<?xml version="1.0" encoding="ISO-8859-1"?>
<GTH_output xmlns="http://www.genomethreader.org/GTH_output/" GTH_XML_version="1.1">
  <header xmlns="http://www.genomethreader.org/GTH_output/header/">
    <source program="GenomeThreader" version="0.9.54" build_date="2006-07-28 11:55:15" run_date="2009-12-01 10:38:10"/>
    <gDNA_template_files>
      <temp_name>/tmp/bac-submission-temp-C02SLe0011K05-p7ZAm/GenomeThreader_SGN_markers/un_xed_seqs</temp_name>
    </gDNA_template_files>
    <reference_files>
      <file ref_name="/tmp/bac-submission-temp-C02SLe0011K05-p7ZAm/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_markers" type="ESTcDNA"/>
    </reference_files>
    <splice_site_parameters parameter_type="Bayesian" species="arabidopsis"/>
    <parameters>
      <parameter name="bssmfile" value="arabidopsis"/>
      <parameter name="scorematrixfile" value="BLOSUM62"/>
      <parameter name="searchmode" value="forward=True,reverse=True)"/>
      <parameter name="translationtable" value="1"/>
      <parameter name="frompos" value="0"/>
      <parameter name="topos" value="0"/>
      <parameter name="width" value="0"/>
      <parameter name="verbose" value="False"/>
      <parameter name="skipalignmentout" value="False"/>
      <parameter name="showintronmaxlen" value="120"/>
      <parameter name="minorflen" value="64"/>
      <parameter name="showseqnums" value="False"/>
      <parameter name="gs2out" value="False"/>
      <parameter name="maskpolyatails" value="False"/>
      <parameter name="noautoindex" value="False"/>
      <parameter name="minmatchlen" value="20"/>
      <parameter name="seedlength" value="16"/>
      <parameter name="exdrop" value="2"/>
      <parameter name="online" value="False"/>
      <parameter name="inverse" value="False"/>
      <parameter name="exact" value="False"/>
      <parameter name="chainwf" value="0.500000"/>
      <parameter name="gcmaxgapwidth" value="1000000"/>
      <parameter name="gcmincoverage" value="50"/>
      <parameter name="introncutout" value="False"/>
      <parameter name="autointroncutout" value="0"/>
      <parameter name="icinitialdelta" value="50"/>
      <parameter name="iciterations" value="2"/>
      <parameter name="icdeltaincrease" value="50"/>
      <parameter name="icminremintronlen" value="10"/>
      <parameter name="nou12intronmodel" value="False"/>
      <parameter name="u12donorprob" value="0.990000"/>
      <parameter name="u12donorprob1mism" value="0.900000"/>
      <parameter name="probies" value="0.500000"/>
      <parameter name="probdelgen" value="0.030000"/>
      <parameter name="identityweight" value="2.000000"/>
      <parameter name="mismatchweight" value="-2.000000"/>
      <parameter name="undetcharweight" value="0.000000"/>
      <parameter name="deletionweight" value="-4.000000"/>
      <parameter name="dpminexonlen" value="5"/>
      <parameter name="dpminintronlen" value="50"/>
      <parameter name="shortexonpenal" value="100"/>
      <parameter name="shortintronpenal" value="100"/>
      <parameter name="wzerotransition" value="80"/>
      <parameter name="wdecreasedoutput" value="80"/>
      <parameter name="leadcutoffsmode" value="RELAXED"/>
      <parameter name="termcutoffsmode" value="STRICT"/>
      <parameter name="cutoffsminexonlen" value="5"/>
      <parameter name="scoreminexonlen" value="50"/>
      <parameter name="minaveragessp" value="0.500000"/>
      <parameter name="minalignmentscore" value="0.900000"/>
      <parameter name="maxalignmentscore" value="1.000000"/>
      <parameter name="mincoverage" value="0.900000"/>
      <parameter name="maxcoverage" value="100.000000"/>
      <parameter name="intermediate" value="False"/>
      <parameter name="sortags" value="False"/>
      <parameter name="sortagswf" value="1.000000"/>
      <parameter name="first" value="0"/>
      <parameter name="exondistri" value="False"/>
      <parameter name="introndistri" value="False"/>
      <parameter name="refseqcovdistri" value="False"/>
    </parameters>
    <overall_reference_type>ESTcDNA</overall_reference_type>
  </header>
  <alignment_module>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0011K05-p7ZAm/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_markers" ref_id="C2_At4g22930" ref_strand="+" ref_description="C2_At4g22930">
      <seq>cacgacaaattctcaagatggagtgactgatcttttcgggaagtgtttaccagttctacaagaaatggttgagcataatatgcctctgctggttcatggagaggttactaatcctgaggttgacatgtttgatagagaaaaggtattcattgaaacggttctaagaccgttggtgcagaaatttccacaattgaaggtcgtgatggagcatgttaccaccattgatgctgttaagtttgttgaatcttgcactgaaggatttgttgcagcaactgtcaccccacaacatcttgttttgaacaggaattctctcttccaagggggcttacaaccgcataattactgccttccagtcctcaaaagagagatccacagggaggcgcttgtgtcagctgtaacaagtggaagtaaaagattttttcttgggactgatagtgctcctcatgatagacgaagaaaagagtgttcttgtggatgtgctggtatttacaatgcacctgtagccttgtcagtatatgcgaaggtgtttgaaaaggaaaatgcactcgacaagcttgaagcatttactagcttcaatggaccagatttttatgggcttcctaggaacaactcaaagattaagttgagtaagacgccatggaaggtacccgaatccttttcttatgcatcaggagatattattcccatgtttgctggtgaaatgctcgactggttgccggctcctctctgagaatcatttgtcattcttgtactgtaatattgtgattcaaccaaagatatagactgtaggtgtatcatcttttctttcatgttgattagatattatcacgatgataatatcctttcagctaataaattatgnagacaataagctttgcacgct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0011K05-p7ZAm/GenomeThreader_SGN_markers/un_xed_seqs" temp_id="C02SLe0011K05.1" temp_strand="-" temp_description="C02SLe0011K05.1  AC215445.1 htgs_phase:3 submitted_to_sgn_as:C02SLe0011K05 sequenced_by:kribb upload_account_name:korea">
        <position start="49833" stop="43508"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="49533" g_stop="49443" g_length="91"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="91" r_length="91" r_score="0.978"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="49442" i_stop="49078" i_length="365">
            <donor d_prob="0.252" d_score="0.98"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="49077" g_stop="48912" g_length="166"/>
          <reference_exon_boundary r_type="cDNA" r_start="92" r_stop="257" r_length="166" r_score="0.970"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="48911" i_stop="48796" i_length="116">
            <donor d_prob="0.998" d_score="0.94"/>
            <acceptor a_prob="0.860" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="48795" g_stop="48679" g_length="117"/>
          <reference_exon_boundary r_type="cDNA" r_start="258" r_stop="374" r_length="117" r_score="0.983"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="48678" i_stop="44414" i_length="4265">
            <donor d_prob="0.980" d_score="1.00"/>
            <acceptor a_prob="0.959" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="44413" g_stop="44253" g_length="161"/>
          <reference_exon_boundary r_type="cDNA" r_start="375" r_stop="535" r_length="161" r_score="0.969"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="44252" i_stop="44112" i_length="141">
            <donor d_prob="0.827" d_score="0.94"/>
            <acceptor a_prob="0.996" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="44111" g_stop="43775" g_length="337"/>
          <reference_exon_boundary r_type="cDNA" r_start="536" r_stop="847" r_length="312" r_score="0.840"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLe0011K05.1" gen_strand="-" ref_id="C2_At4g22930" ref_strand="+">
        <total_alignment_score>0.922</total_alignment_score>
        <cumulative_length_of_scored_exons>872</cumulative_length_of_scored_exons>
        <coverage percentage="0.988" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0011K05.1" gen_strand="-"/>
        <rDNA rDNA_id="C2_At4g22930" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="49533" e_stop="49443"/>
          <exon e_start="49077" e_stop="48912"/>
          <exon e_start="48795" e_stop="48679"/>
          <exon e_start="44413" e_stop="44253"/>
          <exon e_start="44111" e_stop="43775"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CACGACAAATTCTCAAGATGGAGTGACTGATCTTTTTGGGAAGTGTTTACCAGTTCTACAAGAAATGGTTGAGCATAATATGCCTTTGCTGGTAATTTGATGCTAAACTTGGTGCTAAGCTTTCTTCCTGTTCCACTAGAACATTGCATAATGTGCATGCTAACCTTACCACCAAAAAATTGCTTTTTATCACTGTAGAAAGATGCAGATTCAAAGTTGTACCTTGTATCTGTTGAAGCTATACATGATTAATGTTATTTCTTGCCTACGCTATAGCTTTTCTAGTTTCAGTTTATCTTGGATTGCTATAAAATAGATTCAGCGTTTAACTGTAATGACTCAACTTTAATCATGTTTTTTCTTCCCCCAATTGCTCTGTCAAAGCTTGTGATTTTTGTCACTTCCCTTGAAAAAATTTCATTTTATAGGATTTTTATGTATTACATTTGACTGCAGGTTCATGGAGAGGTTACTAATCCTGAGGTTGACATGTTTGATAGAGAAAAGGTATTCATTGAAACGGTTCTAAGACCTTTGGTGCAGAAATTTCCACGATTGAAGGTCGTGATGGAGCATGTCACCACCATGGATGCTGTTAAGTTTGTTGAATCTTGCAGTGAAGGTAATCTTTTCAACTTTATCCACCTTTTTGAACTTAAAGTCTTCTTGTCAGATGAAAGAACTTCATTGACCTTCCTTTTTCAAATGCTAATTTAACCTTTCTATCATTCTTTAAAGGATTTGTTGCAGCGACTGTCACCCCACAACATCTTGTTTTAAACAGGAATTCTCTCTTCCAAGGGGGCTTACAACCGCATAATTACTGCCTTCCAGTCCTCAAAAGAGAGATCCACAGTAATATTCTTTATCCTTTCATATTGATGCTCCGATTCTCTTCTATCGCTTGGTGTTTGTCTATCGGTTGCAAGAACAATAATGAAGTAACATTACTTTTAATTTTGAAAAACCGACTAGGATTCTTTGGTTAACCACCTGTAGTGACTACAAGGGCATGTAGACCTTGTTTGGTTCTACAAAGGGGACAAGAACTTCATTTTTCTCATGCATAATGTATTTACCATTAACCTCCACTTGTTTGGTTCAACTCAAGTAAAGTGGAAGAGGTTGATTTCCTTATTTCCAATCTTAGATGGTTTTGAAAAGTTGAGGAATTGCATACTTACACTTGCATTTTAACAAACAAGGTTAATTATATTCCTTCCAGTGTGATAGGTAACTTGAGCAAATTAAGTCTACACTGCTAGCATTGTATGCTTCTATTTCATACATGAACCTGAATAGAATTACATTCAGTATCCTAATCAACATAAGCTGGACAATATACTAACTCTATCAACAAAAGGAAACCATATCGAGTTCAAGGCCAGATGCTTAGTTCTACTTTTTTGTTGGGAAGTTTATTTTTGTCCATTCTTGGAGCTGACTCTTCCTACTTTTGTAATTATGCATCTGCTAGATGCTTTGTTTATCAATACACCATTTATTTCATCAAAAATAAAATAAAATATCAAGTTGAAGCAACAAGCTTTACATTCTAGTATGCAGGGATCCCGATGGGTTTGTTGATGTTACAGTTCTTACCTTCTCCAGCAAGCCTTTTATTGCACTCTCCAACTCTAATTTCTCCTCAGTAGTAATCTTACCGTAGCATTTTTTCCATGATTGATTTCATCCCCTTCAGCTTCTGCTTGATTAGTTGTACCTGTGACTTCCCCTTACCTGCTTTCAGCAAGGAGAGTGGAGTGACAGAGTTGAAGGGATAAGAGCTTAAAGTTAAATTTACAGCACCAAAAGGACTTTGATGTACTTATTCTCTGAAGGCATTTTCAGCATCTGAACAGTGCTTGAATCAGATTACACTTAAATGTTGCCATCCTCTGGGATTATGATGGCAGACTTTTTGTCACCCAGCCAATCCTCACAGAACGACTTCAACATTGAAATTTTGCAACTTTTTAAGTATACACTTCAATCTTCCTACCCCATCTTCTACACAAATTACCTACCCCGTGTGAAGCCTGTTGAAGAATTTCGCATTCCTTTCGCAGATTCTCCTCATCAATATTGAGTCTGCTAGTGATTGACTGCTTTACTCTACTATCGTGAACCATCTATCTTCATTGTTGCTAATATCATATAACTCGAATGACTCATCTCCTGAAACAAAAAAAGTTCTCTTCTTCATAAGGAGTGAAAGAAACAAAAGAGAAATTGCACATTTTTCAAGAGAGAGCACTGTTTTAATATAAGTTCTTAATCAAACTTTTCAGCAGAATGGTGTTGCATGATTTAACTGTAAATAGACATCTTTCTTGCTCCTCCAATAAATGTTGTCCTTCTTGTCTGTGCGTAAGGAGTAAGTCCCAAGATAAAGAGACTGCAGTTTCTATTAACTACCCAACCATTGCAATGCCTTCTAAAGATGATGTTCAAGCCATTTTTGAGTAATAATCTGTTACGCATTCTGATTGGCTGCCAGAGTGGATACACACTTGAGAGGGGTACGGCCATTCCAAAAAGCTGATTTTCTGCCATTTCCCAACTTGAAAGATGTTGTTTCCTAGGAATTCGTCTAAAGAAAGTCCAGATGCTTTTCCCGACAGAGAAACCATACAAGAGCTAGTAAGCTTTGTTATCCACAGGTGTTGCATACCATATTTGGTCTCGATGACTTACTCCGTTTTGCATTCTCACCTTTTGTGAATCTCCATGACCATTTGTTTAAGAGGCTATCATTGTGTGCTTTCAGATTCCGTACTCCCAGGCCTCCAGATTTTTATCTTTTTGGACAGCTTCCCACTTAGCACTGATGAATCCCCTAATGATTTTTATCAAAATCATTAAGTTAAGGTAGATACACATCTTGTCATATGATCAAATGGTTTCGCCAAAAATCAATAATCAGACAACAAAATGTGCGAACTCGATATTTTACACGACTCTCTTTACCAATTCTGCCCCGAATTACACTTAAAACGACTCAACAGCTTAACGTTGGCTTGCCACGCCTTACTTGACTGTAAAACTCTCACTCTTACCGAACTTGGCCGTAACCTGCCAACCAAAGCGAGAACAAAACATAACATCAAACGAATCGACCGATTGTTAGGTAATCGTCACCTCCACAAAGAGCGACTCGCTGTATACCGTTGGCATGCTAGCTTTATCTGTTCGGGCAATACGATGCCCATTGTACTTGTTGACTGGTCTGATATCCGTGAGCAAAAACGGCTTATGGTATTGCGAGCTTCAGTCGCACTACACGGTCGTTCTGTTACTCTTTATGAGAAAGCGTTCCCGCTTTCAGAGCAATGTTCAAAGAAAGCTCATGACCAATTTCTAGCCGACCTTGCGAGCATTCTACCGAGTAACACCACACCGCTCATTGTCAGTGATGCTGGCTTTAAAGTGCCATGGTATAAATCCGTTGAGAAGCTGGGTTGGTACTGGTTAAGTCGAGTAAGAGGAAAAGTACAATATGCAGACCTAGGAGCGGAAAACTGGAAACCTATCAGCAACTTACATGATATGTCATCTAGTCACTCAAAGACTTTAGGCTATAAGAGGCTGACTAAAAGCAATCCAATCTCATGCCAAATTCTATTGTATAAATCTCGCTCTAAAGGCCGAAAAAATCAGCGCTCGACACGGACTCATTGTCACCACCCGTCACCTAAAATCTACTCAGCGTCGGCAAAGGAGCCATGGATTCTAGCAACTAACTTACCTGTTGAAATTCGAACACCCAAACAACTTGTTAATATCTATTCGAAGCGAATGCAGATTGAAGAAACCTTCCGAGACTTGAAAAGTCCTGCCTACGGACTAGGCCTACGCCATAGCCGAACGAGCAGCTCAGAGCGTTTTGATATCATGCTGCTAATCGCCCTGATGCTTCAACTAACATGTTGGCTTGCGGGCGTTCATGCTCAGAAACAAGGTTGGGACAAGCACTTCCAGGCTAACACAGTCAGAAATCGAAACGTACTCTCAACAGTTCGCTTAGGCATGGAAGTTTTGCGGCATTCTGGCTACACAATAACAAGGGAAGACTCACTCGTGGCTGCAACCCTGCTTACTCAAAATCTATTCACACATGGTTACGTTTTGGGGAAATTATGAGGGGATCTCTCAGCACTTAGCATGATTAAAAGCTTTCTTGTCCCTGTTTTCATTTCAGATTCGACGAATCTTATCAATTTCTTGGCCAGATATGTAGGAATAAGGAATAAAGAGATTGTGTAAGTGGGAAGTGAGTCCAAAACACTATTTGTGAAAACTAATCTGCCTTTGCTTATATTTCGTTAAATCAAATCTAAAAGCCTATAATCTTTTCGGAATATGGCATTTTGATTTTGTTGTATGGATTACTGTCATAACAAAGAAGAAATGAATTAAACAGCTATTGAGCCATCTACCCTGAATTTTGAAAGTTGGGTAGAAGCTATATTTGCCTGTAATTGACCCTCTTTTTGTGTGGAATAATTTGTTGAAAGTTTGTTCTTCTACCTGATATTTTCTTACCTCTTTGTAAGAGTTATGACTACCCTGAAATTTTGAAAGTTAGGTAAAAACTGTAGAGCTATATTTGCCTGTAATTGACCCTCTTTTTGTGTAGAATAATTTGTTGAAAGTTTCTTCTTTACCTGATTTCTTTTACCTCTGTGTAAGAGATGAAAGTTTTAGTCTTACTGATGCTAATGTGTCACGAATCACTACTTGATCAGGCTTTCTTTGATTTGCTAGTTCCATCCATTGCCTTTTATTTTCCTAGACATGTGAACTTGTTGAAAATTTGATGCAAACGGTGCTGTGAATGTGCTAAAAAAAGGAAATGAATGTATGGCATGATTGTCCTTGTTGAAACAAGGTGCTCTTTTTTCTTATAAGAATTTGCCAATTTGGGGAGCATGTTTAATGAGACTTGGAAAAGTACCAAGTGCGTGAGAAAAAACTCATCTTTATTAATATATTCATTATTCGCATAATTACAAGATCTATTGCACTAATCTTGTCCCCTTACTCCTACTACTTTTCTCTTTTCTCTTGTTCACTTGGTATAAATTTTAATCTAAGCAAGATTGCTTTGAATAACACAGGGGAGGCACTTGTGTCAGCTGTAACAAGTGGAAGTAAAAGATTTTTTCTTGGGACTGATAGTGCTCCTCATGATAGACGAAGAAAAGAATGTTCTTGTGGATGTGCTGGTATTTACAATGCTCCTGTAGCCTTATCAGTATATGCAAAGGTGTTTGAAAAGGTAATTGCAATAGATATCTACAGCGCTTCTCATGTTGAACTCATCCATGTTATAATGTTTCTAATTACTTGGGAAAGGTTCATTAGTTTTAGCAGCTATCGCTACAAGTCAATGACTTAGATTTGGTTGTCTGCATTTTAGGAAAATGCACTTGACAAGCTCGAAGCATTTACCAGCTTCAATGGACCAGACTTTTATGGGCTTCCGAGGAACAACTCAAAGATTAAGTTGAGTAAGACACCATGGAAGGTACCCGAATCCTTTTCATATGCATCAGGAGATATAATTCCCATGTTTGCTGGTGAAATGCTCGACTGGTTGCCGGCTCCTCTCTGAGAAAGGAAAAAAAAAAGAGATTCCCATTCTCATTTGTTGTTCTTGTACTGTAATACTGTGATTTAACTAAAGATATAGAGTGCAGGTGTGTCATCTTTCCTTTCATGTT--TTAGATATTATCGCGATGATAATTATTGAAACA</genome_strand>
        <mrna_strand>CACGACAAATTCTCAAGATGGAGTGACTGATCTTTTCGGGAAGTGTTTACCAGTTCTACAAGAAATGGTTGAGCATAATATGCCTCTGCTG.............................................................................................................................................................................................................................................................................................................................................................................GTTCATGGAGAGGTTACTAATCCTGAGGTTGACATGTTTGATAGAGAAAAGGTATTCATTGAAACGGTTCTAAGACCGTTGGTGCAGAAATTTCCACAATTGAAGGTCGTGATGGAGCATGTTACCACCATTGATGCTGTTAAGTTTGTTGAATCTTGCACTGAAG....................................................................................................................GATTTGTTGCAGCAACTGTCACCCCACAACATCTTGTTTTGAACAGGAATTCTCTCTTCCAAGGGGGCTTACAACCGCATAATTACTGCCTTCCAGTCCTCAAAAGAGAGATCCACA.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGGAGGCGCTTGTGTCAGCTGTAACAAGTGGAAGTAAAAGATTTTTTCTTGGGACTGATAGTGCTCCTCATGATAGACGAAGAAAAGAGTGTTCTTGTGGATGTGCTGGTATTTACAATGCACCTGTAGCCTTGTCAGTATATGCGAAGGTGTTTGAAAAG.............................................................................................................................................GAAAATGCACTCGACAAGCTTGAAGCATTTACTAGCTTCAATGGACCAGATTTTTATGGGCTTCCTAGGAACAACTCAAAGATTAAGTTGAGTAAGACGCCATGGAAGGTACCCGAATCCTTTTCTTATGCATCAGGAGATATTATTCCCATGTTTGCTGGTGAAATGCTCGACTGGTTGCCGGCTCCTCTCT------------------GAGA-----A---TCATTTGTCATTCTTGTACTGTAATATTGTGATTCAACCAAAGATATAGACTGTAGGTGTATCATCTTTTCTTTCATGTTGATTAGATATTATCACGATGATAA-TATCCTTTCA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0011K05-p7ZAm/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_markers" ref_id="T0493" ref_strand="+" ref_description="T0493">
      <seq>cagggttcatggagaggttactaatcctgaggttgacatgtttgatagagaaaaggtattcattgaaacggttctaagacctttggtgcagaaatttccacgattgaaggtcgtgatggagcatgtcaccaccatggatgctgttaagtttgttgaatcttgcagtgaaggatttgttgcagcgactgtcaccccacaacatcttgttttaaacaggaattctctcttccaagggggcttacaaccgcataattactgccttccagtcctcaaaagagagatccacagggaggcacttgtgtcagctgtaacaagtggaagtaaaagattttttcttgggactgatagtgctcctcatgatagacgaagaaaagaatgttcttgtggatgtgctggtatttacaatgctcctgtagccttatcagtatatgcaaaggtgtttgaaaaggaaaatgcacttgacaagctcgaagcatttaccagcttcaatggaccagacttttatgggcttccgaggaacaactcaaagattaagttgag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0011K05-p7ZAm/GenomeThreader_SGN_markers/un_xed_seqs" temp_id="C02SLe0011K05.1" temp_strand="-" temp_description="C02SLe0011K05.1  AC215445.1 htgs_phase:3 submitted_to_sgn_as:C02SLe0011K05 sequenced_by:kribb upload_account_name:korea">
        <position start="49380" stop="43720"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="49077" g_stop="48912" g_length="166"/>
          <reference_exon_boundary r_type="cDNA" r_start="5" r_stop="170" r_length="166" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="48911" i_stop="48796" i_length="116">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.860" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="48795" g_stop="48679" g_length="117"/>
          <reference_exon_boundary r_type="cDNA" r_start="171" r_stop="287" r_length="117" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="48678" i_stop="44414" i_length="4265">
            <donor d_prob="0.980" d_score="1.00"/>
            <acceptor a_prob="0.959" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="44413" g_stop="44253" g_length="161"/>
          <reference_exon_boundary r_type="cDNA" r_start="288" r_stop="448" r_length="161" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="44252" i_stop="44112" i_length="141">
            <donor d_prob="0.827" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="44111" g_stop="44020" g_length="92"/>
          <reference_exon_boundary r_type="cDNA" r_start="449" r_stop="540" r_length="92" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLe0011K05.1" gen_strand="-" ref_id="T0493" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>536</cumulative_length_of_scored_exons>
        <coverage percentage="0.993" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0011K05.1" gen_strand="-"/>
        <rDNA rDNA_id="T0493" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="49077" e_stop="48912"/>
          <exon e_start="48795" e_stop="48679"/>
          <exon e_start="44413" e_stop="44253"/>
          <exon e_start="44111" e_stop="44020"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTTCATGGAGAGGTTACTAATCCTGAGGTTGACATGTTTGATAGAGAAAAGGTATTCATTGAAACGGTTCTAAGACCTTTGGTGCAGAAATTTCCACGATTGAAGGTCGTGATGGAGCATGTCACCACCATGGATGCTGTTAAGTTTGTTGAATCTTGCAGTGAAGGTAATCTTTTCAACTTTATCCACCTTTTTGAACTTAAAGTCTTCTTGTCAGATGAAAGAACTTCATTGACCTTCCTTTTTCAAATGCTAATTTAACCTTTCTATCATTCTTTAAAGGATTTGTTGCAGCGACTGTCACCCCACAACATCTTGTTTTAAACAGGAATTCTCTCTTCCAAGGGGGCTTACAACCGCATAATTACTGCCTTCCAGTCCTCAAAAGAGAGATCCACAGTAATATTCTTTATCCTTTCATATTGATGCTCCGATTCTCTTCTATCGCTTGGTGTTTGTCTATCGGTTGCAAGAACAATAATGAAGTAACATTACTTTTAATTTTGAAAAACCGACTAGGATTCTTTGGTTAACCACCTGTAGTGACTACAAGGGCATGTAGACCTTGTTTGGTTCTACAAAGGGGACAAGAACTTCATTTTTCTCATGCATAATGTATTTACCATTAACCTCCACTTGTTTGGTTCAACTCAAGTAAAGTGGAAGAGGTTGATTTCCTTATTTCCAATCTTAGATGGTTTTGAAAAGTTGAGGAATTGCATACTTACACTTGCATTTTAACAAACAAGGTTAATTATATTCCTTCCAGTGTGATAGGTAACTTGAGCAAATTAAGTCTACACTGCTAGCATTGTATGCTTCTATTTCATACATGAACCTGAATAGAATTACATTCAGTATCCTAATCAACATAAGCTGGACAATATACTAACTCTATCAACAAAAGGAAACCATATCGAGTTCAAGGCCAGATGCTTAGTTCTACTTTTTTGTTGGGAAGTTTATTTTTGTCCATTCTTGGAGCTGACTCTTCCTACTTTTGTAATTATGCATCTGCTAGATGCTTTGTTTATCAATACACCATTTATTTCATCAAAAATAAAATAAAATATCAAGTTGAAGCAACAAGCTTTACATTCTAGTATGCAGGGATCCCGATGGGTTTGTTGATGTTACAGTTCTTACCTTCTCCAGCAAGCCTTTTATTGCACTCTCCAACTCTAATTTCTCCTCAGTAGTAATCTTACCGTAGCATTTTTTCCATGATTGATTTCATCCCCTTCAGCTTCTGCTTGATTAGTTGTACCTGTGACTTCCCCTTACCTGCTTTCAGCAAGGAGAGTGGAGTGACAGAGTTGAAGGGATAAGAGCTTAAAGTTAAATTTACAGCACCAAAAGGACTTTGATGTACTTATTCTCTGAAGGCATTTTCAGCATCTGAACAGTGCTTGAATCAGATTACACTTAAATGTTGCCATCCTCTGGGATTATGATGGCAGACTTTTTGTCACCCAGCCAATCCTCACAGAACGACTTCAACATTGAAATTTTGCAACTTTTTAAGTATACACTTCAATCTTCCTACCCCATCTTCTACACAAATTACCTACCCCGTGTGAAGCCTGTTGAAGAATTTCGCATTCCTTTCGCAGATTCTCCTCATCAATATTGAGTCTGCTAGTGATTGACTGCTTTACTCTACTATCGTGAACCATCTATCTTCATTGTTGCTAATATCATATAACTCGAATGACTCATCTCCTGAAACAAAAAAAGTTCTCTTCTTCATAAGGAGTGAAAGAAACAAAAGAGAAATTGCACATTTTTCAAGAGAGAGCACTGTTTTAATATAAGTTCTTAATCAAACTTTTCAGCAGAATGGTGTTGCATGATTTAACTGTAAATAGACATCTTTCTTGCTCCTCCAATAAATGTTGTCCTTCTTGTCTGTGCGTAAGGAGTAAGTCCCAAGATAAAGAGACTGCAGTTTCTATTAACTACCCAACCATTGCAATGCCTTCTAAAGATGATGTTCAAGCCATTTTTGAGTAATAATCTGTTACGCATTCTGATTGGCTGCCAGAGTGGATACACACTTGAGAGGGGTACGGCCATTCCAAAAAGCTGATTTTCTGCCATTTCCCAACTTGAAAGATGTTGTTTCCTAGGAATTCGTCTAAAGAAAGTCCAGATGCTTTTCCCGACAGAGAAACCATACAAGAGCTAGTAAGCTTTGTTATCCACAGGTGTTGCATACCATATTTGGTCTCGATGACTTACTCCGTTTTGCATTCTCACCTTTTGTGAATCTCCATGACCATTTGTTTAAGAGGCTATCATTGTGTGCTTTCAGATTCCGTACTCCCAGGCCTCCAGATTTTTATCTTTTTGGACAGCTTCCCACTTAGCACTGATGAATCCCCTAATGATTTTTATCAAAATCATTAAGTTAAGGTAGATACACATCTTGTCATATGATCAAATGGTTTCGCCAAAAATCAATAATCAGACAACAAAATGTGCGAACTCGATATTTTACACGACTCTCTTTACCAATTCTGCCCCGAATTACACTTAAAACGACTCAACAGCTTAACGTTGGCTTGCCACGCCTTACTTGACTGTAAAACTCTCACTCTTACCGAACTTGGCCGTAACCTGCCAACCAAAGCGAGAACAAAACATAACATCAAACGAATCGACCGATTGTTAGGTAATCGTCACCTCCACAAAGAGCGACTCGCTGTATACCGTTGGCATGCTAGCTTTATCTGTTCGGGCAATACGATGCCCATTGTACTTGTTGACTGGTCTGATATCCGTGAGCAAAAACGGCTTATGGTATTGCGAGCTTCAGTCGCACTACACGGTCGTTCTGTTACTCTTTATGAGAAAGCGTTCCCGCTTTCAGAGCAATGTTCAAAGAAAGCTCATGACCAATTTCTAGCCGACCTTGCGAGCATTCTACCGAGTAACACCACACCGCTCATTGTCAGTGATGCTGGCTTTAAAGTGCCATGGTATAAATCCGTTGAGAAGCTGGGTTGGTACTGGTTAAGTCGAGTAAGAGGAAAAGTACAATATGCAGACCTAGGAGCGGAAAACTGGAAACCTATCAGCAACTTACATGATATGTCATCTAGTCACTCAAAGACTTTAGGCTATAAGAGGCTGACTAAAAGCAATCCAATCTCATGCCAAATTCTATTGTATAAATCTCGCTCTAAAGGCCGAAAAAATCAGCGCTCGACACGGACTCATTGTCACCACCCGTCACCTAAAATCTACTCAGCGTCGGCAAAGGAGCCATGGATTCTAGCAACTAACTTACCTGTTGAAATTCGAACACCCAAACAACTTGTTAATATCTATTCGAAGCGAATGCAGATTGAAGAAACCTTCCGAGACTTGAAAAGTCCTGCCTACGGACTAGGCCTACGCCATAGCCGAACGAGCAGCTCAGAGCGTTTTGATATCATGCTGCTAATCGCCCTGATGCTTCAACTAACATGTTGGCTTGCGGGCGTTCATGCTCAGAAACAAGGTTGGGACAAGCACTTCCAGGCTAACACAGTCAGAAATCGAAACGTACTCTCAACAGTTCGCTTAGGCATGGAAGTTTTGCGGCATTCTGGCTACACAATAACAAGGGAAGACTCACTCGTGGCTGCAACCCTGCTTACTCAAAATCTATTCACACATGGTTACGTTTTGGGGAAATTATGAGGGGATCTCTCAGCACTTAGCATGATTAAAAGCTTTCTTGTCCCTGTTTTCATTTCAGATTCGACGAATCTTATCAATTTCTTGGCCAGATATGTAGGAATAAGGAATAAAGAGATTGTGTAAGTGGGAAGTGAGTCCAAAACACTATTTGTGAAAACTAATCTGCCTTTGCTTATATTTCGTTAAATCAAATCTAAAAGCCTATAATCTTTTCGGAATATGGCATTTTGATTTTGTTGTATGGATTACTGTCATAACAAAGAAGAAATGAATTAAACAGCTATTGAGCCATCTACCCTGAATTTTGAAAGTTGGGTAGAAGCTATATTTGCCTGTAATTGACCCTCTTTTTGTGTGGAATAATTTGTTGAAAGTTTGTTCTTCTACCTGATATTTTCTTACCTCTTTGTAAGAGTTATGACTACCCTGAAATTTTGAAAGTTAGGTAAAAACTGTAGAGCTATATTTGCCTGTAATTGACCCTCTTTTTGTGTAGAATAATTTGTTGAAAGTTTCTTCTTTACCTGATTTCTTTTACCTCTGTGTAAGAGATGAAAGTTTTAGTCTTACTGATGCTAATGTGTCACGAATCACTACTTGATCAGGCTTTCTTTGATTTGCTAGTTCCATCCATTGCCTTTTATTTTCCTAGACATGTGAACTTGTTGAAAATTTGATGCAAACGGTGCTGTGAATGTGCTAAAAAAAGGAAATGAATGTATGGCATGATTGTCCTTGTTGAAACAAGGTGCTCTTTTTTCTTATAAGAATTTGCCAATTTGGGGAGCATGTTTAATGAGACTTGGAAAAGTACCAAGTGCGTGAGAAAAAACTCATCTTTATTAATATATTCATTATTCGCATAATTACAAGATCTATTGCACTAATCTTGTCCCCTTACTCCTACTACTTTTCTCTTTTCTCTTGTTCACTTGGTATAAATTTTAATCTAAGCAAGATTGCTTTGAATAACACAGGGGAGGCACTTGTGTCAGCTGTAACAAGTGGAAGTAAAAGATTTTTTCTTGGGACTGATAGTGCTCCTCATGATAGACGAAGAAAAGAATGTTCTTGTGGATGTGCTGGTATTTACAATGCTCCTGTAGCCTTATCAGTATATGCAAAGGTGTTTGAAAAGGTAATTGCAATAGATATCTACAGCGCTTCTCATGTTGAACTCATCCATGTTATAATGTTTCTAATTACTTGGGAAAGGTTCATTAGTTTTAGCAGCTATCGCTACAAGTCAATGACTTAGATTTGGTTGTCTGCATTTTAGGAAAATGCACTTGACAAGCTCGAAGCATTTACCAGCTTCAATGGACCAGACTTTTATGGGCTTCCGAGGAACAACTCAAAGATTAAGTTGAG</genome_strand>
        <mrna_strand>GTTCATGGAGAGGTTACTAATCCTGAGGTTGACATGTTTGATAGAGAAAAGGTATTCATTGAAACGGTTCTAAGACCTTTGGTGCAGAAATTTCCACGATTGAAGGTCGTGATGGAGCATGTCACCACCATGGATGCTGTTAAGTTTGTTGAATCTTGCAGTGAAG....................................................................................................................GATTTGTTGCAGCGACTGTCACCCCACAACATCTTGTTTTAAACAGGAATTCTCTCTTCCAAGGGGGCTTACAACCGCATAATTACTGCCTTCCAGTCCTCAAAAGAGAGATCCACA.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGGAGGCACTTGTGTCAGCTGTAACAAGTGGAAGTAAAAGATTTTTTCTTGGGACTGATAGTGCTCCTCATGATAGACGAAGAAAAGAATGTTCTTGTGGATGTGCTGGTATTTACAATGCTCCTGTAGCCTTATCAGTATATGCAAAGGTGTTTGAAAAG.............................................................................................................................................GAAAATGCACTTGACAAGCTCGAAGCATTTACCAGCTTCAATGGACCAGACTTTTATGGGCTTCCGAGGAACAACTCAAAGATTAAGTTGAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0011K05-p7ZAm/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_markers" ref_id="T1786" ref_strand="+" ref_description="T1786">
      <seq>gaagaagcactaaattttccctttttgcatattaaacgctctccatctaacattttgttcagttgtcaataattgactgggaaattgattcccgagatcggcaactggtgttcttcaatactcaattttcgtgcaactctgttaaaatgggttgcgttggatcctcacgtaccaaaggagatgaatctgtcaggaaaataagaaaaccaaagccatggagacacacagaaccaataacaagagctcagcttctaaaaatgcgtgaagaattctgggacactgcaccacactatgggggaaaaaaagagatctgggatgcgctacgtgctgctgccgaggcagaaataggccttgcacaaacaatcgtgaacagtgctgggataattgttcaaaccactgatctaacagtctgctatgatgagagaggtgccaagtatgacttgcctctatacgttttgagcgaaccaacaaatctgactggtgaaaactgagaaggcaatataatcaagtgttcatgcttcattgagactgtaaatgctgtaaattgctcttacaagtcatttctctcaaacattcat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0011K05-p7ZAm/GenomeThreader_SGN_markers/un_xed_seqs" temp_id="C02SLe0011K05.1" temp_strand="+" temp_description="C02SLe0011K05.1  AC215445.1 htgs_phase:3 submitted_to_sgn_as:C02SLe0011K05 sequenced_by:kribb upload_account_name:korea">
        <position start="52781" stop="59107"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="53080" g_stop="53262" g_length="183"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="183" r_length="183" r_score="0.995"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="53263" i_stop="57251" i_length="3989">
            <donor d_prob="0.990" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="57252" g_stop="57374" g_length="123"/>
          <reference_exon_boundary r_type="cDNA" r_start="184" r_stop="306" r_length="123" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="57375" i_stop="58458" i_length="1084">
            <donor d_prob="0.963" d_score="1.00"/>
            <acceptor a_prob="0.990" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="58459" g_stop="58578" g_length="120"/>
          <reference_exon_boundary r_type="cDNA" r_start="307" r_stop="426" r_length="120" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="58579" i_stop="58655" i_length="77">
            <donor d_prob="0.803" d_score="1.00"/>
            <acceptor a_prob="0.989" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="58656" g_stop="58807" g_length="152"/>
          <reference_exon_boundary r_type="cDNA" r_start="427" r_stop="578" r_length="152" r_score="0.993"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLe0011K05.1" gen_strand="+" ref_id="T1786" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>578</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0011K05.1" gen_strand="+"/>
        <rDNA rDNA_id="T1786" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="53080" e_stop="53262"/>
          <exon e_start="57252" e_stop="57374"/>
          <exon e_start="58459" e_stop="58578"/>
          <exon e_start="58656" e_stop="58807"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAGAAGCACTAAATTTTCCCTTTTTGCATATTAAACGCTCTCCATCTAACATTTTGTTCAGTTGTCAATAATTGACTGGGAAATTGATTCCCGAGATCGGCAACTGGTGTTCTTCAATACTCAATTTTCGTGCAACTCTGTTAAAATGGGTTGCGTTGGATCCTCACGTACCAAAGGAGATGGTAATTTGTTTCAACACTTTTTATTGATACCCATTTGGTTACTTCGTGTTTCGTTTGTGTTTGAAGTTGATTGCTTGTTTTCGTGATGAAATTTATTGTTTTCTTCAATTTTTAGTGATACCCATTTGGTTTTCTGATGTATGAAGTGAGTTTCGCAGTGTTTTTTTGAAGTTGATGCTCTCGCTTTCTTGATGAAATTATTGTTTTCTTCAATTTTTAGTGATACCCATTTGGTTCCTTGATGTATGAAGTGAGTTTTCGCTTTTTTGAAGTTGATTGCTCTCGCTTTCTTGATAAAATTATTGGTTTCTTCAATTTTAAGTGATACCCATTTGGTTTCCTGATGTACGAAGTGAGTTTTCGCAGTGTTTTTTTTTTGAAGTTGATTGCTCTCGCTTTTTTGATTAAATTATTGTTTTCTTCAATATTTAATGATACCCATTTGGTTTACTGATGTATGAAGTCCGTGTTTGAAGTTGATTGCTCTCTTTCTTGGTGAAATTATTCTTTTTCTTTAACTTTTAGAGATACACATTTGGTTTTCCAGACAGAAAATGTGTCTTTGTGCGACTCCACTTTCTGTGAGTTCGAAGATTGCATTTGTTCTGGAAGTTGATTGCATTCTTGTTATTATTGGTAGAGTTGTTTGTTTTAGTAATTTTTGGAGATCTCAGTTGGTTATACTGGTATATTGCTATGTATGATCTTGCATTTCTTGGACTCTTTGATTGGTCCTCAAGTAAGTGATATTTGATAATAGATAATTAGTGATGAAATAGGTATTGGGTAGGTATTAGCTCTATTTATATAGCTGTAAGTTCCATTTTGTTGGATATTGTGTCTGTTTGATACTAATGGGTAGGTTGTAGTTGTGGGGATGATGATGTGTTGGTTATTGACTTAAAATATGAGTGTGACAATGAAGAATAGGTCGATAAACTATTGGGGTGAAGTCGTCATCCAATTTATTGAACTGTTCTTTTGTTCTTTCCTTTATATTTGATAAGAGACATCACTATCCTTTTTTCTTTAATAAAGAGAAACCACTGTTTCTTATCATTGGCATTAGTCATCTTGTCTTATTCATATTTCAACTTTGATGTTGTATCCAAAGAAGATTTAACTGAAAGACGTGCTAGATGCAAAAGAATTTGAATAAATAAAGTATATTATTTGGGAGTCGAGAAATACCCCCGAAACAATTAATTAGATATTTGGCAGAATTATTGACAAAGATGCAGAAATAACTCAACATATATGCACTGGAATATAGGTTGGCCAAGTGGCAGAGTACATTCGCCTACTATTTAAATTGATGTACTCATTGAAATTGAAAGGAGAATTATATTACCTAATGAAGAATCATGTGACGTTAAGTGTAAAATGTTAGGCAACTGGAAAGTAATGTTTAGTCCAGAGTCAATTTTATTTAAATAATATAAGATTTGTAATAATAATGACAGAGACTAGAATCAAGGAACTGAAGGGAAGGACTGAAAAACAACATTGTTTGGTAGTGTTGGAAAAAAGGCCATGTTTAATGAAGAATGTGTCTTAGATCAAGTCGGTGTTGACAATTTTAAAATTTTAGCTGGTAAAATGGTGATGGTAAAGCATAGTGGAGTTTTTGTCAAAAATCTGGAGTACTTTCATCATTAGTTTTTTTAGGGTTTGATCTTCAGTTCATAGTTATCGAAGTCCATGCATGCTAGTCGACTGTTTTGATTCTTTCCTCTGAAAGAGATCAACTCAAATAATCAAATCAGATAAAAGTTTGTCTTAATACACTGAATATGGAAATGCACTAGGAAGAGCTTTTTTCTCTATTGAACTTTGTATGGTGTACCTGTTTGTCGGAAAAGATCCTTTTTTCCGATGGTATTGAAAGGTGCACTGCTGGATTTTGATAAAATTGCTCATTTTATCAAAGGTAGTATTAATGAACATATGGTAAAGATTTAGTCTTTGGTTGTACGATTTGACTTTTGTTTGCTTTGCAATTCGACATATTTTCCAATTCACAACCTGTAAAGTTTTTCGCCGGTGTTGCTTCACTTCTTTACTAATATATCACGCAGGATTTTTGGTTTTGTTTGTGGACTTGTAATTTTGCTCTGTTCGTCTTCCTTGATAAGTTGTAATTATTGCTATGCTGACTTAAGCTTTTATTACAACTTCTTGGTATTTCGCATCACCTCATGGTTTTATATTTTGGTTTATATTTTGCTATAATTGATTTCTCATTACCTCCCTAGGCTTTTATTATGACCATGTGCTCTACTATTCTTTCATATTCAATGATCTACAAGTTTTTGTTGTTCCGGACTAATTTCCCCGTTATTTAATGATCCTTCTATTCTTTTTTCTTTTCCCCTCATTAAAGACATGGTTCTTACTATTGCTGCTGGTGCCCTTCATCTCGTGCAGAATTATGTGCTTTACAGACTGTTATATTGAAGTGCTGATGATTGTTTAGTGCTACTGTTAAAATAGATCCATGTAGCTTGTATTTTATCTAATTGGATGTTGTATAATTTGTCTCTTCTCAGTGGCATTCTAGTAGAGTTATATTCCTAAAAAGATAGTCTAGATCAGCACTAGATCACTAGTGATGTTACTATCTACTTTTTAGAGGCATCTGTCCTCAGATATTTGTCTTTGTCCTTTGCATGTTGGCTAATTTAATTTAAAGCATGGGAAAATAGTGGTCTACGTCCTGAAATGTAGTAAGGAACTTTGGAAAGGAAAAGAGATGCCAAGGCGTTTTATTTATAAAGTGATGATTATGATTTTTAAAGGAGTAGCAGTGCATGCCACTATTAACAAACTAAGTCTGATTAAACAATCTAAAAATGTGGGACGAACCACCTTACACCCAAAAGCAAATTCTAGTGCCAATTTATGCTTGCCAATATAACTCATTTTTGGTGGCTGTTAGTGAGCATAATGATTTGGGTCCACCTTACACCCAATAAGGGGGTTCGATGAATTTAGAATTCTAGATACTTTGCGATATATATGCGATGGATAGTGTTTGATACTCCAGCTATTGCTACTGTGACTGCTCTGTGGTGTTGCACTCTAGAATATTTGACTTTTATCCTTTCCCCTTGTTACATTGTAGATAGAACTCTAATTATTTAGTTTCATCATCGAAGATACAAAAAACACAAAACCTTACCTTTTTGTCTTCCCCTACTTTGGACAAAAACAAGTTAAAGCAACACAGTAGGCTTTTTCTTTTTTTCCCGTTCAATGTCCTTCCTTTGAAGAATTCTCCTCCAAACAGCTAGCTTGGACACATCATCTTGCAGAAATGGTGTCTATAAATCACATTCATTATATGAACTGAGTAGTGTGGAAGTGGCTATTGTTTGTTTCCTTGCTTTTGTCAGGAAATTTACCTTGGGTCATCTAGACTACTCTATGCTGCTGTAAGTTCCTCTATTATCATCGTACACCTTCACTCAACTTCTTGACCCATAGAAGTCAGTGGGTGACTTATTCTTCCTGAGATCCATTCCCAAAAAACATGTAATTGTTTTCTTTTCTTAATTCAATCTGAACTTGTCTTTTGTGTCATTATCTGCTCTTAGAATAACACTCTACGGCTCTAGTGTCTGAGTAGGCTGATGTGGAGCAGAGAGCTTGTTATTAGGAGGATCATCCATATTTAGAGAAATAAAGAACAAAATGAATTGAAAATTTATAATAGAGGGTAGATTCTGGAGCCAAGGATTTTATTTCTGGTATTGGATCAGATAATTTGTTCTAACAGAAGTTCAAAGCTTCAAGGATGGATGTTTGATTTCCCATAACCATGTGAAAAATCTTTTTATCTTTTAAGAGTTGTTTCTCGTTCACCTAGTAGAGGTTTCAACATTAAATCATTATGCTAATACTTGAATGATGCTCATATATTAGATATATGTTTCAATTATATAAGTATTATACTTCACCAACATCATATCTTGCTCCTTCATTTGCAGAATCTGTCAGGAAAATAAGAAAACCAAAGCCATGGAGACACACAGAACCAATAACAAGAGCTCAGCTTCTAAAAATGCGTGAAGAATTCTGGGACACTGCACCACACTATGGGGGAAAAAAAGGTAAATCCCTTGATAACTTCTATTAGCTTCTGCAAGTTTCTGGAACCACTGGTTCAATAGAGCTGGATGTGTGATCAGGTTGTACTATGGGCCTCTGCATTCTTATTTGAGTAACCAGTTAGTGTGGGCCAATTGTTAACTCTAGAGTACACATGTGATGATGTCTGACAATCTATCTGGGAGCTTGGGCAGAGTGGATTGACAGTATAATGATGTGTAGGAAGTAGGAACTGCTCTAGTGTGGATCAAAAGAATCGTTCTTGATGATTAGTTGCTCTACTTTAGGAGGGTTTATGTTATGCATTCAAGTTTTCTCATAACGATCTGGCTCCAGTAGTTTGTAACTTGGATATCTCTTTCACAAAAAGAAGTGACCTTGAATTTTTGAAAATCAAGTGGAGCGTGATATCTTTTAACATCCATGCTACATCTAATTTTAAGCTGTGTGCCCTTTTTTTCGGCTGTTCTTAGATATCATGATAATTTCAGAAAGTAAATTCCCAATTTGCTCCTGAGCAATAACAACCTTAATGATCCTTGAAAATGTTTCGGTGCTATCAGTTTGGCAAAGTTGCTGCAGGAAGAAACATGTCAATCTCCAGATCTGTTTTGCCTTTCCATATTGTTGGAAAGAAAGCTGCATTAGTGTCTTTTAAATAGTTCATTAAAACAAGGCACATTAGTTGAGTGAATAAGTAATTTTAACTTCTAATTAAGTGGATAAGTAACTTTCTTTTTTAAAAAAAATGGGAAGCTAATGTCAACTTTCAAAAGAACCCTCTCTTTGCAGCAATGTCAAGGAGCTTGTGTCGGGAAAGCTCTCTTGTAAATCTCACTGTTAATTAGTTTTCAGATCTTCATAGTTGAGATACCATTCAGTGCGTAGAACCTCATATTTTCACGTCGTGAATAATAGGACATCAGACATATGATTTCTTTTTCTGGTGGTTATTGTTAAAATTCAGAGATTGAAATGTATTAACTGATGGTCAGGTAATAGTATACTTGTAGTAGGGAAGGTCCATACTCCAACAGTTTAGTATATGAAAATCTTTTTTCTTACAACATATCACTCCATTTTCAGAGATCTGGGATGCGCTACGTGCTGCTGCCGAGGCAGAAATAGGCCTTGCACAAACAATCGTGAACAGTGCTGGGATAATTGTTCAAACCACTGATCTAACAGTCTGCTATGATGAGAGAGGTTTGTAGTACACGTCGCTTAACACCTTCAACTTCCATTCCTGAGAATCTTAGTTAATGTTGATTCTTCTAATGCAGGTGCCAAGTATGACTTGCCTCTATACGTTTTGAGCGAACCAACAAATCTGACTGGTGAAAACTGAGAAGGCAATATAATCAAGTGTTCATGCTTCATTGAGACTGTAAATGCTGTAAATTGCTCTCACAAGTCATTTCTCTCAAACATTCAT</genome_strand>
        <mrna_strand>GAAGAAGCACTAAATTTTCCCTTTTTGCATATTAAACGCTCTCCATCTAACATTTTGTTCAGTTGTCAATAATTGACTGGGAAATTGATTCCCGAGATCGGCAACTGGTGTTCTTCAATACTCAATTTTCGTGCAACTCTGTTAAAATGGGTTGCGTTGGATCCTCACGTACCAAAGGAGATG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AATCTGTCAGGAAAATAAGAAAACCAAAGCCATGGAGACACACAGAACCAATAACAAGAGCTCAGCTTCTAAAAATGCGTGAAGAATTCTGGGACACTGCACCACACTATGGGGGAAAAAAAG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGATCTGGGATGCGCTACGTGCTGCTGCCGAGGCAGAAATAGGCCTTGCACAAACAATCGTGAACAGTGCTGGGATAATTGTTCAAACCACTGATCTAACAGTCTGCTATGATGAGAGAG.............................................................................GTGCCAAGTATGACTTGCCTCTATACGTTTTGAGCGAACCAACAAATCTGACTGGTGAAAACTGAGAAGGCAATATAATCAAGTGTTCATGCTTCATTGAGACTGTAAATGCTGTAAATTGCTCTTACAAGTCATTTCTCTCAAACATTCAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
    <total_number_ESTs_reported>3</total_number_ESTs_reported>
    </alignment_module>
  <PGL_module xmlns="http://www.genomethreader.org/GTH_output/PGL_module/">
    <predicted_gene_location>
      <PGL_line PGL_serial="1" PGL_strand="-" PGL_start="49533" PGL_stop="43775"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="49533" e_stop="49443"/>
            <exon e_start="49077" e_stop="48912"/>
            <exon e_start="48795" e_stop="48679"/>
            <exon e_start="44413" e_stop="44253"/>
            <exon e_start="44111" e_stop="43775"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.252" acc_prob="1.000" e_score="0.978"/>
          <exon-intron don_prob="0.998" acc_prob="0.860" e_score="1.000"/>
          <exon-intron don_prob="0.980" acc_prob="0.959" e_score="1.000"/>
          <exon-intron don_prob="0.827" acc_prob="0.996" e_score="1.000"/>
          <exon-only e_score="0.840"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.978">
            <gDNA_exon_boundary e_start="49533" e_stop="49443" e_length="91"/>
          </exon>
          <intron i_serial="1" don_prob="0.252" acc_prob="1.000">
            <gDNA_intron_boundary i_start="49442" i_stop="49078" i_length="365"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="49077" e_stop="48912" e_length="166"/>
          </exon>
          <intron i_serial="2" don_prob="0.998" acc_prob="0.860">
            <gDNA_intron_boundary i_start="48911" i_stop="48796" i_length="116"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="48795" e_stop="48679" e_length="117"/>
          </exon>
          <intron i_serial="3" don_prob="0.980" acc_prob="0.959">
            <gDNA_intron_boundary i_start="48678" i_stop="44414" i_length="4265"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="44413" e_stop="44253" e_length="161"/>
          </exon>
          <intron i_serial="4" don_prob="0.827" acc_prob="0.996">
            <gDNA_intron_boundary i_start="44252" i_stop="44112" i_length="141"/>
          </intron>
          <exon e_serial="5" e_score="0.840">
            <gDNA_exon_boundary e_start="44111" e_stop="43775" e_length="337"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="49533" stop="49443"/>
              <exon start="49077" stop="48912"/>
              <exon start="48795" stop="48679"/>
              <exon start="44413" stop="44253"/>
              <exon start="44111" stop="43775"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="C2_At4g22930" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="49077" stop="48912"/>
              <exon start="48795" stop="48679"/>
              <exon start="44413" stop="44253"/>
              <exon start="44111" stop="44020"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="T0493" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="1" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>CACGACAAATTCTCAAGATGGAGTGACTGATCTTTTTGGGAAGTGTTTACCAGTTCTACAAGAAATGGTTGAGCATAATATGCCTTTGCTG : GTTCATGGAGAGGTTACTAATCCTGAGGTTGACATGTTTGATAGAGAAAAGGTATTCATTGAAACGGTTCTAAGACCTTTGGTGCAGAAATTTCCACGATTGAAGGTCGTGATGGAGCATGTCACCACCATGGATGCTGTTAAGTTTGTTGAATCTTGCAGTGAAG : GATTTGTTGCAGCGACTGTCACCCCACAACATCTTGTTTTAAACAGGAATTCTCTCTTCCAAGGGGGCTTACAACCGCATAATTACTGCCTTCCAGTCCTCAAAAGAGAGATCCACA : GGGAGGCACTTGTGTCAGCTGTAACAAGTGGAAGTAAAAGATTTTTTCTTGGGACTGATAGTGCTCCTCATGATAGACGAAGAAAAGAATGTTCTTGTGGATGTGCTGGTATTTACAATGCTCCTGTAGCCTTATCAGTATATGCAAAGGTGTTTGAAAAG : GAAAATGCACTTGACAAGCTCGAAGCATTTACCAGCTTCAATGGACCAGACTTTTATGGGCTTCCGAGGAACAACTCAAAGATTAAGTTGAGTAAGACACCATGGAAGGTACCCGAATCCTTTTCATATGCATCAGGAGATATAATTCCCATGTTTGCTGGTGAAATGCTCGACTGGTTGCCGGCTCCTCTCTGAGAAAGGAAAAAAAAAAGAGATTCCCATTCTCATTTGTTGTTCTTGTACTGTAATACTGTGATTTAACTAAAGATATAGAGTGCAGGTGTGTCATCTTTCCTTTCATGTTTTAGATATTATCGCGATGATAATTATTGAAACA</gDNA_template>
            <first_frame> H  D  K  F  S  R  W  S  D  *  S  F  W  E  V  F  T  S  S  T  R  N  G  *  A  *  Y  A  F  A   : G  S  W  R  G  Y  *  S  *  G  *  H  V  *  *  R  K  G  I  H  *  N  G  S  K  T  F  G  A  E  I  S  T  I  E  G  R  D  G  A  C  H  H  H  G  C  C  *  V  C  *  I  L  Q  *  R :   I  C  C  S  D  C  H  P  T  T  S  C  F  K  Q  E  F  S  L  P  R  G  L  T  T  A  *  L  L  P  S  S  P  Q  K  R  D  P  Q :   G  G  T  C  V  S  C  N  K  W  K  *  K  I  F  S  W  D  *  *  C  S  S  *  *  T  K  K  R  M  F  L  W  M  C  W  Y  L  Q  C  S  C  S  L  I  S  I  C  K  G  V  *  K   : G  K  C  T  *  Q  A  R  S  I  Y  Q  L  Q  W  T  R  L  L  W  A  S  E  E  Q  L  K  D  *  V  E  *  D  T  M  E  G  T  R  I  L  F  I  C  I  R  R  Y  N  S  H  V  C  W  *  N  A  R  L  V  A  G  S  S  L  R  K  E  K  K  K  R  F  P  F  S  F  V  V  L  V  L  *  Y  C  D  L  T  K  D  I  E  C  R  C  V  I  F  P  F  M  F  *  I  L  S  R  *  *  L  L  K   </first_frame>
            <second_frame>  T  T  N  S  Q  D  G  V  T  D  L  F  G  K  C  L  P  V  L  Q  E  M  V  E  H  N  M  P  L  L  :  V  H  G  E  V  T  N  P  E  V  D  M  F  D  R  E  K  V  F  I  E  T  V  L  R  P  L  V  Q  K  F  P  R  L  K  V  V  M  E  H  V  T  T  M  D  A  V  K  F  V  E  S  C  S  E   : G  F  V  A  A  T  V  T  P  Q  H  L  V  L  N  R  N  S  L  F  Q  G  G  L  Q  P  H  N  Y  C  L  P  V  L  K  R  E  I  H   : R  E  A  L  V  S  A  V  T  S  G  S  K  R  F  F  L  G  T  D  S  A  P  H  D  R  R  R  K  E  C  S  C  G  C  A  G  I  Y  N  A  P  V  A  L  S  V  Y  A  K  V  F  E  K  :  E  N  A  L  D  K  L  E  A  F  T  S  F  N  G  P  D  F  Y  G  L  P  R  N  N  S  K  I  K  L  S  K  T  P  W  K  V  P  E  S  F  S  Y  A  S  G  D  I  I  P  M  F  A  G  E  M  L  D  W  L  P  A  P  L  *  E  R  K  K  K  R  D  S  H  S  H  L  L  F  L  Y  C  N  T  V  I  *  L  K  I  *  S  A  G  V  S  S  F  L  S  C  F  R  Y  Y  R  D  D  N  Y  *  N  </second_frame>
            <third_frame>   R  Q  I  L  K  M  E  *  L  I  F  L  G  S  V  Y  Q  F  Y  K  K  W  L  S  I  I  C  L  C  W :   F  M  E  R  L  L  I  L  R  L  T  C  L  I  E  K  R  Y  S  L  K  R  F  *  D  L  W  C  R  N  F  H  D  *  R  S  *  W  S  M  S  P  P  W  M  L  L  S  L  L  N  L  A  V  K  :  D  L  L  Q  R  L  S  P  H  N  I  L  F  *  T  G  I  L  S  S  K  G  A  Y  N  R  I  I  T  A  F  Q  S  S  K  E  R  S  T  :  G  R  H  L  C  Q  L  *  Q  V  E  V  K  D  F  F  L  G  L  I  V  L  L  M  I  D  E  E  K  N  V  L  V  D  V  L  V  F  T  M  L  L  *  P  Y  Q  Y  M  Q  R  C  L  K  R :   K  M  H  L  T  S  S  K  H  L  P  A  S  M  D  Q  T  F  M  G  F  R  G  T  T  Q  R  L  S  *  V  R  H  H  G  R  Y  P  N  P  F  H  M  H  Q  E  I  *  F  P  C  L  L  V  K  C  S  T  G  C  R  L  L  S  E  K  G  K  K  K  E  I  P  I  L  I  C  C  S  C  T  V  I  L  *  F  N  *  R  Y  R  V  Q  V  C  H  L  S  F  H  V  L  D  I  I  A  M  I  I  I  E  T </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02SLe0011K05.1" strand="-"/>
                <serials PGL_serial="1" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="49532" stop="49443"/>
                    <exon start="49077" stop="48912"/>
                    <exon start="48795" stop="48679"/>
                    <exon start="44413" stop="44253"/>
                    <exon start="44111" stop="43917"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>726</number_coding_nucleotides>
                  <number_encoded_amino_acids>242</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>TTNSQDGVTDLFGKCLPVLQEMVEHNMPLLVHGEVTNPEVDMFDREKVFIETVLRPLVQKFPRLKVVMEHVTTMDAVKFVESCSEGFVAATVTPQHLVLNRNSLFQGGLQPHNYCLPVLKREIHREALVSAVTSGSKRFFLGTDSAPHDRRRKECSCGCAGIYNAPVALSVYAKVFEKENALDKLEAFTSFNGPDFYGLPRNNSKIKLSKTPWKVPESFSYASGDIIPMFAGEMLDWLPAPL*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="2" PGL_strand="+" PGL_start="53080" PGL_stop="58807"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="53080" e_stop="53262"/>
            <exon e_start="57252" e_stop="57374"/>
            <exon e_start="58459" e_stop="58578"/>
            <exon e_start="58656" e_stop="58807"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.990" acc_prob="0.999" e_score="0.995"/>
          <exon-intron don_prob="0.963" acc_prob="0.990" e_score="1.000"/>
          <exon-intron don_prob="0.803" acc_prob="0.989" e_score="1.000"/>
          <exon-only e_score="0.993"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.995">
            <gDNA_exon_boundary e_start="53080" e_stop="53262" e_length="183"/>
          </exon>
          <intron i_serial="1" don_prob="0.990" acc_prob="0.999">
            <gDNA_intron_boundary i_start="53263" i_stop="57251" i_length="3989"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="57252" e_stop="57374" e_length="123"/>
          </exon>
          <intron i_serial="2" don_prob="0.963" acc_prob="0.990">
            <gDNA_intron_boundary i_start="57375" i_stop="58458" i_length="1084"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="58459" e_stop="58578" e_length="120"/>
          </exon>
          <intron i_serial="3" don_prob="0.803" acc_prob="0.989">
            <gDNA_intron_boundary i_start="58579" i_stop="58655" i_length="77"/>
          </intron>
          <exon e_serial="4" e_score="0.993">
            <gDNA_exon_boundary e_start="58656" e_stop="58807" e_length="152"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="53080" stop="53262"/>
              <exon start="57252" stop="57374"/>
              <exon start="58459" stop="58578"/>
              <exon start="58656" stop="58807"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="T1786" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="2" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>AAAGAAGCACTAAATTTTCCCTTTTTGCATATTAAACGCTCTCCATCTAACATTTTGTTCAGTTGTCAATAATTGACTGGGAAATTGATTCCCGAGATCGGCAACTGGTGTTCTTCAATACTCAATTTTCGTGCAACTCTGTTAAAATGGGTTGCGTTGGATCCTCACGTACCAAAGGAGATG : AATCTGTCAGGAAAATAAGAAAACCAAAGCCATGGAGACACACAGAACCAATAACAAGAGCTCAGCTTCTAAAAATGCGTGAAGAATTCTGGGACACTGCACCACACTATGGGGGAAAAAAAG : AGATCTGGGATGCGCTACGTGCTGCTGCCGAGGCAGAAATAGGCCTTGCACAAACAATCGTGAACAGTGCTGGGATAATTGTTCAAACCACTGATCTAACAGTCTGCTATGATGAGAGAG : GTGCCAAGTATGACTTGCCTCTATACGTTTTGAGCGAACCAACAAATCTGACTGGTGAAAACTGAGAAGGCAATATAATCAAGTGTTCATGCTTCATTGAGACTGTAAATGCTGTAAATTGCTCTCACAAGTCATTTCTCTCAAACATTCAT</gDNA_template>
            <first_frame> K  E  A  L  N  F  P  F  L  H  I  K  R  S  P  S  N  I  L  F  S  C  Q  *  L  T  G  K  L  I  P  E  I  G  N  W  C  S  S  I  L  N  F  R  A  T  L  L  K  W  V  A  L  D  P  H  V  P  K  E  M  :  N  L  S  G  K  *  E  N  Q  S  H  G  D  T  Q  N  Q  *  Q  E  L  S  F  *  K  C  V  K  N  S  G  T  L  H  H  T  M  G  E  K  K  :  R  S  G  M  R  Y  V  L  L  P  R  Q  K  *  A  L  H  K  Q  S  *  T  V  L  G  *  L  F  K  P  L  I  *  Q  S  A  M  M  R  E  :  V  P  S  M  T  C  L  Y  T  F  *  A  N  Q  Q  I  *  L  V  K  T  E  K  A  I  *  S  S  V  H  A  S  L  R  L  *  M  L  *  I  A  L  T  S  H  F  S  Q  T  F   </first_frame>
            <second_frame>  K  K  H  *  I  F  P  F  C  I  L  N  A  L  H  L  T  F  C  S  V  V  N  N  *  L  G  N  *  F  P  R  S  A  T  G  V  L  Q  Y  S  I  F  V  Q  L  C  *  N  G  L  R  W  I  L  T  Y  Q  R  R  * :   I  C  Q  E  N  K  K  T  K  A  M  E  T  H  R  T  N  N  K  S  S  A  S  K  N  A  *  R  I  L  G  H  C  T  T  L  W  G  K  K  R :   D  L  G  C  A  T  C  C  C  R  G  R  N  R  P  C  T  N  N  R  E  Q  C  W  D  N  C  S  N  H  *  S  N  S  L  L  *  *  E  R :   C  Q  V  *  L  A  S  I  R  F  E  R  T  N  K  S  D  W  *  K  L  R  R  Q  Y  N  Q  V  F  M  L  H  *  D  C  K  C  C  K  L  L  S  Q  V  I  S  L  K  H  S  </second_frame>
            <third_frame>   R  S  T  K  F  S  L  F  A  Y  *  T  L  S  I  *  H  F  V  Q  L  S  I  I  D  W  E  I  D  S  R  D  R  Q  L  V  F  F  N  T  Q  F  S  C  N  S  V  K  M  G  C  V  G  S  S  R  T  K  G  D   : E  S  V  R  K  I  R  K  P  K  P  W  R  H  T  E  P  I  T  R  A  Q  L  L  K  M  R  E  E  F  W  D  T  A  P  H  Y  G  G  K  K   : E  I  W  D  A  L  R  A  A  A  E  A  E  I  G  L  A  Q  T  I  V  N  S  A  G  I  I  V  Q  T  T  D  L  T  V  C  Y  D  E  R   : G  A  K  Y  D  L  P  L  Y  V  L  S  E  P  T  N  L  T  G  E  N  *  E  G  N  I  I  K  C  S  C  F  I  E  T  V  N  A  V  N  C  S  H  K  S  F  L  S  N  I  H </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02SLe0011K05.1" strand="+"/>
                <serials PGL_serial="2" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="53130" stop="53262"/>
                    <exon start="57252" stop="57374"/>
                    <exon start="58459" stop="58578"/>
                    <exon start="58656" stop="58720"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>438</number_coding_nucleotides>
                  <number_encoded_amino_acids>146</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>HFVQLSIIDWEIDSRDRQLVFFNTQFSCNSVKMGCVGSSRTKGDESVRKIRKPKPWRHTEPITRAQLLKMREEFWDTAPHYGGKKEIWDALRAAAEAEIGLAQTIVNSAGIIVQTTDLTVCYDERGAKYDLPLYVLSEPTNLTGEN*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
  </PGL_module>
</GTH_output>
<!--
$ general statistics:
$ 10 chains have been computed
$ 
$ memory statistics:
$ 6072 bytes spliced alignments in total
$ 3 spliced alignments have been stored
$ 2024 bytes was the average size of a spliced alignment
$ 6928 bytes predicted gene locations in total
$ 2 predicted gene locations have been stored
$ 3464 bytes was the average size of a predicted gene location
$ 0 megabytes was the average size of the backtrace matrix
$ 10 backtrace matrices have been allocated
$ 
$ date finished: 2009-12-01 10:38:13
-->
