCTGCTG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAGAGGATATTGAGGATGCAGCACCTCTCAAAGTTCAAGGCCAATCATCTGGATCAGTACT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0010E18-vqLN4/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E347003" ref_strand="+" ref_description="SGN-E347003 [cTOF-25-C18]">
      <seq>tgcttcaatgggaatcgaacttggccgtgctaggaggactgttcaaagtgtcttcggttcgtccgcgaaggccagatcacacagagttcgagctgctggagaggatattgaggatgcagcacctctcaaagttcaaggccaatcatctggatcagtacttccctatgtgggtgtagcttgtctggcagcaattttatttggatatcacctaggggtggtgaatggtgcccttgagtacctagctaaggatcttgggattgccgagaacactgttatacaaggatggattgttagcacagttcttgctggtgcctttgttggttcatttactggtggagctctggctgataaatttggccgaacaaagacatttatattggatgcaattccactttcagttggtgcgtttctatgtaccactgcccagagtgttcaggctatgatcattggacgcttacttactggaattggcattggcatctcatctgctattgtgccactttacatatctgagatctcacccacggaaattcgcggtacactgtgaacggtcaatcagctattcattcgcattggaattcttgttgcactagtggctggattgcctttgtctggaaatccttcatg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0010E18-vqLN4/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02SLe0010E18.1" temp_strand="+" temp_description="C02SLe0010E18.1  AC215443.1 htgs_phase:3 submitted_to_sgn_as:C02SLe0010E18 sequenced_by:kribb upload_account_name:korea">
        <position start="82755" stop="87135"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="83055" g_stop="83152" g_length="98"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="98" r_length="98" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="83153" i_stop="84158" i_length="1006">
            <donor d_prob="0.982" d_score="1.00"/>
            <acceptor a_prob="0.718" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="84159" g_stop="84273" g_length="115"/>
          <reference_exon_boundary r_type="cDNA" r_start="99" r_stop="213" r_length="115" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="84274" i_stop="85981" i_length="1708">
            <donor d_prob="0.301" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="85982" g_stop="86049" g_length="68"/>
          <reference_exon_boundary r_type="cDNA" r_start="214" r_stop="281" r_length="68" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="86050" i_stop="86309" i_length="260">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.878" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="86310" g_stop="86442" g_length="133"/>
          <reference_exon_boundary r_type="cDNA" r_start="282" r_stop="414" r_length="133" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="86443" i_stop="86525" i_length="83">
            <donor d_prob="0.858" d_score="1.00"/>
            <acceptor a_prob="0.397" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="86526" g_stop="86625" g_length="100"/>
          <reference_exon_boundary r_type="cDNA" r_start="415" r_stop="514" r_length="100" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="86626" i_stop="86722" i_length="97">
            <donor d_prob="0.980" d_score="1.00"/>
            <acceptor a_prob="0.091" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="86723" g_stop="86835" g_length="113"/>
          <reference_exon_boundary r_type="cDNA" r_start="515" r_stop="627" r_length="113" r_score="0.973"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLe0010E18.1" gen_strand="+" ref_id="SGN-E347003" ref_strand="+">
        <total_alignment_score>0.995</total_alignment_score>
        <cumulative_length_of_scored_exons>627</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0010E18.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E347003" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="83055" e_stop="83152"/>
          <exon e_start="84159" e_stop="84273"/>
          <exon e_start="85982" e_stop="86049"/>
          <exon e_start="86310" e_stop="86442"/>
          <exon e_start="86526" e_stop="86625"/>
          <exon e_start="86723" e_stop="86835"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGCTTCAATGGGAATCGAACTTGGCCGTGCTAGGAGGACTGTTCAAAGTGTCTTCGGTTCGTCCGCGAAGGCCAGATCACACAGAGTTCGAGCTGCTGGTACATGTTTATATACTGATTCAACTTTATAGCTTGATACAGAGGATTTATATATAGAGAGAGGTATATTTTGTTGATTGTTTTGGGGGTGTGTAATTCCGAATTTCCTTATGCCGTGATAAAAATCTGTTTGGTATTGTTTTTAGAGTATGCACCTGTTTAGAGAGATGTAATTTTCTTCCTTAATGAGTTTAGGGTTAAGTTTAATCTTGTCTCAGTATATTGACTGTAGGATTCACTCTATTGGATTACAATGTGAGGAAATTCATTACTGTCTTCATTACAGATATTTTTGTGGTACTGTTCCACGCTGGTTTGGTTTCTGCTTTTGCATGCGAAGGAGTATTAAAATTCTGCTATTGTGCTAACATAAGGTGGCTAAAAACTGTTAACTGGTAGTCTGGAATTTCTGGTTCCCTTTTGTCTACTATGACAGTATATCACCACATTTGTGATTTGGTAAAGGGTAAAGGAAGGGGAGACTAGAAGTGGATAATAGTTGGGTGCGAAGTTGCTTTGGTACTGCACAACTGGCATGGGGGTATGGTTAGTTGTAATTTGGTGAGAATGGTCACTTAGGAATTGGACTGCATGCAGGTTCCAAGTGAGAAAGGACACATCCGGTGGATGGACATAGTGCTTGGACAATAGTAAAAGATTATTAACTTTTCTCATATGGGTGGGAACCAAGTGAAAAGTCTTTCTTTTTCTCTCTTACCTTTCTTAGTTCTGGATCTCATTTCCAGAAAAAACATGAACCTAAACTTCTCCTTTTCACCTGAGCTTTCTGTTCGAGTAGATAAATCTTAGATTTTATTTTTAAAAAAAGAACATTTTTCATTGTTTTGTCATGTGGATTAAGCATCAGCCGAGTATGTTGTTCAAAGAATACTATTGAAACTTAAATAAGCTGCAACTTGACTGCCTCTCTTTGGATAGGATAACAACAAAGGTCCTGCATGATGCATGAAACTTACTAACAAGGGCGTCTATTGTTGCGTGGCAGGAGAGGATATTGAGGATGCAGCACCTCTCAAAGTTCAAGGCCAATCATCTGGATCAGTACTTCCCTATGTGGGTGTAGCTTGTCTGGCAGCAATTTTATTTGGATATCACCTAGGGTATGACATTATATGATTGAAGAACATTCATTTACTGGTATTTTATCTTACATATGTTATCATAATTGCCTGAGTCTAAGGGGGGTGGGTATTCAGTTCTTCAGTTAGGTTTTTCGGTTTTTTAATAGTGTAAACCGAAATACTGAACCAAACTACTTTGGTTTGGTTCGGTTCAATTCAATTTTTAAAATTTGTTTTTTTGGGTATTTATGAAGAATGTCAACAATAAGAAACAATAAATATATCTCGCGAATAAATTAGAAAAATGTCAACTATGTCGTCCCAACGCAAAGACAACTAATGTAGGCTTGTTTGATTTATATAGATATAAAGCCACATCATTAATTTTCTAAAAAATTAATTTATGAATGTTTTCATAGTTTCGTCCGTAACATAATTAGATATCTTCTTTTTGATCCAAAATGAAGCCAGTGATTTCTATCCACACTATGTTCAGTAAATCTTAAAATTAATGAAATAAAATACACAAAAAATAATTGTCTATTTTGGTTATTGTCAAGAGGAGTAGTAACTTATCAAGTCCCCTTCAGCTAATTTGCAAAAATATGCTCTTCATCCTTACTTTGTTCATCAGCTTGGGGCAGAGGAACACTGAAGTGACTTGCAAAATGACTTTGAGAGCGATCATTCAACCAGCTGAACTGGAAAGTGGTTGAATCGGTGAATGTGCATGTATATAAACAAAACAAAAGAGAAGTCTTTTGGTTTAGTCATTTTCTTCTTTTTATTTGAGAAACCAAATAAAAGCAAATTATAAAAAAATTAACTTATATTATTAAACTTTGGTTCTTCGGAGCACCGAAATACTGAATCCTAAAACAGAGAACCAAACCAAAAGAACTGAAGAACCGAATCACTTTTGTTCGGTTTTTGGTAATTATGCCCACCTCATCGTGTCTCTCCATCAACATGTTTATGCATTTCATAGGTATGTCCACAGGTTTATTCTGTTTTACAGACTAGTTGGAATTAGACTATTAATGCTGGTTTGGACCCAAACCTTAACCAATGAAAGTGCAATCATAGTATTTGCTTAGTTGGTCCTGGTTGCCAGCTCAACTGTTTGATTGGATAAGCTAAATATTTGTTGATTCTATATTTTGTTTTCTCATGAATGAAACTCAAAGTTTTGTTTGTAGTTTGCATTCCCTATCAATTTTCTGAATTTTCTTCTCACCAAGAACTGAAGTTTGTTTTATATAAATAAGAAATTGGGCCTAAAAAGAGAGGCAAACAACTTTCAGAACTTTAAAGTAGGCCCTGATACCTTTTTAATAACAACTTACTGAAAATATGGCGAAGTTGAATGATAAAAGTTGCTTCTTAATAAAGTTGACATAACTCTTGGAGAATCCACCGAAAGCGGAATGTGACAGTTCACAGTTATTATGGGTTAGGGGAGTGTTTCTACCACCATACTTTAGAAAGTGAATAATAGATGAATTAGTTCAGTTTTGGTTACCTGTCTGCTCAATCTTTGGGTCAGACTGGACCAAACATTTCTTTATTTTGAAACTGGTAACAAACTAGACCAAACATTTCTTGTTCAGGCATTTTCTAAATTCTAAGCCATAAGCATTTTTAGTTCAGGTACATAAACATTCCAAGCCCTGCAGTTTATCCATGTAACCCTCTGTTTTATATTGTGCTATTAAGTTCCATGATAACCGTCATTTTTCTGGTTCAGGGTGGTGAATGGTGCCCTTGAGTACCTAGCTAAGGATCTTGGGATTGCCGAGAACACTGTTATACAAGGCAAGTTTTATTGGATGGTTTTTTATGTGAAATATAGCTTTAATTGATTACTATCCTATTTTTCTGGTTTCTGAGCTGCTGGAGAAAGGGTCAGCTTTTTATGAAGCCTTTGCTCTGTCACAGAGTTGATGTTTTGGCTATGTTGGGTTAAAAGATCTTTTGGAAGCCTTGTTCAGATGTCCTATTTCTTACAGTTCACTTCCTTTGGTTAATTATCTAGATATAGGTGGACCAATCTTTTATTTGATTTCTTTTGTTAGGATGGATTGTTAGCACAGTTCTTGCTGGTGCCTTTGTTGGTTCATTTACTGGTGGAGCTCTGGCTGATAAATTTGGCCGAACAAAGACATTTATATTGGATGCAATTCCACTTTCAGTTGGTGCGTTTCTATGGTATGTACCTTACCATAGTCAGAGATACAATATCAGGTCAATACCATTGATACAAGCATCTAATATGATGTCAAAACTTTCAGTACCACTGCCCAGAGTGTTCAGGCTATGATCATTGGACGCTTACTTACTGGAATTGGCATTGGCATCTCATCTGCTATTGTGCCACTTTACATATCTGAGGTGTATATCTCACTCAAAGTTACATCACCTTTTTAGACAGTATTCAAAGGTTGTACTTTCGTGTTTCATAGCATCCTAACAAACTTTCGGTGCTTAGATCTCACCCACGGAAATTCGCGGCACACTGGGAACGGTCAATCAGCTATTCATTTGCATTGGAATTCTTGTTGCACTAGTGGCTGGATTGCCTTTGTCTGGAAATCCTTCATG</genome_strand>
        <mrna_strand>TGCTTCAATGGGAATCGAACTTGGCCGTGCTAGGAGGACTGTTCAAAGTGTCTTCGGTTCGTCCGCGAAGGCCAGATCACACAGAGTTCGAGCTGCTG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAGAGGATATTGAGGATGCAGCACCTCTCAAAGTTCAAGGCCAATCATCTGGATCAGTACTTCCCTATGTGGGTGTAGCTTGTCTGGCAGCAATTTTATTTGGATATCACCTAGG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGTGGTGAATGGTGCCCTTGAGTACCTAGCTAAGGATCTTGGGATTGCCGAGAACACTGTTATACAAG....................................................................................................................................................................................................................................................................GATGGATTGTTAGCACAGTTCTTGCTGGTGCCTTTGTTGGTTCATTTACTGGTGGAGCTCTGGCTGATAAATTTGGCCGAACAAAGACATTTATATTGGATGCAATTCCACTTTCAGTTGGTGCGTTTCTATG...................................................................................TACCACTGCCCAGAGTGTTCAGGCTATGATCATTGGACGCTTACTTACTGGAATTGGCATTGGCATCTCATCTGCTATTGTGCCACTTTACATATCTGAG.................................................................................................ATCTCACCCACGGAAATTCGCGGTACACTGTGAACGGTCAATCAGCTATTCATTCGCATTGGAATTCTTGTTGCACTAGTGGCTGGATTGCCTTTGTCTGGAAATCCTTCATG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0010E18-vqLN4/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E246497" ref_strand="+" ref_description="SGN-E246497 [cLEF-45-C21]">
      <seq>aaagttcaaggccaatcatctggatcagtacttccctatgtgggtgtagcttgtctggcagcaattttatttggatatcacctaggggtggtgaatggtgcccttgagtacctagctaaggatcttgggattgccgagaacactgttatacaaggatggattgttagcacagttcttgctggtgcctttgttggttcatttactggtggagctctggctgataaatttggccgaacaaagacatttatattggatgcaattccactttcagttggtgcgtttctatgtaccactgcccagagtgttcaggctatgatcattggacgcttacttactggaattggcattggcatctcatctgctattgtgccactttacatatctgagatctcacccacggaaattcgcggcacactgggaacggtcaatcagctattcatttgcattggaattcttgttgcact</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0010E18-vqLN4/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02SLe0010E18.1" temp_strand="+" temp_description="C02SLe0010E18.1  AC215443.1 htgs_phase:3 submitted_to_sgn_as:C02SLe0010E18 sequenced_by:kribb upload_account_name:korea">
        <position start="83888" stop="87099"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="84188" g_stop="84273" g_length="86"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="86" r_length="86" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="84274" i_stop="85981" i_length="1708">
            <donor d_prob="0.301" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="85982" g_stop="86049" g_length="68"/>
          <reference_exon_boundary r_type="cDNA" r_start="87" r_stop="154" r_length="68" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="86050" i_stop="86309" i_length="260">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.878" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="86310" g_stop="86442" g_length="133"/>
          <reference_exon_boundary r_type="cDNA" r_start="155" r_stop="287" r_length="133" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="86443" i_stop="86525" i_length="83">
            <donor d_prob="0.858" d_score="1.00"/>
            <acceptor a_prob="0.397" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="86526" g_stop="86625" g_length="100"/>
          <reference_exon_boundary r_type="cDNA" r_start="288" r_stop="387" r_length="100" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="86626" i_stop="86722" i_length="97">
            <donor d_prob="0.980" d_score="1.00"/>
            <acceptor a_prob="0.091" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="86723" g_stop="86799" g_length="77"/>
          <reference_exon_boundary r_type="cDNA" r_start="388" r_stop="464" r_length="77" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLe0010E18.1" gen_strand="+" ref_id="SGN-E246497" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>464</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0010E18.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E246497" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="84188" e_stop="84273"/>
          <exon e_start="85982" e_stop="86049"/>
          <exon e_start="86310" e_stop="86442"/>
          <exon e_start="86526" e_stop="86625"/>
          <exon e_start="86723" e_stop="86799"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAGTTCAAGGCCAATCATCTGGATCAGTACTTCCCTATGTGGGTGTAGCTTGTCTGGCAGCAATTTTATTTGGATATCACCTAGGGTATGACATTATATGATTGAAGAACATTCATTTACTGGTATTTTATCTTACATATGTTATCATAATTGCCTGAGTCTAAGGGGGGTGGGTATTCAGTTCTTCAGTTAGGTTTTTCGGTTTTTTAATAGTGTAAACCGAAATACTGAACCAAACTACTTTGGTTTGGTTCGGTTCAATTCAATTTTTAAAATTTGTTTTTTTGGGTATTTATGAAGAATGTCAACAATAAGAAACAATAAATATATCTCGCGAATAAATTAGAAAAATGTCAACTATGTCGTCCCAACGCAAAGACAACTAATGTAGGCTTGTTTGATTTATATAGATATAAAGCCACATCATTAATTTTCTAAAAAATTAATTTATGAATGTTTTCATAGTTTCGTCCGTAACATAATTAGATATCTTCTTTTTGATCCAAAATGAAGCCAGTGATTTCTATCCACACTATGTTCAGTAAATCTTAAAATTAATGAAATAAAATACACAAAAAATAATTGTCTATTTTGGTTATTGTCAAGAGGAGTAGTAACTTATCAAGTCCCCTTCAGCTAATTTGCAAAAATATGCTCTTCATCCTTACTTTGTTCATCAGCTTGGGGCAGAGGAACACTGAAGTGACTTGCAAAATGACTTTGAGAGCGATCATTCAACCAGCTGAACTGGAAAGTGGTTGAATCGGTGAATGTGCATGTATATAAACAAAACAAAAGAGAAGTCTTTTGGTTTAGTCATTTTCTTCTTTTTATTTGAGAAACCAAATAAAAGCAAATTATAAAAAAATTAACTTATATTATTAAACTTTGGTTCTTCGGAGCACCGAAATACTGAATCCTAAAACAGAGAACCAAACCAAAAGAACTGAAGAACCGAATCACTTTTGTTCGGTTTTTGGTAATTATGCCCACCTCATCGTGTCTCTCCATCAACATGTTTATGCATTTCATAGGTATGTCCACAGGTTTATTCTGTTTTACAGACTAGTTGGAATTAGACTATTAATGCTGGTTTGGACCCAAACCTTAACCAATGAAAGTGCAATCATAGTATTTGCTTAGTTGGTCCTGGTTGCCAGCTCAACTGTTTGATTGGATAAGCTAAATATTTGTTGATTCTATATTTTGTTTTCTCATGAATGAAACTCAAAGTTTTGTTTGTAGTTTGCATTCCCTATCAATTTTCTGAATTTTCTTCTCACCAAGAACTGAAGTTTGTTTTATATAAATAAGAAATTGGGCCTAAAAAGAGAGGCAAACAACTTTCAGAACTTTAAAGTAGGCCCTGATACCTTTTTAATAACAACTTACTGAAAATATGGCGAAGTTGAATGATAAAAGTTGCTTCTTAATAAAGTTGACATAACTCTTGGAGAATCCACCGAAAGCGGAATGTGACAGTTCACAGTTATTATGGGTTAGGGGAGTGTTTCTACCACCATACTTTAGAAAGTGAATAATAGATGAATTAGTTCAGTTTTGGTTACCTGTCTGCTCAATCTTTGGGTCAGACTGGACCAAACATTTCTTTATTTTGAAACTGGTAACAAACTAGACCAAACATTTCTTGTTCAGGCATTTTCTAAATTCTAAGCCATAAGCATTTTTAGTTCAGGTACATAAACATTCCAAGCCCTGCAGTTTATCCATGTAACCCTCTGTTTTATATTGTGCTATTAAGTTCCATGATAACCGTCATTTTTCTGGTTCAGGGTGGTGAATGGTGCCCTTGAGTACCTAGCTAAGGATCTTGGGATTGCCGAGAACACTGTTATACAAGGCAAGTTTTATTGGATGGTTTTTTATGTGAAATATAGCTTTAATTGATTACTATCCTATTTTTCTGGTTTCTGAGCTGCTGGAGAAAGGGTCAGCTTTTTATGAAGCCTTTGCTCTGTCACAGAGTTGATGTTTTGGCTATGTTGGGTTAAAAGATCTTTTGGAAGCCTTGTTCAGATGTCCTATTTCTTACAGTTCACTTCCTTTGGTTAATTATCTAGATATAGGTGGACCAATCTTTTATTTGATTTCTTTTGTTAGGATGGATTGTTAGCACAGTTCTTGCTGGTGCCTTTGTTGGTTCATTTACTGGTGGAGCTCTGGCTGATAAATTTGGCCGAACAAAGACATTTATATTGGATGCAATTCCACTTTCAGTTGGTGCGTTTCTATGGTATGTACCTTACCATAGTCAGAGATACAATATCAGGTCAATACCATTGATACAAGCATCTAATATGATGTCAAAACTTTCAGTACCACTGCCCAGAGTGTTCAGGCTATGATCATTGGACGCTTACTTACTGGAATTGGCATTGGCATCTCATCTGCTATTGTGCCACTTTACATATCTGAGGTGTATATCTCACTCAAAGTTACATCACCTTTTTAGACAGTATTCAAAGGTTGTACTTTCGTGTTTCATAGCATCCTAACAAACTTTCGGTGCTTAGATCTCACCCACGGAAATTCGCGGCACACTGGGAACGGTCAATCAGCTATTCATTTGCATTGGAATTCTTGTTGCACT</genome_strand>
        <mrna_strand>AAAGTTCAAGGCCAATCATCTGGATCAGTACTTCCCTATGTGGGTGTAGCTTGTCTGGCAGCAATTTTATTTGGATATCACCTAGG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGTGGTGAATGGTGCCCTTGAGTACCTAGCTAAGGATCTTGGGATTGCCGAGAACACTGTTATACAAG....................................................................................................................................................................................................................................................................GATGGATTGTTAGCACAGTTCTTGCTGGTGCCTTTGTTGGTTCATTTACTGGTGGAGCTCTGGCTGATAAATTTGGCCGAACAAAGACATTTATATTGGATGCAATTCCACTTTCAGTTGGTGCGTTTCTATG...................................................................................TACCACTGCCCAGAGTGTTCAGGCTATGATCATTGGACGCTTACTTACTGGAATTGGCATTGGCATCTCATCTGCTATTGTGCCACTTTACATATCTGAG.................................................................................................ATCTCACCCACGGAAATTCGCGGCACACTGGGAACGGTCAATCAGCTATTCATTTGCATTGGAATTCTTGTTGCACT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0010E18-vqLN4/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E247107" ref_strand="+" ref_description="SGN-E247107 [cLEF-41-P10]">
      <seq>acactgttatacaaggatggattgttagcacagttcttgctggtgcctttgttggttcatttactggtggagctctggctgataaatttggccgaacaaagacatttatattggatgcaattccactttcagttggtgcgtttctatgtaccactgcccagagtgttcaggctatgatcattggacgcttacttactggaattggcattggcatctcatctgctattgtgccactttacatatctgagatctcacccacggaaattcgcggcacactgggaacggtcaatcagctattcatttgcattggaattcttgttgcactagtggctggattgcctttgtctggaaatccttcatggaatggtattttctcccgaaagtcctcggtggctctatcagcaagggagaatatctgaagctgagacatctattaaaaggctatatggtaaagaaaaagttgctgaggttatgggtgatttggaagcttctgcccagggttcttcanaaccagatgctgggtggcttgatctattta</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0010E18-vqLN4/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02SLe0010E18.1" temp_strand="+" temp_description="C02SLe0010E18.1  AC215443.1 htgs_phase:3 submitted_to_sgn_as:C02SLe0010E18 sequenced_by:kribb upload_account_name:korea">
        <position start="86008" stop="88714"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="86035" g_stop="86049" g_length="15"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="15" r_length="15" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="86050" i_stop="86309" i_length="260">
            <donor d_prob="1.000" d_score="0.00"/>
            <acceptor a_prob="0.878" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="86310" g_stop="86442" g_length="133"/>
          <reference_exon_boundary r_type="cDNA" r_start="16" r_stop="148" r_length="133" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="86443" i_stop="86525" i_length="83">
            <donor d_prob="0.858" d_score="1.00"/>
            <acceptor a_prob="0.397" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="86526" g_stop="86625" g_length="100"/>
          <reference_exon_boundary r_type="cDNA" r_start="149" r_stop="248" r_length="100" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="86626" i_stop="86722" i_length="97">
            <donor d_prob="0.980" d_score="1.00"/>
            <acceptor a_prob="0.091" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="86723" g_stop="86835" g_length="113"/>
          <reference_exon_boundary r_type="cDNA" r_start="249" r_stop="361" r_length="113" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="86836" i_stop="88122" i_length="1287">
            <donor d_prob="0.959" d_score="1.00"/>
            <acceptor a_prob="0.582" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="88123" g_stop="88163" g_length="41"/>
          <reference_exon_boundary r_type="cDNA" r_start="362" r_stop="402" r_length="41" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="88164" i_stop="88278" i_length="115">
            <donor d_prob="0.923" d_score="1.00"/>
            <acceptor a_prob="0.906" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="88279" g_stop="88414" g_length="136"/>
          <reference_exon_boundary r_type="cDNA" r_start="403" r_stop="538" r_length="136" r_score="0.993"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLe0010E18.1" gen_strand="+" ref_id="SGN-E247107" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>538</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0010E18.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E247107" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="86035" e_stop="86049"/>
          <exon e_start="86310" e_stop="86442"/>
          <exon e_start="86526" e_stop="86625"/>
          <exon e_start="86723" e_stop="86835"/>
          <exon e_start="88123" e_stop="88163"/>
          <exon e_start="88279" e_stop="88414"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACACTGTTATACAAGGCAAGTTTTATTGGATGGTTTTTTATGTGAAATATAGCTTTAATTGATTACTATCCTATTTTTCTGGTTTCTGAGCTGCTGGAGAAAGGGTCAGCTTTTTATGAAGCCTTTGCTCTGTCACAGAGTTGATGTTTTGGCTATGTTGGGTTAAAAGATCTTTTGGAAGCCTTGTTCAGATGTCCTATTTCTTACAGTTCACTTCCTTTGGTTAATTATCTAGATATAGGTGGACCAATCTTTTATTTGATTTCTTTTGTTAGGATGGATTGTTAGCACAGTTCTTGCTGGTGCCTTTGTTGGTTCATTTACTGGTGGAGCTCTGGCTGATAAATTTGGCCGAACAAAGACATTTATATTGGATGCAATTCCACTTTCAGTTGGTGCGTTTCTATGGTATGTACCTTACCATAGTCAGAGATACAATATCAGGTCAATACCATTGATACAAGCATCTAATATGATGTCAAAACTTTCAGTACCACTGCCCAGAGTGTTCAGGCTATGATCATTGGACGCTTACTTACTGGAATTGGCATTGGCATCTCATCTGCTATTGTGCCACTTTACATATCTGAGGTGTATATCTCACTCAAAGTTACATCACCTTTTTAGACAGTATTCAAAGGTTGTACTTTCGTGTTTCATAGCATCCTAACAAACTTTCGGTGCTTAGATCTCACCCACGGAAATTCGCGGCACACTGGGAACGGTCAATCAGCTATTCATTTGCATTGGAATTCTTGTTGCACTAGTGGCTGGATTGCCTTTGTCTGGAAATCCTTCATGGTAATTTCTCATTACGTATGCTCATAGCAGAAAACAATTTAGAGTTTTGTAACTTTTAAATGATTGGTACATGATTTTATCCGAAGGCCTTTCAAAAGATTTTGGCAAAAGAAGATTCCAACAAGATGTCATGAATGGTTTTATCTAGACCTGATTAGTCCAGAACCAATAGGGTACCCATTTGGTGGTCCTAACATAATTCTGGAGTAGTTTGAGATTAAAGTGGTGGTAGATGTCAGAATTTAGCACCTTGGTGCCTAATTCCCTAGTCTGCTTATTTTTTCGTTTTTTGTAGTACATGAATCTTCTATTAATAATTTACAACTTAAATACAATTATCACTTTAGTTGAATTACTGGTGTATTTCTCTAATTTCATACAGTGGTGAGGTGAGGTCAGTTAAGCTTAAGTTTATTTATTCGGTTCTTTGATGAAAGTTGTAGATGTCTTTGTTTGCCCTTATATAAGCTACCTGGCAGAGTTCAATTGTTTTAAAATTAATTAAGTACTCAGGTTTGCTTATTATCTATTTTCTTCAATCTTTAAAAGTTTTACATTGATTTTATGATTTTTTTTTCATCAGGGAATTTCATTGTGACTTGAGTTTGTTTGTCCTTGAGAAATAATTTGAAGTAAAATGATTAATGTTTAATTTCTATTAGGAGTGTTGTACTCCAGCTTTTGGGTTCTAAAGCAAATAGCAATACTCTGTTTCTGTAGTTTTGACATTTAGTATCCTTTTCAATGTCCCAGATGCCAAAACTGTTCATGCTTAGGGAATATTTTCTCTAATCAACCGTTTTGATTGTATTGGAAAGAACTATAGGGAATATTTTCTCTAATCAACTTTGTTTATGCTATTGGGAAGAATTAAAATCATGTTGTGTACCTTGACTTTTAACTTTTCTAATTGACGCCAGAGCAAGTGGGACCTCACAGGATTACCCCTTCATGTTATTTGATTTACTTATTTGCTTGTTTCTGGGTTTATTGCTTATTCTACTTCCATATCTCTCATCTGCCGTTTGAATGACTACTATGTCTTATTGGCATTTCTAGATGATACTTTTCCATCTAACTTGTTCACAAATGATTAAGGTACTACAACTAGTAGTTGCCAGACTTCAGAAACTCTAACGAGCATGGAATTTCCCAACCTTCGCAGTTTTCGTGTTAATGCTTAAATATTTGTGTTTAAATCCATTAAGTTACATGTCTCCATTTCATATGTCAGGTGGAGAACAATGTTTGGTCTCGCACTTATTCCATCTGTTTTACTTGCAATAGGAATGGTATTTTCTCCCGAAAGTCCTCGGTGGCTCTATCAGGTTTCTCATGAGATCTTTCTTTTCTAGTTTGAAATCTTCATTATGGATATCCTGTCTACAGCTACAATCTATGTCAGAGACTTTTTGTCTTAAACTATCCAATTCTATCTTGCAGCAAGGGAGAATATCTGAAGCTGAGACATCTATTAAAAGGCTATATGGTAAAGAAAAAGTTGCTGAGGTTATGGGTGATTTGGAAGCTTCTGCCCAGGGTTCTTCAGAACCAGATGCTGGGTGGCTTGATCTATTTA</genome_strand>
        <mrna_strand>ACACTGTTATACAAG....................................................................................................................................................................................................................................................................GATGGATTGTTAGCACAGTTCTTGCTGGTGCCTTTGTTGGTTCATTTACTGGTGGAGCTCTGGCTGATAAATTTGGCCGAACAAAGACATTTATATTGGATGCAATTCCACTTTCAGTTGGTGCGTTTCTATG...................................................................................TACCACTGCCCAGAGTGTTCAGGCTATGATCATTGGACGCTTACTTACTGGAATTGGCATTGGCATCTCATCTGCTATTGTGCCACTTTACATATCTGAG.................................................................................................ATCTCACCCACGGAAATTCGCGGCACACTGGGAACGGTCAATCAGCTATTCATTTGCATTGGAATTCTTGTTGCACTAGTGGCTGGATTGCCTTTGTCTGGAAATCCTTCATG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAATGGTATTTTCTCCCGAAAGTCCTCGGTGGCTCTATCAG...................................................................................................................CAAGGGAGAATATCTGAAGCTGAGACATCTATTAAAAGGCTATATGGTAAAGAAAAAGTTGCTGAGGTTATGGGTGATTTGGAAGCTTCTGCCCAGGGTTCTTCANAACCAGATGCTGGGTGGCTTGATCTATTTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0010E18-vqLN4/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E700951" ref_strand="+" ref_description="SGN-E700951 [FA14CE04]">
      <seq>cttgcaataggaatggtattttctcccgaaagtcctcggtggctctatcagcaagggagaatatctgaagctgagacatctattaaaaggctatatggtaaagaaaaagttgctgaggttatgggtgatttggaagcttctgcccagggttcttcagaaccagatgctgggtggcttgatctatttagtagccgttataggaaagttgttagcattggtgcagctatgttctttttgcagcagttggctgggataaatgcagttgtctattattccactgccgtgttccgaagcgctggaattacatctgatgtagcagccagtgctctggttggagcagccaacgtctttgggacaacggtggcatcctctttgatggacaaacaaggaaggaagagtctcttgctcataagctatactggaatggctgcatcaatgatgttgctttccttgtcattcacttggaaggtcctgactccatattctggcacactggctgttcttggtactgtcctctatgtgttgtccttttcacttggtgctggtcctgtgcctgctcttctacttccagaaatatttgcttccagaattagggcaaaagcagtggctctctctttgggggtacattggataatgaacttctttattggcctgtacttcttgagcattgtaactaaatttggtatcagtacggtgtacatgggatttgcactctcttgtcttgttgctgtcgtatatataactggtaacgtcgtggagaccaaggggcggtcact</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0010E18-vqLN4/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02SLe0010E18.1" temp_strand="+" temp_description="C02SLe0010E18.1  AC215443.1 htgs_phase:3 submitted_to_sgn_as:C02SLe0010E18 sequenced_by:kribb upload_account_name:korea">
        <position start="87813" stop="91923"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="88113" g_stop="88163" g_length="51"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="51" r_length="51" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="88164" i_stop="88278" i_length="115">
            <donor d_prob="0.923" d_score="1.00"/>
            <acceptor a_prob="0.906" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="88279" g_stop="88432" g_length="154"/>
          <reference_exon_boundary r_type="cDNA" r_start="52" r_stop="205" r_length="154" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="88433" i_stop="89308" i_length="876">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="0.989" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="89309" g_stop="89455" g_length="147"/>
          <reference_exon_boundary r_type="cDNA" r_start="206" r_stop="352" r_length="147" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="89456" i_stop="89534" i_length="79">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="89535" g_stop="89608" g_length="74"/>
          <reference_exon_boundary r_type="cDNA" r_start="353" r_stop="426" r_length="74" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="89609" i_stop="90609" i_length="1001">
            <donor d_prob="0.986" d_score="1.00"/>
            <acceptor a_prob="0.987" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="90610" g_stop="90698" g_length="89"/>
          <reference_exon_boundary r_type="cDNA" r_start="427" r_stop="515" r_length="89" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="90699" i_stop="90868" i_length="170">
            <donor d_prob="0.991" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="90869" g_stop="90983" g_length="115"/>
          <reference_exon_boundary r_type="cDNA" r_start="516" r_stop="630" r_length="115" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="90984" i_stop="91477" i_length="494">
            <donor d_prob="0.140" d_score="1.00"/>
            <acceptor a_prob="0.664" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="91478" g_stop="91623" g_length="146"/>
          <reference_exon_boundary r_type="cDNA" r_start="631" r_stop="776" r_length="146" r_score="0.993"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLe0010E18.1" gen_strand="+" ref_id="SGN-E700951" ref_strand="+">
        <total_alignment_score>0.999</total_alignment_score>
        <cumulative_length_of_scored_exons>776</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0010E18.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E700951" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="88113" e_stop="88163"/>
          <exon e_start="88279" e_stop="88432"/>
          <exon e_start="89309" e_stop="89455"/>
          <exon e_start="89535" e_stop="89608"/>
          <exon e_start="90610" e_stop="90698"/>
          <exon e_start="90869" e_stop="90983"/>
          <exon e_start="91478" e_stop="91623"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTTGCAATAGGAATGGTATTTTCTCCCGAAAGTCCTCGGTGGCTCTATCAGGTTTCTCATGAGATCTTTCTTTTCTAGTTTGAAATCTTCATTATGGATATCCTGTCTACAGCTACAATCTATGTCAGAGACTTTTTGTCTTAAACTATCCAATTCTATCTTGCAGCAAGGGAGAATATCTGAAGCTGAGACATCTATTAAAAGGCTATATGGTAAAGAAAAAGTTGCTGAGGTTATGGGTGATTTGGAAGCTTCTGCCCAGGGTTCTTCAGAACCAGATGCTGGGTGGCTTGATCTATTTAGTAGCCGTTATAGGAAAGGTATATCTTTGATCATCAGTATTCTAGATAATAAATATTGATGATGCATGTCTTATGCGTCTAAAGCTCAGTTCTTATATCCTTAGGTCCAACACTTCCCTATATATTGTTTAAGAACAAATTTAAATTTCTTTTCCTTTGGGTGTTATCATACGCCATCATTATTAGGAATTTCGGATAGTGGTGTGTAGTTTTGCTCTTGCTGCAATAAAGAAAATCATGTCAATTATTTTCCTTAAGTTCCAAAATCTTGATAATCACCAAAGCATAGAGTTTTGTCTGGTACGTGTTCCCATTTTACTTTTTAATCAACTTTGTTTGTTATTATTATTCTTTATTTTTTTATTGGTCCAAATACGTAGAACAATGAGAGATACTTTGAAGATAAGTTAAGTCCATTCATGATGTGAAATGGAATTGCATAGTTTCTCTATTTTTTGGTGTAAAGAGAATTGTATAGAGGAAGTAGATGATCTTATAGATTTTTAACGTATTGTAAATCTAGAGTCCATATCTTTCTGTAAAAAATTTTTGGAGCCAGGCCAGCATATCCTTAATGCTGAGGACAGCATACCCTTAATGTTGAGGATTATAATAGTACCAATTTCAAATAAATAAATAAATTTGTAACCTTCATAATTTTCCTGCTTGGAAGAGAACTGTTACTTACAATTTAATTTGCTCTACAAATAATAAAAGCCTGTCTGATTTTTGCTTGTGAGCACATATTTCTCTACTTGAGTGTTTTCTTAATATGCTATTATCAGTCTATGGTCACTCATTCCATCATTCCAAATATATGTGATATTTTGAGCTCCTGATATTTCTGTACCATGTTGTACAACCAAAATGGTCTAATTGTTGTCGTCATTGCAGTTGTTAGCATTGGTGCAGCTATGTTCTTTTTGCAGCAGTTGGCTGGGATAAATGCAGTTGTCTATTATTCCACTGCCGTGTTCCGAAGCGCTGGAATTACATCTGATGTAGCAGCCAGTGCTCTGGTTGGAGCAGCCAACGTCTTTGGTTAGTTTTCTCCTCAAGGTTTTTGGTAACATCTATGGCTATAGAATATATTTTACTAATTGTATACGTATTCATCCAGGGACAACGGTGGCATCCTCTTTGATGGACAAACAAGGAAGGAAGAGTCTCTTGCTCATAAGCTATACTGGAATGGTAAGTCATTTTTAGTCCTAGATGGAGTTTACTATGTCGAAGAAAATTTACAACTTGCAACTGAATTGAGGTTAATCCTTTGAGAAATATGTGATATTTTCACTTTTAGGTGATTAATTACACATATGTATTCTATTTGAAGGTTTTAGTAGGCATTTGGATGCACAAACACATGTATATGCATATGAAAAGACAGCAAAATATTCATGGGAAAAGAAACAAGCAAATATATGCTTGTTAAATGACCTTGTATTTCCAGAAATTCTATCTATCTCTAGCACTAGCAAGTAGCAAAGCCATATCCTGTTATAATGTGATGCAAATCATTTACGCAGTAGAGATTGAAAACCTAAACCTTGCCTAGAGCAATACCTTAAAATCACTTGCTTGAAGGTTAGCGTAGATGAATATTACAAAGGTTGATCACTTTCTATGTTAAAATTTTCCAAATGAAGTGATTTTCTGAGAATTTGTGAAACTTTCTGAAGAGTACTTTTGGAAAAAATTCCATTCAATAATTATTATTACAGAAGATCATTTCTGGAAAAGTTTAAGTATCTTTTATCATTTAGACAAGTTTCATTATGAAAAAATCAAATTAGGGAGTGTGTGTAATATCTAAACCAGATGTAATATCTAAACCAGAAGAGAAGTTAGTGGTATAAAGGTAAATTTGAAGGGAGTTCTTTGAAATATTCCCCAACTATAATCATCAAGCAGAGAGAATTCCAACATGAAGCTCTTTGGGATAGCTTGCCTGAGACTTTCACCATCTTATCCTAATTATCTTTGGCAGTTGAACTCATGCTCTTATGCATCCAGTTGCATCCAGTTGTCAATGCTTAGATGGTCCCTTAGCTGCAACCCAGGCATGCGTATGATGAGCCTGAGGGCACATTATGTGTTTATTGTCCTGATTTTTGGCTTGTTTCCGACTTGATATATTTTTAGCTTGTTCTATCCATTTTGTTTCCGATTCTCATCGTATTCTCTTTTCACAGGCTGCATCAATGATGTTGCTTTCCTTGTCATTCACTTGGAAGGTCCTGACTCCATATTCTGGCACACTGGCTGTTCTTGGTACTGTCCTGTAAGTATCACGTGCTTCCCTGCTGGTTGGATCGTTACTTCCTTTTTTCCACCGAAGCAATTTCTTCCGTTTAGGCCAGCTTCTTTTTCACCTATGTCAATGCAAATGATTTTTTTTTGTAACAAATTGAATGAAATATATATATTTTCTGGCTACGTTTTTGTCTGCAGCTATGTGTTGTCCTTTTCACTTGGTGCTGGTCCTGTGCCTGCTCTTCTACTTCCAGAAATATTTGCTTCCAGAATTAGGGCAAAAGCAGTGGCTCTCTCTTTGGGGGTACATTGGGTGAGTTTGCGCTTGGAAACCGTAGTACCCTTTTTGCTGCTAACTGTCTATGTTTCCTTGCTTTTTTTTTTTTTGGGTGGGGGTGGGGGGTGGGGGGTGGGGAAGGAATAAAAGGCTATAACTACATCATTTATGGCGTTCCATGATTAACTGGAAGCAAACTGTTATGCCAAATTCCTAAAATCGCAATAAGCTGAAATGTGTGCTGACAGAATATGCTCATATGTCTTTTGAGCATGTTTCTCAATGCCACGCCTCTTGGGTAACATGACATGTGAGGGTGCTCATATTGTTTACTTCTTTTGTTTGAGAAGTATTTTTTGCTTTTGATTGGTACTATGTTCCCGGCATGAGCTTTAGAAAGATAACTATGAAAAGGTAGGAATTGATTTATTGCCCTTCATTGTGGTGGTATTTGCAGCACTGTGAGATTAATTGAAGGCTCATTCACTCCATGTTTACTTTGTTTCTAACTCGTATTTCTCCTTGAACAGATAATGAACTTCTTTATTGGCCTGTACTTCTTGAGCATTGTAACTAAATTTGGTATCAGTACGGTGTACATGGGATTTGCACTCTCTTGTCTTGTTGCTGTCGTATATATAACTGGTAACGTCGTGGAGACAAAGGGGCGGTCACT</genome_strand>
        <mrna_strand>CTTGCAATAGGAATGGTATTTTCTCCCGAAAGTCCTCGGTGGCTCTATCAG...................................................................................................................CAAGGGAGAATATCTGAAGCTGAGACATCTATTAAAAGGCTATATGGTAAAGAAAAAGTTGCTGAGGTTATGGGTGATTTGGAAGCTTCTGCCCAGGGTTCTTCAGAACCAGATGCTGGGTGGCTTGATCTATTTAGTAGCCGTTATAGGAAAG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTGTTAGCATTGGTGCAGCTATGTTCTTTTTGCAGCAGTTGGCTGGGATAAATGCAGTTGTCTATTATTCCACTGCCGTGTTCCGAAGCGCTGGAATTACATCTGATGTAGCAGCCAGTGCTCTGGTTGGAGCAGCCAACGTCTTTG...............................................................................GGACAACGGTGGCATCCTCTTTGATGGACAAACAAGGAAGGAAGAGTCTCTTGCTCATAAGCTATACTGGAATG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCTGCATCAATGATGTTGCTTTCCTTGTCATTCACTTGGAAGGTCCTGACTCCATATTCTGGCACACTGGCTGTTCTTGGTACTGTCCT..........................................................................................................................................................................CTATGTGTTGTCCTTTTCACTTGGTGCTGGTCCTGTGCCTGCTCTTCTACTTCCAGAAATATTTGCTTCCAGAATTAGGGCAAAAGCAGTGGCTCTCTCTTTGGGGGTACATTGG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATAATGAACTTCTTTATTGGCCTGTACTTCTTGAGCATTGTAACTAAATTTGGTATCAGTACGGTGTACATGGGATTTGCACTCTCTTGTCTTGTTGCTGTCGTATATATAACTGGTAACGTCGTGGAGACCAAGGGGCGGTCACT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0010E18-vqLN4/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E337065" ref_strand="+" ref_description="SGN-E337065 [cTOE-7-K13]">
      <seq>gaatggctgcatcaatgatgttgctttccttgtcattcacttggaaggtcctgactccatattctggcacactggctgttcttggtactgtcctctatgtgttgtccttttcacttggtgctggtcctgtgcctgctcttctacttccagaaatatttgcttccagaattagggcaaaagcagtggctctctctttgggggtacattggataatgaacttctttattggcctgtacttcttgagcattgtaactaaatttggtatcagtacggtgtacatgggatttgcactctcttgtcttgttgctgtcgtatatataactggtaacgtcgtggagacaaaggggcggtcactggaggagatagaacgtgagttaagtccagcaatttgagtggtaccgcatgaacagctgagagtaatttcagcttccgccttccagtgggtctggattttgaagagattctccgggtcctgactggagttgtatcacttaccttcagctatctctttgattttcttacacaccggcttcatgaatcatgggacattgtaaaaacatg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0010E18-vqLN4/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02SLe0010E18.1" temp_strand="+" temp_description="C02SLe0010E18.1  AC215443.1 htgs_phase:3 submitted_to_sgn_as:C02SLe0010E18 sequenced_by:kribb upload_account_name:korea">
        <position start="90309" stop="92129"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="90610" g_stop="90698" g_length="89"/>
          <reference_exon_boundary r_type="cDNA" r_start="6" r_stop="94" r_length="89" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="90699" i_stop="90868" i_length="170">
            <donor d_prob="0.991" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="90869" g_stop="90983" g_length="115"/>
          <reference_exon_boundary r_type="cDNA" r_start="95" r_stop="209" r_length="115" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="90984" i_stop="91477" i_length="494">
            <donor d_prob="0.140" d_score="1.00"/>
            <acceptor a_prob="0.664" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="91478" g_stop="91829" g_length="352"/>
          <reference_exon_boundary r_type="cDNA" r_start="210" r_stop="561" r_length="352" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLe0010E18.1" gen_strand="+" ref_id="SGN-E337065" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>556</cumulative_length_of_scored_exons>
        <coverage percentage="0.991" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0010E18.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E337065" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="90610" e_stop="90698"/>
          <exon e_start="90869" e_stop="90983"/>
          <exon e_start="91478" e_stop="91829"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCTGCATCAATGATGTTGCTTTCCTTGTCATTCACTTGGAAGGTCCTGACTCCATATTCTGGCACACTGGCTGTTCTTGGTACTGTCCTGTAAGTATCACGTGCTTCCCTGCTGGTTGGATCGTTACTTCCTTTTTTCCACCGAAGCAATTTCTTCCGTTTAGGCCAGCTTCTTTTTCACCTATGTCAATGCAAATGATTTTTTTTTGTAACAAATTGAATGAAATATATATATTTTCTGGCTACGTTTTTGTCTGCAGCTATGTGTTGTCCTTTTCACTTGGTGCTGGTCCTGTGCCTGCTCTTCTACTTCCAGAAATATTTGCTTCCAGAATTAGGGCAAAAGCAGTGGCTCTCTCTTTGGGGGTACATTGGGTGAGTTTGCGCTTGGAAACCGTAGTACCCTTTTTGCTGCTAACTGTCTATGTTTCCTTGCTTTTTTTTTTTTTGGGTGGGGGTGGGGGGTGGGGGGTGGGGAAGGAATAAAAGGCTATAACTACATCATTTATGGCGTTCCATGATTAACTGGAAGCAAACTGTTATGCCAAATTCCTAAAATCGCAATAAGCTGAAATGTGTGCTGACAGAATATGCTCATATGTCTTTTGAGCATGTTTCTCAATGCCACGCCTCTTGGGTAACATGACATGTGAGGGTGCTCATATTGTTTACTTCTTTTGTTTGAGAAGTATTTTTTGCTTTTGATTGGTACTATGTTCCCGGCATGAGCTTTAGAAAGATAACTATGAAAAGGTAGGAATTGATTTATTGCCCTTCATTGTGGTGGTATTTGCAGCACTGTGAGATTAATTGAAGGCTCATTCACTCCATGTTTACTTTGTTTCTAACTCGTATTTCTCCTTGAACAGATAATGAACTTCTTTATTGGCCTGTACTTCTTGAGCATTGTAACTAAATTTGGTATCAGTACGGTGTACATGGGATTTGCACTCTCTTGTCTTGTTGCTGTCGTATATATAACTGGTAACGTCGTGGAGACAAAGGGGCGGTCACTGGAGGAGATAGAACGTGAGTTAAGTCCAGCAATTTGAGTGGTACCGCATGAACAGCTGAGAGTAATTTCAGCTTCCGCCTTCCAGTGGGTCTGGATTTTGAAGAGATTCTCCGGGTCCTGACTGGAGTTGTATCACTTACCTTCAGCTATCTCTTTGATTTTCTTACACACCGGCTTCATGAATCATGGGACATTGTAAAAACATG</genome_strand>
        <mrna_strand>GCTGCATCAATGATGTTGCTTTCCTTGTCATTCACTTGGAAGGTCCTGACTCCATATTCTGGCACACTGGCTGTTCTTGGTACTGTCCT..........................................................................................................................................................................CTATGTGTTGTCCTTTTCACTTGGTGCTGGTCCTGTGCCTGCTCTTCTACTTCCAGAAATATTTGCTTCCAGAATTAGGGCAAAAGCAGTGGCTCTCTCTTTGGGGGTACATTGG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATAATGAACTTCTTTATTGGCCTGTACTTCTTGAGCATTGTAACTAAATTTGGTATCAGTACGGTGTACATGGGATTTGCACTCTCTTGTCTTGTTGCTGTCGTATATATAACTGGTAACGTCGTGGAGACAAAGGGGCGGTCACTGGAGGAGATAGAACGTGAGTTAAGTCCAGCAATTTGAGTGGTACCGCATGAACAGCTGAGAGTAATTTCAGCTTCCGCCTTCCAGTGGGTCTGGATTTTGAAGAGATTCTCCGGGTCCTGACTGGAGTTGTATCACTTACCTTCAGCTATCTCTTTGATTTTCTTACACACCGGCTTCATGAATCATGGGACATTGTAAAAACATG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0010E18-vqLN4/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E283400" ref_strand="-" ref_description="SGN-E283400 [cLER-12-K4]">
      <seq>cttccagaaatatttgcttccagaattagggcaaaagcagtggctctctctttgggggtacattggataatgaacttctttattggcctgtacttcttgagcattgtaactaaatttggtatcagtacggtgtacatgggatttgcactctcttgtcttgttgctgtcgtatatataactggtaacgtcgtggagacaaaggggcggtcactggaggagatagaacgtgagttaagtccagcaatttgagtggtaccgcatgaacagctgagagtaatttcagcttccgccttccagtgggtctggattttgaagagattctccgggtcctgactggagttgtatcacttaccttcagctatctctttgattttcttacacaccggcttcatgaatcatgggacattgtaaaaacatgcaactgttatggaagatgatccgcgtataattgagtatttcggaactcaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0010E18-vqLN4/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02SLe0010E18.1" temp_strand="+" temp_description="C02SLe0010E18.1  AC215443.1 htgs_phase:3 submitted_to_sgn_as:C02SLe0010E18 sequenced_by:kribb upload_account_name:korea">
        <position start="90618" stop="92178"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="90918" g_stop="90983" g_length="66"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="66" r_length="66" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="90984" i_stop="91477" i_length="494">
            <donor d_prob="0.140" d_score="1.00"/>
            <acceptor a_prob="0.664" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="91478" g_stop="91888" g_length="411"/>
          <reference_exon_boundary r_type="cDNA" r_start="67" r_stop="477" r_length="411" r_score="0.978"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLe0010E18.1" gen_strand="+" ref_id="SGN-E283400" ref_strand="-">
        <total_alignment_score>0.981</total_alignment_score>
        <cumulative_length_of_scored_exons>477</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0010E18.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E283400" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="90918" e_stop="90983"/>
          <exon e_start="91478" e_stop="91888"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTTCCAGAAATATTTGCTTCCAGAATTAGGGCAAAAGCAGTGGCTCTCTCTTTGGGGGTACATTGGGTGAGTTTGCGCTTGGAAACCGTAGTACCCTTTTTGCTGCTAACTGTCTATGTTTCCTTGCTTTTTTTTTTTTTGGGTGGGGGTGGGGGGTGGGGGGTGGGGAAGGAATAAAAGGCTATAACTACATCATTTATGGCGTTCCATGATTAACTGGAAGCAAACTGTTATGCCAAATTCCTAAAATCGCAATAAGCTGAAATGTGTGCTGACAGAATATGCTCATATGTCTTTTGAGCATGTTTCTCAATGCCACGCCTCTTGGGTAACATGACATGTGAGGGTGCTCATATTGTTTACTTCTTTTGTTTGAGAAGTATTTTTTGCTTTTGATTGGTACTATGTTCCCGGCATGAGCTTTAGAAAGATAACTATGAAAAGGTAGGAATTGATTTATTGCCCTTCATTGTGGTGGTATTTGCAGCACTGTGAGATTAATTGAAGGCTCATTCACTCCATGTTTACTTTGTTTCTAACTCGTATTTCTCCTTGAACAGATAATGAACTTCTTTATTGGCCTGTACTTCTTGAGCATTGTAACTAAATTTGGTATCAGTACGGTGTACATGGGATTTGCACTCTCTTGTCTTGTTGCTGTCGTATATATAACTGGTAACGTCGTGGAGACAAAGGGGCGGTCACTGGAGGAGATAGAACGTGAGTTAAGTCCAGCAATTTGAGTGGTACCGCATGAACAGCTGAGAGTAATTTCAGCTTCCGCCTTCCAGTGGGTCTGGATTTTGAAGAGATTCTCCGGGTCCTGACTGGAGTTGTATCACTTACCTTCAGCTATCTCTTTGATTTTCTTACACACCGGCTTCATGAATCATGGGACATTGTAAAAACATGCAACTGTTATGGAAGATGATCCGCGTATAATTGAGTATTTCGGAACTCATCTTCAGCTG</genome_strand>
        <mrna_strand>CTTCCAGAAATATTTGCTTCCAGAATTAGGGCAAAAGCAGTGGCTCTCTCTTTGGGGGTACATTGG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATAATGAACTTCTTTATTGGCCTGTACTTCTTGAGCATTGTAACTAAATTTGGTATCAGTACGGTGTACATGGGATTTGCACTCTCTTGTCTTGTTGCTGTCGTATATATAACTGGTAACGTCGTGGAGACAAAGGGGCGGTCACTGGAGGAGATAGAACGTGAGTTAAGTCCAGCAATTTGAGTGGTACCGCATGAACAGCTGAGAGTAATTTCAGCTTCCGCCTTCCAGTGGGTCTGGATTTTGAAGAGATTCTCCGGGTCCTGACTGGAGTTGTATCACTTACCTTCAGCTATCTCTTTGATTTTCTTACACACCGGCTTCATGAATCATGGGACATTGTAAAAACATGCAACTGTTATGGAAGATGATCCGCGTATAATTGAGTATTTCGGAACTCAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0010E18-vqLN4/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E347531" ref_strand="+" ref_description="SGN-E347531 [cTOF-26-G15]">
      <seq>gacgacgggaggagagaagctgcgatagcatcagtaccatctctacaacccaatttcaccaataaaaatggtgtcaacaatgctcaagtttccaaatttcaagagttgcatcgaagacgcttaaaaataaaagcaaaatctaaggtcaaggataaaacgaaaggaactgttgtctccactaaaaagtataatggtgaagatgtcaatgctaaatgcaaggcaatcatggatgaaaaatcaatagaaacagctaaagatgtgagaattactttgtcaataagcagtacaacagacctttcatcctctcaagaagacaacacattgtcaaaaaagcggcagaagttgcattgggggctcgacaccaaggagagatgggaaaggaaatccaatatgtagagatatcagcatctgaatatggaatgcttctatcttgcccttttacttatgaggagatactaagtctcgggctcaggcgtgtagagcaaaccaaccaattactgataaataacccttttacttgtaaatgtatttgttaagtagtactaatatcaatttactacggttaagtgatttaattaattattatatatatgaattctcaatgatagttatatatttattgatgatttggcgt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0010E18-vqLN4/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02SLe0010E18.1" temp_strand="-" temp_description="C02SLe0010E18.1  AC215443.1 htgs_phase:3 submitted_to_sgn_as:C02SLe0010E18 sequenced_by:kribb upload_account_name:korea">
        <position start="94762" stop="91742"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="94462" g_stop="94361" g_length="102"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="102" r_length="102" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="94360" i_stop="92893" i_length="1468">
            <donor d_prob="0.993" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="92892" g_stop="92832" g_length="61"/>
          <reference_exon_boundary r_type="cDNA" r_start="103" r_stop="163" r_length="61" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="92831" i_stop="92707" i_length="125">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="92706" g_stop="92517" g_length="190"/>
          <reference_exon_boundary r_type="cDNA" r_start="164" r_stop="353" r_length="190" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="92516" i_stop="92323" i_length="194">
            <donor d_prob="0.952" d_score="1.00"/>
            <acceptor a_prob="0.989" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="92322" g_stop="92042" g_length="281"/>
          <reference_exon_boundary r_type="cDNA" r_start="354" r_stop="634" r_length="281" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLe0010E18.1" gen_strand="-" ref_id="SGN-E347531" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>634</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0010E18.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E347531" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="94462" e_stop="94361"/>
          <exon e_start="92892" e_stop="92832"/>
          <exon e_start="92706" e_stop="92517"/>
          <exon e_start="92322" e_stop="92042"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GACGACGGGAGGAGAGAAGCTGCGATAGCATCAGTACCATCTCTACAACCCAATTTCACCAATAAAAATGGTGTCAACAATGCTCAAGTTTCCAAATTTCAAGTAATCTCTTTCTCGCCTTATTTCATACGTTTATAGAACCTAGTTTTCTTCTTGTTTTTCATTCATAAATAAAGGTAAACAAAATTTCTCTATCTAATGAAGTAGCAGTAATTATGATACTTTGAGTTTAGGAAATGGAATGAAATTCTCCGGAATAGAGCAAAATGATTATAGAGGATTTGTTATATGAGAGTTTTGGATCTCCCAGTTGTTGCACTAGTGACCTACATTCATAGAGCTATACTAAGATTTATCGCTGATAAAATTTATTGAGTCTTTGGAGATTTCTAGAGTCATCAATTCGAATAACAGTTAATAATTTTGTGAGAGTTTTAGTACTATTCTGGAATATCCTTCGTGAAGCCTAGCATCCGATCACCTCTATTATTACATATAACTCCCCTACATTACCTTGTACACCAGGGCTATCTATGGAAGAACAATCAATATTGAGATTGAGGCGTAGTTGATTGAATATGTCGAGGAAAACCAAGAATTGTAATTGGTAGTTTATCCAAGCTATATTAGAGGTTAAGGTGTGTGAGTTTTCGAGTGGAGTTGTAAAGCAATATACTTTGTGGTGCTTTTCAAGGATGTTTGGTTGGTTCTAACAAATAACCTTTGTGGTTGGGTGAATTGGTAATTTCTAACTAATATCATCGATTCATTGTAGGTTGATGTCTTCTGTCGTTGACATCAACCTACAATGAAAAAGCATAGCACACCACATACCATGTGACTTTCTAGCCTATGATTCAGCAAGCAACCCAAACTGTGGATCCTTACAAACCACATGTATATTCGAAAGGATGCTGAGCTATCAGTGTCATATGTTCCACATGTCCAATGTACACGTTTCCTAACAGTAATATCTAAAGCATGAGTTACAAGTTGGAAAACATTGAGTTGTTATTCCGAGAACACTAGAATTAATTGAAGGGCATCTGCCTCACGTAAGAAGTATTAGGTCCACCCGTGCACACTATTATTTACAAGCTTTATGTAACACGTCCAGTTAAGTATTTGCGAGCTTTTTCAGAATATGTAACTATGTAAAAACATGTCATGTTATTATGCTTAGAATGGTATGAGTAGCAGTTGGGCACTTTTACAGTTCTCAATCTTTATCCACGTATATGTTGATGTTTCAATCTGTGATCCCTTAAACATTTTCTAGAAGTCTTGGAGTAAAGGTTGCTTTAATTTTGGACTGTATAGTTGGATACATAGTTACGAGATGGTAAAATCGGTTTCAAAACTTAGAATACTGAGGTATAGGCTAGCAACAACATTGATTATATGTTAGACAAAGGAAATTCAAAACTTGCTTGCTGAGCTACGGGTTGGGGACTACATTTATTGAGTTTATGACATTCGGATATATAGATATGTGTGCTTAGTTGTTTTAGCTTTTTCTTCTTAGTTTGTCTGGATTGATTTTTCAATATCATGTTCTTTGGTTTGCCAGGAGTTGCATCGAAGACGCTTAAAAATAAAAGCAAAATCTAAGGTCAAGGATAAAACGAAAGGTATGTAGTTTGATTCTTCAGCACTCTGTTTACATTTTCAATGATTCTTTTCCTTTTTTGTATTGTTTACTTTTTCTATTGGAAGTGAATTTCTAGTTAACATTTTGATGAGGAGAGGTTTTCAGGAACTGTTGTCTCCACTAAAAAGTATAATGGTGAAGATGTCAATGCTAAATGCAAGGCAATCATGGATGAAAAATCAATAGAAACAGCTAAAGATGTGAGAATTACTTTGTCAATAAGCAGTACAACAGACCTTTCATCCTCTCAAGAAGACAACACATTGTCAAAAAAGCGGCAGAAGTTGCATTGGGGGTATGACCTTTCAAAATGTTGGCAATCATTATTTTTAGAAAAAACTATTAGATTGTGTCCCCCATCTAGAAAAAAAAGAGTAGGCTCAAGCACCTTTAGTGTTGTATTTGGTTGGTTATGTTTCTTTCTTTCTGATATTTTGATTTTGCATACCGTATGTTCTTATGAATCGTGCACTTCTCTACCTACTGTAGGCTCGACACCAAGGAGAGATGGGAAAGGAAATCCAATATGTAGAGATATCAGCATCTGAATATGGAATGCTTCTATCTTGCCCTTTTACTTATGAGGAGATACTAAGTCTCGGGCTCAGGCGTGTAGAGCAAACCAACCAATTACTGATAAATAACCCTTTTACTTGTAAATGTATTTGTTAAGTAGTACTAATATCAATTTACTACGGTTAAGTGATTTAATTAATTATTATATATATGAATTCTCAATGATAGTTATATATTTATTGATGATTTGGCGT</genome_strand>
        <mrna_strand>GACGACGGGAGGAGAGAAGCTGCGATAGCATCAGTACCATCTCTACAACCCAATTTCACCAATAAAAATGGTGTCAACAATGCTCAAGTTTCCAAATTTCAA............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAGTTGCATCGAAGACGCTTAAAAATAAAAGCAAAATCTAAGGTCAAGGATAAAACGAAAG.............................................................................................................................GAACTGTTGTCTCCACTAAAAAGTATAATGGTGAAGATGTCAATGCTAAATGCAAGGCAATCATGGATGAAAAATCAATAGAAACAGCTAAAGATGTGAGAATTACTTTGTCAATAAGCAGTACAACAGACCTTTCATCCTCTCAAGAAGACAACACATTGTCAAAAAAGCGGCAGAAGTTGCATTGGGG..................................................................................................................................................................................................GCTCGACACCAAGGAGAGATGGGAAAGGAAATCCAATATGTAGAGATATCAGCATCTGAATATGGAATGCTTCTATCTTGCCCTTTTACTTATGAGGAGATACTAAGTCTCGGGCTCAGGCGTGTAGAGCAAACCAACCAATTACTGATAAATAACCCTTTTACTTGTAAATGTATTTGTTAAGTAGTACTAATATCAATTTACTACGGTTAAGTGATTTAATTAATTATTATATATATGAATTCTCAATGATAGTTATATATTTATTGATGATTTGGCGT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0010E18-vqLN4/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E296476" ref_strand="+" ref_description="SGN-E296476 [cLET-19-P3]">
      <seq>tcgggtctggagctgtttcaatggaagaggacgacgggaggagagaagctgcgatagcatcagtaccatctctacaacccaatttcaccaataaaaatggtgtcaacaatgctcaagtttccaaatttcaagagttgcatcgaagacgcttaaaaataaaagcaaaatctaaggtcaaggataaaacgaaaggaactgttgtctccactaaaaagtataatggtgaagatgtcaatgctaaatgcaaggcaatcatggatgaaaaatcaatagaaacagctaaagatgtgagaattactttgtcaataagcagtacaacagacctttcatcctctcaagaagacaacacattgtcaaaaaagcggcagaagttgcattgggggctcgacaccaaggagagatgggaaaggaaatccaatatgtagagatatcagcatctgaatatggaatgcttctatcttgcccttttacttatgaggagatactaagtctcgggctcaggcgtgtagagcaaaccaaccaattactgataaataacccttttacttgtaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0010E18-vqLN4/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02SLe0010E18.1" temp_strand="-" temp_description="C02SLe0010E18.1  AC215443.1 htgs_phase:3 submitted_to_sgn_as:C02SLe0010E18 sequenced_by:kribb upload_account_name:korea">
        <position start="94791" stop="91852"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="94491" g_stop="94361" g_length="131"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="131" r_length="131" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="94360" i_stop="92893" i_length="1468">
            <donor d_prob="0.993" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="92892" g_stop="92832" g_length="61"/>
          <reference_exon_boundary r_type="cDNA" r_start="132" r_stop="192" r_length="61" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="92831" i_stop="92707" i_length="125">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="92706" g_stop="92517" g_length="190"/>
          <reference_exon_boundary r_type="cDNA" r_start="193" r_stop="382" r_length="190" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="92516" i_stop="92323" i_length="194">
            <donor d_prob="0.952" d_score="1.00"/>
            <acceptor a_prob="0.989" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="92322" g_stop="92145" g_length="178"/>
          <reference_exon_boundary r_type="cDNA" r_start="383" r_stop="560" r_length="178" r_score="0.966"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLe0010E18.1" gen_strand="-" ref_id="SGN-E296476" ref_strand="+">
        <total_alignment_score>0.989</total_alignment_score>
        <cumulative_length_of_scored_exons>560</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0010E18.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E296476" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="94491" e_stop="94361"/>
          <exon e_start="92892" e_stop="92832"/>
          <exon e_start="92706" e_stop="92517"/>
          <exon e_start="92322" e_stop="92145"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCGGGTCTGGAGCTGTTTCAATGGAAGAGGACGACGGGAGGAGAGAAGCTGCGATAGCATCAGTACCATCTCTACAACCCAATTTCACCAATAAAAATGGTGTCAACAATGCTCAAGTTTCCAAATTTCAAGTAATCTCTTTCTCGCCTTATTTCATACGTTTATAGAACCTAGTTTTCTTCTTGTTTTTCATTCATAAATAAAGGTAAACAAAATTTCTCTATCTAATGAAGTAGCAGTAATTATGATACTTTGAGTTTAGGAAATGGAATGAAATTCTCCGGAATAGAGCAAAATGATTATAGAGGATTTGTTATATGAGAGTTTTGGATCTCCCAGTTGTTGCACTAGTGACCTACATTCATAGAGCTATACTAAGATTTATCGCTGATAAAATTTATTGAGTCTTTGGAGATTTCTAGAGTCATCAATTCGAATAACAGTTAATAATTTTGTGAGAGTTTTAGTACTATTCTGGAATATCCTTCGTGAAGCCTAGCATCCGATCACCTCTATTATTACATATAACTCCCCTACATTACCTTGTACACCAGGGCTATCTATGGAAGAACAATCAATATTGAGATTGAGGCGTAGTTGATTGAATATGTCGAGGAAAACCAAGAATTGTAATTGGTAGTTTATCCAAGCTATATTAGAGGTTAAGGTGTGTGAGTTTTCGAGTGGAGTTGTAAAGCAATATACTTTGTGGTGCTTTTCAAGGATGTTTGGTTGGTTCTAACAAATAACCTTTGTGGTTGGGTGAATTGGTAATTTCTAACTAATATCATCGATTCATTGTAGGTTGATGTCTTCTGTCGTTGACATCAACCTACAATGAAAAAGCATAGCACACCACATACCATGTGACTTTCTAGCCTATGATTCAGCAAGCAACCCAAACTGTGGATCCTTACAAACCACATGTATATTCGAAAGGATGCTGAGCTATCAGTGTCATATGTTCCACATGTCCAATGTACACGTTTCCTAACAGTAATATCTAAAGCATGAGTTACAAGTTGGAAAACATTGAGTTGTTATTCCGAGAACACTAGAATTAATTGAAGGGCATCTGCCTCACGTAAGAAGTATTAGGTCCACCCGTGCACACTATTATTTACAAGCTTTATGTAACACGTCCAGTTAAGTATTTGCGAGCTTTTTCAGAATATGTAACTATGTAAAAACATGTCATGTTATTATGCTTAGAATGGTATGAGTAGCAGTTGGGCACTTTTACAGTTCTCAATCTTTATCCACGTATATGTTGATGTTTCAATCTGTGATCCCTTAAACATTTTCTAGAAGTCTTGGAGTAAAGGTTGCTTTAATTTTGGACTGTATAGTTGGATACATAGTTACGAGATGGTAAAATCGGTTTCAAAACTTAGAATACTGAGGTATAGGCTAGCAACAACATTGATTATATGTTAGACAAAGGAAATTCAAAACTTGCTTGCTGAGCTACGGGTTGGGGACTACATTTATTGAGTTTATGACATTCGGATATATAGATATGTGTGCTTAGTTGTTTTAGCTTTTTCTTCTTAGTTTGTCTGGATTGATTTTTCAATATCATGTTCTTTGGTTTGCCAGGAGTTGCATCGAAGACGCTTAAAAATAAAAGCAAAATCTAAGGTCAAGGATAAAACGAAAGGTATGTAGTTTGATTCTTCAGCACTCTGTTTACATTTTCAATGATTCTTTTCCTTTTTTGTATTGTTTACTTTTTCTATTGGAAGTGAATTTCTAGTTAACATTTTGATGAGGAGAGGTTTTCAGGAACTGTTGTCTCCACTAAAAAGTATAATGGTGAAGATGTCAATGCTAAATGCAAGGCAATCATGGATGAAAAATCAATAGAAACAGCTAAAGATGTGAGAATTACTTTGTCAATAAGCAGTACAACAGACCTTTCATCCTCTCAAGAAGACAACACATTGTCAAAAAAGCGGCAGAAGTTGCATTGGGGGTATGACCTTTCAAAATGTTGGCAATCATTATTTTTAGAAAAAACTATTAGATTGTGTCCCCCATCTAGAAAAAAAAGAGTAGGCTCAAGCACCTTTAGTGTTGTATTTGGTTGGTTATGTTTCTTTCTTTCTGATATTTTGATTTTGCATACCGTATGTTCTTATGAATCGTGCACTTCTCTACCTACTGTAGGCTCGACACCAAGGAGAGATGGGAAAGGAAATCCAATATGTAGAGATATCAGCATCTGAATATGGAATGCTTCTATCTTGCCCTTTTACTTATGAGGAGATACTAAGTCTCGGGCTCAGGCGTGTAGAGCAAACCAACCAATTACTGATAAATAACCCTTTTACTTGTAAATGTATTT</genome_strand>
        <mrna_strand>TCGGGTCTGGAGCTGTTTCAATGGAAGAGGACGACGGGAGGAGAGAAGCTGCGATAGCATCAGTACCATCTCTACAACCCAATTTCACCAATAAAAATGGTGTCAACAATGCTCAAGTTTCCAAATTTCAA............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAGTTGCATCGAAGACGCTTAAAAATAAAAGCAAAATCTAAGGTCAAGGATAAAACGAAAG.............................................................................................................................GAACTGTTGTCTCCACTAAAAAGTATAATGGTGAAGATGTCAATGCTAAATGCAAGGCAATCATGGATGAAAAATCAATAGAAACAGCTAAAGATGTGAGAATTACTTTGTCAATAAGCAGTACAACAGACCTTTCATCCTCTCAAGAAGACAACACATTGTCAAAAAAGCGGCAGAAGTTGCATTGGGG..................................................................................................................................................................................................GCTCGACACCAAGGAGAGATGGGAAAGGAAATCCAATATGTAGAGATATCAGCATCTGAATATGGAATGCTTCTATCTTGCCCTTTTACTTATGAGGAGATACTAAGTCTCGGGCTCAGGCGTGTAGAGCAAACCAACCAATTACTGATAAATAACCCTTTTACTTGTAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0010E18-vqLN4/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E541124" ref_strand="+" ref_description="SGN-E541124 [TUS-61-M3](-)">
      <seq>gtcgggtctggagctgtttcaatggaagaggacgacgggaggagagaagctgcgatagcatcagtaccatctctacaacccaatttcaccaataaaaatggtgtcaacaatgctcaagtttccaaatttcaagagttgcatcgaagacgcttaaaaataaaagcaaaatctaaggtcaaggataaaacgaaaggaactgttgtctccactaaaaagtataatggtgaagatgtcaatgctaaatgcaaggcaatcatggatgaaaaatcaatagaaacagctaaagatgtgagaattactttgtcaataagcagtacaacagacctttcatcctctcaagaagacaacacattgtcaaaaaagcggcagaagttgcattgggggctcgacaccaaggagagatgggaaaggaaatccaatatgtagagatatcagcatctgaatatggaatgcttctatcttgcccttttacttatgaggagatactaagtctcgggctcaggcgtgtagagcaaaccaaccaattactgataaataacccttttactttaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0010E18-vqLN4/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02SLe0010E18.1" temp_strand="-" temp_description="C02SLe0010E18.1  AC215443.1 htgs_phase:3 submitted_to_sgn_as:C02SLe0010E18 sequenced_by:kribb upload_account_name:korea">
        <position start="94792" stop="91852"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="94492" g_stop="94361" g_length="132"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="132" r_length="132" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="94360" i_stop="92893" i_length="1468">
            <donor d_prob="0.993" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="92892" g_stop="92832" g_length="61"/>
          <reference_exon_boundary r_type="cDNA" r_start="133" r_stop="193" r_length="61" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="92831" i_stop="92707" i_length="125">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="92706" g_stop="92517" g_length="190"/>
          <reference_exon_boundary r_type="cDNA" r_start="194" r_stop="383" r_length="190" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="92516" i_stop="92323" i_length="194">
            <donor d_prob="0.952" d_score="1.00"/>
            <acceptor a_prob="0.989" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="92322" g_stop="92146" g_length="177"/>
          <reference_exon_boundary r_type="cDNA" r_start="384" r_stop="560" r_length="177" r_score="0.960"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLe0010E18.1" gen_strand="-" ref_id="SGN-E541124" ref_strand="+">
        <total_alignment_score>0.988</total_alignment_score>
        <cumulative_length_of_scored_exons>560</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0010E18.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E541124" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="94492" e_stop="94361"/>
          <exon e_start="92892" e_stop="92832"/>
          <exon e_start="92706" e_stop="92517"/>
          <exon e_start="92322" e_stop="92146"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTCGGGTCTGGAGCTGTTTCAATGGAAGAGGACGACGGGAGGAGAGAAGCTGCGATAGCATCAGTACCATCTCTACAACCCAATTTCACCAATAAAAATGGTGTCAACAATGCTCAAGTTTCCAAATTTCAAGTAATCTCTTTCTCGCCTTATTTCATACGTTTATAGAACCTAGTTTTCTTCTTGTTTTTCATTCATAAATAAAGGTAAACAAAATTTCTCTATCTAATGAAGTAGCAGTAATTATGATACTTTGAGTTTAGGAAATGGAATGAAATTCTCCGGAATAGAGCAAAATGATTATAGAGGATTTGTTATATGAGAGTTTTGGATCTCCCAGTTGTTGCACTAGTGACCTACATTCATAGAGCTATACTAAGATTTATCGCTGATAAAATTTATTGAGTCTTTGGAGATTTCTAGAGTCATCAATTCGAATAACAGTTAATAATTTTGTGAGAGTTTTAGTACTATTCTGGAATATCCTTCGTGAAGCCTAGCATCCGATCACCTCTATTATTACATATAACTCCCCTACATTACCTTGTACACCAGGGCTATCTATGGAAGAACAATCAATATTGAGATTGAGGCGTAGTTGATTGAATATGTCGAGGAAAACCAAGAATTGTAATTGGTAGTTTATCCAAGCTATATTAGAGGTTAAGGTGTGTGAGTTTTCGAGTGGAGTTGTAAAGCAATATACTTTGTGGTGCTTTTCAAGGATGTTTGGTTGGTTCTAACAAATAACCTTTGTGGTTGGGTGAATTGGTAATTTCTAACTAATATCATCGATTCATTGTAGGTTGATGTCTTCTGTCGTTGACATCAACCTACAATGAAAAAGCATAGCACACCACATACCATGTGACTTTCTAGCCTATGATTCAGCAAGCAACCCAAACTGTGGATCCTTACAAACCACATGTATATTCGAAAGGATGCTGAGCTATCAGTGTCATATGTTCCACATGTCCAATGTACACGTTTCCTAACAGTAATATCTAAAGCATGAGTTACAAGTTGGAAAACATTGAGTTGTTATTCCGAGAACACTAGAATTAATTGAAGGGCATCTGCCTCACGTAAGAAGTATTAGGTCCACCCGTGCACACTATTATTTACAAGCTTTATGTAACACGTCCAGTTAAGTATTTGCGAGCTTTTTCAGAATATGTAACTATGTAAAAACATGTCATGTTATTATGCTTAGAATGGTATGAGTAGCAGTTGGGCACTTTTACAGTTCTCAATCTTTATCCACGTATATGTTGATGTTTCAATCTGTGATCCCTTAAACATTTTCTAGAAGTCTTGGAGTAAAGGTTGCTTTAATTTTGGACTGTATAGTTGGATACATAGTTACGAGATGGTAAAATCGGTTTCAAAACTTAGAATACTGAGGTATAGGCTAGCAACAACATTGATTATATGTTAGACAAAGGAAATTCAAAACTTGCTTGCTGAGCTACGGGTTGGGGACTACATTTATTGAGTTTATGACATTCGGATATATAGATATGTGTGCTTAGTTGTTTTAGCTTTTTCTTCTTAGTTTGTCTGGATTGATTTTTCAATATCATGTTCTTTGGTTTGCCAGGAGTTGCATCGAAGACGCTTAAAAATAAAAGCAAAATCTAAGGTCAAGGATAAAACGAAAGGTATGTAGTTTGATTCTTCAGCACTCTGTTTACATTTTCAATGATTCTTTTCCTTTTTTGTATTGTTTACTTTTTCTATTGGAAGTGAATTTCTAGTTAACATTTTGATGAGGAGAGGTTTTCAGGAACTGTTGTCTCCACTAAAAAGTATAATGGTGAAGATGTCAATGCTAAATGCAAGGCAATCATGGATGAAAAATCAATAGAAACAGCTAAAGATGTGAGAATTACTTTGTCAATAAGCAGTACAACAGACCTTTCATCCTCTCAAGAAGACAACACATTGTCAAAAAAGCGGCAGAAGTTGCATTGGGGGTATGACCTTTCAAAATGTTGGCAATCATTATTTTTAGAAAAAACTATTAGATTGTGTCCCCCATCTAGAAAAAAAAGAGTAGGCTCAAGCACCTTTAGTGTTGTATTTGGTTGGTTATGTTTCTTTCTTTCTGATATTTTGATTTTGCATACCGTATGTTCTTATGAATCGTGCACTTCTCTACCTACTGTAGGCTCGACACCAAGGAGAGATGGGAAAGGAAATCCAATATGTAGAGATATCAGCATCTGAATATGGAATGCTTCTATCTTGCCCTTTTACTTATGAGGAGATACTAAGTCTCGGGCTCAGGCGTGTAGAGCAAACCAACCAATTACTGATAAATAACCCTTTTACTTGTAAATGTATT</genome_strand>
        <mrna_strand>GTCGGGTCTGGAGCTGTTTCAATGGAAGAGGACGACGGGAGGAGAGAAGCTGCGATAGCATCAGTACCATCTCTACAACCCAATTTCACCAATAAAAATGGTGTCAACAATGCTCAAGTTTCCAAATTTCAA............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAGTTGCATCGAAGACGCTTAAAAATAAAAGCAAAATCTAAGGTCAAGGATAAAACGAAAG.............................................................................................................................GAACTGTTGTCTCCACTAAAAAGTATAATGGTGAAGATGTCAATGCTAAATGCAAGGCAATCATGGATGAAAAATCAATAGAAACAGCTAAAGATGTGAGAATTACTTTGTCAATAAGCAGTACAACAGACCTTTCATCCTCTCAAGAAGACAACACATTGTCAAAAAAGCGGCAGAAGTTGCATTGGGG..................................................................................................................................................................................................GCTCGACACCAAGGAGAGATGGGAAAGGAAATCCAATATGTAGAGATATCAGCATCTGAATATGGAATGCTTCTATCTTGCCCTTTTACTTATGAGGAGATACTAAGTCTCGGGCTCAGGCGTGTAGAGCAAACCAACCAATTACTGATAAATAACCCTTTTACTTTAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0010E18-vqLN4/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E707103" ref_strand="+" ref_description="SGN-E707103 [FA32AC09]">
      <seq>ctttgttttcctctctatcttcactccatagttcctccttttccggcggaccatcgccgccggagtctggtaaaaattcgacccgagacggacatatttctcttttacctagtataccgtcggagatggaggattacttgaagctattcgtggaggagacatcgttttacaaccgtctggttttgggtacattcttgccggaatcatggtggggaccacttcctcatatgcttcaaggatggctccgtaactacattggcggtgttttactttacttcatctccggtttcctctggtgcttctatatttatcacttgaaacgcaatgtctatattcccaaagatgccataccatcaaagcaagcaatgctgttgcaaatatcagttgctatgaaagctatgccgtggtactgtgcccttccatcactttctgagtacatgattgaaaacggatggaccaaatgttttgcgagaataagtgatgttggatggcctacctacatcatcaatgcggctatttatcttgtaatagtggagtttggaatctactggatgcacaagttattgcatgacataaaacctctgtataaatatctgcatgctacacatcatatttacaacaagcaaaacacactttccccatttgctggattggcattccacccattggatggaatactgcaggcagtgccacacgttgtagctcttttcttggtgccaatgcatttcactacacacatagtgctcatattcgtggaagccttatggacggctaatattcatgactgcatacatggtaaggtgtggcctgtaatgggtgccggttatcataccattcacccatacacataccgccataattatggtcattacacaatatggatggactggatgtttggaactc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0010E18-vqLN4/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02SLe0010E18.1" temp_strand="+" temp_description="C02SLe0010E18.1  AC215443.1 htgs_phase:3 submitted_to_sgn_as:C02SLe0010E18 sequenced_by:kribb upload_account_name:korea">
        <position start="96751" stop="99546"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="97051" g_stop="97391" g_length="341"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="342" r_length="342" r_score="0.988"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="97392" i_stop="97977" i_length="586">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.776" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="97978" g_stop="98283" g_length="306"/>
          <reference_exon_boundary r_type="cDNA" r_start="343" r_stop="648" r_length="306" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="98284" i_stop="98991" i_length="708">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="98992" g_stop="99246" g_length="255"/>
          <reference_exon_boundary r_type="cDNA" r_start="649" r_stop="903" r_length="255" r_score="0.988"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLe0010E18.1" gen_strand="+" ref_id="SGN-E707103" ref_strand="+">
        <total_alignment_score>0.992</total_alignment_score>
        <cumulative_length_of_scored_exons>902</cumulative_length_of_scored_exons>
        <coverage percentage="0.999" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0010E18.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E707103" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="97051" e_stop="97391"/>
          <exon e_start="97978" e_stop="98283"/>
          <exon e_start="98992" e_stop="99246"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTTTGTTTTCCTCTCTATCTTCACTCCATAGTTCCTCCTTTTCCGGCGGACCATCGCCGCCGGAGTCTGGTAAAACC-CGACCCGAGACGGACATATTTCTCTTTTACCTAGTATACCGTCGGAGATGGAGGATTACTTGAAGCTATTCGTGGAGGAGACATCGTTTTACAACCGTCTGGTTTTGGGTACATTCTTGCCGGAATCATGGTGGGGACCACTTCCTCATATGCTTCAAGGATGGCTCCGTAACTACATTGGCGGTGTTTTACTTTACTTCATCTCCGGTTTCCTCTGGTGCTTCTATATTTATCACTTGAAACGCAATGTCTATATTCCCAAAGGTATTGATTTCTTTTTTCCCTTTTTCTCCCGTGAAAGTTTTTTTATTTATTTATTTTTTGTGTATAGATGATTTCTTTGCATTATTGGAAATTTTCAAGTTAATGAATTACGTTGACTGTTTTAGTAACGCTTGTGAAGGTTGGATTCTGAATATTCACTCTTTTGATTTGAATATTTTGGCATTTTTTGGGTGCTACTGTATTTGAAGTAGGTAAAGAGTAAGAAGCATATTCCCATTTTATAGTGTATTGATATGTAGAGCAATTACTGTGGATCTGAAACTATCATGTATCAGTAACTCTGACTAGAAAATACGAGAAGAAATCACCTAGTGTTTTGTCTCTGTTGGTATTTGAACCTGAGACGTTATTCTTACTCAACCCACCTGATTGACAGTAGGCCACCTCCTTGTGTATATTTGTGGTCCCGTTAGTTCAAACTAGGGATGTCAATACCTCAGATGAATTTAACAATTCTAGGTTTTTACGATTCGATAAAGATAAAGAGTAATTAATGTTTTGTATTTTCTCCCGTTTGGTTAAAAAGAGGAAATTATATATGGGCTGATGAACAGTTTGATTGCAGATGCCATACCATCAAAGCAAGCAATGCTGTTGCAAATATCAGTTGCTATGAAAGCTATGCCGTGGTACTGTGCCCTTCCATCACTTTCTGAGTACATGATTGAAAACGGATGGACCAAATGTTTTGCGAGAATAAGTGATGTTGGATGGCCTACCTACATCATCAATGCGGCTATTTATCTTGTAATAGTGGAGTTTGGAATCTACTGGATGCACAAGTTATTGCATGACATAAAACCTCTGTATAAATATCTGCATGCTACACATCATATTTACAACAAGCAAAACACACTTTCCCCATTTGCTGGTAAGCTCTTAAGTCTACTCATACCATATTGGTGCTTATTTCTGAAAACAACTTCTAGCTCGTGGAGCCATTAGGTGTCTCTGTGATACTTTATTGATAGTTTGTTGAATTAGTGAGCGTCTTAGTTGCGCGGATTCTTCACTTTTGATTCTCGGATTCTTCAAAAATACACTACTTTTGGCTAATCCGACACGCAACCCCTTGACATTTTTGAAGAGTCCGAGCAACATAAGTGAGTGTTTCCTTTGTGATGACTAAAAACGTTGAAAAGCTAGTCACGAGGACATTAAATTAATATGTGTATTTTAACATTCATGTCTTCAGTCGGTGCATCATTTCGTTTCGTGGTCAGGAGAGTCGAGTGTTGACTTAGGTATTTGGTTAGACTAGGGAATAACTGAACACATTGGAATTTCGTCTCTTGCCTTTTAATTGTTTCTGTGTGCCAAAATCCAGTTTAGTTGAAAAGAGTGGAGTAGCGTTTGATAACCGTTTTGTTGTTATTTTCTCCTTTCCTTTTGTTGGAAACTAGAACTTGTTACAGGATTGAGGAAAGAAAAATATTAAGCAGTTAATTTTATGGTTAGTTGTGTGTTGTAATTTCTGATGCTCTATCGAAGCTAATTTGACCTCTTGAGAGTCATGGCTTCTTTTATGTTTTATCTGGTACATTTTCAAGCTAATTGCTAAACATGTTCTGTTATTCAGGATTGGCATTCCACCCATTGGATGGAATACTGCAGGCAGTGCCACACGTTGTAGCTCTTTTCTTGGTGCCAATGCATTTCACTACACACATAGTGCTCATATTCGTGGAAGCCTTATGGACGGCTAATATTCATGACTGCATACATGGTAAGGTGTGGCCTGTAATGGGTGCCGGTTATCATACCATTCA-CCATACAACATACCGCCATAATTATGGTCATTACACAATATGGATGGACTGGATGTTTGGAACTC</genome_strand>
        <mrna_strand>CTTTGTTTTCCTCTCTATCTTCACTCCATAGTTCCTCCTTTTCCGGCGGACCATCGCCGCCGGAGTCTGGTAAAAATTCGACCCGAGACGGACATATTTCTCTTTTACCTAGTATACCGTCGGAGATGGAGGATTACTTGAAGCTATTCGTGGAGGAGACATCGTTTTACAACCGTCTGGTTTTGGGTACATTCTTGCCGGAATCATGGTGGGGACCACTTCCTCATATGCTTCAAGGATGGCTCCGTAACTACATTGGCGGTGTTTTACTTTACTTCATCTCCGGTTTCCTCTGGTGCTTCTATATTTATCACTTGAAACGCAATGTCTATATTCCCAAAG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATGCCATACCATCAAAGCAAGCAATGCTGTTGCAAATATCAGTTGCTATGAAAGCTATGCCGTGGTACTGTGCCCTTCCATCACTTTCTGAGTACATGATTGAAAACGGATGGACCAAATGTTTTGCGAGAATAAGTGATGTTGGATGGCCTACCTACATCATCAATGCGGCTATTTATCTTGTAATAGTGGAGTTTGGAATCTACTGGATGCACAAGTTATTGCATGACATAAAACCTCTGTATAAATATCTGCATGCTACACATCATATTTACAACAAGCAAAACACACTTTCCCCATTTGCTG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATTGGCATTCCACCCATTGGATGGAATACTGCAGGCAGTGCCACACGTTGTAGCTCTTTTCTTGGTGCCAATGCATTTCACTACACACATAGTGCTCATATTCGTGGAAGCCTTATGGACGGCTAATATTCATGACTGCATACATGGTAAGGTGTGGCCTGTAATGGGTGCCGGTTATCATACCATTCACCCATAC-ACATACCGCCATAATTATGGTCATTACACAATATGGATGGACTGGATGTTTGGAACTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0010E18-vqLN4/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E309459" ref_strand="+" ref_description="SGN-E309459 [cTOA-2-A22]">
      <seq>tttgtaaacttctctatcttcactccatagttcctccttttccggcggaccatcgccgccggagtctggtaaaacccgacccgagacggacatatttctcttttacctagtataccgtcggagatggaggattacttgaagctattcgtggaggagacatcgttttacaaccgtctggttttgggtacattcttgccggaatcatggtggggaccacttcctcatatgcttcaaggatggctccgtaactacattggcggagttttactatacttcatctgcggtttcctctggtgcttctatatttatcacttgaaacgcaatgtctatattcccaaagatgccataccatcaaagcaagcaatgctgctgcaaatatcaggtgctatgaaagctatgccgcggtactgtgcccttccatcactttctgagtacatgattgaaaacggatggaccaaatgttttgcgagaataagtgatg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0010E18-vqLN4/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02SLe0010E18.1" temp_strand="+" temp_description="C02SLe0010E18.1  AC215443.1 htgs_phase:3 submitted_to_sgn_as:C02SLe0010E18 sequenced_by:kribb upload_account_name:korea">
        <position start="96760" stop="98418"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="97052" g_stop="97391" g_length="340"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="340" r_length="340" r_score="0.979"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="97392" i_stop="97977" i_length="586">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.776" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="97978" g_stop="98118" g_length="141"/>
          <reference_exon_boundary r_type="cDNA" r_start="341" r_stop="481" r_length="141" r_score="0.979"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLe0010E18.1" gen_strand="+" ref_id="SGN-E309459" ref_strand="+">
        <total_alignment_score>0.979</total_alignment_score>
        <cumulative_length_of_scored_exons>481</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0010E18.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E309459" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="97052" e_stop="97391"/>
          <exon e_start="97978" e_stop="98118"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTGTTTTCCTCTCTATCTTCACTCCATAGTTCCTCCTTTTCCGGCGGACCATCGCCGCCGGAGTCTGGTAAAACCCGACCCGAGACGGACATATTTCTCTTTTACCTAGTATACCGTCGGAGATGGAGGATTACTTGAAGCTATTCGTGGAGGAGACATCGTTTTACAACCGTCTGGTTTTGGGTACATTCTTGCCGGAATCATGGTGGGGACCACTTCCTCATATGCTTCAAGGATGGCTCCGTAACTACATTGGCGGTGTTTTACTTTACTTCATCTCCGGTTTCCTCTGGTGCTTCTATATTTATCACTTGAAACGCAATGTCTATATTCCCAAAGGTATTGATTTCTTTTTTCCCTTTTTCTCCCGTGAAAGTTTTTTTATTTATTTATTTTTTGTGTATAGATGATTTCTTTGCATTATTGGAAATTTTCAAGTTAATGAATTACGTTGACTGTTTTAGTAACGCTTGTGAAGGTTGGATTCTGAATATTCACTCTTTTGATTTGAATATTTTGGCATTTTTTGGGTGCTACTGTATTTGAAGTAGGTAAAGAGTAAGAAGCATATTCCCATTTTATAGTGTATTGATATGTAGAGCAATTACTGTGGATCTGAAACTATCATGTATCAGTAACTCTGACTAGAAAATACGAGAAGAAATCACCTAGTGTTTTGTCTCTGTTGGTATTTGAACCTGAGACGTTATTCTTACTCAACCCACCTGATTGACAGTAGGCCACCTCCTTGTGTATATTTGTGGTCCCGTTAGTTCAAACTAGGGATGTCAATACCTCAGATGAATTTAACAATTCTAGGTTTTTACGATTCGATAAAGATAAAGAGTAATTAATGTTTTGTATTTTCTCCCGTTTGGTTAAAAAGAGGAAATTATATATGGGCTGATGAACAGTTTGATTGCAGATGCCATACCATCAAAGCAAGCAATGCTGTTGCAAATATCAGTTGCTATGAAAGCTATGCCGTGGTACTGTGCCCTTCCATCACTTTCTGAGTACATGATTGAAAACGGATGGACCAAATGTTTTGCGAGAATAAGTGATG</genome_strand>
        <mrna_strand>TTTGTAAACTTCTCTATCTTCACTCCATAGTTCCTCCTTTTCCGGCGGACCATCGCCGCCGGAGTCTGGTAAAACCCGACCCGAGACGGACATATTTCTCTTTTACCTAGTATACCGTCGGAGATGGAGGATTACTTGAAGCTATTCGTGGAGGAGACATCGTTTTACAACCGTCTGGTTTTGGGTACATTCTTGCCGGAATCATGGTGGGGACCACTTCCTCATATGCTTCAAGGATGGCTCCGTAACTACATTGGCGGAGTTTTACTATACTTCATCTGCGGTTTCCTCTGGTGCTTCTATATTTATCACTTGAAACGCAATGTCTATATTCCCAAAG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATGCCATACCATCAAAGCAAGCAATGCTGCTGCAAATATCAGGTGCTATGAAAGCTATGCCGCGGTACTGTGCCCTTCCATCACTTTCTGAGTACATGATTGAAAACGGATGGACCAAATGTTTTGCGAGAATAAGTGATG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0010E18-vqLN4/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E319563" ref_strand="+" ref_description="SGN-E319563 [cTOB-15-P13]">
      <seq>ttgttttcctctctatcttcactccatagttcctccttttccggcggaccatcgccgccggagtctggtaaaacccgacccgagacggacatatttctctttgacctagtataccgaccgagatggaggattacttgaagctattcgtggaggagacatcgttttacaaccgtctggttttgggtacattctatgccggaatcatggtggggaccacttcctcatatgcttcaaggatggctccgtaactacattggcggtgttacactttacttcatctccggctacctctggtgcttctatatacatcacttgaaacgcaatgtctatattctcaaagatgccataccatcgaagcaagcaatgctgttgcaaatatcagttgctatgaaagctatgccgcggtactgtgccctttcatcactttctgagtacatgattgaaaacggatggaccaaatgttttgcgagaataagagatggtggatggcctacctacatcatcaatgcggctatatatcttgtaatagtggagtgtggaatctactggatgcacaagttattgcctgacataaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0010E18-vqLN4/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02SLe0010E18.1" temp_strand="+" temp_description="C02SLe0010E18.1  AC215443.1 htgs_phase:3 submitted_to_sgn_as:C02SLe0010E18 sequenced_by:kribb upload_account_name:korea">
        <position start="96753" stop="98512"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="97053" g_stop="97391" g_length="339"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="340" r_length="340" r_score="0.965"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="97392" i_stop="97977" i_length="586">
            <donor d_prob="0.999" d_score="0.94"/>
            <acceptor a_prob="0.776" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="97978" g_stop="98212" g_length="235"/>
          <reference_exon_boundary r_type="cDNA" r_start="341" r_stop="575" r_length="235" r_score="0.966"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLe0010E18.1" gen_strand="+" ref_id="SGN-E319563" ref_strand="+">
        <total_alignment_score>0.965</total_alignment_score>
        <cumulative_length_of_scored_exons>574</cumulative_length_of_scored_exons>
        <coverage percentage="0.998" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0010E18.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E319563" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="97053" e_stop="97391"/>
          <exon e_start="97978" e_stop="98212"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTGTTTTCCTCTCTATCTTCACTCCATAGTTCCTCCTTTTCCGGCGGACCATCGCCGCCGGAGTCTGGTAAAACCCGACCCGAGACGGACATATTTCTCTTTTACCTAGTATACCGTCGGAGATGGAGGATTACTTGAAGCTATTCGTGGAGGAGACATCGTTTTACAACCGTCTGGTTTTGGGTACATTCT-TGCCGGAATCATGGTGGGGACCACTTCCTCATATGCTTCAAGGATGGCTCCGTAACTACATTGGCGGTGTTTTACTTTACTTCATCTCCGGTTTCCTCTGGTGCTTCTATATTTATCACTTGAAACGCAATGTCTATATTCCCAAAGGTATTGATTTCTTTTTTCCCTTTTTCTCCCGTGAAAGTTTTTTTATTTATTTATTTTTTGTGTATAGATGATTTCTTTGCATTATTGGAAATTTTCAAGTTAATGAATTACGTTGACTGTTTTAGTAACGCTTGTGAAGGTTGGATTCTGAATATTCACTCTTTTGATTTGAATATTTTGGCATTTTTTGGGTGCTACTGTATTTGAAGTAGGTAAAGAGTAAGAAGCATATTCCCATTTTATAGTGTATTGATATGTAGAGCAATTACTGTGGATCTGAAACTATCATGTATCAGTAACTCTGACTAGAAAATACGAGAAGAAATCACCTAGTGTTTTGTCTCTGTTGGTATTTGAACCTGAGACGTTATTCTTACTCAACCCACCTGATTGACAGTAGGCCACCTCCTTGTGTATATTTGTGGTCCCGTTAGTTCAAACTAGGGATGTCAATACCTCAGATGAATTTAACAATTCTAGGTTTTTACGATTCGATAAAGATAAAGAGTAATTAATGTTTTGTATTTTCTCCCGTTTGGTTAAAAAGAGGAAATTATATATGGGCTGATGAACAGTTTGATTGCAGATGCCATACCATCAAAGCAAGCAATGCTGTTGCAAATATCAGTTGCTATGAAAGCTATGCCGTGGTACTGTGCCCTTCCATCACTTTCTGAGTACATGATTGAAAACGGATGGACCAAATGTTTTGCGAGAATAAGTGATGTTGGATGGCCTACCTACATCATCAATGCGGCTATTTATCTTGTAATAGTGGAGTTTGGAATCTACTGGATGCACAAGTTATTGCATGACATAAA</genome_strand>
        <mrna_strand>TTGTTTTCCTCTCTATCTTCACTCCATAGTTCCTCCTTTTCCGGCGGACCATCGCCGCCGGAGTCTGGTAAAACCCGACCCGAGACGGACATATTTCTCTTTGACCTAGTATACCGACCGAGATGGAGGATTACTTGAAGCTATTCGTGGAGGAGACATCGTTTTACAACCGTCTGGTTTTGGGTACATTCTATGCCGGAATCATGGTGGGGACCACTTCCTCATATGCTTCAAGGATGGCTCCGTAACTACATTGGCGGTGTTACACTTTACTTCATCTCCGGCTACCTCTGGTGCTTCTATATACATCACTTGAAACGCAATGTCTATATTCTCAAAG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATGCCATACCATCGAAGCAAGCAATGCTGTTGCAAATATCAGTTGCTATGAAAGCTATGCCGCGGTACTGTGCCCTTTCATCACTTTCTGAGTACATGATTGAAAACGGATGGACCAAATGTTTTGCGAGAATAAGAGATGGTGGATGGCCTACCTACATCATCAATGCGGCTATATATCTTGTAATAGTGGAGTGTGGAATCTACTGGATGCACAAGTTATTGCCTGACATAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0010E18-vqLN4/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E707705" ref_strand="+" ref_description="SGN-E707705 [FA33DA07]">
      <seq>ccctttatcttcactccatagttcctccttttccggcggaccatcgccgccggagtctggtaaaaattcgacccgagacggacatatttctcttttacctagtataccgtcggagatggaggattacttgaagctattcgtggaggagacatcgttttacaaccgtctggttttgggtacattcttgccggaatcatggtggggaccacttcctcatatgcttcaaggatggctccgtaactacattggcggtgttttactttacttcatctccggtttcctctggtgcttctatatttatcacttgaaacgcaatgtctatattcccaaagatgccataccatcaaagcaagcaatgctgttgcaaatatcagttgctatgaaagctatgccgtggtactgtgcccttccatcactttctgagtacatgattgaaaacggatggaccaaatgttttgcgagaataagtgatgttggatggcctacctacatcatcaatgcggctatttatcttgtaatagtggagtttggaatctactggatgcacaagttattgcatgacataaaacctctgtataaatatctgcatgctacacatcatatttacaacaagcaaaacacactttccccatttgctggattggcattccacccattggatggaatactgcaggcagtgccacacgttgtagctcttttcttggtgccaatgcatttcactacacacatagtgctcatattcgtggaagccttatggacggctaatattcatgactgcatacatggtaaggtgtggcctgtaatgggtgccggttatcataccattcaccatacaacataccgccataattatggtcattacacaatatggatggactggatgttt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0010E18-vqLN4/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02SLe0010E18.1" temp_strand="+" temp_description="C02SLe0010E18.1  AC215443.1 htgs_phase:3 submitted_to_sgn_as:C02SLe0010E18 sequenced_by:kribb upload_account_name:korea">
        <position start="96761" stop="99539"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="97061" g_stop="97391" g_length="331"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="332" r_length="332" r_score="0.982"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="97392" i_stop="97977" i_length="586">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.776" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="97978" g_stop="98283" g_length="306"/>
          <reference_exon_boundary r_type="cDNA" r_start="333" r_stop="638" r_length="306" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="98284" i_stop="98991" i_length="708">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="98992" g_stop="99239" g_length="248"/>
          <reference_exon_boundary r_type="cDNA" r_start="639" r_stop="886" r_length="248" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLe0010E18.1" gen_strand="+" ref_id="SGN-E707705" ref_strand="+">
        <total_alignment_score>0.993</total_alignment_score>
        <cumulative_length_of_scored_exons>885</cumulative_length_of_scored_exons>
        <coverage percentage="0.999" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0010E18.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E707705" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="97061" e_stop="97391"/>
          <exon e_start="97978" e_stop="98283"/>
          <exon e_start="98992" e_stop="99239"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTCTCTATCTTCACTCCATAGTTCCTCCTTTTCCGGCGGACCATCGCCGCCGGAGTCTGGT-AAAACCCGACCCGAGACGGACATATTTCTCTTTTACCTAGTATACCGTCGGAGATGGAGGATTACTTGAAGCTATTCGTGGAGGAGACATCGTTTTACAACCGTCTGGTTTTGGGTACATTCTTGCCGGAATCATGGTGGGGACCACTTCCTCATATGCTTCAAGGATGGCTCCGTAACTACATTGGCGGTGTTTTACTTTACTTCATCTCCGGTTTCCTCTGGTGCTTCTATATTTATCACTTGAAACGCAATGTCTATATTCCCAAAGGTATTGATTTCTTTTTTCCCTTTTTCTCCCGTGAAAGTTTTTTTATTTATTTATTTTTTGTGTATAGATGATTTCTTTGCATTATTGGAAATTTTCAAGTTAATGAATTACGTTGACTGTTTTAGTAACGCTTGTGAAGGTTGGATTCTGAATATTCACTCTTTTGATTTGAATATTTTGGCATTTTTTGGGTGCTACTGTATTTGAAGTAGGTAAAGAGTAAGAAGCATATTCCCATTTTATAGTGTATTGATATGTAGAGCAATTACTGTGGATCTGAAACTATCATGTATCAGTAACTCTGACTAGAAAATACGAGAAGAAATCACCTAGTGTTTTGTCTCTGTTGGTATTTGAACCTGAGACGTTATTCTTACTCAACCCACCTGATTGACAGTAGGCCACCTCCTTGTGTATATTTGTGGTCCCGTTAGTTCAAACTAGGGATGTCAATACCTCAGATGAATTTAACAATTCTAGGTTTTTACGATTCGATAAAGATAAAGAGTAATTAATGTTTTGTATTTTCTCCCGTTTGGTTAAAAAGAGGAAATTATATATGGGCTGATGAACAGTTTGATTGCAGATGCCATACCATCAAAGCAAGCAATGCTGTTGCAAATATCAGTTGCTATGAAAGCTATGCCGTGGTACTGTGCCCTTCCATCACTTTCTGAGTACATGATTGAAAACGGATGGACCAAATGTTTTGCGAGAATAAGTGATGTTGGATGGCCTACCTACATCATCAATGCGGCTATTTATCTTGTAATAGTGGAGTTTGGAATCTACTGGATGCACAAGTTATTGCATGACATAAAACCTCTGTATAAATATCTGCATGCTACACATCATATTTACAACAAGCAAAACACACTTTCCCCATTTGCTGGTAAGCTCTTAAGTCTACTCATACCATATTGGTGCTTATTTCTGAAAACAACTTCTAGCTCGTGGAGCCATTAGGTGTCTCTGTGATACTTTATTGATAGTTTGTTGAATTAGTGAGCGTCTTAGTTGCGCGGATTCTTCACTTTTGATTCTCGGATTCTTCAAAAATACACTACTTTTGGCTAATCCGACACGCAACCCCTTGACATTTTTGAAGAGTCCGAGCAACATAAGTGAGTGTTTCCTTTGTGATGACTAAAAACGTTGAAAAGCTAGTCACGAGGACATTAAATTAATATGTGTATTTTAACATTCATGTCTTCAGTCGGTGCATCATTTCGTTTCGTGGTCAGGAGAGTCGAGTGTTGACTTAGGTATTTGGTTAGACTAGGGAATAACTGAACACATTGGAATTTCGTCTCTTGCCTTTTAATTGTTTCTGTGTGCCAAAATCCAGTTTAGTTGAAAAGAGTGGAGTAGCGTTTGATAACCGTTTTGTTGTTATTTTCTCCTTTCCTTTTGTTGGAAACTAGAACTTGTTACAGGATTGAGGAAAGAAAAATATTAAGCAGTTAATTTTATGGTTAGTTGTGTGTTGTAATTTCTGATGCTCTATCGAAGCTAATTTGACCTCTTGAGAGTCATGGCTTCTTTTATGTTTTATCTGGTACATTTTCAAGCTAATTGCTAAACATGTTCTGTTATTCAGGATTGGCATTCCACCCATTGGATGGAATACTGCAGGCAGTGCCACACGTTGTAGCTCTTTTCTTGGTGCCAATGCATTTCACTACACACATAGTGCTCATATTCGTGGAAGCCTTATGGACGGCTAATATTCATGACTGCATACATGGTAAGGTGTGGCCTGTAATGGGTGCCGGTTATCATACCATTCACCATACAACATACCGCCATAATTATGGTCATTACACAATATGGATGGACTGGATGTTT</genome_strand>
        <mrna_strand>CCCTTTATCTTCACTCCATAGTTCCTCCTTTTCCGGCGGACCATCGCCGCCGGAGTCTGGTAAAAATTCGACCCGAGACGGACATATTTCTCTTTTACCTAGTATACCGTCGGAGATGGAGGATTACTTGAAGCTATTCGTGGAGGAGACATCGTTTTACAACCGTCTGGTTTTGGGTACATTCTTGCCGGAATCATGGTGGGGACCACTTCCTCATATGCTTCAAGGATGGCTCCGTAACTACATTGGCGGTGTTTTACTTTACTTCATCTCCGGTTTCCTCTGGTGCTTCTATATTTATCACTTGAAACGCAATGTCTATATTCCCAAAG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATGCCATACCATCAAAGCAAGCAATGCTGTTGCAAATATCAGTTGCTATGAAAGCTATGCCGTGGTACTGTGCCCTTCCATCACTTTCTGAGTACATGATTGAAAACGGATGGACCAAATGTTTTGCGAGAATAAGTGATGTTGGATGGCCTACCTACATCATCAATGCGGCTATTTATCTTGTAATAGTGGAGTTTGGAATCTACTGGATGCACAAGTTATTGCATGACATAAAACCTCTGTATAAATATCTGCATGCTACACATCATATTTACAACAAGCAAAACACACTTTCCCCATTTGCTG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATTGGCATTCCACCCATTGGATGGAATACTGCAGGCAGTGCCACACGTTGTAGCTCTTTTCTTGGTGCCAATGCATTTCACTACACACATAGTGCTCATATTCGTGGAAGCCTTATGGACGGCTAATATTCATGACTGCATACATGGTAAGGTGTGGCCTGTAATGGGTGCCGGTTATCATACCATTCACCATACAACATACCGCCATAATTATGGTCATTACACAATATGGATGGACTGGATGTTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0010E18-vqLN4/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E326045" ref_strand="+" ref_description="SGN-E326045 [cTOC-16-E13]">
      <seq>cggaccatcgccgccggagtctggtaaaacccgacccgagacggacatatttctcttttacctagtataccgtcggagatggaggattacttgaagctattcgtggaggagacatcgttttacaaccgtctggttttgggtacattcttgccggaatcatggtggggaccacttcctcatatgcttcaaggatggctccgtaactacattggcggtgttttactttacttcatctccggtttcctctggtgcttctatatttatcacttgaaacgcaatgtctatattcccaaagatgccataccatcaaagcaagcaatgctgttgcaaatatcagttgctatgaaagctatgccgtggtactgtgcccttccatcactttctgagtacatgattgaaaacggatggaccaaatgttttgcgagaataagtgatgttggatggcctacctacatcatcaatgcggctatttatcttgtaatagtggagtttggaatctactggatgcacaagttattgcatgacataaaacctctgtataaatatctgcatgctacacatcatatttacaacaagcaaaacacactttccccatttgctggattggcattccacccattggatggaatactgcaggcagtgccacacgttgtagctcttttcttggtgcaatgcatttcactacacacatagtgctcatattcgtggaagccttatggacggctaatattcatgactgcatac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0010E18-vqLN4/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02SLe0010E18.1" temp_strand="+" temp_description="C02SLe0010E18.1  AC215443.1 htgs_phase:3 submitted_to_sgn_as:C02SLe0010E18 sequenced_by:kribb upload_account_name:korea">
        <position start="96797" stop="99435"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="97097" g_stop="97391" g_length="295"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="295" r_length="295" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="97392" i_stop="97977" i_length="586">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.776" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="97978" g_stop="98283" g_length="306"/>
          <reference_exon_boundary r_type="cDNA" r_start="296" r_stop="601" r_length="306" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="98284" i_stop="98991" i_length="708">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="98992" g_stop="99135" g_length="144"/>
          <reference_exon_boundary r_type="cDNA" r_start="602" r_stop="744" r_length="143" r_score="0.993"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLe0010E18.1" gen_strand="+" ref_id="SGN-E326045" ref_strand="+">
        <total_alignment_score>0.999</total_alignment_score>
        <cumulative_length_of_scored_exons>745</cumulative_length_of_scored_exons>
        <coverage percentage="1.001" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0010E18.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E326045" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="97097" e_stop="97391"/>
          <exon e_start="97978" e_stop="98283"/>
          <exon e_start="98992" e_stop="99135"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CGGACCATCGCCGCCGGAGTCTGGTAAAACCCGACCCGAGACGGACATATTTCTCTTTTACCTAGTATACCGTCGGAGATGGAGGATTACTTGAAGCTATTCGTGGAGGAGACATCGTTTTACAACCGTCTGGTTTTGGGTACATTCTTGCCGGAATCATGGTGGGGACCACTTCCTCATATGCTTCAAGGATGGCTCCGTAACTACATTGGCGGTGTTTTACTTTACTTCATCTCCGGTTTCCTCTGGTGCTTCTATATTTATCACTTGAAACGCAATGTCTATATTCCCAAAGGTATTGATTTCTTTTTTCCCTTTTTCTCCCGTGAAAGTTTTTTTATTTATTTATTTTTTGTGTATAGATGATTTCTTTGCATTATTGGAAATTTTCAAGTTAATGAATTACGTTGACTGTTTTAGTAACGCTTGTGAAGGTTGGATTCTGAATATTCACTCTTTTGATTTGAATATTTTGGCATTTTTTGGGTGCTACTGTATTTGAAGTAGGTAAAGAGTAAGAAGCATATTCCCATTTTATAGTGTATTGATATGTAGAGCAATTACTGTGGATCTGAAACTATCATGTATCAGTAACTCTGACTAGAAAATACGAGAAGAAATCACCTAGTGTTTTGTCTCTGTTGGTATTTGAACCTGAGACGTTATTCTTACTCAACCCACCTGATTGACAGTAGGCCACCTCCTTGTGTATATTTGTGGTCCCGTTAGTTCAAACTAGGGATGTCAATACCTCAGATGAATTTAACAATTCTAGGTTTTTACGATTCGATAAAGATAAAGAGTAATTAATGTTTTGTATTTTCTCCCGTTTGGTTAAAAAGAGGAAATTATATATGGGCTGATGAACAGTTTGATTGCAGATGCCATACCATCAAAGCAAGCAATGCTGTTGCAAATATCAGTTGCTATGAAAGCTATGCCGTGGTACTGTGCCCTTCCATCACTTTCTGAGTACATGATTGAAAACGGATGGACCAAATGTTTTGCGAGAATAAGTGATGTTGGATGGCCTACCTACATCATCAATGCGGCTATTTATCTTGTAATAGTGGAGTTTGGAATCTACTGGATGCACAAGTTATTGCATGACATAAAACCTCTGTATAAATATCTGCATGCTACACATCATATTTACAACAAGCAAAACACACTTTCCCCATTTGCTGGTAAGCTCTTAAGTCTACTCATACCATATTGGTGCTTATTTCTGAAAACAACTTCTAGCTCGTGGAGCCATTAGGTGTCTCTGTGATACTTTATTGATAGTTTGTTGAATTAGTGAGCGTCTTAGTTGCGCGGATTCTTCACTTTTGATTCTCGGATTCTTCAAAAATACACTACTTTTGGCTAATCCGACACGCAACCCCTTGACATTTTTGAAGAGTCCGAGCAACATAAGTGAGTGTTTCCTTTGTGATGACTAAAAACGTTGAAAAGCTAGTCACGAGGACATTAAATTAATATGTGTATTTTAACATTCATGTCTTCAGTCGGTGCATCATTTCGTTTCGTGGTCAGGAGAGTCGAGTGTTGACTTAGGTATTTGGTTAGACTAGGGAATAACTGAACACATTGGAATTTCGTCTCTTGCCTTTTAATTGTTTCTGTGTGCCAAAATCCAGTTTAGTTGAAAAGAGTGGAGTAGCGTTTGATAACCGTTTTGTTGTTATTTTCTCCTTTCCTTTTGTTGGAAACTAGAACTTGTTACAGGATTGAGGAAAGAAAAATATTAAGCAGTTAATTTTATGGTTAGTTGTGTGTTGTAATTTCTGATGCTCTATCGAAGCTAATTTGACCTCTTGAGAGTCATGGCTTCTTTTATGTTTTATCTGGTACATTTTCAAGCTAATTGCTAAACATGTTCTGTTATTCAGGATTGGCATTCCACCCATTGGATGGAATACTGCAGGCAGTGCCACACGTTGTAGCTCTTTTCTTGGTGCCAATGCATTTCACTACACACATAGTGCTCATATTCGTGGAAGCCTTATGGACGGCTAATATTCATGACTGCATAC</genome_strand>
        <mrna_strand>CGGACCATCGCCGCCGGAGTCTGGTAAAACCCGACCCGAGACGGACATATTTCTCTTTTACCTAGTATACCGTCGGAGATGGAGGATTACTTGAAGCTATTCGTGGAGGAGACATCGTTTTACAACCGTCTGGTTTTGGGTACATTCTTGCCGGAATCATGGTGGGGACCACTTCCTCATATGCTTCAAGGATGGCTCCGTAACTACATTGGCGGTGTTTTACTTTACTTCATCTCCGGTTTCCTCTGGTGCTTCTATATTTATCACTTGAAACGCAATGTCTATATTCCCAAAG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATGCCATACCATCAAAGCAAGCAATGCTGTTGCAAATATCAGTTGCTATGAAAGCTATGCCGTGGTACTGTGCCCTTCCATCACTTTCTGAGTACATGATTGAAAACGGATGGACCAAATGTTTTGCGAGAATAAGTGATGTTGGATGGCCTACCTACATCATCAATGCGGCTATTTATCTTGTAATAGTGGAGTTTGGAATCTACTGGATGCACAAGTTATTGCATGACATAAAACCTCTGTATAAATATCTGCATGCTACACATCATATTTACAACAAGCAAAACACACTTTCCCCATTTGCTG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATTGGCATTCCACCCATTGGATGGAATACTGCAGGCAGTGCCACACGTTGTAGCTCTTTTCTTGGTG-CAATGCATTTCACTACACACATAGTGCTCATATTCGTGGAAGCCTTATGGACGGCTAATATTCATGACTGCATAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0010E18-vqLN4/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E310397" ref_strand="+" ref_description="SGN-E310397 [cTOA-10-I22]">
      <seq>cgccggagtctggtttaacccgacccgagacggacatatttctcttttacctagtataccgccggagatggaggattacttgaagctattcgtggaggagacatcgttttacaaccgggtggttttgggtacattcttgccggaatcatggtggggaccacttcctcatatgcttcaaggatggctccgtaactacattggcggggttttactttacttcatctccggtttcctctggtgcttcgtatattcatcacttgaaacgcaatgtctatattcccaaagatgccataccatcaaagcaagcattgctgttgcaaatatcaggtgctatgaaagctatgccgtggtactgtgcccttccatcactttctgagtacatgattgaaaacggatggaccaaatgttttgcgagaataagtgatgttggatggcctacctacatcatcaatgcggctatttatcttgtaatagtggagtttggaatctactggatgcacaagttattgcatgacataaaacctctgcataaatatctgcatgctacacatgatatttaca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0010E18-vqLN4/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02SLe0010E18.1" temp_strand="+" temp_description="C02SLe0010E18.1  AC215443.1 htgs_phase:3 submitted_to_sgn_as:C02SLe0010E18 sequenced_by:kribb upload_account_name:korea">
        <position start="96808" stop="98553"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="97108" g_stop="97391" g_length="284"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="285" r_length="285" r_score="0.968"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="97392" i_stop="97977" i_length="586">
            <donor d_prob="0.999" d_score="0.94"/>
            <acceptor a_prob="0.776" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="97978" g_stop="98253" g_length="276"/>
          <reference_exon_boundary r_type="cDNA" r_start="286" r_stop="561" r_length="276" r_score="0.986"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLe0010E18.1" gen_strand="+" ref_id="SGN-E310397" ref_strand="+">
        <total_alignment_score>0.977</total_alignment_score>
        <cumulative_length_of_scored_exons>560</cumulative_length_of_scored_exons>
        <coverage percentage="0.998" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0010E18.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E310397" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="97108" e_stop="97391"/>
          <exon e_start="97978" e_stop="98253"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CGCCGGAGTCTGGTAAAACCCGACCCGAGACGGACATATTTCTCTTTTACCTAGTATACCGTCGGAGATGGAGGATTACTTGAAGCTATTCGTGGAGGAGACATCGTTTTACAACCGTCTGGTTTTGGGTACATTCTTGCCGGAATCATGGTGGGGACCACTTCCTCATATGCTTCAAGGATGGCTCCGTAACTACATTGGCGGTGTTTTACTTTACTTCATCTCCGGTTTCCTCTGGTGCTTC-TATATTTATCACTTGAAACGCAATGTCTATATTCCCAAAGGTATTGATTTCTTTTTTCCCTTTTTCTCCCGTGAAAGTTTTTTTATTTATTTATTTTTTGTGTATAGATGATTTCTTTGCATTATTGGAAATTTTCAAGTTAATGAATTACGTTGACTGTTTTAGTAACGCTTGTGAAGGTTGGATTCTGAATATTCACTCTTTTGATTTGAATATTTTGGCATTTTTTGGGTGCTACTGTATTTGAAGTAGGTAAAGAGTAAGAAGCATATTCCCATTTTATAGTGTATTGATATGTAGAGCAATTACTGTGGATCTGAAACTATCATGTATCAGTAACTCTGACTAGAAAATACGAGAAGAAATCACCTAGTGTTTTGTCTCTGTTGGTATTTGAACCTGAGACGTTATTCTTACTCAACCCACCTGATTGACAGTAGGCCACCTCCTTGTGTATATTTGTGGTCCCGTTAGTTCAAACTAGGGATGTCAATACCTCAGATGAATTTAACAATTCTAGGTTTTTACGATTCGATAAAGATAAAGAGTAATTAATGTTTTGTATTTTCTCCCGTTTGGTTAAAAAGAGGAAATTATATATGGGCTGATGAACAGTTTGATTGCAGATGCCATACCATCAAAGCAAGCAATGCTGTTGCAAATATCAGTTGCTATGAAAGCTATGCCGTGGTACTGTGCCCTTCCATCACTTTCTGAGTACATGATTGAAAACGGATGGACCAAATGTTTTGCGAGAATAAGTGATGTTGGATGGCCTACCTACATCATCAATGCGGCTATTTATCTTGTAATAGTGGAGTTTGGAATCTACTGGATGCACAAGTTATTGCATGACATAAAACCTCTGTATAAATATCTGCATGCTACACATCATATTTACA</genome_strand>
        <mrna_strand>CGCCGGAGTCTGGTTTAACCCGACCCGAGACGGACATATTTCTCTTTTACCTAGTATACCGCCGGAGATGGAGGATTACTTGAAGCTATTCGTGGAGGAGACATCGTTTTACAACCGGGTGGTTTTGGGTACATTCTTGCCGGAATCATGGTGGGGACCACTTCCTCATATGCTTCAAGGATGGCTCCGTAACTACATTGGCGGGGTTTTACTTTACTTCATCTCCGGTTTCCTCTGGTGCTTCGTATATTCATCACTTGAAACGCAATGTCTATATTCCCAAAG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATGCCATACCATCAAAGCAAGCATTGCTGTTGCAAATATCAGGTGCTATGAAAGCTATGCCGTGGTACTGTGCCCTTCCATCACTTTCTGAGTACATGATTGAAAACGGATGGACCAAATGTTTTGCGAGAATAAGTGATGTTGGATGGCCTACCTACATCATCAATGCGGCTATTTATCTTGTAATAGTGGAGTTTGGAATCTACTGGATGCACAAGTTATTGCATGACATAAAACCTCTGCATAAATATCTGCATGCTACACATGATATTTACA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0010E18-vqLN4/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E340155" ref_strand="+" ref_description="SGN-E340155 [cTOF-2-K3]">
      <seq>aggattacttgaagctattcgtggaggagacatcgttttacaaccgtctggttttgggtacattcttgccggaatcatggtggggaccacttcctcatatgcttcaaggatggctccgtaactacattggcggtgttttactttacttcatctccggtttcctctggtgcttctatatttatcacttgaaacgcaatgtctatattcccaaagatgccataccatcaaagcaagcaatgctgttgcaaatatcagttgctatgaaagctatgccgtggtactgtgcccttccatcactttctgagtacatgattgaaaacggatggaccaaatgttttgcgagaataagtgatgttggatggcctacctacatcatcaatgcggctatttatcttgtaatagtggagtttggaatctactggatgcacaagttattgcatgacataaaacctctgtataaatatctgcatgctacacatcatatttacaacaagcaaaacacactttccccatttgctggattggcattccacccattggatggaatactgcaggcagtgccacacgttgtagctcttttcttggtgccaatgcatttcactacacacatagtgctcata</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0010E18-vqLN4/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02SLe0010E18.1" temp_strand="+" temp_description="C02SLe0010E18.1  AC215443.1 htgs_phase:3 submitted_to_sgn_as:C02SLe0010E18 sequenced_by:kribb upload_account_name:korea">
        <position start="96879" stop="99392"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="97179" g_stop="97391" g_length="213"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="213" r_length="213" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="97392" i_stop="97977" i_length="586">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.776" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="97978" g_stop="98283" g_length="306"/>
          <reference_exon_boundary r_type="cDNA" r_start="214" r_stop="519" r_length="306" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="98284" i_stop="98991" i_length="708">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="98992" g_stop="99092" g_length="101"/>
          <reference_exon_boundary r_type="cDNA" r_start="520" r_stop="620" r_length="101" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLe0010E18.1" gen_strand="+" ref_id="SGN-E340155" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>620</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0010E18.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E340155" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="97179" e_stop="97391"/>
          <exon e_start="97978" e_stop="98283"/>
          <exon e_start="98992" e_stop="99092"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGGATTACTTGAAGCTATTCGTGGAGGAGACATCGTTTTACAACCGTCTGGTTTTGGGTACATTCTTGCCGGAATCATGGTGGGGACCACTTCCTCATATGCTTCAAGGATGGCTCCGTAACTACATTGGCGGTGTTTTACTTTACTTCATCTCCGGTTTCCTCTGGTGCTTCTATATTTATCACTTGAAACGCAATGTCTATATTCCCAAAGGTATTGATTTCTTTTTTCCCTTTTTCTCCCGTGAAAGTTTTTTTATTTATTTATTTTTTGTGTATAGATGATTTCTTTGCATTATTGGAAATTTTCAAGTTAATGAATTACGTTGACTGTTTTAGTAACGCTTGTGAAGGTTGGATTCTGAATATTCACTCTTTTGATTTGAATATTTTGGCATTTTTTGGGTGCTACTGTATTTGAAGTAGGTAAAGAGTAAGAAGCATATTCCCATTTTATAGTGTATTGATATGTAGAGCAATTACTGTGGATCTGAAACTATCATGTATCAGTAACTCTGACTAGAAAATACGAGAAGAAATCACCTAGTGTTTTGTCTCTGTTGGTATTTGAACCTGAGACGTTATTCTTACTCAACCCACCTGATTGACAGTAGGCCACCTCCTTGTGTATATTTGTGGTCCCGTTAGTTCAAACTAGGGATGTCAATACCTCAGATGAATTTAACAATTCTAGGTTTTTACGATTCGATAAAGATAAAGAGTAATTAATGTTTTGTATTTTCTCCCGTTTGGTTAAAAAGAGGAAATTATATATGGGCTGATGAACAGTTTGATTGCAGATGCCATACCATCAAAGCAAGCAATGCTGTTGCAAATATCAGTTGCTATGAAAGCTATGCCGTGGTACTGTGCCCTTCCATCACTTTCTGAGTACATGATTGAAAACGGATGGACCAAATGTTTTGCGAGAATAAGTGATGTTGGATGGCCTACCTACATCATCAATGCGGCTATTTATCTTGTAATAGTGGAGTTTGGAATCTACTGGATGCACAAGTTATTGCATGACATAAAACCTCTGTATAAATATCTGCATGCTACACATCATATTTACAACAAGCAAAACACACTTTCCCCATTTGCTGGTAAGCTCTTAAGTCTACTCATACCATATTGGTGCTTATTTCTGAAAACAACTTCTAGCTCGTGGAGCCATTAGGTGTCTCTGTGATACTTTATTGATAGTTTGTTGAATTAGTGAGCGTCTTAGTTGCGCGGATTCTTCACTTTTGATTCTCGGATTCTTCAAAAATACACTACTTTTGGCTAATCCGACACGCAACCCCTTGACATTTTTGAAGAGTCCGAGCAACATAAGTGAGTGTTTCCTTTGTGATGACTAAAAACGTTGAAAAGCTAGTCACGAGGACATTAAATTAATATGTGTATTTTAACATTCATGTCTTCAGTCGGTGCATCATTTCGTTTCGTGGTCAGGAGAGTCGAGTGTTGACTTAGGTATTTGGTTAGACTAGGGAATAACTGAACACATTGGAATTTCGTCTCTTGCCTTTTAATTGTTTCTGTGTGCCAAAATCCAGTTTAGTTGAAAAGAGTGGAGTAGCGTTTGATAACCGTTTTGTTGTTATTTTCTCCTTTCCTTTTGTTGGAAACTAGAACTTGTTACAGGATTGAGGAAAGAAAAATATTAAGCAGTTAATTTTATGGTTAGTTGTGTGTTGTAATTTCTGATGCTCTATCGAAGCTAATTTGACCTCTTGAGAGTCATGGCTTCTTTTATGTTTTATCTGGTACATTTTCAAGCTAATTGCTAAACATGTTCTGTTATTCAGGATTGGCATTCCACCCATTGGATGGAATACTGCAGGCAGTGCCACACGTTGTAGCTCTTTTCTTGGTGCCAATGCATTTCACTACACACATAGTGCTCATA</genome_strand>
        <mrna_strand>AGGATTACTTGAAGCTATTCGTGGAGGAGACATCGTTTTACAACCGTCTGGTTTTGGGTACATTCTTGCCGGAATCATGGTGGGGACCACTTCCTCATATGCTTCAAGGATGGCTCCGTAACTACATTGGCGGTGTTTTACTTTACTTCATCTCCGGTTTCCTCTGGTGCTTCTATATTTATCACTTGAAACGCAATGTCTATATTCCCAAAG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATGCCATACCATCAAAGCAAGCAATGCTGTTGCAAATATCAGTTGCTATGAAAGCTATGCCGTGGTACTGTGCCCTTCCATCACTTTCTGAGTACATGATTGAAAACGGATGGACCAAATGTTTTGCGAGAATAAGTGATGTTGGATGGCCTACCTACATCATCAATGCGGCTATTTATCTTGTAATAGTGGAGTTTGGAATCTACTGGATGCACAAGTTATTGCATGACATAAAACCTCTGTATAAATATCTGCATGCTACACATCATATTTACAACAAGCAAAACACACTTTCCCCATTTGCTG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATTGGCATTCCACCCATTGGATGGAATACTGCAGGCAGTGCCACACGTTGTAGCTCTTTTCTTGGTGCCAATGCATTTCACTACACACATAGTGCTCATA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0010E18-vqLN4/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E347565" ref_strand="+" ref_description="SGN-E347565 [cTOF-26-G2]">
      <seq>tatttatcacttgaaacgcaatgtctatattcccaaatatgccataccatgaaagcaagcaatgctgttgcaaatatcagatgctatgaaagctatgccgtggtactgtgccctaccatcactatctgagtacatgattgaaaacggatggaccaaatgttttgcgagaataagtgatgttggatggcctacctacatcatcaatgcggctatttatcttgtaatagtggagtatggaatctactggatgcacaagttgttgcatgacataaaacctctgtataaatatctgcatgctgcacatcatatttacaactagcaaaacacactatccccatatgctggattggcattccacccattggatggaatactgcatgcactgccacacatagtagctcttttcttggtgccaatgcatttcactacacacatagagctgatatctctggaagccttatggacggctaatattcatgactgcatacatggtaaggtgtggcactgaatgggtgccggttatcatacca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0010E18-vqLN4/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02SLe0010E18.1" temp_strand="+" temp_description="C02SLe0010E18.1  AC215443.1 htgs_phase:3 submitted_to_sgn_as:C02SLe0010E18 sequenced_by:kribb upload_account_name:korea">
        <position start="97054" stop="99477"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="97354" g_stop="97391" g_length="38"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="38" r_length="38" r_score="0.974"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="97392" i_stop="97977" i_length="586">
            <donor d_prob="0.999" d_score="0.00"/>
            <acceptor a_prob="0.776" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="97978" g_stop="98283" g_length="306"/>
          <reference_exon_boundary r_type="cDNA" r_start="39" r_stop="344" r_length="306" r_score="0.967"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="98284" i_stop="98991" i_length="708">
            <donor d_prob="0.999" d_score="0.92"/>
            <acceptor a_prob="0.999" a_score="0.92"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="98992" g_stop="99177" g_length="186"/>
          <reference_exon_boundary r_type="cDNA" r_start="345" r_stop="530" r_length="186" r_score="0.930"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLe0010E18.1" gen_strand="+" ref_id="SGN-E347565" ref_strand="+">
        <total_alignment_score>0.953</total_alignment_score>
        <cumulative_length_of_scored_exons>530</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0010E18.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E347565" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="97354" e_stop="97391"/>
          <exon e_start="97978" e_stop="98283"/>
          <exon e_start="98992" e_stop="99177"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TATTTATCACTTGAAACGCAATGTCTATATTCCCAAAGGTATTGATTTCTTTTTTCCCTTTTTCTCCCGTGAAAGTTTTTTTATTTATTTATTTTTTGTGTATAGATGATTTCTTTGCATTATTGGAAATTTTCAAGTTAATGAATTACGTTGACTGTTTTAGTAACGCTTGTGAAGGTTGGATTCTGAATATTCACTCTTTTGATTTGAATATTTTGGCATTTTTTGGGTGCTACTGTATTTGAAGTAGGTAAAGAGTAAGAAGCATATTCCCATTTTATAGTGTATTGATATGTAGAGCAATTACTGTGGATCTGAAACTATCATGTATCAGTAACTCTGACTAGAAAATACGAGAAGAAATCACCTAGTGTTTTGTCTCTGTTGGTATTTGAACCTGAGACGTTATTCTTACTCAACCCACCTGATTGACAGTAGGCCACCTCCTTGTGTATATTTGTGGTCCCGTTAGTTCAAACTAGGGATGTCAATACCTCAGATGAATTTAACAATTCTAGGTTTTTACGATTCGATAAAGATAAAGAGTAATTAATGTTTTGTATTTTCTCCCGTTTGGTTAAAAAGAGGAAATTATATATGGGCTGATGAACAGTTTGATTGCAGATGCCATACCATCAAAGCAAGCAATGCTGTTGCAAATATCAGTTGCTATGAAAGCTATGCCGTGGTACTGTGCCCTTCCATCACTTTCTGAGTACATGATTGAAAACGGATGGACCAAATGTTTTGCGAGAATAAGTGATGTTGGATGGCCTACCTACATCATCAATGCGGCTATTTATCTTGTAATAGTGGAGTTTGGAATCTACTGGATGCACAAGTTATTGCATGACATAAAACCTCTGTATAAATATCTGCATGCTACACATCATATTTACAACAAGCAAAACACACTTTCCCCATTTGCTGGTAAGCTCTTAAGTCTACTCATACCATATTGGTGCTTATTTCTGAAAACAACTTCTAGCTCGTGGAGCCATTAGGTGTCTCTGTGATACTTTATTGATAGTTTGTTGAATTAGTGAGCGTCTTAGTTGCGCGGATTCTTCACTTTTGATTCTCGGATTCTTCAAAAATACACTACTTTTGGCTAATCCGACACGCAACCCCTTGACATTTTTGAAGAGTCCGAGCAACATAAGTGAGTGTTTCCTTTGTGATGACTAAAAACGTTGAAAAGCTAGTCACGAGGACATTAAATTAATATGTGTATTTTAACATTCATGTCTTCAGTCGGTGCATCATTTCGTTTCGTGGTCAGGAGAGTCGAGTGTTGACTTAGGTATTTGGTTAGACTAGGGAATAACTGAACACATTGGAATTTCGTCTCTTGCCTTTTAATTGTTTCTGTGTGCCAAAATCCAGTTTAGTTGAAAAGAGTGGAGTAGCGTTTGATAACCGTTTTGTTGTTATTTTCTCCTTTCCTTTTGTTGGAAACTAGAACTTGTTACAGGATTGAGGAAAGAAAAATATTAAGCAGTTAATTTTATGGTTAGTTGTGTGTTGTAATTTCTGATGCTCTATCGAAGCTAATTTGACCTCTTGAGAGTCATGGCTTCTTTTATGTTTTATCTGGTACATTTTCAAGCTAATTGCTAAACATGTTCTGTTATTCAGGATTGGCATTCCACCCATTGGATGGAATACTGCAGGCAGTGCCACACGTTGTAGCTCTTTTCTTGGTGCCAATGCATTTCACTACACACATAGTGCTCATATTCGTGGAAGCCTTATGGACGGCTAATATTCATGACTGCATACATGGTAAGGTGTGGCCTGTAATGGGTGCCGGTTATCATACCA</genome_strand>
        <mrna_strand>TATTTATCACTTGAAACGCAATGTCTATATTCCCAAAT..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATGCCATACCATGAAAGCAAGCAATGCTGTTGCAAATATCAGATGCTATGAAAGCTATGCCGTGGTACTGTGCCCTACCATCACTATCTGAGTACATGATTGAAAACGGATGGACCAAATGTTTTGCGAGAATAAGTGATGTTGGATGGCCTACCTACATCATCAATGCGGCTATTTATCTTGTAATAGTGGAGTATGGAATCTACTGGATGCACAAGTTGTTGCATGACATAAAACCTCTGTATAAATATCTGCATGCTGCACATCATATTTACAACTAGCAAAACACACTATCCCCATATGCTG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATTGGCATTCCACCCATTGGATGGAATACTGCATGCACTGCCACACATAGTAGCTCTTTTCTTGGTGCCAATGCATTTCACTACACACATAGAGCTGATATCTCTGGAAGCCTTATGGACGGCTAATATTCATGACTGCATACATGGTAAGGTGTGGCACTGAATGGGTGCCGGTTATCATACCA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0010E18-vqLN4/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E290981" ref_strand="+" ref_description="SGN-E290981 [cLET-8-O24]">
      <seq>gaaaacggatggaccaaatgttttgcgagaataagtgatgttggatggcctacctacatcatcaatgcggctatttatcttgtaatagtggagtttggaatctactggatgcacaagttattgcatgacataaaacctctgtataaatatctgcatgctacacatcatatttacaacaagcaaaacacactttccccatttgctggattggcattccacccattggatggaatactgcaggcagtgccacacgttgtagctcttttcttggtgccaatgcatttcactacacacatagtgctcatattcgtggaagccttatggacggctaatattcatgactgcatacatggtaaggtgtggcctgtaatgggtgccggttatcataccattcaccatacaacataccgccataattatggtcattacacaatatggatggactggatgtttggaac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0010E18-vqLN4/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02SLe0010E18.1" temp_strand="+" temp_description="C02SLe0010E18.1  AC215443.1 htgs_phase:3 submitted_to_sgn_as:C02SLe0010E18 sequenced_by:kribb upload_account_name:korea">
        <position start="97779" stop="99544"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="98079" g_stop="98283" g_length="205"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="205" r_length="205" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="98284" i_stop="98991" i_length="708">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="98992" g_stop="99244" g_length="253"/>
          <reference_exon_boundary r_type="cDNA" r_start="206" r_stop="458" r_length="253" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLe0010E18.1" gen_strand="+" ref_id="SGN-E290981" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>458</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0010E18.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E290981" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="98079" e_stop="98283"/>
          <exon e_start="98992" e_stop="99244"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAAAACGGATGGACCAAATGTTTTGCGAGAATAAGTGATGTTGGATGGCCTACCTACATCATCAATGCGGCTATTTATCTTGTAATAGTGGAGTTTGGAATCTACTGGATGCACAAGTTATTGCATGACATAAAACCTCTGTATAAATATCTGCATGCTACACATCATATTTACAACAAGCAAAACACACTTTCCCCATTTGCTGGTAAGCTCTTAAGTCTACTCATACCATATTGGTGCTTATTTCTGAAAACAACTTCTAGCTCGTGGAGCCATTAGGTGTCTCTGTGATACTTTATTGATAGTTTGTTGAATTAGTGAGCGTCTTAGTTGCGCGGATTCTTCACTTTTGATTCTCGGATTCTTCAAAAATACACTACTTTTGGCTAATCCGACACGCAACCCCTTGACATTTTTGAAGAGTCCGAGCAACATAAGTGAGTGTTTCCTTTGTGATGACTAAAAACGTTGAAAAGCTAGTCACGAGGACATTAAATTAATATGTGTATTTTAACATTCATGTCTTCAGTCGGTGCATCATTTCGTTTCGTGGTCAGGAGAGTCGAGTGTTGACTTAGGTATTTGGTTAGACTAGGGAATAACTGAACACATTGGAATTTCGTCTCTTGCCTTTTAATTGTTTCTGTGTGCCAAAATCCAGTTTAGTTGAAAAGAGTGGAGTAGCGTTTGATAACCGTTTTGTTGTTATTTTCTCCTTTCCTTTTGTTGGAAACTAGAACTTGTTACAGGATTGAGGAAAGAAAAATATTAAGCAGTTAATTTTATGGTTAGTTGTGTGTTGTAATTTCTGATGCTCTATCGAAGCTAATTTGACCTCTTGAGAGTCATGGCTTCTTTTATGTTTTATCTGGTACATTTTCAAGCTAATTGCTAAACATGTTCTGTTATTCAGGATTGGCATTCCACCCATTGGATGGAATACTGCAGGCAGTGCCACACGTTGTAGCTCTTTTCTTGGTGCCAATGCATTTCACTACACACATAGTGCTCATATTCGTGGAAGCCTTATGGACGGCTAATATTCATGACTGCATACATGGTAAGGTGTGGCCTGTAATGGGTGCCGGTTATCATACCATTCACCATACAACATACCGCCATAATTATGGTCATTACACAATATGGATGGACTGGATGTTTGGAAC</genome_strand>
        <mrna_strand>GAAAACGGATGGACCAAATGTTTTGCGAGAATAAGTGATGTTGGATGGCCTACCTACATCATCAATGCGGCTATTTATCTTGTAATAGTGGAGTTTGGAATCTACTGGATGCACAAGTTATTGCATGACATAAAACCTCTGTATAAATATCTGCATGCTACACATCATATTTACAACAAGCAAAACACACTTTCCCCATTTGCTG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATTGGCATTCCACCCATTGGATGGAATACTGCAGGCAGTGCCACACGTTGTAGCTCTTTTCTTGGTGCCAATGCATTTCACTACACACATAGTGCTCATATTCGTGGAAGCCTTATGGACGGCTAATATTCATGACTGCATACATGGTAAGGTGTGGCCTGTAATGGGTGCCGGTTATCATACCATTCACCATACAACATACCGCCATAATTATGGTCATTACACAATATGGATGGACTGGATGTTTGGAAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0010E18-vqLN4/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E713906" ref_strand="+" ref_description="SGN-E713906 [FB10AA02]">
      <seq>cgcataagttattgcatgacataaaacctctgtataaatatctgcatgctacacatcatatttacaacaagcaaaacacactttccccatttgctggattggcattccacccattggatggaatactgcaggcagtgccacacgttgtagctcttttcttggtgccaatgcatttcactacacacatagtgctcatattcgtggaagccttatggacggctaatattcatgactgcatacatggtaaggtgtggcctgtaatgggtgccggttatcataccattcaccatacaacataccgccataattatggtcattacacaatatggatggactggatgtttggaactcttcgtgatcccgttgaagaggatgccaagaaaatgtaatgtgcatgatttgcactcaaggatgttccttattgttaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0010E18-vqLN4/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02SLe0010E18.1" temp_strand="+" temp_description="C02SLe0010E18.1  AC215443.1 htgs_phase:3 submitted_to_sgn_as:C02SLe0010E18 sequenced_by:kribb upload_account_name:korea">
        <position start="97889" stop="99623"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="98188" g_stop="98283" g_length="96"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="96" r_length="96" r_score="0.979"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="98284" i_stop="98991" i_length="708">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="98992" g_stop="99318" g_length="327"/>
          <reference_exon_boundary r_type="cDNA" r_start="97" r_stop="423" r_length="327" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="427" polyA_stop="443"/>
      <MATCH_line gen_id="C02SLe0010E18.1" gen_strand="+" ref_id="SGN-E713906" ref_strand="+">
        <total_alignment_score>0.995</total_alignment_score>
        <cumulative_length_of_scored_exons>423</cumulative_length_of_scored_exons>
        <coverage percentage="0.955" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0010E18.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E713906" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="98188" e_stop="98283"/>
          <exon e_start="98992" e_stop="99318"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGCACAAGTTATTGCATGACATAAAACCTCTGTATAAATATCTGCATGCTACACATCATATTTACAACAAGCAAAACACACTTTCCCCATTTGCTGGTAAGCTCTTAAGTCTACTCATACCATATTGGTGCTTATTTCTGAAAACAACTTCTAGCTCGTGGAGCCATTAGGTGTCTCTGTGATACTTTATTGATAGTTTGTTGAATTAGTGAGCGTCTTAGTTGCGCGGATTCTTCACTTTTGATTCTCGGATTCTTCAAAAATACACTACTTTTGGCTAATCCGACACGCAACCCCTTGACATTTTTGAAGAGTCCGAGCAACATAAGTGAGTGTTTCCTTTGTGATGACTAAAAACGTTGAAAAGCTAGTCACGAGGACATTAAATTAATATGTGTATTTTAACATTCATGTCTTCAGTCGGTGCATCATTTCGTTTCGTGGTCAGGAGAGTCGAGTGTTGACTTAGGTATTTGGTTAGACTAGGGAATAACTGAACACATTGGAATTTCGTCTCTTGCCTTTTAATTGTTTCTGTGTGCCAAAATCCAGTTTAGTTGAAAAGAGTGGAGTAGCGTTTGATAACCGTTTTGTTGTTATTTTCTCCTTTCCTTTTGTTGGAAACTAGAACTTGTTACAGGATTGAGGAAAGAAAAATATTAAGCAGTTAATTTTATGGTTAGTTGTGTGTTGTAATTTCTGATGCTCTATCGAAGCTAATTTGACCTCTTGAGAGTCATGGCTTCTTTTATGTTTTATCTGGTACATTTTCAAGCTAATTGCTAAACATGTTCTGTTATTCAGGATTGGCATTCCACCCATTGGATGGAATACTGCAGGCAGTGCCACACGTTGTAGCTCTTTTCTTGGTGCCAATGCATTTCACTACACACATAGTGCTCATATTCGTGGAAGCCTTATGGACGGCTAATATTCATGACTGCATACATGGTAAGGTGTGGCCTGTAATGGGTGCCGGTTATCATACCATTCACCATACAACATACCGCCATAATTATGGTCATTACACAATATGGATGGACTGGATGTTTGGAACTCTTCGTGATCCCGTTGAAGAGGATGCCAAGAAAATGTAATGTGCATGATTTGCACTCAAGGATGTTCCTTATT</genome_strand>
        <mrna_strand>CGCATAAGTTATTGCATGACATAAAACCTCTGTATAAATATCTGCATGCTACACATCATATTTACAACAAGCAAAACACACTTTCCCCATTTGCTG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATTGGCATTCCACCCATTGGATGGAATACTGCAGGCAGTGCCACACGTTGTAGCTCTTTTCTTGGTGCCAATGCATTTCACTACACACATAGTGCTCATATTCGTGGAAGCCTTATGGACGGCTAATATTCATGACTGCATACATGGTAAGGTGTGGCCTGTAATGGGTGCCGGTTATCATACCATTCACCATACAACATACCGCCATAATTATGGTCATTACACAATATGGATGGACTGGATGTTTGGAACTCTTCGTGATCCCGTTGAAGAGGATGCCAAGAAAATGTAATGTGCATGATTTGCACTCAAGGATGTTCCTTATT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
    <total_number_ESTs_reported>50</total_number_ESTs_reported>
    </alignment_module>
  <PGL_module xmlns="http://www.genomethreader.org/GTH_output/PGL_module/">
    <predicted_gene_location>
      <PGL_line PGL_serial="1" PGL_strand="+" PGL_start="15166" PGL_stop="18159"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="15166" e_stop="15350"/>
            <exon e_start="15948" e_stop="16179"/>
            <exon e_start="16884" e_stop="16984"/>
            <exon e_start="17269" e_stop="17397"/>
            <exon e_start="17481" e_stop="17569"/>
            <exon e_start="17961" e_stop="18159"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="1.000" acc_prob="0.504" e_score="0.962"/>
          <exon-intron don_prob="0.973" acc_prob="0.999" e_score="1.000"/>
          <exon-intron don_prob="0.997" acc_prob="0.755" e_score="1.000"/>
          <exon-intron don_prob="0.985" acc_prob="0.971" e_score="1.000"/>
          <exon-intron don_prob="0.968" acc_prob="0.994" e_score="1.000"/>
          <exon-only e_score="0.990"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.962">
            <gDNA_exon_boundary e_start="15166" e_stop="15350" e_length="185"/>
          </exon>
          <intron i_serial="1" don_prob="1.000" acc_prob="0.504">
            <gDNA_intron_boundary i_start="15351" i_stop="15947" i_length="597"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="15948" e_stop="16179" e_length="232"/>
          </exon>
          <intron i_serial="2" don_prob="0.973" acc_prob="0.999">
            <gDNA_intron_boundary i_start="16180" i_stop="16883" i_length="704"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="16884" e_stop="16984" e_length="101"/>
          </exon>
          <intron i_serial="3" don_prob="0.997" acc_prob="0.755">
            <gDNA_intron_boundary i_start="16985" i_stop="17268" i_length="284"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="17269" e_stop="17397" e_length="129"/>
          </exon>
          <intron i_serial="4" don_prob="0.985" acc_prob="0.971">
            <gDNA_intron_boundary i_start="17398" i_stop="17480" i_length="83"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="17481" e_stop="17569" e_length="89"/>
          </exon>
          <intron i_serial="5" don_prob="0.968" acc_prob="0.994">
            <gDNA_intron_boundary i_start="17570" i_stop="17960" i_length="391"/>
          </intron>
          <exon e_serial="6" e_score="0.990">
            <gDNA_exon_boundary e_start="17961" e_stop="18159" e_length="199"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="15166" stop="15350"/>
              <exon start="15948" stop="16154"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E275036" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="15204" stop="15350"/>
              <exon start="15948" stop="16179"/>
              <exon start="16884" stop="16984"/>
              <exon start="17269" stop="17397"/>
              <exon start="17481" stop="17569"/>
              <exon start="17961" stop="18159"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E702377" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="1" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>GGGCCAGGGCTCATGATTTATCATTCTGTTGGTGAAACCTCTCATTACTGTACTTGCAATGTTTAATTTTATTTTCCAGATGCCATTTTTGCTATAATTCTTATTGTTGTTGCTCGCAATTCTCACACCCATCAACCATGGCCTTATCTTCTACTTGCTTTTCTCACTCTCAATTCTCACTCAAG : ATGGACTGCTGGACGCCTGCTCTGTCATCAAATATCCTATGTTATATCAGGAGGAAGCAGCCTCCATCCTCCACACTTAAAACAATAAACTCAAACCTTTTAAGTCAACAAGTTCATAAACGAAGAACCAAGCATGGCAATGGATGGAGTTTCCTCGGAGGATCAAGAGTAAAGTGTCAGCCTAACCTCCAAAATCTTCCACAAAGAAGAAGCTACAGGGTGTCTGCTATGT : GGTTGCCTAGTTCTCAAGTAGCTAGTAGTGTCTTTACGCTAGGAACAGCAGGCGTTCTTCCATTTTACACCGTCATGATTGCAGCACCTAAAGCAGAACTT : ACCAGAAAATTGATGGATAGTGCAATACCATATATTGTGCTCGGACTTCTGTACGCATATCTGTTGTACTTGTCTTGGACACCAGATACAATTCGGCTGATGTTTGCTAGTAAATACTGGCTTCCAGAG : CTGTCTGGTATAGCAAAGATGTTCTCCAGTGAGATGACATTAGCATCTGCTTGGATTCACCTATTGGCTGTAGATCTTTTTGCTGCAAG : GCAAGTTTATCATGATGGCTTGCAAAATGGTATAGAAACGCGCCATTCAGTGTCTCTCTGCTTGCTATTTTGCCCCATTGGGATTGTTATTCATCTCCTCACCAAAGCTGTACTACTAAGTAGTGCAGAAAAAACAGTGTTTAGAACTAACTGACAGAGATTCAACAATTGTTTCCTGTTAACGACTAATGTAATTGTG</gDNA_template>
            <first_frame> G  P  G  L  M  I  Y  H  S  V  G  E  T  S  H  Y  C  T  C  N  V  *  F  Y  F  P  D  A  I  F  A  I  I  L  I  V  V  A  R  N  S  H  T  H  Q  P  W  P  Y  L  L  L  A  F  L  T  L  N  S  H  S  R :   W  T  A  G  R  L  L  C  H  Q  I  S  Y  V  I  S  G  G  S  S  L  H  P  P  H  L  K  Q  *  T  Q  T  F  *  V  N  K  F  I  N  E  E  P  S  M  A  M  D  G  V  S  S  E  D  Q  E  *  S  V  S  L  T  S  K  I  F  H  K  E  E  A  T  G  C  L  L  C  :  G  C  L  V  L  K  *  L  V  V  S  L  R  *  E  Q  Q  A  F  F  H  F  T  P  S  *  L  Q  H  L  K  Q  N  L :   P  E  N  *  W  I  V  Q  Y  H  I  L  C  S  D  F  C  T  H  I  C  C  T  C  L  G  H  Q  I  Q  F  G  *  C  L  L  V  N  T  G  F  Q  S :   C  L  V  *  Q  R  C  S  P  V  R  *  H  *  H  L  L  G  F  T  Y  W  L  *  I  F  L  L  Q   : G  K  F  I  M  M  A  C  K  M  V  *  K  R  A  I  Q  C  L  S  A  C  Y  F  A  P  L  G  L  L  F  I  S  S  P  K  L  Y  Y  *  V  V  Q  K  K  Q  C  L  E  L  T  D  R  D  S  T  I  V  S  C  *  R  L  M  *  L   </first_frame>
            <second_frame>  G  Q  G  S  *  F  I  I  L  L  V  K  P  L  I  T  V  L  A  M  F  N  F  I  F  Q  M  P  F  L  L  *  F  L  L  L  L  L  A  I  L  T  P  I  N  H  G  L  I  F  Y  L  L  F  S  L  S  I  L  T  Q   : D  G  L  L  D  A  C  S  V  I  K  Y  P  M  L  Y  Q  E  E  A  A  S  I  L  H  T  *  N  N  K  L  K  P  F  K  S  T  S  S  *  T  K  N  Q  A  W  Q  W  M  E  F  P  R  R  I  K  S  K  V  S  A  *  P  P  K  S  S  T  K  K  K  L  Q  G  V  C  Y  V :   V  A  *  F  S  S  S  *  *  C  L  Y  A  R  N  S  R  R  S  S  I  L  H  R  H  D  C  S  T  *  S  R  T   : Y  Q  K  I  D  G  *  C  N  T  I  Y  C  A  R  T  S  V  R  I  S  V  V  L  V  L  D  T  R  Y  N  S  A  D  V  C  *  *  I  L  A  S  R   : A  V  W  Y  S  K  D  V  L  Q  *  D  D  I  S  I  C  L  D  S  P  I  G  C  R  S  F  C  C  K  :  A  S  L  S  *  W  L  A  K  W  Y  R  N  A  P  F  S  V  S  L  L  A  I  L  P  H  W  D  C  Y  S  S  P  H  Q  S  C  T  T  K  *  C  R  K  N  S  V  *  N  *  L  T  E  I  Q  Q  L  F  P  V  N  D  *  C  N  C  </second_frame>
            <third_frame>   A  R  A  H  D  L  S  F  C  W  *  N  L  S  L  L  Y  L  Q  C  L  I  L  F  S  R  C  H  F  C  Y  N  S  Y  C  C  C  S  Q  F  S  H  P  S  T  M  A  L  S  S  T  C  F  S  H  S  Q  F  S  L  K  :  M  D  C  W  T  P  A  L  S  S  N  I  L  C  Y  I  R  R  K  Q  P  P  S  S  T  L  K  T  I  N  S  N  L  L  S  Q  Q  V  H  K  R  R  T  K  H  G  N  G  W  S  F  L  G  G  S  R  V  K  C  Q  P  N  L  Q  N  L  P  Q  R  R  S  Y  R  V  S  A  M   : W  L  P  S  S  Q  V  A  S  S  V  F  T  L  G  T  A  G  V  L  P  F  Y  T  V  M  I  A  A  P  K  A  E  L  :  T  R  K  L  M  D  S  A  I  P  Y  I  V  L  G  L  L  Y  A  Y  L  L  Y  L  S  W  T  P  D  T  I  R  L  M  F  A  S  K  Y  W  L  P  E  :  L  S  G  I  A  K  M  F  S  S  E  M  T  L  A  S  A  W  I  H  L  L  A  V  D  L  F  A  A  R :   Q  V  Y  H  D  G  L  Q  N  G  I  E  T  R  H  S  V  S  L  C  L  L  F  C  P  I  G  I  V  I  H  L  L  T  K  A  V  L  L  S  S  A  E  K  T  V  F  R  T  N  *  Q  R  F  N  N  C  F  L  L  T  T  N  V  I  V </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02SLe0010E18.1" strand="+"/>
                <serials PGL_serial="1" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="15201" stop="15350"/>
                    <exon start="15948" stop="16179"/>
                    <exon start="16884" stop="16984"/>
                    <exon start="17269" stop="17397"/>
                    <exon start="17481" stop="17569"/>
                    <exon start="17961" stop="18114"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>852</number_coding_nucleotides>
                  <number_encoded_amino_acids>284</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>NLSLLYLQCLILFSRCHFCYNSYCCCSQFSHPSTMALSSTCFSHSQFSLKMDCWTPALSSNILCYIRRKQPPSSTLKTINSNLLSQQVHKRRTKHGNGWSFLGGSRVKCQPNLQNLPQRRSYRVSAMWLPSSQVASSVFTLGTAGVLPFYTVMIAAPKAELTRKLMDSAIPYIVLGLLYAYLLYLSWTPDTIRLMFASKYWLPELSGIAKMFSSEMTLASAWIHLLAVDLFAARQVYHDGLQNGIETRHSVSLCLLFCPIGIVIHLLTKAVLLSSAEKTVFRTN*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="2" PGL_strand="+" PGL_start="34357" PGL_stop="37455"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="34357" e_stop="34710"/>
            <exon e_start="35060" e_stop="35104"/>
            <exon e_start="35270" e_stop="35399"/>
            <exon e_start="35524" e_stop="35605"/>
            <exon e_start="35689" e_stop="35737"/>
            <exon e_start="35978" e_stop="36075"/>
            <exon e_start="36697" e_stop="36835"/>
            <exon e_start="36962" e_stop="37455"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.994" acc_prob="0.999" e_score="1.000"/>
          <exon-intron don_prob="1.000" acc_prob="0.926" e_score="1.000"/>
          <exon-intron don_prob="0.000" acc_prob="0.958" e_score="1.000"/>
          <exon-intron don_prob="0.865" acc_prob="0.989" e_score="1.000"/>
          <exon-intron don_prob="0.979" acc_prob="0.815" e_score="1.000"/>
          <exon-intron don_prob="0.852" acc_prob="0.954" e_score="1.000"/>
          <exon-intron don_prob="0.985" acc_prob="0.990" e_score="1.000"/>
          <exon-only e_score="0.963"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="34357" e_stop="34710" e_length="354"/>
          </exon>
          <intron i_serial="1" don_prob="0.994" acc_prob="0.999">
            <gDNA_intron_boundary i_start="34711" i_stop="35059" i_length="349"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="35060" e_stop="35104" e_length="45"/>
          </exon>
          <intron i_serial="2" don_prob="1.000" acc_prob="0.926">
            <gDNA_intron_boundary i_start="35105" i_stop="35269" i_length="165"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="35270" e_stop="35399" e_length="130"/>
          </exon>
          <intron i_serial="3" don_prob="0.000" acc_prob="0.958">
            <gDNA_intron_boundary i_start="35400" i_stop="35523" i_length="124"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="35524" e_stop="35605" e_length="82"/>
          </exon>
          <intron i_serial="4" don_prob="0.865" acc_prob="0.989">
            <gDNA_intron_boundary i_start="35606" i_stop="35688" i_length="83"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="35689" e_stop="35737" e_length="49"/>
          </exon>
          <intron i_serial="5" don_prob="0.979" acc_prob="0.815">
            <gDNA_intron_boundary i_start="35738" i_stop="35977" i_length="240"/>
          </intron>
          <exon e_serial="6" e_score="1.000">
            <gDNA_exon_boundary e_start="35978" e_stop="36075" e_length="98"/>
          </exon>
          <intron i_serial="6" don_prob="0.852" acc_prob="0.954">
            <gDNA_intron_boundary i_start="36076" i_stop="36696" i_length="621"/>
          </intron>
          <exon e_serial="7" e_score="1.000">
            <gDNA_exon_boundary e_start="36697" e_stop="36835" e_length="139"/>
          </exon>
          <intron i_serial="7" don_prob="0.985" acc_prob="0.990">
            <gDNA_intron_boundary i_start="36836" i_stop="36961" i_length="126"/>
          </intron>
          <exon e_serial="8" e_score="0.963">
            <gDNA_exon_boundary e_start="36962" e_stop="37455" e_length="494"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="34357" stop="34710"/>
              <exon start="35060" stop="35104"/>
              <exon start="35270" stop="35399"/>
              <exon start="35524" stop="35588"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E346757" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="34589" stop="34710"/>
              <exon start="35060" stop="35104"/>
              <exon start="35270" stop="35399"/>
              <exon start="35524" stop="35605"/>
              <exon start="35689" stop="35737"/>
              <exon start="35978" stop="36043"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E248006" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="34589" stop="34710"/>
              <exon start="35060" stop="35104"/>
              <exon start="35270" stop="35308"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E311886" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="35984" stop="36075"/>
              <exon start="36697" stop="36835"/>
              <exon start="36962" stop="37455"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E374219" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="35984" stop="36075"/>
              <exon start="36697" stop="36835"/>
              <exon start="36962" stop="37257"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E305737" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="36004" stop="36075"/>
              <exon start="36697" stop="36835"/>
              <exon start="36962" stop="37453"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E374218" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="2" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>GCAGTTGGAAAAAAGTAGTGAGAAACAATGGCTACGGTCTGTACGTTGATTCTTCCCAAATTTCCTCAATCGAGAGGAGTATCAACAACTCGTGCTGTGTTAAAGAGGGATCCCAAAATGAAGGTTCCTTATGAACTGAAGCAGGAACAATCTCGTCTTTTTCACAAGCTTCCCTCTGGTCTAAACATGGAGGTTCTCTACCAGAGGGGCAGTGACCAGATAAGATCTACTAAAAACCCACCTTTAGTTTTTGTTCATGGAAGCTTTCATGCTGCTTGGTGCTGGGCTGAACACTGGCTCCCCTTCTTCTCCCAAAATGGATATGATTCTTATGCTCTCAGCTTGTTGGGACAG : GGAGAAAGTGATTCACCTGCTGCTGCAGTTGCAGGTACCCTCGAG : ACACATGCTGGTGATATTGCTGACTTCATCCACAAAGAGATCAGGTTGCCACCAGTGTTGCTTGGACATTCATTTGGGGGGCTAATTGTTCAGTATTACATTGCAAATATTAGAAGAGAAGCAGTAAAAG : GTTCTGATTCAGAAAAGAAAAGCTTATTCCCCAATCTTTCTGGAGCAGTGCTCGTTTGCTCAGTACCCCCTTCCGGTAATAG : TGGTTTAGTATGGCGATATCTCTTCTCCAAGCCTCTTGCTGCTTTCAAG : GTAACTCGGAGCCTGGCAGCCAAAGCGTTTCAAACATCTTTACCGCTTTGTAAAGAAACATTTTTCTCAGCAGGAATGGAGGATCAGCTGGTTGCACG : TTACCAAGAGCTAATGACTGAAAGCTCAAGGATGCCTTTGTTTGATCTAAGAAAGCTCAACGCATCTCTTCCTGTATCTCGACTTGAGGATCCTGCATTTAAAGTACTTGTAGTGGGTGCAAAGGATGATTTCATTGTG : GACATGGAAGGACTCAATGAAACAGGAAGATTTTATGGCATCCCAACAGTCTGTATTGAAGGGGTTGCCCATGATATAATGATAGATTGCTCATGGAGAAAGGGTGCACAGCTAATCTTGTCATGGTTAAACAGCTTAAATTAAGCTGGGACACAAATATGAAGGAAAATAGCCCCGTGTTAATGTCCGGTTTTTGTTGGCTAGTTGAAACCACTGCTTTGGCCTTAGATTCAATCAAAGATTGAGAGGTTAAGATAGGATTGAGTTTGTACTTTTTTTATTGGTTGTGGAGATCTGTTGGATATAGATTGATGTCGAGAAACCAACAAAACAGAAAAAGTAGGTTCAGTAGCATGAAATTTTTTGTTAGAAGTTCATAAACAACTTCTTGATTTGGCTTTGATATCCATCTGCTGTTGAATCTTGTAAATTCTGAATGAAATGTGAGGTTTGGTTCCATCAGACACACTTACATGGCTTGAGAATAATATTTT</gDNA_template>
            <first_frame> A  V  G  K  K  *  *  E  T  M  A  T  V  C  T  L  I  L  P  K  F  P  Q  S  R  G  V  S  T  T  R  A  V  L  K  R  D  P  K  M  K  V  P  Y  E  L  K  Q  E  Q  S  R  L  F  H  K  L  P  S  G  L  N  M  E  V  L  Y  Q  R  G  S  D  Q  I  R  S  T  K  N  P  P  L  V  F  V  H  G  S  F  H  A  A  W  C  W  A  E  H  W  L  P  F  F  S  Q  N  G  Y  D  S  Y  A  L  S  L  L  G  Q  :  G  E  S  D  S  P  A  A  A  V  A  G  T  L  E  :  T  H  A  G  D  I  A  D  F  I  H  K  E  I  R  L  P  P  V  L  L  G  H  S  F  G  G  L  I  V  Q  Y  Y  I  A  N  I  R  R  E  A  V  K   : G  S  D  S  E  K  K  S  L  F  P  N  L  S  G  A  V  L  V  C  S  V  P  P  S  G  N  S :   G  L  V  W  R  Y  L  F  S  K  P  L  A  A  F  K  :  V  T  R  S  L  A  A  K  A  F  Q  T  S  L  P  L  C  K  E  T  F  F  S  A  G  M  E  D  Q  L  V  A  R :   Y  Q  E  L  M  T  E  S  S  R  M  P  L  F  D  L  R  K  L  N  A  S  L  P  V  S  R  L  E  D  P  A  F  K  V  L  V  V  G  A  K  D  D  F  I  V  :  D  M  E  G  L  N  E  T  G  R  F  Y  G  I  P  T  V  C  I  E  G  V  A  H  D  I  M  I  D  C  S  W  R  K  G  A  Q  L  I  L  S  W  L  N  S  L  N  *  A  G  T  Q  I  *  R  K  I  A  P  C  *  C  P  V  F  V  G  *  L  K  P  L  L  W  P  *  I  Q  S  K  I  E  R  L  R  *  D  *  V  C  T  F  F  I  G  C  G  D  L  L  D  I  D  *  C  R  E  T  N  K  T  E  K  V  G  S  V  A  *  N  F  L  L  E  V  H  K  Q  L  L  D  L  A  L  I  S  I  C  C  *  I  L  *  I  L  N  E  M  *  G  L  V  P  S  D  T  L  T  W  L  E  N  N  I   </first_frame>
            <second_frame>  Q  L  E  K  S  S  E  K  Q  W  L  R  S  V  R  *  F  F  P  N  F  L  N  R  E  E  Y  Q  Q  L  V  L  C  *  R  G  I  P  K  *  R  F  L  M  N  *  S  R  N  N  L  V  F  F  T  S  F  P  L  V  *  T  W  R  F  S  T  R  G  A  V  T  R  *  D  L  L  K  T  H  L  *  F  L  F  M  E  A  F  M  L  L  G  A  G  L  N  T  G  S  P  S  S  P  K  M  D  M  I  L  M  L  S  A  C  W  D  R :   E  K  V  I  H  L  L  L  Q  L  Q  V  P  S  R :   H  M  L  V  I  L  L  T  S  S  T  K  R  S  G  C  H  Q  C  C  L  D  I  H  L  G  G  *  L  F  S  I  T  L  Q  I  L  E  E  K  Q  *  K  :  V  L  I  Q  K  R  K  A  Y  S  P  I  F  L  E  Q  C  S  F  A  Q  Y  P  L  P  V  I   : V  V  *  Y  G  D  I  S  S  P  S  L  L  L  L  S  R :   *  L  G  A  W  Q  P  K  R  F  K  H  L  Y  R  F  V  K  K  H  F  S  Q  Q  E  W  R  I  S  W  L  H   : V  T  K  S  *  *  L  K  A  Q  G  C  L  C  L  I  *  E  S  S  T  H  L  F  L  Y  L  D  L  R  I  L  H  L  K  Y  L  *  W  V  Q  R  M  I  S  L  W :   T  W  K  D  S  M  K  Q  E  D  F  M  A  S  Q  Q  S  V  L  K  G  L  P  M  I  *  *  *  I  A  H  G  E  R  V  H  S  *  S  C  H  G  *  T  A  *  I  K  L  G  H  K  Y  E  G  K  *  P  R  V  N  V  R  F  L  L  A  S  *  N  H  C  F  G  L  R  F  N  Q  R  L  R  G  *  D  R  I  E  F  V  L  F  L  L  V  V  E  I  C  W  I  *  I  D  V  E  K  P  T  K  Q  K  K  *  V  Q  *  H  E  I  F  C  *  K  F  I  N  N  F  L  I  W  L  *  Y  P  S  A  V  E  S  C  K  F  *  M  K  C  E  V  W  F  H  Q  T  H  L  H  G  L  R  I  I  F  </second_frame>
            <third_frame>   S  W  K  K  V  V  R  N  N  G  Y  G  L  Y  V  D  S  S  Q  I  S  S  I  E  R  S  I  N  N  S  C  C  V  K  E  G  S  Q  N  E  G  S  L  *  T  E  A  G  T  I  S  S  F  S  Q  A  S  L  W  S  K  H  G  G  S  L  P  E  G  Q  *  P  D  K  I  Y  *  K  P  T  F  S  F  C  S  W  K  L  S  C  C  L  V  L  G  *  T  L  A  P  L  L  L  P  K  W  I  *  F  L  C  S  Q  L  V  G  T   : G  R  K  *  F  T  C  C  C  S  C  R  Y  P  R   : D  T  C  W  *  Y  C  *  L  H  P  Q  R  D  Q  V  A  T  S  V  A  W  T  F  I  W  G  A  N  C  S  V  L  H  C  K  Y  *  K  R  S  S  K  R :   F  *  F  R  K  E  K  L  I  P  Q  S  F  W  S  S  A  R  L  L  S  T  P  F  R  *  *  :  W  F  S  M  A  I  S  L  L  Q  A  S  C  C  F  Q   : G  N  S  E  P  G  S  Q  S  V  S  N  I  F  T  A  L  *  R  N  I  F  L  S  R  N  G  G  S  A  G  C  T  :  L  P  R  A  N  D  *  K  L  K  D  A  F  V  *  S  K  K  A  Q  R  I  S  S  C  I  S  T  *  G  S  C  I  *  S  T  C  S  G  C  K  G  *  F  H  C   : G  H  G  R  T  Q  *  N  R  K  I  L  W  H  P  N  S  L  Y  *  R  G  C  P  *  Y  N  D  R  L  L  M  E  K  G  C  T  A  N  L  V  M  V  K  Q  L  K  L  S  W  D  T  N  M  K  E  N  S  P  V  L  M  S  G  F  C  W  L  V  E  T  T  A  L  A  L  D  S  I  K  D  *  E  V  K  I  G  L  S  L  Y  F  F  Y  W  L  W  R  S  V  G  Y  R  L  M  S  R  N  Q  Q  N  R  K  S  R  F  S  S  M  K  F  F  V  R  S  S  *  T  T  S  *  F  G  F  D  I  H  L  L  L  N  L  V  N  S  E  *  N  V  R  F  G  S  I  R  H  T  Y  M  A  *  E  *  Y  F </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02SLe0010E18.1" strand="+"/>
                <serials PGL_serial="2" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="34378" stop="34710"/>
                    <exon start="35060" stop="35104"/>
                    <exon start="35270" stop="35399"/>
                    <exon start="35524" stop="35605"/>
                    <exon start="35689" stop="35737"/>
                    <exon start="35978" stop="36075"/>
                    <exon start="36697" stop="36835"/>
                    <exon start="36962" stop="37105"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>1017</number_coding_nucleotides>
                  <number_encoded_amino_acids>339</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>ETMATVCTLILPKFPQSRGVSTTRAVLKRDPKMKVPYELKQEQSRLFHKLPSGLNMEVLYQRGSDQIRSTKNPPLVFVHGSFHAAWCWAEHWLPFFSQNGYDSYALSLLGQGESDSPAAAVAGTLETHAGDIADFIHKEIRLPPVLLGHSFGGLIVQYYIANIRREAVKGSDSEKKSLFPNLSGAVLVCSVPPSGNSGLVWRYLFSKPLAAFKVTRSLAAKAFQTSLPLCKETFFSAGMEDQLVARYQELMTESSRMPLFDLRKLNASLPVSRLEDPAFKVLVVGAKDDFIVDMEGLNETGRFYGIPTVCIEGVAHDIMIDCSWRKGAQLILSWLNSLN*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="2">
          <exon_coordinates>
            <exon e_start="34392" e_stop="34710"/>
            <exon e_start="35060" e_stop="35104"/>
            <exon e_start="35267" e_stop="35379"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.994" acc_prob="0.999" e_score="0.997"/>
          <exon-intron don_prob="1.000" acc_prob="0.955" e_score="1.000"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.997">
            <gDNA_exon_boundary e_start="34392" e_stop="34710" e_length="319"/>
          </exon>
          <intron i_serial="1" don_prob="0.994" acc_prob="0.999">
            <gDNA_intron_boundary i_start="34711" i_stop="35059" i_length="349"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="35060" e_stop="35104" e_length="45"/>
          </exon>
          <intron i_serial="2" don_prob="1.000" acc_prob="0.955">
            <gDNA_intron_boundary i_start="35105" i_stop="35266" i_length="162"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="35267" e_stop="35379" e_length="113"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="34392" stop="34710"/>
              <exon start="35060" stop="35104"/>
              <exon start="35267" stop="35379"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E724366" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="2" AGS_serial="2" gDNA_strand="+"/>
          <translation>
            <gDNA_template>GGTCTGTACGTTGATTCTTCCCAAATTTCCTCAATCGAGAGGAGTATCAACAACTCGTGCTGTGTTAAAGAGGGATCCCAAAATGAAGGTTCCTTATGAACTGAAGCAGGAACAATCTCGTCTTTTTCACAAGCTTCCCTCTGGTCTAAACATGGAGGTTCTCTACCAGAGGGGCAGTGACCAGATAAGATCTACTAAAAACCCACCTTTAGTTTTTGTTCATGGAAGCTTTCATGCTGCTTGGTGCTGGGCTGAACACTGGCTCCCCTTCTTCTCCCAAAATGGATATGATTCTTATGCTCTCAGCTTGTTGGGACAG : GGAGAAAGTGATTCACCTGCTGCTGCAGTTGCAGGTACCCTCGAG : TAGACACATGCTGGTGATATTGCTGACTTCATCCACAAAGAGATCAGGTTGCCACCAGTGTTGCTTGGACATTCATTTGGGGGGCTAATTGTTCAGTATTACATTGCAAATAT</gDNA_template>
            <first_frame> G  L  Y  V  D  S  S  Q  I  S  S  I  E  R  S  I  N  N  S  C  C  V  K  E  G  S  Q  N  E  G  S  L  *  T  E  A  G  T  I  S  S  F  S  Q  A  S  L  W  S  K  H  G  G  S  L  P  E  G  Q  *  P  D  K  I  Y  *  K  P  T  F  S  F  C  S  W  K  L  S  C  C  L  V  L  G  *  T  L  A  P  L  L  L  P  K  W  I  *  F  L  C  S  Q  L  V  G  T   : G  R  K  *  F  T  C  C  C  S  C  R  Y  P  R   : V  D  T  C  W  *  Y  C  *  L  H  P  Q  R  D  Q  V  A  T  S  V  A  W  T  F  I  W  G  A  N  C  S  V  L  H  C  K  Y </first_frame>
            <second_frame>  V  C  T  L  I  L  P  K  F  P  Q  S  R  G  V  S  T  T  R  A  V  L  K  R  D  P  K  M  K  V  P  Y  E  L  K  Q  E  Q  S  R  L  F  H  K  L  P  S  G  L  N  M  E  V  L  Y  Q  R  G  S  D  Q  I  R  S  T  K  N  P  P  L  V  F  V  H  G  S  F  H  A  A  W  C  W  A  E  H  W  L  P  F  F  S  Q  N  G  Y  D  S  Y  A  L  S  L  L  G  Q  :  G  E  S  D  S  P  A  A  A  V  A  G  T  L  E  :  *  T  H  A  G  D  I  A  D  F  I  H  K  E  I  R  L  P  P  V  L  L  G  H  S  F  G  G  L  I  V  Q  Y  Y  I  A  N   </second_frame>
            <third_frame>   S  V  R  *  F  F  P  N  F  L  N  R  E  E  Y  Q  Q  L  V  L  C  *  R  G  I  P  K  *  R  F  L  M  N  *  S  R  N  N  L  V  F  F  T  S  F  P  L  V  *  T  W  R  F  S  T  R  G  A  V  T  R  *  D  L  L  K  T  H  L  *  F  L  F  M  E  A  F  M  L  L  G  A  G  L  N  T  G  S  P  S  S  P  K  M  D  M  I  L  M  L  S  A  C  W  D  R :   E  K  V  I  H  L  L  L  Q  L  Q  V  P  S  S :   R  H  M  L  V  I  L  L  T  S  S  T  K  R  S  G  C  H  Q  C  C  L  D  I  H  L  G  G  *  L  F  S  I  T  L  Q  I  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02SLe0010E18.1" strand="+"/>
                <serials PGL_serial="2" AGS_serial="2" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="34393" stop="34710"/>
                    <exon start="35060" stop="35104"/>
                    <exon start="35267" stop="35269"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>363</number_coding_nucleotides>
                  <number_encoded_amino_acids>121</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>VCTLILPKFPQSRGVSTTRAVLKRDPKMKVPYELKQEQSRLFHKLPSGLNMEVLYQRGSDQIRSTKNPPLVFVHGSFHAAWCWAEHWLPFFSQNGYDSYALSLLGQGESDSPAAAVAGTLE*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="3" PGL_strand="-" PGL_start="42025" PGL_stop="41328"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="42025" e_stop="41490"/>
            <exon e_start="41366" e_stop="41328"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.944" acc_prob="0.930" e_score="1.000"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="42025" e_stop="41490" e_length="536"/>
          </exon>
          <intron i_serial="1" don_prob="0.944" acc_prob="0.930">
            <gDNA_intron_boundary i_start="41489" i_stop="41367" i_length="123"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="41366" e_stop="41328" e_length="39"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="42025" stop="41601"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E202218" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="42019" stop="41490"/>
              <exon start="41366" stop="41328"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E312039" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="42014" stop="41495"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E245001" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="41979" stop="41603"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E313557" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="3" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>GCCTCATCAGTTTTCTCTCTCTCTCCCATCGTCACTTGCTTTGTCCAAATCCCCAACTTCCCCTCCTCCTCACAACACTTTGCCCCTTCAAAAACTAACCCCCCAATGGAAACTATTCAATTCTCTTCAACTTCAACTTCTTTGTTTATTTCAACTTCTTTCTTTTTCTCTCGGGTCTCTCAACAACAATGGAGATGGAGGAAGGTTTTAAGGGGTTACTCAGGTTAATTGGTTCTGTTAAGAATTACGATTGGGGCCGTACGGCGAAGGAGTCTTGTGTTGGACGTCTGTATAGGCTCAATTCTCGGACGAAAATTGATGAAAAACAGCCATATGCCGAGTTTTGGATGGGAACTCATGACTCTGGACCATCCTACATTGTGGTGGAACGAGGAGGAAGAATTCAGAATGGACATGCTAATGGCGGAGGAATTAGAGACAAGTGTTCTTTGAAAGATTGGATTCAGAAGAACCCTAGTGTACTTGGAGAAACTGTTCTTGCCAAATGGGGTACCCAGCTTCCTTTTCTCTTCAAG : GTACTCTCAATTGAGAAAGCTTTGTCTATACAAGCTCAT</gDNA_template>
            <first_frame> A  S  S  V  F  S  L  S  P  I  V  T  C  F  V  Q  I  P  N  F  P  S  S  S  Q  H  F  A  P  S  K  T  N  P  P  M  E  T  I  Q  F  S  S  T  S  T  S  L  F  I  S  T  S  F  F  F  S  R  V  S  Q  Q  Q  W  R  W  R  K  V  L  R  G  Y  S  G  *  L  V  L  L  R  I  T  I  G  A  V  R  R  R  S  L  V  L  D  V  C  I  G  S  I  L  G  R  K  L  M  K  N  S  H  M  P  S  F  G  W  E  L  M  T  L  D  H  P  T  L  W  W  N  E  E  E  E  F  R  M  D  M  L  M  A  E  E  L  E  T  S  V  L  *  K  I  G  F  R  R  T  L  V  Y  L  E  K  L  F  L  P  N  G  V  P  S  F  L  F  S  S  R :   Y  S  Q  L  R  K  L  C  L  Y  K  L   </first_frame>
            <second_frame>  P  H  Q  F  S  L  S  L  P  S  S  L  A  L  S  K  S  P  T  S  P  P  P  H  N  T  L  P  L  Q  K  L  T  P  Q  W  K  L  F  N  S  L  Q  L  Q  L  L  C  L  F  Q  L  L  S  F  S  L  G  S  L  N  N  N  G  D  G  G  R  F  *  G  V  T  Q  V  N  W  F  C  *  E  L  R  L  G  P  Y  G  E  G  V  L  C  W  T  S  V  *  A  Q  F  S  D  E  N  *  *  K  T  A  I  C  R  V  L  D  G  N  S  *  L  W  T  I  L  H  C  G  G  T  R  R  K  N  S  E  W  T  C  *  W  R  R  N  *  R  Q  V  F  F  E  R  L  D  S  E  E  P  *  C  T  W  R  N  C  S  C  Q  M  G  Y  P  A  S  F  S  L  Q   : G  T  L  N  *  E  S  F  V  Y  T  S  S  </second_frame>
            <third_frame>   L  I  S  F  L  S  L  S  H  R  H  L  L  C  P  N  P  Q  L  P  L  L  L  T  T  L  C  P  F  K  N  *  P  P  N  G  N  Y  S  I  L  F  N  F  N  F  F  V  Y  F  N  F  F  L  F  L  S  G  L  S  T  T  M  E  M  E  E  G  F  K  G  L  L  R  L  I  G  S  V  K  N  Y  D  W  G  R  T  A  K  E  S  C  V  G  R  L  Y  R  L  N  S  R  T  K  I  D  E  K  Q  P  Y  A  E  F  W  M  G  T  H  D  S  G  P  S  Y  I  V  V  E  R  G  G  R  I  Q  N  G  H  A  N  G  G  G  I  R  D  K  C  S  L  K  D  W  I  Q  K  N  P  S  V  L  G  E  T  V  L  A  K  W  G  T  Q  L  P  F  L  F  K  :  V  L  S  I  E  K  A  L  S  I  Q  A  H </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02SLe0010E18.1" strand="-"/>
                <serials PGL_serial="3" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="41927" stop="41490"/>
                    <exon start="41366" stop="41328"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>477</number_coding_nucleotides>
                  <number_encoded_amino_acids>159</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>PPNGNYSILFNFNFFVYFNFFLFLSGLSTTMEMEEGFKGLLRLIGSVKNYDWGRTAKESCVGRLYRLNSRTKIDEKQPYAEFWMGTHDSGPSYIVVERGGRIQNGHANGGGIRDKCSLKDWIQKNPSVLGETVLAKWGTQLPFLFKVLSIEKALSIQAH</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="4" PGL_strand="+" PGL_start="49668" PGL_stop="53216"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="49668" e_stop="49861"/>
            <exon e_start="49953" e_stop="50045"/>
            <exon e_start="50138" e_stop="50304"/>
            <exon e_start="50413" e_stop="50459"/>
            <exon e_start="52391" e_stop="52460"/>
            <exon e_start="53017" e_stop="53216"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.962" acc_prob="0.996" e_score="1.000"/>
          <exon-intron don_prob="0.778" acc_prob="0.763" e_score="1.000"/>
          <exon-intron don_prob="0.726" acc_prob="0.998" e_score="0.994"/>
          <exon-intron don_prob="0.872" acc_prob="0.994" e_score="1.000"/>
          <exon-intron don_prob="0.753" acc_prob="0.714" e_score="1.000"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="49668" e_stop="49861" e_length="194"/>
          </exon>
          <intron i_serial="1" don_prob="0.962" acc_prob="0.996">
            <gDNA_intron_boundary i_start="49862" i_stop="49952" i_length="91"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="49953" e_stop="50045" e_length="93"/>
          </exon>
          <intron i_serial="2" don_prob="0.778" acc_prob="0.763">
            <gDNA_intron_boundary i_start="50046" i_stop="50137" i_length="92"/>
          </intron>
          <exon e_serial="3" e_score="0.994">
            <gDNA_exon_boundary e_start="50138" e_stop="50304" e_length="167"/>
          </exon>
          <intron i_serial="3" don_prob="0.726" acc_prob="0.998">
            <gDNA_intron_boundary i_start="50305" i_stop="50412" i_length="108"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="50413" e_stop="50459" e_length="47"/>
          </exon>
          <intron i_serial="4" don_prob="0.872" acc_prob="0.994">
            <gDNA_intron_boundary i_start="50460" i_stop="52390" i_length="1931"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="52391" e_stop="52460" e_length="70"/>
          </exon>
          <intron i_serial="5" don_prob="0.753" acc_prob="0.714">
            <gDNA_intron_boundary i_start="52461" i_stop="53016" i_length="556"/>
          </intron>
          <exon e_serial="6" e_score="1.000">
            <gDNA_exon_boundary e_start="53017" e_stop="53216" e_length="200"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="49668" stop="49861"/>
              <exon start="49953" stop="50045"/>
              <exon start="50138" stop="50194"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E298121" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="49683" stop="49861"/>
              <exon start="49953" stop="50045"/>
              <exon start="50138" stop="50304"/>
              <exon start="50413" stop="50459"/>
              <exon start="52391" stop="52409"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E273772" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="49684" stop="49861"/>
              <exon start="49953" stop="50045"/>
              <exon start="50138" stop="50304"/>
              <exon start="50413" stop="50459"/>
              <exon start="52391" stop="52460"/>
              <exon start="53017" stop="53216"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E725043" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="4" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>GGAATTCGCATTTCTCTGTGTTCAACAATGGCCGAAACAATTTGTAGAGCTCTACGTGATGGAGCATTCGAAGGAGAACACGCTCCTGCTCTAACTATAAAGGATACTATCGACGCGCCTCTCGGTTCCTTCGTCTTCAACCATATTCTTACGCAACTTACTTCTAACATTCTTGCCGGTAAATCACAAGCTCG : AGGTGTTGTGCTGGTCGCTTTATCACGGCCTCCATCGTTCTATGTTGAACTGTTGAAGAATAAAGGTTTCGACGTTTCTTCATCGAGTAAATG : GCTAAGAGTTTTAGATTGCTATTCTGATCCTCTTGGATGGAAAAACAAGTTATTGGAGAGGGGAACTGTAAGAAATCCCTACGAAGAGACCTTACTGAAAACTACCTTATGTAAGAACTTGAAAGAATTGGACAAGGTTTTGTCTTCCATTATTGAACTTGGAAAAG : AAATTGTTGAAGAGGGAAAAGGGAGATTTGCAGTTGCAATAGACTCG : GTTAGTGAGATCTTGAGACATTCATCTCTACCTTCCGTGGCAAGAATCTTAAGTCATCTTCGCAGTCATG : ACCAGGTCTCATGCATATTCTGCTTGTTGCATGTGGACCTTCATGAGGCCAAGGTGGCTGCCACTCTTGAATATTTGTCCACTATGCATGCGGATGTGGAACCAATAGTTCAAAGAACAAATGGACAGAGAAACACCTCAGAGGACCTCCCAATGGTGGAACAGTCCTTTAAGAGAGGAAAATTTCATGTACGCTTTAAA</gDNA_template>
            <first_frame> G  I  R  I  S  L  C  S  T  M  A  E  T  I  C  R  A  L  R  D  G  A  F  E  G  E  H  A  P  A  L  T  I  K  D  T  I  D  A  P  L  G  S  F  V  F  N  H  I  L  T  Q  L  T  S  N  I  L  A  G  K  S  Q  A  R :   G  V  V  L  V  A  L  S  R  P  P  S  F  Y  V  E  L  L  K  N  K  G  F  D  V  S  S  S  S  K  W :   L  R  V  L  D  C  Y  S  D  P  L  G  W  K  N  K  L  L  E  R  G  T  V  R  N  P  Y  E  E  T  L  L  K  T  T  L  C  K  N  L  K  E  L  D  K  V  L  S  S  I  I  E  L  G  K   : E  I  V  E  E  G  K  G  R  F  A  V  A  I  D  S  :  V  S  E  I  L  R  H  S  S  L  P  S  V  A  R  I  L  S  H  L  R  S  H   : D  Q  V  S  C  I  F  C  L  L  H  V  D  L  H  E  A  K  V  A  A  T  L  E  Y  L  S  T  M  H  A  D  V  E  P  I  V  Q  R  T  N  G  Q  R  N  T  S  E  D  L  P  M  V  E  Q  S  F  K  R  G  K  F  H  V  R  F  K </first_frame>
            <second_frame>  E  F  A  F  L  C  V  Q  Q  W  P  K  Q  F  V  E  L  Y  V  M  E  H  S  K  E  N  T  L  L  L  *  L  *  R  I  L  S  T  R  L  S  V  P  S  S  S  T  I  F  L  R  N  L  L  L  T  F  L  P  V  N  H  K  L   : E  V  L  C  W  S  L  Y  H  G  L  H  R  S  M  L  N  C  *  R  I  K  V  S  T  F  L  H  R  V  N   : G  *  E  F  *  I  A  I  L  I  L  L  D  G  K  T  S  Y  W  R  G  E  L  *  E  I  P  T  K  R  P  Y  *  K  L  P  Y  V  R  T  *  K  N  W  T  R  F  C  L  P  L  L  N  L  E  K  :  K  L  L  K  R  E  K  G  D  L  Q  L  Q  *  T  R :   L  V  R  S  *  D  I  H  L  Y  L  P  W  Q  E  S  *  V  I  F  A  V  M  :  T  R  S  H  A  Y  S  A  C  C  M  W  T  F  M  R  P  R  W  L  P  L  L  N  I  C  P  L  C  M  R  M  W  N  Q  *  F  K  E  Q  M  D  R  E  T  P  Q  R  T  S  Q  W  W  N  S  P  L  R  E  E  N  F  M  Y  A  L   </second_frame>
            <third_frame>   N  S  H  F  S  V  F  N  N  G  R  N  N  L  *  S  S  T  *  W  S  I  R  R  R  T  R  S  C  S  N  Y  K  G  Y  Y  R  R  A  S  R  F  L  R  L  Q  P  Y  S  Y  A  T  Y  F  *  H  S  C  R  *  I  T  S  S  :  R  C  C  A  G  R  F  I  T  A  S  I  V  L  C  *  T  V  E  E  *  R  F  R  R  F  F  I  E  *  M  :  A  K  S  F  R  L  L  F  *  S  S  W  M  E  K  Q  V  I  G  E  G  N  C  K  K  S  L  R  R  D  L  T  E  N  Y  L  M  *  E  L  E  R  I  G  Q  G  F  V  F  H  Y  *  T  W  K  R :   N  C  *  R  G  K  R  E  I  C  S  C  N  R  L   : G  *  *  D  L  E  T  F  I  S  T  F  R  G  K  N  L  K  S  S  S  Q  S  * :   P  G  L  M  H  I  L  L  V  A  C  G  P  S  *  G  Q  G  G  C  H  S  *  I  F  V  H  Y  A  C  G  C  G  T  N  S  S  K  N  K  W  T  E  K  H  L  R  G  P  P  N  G  G  T  V  L  *  E  R  K  I  S  C  T  L  *  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02SLe0010E18.1" strand="+"/>
                <serials PGL_serial="4" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="49668" stop="49861"/>
                    <exon start="49953" stop="50045"/>
                    <exon start="50138" stop="50304"/>
                    <exon start="50413" stop="50459"/>
                    <exon start="52391" stop="52460"/>
                    <exon start="53017" stop="53216"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>771</number_coding_nucleotides>
                  <number_encoded_amino_acids>257</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>GIRISLCSTMAETICRALRDGAFEGEHAPALTIKDTIDAPLGSFVFNHILTQLTSNILAGKSQARGVVLVALSRPPSFYVELLKNKGFDVSSSSKWLRVLDCYSDPLGWKNKLLERGTVRNPYEETLLKTTLCKNLKELDKVLSSIIELGKEIVEEGKGRFAVAIDSVSEILRHSSLPSVARILSHLRSHDQVSCIFCLLHVDLHEAKVAATLEYLSTMHADVEPIVQRTNGQRNTSEDLPMVEQSFKRGKFHVRFK</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="5" PGL_strand="-" PGL_start="58279" PGL_stop="57005"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="58279" e_stop="57851"/>
            <exon e_start="57674" e_stop="57590"/>
            <exon e_start="57057" e_stop="57005"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.789" acc_prob="0.284" e_score="0.916"/>
          <exon-intron don_prob="0.824" acc_prob="0.000" e_score="0.929"/>
          <exon-only e_score="0.981"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.916">
            <gDNA_exon_boundary e_start="58279" e_stop="57851" e_length="429"/>
          </exon>
          <intron i_serial="1" don_prob="0.789" acc_prob="0.284">
            <gDNA_intron_boundary i_start="57850" i_stop="57675" i_length="176"/>
          </intron>
          <exon e_serial="2" e_score="0.929">
            <gDNA_exon_boundary e_start="57674" e_stop="57590" e_length="85"/>
          </exon>
          <intron i_serial="2" don_prob="0.824" acc_prob="0.000">
            <gDNA_intron_boundary i_start="57589" i_stop="57058" i_length="532"/>
          </intron>
          <exon e_serial="3" e_score="0.981">
            <gDNA_exon_boundary e_start="57057" e_stop="57005" e_length="53"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="58279" stop="57851"/>
              <exon start="57674" stop="57590"/>
              <exon start="57057" stop="57005"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E361024" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="5" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>CAACGAGGAAGAGTCACCGGCCGGCCAGTTGGAGGAGCTCCATCAACAAACTCTAGCCGCCTCCTTCTGGCTTCCACTGTCTCTCTAATTGTTAAAGCAATTGCGTGCAATGCACAAAAGCTGACCAATTTCAACAAAAACCTTTTCGTAGAATCACGCCTGCGAATCGGAATCGGGAGACTGGAAATTCAATTTGATTGTGTTGGAAGAAAAAATGAAGGCGAATTGGGAGGTGAAGGATTGTTGTAACCACGACCAAGTCATCTTCCTTGTGACCATTGCTGTCTACACCGTCTTCATTTTTATCGTAACTTTCTCTCTCTAATTCTCTTTCATGTCTTTGTCTAATGCTTTACTATCCTGGAAAATGTCACCTCCATTAGAAGATCCAATATTTTTTTCCCTCTCAATTGTTCAAATTGGTGCGCG : CAAGAATCTCAATGGGCTGACATAATTAAGTTTCAAGAGGAAATGTTGTTCATTACGCAGCTCCAAATGTTACAATCGAAACTGA : TGGAGAACATTTATTATAACTCCTTTCAAGCTCATTACTGTGTTTCTTCATGA</gDNA_template>
            <first_frame> Q  R  G  R  V  T  G  R  P  V  G  G  A  P  S  T  N  S  S  R  L  L  L  A  S  T  V  S  L  I  V  K  A  I  A  C  N  A  Q  K  L  T  N  F  N  K  N  L  F  V  E  S  R  L  R  I  G  I  G  R  L  E  I  Q  F  D  C  V  G  R  K  N  E  G  E  L  G  G  E  G  L  L  *  P  R  P  S  H  L  P  C  D  H  C  C  L  H  R  L  H  F  Y  R  N  F  L  S  L  I  L  F  H  V  F  V  *  C  F  T  I  L  E  N  V  T  S  I  R  R  S  N  I  F  F  P  L  N  C  S  N  W  C  A  :  Q  E  S  Q  W  A  D  I  I  K  F  Q  E  E  M  L  F  I  T  Q  L  Q  M  L  Q  S  K  L   : M  E  N  I  Y  Y  N  S  F  Q  A  H  Y  C  V  S  S  * </first_frame>
            <second_frame>  N  E  E  E  S  P  A  G  Q  L  E  E  L  H  Q  Q  T  L  A  A  S  F  W  L  P  L  S  L  *  L  L  K  Q  L  R  A  M  H  K  S  *  P  I  S  T  K  T  F  S  *  N  H  A  C  E  S  E  S  G  D  W  K  F  N  L  I  V  L  E  E  K  M  K  A  N  W  E  V  K  D  C  C  N  H  D  Q  V  I  F  L  V  T  I  A  V  Y  T  V  F  I  F  I  V  T  F  S  L  *  F  S  F  M  S  L  S  N  A  L  L  S  W  K  M  S  P  P  L  E  D  P  I  F  F  S  L  S  I  V  Q  I  G  A  R :   K  N  L  N  G  L  T  *  L  S  F  K  R  K  C  C  S  L  R  S  S  K  C  Y  N  R  N  *  :  W  R  T  F  I  I  T  P  F  K  L  I  T  V  F  L  H   </second_frame>
            <third_frame>   T  R  K  S  H  R  P  A  S  W  R  S  S  I  N  K  L  *  P  P  P  S  G  F  H  C  L  S  N  C  *  S  N  C  V  Q  C  T  K  A  D  Q  F  Q  Q  K  P  F  R  R  I  T  P  A  N  R  N  R  E  T  G  N  S  I  *  L  C  W  K  K  K  *  R  R  I  G  R  *  R  I  V  V  T  T  T  K  S  S  S  L  *  P  L  L  S  T  P  S  S  F  L  S  *  L  S  L  S  N  S  L  S  C  L  C  L  M  L  Y  Y  P  G  K  C  H  L  H  *  K  I  Q  Y  F  F  P  S  Q  L  F  K  L  V  R   : A  R  I  S  M  G  *  H  N  *  V  S  R  G  N  V  V  H  Y  A  A  P  N  V  T  I  E  T  D :   G  E  H  L  L  *  L  L  S  S  S  L  L  C  F  F  M  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02SLe0010E18.1" strand="-"/>
                <serials PGL_serial="5" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="58279" stop="58031"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>246</number_coding_nucleotides>
                  <number_encoded_amino_acids>82</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>QRGRVTGRPVGGAPSTNSSRLLLASTVSLIVKAIACNAQKLTNFNKNLFVESRLRIGIGRLEIQFDCVGRKNEGELGGEGLL*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C02SLe0010E18.1" strand="-"/>
                <serials PGL_serial="5" AGS_serial="1" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="57931" stop="57851"/>
                    <exon start="57674" stop="57590"/>
                    <exon start="57057" stop="57005"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>216</number_coding_nucleotides>
                  <number_encoded_amino_acids>72</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>CFTILENVTSIRRSNIFFPLNCSNWCAQESQWADIIKFQEEMLFITQLQMLQSKLMENIYYNSFQAHYCVSS*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="6" PGL_strand="+" PGL_start="67660" PGL_stop="68589"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="67660" e_stop="68308"/>
            <exon e_start="68403" e_stop="68464"/>
            <exon e_start="68582" e_stop="68589"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.998" acc_prob="1.000" e_score="1.000"/>
          <exon-intron don_prob="0.986" acc_prob="0.999" e_score="0.984"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="67660" e_stop="68308" e_length="649"/>
          </exon>
          <intron i_serial="1" don_prob="0.998" acc_prob="1.000">
            <gDNA_intron_boundary i_start="68309" i_stop="68402" i_length="94"/>
          </intron>
          <exon e_serial="2" e_score="0.984">
            <gDNA_exon_boundary e_start="68403" e_stop="68464" e_length="62"/>
          </exon>
          <intron i_serial="2" don_prob="0.986" acc_prob="0.999">
            <gDNA_intron_boundary i_start="68465" i_stop="68581" i_length="117"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="68582" e_stop="68589" e_length="8"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="67660" stop="68308"/>
              <exon start="68403" stop="68464"/>
              <exon start="68582" stop="68589"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E315219" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="67660" stop="68025"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E315211" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="6" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>TACTTTTTTCACTGTCCCAAAAAAAAAAAAAGGATCTTGAAAATTCAAGATTCAGTCAATCCCCTTTTCTTTCTTTCCTTTTACATCTTCCTATAGTCAGTTCTAGCTGTTTTCTTGAACAGTAGCACATTGCGTGAAAGTTAAAGGTATTGCTGTTTCTATTTTCTTTGTTTGAGAGTGATTTTTCTTGTGAAAAGTATGTCATAACTGAACAGAGCTCAGGGTATTACTGTTCATTGCTATTTTCTTGTTTCTGATATTTTTGCATGAAAATGTGAGGGGTTTTTTTTCCTTTCTTTTTGGGGCCAAGGAGGTGTGAGTGATGTGGTGGATAAAGGGGTCATTGGTTTTTTTTTCCCAATTAATGTGTAGATAATGTTTGATAGAAGCCAAAGTATGTGAATCACATTCAGAAGAGTGTGAGAAAAAGGTGAAGAAATTCAAGAAATAATTTATTGTTTTTGAAAGAGGATTGTTAGCTCAAGTAGAGAAATGAATGATAGTTTAGCCATAACAGCATCATCATTGGCCATTACTGAGAAAAAGCCTCAAAGGCCTGGGGGTTGTGTGGGTATTTTCTTTCAACTCTTTGATTGGAACCGTAGATTTGCCAAGAAGAAGTTGTTTCCAAAGAAACTGCTTTCACCAG : CTCGCTTGAAACAAGCTTCAAAGAAGTTTGGAGGGGATGAAAAGCAGCCAAAGCATCGTTTG : ATTGCTAA</gDNA_template>
            <first_frame> Y  F  F  H  C  P  K  K  K  K  R  I  L  K  I  Q  D  S  V  N  P  L  F  F  L  S  F  Y  I  F  L  *  S  V  L  A  V  F  L  N  S  S  T  L  R  E  S  *  R  Y  C  C  F  Y  F  L  C  L  R  V  I  F  L  V  K  S  M  S  *  L  N  R  A  Q  G  I  T  V  H  C  Y  F  L  V  S  D  I  F  A  *  K  C  E  G  F  F  F  L  S  F  W  G  Q  G  G  V  S  D  V  V  D  K  G  V  I  G  F  F  F  P  I  N  V  *  I  M  F  D  R  S  Q  S  M  *  I  T  F  R  R  V  *  E  K  G  E  E  I  Q  E  I  I  Y  C  F  *  K  R  I  V  S  S  S  R  E  M  N  D  S  L  A  I  T  A  S  S  L  A  I  T  E  K  K  P  Q  R  P  G  G  C  V  G  I  F  F  Q  L  F  D  W  N  R  R  F  A  K  K  K  L  F  P  K  K  L  L  S  P   : A  R  L  K  Q  A  S  K  K  F  G  G  D  E  K  Q  P  K  H  R  L  :  I  A   </first_frame>
            <second_frame>  T  F  F  T  V  P  K  K  K  K  G  S  *  K  F  K  I  Q  S  I  P  F  S  F  F  P  F  T  S  S  Y  S  Q  F  *  L  F  S  *  T  V  A  H  C  V  K  V  K  G  I  A  V  S  I  F  F  V  *  E  *  F  F  L  *  K  V  C  H  N  *  T  E  L  R  V  L  L  F  I  A  I  F  L  F  L  I  F  L  H  E  N  V  R  G  F  F  S  F  L  F  G  A  K  E  V  *  V  M  W  W  I  K  G  S  L  V  F  F  S  Q  L  M  C  R  *  C  L  I  E  A  K  V  C  E  S  H  S  E  E  C  E  K  K  V  K  K  F  K  K  *  F  I  V  F  E  R  G  L  L  A  Q  V  E  K  *  M  I  V  *  P  *  Q  H  H  H  W  P  L  L  R  K  S  L  K  G  L  G  V  V  W  V  F  S  F  N  S  L  I  G  T  V  D  L  P  R  R  S  C  F  Q  R  N  C  F  H  Q  :  L  A  *  N  K  L  Q  R  S  L  E  G  M  K  S  S  Q  S  I  V  * :   L  L  </second_frame>
            <third_frame>   L  F  S  L  S  Q  K  K  K  K  D  L  E  N  S  R  F  S  Q  S  P  F  L  S  F  L  L  H  L  P  I  V  S  S  S  C  F  L  E  Q  *  H  I  A  *  K  L  K  V  L  L  F  L  F  S  L  F  E  S  D  F  S  C  E  K  Y  V  I  T  E  Q  S  S  G  Y  Y  C  S  L  L  F  S  C  F  *  Y  F  C  M  K  M  *  G  V  F  F  P  F  F  L  G  P  R  R  C  E  *  C  G  G  *  R  G  H  W  F  F  F  P  N  *  C  V  D  N  V  *  *  K  P  K  Y  V  N  H  I  Q  K  S  V  R  K  R  *  R  N  S  R  N  N  L  L  F  L  K  E  D  C  *  L  K  *  R  N  E  *  *  F  S  H  N  S  I  I  I  G  H  Y  *  E  K  A  S  K  A  W  G  L  C  G  Y  F  L  S  T  L  *  L  E  P  *  I  C  Q  E  E  V  V  S  K  E  T  A  F  T  S :   S  L  E  T  S  F  K  E  V  W  R  G  *  K  A  A  K  A  S  F   : D  C  * </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02SLe0010E18.1" strand="+"/>
                <serials PGL_serial="6" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="68125" stop="68308"/>
                    <exon start="68403" stop="68464"/>
                    <exon start="68582" stop="68587"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>252</number_coding_nucleotides>
                  <number_encoded_amino_acids>84</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>KRIVSSSREMNDSLAITASSLAITEKKPQRPGGCVGIFFQLFDWNRRFAKKKLFPKKLLSPARLKQASKKFGGDEKQPKHRLIA</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="7" PGL_strand="+" PGL_start="69091" PGL_stop="69551"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="69091" e_stop="69551"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.959"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.959">
            <gDNA_exon_boundary e_start="69091" e_stop="69551" e_length="461"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="69091" stop="69551"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E725439" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="7" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>TTATCCTAAATATTTTTCTCCTTTGGAAGATAAAGCAGATTTAGCACTGCATCATTTGGAAGTCCCTAATCCTTGTGTGGATTCAAAGACTTCGGAAGTGAGAGCATCTGTGCCTTCATGTAAAAATTGTGGTTATATGCTTCATAGTAAGAATGGTACACCAAATGGGGAAGAACACCCATCGTCTGTCTCGTCACCTGTCTCTAGTTACTCTCAACCTTCTTGTCAAGGTCCAGGAAGAAATATGCTAAGGTTGCCCATTATCAACAGCAGAGATCAATTAGAGAGAGTTTTTGAGGGTTCGTCTTCAGACGCCAATGCTGAAATAGATGATGTATCATACTGTGCAGAGCTCATATTGGGCAAGCGACCTATTAGCAGAAGTCGAATAGCGATGCATGGCGCCTGCCAAGGGAGCAATGTGAAAAAGGATGCATCATCTGTCACTCATGTGCTTAACC</gDNA_template>
            <first_frame> L  S  *  I  F  F  S  F  G  R  *  S  R  F  S  T  A  S  F  G  S  P  *  S  L  C  G  F  K  D  F  G  S  E  S  I  C  A  F  M  *  K  L  W  L  Y  A  S  *  *  E  W  Y  T  K  W  G  R  T  P  I  V  C  L  V  T  C  L  *  L  L  S  T  F  L  S  R  S  R  K  K  Y  A  K  V  A  H  Y  Q  Q  Q  R  S  I  R  E  S  F  *  G  F  V  F  R  R  Q  C  *  N  R  *  C  I  I  L  C  R  A  H  I  G  Q  A  T  Y  *  Q  K  S  N  S  D  A  W  R  L  P  R  E  Q  C  E  K  G  C  I  I  C  H  S  C  A  *   </first_frame>
            <second_frame>  Y  P  K  Y  F  S  P  L  E  D  K  A  D  L  A  L  H  H  L  E  V  P  N  P  C  V  D  S  K  T  S  E  V  R  A  S  V  P  S  C  K  N  C  G  Y  M  L  H  S  K  N  G  T  P  N  G  E  E  H  P  S  S  V  S  S  P  V  S  S  Y  S  Q  P  S  C  Q  G  P  G  R  N  M  L  R  L  P  I  I  N  S  R  D  Q  L  E  R  V  F  E  G  S  S  S  D  A  N  A  E  I  D  D  V  S  Y  C  A  E  L  I  L  G  K  R  P  I  S  R  S  R  I  A  M  H  G  A  C  Q  G  S  N  V  K  K  D  A  S  S  V  T  H  V  L  N  </second_frame>
            <third_frame>   I  L  N  I  F  L  L  W  K  I  K  Q  I  *  H  C  I  I  W  K  S  L  I  L  V  W  I  Q  R  L  R  K  *  E  H  L  C  L  H  V  K  I  V  V  I  C  F  I  V  R  M  V  H  Q  M  G  K  N  T  H  R  L  S  R  H  L  S  L  V  T  L  N  L  L  V  K  V  Q  E  E  I  C  *  G  C  P  L  S  T  A  E  I  N  *  R  E  F  L  R  V  R  L  Q  T  P  M  L  K  *  M  M  Y  H  T  V  Q  S  S  Y  W  A  S  D  L  L  A  E  V  E  *  R  C  M  A  P  A  K  G  A  M  *  K  R  M  H  H  L  S  L  M  C  L  T </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02SLe0010E18.1" strand="+"/>
                <serials PGL_serial="7" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="69092" stop="69550"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>459</number_coding_nucleotides>
                  <number_encoded_amino_acids>153</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>YPKYFSPLEDKADLALHHLEVPNPCVDSKTSEVRASVPSCKNCGYMLHSKNGTPNGEEHPSSVSSPVSSYSQPSCQGPGRNMLRLPIINSRDQLERVFEGSSSDANAEIDDVSYCAELILGKRPISRSRIAMHGACQGSNVKKDASSVTHVLN</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="8" PGL_strand="-" PGL_start="69822" PGL_stop="69404"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="69822" e_stop="69404"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.983"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.983">
            <gDNA_exon_boundary e_start="69822" e_stop="69404" e_length="419"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="69822" stop="69404"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E279266" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="8" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>CTGGAGACATTCATCAATCTCTTCTTCCGCACCGGAGAGAGGGAATCACTTCTCCTTGAATAAGGTTTTCTTTCAGTTTCAAACTTGCAGCCATCGGCTGTGGCTGGCATTCTCAATCGGGTAGATGCACCTAACCTTCTATTCTGTGCAACAAAACTTTTGGTATTAATCGTAGATTCTGCAGCTGCTAAAACTCTGTTGCTCTGCAAACTACTTTGCTTAGACTTCATAAATCCCCTCTCTCTATTCTGAGATGTTTGATTTTGCTTCTGGTTAAGCACATGAGTGACAGATGATGCATCCTTTTTCACATTGCTCCCTTGGCAGGCGCCATGCATCGCTATTCGACTTCTGCTAATAGGTCGCTTGCCCAATATGAGCTCTGCACAGTATGATACATCATCTATTTCAGCATTGGC</gDNA_template>
            <first_frame> L  E  T  F  I  N  L  F  F  R  T  G  E  R  E  S  L  L  L  E  *  G  F  L  S  V  S  N  L  Q  P  S  A  V  A  G  I  L  N  R  V  D  A  P  N  L  L  F  C  A  T  K  L  L  V  L  I  V  D  S  A  A  A  K  T  L  L  L  C  K  L  L  C  L  D  F  I  N  P  L  S  L  F  *  D  V  *  F  C  F  W  L  S  T  *  V  T  D  D  A  S  F  F  T  L  L  P  W  Q  A  P  C  I  A  I  R  L  L  L  I  G  R  L  P  N  M  S  S  A  Q  Y  D  T  S  S  I  S  A  L   </first_frame>
            <second_frame>  W  R  H  S  S  I  S  S  S  A  P  E  R  G  N  H  F  S  L  N  K  V  F  F  Q  F  Q  T  C  S  H  R  L  W  L  A  F  S  I  G  *  M  H  L  T  F  Y  S  V  Q  Q  N  F  W  Y  *  S  *  I  L  Q  L  L  K  L  C  C  S  A  N  Y  F  A  *  T  S  *  I  P  S  L  Y  S  E  M  F  D  F  A  S  G  *  A  H  E  *  Q  M  M  H  P  F  S  H  C  S  L  G  R  R  H  A  S  L  F  D  F  C  *  *  V  A  C  P  I  *  A  L  H  S  M  I  H  H  L  F  Q  H  W  </second_frame>
            <third_frame>   G  D  I  H  Q  S  L  L  P  H  R  R  E  G  I  T  S  P  *  I  R  F  S  F  S  F  K  L  A  A  I  G  C  G  W  H  S  Q  S  G  R  C  T  *  P  S  I  L  C  N  K  T  F  G  I  N  R  R  F  C  S  C  *  N  S  V  A  L  Q  T  T  L  L  R  L  H  K  S  P  L  S  I  L  R  C  L  I  L  L  L  V  K  H  M  S  D  R  *  C  I  L  F  H  I  A  P  L  A  G  A  M  H  R  Y  S  T  S  A  N  R  S  L  A  Q  Y  E  L  C  T  V  *  Y  I  I  Y  F  S  I  G </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <none gDNA_id="C02SLe0010E18.1"/>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="9" PGL_strand="+" PGL_start="70155" PGL_stop="72348"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="70155" e_stop="70411"/>
            <exon e_start="71631" e_stop="71760"/>
            <exon e_start="71891" e_stop="72348"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.993" acc_prob="0.995" e_score="1.000"/>
          <exon-intron don_prob="0.997" acc_prob="0.299" e_score="1.000"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="70155" e_stop="70411" e_length="257"/>
          </exon>
          <intron i_serial="1" don_prob="0.993" acc_prob="0.995">
            <gDNA_intron_boundary i_start="70412" i_stop="71630" i_length="1219"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="71631" e_stop="71760" e_length="130"/>
          </exon>
          <intron i_serial="2" don_prob="0.997" acc_prob="0.299">
            <gDNA_intron_boundary i_start="71761" i_stop="71890" i_length="130"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="71891" e_stop="72348" e_length="458"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="70155" stop="70411"/>
              <exon start="71631" stop="71760"/>
              <exon start="71891" stop="72348"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E738958" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="70349" stop="70411"/>
              <exon start="71631" stop="71760"/>
              <exon start="71891" stop="72157"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E330912" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="9" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>AATCCTTTCCTTTGAAAGGAGACATTTTAGGAGCACTTTTGGAGCAAAAGCTAAAGGAATTGACTAGTGAAGAAGAGTTCGCAGAAGGAGATGCTGCACCTAGAAAAAGCACTGCAACGATCCTTCAGGAGCTAATAACTGCTTTGAATGATGAGACCCAATTTCATCTGGATAGTTTGCCTTCTAAACCTAACAGAAAAGAAGATTTGTATGATGATCGTGAAGTGTCTTCAAGAAATACTTCCATGAATTTCCAG : GCCATACCAGATTCAGCAACCGATTTAGTTGGGAATTCACTTGATAATGATCACCTTAGTCCAGGATGTGTTCTTGAAGCTACCTTTTCAACTGACAGCTACCTCTCCAGCAGTCCCAATAGTAGCTCAA : AGGACAAAGTGCTTGCCGAATCTGTGGACTCTATTTATGACGAACCACTCTTTCCAGAACCTGATAGAGATCTTTCGGATTGTGCGACCTCATTATTCACCAGGAGGAGTTGCAGAGCACTGATCACAGACCATGTTAACAACATTTCTGGAGTGCTAAGCAAGATTAATCAGTTAAAAGGAAGCAAACTCGGTTATGCAAATGAGGTCATTTTGAATACTGAACTCATACTTGGAACCTCACCTGAACAACAGGCTTTACCTGTAGACGATGGGTTATCAGTGAGCCATTTTCTCCTCAATGAACTTGAAATGCTATCAAGTCTTCTATGGATGACTTTTGGTCAGTTGCTTGGCTGTAACGACCCCAAACAGATGAATCAGCTTAAAGGATTTGCCTTTGATTGTCTATTAGAGTATCTAGACTCAAAATTTGGTCGATACTCTGATTCTGGTTTC</gDNA_template>
            <first_frame> N  P  F  L  *  K  E  T  F  *  E  H  F  W  S  K  S  *  R  N  *  L  V  K  K  S  S  Q  K  E  M  L  H  L  E  K  A  L  Q  R  S  F  R  S  *  *  L  L  *  M  M  R  P  N  F  I  W  I  V  C  L  L  N  L  T  E  K  K  I  C  M  M  I  V  K  C  L  Q  E  I  L  P  *  I  S  R :   P  Y  Q  I  Q  Q  P  I  *  L  G  I  H  L  I  M  I  T  L  V  Q  D  V  F  L  K  L  P  F  Q  L  T  A  T  S  P  A  V  P  I  V  A  Q  :  R  T  K  C  L  P  N  L  W  T  L  F  M  T  N  H  S  F  Q  N  L  I  E  I  F  R  I  V  R  P  H  Y  S  P  G  G  V  A  E  H  *  S  Q  T  M  L  T  T  F  L  E  C  *  A  R  L  I  S  *  K  E  A  N  S  V  M  Q  M  R  S  F  *  I  L  N  S  Y  L  E  P  H  L  N  N  R  L  Y  L  *  T  M  G  Y  Q  *  A  I  F  S  S  M  N  L  K  C  Y  Q  V  F  Y  G  *  L  L  V  S  C  L  A  V  T  T  P  N  R  *  I  S  L  K  D  L  P  L  I  V  Y  *  S  I  *  T  Q  N  L  V  D  T  L  I  L  V   </first_frame>
            <second_frame>  I  L  S  F  E  R  R  H  F  R  S  T  F  G  A  K  A  K  G  I  D  *  *  R  R  V  R  R  R  R  C  C  T  *  K  K  H  C  N  D  P  S  G  A  N  N  C  F  E  *  *  D  P  I  S  S  G  *  F  A  F  *  T  *  Q  K  R  R  F  V  *  *  S  *  S  V  F  K  K  Y  F  H  E  F  P   : G  H  T  R  F  S  N  R  F  S  W  E  F  T  *  *  *  S  P  *  S  R  M  C  S  *  S  Y  L  F  N  *  Q  L  P  L  Q  Q  S  Q  *  *  L  K :   G  Q  S  A  C  R  I  C  G  L  Y  L  *  R  T  T  L  S  R  T  *  *  R  S  F  G  L  C  D  L  I  I  H  Q  E  E  L  Q  S  T  D  H  R  P  C  *  Q  H  F  W  S  A  K  Q  D  *  S  V  K  R  K  Q  T  R  L  C  K  *  G  H  F  E  Y  *  T  H  T  W  N  L  T  *  T  T  G  F  T  C  R  R  W  V  I  S  E  P  F  S  P  Q  *  T  *  N  A  I  K  S  S  M  D  D  F  W  S  V  A  W  L  *  R  P  Q  T  D  E  S  A  *  R  I  C  L  *  L  S  I  R  V  S  R  L  K  I  W  S  I  L  *  F  W  F  </second_frame>
            <third_frame>   S  F  P  L  K  G  D  I  L  G  A  L  L  E  Q  K  L  K  E  L  T  S  E  E  E  F  A  E  G  D  A  A  P  R  K  S  T  A  T  I  L  Q  E  L  I  T  A  L  N  D  E  T  Q  F  H  L  D  S  L  P  S  K  P  N  R  K  E  D  L  Y  D  D  R  E  V  S  S  R  N  T  S  M  N  F  Q  :  A  I  P  D  S  A  T  D  L  V  G  N  S  L  D  N  D  H  L  S  P  G  C  V  L  E  A  T  F  S  T  D  S  Y  L  S  S  S  P  N  S  S  S   : K  D  K  V  L  A  E  S  V  D  S  I  Y  D  E  P  L  F  P  E  P  D  R  D  L  S  D  C  A  T  S  L  F  T  R  R  S  C  R  A  L  I  T  D  H  V  N  N  I  S  G  V  L  S  K  I  N  Q  L  K  G  S  K  L  G  Y  A  N  E  V  I  L  N  T  E  L  I  L  G  T  S  P  E  Q  Q  A  L  P  V  D  D  G  L  S  V  S  H  F  L  L  N  E  L  E  M  L  S  S  L  L  W  M  T  F  G  Q  L  L  G  C  N  D  P  K  Q  M  N  Q  L  K  G  F  A  F  D  C  L  L  E  Y  L  D  S  K  F  G  R  Y  S  D  S  G  F </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02SLe0010E18.1" strand="+"/>
                <serials PGL_serial="9" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="70157" stop="70411"/>
                    <exon start="71631" stop="71760"/>
                    <exon start="71891" stop="72348"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>843</number_coding_nucleotides>
                  <number_encoded_amino_acids>281</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>SFPLKGDILGALLEQKLKELTSEEEFAEGDAAPRKSTATILQELITALNDETQFHLDSLPSKPNRKEDLYDDREVSSRNTSMNFQAIPDSATDLVGNSLDNDHLSPGCVLEATFSTDSYLSSSPNSSSKDKVLAESVDSIYDEPLFPEPDRDLSDCATSLFTRRSCRALITDHVNNISGVLSKINQLKGSKLGYANEVILNTELILGTSPEQQALPVDDGLSVSHFLLNELEMLSSLLWMTFGQLLGCNDPKQMNQLKGFAFDCLLEYLDSKFGRYSDSGF</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="10" PGL_strand="-" PGL_start="78124" PGL_stop="75010"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="77768" e_stop="77715"/>
            <exon e_start="77607" e_stop="77523"/>
            <exon e_start="77435" e_stop="76982"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.993" acc_prob="0.998" e_score="1.000"/>
          <exon-intron don_prob="0.878" acc_prob="0.969" e_score="1.000"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="77768" e_stop="77715" e_length="54"/>
          </exon>
          <intron i_serial="1" don_prob="0.993" acc_prob="0.998">
            <gDNA_intron_boundary i_start="77714" i_stop="77608" i_length="107"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="77607" e_stop="77523" e_length="85"/>
          </exon>
          <intron i_serial="2" don_prob="0.878" acc_prob="0.969">
            <gDNA_intron_boundary i_start="77522" i_stop="77436" i_length="87"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="77435" e_stop="76982" e_length="454"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="77768" stop="77715"/>
              <exon start="77607" stop="77523"/>
              <exon start="77435" stop="77045"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E275272" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="77268" stop="76982"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E323844" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="10" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>TTAATTGTTGGATTGGGAAATCCTGGAAACAAGTATCACGGAACTCGACACAAT : GTTGGTTTCGAGATGATTGATAGAGTTTCTCAAGAGGAGGGTATCGTGTTAAACACAATACAGTCGAAGGCCTTGATAGGGATAG : GTTCCATTGGGGAGGTACCTGTTGTATTGGCAAAGCCTCAGGCCTACATGAATTTCAGTGGAGAAGCAGTATGTATTCAGCAGCTATTGATGTTTAGTATTTTAGTGTTATAACCCATTAATTAGTTATTCAAAGTGTAGTATTGAGTACCTAATGACCATAAGGACAACATTAAACGCTTTTCTATCATTGGTTTACACATGTTTCTTCCATTTCGATTTACATGGATAGTTGCTATGATCAGCTGTTGTGTTTACTTCACAATGAAAGAGGCTACTTTTGGTTTAGACTGTCCCTTGTGATAACCTGCGTAACAACCTTGTCACCTTTGATTTTGGATCAAAGCTTTTATCCTGCCTCGCATATAAATGTTCTTTCAGCATAGTGGAACTCCACTCAGTGGACTTGTTATCTCTTATTAAATCAGCTTCTACTTGCAATGAACACACACATT</gDNA_template>
            <first_frame> L  I  V  G  L  G  N  P  G  N  K  Y  H  G  T  R  H  N  :  V  G  F  E  M  I  D  R  V  S  Q  E  E  G  I  V  L  N  T  I  Q  S  K  A  L  I  G  I   : G  S  I  G  E  V  P  V  V  L  A  K  P  Q  A  Y  M  N  F  S  G  E  A  V  C  I  Q  Q  L  L  M  F  S  I  L  V  L  *  P  I  N  *  L  F  K  V  *  Y  *  V  P  N  D  H  K  D  N  I  K  R  F  S  I  I  G  L  H  M  F  L  P  F  R  F  T  W  I  V  A  M  I  S  C  C  V  Y  F  T  M  K  E  A  T  F  G  L  D  C  P  L  *  *  P  A  *  Q  P  C  H  L  *  F  W  I  K  A  F  I  L  P  R  I  *  M  F  F  Q  H  S  G  T  P  L  S  G  L  V  I  S  Y  *  I  S  F  Y  L  Q  *  T  H  T   </first_frame>
            <second_frame>  *  L  L  D  W  E  I  L  E  T  S  I  T  E  L  D  T  M :   L  V  S  R  *  L  I  E  F  L  K  R  R  V  S  C  *  T  Q  Y  S  R  R  P  *  *  G  *  :  V  P  L  G  R  Y  L  L  Y  W  Q  S  L  R  P  T  *  I  S  V  E  K  Q  Y  V  F  S  S  Y  *  C  L  V  F  *  C  Y  N  P  L  I  S  Y  S  K  C  S  I  E  Y  L  M  T  I  R  T  T  L  N  A  F  L  S  L  V  Y  T  C  F  F  H  F  D  L  H  G  *  L  L  *  S  A  V  V  F  T  S  Q  *  K  R  L  L  L  V  *  T  V  P  C  D  N  L  R  N  N  L  V  T  F  D  F  G  S  K  L  L  S  C  L  A  Y  K  C  S  F  S  I  V  E  L  H  S  V  D  L  L  S  L  I  K  S  A  S  T  C  N  E  H  T  H  </second_frame>
            <third_frame>   N  C  W  I  G  K  S  W  K  Q  V  S  R  N  S  T  Q   : C  W  F  R  D  D  *  *  S  F  S  R  G  G  Y  R  V  K  H  N  T  V  E  G  L  D  R  D  R :   F  H  W  G  G  T  C  C  I  G  K  A  S  G  L  H  E  F  Q  W  R  S  S  M  Y  S  A  A  I  D  V  *  Y  F  S  V  I  T  H  *  L  V  I  Q  S  V  V  L  S  T  *  *  P  *  G  Q  H  *  T  L  F  Y  H  W  F  T  H  V  S  S  I  S  I  Y  M  D  S  C  Y  D  Q  L  L  C  L  L  H  N  E  R  G  Y  F  W  F  R  L  S  L  V  I  T  C  V  T  T  L  S  P  L  I  L  D  Q  S  F  Y  P  A  S  H  I  N  V  L  S  A  *  W  N  S  T  Q  W  T  C  Y  L  L  L  N  Q  L  L  L  A  M  N  T  H  I </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02SLe0010E18.1" strand="-"/>
                <serials PGL_serial="10" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="77768" stop="77715"/>
                    <exon start="77607" stop="77523"/>
                    <exon start="77435" stop="77323"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>249</number_coding_nucleotides>
                  <number_encoded_amino_acids>83</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>LIVGLGNPGNKYHGTRHNVGFEMIDRVSQEEGIVLNTIQSKALIGIGSIGEVPVVLAKPQAYMNFSGEAVCIQQLLMFSILVL*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C02SLe0010E18.1" strand="-"/>
                <serials PGL_serial="10" AGS_serial="1" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="77260" stop="77051"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>207</number_coding_nucleotides>
                  <number_encoded_amino_acids>69</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>TLFYHWFTHVSSISIYMDSCYDQLLCLLHNERGYFWFRLSLVITCVTTLSPLILDQSFYPASHINVLSA*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="2">
          <exon_coordinates>
            <exon e_start="76101" e_stop="75664"/>
            <exon e_start="75500" e_stop="75427"/>
            <exon e_start="75265" e_stop="75207"/>
            <exon e_start="75072" e_stop="75010"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.997" acc_prob="0.993" e_score="1.000"/>
          <exon-intron don_prob="0.907" acc_prob="0.999" e_score="1.000"/>
          <exon-intron don_prob="0.883" acc_prob="0.987" e_score="1.000"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="76101" e_stop="75664" e_length="438"/>
          </exon>
          <intron i_serial="1" don_prob="0.997" acc_prob="0.993">
            <gDNA_intron_boundary i_start="75663" i_stop="75501" i_length="163"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="75500" e_stop="75427" e_length="74"/>
          </exon>
          <intron i_serial="2" don_prob="0.907" acc_prob="0.999">
            <gDNA_intron_boundary i_start="75426" i_stop="75266" i_length="161"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="75265" e_stop="75207" e_length="59"/>
          </exon>
          <intron i_serial="3" don_prob="0.883" acc_prob="0.987">
            <gDNA_intron_boundary i_start="75206" i_stop="75073" i_length="134"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="75072" e_stop="75010" e_length="63"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="76101" stop="75664"/>
              <exon start="75500" stop="75427"/>
              <exon start="75265" stop="75207"/>
              <exon start="75072" stop="75010"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E256318" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="10" AGS_serial="2" gDNA_strand="-"/>
          <translation>
            <gDNA_template>ATAAAACATGATTGAGAGAAATCATGCTGCTAATGGTTCATTACAGTTAGTGGATATGTGATATAATAGATACTTTAATCTGGTAAAAGCTTGATCTGGTTGTTCCTTAGTATGTCATCTGAAAGGTGCTTCCTGTATAAATCCTTTAGCTCTTGTGTTCTATTTCCCATGTTGGTTCTGTCATTAAATGTGTAGTTTTCATGATGTTGCATCTTTTATAGTTCTTGCTTTTATTAACAAAAGTAACAAAGCGCTTCTTTCTTCTCTCTATCCTTTTCCCTGATCATTCTCGTTTCCATTTTTGGGTGATATTTATTTTTTGGGAGCGGAGGGCTCTTTATTCTTCTTTGGTTAATATGGACCTAATCCAAATGTTTTTTATACTAGGTTGGACCGCTTGCAGCATATTATCAGGTGCCAATGCGTCACATCCTTCTG : GTTTACGACGAGATGAGCTTACCCAATGGTATTTTGAGACTCCAGCCAAAAGGAGGACATGGCCATCATAATGG : GGTGAAAAGTGTGATGGAGCATTTGAATGGTCGCCGGGAATTTCCACGATTTTGCATAG : GCATTGGGAATCCACCTGGGACTATGGACATGAAGGCATATCTGTTACAAAAATTCAGTGATA</gDNA_template>
            <first_frame> I  K  H  D  *  E  K  S  C  C  *  W  F  I  T  V  S  G  Y  V  I  *  *  I  L  *  S  G  K  S  L  I  W  L  F  L  S  M  S  S  E  R  C  F  L  Y  K  S  F  S  S  C  V  L  F  P  M  L  V  L  S  L  N  V  *  F  S  *  C  C  I  F  Y  S  S  C  F  Y  *  Q  K  *  Q  S  A  S  F  F  S  L  S  F  S  L  I  I  L  V  S  I  F  G  *  Y  L  F  F  G  S  G  G  L  F  I  L  L  W  L  I  W  T  *  S  K  C  F  L  Y  *  V  G  P  L  A  A  Y  Y  Q  V  P  M  R  H  I  L  L  :  V  Y  D  E  M  S  L  P  N  G  I  L  R  L  Q  P  K  G  G  H  G  H  H  N  G :   V  K  S  V  M  E  H  L  N  G  R  R  E  F  P  R  F  C  I   : G  I  G  N  P  P  G  T  M  D  M  K  A  Y  L  L  Q  K  F  S  D  </first_frame>
            <second_frame>  *  N  M  I  E  R  N  H  A  A  N  G  S  L  Q  L  V  D  M  *  Y  N  R  Y  F  N  L  V  K  A  *  S  G  C  S  L  V  C  H  L  K  G  A  S  C  I  N  P  L  A  L  V  F  Y  F  P  C  W  F  C  H  *  M  C  S  F  H  D  V  A  S  F  I  V  L  A  F  I  N  K  S  N  K  A  L  L  S  S  L  Y  P  F  P  *  S  F  S  F  P  F  L  G  D  I  Y  F  L  G  A  E  G  S  L  F  F  F  G  *  Y  G  P  N  P  N  V  F  Y  T  R  L  D  R  L  Q  H  I  I  R  C  Q  C  V  T  S  F  W :   F  T  T  R  *  A  Y  P  M  V  F  *  D  S  S  Q  K  E  D  M  A  I  I  M   : G  *  K  V  *  W  S  I  *  M  V  A  G  N  F  H  D  F  A  *  :  A  L  G  I  H  L  G  L  W  T  *  R  H  I  C  Y  K  N  S  V  I </second_frame>
            <third_frame>   K  T  *  L  R  E  I  M  L  L  M  V  H  Y  S  *  W  I  C  D  I  I  D  T  L  I  W  *  K  L  D  L  V  V  P  *  Y  V  I  *  K  V  L  P  V  *  I  L  *  L  L  C  S  I  S  H  V  G  S  V  I  K  C  V  V  F  M  M  L  H  L  L  *  F  L  L  L  L  T  K  V  T  K  R  F  F  L  L  S  I  L  F  P  D  H  S  R  F  H  F  W  V  I  F  I  F  W  E  R  R  A  L  Y  S  S  L  V  N  M  D  L  I  Q  M  F  F  I  L  G  W  T  A  C  S  I  L  S  G  A  N  A  S  H  P  S   : G  L  R  R  D  E  L  T  Q  W  Y  F  E  T  P  A  K  R  R  T  W  P  S  *  W  :  G  E  K  C  D  G  A  F  E  W  S  P  G  I  S  T  I  L  H  R :   H  W  E  S  T  W  D  Y  G  H  E  G  I  S  V  T  K  I  Q  *   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02SLe0010E18.1" strand="-"/>
                <serials PGL_serial="10" AGS_serial="2" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="75880" stop="75664"/>
                    <exon start="75500" stop="75430"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>285</number_coding_nucleotides>
                  <number_encoded_amino_acids>95</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>FLLLLTKVTKRFFLLSILFPDHSRFHFWVIFIFWERRALYSSLVNMDLIQMFFILGWTACSILSGANASHPSGLRRDELTQWYFETPAKRRTWPS*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C02SLe0010E18.1" strand="-"/>
                <serials PGL_serial="10" AGS_serial="2" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="75714" stop="75664"/>
                    <exon start="75500" stop="75427"/>
                    <exon start="75265" stop="75207"/>
                    <exon start="75072" stop="75011"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>246</number_coding_nucleotides>
                  <number_encoded_amino_acids>82</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>VGPLAAYYQVPMRHILLVYDEMSLPNGILRLQPKGGHGHHNGVKSVMEHLNGRREFPRFCIGIGNPPGTMDMKAYLLQKFSD</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="3">
          <exon_coordinates>
            <exon e_start="78124" e_stop="78017"/>
            <exon e_start="77919" e_stop="77715"/>
            <exon e_start="77607" e_stop="77523"/>
            <exon e_start="77435" e_stop="77368"/>
            <exon e_start="75714" e_stop="75672"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.998" acc_prob="0.884" e_score="1.000"/>
          <exon-intron don_prob="0.993" acc_prob="0.998" e_score="1.000"/>
          <exon-intron don_prob="0.878" acc_prob="0.969" e_score="1.000"/>
          <exon-intron don_prob="0.987" acc_prob="0.996" e_score="1.000"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="78124" e_stop="78017" e_length="108"/>
          </exon>
          <intron i_serial="1" don_prob="0.998" acc_prob="0.884">
            <gDNA_intron_boundary i_start="78016" i_stop="77920" i_length="97"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="77919" e_stop="77715" e_length="205"/>
          </exon>
          <intron i_serial="2" don_prob="0.993" acc_prob="0.998">
            <gDNA_intron_boundary i_start="77714" i_stop="77608" i_length="107"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="77607" e_stop="77523" e_length="85"/>
          </exon>
          <intron i_serial="3" don_prob="0.878" acc_prob="0.969">
            <gDNA_intron_boundary i_start="77522" i_stop="77436" i_length="87"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="77435" e_stop="77368" e_length="68"/>
          </exon>
          <intron i_serial="4" don_prob="0.987" acc_prob="0.996">
            <gDNA_intron_boundary i_start="77367" i_stop="75715" i_length="1653"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="75714" e_stop="75672" e_length="43"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="78124" stop="78017"/>
              <exon start="77919" stop="77715"/>
              <exon start="77607" stop="77523"/>
              <exon start="77435" stop="77368"/>
              <exon start="75714" stop="75672"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E324042" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="10" AGS_serial="3" gDNA_strand="-"/>
          <translation>
            <gDNA_template>AGAAACATAAATGGTGGTGTCGGGCAAATTCACTCTGCCCAACAGTGCTTCTTCTTAGCTTGAATCATTTTCTTGACCCGTATAAACAGAGAGAAGAGTCCAATTGAG : GTCAATGTTGCATGCAGTATATGCCCCAAAAAGTTGCAGTATATCGTATTCAAGAATCCCTTGTTATCAAAAGCCTTTAGCCCCAACAAGGCTTAGAGTATCAGCTTCACTTCCAGAGCCTAATGGGGTTAAGGTTGAGTTCACTCCTTGGTTAATTGTTGGATTGGGAAATCCTGGAAACAAGTATCACGGAACTCGACACAAT : GTTGGTTTCGAGATGATTGATAGAGTTTCTCAAGAGGAGGGTATCGTGTTAAACACAATACAGTCGAAGGCCTTGATAGGGATAG : GTTCCATTGGGGAGGTACCTGTTGTATTGGCAAAGCCTCAGGCCTACATGAATTTCAGTGGAGAAGCA : GTTGGACCGCTTGCAGCATATTATCAGGTGCCAATGCGTCACA</gDNA_template>
            <first_frame> R  N  I  N  G  G  V  G  Q  I  H  S  A  Q  Q  C  F  F  L  A  *  I  I  F  L  T  R  I  N  R  E  K  S  P  I  E  :  V  N  V  A  C  S  I  C  P  K  K  L  Q  Y  I  V  F  K  N  P  L  L  S  K  A  F  S  P  N  K  A  *  S  I  S  F  T  S  R  A  *  W  G  *  G  *  V  H  S  L  V  N  C  W  I  G  K  S  W  K  Q  V  S  R  N  S  T  Q   : C  W  F  R  D  D  *  *  S  F  S  R  G  G  Y  R  V  K  H  N  T  V  E  G  L  D  R  D  R :   F  H  W  G  G  T  C  C  I  G  K  A  S  G  L  H  E  F  Q  W  R  S   : S  W  T  A  C  S  I  L  S  G  A  N  A  S   </first_frame>
            <second_frame>  E  T  *  M  V  V  S  G  K  F  T  L  P  N  S  A  S  S  *  L  E  S  F  S  *  P  V  *  T  E  R  R  V  Q  L  R :   S  M  L  H  A  V  Y  A  P  K  S  C  S  I  S  Y  S  R  I  P  C  Y  Q  K  P  L  A  P  T  R  L  R  V  S  A  S  L  P  E  P  N  G  V  K  V  E  F  T  P  W  L  I  V  G  L  G  N  P  G  N  K  Y  H  G  T  R  H  N  :  V  G  F  E  M  I  D  R  V  S  Q  E  E  G  I  V  L  N  T  I  Q  S  K  A  L  I  G  I   : G  S  I  G  E  V  P  V  V  L  A  K  P  Q  A  Y  M  N  F  S  G  E  A  :  V  G  P  L  A  A  Y  Y  Q  V  P  M  R  H  </second_frame>
            <third_frame>   K  H  K  W  W  C  R  A  N  S  L  C  P  T  V  L  L  L  S  L  N  H  F  L  D  P  Y  K  Q  R  E  E  S  N  *   : G  Q  C  C  M  Q  Y  M  P  Q  K  V  A  V  Y  R  I  Q  E  S  L  V  I  K  S  L  *  P  Q  Q  G  L  E  Y  Q  L  H  F  Q  S  L  M  G  L  R  L  S  S  L  L  G  *  L  L  D  W  E  I  L  E  T  S  I  T  E  L  D  T  M :   L  V  S  R  *  L  I  E  F  L  K  R  R  V  S  C  *  T  Q  Y  S  R  R  P  *  *  G  *  :  V  P  L  G  R  Y  L  L  Y  W  Q  S  L  R  P  T  *  I  S  V  E  K  Q :   L  D  R  L  Q  H  I  I  R  C  Q  C  V  T </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02SLe0010E18.1" strand="-"/>
                <serials PGL_serial="10" AGS_serial="3" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="78039" stop="78017"/>
                    <exon start="77919" stop="77715"/>
                    <exon start="77607" stop="77523"/>
                    <exon start="77435" stop="77368"/>
                    <exon start="75714" stop="75673"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>423</number_coding_nucleotides>
                  <number_encoded_amino_acids>141</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>TERRVQLRSMLHAVYAPKSCSISYSRIPCYQKPLAPTRLRVSASLPEPNGVKVEFTPWLIVGLGNPGNKYHGTRHNVGFEMIDRVSQEEGIVLNTIQSKALIGIGSIGEVPVVLAKPQAYMNFSGEAVGPLAAYYQVPMRH</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="11" PGL_strand="+" PGL_start="82443" PGL_stop="92401"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="82443" e_stop="82587"/>
            <exon e_start="82878" e_stop="83152"/>
            <exon e_start="84159" e_stop="84273"/>
            <exon e_start="85982" e_stop="86049"/>
            <exon e_start="86310" e_stop="86442"/>
            <exon e_start="86526" e_stop="86625"/>
            <exon e_start="86723" e_stop="86835"/>
            <exon e_start="88070" e_stop="88163"/>
            <exon e_start="88279" e_stop="88432"/>
            <exon e_start="89309" e_stop="89455"/>
            <exon e_start="89535" e_stop="89608"/>
            <exon e_start="90610" e_stop="90698"/>
            <exon e_start="90869" e_stop="90983"/>
            <exon e_start="91478" e_stop="91939"/>
            <exon e_start="91990" e_stop="92004"/>
            <exon e_start="92380" e_stop="92401"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.879" acc_prob="0.996" e_score="0.979"/>
          <exon-intron don_prob="0.982" acc_prob="0.718" e_score="0.960"/>
          <exon-intron don_prob="0.301" acc_prob="1.000" e_score="1.000"/>
          <exon-intron don_prob="1.000" acc_prob="0.878" e_score="1.000"/>
          <exon-intron don_prob="0.858" acc_prob="0.397" e_score="1.000"/>
          <exon-intron don_prob="0.980" acc_prob="0.091" e_score="1.000"/>
          <exon-intron don_prob="0.959" acc_prob="0.977" e_score="1.000"/>
          <exon-intron don_prob="0.923" acc_prob="0.906" e_score="0.989"/>
          <exon-intron don_prob="0.994" acc_prob="0.989" e_score="1.000"/>
          <exon-intron don_prob="0.999" acc_prob="0.999" e_score="1.000"/>
          <exon-intron don_prob="0.986" acc_prob="0.987" e_score="1.000"/>
          <exon-intron don_prob="0.991" acc_prob="0.996" e_score="1.000"/>
          <exon-intron don_prob="0.140" acc_prob="0.664" e_score="1.000"/>
          <exon-intron don_prob="0.097" acc_prob="0.933" e_score="0.879"/>
          <exon-intron don_prob="0.000" acc_prob="0.000" e_score="0.733"/>
          <exon-only e_score="0.773"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.979">
            <gDNA_exon_boundary e_start="82443" e_stop="82587" e_length="145"/>
          </exon>
          <intron i_serial="1" don_prob="0.879" acc_prob="0.996">
            <gDNA_intron_boundary i_start="82588" i_stop="82877" i_length="290"/>
          </intron>
          <exon e_serial="2" e_score="0.960">
            <gDNA_exon_boundary e_start="82878" e_stop="83152" e_length="275"/>
          </exon>
          <intron i_serial="2" don_prob="0.982" acc_prob="0.718">
            <gDNA_intron_boundary i_start="83153" i_stop="84158" i_length="1006"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="84159" e_stop="84273" e_length="115"/>
          </exon>
          <intron i_serial="3" don_prob="0.301" acc_prob="1.000">
            <gDNA_intron_boundary i_start="84274" i_stop="85981" i_length="1708"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="85982" e_stop="86049" e_length="68"/>
          </exon>
          <intron i_serial="4" don_prob="1.000" acc_prob="0.878">
            <gDNA_intron_boundary i_start="86050" i_stop="86309" i_length="260"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="86310" e_stop="86442" e_length="133"/>
          </exon>
          <intron i_serial="5" don_prob="0.858" acc_prob="0.397">
            <gDNA_intron_boundary i_start="86443" i_stop="86525" i_length="83"/>
          </intron>
          <exon e_serial="6" e_score="1.000">
            <gDNA_exon_boundary e_start="86526" e_stop="86625" e_length="100"/>
          </exon>
          <intron i_serial="6" don_prob="0.980" acc_prob="0.091">
            <gDNA_intron_boundary i_start="86626" i_stop="86722" i_length="97"/>
          </intron>
          <exon e_serial="7" e_score="1.000">
            <gDNA_exon_boundary e_start="86723" e_stop="86835" e_length="113"/>
          </exon>
          <intron i_serial="7" don_prob="0.959" acc_prob="0.977">
            <gDNA_intron_boundary i_start="86836" i_stop="88069" i_length="1234"/>
          </intron>
          <exon e_serial="8" e_score="0.989">
            <gDNA_exon_boundary e_start="88070" e_stop="88163" e_length="94"/>
          </exon>
          <intron i_serial="8" don_prob="0.923" acc_prob="0.906">
            <gDNA_intron_boundary i_start="88164" i_stop="88278" i_length="115"/>
          </intron>
          <exon e_serial="9" e_score="1.000">
            <gDNA_exon_boundary e_start="88279" e_stop="88432" e_length="154"/>
          </exon>
          <intron i_serial="9" don_prob="0.994" acc_prob="0.989">
            <gDNA_intron_boundary i_start="88433" i_stop="89308" i_length="876"/>
          </intron>
          <exon e_serial="10" e_score="1.000">
            <gDNA_exon_boundary e_start="89309" e_stop="89455" e_length="147"/>
          </exon>
          <intron i_serial="10" don_prob="0.999" acc_prob="0.999">
            <gDNA_intron_boundary i_start="89456" i_stop="89534" i_length="79"/>
          </intron>
          <exon e_serial="11" e_score="1.000">
            <gDNA_exon_boundary e_start="89535" e_stop="89608" e_length="74"/>
          </exon>
          <intron i_serial="11" don_prob="0.986" acc_prob="0.987">
            <gDNA_intron_boundary i_start="89609" i_stop="90609" i_length="1001"/>
          </intron>
          <exon e_serial="12" e_score="1.000">
            <gDNA_exon_boundary e_start="90610" e_stop="90698" e_length="89"/>
          </exon>
          <intron i_serial="12" don_prob="0.991" acc_prob="0.996">
            <gDNA_intron_boundary i_start="90699" i_stop="90868" i_length="170"/>
          </intron>
          <exon e_serial="13" e_score="1.000">
            <gDNA_exon_boundary e_start="90869" e_stop="90983" e_length="115"/>
          </exon>
          <intron i_serial="13" don_prob="0.140" acc_prob="0.664">
            <gDNA_intron_boundary i_start="90984" i_stop="91477" i_length="494"/>
          </intron>
          <exon e_serial="14" e_score="0.879">
            <gDNA_exon_boundary e_start="91478" e_stop="91939" e_length="462"/>
          </exon>
          <intron i_serial="14" don_prob="0.097" acc_prob="0.933">
            <gDNA_intron_boundary i_start="91940" i_stop="91989" i_length="50"/>
          </intron>
          <exon e_serial="15" e_score="0.733">
            <gDNA_exon_boundary e_start="91990" e_stop="92004" e_length="15"/>
          </exon>
          <intron i_serial="15" don_prob="0.000" acc_prob="0.000">
            <gDNA_intron_boundary i_start="92005" i_stop="92379" i_length="375"/>
          </intron>
          <exon e_serial="16" e_score="0.773">
            <gDNA_exon_boundary e_start="92380" e_stop="92401" e_length="22"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="82443" stop="82587"/>
              <exon start="82878" stop="83152"/>
              <exon start="84159" stop="84273"/>
              <exon start="85982" stop="86049"/>
              <exon start="86310" stop="86442"/>
              <exon start="86526" stop="86625"/>
              <exon start="86723" stop="86835"/>
              <exon start="88070" stop="88163"/>
              <exon start="88279" stop="88432"/>
              <exon start="89309" stop="89455"/>
              <exon start="89535" stop="89608"/>
              <exon start="90610" stop="90698"/>
              <exon start="90869" stop="90983"/>
              <exon start="91478" stop="91939"/>
              <exon start="91990" stop="92004"/>
              <exon start="92380" stop="92401"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E746989" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="82443" stop="82587"/>
              <exon start="82878" stop="83152"/>
              <exon start="84159" stop="84273"/>
              <exon start="85982" stop="86049"/>
              <exon start="86310" stop="86442"/>
              <exon start="86526" stop="86577"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E549331" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="82444" stop="82587"/>
              <exon start="82878" stop="83106"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E358647" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="82939" stop="83152"/>
              <exon start="84159" stop="84219"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E278519" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="83055" stop="83152"/>
              <exon start="84159" stop="84273"/>
              <exon start="85982" stop="86049"/>
              <exon start="86310" stop="86442"/>
              <exon start="86526" stop="86625"/>
              <exon start="86723" stop="86835"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E347003" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="84188" stop="84273"/>
              <exon start="85982" stop="86049"/>
              <exon start="86310" stop="86442"/>
              <exon start="86526" stop="86625"/>
              <exon start="86723" stop="86799"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E246497" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="88113" stop="88163"/>
              <exon start="88279" stop="88432"/>
              <exon start="89309" stop="89455"/>
              <exon start="89535" stop="89608"/>
              <exon start="90610" stop="90698"/>
              <exon start="90869" stop="90983"/>
              <exon start="91478" stop="91623"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E700951" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="90610" stop="90698"/>
              <exon start="90869" stop="90983"/>
              <exon start="91478" stop="91829"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E337065" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="90918" stop="90983"/>
              <exon start="91478" stop="91888"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E283400" strand="-"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="11" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>CTCTCTTCGAATTCATCGAACCTCCCAATGCAAATTCTGCTGTAATTTTACGATAAAGCAACAAAGAAGAACATTCATCGAAGAGGATACAGTTAGCAACTCTATAATCTCTCACCTTCAACACTCTACTTTGCATAATTTCACT : GTGCTTAGCATAAAAGGCTTTCAAAATGCAAGCTTCAACTTTCACAGTCAAAGGCAACACAGCATTTGGCCTTCAAAATCGAAGGATTTTGCAAGGGGTTAGTGATTTGCGTAGTAGGACTTTAGCTGGTAAAAGTCTTCGGATGACGGGCAGTTGCTTCGGAGTAAGTATGGATTCTGCTTCAATGGGAATCGAACTTGGCCGTGCTAGGAGGACTGTTCAAAGTGTCTTCGGTTCGTCCGCGAAGGCCAGATCACACAGAGTTCGAGCTGCTG : GAGAGGATATTGAGGATGCAGCACCTCTCAAAGTTCAAGGCCAATCATCTGGATCAGTACTTCCCTATGTGGGTGTAGCTTGTCTGGCAGCAATTTTATTTGGATATCACCTAGG : GGTGGTGAATGGTGCCCTTGAGTACCTAGCTAAGGATCTTGGGATTGCCGAGAACACTGTTATACAAG : GATGGATTGTTAGCACAGTTCTTGCTGGTGCCTTTGTTGGTTCATTTACTGGTGGAGCTCTGGCTGATAAATTTGGCCGAACAAAGACATTTATATTGGATGCAATTCCACTTTCAGTTGGTGCGTTTCTATG : TACCACTGCCCAGAGTGTTCAGGCTATGATCATTGGACGCTTACTTACTGGAATTGGCATTGGCATCTCATCTGCTATTGTGCCACTTTACATATCTGAG : ATCTCACCCACGGAAATTCGCGGCACACTGGGAACGGTCAATCAGCTATTCATTTGCATTGGAATTCTTGTTGCACTAGTGGCTGGATTGCCTTTGTCTGGAAATCCTTCATG : GTGGAGAACAATGTTTGGTCTCGCACTTATTCCATCTGTTTTACTTGCAATAGGAATGGTATTTTCTCCCGAAAGTCCTCGGTGGCTCTATCAG : CAAGGGAGAATATCTGAAGCTGAGACATCTATTAAAAGGCTATATGGTAAAGAAAAAGTTGCTGAGGTTATGGGTGATTTGGAAGCTTCTGCCCAGGGTTCTTCAGAACCAGATGCTGGGTGGCTTGATCTATTTAGTAGCCGTTATAGGAAAG : TTGTTAGCATTGGTGCAGCTATGTTCTTTTTGCAGCAGTTGGCTGGGATAAATGCAGTTGTCTATTATTCCACTGCCGTGTTCCGAAGCGCTGGAATTACATCTGATGTAGCAGCCAGTGCTCTGGTTGGAGCAGCCAACGTCTTTG : GGACAACGGTGGCATCCTCTTTGATGGACAAACAAGGAAGGAAGAGTCTCTTGCTCATAAGCTATACTGGAATG : GCTGCATCAATGATGTTGCTTTCCTTGTCATTCACTTGGAAGGTCCTGACTCCATATTCTGGCACACTGGCTGTTCTTGGTACTGTCCT : CTATGTGTTGTCCTTTTCACTTGGTGCTGGTCCTGTGCCTGCTCTTCTACTTCCAGAAATATTTGCTTCCAGAATTAGGGCAAAAGCAGTGGCTCTCTCTTTGGGGGTACATTGG : ATAATGAACTTCTTTATTGGCCTGTACTTCTTGAGCATTGTAACTAAATTTGGTATCAGTACGGTGTACATGGGATTTGCACTCTCTTGTCTTGTTGCTGTCGTATATATAACTGGTAACGTCGTGGAGACAAAGGGGCGGTCACTGGAGGAGATAGAACGTGAGTTAAGTCCAGCAATTTGAGTGGTACCGCATGAACAGCTGAGAGTAATTTCAGCTTCCGCCTTCCAGTGGGTCTGGATTTTGAAGAGATTCTCCGGGTCCTGACTGGAGTTGTATCACTTACCTTCAGCTATCTCTTTGATTTTCTTACACACCGGCTTCATGAATCATGGGACATTGTAAAAACATGCAACTGTTATGGAAGATGATCCGCGTATAATTGAGTATTTCGGAACTCATCTTCAGCTGTTAATTATTATGGAATGCAGTTAAACCGTAGGTGTGCAAGATGATAATCAT : CGTAAATCAGGAAAT : TATCAGAAAGAAAGAAACATAA</gDNA_template>
            <first_frame> L  S  S  N  S  S  N  L  P  M  Q  I  L  L  *  F  Y  D  K  A  T  K  K  N  I  H  R  R  G  Y  S  *  Q  L  Y  N  L  S  P  S  T  L  Y  F  A  *  F  H   : C  A  *  H  K  R  L  S  K  C  K  L  Q  L  S  Q  S  K  A  T  Q  H  L  A  F  K  I  E  G  F  C  K  G  L  V  I  C  V  V  G  L  *  L  V  K  V  F  G  *  R  A  V  A  S  E  *  V  W  I  L  L  Q  W  E  S  N  L  A  V  L  G  G  L  F  K  V  S  S  V  R  P  R  R  P  D  H  T  E  F  E  L  L  :  E  R  I  L  R  M  Q  H  L  S  K  F  K  A  N  H  L  D  Q  Y  F  P  M  W  V  *  L  V  W  Q  Q  F  Y  L  D  I  T  *   : G  W  *  M  V  P  L  S  T  *  L  R  I  L  G  L  P  R  T  L  L  Y  K  :  D  G  L  L  A  Q  F  L  L  V  P  L  L  V  H  L  L  V  E  L  W  L  I  N  L  A  E  Q  R  H  L  Y  W  M  Q  F  H  F  Q  L  V  R  F  Y   : V  P  L  P  R  V  F  R  L  *  S  L  D  A  Y  L  L  E  L  A  L  A  S  H  L  L  L  C  H  F  T  Y  L  R :   S  H  P  R  K  F  A  A  H  W  E  R  S  I  S  Y  S  F  A  L  E  F  L  L  H  *  W  L  D  C  L  C  L  E  I  L  H   : G  G  E  Q  C  L  V  S  H  L  F  H  L  F  Y  L  Q  *  E  W  Y  F  L  P  K  V  L  G  G  S  I  S :   K  G  E  Y  L  K  L  R  H  L  L  K  G  Y  M  V  K  K  K  L  L  R  L  W  V  I  W  K  L  L  P  R  V  L  Q  N  Q  M  L  G  G  L  I  Y  L  V  A  V  I  G  K  :  L  L  A  L  V  Q  L  C  S  F  C  S  S  W  L  G  *  M  Q  L  S  I  I  P  L  P  C  S  E  A  L  E  L  H  L  M  *  Q  P  V  L  W  L  E  Q  P  T  S  L  :  G  Q  R  W  H  P  L  *  W  T  N  K  E  G  R  V  S  C  S  *  A  I  L  E  W :   L  H  Q  *  C  C  F  P  C  H  S  L  G  R  S  *  L  H  I  L  A  H  W  L  F  L  V  L  S   : S  M  C  C  P  F  H  L  V  L  V  L  C  L  L  F  Y  F  Q  K  Y  L  L  P  E  L  G  Q  K  Q  W  L  S  L  W  G  Y  I  G :   *  *  T  S  L  L  A  C  T  S  *  A  L  *  L  N  L  V  S  V  R  C  T  W  D  L  H  S  L  V  L  L  L  S  Y  I  *  L  V  T  S  W  R  Q  R  G  G  H  W  R  R  *  N  V  S  *  V  Q  Q  F  E  W  Y  R  M  N  S  *  E  *  F  Q  L  P  P  S  S  G  S  G  F  *  R  D  S  P  G  P  D  W  S  C  I  T  Y  L  Q  L  S  L  *  F  S  Y  T  P  A  S  *  I  M  G  H  C  K  N  M  Q  L  L  W  K  M  I  R  V  *  L  S  I  S  E  L  I  F  S  C  *  L  L  W  N  A  V  K  P  *  V  C  K  M  I  I  I :   V  N  Q  E  I :   I  R  K  K  E  T  * </first_frame>
            <second_frame>  S  L  R  I  H  R  T  S  Q  C  K  F  C  C  N  F  T  I  K  Q  Q  R  R  T  F  I  E  E  D  T  V  S  N  S  I  I  S  H  L  Q  H  S  T  L  H  N  F  T  :  V  L  S  I  K  G  F  Q  N  A  S  F  N  F  H  S  Q  R  Q  H  S  I  W  P  S  K  S  K  D  F  A  R  G  *  *  F  A  *  *  D  F  S  W  *  K  S  S  D  D  G  Q  L  L  R  S  K  Y  G  F  C  F  N  G  N  R  T  W  P  C  *  E  D  C  S  K  C  L  R  F  V  R  E  G  Q  I  T  Q  S  S  S  C  W :   R  G  Y  *  G  C  S  T  S  Q  S  S  R  P  I  I  W  I  S  T  S  L  C  G  C  S  L  S  G  S  N  F  I  W  I  S  P  R  :  G  G  E  W  C  P  *  V  P  S  *  G  S  W  D  C  R  E  H  C  Y  T  R :   M  D  C  *  H  S  S  C  W  C  L  C  W  F  I  Y  W  W  S  S  G  *  *  I  W  P  N  K  D  I  Y  I  G  C  N  S  T  F  S  W  C  V  S  M  :  Y  H  C  P  E  C  S  G  Y  D  H  W  T  L  T  Y  W  N  W  H  W  H  L  I  C  Y  C  A  T  L  H  I  *   : D  L  T  H  G  N  S  R  H  T  G  N  G  Q  S  A  I  H  L  H  W  N  S  C  C  T  S  G  W  I  A  F  V  W  K  S  F  M  :  V  E  N  N  V  W  S  R  T  Y  S  I  C  F  T  C  N  R  N  G  I  F  S  R  K  S  S  V  A  L  S   : A  R  E  N  I  *  S  *  D  I  Y  *  K  A  I  W  *  R  K  S  C  *  G  Y  G  *  F  G  S  F  C  P  G  F  F  R  T  R  C  W  V  A  *  S  I  *  *  P  L  *  E  S :   C  *  H  W  C  S  Y  V  L  F  A  A  V  G  W  D  K  C  S  C  L  L  F  H  C  R  V  P  K  R  W  N  Y  I  *  C  S  S  Q  C  S  G  W  S  S  Q  R  L  W :   D  N  G  G  I  L  F  D  G  Q  T  R  K  E  E  S  L  A  H  K  L  Y  W  N   : G  C  I  N  D  V  A  F  L  V  I  H  L  E  G  P  D  S  I  F  W  H  T  G  C  S  W  Y  C  P  :  L  C  V  V  L  F  T  W  C  W  S  C  A  C  S  S  T  S  R  N  I  C  F  Q  N  *  G  K  S  S  G  S  L  F  G  G  T  L   : D  N  E  L  L  Y  W  P  V  L  L  E  H  C  N  *  I  W  Y  Q  Y  G  V  H  G  I  C  T  L  L  S  C  C  C  R  I  Y  N  W  *  R  R  G  D  K  G  A  V  T  G  G  D  R  T  *  V  K  S  S  N  L  S  G  T  A  *  T  A  E  S  N  F  S  F  R  L  P  V  G  L  D  F  E  E  I  L  R  V  L  T  G  V  V  S  L  T  F  S  Y  L  F  D  F  L  T  H  R  L  H  E  S  W  D  I  V  K  T  C  N  C  Y  G  R  *  S  A  Y  N  *  V  F  R  N  S  S  S  A  V  N  Y  Y  G  M  Q  L  N  R  R  C  A  R  *  *  S   : S  *  I  R  K   : L  S  E  R  K  K  H   </second_frame>
            <third_frame>   L  F  E  F  I  E  P  P  N  A  N  S  A  V  I  L  R  *  S  N  K  E  E  H  S  S  K  R  I  Q  L  A  T  L  *  S  L  T  F  N  T  L  L  C  I  I  S  L :   C  L  A  *  K  A  F  K  M  Q  A  S  T  F  T  V  K  G  N  T  A  F  G  L  Q  N  R  R  I  L  Q  G  V  S  D  L  R  S  R  T  L  A  G  K  S  L  R  M  T  G  S  C  F  G  V  S  M  D  S  A  S  M  G  I  E  L  G  R  A  R  R  T  V  Q  S  V  F  G  S  S  A  K  A  R  S  H  R  V  R  A  A   : G  E  D  I  E  D  A  A  P  L  K  V  Q  G  Q  S  S  G  S  V  L  P  Y  V  G  V  A  C  L  A  A  I  L  F  G  Y  H  L  G :   V  V  N  G  A  L  E  Y  L  A  K  D  L  G  I  A  E  N  T  V  I  Q   : G  W  I  V  S  T  V  L  A  G  A  F  V  G  S  F  T  G  G  A  L  A  D  K  F  G  R  T  K  T  F  I  L  D  A  I  P  L  S  V  G  A  F  L  C :   T  T  A  Q  S  V  Q  A  M  I  I  G  R  L  L  T  G  I  G  I  G  I  S  S  A  I  V  P  L  Y  I  S  E  :  I  S  P  T  E  I  R  G  T  L  G  T  V  N  Q  L  F  I  C  I  G  I  L  V  A  L  V  A  G  L  P  L  S  G  N  P  S  W :   W  R  T  M  F  G  L  A  L  I  P  S  V  L  L  A  I  G  M  V  F  S  P  E  S  P  R  W  L  Y  Q  :  Q  G  R  I  S  E  A  E  T  S  I  K  R  L  Y  G  K  E  K  V  A  E  V  M  G  D  L  E  A  S  A  Q  G  S  S  E  P  D  A  G  W  L  D  L  F  S  S  R  Y  R  K   : V  V  S  I  G  A  A  M  F  F  L  Q  Q  L  A  G  I  N  A  V  V  Y  Y  S  T  A  V  F  R  S  A  G  I  T  S  D  V  A  A  S  A  L  V  G  A  A  N  V  F   : G  T  T  V  A  S  S  L  M  D  K  Q  G  R  K  S  L  L  L  I  S  Y  T  G  M  :  A  A  S  M  M  L  L  S  L  S  F  T  W  K  V  L  T  P  Y  S  G  T  L  A  V  L  G  T  V  L :   Y  V  L  S  F  S  L  G  A  G  P  V  P  A  L  L  L  P  E  I  F  A  S  R  I  R  A  K  A  V  A  L  S  L  G  V  H  W  :  I  M  N  F  F  I  G  L  Y  F  L  S  I  V  T  K  F  G  I  S  T  V  Y  M  G  F  A  L  S  C  L  V  A  V  V  Y  I  T  G  N  V  V  E  T  K  G  R  S  L  E  E  I  E  R  E  L  S  P  A  I  *  V  V  P  H  E  Q  L  R  V  I  S  A  S  A  F  Q  W  V  W  I  L  K  R  F  S  G  S  *  L  E  L  Y  H  L  P  S  A  I  S  L  I  F  L  H  T  G  F  M  N  H  G  T  L  *  K  H  A  T  V  M  E  D  D  P  R  I  I  E  Y  F  G  T  H  L  Q  L  L  I  I  M  E  C  S  *  T  V  G  V  Q  D  D  N  H  :  R  K  S  G  N  :  Y  Q  K  E  R  N  I  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02SLe0010E18.1" strand="+"/>
                <serials PGL_serial="11" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="82891" stop="83152"/>
                    <exon start="84159" stop="84273"/>
                    <exon start="85982" stop="86049"/>
                    <exon start="86310" stop="86442"/>
                    <exon start="86526" stop="86625"/>
                    <exon start="86723" stop="86835"/>
                    <exon start="88070" stop="88163"/>
                    <exon start="88279" stop="88432"/>
                    <exon start="89309" stop="89455"/>
                    <exon start="89535" stop="89608"/>
                    <exon start="90610" stop="90698"/>
                    <exon start="90869" stop="90983"/>
                    <exon start="91478" stop="91660"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>1644</number_coding_nucleotides>
                  <number_encoded_amino_acids>548</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>KAFKMQASTFTVKGNTAFGLQNRRILQGVSDLRSRTLAGKSLRMTGSCFGVSMDSASMGIELGRARRTVQSVFGSSAKARSHRVRAAGEDIEDAAPLKVQGQSSGSVLPYVGVACLAAILFGYHLGVVNGALEYLAKDLGIAENTVIQGWIVSTVLAGAFVGSFTGGALADKFGRTKTFILDAIPLSVGAFLCTTAQSVQAMIIGRLLTGIGIGISSAIVPLYISEISPTEIRGTLGTVNQLFICIGILVALVAGLPLSGNPSWWRTMFGLALIPSVLLAIGMVFSPESPRWLYQQGRISEAETSIKRLYGKEKVAEVMGDLEASAQGSSEPDAGWLDLFSSRYRKVVSIGAAMFFLQQLAGINAVVYYSTAVFRSAGITSDVAASALVGAANVFGTTVASSLMDKQGRKSLLLISYTGMAASMMLLSLSFTWKVLTPYSGTLAVLGTVLYVLSFSLGAGPVPALLLPEIFASRIRAKAVALSLGVHWIMNFFIGLYFLSIVTKFGISTVYMGFALSCLVAVVYITGNVVETKGRSLEEIERELSPAI*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="2">
          <exon_coordinates>
            <exon e_start="82443" e_stop="82587"/>
            <exon e_start="82878" e_stop="83152"/>
            <exon e_start="84159" e_stop="84273"/>
            <exon e_start="85982" e_stop="86049"/>
            <exon e_start="86310" e_stop="86442"/>
            <exon e_start="86526" e_stop="86625"/>
            <exon e_start="86723" e_stop="86835"/>
            <exon e_start="88123" e_stop="88163"/>
            <exon e_start="88279" e_stop="88414"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.879" acc_prob="0.996" e_score="0.979"/>
          <exon-intron don_prob="0.982" acc_prob="0.718" e_score="0.960"/>
          <exon-intron don_prob="0.301" acc_prob="1.000" e_score="1.000"/>
          <exon-intron don_prob="1.000" acc_prob="0.878" e_score="1.000"/>
          <exon-intron don_prob="0.858" acc_prob="0.397" e_score="1.000"/>
          <exon-intron don_prob="0.980" acc_prob="0.091" e_score="1.000"/>
          <exon-intron don_prob="0.959" acc_prob="0.582" e_score="1.000"/>
          <exon-intron don_prob="0.923" acc_prob="0.906" e_score="1.000"/>
          <exon-only e_score="0.993"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.979">
            <gDNA_exon_boundary e_start="82443" e_stop="82587" e_length="145"/>
          </exon>
          <intron i_serial="1" don_prob="0.879" acc_prob="0.996">
            <gDNA_intron_boundary i_start="82588" i_stop="82877" i_length="290"/>
          </intron>
          <exon e_serial="2" e_score="0.960">
            <gDNA_exon_boundary e_start="82878" e_stop="83152" e_length="275"/>
          </exon>
          <intron i_serial="2" don_prob="0.982" acc_prob="0.718">
            <gDNA_intron_boundary i_start="83153" i_stop="84158" i_length="1006"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="84159" e_stop="84273" e_length="115"/>
          </exon>
          <intron i_serial="3" don_prob="0.301" acc_prob="1.000">
            <gDNA_intron_boundary i_start="84274" i_stop="85981" i_length="1708"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="85982" e_stop="86049" e_length="68"/>
          </exon>
          <intron i_serial="4" don_prob="1.000" acc_prob="0.878">
            <gDNA_intron_boundary i_start="86050" i_stop="86309" i_length="260"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="86310" e_stop="86442" e_length="133"/>
          </exon>
          <intron i_serial="5" don_prob="0.858" acc_prob="0.397">
            <gDNA_intron_boundary i_start="86443" i_stop="86525" i_length="83"/>
          </intron>
          <exon e_serial="6" e_score="1.000">
            <gDNA_exon_boundary e_start="86526" e_stop="86625" e_length="100"/>
          </exon>
          <intron i_serial="6" don_prob="0.980" acc_prob="0.091">
            <gDNA_intron_boundary i_start="86626" i_stop="86722" i_length="97"/>
          </intron>
          <exon e_serial="7" e_score="1.000">
            <gDNA_exon_boundary e_start="86723" e_stop="86835" e_length="113"/>
          </exon>
          <intron i_serial="7" don_prob="0.959" acc_prob="0.582">
            <gDNA_intron_boundary i_start="86836" i_stop="88122" i_length="1287"/>
          </intron>
          <exon e_serial="8" e_score="1.000">
            <gDNA_exon_boundary e_start="88123" e_stop="88163" e_length="41"/>
          </exon>
          <intron i_serial="8" don_prob="0.923" acc_prob="0.906">
            <gDNA_intron_boundary i_start="88164" i_stop="88278" i_length="115"/>
          </intron>
          <exon e_serial="9" e_score="0.993">
            <gDNA_exon_boundary e_start="88279" e_stop="88414" e_length="136"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="82443" stop="82587"/>
              <exon start="82878" stop="83152"/>
              <exon start="84159" stop="84273"/>
              <exon start="85982" stop="86049"/>
              <exon start="86310" stop="86442"/>
              <exon start="86526" stop="86577"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E549331" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="82444" stop="82587"/>
              <exon start="82878" stop="83106"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E358647" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="82939" stop="83152"/>
              <exon start="84159" stop="84219"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E278519" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="83055" stop="83152"/>
              <exon start="84159" stop="84273"/>
              <exon start="85982" stop="86049"/>
              <exon start="86310" stop="86442"/>
              <exon start="86526" stop="86625"/>
              <exon start="86723" stop="86835"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E347003" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="84188" stop="84273"/>
              <exon start="85982" stop="86049"/>
              <exon start="86310" stop="86442"/>
              <exon start="86526" stop="86625"/>
              <exon start="86723" stop="86799"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E246497" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="86035" stop="86049"/>
              <exon start="86310" stop="86442"/>
              <exon start="86526" stop="86625"/>
              <exon start="86723" stop="86835"/>
              <exon start="88123" stop="88163"/>
              <exon start="88279" stop="88414"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E247107" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="11" AGS_serial="2" gDNA_strand="+"/>
          <translation>
            <gDNA_template>CTCTCTTCGAATTCATCGAACCTCCCAATGCAAATTCTGCTGTAATTTTACGATAAAGCAACAAAGAAGAACATTCATCGAAGAGGATACAGTTAGCAACTCTATAATCTCTCACCTTCAACACTCTACTTTGCATAATTTCACT : GTGCTTAGCATAAAAGGCTTTCAAAATGCAAGCTTCAACTTTCACAGTCAAAGGCAACACAGCATTTGGCCTTCAAAATCGAAGGATTTTGCAAGGGGTTAGTGATTTGCGTAGTAGGACTTTAGCTGGTAAAAGTCTTCGGATGACGGGCAGTTGCTTCGGAGTAAGTATGGATTCTGCTTCAATGGGAATCGAACTTGGCCGTGCTAGGAGGACTGTTCAAAGTGTCTTCGGTTCGTCCGCGAAGGCCAGATCACACAGAGTTCGAGCTGCTG : GAGAGGATATTGAGGATGCAGCACCTCTCAAAGTTCAAGGCCAATCATCTGGATCAGTACTTCCCTATGTGGGTGTAGCTTGTCTGGCAGCAATTTTATTTGGATATCACCTAGG : GGTGGTGAATGGTGCCCTTGAGTACCTAGCTAAGGATCTTGGGATTGCCGAGAACACTGTTATACAAG : GATGGATTGTTAGCACAGTTCTTGCTGGTGCCTTTGTTGGTTCATTTACTGGTGGAGCTCTGGCTGATAAATTTGGCCGAACAAAGACATTTATATTGGATGCAATTCCACTTTCAGTTGGTGCGTTTCTATG : TACCACTGCCCAGAGTGTTCAGGCTATGATCATTGGACGCTTACTTACTGGAATTGGCATTGGCATCTCATCTGCTATTGTGCCACTTTACATATCTGAG : ATCTCACCCACGGAAATTCGCGGCACACTGGGAACGGTCAATCAGCTATTCATTTGCATTGGAATTCTTGTTGCACTAGTGGCTGGATTGCCTTTGTCTGGAAATCCTTCATG : GAATGGTATTTTCTCCCGAAAGTCCTCGGTGGCTCTATCAG : CAAGGGAGAATATCTGAAGCTGAGACATCTATTAAAAGGCTATATGGTAAAGAAAAAGTTGCTGAGGTTATGGGTGATTTGGAAGCTTCTGCCCAGGGTTCTTCAGAACCAGATGCTGGGTGGCTTGATCTATTTA</gDNA_template>
            <first_frame> L  S  S  N  S  S  N  L  P  M  Q  I  L  L  *  F  Y  D  K  A  T  K  K  N  I  H  R  R  G  Y  S  *  Q  L  Y  N  L  S  P  S  T  L  Y  F  A  *  F  H   : C  A  *  H  K  R  L  S  K  C  K  L  Q  L  S  Q  S  K  A  T  Q  H  L  A  F  K  I  E  G  F  C  K  G  L  V  I  C  V  V  G  L  *  L  V  K  V  F  G  *  R  A  V  A  S  E  *  V  W  I  L  L  Q  W  E  S  N  L  A  V  L  G  G  L  F  K  V  S  S  V  R  P  R  R  P  D  H  T  E  F  E  L  L  :  E  R  I  L  R  M  Q  H  L  S  K  F  K  A  N  H  L  D  Q  Y  F  P  M  W  V  *  L  V  W  Q  Q  F  Y  L  D  I  T  *   : G  W  *  M  V  P  L  S  T  *  L  R  I  L  G  L  P  R  T  L  L  Y  K  :  D  G  L  L  A  Q  F  L  L  V  P  L  L  V  H  L  L  V  E  L  W  L  I  N  L  A  E  Q  R  H  L  Y  W  M  Q  F  H  F  Q  L  V  R  F  Y   : V  P  L  P  R  V  F  R  L  *  S  L  D  A  Y  L  L  E  L  A  L  A  S  H  L  L  L  C  H  F  T  Y  L  R :   S  H  P  R  K  F  A  A  H  W  E  R  S  I  S  Y  S  F  A  L  E  F  L  L  H  *  W  L  D  C  L  C  L  E  I  L  H   : G  M  V  F  S  P  E  S  P  R  W  L  Y  Q  :  Q  G  R  I  S  E  A  E  T  S  I  K  R  L  Y  G  K  E  K  V  A  E  V  M  G  D  L  E  A  S  A  Q  G  S  S  E  P  D  A  G  W  L  D  L  F  </first_frame>
            <second_frame>  S  L  R  I  H  R  T  S  Q  C  K  F  C  C  N  F  T  I  K  Q  Q  R  R  T  F  I  E  E  D  T  V  S  N  S  I  I  S  H  L  Q  H  S  T  L  H  N  F  T  :  V  L  S  I  K  G  F  Q  N  A  S  F  N  F  H  S  Q  R  Q  H  S  I  W  P  S  K  S  K  D  F  A  R  G  *  *  F  A  *  *  D  F  S  W  *  K  S  S  D  D  G  Q  L  L  R  S  K  Y  G  F  C  F  N  G  N  R  T  W  P  C  *  E  D  C  S  K  C  L  R  F  V  R  E  G  Q  I  T  Q  S  S  S  C  W :   R  G  Y  *  G  C  S  T  S  Q  S  S  R  P  I  I  W  I  S  T  S  L  C  G  C  S  L  S  G  S  N  F  I  W  I  S  P  R  :  G  G  E  W  C  P  *  V  P  S  *  G  S  W  D  C  R  E  H  C  Y  T  R :   M  D  C  *  H  S  S  C  W  C  L  C  W  F  I  Y  W  W  S  S  G  *  *  I  W  P  N  K  D  I  Y  I  G  C  N  S  T  F  S  W  C  V  S  M  :  Y  H  C  P  E  C  S  G  Y  D  H  W  T  L  T  Y  W  N  W  H  W  H  L  I  C  Y  C  A  T  L  H  I  *   : D  L  T  H  G  N  S  R  H  T  G  N  G  Q  S  A  I  H  L  H  W  N  S  C  C  T  S  G  W  I  A  F  V  W  K  S  F  M  :  E  W  Y  F  L  P  K  V  L  G  G  S  I  S :   K  G  E  Y  L  K  L  R  H  L  L  K  G  Y  M  V  K  K  K  L  L  R  L  W  V  I  W  K  L  L  P  R  V  L  Q  N  Q  M  L  G  G  L  I  Y  L </second_frame>
            <third_frame>   L  F  E  F  I  E  P  P  N  A  N  S  A  V  I  L  R  *  S  N  K  E  E  H  S  S  K  R  I  Q  L  A  T  L  *  S  L  T  F  N  T  L  L  C  I  I  S  L :   C  L  A  *  K  A  F  K  M  Q  A  S  T  F  T  V  K  G  N  T  A  F  G  L  Q  N  R  R  I  L  Q  G  V  S  D  L  R  S  R  T  L  A  G  K  S  L  R  M  T  G  S  C  F  G  V  S  M  D  S  A  S  M  G  I  E  L  G  R  A  R  R  T  V  Q  S  V  F  G  S  S  A  K  A  R  S  H  R  V  R  A  A   : G  E  D  I  E  D  A  A  P  L  K  V  Q  G  Q  S  S  G  S  V  L  P  Y  V  G  V  A  C  L  A  A  I  L  F  G  Y  H  L  G :   V  V  N  G  A  L  E  Y  L  A  K  D  L  G  I  A  E  N  T  V  I  Q   : G  W  I  V  S  T  V  L  A  G  A  F  V  G  S  F  T  G  G  A  L  A  D  K  F  G  R  T  K  T  F  I  L  D  A  I  P  L  S  V  G  A  F  L  C :   T  T  A  Q  S  V  Q  A  M  I  I  G  R  L  L  T  G  I  G  I  G  I  S  S  A  I  V  P  L  Y  I  S  E  :  I  S  P  T  E  I  R  G  T  L  G  T  V  N  Q  L  F  I  C  I  G  I  L  V  A  L  V  A  G  L  P  L  S  G  N  P  S  W :   N  G  I  F  S  R  K  S  S  V  A  L  S   : A  R  E  N  I  *  S  *  D  I  Y  *  K  A  I  W  *  R  K  S  C  *  G  Y  G  *  F  G  S  F  C  P  G  F  F  R  T  R  C  W  V  A  *  S  I   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02SLe0010E18.1" strand="+"/>
                <serials PGL_serial="11" AGS_serial="2" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="82891" stop="83152"/>
                    <exon start="84159" stop="84273"/>
                    <exon start="85982" stop="86049"/>
                    <exon start="86310" stop="86442"/>
                    <exon start="86526" stop="86625"/>
                    <exon start="86723" stop="86835"/>
                    <exon start="88123" stop="88163"/>
                    <exon start="88279" stop="88295"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>846</number_coding_nucleotides>
                  <number_encoded_amino_acids>282</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>KAFKMQASTFTVKGNTAFGLQNRRILQGVSDLRSRTLAGKSLRMTGSCFGVSMDSASMGIELGRARRTVQSVFGSSAKARSHRVRAAGEDIEDAAPLKVQGQSSGSVLPYVGVACLAAILFGYHLGVVNGALEYLAKDLGIAENTVIQGWIVSTVLAGAFVGSFTGGALADKFGRTKTFILDAIPLSVGAFLCTTAQSVQAMIIGRLLTGIGIGISSAIVPLYISEISPTEIRGTLGTVNQLFICIGILVALVAGLPLSGNPSWNGIFSRKSSVALSARENI*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="12" PGL_strand="-" PGL_start="94492" PGL_stop="92042"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="94492" e_stop="94361"/>
            <exon e_start="92892" e_stop="92832"/>
            <exon e_start="92706" e_stop="92517"/>
            <exon e_start="92322" e_stop="92042"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.993" acc_prob="0.998" e_score="1.000"/>
          <exon-intron don_prob="0.998" acc_prob="0.000" e_score="1.000"/>
          <exon-intron don_prob="0.952" acc_prob="0.989" e_score="1.000"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="94492" e_stop="94361" e_length="132"/>
          </exon>
          <intron i_serial="1" don_prob="0.993" acc_prob="0.998">
            <gDNA_intron_boundary i_start="94360" i_stop="92893" i_length="1468"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="92892" e_stop="92832" e_length="61"/>
          </exon>
          <intron i_serial="2" don_prob="0.998" acc_prob="0.000">
            <gDNA_intron_boundary i_start="92831" i_stop="92707" i_length="125"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="92706" e_stop="92517" e_length="190"/>
          </exon>
          <intron i_serial="3" don_prob="0.952" acc_prob="0.989">
            <gDNA_intron_boundary i_start="92516" i_stop="92323" i_length="194"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="92322" e_stop="92042" e_length="281"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="94492" stop="94361"/>
              <exon start="92892" stop="92832"/>
              <exon start="92706" stop="92517"/>
              <exon start="92322" stop="92146"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E541124" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="94491" stop="94361"/>
              <exon start="92892" stop="92832"/>
              <exon start="92706" stop="92517"/>
              <exon start="92322" stop="92145"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E296476" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="94462" stop="94361"/>
              <exon start="92892" stop="92832"/>
              <exon start="92706" stop="92517"/>
              <exon start="92322" stop="92042"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E347531" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="12" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>GTCGGGTCTGGAGCTGTTTCAATGGAAGAGGACGACGGGAGGAGAGAAGCTGCGATAGCATCAGTACCATCTCTACAACCCAATTTCACCAATAAAAATGGTGTCAACAATGCTCAAGTTTCCAAATTTCAA : GAGTTGCATCGAAGACGCTTAAAAATAAAAGCAAAATCTAAGGTCAAGGATAAAACGAAAG : GAACTGTTGTCTCCACTAAAAAGTATAATGGTGAAGATGTCAATGCTAAATGCAAGGCAATCATGGATGAAAAATCAATAGAAACAGCTAAAGATGTGAGAATTACTTTGTCAATAAGCAGTACAACAGACCTTTCATCCTCTCAAGAAGACAACACATTGTCAAAAAAGCGGCAGAAGTTGCATTGGGG : GCTCGACACCAAGGAGAGATGGGAAAGGAAATCCAATATGTAGAGATATCAGCATCTGAATATGGAATGCTTCTATCTTGCCCTTTTACTTATGAGGAGATACTAAGTCTCGGGCTCAGGCGTGTAGAGCAAACCAACCAATTACTGATAAATAACCCTTTTACTTGTAAATGTATTTGTTAAGTAGTACTAATATCAATTTACTACGGTTAAGTGATTTAATTAATTATTATATATATGAATTCTCAATGATAGTTATATATTTATTGATGATTTGGCGT</gDNA_template>
            <first_frame> V  G  S  G  A  V  S  M  E  E  D  D  G  R  R  E  A  A  I  A  S  V  P  S  L  Q  P  N  F  T  N  K  N  G  V  N  N  A  Q  V  S  K  F  Q  :  E  L  H  R  R  R  L  K  I  K  A  K  S  K  V  K  D  K  T  K   : G  T  V  V  S  T  K  K  Y  N  G  E  D  V  N  A  K  C  K  A  I  M  D  E  K  S  I  E  T  A  K  D  V  R  I  T  L  S  I  S  S  T  T  D  L  S  S  S  Q  E  D  N  T  L  S  K  K  R  Q  K  L  H  W  G :   L  D  T  K  E  R  W  E  R  K  S  N  M  *  R  Y  Q  H  L  N  M  E  C  F  Y  L  A  L  L  L  M  R  R  Y  *  V  S  G  S  G  V  *  S  K  P  T  N  Y  *  *  I  T  L  L  L  V  N  V  F  V  K  *  Y  *  Y  Q  F  T  T  V  K  *  F  N  *  L  L  Y  I  *  I  L  N  D  S  Y  I  F  I  D  D  L  A  </first_frame>
            <second_frame>  S  G  L  E  L  F  Q  W  K  R  T  T  G  G  E  K  L  R  *  H  Q  Y  H  L  Y  N  P  I  S  P  I  K  M  V  S  T  M  L  K  F  P  N  F  K :   S  C  I  E  D  A  *  K  *  K  Q  N  L  R  S  R  I  K  R  K  :  E  L  L  S  P  L  K  S  I  M  V  K  M  S  M  L  N  A  R  Q  S  W  M  K  N  Q  *  K  Q  L  K  M  *  E  L  L  C  Q  *  A  V  Q  Q  T  F  H  P  L  K  K  T  T  H  C  Q  K  S  G  R  S  C  I  G   : G  S  T  P  R  R  D  G  K  G  N  P  I  C  R  D  I  S  I  *  I  W  N  A  S  I  L  P  F  Y  L  *  G  D  T  K  S  R  A  Q  A  C  R  A  N  Q  P  I  T  D  K  *  P  F  Y  L  *  M  Y  L  L  S  S  T  N  I  N  L  L  R  L  S  D  L  I  N  Y  Y  I  Y  E  F  S  M  I  V  I  Y  L  L  M  I  W  R </second_frame>
            <third_frame>   R  V  W  S  C  F  N  G  R  G  R  R  E  E  R  S  C  D  S  I  S  T  I  S  T  T  Q  F  H  Q  *  K  W  C  Q  Q  C  S  S  F  Q  I  S   : R  V  A  S  K  T  L  K  N  K  S  K  I  *  G  Q  G  *  N  E  R :   N  C  C  L  H  *  K  V  *  W  *  R  C  Q  C  *  M  Q  G  N  H  G  *  K  I  N  R  N  S  *  R  C  E  N  Y  F  V  N  K  Q  Y  N  R  P  F  I  L  S  R  R  Q  H  I  V  K  K  A  A  E  V  A  L  G  :  A  R  H  Q  G  E  M  G  K  E  I  Q  Y  V  E  I  S  A  S  E  Y  G  M  L  L  S  C  P  F  T  Y  E  E  I  L  S  L  G  L  R  R  V  E  Q  T  N  Q  L  L  I  N  N  P  F  T  C  K  C  I  C  *  V  V  L  I  S  I  Y  Y  G  *  V  I  *  L  I  I  I  Y  M  N  S  Q  *  *  L  Y  I  Y  *  *  F  G   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02SLe0010E18.1" strand="-"/>
                <serials PGL_serial="12" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="94492" stop="94361"/>
                    <exon start="92892" stop="92832"/>
                    <exon start="92706" stop="92517"/>
                    <exon start="92322" stop="92280"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>423</number_coding_nucleotides>
                  <number_encoded_amino_acids>141</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>VGSGAVSMEEDDGRREAAIASVPSLQPNFTNKNGVNNAQVSKFQELHRRRLKIKAKSKVKDKTKGTVVSTKKYNGEDVNAKCKAIMDEKSIETAKDVRITLSISSTTDLSSSQEDNTLSKKRQKLHWGLDTKERWERKSNM*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="13" PGL_strand="+" PGL_start="97051" PGL_stop="99318"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="97051" e_stop="97391"/>
            <exon e_start="97978" e_stop="98283"/>
            <exon e_start="98992" e_stop="99318"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.999" acc_prob="0.776" e_score="0.988"/>
          <exon-intron don_prob="0.999" acc_prob="0.999" e_score="1.000"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.988">
            <gDNA_exon_boundary e_start="97051" e_stop="97391" e_length="341"/>
          </exon>
          <intron i_serial="1" don_prob="0.999" acc_prob="0.776">
            <gDNA_intron_boundary i_start="97392" i_stop="97977" i_length="586"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="97978" e_stop="98283" e_length="306"/>
          </exon>
          <intron i_serial="2" don_prob="0.999" acc_prob="0.999">
            <gDNA_intron_boundary i_start="98284" i_stop="98991" i_length="708"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="98992" e_stop="99318" e_length="327"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="97051" stop="97391"/>
              <exon start="97978" stop="98283"/>
              <exon start="98992" stop="99246"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E707103" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="97052" stop="97391"/>
              <exon start="97978" stop="98118"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E309459" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="97053" stop="97391"/>
              <exon start="97978" stop="98212"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E319563" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="97061" stop="97391"/>
              <exon start="97978" stop="98283"/>
              <exon start="98992" stop="99239"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E707705" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="97097" stop="97391"/>
              <exon start="97978" stop="98283"/>
              <exon start="98992" stop="99135"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E326045" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="97108" stop="97391"/>
              <exon start="97978" stop="98253"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E310397" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="97179" stop="97391"/>
              <exon start="97978" stop="98283"/>
              <exon start="98992" stop="99092"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E340155" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="97354" stop="97391"/>
              <exon start="97978" stop="98283"/>
              <exon start="98992" stop="99177"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E347565" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="98079" stop="98283"/>
              <exon start="98992" stop="99244"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E290981" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="98188" stop="98283"/>
              <exon start="98992" stop="99318"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E713906" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="13" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>CTTTGTTTTCCTCTCTATCTTCACTCCATAGTTCCTCCTTTTCCGGCGGACCATCGCCGCCGGAGTCTGGTAAAACCCGACCCGAGACGGACATATTTCTCTTTTACCTAGTATACCGTCGGAGATGGAGGATTACTTGAAGCTATTCGTGGAGGAGACATCGTTTTACAACCGTCTGGTTTTGGGTACATTCTTGCCGGAATCATGGTGGGGACCACTTCCTCATATGCTTCAAGGATGGCTCCGTAACTACATTGGCGGTGTTTTACTTTACTTCATCTCCGGTTTCCTCTGGTGCTTCTATATTTATCACTTGAAACGCAATGTCTATATTCCCAAAG : ATGCCATACCATCAAAGCAAGCAATGCTGTTGCAAATATCAGTTGCTATGAAAGCTATGCCGTGGTACTGTGCCCTTCCATCACTTTCTGAGTACATGATTGAAAACGGATGGACCAAATGTTTTGCGAGAATAAGTGATGTTGGATGGCCTACCTACATCATCAATGCGGCTATTTATCTTGTAATAGTGGAGTTTGGAATCTACTGGATGCACAAGTTATTGCATGACATAAAACCTCTGTATAAATATCTGCATGCTACACATCATATTTACAACAAGCAAAACACACTTTCCCCATTTGCTG : GATTGGCATTCCACCCATTGGATGGAATACTGCAGGCAGTGCCACACGTTGTAGCTCTTTTCTTGGTGCCAATGCATTTCACTACACACATAGTGCTCATATTCGTGGAAGCCTTATGGACGGCTAATATTCATGACTGCATACATGGTAAGGTGTGGCCTGTAATGGGTGCCGGTTATCATACCATTCACCATACAACATACCGCCATAATTATGGTCATTACACAATATGGATGGACTGGATGTTTGGAACTCTTCGTGATCCCGTTGAAGAGGATGCCAAGAAAATGTAATGTGCATGATTTGCACTCAAGGATGTTCCTTATT</gDNA_template>
            <first_frame> L  C  F  P  L  Y  L  H  S  I  V  P  P  F  P  A  D  H  R  R  R  S  L  V  K  P  D  P  R  R  T  Y  F  S  F  T  *  Y  T  V  G  D  G  G  L  L  E  A  I  R  G  G  D  I  V  L  Q  P  S  G  F  G  Y  I  L  A  G  I  M  V  G  T  T  S  S  Y  A  S  R  M  A  P  *  L  H  W  R  C  F  T  L  L  H  L  R  F  P  L  V  L  L  Y  L  S  L  E  T  Q  C  L  Y  S  Q  R :   C  H  T  I  K  A  S  N  A  V  A  N  I  S  C  Y  E  S  Y  A  V  V  L  C  P  S  I  T  F  *  V  H  D  *  K  R  M  D  Q  M  F  C  E  N  K  *  C  W  M  A  Y  L  H  H  Q  C  G  Y  L  S  C  N  S  G  V  W  N  L  L  D  A  Q  V  I  A  *  H  K  T  S  V  *  I  S  A  C  Y  T  S  Y  L  Q  Q  A  K  H  T  F  P  I  C  W :   I  G  I  P  P  I  G  W  N  T  A  G  S  A  T  R  C  S  S  F  L  G  A  N  A  F  H  Y  T  H  S  A  H  I  R  G  S  L  M  D  G  *  Y  S  *  L  H  T  W  *  G  V  A  C  N  G  C  R  L  S  Y  H  S  P  Y  N  I  P  P  *  L  W  S  L  H  N  M  D  G  L  D  V  W  N  S  S  *  S  R  *  R  G  C  Q  E  N  V  M  C  M  I  C  T  Q  G  C  S  L   </first_frame>
            <second_frame>  F  V  F  L  S  I  F  T  P  *  F  L  L  F  R  R  T  I  A  A  G  V  W  *  N  P  T  R  D  G  H  I  S  L  L  P  S  I  P  S  E  M  E  D  Y  L  K  L  F  V  E  E  T  S  F  Y  N  R  L  V  L  G  T  F  L  P  E  S  W  W  G  P  L  P  H  M  L  Q  G  W  L  R  N  Y  I  G  G  V  L  L  Y  F  I  S  G  F  L  W  C  F  Y  I  Y  H  L  K  R  N  V  Y  I  P  K   : D  A  I  P  S  K  Q  A  M  L  L  Q  I  S  V  A  M  K  A  M  P  W  Y  C  A  L  P  S  L  S  E  Y  M  I  E  N  G  W  T  K  C  F  A  R  I  S  D  V  G  W  P  T  Y  I  I  N  A  A  I  Y  L  V  I  V  E  F  G  I  Y  W  M  H  K  L  L  H  D  I  K  P  L  Y  K  Y  L  H  A  T  H  H  I  Y  N  K  Q  N  T  L  S  P  F  A   : G  L  A  F  H  P  L  D  G  I  L  Q  A  V  P  H  V  V  A  L  F  L  V  P  M  H  F  T  T  H  I  V  L  I  F  V  E  A  L  W  T  A  N  I  H  D  C  I  H  G  K  V  W  P  V  M  G  A  G  Y  H  T  I  H  H  T  T  Y  R  H  N  Y  G  H  Y  T  I  W  M  D  W  M  F  G  T  L  R  D  P  V  E  E  D  A  K  K  M  *  C  A  *  F  A  L  K  D  V  P  Y  </second_frame>
            <third_frame>   L  F  S  S  L  S  S  L  H  S  S  S  F  S  G  G  P  S  P  P  E  S  G  K  T  R  P  E  T  D  I  F  L  F  Y  L  V  Y  R  R  R  W  R  I  T  *  S  Y  S  W  R  R  H  R  F  T  T  V  W  F  W  V  H  S  C  R  N  H  G  G  D  H  F  L  I  C  F  K  D  G  S  V  T  T  L  A  V  F  Y  F  T  S  S  P  V  S  S  G  A  S  I  F  I  T  *  N  A  M  S  I  F  P  K  :  M  P  Y  H  Q  S  K  Q  C  C  C  K  Y  Q  L  L  *  K  L  C  R  G  T  V  P  F  H  H  F  L  S  T  *  L  K  T  D  G  P  N  V  L  R  E  *  V  M  L  D  G  L  P  T  S  S  M  R  L  F  I  L  *  *  W  S  L  E  S  T  G  C  T  S  Y  C  M  T  *  N  L  C  I  N  I  C  M  L  H  I  I  F  T  T  S  K  T  H  F  P  H  L  L  :  D  W  H  S  T  H  W  M  E  Y  C  R  Q  C  H  T  L  *  L  F  S  W  C  Q  C  I  S  L  H  T  *  C  S  Y  S  W  K  P  Y  G  R  L  I  F  M  T  A  Y  M  V  R  C  G  L  *  W  V  P  V  I  I  P  F  T  I  Q  H  T  A  I  I  M  V  I  T  Q  Y  G  W  T  G  C  L  E  L  F  V  I  P  L  K  R  M  P  R  K  C  N  V  H  D  L  H  S  R  M  F  L  I </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02SLe0010E18.1" strand="+"/>
                <serials PGL_serial="13" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="97124" stop="97391"/>
                    <exon start="97978" stop="98283"/>
                    <exon start="98992" stop="99284"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>864</number_coding_nucleotides>
                  <number_encoded_amino_acids>288</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>NPTRDGHISLLPSIPSEMEDYLKLFVEETSFYNRLVLGTFLPESWWGPLPHMLQGWLRNYIGGVLLYFISGFLWCFYIYHLKRNVYIPKDAIPSKQAMLLQISVAMKAMPWYCALPSLSEYMIENGWTKCFARISDVGWPTYIINAAIYLVIVEFGIYWMHKLLHDIKPLYKYLHATHHIYNKQNTLSPFAGLAFHPLDGILQAVPHVVALFLVPMHFTTHIVLIFVEALWTANIHDCIHGKVWPVMGAGYHTIHHTTYRHNYGHYTIWMDWMFGTLRDPVEEDAKKM*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
  </PGL_module>
</GTH_output>
<!--
$ general statistics:
$ 84 chains have been computed
$ 
$ memory statistics:
$ 355136 bytes spliced alignments in total
$ 50 spliced alignments have been stored
$ 7102 bytes was the average size of a spliced alignment
$ 22136 bytes predicted gene locations in total
$ 13 predicted gene locations have been stored
$ 1702 bytes was the average size of a predicted gene location
$ 2 megabytes was the average size of the backtrace matrix
$ 99 backtrace matrices have been allocated
$ 
$ date finished: 2009-12-01 10:35:52
-->
