<?xml version="1.0" encoding="ISO-8859-1"?>
<GTH_output xmlns="http://www.genomethreader.org/GTH_output/" GTH_XML_version="1.1">
  <header xmlns="http://www.genomethreader.org/GTH_output/header/">
    <source program="GenomeThreader" version="0.9.54" build_date="2006-07-28 11:55:15" run_date="2009-12-01 10:36:51"/>
    <gDNA_template_files>
      <temp_name>/tmp/bac-submission-temp-C02SLe0017H17-A4Bcr/GenomeThreader_SGN_E_tomato/un_xed_seqs</temp_name>
    </gDNA_template_files>
    <reference_files>
      <file ref_name="/tmp/bac-submission-temp-C02SLe0017H17-A4Bcr/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" type="ESTcDNA"/>
    </reference_files>
    <splice_site_parameters parameter_type="Bayesian" species="arabidopsis"/>
    <parameters>
      <parameter name="bssmfile" value="arabidopsis"/>
      <parameter name="scorematrixfile" value="BLOSUM62"/>
      <parameter name="searchmode" value="forward=True,reverse=True)"/>
      <parameter name="translationtable" value="1"/>
      <parameter name="frompos" value="0"/>
      <parameter name="topos" value="0"/>
      <parameter name="width" value="0"/>
      <parameter name="verbose" value="False"/>
      <parameter name="skipalignmentout" value="False"/>
      <parameter name="showintronmaxlen" value="120"/>
      <parameter name="minorflen" value="64"/>
      <parameter name="showseqnums" value="False"/>
      <parameter name="gs2out" value="False"/>
      <parameter name="maskpolyatails" value="False"/>
      <parameter name="noautoindex" value="False"/>
      <parameter name="minmatchlen" value="20"/>
      <parameter name="seedlength" value="16"/>
      <parameter name="exdrop" value="2"/>
      <parameter name="online" value="False"/>
      <parameter name="inverse" value="False"/>
      <parameter name="exact" value="False"/>
      <parameter name="chainwf" value="0.500000"/>
      <parameter name="gcmaxgapwidth" value="1000000"/>
      <parameter name="gcmincoverage" value="50"/>
      <parameter name="introncutout" value="False"/>
      <parameter name="autointroncutout" value="0"/>
      <parameter name="icinitialdelta" value="50"/>
      <parameter name="iciterations" value="2"/>
      <parameter name="icdeltaincrease" value="50"/>
      <parameter name="icminremintronlen" value="10"/>
      <parameter name="nou12intronmodel" value="False"/>
      <parameter name="u12donorprob" value="0.990000"/>
      <parameter name="u12donorprob1mism" value="0.900000"/>
      <parameter name="probies" value="0.500000"/>
      <parameter name="probdelgen" value="0.030000"/>
      <parameter name="identityweight" value="2.000000"/>
      <parameter name="mismatchweight" value="-2.000000"/>
      <parameter name="undetcharweight" value="0.000000"/>
      <parameter name="deletionweight" value="-4.000000"/>
      <parameter name="dpminexonlen" value="5"/>
      <parameter name="dpminintronlen" value="50"/>
      <parameter name="shortexonpenal" value="100"/>
      <parameter name="shortintronpenal" value="100"/>
      <parameter name="wzerotransition" value="80"/>
      <parameter name="wdecreasedoutput" value="80"/>
      <parameter name="leadcutoffsmode" value="RELAXED"/>
      <parameter name="termcutoffsmode" value="STRICT"/>
      <parameter name="cutoffsminexonlen" value="5"/>
      <parameter name="scoreminexonlen" value="50"/>
      <parameter name="minaveragessp" value="0.500000"/>
      <parameter name="minalignmentscore" value="0.900000"/>
      <parameter name="maxalignmentscore" value="1.000000"/>
      <parameter name="mincoverage" value="0.900000"/>
      <parameter name="maxcoverage" value="100.000000"/>
      <parameter name="intermediate" value="False"/>
      <parameter name="sortags" value="False"/>
      <parameter name="sortagswf" value="1.000000"/>
      <parameter name="first" value="0"/>
      <parameter name="exondistri" value="False"/>
      <parameter name="introndistri" value="False"/>
      <parameter name="refseqcovdistri" value="False"/>
    </parameters>
    <overall_reference_type>ESTcDNA</overall_reference_type>
  </header>
  <alignment_module>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0017H17-A4Bcr/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E291294" ref_strand="+" ref_description="SGN-E291294 [cLET-2-I23]">
      <seq>tggtccattctttttcaaatggcctttctttagtactacagcttgcagaggatcaatttaccgagcattgggcctcatggtagctgcatcaccttgtgcattagctgtggcaccattggcttacgcaactgccatcagtgcttgtgcaaaaaggggcatattgcttaaaggtggacaggtacttgatgccttggcttcatgccatagtattgcatttgacaaaactggtacattgacaacaggggagttcatgtgcaaagcaattgaaccgatacatggacatgctaagagtgttggaaaaggatttgcttcttgttgtaaccccagttgtgagaaagaagcacttgctgttgcagctgcaatggagaggggtacaactcacccaattggaagggctgttgtagatcatagcacaggcaaagaccttccttcaatttcagttgaaagttttgagaatttacctggtagaggcataattgcaacattatcgagctttgagccaagac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0017H17-A4Bcr/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02SLe0017H17.1" temp_strand="-" temp_description="C02SLe0017H17.1  AC215447.2 htgs_phase:3 submitted_to_sgn_as:C02SLe0017H17 sequenced_by:kribb upload_account_name:korea">
        <position start="2331" stop="377"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="2031" g_stop="1991" g_length="41"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="41" r_length="41" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="1990" i_stop="1702" i_length="289">
            <donor d_prob="0.991" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="1701" g_stop="1589" g_length="113"/>
          <reference_exon_boundary r_type="cDNA" r_start="42" r_stop="154" r_length="113" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="1588" i_stop="1202" i_length="387">
            <donor d_prob="0.946" d_score="1.00"/>
            <acceptor a_prob="0.956" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="1201" g_stop="963" g_length="239"/>
          <reference_exon_boundary r_type="cDNA" r_start="155" r_stop="393" r_length="239" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="962" i_stop="783" i_length="180">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="782" g_stop="677" g_length="106"/>
          <reference_exon_boundary r_type="cDNA" r_start="394" r_stop="499" r_length="106" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="676" i_stop="414" i_length="263">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="413" g_stop="407" g_length="7"/>
          <reference_exon_boundary r_type="cDNA" r_start="500" r_stop="506" r_length="7" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLe0017H17.1" gen_strand="-" ref_id="SGN-E291294" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>506</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0017H17.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E291294" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="2031" e_stop="1991"/>
          <exon e_start="1701" e_stop="1589"/>
          <exon e_start="1201" e_stop="963"/>
          <exon e_start="782" e_stop="677"/>
          <exon e_start="413" e_stop="407"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGGTCCATTCTTTTTCAAATGGCCTTTCTTTAGTACTACAGGTAATTTTAGAAGTCTATATTTTGCATATACTTCTTTATTTGTCTTTAGTTGTTGCTATCTGCATCAGTCTTTCTTGCATTAATAAACCGACATTCCAATGAAGAAAAAGGGATTTTAGTACATATTTTTTTAGGTGTTAAATAGGTTAAAAGAACTGTTATTTACTATCAAGTAGAACTTATTTTTATGATTTTTAAGCAGGATGTTTCTACATGGATGTATCCATTTCATCATATTATCTCTGTACTGATTGGTTACCTGGTGTCTTCTTTTCTTTCTTTTTTCCAGCTTGCAGAGGATCAATTTACCGAGCATTGGGCCTCATGGTAGCTGCATCACCTTGTGCATTAGCTGTGGCACCATTGGCTTACGCAACTGCCATCAGTGCTTGTGCAAAAAGGGTATCTTTCCAAATTGGAAGACAGTCTACTAATTAACCTTGTGCTGTCAAATCTTTTCACCAGTCTTTCTTTCAATATTCTCCTAATTACAAGTTACTAAGTTCGAAAAAAATCAATCCTACTTATGGGAAACTTGTATAATACCTCATCATAGTCATGCAGTATGTTTGAATTTTACTCATCATATACTATTATAAATGCTACTGGCAATTCTGGCAGCATCGTTTCTAAATGTTGTTCTTACTATGGTAACCTGTATAATTCTCATAACATTTTCATTATTATAAATGTTATTGCCAGGATCTGAGCAGAGTGATATTATCAAATGTTGTTTCAGGCTCAGCCATTTCTGTTCACAGGTTGTGATGTGGTGAATTTTCTTTTTAGGGCATATTGCTTAAAGGTGGACAGGTACTTGATGCCTTGGCTTCATGCCATAGTATTGCATTTGACAAAACTGGTACATTGACAACAGGGGAGTTCATGTGCAAAGCAATTGAACCGATACATGGACATGCTAAGAGTGTTGGAAAAGGATTTGCTTCTTGTTGTAACCCCAGTTGTGAGAAAGAAGCACTTGCTGTTGCAGCTGCAATGGAGAGGGGTACAACTCACCCAATTGGAAGGTGTTATGAATGATAAGCCTCTATATATTTATTTTTTCGTGATCTCATTTATCTGTTTATCTGTTTGATATGTCTCTGTATACATAAATCTTCAATGCTCGCCTACACCTTTCTAAAGTTACGATTCTGTAATGTTACCTTTTAGTGAGTCTAATCCTCTTTGCTTCTTCATTCATGCAGGGCTGTTGTAGATCATAGCACAGGCAAAGACCTTCCTTCAATTTCAGTTGAAAGTTTTGAGAATTTACCTGGTAGAGGCATAATTGCAACATTATCGAGCTTTGAGGTATTCCTTTTCGTATCTGCTCACTATTAATTCTAATTTTTTCCATTCATTACTTTTTTCGGTTCATCAATTGTTAGAAACTTTAATCAAACAATATAGATGAACACCACATGGCCTATTGATATTTCATATTTCTGTTATCTGCATTCTGCAACACACTCTTTTCTTTTTATCTGTGCCCAGTTTTTTTTCTTAACTTATAATTTGCTGTTACTTTATTCAATTTGAAAAAAACTTAATTGTTTAATGTATCTGTCCTGTAGCCAAGAC</genome_strand>
        <mrna_strand>TGGTCCATTCTTTTTCAAATGGCCTTTCTTTAGTACTACAG.................................................................................................................................................................................................................................................................................................CTTGCAGAGGATCAATTTACCGAGCATTGGGCCTCATGGTAGCTGCATCACCTTGTGCATTAGCTGTGGCACCATTGGCTTACGCAACTGCCATCAGTGCTTGTGCAAAAAGG...................................................................................................................................................................................................................................................................................................................................................................................................GGCATATTGCTTAAAGGTGGACAGGTACTTGATGCCTTGGCTTCATGCCATAGTATTGCATTTGACAAAACTGGTACATTGACAACAGGGGAGTTCATGTGCAAAGCAATTGAACCGATACATGGACATGCTAAGAGTGTTGGAAAAGGATTTGCTTCTTGTTGTAACCCCAGTTGTGAGAAAGAAGCACTTGCTGTTGCAGCTGCAATGGAGAGGGGTACAACTCACCCAATTGGAAG....................................................................................................................................................................................GGCTGTTGTAGATCATAGCACAGGCAAAGACCTTCCTTCAATTTCAGTTGAAAGTTTTGAGAATTTACCTGGTAGAGGCATAATTGCAACATTATCGAGCTTTGAG.......................................................................................................................................................................................................................................................................CCAAGAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0017H17-A4Bcr/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E707440" ref_strand="+" ref_description="SGN-E707440 [FA33AA11]">
      <seq>cgctataggccccagtattattgagagagagaaagaagggaacaaaaaatgcattttcagtgaaaatattcggcaaaaaatggaagctctgcgtctttcaacttccttctcagggatcaattgttcaatctacaaatctacaaggagactcaaagtcaaccggaatctcttgttctcttcattgaaacccatatcttcagttccaattcgaagctccgctcagttccgtggacgcatccactgttctgcttgcagctgttcctctcacagtcaccaacatcatcatcatcaccatgaccatagtcatgatcatcacaatcaccatcaccaccaccaccaccatggtcatgacgaaggcgacgggaagctcacgaaatttcaggaggtatttctcaagttcgcaaatgctatcagatggacccagttggcgaattacttgagagagaatttagagctttgctgttgctcagcggttttgtttattgctgctgctgtttgtccttactttcttcccgggcccgctgtactgcctctccagcgtattttcgctctcattgcctttcctctcgttggggtctcagcatcacttgatgcattagtggacattactggtggtaaaatcaatattcatgtactcatggctctcgcagcttttgcatcagtttttatggggaacgtattggaaggtggcttgcttcttgcaatgttcaatttagctcacatagctgaagagtatttcactagtcgctccaagggtgacgtaaaggaattaaaagaaaaccatcctgaatttgctcttgtgctgcacgtagacaatcaaactttgcctagtttcactgacttgtc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0017H17-A4Bcr/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02SLe0017H17.1" temp_strand="-" temp_description="C02SLe0017H17.1  AC215447.2 htgs_phase:3 submitted_to_sgn_as:C02SLe0017H17 sequenced_by:kribb upload_account_name:korea">
        <position start="5948" stop="4000"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="5649" g_stop="5076" g_length="574"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="574" r_length="574" r_score="0.993"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="5075" i_stop="4645" i_length="431">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="4644" g_stop="4494" g_length="151"/>
          <reference_exon_boundary r_type="cDNA" r_start="575" r_stop="725" r_length="151" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="4493" i_stop="4421" i_length="73">
            <donor d_prob="0.987" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="4420" g_stop="4300" g_length="121"/>
          <reference_exon_boundary r_type="cDNA" r_start="726" r_stop="846" r_length="121" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLe0017H17.1" gen_strand="-" ref_id="SGN-E707440" ref_strand="+">
        <total_alignment_score>0.995</total_alignment_score>
        <cumulative_length_of_scored_exons>846</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0017H17.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E707440" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="5649" e_stop="5076"/>
          <exon e_start="4644" e_stop="4494"/>
          <exon e_start="4420" e_stop="4300"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGCAATTTGCCCCAGTATTATTGAGAGAGAGAAAGAAGGGAACAAAAAATGCATTTTCAGTGAAAATATTCGGCAAAAAATGGAAGCTCTGCGTCTTTCAACTTCCTTCTCAGGGATCAATTGTTCAATCTACAAATCTACAAGGAGACTCAAAGTCAACCGGAATCTCTTGTTCTCTTCATTGAAACCCATATCTTCAGTTCCAATTCGAAGCTCCGCTCAGTTCCGTGGACGCATCCACTGTTCTGCTTGCAGCTGTTCCTCTCACAGTCACCAACATCATCATCATCACCATGACCATAGTCATGATCATCACAATCACCATCACCACCACCACCACCATGGTCATGACGAAGGCGACGGGAAGCTCACGAAATTTCAGGAGGTATTTCTCAAGTTCGCAAATGCTATCAGATGGACCCAGTTGGCGAATTACTTGAGAGAGAATTTAGAGCTTTGCTGTTGCTCAGCGGTTTTGTTTATTGCTGCTGCTGTTTGTCCTTACTTTCTTCCCGGGCCCGCTGTACTGCCTCTCCAGCGTATTTTCGCTCTCATTGCCTTTCCTCTCGTTGGGGTATTAGATCTTCTCTCTTTTCGCTGTTCATTATTTTGCAATCACAAATGCTTTCAGTAATACTGTACAATTGACTTGTTTGATTGAACAGTTTGACTATGGAGATACTCAAATTTCAAATGCCTATAATGAGATTAATTAAGTAGGAGAGTTATGATATAAATTCATAAGTCTAATCTGTTAGTCTCAAATTTTACCGGATAGATTGAGTTACAGAATTAGTACTGATTACAAGGTGTCAAGTACGCTACATTTTAGAACTTTGAATTTTGGATCTTTTAAGTCCTCAGAATCTCTCGTCAATGGTGTTGTGAATATCAATATGTGTAAATCCATGCATAATATAGTCACAATTACTATGTCTTCTCTTGAGATGAAACATTATAATTCCTTAGGCTAGTTCTATAATTAAAGTTTCACTTTATTGTCAGGTCTCAGCATCACTTGATGCATTAGTGGACATTACTGGTGGTAAAATCAATATTCATGTACTCATGGCTCTCGCAGCTTTTGCATCAGTTTTTATGGGGAACGTATTGGAAGGTGGCTTGCTTCTTGCAATGTTCAATTTAGCTCACATAGGTAAGTAAAAAGTTTGGGAATGTCCTCTGAGACACTTGGAACTTTTTTATCTTATATATATTTGTTTGTGCAGCTGAAGAGTATTTCACTAGTCGCTCCAAGGGTGACGTAAAGGAATTAAAAGAAAACCATCCTGAATTTGCTCTTGTGCTGCACGTAGACAATCAAACTTTGCCTAGTTTCACTGACTTGTC</genome_strand>
        <mrna_strand>CGCTATAGGCCCCAGTATTATTGAGAGAGAGAAAGAAGGGAACAAAAAATGCATTTTCAGTGAAAATATTCGGCAAAAAATGGAAGCTCTGCGTCTTTCAACTTCCTTCTCAGGGATCAATTGTTCAATCTACAAATCTACAAGGAGACTCAAAGTCAACCGGAATCTCTTGTTCTCTTCATTGAAACCCATATCTTCAGTTCCAATTCGAAGCTCCGCTCAGTTCCGTGGACGCATCCACTGTTCTGCTTGCAGCTGTTCCTCTCACAGTCACCAACATCATCATCATCACCATGACCATAGTCATGATCATCACAATCACCATCACCACCACCACCACCATGGTCATGACGAAGGCGACGGGAAGCTCACGAAATTTCAGGAGGTATTTCTCAAGTTCGCAAATGCTATCAGATGGACCCAGTTGGCGAATTACTTGAGAGAGAATTTAGAGCTTTGCTGTTGCTCAGCGGTTTTGTTTATTGCTGCTGCTGTTTGTCCTTACTTTCTTCCCGGGCCCGCTGTACTGCCTCTCCAGCGTATTTTCGCTCTCATTGCCTTTCCTCTCGTTGGG...............................................................................................................................................................................................................................................................................................................................................................................................................................................GTCTCAGCATCACTTGATGCATTAGTGGACATTACTGGTGGTAAAATCAATATTCATGTACTCATGGCTCTCGCAGCTTTTGCATCAGTTTTTATGGGGAACGTATTGGAAGGTGGCTTGCTTCTTGCAATGTTCAATTTAGCTCACATAG.........................................................................CTGAAGAGTATTTCACTAGTCGCTCCAAGGGTGACGTAAAGGAATTAAAAGAAAACCATCCTGAATTTGCTCTTGTGCTGCACGTAGACAATCAAACTTTGCCTAGTTTCACTGACTTGTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0017H17-A4Bcr/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E707526" ref_strand="+" ref_description="SGN-E707526 [FA33BA11]">
      <seq>cgctatttgccccagtattattgagagagagaaagaagggaacaaaaaatgcattttcagtgaaaatattcggcaaaaaatggaagctctgcgtctttcaacttccttctcagggatcaattgttcaatctacaaatctacaaggagactcaaagtcaaccggaatctcttgttctcttcattgaaacccatatcttcagttccaattcgaagctccgctcagttccgtggacgcatccactgttctgcttgcagctgttcctctcacagtcaccaacatcatcatcatcaccatgaccatagtcatgatcatcacaatcaccatcaccaccaccaccaccatggtcatgacgaaggcgacgggaagctcacgaaatttcaggaggtatttctcaagttcgcaaatgctatcagatggacccagttggcgaattacttgagagagaatttagagctttgctgttgctcagcggttttgtttattgctgctgctgtttgtccttactttcttcccgggcccgctgtactgcctctccagcgtattttcgctctcattgcctttcctctcgttggggtctcagcatcacttgatgcattagtggacattactggtggtaaaatcaatattcatgtactcatggctctcgcagcttttgcatcagtttttatggggaacgtattggaaggtggcttgcttcttgcaatgttcaatttagctcacatagctgaagagtatttcactagtcgctccaagggtgacgtaaaggaattaaaagaaaaccatcctgaatttgctcttgtgctgc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0017H17-A4Bcr/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02SLe0017H17.1" temp_strand="-" temp_description="C02SLe0017H17.1  AC215447.2 htgs_phase:3 submitted_to_sgn_as:C02SLe0017H17 sequenced_by:kribb upload_account_name:korea">
        <position start="5948" stop="4040"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="5649" g_stop="5076" g_length="574"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="574" r_length="574" r_score="0.997"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="5075" i_stop="4645" i_length="431">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="4644" g_stop="4494" g_length="151"/>
          <reference_exon_boundary r_type="cDNA" r_start="575" r_stop="725" r_length="151" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="4493" i_stop="4421" i_length="73">
            <donor d_prob="0.987" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="4420" g_stop="4340" g_length="81"/>
          <reference_exon_boundary r_type="cDNA" r_start="726" r_stop="806" r_length="81" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLe0017H17.1" gen_strand="-" ref_id="SGN-E707526" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>806</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0017H17.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E707526" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="5649" e_stop="5076"/>
          <exon e_start="4644" e_stop="4494"/>
          <exon e_start="4420" e_stop="4340"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGCAATTTGCCCCAGTATTATTGAGAGAGAGAAAGAAGGGAACAAAAAATGCATTTTCAGTGAAAATATTCGGCAAAAAATGGAAGCTCTGCGTCTTTCAACTTCCTTCTCAGGGATCAATTGTTCAATCTACAAATCTACAAGGAGACTCAAAGTCAACCGGAATCTCTTGTTCTCTTCATTGAAACCCATATCTTCAGTTCCAATTCGAAGCTCCGCTCAGTTCCGTGGACGCATCCACTGTTCTGCTTGCAGCTGTTCCTCTCACAGTCACCAACATCATCATCATCACCATGACCATAGTCATGATCATCACAATCACCATCACCACCACCACCACCATGGTCATGACGAAGGCGACGGGAAGCTCACGAAATTTCAGGAGGTATTTCTCAAGTTCGCAAATGCTATCAGATGGACCCAGTTGGCGAATTACTTGAGAGAGAATTTAGAGCTTTGCTGTTGCTCAGCGGTTTTGTTTATTGCTGCTGCTGTTTGTCCTTACTTTCTTCCCGGGCCCGCTGTACTGCCTCTCCAGCGTATTTTCGCTCTCATTGCCTTTCCTCTCGTTGGGGTATTAGATCTTCTCTCTTTTCGCTGTTCATTATTTTGCAATCACAAATGCTTTCAGTAATACTGTACAATTGACTTGTTTGATTGAACAGTTTGACTATGGAGATACTCAAATTTCAAATGCCTATAATGAGATTAATTAAGTAGGAGAGTTATGATATAAATTCATAAGTCTAATCTGTTAGTCTCAAATTTTACCGGATAGATTGAGTTACAGAATTAGTACTGATTACAAGGTGTCAAGTACGCTACATTTTAGAACTTTGAATTTTGGATCTTTTAAGTCCTCAGAATCTCTCGTCAATGGTGTTGTGAATATCAATATGTGTAAATCCATGCATAATATAGTCACAATTACTATGTCTTCTCTTGAGATGAAACATTATAATTCCTTAGGCTAGTTCTATAATTAAAGTTTCACTTTATTGTCAGGTCTCAGCATCACTTGATGCATTAGTGGACATTACTGGTGGTAAAATCAATATTCATGTACTCATGGCTCTCGCAGCTTTTGCATCAGTTTTTATGGGGAACGTATTGGAAGGTGGCTTGCTTCTTGCAATGTTCAATTTAGCTCACATAGGTAAGTAAAAAGTTTGGGAATGTCCTCTGAGACACTTGGAACTTTTTTATCTTATATATATTTGTTTGTGCAGCTGAAGAGTATTTCACTAGTCGCTCCAAGGGTGACGTAAAGGAATTAAAAGAAAACCATCCTGAATTTGCTCTTGTGCTGC</genome_strand>
        <mrna_strand>CGCTATTTGCCCCAGTATTATTGAGAGAGAGAAAGAAGGGAACAAAAAATGCATTTTCAGTGAAAATATTCGGCAAAAAATGGAAGCTCTGCGTCTTTCAACTTCCTTCTCAGGGATCAATTGTTCAATCTACAAATCTACAAGGAGACTCAAAGTCAACCGGAATCTCTTGTTCTCTTCATTGAAACCCATATCTTCAGTTCCAATTCGAAGCTCCGCTCAGTTCCGTGGACGCATCCACTGTTCTGCTTGCAGCTGTTCCTCTCACAGTCACCAACATCATCATCATCACCATGACCATAGTCATGATCATCACAATCACCATCACCACCACCACCACCATGGTCATGACGAAGGCGACGGGAAGCTCACGAAATTTCAGGAGGTATTTCTCAAGTTCGCAAATGCTATCAGATGGACCCAGTTGGCGAATTACTTGAGAGAGAATTTAGAGCTTTGCTGTTGCTCAGCGGTTTTGTTTATTGCTGCTGCTGTTTGTCCTTACTTTCTTCCCGGGCCCGCTGTACTGCCTCTCCAGCGTATTTTCGCTCTCATTGCCTTTCCTCTCGTTGGG...............................................................................................................................................................................................................................................................................................................................................................................................................................................GTCTCAGCATCACTTGATGCATTAGTGGACATTACTGGTGGTAAAATCAATATTCATGTACTCATGGCTCTCGCAGCTTTTGCATCAGTTTTTATGGGGAACGTATTGGAAGGTGGCTTGCTTCTTGCAATGTTCAATTTAGCTCACATAG.........................................................................CTGAAGAGTATTTCACTAGTCGCTCCAAGGGTGACGTAAAGGAATTAAAAGAAAACCATCCTGAATTTGCTCTTGTGCTGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0017H17-A4Bcr/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E746337" ref_strand="+" ref_description="SGN-E746337 [GI|47104717]">
      <seq>atttttgaaaccgataaagaagtgggaaacaaattcctccgtcacatacggccaaaggcggaggagatactactggtcggaagtctctgattaacggaaatggttaattcaaaaaacaactcttctaccgacagcgaaaactcctccggtgacgttcccgactctaaacctagtctctactttgaaggcgagaaggttctcgcttatcatggccctcgcatctacgaagcaaaggtccaaaaagcagagctgcggaagaacgaatggagatacttcgttcattaccttggctggaacaaaaattgggatgaatgggtaggagctgaccgcttgatgaagcacacggaagacaacgtcttgaagcagcaggccctggacaagaagcagggcatggagaaaagtactaaatctggacgttcagcaccggcaaaacccaaaagctcagctgatgttaaactggacaaggaagaaactaagagcaatgttccaaaagggaaaaagcgcaaaactgactcaggcgctgagaagggcaatgtatctgtagagaaacttgtgaagattcagattccatctactttgaagaagcaactggttgatgattgggagttcatcatgcaccagaataagcttgtgaagctcccacgatctcccactgtggatgatatattgaccaagtaccttgaataccgatccaaaaaggacgggatgatgactgattcagttggggagatactgaatggaattcgatgctattttgacaaagcactgcctgcacttttattgtacaagaaggagcgccaacagtatcatgaagcagtttcagataatgtctctccatctagtgtatatggtgctgaacatctattacgcctttttgtaaaattacccgagttgattgcatatgcaaaaattgacgaggagtcattaacgaagttgcaacagaaatttctagactttctcaagtttttacagaaaaaccagggtactttcttcctatctgcttatgatggtcctaaagcctctgaaggaaatggcaaggataaagaaagctgagcagtcaaccaatttagctagaatcagaatgagtcgcatcagaagcattggcggtatttcttgaacatgccaatatgcctactggtgatgcccacaattatagggcaaactctttgttgttgtgtgctgtgatctgtatcagtagatcattttttattcctggagaactattcatttgcaacttatatagtcaggtgatcaactttcgataggatagttctgcctgttacaatagtttattgattgttgttaaattgcatgcacctatagagtttagtgccacaaaaaatctagatgattgtggactctttgtacttcagttacaaagtttagcagcctctgtaccacttagctttaccatagcgtaggtgctggaagggttttattgctattttacactcagattggactcatcaacttggctctgatgactacatctgatactcttgaaggactattattttgctgttacatagagctgattttaaattaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0017H17-A4Bcr/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02SLe0017H17.1" temp_strand="-" temp_description="C02SLe0017H17.1  AC215447.2 htgs_phase:3 submitted_to_sgn_as:C02SLe0017H17 sequenced_by:kribb upload_account_name:korea">
        <position start="17516" stop="6331"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="17217" g_stop="16984" g_length="234"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="234" r_length="234" r_score="0.979"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="16983" i_stop="15390" i_length="1594">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.647" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="15389" g_stop="15336" g_length="54"/>
          <reference_exon_boundary r_type="cDNA" r_start="235" r_stop="288" r_length="54" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="15335" i_stop="15149" i_length="187">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.989" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="15148" g_stop="15135" g_length="14"/>
          <reference_exon_boundary r_type="cDNA" r_start="289" r_stop="302" r_length="14" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="15134" i_stop="13886" i_length="1249">
            <donor d_prob="0.000" d_score="0.00"/>
            <acceptor a_prob="0.999" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="13885" g_stop="13740" g_length="146"/>
          <reference_exon_boundary r_type="cDNA" r_start="303" r_stop="448" r_length="146" r_score="0.993"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="13739" i_stop="13131" i_length="609">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.968" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="13130" g_stop="13095" g_length="36"/>
          <reference_exon_boundary r_type="cDNA" r_start="449" r_stop="484" r_length="36" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="13094" i_stop="11132" i_length="1963">
            <donor d_prob="0.937" d_score="0.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="11131" g_stop="11091" g_length="41"/>
          <reference_exon_boundary r_type="cDNA" r_start="485" r_stop="525" r_length="41" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="11090" i_stop="10554" i_length="537">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="10553" g_stop="10452" g_length="102"/>
          <reference_exon_boundary r_type="cDNA" r_start="526" r_stop="627" r_length="102" r_score="0.990"/>
        </exon>
        <intron i_serial="7">
          <gDNA_intron_boundary i_start="10451" i_stop="9761" i_length="691">
            <donor d_prob="0.991" d_score="0.98"/>
            <acceptor a_prob="0.989" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="8">
          <gDNA_exon_boundary g_start="9760" g_stop="9681" g_length="80"/>
          <reference_exon_boundary r_type="cDNA" r_start="628" r_stop="707" r_length="80" r_score="0.988"/>
        </exon>
        <intron i_serial="8">
          <gDNA_intron_boundary i_start="9680" i_stop="8665" i_length="1016">
            <donor d_prob="0.972" d_score="1.00"/>
            <acceptor a_prob="0.951" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="9">
          <gDNA_exon_boundary g_start="8664" g_stop="8495" g_length="170"/>
          <reference_exon_boundary r_type="cDNA" r_start="708" r_stop="877" r_length="170" r_score="0.994"/>
        </exon>
        <intron i_serial="9">
          <gDNA_intron_boundary i_start="8494" i_stop="8163" i_length="332">
            <donor d_prob="0.868" d_score="0.98"/>
            <acceptor a_prob="0.999" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="10">
          <gDNA_exon_boundary g_start="8162" g_stop="8078" g_length="85"/>
          <reference_exon_boundary r_type="cDNA" r_start="878" r_stop="962" r_length="85" r_score="0.976"/>
        </exon>
        <intron i_serial="10">
          <gDNA_intron_boundary i_start="8077" i_stop="7210" i_length="868">
            <donor d_prob="0.993" d_score="0.98"/>
            <acceptor a_prob="0.999" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="11">
          <gDNA_exon_boundary g_start="7209" g_stop="6632" g_length="578"/>
          <reference_exon_boundary r_type="cDNA" r_start="963" r_stop="1544" r_length="582" r_score="0.957"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="1545" polyA_stop="1563"/>
      <MATCH_line gen_id="C02SLe0017H17.1" gen_strand="-" ref_id="SGN-E746337" ref_strand="+">
        <total_alignment_score>0.975</total_alignment_score>
        <cumulative_length_of_scored_exons>1540</cumulative_length_of_scored_exons>
        <coverage percentage="0.985" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0017H17.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E746337" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="17217" e_stop="16984"/>
          <exon e_start="15389" e_stop="15336"/>
          <exon e_start="15148" e_stop="15135"/>
          <exon e_start="13885" e_stop="13740"/>
          <exon e_start="13130" e_stop="13095"/>
          <exon e_start="11131" e_stop="11091"/>
          <exon e_start="10553" e_stop="10452"/>
          <exon e_start="9760" e_stop="9681"/>
          <exon e_start="8664" e_stop="8495"/>
          <exon e_start="8162" e_stop="8078"/>
          <exon e_start="7209" e_stop="6632"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTTTTGAAACCGATAAAGAAGTGGGAAACAAATTCCTCCGTCACATACGGCCAAAGGCGGAGGAGATACTACTGGTCGGAAGTCTCGGATAAACGGAAATGGTTAACTCAAAAAACAACTCTTCTACCGACAGCGAAAATTCCTCCGGTGACGTTCCCGACTCTAAACCTAGTCTCTACTTTGAAGGCGAGAAGGTTCTCGCTTATCATGGCCCTCGCATCTACGAAGCAAAGGCACGTTTCTTGTTTTTCTCTTTTCATCTTATGCAGAAATCGCTAATTTTGTTTGGGTATACCGTAATTAATTGCCGAAATTGAATGATTAGGCCTTTTATCACACGTATCTTCCTTTGGATTATTCGTGTATCTAATTTGTCTGTAACGGTTGTGTCATATCTTCTCTGATTTATGTTTGATAATTGGTTGAGATTTTTTGTCATTTTGCTTTTCTGTTTGCTGTTAGATATGCACCACTTTGCATCCGATTGTGTGATGATTTCAGGGGAACTATTATGACTTTTGGACTGTTTCATCCATATTTAATGCTAAATTGGCGTAGAATTAGAGTTGCAAATTATACTAATCCTGTCCTGTAATCCATAATTCTGTTCGTTTTTTTAGCTTTATGAATAAATTATGGATTGTCTCTACTGTTTGATGCTTTTAGGTTTGCTTTATCATCTTAACTCATTGCTCTACTGACTCTAATCTAGACTTAGGGGTCAATCTATTGATTTTTTCTGTGGACTCCACTCTCTCTGCTCTAATGTCTGTTAAGCCTTCTCAAAGATTAGGTAAACTAAACAATTGGCAGTGTCGAAGGATGTTACATATATGAACATCCTCATATAGATTGTGGAAGGGTTCCTAAATTGATTTAGCGATCTTGAGCTAGTCTCCATCATGATTTTATTTAGATAATCTGATTTGCGCCCCATAGCAAACTTTTTGGCATGATTGTTTTCACATATCATAGAAACAATTTTTAATGTCTTATATATTCAATACATTTACACTGATTTTGTATTTTTGTGCAATCCATGTAAATATGGGTTGATCTGAGTTTAAGAACTGGGATGAATTTTGGAAAATATACTTCAACTTTTGACCTATTCCAGTTACCCGATCTTCCCTGCAAATCATGTTTTTGTATGTCAAGAGAATGCAACTCTAGACAATATATGGTTCTTATACGGAGGATTGCTAGTTTCACCTCTTATAGTTATGCACTAGTGTATTTCTGACAGGATATAGTGTGTGATATGTAGGTCAGATGCACATCATGGGTTCGAATCCTACCATAGACAAAGGCCTGATATTTAAGTGGAAAAGGGTAGAGGGGCAGGTTCATTATCCACTGAGTTTTGAACCATACACCACTAGCCGTTGGAAATTTCTCAGTTATTAAAAAAAAGTACTACTCAGCTTATTGAAATTACATATTAGTGAATAATTTGAGTTGTTGGGATTAGTTTTGGCTTCGTTGATATAGGACAATTGAAGTACTAAGTTTGCAAATGTTGTTGTTATTTGTGTATTTTCTCTAAAGCTCGAACTTTACTTTGAGAATGCTTGCACTTTGCTCTTGCTTATAACTCTCAAAATCGTGTTGTTTGTTTACACTTGTGACAATTGAAAATACCAATTGTGTATAAGTTTTTTCTTACAAGAGAAAGCTTCATTTCCTCTATATGGAAAACAATTAGTGTACGGTGATATAGTGCTTGCCTTCTACAAATTGTAGCGCCCTGATGAAATCATGTTATTTAATGCTTGCTACAAGATTTTTGCGACCCTCCAATTTGATCCTTGCATTTCTTCTTTGAAGGTCCAAAAAGCAGAGCTGCGGAAGAACGAATGGAGATACTTCGTTCATTACCTTGTAAGTTTAAATTTATATCTTCTTTCACCATATGCTTTACATATGACAATTAAATTTGGTACTTCTTTAGTTAAAAGATGTGAGAAAGCTTGTAGCATAGCCTTACATTATTACCTTGTTTAAAATTTTTTCAATATTCTTAATGATATCGAGAAATAATACTCCTTTTATTTATTTTAATTTACAGGGCTGGAACAAAAAGTGAGTTTATGAAGTTACTTGTAGAAAGTTCTTAATTCAAGAGTATCTTAAATTGCTAGTCACATCAGGATTGAAAGGTTGACCAACTCATTTGAATGTTGAATGTGCTGCCTTAAAAGTTTTTTCTTTGAATGTTCTGCTCCGAAGGAGCTTGGCCTTGAGCAAGAGGCATAGAGTAATTTGATGCTTCCTTGTTGATTATGGTGATTATTTTACAAATTATATGTGGAAGGTTGTGCTGCTCTGGATTTAAAGTGCAATTGTGAATACATAATTTTGATTTGCATAGCATCAGGTAGCACAATGAATTTGGTCTTTGGATATTAATAGCGAAGTTTTATCATTTTAACTACATGCTCCTTTTGTTTCAAATTTAGTGTTCATCTCTCCATTTTGATCTTTTGGGAGAATATTTTCATTTTCTGTAAATGGGAATGATTCGAAGATTTAATACTTTACATGGGGATCTACCTTTACTCTGATCCTTAAGCACTTTCTTTATGTTATTCTAACAAACATTTGCCAATATTTCAAATAATCCTAATTCCTATCTTCCCATATAAATTCAAACAATGATGTTGAAATAGAAAAGGACTGATAACAAGTTCTCTCAGCTTTTTTGCCTGTGTAATAAGGACTAATTCAATAGACATTCATGATTTCACTGTTCTCCCCCTGTCTTATTGTGCATGGTACTTTTACTATTTAGATACTCAAGCTCTTTCTTTGGACTACAGTTTTTTTACAATATTTTTAATTTAAAAAATCATTTACAAATGTTTGTAACTTCGTAAATTTATTCAAAAAAATTAAGCAATTGATGGTTAAATTTTTGCTCTGAAATTACATTCTATGACTTGGTACTCCAAACCCCATAAACTCTTTTCAGCGACAGGAAATAATAGCTATTTTACATTGCTGTGTACGTCTGGTTCTGCAGCAAATGTGAAGCTAGTTTTTTGTGTACTTCAATCTGAATTTTGGATGTTGTAGTTGTTAACTCTCTGATTTAAAAATAATGATTTACTTTCTTTTTTAGTCTGTTTCAGAAAGATTGACCCATTTCCTTTTTTGGCAACACTTTAGTTTTAGCTTTCCATGTAGCATGTTTAGGAACATAAGATTAGAGGACATTTTGGTACATTTGACATAAATTAAACTAGGTCCTTTTTTTTTAAACAGAGGGAGTATTTGTTGATTGTAAGTATATTCTGCAAACCCTAATTCCTGAAACTATGTCTTGTAACAGTTGGGATGAATGGGTAGGAGCTGACCGCTTGATGAAGCACACAGAAGACAACGTCTTGAAGCAGCAGGCCCTGGACAAGAAGCAGGGCATGGAGAAAAGTACTAAATCTGGACGTTCAGCACCGGCAAAACCCAAAAGCTCAGCTGGTAAGTTTTCTCTAGGTTTATATTAGAATGAGGGCTATAGATGACCATTTTAGGTAGTTCTCTGGTCATGGAAATACTTTCTTGCATAACCATTTTTAAGTAGTTCTCAGCTGGTATGTTTTCTCTAGGTTTATATTGGAATGAAGGCTATAGATGACCATTGTAGGTAGTTCTCTGGTCATGGAAATACTTCCTTGCGTAACATATCGAAATTTATAACACTTTTCAGGTATCAGTATTACTCCTGATGCCTTTTATAGAAGTCGAAAGTCTATTTGGAGAATTAGCTGATTGAAATATAATAGTCGTTTGAACCAAATTCCAGAAGATTAGTTTCTTAATGATGTTTGGTTATGTGACTCGGAAATATGGAAACGTCACCAAAGTTAAGGTTGTAAATCCTCTTTAGCATAACTTGACATACCAACATGTACTCTTTTTGTTGTTCTAACTCATGTTTTCAATTTCGAAGTTCTCTTTGCATATCTAACAGTGAATGTTAATTACAAAACCAAATGCCTGTCTCCTCTGAAGGAAAGATGATGTAACGGAGTCAAGGGTTAGGTCTAGGGATTGAATTCTTGTTAGTAACTTACTTTTCATTTGCAGATGTTAAACTGGACAAGGAAGAAACTAAGAGCAATGGTATGCCATCTTATGATTTTGAATTTTGTGCTTCTCCTTGAGCTCTTCTGCATTATTTGTTGGGGGTGGATGGTAATTATGTGGCTTGGACATTATTCCTCCTTGAATTGTGTTTGCTTTGAGTTTTTTTTTGTTGACACTAGTAACATTTTGTGTTTGCTTTGAGTTAATTTAGGCCTGATAGTAATAATAAGGCCAGAAGGTAGGGATTCCCACCGTCCTCCACATAAGTAGAGTAGGTTGGTCTGTTAGATATAAATTCCCTTTTTTGTTGGATAAGGAATTTTTTTCCTTATTTTTGACTCTCCATTTAACTTTTGTTTTTAAAGAAGCTGCATAACCCTTCCCAAAGACCTCATTCTGAAAGCCTCCCAGTTCCCTTTCCAAATTAAAGAAATGGGGCACTGATTAATAAAGCATCCTTGACCTCAACCGTAACTGCGGGTACTGATGAATCAGGTATCCTGAACCTCAACCCTAACTTCTTTAGAACAATTATTGCTGTGTGTTGCTTTATTAGTTTCATTTTTAGTTGTAAAACTAATGTTTAGGAAGTAGTCTTCTTGTATATACTGGAAATCTATCCCAAACCTAATTATTATGTATTTTTTGACATAATATACTTTATTGATTGTCTTTGTCAAAAAAATATACTTTATTGATTATATTTAGGCAATGTACATTTTTCTCAGAAAAGTTAAATCTCATTTTTTTAAGCCGCCTTAATCAAATGTTCCACTCAGAAACACCATATAATCTAGTTGTATTTCAATTTGTCTAGCAAATCAATTAGAAAGCTGTAGTAATTGCATTTATGAGGGTATAAATGAAGCATGCTGGATGAATACCTTGATAAGACACAGTTTTAGACTTAAGTATGGATTATGTGACTTGGAAGACGCAATGCATATACTAGGATGTTAAGCATAGGTGGAAGAAAAATAAGAAAAGGAGGAAAATCAGAAGGATTGCCAAGAAGCAAGATATGATTGCATTGGAGAAGTAATGATTGTCTTTCCTATAACAAAAGAAAGTATAAGGGCAACAAAGGCCATTACCTTAAATTTTCAATAGTTGACATGCCTTTGACTGAGTATACACATAGAATGTGGAGGCTCGTCTTTCTGTTTGTAAAATTAATCAGGGATCACAAGAAACACAAAGAATATGGAAGAAAATTGGTCATTACTAGAATTTTGTGCCTCGCTTTCTTCTTTGGCGAGGCTTGCTCATGCATATTTTTCATGTTCTACCATAGCAAAGAGACAACTTCTTTCTTCTTGCCTTTGCATATGCTCTAAGAATGCATGTTCTGATCACTATTTACTACTATGATTGCTAGCTCATACTCGTTATCTAGTTTAAATTTTGGTATTAGAGATCTAATTGAGGTAAAAGATTTGACTCTTCGACTGGCTTTTGGACATTTAACTGATGGAAGCTGTACCCGGGCAGTACATAAAATTAGTATAGCTCAATCAAAGTATCCAGTTCCATTCAAATCCCCTGATGATAACTTATACAAAAGGTTTTGGGTTATCAGATCAAATCAAATGTTAAAGACCTTGATAACTGTGGAGAATCCCACTCAAAATTCTCACTGTTGTGGGTAACATTCATGTGCAGTGGATACGATTATTAGGATACATGCAAGATGGGAAGGTAAAAGTCAAAACCTACAGTGTTCTCCTTAACTTTCCTATTGGCGTTTGTCTACTATGGACACTGTAATATTGTAGATGAAATAGCCTTGAGTTGGTCAAGGTGTTGACTTTGTTCTAGTCATATCATGCTATGCTGGAGTATACCTGTTTTATCTTAGGATTACGTATTACCAAATTAGACAGAAAGATTCTGTTAAGTAAGGTCTATTTGATCTGCTTATAAGAAAATCTAGTCTGTTAGTTTCTATTGGGGATTTGCTTATAAGAAATTTATCTTTAAAATTGAACTTTTCTTGCAGTTCCAAAAGGGAAAAAGCGCAAAACTGACTCAGGCGCTGAGGTTTGCTTAATTCTAGACTCTATAACTCACTGTTTCTTTTTCCTTTTCGAGGTAATCGTTGACACTCTTCTTGTGTAGAGGCCCAACATTTACTTCCAAATAACATTGTTGGACTAAATCGTTATGTAAAGTTATTTACATTCTGCAGAATACTCCATTAATAACACCTCCATTTTAGTCATATTAAGCTGTGTGATTTAGGCACCACTATCCCCTCCCTCTCTAATCACACTTCTTTTTCCTTTGAAGACATTTTTTGTTGAAAAGTTCCTCAGCTATTATTTAAGTGCTTCAATCACATCGAAGGAAGTGATTTAAAAAGACCTGCAATTGCTTGATCAATACAAACTTAGGTAAAAATAGGGACAATGGAAGAAAAAGATCCATGTAGGTGATAGCTATTAGTTGAGGATAGGTATTAGACTCGTATGGAACTTCCTTTTTTTTTTCTGGTAATGCGTAGTAGTAGTAGTTGTTTTTGTTGTATAGTATTAGTGTTTGAAAGATATTGATTTGTAACTCGGTCATTGATGGCAGAAGGGCAATGTATCTGTAGAGAAACTTGTGAAGATTCAGATTCCATCTACTTTGAAGAAGCAACTAGTTGATGATTGGGAGTTCATCATGCACCAGAATAAGGTATATATGTGTAGGATAATGACTAAGTCTATATGTCGTATTTTCTGTTGGCAAGCTCATTAGCAGTTGAAGACACAAGTGACTCAAAAAGATCTTGGATTCCTCTGTTTCGATTTCTAGTGTTTCATGGAGATTGACTCCTATAAAAAAAAAATTTATCAAGTAATATAGTTCCAGTCATATTATTAAGGTTGCTTAGCGGGAGCCGTGCTCCAACAAGAACCGAGTCCTAGTATTGGACACATTGTGGATGTAAGTAAAGCGTTGTCTTGTAAGGTTGATGGATTGGAGCATAGATGGAAAATGGGAAACCCATAATAGAGCAATCAACCAGCAGTAGAATTGCTGACTCATCTTATCTCAACTTGAAACCCCCCCCCCCACACACACACAAAAGGCGCAGACAAATAGATAAGGGCGATGCCTAATTTGCTTTTGAGATCTTTGCTGATTTACTAGACTAAGTCCCTCCCAGGCCCAGCTAATCTGAGCAGGAATTTTATGAGATTAAATCGTACTGGATAATATGACACTTATCTGTCCTGCTACATGTCTGTATTCTTCCCTACAAGTGCATGCTGGAGTTGATCAAATTTCTTTTCTTCATTTTGTTCAGACTATGTTGGTTCTTAGTGTTGGTTGCTAAATACAATATTGCCAGTGATGATATCTGATGTGTTATTCTTAACAGCTTGTGAAGCTCCCACGATCTCCTACTGTGGATGATATATTGACCAAGTACCTTGAATACCGATCCAAAAAGGACGGGATGTAAGTTCACTGCCCTTTTCTTTTCATGTAAGGGTGGATTTATTGCTGAGCTGTGGTTATGCATCTATGTTTCATTCTGGTGTCCTGTAATTTGCATGGTCAATGTTGGAATATATTGGTTCTACCCGGTATTTGTACCGGTAAGAGGTAAGAGGTAACAGGTATCCGGTAGAATTCGTTAAGGTGCGCACAAGCTGGCCTAAAAACCACCATCATAAAAAAGAAACATTTGAAAGAACTAATTGCGAAATTGGTTCTTTCAAATATTTCTTTTTTATGATGGTGGTGTTTGGGCCAGCTTGTGGGCACCTTGACGAATTCTACTGGACACATGTTACCTCCTACCGGTACAAATATCGGGTAGCTTTGCCCACCAAGGCTTGGGCAAATGGGAAGAAATGACCTAGTGCTTTTTGTCTCGATTGGAGTTGAAGTTGAGACCTCATGGTTCTCCCCTACTTCATGGAGCACTAGTTCATTATCTTTGGGGGAAAACAAGTCTTTTAACACCTTTGGGGGCGATATTGGTTCTTTCAAAACTTAGCTTTTAACTCTGTCAGTAAAACTCATGCACGTTTAAGGACCTATAGTCTAGTGTAGGATATTGTCGATTCACTAAATTATGCTTTCTTGATATCAAGTTGGTAGTTGATTTATTGCTAAATGGTAAGTTTTTTCACCAAAAAAAAGCAAGTTACTTTTGATCTTGTTGAACTGCTTCTTATCGGATTCATATACACAACCAGTTAGCTTCAACTCCTATGTGTCTGCATTAAGTCATTGGAAATTACTACAGTTTCAGAATAGACCGAGTTTCCCATCTTGTTGACTCCTATTTGCAGAAGTAGGTAATATCAAAGGCCAACATTATTTGCAGAAGTATATCATCTCTGCTGGCCACAAGTACCTTTGCATGAGTAGTCAATGCATACTGAGTGTATTTAGTATGGCATAAAATGACTTTGGAGGTATAGTTCATTTAATAAAAATGCCTTCCAAATGTTTGATCCTCGCAGGATGACTGATTCAGTTGGGGAGATACTGAATGGAATTCGATGCTATTTTGACAAAGCACTGCCTGCACTTTTATTGTACAAGAAGGAGCGCCAACAGTATCATGAAGCAGTTTCAGATAATGTCTCTCCATCTAGTGTATATGGTGCTGAACATCTATTGCGCCTTTTTGGTATGAAAAAGTACCAAGTGTTCATGTTATTTAATTGACCCCAAGAGAAAGATATGTACCTTAGAAAATCTCATGTTGCAGAGGATAAAACAGTATAAATTTCATATGTTTTTCTGTATGCTTGTATATCTTTACTTAATCAAAAGATATTTTCTCACAAGATTGTAAAGTCTTAATTTGTTTGCTGATGTTGCAGTTGAATCAAAAAAAAATTGTTTAAAGTTCGGTTTTTTCAGAGGGCAAGCCTATATGAATGTTCTATCATGTTCCGTCAAATTATCAAAAGATATTTTCTTACTAGATTGTATTTAATTTGTTTGCTGATGTTGCAGTAAAATTGCCCGAGTTGATTGCATATGCAAAAATTGACGAGGAGTCGTTAACGAAGTTGCAACAGAAATTTCTAGACTTTCTCAAGTATATGCTCTTTTCCTTTACTTCCTTCTGGACAAGATTATTGTTATTATTATTATTATTATTATTATGTTATGGAATTATGTTGTGATTGAATTGCTACCTTGAAACAGCCCACAAGCTGATGTGTTCACTGTGGGAGCTGTGTAAGGATGGTGCAATTTGATAACTGCTGCATTGGCTGGCCTTACCTAGTCTTTTTTGACTATTGGTCTAATCACATGATTCTCTTCTGGAAAGCACCAGCAAGTTCACTAGCTTATTTTGGATTCCTTTTTTAACTTCCATGACAATTTTCAAGAAAACATCTTAAGCATTGAGAATATTTAACAATATTCATCTTCTTCTTTAATTCTGAATATTAAGCTAGCGCAGCAATTTCACAGTGAATTTAACCACTATGGTGAAGTGCCTGAAAAAGCAGTTGCATCAGATTTTGATGAAAAGAAGGGTTTTTAGGTTATCTTAAAAGGGAGAAGCCCATTACATGTAGCATCCCACGTTCACGCAGGGCCCCAGGGTAGAGCCGCACCCCAATGGGGTGTTTTAGTTTACCTTACCAGAAAAAGGGGGGTGGGGTGGGGGTGGGGGATGTTCACTTAAATCATACCTTATCAAAAGATGAAAAAGAAAAGGGAAGAGCGTCTTAGTATTGTAACTGATGAAAAGTGAAAATGAATAAAAGATATCCATATGCTTTCTGCCTTCTGTAAGAACCAGCTCAACAGCAACATTAAGTTAAAGAATTCTATTGTACAATTTTTCTGGCTGAGATTTGGTGCTTTGAGGGTGACTTGGATTGAGGAAACACCTATTATGTTGATGTATCATCTTGCAAATGAGCTTTTACCTTGTGCTTGTGTGATTGCAGGTTTTTGCAGAAAAACCAGGGTACTTTCTTCCTATCTGCTTATGATGGTCCTAAAGCCTCTGAAGGAAATGGCAAGGATAAAGAAAGCTGAGCAGTCTACCAATTTAGCTAGAATTAGAATGAGTCGCATCAGAAGCATTGGCGGTATTTCTTGAACACGCCAATATGCCTACTGGTGATGCCCGCAATTATAGGGCAAACTCTTTGTTGTTGTGTG-TGTGATCTGTATCAGTAGATCATTTTTTATTCCTGGAGAACTATTCATTTGCAACTTATATAGTCAGGTGATCAACTTTCGATAGGA-GGTTCTGCCTGTTACAATAGTTTATTGATTGTTGTTAAATTGCATGCACCTATAGAGTTTGGTGCCACAAAAAATCT--A-GATCGTGAACTCTTTGTACTTTAAGTTACAAAGTTTAGCAGCCTCTGTACCACTTAGCTTCACCATAGCGTAGGTGCTGAAAGGGTTTTATTGCTATTTTACATTCAGATTGGACTCATCAACTTGGCTCTGATGACTACATCTGATACTCTTGAAGGACTATTAATTTGCTGTTACATAGAGCTGATTTTAAATT</genome_strand>
        <mrna_strand>ATTTTTGAAACCGATAAAGAAGTGGGAAACAAATTCCTCCGTCACATACGGCCAAAGGCGGAGGAGATACTACTGGTCGGAAGTCTCTGATTAACGGAAATGGTTAATTCAAAAAACAACTCTTCTACCGACAGCGAAAACTCCTCCGGTGACGTTCCCGACTCTAAACCTAGTCTCTACTTTGAAGGCGAGAAGGTTCTCGCTTATCATGGCCCTCGCATCTACGAAGCAAAG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTCCAAAAAGCAGAGCTGCGGAAGAACGAATGGAGATACTTCGTTCATTACCTT...........................................................................................................................................................................................GGCTGGAACAAAAA.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTGGGATGAATGGGTAGGAGCTGACCGCTTGATGAAGCACACGGAAGACAACGTCTTGAAGCAGCAGGCCCTGGACAAGAAGCAGGGCATGGAGAAAAGTACTAAATCTGGACGTTCAGCACCGGCAAAACCCAAAAGCTCAGCTG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATGTTAAACTGGACAAGGAAGAAACTAAGAGCAATG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTCCAAAAGGGAAAAAGCGCAAAACTGACTCAGGCGCTGAG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAGGGCAATGTATCTGTAGAGAAACTTGTGAAGATTCAGATTCCATCTACTTTGAAGAAGCAACTGGTTGATGATTGGGAGTTCATCATGCACCAGAATAAG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTTGTGAAGCTCCCACGATCTCCCACTGTGGATGATATATTGACCAAGTACCTTGAATACCGATCCAAAAAGGACGGGAT........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATGACTGATTCAGTTGGGGAGATACTGAATGGAATTCGATGCTATTTTGACAAAGCACTGCCTGCACTTTTATTGTACAAGAAGGAGCGCCAACAGTATCATGAAGCAGTTTCAGATAATGTCTCTCCATCTAGTGTATATGGTGCTGAACATCTATTACGCCTTTTTG............................................................................................................................................................................................................................................................................................................................................TAAAATTACCCGAGTTGATTGCATATGCAAAAATTGACGAGGAGTCATTAACGAAGTTGCAACAGAAATTTCTAGACTTTCTCAA....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTTTTACAGAAAAACCAGGGTACTTTCTTCCTATCTGCTTATGATGGTCCTAAAGCCTCTGAAGGAAATGGCAAGGATAAAGAAAGCTGAGCAGTCAACCAATTTAGCTAGAATCAGAATGAGTCGCATCAGAAGCATTGGCGGTATTTCTTGAACATGCCAATATGCCTACTGGTGATGCCCACAATTATAGGGCAAACTCTTTGTTGTTGTGTGCTGTGATCTGTATCAGTAGATCATTTTTTATTCCTGGAGAACTATTCATTTGCAACTTATATAGTCAGGTGATCAACTTTCGATAGGATAGTTCTGCCTGTTACAATAGTTTATTGATTGTTGTTAAATTGCATGCACCTATAGAGTTTAGTGCCACAAAAAATCTAGATGATTGTGGACTCTTTGTAC-TTCAGTTACAAAGTTTAGCAGCCTCTGTACCACTTAGCTTTACCATAGCGTAGGTGCTGGAAGGGTTTTATTGCTATTTTACACTCAGATTGGACTCATCAACTTGGCTCTGATGACTACATCTGATACTCTTGAAGGACTATTATTTTGCTGTTACATAGAGCTGATTTTAAATT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0017H17-A4Bcr/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E378867" ref_strand="+" ref_description="SGN-E378867 [TUS-3-E7](-)">
      <seq>gtgaagattcagattccatctactttgaagaagcaactagttgatgattgggagttcatcatgcaccagaataagcttgtgaagctcccacgatctcctactgtggatgatatattgaccaagtaccttgaataccgatccaaaaaggacgggatgatgactgattcagttggggagatactgaatggaattcgatgctattttgacaaagcactgcctgcacttttattgtacaagaaggagcgccaacagtatcatgaagcagtttcagataatgtctctccatctagtgtatatggtgctgaacatctattgcgcctttttgtaaaattgcccgagttgattgcatatgcaaaaattgacgaggagtcgttaacgaagttgcaacagaaatttctagactttctcaagtttttgcagaaaaaccagggtactttcttcctatctgcttatgatggtcctaaagcctctgaaggaaatggcaaggataaagaaagctgagcagtctaccaatttagctagaattagaatgagtcgcatcagaagcattggcggtatttcttgaacacgccaatatgcctactggtgatgcccgcaattatagggcaaactctttgttgttgtgtgtgtgatctgtatcagtagatcattttttattcctggagaactattcatttgcaacttatatagtcaggtgatcaactttcggtaggaggttctgcct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0017H17-A4Bcr/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02SLe0017H17.1" temp_strand="-" temp_description="C02SLe0017H17.1  AC215447.2 htgs_phase:3 submitted_to_sgn_as:C02SLe0017H17 sequenced_by:kribb upload_account_name:korea">
        <position start="10826" stop="6596"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="10526" g_stop="10452" g_length="75"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="75" r_length="75" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="10451" i_stop="9761" i_length="691">
            <donor d_prob="0.991" d_score="1.00"/>
            <acceptor a_prob="0.989" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="9760" g_stop="9681" g_length="80"/>
          <reference_exon_boundary r_type="cDNA" r_start="76" r_stop="155" r_length="80" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="9680" i_stop="8665" i_length="1016">
            <donor d_prob="0.972" d_score="1.00"/>
            <acceptor a_prob="0.951" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="8664" g_stop="8495" g_length="170"/>
          <reference_exon_boundary r_type="cDNA" r_start="156" r_stop="325" r_length="170" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="8494" i_stop="8163" i_length="332">
            <donor d_prob="0.868" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="8162" g_stop="8078" g_length="85"/>
          <reference_exon_boundary r_type="cDNA" r_start="326" r_stop="410" r_length="85" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="8077" i_stop="7210" i_length="868">
            <donor d_prob="0.993" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="7209" g_stop="6896" g_length="314"/>
          <reference_exon_boundary r_type="cDNA" r_start="411" r_stop="724" r_length="314" r_score="0.997"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLe0017H17.1" gen_strand="-" ref_id="SGN-E378867" ref_strand="+">
        <total_alignment_score>0.999</total_alignment_score>
        <cumulative_length_of_scored_exons>724</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0017H17.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E378867" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="10526" e_stop="10452"/>
          <exon e_start="9760" e_stop="9681"/>
          <exon e_start="8664" e_stop="8495"/>
          <exon e_start="8162" e_stop="8078"/>
          <exon e_start="7209" e_stop="6896"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTGAAGATTCAGATTCCATCTACTTTGAAGAAGCAACTAGTTGATGATTGGGAGTTCATCATGCACCAGAATAAGGTATATATGTGTAGGATAATGACTAAGTCTATATGTCGTATTTTCTGTTGGCAAGCTCATTAGCAGTTGAAGACACAAGTGACTCAAAAAGATCTTGGATTCCTCTGTTTCGATTTCTAGTGTTTCATGGAGATTGACTCCTATAAAAAAAAAATTTATCAAGTAATATAGTTCCAGTCATATTATTAAGGTTGCTTAGCGGGAGCCGTGCTCCAACAAGAACCGAGTCCTAGTATTGGACACATTGTGGATGTAAGTAAAGCGTTGTCTTGTAAGGTTGATGGATTGGAGCATAGATGGAAAATGGGAAACCCATAATAGAGCAATCAACCAGCAGTAGAATTGCTGACTCATCTTATCTCAACTTGAAACCCCCCCCCCCACACACACACAAAAGGCGCAGACAAATAGATAAGGGCGATGCCTAATTTGCTTTTGAGATCTTTGCTGATTTACTAGACTAAGTCCCTCCCAGGCCCAGCTAATCTGAGCAGGAATTTTATGAGATTAAATCGTACTGGATAATATGACACTTATCTGTCCTGCTACATGTCTGTATTCTTCCCTACAAGTGCATGCTGGAGTTGATCAAATTTCTTTTCTTCATTTTGTTCAGACTATGTTGGTTCTTAGTGTTGGTTGCTAAATACAATATTGCCAGTGATGATATCTGATGTGTTATTCTTAACAGCTTGTGAAGCTCCCACGATCTCCTACTGTGGATGATATATTGACCAAGTACCTTGAATACCGATCCAAAAAGGACGGGATGTAAGTTCACTGCCCTTTTCTTTTCATGTAAGGGTGGATTTATTGCTGAGCTGTGGTTATGCATCTATGTTTCATTCTGGTGTCCTGTAATTTGCATGGTCAATGTTGGAATATATTGGTTCTACCCGGTATTTGTACCGGTAAGAGGTAAGAGGTAACAGGTATCCGGTAGAATTCGTTAAGGTGCGCACAAGCTGGCCTAAAAACCACCATCATAAAAAAGAAACATTTGAAAGAACTAATTGCGAAATTGGTTCTTTCAAATATTTCTTTTTTATGATGGTGGTGTTTGGGCCAGCTTGTGGGCACCTTGACGAATTCTACTGGACACATGTTACCTCCTACCGGTACAAATATCGGGTAGCTTTGCCCACCAAGGCTTGGGCAAATGGGAAGAAATGACCTAGTGCTTTTTGTCTCGATTGGAGTTGAAGTTGAGACCTCATGGTTCTCCCCTACTTCATGGAGCACTAGTTCATTATCTTTGGGGGAAAACAAGTCTTTTAACACCTTTGGGGGCGATATTGGTTCTTTCAAAACTTAGCTTTTAACTCTGTCAGTAAAACTCATGCACGTTTAAGGACCTATAGTCTAGTGTAGGATATTGTCGATTCACTAAATTATGCTTTCTTGATATCAAGTTGGTAGTTGATTTATTGCTAAATGGTAAGTTTTTTCACCAAAAAAAAGCAAGTTACTTTTGATCTTGTTGAACTGCTTCTTATCGGATTCATATACACAACCAGTTAGCTTCAACTCCTATGTGTCTGCATTAAGTCATTGGAAATTACTACAGTTTCAGAATAGACCGAGTTTCCCATCTTGTTGACTCCTATTTGCAGAAGTAGGTAATATCAAAGGCCAACATTATTTGCAGAAGTATATCATCTCTGCTGGCCACAAGTACCTTTGCATGAGTAGTCAATGCATACTGAGTGTATTTAGTATGGCATAAAATGACTTTGGAGGTATAGTTCATTTAATAAAAATGCCTTCCAAATGTTTGATCCTCGCAGGATGACTGATTCAGTTGGGGAGATACTGAATGGAATTCGATGCTATTTTGACAAAGCACTGCCTGCACTTTTATTGTACAAGAAGGAGCGCCAACAGTATCATGAAGCAGTTTCAGATAATGTCTCTCCATCTAGTGTATATGGTGCTGAACATCTATTGCGCCTTTTTGGTATGAAAAAGTACCAAGTGTTCATGTTATTTAATTGACCCCAAGAGAAAGATATGTACCTTAGAAAATCTCATGTTGCAGAGGATAAAACAGTATAAATTTCATATGTTTTTCTGTATGCTTGTATATCTTTACTTAATCAAAAGATATTTTCTCACAAGATTGTAAAGTCTTAATTTGTTTGCTGATGTTGCAGTTGAATCAAAAAAAAATTGTTTAAAGTTCGGTTTTTTCAGAGGGCAAGCCTATATGAATGTTCTATCATGTTCCGTCAAATTATCAAAAGATATTTTCTTACTAGATTGTATTTAATTTGTTTGCTGATGTTGCAGTAAAATTGCCCGAGTTGATTGCATATGCAAAAATTGACGAGGAGTCGTTAACGAAGTTGCAACAGAAATTTCTAGACTTTCTCAAGTATATGCTCTTTTCCTTTACTTCCTTCTGGACAAGATTATTGTTATTATTATTATTATTATTATTATGTTATGGAATTATGTTGTGATTGAATTGCTACCTTGAAACAGCCCACAAGCTGATGTGTTCACTGTGGGAGCTGTGTAAGGATGGTGCAATTTGATAACTGCTGCATTGGCTGGCCTTACCTAGTCTTTTTTGACTATTGGTCTAATCACATGATTCTCTTCTGGAAAGCACCAGCAAGTTCACTAGCTTATTTTGGATTCCTTTTTTAACTTCCATGACAATTTTCAAGAAAACATCTTAAGCATTGAGAATATTTAACAATATTCATCTTCTTCTTTAATTCTGAATATTAAGCTAGCGCAGCAATTTCACAGTGAATTTAACCACTATGGTGAAGTGCCTGAAAAAGCAGTTGCATCAGATTTTGATGAAAAGAAGGGTTTTTAGGTTATCTTAAAAGGGAGAAGCCCATTACATGTAGCATCCCACGTTCACGCAGGGCCCCAGGGTAGAGCCGCACCCCAATGGGGTGTTTTAGTTTACCTTACCAGAAAAAGGGGGGTGGGGTGGGGGTGGGGGATGTTCACTTAAATCATACCTTATCAAAAGATGAAAAAGAAAAGGGAAGAGCGTCTTAGTATTGTAACTGATGAAAAGTGAAAATGAATAAAAGATATCCATATGCTTTCTGCCTTCTGTAAGAACCAGCTCAACAGCAACATTAAGTTAAAGAATTCTATTGTACAATTTTTCTGGCTGAGATTTGGTGCTTTGAGGGTGACTTGGATTGAGGAAACACCTATTATGTTGATGTATCATCTTGCAAATGAGCTTTTACCTTGTGCTTGTGTGATTGCAGGTTTTTGCAGAAAAACCAGGGTACTTTCTTCCTATCTGCTTATGATGGTCCTAAAGCCTCTGAAGGAAATGGCAAGGATAAAGAAAGCTGAGCAGTCTACCAATTTAGCTAGAATTAGAATGAGTCGCATCAGAAGCATTGGCGGTATTTCTTGAACACGCCAATATGCCTACTGGTGATGCCCGCAATTATAGGGCAAACTCTTTGTTGTTGTGTGTGTGATCTGTATCAGTAGATCATTTTTTATTCCTGGAGAACTATTCATTTGCAACTTATATAGTCAGGTGATCAACTTTCGATAGGAGGTTCTGCCT</genome_strand>
        <mrna_strand>GTGAAGATTCAGATTCCATCTACTTTGAAGAAGCAACTAGTTGATGATTGGGAGTTCATCATGCACCAGAATAAG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTTGTGAAGCTCCCACGATCTCCTACTGTGGATGATATATTGACCAAGTACCTTGAATACCGATCCAAAAAGGACGGGAT........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATGACTGATTCAGTTGGGGAGATACTGAATGGAATTCGATGCTATTTTGACAAAGCACTGCCTGCACTTTTATTGTACAAGAAGGAGCGCCAACAGTATCATGAAGCAGTTTCAGATAATGTCTCTCCATCTAGTGTATATGGTGCTGAACATCTATTGCGCCTTTTTG............................................................................................................................................................................................................................................................................................................................................TAAAATTGCCCGAGTTGATTGCATATGCAAAAATTGACGAGGAGTCGTTAACGAAGTTGCAACAGAAATTTCTAGACTTTCTCAA....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTTTTGCAGAAAAACCAGGGTACTTTCTTCCTATCTGCTTATGATGGTCCTAAAGCCTCTGAAGGAAATGGCAAGGATAAAGAAAGCTGAGCAGTCTACCAATTTAGCTAGAATTAGAATGAGTCGCATCAGAAGCATTGGCGGTATTTCTTGAACACGCCAATATGCCTACTGGTGATGCCCGCAATTATAGGGCAAACTCTTTGTTGTTGTGTGTGTGATCTGTATCAGTAGATCATTTTTTATTCCTGGAGAACTATTCATTTGCAACTTATATAGTCAGGTGATCAACTTTCGGTAGGAGGTTCTGCCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0017H17-A4Bcr/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E314350" ref_strand="+" ref_description="SGN-E314350 [cTOA-21-H18]">
      <seq>acgttcagcaccggcaaaacccaaaagctcagctgatgttaaactggacaaggaagaaactaagagcaatgttccaaaagggaaaaagcgcaaaactgactcaggcgctgagaagggcaatgtatctgtagagaaacttgtgaagattcagattccatctactttgaagaagcaactagttgatgattgggagttcatcatgcaccagaataagcttgtgaagctcccacgatctcctactgtggatgatatattgaccaagtaccttgaataccgatccaaaaaggacgggatgatgactgattcagttggggagatactgaatggaattcgatgctattttgacaaagcactgcctgcacttttattgtacaagaaggagcgccaacagtatcatgaagcagtttcagataatgtctctccatctagtgtatatggtgctgaacatctattgcgcctttttgtaaaattgcccgagttgattgcatatgcaaaaattgacgaggagtcgttaacgaagttgcaacagaaatttctagactttctcaagtttttgcagaaaaaccagggtactttcttcctatctgcttatgatggtcctaaagcctctgaaggaaatggcaaggataaagaaagctgagcagtct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0017H17-A4Bcr/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02SLe0017H17.1" temp_strand="-" temp_description="C02SLe0017H17.1  AC215447.2 htgs_phase:3 submitted_to_sgn_as:C02SLe0017H17 sequenced_by:kribb upload_account_name:korea">
        <position start="14074" stop="6812"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="13774" g_stop="13740" g_length="35"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="35" r_length="35" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="13739" i_stop="13131" i_length="609">
            <donor d_prob="0.996" d_score="0.00"/>
            <acceptor a_prob="0.968" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="13130" g_stop="13095" g_length="36"/>
          <reference_exon_boundary r_type="cDNA" r_start="36" r_stop="71" r_length="36" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="13094" i_stop="11132" i_length="1963">
            <donor d_prob="0.937" d_score="0.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="11131" g_stop="11091" g_length="41"/>
          <reference_exon_boundary r_type="cDNA" r_start="72" r_stop="112" r_length="41" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="11090" i_stop="10554" i_length="537">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="10553" g_stop="10452" g_length="102"/>
          <reference_exon_boundary r_type="cDNA" r_start="113" r_stop="214" r_length="102" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="10451" i_stop="9761" i_length="691">
            <donor d_prob="0.991" d_score="1.00"/>
            <acceptor a_prob="0.989" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="9760" g_stop="9681" g_length="80"/>
          <reference_exon_boundary r_type="cDNA" r_start="215" r_stop="294" r_length="80" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="9680" i_stop="8665" i_length="1016">
            <donor d_prob="0.972" d_score="1.00"/>
            <acceptor a_prob="0.951" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="8664" g_stop="8495" g_length="170"/>
          <reference_exon_boundary r_type="cDNA" r_start="295" r_stop="464" r_length="170" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="8494" i_stop="8163" i_length="332">
            <donor d_prob="0.868" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="8162" g_stop="8078" g_length="85"/>
          <reference_exon_boundary r_type="cDNA" r_start="465" r_stop="549" r_length="85" r_score="1.000"/>
        </exon>
        <intron i_serial="7">
          <gDNA_intron_boundary i_start="8077" i_stop="7210" i_length="868">
            <donor d_prob="0.993" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="8">
          <gDNA_exon_boundary g_start="7209" g_stop="7112" g_length="98"/>
          <reference_exon_boundary r_type="cDNA" r_start="550" r_stop="647" r_length="98" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLe0017H17.1" gen_strand="-" ref_id="SGN-E314350" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>647</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0017H17.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E314350" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="13774" e_stop="13740"/>
          <exon e_start="13130" e_stop="13095"/>
          <exon e_start="11131" e_stop="11091"/>
          <exon e_start="10553" e_stop="10452"/>
          <exon e_start="9760" e_stop="9681"/>
          <exon e_start="8664" e_stop="8495"/>
          <exon e_start="8162" e_stop="8078"/>
          <exon e_start="7209" e_stop="7112"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACGTTCAGCACCGGCAAAACCCAAAAGCTCAGCTGGTAAGTTTTCTCTAGGTTTATATTAGAATGAGGGCTATAGATGACCATTTTAGGTAGTTCTCTGGTCATGGAAATACTTTCTTGCATAACCATTTTTAAGTAGTTCTCAGCTGGTATGTTTTCTCTAGGTTTATATTGGAATGAAGGCTATAGATGACCATTGTAGGTAGTTCTCTGGTCATGGAAATACTTCCTTGCGTAACATATCGAAATTTATAACACTTTTCAGGTATCAGTATTACTCCTGATGCCTTTTATAGAAGTCGAAAGTCTATTTGGAGAATTAGCTGATTGAAATATAATAGTCGTTTGAACCAAATTCCAGAAGATTAGTTTCTTAATGATGTTTGGTTATGTGACTCGGAAATATGGAAACGTCACCAAAGTTAAGGTTGTAAATCCTCTTTAGCATAACTTGACATACCAACATGTACTCTTTTTGTTGTTCTAACTCATGTTTTCAATTTCGAAGTTCTCTTTGCATATCTAACAGTGAATGTTAATTACAAAACCAAATGCCTGTCTCCTCTGAAGGAAAGATGATGTAACGGAGTCAAGGGTTAGGTCTAGGGATTGAATTCTTGTTAGTAACTTACTTTTCATTTGCAGATGTTAAACTGGACAAGGAAGAAACTAAGAGCAATGGTATGCCATCTTATGATTTTGAATTTTGTGCTTCTCCTTGAGCTCTTCTGCATTATTTGTTGGGGGTGGATGGTAATTATGTGGCTTGGACATTATTCCTCCTTGAATTGTGTTTGCTTTGAGTTTTTTTTTGTTGACACTAGTAACATTTTGTGTTTGCTTTGAGTTAATTTAGGCCTGATAGTAATAATAAGGCCAGAAGGTAGGGATTCCCACCGTCCTCCACATAAGTAGAGTAGGTTGGTCTGTTAGATATAAATTCCCTTTTTTGTTGGATAAGGAATTTTTTTCCTTATTTTTGACTCTCCATTTAACTTTTGTTTTTAAAGAAGCTGCATAACCCTTCCCAAAGACCTCATTCTGAAAGCCTCCCAGTTCCCTTTCCAAATTAAAGAAATGGGGCACTGATTAATAAAGCATCCTTGACCTCAACCGTAACTGCGGGTACTGATGAATCAGGTATCCTGAACCTCAACCCTAACTTCTTTAGAACAATTATTGCTGTGTGTTGCTTTATTAGTTTCATTTTTAGTTGTAAAACTAATGTTTAGGAAGTAGTCTTCTTGTATATACTGGAAATCTATCCCAAACCTAATTATTATGTATTTTTTGACATAATATACTTTATTGATTGTCTTTGTCAAAAAAATATACTTTATTGATTATATTTAGGCAATGTACATTTTTCTCAGAAAAGTTAAATCTCATTTTTTTAAGCCGCCTTAATCAAATGTTCCACTCAGAAACACCATATAATCTAGTTGTATTTCAATTTGTCTAGCAAATCAATTAGAAAGCTGTAGTAATTGCATTTATGAGGGTATAAATGAAGCATGCTGGATGAATACCTTGATAAGACACAGTTTTAGACTTAAGTATGGATTATGTGACTTGGAAGACGCAATGCATATACTAGGATGTTAAGCATAGGTGGAAGAAAAATAAGAAAAGGAGGAAAATCAGAAGGATTGCCAAGAAGCAAGATATGATTGCATTGGAGAAGTAATGATTGTCTTTCCTATAACAAAAGAAAGTATAAGGGCAACAAAGGCCATTACCTTAAATTTTCAATAGTTGACATGCCTTTGACTGAGTATACACATAGAATGTGGAGGCTCGTCTTTCTGTTTGTAAAATTAATCAGGGATCACAAGAAACACAAAGAATATGGAAGAAAATTGGTCATTACTAGAATTTTGTGCCTCGCTTTCTTCTTTGGCGAGGCTTGCTCATGCATATTTTTCATGTTCTACCATAGCAAAGAGACAACTTCTTTCTTCTTGCCTTTGCATATGCTCTAAGAATGCATGTTCTGATCACTATTTACTACTATGATTGCTAGCTCATACTCGTTATCTAGTTTAAATTTTGGTATTAGAGATCTAATTGAGGTAAAAGATTTGACTCTTCGACTGGCTTTTGGACATTTAACTGATGGAAGCTGTACCCGGGCAGTACATAAAATTAGTATAGCTCAATCAAAGTATCCAGTTCCATTCAAATCCCCTGATGATAACTTATACAAAAGGTTTTGGGTTATCAGATCAAATCAAATGTTAAAGACCTTGATAACTGTGGAGAATCCCACTCAAAATTCTCACTGTTGTGGGTAACATTCATGTGCAGTGGATACGATTATTAGGATACATGCAAGATGGGAAGGTAAAAGTCAAAACCTACAGTGTTCTCCTTAACTTTCCTATTGGCGTTTGTCTACTATGGACACTGTAATATTGTAGATGAAATAGCCTTGAGTTGGTCAAGGTGTTGACTTTGTTCTAGTCATATCATGCTATGCTGGAGTATACCTGTTTTATCTTAGGATTACGTATTACCAAATTAGACAGAAAGATTCTGTTAAGTAAGGTCTATTTGATCTGCTTATAAGAAAATCTAGTCTGTTAGTTTCTATTGGGGATTTGCTTATAAGAAATTTATCTTTAAAATTGAACTTTTCTTGCAGTTCCAAAAGGGAAAAAGCGCAAAACTGACTCAGGCGCTGAGGTTTGCTTAATTCTAGACTCTATAACTCACTGTTTCTTTTTCCTTTTCGAGGTAATCGTTGACACTCTTCTTGTGTAGAGGCCCAACATTTACTTCCAAATAACATTGTTGGACTAAATCGTTATGTAAAGTTATTTACATTCTGCAGAATACTCCATTAATAACACCTCCATTTTAGTCATATTAAGCTGTGTGATTTAGGCACCACTATCCCCTCCCTCTCTAATCACACTTCTTTTTCCTTTGAAGACATTTTTTGTTGAAAAGTTCCTCAGCTATTATTTAAGTGCTTCAATCACATCGAAGGAAGTGATTTAAAAAGACCTGCAATTGCTTGATCAATACAAACTTAGGTAAAAATAGGGACAATGGAAGAAAAAGATCCATGTAGGTGATAGCTATTAGTTGAGGATAGGTATTAGACTCGTATGGAACTTCCTTTTTTTTTTCTGGTAATGCGTAGTAGTAGTAGTTGTTTTTGTTGTATAGTATTAGTGTTTGAAAGATATTGATTTGTAACTCGGTCATTGATGGCAGAAGGGCAATGTATCTGTAGAGAAACTTGTGAAGATTCAGATTCCATCTACTTTGAAGAAGCAACTAGTTGATGATTGGGAGTTCATCATGCACCAGAATAAGGTATATATGTGTAGGATAATGACTAAGTCTATATGTCGTATTTTCTGTTGGCAAGCTCATTAGCAGTTGAAGACACAAGTGACTCAAAAAGATCTTGGATTCCTCTGTTTCGATTTCTAGTGTTTCATGGAGATTGACTCCTATAAAAAAAAAATTTATCAAGTAATATAGTTCCAGTCATATTATTAAGGTTGCTTAGCGGGAGCCGTGCTCCAACAAGAACCGAGTCCTAGTATTGGACACATTGTGGATGTAAGTAAAGCGTTGTCTTGTAAGGTTGATGGATTGGAGCATAGATGGAAAATGGGAAACCCATAATAGAGCAATCAACCAGCAGTAGAATTGCTGACTCATCTTATCTCAACTTGAAACCCCCCCCCCCACACACACACAAAAGGCGCAGACAAATAGATAAGGGCGATGCCTAATTTGCTTTTGAGATCTTTGCTGATTTACTAGACTAAGTCCCTCCCAGGCCCAGCTAATCTGAGCAGGAATTTTATGAGATTAAATCGTACTGGATAATATGACACTTATCTGTCCTGCTACATGTCTGTATTCTTCCCTACAAGTGCATGCTGGAGTTGATCAAATTTCTTTTCTTCATTTTGTTCAGACTATGTTGGTTCTTAGTGTTGGTTGCTAAATACAATATTGCCAGTGATGATATCTGATGTGTTATTCTTAACAGCTTGTGAAGCTCCCACGATCTCCTACTGTGGATGATATATTGACCAAGTACCTTGAATACCGATCCAAAAAGGACGGGATGTAAGTTCACTGCCCTTTTCTTTTCATGTAAGGGTGGATTTATTGCTGAGCTGTGGTTATGCATCTATGTTTCATTCTGGTGTCCTGTAATTTGCATGGTCAATGTTGGAATATATTGGTTCTACCCGGTATTTGTACCGGTAAGAGGTAAGAGGTAACAGGTATCCGGTAGAATTCGTTAAGGTGCGCACAAGCTGGCCTAAAAACCACCATCATAAAAAAGAAACATTTGAAAGAACTAATTGCGAAATTGGTTCTTTCAAATATTTCTTTTTTATGATGGTGGTGTTTGGGCCAGCTTGTGGGCACCTTGACGAATTCTACTGGACACATGTTACCTCCTACCGGTACAAATATCGGGTAGCTTTGCCCACCAAGGCTTGGGCAAATGGGAAGAAATGACCTAGTGCTTTTTGTCTCGATTGGAGTTGAAGTTGAGACCTCATGGTTCTCCCCTACTTCATGGAGCACTAGTTCATTATCTTTGGGGGAAAACAAGTCTTTTAACACCTTTGGGGGCGATATTGGTTCTTTCAAAACTTAGCTTTTAACTCTGTCAGTAAAACTCATGCACGTTTAAGGACCTATAGTCTAGTGTAGGATATTGTCGATTCACTAAATTATGCTTTCTTGATATCAAGTTGGTAGTTGATTTATTGCTAAATGGTAAGTTTTTTCACCAAAAAAAAGCAAGTTACTTTTGATCTTGTTGAACTGCTTCTTATCGGATTCATATACACAACCAGTTAGCTTCAACTCCTATGTGTCTGCATTAAGTCATTGGAAATTACTACAGTTTCAGAATAGACCGAGTTTCCCATCTTGTTGACTCCTATTTGCAGAAGTAGGTAATATCAAAGGCCAACATTATTTGCAGAAGTATATCATCTCTGCTGGCCACAAGTACCTTTGCATGAGTAGTCAATGCATACTGAGTGTATTTAGTATGGCATAAAATGACTTTGGAGGTATAGTTCATTTAATAAAAATGCCTTCCAAATGTTTGATCCTCGCAGGATGACTGATTCAGTTGGGGAGATACTGAATGGAATTCGATGCTATTTTGACAAAGCACTGCCTGCACTTTTATTGTACAAGAAGGAGCGCCAACAGTATCATGAAGCAGTTTCAGATAATGTCTCTCCATCTAGTGTATATGGTGCTGAACATCTATTGCGCCTTTTTGGTATGAAAAAGTACCAAGTGTTCATGTTATTTAATTGACCCCAAGAGAAAGATATGTACCTTAGAAAATCTCATGTTGCAGAGGATAAAACAGTATAAATTTCATATGTTTTTCTGTATGCTTGTATATCTTTACTTAATCAAAAGATATTTTCTCACAAGATTGTAAAGTCTTAATTTGTTTGCTGATGTTGCAGTTGAATCAAAAAAAAATTGTTTAAAGTTCGGTTTTTTCAGAGGGCAAGCCTATATGAATGTTCTATCATGTTCCGTCAAATTATCAAAAGATATTTTCTTACTAGATTGTATTTAATTTGTTTGCTGATGTTGCAGTAAAATTGCCCGAGTTGATTGCATATGCAAAAATTGACGAGGAGTCGTTAACGAAGTTGCAACAGAAATTTCTAGACTTTCTCAAGTATATGCTCTTTTCCTTTACTTCCTTCTGGACAAGATTATTGTTATTATTATTATTATTATTATTATGTTATGGAATTATGTTGTGATTGAATTGCTACCTTGAAACAGCCCACAAGCTGATGTGTTCACTGTGGGAGCTGTGTAAGGATGGTGCAATTTGATAACTGCTGCATTGGCTGGCCTTACCTAGTCTTTTTTGACTATTGGTCTAATCACATGATTCTCTTCTGGAAAGCACCAGCAAGTTCACTAGCTTATTTTGGATTCCTTTTTTAACTTCCATGACAATTTTCAAGAAAACATCTTAAGCATTGAGAATATTTAACAATATTCATCTTCTTCTTTAATTCTGAATATTAAGCTAGCGCAGCAATTTCACAGTGAATTTAACCACTATGGTGAAGTGCCTGAAAAAGCAGTTGCATCAGATTTTGATGAAAAGAAGGGTTTTTAGGTTATCTTAAAAGGGAGAAGCCCATTACATGTAGCATCCCACGTTCACGCAGGGCCCCAGGGTAGAGCCGCACCCCAATGGGGTGTTTTAGTTTACCTTACCAGAAAAAGGGGGGTGGGGTGGGGGTGGGGGATGTTCACTTAAATCATACCTTATCAAAAGATGAAAAAGAAAAGGGAAGAGCGTCTTAGTATTGTAACTGATGAAAAGTGAAAATGAATAAAAGATATCCATATGCTTTCTGCCTTCTGTAAGAACCAGCTCAACAGCAACATTAAGTTAAAGAATTCTATTGTACAATTTTTCTGGCTGAGATTTGGTGCTTTGAGGGTGACTTGGATTGAGGAAACACCTATTATGTTGATGTATCATCTTGCAAATGAGCTTTTACCTTGTGCTTGTGTGATTGCAGGTTTTTGCAGAAAAACCAGGGTACTTTCTTCCTATCTGCTTATGATGGTCCTAAAGCCTCTGAAGGAAATGGCAAGGATAAAGAAAGCTGAGCAGTCT</genome_strand>
        <mrna_strand>ACGTTCAGCACCGGCAAAACCCAAAAGCTCAGCTG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATGTTAAACTGGACAAGGAAGAAACTAAGAGCAATG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTCCAAAAGGGAAAAAGCGCAAAACTGACTCAGGCGCTGAG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAGGGCAATGTATCTGTAGAGAAACTTGTGAAGATTCAGATTCCATCTACTTTGAAGAAGCAACTAGTTGATGATTGGGAGTTCATCATGCACCAGAATAAG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTTGTGAAGCTCCCACGATCTCCTACTGTGGATGATATATTGACCAAGTACCTTGAATACCGATCCAAAAAGGACGGGAT........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATGACTGATTCAGTTGGGGAGATACTGAATGGAATTCGATGCTATTTTGACAAAGCACTGCCTGCACTTTTATTGTACAAGAAGGAGCGCCAACAGTATCATGAAGCAGTTTCAGATAATGTCTCTCCATCTAGTGTATATGGTGCTGAACATCTATTGCGCCTTTTTG............................................................................................................................................................................................................................................................................................................................................TAAAATTGCCCGAGTTGATTGCATATGCAAAAATTGACGAGGAGTCGTTAACGAAGTTGCAACAGAAATTTCTAGACTTTCTCAA....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTTTTGCAGAAAAACCAGGGTACTTTCTTCCTATCTGCTTATGATGGTCCTAAAGCCTCTGAAGGAAATGGCAAGGATAAAGAAAGCTGAGCAGTCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0017H17-A4Bcr/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E309907" ref_strand="+" ref_description="SGN-E309907 [cLEZ-10-G4]">
      <seq>acgaatggagatacttcgttcattaccttttgggatgaatgggtaggagctgaccgcttgatgaagcacacagaagacaacgtcttgaagcagcaggccctggacaagaagcagggcatggagaaaagtactaaatctggacgttcagcaccggcaaaacccaaaagctcagctgatgttaaactggacaaggaagaaactaagagcaatgaagggcaatgtatctgtagagaaacttgtgaagattcagattccatctactttgaagaagcaactagttgatgattgggagttcatcatgcaccagaataagcttgtgaagctcccacgatctcctactgtggatgatatattgaccaagtaccttgaataccgatccaaaaaggacgggatgatgactgattcacttggggagatactgaatggaattcgatgctattttgac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0017H17-A4Bcr/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02SLe0017H17.1" temp_strand="-" temp_description="C02SLe0017H17.1  AC215447.2 htgs_phase:3 submitted_to_sgn_as:C02SLe0017H17 sequenced_by:kribb upload_account_name:korea">
        <position start="15664" stop="8313"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="15364" g_stop="15336" g_length="29"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="29" r_length="29" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="15335" i_stop="13886" i_length="1450">
            <donor d_prob="0.997" d_score="0.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="13885" g_stop="13740" g_length="146"/>
          <reference_exon_boundary r_type="cDNA" r_start="30" r_stop="175" r_length="146" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="13739" i_stop="13131" i_length="609">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.968" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="13130" g_stop="13095" g_length="36"/>
          <reference_exon_boundary r_type="cDNA" r_start="176" r_stop="211" r_length="36" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="13094" i_stop="10554" i_length="2541">
            <donor d_prob="0.937" d_score="0.00"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="10553" g_stop="10452" g_length="102"/>
          <reference_exon_boundary r_type="cDNA" r_start="212" r_stop="313" r_length="102" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="10451" i_stop="9761" i_length="691">
            <donor d_prob="0.991" d_score="1.00"/>
            <acceptor a_prob="0.989" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="9760" g_stop="9681" g_length="80"/>
          <reference_exon_boundary r_type="cDNA" r_start="314" r_stop="393" r_length="80" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="9680" i_stop="8665" i_length="1016">
            <donor d_prob="0.972" d_score="1.00"/>
            <acceptor a_prob="0.951" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="8664" g_stop="8613" g_length="52"/>
          <reference_exon_boundary r_type="cDNA" r_start="394" r_stop="445" r_length="52" r_score="0.981"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLe0017H17.1" gen_strand="-" ref_id="SGN-E309907" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>445</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0017H17.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E309907" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="15364" e_stop="15336"/>
          <exon e_start="13885" e_stop="13740"/>
          <exon e_start="13130" e_stop="13095"/>
          <exon e_start="10553" e_stop="10452"/>
          <exon e_start="9760" e_stop="9681"/>
          <exon e_start="8664" e_stop="8613"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACGAATGGAGATACTTCGTTCATTACCTTGTAAGTTTAAATTTATATCTTCTTTCACCATATGCTTTACATATGACAATTAAATTTGGTACTTCTTTAGTTAAAAGATGTGAGAAAGCTTGTAGCATAGCCTTACATTATTACCTTGTTTAAAATTTTTTCAATATTCTTAATGATATCGAGAAATAATACTCCTTTTATTTATTTTAATTTACAGGGCTGGAACAAAAAGTGAGTTTATGAAGTTACTTGTAGAAAGTTCTTAATTCAAGAGTATCTTAAATTGCTAGTCACATCAGGATTGAAAGGTTGACCAACTCATTTGAATGTTGAATGTGCTGCCTTAAAAGTTTTTTCTTTGAATGTTCTGCTCCGAAGGAGCTTGGCCTTGAGCAAGAGGCATAGAGTAATTTGATGCTTCCTTGTTGATTATGGTGATTATTTTACAAATTATATGTGGAAGGTTGTGCTGCTCTGGATTTAAAGTGCAATTGTGAATACATAATTTTGATTTGCATAGCATCAGGTAGCACAATGAATTTGGTCTTTGGATATTAATAGCGAAGTTTTATCATTTTAACTACATGCTCCTTTTGTTTCAAATTTAGTGTTCATCTCTCCATTTTGATCTTTTGGGAGAATATTTTCATTTTCTGTAAATGGGAATGATTCGAAGATTTAATACTTTACATGGGGATCTACCTTTACTCTGATCCTTAAGCACTTTCTTTATGTTATTCTAACAAACATTTGCCAATATTTCAAATAATCCTAATTCCTATCTTCCCATATAAATTCAAACAATGATGTTGAAATAGAAAAGGACTGATAACAAGTTCTCTCAGCTTTTTTGCCTGTGTAATAAGGACTAATTCAATAGACATTCATGATTTCACTGTTCTCCCCCTGTCTTATTGTGCATGGTACTTTTACTATTTAGATACTCAAGCTCTTTCTTTGGACTACAGTTTTTTTACAATATTTTTAATTTAAAAAATCATTTACAAATGTTTGTAACTTCGTAAATTTATTCAAAAAAATTAAGCAATTGATGGTTAAATTTTTGCTCTGAAATTACATTCTATGACTTGGTACTCCAAACCCCATAAACTCTTTTCAGCGACAGGAAATAATAGCTATTTTACATTGCTGTGTACGTCTGGTTCTGCAGCAAATGTGAAGCTAGTTTTTTGTGTACTTCAATCTGAATTTTGGATGTTGTAGTTGTTAACTCTCTGATTTAAAAATAATGATTTACTTTCTTTTTTAGTCTGTTTCAGAAAGATTGACCCATTTCCTTTTTTGGCAACACTTTAGTTTTAGCTTTCCATGTAGCATGTTTAGGAACATAAGATTAGAGGACATTTTGGTACATTTGACATAAATTAAACTAGGTCCTTTTTTTTTAAACAGAGGGAGTATTTGTTGATTGTAAGTATATTCTGCAAACCCTAATTCCTGAAACTATGTCTTGTAACAGTTGGGATGAATGGGTAGGAGCTGACCGCTTGATGAAGCACACAGAAGACAACGTCTTGAAGCAGCAGGCCCTGGACAAGAAGCAGGGCATGGAGAAAAGTACTAAATCTGGACGTTCAGCACCGGCAAAACCCAAAAGCTCAGCTGGTAAGTTTTCTCTAGGTTTATATTAGAATGAGGGCTATAGATGACCATTTTAGGTAGTTCTCTGGTCATGGAAATACTTTCTTGCATAACCATTTTTAAGTAGTTCTCAGCTGGTATGTTTTCTCTAGGTTTATATTGGAATGAAGGCTATAGATGACCATTGTAGGTAGTTCTCTGGTCATGGAAATACTTCCTTGCGTAACATATCGAAATTTATAACACTTTTCAGGTATCAGTATTACTCCTGATGCCTTTTATAGAAGTCGAAAGTCTATTTGGAGAATTAGCTGATTGAAATATAATAGTCGTTTGAACCAAATTCCAGAAGATTAGTTTCTTAATGATGTTTGGTTATGTGACTCGGAAATATGGAAACGTCACCAAAGTTAAGGTTGTAAATCCTCTTTAGCATAACTTGACATACCAACATGTACTCTTTTTGTTGTTCTAACTCATGTTTTCAATTTCGAAGTTCTCTTTGCATATCTAACAGTGAATGTTAATTACAAAACCAAATGCCTGTCTCCTCTGAAGGAAAGATGATGTAACGGAGTCAAGGGTTAGGTCTAGGGATTGAATTCTTGTTAGTAACTTACTTTTCATTTGCAGATGTTAAACTGGACAAGGAAGAAACTAAGAGCAATGGTATGCCATCTTATGATTTTGAATTTTGTGCTTCTCCTTGAGCTCTTCTGCATTATTTGTTGGGGGTGGATGGTAATTATGTGGCTTGGACATTATTCCTCCTTGAATTGTGTTTGCTTTGAGTTTTTTTTTGTTGACACTAGTAACATTTTGTGTTTGCTTTGAGTTAATTTAGGCCTGATAGTAATAATAAGGCCAGAAGGTAGGGATTCCCACCGTCCTCCACATAAGTAGAGTAGGTTGGTCTGTTAGATATAAATTCCCTTTTTTGTTGGATAAGGAATTTTTTTCCTTATTTTTGACTCTCCATTTAACTTTTGTTTTTAAAGAAGCTGCATAACCCTTCCCAAAGACCTCATTCTGAAAGCCTCCCAGTTCCCTTTCCAAATTAAAGAAATGGGGCACTGATTAATAAAGCATCCTTGACCTCAACCGTAACTGCGGGTACTGATGAATCAGGTATCCTGAACCTCAACCCTAACTTCTTTAGAACAATTATTGCTGTGTGTTGCTTTATTAGTTTCATTTTTAGTTGTAAAACTAATGTTTAGGAAGTAGTCTTCTTGTATATACTGGAAATCTATCCCAAACCTAATTATTATGTATTTTTTGACATAATATACTTTATTGATTGTCTTTGTCAAAAAAATATACTTTATTGATTATATTTAGGCAATGTACATTTTTCTCAGAAAAGTTAAATCTCATTTTTTTAAGCCGCCTTAATCAAATGTTCCACTCAGAAACACCATATAATCTAGTTGTATTTCAATTTGTCTAGCAAATCAATTAGAAAGCTGTAGTAATTGCATTTATGAGGGTATAAATGAAGCATGCTGGATGAATACCTTGATAAGACACAGTTTTAGACTTAAGTATGGATTATGTGACTTGGAAGACGCAATGCATATACTAGGATGTTAAGCATAGGTGGAAGAAAAATAAGAAAAGGAGGAAAATCAGAAGGATTGCCAAGAAGCAAGATATGATTGCATTGGAGAAGTAATGATTGTCTTTCCTATAACAAAAGAAAGTATAAGGGCAACAAAGGCCATTACCTTAAATTTTCAATAGTTGACATGCCTTTGACTGAGTATACACATAGAATGTGGAGGCTCGTCTTTCTGTTTGTAAAATTAATCAGGGATCACAAGAAACACAAAGAATATGGAAGAAAATTGGTCATTACTAGAATTTTGTGCCTCGCTTTCTTCTTTGGCGAGGCTTGCTCATGCATATTTTTCATGTTCTACCATAGCAAAGAGACAACTTCTTTCTTCTTGCCTTTGCATATGCTCTAAGAATGCATGTTCTGATCACTATTTACTACTATGATTGCTAGCTCATACTCGTTATCTAGTTTAAATTTTGGTATTAGAGATCTAATTGAGGTAAAAGATTTGACTCTTCGACTGGCTTTTGGACATTTAACTGATGGAAGCTGTACCCGGGCAGTACATAAAATTAGTATAGCTCAATCAAAGTATCCAGTTCCATTCAAATCCCCTGATGATAACTTATACAAAAGGTTTTGGGTTATCAGATCAAATCAAATGTTAAAGACCTTGATAACTGTGGAGAATCCCACTCAAAATTCTCACTGTTGTGGGTAACATTCATGTGCAGTGGATACGATTATTAGGATACATGCAAGATGGGAAGGTAAAAGTCAAAACCTACAGTGTTCTCCTTAACTTTCCTATTGGCGTTTGTCTACTATGGACACTGTAATATTGTAGATGAAATAGCCTTGAGTTGGTCAAGGTGTTGACTTTGTTCTAGTCATATCATGCTATGCTGGAGTATACCTGTTTTATCTTAGGATTACGTATTACCAAATTAGACAGAAAGATTCTGTTAAGTAAGGTCTATTTGATCTGCTTATAAGAAAATCTAGTCTGTTAGTTTCTATTGGGGATTTGCTTATAAGAAATTTATCTTTAAAATTGAACTTTTCTTGCAGTTCCAAAAGGGAAAAAGCGCAAAACTGACTCAGGCGCTGAGGTTTGCTTAATTCTAGACTCTATAACTCACTGTTTCTTTTTCCTTTTCGAGGTAATCGTTGACACTCTTCTTGTGTAGAGGCCCAACATTTACTTCCAAATAACATTGTTGGACTAAATCGTTATGTAAAGTTATTTACATTCTGCAGAATACTCCATTAATAACACCTCCATTTTAGTCATATTAAGCTGTGTGATTTAGGCACCACTATCCCCTCCCTCTCTAATCACACTTCTTTTTCCTTTGAAGACATTTTTTGTTGAAAAGTTCCTCAGCTATTATTTAAGTGCTTCAATCACATCGAAGGAAGTGATTTAAAAAGACCTGCAATTGCTTGATCAATACAAACTTAGGTAAAAATAGGGACAATGGAAGAAAAAGATCCATGTAGGTGATAGCTATTAGTTGAGGATAGGTATTAGACTCGTATGGAACTTCCTTTTTTTTTTCTGGTAATGCGTAGTAGTAGTAGTTGTTTTTGTTGTATAGTATTAGTGTTTGAAAGATATTGATTTGTAACTCGGTCATTGATGGCAGAAGGGCAATGTATCTGTAGAGAAACTTGTGAAGATTCAGATTCCATCTACTTTGAAGAAGCAACTAGTTGATGATTGGGAGTTCATCATGCACCAGAATAAGGTATATATGTGTAGGATAATGACTAAGTCTATATGTCGTATTTTCTGTTGGCAAGCTCATTAGCAGTTGAAGACACAAGTGACTCAAAAAGATCTTGGATTCCTCTGTTTCGATTTCTAGTGTTTCATGGAGATTGACTCCTATAAAAAAAAAATTTATCAAGTAATATAGTTCCAGTCATATTATTAAGGTTGCTTAGCGGGAGCCGTGCTCCAACAAGAACCGAGTCCTAGTATTGGACACATTGTGGATGTAAGTAAAGCGTTGTCTTGTAAGGTTGATGGATTGGAGCATAGATGGAAAATGGGAAACCCATAATAGAGCAATCAACCAGCAGTAGAATTGCTGACTCATCTTATCTCAACTTGAAACCCCCCCCCCCACACACACACAAAAGGCGCAGACAAATAGATAAGGGCGATGCCTAATTTGCTTTTGAGATCTTTGCTGATTTACTAGACTAAGTCCCTCCCAGGCCCAGCTAATCTGAGCAGGAATTTTATGAGATTAAATCGTACTGGATAATATGACACTTATCTGTCCTGCTACATGTCTGTATTCTTCCCTACAAGTGCATGCTGGAGTTGATCAAATTTCTTTTCTTCATTTTGTTCAGACTATGTTGGTTCTTAGTGTTGGTTGCTAAATACAATATTGCCAGTGATGATATCTGATGTGTTATTCTTAACAGCTTGTGAAGCTCCCACGATCTCCTACTGTGGATGATATATTGACCAAGTACCTTGAATACCGATCCAAAAAGGACGGGATGTAAGTTCACTGCCCTTTTCTTTTCATGTAAGGGTGGATTTATTGCTGAGCTGTGGTTATGCATCTATGTTTCATTCTGGTGTCCTGTAATTTGCATGGTCAATGTTGGAATATATTGGTTCTACCCGGTATTTGTACCGGTAAGAGGTAAGAGGTAACAGGTATCCGGTAGAATTCGTTAAGGTGCGCACAAGCTGGCCTAAAAACCACCATCATAAAAAAGAAACATTTGAAAGAACTAATTGCGAAATTGGTTCTTTCAAATATTTCTTTTTTATGATGGTGGTGTTTGGGCCAGCTTGTGGGCACCTTGACGAATTCTACTGGACACATGTTACCTCCTACCGGTACAAATATCGGGTAGCTTTGCCCACCAAGGCTTGGGCAAATGGGAAGAAATGACCTAGTGCTTTTTGTCTCGATTGGAGTTGAAGTTGAGACCTCATGGTTCTCCCCTACTTCATGGAGCACTAGTTCATTATCTTTGGGGGAAAACAAGTCTTTTAACACCTTTGGGGGCGATATTGGTTCTTTCAAAACTTAGCTTTTAACTCTGTCAGTAAAACTCATGCACGTTTAAGGACCTATAGTCTAGTGTAGGATATTGTCGATTCACTAAATTATGCTTTCTTGATATCAAGTTGGTAGTTGATTTATTGCTAAATGGTAAGTTTTTTCACCAAAAAAAAGCAAGTTACTTTTGATCTTGTTGAACTGCTTCTTATCGGATTCATATACACAACCAGTTAGCTTCAACTCCTATGTGTCTGCATTAAGTCATTGGAAATTACTACAGTTTCAGAATAGACCGAGTTTCCCATCTTGTTGACTCCTATTTGCAGAAGTAGGTAATATCAAAGGCCAACATTATTTGCAGAAGTATATCATCTCTGCTGGCCACAAGTACCTTTGCATGAGTAGTCAATGCATACTGAGTGTATTTAGTATGGCATAAAATGACTTTGGAGGTATAGTTCATTTAATAAAAATGCCTTCCAAATGTTTGATCCTCGCAGGATGACTGATTCAGTTGGGGAGATACTGAATGGAATTCGATGCTATTTTGAC</genome_strand>
        <mrna_strand>ACGAATGGAGATACTTCGTTCATTACCTT..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTGGGATGAATGGGTAGGAGCTGACCGCTTGATGAAGCACACAGAAGACAACGTCTTGAAGCAGCAGGCCCTGGACAAGAAGCAGGGCATGGAGAAAAGTACTAAATCTGGACGTTCAGCACCGGCAAAACCCAAAAGCTCAGCTG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATGTTAAACTGGACAAGGAAGAAACTAAGAGCAATG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAGGGCAATGTATCTGTAGAGAAACTTGTGAAGATTCAGATTCCATCTACTTTGAAGAAGCAACTAGTTGATGATTGGGAGTTCATCATGCACCAGAATAAG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTTGTGAAGCTCCCACGATCTCCTACTGTGGATGATATATTGACCAAGTACCTTGAATACCGATCCAAAAAGGACGGGAT........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATGACTGATTCACTTGGGGAGATACTGAATGGAATTCGATGCTATTTTGAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0017H17-A4Bcr/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E379501" ref_strand="+" ref_description="SGN-E379501 [TUS-3-E7]">
      <seq>aaaggttcacgactcacgcgtgtagagatccagtggtcccttttttttttgaaaccgataaagaagtgggaaacaaattcctccgtcacatacggccaaaggcggaggagatactactggtcggaagtctcggataaacggaaatggttaactcaaaaaacaactcttctaccgacagcgaaaattcctccggtgacgttcccgactctaaacctagtctctactttgaaggcgagaaggttctcgcttatcatggccctcgcatctacgaagcaaaggtccaaaaagcagagctgcggaagaacgaatggagatacttcgttcattaccttggctggaacaaaaattgggatgaatgggtaggagctgaccgcttgatgaagcacacagaagacaacgtcttgaagcagcaggccctggacaagaagcagggcatggagaaaagtactaaatctggacgttcagcaccggcaaaacccaaaagctcagctgatgttaaactggacaaggaagaaactaagagcaatgttccaaaagggaaaaagcgcaaaactgactcaggcgctgagaagggcaatgtatctgtagagaaacttgtgaagattcagattccatctactttgaagaagcaactagttngatgattgggagttcatcatgcaccagaataagcttgtgaagctcccacgatctcctactgtggatgatatattgaccnagtaccttgaataccgat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0017H17-A4Bcr/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02SLe0017H17.1" temp_strand="-" temp_description="C02SLe0017H17.1  AC215447.2 htgs_phase:3 submitted_to_sgn_as:C02SLe0017H17 sequenced_by:kribb upload_account_name:korea">
        <position start="17560" stop="9397"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="17260" g_stop="16984" g_length="277"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="278" r_length="278" r_score="0.993"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="16983" i_stop="15390" i_length="1594">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.647" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="15389" g_stop="15336" g_length="54"/>
          <reference_exon_boundary r_type="cDNA" r_start="279" r_stop="332" r_length="54" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="15335" i_stop="15149" i_length="187">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.989" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="15148" g_stop="15135" g_length="14"/>
          <reference_exon_boundary r_type="cDNA" r_start="333" r_stop="346" r_length="14" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="15134" i_stop="13886" i_length="1249">
            <donor d_prob="0.000" d_score="0.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="13885" g_stop="13740" g_length="146"/>
          <reference_exon_boundary r_type="cDNA" r_start="347" r_stop="492" r_length="146" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="13739" i_stop="13131" i_length="609">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.968" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="13130" g_stop="13095" g_length="36"/>
          <reference_exon_boundary r_type="cDNA" r_start="493" r_stop="528" r_length="36" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="13094" i_stop="11132" i_length="1963">
            <donor d_prob="0.937" d_score="0.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="11131" g_stop="11091" g_length="41"/>
          <reference_exon_boundary r_type="cDNA" r_start="529" r_stop="569" r_length="41" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="11090" i_stop="10554" i_length="537">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="10553" g_stop="10452" g_length="102"/>
          <reference_exon_boundary r_type="cDNA" r_start="570" r_stop="672" r_length="103" r_score="0.980"/>
        </exon>
        <intron i_serial="7">
          <gDNA_intron_boundary i_start="10451" i_stop="9761" i_length="691">
            <donor d_prob="0.991" d_score="0.96"/>
            <acceptor a_prob="0.989" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="8">
          <gDNA_exon_boundary g_start="9760" g_stop="9697" g_length="64"/>
          <reference_exon_boundary r_type="cDNA" r_start="673" r_stop="736" r_length="64" r_score="0.984"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLe0017H17.1" gen_strand="-" ref_id="SGN-E379501" ref_strand="+">
        <total_alignment_score>0.992</total_alignment_score>
        <cumulative_length_of_scored_exons>734</cumulative_length_of_scored_exons>
        <coverage percentage="0.997" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0017H17.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E379501" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="17260" e_stop="16984"/>
          <exon e_start="15389" e_stop="15336"/>
          <exon e_start="15148" e_stop="15135"/>
          <exon e_start="13885" e_stop="13740"/>
          <exon e_start="13130" e_stop="13095"/>
          <exon e_start="11131" e_stop="11091"/>
          <exon e_start="10553" e_stop="10452"/>
          <exon e_start="9760" e_stop="9697"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAGGTTCACGACTCACGCGTGTAGAGATCCAGTGGTCCC-TTTTTTTTTGAAACCGATAAAGAAGTGGGAAACAAATTCCTCCGTCACATACGGCCAAAGGCGGAGGAGATACTACTGGTCGGAAGTCTCGGATAAACGGAAATGGTTAACTCAAAAAACAACTCTTCTACCGACAGCGAAAATTCCTCCGGTGACGTTCCCGACTCTAAACCTAGTCTCTACTTTGAAGGCGAGAAGGTTCTCGCTTATCATGGCCCTCGCATCTACGAAGCAAAGGCACGTTTCTTGTTTTTCTCTTTTCATCTTATGCAGAAATCGCTAATTTTGTTTGGGTATACCGTAATTAATTGCCGAAATTGAATGATTAGGCCTTTTATCACACGTATCTTCCTTTGGATTATTCGTGTATCTAATTTGTCTGTAACGGTTGTGTCATATCTTCTCTGATTTATGTTTGATAATTGGTTGAGATTTTTTGTCATTTTGCTTTTCTGTTTGCTGTTAGATATGCACCACTTTGCATCCGATTGTGTGATGATTTCAGGGGAACTATTATGACTTTTGGACTGTTTCATCCATATTTAATGCTAAATTGGCGTAGAATTAGAGTTGCAAATTATACTAATCCTGTCCTGTAATCCATAATTCTGTTCGTTTTTTTAGCTTTATGAATAAATTATGGATTGTCTCTACTGTTTGATGCTTTTAGGTTTGCTTTATCATCTTAACTCATTGCTCTACTGACTCTAATCTAGACTTAGGGGTCAATCTATTGATTTTTTCTGTGGACTCCACTCTCTCTGCTCTAATGTCTGTTAAGCCTTCTCAAAGATTAGGTAAACTAAACAATTGGCAGTGTCGAAGGATGTTACATATATGAACATCCTCATATAGATTGTGGAAGGGTTCCTAAATTGATTTAGCGATCTTGAGCTAGTCTCCATCATGATTTTATTTAGATAATCTGATTTGCGCCCCATAGCAAACTTTTTGGCATGATTGTTTTCACATATCATAGAAACAATTTTTAATGTCTTATATATTCAATACATTTACACTGATTTTGTATTTTTGTGCAATCCATGTAAATATGGGTTGATCTGAGTTTAAGAACTGGGATGAATTTTGGAAAATATACTTCAACTTTTGACCTATTCCAGTTACCCGATCTTCCCTGCAAATCATGTTTTTGTATGTCAAGAGAATGCAACTCTAGACAATATATGGTTCTTATACGGAGGATTGCTAGTTTCACCTCTTATAGTTATGCACTAGTGTATTTCTGACAGGATATAGTGTGTGATATGTAGGTCAGATGCACATCATGGGTTCGAATCCTACCATAGACAAAGGCCTGATATTTAAGTGGAAAAGGGTAGAGGGGCAGGTTCATTATCCACTGAGTTTTGAACCATACACCACTAGCCGTTGGAAATTTCTCAGTTATTAAAAAAAAGTACTACTCAGCTTATTGAAATTACATATTAGTGAATAATTTGAGTTGTTGGGATTAGTTTTGGCTTCGTTGATATAGGACAATTGAAGTACTAAGTTTGCAAATGTTGTTGTTATTTGTGTATTTTCTCTAAAGCTCGAACTTTACTTTGAGAATGCTTGCACTTTGCTCTTGCTTATAACTCTCAAAATCGTGTTGTTTGTTTACACTTGTGACAATTGAAAATACCAATTGTGTATAAGTTTTTTCTTACAAGAGAAAGCTTCATTTCCTCTATATGGAAAACAATTAGTGTACGGTGATATAGTGCTTGCCTTCTACAAATTGTAGCGCCCTGATGAAATCATGTTATTTAATGCTTGCTACAAGATTTTTGCGACCCTCCAATTTGATCCTTGCATTTCTTCTTTGAAGGTCCAAAAAGCAGAGCTGCGGAAGAACGAATGGAGATACTTCGTTCATTACCTTGTAAGTTTAAATTTATATCTTCTTTCACCATATGCTTTACATATGACAATTAAATTTGGTACTTCTTTAGTTAAAAGATGTGAGAAAGCTTGTAGCATAGCCTTACATTATTACCTTGTTTAAAATTTTTTCAATATTCTTAATGATATCGAGAAATAATACTCCTTTTATTTATTTTAATTTACAGGGCTGGAACAAAAAGTGAGTTTATGAAGTTACTTGTAGAAAGTTCTTAATTCAAGAGTATCTTAAATTGCTAGTCACATCAGGATTGAAAGGTTGACCAACTCATTTGAATGTTGAATGTGCTGCCTTAAAAGTTTTTTCTTTGAATGTTCTGCTCCGAAGGAGCTTGGCCTTGAGCAAGAGGCATAGAGTAATTTGATGCTTCCTTGTTGATTATGGTGATTATTTTACAAATTATATGTGGAAGGTTGTGCTGCTCTGGATTTAAAGTGCAATTGTGAATACATAATTTTGATTTGCATAGCATCAGGTAGCACAATGAATTTGGTCTTTGGATATTAATAGCGAAGTTTTATCATTTTAACTACATGCTCCTTTTGTTTCAAATTTAGTGTTCATCTCTCCATTTTGATCTTTTGGGAGAATATTTTCATTTTCTGTAAATGGGAATGATTCGAAGATTTAATACTTTACATGGGGATCTACCTTTACTCTGATCCTTAAGCACTTTCTTTATGTTATTCTAACAAACATTTGCCAATATTTCAAATAATCCTAATTCCTATCTTCCCATATAAATTCAAACAATGATGTTGAAATAGAAAAGGACTGATAACAAGTTCTCTCAGCTTTTTTGCCTGTGTAATAAGGACTAATTCAATAGACATTCATGATTTCACTGTTCTCCCCCTGTCTTATTGTGCATGGTACTTTTACTATTTAGATACTCAAGCTCTTTCTTTGGACTACAGTTTTTTTACAATATTTTTAATTTAAAAAATCATTTACAAATGTTTGTAACTTCGTAAATTTATTCAAAAAAATTAAGCAATTGATGGTTAAATTTTTGCTCTGAAATTACATTCTATGACTTGGTACTCCAAACCCCATAAACTCTTTTCAGCGACAGGAAATAATAGCTATTTTACATTGCTGTGTACGTCTGGTTCTGCAGCAAATGTGAAGCTAGTTTTTTGTGTACTTCAATCTGAATTTTGGATGTTGTAGTTGTTAACTCTCTGATTTAAAAATAATGATTTACTTTCTTTTTTAGTCTGTTTCAGAAAGATTGACCCATTTCCTTTTTTGGCAACACTTTAGTTTTAGCTTTCCATGTAGCATGTTTAGGAACATAAGATTAGAGGACATTTTGGTACATTTGACATAAATTAAACTAGGTCCTTTTTTTTTAAACAGAGGGAGTATTTGTTGATTGTAAGTATATTCTGCAAACCCTAATTCCTGAAACTATGTCTTGTAACAGTTGGGATGAATGGGTAGGAGCTGACCGCTTGATGAAGCACACAGAAGACAACGTCTTGAAGCAGCAGGCCCTGGACAAGAAGCAGGGCATGGAGAAAAGTACTAAATCTGGACGTTCAGCACCGGCAAAACCCAAAAGCTCAGCTGGTAAGTTTTCTCTAGGTTTATATTAGAATGAGGGCTATAGATGACCATTTTAGGTAGTTCTCTGGTCATGGAAATACTTTCTTGCATAACCATTTTTAAGTAGTTCTCAGCTGGTATGTTTTCTCTAGGTTTATATTGGAATGAAGGCTATAGATGACCATTGTAGGTAGTTCTCTGGTCATGGAAATACTTCCTTGCGTAACATATCGAAATTTATAACACTTTTCAGGTATCAGTATTACTCCTGATGCCTTTTATAGAAGTCGAAAGTCTATTTGGAGAATTAGCTGATTGAAATATAATAGTCGTTTGAACCAAATTCCAGAAGATTAGTTTCTTAATGATGTTTGGTTATGTGACTCGGAAATATGGAAACGTCACCAAAGTTAAGGTTGTAAATCCTCTTTAGCATAACTTGACATACCAACATGTACTCTTTTTGTTGTTCTAACTCATGTTTTCAATTTCGAAGTTCTCTTTGCATATCTAACAGTGAATGTTAATTACAAAACCAAATGCCTGTCTCCTCTGAAGGAAAGATGATGTAACGGAGTCAAGGGTTAGGTCTAGGGATTGAATTCTTGTTAGTAACTTACTTTTCATTTGCAGATGTTAAACTGGACAAGGAAGAAACTAAGAGCAATGGTATGCCATCTTATGATTTTGAATTTTGTGCTTCTCCTTGAGCTCTTCTGCATTATTTGTTGGGGGTGGATGGTAATTATGTGGCTTGGACATTATTCCTCCTTGAATTGTGTTTGCTTTGAGTTTTTTTTTGTTGACACTAGTAACATTTTGTGTTTGCTTTGAGTTAATTTAGGCCTGATAGTAATAATAAGGCCAGAAGGTAGGGATTCCCACCGTCCTCCACATAAGTAGAGTAGGTTGGTCTGTTAGATATAAATTCCCTTTTTTGTTGGATAAGGAATTTTTTTCCTTATTTTTGACTCTCCATTTAACTTTTGTTTTTAAAGAAGCTGCATAACCCTTCCCAAAGACCTCATTCTGAAAGCCTCCCAGTTCCCTTTCCAAATTAAAGAAATGGGGCACTGATTAATAAAGCATCCTTGACCTCAACCGTAACTGCGGGTACTGATGAATCAGGTATCCTGAACCTCAACCCTAACTTCTTTAGAACAATTATTGCTGTGTGTTGCTTTATTAGTTTCATTTTTAGTTGTAAAACTAATGTTTAGGAAGTAGTCTTCTTGTATATACTGGAAATCTATCCCAAACCTAATTATTATGTATTTTTTGACATAATATACTTTATTGATTGTCTTTGTCAAAAAAATATACTTTATTGATTATATTTAGGCAATGTACATTTTTCTCAGAAAAGTTAAATCTCATTTTTTTAAGCCGCCTTAATCAAATGTTCCACTCAGAAACACCATATAATCTAGTTGTATTTCAATTTGTCTAGCAAATCAATTAGAAAGCTGTAGTAATTGCATTTATGAGGGTATAAATGAAGCATGCTGGATGAATACCTTGATAAGACACAGTTTTAGACTTAAGTATGGATTATGTGACTTGGAAGACGCAATGCATATACTAGGATGTTAAGCATAGGTGGAAGAAAAATAAGAAAAGGAGGAAAATCAGAAGGATTGCCAAGAAGCAAGATATGATTGCATTGGAGAAGTAATGATTGTCTTTCCTATAACAAAAGAAAGTATAAGGGCAACAAAGGCCATTACCTTAAATTTTCAATAGTTGACATGCCTTTGACTGAGTATACACATAGAATGTGGAGGCTCGTCTTTCTGTTTGTAAAATTAATCAGGGATCACAAGAAACACAAAGAATATGGAAGAAAATTGGTCATTACTAGAATTTTGTGCCTCGCTTTCTTCTTTGGCGAGGCTTGCTCATGCATATTTTTCATGTTCTACCATAGCAAAGAGACAACTTCTTTCTTCTTGCCTTTGCATATGCTCTAAGAATGCATGTTCTGATCACTATTTACTACTATGATTGCTAGCTCATACTCGTTATCTAGTTTAAATTTTGGTATTAGAGATCTAATTGAGGTAAAAGATTTGACTCTTCGACTGGCTTTTGGACATTTAACTGATGGAAGCTGTACCCGGGCAGTACATAAAATTAGTATAGCTCAATCAAAGTATCCAGTTCCATTCAAATCCCCTGATGATAACTTATACAAAAGGTTTTGGGTTATCAGATCAAATCAAATGTTAAAGACCTTGATAACTGTGGAGAATCCCACTCAAAATTCTCACTGTTGTGGGTAACATTCATGTGCAGTGGATACGATTATTAGGATACATGCAAGATGGGAAGGTAAAAGTCAAAACCTACAGTGTTCTCCTTAACTTTCCTATTGGCGTTTGTCTACTATGGACACTGTAATATTGTAGATGAAATAGCCTTGAGTTGGTCAAGGTGTTGACTTTGTTCTAGTCATATCATGCTATGCTGGAGTATACCTGTTTTATCTTAGGATTACGTATTACCAAATTAGACAGAAAGATTCTGTTAAGTAAGGTCTATTTGATCTGCTTATAAGAAAATCTAGTCTGTTAGTTTCTATTGGGGATTTGCTTATAAGAAATTTATCTTTAAAATTGAACTTTTCTTGCAGTTCCAAAAGGGAAAAAGCGCAAAACTGACTCAGGCGCTGAGGTTTGCTTAATTCTAGACTCTATAACTCACTGTTTCTTTTTCCTTTTCGAGGTAATCGTTGACACTCTTCTTGTGTAGAGGCCCAACATTTACTTCCAAATAACATTGTTGGACTAAATCGTTATGTAAAGTTATTTACATTCTGCAGAATACTCCATTAATAACACCTCCATTTTAGTCATATTAAGCTGTGTGATTTAGGCACCACTATCCCCTCCCTCTCTAATCACACTTCTTTTTCCTTTGAAGACATTTTTTGTTGAAAAGTTCCTCAGCTATTATTTAAGTGCTTCAATCACATCGAAGGAAGTGATTTAAAAAGACCTGCAATTGCTTGATCAATACAAACTTAGGTAAAAATAGGGACAATGGAAGAAAAAGATCCATGTAGGTGATAGCTATTAGTTGAGGATAGGTATTAGACTCGTATGGAACTTCCTTTTTTTTTTCTGGTAATGCGTAGTAGTAGTAGTTGTTTTTGTTGTATAGTATTAGTGTTTGAAAGATATTGATTTGTAACTCGGTCATTGATGGCAGAAGGGCAATGTATCTGTAGAGAAACTTGTGAAGATTCAGATTCCATCTACTTTGAAGAAGCAACTAGTT-GATGATTGGGAGTTCATCATGCACCAGAATAAGGTATATATGTGTAGGATAATGACTAAGTCTATATGTCGTATTTTCTGTTGGCAAGCTCATTAGCAGTTGAAGACACAAGTGACTCAAAAAGATCTTGGATTCCTCTGTTTCGATTTCTAGTGTTTCATGGAGATTGACTCCTATAAAAAAAAAATTTATCAAGTAATATAGTTCCAGTCATATTATTAAGGTTGCTTAGCGGGAGCCGTGCTCCAACAAGAACCGAGTCCTAGTATTGGACACATTGTGGATGTAAGTAAAGCGTTGTCTTGTAAGGTTGATGGATTGGAGCATAGATGGAAAATGGGAAACCCATAATAGAGCAATCAACCAGCAGTAGAATTGCTGACTCATCTTATCTCAACTTGAAACCCCCCCCCCCACACACACACAAAAGGCGCAGACAAATAGATAAGGGCGATGCCTAATTTGCTTTTGAGATCTTTGCTGATTTACTAGACTAAGTCCCTCCCAGGCCCAGCTAATCTGAGCAGGAATTTTATGAGATTAAATCGTACTGGATAATATGACACTTATCTGTCCTGCTACATGTCTGTATTCTTCCCTACAAGTGCATGCTGGAGTTGATCAAATTTCTTTTCTTCATTTTGTTCAGACTATGTTGGTTCTTAGTGTTGGTTGCTAAATACAATATTGCCAGTGATGATATCTGATGTGTTATTCTTAACAGCTTGTGAAGCTCCCACGATCTCCTACTGTGGATGATATATTGACCAAGTACCTTGAATACCGAT</genome_strand>
        <mrna_strand>AAAGGTTCACGACTCACGCGTGTAGAGATCCAGTGGTCCCTTTTTTTTTTGAAACCGATAAAGAAGTGGGAAACAAATTCCTCCGTCACATACGGCCAAAGGCGGAGGAGATACTACTGGTCGGAAGTCTCGGATAAACGGAAATGGTTAACTCAAAAAACAACTCTTCTACCGACAGCGAAAATTCCTCCGGTGACGTTCCCGACTCTAAACCTAGTCTCTACTTTGAAGGCGAGAAGGTTCTCGCTTATCATGGCCCTCGCATCTACGAAGCAAAG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTCCAAAAAGCAGAGCTGCGGAAGAACGAATGGAGATACTTCGTTCATTACCTT...........................................................................................................................................................................................GGCTGGAACAAAAA.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTGGGATGAATGGGTAGGAGCTGACCGCTTGATGAAGCACACAGAAGACAACGTCTTGAAGCAGCAGGCCCTGGACAAGAAGCAGGGCATGGAGAAAAGTACTAAATCTGGACGTTCAGCACCGGCAAAACCCAAAAGCTCAGCTG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATGTTAAACTGGACAAGGAAGAAACTAAGAGCAATG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTCCAAAAGGGAAAAAGCGCAAAACTGACTCAGGCGCTGAG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAGGGCAATGTATCTGTAGAGAAACTTGTGAAGATTCAGATTCCATCTACTTTGAAGAAGCAACTAGTTNGATGATTGGGAGTTCATCATGCACCAGAATAAG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTTGTGAAGCTCCCACGATCTCCTACTGTGGATGATATATTGACCNAGTACCTTGAATACCGAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0017H17-A4Bcr/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E209912" ref_strand="+" ref_description="SGN-E209912 [cLEC-52-N17]">
      <seq>gaaacaaattcctccgtcacatacggccaaaggcggaggagatactactggtcggaagtctcggataaacggaaatggttaactcaaaaaacaactcttctaccgacagcgaaaattcctccggtgacgttcccgactctaaacctagtctctactttgaaggcgagaaggttctcgcttatcatggccctcgcatctacgaagcaaaggtccaaaaagcagagctgcggaagaacgaatggagatacttcgttcattaccttggctggaacaaaaattgggatgaatgggtaggagctgaccgcttgatgaagcacacagaagacaacgtcttgaagcagcaggccctggacaagaagcagggcatggagaaaagtactaaatctggacgttcagcaccggcaaaacccaaaagctcagctgatgttaaactggacaaggaagaaactaagagcaatgaagggcaatgtatctgtagagaaacttgtgaagattcagattccatctactttgaagaagcaactagttgatgattgggaggtcatcatgcaccagaataagcttgtgaagctcccacgatctcctactgtggatgatatatttgaccaagtaccttgaatac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0017H17-A4Bcr/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02SLe0017H17.1" temp_strand="-" temp_description="C02SLe0017H17.1  AC215447.2 htgs_phase:3 submitted_to_sgn_as:C02SLe0017H17 sequenced_by:kribb upload_account_name:korea">
        <position start="17492" stop="9401"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="17192" g_stop="16984" g_length="209"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="209" r_length="209" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="16983" i_stop="15390" i_length="1594">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.647" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="15389" g_stop="15336" g_length="54"/>
          <reference_exon_boundary r_type="cDNA" r_start="210" r_stop="263" r_length="54" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="15335" i_stop="15149" i_length="187">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.989" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="15148" g_stop="15135" g_length="14"/>
          <reference_exon_boundary r_type="cDNA" r_start="264" r_stop="277" r_length="14" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="15134" i_stop="13886" i_length="1249">
            <donor d_prob="0.000" d_score="0.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="13885" g_stop="13740" g_length="146"/>
          <reference_exon_boundary r_type="cDNA" r_start="278" r_stop="423" r_length="146" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="13739" i_stop="13131" i_length="609">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.968" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="13130" g_stop="13095" g_length="36"/>
          <reference_exon_boundary r_type="cDNA" r_start="424" r_stop="459" r_length="36" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="13094" i_stop="10554" i_length="2541">
            <donor d_prob="0.937" d_score="0.00"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="10553" g_stop="10452" g_length="102"/>
          <reference_exon_boundary r_type="cDNA" r_start="460" r_stop="561" r_length="102" r_score="0.990"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="10451" i_stop="9761" i_length="691">
            <donor d_prob="0.991" d_score="0.98"/>
            <acceptor a_prob="0.989" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="9760" g_stop="9701" g_length="60"/>
          <reference_exon_boundary r_type="cDNA" r_start="562" r_stop="622" r_length="61" r_score="0.967"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLe0017H17.1" gen_strand="-" ref_id="SGN-E209912" ref_strand="+">
        <total_alignment_score>0.995</total_alignment_score>
        <cumulative_length_of_scored_exons>621</cumulative_length_of_scored_exons>
        <coverage percentage="0.998" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0017H17.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E209912" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="17192" e_stop="16984"/>
          <exon e_start="15389" e_stop="15336"/>
          <exon e_start="15148" e_stop="15135"/>
          <exon e_start="13885" e_stop="13740"/>
          <exon e_start="13130" e_stop="13095"/>
          <exon e_start="10553" e_stop="10452"/>
          <exon e_start="9760" e_stop="9701"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAAACAAATTCCTCCGTCACATACGGCCAAAGGCGGAGGAGATACTACTGGTCGGAAGTCTCGGATAAACGGAAATGGTTAACTCAAAAAACAACTCTTCTACCGACAGCGAAAATTCCTCCGGTGACGTTCCCGACTCTAAACCTAGTCTCTACTTTGAAGGCGAGAAGGTTCTCGCTTATCATGGCCCTCGCATCTACGAAGCAAAGGCACGTTTCTTGTTTTTCTCTTTTCATCTTATGCAGAAATCGCTAATTTTGTTTGGGTATACCGTAATTAATTGCCGAAATTGAATGATTAGGCCTTTTATCACACGTATCTTCCTTTGGATTATTCGTGTATCTAATTTGTCTGTAACGGTTGTGTCATATCTTCTCTGATTTATGTTTGATAATTGGTTGAGATTTTTTGTCATTTTGCTTTTCTGTTTGCTGTTAGATATGCACCACTTTGCATCCGATTGTGTGATGATTTCAGGGGAACTATTATGACTTTTGGACTGTTTCATCCATATTTAATGCTAAATTGGCGTAGAATTAGAGTTGCAAATTATACTAATCCTGTCCTGTAATCCATAATTCTGTTCGTTTTTTTAGCTTTATGAATAAATTATGGATTGTCTCTACTGTTTGATGCTTTTAGGTTTGCTTTATCATCTTAACTCATTGCTCTACTGACTCTAATCTAGACTTAGGGGTCAATCTATTGATTTTTTCTGTGGACTCCACTCTCTCTGCTCTAATGTCTGTTAAGCCTTCTCAAAGATTAGGTAAACTAAACAATTGGCAGTGTCGAAGGATGTTACATATATGAACATCCTCATATAGATTGTGGAAGGGTTCCTAAATTGATTTAGCGATCTTGAGCTAGTCTCCATCATGATTTTATTTAGATAATCTGATTTGCGCCCCATAGCAAACTTTTTGGCATGATTGTTTTCACATATCATAGAAACAATTTTTAATGTCTTATATATTCAATACATTTACACTGATTTTGTATTTTTGTGCAATCCATGTAAATATGGGTTGATCTGAGTTTAAGAACTGGGATGAATTTTGGAAAATATACTTCAACTTTTGACCTATTCCAGTTACCCGATCTTCCCTGCAAATCATGTTTTTGTATGTCAAGAGAATGCAACTCTAGACAATATATGGTTCTTATACGGAGGATTGCTAGTTTCACCTCTTATAGTTATGCACTAGTGTATTTCTGACAGGATATAGTGTGTGATATGTAGGTCAGATGCACATCATGGGTTCGAATCCTACCATAGACAAAGGCCTGATATTTAAGTGGAAAAGGGTAGAGGGGCAGGTTCATTATCCACTGAGTTTTGAACCATACACCACTAGCCGTTGGAAATTTCTCAGTTATTAAAAAAAAGTACTACTCAGCTTATTGAAATTACATATTAGTGAATAATTTGAGTTGTTGGGATTAGTTTTGGCTTCGTTGATATAGGACAATTGAAGTACTAAGTTTGCAAATGTTGTTGTTATTTGTGTATTTTCTCTAAAGCTCGAACTTTACTTTGAGAATGCTTGCACTTTGCTCTTGCTTATAACTCTCAAAATCGTGTTGTTTGTTTACACTTGTGACAATTGAAAATACCAATTGTGTATAAGTTTTTTCTTACAAGAGAAAGCTTCATTTCCTCTATATGGAAAACAATTAGTGTACGGTGATATAGTGCTTGCCTTCTACAAATTGTAGCGCCCTGATGAAATCATGTTATTTAATGCTTGCTACAAGATTTTTGCGACCCTCCAATTTGATCCTTGCATTTCTTCTTTGAAGGTCCAAAAAGCAGAGCTGCGGAAGAACGAATGGAGATACTTCGTTCATTACCTTGTAAGTTTAAATTTATATCTTCTTTCACCATATGCTTTACATATGACAATTAAATTTGGTACTTCTTTAGTTAAAAGATGTGAGAAAGCTTGTAGCATAGCCTTACATTATTACCTTGTTTAAAATTTTTTCAATATTCTTAATGATATCGAGAAATAATACTCCTTTTATTTATTTTAATTTACAGGGCTGGAACAAAAAGTGAGTTTATGAAGTTACTTGTAGAAAGTTCTTAATTCAAGAGTATCTTAAATTGCTAGTCACATCAGGATTGAAAGGTTGACCAACTCATTTGAATGTTGAATGTGCTGCCTTAAAAGTTTTTTCTTTGAATGTTCTGCTCCGAAGGAGCTTGGCCTTGAGCAAGAGGCATAGAGTAATTTGATGCTTCCTTGTTGATTATGGTGATTATTTTACAAATTATATGTGGAAGGTTGTGCTGCTCTGGATTTAAAGTGCAATTGTGAATACATAATTTTGATTTGCATAGCATCAGGTAGCACAATGAATTTGGTCTTTGGATATTAATAGCGAAGTTTTATCATTTTAACTACATGCTCCTTTTGTTTCAAATTTAGTGTTCATCTCTCCATTTTGATCTTTTGGGAGAATATTTTCATTTTCTGTAAATGGGAATGATTCGAAGATTTAATACTTTACATGGGGATCTACCTTTACTCTGATCCTTAAGCACTTTCTTTATGTTATTCTAACAAACATTTGCCAATATTTCAAATAATCCTAATTCCTATCTTCCCATATAAATTCAAACAATGATGTTGAAATAGAAAAGGACTGATAACAAGTTCTCTCAGCTTTTTTGCCTGTGTAATAAGGACTAATTCAATAGACATTCATGATTTCACTGTTCTCCCCCTGTCTTATTGTGCATGGTACTTTTACTATTTAGATACTCAAGCTCTTTCTTTGGACTACAGTTTTTTTACAATATTTTTAATTTAAAAAATCATTTACAAATGTTTGTAACTTCGTAAATTTATTCAAAAAAATTAAGCAATTGATGGTTAAATTTTTGCTCTGAAATTACATTCTATGACTTGGTACTCCAAACCCCATAAACTCTTTTCAGCGACAGGAAATAATAGCTATTTTACATTGCTGTGTACGTCTGGTTCTGCAGCAAATGTGAAGCTAGTTTTTTGTGTACTTCAATCTGAATTTTGGATGTTGTAGTTGTTAACTCTCTGATTTAAAAATAATGATTTACTTTCTTTTTTAGTCTGTTTCAGAAAGATTGACCCATTTCCTTTTTTGGCAACACTTTAGTTTTAGCTTTCCATGTAGCATGTTTAGGAACATAAGATTAGAGGACATTTTGGTACATTTGACATAAATTAAACTAGGTCCTTTTTTTTTAAACAGAGGGAGTATTTGTTGATTGTAAGTATATTCTGCAAACCCTAATTCCTGAAACTATGTCTTGTAACAGTTGGGATGAATGGGTAGGAGCTGACCGCTTGATGAAGCACACAGAAGACAACGTCTTGAAGCAGCAGGCCCTGGACAAGAAGCAGGGCATGGAGAAAAGTACTAAATCTGGACGTTCAGCACCGGCAAAACCCAAAAGCTCAGCTGGTAAGTTTTCTCTAGGTTTATATTAGAATGAGGGCTATAGATGACCATTTTAGGTAGTTCTCTGGTCATGGAAATACTTTCTTGCATAACCATTTTTAAGTAGTTCTCAGCTGGTATGTTTTCTCTAGGTTTATATTGGAATGAAGGCTATAGATGACCATTGTAGGTAGTTCTCTGGTCATGGAAATACTTCCTTGCGTAACATATCGAAATTTATAACACTTTTCAGGTATCAGTATTACTCCTGATGCCTTTTATAGAAGTCGAAAGTCTATTTGGAGAATTAGCTGATTGAAATATAATAGTCGTTTGAACCAAATTCCAGAAGATTAGTTTCTTAATGATGTTTGGTTATGTGACTCGGAAATATGGAAACGTCACCAAAGTTAAGGTTGTAAATCCTCTTTAGCATAACTTGACATACCAACATGTACTCTTTTTGTTGTTCTAACTCATGTTTTCAATTTCGAAGTTCTCTTTGCATATCTAACAGTGAATGTTAATTACAAAACCAAATGCCTGTCTCCTCTGAAGGAAAGATGATGTAACGGAGTCAAGGGTTAGGTCTAGGGATTGAATTCTTGTTAGTAACTTACTTTTCATTTGCAGATGTTAAACTGGACAAGGAAGAAACTAAGAGCAATGGTATGCCATCTTATGATTTTGAATTTTGTGCTTCTCCTTGAGCTCTTCTGCATTATTTGTTGGGGGTGGATGGTAATTATGTGGCTTGGACATTATTCCTCCTTGAATTGTGTTTGCTTTGAGTTTTTTTTTGTTGACACTAGTAACATTTTGTGTTTGCTTTGAGTTAATTTAGGCCTGATAGTAATAATAAGGCCAGAAGGTAGGGATTCCCACCGTCCTCCACATAAGTAGAGTAGGTTGGTCTGTTAGATATAAATTCCCTTTTTTGTTGGATAAGGAATTTTTTTCCTTATTTTTGACTCTCCATTTAACTTTTGTTTTTAAAGAAGCTGCATAACCCTTCCCAAAGACCTCATTCTGAAAGCCTCCCAGTTCCCTTTCCAAATTAAAGAAATGGGGCACTGATTAATAAAGCATCCTTGACCTCAACCGTAACTGCGGGTACTGATGAATCAGGTATCCTGAACCTCAACCCTAACTTCTTTAGAACAATTATTGCTGTGTGTTGCTTTATTAGTTTCATTTTTAGTTGTAAAACTAATGTTTAGGAAGTAGTCTTCTTGTATATACTGGAAATCTATCCCAAACCTAATTATTATGTATTTTTTGACATAATATACTTTATTGATTGTCTTTGTCAAAAAAATATACTTTATTGATTATATTTAGGCAATGTACATTTTTCTCAGAAAAGTTAAATCTCATTTTTTTAAGCCGCCTTAATCAAATGTTCCACTCAGAAACACCATATAATCTAGTTGTATTTCAATTTGTCTAGCAAATCAATTAGAAAGCTGTAGTAATTGCATTTATGAGGGTATAAATGAAGCATGCTGGATGAATACCTTGATAAGACACAGTTTTAGACTTAAGTATGGATTATGTGACTTGGAAGACGCAATGCATATACTAGGATGTTAAGCATAGGTGGAAGAAAAATAAGAAAAGGAGGAAAATCAGAAGGATTGCCAAGAAGCAAGATATGATTGCATTGGAGAAGTAATGATTGTCTTTCCTATAACAAAAGAAAGTATAAGGGCAACAAAGGCCATTACCTTAAATTTTCAATAGTTGACATGCCTTTGACTGAGTATACACATAGAATGTGGAGGCTCGTCTTTCTGTTTGTAAAATTAATCAGGGATCACAAGAAACACAAAGAATATGGAAGAAAATTGGTCATTACTAGAATTTTGTGCCTCGCTTTCTTCTTTGGCGAGGCTTGCTCATGCATATTTTTCATGTTCTACCATAGCAAAGAGACAACTTCTTTCTTCTTGCCTTTGCATATGCTCTAAGAATGCATGTTCTGATCACTATTTACTACTATGATTGCTAGCTCATACTCGTTATCTAGTTTAAATTTTGGTATTAGAGATCTAATTGAGGTAAAAGATTTGACTCTTCGACTGGCTTTTGGACATTTAACTGATGGAAGCTGTACCCGGGCAGTACATAAAATTAGTATAGCTCAATCAAAGTATCCAGTTCCATTCAAATCCCCTGATGATAACTTATACAAAAGGTTTTGGGTTATCAGATCAAATCAAATGTTAAAGACCTTGATAACTGTGGAGAATCCCACTCAAAATTCTCACTGTTGTGGGTAACATTCATGTGCAGTGGATACGATTATTAGGATACATGCAAGATGGGAAGGTAAAAGTCAAAACCTACAGTGTTCTCCTTAACTTTCCTATTGGCGTTTGTCTACTATGGACACTGTAATATTGTAGATGAAATAGCCTTGAGTTGGTCAAGGTGTTGACTTTGTTCTAGTCATATCATGCTATGCTGGAGTATACCTGTTTTATCTTAGGATTACGTATTACCAAATTAGACAGAAAGATTCTGTTAAGTAAGGTCTATTTGATCTGCTTATAAGAAAATCTAGTCTGTTAGTTTCTATTGGGGATTTGCTTATAAGAAATTTATCTTTAAAATTGAACTTTTCTTGCAGTTCCAAAAGGGAAAAAGCGCAAAACTGACTCAGGCGCTGAGGTTTGCTTAATTCTAGACTCTATAACTCACTGTTTCTTTTTCCTTTTCGAGGTAATCGTTGACACTCTTCTTGTGTAGAGGCCCAACATTTACTTCCAAATAACATTGTTGGACTAAATCGTTATGTAAAGTTATTTACATTCTGCAGAATACTCCATTAATAACACCTCCATTTTAGTCATATTAAGCTGTGTGATTTAGGCACCACTATCCCCTCCCTCTCTAATCACACTTCTTTTTCCTTTGAAGACATTTTTTGTTGAAAAGTTCCTCAGCTATTATTTAAGTGCTTCAATCACATCGAAGGAAGTGATTTAAAAAGACCTGCAATTGCTTGATCAATACAAACTTAGGTAAAAATAGGGACAATGGAAGAAAAAGATCCATGTAGGTGATAGCTATTAGTTGAGGATAGGTATTAGACTCGTATGGAACTTCCTTTTTTTTTTCTGGTAATGCGTAGTAGTAGTAGTTGTTTTTGTTGTATAGTATTAGTGTTTGAAAGATATTGATTTGTAACTCGGTCATTGATGGCAGAAGGGCAATGTATCTGTAGAGAAACTTGTGAAGATTCAGATTCCATCTACTTTGAAGAAGCAACTAGTTGATGATTGGGAGTTCATCATGCACCAGAATAAGGTATATATGTGTAGGATAATGACTAAGTCTATATGTCGTATTTTCTGTTGGCAAGCTCATTAGCAGTTGAAGACACAAGTGACTCAAAAAGATCTTGGATTCCTCTGTTTCGATTTCTAGTGTTTCATGGAGATTGACTCCTATAAAAAAAAAATTTATCAAGTAATATAGTTCCAGTCATATTATTAAGGTTGCTTAGCGGGAGCCGTGCTCCAACAAGAACCGAGTCCTAGTATTGGACACATTGTGGATGTAAGTAAAGCGTTGTCTTGTAAGGTTGATGGATTGGAGCATAGATGGAAAATGGGAAACCCATAATAGAGCAATCAACCAGCAGTAGAATTGCTGACTCATCTTATCTCAACTTGAAACCCCCCCCCCCACACACACACAAAAGGCGCAGACAAATAGATAAGGGCGATGCCTAATTTGCTTTTGAGATCTTTGCTGATTTACTAGACTAAGTCCCTCCCAGGCCCAGCTAATCTGAGCAGGAATTTTATGAGATTAAATCGTACTGGATAATATGACACTTATCTGTCCTGCTACATGTCTGTATTCTTCCCTACAAGTGCATGCTGGAGTTGATCAAATTTCTTTTCTTCATTTTGTTCAGACTATGTTGGTTCTTAGTGTTGGTTGCTAAATACAATATTGCCAGTGATGATATCTGATGTGTTATTCTTAACAGCTTGTGAAGCTCCCACGATCTCCTACTGTGGATGATATA-TTGACCAAGTACCTTGAATAC</genome_strand>
        <mrna_strand>GAAACAAATTCCTCCGTCACATACGGCCAAAGGCGGAGGAGATACTACTGGTCGGAAGTCTCGGATAAACGGAAATGGTTAACTCAAAAAACAACTCTTCTACCGACAGCGAAAATTCCTCCGGTGACGTTCCCGACTCTAAACCTAGTCTCTACTTTGAAGGCGAGAAGGTTCTCGCTTATCATGGCCCTCGCATCTACGAAGCAAAG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTCCAAAAAGCAGAGCTGCGGAAGAACGAATGGAGATACTTCGTTCATTACCTT...........................................................................................................................................................................................GGCTGGAACAAAAA.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTGGGATGAATGGGTAGGAGCTGACCGCTTGATGAAGCACACAGAAGACAACGTCTTGAAGCAGCAGGCCCTGGACAAGAAGCAGGGCATGGAGAAAAGTACTAAATCTGGACGTTCAGCACCGGCAAAACCCAAAAGCTCAGCTG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATGTTAAACTGGACAAGGAAGAAACTAAGAGCAATG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAGGGCAATGTATCTGTAGAGAAACTTGTGAAGATTCAGATTCCATCTACTTTGAAGAAGCAACTAGTTGATGATTGGGAGGTCATCATGCACCAGAATAAG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTTGTGAAGCTCCCACGATCTCCTACTGTGGATGATATATTTGACCAAGTACCTTGAATAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0017H17-A4Bcr/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E336016" ref_strand="+" ref_description="SGN-E336016 [cTOE-6-H14]">
      <seq>ctttttttttgaaaccgataaagaagtgggaaacaaattcctccgtcacatacggccaaaggcggaggagatactactggtcggaagtctcggataaacggaaatggttaactcaaaaaacaactcttctaccgacagcgaaaattcctccggtgacgttcccgactctaaacctagtctctactttgaaggcgagaaggttctcgcttatcatggccctcgcatctacgaagcaaaggtccaaaaagcagagctgcggaagaacgaatggagatacttcgttcattaccttggctggaacaaaaattgggatgaatgggtaggagctgaccgcttgatgaagcacacagaagacaacgtcttgaagcagcaggccctggacaagaagcagggcatggagaaaagtactaaatctggacgttcagcaccggcaaaacccaaaagctcagctgatgttaaactggacaaggaagaaactaagagcaatgttccaaaagggaaaaagcgcaaaactgactcangcgctgagaagggcaatgtatctgtagag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0017H17-A4Bcr/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02SLe0017H17.1" temp_strand="-" temp_description="C02SLe0017H17.1  AC215447.2 htgs_phase:3 submitted_to_sgn_as:C02SLe0017H17 sequenced_by:kribb upload_account_name:korea">
        <position start="17521" stop="10233"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="17221" g_stop="16984" g_length="238"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="238" r_length="238" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="16983" i_stop="15390" i_length="1594">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.647" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="15389" g_stop="15336" g_length="54"/>
          <reference_exon_boundary r_type="cDNA" r_start="239" r_stop="292" r_length="54" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="15335" i_stop="15149" i_length="187">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.989" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="15148" g_stop="15135" g_length="14"/>
          <reference_exon_boundary r_type="cDNA" r_start="293" r_stop="306" r_length="14" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="15134" i_stop="13886" i_length="1249">
            <donor d_prob="0.000" d_score="0.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="13885" g_stop="13740" g_length="146"/>
          <reference_exon_boundary r_type="cDNA" r_start="307" r_stop="452" r_length="146" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="13739" i_stop="13131" i_length="609">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.968" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="13130" g_stop="13095" g_length="36"/>
          <reference_exon_boundary r_type="cDNA" r_start="453" r_stop="488" r_length="36" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="13094" i_stop="11132" i_length="1963">
            <donor d_prob="0.937" d_score="0.00"/>
            <acceptor a_prob="0.997" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="11131" g_stop="11091" g_length="41"/>
          <reference_exon_boundary r_type="cDNA" r_start="489" r_stop="529" r_length="41" r_score="0.976"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="11090" i_stop="10554" i_length="537">
            <donor d_prob="0.998" d_score="0.98"/>
            <acceptor a_prob="0.995" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="10553" g_stop="10533" g_length="21"/>
          <reference_exon_boundary r_type="cDNA" r_start="530" r_stop="550" r_length="21" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLe0017H17.1" gen_strand="-" ref_id="SGN-E336016" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>550</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0017H17.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E336016" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="17221" e_stop="16984"/>
          <exon e_start="15389" e_stop="15336"/>
          <exon e_start="15148" e_stop="15135"/>
          <exon e_start="13885" e_stop="13740"/>
          <exon e_start="13130" e_stop="13095"/>
          <exon e_start="11131" e_stop="11091"/>
          <exon e_start="10553" e_stop="10533"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTTTTTTTTTGAAACCGATAAAGAAGTGGGAAACAAATTCCTCCGTCACATACGGCCAAAGGCGGAGGAGATACTACTGGTCGGAAGTCTCGGATAAACGGAAATGGTTAACTCAAAAAACAACTCTTCTACCGACAGCGAAAATTCCTCCGGTGACGTTCCCGACTCTAAACCTAGTCTCTACTTTGAAGGCGAGAAGGTTCTCGCTTATCATGGCCCTCGCATCTACGAAGCAAAGGCACGTTTCTTGTTTTTCTCTTTTCATCTTATGCAGAAATCGCTAATTTTGTTTGGGTATACCGTAATTAATTGCCGAAATTGAATGATTAGGCCTTTTATCACACGTATCTTCCTTTGGATTATTCGTGTATCTAATTTGTCTGTAACGGTTGTGTCATATCTTCTCTGATTTATGTTTGATAATTGGTTGAGATTTTTTGTCATTTTGCTTTTCTGTTTGCTGTTAGATATGCACCACTTTGCATCCGATTGTGTGATGATTTCAGGGGAACTATTATGACTTTTGGACTGTTTCATCCATATTTAATGCTAAATTGGCGTAGAATTAGAGTTGCAAATTATACTAATCCTGTCCTGTAATCCATAATTCTGTTCGTTTTTTTAGCTTTATGAATAAATTATGGATTGTCTCTACTGTTTGATGCTTTTAGGTTTGCTTTATCATCTTAACTCATTGCTCTACTGACTCTAATCTAGACTTAGGGGTCAATCTATTGATTTTTTCTGTGGACTCCACTCTCTCTGCTCTAATGTCTGTTAAGCCTTCTCAAAGATTAGGTAAACTAAACAATTGGCAGTGTCGAAGGATGTTACATATATGAACATCCTCATATAGATTGTGGAAGGGTTCCTAAATTGATTTAGCGATCTTGAGCTAGTCTCCATCATGATTTTATTTAGATAATCTGATTTGCGCCCCATAGCAAACTTTTTGGCATGATTGTTTTCACATATCATAGAAACAATTTTTAATGTCTTATATATTCAATACATTTACACTGATTTTGTATTTTTGTGCAATCCATGTAAATATGGGTTGATCTGAGTTTAAGAACTGGGATGAATTTTGGAAAATATACTTCAACTTTTGACCTATTCCAGTTACCCGATCTTCCCTGCAAATCATGTTTTTGTATGTCAAGAGAATGCAACTCTAGACAATATATGGTTCTTATACGGAGGATTGCTAGTTTCACCTCTTATAGTTATGCACTAGTGTATTTCTGACAGGATATAGTGTGTGATATGTAGGTCAGATGCACATCATGGGTTCGAATCCTACCATAGACAAAGGCCTGATATTTAAGTGGAAAAGGGTAGAGGGGCAGGTTCATTATCCACTGAGTTTTGAACCATACACCACTAGCCGTTGGAAATTTCTCAGTTATTAAAAAAAAGTACTACTCAGCTTATTGAAATTACATATTAGTGAATAATTTGAGTTGTTGGGATTAGTTTTGGCTTCGTTGATATAGGACAATTGAAGTACTAAGTTTGCAAATGTTGTTGTTATTTGTGTATTTTCTCTAAAGCTCGAACTTTACTTTGAGAATGCTTGCACTTTGCTCTTGCTTATAACTCTCAAAATCGTGTTGTTTGTTTACACTTGTGACAATTGAAAATACCAATTGTGTATAAGTTTTTTCTTACAAGAGAAAGCTTCATTTCCTCTATATGGAAAACAATTAGTGTACGGTGATATAGTGCTTGCCTTCTACAAATTGTAGCGCCCTGATGAAATCATGTTATTTAATGCTTGCTACAAGATTTTTGCGACCCTCCAATTTGATCCTTGCATTTCTTCTTTGAAGGTCCAAAAAGCAGAGCTGCGGAAGAACGAATGGAGATACTTCGTTCATTACCTTGTAAGTTTAAATTTATATCTTCTTTCACCATATGCTTTACATATGACAATTAAATTTGGTACTTCTTTAGTTAAAAGATGTGAGAAAGCTTGTAGCATAGCCTTACATTATTACCTTGTTTAAAATTTTTTCAATATTCTTAATGATATCGAGAAATAATACTCCTTTTATTTATTTTAATTTACAGGGCTGGAACAAAAAGTGAGTTTATGAAGTTACTTGTAGAAAGTTCTTAATTCAAGAGTATCTTAAATTGCTAGTCACATCAGGATTGAAAGGTTGACCAACTCATTTGAATGTTGAATGTGCTGCCTTAAAAGTTTTTTCTTTGAATGTTCTGCTCCGAAGGAGCTTGGCCTTGAGCAAGAGGCATAGAGTAATTTGATGCTTCCTTGTTGATTATGGTGATTATTTTACAAATTATATGTGGAAGGTTGTGCTGCTCTGGATTTAAAGTGCAATTGTGAATACATAATTTTGATTTGCATAGCATCAGGTAGCACAATGAATTTGGTCTTTGGATATTAATAGCGAAGTTTTATCATTTTAACTACATGCTCCTTTTGTTTCAAATTTAGTGTTCATCTCTCCATTTTGATCTTTTGGGAGAATATTTTCATTTTCTGTAAATGGGAATGATTCGAAGATTTAATACTTTACATGGGGATCTACCTTTACTCTGATCCTTAAGCACTTTCTTTATGTTATTCTAACAAACATTTGCCAATATTTCAAATAATCCTAATTCCTATCTTCCCATATAAATTCAAACAATGATGTTGAAATAGAAAAGGACTGATAACAAGTTCTCTCAGCTTTTTTGCCTGTGTAATAAGGACTAATTCAATAGACATTCATGATTTCACTGTTCTCCCCCTGTCTTATTGTGCATGGTACTTTTACTATTTAGATACTCAAGCTCTTTCTTTGGACTACAGTTTTTTTACAATATTTTTAATTTAAAAAATCATTTACAAATGTTTGTAACTTCGTAAATTTATTCAAAAAAATTAAGCAATTGATGGTTAAATTTTTGCTCTGAAATTACATTCTATGACTTGGTACTCCAAACCCCATAAACTCTTTTCAGCGACAGGAAATAATAGCTATTTTACATTGCTGTGTACGTCTGGTTCTGCAGCAAATGTGAAGCTAGTTTTTTGTGTACTTCAATCTGAATTTTGGATGTTGTAGTTGTTAACTCTCTGATTTAAAAATAATGATTTACTTTCTTTTTTAGTCTGTTTCAGAAAGATTGACCCATTTCCTTTTTTGGCAACACTTTAGTTTTAGCTTTCCATGTAGCATGTTTAGGAACATAAGATTAGAGGACATTTTGGTACATTTGACATAAATTAAACTAGGTCCTTTTTTTTTAAACAGAGGGAGTATTTGTTGATTGTAAGTATATTCTGCAAACCCTAATTCCTGAAACTATGTCTTGTAACAGTTGGGATGAATGGGTAGGAGCTGACCGCTTGATGAAGCACACAGAAGACAACGTCTTGAAGCAGCAGGCCCTGGACAAGAAGCAGGGCATGGAGAAAAGTACTAAATCTGGACGTTCAGCACCGGCAAAACCCAAAAGCTCAGCTGGTAAGTTTTCTCTAGGTTTATATTAGAATGAGGGCTATAGATGACCATTTTAGGTAGTTCTCTGGTCATGGAAATACTTTCTTGCATAACCATTTTTAAGTAGTTCTCAGCTGGTATGTTTTCTCTAGGTTTATATTGGAATGAAGGCTATAGATGACCATTGTAGGTAGTTCTCTGGTCATGGAAATACTTCCTTGCGTAACATATCGAAATTTATAACACTTTTCAGGTATCAGTATTACTCCTGATGCCTTTTATAGAAGTCGAAAGTCTATTTGGAGAATTAGCTGATTGAAATATAATAGTCGTTTGAACCAAATTCCAGAAGATTAGTTTCTTAATGATGTTTGGTTATGTGACTCGGAAATATGGAAACGTCACCAAAGTTAAGGTTGTAAATCCTCTTTAGCATAACTTGACATACCAACATGTACTCTTTTTGTTGTTCTAACTCATGTTTTCAATTTCGAAGTTCTCTTTGCATATCTAACAGTGAATGTTAATTACAAAACCAAATGCCTGTCTCCTCTGAAGGAAAGATGATGTAACGGAGTCAAGGGTTAGGTCTAGGGATTGAATTCTTGTTAGTAACTTACTTTTCATTTGCAGATGTTAAACTGGACAAGGAAGAAACTAAGAGCAATGGTATGCCATCTTATGATTTTGAATTTTGTGCTTCTCCTTGAGCTCTTCTGCATTATTTGTTGGGGGTGGATGGTAATTATGTGGCTTGGACATTATTCCTCCTTGAATTGTGTTTGCTTTGAGTTTTTTTTTGTTGACACTAGTAACATTTTGTGTTTGCTTTGAGTTAATTTAGGCCTGATAGTAATAATAAGGCCAGAAGGTAGGGATTCCCACCGTCCTCCACATAAGTAGAGTAGGTTGGTCTGTTAGATATAAATTCCCTTTTTTGTTGGATAAGGAATTTTTTTCCTTATTTTTGACTCTCCATTTAACTTTTGTTTTTAAAGAAGCTGCATAACCCTTCCCAAAGACCTCATTCTGAAAGCCTCCCAGTTCCCTTTCCAAATTAAAGAAATGGGGCACTGATTAATAAAGCATCCTTGACCTCAACCGTAACTGCGGGTACTGATGAATCAGGTATCCTGAACCTCAACCCTAACTTCTTTAGAACAATTATTGCTGTGTGTTGCTTTATTAGTTTCATTTTTAGTTGTAAAACTAATGTTTAGGAAGTAGTCTTCTTGTATATACTGGAAATCTATCCCAAACCTAATTATTATGTATTTTTTGACATAATATACTTTATTGATTGTCTTTGTCAAAAAAATATACTTTATTGATTATATTTAGGCAATGTACATTTTTCTCAGAAAAGTTAAATCTCATTTTTTTAAGCCGCCTTAATCAAATGTTCCACTCAGAAACACCATATAATCTAGTTGTATTTCAATTTGTCTAGCAAATCAATTAGAAAGCTGTAGTAATTGCATTTATGAGGGTATAAATGAAGCATGCTGGATGAATACCTTGATAAGACACAGTTTTAGACTTAAGTATGGATTATGTGACTTGGAAGACGCAATGCATATACTAGGATGTTAAGCATAGGTGGAAGAAAAATAAGAAAAGGAGGAAAATCAGAAGGATTGCCAAGAAGCAAGATATGATTGCATTGGAGAAGTAATGATTGTCTTTCCTATAACAAAAGAAAGTATAAGGGCAACAAAGGCCATTACCTTAAATTTTCAATAGTTGACATGCCTTTGACTGAGTATACACATAGAATGTGGAGGCTCGTCTTTCTGTTTGTAAAATTAATCAGGGATCACAAGAAACACAAAGAATATGGAAGAAAATTGGTCATTACTAGAATTTTGTGCCTCGCTTTCTTCTTTGGCGAGGCTTGCTCATGCATATTTTTCATGTTCTACCATAGCAAAGAGACAACTTCTTTCTTCTTGCCTTTGCATATGCTCTAAGAATGCATGTTCTGATCACTATTTACTACTATGATTGCTAGCTCATACTCGTTATCTAGTTTAAATTTTGGTATTAGAGATCTAATTGAGGTAAAAGATTTGACTCTTCGACTGGCTTTTGGACATTTAACTGATGGAAGCTGTACCCGGGCAGTACATAAAATTAGTATAGCTCAATCAAAGTATCCAGTTCCATTCAAATCCCCTGATGATAACTTATACAAAAGGTTTTGGGTTATCAGATCAAATCAAATGTTAAAGACCTTGATAACTGTGGAGAATCCCACTCAAAATTCTCACTGTTGTGGGTAACATTCATGTGCAGTGGATACGATTATTAGGATACATGCAAGATGGGAAGGTAAAAGTCAAAACCTACAGTGTTCTCCTTAACTTTCCTATTGGCGTTTGTCTACTATGGACACTGTAATATTGTAGATGAAATAGCCTTGAGTTGGTCAAGGTGTTGACTTTGTTCTAGTCATATCATGCTATGCTGGAGTATACCTGTTTTATCTTAGGATTACGTATTACCAAATTAGACAGAAAGATTCTGTTAAGTAAGGTCTATTTGATCTGCTTATAAGAAAATCTAGTCTGTTAGTTTCTATTGGGGATTTGCTTATAAGAAATTTATCTTTAAAATTGAACTTTTCTTGCAGTTCCAAAAGGGAAAAAGCGCAAAACTGACTCAGGCGCTGAGGTTTGCTTAATTCTAGACTCTATAACTCACTGTTTCTTTTTCCTTTTCGAGGTAATCGTTGACACTCTTCTTGTGTAGAGGCCCAACATTTACTTCCAAATAACATTGTTGGACTAAATCGTTATGTAAAGTTATTTACATTCTGCAGAATACTCCATTAATAACACCTCCATTTTAGTCATATTAAGCTGTGTGATTTAGGCACCACTATCCCCTCCCTCTCTAATCACACTTCTTTTTCCTTTGAAGACATTTTTTGTTGAAAAGTTCCTCAGCTATTATTTAAGTGCTTCAATCACATCGAAGGAAGTGATTTAAAAAGACCTGCAATTGCTTGATCAATACAAACTTAGGTAAAAATAGGGACAATGGAAGAAAAAGATCCATGTAGGTGATAGCTATTAGTTGAGGATAGGTATTAGACTCGTATGGAACTTCCTTTTTTTTTTCTGGTAATGCGTAGTAGTAGTAGTTGTTTTTGTTGTATAGTATTAGTGTTTGAAAGATATTGATTTGTAACTCGGTCATTGATGGCAGAAGGGCAATGTATCTGTAGAG</genome_strand>
        <mrna_strand>CTTTTTTTTTGAAACCGATAAAGAAGTGGGAAACAAATTCCTCCGTCACATACGGCCAAAGGCGGAGGAGATACTACTGGTCGGAAGTCTCGGATAAACGGAAATGGTTAACTCAAAAAACAACTCTTCTACCGACAGCGAAAATTCCTCCGGTGACGTTCCCGACTCTAAACCTAGTCTCTACTTTGAAGGCGAGAAGGTTCTCGCTTATCATGGCCCTCGCATCTACGAAGCAAAG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTCCAAAAAGCAGAGCTGCGGAAGAACGAATGGAGATACTTCGTTCATTACCTT...........................................................................................................................................................................................GGCTGGAACAAAAA.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTGGGATGAATGGGTAGGAGCTGACCGCTTGATGAAGCACACAGAAGACAACGTCTTGAAGCAGCAGGCCCTGGACAAGAAGCAGGGCATGGAGAAAAGTACTAAATCTGGACGTTCAGCACCGGCAAAACCCAAAAGCTCAGCTG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATGTTAAACTGGACAAGGAAGAAACTAAGAGCAATG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTCCAAAAGGGAAAAAGCGCAAAACTGACTCANGCGCTGAG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAGGGCAATGTATCTGTAGAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0017H17-A4Bcr/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E724400" ref_strand="+" ref_description="SGN-E724400 [FC24AA07]">
      <seq>atcggccgaattcccatggggatccgattctgttagtttctattggggatttgcttataagaaatttatctttaaaattgaacttttcttgcagttccaaaagggaaaaagcgcaaaactgactcaggcgctgaggtttgcttaattctagactctataactcactgtttctttttccttttcgaggtaatcgttgacactcttcttgtgtagaggcccaacatttacttccaaataacattgttggactaaatcgttatgtaaagttatttacattctgcagaatactccattaataacacctccattttagtcatattaagctgtgtgatttaggcaccactatcccctccctctctaatcacacttctttttcctttgaagacattttttgttgaaaagttcctcagctattatttaagtgcttcaatcacatcgaaggaagtgatttaaaaagacctgcaattgcttgatcaatacaaacttaggtaaaaatagggacaatggaagaaaaagatccatgtaggtgatagctattagttgaggataggtattagactcgtatggaacttccttttttttttctggaaatgcgaagaagaagaagttgtttttgttgaatagaattagggtttgaaaaatattgatttgtaactcggtcattgatggcaaaagggcaatgtatctg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0017H17-A4Bcr/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02SLe0017H17.1" temp_strand="-" temp_description="C02SLe0017H17.1  AC215447.2 htgs_phase:3 submitted_to_sgn_as:C02SLe0017H17 sequenced_by:kribb upload_account_name:korea">
        <position start="11503" stop="10238"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="11197" g_stop="10538" g_length="660"/>
          <reference_exon_boundary r_type="cDNA" r_start="29" r_stop="688" r_length="660" r_score="0.985"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLe0017H17.1" gen_strand="-" ref_id="SGN-E724400" ref_strand="+">
        <total_alignment_score>0.985</total_alignment_score>
        <cumulative_length_of_scored_exons>660</cumulative_length_of_scored_exons>
        <coverage percentage="0.959" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0017H17.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E724400" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="11197" e_stop="10538"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCTGTTAGTTTCTATTGGGGATTTGCTTATAAGAAATTTATCTTTAAAATTGAACTTTTCTTGCAGTTCCAAAAGGGAAAAAGCGCAAAACTGACTCAGGCGCTGAGGTTTGCTTAATTCTAGACTCTATAACTCACTGTTTCTTTTTCCTTTTCGAGGTAATCGTTGACACTCTTCTTGTGTAGAGGCCCAACATTTACTTCCAAATAACATTGTTGGACTAAATCGTTATGTAAAGTTATTTACATTCTGCAGAATACTCCATTAATAACACCTCCATTTTAGTCATATTAAGCTGTGTGATTTAGGCACCACTATCCCCTCCCTCTCTAATCACACTTCTTTTTCCTTTGAAGACATTTTTTGTTGAAAAGTTCCTCAGCTATTATTTAAGTGCTTCAATCACATCGAAGGAAGTGATTTAAAAAGACCTGCAATTGCTTGATCAATACAAACTTAGGTAAAAATAGGGACAATGGAAGAAAAAGATCCATGTAGGTGATAGCTATTAGTTGAGGATAGGTATTAGACTCGTATGGAACTTCCTTTTTTTTTTCTGGTAATGCGTAGTAGTAGTAGTTGTTTTTGTTGTATAGTATTAGTGTTTGAAAGATATTGATTTGTAACTCGGTCATTGATGGCAGAAGGGCAATGTATCTG</genome_strand>
        <mrna_strand>TCTGTTAGTTTCTATTGGGGATTTGCTTATAAGAAATTTATCTTTAAAATTGAACTTTTCTTGCAGTTCCAAAAGGGAAAAAGCGCAAAACTGACTCAGGCGCTGAGGTTTGCTTAATTCTAGACTCTATAACTCACTGTTTCTTTTTCCTTTTCGAGGTAATCGTTGACACTCTTCTTGTGTAGAGGCCCAACATTTACTTCCAAATAACATTGTTGGACTAAATCGTTATGTAAAGTTATTTACATTCTGCAGAATACTCCATTAATAACACCTCCATTTTAGTCATATTAAGCTGTGTGATTTAGGCACCACTATCCCCTCCCTCTCTAATCACACTTCTTTTTCCTTTGAAGACATTTTTTGTTGAAAAGTTCCTCAGCTATTATTTAAGTGCTTCAATCACATCGAAGGAAGTGATTTAAAAAGACCTGCAATTGCTTGATCAATACAAACTTAGGTAAAAATAGGGACAATGGAAGAAAAAGATCCATGTAGGTGATAGCTATTAGTTGAGGATAGGTATTAGACTCGTATGGAACTTCCTTTTTTTTTTCTGGAAATGCGAAGAAGAAGAAGTTGTTTTTGTTGAATAGAATTAGGGTTTGAAAAATATTGATTTGTAACTCGGTCATTGATGGCAAAAGGGCAATGTATCTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0017H17-A4Bcr/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E357175" ref_strand="+" ref_description="SGN-E357175 [cLHT-17-D24]">
      <seq>tttttgaaaccgatttagaagtgggaaacaaattcctccgtcacatacggccaaaggcggaggagatactactggtcggaagtctctgattaacggaaatggttaattcaaaaaacaactcttctaccgacagcgaaaactcctccggtgacgttcccgactctaaacctagtctctactttgaaggcgagaaggttctcgcttatcatggccctcgcatctacgaagcaaaggtccaaaaagcagagctgcggaagaacgaatggagatacttcggtcattaccttggctggaacaaaaattgggatgaatgggtaggagctgaccgcttgatgaagcacactgaagacaacgtcttgaagcancaggccctggacaagaagcagggcatggagaaaagtactaaatctggacgttcagcac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0017H17-A4Bcr/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02SLe0017H17.1" temp_strand="-" temp_description="C02SLe0017H17.1  AC215447.2 htgs_phase:3 submitted_to_sgn_as:C02SLe0017H17 sequenced_by:kribb upload_account_name:korea">
        <position start="17516" stop="13464"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="17216" g_stop="16984" g_length="233"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="233" r_length="233" r_score="0.974"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="16983" i_stop="15390" i_length="1594">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.647" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="15389" g_stop="15336" g_length="54"/>
          <reference_exon_boundary r_type="cDNA" r_start="234" r_stop="287" r_length="54" r_score="0.981"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="15335" i_stop="15149" i_length="187">
            <donor d_prob="0.997" d_score="0.98"/>
            <acceptor a_prob="0.989" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="15148" g_stop="15135" g_length="14"/>
          <reference_exon_boundary r_type="cDNA" r_start="288" r_stop="301" r_length="14" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="15134" i_stop="13886" i_length="1249">
            <donor d_prob="0.000" d_score="0.00"/>
            <acceptor a_prob="0.999" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="13885" g_stop="13764" g_length="122"/>
          <reference_exon_boundary r_type="cDNA" r_start="302" r_stop="423" r_length="122" r_score="0.984"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLe0017H17.1" gen_strand="-" ref_id="SGN-E357175" ref_strand="+">
        <total_alignment_score>0.978</total_alignment_score>
        <cumulative_length_of_scored_exons>423</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0017H17.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E357175" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="17216" e_stop="16984"/>
          <exon e_start="15389" e_stop="15336"/>
          <exon e_start="15148" e_stop="15135"/>
          <exon e_start="13885" e_stop="13764"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTTTGAAACCGATAAAGAAGTGGGAAACAAATTCCTCCGTCACATACGGCCAAAGGCGGAGGAGATACTACTGGTCGGAAGTCTCGGATAAACGGAAATGGTTAACTCAAAAAACAACTCTTCTACCGACAGCGAAAATTCCTCCGGTGACGTTCCCGACTCTAAACCTAGTCTCTACTTTGAAGGCGAGAAGGTTCTCGCTTATCATGGCCCTCGCATCTACGAAGCAAAGGCACGTTTCTTGTTTTTCTCTTTTCATCTTATGCAGAAATCGCTAATTTTGTTTGGGTATACCGTAATTAATTGCCGAAATTGAATGATTAGGCCTTTTATCACACGTATCTTCCTTTGGATTATTCGTGTATCTAATTTGTCTGTAACGGTTGTGTCATATCTTCTCTGATTTATGTTTGATAATTGGTTGAGATTTTTTGTCATTTTGCTTTTCTGTTTGCTGTTAGATATGCACCACTTTGCATCCGATTGTGTGATGATTTCAGGGGAACTATTATGACTTTTGGACTGTTTCATCCATATTTAATGCTAAATTGGCGTAGAATTAGAGTTGCAAATTATACTAATCCTGTCCTGTAATCCATAATTCTGTTCGTTTTTTTAGCTTTATGAATAAATTATGGATTGTCTCTACTGTTTGATGCTTTTAGGTTTGCTTTATCATCTTAACTCATTGCTCTACTGACTCTAATCTAGACTTAGGGGTCAATCTATTGATTTTTTCTGTGGACTCCACTCTCTCTGCTCTAATGTCTGTTAAGCCTTCTCAAAGATTAGGTAAACTAAACAATTGGCAGTGTCGAAGGATGTTACATATATGAACATCCTCATATAGATTGTGGAAGGGTTCCTAAATTGATTTAGCGATCTTGAGCTAGTCTCCATCATGATTTTATTTAGATAATCTGATTTGCGCCCCATAGCAAACTTTTTGGCATGATTGTTTTCACATATCATAGAAACAATTTTTAATGTCTTATATATTCAATACATTTACACTGATTTTGTATTTTTGTGCAATCCATGTAAATATGGGTTGATCTGAGTTTAAGAACTGGGATGAATTTTGGAAAATATACTTCAACTTTTGACCTATTCCAGTTACCCGATCTTCCCTGCAAATCATGTTTTTGTATGTCAAGAGAATGCAACTCTAGACAATATATGGTTCTTATACGGAGGATTGCTAGTTTCACCTCTTATAGTTATGCACTAGTGTATTTCTGACAGGATATAGTGTGTGATATGTAGGTCAGATGCACATCATGGGTTCGAATCCTACCATAGACAAAGGCCTGATATTTAAGTGGAAAAGGGTAGAGGGGCAGGTTCATTATCCACTGAGTTTTGAACCATACACCACTAGCCGTTGGAAATTTCTCAGTTATTAAAAAAAAGTACTACTCAGCTTATTGAAATTACATATTAGTGAATAATTTGAGTTGTTGGGATTAGTTTTGGCTTCGTTGATATAGGACAATTGAAGTACTAAGTTTGCAAATGTTGTTGTTATTTGTGTATTTTCTCTAAAGCTCGAACTTTACTTTGAGAATGCTTGCACTTTGCTCTTGCTTATAACTCTCAAAATCGTGTTGTTTGTTTACACTTGTGACAATTGAAAATACCAATTGTGTATAAGTTTTTTCTTACAAGAGAAAGCTTCATTTCCTCTATATGGAAAACAATTAGTGTACGGTGATATAGTGCTTGCCTTCTACAAATTGTAGCGCCCTGATGAAATCATGTTATTTAATGCTTGCTACAAGATTTTTGCGACCCTCCAATTTGATCCTTGCATTTCTTCTTTGAAGGTCCAAAAAGCAGAGCTGCGGAAGAACGAATGGAGATACTTCGTTCATTACCTTGTAAGTTTAAATTTATATCTTCTTTCACCATATGCTTTACATATGACAATTAAATTTGGTACTTCTTTAGTTAAAAGATGTGAGAAAGCTTGTAGCATAGCCTTACATTATTACCTTGTTTAAAATTTTTTCAATATTCTTAATGATATCGAGAAATAATACTCCTTTTATTTATTTTAATTTACAGGGCTGGAACAAAAAGTGAGTTTATGAAGTTACTTGTAGAAAGTTCTTAATTCAAGAGTATCTTAAATTGCTAGTCACATCAGGATTGAAAGGTTGACCAACTCATTTGAATGTTGAATGTGCTGCCTTAAAAGTTTTTTCTTTGAATGTTCTGCTCCGAAGGAGCTTGGCCTTGAGCAAGAGGCATAGAGTAATTTGATGCTTCCTTGTTGATTATGGTGATTATTTTACAAATTATATGTGGAAGGTTGTGCTGCTCTGGATTTAAAGTGCAATTGTGAATACATAATTTTGATTTGCATAGCATCAGGTAGCACAATGAATTTGGTCTTTGGATATTAATAGCGAAGTTTTATCATTTTAACTACATGCTCCTTTTGTTTCAAATTTAGTGTTCATCTCTCCATTTTGATCTTTTGGGAGAATATTTTCATTTTCTGTAAATGGGAATGATTCGAAGATTTAATACTTTACATGGGGATCTACCTTTACTCTGATCCTTAAGCACTTTCTTTATGTTATTCTAACAAACATTTGCCAATATTTCAAATAATCCTAATTCCTATCTTCCCATATAAATTCAAACAATGATGTTGAAATAGAAAAGGACTGATAACAAGTTCTCTCAGCTTTTTTGCCTGTGTAATAAGGACTAATTCAATAGACATTCATGATTTCACTGTTCTCCCCCTGTCTTATTGTGCATGGTACTTTTACTATTTAGATACTCAAGCTCTTTCTTTGGACTACAGTTTTTTTACAATATTTTTAATTTAAAAAATCATTTACAAATGTTTGTAACTTCGTAAATTTATTCAAAAAAATTAAGCAATTGATGGTTAAATTTTTGCTCTGAAATTACATTCTATGACTTGGTACTCCAAACCCCATAAACTCTTTTCAGCGACAGGAAATAATAGCTATTTTACATTGCTGTGTACGTCTGGTTCTGCAGCAAATGTGAAGCTAGTTTTTTGTGTACTTCAATCTGAATTTTGGATGTTGTAGTTGTTAACTCTCTGATTTAAAAATAATGATTTACTTTCTTTTTTAGTCTGTTTCAGAAAGATTGACCCATTTCCTTTTTTGGCAACACTTTAGTTTTAGCTTTCCATGTAGCATGTTTAGGAACATAAGATTAGAGGACATTTTGGTACATTTGACATAAATTAAACTAGGTCCTTTTTTTTTAAACAGAGGGAGTATTTGTTGATTGTAAGTATATTCTGCAAACCCTAATTCCTGAAACTATGTCTTGTAACAGTTGGGATGAATGGGTAGGAGCTGACCGCTTGATGAAGCACACAGAAGACAACGTCTTGAAGCAGCAGGCCCTGGACAAGAAGCAGGGCATGGAGAAAAGTACTAAATCTGGACGTTCAGCAC</genome_strand>
        <mrna_strand>TTTTTGAAACCGATTTAGAAGTGGGAAACAAATTCCTCCGTCACATACGGCCAAAGGCGGAGGAGATACTACTGGTCGGAAGTCTCTGATTAACGGAAATGGTTAATTCAAAAAACAACTCTTCTACCGACAGCGAAAACTCCTCCGGTGACGTTCCCGACTCTAAACCTAGTCTCTACTTTGAAGGCGAGAAGGTTCTCGCTTATCATGGCCCTCGCATCTACGAAGCAAAG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTCCAAAAAGCAGAGCTGCGGAAGAACGAATGGAGATACTTCGGTCATTACCTT...........................................................................................................................................................................................GGCTGGAACAAAAA.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTGGGATGAATGGGTAGGAGCTGACCGCTTGATGAAGCACACTGAAGACAACGTCTTGAAGCANCAGGCCCTGGACAAGAAGCAGGGCATGGAGAAAAGTACTAAATCTGGACGTTCAGCAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0017H17-A4Bcr/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E207622" ref_strand="+" ref_description="SGN-E207622 [cLEC-32-K12]">
      <seq>aaaggttcacgactcacgcgtgtagagatccagtggtcccttttttttttgaaaccgataaagaagtgggaaacaaattcctccgtcacatacggccaaaggcggaggagatactactggtcggaagtctcggataaacggaaatggttaactcaaaaaacaactcttctaccgacagcgaaaattcctccggtgacgttcccgactctaaacctagtctctactttgaaggcgagaaggttctcgcttatcatggccctcgcatctacgaagcaaaggtccaaaaagcagagctgcggaagaacgaatggagatacttcgttcattaccttggctggaacaaaaattgggatgaatgggtaggagctgaccgcttgatgaagcacacagaagacaacgtcttgaagcagcaggccctggacaagaagcagggcatggagaaaagtactaaatctggacgttcagca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0017H17-A4Bcr/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02SLe0017H17.1" temp_strand="-" temp_description="C02SLe0017H17.1  AC215447.2 htgs_phase:3 submitted_to_sgn_as:C02SLe0017H17 sequenced_by:kribb upload_account_name:korea">
        <position start="17560" stop="13465"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="17260" g_stop="16984" g_length="277"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="278" r_length="278" r_score="0.993"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="16983" i_stop="15390" i_length="1594">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.647" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="15389" g_stop="15336" g_length="54"/>
          <reference_exon_boundary r_type="cDNA" r_start="279" r_stop="332" r_length="54" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="15335" i_stop="15149" i_length="187">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.989" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="15148" g_stop="15135" g_length="14"/>
          <reference_exon_boundary r_type="cDNA" r_start="333" r_stop="346" r_length="14" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="15134" i_stop="13886" i_length="1249">
            <donor d_prob="0.000" d_score="0.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="13885" g_stop="13765" g_length="121"/>
          <reference_exon_boundary r_type="cDNA" r_start="347" r_stop="467" r_length="121" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLe0017H17.1" gen_strand="-" ref_id="SGN-E207622" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>466</cumulative_length_of_scored_exons>
        <coverage percentage="0.998" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0017H17.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E207622" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="17260" e_stop="16984"/>
          <exon e_start="15389" e_stop="15336"/>
          <exon e_start="15148" e_stop="15135"/>
          <exon e_start="13885" e_stop="13765"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAGGTTCACGACTCACGCGTGTAGAGATCCAGTGGTCCC-TTTTTTTTTGAAACCGATAAAGAAGTGGGAAACAAATTCCTCCGTCACATACGGCCAAAGGCGGAGGAGATACTACTGGTCGGAAGTCTCGGATAAACGGAAATGGTTAACTCAAAAAACAACTCTTCTACCGACAGCGAAAATTCCTCCGGTGACGTTCCCGACTCTAAACCTAGTCTCTACTTTGAAGGCGAGAAGGTTCTCGCTTATCATGGCCCTCGCATCTACGAAGCAAAGGCACGTTTCTTGTTTTTCTCTTTTCATCTTATGCAGAAATCGCTAATTTTGTTTGGGTATACCGTAATTAATTGCCGAAATTGAATGATTAGGCCTTTTATCACACGTATCTTCCTTTGGATTATTCGTGTATCTAATTTGTCTGTAACGGTTGTGTCATATCTTCTCTGATTTATGTTTGATAATTGGTTGAGATTTTTTGTCATTTTGCTTTTCTGTTTGCTGTTAGATATGCACCACTTTGCATCCGATTGTGTGATGATTTCAGGGGAACTATTATGACTTTTGGACTGTTTCATCCATATTTAATGCTAAATTGGCGTAGAATTAGAGTTGCAAATTATACTAATCCTGTCCTGTAATCCATAATTCTGTTCGTTTTTTTAGCTTTATGAATAAATTATGGATTGTCTCTACTGTTTGATGCTTTTAGGTTTGCTTTATCATCTTAACTCATTGCTCTACTGACTCTAATCTAGACTTAGGGGTCAATCTATTGATTTTTTCTGTGGACTCCACTCTCTCTGCTCTAATGTCTGTTAAGCCTTCTCAAAGATTAGGTAAACTAAACAATTGGCAGTGTCGAAGGATGTTACATATATGAACATCCTCATATAGATTGTGGAAGGGTTCCTAAATTGATTTAGCGATCTTGAGCTAGTCTCCATCATGATTTTATTTAGATAATCTGATTTGCGCCCCATAGCAAACTTTTTGGCATGATTGTTTTCACATATCATAGAAACAATTTTTAATGTCTTATATATTCAATACATTTACACTGATTTTGTATTTTTGTGCAATCCATGTAAATATGGGTTGATCTGAGTTTAAGAACTGGGATGAATTTTGGAAAATATACTTCAACTTTTGACCTATTCCAGTTACCCGATCTTCCCTGCAAATCATGTTTTTGTATGTCAAGAGAATGCAACTCTAGACAATATATGGTTCTTATACGGAGGATTGCTAGTTTCACCTCTTATAGTTATGCACTAGTGTATTTCTGACAGGATATAGTGTGTGATATGTAGGTCAGATGCACATCATGGGTTCGAATCCTACCATAGACAAAGGCCTGATATTTAAGTGGAAAAGGGTAGAGGGGCAGGTTCATTATCCACTGAGTTTTGAACCATACACCACTAGCCGTTGGAAATTTCTCAGTTATTAAAAAAAAGTACTACTCAGCTTATTGAAATTACATATTAGTGAATAATTTGAGTTGTTGGGATTAGTTTTGGCTTCGTTGATATAGGACAATTGAAGTACTAAGTTTGCAAATGTTGTTGTTATTTGTGTATTTTCTCTAAAGCTCGAACTTTACTTTGAGAATGCTTGCACTTTGCTCTTGCTTATAACTCTCAAAATCGTGTTGTTTGTTTACACTTGTGACAATTGAAAATACCAATTGTGTATAAGTTTTTTCTTACAAGAGAAAGCTTCATTTCCTCTATATGGAAAACAATTAGTGTACGGTGATATAGTGCTTGCCTTCTACAAATTGTAGCGCCCTGATGAAATCATGTTATTTAATGCTTGCTACAAGATTTTTGCGACCCTCCAATTTGATCCTTGCATTTCTTCTTTGAAGGTCCAAAAAGCAGAGCTGCGGAAGAACGAATGGAGATACTTCGTTCATTACCTTGTAAGTTTAAATTTATATCTTCTTTCACCATATGCTTTACATATGACAATTAAATTTGGTACTTCTTTAGTTAAAAGATGTGAGAAAGCTTGTAGCATAGCCTTACATTATTACCTTGTTTAAAATTTTTTCAATATTCTTAATGATATCGAGAAATAATACTCCTTTTATTTATTTTAATTTACAGGGCTGGAACAAAAAGTGAGTTTATGAAGTTACTTGTAGAAAGTTCTTAATTCAAGAGTATCTTAAATTGCTAGTCACATCAGGATTGAAAGGTTGACCAACTCATTTGAATGTTGAATGTGCTGCCTTAAAAGTTTTTTCTTTGAATGTTCTGCTCCGAAGGAGCTTGGCCTTGAGCAAGAGGCATAGAGTAATTTGATGCTTCCTTGTTGATTATGGTGATTATTTTACAAATTATATGTGGAAGGTTGTGCTGCTCTGGATTTAAAGTGCAATTGTGAATACATAATTTTGATTTGCATAGCATCAGGTAGCACAATGAATTTGGTCTTTGGATATTAATAGCGAAGTTTTATCATTTTAACTACATGCTCCTTTTGTTTCAAATTTAGTGTTCATCTCTCCATTTTGATCTTTTGGGAGAATATTTTCATTTTCTGTAAATGGGAATGATTCGAAGATTTAATACTTTACATGGGGATCTACCTTTACTCTGATCCTTAAGCACTTTCTTTATGTTATTCTAACAAACATTTGCCAATATTTCAAATAATCCTAATTCCTATCTTCCCATATAAATTCAAACAATGATGTTGAAATAGAAAAGGACTGATAACAAGTTCTCTCAGCTTTTTTGCCTGTGTAATAAGGACTAATTCAATAGACATTCATGATTTCACTGTTCTCCCCCTGTCTTATTGTGCATGGTACTTTTACTATTTAGATACTCAAGCTCTTTCTTTGGACTACAGTTTTTTTACAATATTTTTAATTTAAAAAATCATTTACAAATGTTTGTAACTTCGTAAATTTATTCAAAAAAATTAAGCAATTGATGGTTAAATTTTTGCTCTGAAATTACATTCTATGACTTGGTACTCCAAACCCCATAAACTCTTTTCAGCGACAGGAAATAATAGCTATTTTACATTGCTGTGTACGTCTGGTTCTGCAGCAAATGTGAAGCTAGTTTTTTGTGTACTTCAATCTGAATTTTGGATGTTGTAGTTGTTAACTCTCTGATTTAAAAATAATGATTTACTTTCTTTTTTAGTCTGTTTCAGAAAGATTGACCCATTTCCTTTTTTGGCAACACTTTAGTTTTAGCTTTCCATGTAGCATGTTTAGGAACATAAGATTAGAGGACATTTTGGTACATTTGACATAAATTAAACTAGGTCCTTTTTTTTTAAACAGAGGGAGTATTTGTTGATTGTAAGTATATTCTGCAAACCCTAATTCCTGAAACTATGTCTTGTAACAGTTGGGATGAATGGGTAGGAGCTGACCGCTTGATGAAGCACACAGAAGACAACGTCTTGAAGCAGCAGGCCCTGGACAAGAAGCAGGGCATGGAGAAAAGTACTAAATCTGGACGTTCAGCA</genome_strand>
        <mrna_strand>AAAGGTTCACGACTCACGCGTGTAGAGATCCAGTGGTCCCTTTTTTTTTTGAAACCGATAAAGAAGTGGGAAACAAATTCCTCCGTCACATACGGCCAAAGGCGGAGGAGATACTACTGGTCGGAAGTCTCGGATAAACGGAAATGGTTAACTCAAAAAACAACTCTTCTACCGACAGCGAAAATTCCTCCGGTGACGTTCCCGACTCTAAACCTAGTCTCTACTTTGAAGGCGAGAAGGTTCTCGCTTATCATGGCCCTCGCATCTACGAAGCAAAG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTCCAAAAAGCAGAGCTGCGGAAGAACGAATGGAGATACTTCGTTCATTACCTT...........................................................................................................................................................................................GGCTGGAACAAAAA.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTGGGATGAATGGGTAGGAGCTGACCGCTTGATGAAGCACACAGAAGACAACGTCTTGAAGCAGCAGGCCCTGGACAAGAAGCAGGGCATGGAGAAAAGTACTAAATCTGGACGTTCAGCA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0017H17-A4Bcr/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E371139" ref_strand="+" ref_description="SGN-E371139 [TUS-28-J7](-)">
      <seq>taggggtcaatctattgatttttttctgtggactccactctctctgctctaatgtctgttaagccttctcaaagattaggtaaactaaacaattggcagtgtcgaaggatgttacatatatgaacatcctcatatagattgtggaagggttcctaaattgatttagcgatcttgagctagtctccatcatgattttatttagataatctgatttgcgccccatagcaaactttttggcatgattgttttcacatatcatagaaacaatttttaatgtcttatatattcaatacatttacactgattttgtatttttgtgcaatccatgtaaatatgggttgatctgagtttaagaactgggatgaattttggaaaatatacttcaacttttgacctattccagttacccgatcttccctgcaaatcatgtttttgtatgtcaagagaatgcaactctagacaatatatggttcttatacggaggattgctagtttcacctcttatagttatgcactagtgtatttctgacaggatatagtgtgtgatatgtaggtcagatgcacatcatgggttcgaatcctaccatagacaaaggcctgatatttaagtggaaaagggtagaggggcaggttcattatccactgagttttgaaccatacaccactagccgttggaaatttctcagttattaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0017H17-A4Bcr/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02SLe0017H17.1" temp_strand="-" temp_description="C02SLe0017H17.1  AC215447.2 htgs_phase:3 submitted_to_sgn_as:C02SLe0017H17 sequenced_by:kribb upload_account_name:korea">
        <position start="16801" stop="15504"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="16501" g_stop="15804" g_length="698"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="699" r_length="699" r_score="0.997"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLe0017H17.1" gen_strand="-" ref_id="SGN-E371139" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>698</cumulative_length_of_scored_exons>
        <coverage percentage="0.997" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0017H17.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E371139" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="16501" e_stop="15804"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TAGGGGTCAATCTATTGA-TTTTTTCTGTGGACTCCACTCTCTCTGCTCTAATGTCTGTTAAGCCTTCTCAAAGATTAGGTAAACTAAACAATTGGCAGTGTCGAAGGATGTTACATATATGAACATCCTCATATAGATTGTGGAAGGGTTCCTAAATTGATTTAGCGATCTTGAGCTAGTCTCCATCATGATTTTATTTAGATAATCTGATTTGCGCCCCATAGCAAACTTTTTGGCATGATTGTTTTCACATATCATAGAAACAATTTTTAATGTCTTATATATTCAATACATTTACACTGATTTTGTATTTTTGTGCAATCCATGTAAATATGGGTTGATCTGAGTTTAAGAACTGGGATGAATTTTGGAAAATATACTTCAACTTTTGACCTATTCCAGTTACCCGATCTTCCCTGCAAATCATGTTTTTGTATGTCAAGAGAATGCAACTCTAGACAATATATGGTTCTTATACGGAGGATTGCTAGTTTCACCTCTTATAGTTATGCACTAGTGTATTTCTGACAGGATATAGTGTGTGATATGTAGGTCAGATGCACATCATGGGTTCGAATCCTACCATAGACAAAGGCCTGATATTTAAGTGGAAAAGGGTAGAGGGGCAGGTTCATTATCCACTGAGTTTTGAACCATACACCACTAGCCGTTGGAAATTTCTCAGTTATTAAAAAAAA</genome_strand>
        <mrna_strand>TAGGGGTCAATCTATTGATTTTTTTCTGTGGACTCCACTCTCTCTGCTCTAATGTCTGTTAAGCCTTCTCAAAGATTAGGTAAACTAAACAATTGGCAGTGTCGAAGGATGTTACATATATGAACATCCTCATATAGATTGTGGAAGGGTTCCTAAATTGATTTAGCGATCTTGAGCTAGTCTCCATCATGATTTTATTTAGATAATCTGATTTGCGCCCCATAGCAAACTTTTTGGCATGATTGTTTTCACATATCATAGAAACAATTTTTAATGTCTTATATATTCAATACATTTACACTGATTTTGTATTTTTGTGCAATCCATGTAAATATGGGTTGATCTGAGTTTAAGAACTGGGATGAATTTTGGAAAATATACTTCAACTTTTGACCTATTCCAGTTACCCGATCTTCCCTGCAAATCATGTTTTTGTATGTCAAGAGAATGCAACTCTAGACAATATATGGTTCTTATACGGAGGATTGCTAGTTTCACCTCTTATAGTTATGCACTAGTGTATTTCTGACAGGATATAGTGTGTGATATGTAGGTCAGATGCACATCATGGGTTCGAATCCTACCATAGACAAAGGCCTGATATTTAAGTGGAAAAGGGTAGAGGGGCAGGTTCATTATCCACTGAGTTTTGAACCATACACCACTAGCCGTTGGAAATTTCTCAGTTATTAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0017H17-A4Bcr/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E272054" ref_strand="+" ref_description="SGN-E272054 [cLEM-8-B12]">
      <seq>gctaattttgtttgggtataccgtaattaattgccgaaattgaatgattaggccttttatcacacgtatcttcctttggattattcgtgtatctaatttgtctgtaacggttgtgtcatatcttctctgatttatgtttgataattggttgagattttttgtcattttgcttttctgtttgctgttagatatgcaccactttgcatccgattgtgtgatgatttcaggggaactattatgacttttggactgtttcatccatatttaatgctaaattggcgtagaattagagttgcaaattatactaatcctgtcctgtaatccataattctgttcgtttttttagctttatgaataaattatggattgtctctactgtttgatgcttttaagtttgctttatcatcttaactcattgctctactgactctaatctagacttaggggtcaatctattgatttttttctgtggactccactctctctgctctaatgtctgttaagccttctcaaagattaggtaaactaaacaattggcagtgtcgaaggatgttacatatatgaacatcctcatatagatt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0017H17-A4Bcr/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02SLe0017H17.1" temp_strand="-" temp_description="C02SLe0017H17.1  AC215447.2 htgs_phase:3 submitted_to_sgn_as:C02SLe0017H17 sequenced_by:kribb upload_account_name:korea">
        <position start="17242" stop="16063"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="16942" g_stop="16363" g_length="580"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="581" r_length="581" r_score="0.995"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLe0017H17.1" gen_strand="-" ref_id="SGN-E272054" ref_strand="+">
        <total_alignment_score>0.995</total_alignment_score>
        <cumulative_length_of_scored_exons>580</cumulative_length_of_scored_exons>
        <coverage percentage="0.998" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0017H17.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E272054" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="16942" e_stop="16363"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCTAATTTTGTTTGGGTATACCGTAATTAATTGCCGAAATTGAATGATTAGGCCTTTTATCACACGTATCTTCCTTTGGATTATTCGTGTATCTAATTTGTCTGTAACGGTTGTGTCATATCTTCTCTGATTTATGTTTGATAATTGGTTGAGATTTTTTGTCATTTTGCTTTTCTGTTTGCTGTTAGATATGCACCACTTTGCATCCGATTGTGTGATGATTTCAGGGGAACTATTATGACTTTTGGACTGTTTCATCCATATTTAATGCTAAATTGGCGTAGAATTAGAGTTGCAAATTATACTAATCCTGTCCTGTAATCCATAATTCTGTTCGTTTTTTTAGCTTTATGAATAAATTATGGATTGTCTCTACTGTTTGATGCTTTTAGGTTTGCTTTATCATCTTAACTCATTGCTCTACTGACTCTAATCTAGACTTAGGGGTCAATCTATTGA-TTTTTTCTGTGGACTCCACTCTCTCTGCTCTAATGTCTGTTAAGCCTTCTCAAAGATTAGGTAAACTAAACAATTGGCAGTGTCGAAGGATGTTACATATATGAACATCCTCATATAGATT</genome_strand>
        <mrna_strand>GCTAATTTTGTTTGGGTATACCGTAATTAATTGCCGAAATTGAATGATTAGGCCTTTTATCACACGTATCTTCCTTTGGATTATTCGTGTATCTAATTTGTCTGTAACGGTTGTGTCATATCTTCTCTGATTTATGTTTGATAATTGGTTGAGATTTTTTGTCATTTTGCTTTTCTGTTTGCTGTTAGATATGCACCACTTTGCATCCGATTGTGTGATGATTTCAGGGGAACTATTATGACTTTTGGACTGTTTCATCCATATTTAATGCTAAATTGGCGTAGAATTAGAGTTGCAAATTATACTAATCCTGTCCTGTAATCCATAATTCTGTTCGTTTTTTTAGCTTTATGAATAAATTATGGATTGTCTCTACTGTTTGATGCTTTTAAGTTTGCTTTATCATCTTAACTCATTGCTCTACTGACTCTAATCTAGACTTAGGGGTCAATCTATTGATTTTTTTCTGTGGACTCCACTCTCTCTGCTCTAATGTCTGTTAAGCCTTCTCAAAGATTAGGTAAACTAAACAATTGGCAGTGTCGAAGGATGTTACATATATGAACATCCTCATATAGATT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0017H17-A4Bcr/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E551257" ref_strand="+" ref_description="SGN-E551257 [TUS-11-C13]">
      <seq>attttgtttgggtataccgtaattaattgcccaaattgaatgattaggccttttatcacacgtatcttcctttggattaggcgggggtctaatttgtctgtaacggttgtgtcatatcttctctgatttatgtttgataattggttgagattttttgtcattttgcttttctgtttgctgttagatatgcaccactttgcatccgattgtgtgatgatttcaggggaactattatgacttttggactgtttcatccatatttaatgctaaattggcgtagaattagagttgcaaattatactaatcctgtcctgtaatccataattctgttcgtttttttagctttatgaataaattatggattgtctctactgtttgatgcttttaggtttgctttatcatcttaactcattgctctactgactctaatctagacttaggggtcaatctattgatttttttctgtggactccactctctctgctctaatgtctgttaagccttctcacagattaggtaaactaaacaattggcagtgtcgaaggatgttacatatatgaacatcctcat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0017H17-A4Bcr/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02SLe0017H17.1" temp_strand="-" temp_description="C02SLe0017H17.1  AC215447.2 htgs_phase:3 submitted_to_sgn_as:C02SLe0017H17 sequenced_by:kribb upload_account_name:korea">
        <position start="17238" stop="16070"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="16938" g_stop="16370" g_length="569"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="570" r_length="570" r_score="0.984"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLe0017H17.1" gen_strand="-" ref_id="SGN-E551257" ref_strand="+">
        <total_alignment_score>0.984</total_alignment_score>
        <cumulative_length_of_scored_exons>569</cumulative_length_of_scored_exons>
        <coverage percentage="0.998" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0017H17.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E551257" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="16938" e_stop="16370"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATTTTGTTTGGGTATACCGTAATTAATTGCCGAAATTGAATGATTAGGCCTTTTATCACACGTATCTTCCTTTGGATTATTCGTGTATCTAATTTGTCTGTAACGGTTGTGTCATATCTTCTCTGATTTATGTTTGATAATTGGTTGAGATTTTTTGTCATTTTGCTTTTCTGTTTGCTGTTAGATATGCACCACTTTGCATCCGATTGTGTGATGATTTCAGGGGAACTATTATGACTTTTGGACTGTTTCATCCATATTTAATGCTAAATTGGCGTAGAATTAGAGTTGCAAATTATACTAATCCTGTCCTGTAATCCATAATTCTGTTCGTTTTTTTAGCTTTATGAATAAATTATGGATTGTCTCTACTGTTTGATGCTTTTAGGTTTGCTTTATCATCTTAACTCATTGCTCTACTGACTCTAATCTAGACTTAGGGGTCAATCTATTGA-TTTTTTCTGTGGACTCCACTCTCTCTGCTCTAATGTCTGTTAAGCCTTCTCAAAGATTAGGTAAACTAAACAATTGGCAGTGTCGAAGGATGTTACATATATGAACATCCTCAT</genome_strand>
        <mrna_strand>ATTTTGTTTGGGTATACCGTAATTAATTGCCCAAATTGAATGATTAGGCCTTTTATCACACGTATCTTCCTTTGGATTAGGCGGGGGTCTAATTTGTCTGTAACGGTTGTGTCATATCTTCTCTGATTTATGTTTGATAATTGGTTGAGATTTTTTGTCATTTTGCTTTTCTGTTTGCTGTTAGATATGCACCACTTTGCATCCGATTGTGTGATGATTTCAGGGGAACTATTATGACTTTTGGACTGTTTCATCCATATTTAATGCTAAATTGGCGTAGAATTAGAGTTGCAAATTATACTAATCCTGTCCTGTAATCCATAATTCTGTTCGTTTTTTTAGCTTTATGAATAAATTATGGATTGTCTCTACTGTTTGATGCTTTTAGGTTTGCTTTATCATCTTAACTCATTGCTCTACTGACTCTAATCTAGACTTAGGGGTCAATCTATTGATTTTTTTCTGTGGACTCCACTCTCTCTGCTCTAATGTCTGTTAAGCCTTCTCACAGATTAGGTAAACTAAACAATTGGCAGTGTCGAAGGATGTTACATATATGAACATCCTCAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0017H17-A4Bcr/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E688206" ref_strand="+" ref_description="SGN-E688206 [t3_tus_11_c13]">
      <seq>attttgtttgggtataccgtaattaattgccgaaattgaatgattaggccttttatcacacgtatcttcctttggattaggcggggggctaatttgtctgtaacggttgtgtcatatcttctctgatttatgtttgataattggttgagattttttgtcattttgcttttctgtttgctgttagatatgcaccactttgcatccgattgtgtgatgatttcaggggaactattatgacttttggactgtttcatccatatttaatgctaaattggcgtagaattagagttgcaaattatactaatcctgtcctgtaatccataattctgttcgtttttttagctttatgaataaattatggattgtctctactgtttgatgcttttaggtttgctttatcatcttaactcattgctctactgactctaatctagacttaggggtcaatctattgatttttttctgtggactccactctctctgctctaatgtctgttaagccttctcacagattaggtaaactaaacaattggcagtgtcgaaggatgttacatatatgaacatcctcat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0017H17-A4Bcr/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02SLe0017H17.1" temp_strand="-" temp_description="C02SLe0017H17.1  AC215447.2 htgs_phase:3 submitted_to_sgn_as:C02SLe0017H17 sequenced_by:kribb upload_account_name:korea">
        <position start="17238" stop="16070"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="16938" g_stop="16370" g_length="569"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="570" r_length="570" r_score="0.984"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLe0017H17.1" gen_strand="-" ref_id="SGN-E688206" ref_strand="+">
        <total_alignment_score>0.984</total_alignment_score>
        <cumulative_length_of_scored_exons>569</cumulative_length_of_scored_exons>
        <coverage percentage="0.998" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0017H17.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E688206" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="16938" e_stop="16370"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATTTTGTTTGGGTATACCGTAATTAATTGCCGAAATTGAATGATTAGGCCTTTTATCACACGTATCTTCCTTTGGATTATTCGTGTATCTAATTTGTCTGTAACGGTTGTGTCATATCTTCTCTGATTTATGTTTGATAATTGGTTGAGATTTTTTGTCATTTTGCTTTTCTGTTTGCTGTTAGATATGCACCACTTTGCATCCGATTGTGTGATGATTTCAGGGGAACTATTATGACTTTTGGACTGTTTCATCCATATTTAATGCTAAATTGGCGTAGAATTAGAGTTGCAAATTATACTAATCCTGTCCTGTAATCCATAATTCTGTTCGTTTTTTTAGCTTTATGAATAAATTATGGATTGTCTCTACTGTTTGATGCTTTTAGGTTTGCTTTATCATCTTAACTCATTGCTCTACTGACTCTAATCTAGACTTAGGGGTCAATCTATTGA-TTTTTTCTGTGGACTCCACTCTCTCTGCTCTAATGTCTGTTAAGCCTTCTCAAAGATTAGGTAAACTAAACAATTGGCAGTGTCGAAGGATGTTACATATATGAACATCCTCAT</genome_strand>
        <mrna_strand>ATTTTGTTTGGGTATACCGTAATTAATTGCCGAAATTGAATGATTAGGCCTTTTATCACACGTATCTTCCTTTGGATTAGGCGGGGGGCTAATTTGTCTGTAACGGTTGTGTCATATCTTCTCTGATTTATGTTTGATAATTGGTTGAGATTTTTTGTCATTTTGCTTTTCTGTTTGCTGTTAGATATGCACCACTTTGCATCCGATTGTGTGATGATTTCAGGGGAACTATTATGACTTTTGGACTGTTTCATCCATATTTAATGCTAAATTGGCGTAGAATTAGAGTTGCAAATTATACTAATCCTGTCCTGTAATCCATAATTCTGTTCGTTTTTTTAGCTTTATGAATAAATTATGGATTGTCTCTACTGTTTGATGCTTTTAGGTTTGCTTTATCATCTTAACTCATTGCTCTACTGACTCTAATCTAGACTTAGGGGTCAATCTATTGATTTTTTTCTGTGGACTCCACTCTCTCTGCTCTAATGTCTGTTAAGCCTTCTCACAGATTAGGTAAACTAAACAATTGGCAGTGTCGAAGGATGTTACATATATGAACATCCTCAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0017H17-A4Bcr/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E371140" ref_strand="+" ref_description="SGN-E371140 [TUS-28-J7]">
      <seq>gctaattttgtttgggtataccgtaattaattgccgaaattgaatgattaggccttttatcacacgtatcttcctttggattattcgtgtatctaatttgtctgtaacggttgtgtcatatcttctctgatttatgtttgataattggttgagattttttgtcattttgcttttctgtttgctgttagatatgcaccactttgcatccgattgtgtgatgatttcaggggaactattatgacttttggactgtttcatccatatttaatgctaaattggcgtagaattagagttgcaaattatactaatcctgtcctgtaatccataattctgttcgtttttttagctttatgaataaattatggattgtctctactgtttgatgcttttaggtttgctttatcatcttaactcattgctctactgactctaatctagacttaggggtcaatctattgatttttttctgtggactccactctctctgctctaatgtctgttaagccttctcaaagattaggtaaactaaacaattggcagtgtcgaaggatgttacatatattaaca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0017H17-A4Bcr/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02SLe0017H17.1" temp_strand="-" temp_description="C02SLe0017H17.1  AC215447.2 htgs_phase:3 submitted_to_sgn_as:C02SLe0017H17 sequenced_by:kribb upload_account_name:korea">
        <position start="17242" stop="16077"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="16942" g_stop="16377" g_length="566"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="567" r_length="567" r_score="0.995"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLe0017H17.1" gen_strand="-" ref_id="SGN-E371140" ref_strand="+">
        <total_alignment_score>0.995</total_alignment_score>
        <cumulative_length_of_scored_exons>566</cumulative_length_of_scored_exons>
        <coverage percentage="0.998" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0017H17.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E371140" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="16942" e_stop="16377"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCTAATTTTGTTTGGGTATACCGTAATTAATTGCCGAAATTGAATGATTAGGCCTTTTATCACACGTATCTTCCTTTGGATTATTCGTGTATCTAATTTGTCTGTAACGGTTGTGTCATATCTTCTCTGATTTATGTTTGATAATTGGTTGAGATTTTTTGTCATTTTGCTTTTCTGTTTGCTGTTAGATATGCACCACTTTGCATCCGATTGTGTGATGATTTCAGGGGAACTATTATGACTTTTGGACTGTTTCATCCATATTTAATGCTAAATTGGCGTAGAATTAGAGTTGCAAATTATACTAATCCTGTCCTGTAATCCATAATTCTGTTCGTTTTTTTAGCTTTATGAATAAATTATGGATTGTCTCTACTGTTTGATGCTTTTAGGTTTGCTTTATCATCTTAACTCATTGCTCTACTGACTCTAATCTAGACTTAGGGGTCAATCTATTGA-TTTTTTCTGTGGACTCCACTCTCTCTGCTCTAATGTCTGTTAAGCCTTCTCAAAGATTAGGTAAACTAAACAATTGGCAGTGTCGAAGGATGTTACATATATGAACA</genome_strand>
        <mrna_strand>GCTAATTTTGTTTGGGTATACCGTAATTAATTGCCGAAATTGAATGATTAGGCCTTTTATCACACGTATCTTCCTTTGGATTATTCGTGTATCTAATTTGTCTGTAACGGTTGTGTCATATCTTCTCTGATTTATGTTTGATAATTGGTTGAGATTTTTTGTCATTTTGCTTTTCTGTTTGCTGTTAGATATGCACCACTTTGCATCCGATTGTGTGATGATTTCAGGGGAACTATTATGACTTTTGGACTGTTTCATCCATATTTAATGCTAAATTGGCGTAGAATTAGAGTTGCAAATTATACTAATCCTGTCCTGTAATCCATAATTCTGTTCGTTTTTTTAGCTTTATGAATAAATTATGGATTGTCTCTACTGTTTGATGCTTTTAGGTTTGCTTTATCATCTTAACTCATTGCTCTACTGACTCTAATCTAGACTTAGGGGTCAATCTATTGATTTTTTTCTGTGGACTCCACTCTCTCTGCTCTAATGTCTGTTAAGCCTTCTCAAAGATTAGGTAAACTAAACAATTGGCAGTGTCGAAGGATGTTACATATATTAACA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0017H17-A4Bcr/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E202664" ref_strand="+" ref_description="SGN-E202664 [cLEC-19-J5]">
      <seq>taccctaggcataaaagggtcactgtaacgattcaaaaaaaaagaatgatataaataagaataaataggtatttaagggcataattgtcctttcacgttttaaatgaataaataaataaataagtaaataaataaaatagatttgtatttatttattttaaatgttatttgactaattcttgaattagtctcctaatccaaatagtcctctctctctcacgcttcttaactccctctctcacgtcctccatcttcctcacattatttctgacaaaacatcaacagttttcatgcttgaagaactaacaaaaattttttaagcaaaagaaaaagtaatcaaaacgtcaaggctaagagaggtttgtcgagagaggtgtacgttgaagtgaattgggagtgctttggaggagttttccgggtaacaacattaaagtttgaacatcgattaaggtatgagttttcttctctctcggtccctttccca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0017H17-A4Bcr/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02SLe0017H17.1" temp_strand="-" temp_description="C02SLe0017H17.1  AC215447.2 htgs_phase:3 submitted_to_sgn_as:C02SLe0017H17 sequenced_by:kribb upload_account_name:korea">
        <position start="32981" stop="25353"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="32681" g_stop="32219" g_length="463"/>
          <reference_exon_boundary r_type="cDNA" r_start="24" r_stop="484" r_length="461" r_score="0.907"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLe0017H17.1" gen_strand="-" ref_id="SGN-E202664" ref_strand="+">
        <total_alignment_score>0.907</total_alignment_score>
        <cumulative_length_of_scored_exons>463</cumulative_length_of_scored_exons>
        <coverage percentage="0.957" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0017H17.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E202664" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="32681" e_stop="32219"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGTAACGATTCAAAAAAGAAAGAGAATTATGTAAATAAGAATAAATAGGTATTTAAGTGCATAATTGTCCTTTCACGTTTTAAATGAATAAATAAAT--A-AA-TAAATAAATAAAACAGATTTGTATTTATTTATTTTAA-TGTTATTTGACTAATTCTTGAATTAGTCTCCTAATCCAATTAGCCCTCTCTCTCTCACGCTTCTTAACTCCCTCTCTCACGTTCTCCATCTTCCTTACATTATTTCTGCCAGAATATCAACAATTTTCATGCTTGAAGAACTCACAAAAAAAAAATTTTAAGCAAAAGAAAAAGTAATCAAAACGTCAAGGCTAAGAGAGGTTTGTTGAGTGAGGTGTACGTTGAAGTGAATTGGGAGTGGTTTGGAGGAGTTTTCCGGGCAGCAACATTTAAAGTTTGAATATCGATTAAGGTATGGGTTTCCTTCTCTCTTGGATCCTTTCCCA</genome_strand>
        <mrna_strand>TGTAACGATTCAAAAAA--AA-AGAATGATATAAATAAGAATAAATAGGTATTTAAGGGCATAATTGTCCTTTCACGTTTTAAATGAATAAATAAATAAATAAGTAAATAAATAAAATAGATTTGTATTTATTTATTTTAAATGTTATTTGACTAATTCTTGAATTAGTCTCCTAATCCAAATAGTCCTCTCTCTCTCACGCTTCTTAACTCCCTCTCTCACGTCCTCCATCTTCCTCACATTATTTCTGACAAAACATCAACAGTTTTCATGCTTGAAGAACT---AACAAAAATTTTTTAAGCAAAAGAAAAAGTAATCAAAACGTCAAGGCTAAGAGAGGTTTGTCGAGAGAGGTGTACGTTGAAGTGAATTGGGAGTGCTTTGGAGGAGTTTTCCGGGTAACAACA-TTAAAGTTTGAACATCGATTAAGGTATGAGTTTTCTTCTCTCTCGGTCCCTTTCCCA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0017H17-A4Bcr/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E311242" ref_strand="+" ref_description="SGN-E311242 [cLEZ-16-H3]">
      <seq>ttactaatttcagtaggcgttgacgacccacaccgtttacacctctgacaatatcatggaacggcatctaacggtgattaaacctagccggagcgacgaagttttagacgaagatgagcagctgcgaatcgccaaccaggtcaaagccttgttcgatgctcaagcacctaaaagactcgccaaaccaaatcgaagcgaacctgattcagtcatccccaattcccctttagaagatttccctattccagaacttgacaatctccgatctcttcaatcacagggtggtagcttttttccggaaactaattgctcggagcaagacgagtccgtggaaactcagtattacaatgagttggtttccattgacaaacagcatcacacgactggaagtgggttcataaaggtggtcaatcaaacgaatggaaacatttacgatcttcagttgaatggtggttatgagaatggtagagccaaagagttcaaaactaatccggcgacaaacgactggattccgagtaaagatgattatcaggttggattcacctcctcaaaacccagccggagcgaaggtgattagatcgaaagtg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0017H17-A4Bcr/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02SLe0017H17.1" temp_strand="+" temp_description="C02SLe0017H17.1  AC215447.2 htgs_phase:3 submitted_to_sgn_as:C02SLe0017H17 sequenced_by:kribb upload_account_name:korea">
        <position start="37223" stop="38714"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="37523" g_stop="37802" g_length="280"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="280" r_length="280" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="37803" i_stop="37874" i_length="72">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.973" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="37875" g_stop="37976" g_length="102"/>
          <reference_exon_boundary r_type="cDNA" r_start="281" r_stop="382" r_length="102" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="37977" i_stop="38123" i_length="147">
            <donor d_prob="0.689" d_score="1.00"/>
            <acceptor a_prob="0.957" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="38124" g_stop="38273" g_length="150"/>
          <reference_exon_boundary r_type="cDNA" r_start="383" r_stop="532" r_length="150" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="38274" i_stop="38359" i_length="86">
            <donor d_prob="0.839" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="38360" g_stop="38414" g_length="55"/>
          <reference_exon_boundary r_type="cDNA" r_start="533" r_stop="587" r_length="55" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLe0017H17.1" gen_strand="+" ref_id="SGN-E311242" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>587</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0017H17.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E311242" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="37523" e_stop="37802"/>
          <exon e_start="37875" e_stop="37976"/>
          <exon e_start="38124" e_stop="38273"/>
          <exon e_start="38360" e_stop="38414"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTACTAATTTCAGTAGGCGTTGACGACCCACACCGTTTACACCTCTGACAATATCATGGAACGGCATCTAACGGTGATTAAACCTAGCCGGAGCGACGAAGTTTTAGACGAAGATGAGCAGCTGCGAATCGCCAACCAGGTCAAAGCCTTGTTCGATGCTCAAGCACCTAAAAGACTCGCCAAACCAAATCGAAGCGAACCTGATTCAGTCATCCCCAATTCCCCTTTAGAAGATTTCCCTATTCCAGAACTTGACAATCTCCGATCTCTTCAATCACAGGTACTCTGCTAATTTTCCGTGCTGGTACATATTATTTTACTCTTTCTGATCACTCCTTTTGATTTTGATCAGGGTGGTAGCTTTTTTCCGGAAACTAATTGCTCGGAGCAAGACGAGTCCGTGGAAACTCAGTATTACAATGAGTTGGTTTCCATTGACAAACAGCATCACACGGTTCTCTACTCGTCTCTTTCGCACGAAACGATTTACTACTTTTGAATTTATGATTACCTTTATTTTCTGGGTTCAATTGAATCATATTCAATATAGTCTCGATCCAGGATACGGAGATTGTTTATGTTATTCACTATTTGTTGGCAGACTGGAAGTGGGTTCATAAAGGTGGTCAATCAAACGAATGGAAACATTTACGATCTTCAGTTGAATGGTGGTTATGAGAATGGTAGAGCCAAAGAGTTCAAAACTAATCCGGCGACAAACGACTGGATTCCGAGTAAAGATGATTATCAGGTTTTTGATACATCGAGTTCATTGACTCTCCATGTGTTAAATTATACGAAATAAATTTGTGTTCAGTTTTCATATGTATTGATCAGGTTGGATTCACCTCCTCAAAACCCAGCCGGAGCGAAGGTGATTAGATCGAAAGTG</genome_strand>
        <mrna_strand>TTACTAATTTCAGTAGGCGTTGACGACCCACACCGTTTACACCTCTGACAATATCATGGAACGGCATCTAACGGTGATTAAACCTAGCCGGAGCGACGAAGTTTTAGACGAAGATGAGCAGCTGCGAATCGCCAACCAGGTCAAAGCCTTGTTCGATGCTCAAGCACCTAAAAGACTCGCCAAACCAAATCGAAGCGAACCTGATTCAGTCATCCCCAATTCCCCTTTAGAAGATTTCCCTATTCCAGAACTTGACAATCTCCGATCTCTTCAATCACAG........................................................................GGTGGTAGCTTTTTTCCGGAAACTAATTGCTCGGAGCAAGACGAGTCCGTGGAAACTCAGTATTACAATGAGTTGGTTTCCATTGACAAACAGCATCACACG...................................................................................................................................................ACTGGAAGTGGGTTCATAAAGGTGGTCAATCAAACGAATGGAAACATTTACGATCTTCAGTTGAATGGTGGTTATGAGAATGGTAGAGCCAAAGAGTTCAAAACTAATCCGGCGACAAACGACTGGATTCCGAGTAAAGATGATTATCAG......................................................................................GTTGGATTCACCTCCTCAAAACCCAGCCGGAGCGAAGGTGATTAGATCGAAAGTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0017H17-A4Bcr/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E390347" ref_strand="+" ref_description="SGN-E390347 [TUS-17-C4]">
      <seq>actaatttcagtaggcgttgacgacccacaccgtttacacctctgacaatatcatggaacggcatctaacggtgattaaacctagccggagcgacgaagttttagacgaagatgagcagctgcgaatcgccaaccaggtcaaagccttgttcgatgctcaagcacctaaaagactcgccaaaccaaatcgaagcgaacctgattcagtcatccccaattcccctttagaagatttccctattccagaacttgacaatctccgatctcttcaatcacagggtggtagcttttttccggaaactaattgctcggagcaagacgagtccgtggaaactcagtattacaatgagttggtttccattgacaaacagcatcacacgactggaagtgggttcataaaggtggtcaatcaaacgaatggaaacatttacgatcttcagttgaatggtggttatgagaatggtagagccaaagagttcaaaactaatccggcgacaaacgactggattccgagtaaagatgattatcaggttggattcacctcctcaaaacccagccggagcgaaggtgattagatcgaaagtgaagaaagcaatcagctggtgaaggtggtttgttctgttctcttgaattcgtttgtttatcttgactgattgagagagaaaaatgagggatgctaggatt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0017H17-A4Bcr/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02SLe0017H17.1" temp_strand="+" temp_description="C02SLe0017H17.1  AC215447.2 htgs_phase:3 submitted_to_sgn_as:C02SLe0017H17 sequenced_by:kribb upload_account_name:korea">
        <position start="37225" stop="38813"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="37525" g_stop="37802" g_length="278"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="278" r_length="278" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="37803" i_stop="37874" i_length="72">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.973" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="37875" g_stop="37976" g_length="102"/>
          <reference_exon_boundary r_type="cDNA" r_start="279" r_stop="380" r_length="102" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="37977" i_stop="38123" i_length="147">
            <donor d_prob="0.689" d_score="1.00"/>
            <acceptor a_prob="0.957" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="38124" g_stop="38273" g_length="150"/>
          <reference_exon_boundary r_type="cDNA" r_start="381" r_stop="530" r_length="150" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="38274" i_stop="38359" i_length="86">
            <donor d_prob="0.839" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="38360" g_stop="38513" g_length="154"/>
          <reference_exon_boundary r_type="cDNA" r_start="531" r_stop="684" r_length="154" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLe0017H17.1" gen_strand="+" ref_id="SGN-E390347" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>684</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0017H17.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E390347" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="37525" e_stop="37802"/>
          <exon e_start="37875" e_stop="37976"/>
          <exon e_start="38124" e_stop="38273"/>
          <exon e_start="38360" e_stop="38513"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACTAATTTCAGTAGGCGTTGACGACCCACACCGTTTACACCTCTGACAATATCATGGAACGGCATCTAACGGTGATTAAACCTAGCCGGAGCGACGAAGTTTTAGACGAAGATGAGCAGCTGCGAATCGCCAACCAGGTCAAAGCCTTGTTCGATGCTCAAGCACCTAAAAGACTCGCCAAACCAAATCGAAGCGAACCTGATTCAGTCATCCCCAATTCCCCTTTAGAAGATTTCCCTATTCCAGAACTTGACAATCTCCGATCTCTTCAATCACAGGTACTCTGCTAATTTTCCGTGCTGGTACATATTATTTTACTCTTTCTGATCACTCCTTTTGATTTTGATCAGGGTGGTAGCTTTTTTCCGGAAACTAATTGCTCGGAGCAAGACGAGTCCGTGGAAACTCAGTATTACAATGAGTTGGTTTCCATTGACAAACAGCATCACACGGTTCTCTACTCGTCTCTTTCGCACGAAACGATTTACTACTTTTGAATTTATGATTACCTTTATTTTCTGGGTTCAATTGAATCATATTCAATATAGTCTCGATCCAGGATACGGAGATTGTTTATGTTATTCACTATTTGTTGGCAGACTGGAAGTGGGTTCATAAAGGTGGTCAATCAAACGAATGGAAACATTTACGATCTTCAGTTGAATGGTGGTTATGAGAATGGTAGAGCCAAAGAGTTCAAAACTAATCCGGCGACAAACGACTGGATTCCGAGTAAAGATGATTATCAGGTTTTTGATACATCGAGTTCATTGACTCTCCATGTGTTAAATTATACGAAATAAATTTGTGTTCAGTTTTCATATGTATTGATCAGGTTGGATTCACCTCCTCAAAACCCAGCCGGAGCGAAGGTGATTAGATCGAAAGTGAAGAAAGCAATCAGCTGGTGAAGGTGGTTTGTTCTGTTCTCTTGAATTCGTTTGTTTATCTTGACTGATTGAGAGAGAAAAATGAGGGATGCTAGGATT</genome_strand>
        <mrna_strand>ACTAATTTCAGTAGGCGTTGACGACCCACACCGTTTACACCTCTGACAATATCATGGAACGGCATCTAACGGTGATTAAACCTAGCCGGAGCGACGAAGTTTTAGACGAAGATGAGCAGCTGCGAATCGCCAACCAGGTCAAAGCCTTGTTCGATGCTCAAGCACCTAAAAGACTCGCCAAACCAAATCGAAGCGAACCTGATTCAGTCATCCCCAATTCCCCTTTAGAAGATTTCCCTATTCCAGAACTTGACAATCTCCGATCTCTTCAATCACAG........................................................................GGTGGTAGCTTTTTTCCGGAAACTAATTGCTCGGAGCAAGACGAGTCCGTGGAAACTCAGTATTACAATGAGTTGGTTTCCATTGACAAACAGCATCACACG...................................................................................................................................................ACTGGAAGTGGGTTCATAAAGGTGGTCAATCAAACGAATGGAAACATTTACGATCTTCAGTTGAATGGTGGTTATGAGAATGGTAGAGCCAAAGAGTTCAAAACTAATCCGGCGACAAACGACTGGATTCCGAGTAAAGATGATTATCAG......................................................................................GTTGGATTCACCTCCTCAAAACCCAGCCGGAGCGAAGGTGATTAGATCGAAAGTGAAGAAAGCAATCAGCTGGTGAAGGTGGTTTGTTCTGTTCTCTTGAATTCGTTTGTTTATCTTGACTGATTGAGAGAGAAAAATGAGGGATGCTAGGATT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0017H17-A4Bcr/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E207680" ref_strand="+" ref_description="SGN-E207680 [cLEC-32-H10]">
      <seq>ctaatttcagtaggcgttgacgacccacaccgtttacacctctgacaatatcatggaacggcatctaacggtgattaaacctagccggagcgacgaagttttagacgaagatgagcagctgcgaatcgccaaccaggtcaaagccttgttcgatgctcaagcacctaaaagactcgccaaaccaaatcgaagcgaacctgattcagtcatccccaattcccctttagaagatttccctattccagaacttgacaatctccgatctcttcaatcacagggtggtagcttttttccggaaactaattgctcggagcaagacgagtccgtggaaactcagtattacaatgagttggtttccattgacaaacagcatcacacgactggaagtgggttcataaaggtggtcaatcaaacgaatggaaacatttacgatcttcagttgaatggtggttatgagaatggtagagccaaagagttcaaaactaatccggcgacaaacgactggattccgagtaaagatgattatcaggttggattcacctcctcaaaacccagccggagcgaaggtgattagatcgaaagtgaagaaagcaatcagct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0017H17-A4Bcr/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02SLe0017H17.1" temp_strand="+" temp_description="C02SLe0017H17.1  AC215447.2 htgs_phase:3 submitted_to_sgn_as:C02SLe0017H17 sequenced_by:kribb upload_account_name:korea">
        <position start="37226" stop="38730"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="37526" g_stop="37802" g_length="277"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="277" r_length="277" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="37803" i_stop="37874" i_length="72">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.973" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="37875" g_stop="37976" g_length="102"/>
          <reference_exon_boundary r_type="cDNA" r_start="278" r_stop="379" r_length="102" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="37977" i_stop="38123" i_length="147">
            <donor d_prob="0.689" d_score="1.00"/>
            <acceptor a_prob="0.957" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="38124" g_stop="38273" g_length="150"/>
          <reference_exon_boundary r_type="cDNA" r_start="380" r_stop="529" r_length="150" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="38274" i_stop="38359" i_length="86">
            <donor d_prob="0.839" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="38360" g_stop="38430" g_length="71"/>
          <reference_exon_boundary r_type="cDNA" r_start="530" r_stop="600" r_length="71" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLe0017H17.1" gen_strand="+" ref_id="SGN-E207680" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>600</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0017H17.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E207680" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="37526" e_stop="37802"/>
          <exon e_start="37875" e_stop="37976"/>
          <exon e_start="38124" e_stop="38273"/>
          <exon e_start="38360" e_stop="38430"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTAATTTCAGTAGGCGTTGACGACCCACACCGTTTACACCTCTGACAATATCATGGAACGGCATCTAACGGTGATTAAACCTAGCCGGAGCGACGAAGTTTTAGACGAAGATGAGCAGCTGCGAATCGCCAACCAGGTCAAAGCCTTGTTCGATGCTCAAGCACCTAAAAGACTCGCCAAACCAAATCGAAGCGAACCTGATTCAGTCATCCCCAATTCCCCTTTAGAAGATTTCCCTATTCCAGAACTTGACAATCTCCGATCTCTTCAATCACAGGTACTCTGCTAATTTTCCGTGCTGGTACATATTATTTTACTCTTTCTGATCACTCCTTTTGATTTTGATCAGGGTGGTAGCTTTTTTCCGGAAACTAATTGCTCGGAGCAAGACGAGTCCGTGGAAACTCAGTATTACAATGAGTTGGTTTCCATTGACAAACAGCATCACACGGTTCTCTACTCGTCTCTTTCGCACGAAACGATTTACTACTTTTGAATTTATGATTACCTTTATTTTCTGGGTTCAATTGAATCATATTCAATATAGTCTCGATCCAGGATACGGAGATTGTTTATGTTATTCACTATTTGTTGGCAGACTGGAAGTGGGTTCATAAAGGTGGTCAATCAAACGAATGGAAACATTTACGATCTTCAGTTGAATGGTGGTTATGAGAATGGTAGAGCCAAAGAGTTCAAAACTAATCCGGCGACAAACGACTGGATTCCGAGTAAAGATGATTATCAGGTTTTTGATACATCGAGTTCATTGACTCTCCATGTGTTAAATTATACGAAATAAATTTGTGTTCAGTTTTCATATGTATTGATCAGGTTGGATTCACCTCCTCAAAACCCAGCCGGAGCGAAGGTGATTAGATCGAAAGTGAAGAAAGCAATCAGCT</genome_strand>
        <mrna_strand>CTAATTTCAGTAGGCGTTGACGACCCACACCGTTTACACCTCTGACAATATCATGGAACGGCATCTAACGGTGATTAAACCTAGCCGGAGCGACGAAGTTTTAGACGAAGATGAGCAGCTGCGAATCGCCAACCAGGTCAAAGCCTTGTTCGATGCTCAAGCACCTAAAAGACTCGCCAAACCAAATCGAAGCGAACCTGATTCAGTCATCCCCAATTCCCCTTTAGAAGATTTCCCTATTCCAGAACTTGACAATCTCCGATCTCTTCAATCACAG........................................................................GGTGGTAGCTTTTTTCCGGAAACTAATTGCTCGGAGCAAGACGAGTCCGTGGAAACTCAGTATTACAATGAGTTGGTTTCCATTGACAAACAGCATCACACG...................................................................................................................................................ACTGGAAGTGGGTTCATAAAGGTGGTCAATCAAACGAATGGAAACATTTACGATCTTCAGTTGAATGGTGGTTATGAGAATGGTAGAGCCAAAGAGTTCAAAACTAATCCGGCGACAAACGACTGGATTCCGAGTAAAGATGATTATCAG......................................................................................GTTGGATTCACCTCCTCAAAACCCAGCCGGAGCGAAGGTGATTAGATCGAAAGTGAAGAAAGCAATCAGCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0017H17-A4Bcr/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E245613" ref_strand="+" ref_description="SGN-E245613 [cLEF-43-J9]">
      <seq>tttcagtaggcgttgacgacccacaccgtttacacctctgacaatatcatggaacggcatctaacggtgattaaacctagccggagcgacgaagttttagacgaagatgagcagctgcgaatcgccaaccaggtcaaagccttgttcgatgctcaagcacctaaaagactcgccaaaccaaatcgaagcgaacctgattcagtcatccccaattcccctttagaagatttccctattccagaacttgacaatctccgatctcttcaatcacagggtggtagcttttttccggaaactaattgctcggagcaagacgagtccgtggaaactcagtattacaatgagttggtttccattgacaaacagcatcacacgactggaagtgggttcataaaggtggtcaatcaaacgaatggaaacatttacgatcttcagttgaatggtggttatgagaatggtagagccaaagagttcaaaactaatccggcgacaaacgactggattccgagtaaagatgattatcaggttggattcacctcctcaaaacccagccggagcgaaggtgattagatcgaaagtgaagaaagcaatcagctggt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0017H17-A4Bcr/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02SLe0017H17.1" temp_strand="+" temp_description="C02SLe0017H17.1  AC215447.2 htgs_phase:3 submitted_to_sgn_as:C02SLe0017H17 sequenced_by:kribb upload_account_name:korea">
        <position start="37230" stop="38733"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="37530" g_stop="37802" g_length="273"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="273" r_length="273" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="37803" i_stop="37874" i_length="72">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.973" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="37875" g_stop="37976" g_length="102"/>
          <reference_exon_boundary r_type="cDNA" r_start="274" r_stop="375" r_length="102" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="37977" i_stop="38123" i_length="147">
            <donor d_prob="0.689" d_score="1.00"/>
            <acceptor a_prob="0.957" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="38124" g_stop="38273" g_length="150"/>
          <reference_exon_boundary r_type="cDNA" r_start="376" r_stop="525" r_length="150" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="38274" i_stop="38359" i_length="86">
            <donor d_prob="0.839" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="38360" g_stop="38433" g_length="74"/>
          <reference_exon_boundary r_type="cDNA" r_start="526" r_stop="599" r_length="74" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLe0017H17.1" gen_strand="+" ref_id="SGN-E245613" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>599</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0017H17.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E245613" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="37530" e_stop="37802"/>
          <exon e_start="37875" e_stop="37976"/>
          <exon e_start="38124" e_stop="38273"/>
          <exon e_start="38360" e_stop="38433"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTCAGTAGGCGTTGACGACCCACACCGTTTACACCTCTGACAATATCATGGAACGGCATCTAACGGTGATTAAACCTAGCCGGAGCGACGAAGTTTTAGACGAAGATGAGCAGCTGCGAATCGCCAACCAGGTCAAAGCCTTGTTCGATGCTCAAGCACCTAAAAGACTCGCCAAACCAAATCGAAGCGAACCTGATTCAGTCATCCCCAATTCCCCTTTAGAAGATTTCCCTATTCCAGAACTTGACAATCTCCGATCTCTTCAATCACAGGTACTCTGCTAATTTTCCGTGCTGGTACATATTATTTTACTCTTTCTGATCACTCCTTTTGATTTTGATCAGGGTGGTAGCTTTTTTCCGGAAACTAATTGCTCGGAGCAAGACGAGTCCGTGGAAACTCAGTATTACAATGAGTTGGTTTCCATTGACAAACAGCATCACACGGTTCTCTACTCGTCTCTTTCGCACGAAACGATTTACTACTTTTGAATTTATGATTACCTTTATTTTCTGGGTTCAATTGAATCATATTCAATATAGTCTCGATCCAGGATACGGAGATTGTTTATGTTATTCACTATTTGTTGGCAGACTGGAAGTGGGTTCATAAAGGTGGTCAATCAAACGAATGGAAACATTTACGATCTTCAGTTGAATGGTGGTTATGAGAATGGTAGAGCCAAAGAGTTCAAAACTAATCCGGCGACAAACGACTGGATTCCGAGTAAAGATGATTATCAGGTTTTTGATACATCGAGTTCATTGACTCTCCATGTGTTAAATTATACGAAATAAATTTGTGTTCAGTTTTCATATGTATTGATCAGGTTGGATTCACCTCCTCAAAACCCAGCCGGAGCGAAGGTGATTAGATCGAAAGTGAAGAAAGCAATCAGCTGGT</genome_strand>
        <mrna_strand>TTTCAGTAGGCGTTGACGACCCACACCGTTTACACCTCTGACAATATCATGGAACGGCATCTAACGGTGATTAAACCTAGCCGGAGCGACGAAGTTTTAGACGAAGATGAGCAGCTGCGAATCGCCAACCAGGTCAAAGCCTTGTTCGATGCTCAAGCACCTAAAAGACTCGCCAAACCAAATCGAAGCGAACCTGATTCAGTCATCCCCAATTCCCCTTTAGAAGATTTCCCTATTCCAGAACTTGACAATCTCCGATCTCTTCAATCACAG........................................................................GGTGGTAGCTTTTTTCCGGAAACTAATTGCTCGGAGCAAGACGAGTCCGTGGAAACTCAGTATTACAATGAGTTGGTTTCCATTGACAAACAGCATCACACG...................................................................................................................................................ACTGGAAGTGGGTTCATAAAGGTGGTCAATCAAACGAATGGAAACATTTACGATCTTCAGTTGAATGGTGGTTATGAGAATGGTAGAGCCAAAGAGTTCAAAACTAATCCGGCGACAAACGACTGGATTCCGAGTAAAGATGATTATCAG......................................................................................GTTGGATTCACCTCCTCAAAACCCAGCCGGAGCGAAGGTGATTAGATCGAAAGTGAAGAAAGCAATCAGCTGGT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0017H17-A4Bcr/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E720446" ref_strand="+" ref_description="SGN-E720446 [FC10DD03]">
      <seq>gggcgattggcggccaatcggccgaattggacgacccacaccgtttacacctctgacaatatcatggaacggcatctaacggtgattaaacctagccggagcgacgaagttttagacgaagatgagcagctgcgaatcgccaaccaggtcaaagccttgttcgatgctcaagcacctaaaagactcgccaaaccaaatcgaagcgaacctgattcagtcatccccaattcccctttagaagatttccctattccagaacttgacaatctccgatctcttcaatcacagggtggtagcttttttccggaaactaattgctcggagcaagacgagtccgtggaaactcagtattacaatgagttggtttccattgacaaacagcatcacacgactggaagtgggttcataaaggtggtcaatcaaacgaatggaaacatttacgatcttcagttgaatggtggttatgagaatggtagagccaaagagttcaaaactaatccggcgacaaacgactggattccgagtaaagatgattatcaggtttttgatacatcgagttcattgactctccatgtgttaaattatacgaaataaatttgtgttcagttttcatatgtattgatcaggttggattcacctcctcaaaacccagccggagcgaaggtgattagatcgaaagtgaagaaagcaatcagctggtgaaggtggtttgttctgttctcttgaattcgtttgtttatcttgactgattgagagagaaaaatgagggatgctaggatttcaagacagtaagtagttgagtgttgtcgtatttttagtcgtatgatttaggtattgcctagtttctttttctccaat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0017H17-A4Bcr/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02SLe0017H17.1" temp_strand="+" temp_description="C02SLe0017H17.1  AC215447.2 htgs_phase:3 submitted_to_sgn_as:C02SLe0017H17 sequenced_by:kribb upload_account_name:korea">
        <position start="37242" stop="38891"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="37539" g_stop="37802" g_length="264"/>
          <reference_exon_boundary r_type="cDNA" r_start="25" r_stop="288" r_length="264" r_score="0.985"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="37803" i_stop="37874" i_length="72">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.973" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="37875" g_stop="37976" g_length="102"/>
          <reference_exon_boundary r_type="cDNA" r_start="289" r_stop="390" r_length="102" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="37977" i_stop="38123" i_length="147">
            <donor d_prob="0.689" d_score="1.00"/>
            <acceptor a_prob="0.957" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="38124" g_stop="38591" g_length="468"/>
          <reference_exon_boundary r_type="cDNA" r_start="391" r_stop="858" r_length="468" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLe0017H17.1" gen_strand="+" ref_id="SGN-E720446" ref_strand="+">
        <total_alignment_score>0.995</total_alignment_score>
        <cumulative_length_of_scored_exons>834</cumulative_length_of_scored_exons>
        <coverage percentage="0.972" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0017H17.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E720446" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="37539" e_stop="37802"/>
          <exon e_start="37875" e_stop="37976"/>
          <exon e_start="38124" e_stop="38591"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCGTTGACGACCCACACCGTTTACACCTCTGACAATATCATGGAACGGCATCTAACGGTGATTAAACCTAGCCGGAGCGACGAAGTTTTAGACGAAGATGAGCAGCTGCGAATCGCCAACCAGGTCAAAGCCTTGTTCGATGCTCAAGCACCTAAAAGACTCGCCAAACCAAATCGAAGCGAACCTGATTCAGTCATCCCCAATTCCCCTTTAGAAGATTTCCCTATTCCAGAACTTGACAATCTCCGATCTCTTCAATCACAGGTACTCTGCTAATTTTCCGTGCTGGTACATATTATTTTACTCTTTCTGATCACTCCTTTTGATTTTGATCAGGGTGGTAGCTTTTTTCCGGAAACTAATTGCTCGGAGCAAGACGAGTCCGTGGAAACTCAGTATTACAATGAGTTGGTTTCCATTGACAAACAGCATCACACGGTTCTCTACTCGTCTCTTTCGCACGAAACGATTTACTACTTTTGAATTTATGATTACCTTTATTTTCTGGGTTCAATTGAATCATATTCAATATAGTCTCGATCCAGGATACGGAGATTGTTTATGTTATTCACTATTTGTTGGCAGACTGGAAGTGGGTTCATAAAGGTGGTCAATCAAACGAATGGAAACATTTACGATCTTCAGTTGAATGGTGGTTATGAGAATGGTAGAGCCAAAGAGTTCAAAACTAATCCGGCGACAAACGACTGGATTCCGAGTAAAGATGATTATCAGGTTTTTGATACATCGAGTTCATTGACTCTCCATGTGTTAAATTATACGAAATAAATTTGTGTTCAGTTTTCATATGTATTGATCAGGTTGGATTCACCTCCTCAAAACCCAGCCGGAGCGAAGGTGATTAGATCGAAAGTGAAGAAAGCAATCAGCTGGTGAAGGTGGTTTGTTCTGTTCTCTTGAATTCGTTTGTTTATCTTGACTGATTGAGAGAGAAAAATGAGGGATGCTAGGATTTCAAGACAGTAAGTAGTTGAGTGTTGTCGTATTTTTAGTCGTATGATTTAGGTATTGCCTAGTTTCTTTTTCTCCAAT</genome_strand>
        <mrna_strand>AATTGGACGACCCACACCGTTTACACCTCTGACAATATCATGGAACGGCATCTAACGGTGATTAAACCTAGCCGGAGCGACGAAGTTTTAGACGAAGATGAGCAGCTGCGAATCGCCAACCAGGTCAAAGCCTTGTTCGATGCTCAAGCACCTAAAAGACTCGCCAAACCAAATCGAAGCGAACCTGATTCAGTCATCCCCAATTCCCCTTTAGAAGATTTCCCTATTCCAGAACTTGACAATCTCCGATCTCTTCAATCACAG........................................................................GGTGGTAGCTTTTTTCCGGAAACTAATTGCTCGGAGCAAGACGAGTCCGTGGAAACTCAGTATTACAATGAGTTGGTTTCCATTGACAAACAGCATCACACG...................................................................................................................................................ACTGGAAGTGGGTTCATAAAGGTGGTCAATCAAACGAATGGAAACATTTACGATCTTCAGTTGAATGGTGGTTATGAGAATGGTAGAGCCAAAGAGTTCAAAACTAATCCGGCGACAAACGACTGGATTCCGAGTAAAGATGATTATCAGGTTTTTGATACATCGAGTTCATTGACTCTCCATGTGTTAAATTATACGAAATAAATTTGTGTTCAGTTTTCATATGTATTGATCAGGTTGGATTCACCTCCTCAAAACCCAGCCGGAGCGAAGGTGATTAGATCGAAAGTGAAGAAAGCAATCAGCTGGTGAAGGTGGTTTGTTCTGTTCTCTTGAATTCGTTTGTTTATCTTGACTGATTGAGAGAGAAAAATGAGGGATGCTAGGATTTCAAGACAGTAAGTAGTTGAGTGTTGTCGTATTTTTAGTCGTATGATTTAGGTATTGCCTAGTTTCTTTTTCTCCAAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0017H17-A4Bcr/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E335034" ref_strand="+" ref_description="SGN-E335034 [cTOE-9-G20]">
      <seq>acaccgtttacacctctgaccaatatcatggaacggcatctaacggtgattaaacctagccggagccgacgaagttttagacgaagatgagcagctgcgaatcgccaaccaggtcaaagccttgttcgatgctcaagcacctaaaagactcgccaaaccaaatcgaagcgaacctgattcagtcatccccaattcccctttagaagatttccctattccagaacttgacaatctccgatctcttcaatcacagggtggtagcttttttccggaaactaattgctcggagcaagacgagtccgtggaaactcagtattacaatgagttggtttccattgacaaacagcatcacacgactggaagtgggttcataaaggtggtcaatcaaacgaatggaaacatttacgatcttcagttgaatggtggttatgagaatggtagagccaaagagttcaaaactaatccggcgacaaacgactggattccgagtaaagatgattatcaggttggattcacctcctcaaaacccagccggagcgaaggtgattagatcgaaagtgaagaaagcaatcagctggtgaaggtgggtttgttctgttctcttgaattcgtttgtttatcttgactgattgagagagaaaaatgagggatgctaggatttcaagacagtaagtagttgagtgttgtcgtatttttagtcgtatgatttaggtattgcctagtttctttttctccaatgtgtattaaacgcccagatttgcttttcttaccagagctactgtttctgcc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0017H17-A4Bcr/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02SLe0017H17.1" temp_strand="+" temp_description="C02SLe0017H17.1  AC215447.2 htgs_phase:3 submitted_to_sgn_as:C02SLe0017H17 sequenced_by:kribb upload_account_name:korea">
        <position start="37252" stop="38942"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="37552" g_stop="37802" g_length="251"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="253" r_length="253" r_score="0.984"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="37803" i_stop="37874" i_length="72">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.973" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="37875" g_stop="37976" g_length="102"/>
          <reference_exon_boundary r_type="cDNA" r_start="254" r_stop="355" r_length="102" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="37977" i_stop="38123" i_length="147">
            <donor d_prob="0.689" d_score="1.00"/>
            <acceptor a_prob="0.957" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="38124" g_stop="38273" g_length="150"/>
          <reference_exon_boundary r_type="cDNA" r_start="356" r_stop="505" r_length="150" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="38274" i_stop="38359" i_length="86">
            <donor d_prob="0.839" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="38360" g_stop="38642" g_length="283"/>
          <reference_exon_boundary r_type="cDNA" r_start="506" r_stop="789" r_length="284" r_score="0.993"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLe0017H17.1" gen_strand="+" ref_id="SGN-E335034" ref_strand="+">
        <total_alignment_score>0.992</total_alignment_score>
        <cumulative_length_of_scored_exons>786</cumulative_length_of_scored_exons>
        <coverage percentage="0.996" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0017H17.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E335034" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="37552" e_stop="37802"/>
          <exon e_start="37875" e_stop="37976"/>
          <exon e_start="38124" e_stop="38273"/>
          <exon e_start="38360" e_stop="38642"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACACCGTTTACACCTCTGA-CAATATCATGGAACGGCATCTAACGGTGATTAAACCTAGCCGGAG-CGACGAAGTTTTAGACGAAGATGAGCAGCTGCGAATCGCCAACCAGGTCAAAGCCTTGTTCGATGCTCAAGCACCTAAAAGACTCGCCAAACCAAATCGAAGCGAACCTGATTCAGTCATCCCCAATTCCCCTTTAGAAGATTTCCCTATTCCAGAACTTGACAATCTCCGATCTCTTCAATCACAGGTACTCTGCTAATTTTCCGTGCTGGTACATATTATTTTACTCTTTCTGATCACTCCTTTTGATTTTGATCAGGGTGGTAGCTTTTTTCCGGAAACTAATTGCTCGGAGCAAGACGAGTCCGTGGAAACTCAGTATTACAATGAGTTGGTTTCCATTGACAAACAGCATCACACGGTTCTCTACTCGTCTCTTTCGCACGAAACGATTTACTACTTTTGAATTTATGATTACCTTTATTTTCTGGGTTCAATTGAATCATATTCAATATAGTCTCGATCCAGGATACGGAGATTGTTTATGTTATTCACTATTTGTTGGCAGACTGGAAGTGGGTTCATAAAGGTGGTCAATCAAACGAATGGAAACATTTACGATCTTCAGTTGAATGGTGGTTATGAGAATGGTAGAGCCAAAGAGTTCAAAACTAATCCGGCGACAAACGACTGGATTCCGAGTAAAGATGATTATCAGGTTTTTGATACATCGAGTTCATTGACTCTCCATGTGTTAAATTATACGAAATAAATTTGTGTTCAGTTTTCATATGTATTGATCAGGTTGGATTCACCTCCTCAAAACCCAGCCGGAGCGAAGGTGATTAGATCGAAAGTGAAGAAAGCAATCAGCTGGTGAAGGT-GGTTTGTTCTGTTCTCTTGAATTCGTTTGTTTATCTTGACTGATTGAGAGAGAAAAATGAGGGATGCTAGGATTTCAAGACAGTAAGTAGTTGAGTGTTGTCGTATTTTTAGTCGTATGATTTAGGTATTGCCTAGTTTCTTTTTCTCCAATGTGTATTAAACGCCCAGATTTGCTTTTCTTACCAGAGCTACTGTTTCTGCC</genome_strand>
        <mrna_strand>ACACCGTTTACACCTCTGACCAATATCATGGAACGGCATCTAACGGTGATTAAACCTAGCCGGAGCCGACGAAGTTTTAGACGAAGATGAGCAGCTGCGAATCGCCAACCAGGTCAAAGCCTTGTTCGATGCTCAAGCACCTAAAAGACTCGCCAAACCAAATCGAAGCGAACCTGATTCAGTCATCCCCAATTCCCCTTTAGAAGATTTCCCTATTCCAGAACTTGACAATCTCCGATCTCTTCAATCACAG........................................................................GGTGGTAGCTTTTTTCCGGAAACTAATTGCTCGGAGCAAGACGAGTCCGTGGAAACTCAGTATTACAATGAGTTGGTTTCCATTGACAAACAGCATCACACG...................................................................................................................................................ACTGGAAGTGGGTTCATAAAGGTGGTCAATCAAACGAATGGAAACATTTACGATCTTCAGTTGAATGGTGGTTATGAGAATGGTAGAGCCAAAGAGTTCAAAACTAATCCGGCGACAAACGACTGGATTCCGAGTAAAGATGATTATCAG......................................................................................GTTGGATTCACCTCCTCAAAACCCAGCCGGAGCGAAGGTGATTAGATCGAAAGTGAAGAAAGCAATCAGCTGGTGAAGGTGGGTTTGTTCTGTTCTCTTGAATTCGTTTGTTTATCTTGACTGATTGAGAGAGAAAAATGAGGGATGCTAGGATTTCAAGACAGTAAGTAGTTGAGTGTTGTCGTATTTTTAGTCGTATGATTTAGGTATTGCCTAGTTTCTTTTTCTCCAATGTGTATTAAACGCCCAGATTTGCTTTTCTTACCAGAGCTACTGTTTCTGCC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0017H17-A4Bcr/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E249713" ref_strand="+" ref_description="SGN-E249713 [cLEF-56-L10]">
      <seq>acaccgtttacacctctgacaatatcatggaacggcatctaacggtgattaaacctagccggagcgacgaagttttagacgaagatgagcagctgcgaatcgccaaccaggtcaaagccttgttcgatgctcaagcacctaaaagactcgccaaaccaaatcgaagcgaacctgattcagtcatccccaattcccctttagaagaattccctattccagaacttgacaatctccgatctcttcaatcacagggtggtagcttttttccggaaactaattgctcggagcaagacgagtccgtggaaactcagtattacaatgagttggtttccattgacaaacagcatcacacggttctctactcgtctctttcgcacgaaacgatttactacttttgaatttatgattacctttattttctgggttcaattgaatcatattcaatatagtctcgatccaggatacggagattgtttatgttattcactatttgttggcagactggaagtgggttcataaaggtggtcaatcaaacgaatggaaacatttacgatcttcagttgaat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0017H17-A4Bcr/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02SLe0017H17.1" temp_strand="+" temp_description="C02SLe0017H17.1  AC215447.2 htgs_phase:3 submitted_to_sgn_as:C02SLe0017H17 sequenced_by:kribb upload_account_name:korea">
        <position start="37252" stop="38489"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="37552" g_stop="37802" g_length="251"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="251" r_length="251" r_score="0.996"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="37803" i_stop="37874" i_length="72">
            <donor d_prob="1.000" d_score="0.98"/>
            <acceptor a_prob="0.973" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="37875" g_stop="38189" g_length="315"/>
          <reference_exon_boundary r_type="cDNA" r_start="252" r_stop="566" r_length="315" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLe0017H17.1" gen_strand="+" ref_id="SGN-E249713" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>566</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0017H17.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E249713" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="37552" e_stop="37802"/>
          <exon e_start="37875" e_stop="38189"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACACCGTTTACACCTCTGACAATATCATGGAACGGCATCTAACGGTGATTAAACCTAGCCGGAGCGACGAAGTTTTAGACGAAGATGAGCAGCTGCGAATCGCCAACCAGGTCAAAGCCTTGTTCGATGCTCAAGCACCTAAAAGACTCGCCAAACCAAATCGAAGCGAACCTGATTCAGTCATCCCCAATTCCCCTTTAGAAGATTTCCCTATTCCAGAACTTGACAATCTCCGATCTCTTCAATCACAGGTACTCTGCTAATTTTCCGTGCTGGTACATATTATTTTACTCTTTCTGATCACTCCTTTTGATTTTGATCAGGGTGGTAGCTTTTTTCCGGAAACTAATTGCTCGGAGCAAGACGAGTCCGTGGAAACTCAGTATTACAATGAGTTGGTTTCCATTGACAAACAGCATCACACGGTTCTCTACTCGTCTCTTTCGCACGAAACGATTTACTACTTTTGAATTTATGATTACCTTTATTTTCTGGGTTCAATTGAATCATATTCAATATAGTCTCGATCCAGGATACGGAGATTGTTTATGTTATTCACTATTTGTTGGCAGACTGGAAGTGGGTTCATAAAGGTGGTCAATCAAACGAATGGAAACATTTACGATCTTCAGTTGAAT</genome_strand>
        <mrna_strand>ACACCGTTTACACCTCTGACAATATCATGGAACGGCATCTAACGGTGATTAAACCTAGCCGGAGCGACGAAGTTTTAGACGAAGATGAGCAGCTGCGAATCGCCAACCAGGTCAAAGCCTTGTTCGATGCTCAAGCACCTAAAAGACTCGCCAAACCAAATCGAAGCGAACCTGATTCAGTCATCCCCAATTCCCCTTTAGAAGAATTCCCTATTCCAGAACTTGACAATCTCCGATCTCTTCAATCACAG........................................................................GGTGGTAGCTTTTTTCCGGAAACTAATTGCTCGGAGCAAGACGAGTCCGTGGAAACTCAGTATTACAATGAGTTGGTTTCCATTGACAAACAGCATCACACGGTTCTCTACTCGTCTCTTTCGCACGAAACGATTTACTACTTTTGAATTTATGATTACCTTTATTTTCTGGGTTCAATTGAATCATATTCAATATAGTCTCGATCCAGGATACGGAGATTGTTTATGTTATTCACTATTTGTTGGCAGACTGGAAGTGGGTTCATAAAGGTGGTCAATCAAACGAATGGAAACATTTACGATCTTCAGTTGAAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0017H17-A4Bcr/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E212378" ref_strand="+" ref_description="SGN-E212378 [cLEC-74-M2]">
      <seq>aatatcatggaacggcatctaacggtgattaaacctagccggagcgacgaagttttagacgaagatgagcagctgcgaatcgccaaccaggtcaaagccttgttcgatgctcaagcacctaaaagactcgccaaaccaaatcgaagcgaacctgattcagtcatccccaattcccctttagaagatttccctattccagaacttgacaatctccgatctcttcaatcacagggtggtagcttttttccggaaactaattgctcggagcaagacgagtccgtggaaactcagtattacaatgagttggtttccattgacaaacagcatcacacgactggaagtgggttcataaaggtggtcaatcaaacgaatggaaacatttacgatcttcagttgaatggtggttatgagaatggtagagccaaagagttcaaaactaatccggcgacaaacgactggattccgagtaaagatgattatcaggttggattcacctcctcaaaacccagccggagcgaaggtgattagatcgaaagtgaagaaagcaatcagct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0017H17-A4Bcr/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02SLe0017H17.1" temp_strand="+" temp_description="C02SLe0017H17.1  AC215447.2 htgs_phase:3 submitted_to_sgn_as:C02SLe0017H17 sequenced_by:kribb upload_account_name:korea">
        <position start="37272" stop="38730"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="37572" g_stop="37802" g_length="231"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="231" r_length="231" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="37803" i_stop="37874" i_length="72">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.973" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="37875" g_stop="37976" g_length="102"/>
          <reference_exon_boundary r_type="cDNA" r_start="232" r_stop="333" r_length="102" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="37977" i_stop="38123" i_length="147">
            <donor d_prob="0.689" d_score="1.00"/>
            <acceptor a_prob="0.957" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="38124" g_stop="38273" g_length="150"/>
          <reference_exon_boundary r_type="cDNA" r_start="334" r_stop="483" r_length="150" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="38274" i_stop="38359" i_length="86">
            <donor d_prob="0.839" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="38360" g_stop="38430" g_length="71"/>
          <reference_exon_boundary r_type="cDNA" r_start="484" r_stop="554" r_length="71" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLe0017H17.1" gen_strand="+" ref_id="SGN-E212378" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>554</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0017H17.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E212378" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="37572" e_stop="37802"/>
          <exon e_start="37875" e_stop="37976"/>
          <exon e_start="38124" e_stop="38273"/>
          <exon e_start="38360" e_stop="38430"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AATATCATGGAACGGCATCTAACGGTGATTAAACCTAGCCGGAGCGACGAAGTTTTAGACGAAGATGAGCAGCTGCGAATCGCCAACCAGGTCAAAGCCTTGTTCGATGCTCAAGCACCTAAAAGACTCGCCAAACCAAATCGAAGCGAACCTGATTCAGTCATCCCCAATTCCCCTTTAGAAGATTTCCCTATTCCAGAACTTGACAATCTCCGATCTCTTCAATCACAGGTACTCTGCTAATTTTCCGTGCTGGTACATATTATTTTACTCTTTCTGATCACTCCTTTTGATTTTGATCAGGGTGGTAGCTTTTTTCCGGAAACTAATTGCTCGGAGCAAGACGAGTCCGTGGAAACTCAGTATTACAATGAGTTGGTTTCCATTGACAAACAGCATCACACGGTTCTCTACTCGTCTCTTTCGCACGAAACGATTTACTACTTTTGAATTTATGATTACCTTTATTTTCTGGGTTCAATTGAATCATATTCAATATAGTCTCGATCCAGGATACGGAGATTGTTTATGTTATTCACTATTTGTTGGCAGACTGGAAGTGGGTTCATAAAGGTGGTCAATCAAACGAATGGAAACATTTACGATCTTCAGTTGAATGGTGGTTATGAGAATGGTAGAGCCAAAGAGTTCAAAACTAATCCGGCGACAAACGACTGGATTCCGAGTAAAGATGATTATCAGGTTTTTGATACATCGAGTTCATTGACTCTCCATGTGTTAAATTATACGAAATAAATTTGTGTTCAGTTTTCATATGTATTGATCAGGTTGGATTCACCTCCTCAAAACCCAGCCGGAGCGAAGGTGATTAGATCGAAAGTGAAGAAAGCAATCAGCT</genome_strand>
        <mrna_strand>AATATCATGGAACGGCATCTAACGGTGATTAAACCTAGCCGGAGCGACGAAGTTTTAGACGAAGATGAGCAGCTGCGAATCGCCAACCAGGTCAAAGCCTTGTTCGATGCTCAAGCACCTAAAAGACTCGCCAAACCAAATCGAAGCGAACCTGATTCAGTCATCCCCAATTCCCCTTTAGAAGATTTCCCTATTCCAGAACTTGACAATCTCCGATCTCTTCAATCACAG........................................................................GGTGGTAGCTTTTTTCCGGAAACTAATTGCTCGGAGCAAGACGAGTCCGTGGAAACTCAGTATTACAATGAGTTGGTTTCCATTGACAAACAGCATCACACG...................................................................................................................................................ACTGGAAGTGGGTTCATAAAGGTGGTCAATCAAACGAATGGAAACATTTACGATCTTCAGTTGAATGGTGGTTATGAGAATGGTAGAGCCAAAGAGTTCAAAACTAATCCGGCGACAAACGACTGGATTCCGAGTAAAGATGATTATCAG......................................................................................GTTGGATTCACCTCCTCAAAACCCAGCCGGAGCGAAGGTGATTAGATCGAAAGTGAAGAAAGCAATCAGCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0017H17-A4Bcr/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E268854" ref_strand="+" ref_description="SGN-E268854 [cLEM-4-L6]">
      <seq>atggaacggcatctaacggtgattaaacctagccggagcgacgaagttttagacgaagatgagcagctgcgaatcgccaaccaggtcaaagccttgttcgatgctcaagcacctaaaagactcgccaaaccaaatcgaagcgaacctgattcagtcatccccaattcccctttagaagatttccctattccagaacttgacaatctccgatctcttcaatcacagggtggtagcttttttccggaaactaattgctcggagcaagacgagtccgtggaaactcagtattacaatgagttggtttccattgacaaacagcatcacacgactggaagtgggttcataaaggtggtcaatcaaacgaatggaaacatttacgatcttcagttgaatggtggttatgagaatggtagagccaaagagttcaaaactaatccggcgacaaacgactggattccgagtaaagatgattatcaggttggattcacctcctcaaaacccagccggagcgaaggtgattagatcgaaagtgaagaaagcaatcagctggt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0017H17-A4Bcr/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02SLe0017H17.1" temp_strand="+" temp_description="C02SLe0017H17.1  AC215447.2 htgs_phase:3 submitted_to_sgn_as:C02SLe0017H17 sequenced_by:kribb upload_account_name:korea">
        <position start="37278" stop="38733"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="37578" g_stop="37802" g_length="225"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="225" r_length="225" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="37803" i_stop="37874" i_length="72">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.973" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="37875" g_stop="37976" g_length="102"/>
          <reference_exon_boundary r_type="cDNA" r_start="226" r_stop="327" r_length="102" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="37977" i_stop="38123" i_length="147">
            <donor d_prob="0.689" d_score="1.00"/>
            <acceptor a_prob="0.957" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="38124" g_stop="38273" g_length="150"/>
          <reference_exon_boundary r_type="cDNA" r_start="328" r_stop="477" r_length="150" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="38274" i_stop="38359" i_length="86">
            <donor d_prob="0.839" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="38360" g_stop="38433" g_length="74"/>
          <reference_exon_boundary r_type="cDNA" r_start="478" r_stop="551" r_length="74" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLe0017H17.1" gen_strand="+" ref_id="SGN-E268854" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>551</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0017H17.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E268854" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="37578" e_stop="37802"/>
          <exon e_start="37875" e_stop="37976"/>
          <exon e_start="38124" e_stop="38273"/>
          <exon e_start="38360" e_stop="38433"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATGGAACGGCATCTAACGGTGATTAAACCTAGCCGGAGCGACGAAGTTTTAGACGAAGATGAGCAGCTGCGAATCGCCAACCAGGTCAAAGCCTTGTTCGATGCTCAAGCACCTAAAAGACTCGCCAAACCAAATCGAAGCGAACCTGATTCAGTCATCCCCAATTCCCCTTTAGAAGATTTCCCTATTCCAGAACTTGACAATCTCCGATCTCTTCAATCACAGGTACTCTGCTAATTTTCCGTGCTGGTACATATTATTTTACTCTTTCTGATCACTCCTTTTGATTTTGATCAGGGTGGTAGCTTTTTTCCGGAAACTAATTGCTCGGAGCAAGACGAGTCCGTGGAAACTCAGTATTACAATGAGTTGGTTTCCATTGACAAACAGCATCACACGGTTCTCTACTCGTCTCTTTCGCACGAAACGATTTACTACTTTTGAATTTATGATTACCTTTATTTTCTGGGTTCAATTGAATCATATTCAATATAGTCTCGATCCAGGATACGGAGATTGTTTATGTTATTCACTATTTGTTGGCAGACTGGAAGTGGGTTCATAAAGGTGGTCAATCAAACGAATGGAAACATTTACGATCTTCAGTTGAATGGTGGTTATGAGAATGGTAGAGCCAAAGAGTTCAAAACTAATCCGGCGACAAACGACTGGATTCCGAGTAAAGATGATTATCAGGTTTTTGATACATCGAGTTCATTGACTCTCCATGTGTTAAATTATACGAAATAAATTTGTGTTCAGTTTTCATATGTATTGATCAGGTTGGATTCACCTCCTCAAAACCCAGCCGGAGCGAAGGTGATTAGATCGAAAGTGAAGAAAGCAATCAGCTGGT</genome_strand>
        <mrna_strand>ATGGAACGGCATCTAACGGTGATTAAACCTAGCCGGAGCGACGAAGTTTTAGACGAAGATGAGCAGCTGCGAATCGCCAACCAGGTCAAAGCCTTGTTCGATGCTCAAGCACCTAAAAGACTCGCCAAACCAAATCGAAGCGAACCTGATTCAGTCATCCCCAATTCCCCTTTAGAAGATTTCCCTATTCCAGAACTTGACAATCTCCGATCTCTTCAATCACAG........................................................................GGTGGTAGCTTTTTTCCGGAAACTAATTGCTCGGAGCAAGACGAGTCCGTGGAAACTCAGTATTACAATGAGTTGGTTTCCATTGACAAACAGCATCACACG...................................................................................................................................................ACTGGAAGTGGGTTCATAAAGGTGGTCAATCAAACGAATGGAAACATTTACGATCTTCAGTTGAATGGTGGTTATGAGAATGGTAGAGCCAAAGAGTTCAAAACTAATCCGGCGACAAACGACTGGATTCCGAGTAAAGATGATTATCAG......................................................................................GTTGGATTCACCTCCTCAAAACCCAGCCGGAGCGAAGGTGATTAGATCGAAAGTGAAGAAAGCAATCAGCTGGT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0017H17-A4Bcr/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E390346" ref_strand="+" ref_description="SGN-E390346 [TUS-17-C4](-)">
      <seq>atgctcaagcacctaaaagactcgccaaaccaaatcgaagcgaacctgattcagtcatccccaattcccctttagaagatttccctattccagaacttgacaatctccgatctcttcaatcacagggtggtagcttttttccggaaactaattgctcggagcaagacgagtccgtggaaactcagtattacaatgagttggtttccattgacaaacagcatcacacgactggaagtgggttcataaaggtggtcaatcaaacgaatggaaacatttacgatcttcagttgaatggtggttatgagaatggtagagccaaagagttcaaaactaatccggcgacaaacgactggattccgagtaaagatgattatcaggttggattcacctcctcaaaacccagccggagcgaaggtgattagatcgaaagtgaagaaagcaatcagctggtgaaggtggtttgttctgttctcttgaattcgtttgtttatcttgactgattgagagagaaaaatgagggatgctaggatttcaagacagtaagtagttgagtgttgtcgtatttttagtcgtatgatttaggtattgcctagtttctttttctccaatgtgtaagaaacgcccagatttgcttttcttaccagagctactgtatctgccctaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0017H17-A4Bcr/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02SLe0017H17.1" temp_strand="+" temp_description="C02SLe0017H17.1  AC215447.2 htgs_phase:3 submitted_to_sgn_as:C02SLe0017H17 sequenced_by:kribb upload_account_name:korea">
        <position start="37378" stop="38945"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="37678" g_stop="37802" g_length="125"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="125" r_length="125" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="37803" i_stop="37874" i_length="72">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.973" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="37875" g_stop="37976" g_length="102"/>
          <reference_exon_boundary r_type="cDNA" r_start="126" r_stop="227" r_length="102" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="37977" i_stop="38123" i_length="147">
            <donor d_prob="0.689" d_score="1.00"/>
            <acceptor a_prob="0.957" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="38124" g_stop="38273" g_length="150"/>
          <reference_exon_boundary r_type="cDNA" r_start="228" r_stop="377" r_length="150" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="38274" i_stop="38359" i_length="86">
            <donor d_prob="0.839" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="38360" g_stop="38644" g_length="285"/>
          <reference_exon_boundary r_type="cDNA" r_start="378" r_stop="662" r_length="285" r_score="0.989"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="663" polyA_stop="673"/>
      <MATCH_line gen_id="C02SLe0017H17.1" gen_strand="+" ref_id="SGN-E390346" ref_strand="+">
        <total_alignment_score>0.995</total_alignment_score>
        <cumulative_length_of_scored_exons>662</cumulative_length_of_scored_exons>
        <coverage percentage="0.984" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0017H17.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E390346" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="37678" e_stop="37802"/>
          <exon e_start="37875" e_stop="37976"/>
          <exon e_start="38124" e_stop="38273"/>
          <exon e_start="38360" e_stop="38644"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATGCTCAAGCACCTAAAAGACTCGCCAAACCAAATCGAAGCGAACCTGATTCAGTCATCCCCAATTCCCCTTTAGAAGATTTCCCTATTCCAGAACTTGACAATCTCCGATCTCTTCAATCACAGGTACTCTGCTAATTTTCCGTGCTGGTACATATTATTTTACTCTTTCTGATCACTCCTTTTGATTTTGATCAGGGTGGTAGCTTTTTTCCGGAAACTAATTGCTCGGAGCAAGACGAGTCCGTGGAAACTCAGTATTACAATGAGTTGGTTTCCATTGACAAACAGCATCACACGGTTCTCTACTCGTCTCTTTCGCACGAAACGATTTACTACTTTTGAATTTATGATTACCTTTATTTTCTGGGTTCAATTGAATCATATTCAATATAGTCTCGATCCAGGATACGGAGATTGTTTATGTTATTCACTATTTGTTGGCAGACTGGAAGTGGGTTCATAAAGGTGGTCAATCAAACGAATGGAAACATTTACGATCTTCAGTTGAATGGTGGTTATGAGAATGGTAGAGCCAAAGAGTTCAAAACTAATCCGGCGACAAACGACTGGATTCCGAGTAAAGATGATTATCAGGTTTTTGATACATCGAGTTCATTGACTCTCCATGTGTTAAATTATACGAAATAAATTTGTGTTCAGTTTTCATATGTATTGATCAGGTTGGATTCACCTCCTCAAAACCCAGCCGGAGCGAAGGTGATTAGATCGAAAGTGAAGAAAGCAATCAGCTGGTGAAGGTGGTTTGTTCTGTTCTCTTGAATTCGTTTGTTTATCTTGACTGATTGAGAGAGAAAAATGAGGGATGCTAGGATTTCAAGACAGTAAGTAGTTGAGTGTTGTCGTATTTTTAGTCGTATGATTTAGGTATTGCCTAGTTTCTTTTTCTCCAATGTGTATTAAACGCCCAGATTTGCTTTTCTTACCAGAGCTACTGTTTCTGCCCT</genome_strand>
        <mrna_strand>ATGCTCAAGCACCTAAAAGACTCGCCAAACCAAATCGAAGCGAACCTGATTCAGTCATCCCCAATTCCCCTTTAGAAGATTTCCCTATTCCAGAACTTGACAATCTCCGATCTCTTCAATCACAG........................................................................GGTGGTAGCTTTTTTCCGGAAACTAATTGCTCGGAGCAAGACGAGTCCGTGGAAACTCAGTATTACAATGAGTTGGTTTCCATTGACAAACAGCATCACACG...................................................................................................................................................ACTGGAAGTGGGTTCATAAAGGTGGTCAATCAAACGAATGGAAACATTTACGATCTTCAGTTGAATGGTGGTTATGAGAATGGTAGAGCCAAAGAGTTCAAAACTAATCCGGCGACAAACGACTGGATTCCGAGTAAAGATGATTATCAG......................................................................................GTTGGATTCACCTCCTCAAAACCCAGCCGGAGCGAAGGTGATTAGATCGAAAGTGAAGAAAGCAATCAGCTGGTGAAGGTGGTTTGTTCTGTTCTCTTGAATTCGTTTGTTTATCTTGACTGATTGAGAGAGAAAAATGAGGGATGCTAGGATTTCAAGACAGTAAGTAGTTGAGTGTTGTCGTATTTTTAGTCGTATGATTTAGGTATTGCCTAGTTTCTTTTTCTCCAATGTGTAAGAAACGCCCAGATTTGCTTTTCTTACCAGAGCTACTGTATCTGCCCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0017H17-A4Bcr/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E218450" ref_strand="+" ref_description="SGN-E218450 [cLEL-18-F14](-)">
      <seq>agttaagaaagcaatcagctggtgaaggtggtttgttctgttctcttgaattcgtttgtttatcttgactgattgaaagagaaaaatgagggatgctaggatttcaagacagtaagtagttgagtgttgtcgtatttttagtcgtatgatttaggtattgcctagtttctttttctccaatgtgtattaaacgcccagatttgcttttcttaccagaaacccaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0017H17-A4Bcr/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02SLe0017H17.1" temp_strand="+" temp_description="C02SLe0017H17.1  AC215447.2 htgs_phase:3 submitted_to_sgn_as:C02SLe0017H17 sequenced_by:kribb upload_account_name:korea">
        <position start="38111" stop="38927"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="38411" g_stop="38627" g_length="217"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="217" r_length="217" r_score="0.991"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="223" polyA_stop="239"/>
      <MATCH_line gen_id="C02SLe0017H17.1" gen_strand="+" ref_id="SGN-E218450" ref_strand="+">
        <total_alignment_score>0.991</total_alignment_score>
        <cumulative_length_of_scored_exons>217</cumulative_length_of_scored_exons>
        <coverage percentage="0.908" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0017H17.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E218450" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="38411" e_stop="38627"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGTGAAGAAAGCAATCAGCTGGTGAAGGTGGTTTGTTCTGTTCTCTTGAATTCGTTTGTTTATCTTGACTGATTGAGAGAGAAAAATGAGGGATGCTAGGATTTCAAGACAGTAAGTAGTTGAGTGTTGTCGTATTTTTAGTCGTATGATTTAGGTATTGCCTAGTTTCTTTTTCTCCAATGTGTATTAAACGCCCAGATTTGCTTTTCTTACCAGA</genome_strand>
        <mrna_strand>AGTTAAGAAAGCAATCAGCTGGTGAAGGTGGTTTGTTCTGTTCTCTTGAATTCGTTTGTTTATCTTGACTGATTGAAAGAGAAAAATGAGGGATGCTAGGATTTCAAGACAGTAAGTAGTTGAGTGTTGTCGTATTTTTAGTCGTATGATTTAGGTATTGCCTAGTTTCTTTTTCTCCAATGTGTATTAAACGCCCAGATTTGCTTTTCTTACCAGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0017H17-A4Bcr/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E546515" ref_strand="+" ref_description="SGN-E546515 [TUS-69-O18](-)">
      <seq>gatcagatcatcaaagggatttttttgtcatgctgaatgcggggactgaaacatcatctgtgacaatagaatgggcgatgtctcttctactgaaccatccagaggtgttggagaaggccagaaatgaaatagacaaccatgtgggtaaggatcgtttgatggatgaagcggatttacccaagctgaaataccttcaaagtattatctccgagacactacgattgttcccagcagcaccattgctagtgcctcatgagtcatctgatgattgcaaggtcgctggcttccacattccacgaggcacgatgctactggtgaatgcttggtccatccacagggatcctttactttgggaggatccagagagcttcaagccagaaaggttttatggtgtggaagtggaatcatggaagctattgccttttggaatgggaaggagagcttgccctggctccggacttgctcaacgtgtggttggtttaactttaggaactttagtgcagtgttttgaatggaaaagggtaagcgatgagaaggtcgatttgacagaaggaaaaggtgtcactatgccaaaagctgagccactcatggctagatgcaaagctcgtgaaattgttcgcaaagttctttcggaaacatcctaatgtttttcttgcatgttgttggtttagaaaggtttgaataagtcatttatcatgtatcttcattgtgtcacatactatgcaatatctgagtttctgatttatcattcagatactttggtataatataaatatgaggtgctatggatttaatggattcaattgaaatcatcaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0017H17-A4Bcr/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02SLe0017H17.1" temp_strand="-" temp_description="C02SLe0017H17.1  AC215447.2 htgs_phase:3 submitted_to_sgn_as:C02SLe0017H17 sequenced_by:kribb upload_account_name:korea">
        <position start="46506" stop="44983"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="46206" g_stop="46180" g_length="27"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="26" r_length="26" r_score="0.889"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="46179" i_stop="46080" i_length="100">
            <donor d_prob="0.807" d_score="0.00"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="46079" g_stop="45278" g_length="802"/>
          <reference_exon_boundary r_type="cDNA" r_start="27" r_stop="828" r_length="802" r_score="0.976"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLe0017H17.1" gen_strand="-" ref_id="SGN-E546515" ref_strand="+">
        <total_alignment_score>0.976</total_alignment_score>
        <cumulative_length_of_scored_exons>829</cumulative_length_of_scored_exons>
        <coverage percentage="1.001" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0017H17.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E546515" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="46206" e_stop="46180"/>
          <exon e_start="46079" e_stop="45278"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GACCAGATCATCAAAGGGATTGTTTTGGTAAGCTTAGTAGGCCTTTGACCATAGGATTTGGGACCCTAACTTCAAGTTTAATTTCACGAAATTTCAACTTGTCTTATTCATTAACCATCAACTGCAGGTCATGCTGAATGCGGGGACTGAAACATCATCTGTGACAATAGAATGGGCGATGTCTCTTCTACTGAACCATCCAGAGGTGTTGGAGAAGGCCAGAAATGAAATAGACAACCATGTGGGTAAGGATCGTTTGATGGATGAAGCGGATTTACCCAAGCTGAAATACCTTCAAAGTATTATCTCCGAGACACTACGATTGTTCCCAGCAGCACCATTGCTAGTGCCTCATGAGTCATCTGAGGATTGCAAGGTCGCTGGCTTCCACATTCCACGAGGCACGATGCTACTGGTGAATGCTTGGTCCATCCACAGGGATCCTTTACTTTGGGAGGATCCAGAGAGCTTCAAGCCAGAAAGGTTTTATGGTGTGGAAGTGGAATCATGGAAGTTATTGCCTTTTGGAATGGGAAGGAGAGCTTGCCCTGGCTCCGGACTTGCTCAACGTGTGGTTGGTTTAGCTTTAGGAACTTTAGTGCAGTGTTTTGAATGGAAAAGGGTAAGCGATGAGAAGGTCGATTTGACAGAAGGAAAAGGTCTCACTATGCCAAAAGCTGAGCCACTCATGGCTAGATGCAAAGCTCGTGAAATTGTTCACAAAGTTCTTTCGGAAACATCCTAATGTTTTTCTTGCATGTTGTTAGTTTAGAAAGGTTTGAATAAGTCATGTATCATGTATCTTCATTGTGTCATATACTATGCAATATCTGAGTTTCTGATTTATCATTCAGATACTTTGGTATAATATACATACGAGGTGCTACGGATTTAATGGATTCAATTGAAATCATCTCAAATATATGCAT</genome_strand>
        <mrna_strand>GATCAGATCATCAAAGGGATT-TTTTT....................................................................................................GTCATGCTGAATGCGGGGACTGAAACATCATCTGTGACAATAGAATGGGCGATGTCTCTTCTACTGAACCATCCAGAGGTGTTGGAGAAGGCCAGAAATGAAATAGACAACCATGTGGGTAAGGATCGTTTGATGGATGAAGCGGATTTACCCAAGCTGAAATACCTTCAAAGTATTATCTCCGAGACACTACGATTGTTCCCAGCAGCACCATTGCTAGTGCCTCATGAGTCATCTGATGATTGCAAGGTCGCTGGCTTCCACATTCCACGAGGCACGATGCTACTGGTGAATGCTTGGTCCATCCACAGGGATCCTTTACTTTGGGAGGATCCAGAGAGCTTCAAGCCAGAAAGGTTTTATGGTGTGGAAGTGGAATCATGGAAGCTATTGCCTTTTGGAATGGGAAGGAGAGCTTGCCCTGGCTCCGGACTTGCTCAACGTGTGGTTGGTTTAACTTTAGGAACTTTAGTGCAGTGTTTTGAATGGAAAAGGGTAAGCGATGAGAAGGTCGATTTGACAGAAGGAAAAGGTGTCACTATGCCAAAAGCTGAGCCACTCATGGCTAGATGCAAAGCTCGTGAAATTGTTCGCAAAGTTCTTTCGGAAACATCCTAATGTTTTTCTTGCATGTTGTTGGTTTAGAAAGGTTTGAATAAGTCATTTATCATGTATCTTCATTGTGTCACATACTATGCAATATCTGAGTTTCTGATTTATCATTCAGATACTTTGGTATAATATAAATATGAGGTGCTATGGATTTAATGGATTCAATTGAAATCATCAAAAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0017H17-A4Bcr/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E546522" ref_strand="+" ref_description="SGN-E546522 [TUS-69-O22](-)">
      <seq>ttgatggatgaagcggatttacccaagctgaaatactttcaaagtattatctccgagacattaggattgttcccagcagctccattgctagtccctcatgagtcatctgatgattgcaaggtcgctggcttccacattccacgaggcacgatgctactggtgaatgcttggtccatccacagggatcctttactttgggaggatccagagagcttcaagccagaaaggttttatggtgtggaagtggaatcatggaagctattgccttttggaatgggaaggagagcttgccctggctccggacttgctcaacgtgtggttggttacactttaggaactttagtgcagtgttttgaatggaaaagggtaagcgatgataaggtcgatttgacagaaggaaaaggtgtcactatgccaaaagctgagccactcatggctagatgcaaagctcgtgaaattgttcgcaaagttctttcggaaacatcctaatgtttttcttgcatgttgttggtttagaaaggtttgaataagtcatttatcatgtatcttcattgtgtcacatactatgcaatatctgagtttctgatttatcattcagatactttggtataatataaatatgaggtgctatggatttaatggattcaattgaaatcatccccattttagaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0017H17-A4Bcr/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02SLe0017H17.1" temp_strand="-" temp_description="C02SLe0017H17.1  AC215447.2 htgs_phase:3 submitted_to_sgn_as:C02SLe0017H17 sequenced_by:kribb upload_account_name:korea">
        <position start="46250" stop="44979"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="45950" g_stop="45279" g_length="672"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="672" r_length="672" r_score="0.961"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLe0017H17.1" gen_strand="-" ref_id="SGN-E546522" ref_strand="+">
        <total_alignment_score>0.961</total_alignment_score>
        <cumulative_length_of_scored_exons>672</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0017H17.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E546522" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="45950" e_stop="45279"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTGATGGATGAAGCGGATTTACCCAAGCTGAAATACCTTCAAAGTATTATCTCCGAGACACTACGATTGTTCCCAGCAGCACCATTGCTAGTGCCTCATGAGTCATCTGAGGATTGCAAGGTCGCTGGCTTCCACATTCCACGAGGCACGATGCTACTGGTGAATGCTTGGTCCATCCACAGGGATCCTTTACTTTGGGAGGATCCAGAGAGCTTCAAGCCAGAAAGGTTTTATGGTGTGGAAGTGGAATCATGGAAGTTATTGCCTTTTGGAATGGGAAGGAGAGCTTGCCCTGGCTCCGGACTTGCTCAACGTGTGGTTGGTTTAGCTTTAGGAACTTTAGTGCAGTGTTTTGAATGGAAAAGGGTAAGCGATGAGAAGGTCGATTTGACAGAAGGAAAAGGTCTCACTATGCCAAAAGCTGAGCCACTCATGGCTAGATGCAAAGCTCGTGAAATTGTTCACAAAGTTCTTTCGGAAACATCCTAATGTTTTTCTTGCATGTTGTTAGTTTAGAAAGGTTTGAATAAGTCATGTATCATGTATCTTCATTGTGTCATATACTATGCAATATCTGAGTTTCTGATTTATCATTCAGATACTTTGGTATAATATACATACGAGGTGCTACGGATTTAATGGATTCAATTGAAATCATCTCAAATATATGCA</genome_strand>
        <mrna_strand>TTGATGGATGAAGCGGATTTACCCAAGCTGAAATACTTTCAAAGTATTATCTCCGAGACATTAGGATTGTTCCCAGCAGCTCCATTGCTAGTCCCTCATGAGTCATCTGATGATTGCAAGGTCGCTGGCTTCCACATTCCACGAGGCACGATGCTACTGGTGAATGCTTGGTCCATCCACAGGGATCCTTTACTTTGGGAGGATCCAGAGAGCTTCAAGCCAGAAAGGTTTTATGGTGTGGAAGTGGAATCATGGAAGCTATTGCCTTTTGGAATGGGAAGGAGAGCTTGCCCTGGCTCCGGACTTGCTCAACGTGTGGTTGGTTACACTTTAGGAACTTTAGTGCAGTGTTTTGAATGGAAAAGGGTAAGCGATGATAAGGTCGATTTGACAGAAGGAAAAGGTGTCACTATGCCAAAAGCTGAGCCACTCATGGCTAGATGCAAAGCTCGTGAAATTGTTCGCAAAGTTCTTTCGGAAACATCCTAATGTTTTTCTTGCATGTTGTTGGTTTAGAAAGGTTTGAATAAGTCATTTATCATGTATCTTCATTGTGTCACATACTATGCAATATCTGAGTTTCTGATTTATCATTCAGATACTTTGGTATAATATAAATATGAGGTGCTATGGATTTAATGGATTCAATTGAAATCATCCCCATTTTAGAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0017H17-A4Bcr/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E353986" ref_strand="+" ref_description="SGN-E353986 [cLHT-6-I19](-)">
      <seq>tgctactggtgaatgcttggtccatccacagggatcctttactttgggaggatccagagagcttcaagccagaaaggttttatggtgtggaagtggaatcatggaagctattgccttttggaatgggaaggagagcttgccctggctccggacttgctcaacgtgtggttggtttaactttaggaactttagtgcagtgttttgaatggaaaagggtaagcgatgagaaggtcgatttgacagaaggaaaaggtgtcactatgccaaaagctgagccactcatggctagatgcaaagctcgtgaaattgttcgcaaagttctttcggaaacatcctaatgtttttcttgcatgttgttggtttagaaaggtttgaataagtcatttatcatgtatcttcattgtgtcacatactatgcaatatctgagtttctgatttatcattcagatactttggtataatataaatatgaggtgctatggatttaatggattcaattgaaatcatctcaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0017H17-A4Bcr/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02SLe0017H17.1" temp_strand="-" temp_description="C02SLe0017H17.1  AC215447.2 htgs_phase:3 submitted_to_sgn_as:C02SLe0017H17 sequenced_by:kribb upload_account_name:korea">
        <position start="46099" stop="44983"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="45799" g_stop="45281" g_length="519"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="519" r_length="519" r_score="0.973"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLe0017H17.1" gen_strand="-" ref_id="SGN-E353986" ref_strand="+">
        <total_alignment_score>0.973</total_alignment_score>
        <cumulative_length_of_scored_exons>519</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0017H17.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E353986" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="45799" e_stop="45281"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGCTACTGGTGAATGCTTGGTCCATCCACAGGGATCCTTTACTTTGGGAGGATCCAGAGAGCTTCAAGCCAGAAAGGTTTTATGGTGTGGAAGTGGAATCATGGAAGTTATTGCCTTTTGGAATGGGAAGGAGAGCTTGCCCTGGCTCCGGACTTGCTCAACGTGTGGTTGGTTTAGCTTTAGGAACTTTAGTGCAGTGTTTTGAATGGAAAAGGGTAAGCGATGAGAAGGTCGATTTGACAGAAGGAAAAGGTCTCACTATGCCAAAAGCTGAGCCACTCATGGCTAGATGCAAAGCTCGTGAAATTGTTCACAAAGTTCTTTCGGAAACATCCTAATGTTTTTCTTGCATGTTGTTAGTTTAGAAAGGTTTGAATAAGTCATGTATCATGTATCTTCATTGTGTCATATACTATGCAATATCTGAGTTTCTGATTTATCATTCAGATACTTTGGTATAATATACATACGAGGTGCTACGGATTTAATGGATTCAATTGAAATCATCTCAAATATATG</genome_strand>
        <mrna_strand>TGCTACTGGTGAATGCTTGGTCCATCCACAGGGATCCTTTACTTTGGGAGGATCCAGAGAGCTTCAAGCCAGAAAGGTTTTATGGTGTGGAAGTGGAATCATGGAAGCTATTGCCTTTTGGAATGGGAAGGAGAGCTTGCCCTGGCTCCGGACTTGCTCAACGTGTGGTTGGTTTAACTTTAGGAACTTTAGTGCAGTGTTTTGAATGGAAAAGGGTAAGCGATGAGAAGGTCGATTTGACAGAAGGAAAAGGTGTCACTATGCCAAAAGCTGAGCCACTCATGGCTAGATGCAAAGCTCGTGAAATTGTTCGCAAAGTTCTTTCGGAAACATCCTAATGTTTTTCTTGCATGTTGTTGGTTTAGAAAGGTTTGAATAAGTCATTTATCATGTATCTTCATTGTGTCACATACTATGCAATATCTGAGTTTCTGATTTATCATTCAGATACTTTGGTATAATATAAATATGAGGTGCTATGGATTTAATGGATTCAATTGAAATCATCTCAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0017H17-A4Bcr/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E549352" ref_strand="+" ref_description="SGN-E549352 [TUS-69-K1](-)">
      <seq>ttttgtcatgctgaatgcggggactgaaacatcatctgtgacaatagaatgggcgatgtctcttctactgaaccatccagaggtgtggagaaggccagaaatgaaatagacaaccatgtgggtaaggatcgtttgatggatgaagcggatttacccaagctgaaataccttcaaagtattatctccgagacactacgattgttcccagcagcaccattgctagtgcctcatgagtcatctgatgattgcaaggtcgctggcttccacattccacgaggcacgatgctactggtgaatgcttggtccatccacagggatcctttactttgggaggatccagagagcttcaagccagaaaggttttatggtgtggaagtggaatcatggaagctattgccttttggaatgggaaggagagcttgccctggctccggacttgctcaacgtgtggttggtttaactttaggaactttagtgcagtgttttgaatggaaaagggtaagcgatgagaaggtcgatttgacagaaggaaaaggtgtcactatgccaaaagctgagccactcatggctagatgcaaagctcgtgaaattgttcgcaaagttctttcggaaacatcctaatgtttttcttgcatgttgttggtttagaaaggtttgaataagtcatttatcatgtatcttcattgtgtcacatactatgcaatatctgagtttctgatttatcattcagatactttggtataatataaatatgaggtgctatggatttaatggattcaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0017H17-A4Bcr/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02SLe0017H17.1" temp_strand="-" temp_description="C02SLe0017H17.1  AC215447.2 htgs_phase:3 submitted_to_sgn_as:C02SLe0017H17 sequenced_by:kribb upload_account_name:korea">
        <position start="46379" stop="45003"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="46183" g_stop="46180" g_length="4"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="4" r_length="4" r_score="0.750"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="46179" i_stop="46080" i_length="100">
            <donor d_prob="0.807" d_score="0.00"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="46079" g_stop="45293" g_length="787"/>
          <reference_exon_boundary r_type="cDNA" r_start="5" r_stop="790" r_length="786" r_score="0.977"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLe0017H17.1" gen_strand="-" ref_id="SGN-E549352" ref_strand="+">
        <total_alignment_score>0.977</total_alignment_score>
        <cumulative_length_of_scored_exons>791</cumulative_length_of_scored_exons>
        <coverage percentage="1.001" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0017H17.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E549352" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="46183" e_stop="46180"/>
          <exon e_start="46079" e_stop="45293"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTGGTAAGCTTAGTAGGCCTTTGACCATAGGATTTGGGACCCTAACTTCAAGTTTAATTTCACGAAATTTCAACTTGTCTTATTCATTAACCATCAACTGCAGGTCATGCTGAATGCGGGGACTGAAACATCATCTGTGACAATAGAATGGGCGATGTCTCTTCTACTGAACCATCCAGAGGTGTTGGAGAAGGCCAGAAATGAAATAGACAACCATGTGGGTAAGGATCGTTTGATGGATGAAGCGGATTTACCCAAGCTGAAATACCTTCAAAGTATTATCTCCGAGACACTACGATTGTTCCCAGCAGCACCATTGCTAGTGCCTCATGAGTCATCTGAGGATTGCAAGGTCGCTGGCTTCCACATTCCACGAGGCACGATGCTACTGGTGAATGCTTGGTCCATCCACAGGGATCCTTTACTTTGGGAGGATCCAGAGAGCTTCAAGCCAGAAAGGTTTTATGGTGTGGAAGTGGAATCATGGAAGTTATTGCCTTTTGGAATGGGAAGGAGAGCTTGCCCTGGCTCCGGACTTGCTCAACGTGTGGTTGGTTTAGCTTTAGGAACTTTAGTGCAGTGTTTTGAATGGAAAAGGGTAAGCGATGAGAAGGTCGATTTGACAGAAGGAAAAGGTCTCACTATGCCAAAAGCTGAGCCACTCATGGCTAGATGCAAAGCTCGTGAAATTGTTCACAAAGTTCTTTCGGAAACATCCTAATGTTTTTCTTGCATGTTGTTAGTTTAGAAAGGTTTGAATAAGTCATGTATCATGTATCTTCATTGTGTCATATACTATGCAATATCTGAGTTTCTGATTTATCATTCAGATACTTTGGTATAATATACATACGAGGTGCTACGGATTTAATGGATTCAATTGAAATCAT</genome_strand>
        <mrna_strand>TTTT....................................................................................................GTCATGCTGAATGCGGGGACTGAAACATCATCTGTGACAATAGAATGGGCGATGTCTCTTCTACTGAACCATCCAGAGGTG-TGGAGAAGGCCAGAAATGAAATAGACAACCATGTGGGTAAGGATCGTTTGATGGATGAAGCGGATTTACCCAAGCTGAAATACCTTCAAAGTATTATCTCCGAGACACTACGATTGTTCCCAGCAGCACCATTGCTAGTGCCTCATGAGTCATCTGATGATTGCAAGGTCGCTGGCTTCCACATTCCACGAGGCACGATGCTACTGGTGAATGCTTGGTCCATCCACAGGGATCCTTTACTTTGGGAGGATCCAGAGAGCTTCAAGCCAGAAAGGTTTTATGGTGTGGAAGTGGAATCATGGAAGCTATTGCCTTTTGGAATGGGAAGGAGAGCTTGCCCTGGCTCCGGACTTGCTCAACGTGTGGTTGGTTTAACTTTAGGAACTTTAGTGCAGTGTTTTGAATGGAAAAGGGTAAGCGATGAGAAGGTCGATTTGACAGAAGGAAAAGGTGTCACTATGCCAAAAGCTGAGCCACTCATGGCTAGATGCAAAGCTCGTGAAATTGTTCGCAAAGTTCTTTCGGAAACATCCTAATGTTTTTCTTGCATGTTGTTGGTTTAGAAAGGTTTGAATAAGTCATTTATCATGTATCTTCATTGTGTCACATACTATGCAATATCTGAGTTTCTGATTTATCATTCAGATACTTTGGTATAATATAAATATGAGGTGCTATGGATTTAATGGATTCAAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0017H17-A4Bcr/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E379429" ref_strand="+" ref_description="SGN-E379429 [TUS-3-M2](-)">
      <seq>catgctgaatgcggggactgaaacatcatctgtgacaatagaatgggcgatgtctcttctactgaaccatccagaggtgttggagaaggccagaaatgaaatagacaaccatgtgggtaaggatcgtttgatggatgaagcggatttacccaagctgaaataccttcaaagtattatctccgagacactacgattgttcccagcagcaccattgctagtgcctcatgagtcatctgaggattgcaaggtcgctggcttccacattccacgaggcacgatgctactggtgaatgcttggtccatccacagggatcctttactttgggaggatccagagagcttcaagccagaaaggttttatggtgtggaagtggaatcatggaagttattgccttttggaatgggaaggagagcttgccctggctccggacttgctcaacgtgtggttggtttagctttaggaactttagtgcagtgttttgaatggaaaagggtaagcgatgagaaggtcgatttgacagaaggaaaaggtctcactatgccaaaagctgagccactcatggctagatgcaaagctcgtgaaattgttcacaaagttctttcggaaacatcctaatgtttttcttgcatgttgttagtttagaaaggtttgaataagtcatgtgacatgtatcttcattg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0017H17-A4Bcr/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02SLe0017H17.1" temp_strand="-" temp_description="C02SLe0017H17.1  AC215447.2 htgs_phase:3 submitted_to_sgn_as:C02SLe0017H17 sequenced_by:kribb upload_account_name:korea">
        <position start="46377" stop="45097"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="46077" g_stop="45397" g_length="681"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="681" r_length="681" r_score="0.997"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLe0017H17.1" gen_strand="-" ref_id="SGN-E379429" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>681</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0017H17.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E379429" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="46077" e_stop="45397"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CATGCTGAATGCGGGGACTGAAACATCATCTGTGACAATAGAATGGGCGATGTCTCTTCTACTGAACCATCCAGAGGTGTTGGAGAAGGCCAGAAATGAAATAGACAACCATGTGGGTAAGGATCGTTTGATGGATGAAGCGGATTTACCCAAGCTGAAATACCTTCAAAGTATTATCTCCGAGACACTACGATTGTTCCCAGCAGCACCATTGCTAGTGCCTCATGAGTCATCTGAGGATTGCAAGGTCGCTGGCTTCCACATTCCACGAGGCACGATGCTACTGGTGAATGCTTGGTCCATCCACAGGGATCCTTTACTTTGGGAGGATCCAGAGAGCTTCAAGCCAGAAAGGTTTTATGGTGTGGAAGTGGAATCATGGAAGTTATTGCCTTTTGGAATGGGAAGGAGAGCTTGCCCTGGCTCCGGACTTGCTCAACGTGTGGTTGGTTTAGCTTTAGGAACTTTAGTGCAGTGTTTTGAATGGAAAAGGGTAAGCGATGAGAAGGTCGATTTGACAGAAGGAAAAGGTCTCACTATGCCAAAAGCTGAGCCACTCATGGCTAGATGCAAAGCTCGTGAAATTGTTCACAAAGTTCTTTCGGAAACATCCTAATGTTTTTCTTGCATGTTGTTAGTTTAGAAAGGTTTGAATAAGTCATGTATCATGTATCTTCATTG</genome_strand>
        <mrna_strand>CATGCTGAATGCGGGGACTGAAACATCATCTGTGACAATAGAATGGGCGATGTCTCTTCTACTGAACCATCCAGAGGTGTTGGAGAAGGCCAGAAATGAAATAGACAACCATGTGGGTAAGGATCGTTTGATGGATGAAGCGGATTTACCCAAGCTGAAATACCTTCAAAGTATTATCTCCGAGACACTACGATTGTTCCCAGCAGCACCATTGCTAGTGCCTCATGAGTCATCTGAGGATTGCAAGGTCGCTGGCTTCCACATTCCACGAGGCACGATGCTACTGGTGAATGCTTGGTCCATCCACAGGGATCCTTTACTTTGGGAGGATCCAGAGAGCTTCAAGCCAGAAAGGTTTTATGGTGTGGAAGTGGAATCATGGAAGTTATTGCCTTTTGGAATGGGAAGGAGAGCTTGCCCTGGCTCCGGACTTGCTCAACGTGTGGTTGGTTTAGCTTTAGGAACTTTAGTGCAGTGTTTTGAATGGAAAAGGGTAAGCGATGAGAAGGTCGATTTGACAGAAGGAAAAGGTCTCACTATGCCAAAAGCTGAGCCACTCATGGCTAGATGCAAAGCTCGTGAAATTGTTCACAAAGTTCTTTCGGAAACATCCTAATGTTTTTCTTGCATGTTGTTAGTTTAGAAAGGTTTGAATAAGTCATGTGACATGTATCTTCATTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0017H17-A4Bcr/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E379796" ref_strand="+" ref_description="SGN-E379796 [TUS-3-M2]">
      <seq>gaggaggcaaatcattttcgggtgcttgtagaagaggttatttcgtttggcggtgtatcaaatgccgcggatttcatgcctgcaatatttctgttgtttttcaggagtacggagaaaaaaatagcaaagcttggtaataagatggacaagctcttgcaaggtttggttgatgaacatcgccgcgataaaagcaggaatactatgattgatcatttgctttctttgcaagaatcagaaccagagtattacactgaccagatcatcaaagggattgttttggtcatgctgaatgcggggactgaaacatcatctgtgacaatagaatgggcgatgtctcttctactgaaccatccagaggtgttggagaaggccagaaatgaaatagacaaccatgtgggtaaggatcgtttgatggatgaagcggatttacccaagctgaaataccttcaaagtattatctccgagacactacgattgttcccagcagcaccattgctagtgcctcatgagtcatctgaggattgcaaggtcgctggcttccacattccacgaggcacgatgctactggtgaatgcttggtccatccacagggatcctttactttgggaggatccagagagcttcaagccagaaaggttttatggtgtggaagtggaatcatggaaagtattgccttttggaatgggaaagagagcttgccctggctccggacttgctc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0017H17-A4Bcr/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02SLe0017H17.1" temp_strand="-" temp_description="C02SLe0017H17.1  AC215447.2 htgs_phase:3 submitted_to_sgn_as:C02SLe0017H17 sequenced_by:kribb upload_account_name:korea">
        <position start="46758" stop="45341"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="46458" g_stop="46180" g_length="279"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="279" r_length="279" r_score="0.996"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="46179" i_stop="46080" i_length="100">
            <donor d_prob="0.807" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="46079" g_stop="45641" g_length="439"/>
          <reference_exon_boundary r_type="cDNA" r_start="280" r_stop="718" r_length="439" r_score="0.993"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLe0017H17.1" gen_strand="-" ref_id="SGN-E379796" ref_strand="+">
        <total_alignment_score>0.994</total_alignment_score>
        <cumulative_length_of_scored_exons>718</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0017H17.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E379796" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="46458" e_stop="46180"/>
          <exon e_start="46079" e_stop="45641"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAGGAGGCAAATCATTTTCGGGTGCTTGTAGAAGAGGTTATTTCGTTTGGGGGTGTATCAAATGCCGCGGATTTCATGCCTGCAATATTTCTGTTGTTTTTCAGGAGTACGGAGAAAAAAATAGCAAAGCTTGGTAATAAGATGGACAAGCTCTTGCAAGGTTTGGTTGATGAACATCGCCGCGATAAAAGCAGGAATACTATGATTGATCATTTGCTTTCTTTGCAAGAATCAGAACCAGAGTATTACACTGACCAGATCATCAAAGGGATTGTTTTGGTAAGCTTAGTAGGCCTTTGACCATAGGATTTGGGACCCTAACTTCAAGTTTAATTTCACGAAATTTCAACTTGTCTTATTCATTAACCATCAACTGCAGGTCATGCTGAATGCGGGGACTGAAACATCATCTGTGACAATAGAATGGGCGATGTCTCTTCTACTGAACCATCCAGAGGTGTTGGAGAAGGCCAGAAATGAAATAGACAACCATGTGGGTAAGGATCGTTTGATGGATGAAGCGGATTTACCCAAGCTGAAATACCTTCAAAGTATTATCTCCGAGACACTACGATTGTTCCCAGCAGCACCATTGCTAGTGCCTCATGAGTCATCTGAGGATTGCAAGGTCGCTGGCTTCCACATTCCACGAGGCACGATGCTACTGGTGAATGCTTGGTCCATCCACAGGGATCCTTTACTTTGGGAGGATCCAGAGAGCTTCAAGCCAGAAAGGTTTTATGGTGTGGAAGTGGAATCATGGAAGTTATTGCCTTTTGGAATGGGAAGGAGAGCTTGCCCTGGCTCCGGACTTGCTC</genome_strand>
        <mrna_strand>GAGGAGGCAAATCATTTTCGGGTGCTTGTAGAAGAGGTTATTTCGTTTGGCGGTGTATCAAATGCCGCGGATTTCATGCCTGCAATATTTCTGTTGTTTTTCAGGAGTACGGAGAAAAAAATAGCAAAGCTTGGTAATAAGATGGACAAGCTCTTGCAAGGTTTGGTTGATGAACATCGCCGCGATAAAAGCAGGAATACTATGATTGATCATTTGCTTTCTTTGCAAGAATCAGAACCAGAGTATTACACTGACCAGATCATCAAAGGGATTGTTTTG....................................................................................................GTCATGCTGAATGCGGGGACTGAAACATCATCTGTGACAATAGAATGGGCGATGTCTCTTCTACTGAACCATCCAGAGGTGTTGGAGAAGGCCAGAAATGAAATAGACAACCATGTGGGTAAGGATCGTTTGATGGATGAAGCGGATTTACCCAAGCTGAAATACCTTCAAAGTATTATCTCCGAGACACTACGATTGTTCCCAGCAGCACCATTGCTAGTGCCTCATGAGTCATCTGAGGATTGCAAGGTCGCTGGCTTCCACATTCCACGAGGCACGATGCTACTGGTGAATGCTTGGTCCATCCACAGGGATCCTTTACTTTGGGAGGATCCAGAGAGCTTCAAGCCAGAAAGGTTTTATGGTGTGGAAGTGGAATCATGGAAAGTATTGCCTTTTGGAATGGGAAAGAGAGCTTGCCCTGGCTCCGGACTTGCTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0017H17-A4Bcr/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E283518" ref_strand="+" ref_description="SGN-E283518 [cLER-12-C12]">
      <seq>gaatactatgactgatcattttctttctttgcaagaatcagaaccagagttttacactgtccagatcattaaagggattgttttggtcatgctgaatgcggggactgaaacatcatctgtgacaatagaatgggcgatgtctattctactgaaccatccataggtgttggagaaggccagaaatgaaatagacaaccatgtgggttaggatcgtttgatggatgaagcggatttaccccagctgaaataccttcaaagtgttatctccgagacactacgattgtttccagcatcaccaatgctagtgcctcatgagacatctgaggattgcaaggtcgctggctttcacattccacgaggcacgatgctactggtgaatgcttggtccatccacagggatcctttactt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0017H17-A4Bcr/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02SLe0017H17.1" temp_strand="-" temp_description="C02SLe0017H17.1  AC215447.2 htgs_phase:3 submitted_to_sgn_as:C02SLe0017H17 sequenced_by:kribb upload_account_name:korea">
        <position start="46564" stop="45456"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="46264" g_stop="46180" g_length="85"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="85" r_length="85" r_score="0.941"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="46179" i_stop="46080" i_length="100">
            <donor d_prob="0.807" d_score="0.94"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="46079" g_stop="45756" g_length="324"/>
          <reference_exon_boundary r_type="cDNA" r_start="86" r_stop="409" r_length="324" r_score="0.969"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLe0017H17.1" gen_strand="-" ref_id="SGN-E283518" ref_strand="+">
        <total_alignment_score>0.963</total_alignment_score>
        <cumulative_length_of_scored_exons>409</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0017H17.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E283518" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="46264" e_stop="46180"/>
          <exon e_start="46079" e_stop="45756"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAATACTATGATTGATCATTTGCTTTCTTTGCAAGAATCAGAACCAGAGTATTACACTGACCAGATCATCAAAGGGATTGTTTTGGTAAGCTTAGTAGGCCTTTGACCATAGGATTTGGGACCCTAACTTCAAGTTTAATTTCACGAAATTTCAACTTGTCTTATTCATTAACCATCAACTGCAGGTCATGCTGAATGCGGGGACTGAAACATCATCTGTGACAATAGAATGGGCGATGTCTCTTCTACTGAACCATCCAGAGGTGTTGGAGAAGGCCAGAAATGAAATAGACAACCATGTGGGTAAGGATCGTTTGATGGATGAAGCGGATTTACCCAAGCTGAAATACCTTCAAAGTATTATCTCCGAGACACTACGATTGTTCCCAGCAGCACCATTGCTAGTGCCTCATGAGTCATCTGAGGATTGCAAGGTCGCTGGCTTCCACATTCCACGAGGCACGATGCTACTGGTGAATGCTTGGTCCATCCACAGGGATCCTTTACTT</genome_strand>
        <mrna_strand>GAATACTATGACTGATCATTTTCTTTCTTTGCAAGAATCAGAACCAGAGTTTTACACTGTCCAGATCATTAAAGGGATTGTTTTG....................................................................................................GTCATGCTGAATGCGGGGACTGAAACATCATCTGTGACAATAGAATGGGCGATGTCTATTCTACTGAACCATCCATAGGTGTTGGAGAAGGCCAGAAATGAAATAGACAACCATGTGGGTTAGGATCGTTTGATGGATGAAGCGGATTTACCCCAGCTGAAATACCTTCAAAGTGTTATCTCCGAGACACTACGATTGTTTCCAGCATCACCAATGCTAGTGCCTCATGAGACATCTGAGGATTGCAAGGTCGCTGGCTTTCACATTCCACGAGGCACGATGCTACTGGTGAATGCTTGGTCCATCCACAGGGATCCTTTACTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0017H17-A4Bcr/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E703127" ref_strand="+" ref_description="SGN-E703127 [FA20CE09]">
      <seq>taactttgttgtatagtacttcactctctattttgtttgtgcttctacttgttaaacttgtttcatcaaaacgaagaaaactgaatctaccaccaagcccattgcttaaacttccaatattaggccatctctatctccttaaaccacctctatatcgcactcttgctaatctctcaacaaaatatggccctgttttctctcttcaattaggtacccgtcttgttgtagcaatttcctcaccatctgctgccgaagaatgtttcaccaaaaatgatatcgtttttgctaatcgccctcggacaatgactgcaaaattcataggctataactctactactgtcgttggttctccttatggtgatcactggcgctatcttcgccgcctctacgcacttgaaatattctccactaatcgtctcaacaattttcagtccactagacaagatgagatcagacttttagttcaaagagtgtttcacaaatctggagacaattttgtgactcctgttgagcttaagtccaagctttttcagatgtcgtataatattatcatgagaatggtagctggaaaaagatattacggtgaagagatagataacgaggaggcaaatcattttcgggtgcttgtagaagaggttatttcgtttgggggtgtatcaaatgccgcggatttcatgcctgcaatatttctgttgtttttcaggagtacggagaaaaaaatagcaaagcttggtaataagatggacaagctcttgcaaggtttggttgatgaacatcgccgcgataaaagcaggaatactatgattgatcatttgctttctttgcaagaatcagaaccagagtattacactgaccagatcatncaagggattgttttggtcatgctgaatgcggggactgaaacatcatctgtgacaatagaatgggcgatgtctcttctactg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0017H17-A4Bcr/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02SLe0017H17.1" temp_strand="-" temp_description="C02SLe0017H17.1  AC215447.2 htgs_phase:3 submitted_to_sgn_as:C02SLe0017H17 sequenced_by:kribb upload_account_name:korea">
        <position start="47357" stop="45714"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="47057" g_stop="46180" g_length="878"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="878" r_length="878" r_score="0.998"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="46179" i_stop="46080" i_length="100">
            <donor d_prob="0.807" d_score="0.96"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="46079" g_stop="46014" g_length="66"/>
          <reference_exon_boundary r_type="cDNA" r_start="879" r_stop="944" r_length="66" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLe0017H17.1" gen_strand="-" ref_id="SGN-E703127" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>944</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0017H17.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E703127" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="47057" e_stop="46180"/>
          <exon e_start="46079" e_stop="46014"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TAACTTTGTTGTATAGTACTTCACTCTCTATTTTGTTTGTGCTTCTACTTGTTAAACTTGTTTCATCAAAACGAAGAAAACTGAATCTACCACCAAGCCCATTGCTTAAACTTCCAATATTAGGCCATCTCTATCTCCTTAAACCACCTCTATATCGCACTCTTGCTAATCTCTCAACAAAATATGGCCCTGTTTTCTCTCTTCAATTAGGTACCCGTCTTGTTGTAGCAATTTCCTCACCATCTGCTGCCGAAGAATGTTTCACCAAAAATGATATCGTTTTTGCTAATCGCCCTCGGACAATGACTGCAAAATTCATAGGCTATAACTCTACTACTGTCGTTGGTTCTCCTTATGGTGATCACTGGCGCTATCTTCGCCGCCTCTACGCACTTGAAATATTCTCCACTAATCGTCTCAACAATTTTCAGTCCACTAGACAAGATGAGATCAGACTTTTAGTTCAAAGAGTGTTTCACAAATCTGGAGACAATTTTGTGACTCCTGTTGAGCTTAAGTCCAAGCTTTTTCAGATGTCGTATAATATTATCATGAGAATGGTAGCTGGAAAAAGATATTACGGTGAAGAGATAGATAACGAGGAGGCAAATCATTTTCGGGTGCTTGTAGAAGAGGTTATTTCGTTTGGGGGTGTATCAAATGCCGCGGATTTCATGCCTGCAATATTTCTGTTGTTTTTCAGGAGTACGGAGAAAAAAATAGCAAAGCTTGGTAATAAGATGGACAAGCTCTTGCAAGGTTTGGTTGATGAACATCGCCGCGATAAAAGCAGGAATACTATGATTGATCATTTGCTTTCTTTGCAAGAATCAGAACCAGAGTATTACACTGACCAGATCATCAAAGGGATTGTTTTGGTAAGCTTAGTAGGCCTTTGACCATAGGATTTGGGACCCTAACTTCAAGTTTAATTTCACGAAATTTCAACTTGTCTTATTCATTAACCATCAACTGCAGGTCATGCTGAATGCGGGGACTGAAACATCATCTGTGACAATAGAATGGGCGATGTCTCTTCTACTG</genome_strand>
        <mrna_strand>TAACTTTGTTGTATAGTACTTCACTCTCTATTTTGTTTGTGCTTCTACTTGTTAAACTTGTTTCATCAAAACGAAGAAAACTGAATCTACCACCAAGCCCATTGCTTAAACTTCCAATATTAGGCCATCTCTATCTCCTTAAACCACCTCTATATCGCACTCTTGCTAATCTCTCAACAAAATATGGCCCTGTTTTCTCTCTTCAATTAGGTACCCGTCTTGTTGTAGCAATTTCCTCACCATCTGCTGCCGAAGAATGTTTCACCAAAAATGATATCGTTTTTGCTAATCGCCCTCGGACAATGACTGCAAAATTCATAGGCTATAACTCTACTACTGTCGTTGGTTCTCCTTATGGTGATCACTGGCGCTATCTTCGCCGCCTCTACGCACTTGAAATATTCTCCACTAATCGTCTCAACAATTTTCAGTCCACTAGACAAGATGAGATCAGACTTTTAGTTCAAAGAGTGTTTCACAAATCTGGAGACAATTTTGTGACTCCTGTTGAGCTTAAGTCCAAGCTTTTTCAGATGTCGTATAATATTATCATGAGAATGGTAGCTGGAAAAAGATATTACGGTGAAGAGATAGATAACGAGGAGGCAAATCATTTTCGGGTGCTTGTAGAAGAGGTTATTTCGTTTGGGGGTGTATCAAATGCCGCGGATTTCATGCCTGCAATATTTCTGTTGTTTTTCAGGAGTACGGAGAAAAAAATAGCAAAGCTTGGTAATAAGATGGACAAGCTCTTGCAAGGTTTGGTTGATGAACATCGCCGCGATAAAAGCAGGAATACTATGATTGATCATTTGCTTTCTTTGCAAGAATCAGAACCAGAGTATTACACTGACCAGATCATNCAAGGGATTGTTTTG....................................................................................................GTCATGCTGAATGCGGGGACTGAAACATCATCTGTGACAATAGAATGGGCGATGTCTCTTCTACTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0017H17-A4Bcr/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E700498" ref_strand="+" ref_description="SGN-E700498 [FA13BB12]">
      <seq>taactttgttgtatagtacttcactctctattttgtttgtgcttctacttgttaaacttgtttcatcaaaacgaagaaaactgaatctaccaccaagcccattgcttaaacttccaatattaggccatctctatctccttaaaccacctctatatcgcactcttgctaatctctcaacaaaatatggccctgttttctctcttcaattaggtacccgtcttgttgtagcaatttcctcaccatctgctgccgaagaatgtttcaccaaaaatgatatcgtttttgctaatcgccctcggacaatgactgcaaaattcataggctataactctactactgtcgttggttctccttatggtgatcactggcgctatcttcgccgcctctacgcacttgaaatattctccactaatcgtctcaacaattttcagtccactagacaagatgagatcagacttttagttcaaagagtgtttcacaaatctggagacaattttgtgactcctgttgagcttaagtccaagctttttcagatgtcgtataatattatcatgagaatggtagctggaaaaagatattacggtgaagagatagataacgaggaggcaaatcattttcgggtgcttgtagaagaggttatttcgtttgggggtgtatcaaatgccgcggatttcatgcctgcaatatttctgttgtttttcaggagtacggagaaaaaaatagcaaagcttggtaataagatggacaagctcttgcaaggtttggttgatgaacatcgccgcgataaaagcaggaatactatgattgatcatttgctttctttgc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0017H17-A4Bcr/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02SLe0017H17.1" temp_strand="-" temp_description="C02SLe0017H17.1  AC215447.2 htgs_phase:3 submitted_to_sgn_as:C02SLe0017H17 sequenced_by:kribb upload_account_name:korea">
        <position start="47357" stop="45933"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="47057" g_stop="46233" g_length="825"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="825" r_length="825" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLe0017H17.1" gen_strand="-" ref_id="SGN-E700498" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>825</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0017H17.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E700498" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="47057" e_stop="46233"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TAACTTTGTTGTATAGTACTTCACTCTCTATTTTGTTTGTGCTTCTACTTGTTAAACTTGTTTCATCAAAACGAAGAAAACTGAATCTACCACCAAGCCCATTGCTTAAACTTCCAATATTAGGCCATCTCTATCTCCTTAAACCACCTCTATATCGCACTCTTGCTAATCTCTCAACAAAATATGGCCCTGTTTTCTCTCTTCAATTAGGTACCCGTCTTGTTGTAGCAATTTCCTCACCATCTGCTGCCGAAGAATGTTTCACCAAAAATGATATCGTTTTTGCTAATCGCCCTCGGACAATGACTGCAAAATTCATAGGCTATAACTCTACTACTGTCGTTGGTTCTCCTTATGGTGATCACTGGCGCTATCTTCGCCGCCTCTACGCACTTGAAATATTCTCCACTAATCGTCTCAACAATTTTCAGTCCACTAGACAAGATGAGATCAGACTTTTAGTTCAAAGAGTGTTTCACAAATCTGGAGACAATTTTGTGACTCCTGTTGAGCTTAAGTCCAAGCTTTTTCAGATGTCGTATAATATTATCATGAGAATGGTAGCTGGAAAAAGATATTACGGTGAAGAGATAGATAACGAGGAGGCAAATCATTTTCGGGTGCTTGTAGAAGAGGTTATTTCGTTTGGGGGTGTATCAAATGCCGCGGATTTCATGCCTGCAATATTTCTGTTGTTTTTCAGGAGTACGGAGAAAAAAATAGCAAAGCTTGGTAATAAGATGGACAAGCTCTTGCAAGGTTTGGTTGATGAACATCGCCGCGATAAAAGCAGGAATACTATGATTGATCATTTGCTTTCTTTGC</genome_strand>
        <mrna_strand>TAACTTTGTTGTATAGTACTTCACTCTCTATTTTGTTTGTGCTTCTACTTGTTAAACTTGTTTCATCAAAACGAAGAAAACTGAATCTACCACCAAGCCCATTGCTTAAACTTCCAATATTAGGCCATCTCTATCTCCTTAAACCACCTCTATATCGCACTCTTGCTAATCTCTCAACAAAATATGGCCCTGTTTTCTCTCTTCAATTAGGTACCCGTCTTGTTGTAGCAATTTCCTCACCATCTGCTGCCGAAGAATGTTTCACCAAAAATGATATCGTTTTTGCTAATCGCCCTCGGACAATGACTGCAAAATTCATAGGCTATAACTCTACTACTGTCGTTGGTTCTCCTTATGGTGATCACTGGCGCTATCTTCGCCGCCTCTACGCACTTGAAATATTCTCCACTAATCGTCTCAACAATTTTCAGTCCACTAGACAAGATGAGATCAGACTTTTAGTTCAAAGAGTGTTTCACAAATCTGGAGACAATTTTGTGACTCCTGTTGAGCTTAAGTCCAAGCTTTTTCAGATGTCGTATAATATTATCATGAGAATGGTAGCTGGAAAAAGATATTACGGTGAAGAGATAGATAACGAGGAGGCAAATCATTTTCGGGTGCTTGTAGAAGAGGTTATTTCGTTTGGGGGTGTATCAAATGCCGCGGATTTCATGCCTGCAATATTTCTGTTGTTTTTCAGGAGTACGGAGAAAAAAATAGCAAAGCTTGGTAATAAGATGGACAAGCTCTTGCAAGGTTTGGTTGATGAACATCGCCGCGATAAAAGCAGGAATACTATGATTGATCATTTGCTTTCTTTGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0017H17-A4Bcr/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E358323" ref_strand="+" ref_description="SGN-E358323 [cLHT-28-I2]">
      <seq>gcactcttgctaatctctcaactaaatatggccctgtactctctctgcaattaggtacccgtcttgttgtagcaatttcctcaccatctgctgccgaagaatgtttcacaaaaaatgatatcgtttttgctaatcgccctcggacaatgacggcaaaattcataggctataactctactacagtcattggttctccttatggtgatcactggcgctaccttcgccgcctctgcgcacttgaaatattctccactaatcgtctcaacaattttcagtccattagacaagatgaaatcaaacttttagttcgaagagtgtttcacaaatctggagacaattttgtgactcctgttgagcttaagtccaagctttttcagatgtcgtataatattatcatgagaatggtagctggaaaaagatattacggtgaagagatagataacgaggaggcaaatcattttcgggtgcttgtagaagaggttatttcttttgggggtgtatcaaatgccgaggatttcatgcctgcaatatttctgttttttcaggagtacggagaaaaaaatagcaaagcttggtaataagatggacaaggtcttgcaaggtttggttgatgaaca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0017H17-A4Bcr/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02SLe0017H17.1" temp_strand="-" temp_description="C02SLe0017H17.1  AC215447.2 htgs_phase:3 submitted_to_sgn_as:C02SLe0017H17 sequenced_by:kribb upload_account_name:korea">
        <position start="47201" stop="45983"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="46901" g_stop="46283" g_length="619"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="617" r_length="617" r_score="0.969"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLe0017H17.1" gen_strand="-" ref_id="SGN-E358323" ref_strand="+">
        <total_alignment_score>0.969</total_alignment_score>
        <cumulative_length_of_scored_exons>619</cumulative_length_of_scored_exons>
        <coverage percentage="1.003" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0017H17.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E358323" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="46901" e_stop="46283"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCACTCTTGCTAATCTCTCAACAAAATATGGCCCTGTTTTCTCTCTTCAATTAGGTACCCGTCTTGTTGTAGCAATTTCCTCACCATCTGCTGCCGAAGAATGTTTCACCAAAAATGATATCGTTTTTGCTAATCGCCCTCGGACAATGACTGCAAAATTCATAGGCTATAACTCTACTACTGTCGTTGGTTCTCCTTATGGTGATCACTGGCGCTATCTTCGCCGCCTCTACGCACTTGAAATATTCTCCACTAATCGTCTCAACAATTTTCAGTCCACTAGACAAGATGAGATCAGACTTTTAGTTCAAAGAGTGTTTCACAAATCTGGAGACAATTTTGTGACTCCTGTTGAGCTTAAGTCCAAGCTTTTTCAGATGTCGTATAATATTATCATGAGAATGGTAGCTGGAAAAAGATATTACGGTGAAGAGATAGATAACGAGGAGGCAAATCATTTTCGGGTGCTTGTAGAAGAGGTTATTTCGTTTGGGGGTGTATCAAATGCCGCGGATTTCATGCCTGCAATATTTCTGTTGTTTTTCAGGAGTACGGAGAAAAAAATAGCAAAGCTTGGTAATAAGATGGACAAGCTCTTGCAAGGTTTGGTTGATGAACA</genome_strand>
        <mrna_strand>GCACTCTTGCTAATCTCTCAACTAAATATGGCCCTGTACTCTCTCTGCAATTAGGTACCCGTCTTGTTGTAGCAATTTCCTCACCATCTGCTGCCGAAGAATGTTTCACAAAAAATGATATCGTTTTTGCTAATCGCCCTCGGACAATGACGGCAAAATTCATAGGCTATAACTCTACTACAGTCATTGGTTCTCCTTATGGTGATCACTGGCGCTACCTTCGCCGCCTCTGCGCACTTGAAATATTCTCCACTAATCGTCTCAACAATTTTCAGTCCATTAGACAAGATGAAATCAAACTTTTAGTTCGAAGAGTGTTTCACAAATCTGGAGACAATTTTGTGACTCCTGTTGAGCTTAAGTCCAAGCTTTTTCAGATGTCGTATAATATTATCATGAGAATGGTAGCTGGAAAAAGATATTACGGTGAAGAGATAGATAACGAGGAGGCAAATCATTTTCGGGTGCTTGTAGAAGAGGTTATTTCTTTTGGGGGTGTATCAAATGCCGAGGATTTCATGCCTGCAATATTTCTG-T-TTTTTCAGGAGTACGGAGAAAAAAATAGCAAAGCTTGGTAATAAGATGGACAAGGTCTTGCAAGGTTTGGTTGATGAACA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0017H17-A4Bcr/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E285800" ref_strand="+" ref_description="SGN-E285800 [cLES-5-B19]">
      <seq>caatttcctcaccatctgctgccgaagaatgtttcaccaaaaatgatatcgtttttgctaatcgccctcggacaatgactgcaaaattcataggctataactctactactgtcgttggttctccttatggtgatcactggcgctatcttcgccgcctctacgcacttgaaatattctccactaatcgtctcaacaattttcagtccactagacaagatgagatcagacttttagttcaaagagtgtttcacaaatctggagacaattttgtgactcctgttgagcttaagtccaagctttttcagatgtcgtataatattatcatgagaatggtagctggaaaaagatattacggtgaagagatagataacgaggaggcaaatcattttcgggtgcttgtagaagaggttatttcgtttgggggtgtatcaaatgccgtggatttcatgcctgcaatatttctgttgtttttcaggagtacggagaaaaaaatagcaaagc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0017H17-A4Bcr/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02SLe0017H17.1" temp_strand="-" temp_description="C02SLe0017H17.1  AC215447.2 htgs_phase:3 submitted_to_sgn_as:C02SLe0017H17 sequenced_by:kribb upload_account_name:korea">
        <position start="47129" stop="46029"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="46829" g_stop="46329" g_length="501"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="501" r_length="501" r_score="0.998"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLe0017H17.1" gen_strand="-" ref_id="SGN-E285800" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>501</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0017H17.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E285800" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="46829" e_stop="46329"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAATTTCCTCACCATCTGCTGCCGAAGAATGTTTCACCAAAAATGATATCGTTTTTGCTAATCGCCCTCGGACAATGACTGCAAAATTCATAGGCTATAACTCTACTACTGTCGTTGGTTCTCCTTATGGTGATCACTGGCGCTATCTTCGCCGCCTCTACGCACTTGAAATATTCTCCACTAATCGTCTCAACAATTTTCAGTCCACTAGACAAGATGAGATCAGACTTTTAGTTCAAAGAGTGTTTCACAAATCTGGAGACAATTTTGTGACTCCTGTTGAGCTTAAGTCCAAGCTTTTTCAGATGTCGTATAATATTATCATGAGAATGGTAGCTGGAAAAAGATATTACGGTGAAGAGATAGATAACGAGGAGGCAAATCATTTTCGGGTGCTTGTAGAAGAGGTTATTTCGTTTGGGGGTGTATCAAATGCCGCGGATTTCATGCCTGCAATATTTCTGTTGTTTTTCAGGAGTACGGAGAAAAAAATAGCAAAGC</genome_strand>
        <mrna_strand>CAATTTCCTCACCATCTGCTGCCGAAGAATGTTTCACCAAAAATGATATCGTTTTTGCTAATCGCCCTCGGACAATGACTGCAAAATTCATAGGCTATAACTCTACTACTGTCGTTGGTTCTCCTTATGGTGATCACTGGCGCTATCTTCGCCGCCTCTACGCACTTGAAATATTCTCCACTAATCGTCTCAACAATTTTCAGTCCACTAGACAAGATGAGATCAGACTTTTAGTTCAAAGAGTGTTTCACAAATCTGGAGACAATTTTGTGACTCCTGTTGAGCTTAAGTCCAAGCTTTTTCAGATGTCGTATAATATTATCATGAGAATGGTAGCTGGAAAAAGATATTACGGTGAAGAGATAGATAACGAGGAGGCAAATCATTTTCGGGTGCTTGTAGAAGAGGTTATTTCGTTTGGGGGTGTATCAAATGCCGTGGATTTCATGCCTGCAATATTTCTGTTGTTTTTCAGGAGTACGGAGAAAAAAATAGCAAAGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0017H17-A4Bcr/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E214721" ref_strand="+" ref_description="SGN-E214721 [cLEC-79-B18]">
      <seq>ctttgttgtatagtacttcactctctattttgtttgtgcttctacttgttaaacttgtttcatcaaaacgaagaaaactgaatctaccaccaagcccattgcttaaacttccaatattaggccatctctatctccttaaaccacctctatatcgcactcttgctaatctctcaacaaaatatggccctgttttctctcttcaattaggtacccgtcttgttgtagcaatttcctcaccatctgctgccgaagaatgtttcaccaaaaatgatatcgtttttgctaatcgccctcggacaatgactgcaaaattcataggctataactctactactgtcgttggttctccttatggtgatcactggcgctatcttcgccgcctctacgcacttgaaatattctccactaatcgtctcaacaattttcagtccactagacaagatgagatcagacttttagttcaaagagtgtttcacaaatctggagacaattttgtgactcctgttgagcttaagtccaagctttttcagatgtcgtataatattatcatgagaatggtagctggaaaaagatattacggtgaagagatagataacgangaggcaaatcattttcgggtgcttgtagaagaagttatttcngtttgggggtgtatcaaatgccgcggatttcatgcctgcaatatttct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0017H17-A4Bcr/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02SLe0017H17.1" temp_strand="-" temp_description="C02SLe0017H17.1  AC215447.2 htgs_phase:3 submitted_to_sgn_as:C02SLe0017H17 sequenced_by:kribb upload_account_name:korea">
        <position start="47354" stop="46067"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="47054" g_stop="46367" g_length="688"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="689" r_length="689" r_score="0.994"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLe0017H17.1" gen_strand="-" ref_id="SGN-E214721" ref_strand="+">
        <total_alignment_score>0.994</total_alignment_score>
        <cumulative_length_of_scored_exons>688</cumulative_length_of_scored_exons>
        <coverage percentage="0.999" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0017H17.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E214721" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="47054" e_stop="46367"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTTTGTTGTATAGTACTTCACTCTCTATTTTGTTTGTGCTTCTACTTGTTAAACTTGTTTCATCAAAACGAAGAAAACTGAATCTACCACCAAGCCCATTGCTTAAACTTCCAATATTAGGCCATCTCTATCTCCTTAAACCACCTCTATATCGCACTCTTGCTAATCTCTCAACAAAATATGGCCCTGTTTTCTCTCTTCAATTAGGTACCCGTCTTGTTGTAGCAATTTCCTCACCATCTGCTGCCGAAGAATGTTTCACCAAAAATGATATCGTTTTTGCTAATCGCCCTCGGACAATGACTGCAAAATTCATAGGCTATAACTCTACTACTGTCGTTGGTTCTCCTTATGGTGATCACTGGCGCTATCTTCGCCGCCTCTACGCACTTGAAATATTCTCCACTAATCGTCTCAACAATTTTCAGTCCACTAGACAAGATGAGATCAGACTTTTAGTTCAAAGAGTGTTTCACAAATCTGGAGACAATTTTGTGACTCCTGTTGAGCTTAAGTCCAAGCTTTTTCAGATGTCGTATAATATTATCATGAGAATGGTAGCTGGAAAAAGATATTACGGTGAAGAGATAGATAACGAGGAGGCAAATCATTTTCGGGTGCTTGTAGAAGAGGTTATTTC-GTTTGGGGGTGTATCAAATGCCGCGGATTTCATGCCTGCAATATTTCT</genome_strand>
        <mrna_strand>CTTTGTTGTATAGTACTTCACTCTCTATTTTGTTTGTGCTTCTACTTGTTAAACTTGTTTCATCAAAACGAAGAAAACTGAATCTACCACCAAGCCCATTGCTTAAACTTCCAATATTAGGCCATCTCTATCTCCTTAAACCACCTCTATATCGCACTCTTGCTAATCTCTCAACAAAATATGGCCCTGTTTTCTCTCTTCAATTAGGTACCCGTCTTGTTGTAGCAATTTCCTCACCATCTGCTGCCGAAGAATGTTTCACCAAAAATGATATCGTTTTTGCTAATCGCCCTCGGACAATGACTGCAAAATTCATAGGCTATAACTCTACTACTGTCGTTGGTTCTCCTTATGGTGATCACTGGCGCTATCTTCGCCGCCTCTACGCACTTGAAATATTCTCCACTAATCGTCTCAACAATTTTCAGTCCACTAGACAAGATGAGATCAGACTTTTAGTTCAAAGAGTGTTTCACAAATCTGGAGACAATTTTGTGACTCCTGTTGAGCTTAAGTCCAAGCTTTTTCAGATGTCGTATAATATTATCATGAGAATGGTAGCTGGAAAAAGATATTACGGTGAAGAGATAGATAACGANGAGGCAAATCATTTTCGGGTGCTTGTAGAAGAAGTTATTTCNGTTTGGGGGTGTATCAAATGCCGCGGATTTCATGCCTGCAATATTTCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0017H17-A4Bcr/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E549299" ref_strand="+" ref_description="SGN-E549299 [TUS-69-C5]">
      <seq>gaagtaactttgttgtatagtacttcactctctattttgtttgtgcttctacttgttaaacttgtttcatcaaaacgaagaaaacagaatctaccaccaagcccactacttaaacttccaatattaggccatctctatctccttaaaccacatctatatcgcactcttgctaatctctcaactaaatatggccctgttttctctcttcaattaggtacccgtcttgttgtagcaatttcctcaccatctgctgccgaagaatgtttcacaaaaaatgatatcgtttttgctaatcgccctcggacaatgacggcaaaattcataggctataactctactacagtcattggttctccttatggtgatcactggcgctaccttcgccgcctctgcgcacttgaaatattctccactaatcgtctcaacaattttcagtccattagacaagatgaaatcaaacttttagttcgaagagtgtttcacaaatctggagacaattttgtgactcctgttgagcttaagtccaagctttttcagatgtcgtataatattatcatgagaatggtagctggaaaaagatattacggtgaagagatagataacgaggaggcaaatcattttcgggtgcttgtagaagaggttatttcttttgggggtgtatcaaatgccgaggatttcatgcctg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0017H17-A4Bcr/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02SLe0017H17.1" temp_strand="-" temp_description="C02SLe0017H17.1  AC215447.2 htgs_phase:3 submitted_to_sgn_as:C02SLe0017H17 sequenced_by:kribb upload_account_name:korea">
        <position start="47361" stop="46077"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="47061" g_stop="46377" g_length="685"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="685" r_length="685" r_score="0.975"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLe0017H17.1" gen_strand="-" ref_id="SGN-E549299" ref_strand="+">
        <total_alignment_score>0.975</total_alignment_score>
        <cumulative_length_of_scored_exons>685</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0017H17.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E549299" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="47061" e_stop="46377"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAAGTAACTTTGTTGTATAGTACTTCACTCTCTATTTTGTTTGTGCTTCTACTTGTTAAACTTGTTTCATCAAAACGAAGAAAACTGAATCTACCACCAAGCCCATTGCTTAAACTTCCAATATTAGGCCATCTCTATCTCCTTAAACCACCTCTATATCGCACTCTTGCTAATCTCTCAACAAAATATGGCCCTGTTTTCTCTCTTCAATTAGGTACCCGTCTTGTTGTAGCAATTTCCTCACCATCTGCTGCCGAAGAATGTTTCACCAAAAATGATATCGTTTTTGCTAATCGCCCTCGGACAATGACTGCAAAATTCATAGGCTATAACTCTACTACTGTCGTTGGTTCTCCTTATGGTGATCACTGGCGCTATCTTCGCCGCCTCTACGCACTTGAAATATTCTCCACTAATCGTCTCAACAATTTTCAGTCCACTAGACAAGATGAGATCAGACTTTTAGTTCAAAGAGTGTTTCACAAATCTGGAGACAATTTTGTGACTCCTGTTGAGCTTAAGTCCAAGCTTTTTCAGATGTCGTATAATATTATCATGAGAATGGTAGCTGGAAAAAGATATTACGGTGAAGAGATAGATAACGAGGAGGCAAATCATTTTCGGGTGCTTGTAGAAGAGGTTATTTCGTTTGGGGGTGTATCAAATGCCGCGGATTTCATGCCTG</genome_strand>
        <mrna_strand>GAAGTAACTTTGTTGTATAGTACTTCACTCTCTATTTTGTTTGTGCTTCTACTTGTTAAACTTGTTTCATCAAAACGAAGAAAACAGAATCTACCACCAAGCCCACTACTTAAACTTCCAATATTAGGCCATCTCTATCTCCTTAAACCACATCTATATCGCACTCTTGCTAATCTCTCAACTAAATATGGCCCTGTTTTCTCTCTTCAATTAGGTACCCGTCTTGTTGTAGCAATTTCCTCACCATCTGCTGCCGAAGAATGTTTCACAAAAAATGATATCGTTTTTGCTAATCGCCCTCGGACAATGACGGCAAAATTCATAGGCTATAACTCTACTACAGTCATTGGTTCTCCTTATGGTGATCACTGGCGCTACCTTCGCCGCCTCTGCGCACTTGAAATATTCTCCACTAATCGTCTCAACAATTTTCAGTCCATTAGACAAGATGAAATCAAACTTTTAGTTCGAAGAGTGTTTCACAAATCTGGAGACAATTTTGTGACTCCTGTTGAGCTTAAGTCCAAGCTTTTTCAGATGTCGTATAATATTATCATGAGAATGGTAGCTGGAAAAAGATATTACGGTGAAGAGATAGATAACGAGGAGGCAAATCATTTTCGGGTGCTTGTAGAAGAGGTTATTTCTTTTGGGGGTGTATCAAATGCCGAGGATTTCATGCCTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0017H17-A4Bcr/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E546363" ref_strand="+" ref_description="SGN-E546363 [TUS-69-L1]">
      <seq>agtaactttgttgtatagtacttcactctctattttgtttgtgcttctacttgttaaacttgtttcatcaaaacgaagaaaactgaatctaccaccaagcccactacttaaacttccaatattaggccatctctatctccttaaaccacctctacatcgcactcttgctaatctctcaactaaatatggccctgttttctctcttcaattaggtacccgtcttgttgtagcaatttcctcaccatctgctgccgaagaatgtttcacaaaaaatgatatcgtttttgctaatcgccctcggacaatgacggcaaaattcataggctataactctactacagtcattggttctccttatggtgatcactggcgctaccttcgccgcctctgcgcacttgaaatattctccactaatcgtctcaacaattttcagtccattagacaagatgaaatcaaacttttagttcgaagagtgtttcacaaatctggagacaattttgtgactcctgttgagcttaagtccaagctttttcagatgtcgtataatattatcatgagaatggtagctggaaaaagatattacggtgaagagatagataacgaggaggcaaatcattttcgggtgcttgtagaagaggttatttcttttgggggtgtatcaaatgccgaggaattcatgcctg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0017H17-A4Bcr/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02SLe0017H17.1" temp_strand="-" temp_description="C02SLe0017H17.1  AC215447.2 htgs_phase:3 submitted_to_sgn_as:C02SLe0017H17 sequenced_by:kribb upload_account_name:korea">
        <position start="47359" stop="46077"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="47059" g_stop="46377" g_length="683"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="683" r_length="683" r_score="0.975"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLe0017H17.1" gen_strand="-" ref_id="SGN-E546363" ref_strand="+">
        <total_alignment_score>0.975</total_alignment_score>
        <cumulative_length_of_scored_exons>683</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0017H17.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E546363" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="47059" e_stop="46377"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGTAACTTTGTTGTATAGTACTTCACTCTCTATTTTGTTTGTGCTTCTACTTGTTAAACTTGTTTCATCAAAACGAAGAAAACTGAATCTACCACCAAGCCCATTGCTTAAACTTCCAATATTAGGCCATCTCTATCTCCTTAAACCACCTCTATATCGCACTCTTGCTAATCTCTCAACAAAATATGGCCCTGTTTTCTCTCTTCAATTAGGTACCCGTCTTGTTGTAGCAATTTCCTCACCATCTGCTGCCGAAGAATGTTTCACCAAAAATGATATCGTTTTTGCTAATCGCCCTCGGACAATGACTGCAAAATTCATAGGCTATAACTCTACTACTGTCGTTGGTTCTCCTTATGGTGATCACTGGCGCTATCTTCGCCGCCTCTACGCACTTGAAATATTCTCCACTAATCGTCTCAACAATTTTCAGTCCACTAGACAAGATGAGATCAGACTTTTAGTTCAAAGAGTGTTTCACAAATCTGGAGACAATTTTGTGACTCCTGTTGAGCTTAAGTCCAAGCTTTTTCAGATGTCGTATAATATTATCATGAGAATGGTAGCTGGAAAAAGATATTACGGTGAAGAGATAGATAACGAGGAGGCAAATCATTTTCGGGTGCTTGTAGAAGAGGTTATTTCGTTTGGGGGTGTATCAAATGCCGCGGATTTCATGCCTG</genome_strand>
        <mrna_strand>AGTAACTTTGTTGTATAGTACTTCACTCTCTATTTTGTTTGTGCTTCTACTTGTTAAACTTGTTTCATCAAAACGAAGAAAACTGAATCTACCACCAAGCCCACTACTTAAACTTCCAATATTAGGCCATCTCTATCTCCTTAAACCACCTCTACATCGCACTCTTGCTAATCTCTCAACTAAATATGGCCCTGTTTTCTCTCTTCAATTAGGTACCCGTCTTGTTGTAGCAATTTCCTCACCATCTGCTGCCGAAGAATGTTTCACAAAAAATGATATCGTTTTTGCTAATCGCCCTCGGACAATGACGGCAAAATTCATAGGCTATAACTCTACTACAGTCATTGGTTCTCCTTATGGTGATCACTGGCGCTACCTTCGCCGCCTCTGCGCACTTGAAATATTCTCCACTAATCGTCTCAACAATTTTCAGTCCATTAGACAAGATGAAATCAAACTTTTAGTTCGAAGAGTGTTTCACAAATCTGGAGACAATTTTGTGACTCCTGTTGAGCTTAAGTCCAAGCTTTTTCAGATGTCGTATAATATTATCATGAGAATGGTAGCTGGAAAAAGATATTACGGTGAAGAGATAGATAACGAGGAGGCAAATCATTTTCGGGTGCTTGTAGAAGAGGTTATTTCTTTTGGGGGTGTATCAAATGCCGAGGAATTCATGCCTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0017H17-A4Bcr/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E549385" ref_strand="+" ref_description="SGN-E549385 [TUS-69-O22]">
      <seq>gaagtaactttgttgtatagtacttcactctctattttgtttgtgcttctacttgttaaacttgtttcatcaaaacgaagaaaactgaatctaccaccaagcccactacttaaacttccaatattaggccatctctatctccttaaaccacctctacatcgcactcttgctaatctctcaactaaatatggccctgttttctctcttcaattaggtacccgtcttgttgtagcaatttcctcaccatctgctgccgaagaatgtttcacaaaaaatgatatcgtttttgctaatcgccctcggacaatgacggcaaaattcataggctataactctactacagtcattggttctccttatggtgatcactggcgctaccttcgccgcctctgcgcacttgaaatattctccactaatcgtctcaacaattttcagtccattagacaagatgaaatcaaacttttagttcgaagagtgtttcacaaatctggagacaattttgtgactcctgttgagcttaagtccaagctttttcagatgtcctataatattatcatgagaatggtagctggaaaaagatattacggtgaagagatagataacgaggaggcaaatcattttcgggggcttgtaaaaaaggttatttcttttgggg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0017H17-A4Bcr/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02SLe0017H17.1" temp_strand="-" temp_description="C02SLe0017H17.1  AC215447.2 htgs_phase:3 submitted_to_sgn_as:C02SLe0017H17 sequenced_by:kribb upload_account_name:korea">
        <position start="47361" stop="46107"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="47061" g_stop="46407" g_length="655"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="655" r_length="655" r_score="0.971"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLe0017H17.1" gen_strand="-" ref_id="SGN-E549385" ref_strand="+">
        <total_alignment_score>0.971</total_alignment_score>
        <cumulative_length_of_scored_exons>655</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0017H17.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E549385" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="47061" e_stop="46407"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAAGTAACTTTGTTGTATAGTACTTCACTCTCTATTTTGTTTGTGCTTCTACTTGTTAAACTTGTTTCATCAAAACGAAGAAAACTGAATCTACCACCAAGCCCATTGCTTAAACTTCCAATATTAGGCCATCTCTATCTCCTTAAACCACCTCTATATCGCACTCTTGCTAATCTCTCAACAAAATATGGCCCTGTTTTCTCTCTTCAATTAGGTACCCGTCTTGTTGTAGCAATTTCCTCACCATCTGCTGCCGAAGAATGTTTCACCAAAAATGATATCGTTTTTGCTAATCGCCCTCGGACAATGACTGCAAAATTCATAGGCTATAACTCTACTACTGTCGTTGGTTCTCCTTATGGTGATCACTGGCGCTATCTTCGCCGCCTCTACGCACTTGAAATATTCTCCACTAATCGTCTCAACAATTTTCAGTCCACTAGACAAGATGAGATCAGACTTTTAGTTCAAAGAGTGTTTCACAAATCTGGAGACAATTTTGTGACTCCTGTTGAGCTTAAGTCCAAGCTTTTTCAGATGTCGTATAATATTATCATGAGAATGGTAGCTGGAAAAAGATATTACGGTGAAGAGATAGATAACGAGGAGGCAAATCATTTTCGGGTGCTTGTAGAAGAGGTTATTTCGTTTGGGG</genome_strand>
        <mrna_strand>GAAGTAACTTTGTTGTATAGTACTTCACTCTCTATTTTGTTTGTGCTTCTACTTGTTAAACTTGTTTCATCAAAACGAAGAAAACTGAATCTACCACCAAGCCCACTACTTAAACTTCCAATATTAGGCCATCTCTATCTCCTTAAACCACCTCTACATCGCACTCTTGCTAATCTCTCAACTAAATATGGCCCTGTTTTCTCTCTTCAATTAGGTACCCGTCTTGTTGTAGCAATTTCCTCACCATCTGCTGCCGAAGAATGTTTCACAAAAAATGATATCGTTTTTGCTAATCGCCCTCGGACAATGACGGCAAAATTCATAGGCTATAACTCTACTACAGTCATTGGTTCTCCTTATGGTGATCACTGGCGCTACCTTCGCCGCCTCTGCGCACTTGAAATATTCTCCACTAATCGTCTCAACAATTTTCAGTCCATTAGACAAGATGAAATCAAACTTTTAGTTCGAAGAGTGTTTCACAAATCTGGAGACAATTTTGTGACTCCTGTTGAGCTTAAGTCCAAGCTTTTTCAGATGTCCTATAATATTATCATGAGAATGGTAGCTGGAAAAAGATATTACGGTGAAGAGATAGATAACGAGGAGGCAAATCATTTTCGGGGGCTTGTAAAAAAGGTTATTTCTTTTGGGG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0017H17-A4Bcr/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E359055" ref_strand="+" ref_description="SGN-E359055 [cLHT-11-O21]">
      <seq>tttgttgtatagtacttcactctctattttgtttgtgcttctacttgttaaacttgtttcatcaaaacgaagaaaacagaatctaccaccaagcccactacttaaacttccaatattaggccatctctatctccttaaaccacatctatatcgcactcttgctaatctctcaactaaatatggccctgttttctctcttcaattaggtacccgtcttgttgtagcaatttcctcaccatctgctgccgaagaatgtttcacaaaaaatgatatcgtttttgctaatcgccctcggacaatgacggcaaaattcataggctataactctactacagtcattggttctccttatggtgatcactggcgctaccttcgccgcctctgcgcacttgaaatattctccactaatcgtctcaacaattttcagtccattagacaagatgaaatcaaacttttagttcgaagagtgtttcacaaatctggagacaattttgtgactcctgttgagcttaagtccaagctttttcagatgtcgtataatattatcatgagaatggtagctggaaaaagatattacggtgaagagata</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0017H17-A4Bcr/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02SLe0017H17.1" temp_strand="-" temp_description="C02SLe0017H17.1  AC215447.2 htgs_phase:3 submitted_to_sgn_as:C02SLe0017H17 sequenced_by:kribb upload_account_name:korea">
        <position start="47353" stop="46165"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="47053" g_stop="46465" g_length="589"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="589" r_length="589" r_score="0.975"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLe0017H17.1" gen_strand="-" ref_id="SGN-E359055" ref_strand="+">
        <total_alignment_score>0.975</total_alignment_score>
        <cumulative_length_of_scored_exons>589</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0017H17.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E359055" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="47053" e_stop="46465"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTGTTGTATAGTACTTCACTCTCTATTTTGTTTGTGCTTCTACTTGTTAAACTTGTTTCATCAAAACGAAGAAAACTGAATCTACCACCAAGCCCATTGCTTAAACTTCCAATATTAGGCCATCTCTATCTCCTTAAACCACCTCTATATCGCACTCTTGCTAATCTCTCAACAAAATATGGCCCTGTTTTCTCTCTTCAATTAGGTACCCGTCTTGTTGTAGCAATTTCCTCACCATCTGCTGCCGAAGAATGTTTCACCAAAAATGATATCGTTTTTGCTAATCGCCCTCGGACAATGACTGCAAAATTCATAGGCTATAACTCTACTACTGTCGTTGGTTCTCCTTATGGTGATCACTGGCGCTATCTTCGCCGCCTCTACGCACTTGAAATATTCTCCACTAATCGTCTCAACAATTTTCAGTCCACTAGACAAGATGAGATCAGACTTTTAGTTCAAAGAGTGTTTCACAAATCTGGAGACAATTTTGTGACTCCTGTTGAGCTTAAGTCCAAGCTTTTTCAGATGTCGTATAATATTATCATGAGAATGGTAGCTGGAAAAAGATATTACGGTGAAGAGATA</genome_strand>
        <mrna_strand>TTTGTTGTATAGTACTTCACTCTCTATTTTGTTTGTGCTTCTACTTGTTAAACTTGTTTCATCAAAACGAAGAAAACAGAATCTACCACCAAGCCCACTACTTAAACTTCCAATATTAGGCCATCTCTATCTCCTTAAACCACATCTATATCGCACTCTTGCTAATCTCTCAACTAAATATGGCCCTGTTTTCTCTCTTCAATTAGGTACCCGTCTTGTTGTAGCAATTTCCTCACCATCTGCTGCCGAAGAATGTTTCACAAAAAATGATATCGTTTTTGCTAATCGCCCTCGGACAATGACGGCAAAATTCATAGGCTATAACTCTACTACAGTCATTGGTTCTCCTTATGGTGATCACTGGCGCTACCTTCGCCGCCTCTGCGCACTTGAAATATTCTCCACTAATCGTCTCAACAATTTTCAGTCCATTAGACAAGATGAAATCAAACTTTTAGTTCGAAGAGTGTTTCACAAATCTGGAGACAATTTTGTGACTCCTGTTGAGCTTAAGTCCAAGCTTTTTCAGATGTCGTATAATATTATCATGAGAATGGTAGCTGGAAAAAGATATTACGGTGAAGAGATA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0017H17-A4Bcr/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E287761" ref_strand="+" ref_description="SGN-E287761 [cLES-19-C23]">
      <seq>cttaaaccacctctatatcgcactcttgctaatctctcaacaaaatatggccctgttttctctcttcaattaggtacccgtcttgttgtagcaatttcctcaccatctgctgccgaagaatgtttcaccaaaaatgatatcgtttttgctaatcgccctcggacaatgactgcaaaattcataggctataactctactactgtcgttggttctccttatggtgatcactggcgctatcttcgccgcctctacgcacttgaaatattctccactaatcgtctcaacaattttcagtccactagacaagatgagatcagacttttagttcaaagagtgtttcacaaatctggagacaattttgtgactcctgttgagcttaagtccaagctttttcagatgtcgtataatattatcatgagaatggtagctggaaaaagatattac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0017H17-A4Bcr/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02SLe0017H17.1" temp_strand="-" temp_description="C02SLe0017H17.1  AC215447.2 htgs_phase:3 submitted_to_sgn_as:C02SLe0017H17 sequenced_by:kribb upload_account_name:korea">
        <position start="47220" stop="46177"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="46920" g_stop="46477" g_length="444"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="444" r_length="444" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLe0017H17.1" gen_strand="-" ref_id="SGN-E287761" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>444</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0017H17.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E287761" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="46920" e_stop="46477"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTTAAACCACCTCTATATCGCACTCTTGCTAATCTCTCAACAAAATATGGCCCTGTTTTCTCTCTTCAATTAGGTACCCGTCTTGTTGTAGCAATTTCCTCACCATCTGCTGCCGAAGAATGTTTCACCAAAAATGATATCGTTTTTGCTAATCGCCCTCGGACAATGACTGCAAAATTCATAGGCTATAACTCTACTACTGTCGTTGGTTCTCCTTATGGTGATCACTGGCGCTATCTTCGCCGCCTCTACGCACTTGAAATATTCTCCACTAATCGTCTCAACAATTTTCAGTCCACTAGACAAGATGAGATCAGACTTTTAGTTCAAAGAGTGTTTCACAAATCTGGAGACAATTTTGTGACTCCTGTTGAGCTTAAGTCCAAGCTTTTTCAGATGTCGTATAATATTATCATGAGAATGGTAGCTGGAAAAAGATATTAC</genome_strand>
        <mrna_strand>CTTAAACCACCTCTATATCGCACTCTTGCTAATCTCTCAACAAAATATGGCCCTGTTTTCTCTCTTCAATTAGGTACCCGTCTTGTTGTAGCAATTTCCTCACCATCTGCTGCCGAAGAATGTTTCACCAAAAATGATATCGTTTTTGCTAATCGCCCTCGGACAATGACTGCAAAATTCATAGGCTATAACTCTACTACTGTCGTTGGTTCTCCTTATGGTGATCACTGGCGCTATCTTCGCCGCCTCTACGCACTTGAAATATTCTCCACTAATCGTCTCAACAATTTTCAGTCCACTAGACAAGATGAGATCAGACTTTTAGTTCAAAGAGTGTTTCACAAATCTGGAGACAATTTTGTGACTCCTGTTGAGCTTAAGTCCAAGCTTTTTCAGATGTCGTATAATATTATCATGAGAATGGTAGCTGGAAAAAGATATTAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0017H17-A4Bcr/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E358048" ref_strand="+" ref_description="SGN-E358048 [cLHT-32-J13]">
      <seq>aactttgttgtatagtacttcactctgtattttgtttgggcttctacttgagaaacttgtttcatcaaaacgaagaaaactgaatctaccaccaagcccactacttaaacttccaatattaggccatctctatctccttaaactacctctacatcgcactcttgctaatctctcaactaaatatggccctgttttctctcttcaattaggtacccgtcttgttgtagcaatttcctcatcatctgctgccgaagaatgtttcacaaaaaatgatatcgtttttgctaatcgccctcggacaatgacggcgaaattcataggctataactctactacagtcgttggttctccttatggtgatcactggcgctaccttcgccgcctctgcgcacttgaaatattctccactaatcgtctcaacaattttcagtccattagacaagatgaaatcaaacttttagttcaaagagtgtttcacaaatctggagacaattttgtgactcctgttgagcttaagtccaagctttttcagatgtcgtataatattatcatgagaatggtagctggaaagag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0017H17-A4Bcr/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02SLe0017H17.1" temp_strand="-" temp_description="C02SLe0017H17.1  AC215447.2 htgs_phase:3 submitted_to_sgn_as:C02SLe0017H17 sequenced_by:kribb upload_account_name:korea">
        <position start="47356" stop="46184"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="47056" g_stop="46484" g_length="573"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="573" r_length="573" r_score="0.965"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLe0017H17.1" gen_strand="-" ref_id="SGN-E358048" ref_strand="+">
        <total_alignment_score>0.965</total_alignment_score>
        <cumulative_length_of_scored_exons>573</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0017H17.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E358048" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="47056" e_stop="46484"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AACTTTGTTGTATAGTACTTCACTCTCTATTTTGTTTGTGCTTCTACTTGTTAAACTTGTTTCATCAAAACGAAGAAAACTGAATCTACCACCAAGCCCATTGCTTAAACTTCCAATATTAGGCCATCTCTATCTCCTTAAACCACCTCTATATCGCACTCTTGCTAATCTCTCAACAAAATATGGCCCTGTTTTCTCTCTTCAATTAGGTACCCGTCTTGTTGTAGCAATTTCCTCACCATCTGCTGCCGAAGAATGTTTCACCAAAAATGATATCGTTTTTGCTAATCGCCCTCGGACAATGACTGCAAAATTCATAGGCTATAACTCTACTACTGTCGTTGGTTCTCCTTATGGTGATCACTGGCGCTATCTTCGCCGCCTCTACGCACTTGAAATATTCTCCACTAATCGTCTCAACAATTTTCAGTCCACTAGACAAGATGAGATCAGACTTTTAGTTCAAAGAGTGTTTCACAAATCTGGAGACAATTTTGTGACTCCTGTTGAGCTTAAGTCCAAGCTTTTTCAGATGTCGTATAATATTATCATGAGAATGGTAGCTGGAAAAAG</genome_strand>
        <mrna_strand>AACTTTGTTGTATAGTACTTCACTCTGTATTTTGTTTGGGCTTCTACTTGAGAAACTTGTTTCATCAAAACGAAGAAAACTGAATCTACCACCAAGCCCACTACTTAAACTTCCAATATTAGGCCATCTCTATCTCCTTAAACTACCTCTACATCGCACTCTTGCTAATCTCTCAACTAAATATGGCCCTGTTTTCTCTCTTCAATTAGGTACCCGTCTTGTTGTAGCAATTTCCTCATCATCTGCTGCCGAAGAATGTTTCACAAAAAATGATATCGTTTTTGCTAATCGCCCTCGGACAATGACGGCGAAATTCATAGGCTATAACTCTACTACAGTCGTTGGTTCTCCTTATGGTGATCACTGGCGCTACCTTCGCCGCCTCTGCGCACTTGAAATATTCTCCACTAATCGTCTCAACAATTTTCAGTCCATTAGACAAGATGAAATCAAACTTTTAGTTCAAAGAGTGTTTCACAAATCTGGAGACAATTTTGTGACTCCTGTTGAGCTTAAGTCCAAGCTTTTTCAGATGTCGTATAATATTATCATGAGAATGGTAGCTGGAAAGAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0017H17-A4Bcr/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E355583" ref_strand="+" ref_description="SGN-E355583 [cLHT-1-C17]">
      <seq>gcaaataatggaagtaactttgttgtatagtacttcactctctattttgtttgtgcttctacttgttaaacttgtttcatcaaaacgaagaaaacagaatctaccaccaagcccactacttaaacttccaatattaggccatctctatctccttaaaccacatctatatcgcactcttgctaatctctcaactaaatatggccctgttttctctcttcaattaggtacccggcttgttgtagcaatttcctcaccatctgctgccgaagaatgtttcacaaaaaatgatatcgtttttgctaatcgccctcggacaatgacggcaaaattcataggctataactctactacagtcattggttctccttatggtgatcactggcgctaccttcgccgcctctgcgcacttgaaatattctccactaatcgtctcagcaattttcagtccattagacaagatgaaatcaaacttttagttcgaagagtgtttcacaaatctggagacaattttgtgactcctgttgagcttaagtccaagctttttcagatgtcgcataatattatcatgagaatggtagctggaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0017H17-A4Bcr/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02SLe0017H17.1" temp_strand="-" temp_description="C02SLe0017H17.1  AC215447.2 htgs_phase:3 submitted_to_sgn_as:C02SLe0017H17 sequenced_by:kribb upload_account_name:korea">
        <position start="47371" stop="46185"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="47071" g_stop="46485" g_length="587"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="587" r_length="587" r_score="0.969"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLe0017H17.1" gen_strand="-" ref_id="SGN-E355583" ref_strand="+">
        <total_alignment_score>0.969</total_alignment_score>
        <cumulative_length_of_scored_exons>587</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0017H17.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E355583" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="47071" e_stop="46485"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCAAATAATGGAAGTAACTTTGTTGTATAGTACTTCACTCTCTATTTTGTTTGTGCTTCTACTTGTTAAACTTGTTTCATCAAAACGAAGAAAACTGAATCTACCACCAAGCCCATTGCTTAAACTTCCAATATTAGGCCATCTCTATCTCCTTAAACCACCTCTATATCGCACTCTTGCTAATCTCTCAACAAAATATGGCCCTGTTTTCTCTCTTCAATTAGGTACCCGTCTTGTTGTAGCAATTTCCTCACCATCTGCTGCCGAAGAATGTTTCACCAAAAATGATATCGTTTTTGCTAATCGCCCTCGGACAATGACTGCAAAATTCATAGGCTATAACTCTACTACTGTCGTTGGTTCTCCTTATGGTGATCACTGGCGCTATCTTCGCCGCCTCTACGCACTTGAAATATTCTCCACTAATCGTCTCAACAATTTTCAGTCCACTAGACAAGATGAGATCAGACTTTTAGTTCAAAGAGTGTTTCACAAATCTGGAGACAATTTTGTGACTCCTGTTGAGCTTAAGTCCAAGCTTTTTCAGATGTCGTATAATATTATCATGAGAATGGTAGCTGGAAAAA</genome_strand>
        <mrna_strand>GCAAATAATGGAAGTAACTTTGTTGTATAGTACTTCACTCTCTATTTTGTTTGTGCTTCTACTTGTTAAACTTGTTTCATCAAAACGAAGAAAACAGAATCTACCACCAAGCCCACTACTTAAACTTCCAATATTAGGCCATCTCTATCTCCTTAAACCACATCTATATCGCACTCTTGCTAATCTCTCAACTAAATATGGCCCTGTTTTCTCTCTTCAATTAGGTACCCGGCTTGTTGTAGCAATTTCCTCACCATCTGCTGCCGAAGAATGTTTCACAAAAAATGATATCGTTTTTGCTAATCGCCCTCGGACAATGACGGCAAAATTCATAGGCTATAACTCTACTACAGTCATTGGTTCTCCTTATGGTGATCACTGGCGCTACCTTCGCCGCCTCTGCGCACTTGAAATATTCTCCACTAATCGTCTCAGCAATTTTCAGTCCATTAGACAAGATGAAATCAAACTTTTAGTTCGAAGAGTGTTTCACAAATCTGGAGACAATTTTGTGACTCCTGTTGAGCTTAAGTCCAAGCTTTTTCAGATGTCGCATAATATTATCATGAGAATGGTAGCTGGAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0017H17-A4Bcr/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E358808" ref_strand="+" ref_description="SGN-E358808 [cLHT-24-J11]">
      <seq>tggaagtaactttgttgtatagtacttcactctctattttgtttgtgcttctacttgttaaacttgtttcatcaaaacgaagaaaacagaatctaccaccaagcccactacttaaacttccaatattaggccatctctatctccttaaaccacatctatatcgcactcttgctaatctctcaactaaatatggccctgttttctctcttcaattaggtacccgtcttgttgtagcaatttcctcaccatctgctgccgaagaatgtttcacaaaaaatgatatcgtttttgctaatcgccctcggacaatgacggcaaaattcataggctataactctactacagtcattggttctccttatggtgatcactggcgctaccttcgccgcctctgcgcacttgaaatattctccactaatcgtctcaacaattttcagtccattagacaagatgaaatcaaacttttagttcgaagagtgtttcacaaatctggagacaattttgtgactcctgttgagcttaagtccaagctttttcagatgtcgtataatattatcatgagaatggtagctggaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0017H17-A4Bcr/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02SLe0017H17.1" temp_strand="-" temp_description="C02SLe0017H17.1  AC215447.2 htgs_phase:3 submitted_to_sgn_as:C02SLe0017H17 sequenced_by:kribb upload_account_name:korea">
        <position start="47363" stop="46186"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="47063" g_stop="46486" g_length="578"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="578" r_length="578" r_score="0.974"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLe0017H17.1" gen_strand="-" ref_id="SGN-E358808" ref_strand="+">
        <total_alignment_score>0.974</total_alignment_score>
        <cumulative_length_of_scored_exons>578</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0017H17.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E358808" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="47063" e_stop="46486"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGGAAGTAACTTTGTTGTATAGTACTTCACTCTCTATTTTGTTTGTGCTTCTACTTGTTAAACTTGTTTCATCAAAACGAAGAAAACTGAATCTACCACCAAGCCCATTGCTTAAACTTCCAATATTAGGCCATCTCTATCTCCTTAAACCACCTCTATATCGCACTCTTGCTAATCTCTCAACAAAATATGGCCCTGTTTTCTCTCTTCAATTAGGTACCCGTCTTGTTGTAGCAATTTCCTCACCATCTGCTGCCGAAGAATGTTTCACCAAAAATGATATCGTTTTTGCTAATCGCCCTCGGACAATGACTGCAAAATTCATAGGCTATAACTCTACTACTGTCGTTGGTTCTCCTTATGGTGATCACTGGCGCTATCTTCGCCGCCTCTACGCACTTGAAATATTCTCCACTAATCGTCTCAACAATTTTCAGTCCACTAGACAAGATGAGATCAGACTTTTAGTTCAAAGAGTGTTTCACAAATCTGGAGACAATTTTGTGACTCCTGTTGAGCTTAAGTCCAAGCTTTTTCAGATGTCGTATAATATTATCATGAGAATGGTAGCTGGAAAA</genome_strand>
        <mrna_strand>TGGAAGTAACTTTGTTGTATAGTACTTCACTCTCTATTTTGTTTGTGCTTCTACTTGTTAAACTTGTTTCATCAAAACGAAGAAAACAGAATCTACCACCAAGCCCACTACTTAAACTTCCAATATTAGGCCATCTCTATCTCCTTAAACCACATCTATATCGCACTCTTGCTAATCTCTCAACTAAATATGGCCCTGTTTTCTCTCTTCAATTAGGTACCCGTCTTGTTGTAGCAATTTCCTCACCATCTGCTGCCGAAGAATGTTTCACAAAAAATGATATCGTTTTTGCTAATCGCCCTCGGACAATGACGGCAAAATTCATAGGCTATAACTCTACTACAGTCATTGGTTCTCCTTATGGTGATCACTGGCGCTACCTTCGCCGCCTCTGCGCACTTGAAATATTCTCCACTAATCGTCTCAACAATTTTCAGTCCATTAGACAAGATGAAATCAAACTTTTAGTTCGAAGAGTGTTTCACAAATCTGGAGACAATTTTGTGACTCCTGTTGAGCTTAAGTCCAAGCTTTTTCAGATGTCGTATAATATTATCATGAGAATGGTAGCTGGAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0017H17-A4Bcr/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E355591" ref_strand="+" ref_description="SGN-E355591 [cLHT-1-I19]">
      <seq>tggaagtaactttgttgtatagtacttcactctctattttgtttgtgcttctacttgttaaacttgtttcatcaaaacgaagaaaactgaatctaccaccaagcccactacttaaacttccaatattaggccatctctatctccttaaaccacctctacatcgcactcttgctaatctctcaactaaatatggccctgttttctctcttcaattaggtacccgtcttgttgtagcaatttcctcaccatctgctgccgaagaatgtttcacaaaaaatgatatcgtttttgctaatcgccctcggacaatgacggcaaaattcataggctataactctactacagtcattggttctccttatggtgatcactggcgctaccttcgccgcctctgcgcacttgaaatattctccactaatcgtctcaacaattttcagtccattagacaagatgaaatcaaacttttagttcgaagagtgtttcacaaatctggagacaattttgtgactcctgttgagcttaagtccaagctttttcagatgtcgtataatattatcatgagaatggtagctggaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0017H17-A4Bcr/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02SLe0017H17.1" temp_strand="-" temp_description="C02SLe0017H17.1  AC215447.2 htgs_phase:3 submitted_to_sgn_as:C02SLe0017H17 sequenced_by:kribb upload_account_name:korea">
        <position start="47363" stop="46186"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="47063" g_stop="46486" g_length="578"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="578" r_length="578" r_score="0.976"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLe0017H17.1" gen_strand="-" ref_id="SGN-E355591" ref_strand="+">
        <total_alignment_score>0.976</total_alignment_score>
        <cumulative_length_of_scored_exons>578</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0017H17.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E355591" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="47063" e_stop="46486"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGGAAGTAACTTTGTTGTATAGTACTTCACTCTCTATTTTGTTTGTGCTTCTACTTGTTAAACTTGTTTCATCAAAACGAAGAAAACTGAATCTACCACCAAGCCCATTGCTTAAACTTCCAATATTAGGCCATCTCTATCTCCTTAAACCACCTCTATATCGCACTCTTGCTAATCTCTCAACAAAATATGGCCCTGTTTTCTCTCTTCAATTAGGTACCCGTCTTGTTGTAGCAATTTCCTCACCATCTGCTGCCGAAGAATGTTTCACCAAAAATGATATCGTTTTTGCTAATCGCCCTCGGACAATGACTGCAAAATTCATAGGCTATAACTCTACTACTGTCGTTGGTTCTCCTTATGGTGATCACTGGCGCTATCTTCGCCGCCTCTACGCACTTGAAATATTCTCCACTAATCGTCTCAACAATTTTCAGTCCACTAGACAAGATGAGATCAGACTTTTAGTTCAAAGAGTGTTTCACAAATCTGGAGACAATTTTGTGACTCCTGTTGAGCTTAAGTCCAAGCTTTTTCAGATGTCGTATAATATTATCATGAGAATGGTAGCTGGAAAA</genome_strand>
        <mrna_strand>TGGAAGTAACTTTGTTGTATAGTACTTCACTCTCTATTTTGTTTGTGCTTCTACTTGTTAAACTTGTTTCATCAAAACGAAGAAAACTGAATCTACCACCAAGCCCACTACTTAAACTTCCAATATTAGGCCATCTCTATCTCCTTAAACCACCTCTACATCGCACTCTTGCTAATCTCTCAACTAAATATGGCCCTGTTTTCTCTCTTCAATTAGGTACCCGTCTTGTTGTAGCAATTTCCTCACCATCTGCTGCCGAAGAATGTTTCACAAAAAATGATATCGTTTTTGCTAATCGCCCTCGGACAATGACGGCAAAATTCATAGGCTATAACTCTACTACAGTCATTGGTTCTCCTTATGGTGATCACTGGCGCTACCTTCGCCGCCTCTGCGCACTTGAAATATTCTCCACTAATCGTCTCAACAATTTTCAGTCCATTAGACAAGATGAAATCAAACTTTTAGTTCGAAGAGTGTTTCACAAATCTGGAGACAATTTTGTGACTCCTGTTGAGCTTAAGTCCAAGCTTTTTCAGATGTCGTATAATATTATCATGAGAATGGTAGCTGGAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0017H17-A4Bcr/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E355691" ref_strand="+" ref_description="SGN-E355691 [cLHT-1-E10]">
      <seq>tacttgttaaacttgtttcatcaaaacgaagaaaactgaatctaccaccaagcccactacttaaacttccaatattaggccatctctatctccttaaaccacctctacatcgcactcttgctaatctctcaactaaatatggccctgttttctctcttcaattaggtacccgtcttgttgtagcaatttcctcaccatctgctgccgaagaatgtttcacaaaaaatgatatcgtttttgctaatcgccctcggacaatgacggcaaaattcataggctataactctactacagtcattggttctccttatggtgatcactggcgctaccttcgccgcctctgcgcacttgaaatattctccactaatcgtctcaacaattttcagtccattagacaagatgaaatcaaacttttagttcgaagagtgtttcacaaatctggagacaattttgtgactcctgttgagcttaagtccaagctttttcagatgtcgtataatattatcatgagaatggtagctggaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0017H17-A4Bcr/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02SLe0017H17.1" temp_strand="-" temp_description="C02SLe0017H17.1  AC215447.2 htgs_phase:3 submitted_to_sgn_as:C02SLe0017H17 sequenced_by:kribb upload_account_name:korea">
        <position start="47312" stop="46186"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="47012" g_stop="46486" g_length="527"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="527" r_length="527" r_score="0.973"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLe0017H17.1" gen_strand="-" ref_id="SGN-E355691" ref_strand="+">
        <total_alignment_score>0.973</total_alignment_score>
        <cumulative_length_of_scored_exons>527</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0017H17.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E355691" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="47012" e_stop="46486"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TACTTGTTAAACTTGTTTCATCAAAACGAAGAAAACTGAATCTACCACCAAGCCCATTGCTTAAACTTCCAATATTAGGCCATCTCTATCTCCTTAAACCACCTCTATATCGCACTCTTGCTAATCTCTCAACAAAATATGGCCCTGTTTTCTCTCTTCAATTAGGTACCCGTCTTGTTGTAGCAATTTCCTCACCATCTGCTGCCGAAGAATGTTTCACCAAAAATGATATCGTTTTTGCTAATCGCCCTCGGACAATGACTGCAAAATTCATAGGCTATAACTCTACTACTGTCGTTGGTTCTCCTTATGGTGATCACTGGCGCTATCTTCGCCGCCTCTACGCACTTGAAATATTCTCCACTAATCGTCTCAACAATTTTCAGTCCACTAGACAAGATGAGATCAGACTTTTAGTTCAAAGAGTGTTTCACAAATCTGGAGACAATTTTGTGACTCCTGTTGAGCTTAAGTCCAAGCTTTTTCAGATGTCGTATAATATTATCATGAGAATGGTAGCTGGAAAA</genome_strand>
        <mrna_strand>TACTTGTTAAACTTGTTTCATCAAAACGAAGAAAACTGAATCTACCACCAAGCCCACTACTTAAACTTCCAATATTAGGCCATCTCTATCTCCTTAAACCACCTCTACATCGCACTCTTGCTAATCTCTCAACTAAATATGGCCCTGTTTTCTCTCTTCAATTAGGTACCCGTCTTGTTGTAGCAATTTCCTCACCATCTGCTGCCGAAGAATGTTTCACAAAAAATGATATCGTTTTTGCTAATCGCCCTCGGACAATGACGGCAAAATTCATAGGCTATAACTCTACTACAGTCATTGGTTCTCCTTATGGTGATCACTGGCGCTACCTTCGCCGCCTCTGCGCACTTGAAATATTCTCCACTAATCGTCTCAACAATTTTCAGTCCATTAGACAAGATGAAATCAAACTTTTAGTTCGAAGAGTGTTTCACAAATCTGGAGACAATTTTGTGACTCCTGTTGAGCTTAAGTCCAAGCTTTTTCAGATGTCGTATAATATTATCATGAGAATGGTAGCTGGAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0017H17-A4Bcr/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E355999" ref_strand="+" ref_description="SGN-E355999 [cLHT-21-H19]">
      <seq>tttgttgtatagtacttcactctctattttgtttgtgcttctacttgttaaacttgtttcatcaaaacgaagaaaacagaatctaccaccaagcccactacttaaacttccaatattaggccatctctatctccttaaaccacatctatatcgcactcttgctaatctctcaactaaatatggccctgttttctctcttcaattaggtacccgtcttgttgtagcaatttcctcaccatctgctgccgaagaatgtttcacaaaaaatgatatcggttttgctaatcgccctcggacaatgacggcaaaattcataggctataactctactacagtcattggttctccttatggtgatcactggcgctaccttcgccgcctctgcgcacttgaaatattctccactaatcgtctcaacaattttcagtccattagacaagatgaaatcaaacttttagttcgaagagtgtttcacaaatctggagacaattttgtgactcctgttgagcttaagtccaagctttttcagatgtcgtttaatattatcatgagaatggtagctggaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0017H17-A4Bcr/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02SLe0017H17.1" temp_strand="-" temp_description="C02SLe0017H17.1  AC215447.2 htgs_phase:3 submitted_to_sgn_as:C02SLe0017H17 sequenced_by:kribb upload_account_name:korea">
        <position start="47353" stop="46187"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="47053" g_stop="46487" g_length="567"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="567" r_length="567" r_score="0.970"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLe0017H17.1" gen_strand="-" ref_id="SGN-E355999" ref_strand="+">
        <total_alignment_score>0.970</total_alignment_score>
        <cumulative_length_of_scored_exons>567</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0017H17.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E355999" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="47053" e_stop="46487"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTGTTGTATAGTACTTCACTCTCTATTTTGTTTGTGCTTCTACTTGTTAAACTTGTTTCATCAAAACGAAGAAAACTGAATCTACCACCAAGCCCATTGCTTAAACTTCCAATATTAGGCCATCTCTATCTCCTTAAACCACCTCTATATCGCACTCTTGCTAATCTCTCAACAAAATATGGCCCTGTTTTCTCTCTTCAATTAGGTACCCGTCTTGTTGTAGCAATTTCCTCACCATCTGCTGCCGAAGAATGTTTCACCAAAAATGATATCGTTTTTGCTAATCGCCCTCGGACAATGACTGCAAAATTCATAGGCTATAACTCTACTACTGTCGTTGGTTCTCCTTATGGTGATCACTGGCGCTATCTTCGCCGCCTCTACGCACTTGAAATATTCTCCACTAATCGTCTCAACAATTTTCAGTCCACTAGACAAGATGAGATCAGACTTTTAGTTCAAAGAGTGTTTCACAAATCTGGAGACAATTTTGTGACTCCTGTTGAGCTTAAGTCCAAGCTTTTTCAGATGTCGTATAATATTATCATGAGAATGGTAGCTGGAAA</genome_strand>
        <mrna_strand>TTTGTTGTATAGTACTTCACTCTCTATTTTGTTTGTGCTTCTACTTGTTAAACTTGTTTCATCAAAACGAAGAAAACAGAATCTACCACCAAGCCCACTACTTAAACTTCCAATATTAGGCCATCTCTATCTCCTTAAACCACATCTATATCGCACTCTTGCTAATCTCTCAACTAAATATGGCCCTGTTTTCTCTCTTCAATTAGGTACCCGTCTTGTTGTAGCAATTTCCTCACCATCTGCTGCCGAAGAATGTTTCACAAAAAATGATATCGGTTTTGCTAATCGCCCTCGGACAATGACGGCAAAATTCATAGGCTATAACTCTACTACAGTCATTGGTTCTCCTTATGGTGATCACTGGCGCTACCTTCGCCGCCTCTGCGCACTTGAAATATTCTCCACTAATCGTCTCAACAATTTTCAGTCCATTAGACAAGATGAAATCAAACTTTTAGTTCGAAGAGTGTTTCACAAATCTGGAGACAATTTTGTGACTCCTGTTGAGCTTAAGTCCAAGCTTTTTCAGATGTCGTTTAATATTATCATGAGAATGGTAGCTGGAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0017H17-A4Bcr/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E206855" ref_strand="+" ref_description="SGN-E206855 [cLEC-33-I16]">
      <seq>ctgaatctaccaccaagcccattgcttaaacttccaatattaggccatctctatctccttaaaccacctctatatcgcactcttgctaatctctcaacaaaatatggccctgttttctctcttcaattaggtacccgtcttgttgtagcaatttcctcaccatctgctgccgaagaatgtttcaccaaaaatgatatcgtttttgctaatcgccctcggacaatgactgcaaaattcataggctataactctactactgtcgttggttctccttatggtgatcactggcgctatcttcgccgcctctacgcacttgaaatattctccactaatcgtctcaacaattttcagtccactagacaagatgagatcagacttttagttcaaagagtgtttcacaaatctggagacaattttgtgactcctgttgagcttaagtccaagctttttcagatgtcgtataatattatcatgagaatggtagctggaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0017H17-A4Bcr/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02SLe0017H17.1" temp_strand="-" temp_description="C02SLe0017H17.1  AC215447.2 htgs_phase:3 submitted_to_sgn_as:C02SLe0017H17 sequenced_by:kribb upload_account_name:korea">
        <position start="47277" stop="46187"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="46977" g_stop="46487" g_length="491"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="491" r_length="491" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLe0017H17.1" gen_strand="-" ref_id="SGN-E206855" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>491</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0017H17.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E206855" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="46977" e_stop="46487"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTGAATCTACCACCAAGCCCATTGCTTAAACTTCCAATATTAGGCCATCTCTATCTCCTTAAACCACCTCTATATCGCACTCTTGCTAATCTCTCAACAAAATATGGCCCTGTTTTCTCTCTTCAATTAGGTACCCGTCTTGTTGTAGCAATTTCCTCACCATCTGCTGCCGAAGAATGTTTCACCAAAAATGATATCGTTTTTGCTAATCGCCCTCGGACAATGACTGCAAAATTCATAGGCTATAACTCTACTACTGTCGTTGGTTCTCCTTATGGTGATCACTGGCGCTATCTTCGCCGCCTCTACGCACTTGAAATATTCTCCACTAATCGTCTCAACAATTTTCAGTCCACTAGACAAGATGAGATCAGACTTTTAGTTCAAAGAGTGTTTCACAAATCTGGAGACAATTTTGTGACTCCTGTTGAGCTTAAGTCCAAGCTTTTTCAGATGTCGTATAATATTATCATGAGAATGGTAGCTGGAAA</genome_strand>
        <mrna_strand>CTGAATCTACCACCAAGCCCATTGCTTAAACTTCCAATATTAGGCCATCTCTATCTCCTTAAACCACCTCTATATCGCACTCTTGCTAATCTCTCAACAAAATATGGCCCTGTTTTCTCTCTTCAATTAGGTACCCGTCTTGTTGTAGCAATTTCCTCACCATCTGCTGCCGAAGAATGTTTCACCAAAAATGATATCGTTTTTGCTAATCGCCCTCGGACAATGACTGCAAAATTCATAGGCTATAACTCTACTACTGTCGTTGGTTCTCCTTATGGTGATCACTGGCGCTATCTTCGCCGCCTCTACGCACTTGAAATATTCTCCACTAATCGTCTCAACAATTTTCAGTCCACTAGACAAGATGAGATCAGACTTTTAGTTCAAAGAGTGTTTCACAAATCTGGAGACAATTTTGTGACTCCTGTTGAGCTTAAGTCCAAGCTTTTTCAGATGTCGTATAATATTATCATGAGAATGGTAGCTGGAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0017H17-A4Bcr/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E358500" ref_strand="+" ref_description="SGN-E358500 [cLHT-35-N7]">
      <seq>taactttgttgtatagtacttcactctctattttgtttgtgcttctacttgttaaacttgtttcatcaaaaccaacaaaactgaatctaccaccaagcccactacttaaacttccaatattaggccatctctatctccttaaactacctctacatcgcactcttgctaatctctcaactaaatatggccctgttttctctcttcaattaggtacccgtcttgttgtagcaatttcctcatcatctgctgccgaagaatgtttcacaaaaaatgatatcgtttttgctaatcgccctcggacaatgacggcaaaattcataggctataactctactacagtcgttggttctccttatggtgatcactggcgctaccttcgccgcctctgcgcacttgaaatattctccactaatcgtctcaacaattttcagtccattagacaagatgaaatcaaacttttagttcaaagagtgtttcacaaatctggagacaattttgtgactcctgttgagcttaagtccaagctttttcagatgtcgtataatattatcatgagaatggtagctggaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0017H17-A4Bcr/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02SLe0017H17.1" temp_strand="-" temp_description="C02SLe0017H17.1  AC215447.2 htgs_phase:3 submitted_to_sgn_as:C02SLe0017H17 sequenced_by:kribb upload_account_name:korea">
        <position start="47357" stop="46188"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="47057" g_stop="46488" g_length="570"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="570" r_length="570" r_score="0.972"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLe0017H17.1" gen_strand="-" ref_id="SGN-E358500" ref_strand="+">
        <total_alignment_score>0.972</total_alignment_score>
        <cumulative_length_of_scored_exons>570</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0017H17.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E358500" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="47057" e_stop="46488"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TAACTTTGTTGTATAGTACTTCACTCTCTATTTTGTTTGTGCTTCTACTTGTTAAACTTGTTTCATCAAAACGAAGAAAACTGAATCTACCACCAAGCCCATTGCTTAAACTTCCAATATTAGGCCATCTCTATCTCCTTAAACCACCTCTATATCGCACTCTTGCTAATCTCTCAACAAAATATGGCCCTGTTTTCTCTCTTCAATTAGGTACCCGTCTTGTTGTAGCAATTTCCTCACCATCTGCTGCCGAAGAATGTTTCACCAAAAATGATATCGTTTTTGCTAATCGCCCTCGGACAATGACTGCAAAATTCATAGGCTATAACTCTACTACTGTCGTTGGTTCTCCTTATGGTGATCACTGGCGCTATCTTCGCCGCCTCTACGCACTTGAAATATTCTCCACTAATCGTCTCAACAATTTTCAGTCCACTAGACAAGATGAGATCAGACTTTTAGTTCAAAGAGTGTTTCACAAATCTGGAGACAATTTTGTGACTCCTGTTGAGCTTAAGTCCAAGCTTTTTCAGATGTCGTATAATATTATCATGAGAATGGTAGCTGGAA</genome_strand>
        <mrna_strand>TAACTTTGTTGTATAGTACTTCACTCTCTATTTTGTTTGTGCTTCTACTTGTTAAACTTGTTTCATCAAAACCAACAAAACTGAATCTACCACCAAGCCCACTACTTAAACTTCCAATATTAGGCCATCTCTATCTCCTTAAACTACCTCTACATCGCACTCTTGCTAATCTCTCAACTAAATATGGCCCTGTTTTCTCTCTTCAATTAGGTACCCGTCTTGTTGTAGCAATTTCCTCATCATCTGCTGCCGAAGAATGTTTCACAAAAAATGATATCGTTTTTGCTAATCGCCCTCGGACAATGACGGCAAAATTCATAGGCTATAACTCTACTACAGTCGTTGGTTCTCCTTATGGTGATCACTGGCGCTACCTTCGCCGCCTCTGCGCACTTGAAATATTCTCCACTAATCGTCTCAACAATTTTCAGTCCATTAGACAAGATGAAATCAAACTTTTAGTTCAAAGAGTGTTTCACAAATCTGGAGACAATTTTGTGACTCCTGTTGAGCTTAAGTCCAAGCTTTTTCAGATGTCGTATAATATTATCATGAGAATGGTAGCTGGAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0017H17-A4Bcr/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E207980" ref_strand="+" ref_description="SGN-E207980 [cLEC-34-F12]">
      <seq>tgttgtatagtacttcactctctattttgtttgtgcttctacttgttaaacttgtttcatcaaaacgaagaaaactgaatctaccaccaagcccattgcttaaacttccaatattaggccatctctatctccttaaaccacctctatatcgcactcttgctaatctctcaacaaaatatggccctgttttctctcttcaattaggtacccgtcttgttgtagcaatttcctcaccatctgctgccgaagaatgtttcaccaaaaatgatatcgtttttgctaatcgccctcggacaatgactgcaaaattcataggctataactctactactgtcgttggttctccttatggtgatcactggcgctatcttcgccgcctctacgcacttgaaatattctccactaatcgtctcaacaattttcagtccactagacaagatgagatcagacttttagttcaaagagtgtttcacaaatctggagacaattttgtgactcctgttgagcttaagtccaagctttttcagatgtcgcataatattatcatga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0017H17-A4Bcr/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02SLe0017H17.1" temp_strand="-" temp_description="C02SLe0017H17.1  AC215447.2 htgs_phase:3 submitted_to_sgn_as:C02SLe0017H17 sequenced_by:kribb upload_account_name:korea">
        <position start="47351" stop="46203"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="47051" g_stop="46503" g_length="549"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="549" r_length="549" r_score="0.998"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLe0017H17.1" gen_strand="-" ref_id="SGN-E207980" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>549</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0017H17.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E207980" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="47051" e_stop="46503"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGTTGTATAGTACTTCACTCTCTATTTTGTTTGTGCTTCTACTTGTTAAACTTGTTTCATCAAAACGAAGAAAACTGAATCTACCACCAAGCCCATTGCTTAAACTTCCAATATTAGGCCATCTCTATCTCCTTAAACCACCTCTATATCGCACTCTTGCTAATCTCTCAACAAAATATGGCCCTGTTTTCTCTCTTCAATTAGGTACCCGTCTTGTTGTAGCAATTTCCTCACCATCTGCTGCCGAAGAATGTTTCACCAAAAATGATATCGTTTTTGCTAATCGCCCTCGGACAATGACTGCAAAATTCATAGGCTATAACTCTACTACTGTCGTTGGTTCTCCTTATGGTGATCACTGGCGCTATCTTCGCCGCCTCTACGCACTTGAAATATTCTCCACTAATCGTCTCAACAATTTTCAGTCCACTAGACAAGATGAGATCAGACTTTTAGTTCAAAGAGTGTTTCACAAATCTGGAGACAATTTTGTGACTCCTGTTGAGCTTAAGTCCAAGCTTTTTCAGATGTCGTATAATATTATCATGA</genome_strand>
        <mrna_strand>TGTTGTATAGTACTTCACTCTCTATTTTGTTTGTGCTTCTACTTGTTAAACTTGTTTCATCAAAACGAAGAAAACTGAATCTACCACCAAGCCCATTGCTTAAACTTCCAATATTAGGCCATCTCTATCTCCTTAAACCACCTCTATATCGCACTCTTGCTAATCTCTCAACAAAATATGGCCCTGTTTTCTCTCTTCAATTAGGTACCCGTCTTGTTGTAGCAATTTCCTCACCATCTGCTGCCGAAGAATGTTTCACCAAAAATGATATCGTTTTTGCTAATCGCCCTCGGACAATGACTGCAAAATTCATAGGCTATAACTCTACTACTGTCGTTGGTTCTCCTTATGGTGATCACTGGCGCTATCTTCGCCGCCTCTACGCACTTGAAATATTCTCCACTAATCGTCTCAACAATTTTCAGTCCACTAGACAAGATGAGATCAGACTTTTAGTTCAAAGAGTGTTTCACAAATCTGGAGACAATTTTGTGACTCCTGTTGAGCTTAAGTCCAAGCTTTTTCAGATGTCGCATAATATTATCATGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0017H17-A4Bcr/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E355665" ref_strand="+" ref_description="SGN-E355665 [cLHT-1-G1]">
      <seq>aaataatggaagtaactttgttgtatagtacttcactctctattttgtttgtgcttctacttgttaaacttgtttcatcaaaacgaagaaaacagaatctaccaccaagcccactacttaaacttccaatattaggccatctctatctccttaaaccacatctatatcgcactcttgctaatctctcaactaaatatggccctgttttctctcttcaattaggtacccgtcttgttgtagcaatttcctcaccatctgctgccgaagaatgtttcacaaaaaatgatatcgtttttgctaatcgccctcggacaatgacggcaaaattcataggctataactctactacagtcattggttctccttatggtgatcactggcgctaccttcgccgcctctgcgcacttgaaatattctccactaatcgtctcaacaattttcagtccattagacaagatgaaatcaaacttttagttcgaagagtgtttcacaaatctggagacaattttgtgactcctgttgagcttaagtccaagctttttcagatgtcgtataatattatcatg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0017H17-A4Bcr/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02SLe0017H17.1" temp_strand="-" temp_description="C02SLe0017H17.1  AC215447.2 htgs_phase:3 submitted_to_sgn_as:C02SLe0017H17 sequenced_by:kribb upload_account_name:korea">
        <position start="47369" stop="46204"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="47069" g_stop="46504" g_length="566"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="566" r_length="566" r_score="0.973"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLe0017H17.1" gen_strand="-" ref_id="SGN-E355665" ref_strand="+">
        <total_alignment_score>0.973</total_alignment_score>
        <cumulative_length_of_scored_exons>566</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0017H17.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E355665" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="47069" e_stop="46504"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAATAATGGAAGTAACTTTGTTGTATAGTACTTCACTCTCTATTTTGTTTGTGCTTCTACTTGTTAAACTTGTTTCATCAAAACGAAGAAAACTGAATCTACCACCAAGCCCATTGCTTAAACTTCCAATATTAGGCCATCTCTATCTCCTTAAACCACCTCTATATCGCACTCTTGCTAATCTCTCAACAAAATATGGCCCTGTTTTCTCTCTTCAATTAGGTACCCGTCTTGTTGTAGCAATTTCCTCACCATCTGCTGCCGAAGAATGTTTCACCAAAAATGATATCGTTTTTGCTAATCGCCCTCGGACAATGACTGCAAAATTCATAGGCTATAACTCTACTACTGTCGTTGGTTCTCCTTATGGTGATCACTGGCGCTATCTTCGCCGCCTCTACGCACTTGAAATATTCTCCACTAATCGTCTCAACAATTTTCAGTCCACTAGACAAGATGAGATCAGACTTTTAGTTCAAAGAGTGTTTCACAAATCTGGAGACAATTTTGTGACTCCTGTTGAGCTTAAGTCCAAGCTTTTTCAGATGTCGTATAATATTATCATG</genome_strand>
        <mrna_strand>AAATAATGGAAGTAACTTTGTTGTATAGTACTTCACTCTCTATTTTGTTTGTGCTTCTACTTGTTAAACTTGTTTCATCAAAACGAAGAAAACAGAATCTACCACCAAGCCCACTACTTAAACTTCCAATATTAGGCCATCTCTATCTCCTTAAACCACATCTATATCGCACTCTTGCTAATCTCTCAACTAAATATGGCCCTGTTTTCTCTCTTCAATTAGGTACCCGTCTTGTTGTAGCAATTTCCTCACCATCTGCTGCCGAAGAATGTTTCACAAAAAATGATATCGTTTTTGCTAATCGCCCTCGGACAATGACGGCAAAATTCATAGGCTATAACTCTACTACAGTCATTGGTTCTCCTTATGGTGATCACTGGCGCTACCTTCGCCGCCTCTGCGCACTTGAAATATTCTCCACTAATCGTCTCAACAATTTTCAGTCCATTAGACAAGATGAAATCAAACTTTTAGTTCGAAGAGTGTTTCACAAATCTGGAGACAATTTTGTGACTCCTGTTGAGCTTAAGTCCAAGCTTTTTCAGATGTCGTATAATATTATCATG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0017H17-A4Bcr/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E358817" ref_strand="+" ref_description="SGN-E358817 [cLHT-24-N11]">
      <seq>tttgttgtatagtacttcactctctattttgtttgtgcttctacttgttaaacttgtttcatcaaaacgaagaaaacagaatctaccaccaagcccactacttaaacttccaatattaggccatctctatctccttaaaccacatctatatcgcactcttgctaatctctcaactaaatatggccctgttttctctcttcaattaggtacccgtcttgttgtagcaatttcctcaccatctgctgccgaagaatgtttcacaaaaaatgatatcgtttttgctaatcgccctcggacaatgacggcaaaattcataggctataactctactacagtcattggttctccttatggtgatcactggcgctaccttcgccgcctctgcgcacttgaaatattctccactaatcgtctcaacaattttcagtccattagacaagatgaaatcaaacttttagttcgaagagtgtttcacaaatctggagacaattttgtgactcctgttgagcttaagtccaagctttttcagatgtcgtataatattatcatg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0017H17-A4Bcr/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02SLe0017H17.1" temp_strand="-" temp_description="C02SLe0017H17.1  AC215447.2 htgs_phase:3 submitted_to_sgn_as:C02SLe0017H17 sequenced_by:kribb upload_account_name:korea">
        <position start="47353" stop="46204"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="47053" g_stop="46504" g_length="550"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="550" r_length="550" r_score="0.973"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLe0017H17.1" gen_strand="-" ref_id="SGN-E358817" ref_strand="+">
        <total_alignment_score>0.973</total_alignment_score>
        <cumulative_length_of_scored_exons>550</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0017H17.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E358817" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="47053" e_stop="46504"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTGTTGTATAGTACTTCACTCTCTATTTTGTTTGTGCTTCTACTTGTTAAACTTGTTTCATCAAAACGAAGAAAACTGAATCTACCACCAAGCCCATTGCTTAAACTTCCAATATTAGGCCATCTCTATCTCCTTAAACCACCTCTATATCGCACTCTTGCTAATCTCTCAACAAAATATGGCCCTGTTTTCTCTCTTCAATTAGGTACCCGTCTTGTTGTAGCAATTTCCTCACCATCTGCTGCCGAAGAATGTTTCACCAAAAATGATATCGTTTTTGCTAATCGCCCTCGGACAATGACTGCAAAATTCATAGGCTATAACTCTACTACTGTCGTTGGTTCTCCTTATGGTGATCACTGGCGCTATCTTCGCCGCCTCTACGCACTTGAAATATTCTCCACTAATCGTCTCAACAATTTTCAGTCCACTAGACAAGATGAGATCAGACTTTTAGTTCAAAGAGTGTTTCACAAATCTGGAGACAATTTTGTGACTCCTGTTGAGCTTAAGTCCAAGCTTTTTCAGATGTCGTATAATATTATCATG</genome_strand>
        <mrna_strand>TTTGTTGTATAGTACTTCACTCTCTATTTTGTTTGTGCTTCTACTTGTTAAACTTGTTTCATCAAAACGAAGAAAACAGAATCTACCACCAAGCCCACTACTTAAACTTCCAATATTAGGCCATCTCTATCTCCTTAAACCACATCTATATCGCACTCTTGCTAATCTCTCAACTAAATATGGCCCTGTTTTCTCTCTTCAATTAGGTACCCGTCTTGTTGTAGCAATTTCCTCACCATCTGCTGCCGAAGAATGTTTCACAAAAAATGATATCGTTTTTGCTAATCGCCCTCGGACAATGACGGCAAAATTCATAGGCTATAACTCTACTACAGTCATTGGTTCTCCTTATGGTGATCACTGGCGCTACCTTCGCCGCCTCTGCGCACTTGAAATATTCTCCACTAATCGTCTCAACAATTTTCAGTCCATTAGACAAGATGAAATCAAACTTTTAGTTCGAAGAGTGTTTCACAAATCTGGAGACAATTTTGTGACTCCTGTTGAGCTTAAGTCCAAGCTTTTTCAGATGTCGTATAATATTATCATG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0017H17-A4Bcr/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E359406" ref_strand="+" ref_description="SGN-E359406 [cLHT-31-M7]">
      <seq>tggaagtaactttgttgtatagtacttcactctctattttgtttgtgcttctacttgttaaacttgtttcatcaaaacgaagaaaacagaatctaccaccaagcccactacttaaacttccaatattaggccatctctatctccttaaaccacatctatatcgcactcttgctaatctctcaactaaatatggccctgttttctctcttcaattaggtacccgtcttgttgtagcaatttcctcaccatctgctgccgaagaatgtttcacaaaaaatgatatcgtttttgctaatcgccctcggacaatgacggcaaaattcataggctataactctactacagtcattggttctccttatggtgatcactggcgctaccttcgccgcctctgcgcacttgaaatattctccactaatcgtctcaacaattttcagtccattagacaagatgaaatcaaacttttagttcgaagagtgtttcacaaatctggagacaattttgtgactcctgttgagct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0017H17-A4Bcr/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02SLe0017H17.1" temp_strand="-" temp_description="C02SLe0017H17.1  AC215447.2 htgs_phase:3 submitted_to_sgn_as:C02SLe0017H17 sequenced_by:kribb upload_account_name:korea">
        <position start="47363" stop="46244"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="47063" g_stop="46544" g_length="520"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="520" r_length="520" r_score="0.971"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLe0017H17.1" gen_strand="-" ref_id="SGN-E359406" ref_strand="+">
        <total_alignment_score>0.971</total_alignment_score>
        <cumulative_length_of_scored_exons>520</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0017H17.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E359406" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="47063" e_stop="46544"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGGAAGTAACTTTGTTGTATAGTACTTCACTCTCTATTTTGTTTGTGCTTCTACTTGTTAAACTTGTTTCATCAAAACGAAGAAAACTGAATCTACCACCAAGCCCATTGCTTAAACTTCCAATATTAGGCCATCTCTATCTCCTTAAACCACCTCTATATCGCACTCTTGCTAATCTCTCAACAAAATATGGCCCTGTTTTCTCTCTTCAATTAGGTACCCGTCTTGTTGTAGCAATTTCCTCACCATCTGCTGCCGAAGAATGTTTCACCAAAAATGATATCGTTTTTGCTAATCGCCCTCGGACAATGACTGCAAAATTCATAGGCTATAACTCTACTACTGTCGTTGGTTCTCCTTATGGTGATCACTGGCGCTATCTTCGCCGCCTCTACGCACTTGAAATATTCTCCACTAATCGTCTCAACAATTTTCAGTCCACTAGACAAGATGAGATCAGACTTTTAGTTCAAAGAGTGTTTCACAAATCTGGAGACAATTTTGTGACTCCTGTTGAGCT</genome_strand>
        <mrna_strand>TGGAAGTAACTTTGTTGTATAGTACTTCACTCTCTATTTTGTTTGTGCTTCTACTTGTTAAACTTGTTTCATCAAAACGAAGAAAACAGAATCTACCACCAAGCCCACTACTTAAACTTCCAATATTAGGCCATCTCTATCTCCTTAAACCACATCTATATCGCACTCTTGCTAATCTCTCAACTAAATATGGCCCTGTTTTCTCTCTTCAATTAGGTACCCGTCTTGTTGTAGCAATTTCCTCACCATCTGCTGCCGAAGAATGTTTCACAAAAAATGATATCGTTTTTGCTAATCGCCCTCGGACAATGACGGCAAAATTCATAGGCTATAACTCTACTACAGTCATTGGTTCTCCTTATGGTGATCACTGGCGCTACCTTCGCCGCCTCTGCGCACTTGAAATATTCTCCACTAATCGTCTCAACAATTTTCAGTCCATTAGACAAGATGAAATCAAACTTTTAGTTCGAAGAGTGTTTCACAAATCTGGAGACAATTTTGTGACTCCTGTTGAGCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0017H17-A4Bcr/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E357208" ref_strand="+" ref_description="SGN-E357208 [cLHT-17-D9]">
      <seq>agtaactttgttgtatagtacttcactctctattttgtttgtgcttctacttgttaaacttgtttcatcaaaacgaagaaaactgaatctaccaccaagcccactacttaaacttccaatattaggccatctctatctccttaaaccacctctacatcgcactcttgctaatctctcaactaaatatggccctgttttctctcttcaattaagtacccgccttgttgtagcaatttcctcaccatctgctgccgaagaatgtttcacaaaaaatgatatcgtttttgctaatcgccctcggacaatgacggcaaaattcataggctataactctactacagtcattggttctccttatggtgatcactggcgctaccttcgccgcctctgcgcacttgaaatattctccactaatcggctcaacaattttcagtccattacacaagatgaaatcaaacttttagttcgaagagtgtttcacaaatctggagacaattttgtgact</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0017H17-A4Bcr/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02SLe0017H17.1" temp_strand="-" temp_description="C02SLe0017H17.1  AC215447.2 htgs_phase:3 submitted_to_sgn_as:C02SLe0017H17 sequenced_by:kribb upload_account_name:korea">
        <position start="47359" stop="46255"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="47059" g_stop="46555" g_length="505"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="505" r_length="505" r_score="0.964"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLe0017H17.1" gen_strand="-" ref_id="SGN-E357208" ref_strand="+">
        <total_alignment_score>0.964</total_alignment_score>
        <cumulative_length_of_scored_exons>505</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0017H17.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E357208" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="47059" e_stop="46555"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGTAACTTTGTTGTATAGTACTTCACTCTCTATTTTGTTTGTGCTTCTACTTGTTAAACTTGTTTCATCAAAACGAAGAAAACTGAATCTACCACCAAGCCCATTGCTTAAACTTCCAATATTAGGCCATCTCTATCTCCTTAAACCACCTCTATATCGCACTCTTGCTAATCTCTCAACAAAATATGGCCCTGTTTTCTCTCTTCAATTAGGTACCCGTCTTGTTGTAGCAATTTCCTCACCATCTGCTGCCGAAGAATGTTTCACCAAAAATGATATCGTTTTTGCTAATCGCCCTCGGACAATGACTGCAAAATTCATAGGCTATAACTCTACTACTGTCGTTGGTTCTCCTTATGGTGATCACTGGCGCTATCTTCGCCGCCTCTACGCACTTGAAATATTCTCCACTAATCGTCTCAACAATTTTCAGTCCACTAGACAAGATGAGATCAGACTTTTAGTTCAAAGAGTGTTTCACAAATCTGGAGACAATTTTGTGACT</genome_strand>
        <mrna_strand>AGTAACTTTGTTGTATAGTACTTCACTCTCTATTTTGTTTGTGCTTCTACTTGTTAAACTTGTTTCATCAAAACGAAGAAAACTGAATCTACCACCAAGCCCACTACTTAAACTTCCAATATTAGGCCATCTCTATCTCCTTAAACCACCTCTACATCGCACTCTTGCTAATCTCTCAACTAAATATGGCCCTGTTTTCTCTCTTCAATTAAGTACCCGCCTTGTTGTAGCAATTTCCTCACCATCTGCTGCCGAAGAATGTTTCACAAAAAATGATATCGTTTTTGCTAATCGCCCTCGGACAATGACGGCAAAATTCATAGGCTATAACTCTACTACAGTCATTGGTTCTCCTTATGGTGATCACTGGCGCTACCTTCGCCGCCTCTGCGCACTTGAAATATTCTCCACTAATCGGCTCAACAATTTTCAGTCCATTACACAAGATGAAATCAAACTTTTAGTTCGAAGAGTGTTTCACAAATCTGGAGACAATTTTGTGACT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0017H17-A4Bcr/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E358544" ref_strand="+" ref_description="SGN-E358544 [cLHT-22-D15]">
      <seq>agtaactttgttgtatagtacttcactctctattttgggtgtgcttctacttgttaaacttgtttcatcaaaacgaagaaaacagaatctaccaccaagcccactacttaaacttccaatattaggccatctctatctccttaaaccacatctatatcgcactcttgctaatctctcaactaaatatggccctgttttctctcttcaattaggtacccgtcttgttgtagcaatttcctcaccatctgctgccgaagaatgtttcacaaaaaatgatatcgtttttgctaatcgccctcggacaatgacggcaaaattcataggctataactctactacagtcattggttctccttatggtgatcactggcgctaccttcgccgcctctgcgcacttgaaatattctccactaatcgtctcaacaattttcagtccattagacaagatgaaatcaaacttttagttcg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0017H17-A4Bcr/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02SLe0017H17.1" temp_strand="-" temp_description="C02SLe0017H17.1  AC215447.2 htgs_phase:3 submitted_to_sgn_as:C02SLe0017H17 sequenced_by:kribb upload_account_name:korea">
        <position start="47359" stop="46293"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="47059" g_stop="46592" g_length="468"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="468" r_length="468" r_score="0.964"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLe0017H17.1" gen_strand="-" ref_id="SGN-E358544" ref_strand="+">
        <total_alignment_score>0.964</total_alignment_score>
        <cumulative_length_of_scored_exons>468</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0017H17.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E358544" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="47059" e_stop="46592"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGTAACTTTGTTGTATAGTACTTCACTCTCTATTTTGTTTGTGCTTCTACTTGTTAAACTTGTTTCATCAAAACGAAGAAAACTGAATCTACCACCAAGCCCATTGCTTAAACTTCCAATATTAGGCCATCTCTATCTCCTTAAACCACCTCTATATCGCACTCTTGCTAATCTCTCAACAAAATATGGCCCTGTTTTCTCTCTTCAATTAGGTACCCGTCTTGTTGTAGCAATTTCCTCACCATCTGCTGCCGAAGAATGTTTCACCAAAAATGATATCGTTTTTGCTAATCGCCCTCGGACAATGACTGCAAAATTCATAGGCTATAACTCTACTACTGTCGTTGGTTCTCCTTATGGTGATCACTGGCGCTATCTTCGCCGCCTCTACGCACTTGAAATATTCTCCACTAATCGTCTCAACAATTTTCAGTCCACTAGACAAGATGAGATCAGACTTTTAGTTCA</genome_strand>
        <mrna_strand>AGTAACTTTGTTGTATAGTACTTCACTCTCTATTTTGGGTGTGCTTCTACTTGTTAAACTTGTTTCATCAAAACGAAGAAAACAGAATCTACCACCAAGCCCACTACTTAAACTTCCAATATTAGGCCATCTCTATCTCCTTAAACCACATCTATATCGCACTCTTGCTAATCTCTCAACTAAATATGGCCCTGTTTTCTCTCTTCAATTAGGTACCCGTCTTGTTGTAGCAATTTCCTCACCATCTGCTGCCGAAGAATGTTTCACAAAAAATGATATCGTTTTTGCTAATCGCCCTCGGACAATGACGGCAAAATTCATAGGCTATAACTCTACTACAGTCATTGGTTCTCCTTATGGTGATCACTGGCGCTACCTTCGCCGCCTCTGCGCACTTGAAATATTCTCCACTAATCGTCTCAACAATTTTCAGTCCATTAGACAAGATGAAATCAAACTTTTAGTTCG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0017H17-A4Bcr/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E354737" ref_strand="+" ref_description="SGN-E354737 [cLHT-5-L24]">
      <seq>gcaaataatggaagtaactttgttgtatagtacttcactctctattttgtttgtgcttctacttgttaaacttgtttcatcaaaacgaagaaaacagaatctaccaccaagcccactacttaaacttccaatattaggccatctctatctccttaaaccacatctatatcgcactcttgctaatctctcaactaaatatggccctgttttctctcttcaattaggtacccgtcttgttgtagcaatttcctcaccatctgctgccgaagaatgtttcacaaaaaatgatatcgtttttgctaatcgccctcggacaatgacggcaaaattcataggctataactctactacagtcattggttctccttatggtgatcactggcgctaccttcgccgcctctgcgcacttgaaatattctccactaatcgtctcaacaattttcagtccattagacaagatgaaatcaaacttttagttc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0017H17-A4Bcr/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02SLe0017H17.1" temp_strand="-" temp_description="C02SLe0017H17.1  AC215447.2 htgs_phase:3 submitted_to_sgn_as:C02SLe0017H17 sequenced_by:kribb upload_account_name:korea">
        <position start="47371" stop="46293"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="47071" g_stop="46593" g_length="479"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="479" r_length="479" r_score="0.971"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLe0017H17.1" gen_strand="-" ref_id="SGN-E354737" ref_strand="+">
        <total_alignment_score>0.971</total_alignment_score>
        <cumulative_length_of_scored_exons>479</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0017H17.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E354737" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="47071" e_stop="46593"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCAAATAATGGAAGTAACTTTGTTGTATAGTACTTCACTCTCTATTTTGTTTGTGCTTCTACTTGTTAAACTTGTTTCATCAAAACGAAGAAAACTGAATCTACCACCAAGCCCATTGCTTAAACTTCCAATATTAGGCCATCTCTATCTCCTTAAACCACCTCTATATCGCACTCTTGCTAATCTCTCAACAAAATATGGCCCTGTTTTCTCTCTTCAATTAGGTACCCGTCTTGTTGTAGCAATTTCCTCACCATCTGCTGCCGAAGAATGTTTCACCAAAAATGATATCGTTTTTGCTAATCGCCCTCGGACAATGACTGCAAAATTCATAGGCTATAACTCTACTACTGTCGTTGGTTCTCCTTATGGTGATCACTGGCGCTATCTTCGCCGCCTCTACGCACTTGAAATATTCTCCACTAATCGTCTCAACAATTTTCAGTCCACTAGACAAGATGAGATCAGACTTTTAGTTC</genome_strand>
        <mrna_strand>GCAAATAATGGAAGTAACTTTGTTGTATAGTACTTCACTCTCTATTTTGTTTGTGCTTCTACTTGTTAAACTTGTTTCATCAAAACGAAGAAAACAGAATCTACCACCAAGCCCACTACTTAAACTTCCAATATTAGGCCATCTCTATCTCCTTAAACCACATCTATATCGCACTCTTGCTAATCTCTCAACTAAATATGGCCCTGTTTTCTCTCTTCAATTAGGTACCCGTCTTGTTGTAGCAATTTCCTCACCATCTGCTGCCGAAGAATGTTTCACAAAAAATGATATCGTTTTTGCTAATCGCCCTCGGACAATGACGGCAAAATTCATAGGCTATAACTCTACTACAGTCATTGGTTCTCCTTATGGTGATCACTGGCGCTACCTTCGCCGCCTCTGCGCACTTGAAATATTCTCCACTAATCGTCTCAACAATTTTCAGTCCATTAGACAAGATGAAATCAAACTTTTAGTTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0017H17-A4Bcr/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E358675" ref_strand="+" ref_description="SGN-E358675 [cLHT-22-L1]">
      <seq>aataatggaagtaattttgttgtatagtacttcactctgtattgggtttgtgcttctacttgttaaacttgtttcatcaaaacgaagaaaactgaatctaccaccaagcccactacttaaacttccaatattaggccatctctatctccttaaaccacctctacatcgcactcttgctaatctctcaactaaatatggccctgttttctctcttcaattaggtacccgtcttgttgtagcaatttcctcaccatctgctgccgaagaatgtttcacaaaaaatgatatcgtttttgctaatcgccctcggacaatgacggcaaaattcataggctataactctactacagtcattggttctccttatggtgatcactggcgctaccttcgccgcctctgcgcacttgaaatattctccactaatcgtctcaacaattttcagtccattagacaagatgaaatcaaacttttagttc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0017H17-A4Bcr/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02SLe0017H17.1" temp_strand="-" temp_description="C02SLe0017H17.1  AC215447.2 htgs_phase:3 submitted_to_sgn_as:C02SLe0017H17 sequenced_by:kribb upload_account_name:korea">
        <position start="47368" stop="46293"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="47068" g_stop="46593" g_length="476"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="476" r_length="476" r_score="0.964"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLe0017H17.1" gen_strand="-" ref_id="SGN-E358675" ref_strand="+">
        <total_alignment_score>0.964</total_alignment_score>
        <cumulative_length_of_scored_exons>476</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0017H17.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E358675" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="47068" e_stop="46593"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AATAATGGAAGTAACTTTGTTGTATAGTACTTCACTCTCTATTTTGTTTGTGCTTCTACTTGTTAAACTTGTTTCATCAAAACGAAGAAAACTGAATCTACCACCAAGCCCATTGCTTAAACTTCCAATATTAGGCCATCTCTATCTCCTTAAACCACCTCTATATCGCACTCTTGCTAATCTCTCAACAAAATATGGCCCTGTTTTCTCTCTTCAATTAGGTACCCGTCTTGTTGTAGCAATTTCCTCACCATCTGCTGCCGAAGAATGTTTCACCAAAAATGATATCGTTTTTGCTAATCGCCCTCGGACAATGACTGCAAAATTCATAGGCTATAACTCTACTACTGTCGTTGGTTCTCCTTATGGTGATCACTGGCGCTATCTTCGCCGCCTCTACGCACTTGAAATATTCTCCACTAATCGTCTCAACAATTTTCAGTCCACTAGACAAGATGAGATCAGACTTTTAGTTC</genome_strand>
        <mrna_strand>AATAATGGAAGTAATTTTGTTGTATAGTACTTCACTCTGTATTGGGTTTGTGCTTCTACTTGTTAAACTTGTTTCATCAAAACGAAGAAAACTGAATCTACCACCAAGCCCACTACTTAAACTTCCAATATTAGGCCATCTCTATCTCCTTAAACCACCTCTACATCGCACTCTTGCTAATCTCTCAACTAAATATGGCCCTGTTTTCTCTCTTCAATTAGGTACCCGTCTTGTTGTAGCAATTTCCTCACCATCTGCTGCCGAAGAATGTTTCACAAAAAATGATATCGTTTTTGCTAATCGCCCTCGGACAATGACGGCAAAATTCATAGGCTATAACTCTACTACAGTCATTGGTTCTCCTTATGGTGATCACTGGCGCTACCTTCGCCGCCTCTGCGCACTTGAAATATTCTCCACTAATCGTCTCAACAATTTTCAGTCCATTAGACAAGATGAAATCAAACTTTTAGTTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0017H17-A4Bcr/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E358861" ref_strand="+" ref_description="SGN-E358861 [cLHT-24-P24]">
      <seq>gaagtaactttgttgtatagtacttcactctctattttgtgtgtgcttctacttgttaaacttgtttcatcaaaacgaagaaaactgaatctaccaccaagcccactacttaaacttccaatattaggccatctctatctccttaaaccacctctacatcgcactcttgctaatctctcaactaaatatggccctgttttctctcttcaattaggtacccgtcttgttgtagcaatttcctcaccatctgctgccgaagaatgtttcacaaaaaatgatatcgtttttgctaatcgccctcggacaatgacggcaaaattcataggctataactctactacagtcattggttctccttatggtgatcactggcgctaccttcgccgcctctgcgcacttgaaatattctccactaatcgtctcaacaattttcagtccattagacaagatgaaatcaaacttttagttc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0017H17-A4Bcr/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02SLe0017H17.1" temp_strand="-" temp_description="C02SLe0017H17.1  AC215447.2 htgs_phase:3 submitted_to_sgn_as:C02SLe0017H17 sequenced_by:kribb upload_account_name:korea">
        <position start="47361" stop="46293"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="47061" g_stop="46593" g_length="469"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="469" r_length="469" r_score="0.970"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLe0017H17.1" gen_strand="-" ref_id="SGN-E358861" ref_strand="+">
        <total_alignment_score>0.970</total_alignment_score>
        <cumulative_length_of_scored_exons>469</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0017H17.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E358861" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="47061" e_stop="46593"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAAGTAACTTTGTTGTATAGTACTTCACTCTCTATTTTGTTTGTGCTTCTACTTGTTAAACTTGTTTCATCAAAACGAAGAAAACTGAATCTACCACCAAGCCCATTGCTTAAACTTCCAATATTAGGCCATCTCTATCTCCTTAAACCACCTCTATATCGCACTCTTGCTAATCTCTCAACAAAATATGGCCCTGTTTTCTCTCTTCAATTAGGTACCCGTCTTGTTGTAGCAATTTCCTCACCATCTGCTGCCGAAGAATGTTTCACCAAAAATGATATCGTTTTTGCTAATCGCCCTCGGACAATGACTGCAAAATTCATAGGCTATAACTCTACTACTGTCGTTGGTTCTCCTTATGGTGATCACTGGCGCTATCTTCGCCGCCTCTACGCACTTGAAATATTCTCCACTAATCGTCTCAACAATTTTCAGTCCACTAGACAAGATGAGATCAGACTTTTAGTTC</genome_strand>
        <mrna_strand>GAAGTAACTTTGTTGTATAGTACTTCACTCTCTATTTTGTGTGTGCTTCTACTTGTTAAACTTGTTTCATCAAAACGAAGAAAACTGAATCTACCACCAAGCCCACTACTTAAACTTCCAATATTAGGCCATCTCTATCTCCTTAAACCACCTCTACATCGCACTCTTGCTAATCTCTCAACTAAATATGGCCCTGTTTTCTCTCTTCAATTAGGTACCCGTCTTGTTGTAGCAATTTCCTCACCATCTGCTGCCGAAGAATGTTTCACAAAAAATGATATCGTTTTTGCTAATCGCCCTCGGACAATGACGGCAAAATTCATAGGCTATAACTCTACTACAGTCATTGGTTCTCCTTATGGTGATCACTGGCGCTACCTTCGCCGCCTCTGCGCACTTGAAATATTCTCCACTAATCGTCTCAACAATTTTCAGTCCATTAGACAAGATGAAATCAAACTTTTAGTTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0017H17-A4Bcr/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E359506" ref_strand="+" ref_description="SGN-E359506 [cLHT-31-D20]">
      <seq>gagggaagtaacctttgttgtatagtacttcactctctattttgtttgtgcttctacttgttaaacttgtttcatcaaaacgaagaaaactgaatctaccaccaagcccactacttaaacttccaatattaggccatctctatctccttaaaccacctctacatcgcactcttgctaatctctcaactaaatatggccctgttttctctcttcaattaggtacccgtcttgttgtagcaatttcctcaccatctgctgccgaagaatgtttcacaaaaaatgatatcgtttttgctaatcgccctcggacaatgacggcaaaattcataggctataactctactacagtcattggttctccttatggtgatcactggcgctaccttcgccgcctctgcgcacttgaaatattctccactaatcgtctcaacaattttcagtccattagacaagatgaaatcaaactttta</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0017H17-A4Bcr/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02SLe0017H17.1" temp_strand="-" temp_description="C02SLe0017H17.1  AC215447.2 htgs_phase:3 submitted_to_sgn_as:C02SLe0017H17 sequenced_by:kribb upload_account_name:korea">
        <position start="47364" stop="46297"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="47065" g_stop="46597" g_length="469"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="470" r_length="470" r_score="0.964"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLe0017H17.1" gen_strand="-" ref_id="SGN-E359506" ref_strand="+">
        <total_alignment_score>0.964</total_alignment_score>
        <cumulative_length_of_scored_exons>469</cumulative_length_of_scored_exons>
        <coverage percentage="0.998" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0017H17.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E359506" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="47065" e_stop="46597"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AATGGAAGTAA-CTTTGTTGTATAGTACTTCACTCTCTATTTTGTTTGTGCTTCTACTTGTTAAACTTGTTTCATCAAAACGAAGAAAACTGAATCTACCACCAAGCCCATTGCTTAAACTTCCAATATTAGGCCATCTCTATCTCCTTAAACCACCTCTATATCGCACTCTTGCTAATCTCTCAACAAAATATGGCCCTGTTTTCTCTCTTCAATTAGGTACCCGTCTTGTTGTAGCAATTTCCTCACCATCTGCTGCCGAAGAATGTTTCACCAAAAATGATATCGTTTTTGCTAATCGCCCTCGGACAATGACTGCAAAATTCATAGGCTATAACTCTACTACTGTCGTTGGTTCTCCTTATGGTGATCACTGGCGCTATCTTCGCCGCCTCTACGCACTTGAAATATTCTCCACTAATCGTCTCAACAATTTTCAGTCCACTAGACAAGATGAGATCAGACTTTTA</genome_strand>
        <mrna_strand>GAGGGAAGTAACCTTTGTTGTATAGTACTTCACTCTCTATTTTGTTTGTGCTTCTACTTGTTAAACTTGTTTCATCAAAACGAAGAAAACTGAATCTACCACCAAGCCCACTACTTAAACTTCCAATATTAGGCCATCTCTATCTCCTTAAACCACCTCTACATCGCACTCTTGCTAATCTCTCAACTAAATATGGCCCTGTTTTCTCTCTTCAATTAGGTACCCGTCTTGTTGTAGCAATTTCCTCACCATCTGCTGCCGAAGAATGTTTCACAAAAAATGATATCGTTTTTGCTAATCGCCCTCGGACAATGACGGCAAAATTCATAGGCTATAACTCTACTACAGTCATTGGTTCTCCTTATGGTGATCACTGGCGCTACCTTCGCCGCCTCTGCGCACTTGAAATATTCTCCACTAATCGTCTCAACAATTTTCAGTCCATTAGACAAGATGAAATCAAACTTTTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0017H17-A4Bcr/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E357990" ref_strand="+" ref_description="SGN-E357990 [cLHT-32-F5]">
      <seq>aataatggaagtaactttgttgtatagtacttcactctcgattttgtttgtgcttctacttgttaaacttgtttcatcaaaacgaagaaaacagaatctaccaccaagcccactacttaaacttccaatattaggccatctctatctccttaaaccacatctatatcgcactcttgctaatctctcaactaaatatggccctgttttctctcttcaattaggtacccgtcttgttgtagcaatttcctcaccatctgctgccgaagaatgtttcacaaaaaatgatatcgtttttgctaatcgccctcggacaatgacggcaaaattcataggctataactctactacagtcattggttctccttatggtgatcactggcgctaccttcgccgcctctgcgcacttgaaatattctccactaatcgtctcaacaattttcagtccattagacaagat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0017H17-A4Bcr/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02SLe0017H17.1" temp_strand="-" temp_description="C02SLe0017H17.1  AC215447.2 htgs_phase:3 submitted_to_sgn_as:C02SLe0017H17 sequenced_by:kribb upload_account_name:korea">
        <position start="47368" stop="46312"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="47068" g_stop="46612" g_length="457"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="457" r_length="457" r_score="0.972"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLe0017H17.1" gen_strand="-" ref_id="SGN-E357990" ref_strand="+">
        <total_alignment_score>0.972</total_alignment_score>
        <cumulative_length_of_scored_exons>457</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0017H17.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E357990" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="47068" e_stop="46612"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AATAATGGAAGTAACTTTGTTGTATAGTACTTCACTCTCTATTTTGTTTGTGCTTCTACTTGTTAAACTTGTTTCATCAAAACGAAGAAAACTGAATCTACCACCAAGCCCATTGCTTAAACTTCCAATATTAGGCCATCTCTATCTCCTTAAACCACCTCTATATCGCACTCTTGCTAATCTCTCAACAAAATATGGCCCTGTTTTCTCTCTTCAATTAGGTACCCGTCTTGTTGTAGCAATTTCCTCACCATCTGCTGCCGAAGAATGTTTCACCAAAAATGATATCGTTTTTGCTAATCGCCCTCGGACAATGACTGCAAAATTCATAGGCTATAACTCTACTACTGTCGTTGGTTCTCCTTATGGTGATCACTGGCGCTATCTTCGCCGCCTCTACGCACTTGAAATATTCTCCACTAATCGTCTCAACAATTTTCAGTCCACTAGACAAGAT</genome_strand>
        <mrna_strand>AATAATGGAAGTAACTTTGTTGTATAGTACTTCACTCTCGATTTTGTTTGTGCTTCTACTTGTTAAACTTGTTTCATCAAAACGAAGAAAACAGAATCTACCACCAAGCCCACTACTTAAACTTCCAATATTAGGCCATCTCTATCTCCTTAAACCACATCTATATCGCACTCTTGCTAATCTCTCAACTAAATATGGCCCTGTTTTCTCTCTTCAATTAGGTACCCGTCTTGTTGTAGCAATTTCCTCACCATCTGCTGCCGAAGAATGTTTCACAAAAAATGATATCGTTTTTGCTAATCGCCCTCGGACAATGACGGCAAAATTCATAGGCTATAACTCTACTACAGTCATTGGTTCTCCTTATGGTGATCACTGGCGCTACCTTCGCCGCCTCTGCGCACTTGAAATATTCTCCACTAATCGTCTCAACAATTTTCAGTCCATTAGACAAGAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0017H17-A4Bcr/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E355617" ref_strand="+" ref_description="SGN-E355617 [cLHT-1-I24]">
      <seq>gaagtaactttgttgtatagtacttcactctctattttgtttgtgcttctacttgttaaacttgtttcatcaaaacgaagaaaacagaatctaccaccaagcccactacttaaacttccaatattaggccatctctatctccttaaaccacatctatatcgcactcttgctaatctctcaactaaatatggccctgttttctctcttcaattaggtacccgtcttgttgtagcaatttcctcaccatctgctgccgaagaatgtttcacaaaaaatgatatcgtttttgctaatcgccctcggacaatgacggcaaaattcataggctataactctactacagtcattggttctccttatggtgatcactggcgctaccttcgccgcctctgcgcacttgaaatattctccactaatcgtctcaacaattttcagtc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0017H17-A4Bcr/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02SLe0017H17.1" temp_strand="-" temp_description="C02SLe0017H17.1  AC215447.2 htgs_phase:3 submitted_to_sgn_as:C02SLe0017H17 sequenced_by:kribb upload_account_name:korea">
        <position start="47361" stop="46325"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="47061" g_stop="46625" g_length="437"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="437" r_length="437" r_score="0.975"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLe0017H17.1" gen_strand="-" ref_id="SGN-E355617" ref_strand="+">
        <total_alignment_score>0.975</total_alignment_score>
        <cumulative_length_of_scored_exons>437</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0017H17.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E355617" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="47061" e_stop="46625"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAAGTAACTTTGTTGTATAGTACTTCACTCTCTATTTTGTTTGTGCTTCTACTTGTTAAACTTGTTTCATCAAAACGAAGAAAACTGAATCTACCACCAAGCCCATTGCTTAAACTTCCAATATTAGGCCATCTCTATCTCCTTAAACCACCTCTATATCGCACTCTTGCTAATCTCTCAACAAAATATGGCCCTGTTTTCTCTCTTCAATTAGGTACCCGTCTTGTTGTAGCAATTTCCTCACCATCTGCTGCCGAAGAATGTTTCACCAAAAATGATATCGTTTTTGCTAATCGCCCTCGGACAATGACTGCAAAATTCATAGGCTATAACTCTACTACTGTCGTTGGTTCTCCTTATGGTGATCACTGGCGCTATCTTCGCCGCCTCTACGCACTTGAAATATTCTCCACTAATCGTCTCAACAATTTTCAGTC</genome_strand>
        <mrna_strand>GAAGTAACTTTGTTGTATAGTACTTCACTCTCTATTTTGTTTGTGCTTCTACTTGTTAAACTTGTTTCATCAAAACGAAGAAAACAGAATCTACCACCAAGCCCACTACTTAAACTTCCAATATTAGGCCATCTCTATCTCCTTAAACCACATCTATATCGCACTCTTGCTAATCTCTCAACTAAATATGGCCCTGTTTTCTCTCTTCAATTAGGTACCCGTCTTGTTGTAGCAATTTCCTCACCATCTGCTGCCGAAGAATGTTTCACAAAAAATGATATCGTTTTTGCTAATCGCCCTCGGACAATGACGGCAAAATTCATAGGCTATAACTCTACTACAGTCATTGGTTCTCCTTATGGTGATCACTGGCGCTACCTTCGCCGCCTCTGCGCACTTGAAATATTCTCCACTAATCGTCTCAACAATTTTCAGTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0017H17-A4Bcr/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E358247" ref_strand="+" ref_description="SGN-E358247 [cLHT-23-P4]">
      <seq>gtaactttgttgtatagtacttcactctctattttgtttgtgcttctacttgttaaacttgtttcatcaaaacgaagaaaactgaatctaccaccaagcccactacttaaacttccaatattaggccatctctatctccttaaaccacctctacatcgcactcttgctaatctctcaactaaatatggccctgttttctctcttcaattaggtacccgtcttgttgtagcaatttcctcaccatctgctgccgaagaatgtttcacaaaaaatgatatcgtttttgctaatcgccctcggacaatgacggcaaaattcataggctataactctactacagtcattggttctccttatggtgatcactggcgctaccttcgccgcctctgcgcacttgaaatattctccactaatcgtctcaacaattttcagtc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0017H17-A4Bcr/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02SLe0017H17.1" temp_strand="-" temp_description="C02SLe0017H17.1  AC215447.2 htgs_phase:3 submitted_to_sgn_as:C02SLe0017H17 sequenced_by:kribb upload_account_name:korea">
        <position start="47358" stop="46325"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="47058" g_stop="46625" g_length="434"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="434" r_length="434" r_score="0.977"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLe0017H17.1" gen_strand="-" ref_id="SGN-E358247" ref_strand="+">
        <total_alignment_score>0.977</total_alignment_score>
        <cumulative_length_of_scored_exons>434</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0017H17.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E358247" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="47058" e_stop="46625"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTAACTTTGTTGTATAGTACTTCACTCTCTATTTTGTTTGTGCTTCTACTTGTTAAACTTGTTTCATCAAAACGAAGAAAACTGAATCTACCACCAAGCCCATTGCTTAAACTTCCAATATTAGGCCATCTCTATCTCCTTAAACCACCTCTATATCGCACTCTTGCTAATCTCTCAACAAAATATGGCCCTGTTTTCTCTCTTCAATTAGGTACCCGTCTTGTTGTAGCAATTTCCTCACCATCTGCTGCCGAAGAATGTTTCACCAAAAATGATATCGTTTTTGCTAATCGCCCTCGGACAATGACTGCAAAATTCATAGGCTATAACTCTACTACTGTCGTTGGTTCTCCTTATGGTGATCACTGGCGCTATCTTCGCCGCCTCTACGCACTTGAAATATTCTCCACTAATCGTCTCAACAATTTTCAGTC</genome_strand>
        <mrna_strand>GTAACTTTGTTGTATAGTACTTCACTCTCTATTTTGTTTGTGCTTCTACTTGTTAAACTTGTTTCATCAAAACGAAGAAAACTGAATCTACCACCAAGCCCACTACTTAAACTTCCAATATTAGGCCATCTCTATCTCCTTAAACCACCTCTACATCGCACTCTTGCTAATCTCTCAACTAAATATGGCCCTGTTTTCTCTCTTCAATTAGGTACCCGTCTTGTTGTAGCAATTTCCTCACCATCTGCTGCCGAAGAATGTTTCACAAAAAATGATATCGTTTTTGCTAATCGCCCTCGGACAATGACGGCAAAATTCATAGGCTATAACTCTACTACAGTCATTGGTTCTCCTTATGGTGATCACTGGCGCTACCTTCGCCGCCTCTGCGCACTTGAAATATTCTCCACTAATCGTCTCAACAATTTTCAGTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0017H17-A4Bcr/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E354670" ref_strand="+" ref_description="SGN-E354670 [cLHT-5-B9]">
      <seq>taactgtgtcgtatagtacttcactctctattttgtttgtgctactacttgttaaacttgtttcatcaaaacgaagaaaacagaatctaccaccaagcccactacttaaacttccaatattaggccatctctatctccttaaaccacatctatatcgcactcttgctaatctctcaactaaatatggccctgttttctctcttcaattaggtacccgtcttgttgtagcaatttcctcaccatctgctgccgaagaatgtttcacaaaaaatgatatcgtttttgctaatcgccctcggacaatgacggcaaaattcataggctataactctactacagtcattggttctccttatggtgatcactggcgctaccttc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0017H17-A4Bcr/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02SLe0017H17.1" temp_strand="-" temp_description="C02SLe0017H17.1  AC215447.2 htgs_phase:3 submitted_to_sgn_as:C02SLe0017H17 sequenced_by:kribb upload_account_name:korea">
        <position start="47357" stop="46380"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="47057" g_stop="46680" g_length="378"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="378" r_length="378" r_score="0.966"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLe0017H17.1" gen_strand="-" ref_id="SGN-E354670" ref_strand="+">
        <total_alignment_score>0.966</total_alignment_score>
        <cumulative_length_of_scored_exons>378</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0017H17.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E354670" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="47057" e_stop="46680"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TAACTTTGTTGTATAGTACTTCACTCTCTATTTTGTTTGTGCTTCTACTTGTTAAACTTGTTTCATCAAAACGAAGAAAACTGAATCTACCACCAAGCCCATTGCTTAAACTTCCAATATTAGGCCATCTCTATCTCCTTAAACCACCTCTATATCGCACTCTTGCTAATCTCTCAACAAAATATGGCCCTGTTTTCTCTCTTCAATTAGGTACCCGTCTTGTTGTAGCAATTTCCTCACCATCTGCTGCCGAAGAATGTTTCACCAAAAATGATATCGTTTTTGCTAATCGCCCTCGGACAATGACTGCAAAATTCATAGGCTATAACTCTACTACTGTCGTTGGTTCTCCTTATGGTGATCACTGGCGCTATCTTC</genome_strand>
        <mrna_strand>TAACTGTGTCGTATAGTACTTCACTCTCTATTTTGTTTGTGCTACTACTTGTTAAACTTGTTTCATCAAAACGAAGAAAACAGAATCTACCACCAAGCCCACTACTTAAACTTCCAATATTAGGCCATCTCTATCTCCTTAAACCACATCTATATCGCACTCTTGCTAATCTCTCAACTAAATATGGCCCTGTTTTCTCTCTTCAATTAGGTACCCGTCTTGTTGTAGCAATTTCCTCACCATCTGCTGCCGAAGAATGTTTCACAAAAAATGATATCGTTTTTGCTAATCGCCCTCGGACAATGACGGCAAAATTCATAGGCTATAACTCTACTACAGTCATTGGTTCTCCTTATGGTGATCACTGGCGCTACCTTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0017H17-A4Bcr/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E355803" ref_strand="+" ref_description="SGN-E355803 [cLHT-12-B10]">
      <seq>ctcgtgcgcacgaggggcaaataatggaagtaactttgttgtatagtacttcactctctattttgtttgtgcttctacttgttaaacttgtttcatcaaaacgaagaaaacagaatctaccaccaagcccactacttaaacttccaatattaggccatctctatctccttaaaccacatctatatcgcactcttgctaatctctcaactaaatatggccctgttttctctcttcaattaggtacccgtcttgttgtagcaatttcctcaccatctgctgccgaagaatgtttcacaaaaaatgatatcgtttttgctaatcgccctcggacaatgacggcaaaattcataggctataactctactacagtcattggttctcctta</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0017H17-A4Bcr/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02SLe0017H17.1" temp_strand="-" temp_description="C02SLe0017H17.1  AC215447.2 htgs_phase:3 submitted_to_sgn_as:C02SLe0017H17 sequenced_by:kribb upload_account_name:korea">
        <position start="47371" stop="46403"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="47071" g_stop="46703" g_length="369"/>
          <reference_exon_boundary r_type="cDNA" r_start="17" r_stop="385" r_length="369" r_score="0.976"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLe0017H17.1" gen_strand="-" ref_id="SGN-E355803" ref_strand="+">
        <total_alignment_score>0.976</total_alignment_score>
        <cumulative_length_of_scored_exons>369</cumulative_length_of_scored_exons>
        <coverage percentage="0.958" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0017H17.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E355803" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="47071" e_stop="46703"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCAAATAATGGAAGTAACTTTGTTGTATAGTACTTCACTCTCTATTTTGTTTGTGCTTCTACTTGTTAAACTTGTTTCATCAAAACGAAGAAAACTGAATCTACCACCAAGCCCATTGCTTAAACTTCCAATATTAGGCCATCTCTATCTCCTTAAACCACCTCTATATCGCACTCTTGCTAATCTCTCAACAAAATATGGCCCTGTTTTCTCTCTTCAATTAGGTACCCGTCTTGTTGTAGCAATTTCCTCACCATCTGCTGCCGAAGAATGTTTCACCAAAAATGATATCGTTTTTGCTAATCGCCCTCGGACAATGACTGCAAAATTCATAGGCTATAACTCTACTACTGTCGTTGGTTCTCCTTA</genome_strand>
        <mrna_strand>GCAAATAATGGAAGTAACTTTGTTGTATAGTACTTCACTCTCTATTTTGTTTGTGCTTCTACTTGTTAAACTTGTTTCATCAAAACGAAGAAAACAGAATCTACCACCAAGCCCACTACTTAAACTTCCAATATTAGGCCATCTCTATCTCCTTAAACCACATCTATATCGCACTCTTGCTAATCTCTCAACTAAATATGGCCCTGTTTTCTCTCTTCAATTAGGTACCCGTCTTGTTGTAGCAATTTCCTCACCATCTGCTGCCGAAGAATGTTTCACAAAAAATGATATCGTTTTTGCTAATCGCCCTCGGACAATGACGGCAAAATTCATAGGCTATAACTCTACTACAGTCATTGGTTCTCCTTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0017H17-A4Bcr/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E355565" ref_strand="+" ref_description="SGN-E355565 [cLHT-19-C24]">
      <seq>caaataatggaagtaactttgttgtatagtacttcactctctattttgtttgtgcttgtacttgttaaacttgtttcatcaaaacgaagaaaacagaatctaccaccaagcccactacttaaacttccaatattaggccatctctatctccttaaaccacatctatatcgcactcttgctaatctctcaactaaatatggccctgttttctctcttcaattaggtacccgtcttggtgtagcaattt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0017H17-A4Bcr/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02SLe0017H17.1" temp_strand="-" temp_description="C02SLe0017H17.1  AC215447.2 htgs_phase:3 submitted_to_sgn_as:C02SLe0017H17 sequenced_by:kribb upload_account_name:korea">
        <position start="47370" stop="46524"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="47070" g_stop="46824" g_length="247"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="247" r_length="247" r_score="0.972"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLe0017H17.1" gen_strand="-" ref_id="SGN-E355565" ref_strand="+">
        <total_alignment_score>0.972</total_alignment_score>
        <cumulative_length_of_scored_exons>247</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0017H17.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E355565" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="47070" e_stop="46824"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAAATAATGGAAGTAACTTTGTTGTATAGTACTTCACTCTCTATTTTGTTTGTGCTTCTACTTGTTAAACTTGTTTCATCAAAACGAAGAAAACTGAATCTACCACCAAGCCCATTGCTTAAACTTCCAATATTAGGCCATCTCTATCTCCTTAAACCACCTCTATATCGCACTCTTGCTAATCTCTCAACAAAATATGGCCCTGTTTTCTCTCTTCAATTAGGTACCCGTCTTGTTGTAGCAATTT</genome_strand>
        <mrna_strand>CAAATAATGGAAGTAACTTTGTTGTATAGTACTTCACTCTCTATTTTGTTTGTGCTTGTACTTGTTAAACTTGTTTCATCAAAACGAAGAAAACAGAATCTACCACCAAGCCCACTACTTAAACTTCCAATATTAGGCCATCTCTATCTCCTTAAACCACATCTATATCGCACTCTTGCTAATCTCTCAACTAAATATGGCCCTGTTTTCTCTCTTCAATTAGGTACCCGTCTTGGTGTAGCAATTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0017H17-A4Bcr/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E256888" ref_strand="-" ref_description="SGN-E256888 [cLEG-40-N10]">
      <seq>tggttttcagaatccagcttaggttgctggatgatggagagcttggattttatacatgtatttccagatatttttagagatttgtgttgagatcagagcaaaaaagtgaggtcaattgttgtttatttgcagatggcaaagaggatcttttcacacgaagtgtttggttgcaaactcaagcatgaggtttgtactctgttttaaactatagaactgtttgtatgctgggttatcgttcaatgccctctgtttatataacattctacatttgatgtgtatagacaagagaagatatggttcttaggttcaaggacttgattgtattagtaaatgctccgcaacattcttccagtgagattgaactttttgacctcaatttagtatgtgattacgttcgttatgtttgtacttttgataattgttagggagaattatggagagccgttgaagtacactcatggaccatggtcattgttcagatgtttggtgtagaaatcttggtgtgcaagctgctaaatccaatatagaaactactccggaatatgttatgttaatatcaactatcaagcctagcaatttttgaccttattctaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0017H17-A4Bcr/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02SLe0017H17.1" temp_strand="-" temp_description="C02SLe0017H17.1  AC215447.2 htgs_phase:3 submitted_to_sgn_as:C02SLe0017H17 sequenced_by:kribb upload_account_name:korea">
        <position start="55810" stop="54375"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="55510" g_stop="55379" g_length="132"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="132" r_length="132" r_score="0.992"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="55378" i_stop="55138" i_length="241">
            <donor d_prob="0.904" d_score="0.98"/>
            <acceptor a_prob="0.935" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="55137" g_stop="54673" g_length="465"/>
          <reference_exon_boundary r_type="cDNA" r_start="133" r_stop="597" r_length="465" r_score="0.985"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLe0017H17.1" gen_strand="-" ref_id="SGN-E256888" ref_strand="-">
        <total_alignment_score>0.987</total_alignment_score>
        <cumulative_length_of_scored_exons>597</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0017H17.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E256888" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="55510" e_stop="55379"/>
          <exon e_start="55137" e_stop="54673"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGGTTTTCAGAATCCAGCTTAGGTTGCTGGATGATGGAGAGCTTGGATTTTATACATGTATTTCCAGATATTTTTAGAGATTTGTGTTGAGATCAGAGGAAAAAAGTGAGGTCAATTGTTGTTTATTTGCAGGTAAGATATATATTGATCAGATTTTGGCAATTCTTGTTTCAGTTCCGTGTACTAAAATAACGTTTCATATAGATCAACATTTCAGCTTGTTACTTTCTACCTAATGCAAACAAGTTGTTTGGTAGATAGTAAGGAGCTAAGTTATTGCTGCATTTTATTCTTTTCCGCTGTTGCACTGAAAGTAATGTTTGCACTATCTGCTTGCTTAGAGTGTGATTATAGATTTGGTATAACATTATAGATGGCAAAGAGGATCTTTTCACACGAAGTGTTTGGTTGCAAACTCAAGCATGAGGTTTGTACTCTGTTTTAAACTATAGAACTGTTTGTATGCTGGGTTATCGTTCAATGCCCTCTGTTTATATAACATTCTACATTTGATGTGTATAGACAAGAGAAGATATGGTTCTTAGGTTCAAGGACTTGATTGTATTAGTAAATGCTCCGCAACATTCTTCCAGTGAGATTGAACTTTTTGACCTCAATTTAGTATGTGATTACGTTCGTTATGTTTGTACTTTTGATAATTGTTAGGGAGAATTATGGAGAGCCGTTGAAGTACACTCATGGACCATGGTCATTGTTCAGATGTTTGGTGTAGAAATCTTGGTGTGCAAGCTGCTAAATCCAATATAGAAACTACTTGGGAATATGTTATGCTAATATCAACTATCAAGCCTAGCAATTTTTGACCTTATTTTATACT</genome_strand>
        <mrna_strand>TGGTTTTCAGAATCCAGCTTAGGTTGCTGGATGATGGAGAGCTTGGATTTTATACATGTATTTCCAGATATTTTTAGAGATTTGTGTTGAGATCAGAGCAAAAAAGTGAGGTCAATTGTTGTTTATTTGCAG.................................................................................................................................................................................................................................................ATGGCAAAGAGGATCTTTTCACACGAAGTGTTTGGTTGCAAACTCAAGCATGAGGTTTGTACTCTGTTTTAAACTATAGAACTGTTTGTATGCTGGGTTATCGTTCAATGCCCTCTGTTTATATAACATTCTACATTTGATGTGTATAGACAAGAGAAGATATGGTTCTTAGGTTCAAGGACTTGATTGTATTAGTAAATGCTCCGCAACATTCTTCCAGTGAGATTGAACTTTTTGACCTCAATTTAGTATGTGATTACGTTCGTTATGTTTGTACTTTTGATAATTGTTAGGGAGAATTATGGAGAGCCGTTGAAGTACACTCATGGACCATGGTCATTGTTCAGATGTTTGGTGTAGAAATCTTGGTGTGCAAGCTGCTAAATCCAATATAGAAACTACTCCGGAATATGTTATGTTAATATCAACTATCAAGCCTAGCAATTTTTGACCTTATTCTAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0017H17-A4Bcr/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E539101" ref_strand="+" ref_description="SGN-E539101 [TUS-58-K24]">
      <seq>ttacagcccaaaggggacagcttgactcggcggtcagtttttgattgcatggtggctggttcagtaccggttttcttctggaggcgaacggcttacactcagtaccagtggtttttgccggaagacccggggagttattccgtgtttatagacccggaagcagtgagaaatgggacagcttccattaaggaaattttgatgagttacagtaaagatcaagtaaggaaaatgagggaaaaagttgtagagacaattccaagaatagtgtatgcaaggccaagtggaggtcttgggagtgtcaaggatgcatttgaaattgcaatcgaaggagtattgaagagggtcaaggacgaaaacgaatggaaggaatacgtggatatgggcagttgaagatgatgttgggagatttgatgaatgttgtaaagtatataaatctttcccttaatattcagctatacatactgttataaatacagggacaaatttgaagccagacgggtaattctatatggctggtgatatgattcttggttttcagaatccagcttaggttgctggatgatggagagcttggattttatacatgtatttccagatatttttagagatttgtgttgagatcagaggaaaaaagtgaggtcaattgttgtttatttgcaggtaagatatatattgatcagattttggcaattcttgtttcagttccgtgtactaaaataacgtttcatatagatcaacatttcagcttgttactttctacctaatgcaaacaagttgtttggtagatagtaaggagctaagttattgctgaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0017H17-A4Bcr/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02SLe0017H17.1" temp_strand="-" temp_description="C02SLe0017H17.1  AC215447.2 htgs_phase:3 submitted_to_sgn_as:C02SLe0017H17 sequenced_by:kribb upload_account_name:korea">
        <position start="56338" stop="54927"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="56038" g_stop="55225" g_length="814"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="814" r_length="814" r_score="0.996"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLe0017H17.1" gen_strand="-" ref_id="SGN-E539101" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>814</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0017H17.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E539101" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="56038" e_stop="55225"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTACAGCCCAAAGGGGACAGCTTGACTCGGCGGTCAGTTTTTGATTGCATGGTGGCTGGTTCAGTACCGGTTTTCTTCTGGAGGCGAACGGCTTACACTCAGTACCAGTGGTTTTTGCCGGAAGACCCGGGGAGTTATTCCGTGTTTATAGACCCGGAAGCAGTGAGAAATGGGACAGCTTCCATTAAGGAAATTTTGATGAGTTACAGTAAAGATCAAGTAAGGAAAATGAGGGAAAAAGTTGTAGAGACAATTCCAAGAATAGTGTATGCAAGGCCAAGTGGAGGTCTTGGGAGTGTCAAGGATGCATTTGAAATTGCAATCGAAGGAGTATTGAAGAGGGTCAAGGACGAAAACGAATGGAAGGAATACGTGGATATGGGCAGTTGAAGATGATGTTGGGAGATTTGATGAATGTTGTAAAGTATATAAATCTTTCCCTTAATATTCAGCTATACATACTGTTATAAATACAGGGACAAATTTGAAGCCAGACGGGTAATTCTATATGGCTGGTGATATGATTCTTGGTTTTCAGAATCCAGCTTAGGTTGCTGGATGATGGAGAGCTTGGATTTTATACATGTATTTCCAGATATTTTTAGAGATTTGTGTTGAGATCAGAGGAAAAAAGTGAGGTCAATTGTTGTTTATTTGCAGGTAAGATATATATTGATCAGATTTTGGCAATTCTTGTTTCAGTTCCGTGTACTAAAATAACGTTTCATATAGATCAACATTTCAGCTTGTTACTTTCTACCTAATGCAAACAAGTTGTTTGGTAGATAGTAAGGAGCTAAGTTATTGCTGCATT</genome_strand>
        <mrna_strand>TTACAGCCCAAAGGGGACAGCTTGACTCGGCGGTCAGTTTTTGATTGCATGGTGGCTGGTTCAGTACCGGTTTTCTTCTGGAGGCGAACGGCTTACACTCAGTACCAGTGGTTTTTGCCGGAAGACCCGGGGAGTTATTCCGTGTTTATAGACCCGGAAGCAGTGAGAAATGGGACAGCTTCCATTAAGGAAATTTTGATGAGTTACAGTAAAGATCAAGTAAGGAAAATGAGGGAAAAAGTTGTAGAGACAATTCCAAGAATAGTGTATGCAAGGCCAAGTGGAGGTCTTGGGAGTGTCAAGGATGCATTTGAAATTGCAATCGAAGGAGTATTGAAGAGGGTCAAGGACGAAAACGAATGGAAGGAATACGTGGATATGGGCAGTTGAAGATGATGTTGGGAGATTTGATGAATGTTGTAAAGTATATAAATCTTTCCCTTAATATTCAGCTATACATACTGTTATAAATACAGGGACAAATTTGAAGCCAGACGGGTAATTCTATATGGCTGGTGATATGATTCTTGGTTTTCAGAATCCAGCTTAGGTTGCTGGATGATGGAGAGCTTGGATTTTATACATGTATTTCCAGATATTTTTAGAGATTTGTGTTGAGATCAGAGGAAAAAAGTGAGGTCAATTGTTGTTTATTTGCAGGTAAGATATATATTGATCAGATTTTGGCAATTCTTGTTTCAGTTCCGTGTACTAAAATAACGTTTCATATAGATCAACATTTCAGCTTGTTACTTTCTACCTAATGCAAACAAGTTGTTTGGTAGATAGTAAGGAGCTAAGTTATTGCTGAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0017H17-A4Bcr/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E699757" ref_strand="+" ref_description="SGN-E699757 [FA11AE06]">
      <seq>gcgggatttccggcgattaggtgacccagaaaaactctggggatcctcttttctaaatcgaccgcagatgcagaatgttacgcgattcacaatcgagaaggctccatgggatgcaaacgatatcagtgtaccttaccctaccggattccaccctcattccgagaaagaactccgagaatggcaaaagtttgcactttcatataaccgcaccagtctattcaccttcataggggcggcgcgtggggatatcgatagtgatttcagatcgaggttaatgagttactgtaggaacgagtcagactcgtgccgagttgtggactgtgccgtgattccctgctctaacggttcatcagaaatccaaaaagcacttctgagctcagacttctgtttacagcccaaaggggacagcttgactcggcggtcagtttttgattgcatggtggctggttcagtaccggttttcttctggaggcgaacggcttacactcagtaccagtggtttttgccggaagacccggggagttattccgtgtttatagacccggaagcagtgagaaatgggacagcttccattaaggaaattttgatgagttacagtaaagatcaagtaaggaaaatgagggaaaaagttgtagagacaattccaagaatagtgtatgcaaggccaagtggaggtcttgggagtgtcaaggatgcatttgaaattgcaatcgaaggagtattgaagagggtcaaggacgaaaacgaatggaaggaatacgtggatatgggcagttgaagatgatgttgggagatctgatgaatgttgtaaagtatataaatctttccccttaatattcagctata</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0017H17-A4Bcr/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02SLe0017H17.1" temp_strand="-" temp_description="C02SLe0017H17.1  AC215447.2 htgs_phase:3 submitted_to_sgn_as:C02SLe0017H17 sequenced_by:kribb upload_account_name:korea">
        <position start="56726" stop="55282"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="56426" g_stop="55582" g_length="845"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="846" r_length="846" r_score="0.995"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLe0017H17.1" gen_strand="-" ref_id="SGN-E699757" ref_strand="+">
        <total_alignment_score>0.995</total_alignment_score>
        <cumulative_length_of_scored_exons>845</cumulative_length_of_scored_exons>
        <coverage percentage="0.999" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0017H17.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E699757" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="56426" e_stop="55582"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTGGGATTTCCGGCGATTAGGTGACCCAGAAAAACTCTGGGGATCCTCTTTTCTAAATCGACCGCAGATGCAGAATGTTACGCGATTCACAATCGAGAAGGCTCCATGGGATGCAAACGATATCAGTGTACCTTACCCTACCGGATTCCACCCTCATTCCGAGAAAGAACTCCGAGAATGGCAAAAGTTTGCACTTTCATATAACCGCACCAGTCTATTCACCTTCATAGGGGCGGCGCGTGGGGATATCGATAGTGATTTCAGATCGAGGTTAATGAGTTACTGTAGGAACGAGTCAGACTCGTGCCGAGTTGTGGACTGTGCCGTGATTCCCTGCTCTAACGGTTCATCAGAAATCCAAAAAGCACTTCTGAGCTCAGACTTCTGTTTACAGCCCAAAGGGGACAGCTTGACTCGGCGGTCAGTTTTTGATTGCATGGTGGCTGGTTCAGTACCGGTTTTCTTCTGGAGGCGAACGGCTTACACTCAGTACCAGTGGTTTTTGCCGGAAGACCCGGGGAGTTATTCCGTGTTTATAGACCCGGAAGCAGTGAGAAATGGGACAGCTTCCATTAAGGAAATTTTGATGAGTTACAGTAAAGATCAAGTAAGGAAAATGAGGGAAAAAGTTGTAGAGACAATTCCAAGAATAGTGTATGCAAGGCCAAGTGGAGGTCTTGGGAGTGTCAAGGATGCATTTGAAATTGCAATCGAAGGAGTATTGAAGAGGGTCAAGGACGAAAACGAATGGAAGGAATACGTGGATATGGGCAGTTGAAGATGATGTTGGGAGATTTGATGAATGTTGTAAAGTATATAAATCTTT-CCCTTAATATTCAGCTATA</genome_strand>
        <mrna_strand>GCGGGATTTCCGGCGATTAGGTGACCCAGAAAAACTCTGGGGATCCTCTTTTCTAAATCGACCGCAGATGCAGAATGTTACGCGATTCACAATCGAGAAGGCTCCATGGGATGCAAACGATATCAGTGTACCTTACCCTACCGGATTCCACCCTCATTCCGAGAAAGAACTCCGAGAATGGCAAAAGTTTGCACTTTCATATAACCGCACCAGTCTATTCACCTTCATAGGGGCGGCGCGTGGGGATATCGATAGTGATTTCAGATCGAGGTTAATGAGTTACTGTAGGAACGAGTCAGACTCGTGCCGAGTTGTGGACTGTGCCGTGATTCCCTGCTCTAACGGTTCATCAGAAATCCAAAAAGCACTTCTGAGCTCAGACTTCTGTTTACAGCCCAAAGGGGACAGCTTGACTCGGCGGTCAGTTTTTGATTGCATGGTGGCTGGTTCAGTACCGGTTTTCTTCTGGAGGCGAACGGCTTACACTCAGTACCAGTGGTTTTTGCCGGAAGACCCGGGGAGTTATTCCGTGTTTATAGACCCGGAAGCAGTGAGAAATGGGACAGCTTCCATTAAGGAAATTTTGATGAGTTACAGTAAAGATCAAGTAAGGAAAATGAGGGAAAAAGTTGTAGAGACAATTCCAAGAATAGTGTATGCAAGGCCAAGTGGAGGTCTTGGGAGTGTCAAGGATGCATTTGAAATTGCAATCGAAGGAGTATTGAAGAGGGTCAAGGACGAAAACGAATGGAAGGAATACGTGGATATGGGCAGTTGAAGATGATGTTGGGAGATCTGATGAATGTTGTAAAGTATATAAATCTTTCCCCTTAATATTCAGCTATA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0017H17-A4Bcr/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E281011" ref_strand="+" ref_description="SGN-E281011 [cLER-7-H19]">
      <seq>tacagcccaaaggggacagcttgactcggcggtcagtttttgattgcatggtggctggttcagtaccggttttcttctggaggcgaacggcttacactcagtaccagtggtttttgccggaagacccggggagttattccgtgtttatagacccggaagcagtgagaaatgggacagcttccattaaggaaattttgatgagttacagtaaagatcaagtaaggaaaatgagggaaaaagttgtagagacaattccaagaatagtgtatgcaaggccaagtggaggtcttgggagtgtcaaggatgcatttgaaattgcaatcgaaggagtattgaagagggtcaaggacgaaaacgaatggaaggaatacgtggatatgggcagttgaagatgatgttgggagatttgatgaatgttgtaaagtatataaatcttttccttaatattcagct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0017H17-A4Bcr/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02SLe0017H17.1" temp_strand="-" temp_description="C02SLe0017H17.1  AC215447.2 htgs_phase:3 submitted_to_sgn_as:C02SLe0017H17 sequenced_by:kribb upload_account_name:korea">
        <position start="56337" stop="55285"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="56037" g_stop="55585" g_length="453"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="453" r_length="453" r_score="0.998"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLe0017H17.1" gen_strand="-" ref_id="SGN-E281011" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>453</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0017H17.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E281011" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="56037" e_stop="55585"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TACAGCCCAAAGGGGACAGCTTGACTCGGCGGTCAGTTTTTGATTGCATGGTGGCTGGTTCAGTACCGGTTTTCTTCTGGAGGCGAACGGCTTACACTCAGTACCAGTGGTTTTTGCCGGAAGACCCGGGGAGTTATTCCGTGTTTATAGACCCGGAAGCAGTGAGAAATGGGACAGCTTCCATTAAGGAAATTTTGATGAGTTACAGTAAAGATCAAGTAAGGAAAATGAGGGAAAAAGTTGTAGAGACAATTCCAAGAATAGTGTATGCAAGGCCAAGTGGAGGTCTTGGGAGTGTCAAGGATGCATTTGAAATTGCAATCGAAGGAGTATTGAAGAGGGTCAAGGACGAAAACGAATGGAAGGAATACGTGGATATGGGCAGTTGAAGATGATGTTGGGAGATTTGATGAATGTTGTAAAGTATATAAATCTTTCCCTTAATATTCAGCT</genome_strand>
        <mrna_strand>TACAGCCCAAAGGGGACAGCTTGACTCGGCGGTCAGTTTTTGATTGCATGGTGGCTGGTTCAGTACCGGTTTTCTTCTGGAGGCGAACGGCTTACACTCAGTACCAGTGGTTTTTGCCGGAAGACCCGGGGAGTTATTCCGTGTTTATAGACCCGGAAGCAGTGAGAAATGGGACAGCTTCCATTAAGGAAATTTTGATGAGTTACAGTAAAGATCAAGTAAGGAAAATGAGGGAAAAAGTTGTAGAGACAATTCCAAGAATAGTGTATGCAAGGCCAAGTGGAGGTCTTGGGAGTGTCAAGGATGCATTTGAAATTGCAATCGAAGGAGTATTGAAGAGGGTCAAGGACGAAAACGAATGGAAGGAATACGTGGATATGGGCAGTTGAAGATGATGTTGGGAGATTTGATGAATGTTGTAAAGTATATAAATCTTTTCCTTAATATTCAGCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0017H17-A4Bcr/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E705685" ref_strand="+" ref_description="SGN-E705685 [FA27DD10]">
      <seq>gtaattttcagtatcagatttctactcatcctcgtttctggctttttaccttcttccttttttttcaacttgtggtgcttatctttactcgcaattcccctttccctttctcagttcattccccacccagtcctctcccccaattcccttcagaaatcgatgtatttcccgatttacagacagcccatcacgatgcaaatgtaatttatcccttcggcgattctgaatgcgagtatggtcgggtctatgtctataatttaccatccaaatttaacaaagatttagctttgttgacctgtgacgatctagacccatggaagtggcagtgtggtcttgtgaccaatgatggatatggaaagagatcgacggagctcgccggaatcttgccggggaatctctccgcagcgtggtatcgtacaaatcagttctcatcagaggtaatatttcattaccggcttttaaactatagatgtagaaccaacgacccagaatctgctacggctttctacattccgttctacgccggacaggctgttgggaaatacctttggactgatgaaattgaaaatcgtgattttcttagcaacaaattactgaaatgggttcaaaggcaaaagtattggaaaaaatataagggtttggaccatttcctcacacttggtcggataacgtgggatttccggcgattaggtgacccagaaaaactctggggatcctcttttctaaatcgaccgcagatgcagaatgttacgcgattcacaatcgagaaggctccatgggatgcaaacgatatcagtgtaccttaccctaccggaatccaccctcattccg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0017H17-A4Bcr/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02SLe0017H17.1" temp_strand="-" temp_description="C02SLe0017H17.1  AC215447.2 htgs_phase:3 submitted_to_sgn_as:C02SLe0017H17 sequenced_by:kribb upload_account_name:korea">
        <position start="57396" stop="55966"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="57096" g_stop="56266" g_length="831"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="831" r_length="831" r_score="0.999"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLe0017H17.1" gen_strand="-" ref_id="SGN-E705685" ref_strand="+">
        <total_alignment_score>0.999</total_alignment_score>
        <cumulative_length_of_scored_exons>831</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0017H17.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E705685" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="57096" e_stop="56266"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTAATTTTCAGTATCAGATTTCTACTCATCCTCGTTTCTGGCTTTTTACCTTCTTCCTTTTTTTTCAACTTGTGGTGCTTATCTTTACTCGCAATTCCCCTTTCCCTTTCTCAGTTCATTCCCCACCCAGTCCTCTCCCCCAATTCCCTTCAGAAATCGATGTATTTCCCGATTTACAGACAGCCCATCACGATGCAAATGTAATTTATCCCTTCGGCGATTCTGAATGCGAGTATGGTCGGGTCTATGTCTATAATTTACCATCCAAATTTAACAAAGATTTAGCTTTGTTGACCTGTGACGATCTAGACCCATGGAAGTGGCAGTGTGGTCTTGTGACCAATGATGGATATGGAAAGAGATCGACGGAGCTCGCCGGAATCTTGCCGGGGAATCTCTCCGCAGCGTGGTATCGTACAAATCAGTTCTCATCAGAGGTAATATTTCATTACCGGCTTTTAAACTATAGATGTAGAACCAACGACCCAGAATCTGCTACGGCTTTCTACATTCCGTTCTACGCCGGACAGGCTGTTGGGAAATACCTTTGGACTGATGAAATTGAAAATCGTGATTTTCTTAGCAACAAATTACTGAAATGGGTTCAAAGGCAAAAGTATTGGAAAAAATATAAGGGTTTGGACCATTTCCTCACACTTGGTCGGATAACGTGGGATTTCCGGCGATTAGGTGACCCAGAAAAACTCTGGGGATCCTCTTTTCTAAATCGACCGCAGATGCAGAATGTTACGCGATTCACAATCGAGAAGGCTCCATGGGATGCAAACGATATCAGTGTACCTTACCCTACCGGATTCCACCCTCATTCCG</genome_strand>
        <mrna_strand>GTAATTTTCAGTATCAGATTTCTACTCATCCTCGTTTCTGGCTTTTTACCTTCTTCCTTTTTTTTCAACTTGTGGTGCTTATCTTTACTCGCAATTCCCCTTTCCCTTTCTCAGTTCATTCCCCACCCAGTCCTCTCCCCCAATTCCCTTCAGAAATCGATGTATTTCCCGATTTACAGACAGCCCATCACGATGCAAATGTAATTTATCCCTTCGGCGATTCTGAATGCGAGTATGGTCGGGTCTATGTCTATAATTTACCATCCAAATTTAACAAAGATTTAGCTTTGTTGACCTGTGACGATCTAGACCCATGGAAGTGGCAGTGTGGTCTTGTGACCAATGATGGATATGGAAAGAGATCGACGGAGCTCGCCGGAATCTTGCCGGGGAATCTCTCCGCAGCGTGGTATCGTACAAATCAGTTCTCATCAGAGGTAATATTTCATTACCGGCTTTTAAACTATAGATGTAGAACCAACGACCCAGAATCTGCTACGGCTTTCTACATTCCGTTCTACGCCGGACAGGCTGTTGGGAAATACCTTTGGACTGATGAAATTGAAAATCGTGATTTTCTTAGCAACAAATTACTGAAATGGGTTCAAAGGCAAAAGTATTGGAAAAAATATAAGGGTTTGGACCATTTCCTCACACTTGGTCGGATAACGTGGGATTTCCGGCGATTAGGTGACCCAGAAAAACTCTGGGGATCCTCTTTTCTAAATCGACCGCAGATGCAGAATGTTACGCGATTCACAATCGAGAAGGCTCCATGGGATGCAAACGATATCAGTGTACCTTACCCTACCGGAATCCACCCTCATTCCG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0017H17-A4Bcr/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E706144" ref_strand="+" ref_description="SGN-E706144 [FA29AE11]">
      <seq>gtaattttcagtatcagatttctactcatcctcgtttctggctttttaccttcttccttttttttcaacttgtggtgcttatctttactcgcaattcccctttccctttctcagttcattccccacccagtcctctcccccaattcccttcagaaatcgatgtatttcccgatttacagacagcccatcacgatgcaaatgtaatttatcccttcggcgattctgaatgcgagtatggtcgggtctatgtctataatttaccatccaaatttaacaaagatttagctttgttgacctgtgacgatctagacccatggaagtggcagtgtggtcttgtgaccaatgatggatatggaaagagatcgacggagctcgccggaatcttgccggggaatctctccgcagcgtggtatcgtacaaatcagttctcatcagaggtaatatttcattaccggcttttaaactatagatgtagaaccaacgacccagaatctgctacggctttctacattccgttctacgccggacaggctgttgggaaatacctttggactgatgaaattgaaaatcgtgattttcttagcaacaaattactgaaatgggttcaaaggcaaaagtattggaaaaaatataagggtttggaccatttcctcacacttggtcggataacgtgggatttccggcgattaggtgacccagaaaaactctggggatcctcttttctaaatcgaccgcagatgcagaatgttacgcgattcacaatcgagaaggctccatgggaatgcaacgatatcagtgtaccctaccctaccggatt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0017H17-A4Bcr/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02SLe0017H17.1" temp_strand="-" temp_description="C02SLe0017H17.1  AC215447.2 htgs_phase:3 submitted_to_sgn_as:C02SLe0017H17 sequenced_by:kribb upload_account_name:korea">
        <position start="57396" stop="55980"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="57096" g_stop="56280" g_length="817"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="817" r_length="817" r_score="0.994"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLe0017H17.1" gen_strand="-" ref_id="SGN-E706144" ref_strand="+">
        <total_alignment_score>0.994</total_alignment_score>
        <cumulative_length_of_scored_exons>817</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0017H17.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E706144" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="57096" e_stop="56280"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTAATTTTCAGTATCAGATTTCTACTCATCCTCGTTTCTGGCTTTTTACCTTCTTCCTTTTTTTTCAACTTGTGGTGCTTATCTTTACTCGCAATTCCCCTTTCCCTTTCTCAGTTCATTCCCCACCCAGTCCTCTCCCCCAATTCCCTTCAGAAATCGATGTATTTCCCGATTTACAGACAGCCCATCACGATGCAAATGTAATTTATCCCTTCGGCGATTCTGAATGCGAGTATGGTCGGGTCTATGTCTATAATTTACCATCCAAATTTAACAAAGATTTAGCTTTGTTGACCTGTGACGATCTAGACCCATGGAAGTGGCAGTGTGGTCTTGTGACCAATGATGGATATGGAAAGAGATCGACGGAGCTCGCCGGAATCTTGCCGGGGAATCTCTCCGCAGCGTGGTATCGTACAAATCAGTTCTCATCAGAGGTAATATTTCATTACCGGCTTTTAAACTATAGATGTAGAACCAACGACCCAGAATCTGCTACGGCTTTCTACATTCCGTTCTACGCCGGACAGGCTGTTGGGAAATACCTTTGGACTGATGAAATTGAAAATCGTGATTTTCTTAGCAACAAATTACTGAAATGGGTTCAAAGGCAAAAGTATTGGAAAAAATATAAGGGTTTGGACCATTTCCTCACACTTGGTCGGATAACGTGGGATTTCCGGCGATTAGGTGACCCAGAAAAACTCTGGGGATCCTCTTTTCTAAATCGACCGCAGATGCAGAATGTTACGCGATTCACAATCGAGAAGGCTCCATGGGATGCAAACGATATCAGTGTACCTTACCCTACCGGATT</genome_strand>
        <mrna_strand>GTAATTTTCAGTATCAGATTTCTACTCATCCTCGTTTCTGGCTTTTTACCTTCTTCCTTTTTTTTCAACTTGTGGTGCTTATCTTTACTCGCAATTCCCCTTTCCCTTTCTCAGTTCATTCCCCACCCAGTCCTCTCCCCCAATTCCCTTCAGAAATCGATGTATTTCCCGATTTACAGACAGCCCATCACGATGCAAATGTAATTTATCCCTTCGGCGATTCTGAATGCGAGTATGGTCGGGTCTATGTCTATAATTTACCATCCAAATTTAACAAAGATTTAGCTTTGTTGACCTGTGACGATCTAGACCCATGGAAGTGGCAGTGTGGTCTTGTGACCAATGATGGATATGGAAAGAGATCGACGGAGCTCGCCGGAATCTTGCCGGGGAATCTCTCCGCAGCGTGGTATCGTACAAATCAGTTCTCATCAGAGGTAATATTTCATTACCGGCTTTTAAACTATAGATGTAGAACCAACGACCCAGAATCTGCTACGGCTTTCTACATTCCGTTCTACGCCGGACAGGCTGTTGGGAAATACCTTTGGACTGATGAAATTGAAAATCGTGATTTTCTTAGCAACAAATTACTGAAATGGGTTCAAAGGCAAAAGTATTGGAAAAAATATAAGGGTTTGGACCATTTCCTCACACTTGGTCGGATAACGTGGGATTTCCGGCGATTAGGTGACCCAGAAAAACTCTGGGGATCCTCTTTTCTAAATCGACCGCAGATGCAGAATGTTACGCGATTCACAATCGAGAAGGCTCCATGGGAATGCAACGATATCAGTGTACCCTACCCTACCGGATT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0017H17-A4Bcr/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E720102" ref_strand="+" ref_description="SGN-E720102 [FC09DC10]">
      <seq>gggcgattggcggccaatcggccgaattgcttcttctctgcaattttttcaagtccagttttcatcagatgctgtcaccttactccgacgagtcgccgggcgccgatgaagctatgcgcaaacctctaaaaactaacaacaatgattttctaaagaatgctgtgagtaattttcagtatcagatttctactcatcctcgtttctggctttttaccttcttccttttttttcaacttgtggtgcttatctttactcgcaattcccctttccctttctcagttcattccccacccagtcctctcccccaattcccttcagaaatcgatgtatttcccgatttacagacagcccatcacgatgcaaatgtaatttatcccttcggcgattctgaatgcgagtatggtcgggtctatgtctataatttaccatccaaatttaacaaagatttagctttgttgacctgtgacgatctagacccatggaagtggcagtgtggtcttgtgaccaatgatggatatggaaagagatcgacggagctcgccggaatcttgccggggaatctctccgcagcgtggtatcgtacaaatcagttctcatcagaggtaatatttcattaccggcttttaaactatagatgtagaaccaacgacccagaatctgctacggctttctacattccgttctacgccggacaggctgttgggaaatacctttggactgatgaaattgaaaatcgtgattttcttagcaacaaattactgaaatgggttcaaaggcaaaagtattggaaaaaatataagggtttggaccatt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0017H17-A4Bcr/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02SLe0017H17.1" temp_strand="-" temp_description="C02SLe0017H17.1  AC215447.2 htgs_phase:3 submitted_to_sgn_as:C02SLe0017H17 sequenced_by:kribb upload_account_name:korea">
        <position start="57538" stop="56149"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="57239" g_stop="56449" g_length="791"/>
          <reference_exon_boundary r_type="cDNA" r_start="23" r_stop="813" r_length="791" r_score="0.996"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLe0017H17.1" gen_strand="-" ref_id="SGN-E720102" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>791</cumulative_length_of_scored_exons>
        <coverage percentage="0.973" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0017H17.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E720102" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="57239" e_stop="56449"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGCATTTCTTCTTCTCTGCAATTTTTTCAAGTCCAGTTTTCATCAGATGCTGTCACCTTACTCCGACGAGTCGCCGGGCGCCGATGAAGCTATGCGCAAACCTCTAAAAACTAACAACAATGATTTTCTAAAGAATGCTGTGAGTAATTTTCAGTATCAGATTTCTACTCATCCTCGTTTCTGGCTTTTTACCTTCTTCCTTTTTTTTCAACTTGTGGTGCTTATCTTTACTCGCAATTCCCCTTTCCCTTTCTCAGTTCATTCCCCACCCAGTCCTCTCCCCCAATTCCCTTCAGAAATCGATGTATTTCCCGATTTACAGACAGCCCATCACGATGCAAATGTAATTTATCCCTTCGGCGATTCTGAATGCGAGTATGGTCGGGTCTATGTCTATAATTTACCATCCAAATTTAACAAAGATTTAGCTTTGTTGACCTGTGACGATCTAGACCCATGGAAGTGGCAGTGTGGTCTTGTGACCAATGATGGATATGGAAAGAGATCGACGGAGCTCGCCGGAATCTTGCCGGGGAATCTCTCCGCAGCGTGGTATCGTACAAATCAGTTCTCATCAGAGGTAATATTTCATTACCGGCTTTTAAACTATAGATGTAGAACCAACGACCCAGAATCTGCTACGGCTTTCTACATTCCGTTCTACGCCGGACAGGCTGTTGGGAAATACCTTTGGACTGATGAAATTGAAAATCGTGATTTTCTTAGCAACAAATTACTGAAATGGGTTCAAAGGCAAAAGTATTGGAAAAAATATAAGGGTTTGGACCATT</genome_strand>
        <mrna_strand>CGAATTGCTTCTTCTCTGCAATTTTTTCAAGTCCAGTTTTCATCAGATGCTGTCACCTTACTCCGACGAGTCGCCGGGCGCCGATGAAGCTATGCGCAAACCTCTAAAAACTAACAACAATGATTTTCTAAAGAATGCTGTGAGTAATTTTCAGTATCAGATTTCTACTCATCCTCGTTTCTGGCTTTTTACCTTCTTCCTTTTTTTTCAACTTGTGGTGCTTATCTTTACTCGCAATTCCCCTTTCCCTTTCTCAGTTCATTCCCCACCCAGTCCTCTCCCCCAATTCCCTTCAGAAATCGATGTATTTCCCGATTTACAGACAGCCCATCACGATGCAAATGTAATTTATCCCTTCGGCGATTCTGAATGCGAGTATGGTCGGGTCTATGTCTATAATTTACCATCCAAATTTAACAAAGATTTAGCTTTGTTGACCTGTGACGATCTAGACCCATGGAAGTGGCAGTGTGGTCTTGTGACCAATGATGGATATGGAAAGAGATCGACGGAGCTCGCCGGAATCTTGCCGGGGAATCTCTCCGCAGCGTGGTATCGTACAAATCAGTTCTCATCAGAGGTAATATTTCATTACCGGCTTTTAAACTATAGATGTAGAACCAACGACCCAGAATCTGCTACGGCTTTCTACATTCCGTTCTACGCCGGACAGGCTGTTGGGAAATACCTTTGGACTGATGAAATTGAAAATCGTGATTTTCTTAGCAACAAATTACTGAAATGGGTTCAAAGGCAAAAGTATTGGAAAAAATATAAGGGTTTGGACCATT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0017H17-A4Bcr/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E698108" ref_strand="+" ref_description="SGN-E698108 [FA05BB04]">
      <seq>ccccgttaaacaagaattttctatacttaataatactctgttctctactttttagggcatttcttcttctctgcaattttttcaagtccagttttcatcagatgctgtcaccttactccgacgagtcgccgggcgccgatgaagctatgcgcaaacctctaaaaactaacaacaatgattttctaaagaatgctgtgagtaattttcagtatcagatttctactcatcctcgtttctggctttttaccttcttccttttttttcaacttgtggtgcttatctttactcgcaattcccctttccctttctcagttcattccccacccagtcctctcccccaattcccttcagaaatcgatgtatttcccgatttacagacagcccatcacgatgcaaatgtaatttatcccttcggcgattctgaatgcgagtatggtcgggtctatgtctataatttaccatccaaatttaacaaagatttagctttgttgacctgtgacgatctagacccatggaagtggcagtgtggccttgtgaccaatgatggatatggaaagagatcgacggagctcgccggaatcttgccggggaatctctccgcagcgtggtatcgtacaaatcacttctcatcagaggtaatatttcattaccggcttttaaactatagatgtagaacccacgacccagaatctgctacggctttctacattccgttctacgccggacaggctgttgggaaaatcctttggactgatgaaattgaaaatcgtgattttctt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0017H17-A4Bcr/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02SLe0017H17.1" temp_strand="-" temp_description="C02SLe0017H17.1  AC215447.2 htgs_phase:3 submitted_to_sgn_as:C02SLe0017H17 sequenced_by:kribb upload_account_name:korea">
        <position start="57594" stop="56216"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="57294" g_stop="56516" g_length="779"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="779" r_length="779" r_score="0.990"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLe0017H17.1" gen_strand="-" ref_id="SGN-E698108" ref_strand="+">
        <total_alignment_score>0.990</total_alignment_score>
        <cumulative_length_of_scored_exons>779</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0017H17.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E698108" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="57294" e_stop="56516"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTCTGCTAAACAAGAATTTTCTATACTTAATAATACTCTGTTCTCTACTTTTTAGGGCATTTCTTCTTCTCTGCAATTTTTTCAAGTCCAGTTTTCATCAGATGCTGTCACCTTACTCCGACGAGTCGCCGGGCGCCGATGAAGCTATGCGCAAACCTCTAAAAACTAACAACAATGATTTTCTAAAGAATGCTGTGAGTAATTTTCAGTATCAGATTTCTACTCATCCTCGTTTCTGGCTTTTTACCTTCTTCCTTTTTTTTCAACTTGTGGTGCTTATCTTTACTCGCAATTCCCCTTTCCCTTTCTCAGTTCATTCCCCACCCAGTCCTCTCCCCCAATTCCCTTCAGAAATCGATGTATTTCCCGATTTACAGACAGCCCATCACGATGCAAATGTAATTTATCCCTTCGGCGATTCTGAATGCGAGTATGGTCGGGTCTATGTCTATAATTTACCATCCAAATTTAACAAAGATTTAGCTTTGTTGACCTGTGACGATCTAGACCCATGGAAGTGGCAGTGTGGTCTTGTGACCAATGATGGATATGGAAAGAGATCGACGGAGCTCGCCGGAATCTTGCCGGGGAATCTCTCCGCAGCGTGGTATCGTACAAATCAGTTCTCATCAGAGGTAATATTTCATTACCGGCTTTTAAACTATAGATGTAGAACCAACGACCCAGAATCTGCTACGGCTTTCTACATTCCGTTCTACGCCGGACAGGCTGTTGGGAAATACCTTTGGACTGATGAAATTGAAAATCGTGATTTTCTT</genome_strand>
        <mrna_strand>CCCCGTTAAACAAGAATTTTCTATACTTAATAATACTCTGTTCTCTACTTTTTAGGGCATTTCTTCTTCTCTGCAATTTTTTCAAGTCCAGTTTTCATCAGATGCTGTCACCTTACTCCGACGAGTCGCCGGGCGCCGATGAAGCTATGCGCAAACCTCTAAAAACTAACAACAATGATTTTCTAAAGAATGCTGTGAGTAATTTTCAGTATCAGATTTCTACTCATCCTCGTTTCTGGCTTTTTACCTTCTTCCTTTTTTTTCAACTTGTGGTGCTTATCTTTACTCGCAATTCCCCTTTCCCTTTCTCAGTTCATTCCCCACCCAGTCCTCTCCCCCAATTCCCTTCAGAAATCGATGTATTTCCCGATTTACAGACAGCCCATCACGATGCAAATGTAATTTATCCCTTCGGCGATTCTGAATGCGAGTATGGTCGGGTCTATGTCTATAATTTACCATCCAAATTTAACAAAGATTTAGCTTTGTTGACCTGTGACGATCTAGACCCATGGAAGTGGCAGTGTGGCCTTGTGACCAATGATGGATATGGAAAGAGATCGACGGAGCTCGCCGGAATCTTGCCGGGGAATCTCTCCGCAGCGTGGTATCGTACAAATCACTTCTCATCAGAGGTAATATTTCATTACCGGCTTTTAAACTATAGATGTAGAACCCACGACCCAGAATCTGCTACGGCTTTCTACATTCCGTTCTACGCCGGACAGGCTGTTGGGAAAATCCTTTGGACTGATGAAATTGAAAATCGTGATTTTCTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0017H17-A4Bcr/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E314854" ref_strand="+" ref_description="SGN-E314854 [cTOA-20-N16]">
      <seq>tgctaaacaagaattttctatacttaataatactctgttctctactttttagggcatttcttcttctctgcaattttttcaagtccagttttcatcagatgctgtcaccttactccgacgagtcgccgggcgccgatgaagctatgcgcaaacctctaaaaactaacaacaatgattttctaaagaatgctgtgagtaattttcagtatcagatttctactcatcctcgtttctggctttttaccttcttccttttttttcaacttgtggtgcttatctttactcgcaattcccctttccctttctcagttcattccccacccagtcctctcccccaattcccttcagaaatcgatgtatttcccgatttacagacagcccatcacgatgcaaatgtaatttatcccttcggcgattctgaatgcgagtatggtcgggtctatgtctataatttaccatccaaatttaacaaagatttagctttgttgacctgtgacgatctagacccatggaagtggcagtgtggtcttgtgaccaatgatggatatggaaagagatcgacggagctcgccgggatcttgccggggaatc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0017H17-A4Bcr/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02SLe0017H17.1" temp_strand="-" temp_description="C02SLe0017H17.1  AC215447.2 htgs_phase:3 submitted_to_sgn_as:C02SLe0017H17 sequenced_by:kribb upload_account_name:korea">
        <position start="57591" stop="56401"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="57291" g_stop="56701" g_length="591"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="591" r_length="591" r_score="0.998"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLe0017H17.1" gen_strand="-" ref_id="SGN-E314854" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>591</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0017H17.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E314854" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="57291" e_stop="56701"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGCTAAACAAGAATTTTCTATACTTAATAATACTCTGTTCTCTACTTTTTAGGGCATTTCTTCTTCTCTGCAATTTTTTCAAGTCCAGTTTTCATCAGATGCTGTCACCTTACTCCGACGAGTCGCCGGGCGCCGATGAAGCTATGCGCAAACCTCTAAAAACTAACAACAATGATTTTCTAAAGAATGCTGTGAGTAATTTTCAGTATCAGATTTCTACTCATCCTCGTTTCTGGCTTTTTACCTTCTTCCTTTTTTTTCAACTTGTGGTGCTTATCTTTACTCGCAATTCCCCTTTCCCTTTCTCAGTTCATTCCCCACCCAGTCCTCTCCCCCAATTCCCTTCAGAAATCGATGTATTTCCCGATTTACAGACAGCCCATCACGATGCAAATGTAATTTATCCCTTCGGCGATTCTGAATGCGAGTATGGTCGGGTCTATGTCTATAATTTACCATCCAAATTTAACAAAGATTTAGCTTTGTTGACCTGTGACGATCTAGACCCATGGAAGTGGCAGTGTGGTCTTGTGACCAATGATGGATATGGAAAGAGATCGACGGAGCTCGCCGGAATCTTGCCGGGGAATC</genome_strand>
        <mrna_strand>TGCTAAACAAGAATTTTCTATACTTAATAATACTCTGTTCTCTACTTTTTAGGGCATTTCTTCTTCTCTGCAATTTTTTCAAGTCCAGTTTTCATCAGATGCTGTCACCTTACTCCGACGAGTCGCCGGGCGCCGATGAAGCTATGCGCAAACCTCTAAAAACTAACAACAATGATTTTCTAAAGAATGCTGTGAGTAATTTTCAGTATCAGATTTCTACTCATCCTCGTTTCTGGCTTTTTACCTTCTTCCTTTTTTTTCAACTTGTGGTGCTTATCTTTACTCGCAATTCCCCTTTCCCTTTCTCAGTTCATTCCCCACCCAGTCCTCTCCCCCAATTCCCTTCAGAAATCGATGTATTTCCCGATTTACAGACAGCCCATCACGATGCAAATGTAATTTATCCCTTCGGCGATTCTGAATGCGAGTATGGTCGGGTCTATGTCTATAATTTACCATCCAAATTTAACAAAGATTTAGCTTTGTTGACCTGTGACGATCTAGACCCATGGAAGTGGCAGTGTGGTCTTGTGACCAATGATGGATATGGAAAGAGATCGACGGAGCTCGCCGGGATCTTGCCGGGGAATC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0017H17-A4Bcr/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E715147" ref_strand="+" ref_description="SGN-E715147 [FB13BH11]">
      <seq>aaaaatcatggcgaggcgttgcatgtcgttttctcgaacacttctctccagctgtaggccatcaacagtaagttcctcaccaagtgtacaatcccttctcggccagcgccttcagtctcgccgttctctttccaccattctcaccaggactaacggagtgctgggatgcgcccaatcgctcttaccgcttcacagcgctgtggcagccacccgtctgacatcacacattcaaatggaggcgcgcacttgttgccagttgtctcagggtacctttttctgtcgcacttgccctgatcggtagttttcaattgtgagtcctaatttccgcacctaatgctgataaaagtcgcatctttgcaaagtagttattcaggaggatcaaaacattttgagttctgttctccttatataattgcccttttctatctcttaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0017H17-A4Bcr/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02SLe0017H17.1" temp_strand="+" temp_description="C02SLe0017H17.1  AC215447.2 htgs_phase:3 submitted_to_sgn_as:C02SLe0017H17 sequenced_by:kribb upload_account_name:korea">
        <position start="64293" stop="65417"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="64593" g_stop="64739" g_length="147"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="147" r_length="147" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="64740" i_stop="64827" i_length="88">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="64828" g_stop="65116" g_length="289"/>
          <reference_exon_boundary r_type="cDNA" r_start="148" r_stop="436" r_length="289" r_score="0.993"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="437" polyA_stop="449"/>
      <MATCH_line gen_id="C02SLe0017H17.1" gen_strand="+" ref_id="SGN-E715147" ref_strand="+">
        <total_alignment_score>0.995</total_alignment_score>
        <cumulative_length_of_scored_exons>436</cumulative_length_of_scored_exons>
        <coverage percentage="0.971" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0017H17.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E715147" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="64593" e_stop="64739"/>
          <exon e_start="64828" e_stop="65116"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAAATCATGGCGAGGCGTTGCATGTCGTTTTCTCGAACACTTCTCTCCAGCTGTAGGCCATCAACAGTAAGTTCCTCACCAAGTGTACAATCCCTTCTCGGCCAGCGCCTTCAGTCTCGCCGTTCTCTTTCCACCATTCTCACCAGGTTCCTTTCCCTATCGGTTTATCCTTTATATTTCACTTAATTAGGCTAAACCTGACTTTTTAAATTTGTTTAATGTATTTCTTTTCAGGACTAACGGAGTGCTGGGATGCGCCCAATCGCTCTTACCGCTTCACAGCGCTGTGGCAGCCACCCGTCTGACATCACACATTCAAATGGAGGCGCGCACTTGTTGCCAGTTGTCTCAGGGTACCTTTTTCTGTCGCACTTGCCCTGATCGGTAGTTTTCAATTGTGAGTCCTAATTTCCGCACCTAATGCTGATAAAAGTCGCATCTTTGCAAAGTAGTTATTCAGGAGGATCAAAACATTTTGAGTTCTGTTCTCCTTATATAATTGCCCTTTTCTATCTCTTAGAAG</genome_strand>
        <mrna_strand>AAAAATCATGGCGAGGCGTTGCATGTCGTTTTCTCGAACACTTCTCTCCAGCTGTAGGCCATCAACAGTAAGTTCCTCACCAAGTGTACAATCCCTTCTCGGCCAGCGCCTTCAGTCTCGCCGTTCTCTTTCCACCATTCTCACCAG........................................................................................GACTAACGGAGTGCTGGGATGCGCCCAATCGCTCTTACCGCTTCACAGCGCTGTGGCAGCCACCCGTCTGACATCACACATTCAAATGGAGGCGCGCACTTGTTGCCAGTTGTCTCAGGGTACCTTTTTCTGTCGCACTTGCCCTGATCGGTAGTTTTCAATTGTGAGTCCTAATTTCCGCACCTAATGCTGATAAAAGTCGCATCTTTGCAAAGTAGTTATTCAGGAGGATCAAAACATTTTGAGTTCTGTTCTCCTTATATAATTGCCCTTTTCTATCTCTTAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0017H17-A4Bcr/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E349504" ref_strand="+" ref_description="SGN-E349504 [cTOS-1-M5]">
      <seq>gaaaacctgctgtaccaaacattttggagaattttctgtgaacttttccctggaagtacaaaactgtaagctctaaattcaatttgatttcctagtaatttttgggttgatgttggaaatttcagaattcttgaaagccctgaaaatgataattctataggagaaattatagcagtccttacagttttatgttgatagagatcatctcttcatttgaagtatttaaattttttgattggctatcactaggtgattactaatgttctactttaccaaataaaccaaatttacatctttctgattttctaatttgattaaagccataaaagcaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0017H17-A4Bcr/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02SLe0017H17.1" temp_strand="+" temp_description="C02SLe0017H17.1  AC215447.2 htgs_phase:3 submitted_to_sgn_as:C02SLe0017H17 sequenced_by:kribb upload_account_name:korea">
        <position start="69567" stop="70499"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="69867" g_stop="70206" g_length="340"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="340" r_length="340" r_score="0.982"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLe0017H17.1" gen_strand="+" ref_id="SGN-E349504" ref_strand="+">
        <total_alignment_score>0.982</total_alignment_score>
        <cumulative_length_of_scored_exons>340</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0017H17.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E349504" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="69867" e_stop="70206"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAAAACCTGCTGTACCAAACATTTTGGAGAATTTTCTGTGAACTTTTCCCTGGAAGTACAAAACTGTAAGCTCTAAATTCAATTTGATTTCCTAGTAATTTTTGGGTTGATGTTGGAAATTTCAGAATTCTTGAAAGCCCTGAAAATGATAATTCTATAGGAGAAATTATAGCAGTCCTTACAGTTTTATGTTGATAGAGATCATCTCTTCATTTGAAGTATTTAAATTTTTTGATTGGCTATCACTAGGTGATTACTAATGTTCTACTTTACCAAATAAACCAAATTTACATCTTTCTGATTTTCTAATTTGATTAAAGCCATAAAAGCAGACGTTATA</genome_strand>
        <mrna_strand>GAAAACCTGCTGTACCAAACATTTTGGAGAATTTTCTGTGAACTTTTCCCTGGAAGTACAAAACTGTAAGCTCTAAATTCAATTTGATTTCCTAGTAATTTTTGGGTTGATGTTGGAAATTTCAGAATTCTTGAAAGCCCTGAAAATGATAATTCTATAGGAGAAATTATAGCAGTCCTTACAGTTTTATGTTGATAGAGATCATCTCTTCATTTGAAGTATTTAAATTTTTTGATTGGCTATCACTAGGTGATTACTAATGTTCTACTTTACCAAATAAACCAAATTTACATCTTTCTGATTTTCTAATTTGATTAAAGCCATAAAAGCAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0017H17-A4Bcr/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E350835" ref_strand="+" ref_description="SGN-E350835 [cTOS-7-I7]">
      <seq>atttttgggttgatgttggaaatttcagaattcttgaaagccctgaaaatgataattctataggagaaattatagcagtccttacagttttatgttgatagagatcatctcttcatttgaagtatttaaattttttgattggctatcactaggtgattactaatgttctactttaccaaataaaccaaatttacatctttctgattttctaatttgattaaagccataaaagcagacgttatagtcttctttagttaccatttgatgcagaactagtgacaagtgcactagacagttatttctgtgatgtatacgaaaatgatgtttatttgtatttattaaaatgtaactatttctcaacattcaattatttggttttaggcattgtgaagaataggtttatgttgtggctaggagaaactcagggcagttcaaccctttgtagtactgaaagcatatccatttgtctatttccatgcatcaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0017H17-A4Bcr/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02SLe0017H17.1" temp_strand="+" temp_description="C02SLe0017H17.1  AC215447.2 htgs_phase:3 submitted_to_sgn_as:C02SLe0017H17 sequenced_by:kribb upload_account_name:korea">
        <position start="69664" stop="70747"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="69964" g_stop="70440" g_length="477"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="477" r_length="477" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="483" polyA_stop="496"/>
      <MATCH_line gen_id="C02SLe0017H17.1" gen_strand="+" ref_id="SGN-E350835" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>477</cumulative_length_of_scored_exons>
        <coverage percentage="0.962" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0017H17.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E350835" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="69964" e_stop="70440"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATTTTTGGGTTGATGTTGGAAATTTCAGAATTCTTGAAAGCCCTGAAAATGATAATTCTATAGGAGAAATTATAGCAGTCCTTACAGTTTTATGTTGATAGAGATCATCTCTTCATTTGAAGTATTTAAATTTTTTGATTGGCTATCACTAGGTGATTACTAATGTTCTACTTTACCAAATAAACCAAATTTACATCTTTCTGATTTTCTAATTTGATTAAAGCCATAAAAGCAGACGTTATAGTCTTCTTTAGTTACCATTTGATGCAGAACTAGTGACAAGTGCACTAGACAGTTATTTCTGTGATGTATACGAAAATGATGTTTATTTGTATTTATTAAAATGTAACTATTTCTCAACATTCAATTATTTGGTTTTAGGCATTGTGAAGAATAGGTTTATGTTGTGGCTAGGAGAAACTCAGGGCAGTTCAACCCTTTGTAGTACTGAAAGCATATCCATTTGTCTATTTCCAT</genome_strand>
        <mrna_strand>ATTTTTGGGTTGATGTTGGAAATTTCAGAATTCTTGAAAGCCCTGAAAATGATAATTCTATAGGAGAAATTATAGCAGTCCTTACAGTTTTATGTTGATAGAGATCATCTCTTCATTTGAAGTATTTAAATTTTTTGATTGGCTATCACTAGGTGATTACTAATGTTCTACTTTACCAAATAAACCAAATTTACATCTTTCTGATTTTCTAATTTGATTAAAGCCATAAAAGCAGACGTTATAGTCTTCTTTAGTTACCATTTGATGCAGAACTAGTGACAAGTGCACTAGACAGTTATTTCTGTGATGTATACGAAAATGATGTTTATTTGTATTTATTAAAATGTAACTATTTCTCAACATTCAATTATTTGGTTTTAGGCATTGTGAAGAATAGGTTTATGTTGTGGCTAGGAGAAACTCAGGGCAGTTCAACCCTTTGTAGTACTGAAAGCATATCCATTTGTCTATTTCCAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0017H17-A4Bcr/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E357610" ref_strand="+" ref_description="SGN-E357610 [cTOS-24-C21]">
      <seq>atttttgggttgatgttggaaatttcagaattcttgaaagccctgaaaatgataattctataggagaaattatagcagtccttacagttttatgttgatagagatcatctcttcatttgaagtatttaaattttttgattggctatcactaggtgattactaatgttctactttaccaaataaaccaaatttacatctttctgattttctaatttgattaaagccataaaagcagacgttatagtcttctttagttaccatttgatgcagaactagtgacaagtgcactagacagttatttctgtgatgtatacgaaaatgatgtttatttgtatttattaaaatgtaactatttctcaacattcaattatttggttttaggcattgtgaagaataggtttatgttgtggctaggagaaactcagggcagttcaaccctttgtagtactgaaagcatatccatttgtctatttccatgcatcaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0017H17-A4Bcr/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02SLe0017H17.1" temp_strand="+" temp_description="C02SLe0017H17.1  AC215447.2 htgs_phase:3 submitted_to_sgn_as:C02SLe0017H17 sequenced_by:kribb upload_account_name:korea">
        <position start="69664" stop="70747"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="69964" g_stop="70440" g_length="477"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="477" r_length="477" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="483" polyA_stop="496"/>
      <MATCH_line gen_id="C02SLe0017H17.1" gen_strand="+" ref_id="SGN-E357610" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>477</cumulative_length_of_scored_exons>
        <coverage percentage="0.962" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0017H17.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E357610" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="69964" e_stop="70440"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATTTTTGGGTTGATGTTGGAAATTTCAGAATTCTTGAAAGCCCTGAAAATGATAATTCTATAGGAGAAATTATAGCAGTCCTTACAGTTTTATGTTGATAGAGATCATCTCTTCATTTGAAGTATTTAAATTTTTTGATTGGCTATCACTAGGTGATTACTAATGTTCTACTTTACCAAATAAACCAAATTTACATCTTTCTGATTTTCTAATTTGATTAAAGCCATAAAAGCAGACGTTATAGTCTTCTTTAGTTACCATTTGATGCAGAACTAGTGACAAGTGCACTAGACAGTTATTTCTGTGATGTATACGAAAATGATGTTTATTTGTATTTATTAAAATGTAACTATTTCTCAACATTCAATTATTTGGTTTTAGGCATTGTGAAGAATAGGTTTATGTTGTGGCTAGGAGAAACTCAGGGCAGTTCAACCCTTTGTAGTACTGAAAGCATATCCATTTGTCTATTTCCAT</genome_strand>
        <mrna_strand>ATTTTTGGGTTGATGTTGGAAATTTCAGAATTCTTGAAAGCCCTGAAAATGATAATTCTATAGGAGAAATTATAGCAGTCCTTACAGTTTTATGTTGATAGAGATCATCTCTTCATTTGAAGTATTTAAATTTTTTGATTGGCTATCACTAGGTGATTACTAATGTTCTACTTTACCAAATAAACCAAATTTACATCTTTCTGATTTTCTAATTTGATTAAAGCCATAAAAGCAGACGTTATAGTCTTCTTTAGTTACCATTTGATGCAGAACTAGTGACAAGTGCACTAGACAGTTATTTCTGTGATGTATACGAAAATGATGTTTATTTGTATTTATTAAAATGTAACTATTTCTCAACATTCAATTATTTGGTTTTAGGCATTGTGAAGAATAGGTTTATGTTGTGGCTAGGAGAAACTCAGGGCAGTTCAACCCTTTGTAGTACTGAAAGCATATCCATTTGTCTATTTCCAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0017H17-A4Bcr/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E316258" ref_strand="+" ref_description="SGN-E316258 [cTOA-23-N15]">
      <seq>aataatcttattctgctttaaattctcacttccactttttttaaataatggctattgtttctggtctttcatctcctcttggtcctccggcatgtgaaaaagatgccaaggtccttcagtttatcgatgacatgactaaaaatattgatcctgaacaagtgaaagtattggctgaaatattaacccgaaatgccaatactgagtacctccggaggttcaacattaatggtgctattgaccgtgaaactttcaagtctaaggtccccgttgttacatacgaggatcttaaacctgatattgatcgtattgctaatggtgatcgttctcccattttctcatcacaccctatctccgaattccttaccagttcggggacgtctgctggagagagaaaactgatgcccacaattgcggatgagctagaacgcagacaaaaactgtacaaccttctacagcccgtgatgaatctgtatgtgcctggtttagataaggggaagggattgtactttctatttatncaggcagaaacgaagacgcctagtggccttgttgcacgtccagtcctaacaagttactacaaaagtgaacaattcaagacaaggccatacgatccatacaatgtgtatacaagccccaacgagaccattctctgtgtcgattcattccaaagcatgtattcccaatgc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0017H17-A4Bcr/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02SLe0017H17.1" temp_strand="+" temp_description="C02SLe0017H17.1  AC215447.2 htgs_phase:3 submitted_to_sgn_as:C02SLe0017H17 sequenced_by:kribb upload_account_name:korea">
        <position start="78535" stop="80237"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="78835" g_stop="79201" g_length="367"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="367" r_length="367" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="79202" i_stop="79380" i_length="179">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="79381" g_stop="79482" g_length="102"/>
          <reference_exon_boundary r_type="cDNA" r_start="368" r_stop="469" r_length="102" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="79483" i_stop="79719" i_length="237">
            <donor d_prob="0.986" d_score="1.00"/>
            <acceptor a_prob="0.991" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="79720" g_stop="79937" g_length="218"/>
          <reference_exon_boundary r_type="cDNA" r_start="470" r_stop="686" r_length="217" r_score="0.986"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLe0017H17.1" gen_strand="+" ref_id="SGN-E316258" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>687</cumulative_length_of_scored_exons>
        <coverage percentage="1.001" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0017H17.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E316258" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="78835" e_stop="79201"/>
          <exon e_start="79381" e_stop="79482"/>
          <exon e_start="79720" e_stop="79937"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AATAATCTTATTCTGCTTTAAATTCTCACTTCCACTTTTTTTAAATAATGGCTATTGTTTCTGGTCTTTCATCTCCTCTTGGTCCTCCGGCATGTGAAAAAGATGCCAAGGTCCTTCAGTTTATCGATGACATGACTAAAAATATTGATCCTGAACAAGTGAAAGTATTGGCTGAAATATTAACCCGAAATGCCAATACTGAGTACCTCCGGAGGTTCAACATTAATGGTGCTATTGACCGTGAAACTTTCAAGTCTAAGGTCCCCGTTGTTACATACGAGGATCTTAAACCTGATATTGATCGTATTGCTAATGGTGATCGTTCTCCCATTTTCTCATCACACCCTATCTCCGAATTCCTTACCAGGTATGATTTCACAACATGTCTTGCATATATACTTGTTATAATTAGTAAAAGAAAAATGCTTTACATTCTTTTTATCTGAAGTATGTAATTATTACTCACTACTGTAGTGTACTAGTAGTGATTAGTTACGTACACAGTATAATATCGTATTGATGAAATACTGTTTTGATAATATATAGTTCGGGGACGTCTGCTGGAGAGAGAAAACTGATGCCCACAATTGCGGATGAGCTAGAACGCAGACAAAAACTGTACAACCTTCTACAGCCCGTGATGAATCTGTAAGTGATTTACCCCTTGGGTTAGTATACTATTATAACATGCATGAATCTTTAATTTATGAAATGTTTCATACATCGAATTTGGTCTAGTATATAAGGACTAAATTTGGTGTAGAATAACCCCTTTTAAAGCAACTTTTTTTCTTTCTAAAATTAACATTAGACTTATGGAGAAAAGTAGTGAGAGAGATTGTAACAAGAGAAATGATTTTGGGTTATTCATGGACTTTTAAACAGGTATGTGCCTGGTTTAGATAAGGGGAAGGGATTGTACTTTCTATTTATCAAGGCAGAAACGAAGACGCCTAGTGGCCTTGTTGCACGTCCAGTCCTAACAAGTTACTACAAAAGTGAACAATTCAAGACAAGGCCATACGATCCATACAATGTGTATACAAGCCCCAACGAGACCATTCTCTGTGTCGATTCATTCCAAAGCATGTATTCCCAAATGC</genome_strand>
        <mrna_strand>AATAATCTTATTCTGCTTTAAATTCTCACTTCCACTTTTTTTAAATAATGGCTATTGTTTCTGGTCTTTCATCTCCTCTTGGTCCTCCGGCATGTGAAAAAGATGCCAAGGTCCTTCAGTTTATCGATGACATGACTAAAAATATTGATCCTGAACAAGTGAAAGTATTGGCTGAAATATTAACCCGAAATGCCAATACTGAGTACCTCCGGAGGTTCAACATTAATGGTGCTATTGACCGTGAAACTTTCAAGTCTAAGGTCCCCGTTGTTACATACGAGGATCTTAAACCTGATATTGATCGTATTGCTAATGGTGATCGTTCTCCCATTTTCTCATCACACCCTATCTCCGAATTCCTTACCAG...................................................................................................................................................................................TTCGGGGACGTCTGCTGGAGAGAGAAAACTGATGCCCACAATTGCGGATGAGCTAGAACGCAGACAAAAACTGTACAACCTTCTACAGCCCGTGATGAATCT.............................................................................................................................................................................................................................................GTATGTGCCTGGTTTAGATAAGGGGAAGGGATTGTACTTTCTATTTATNCAGGCAGAAACGAAGACGCCTAGTGGCCTTGTTGCACGTCCAGTCCTAACAAGTTACTACAAAAGTGAACAATTCAAGACAAGGCCATACGATCCATACAATGTGTATACAAGCCCCAACGAGACCATTCTCTGTGTCGATTCATTCCAAAGCATGTATTCCC-AATGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0017H17-A4Bcr/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E279855" ref_strand="+" ref_description="SGN-E279855 [cLER-8-N21]">
      <seq>gagaccattctctgtgtcgattcattccaaagcatgtattcccaaatgctttgtggccttctcatgagagaagaagtcctccgagttggtgctgtttttgcctctggcttactccgtgccatccgttttcttcaactcaattggaagcaattgtctcaggatatcgcgtctggaactctaaaccctagagtttcagacccgtctatccgaaattgcatttcccaaatactcaaaccaaatccccaacttgctgagtttgttgctaaggaatgtgaaggcgaaaattgggaaggaatcattactagaatttggccaaacacaaagcaccttgatgtgatagtcacaggtgcaatggctcaatatatacctactgtggattattatagtgggggtcta</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0017H17-A4Bcr/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02SLe0017H17.1" temp_strand="+" temp_description="C02SLe0017H17.1  AC215447.2 htgs_phase:3 submitted_to_sgn_as:C02SLe0017H17 sequenced_by:kribb upload_account_name:korea">
        <position start="79589" stop="80584"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="79889" g_stop="80284" g_length="396"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="396" r_length="396" r_score="0.997"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLe0017H17.1" gen_strand="+" ref_id="SGN-E279855" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>396</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0017H17.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E279855" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="79889" e_stop="80284"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAGACCATTCTCTGTGTCGATTCATTCCAAAGCATGTATTCCCAAATGCTTTGTGGCCTTCTCATGAGAGAAGAAGTCCTCCGAGTTGGTGCTGTTTTTGCCTCTGGCTTACTCCGTGCCATCCGTTTTCTTCAACTCAATTGGAAGCAATTGTCTCAGGATATCGCGTCTGGAACTCTAAACCCTAGAGTTTCAGACCCGTCTATCCGAAATTGCATTTCCCAAATACTCAAACCAAATCCCCAACTTGCTGAGTTTGTTGCTAAGGAATGTGAAGGCGAAAATTGGGAAGGAATCATTACTAGAATTTGGCCAAACACAAAGCACCTTGATGTGATAGTCACAGGTGCAATGGCTCAATATATACCTACTTTGGATTATTATAGTGGGGGTCTA</genome_strand>
        <mrna_strand>GAGACCATTCTCTGTGTCGATTCATTCCAAAGCATGTATTCCCAAATGCTTTGTGGCCTTCTCATGAGAGAAGAAGTCCTCCGAGTTGGTGCTGTTTTTGCCTCTGGCTTACTCCGTGCCATCCGTTTTCTTCAACTCAATTGGAAGCAATTGTCTCAGGATATCGCGTCTGGAACTCTAAACCCTAGAGTTTCAGACCCGTCTATCCGAAATTGCATTTCCCAAATACTCAAACCAAATCCCCAACTTGCTGAGTTTGTTGCTAAGGAATGTGAAGGCGAAAATTGGGAAGGAATCATTACTAGAATTTGGCCAAACACAAAGCACCTTGATGTGATAGTCACAGGTGCAATGGCTCAATATATACCTACTGTGGATTATTATAGTGGGGGTCTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0017H17-A4Bcr/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E711073" ref_strand="+" ref_description="SGN-E711073 [FA57DG04]">
      <seq>ccgagttggtgctgtttttgcctctggcttactccgtgccatccgttttcttcaactcaattggaagcaattgtctcaggatatcgcgtctggaactctaaaccctagagtttcagacccgtctatccgaaattgcatttcccaaatactcaaaccaaatccccaacttgctgagtttgttgctaaggaatgtgaaggcgaaaattgggaaggaatcattactagaatttggccaaacacaaagcaccttgatgtgatagtcacaggtgcaatggctcaatatatacctactttggattattatagtgggggtctaccaaaggtgtgtacaatgtacgcatcatccgaatgttattttggactcaatttaaatccattgtgtaagccttgtgaagtttgttacaccattatgccaaatatgggttactttgaattcatccctcatgacccccccccccccccccaaatctctcgtgactcacccccacatctagtagaccttgctgacgtggaaattggaaaagaatacgagctcgtgatcacaacttacgccggactatgccgttaccgagttggtgacatactccaggtcaccgggttccacaactcggcccctcagttcaaattcgtcaggcgaaaaaacgtgctgttgagtattgattctgataaaaccgatgagtccgaattacacaccgcgattgaaaatgcgaccgcacttttgcgcccgtatgatactactttagttgagtacaccagttttgccgatactaacacaattcccgggccattacgttatttactg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0017H17-A4Bcr/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02SLe0017H17.1" temp_strand="+" temp_description="C02SLe0017H17.1  AC215447.2 htgs_phase:3 submitted_to_sgn_as:C02SLe0017H17 sequenced_by:kribb upload_account_name:korea">
        <position start="79669" stop="81069"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="79969" g_stop="80769" g_length="801"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="802" r_length="802" r_score="0.984"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLe0017H17.1" gen_strand="+" ref_id="SGN-E711073" ref_strand="+">
        <total_alignment_score>0.984</total_alignment_score>
        <cumulative_length_of_scored_exons>801</cumulative_length_of_scored_exons>
        <coverage percentage="0.999" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0017H17.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E711073" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="79969" e_stop="80769"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCGAGTTGGTGCTGTTTTTGCCTCTGGCTTACTCCGTGCCATCCGTTTTCTTCAACTCAATTGGAAGCAATTGTCTCAGGATATCGCGTCTGGAACTCTAAACCCTAGAGTTTCAGACCCGTCTATCCGAAATTGCATTTCCCAAATACTCAAACCAAATCCCCAACTTGCTGAGTTTGTTGCTAAGGAATGTGAAGGCGAAAATTGGGAAGGAATCATTACTAGAATTTGGCCAAACACAAAGCACCTTGATGTGATAGTCACAGGTGCAATGGCTCAATATATACCTACTTTGGATTATTATAGTGGGGGTCTACCAAAGGTGTGTACAATGTACGCATCATCCGAATGTTATTTTGGACTCAATTTAAATCCATTGTGTAAGCCTTGTGAAGTTTGTTACACCATTATGCCAAATATGGGTTACTTTGAATTCATCCCTCATGACCCGGTCAACCCGGTTCAAATCTCTCGTGACTCACCCCCACATCTAGTAGACCTTGCTGACGTGGAAATTGGAAAAGAATACGAGCTCGTGATCACAACTTACGCCGGACTATGCCGTTACCGAGTTGGTGACATACTCCAGGTCACCGGGTTCCACAACTCGGCCCCTCAGTTCAAATTCGTCAGGCGAAAAAACGTGCTGTTGAGTATTGATTCTGATAAAACCGATGAGTCCGAATTACACACCGCGATTGAAAATGCGACCGCACTTTTGCGCCCGTATGATACTACTTTAGTTGAGTACACCAGTTTTGCCGATACTAAGACAATT-CCGGGGCATTACGTTATTTACTG</genome_strand>
        <mrna_strand>CCGAGTTGGTGCTGTTTTTGCCTCTGGCTTACTCCGTGCCATCCGTTTTCTTCAACTCAATTGGAAGCAATTGTCTCAGGATATCGCGTCTGGAACTCTAAACCCTAGAGTTTCAGACCCGTCTATCCGAAATTGCATTTCCCAAATACTCAAACCAAATCCCCAACTTGCTGAGTTTGTTGCTAAGGAATGTGAAGGCGAAAATTGGGAAGGAATCATTACTAGAATTTGGCCAAACACAAAGCACCTTGATGTGATAGTCACAGGTGCAATGGCTCAATATATACCTACTTTGGATTATTATAGTGGGGGTCTACCAAAGGTGTGTACAATGTACGCATCATCCGAATGTTATTTTGGACTCAATTTAAATCCATTGTGTAAGCCTTGTGAAGTTTGTTACACCATTATGCCAAATATGGGTTACTTTGAATTCATCCCTCATGACCCCCCCCCCCCCCCCCAAATCTCTCGTGACTCACCCCCACATCTAGTAGACCTTGCTGACGTGGAAATTGGAAAAGAATACGAGCTCGTGATCACAACTTACGCCGGACTATGCCGTTACCGAGTTGGTGACATACTCCAGGTCACCGGGTTCCACAACTCGGCCCCTCAGTTCAAATTCGTCAGGCGAAAAAACGTGCTGTTGAGTATTGATTCTGATAAAACCGATGAGTCCGAATTACACACCGCGATTGAAAATGCGACCGCACTTTTGCGCCCGTATGATACTACTTTAGTTGAGTACACCAGTTTTGCCGATACTAACACAATTCCCGGGCCATTACGTTATTTACTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0017H17-A4Bcr/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E539159" ref_strand="+" ref_description="SGN-E539159 [TUS-58-M11](-)">
      <seq>aaaaaacgtgctgttgagtattgattctgataaaaccgatgagtccgaattacacaccgcgattgaaaatgcgaccgcatttttgcgcccgtatgatactactttagttgagtacaccagttttgccgatactaagacaattccggggcattacgttatttactgggagttacttgttaaggacccggctaacccacccagtgatgacgtgttgaaccagtgctgccttgcgatggaacaatcattgaactcggtgtacaggcagtgtcgcgtcgcagacaattcaatcgggccactggagataagagtggtgaaaaacgggacatttgaagaacttatggattatgcaatttcgagaggtgcatcaattaatcagtataaggcaccaaggtgtgttaattttactcctattgttgaacttttggactccagggtgatttctgtgaatttcagtccaaaagctcctcactggactccagaacgacgacgttgaacactaggcatgctattttatcaagtcaagtagtgttgttagtgtgtgaaaaaaaaaaatgtttagacagtggaccaaagaaagaaaaaaaaagaatcagtactataattcttcgtctctgtctgatcactttaatttgctttctttttgtgaatctgatatctgttgttggatgtgaaaaaagaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0017H17-A4Bcr/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02SLe0017H17.1" temp_strand="+" temp_description="C02SLe0017H17.1  AC215447.2 htgs_phase:3 submitted_to_sgn_as:C02SLe0017H17 sequenced_by:kribb upload_account_name:korea">
        <position start="80305" stop="81578"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="80605" g_stop="81285" g_length="681"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="681" r_length="681" r_score="0.985"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLe0017H17.1" gen_strand="+" ref_id="SGN-E539159" ref_strand="+">
        <total_alignment_score>0.985</total_alignment_score>
        <cumulative_length_of_scored_exons>681</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0017H17.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E539159" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="80605" e_stop="81285"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAAAACGTGCTGTTGAGTATTGATTCTGATAAAACCGATGAGTCCGAATTACACACCGCGATTGAAAATGCGACCGCACTTTTGCGCCCGTATGATACTACTTTAGTTGAGTACACCAGTTTTGCCGATACTAAGACAATTCCGGGGCATTACGTTATTTACTGGGAGTTACTTGTTAAGGACCCGGCTAACCCACCCAGTGATGACGTGTTGAACCAGTGCTGCCTTGCGATGGAACAATCATTGAACTCGGTGTACAGGCAGTGTCGCGTCGCAGACAATTCAATCGGGCCACTGGAGATAAGAGTGGTGAAAAACGGGACATTTGAAGAACTTATGGATTATGCAATTTCGAGAGGTGCATCAATTAATCAGTATAAGGCACCAAGGTGTGTTAATTTTACTCCTATTGTTGAACTTTTGGACTCCAGGGTGATTTCTGTGAATTTCAGTCCAAAAGCTCCTCACTGGACTCCAGAACGACGACGTTGAACACTAGGCATGCTATTTTATCAAGTCAAGTAGTGTTGTTAGTGTGTG-AAAAAAAAAATGTTTAGACAGTGGACCAAAGAAAGAAAAAAAAAGAATCAGTACTATAATTCTTCGTCTCTGTCTGATCACTTTAATTTGCTTTCTTTTTGTGAATCTGATATCTGTTGTTGGATGTTGAATATTGTTCA</genome_strand>
        <mrna_strand>AAAAAACGTGCTGTTGAGTATTGATTCTGATAAAACCGATGAGTCCGAATTACACACCGCGATTGAAAATGCGACCGCATTTTTGCGCCCGTATGATACTACTTTAGTTGAGTACACCAGTTTTGCCGATACTAAGACAATTCCGGGGCATTACGTTATTTACTGGGAGTTACTTGTTAAGGACCCGGCTAACCCACCCAGTGATGACGTGTTGAACCAGTGCTGCCTTGCGATGGAACAATCATTGAACTCGGTGTACAGGCAGTGTCGCGTCGCAGACAATTCAATCGGGCCACTGGAGATAAGAGTGGTGAAAAACGGGACATTTGAAGAACTTATGGATTATGCAATTTCGAGAGGTGCATCAATTAATCAGTATAAGGCACCAAGGTGTGTTAATTTTACTCCTATTGTTGAACTTTTGGACTCCAGGGTGATTTCTGTGAATTTCAGTCCAAAAGCTCCTCACTGGACTCCAGAACGACGACGTTGAACACTAGGCATGCTATTTTATCAAGTCAAGTAGTGTTGTTAGTGTGTGAAAAAAAAAAATGTTTAGACAGTGGACCAAAGAAAGAAAAAAAAAGAATCAGTACTATAATTCTTCGTCTCTGTCTGATCACTTTAATTTGCTTTCTTTTTGTGAATCTGATATCTGTTGTTGGATG-TGAAAAAAGAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0017H17-A4Bcr/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E350921" ref_strand="+" ref_description="SGN-E350921 [cTOS-7-N13]">
      <seq>gattctgataaaaccgatgagtccgaattacacaccgcgattgaaaatgcgaccgcacttttgcgcccgtatgatactactttagttgagtacaccagttttgccgatactaagacaattccggggcattacgttatttactgggagttacttgttaaggacccggctaacccacccagtgatgacgtgttgaaccagtgctgccttgcgatggaacaatcattgaactcggtgtacaggcagtgtcgcgtcgcagacaattcaatcgggccactggagataagagtggtgaaaaacgggacatttgaagaacttatggattatgcaatttcgagaggtgcatcaattaatcagtataaggcaccaaggtgtgttaattttactcctattgttgaacttttggactccagggtgatttctgtgaatttcagtccaaaagctcctcactggactccagaacgacgacgttgaacactaggcatgctattttatcaagtcaagtagtgttgttagtgtgtgaaaaaaaaaatgtttagacagtggaccaaagaaagaaaaaaaaagaatccgtactataattcttcgtctctgtctgatcactttaatttgctttctttttgtgaatctgatatc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0017H17-A4Bcr/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02SLe0017H17.1" temp_strand="+" temp_description="C02SLe0017H17.1  AC215447.2 htgs_phase:3 submitted_to_sgn_as:C02SLe0017H17 sequenced_by:kribb upload_account_name:korea">
        <position start="80327" stop="81559"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="80627" g_stop="81259" g_length="633"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="633" r_length="633" r_score="0.998"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLe0017H17.1" gen_strand="+" ref_id="SGN-E350921" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>633</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0017H17.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E350921" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="80627" e_stop="81259"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GATTCTGATAAAACCGATGAGTCCGAATTACACACCGCGATTGAAAATGCGACCGCACTTTTGCGCCCGTATGATACTACTTTAGTTGAGTACACCAGTTTTGCCGATACTAAGACAATTCCGGGGCATTACGTTATTTACTGGGAGTTACTTGTTAAGGACCCGGCTAACCCACCCAGTGATGACGTGTTGAACCAGTGCTGCCTTGCGATGGAACAATCATTGAACTCGGTGTACAGGCAGTGTCGCGTCGCAGACAATTCAATCGGGCCACTGGAGATAAGAGTGGTGAAAAACGGGACATTTGAAGAACTTATGGATTATGCAATTTCGAGAGGTGCATCAATTAATCAGTATAAGGCACCAAGGTGTGTTAATTTTACTCCTATTGTTGAACTTTTGGACTCCAGGGTGATTTCTGTGAATTTCAGTCCAAAAGCTCCTCACTGGACTCCAGAACGACGACGTTGAACACTAGGCATGCTATTTTATCAAGTCAAGTAGTGTTGTTAGTGTGTGAAAAAAAAAATGTTTAGACAGTGGACCAAAGAAAGAAAAAAAAAGAATCAGTACTATAATTCTTCGTCTCTGTCTGATCACTTTAATTTGCTTTCTTTTTGTGAATCTGATATC</genome_strand>
        <mrna_strand>GATTCTGATAAAACCGATGAGTCCGAATTACACACCGCGATTGAAAATGCGACCGCACTTTTGCGCCCGTATGATACTACTTTAGTTGAGTACACCAGTTTTGCCGATACTAAGACAATTCCGGGGCATTACGTTATTTACTGGGAGTTACTTGTTAAGGACCCGGCTAACCCACCCAGTGATGACGTGTTGAACCAGTGCTGCCTTGCGATGGAACAATCATTGAACTCGGTGTACAGGCAGTGTCGCGTCGCAGACAATTCAATCGGGCCACTGGAGATAAGAGTGGTGAAAAACGGGACATTTGAAGAACTTATGGATTATGCAATTTCGAGAGGTGCATCAATTAATCAGTATAAGGCACCAAGGTGTGTTAATTTTACTCCTATTGTTGAACTTTTGGACTCCAGGGTGATTTCTGTGAATTTCAGTCCAAAAGCTCCTCACTGGACTCCAGAACGACGACGTTGAACACTAGGCATGCTATTTTATCAAGTCAAGTAGTGTTGTTAGTGTGTGAAAAAAAAAATGTTTAGACAGTGGACCAAAGAAAGAAAAAAAAAGAATCCGTACTATAATTCTTCGTCTCTGTCTGATCACTTTAATTTGCTTTCTTTTTGTGAATCTGATATC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0017H17-A4Bcr/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E353676" ref_strand="+" ref_description="SGN-E353676 [cTOS-10-N5]">
      <seq>gattctgataaaaccgatgagtccgaattacacaccgcgattgaaaatgcgaccgcacttttgcgcccgtatgatactactttagttgagtacaccagttttgccgatactaagacaattccggggcattacgttatttactgggagttacttgttaaggacccggctaacccacccagtgatgacgtgttgaaccagtgctgccttgcgatggaacaatcattgaactcggtgtacaggcagtgtcgcgtcgcagacaattcaatcgggccactggagataagagtggtgaaaaacgggacatttgaagaacttatggattatgcaatttcgagaggtgcatcaattaatcagtataaggcaccaaggtgtgttaattttactcctattgttgaacttttggactccagggtgatttctgtgaatttcagtccaaaagctcctcactggactccagaacgacgacgttgaacactaggcatgctattttatcaagtcaagtagtgttgttagtgtgtgaaaaaaaaatgtttagacagtggacccaagaaagaaaaaaaagaatccgnactataattcttcgnctctgtctgatcactttaatttgctttcttttt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0017H17-A4Bcr/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02SLe0017H17.1" temp_strand="+" temp_description="C02SLe0017H17.1  AC215447.2 htgs_phase:3 submitted_to_sgn_as:C02SLe0017H17 sequenced_by:kribb upload_account_name:korea">
        <position start="80327" stop="81545"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="80627" g_stop="81245" g_length="619"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="617" r_length="617" r_score="0.990"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLe0017H17.1" gen_strand="+" ref_id="SGN-E353676" ref_strand="+">
        <total_alignment_score>0.990</total_alignment_score>
        <cumulative_length_of_scored_exons>619</cumulative_length_of_scored_exons>
        <coverage percentage="1.003" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0017H17.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E353676" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="80627" e_stop="81245"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GATTCTGATAAAACCGATGAGTCCGAATTACACACCGCGATTGAAAATGCGACCGCACTTTTGCGCCCGTATGATACTACTTTAGTTGAGTACACCAGTTTTGCCGATACTAAGACAATTCCGGGGCATTACGTTATTTACTGGGAGTTACTTGTTAAGGACCCGGCTAACCCACCCAGTGATGACGTGTTGAACCAGTGCTGCCTTGCGATGGAACAATCATTGAACTCGGTGTACAGGCAGTGTCGCGTCGCAGACAATTCAATCGGGCCACTGGAGATAAGAGTGGTGAAAAACGGGACATTTGAAGAACTTATGGATTATGCAATTTCGAGAGGTGCATCAATTAATCAGTATAAGGCACCAAGGTGTGTTAATTTTACTCCTATTGTTGAACTTTTGGACTCCAGGGTGATTTCTGTGAATTTCAGTCCAAAAGCTCCTCACTGGACTCCAGAACGACGACGTTGAACACTAGGCATGCTATTTTATCAAGTCAAGTAGTGTTGTTAGTGTGTGAAAAAAAAAATGTTTAGACAGTGGACCAAAGAAAGAAAAAAAAAGAATCAGTACTATAATTCTTCGTCTCTGTCTGATCACTTTAATTTGCTTTCTTTTT</genome_strand>
        <mrna_strand>GATTCTGATAAAACCGATGAGTCCGAATTACACACCGCGATTGAAAATGCGACCGCACTTTTGCGCCCGTATGATACTACTTTAGTTGAGTACACCAGTTTTGCCGATACTAAGACAATTCCGGGGCATTACGTTATTTACTGGGAGTTACTTGTTAAGGACCCGGCTAACCCACCCAGTGATGACGTGTTGAACCAGTGCTGCCTTGCGATGGAACAATCATTGAACTCGGTGTACAGGCAGTGTCGCGTCGCAGACAATTCAATCGGGCCACTGGAGATAAGAGTGGTGAAAAACGGGACATTTGAAGAACTTATGGATTATGCAATTTCGAGAGGTGCATCAATTAATCAGTATAAGGCACCAAGGTGTGTTAATTTTACTCCTATTGTTGAACTTTTGGACTCCAGGGTGATTTCTGTGAATTTCAGTCCAAAAGCTCCTCACTGGACTCCAGAACGACGACGTTGAACACTAGGCATGCTATTTTATCAAGTCAAGTAGTGTTGTTAGTGTGTG-AAAAAAAAATGTTTAGACAGTGGACCCAAGAAAG-AAAAAAAAGAATCCGNACTATAATTCTTCGNCTCTGTCTGATCACTTTAATTTGCTTTCTTTTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
    <total_number_ESTs_reported>90</total_number_ESTs_reported>
    </alignment_module>
  <PGL_module xmlns="http://www.genomethreader.org/GTH_output/PGL_module/">
    <predicted_gene_location>
      <PGL_line PGL_serial="1" PGL_strand="-" PGL_start="2031" PGL_stop="407"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="2031" e_stop="1991"/>
            <exon e_start="1701" e_stop="1589"/>
            <exon e_start="1201" e_stop="963"/>
            <exon e_start="782" e_stop="677"/>
            <exon e_start="413" e_stop="407"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.991" acc_prob="0.997" e_score="1.000"/>
          <exon-intron don_prob="0.946" acc_prob="0.956" e_score="1.000"/>
          <exon-intron don_prob="0.997" acc_prob="1.000" e_score="1.000"/>
          <exon-intron don_prob="0.997" acc_prob="0.997" e_score="1.000"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="2031" e_stop="1991" e_length="41"/>
          </exon>
          <intron i_serial="1" don_prob="0.991" acc_prob="0.997">
            <gDNA_intron_boundary i_start="1990" i_stop="1702" i_length="289"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="1701" e_stop="1589" e_length="113"/>
          </exon>
          <intron i_serial="2" don_prob="0.946" acc_prob="0.956">
            <gDNA_intron_boundary i_start="1588" i_stop="1202" i_length="387"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="1201" e_stop="963" e_length="239"/>
          </exon>
          <intron i_serial="3" don_prob="0.997" acc_prob="1.000">
            <gDNA_intron_boundary i_start="962" i_stop="783" i_length="180"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="782" e_stop="677" e_length="106"/>
          </exon>
          <intron i_serial="4" don_prob="0.997" acc_prob="0.997">
            <gDNA_intron_boundary i_start="676" i_stop="414" i_length="263"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="413" e_stop="407" e_length="7"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="2031" stop="1991"/>
              <exon start="1701" stop="1589"/>
              <exon start="1201" stop="963"/>
              <exon start="782" stop="677"/>
              <exon start="413" stop="407"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E291294" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="1" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>TGGTCCATTCTTTTTCAAATGGCCTTTCTTTAGTACTACAG : CTTGCAGAGGATCAATTTACCGAGCATTGGGCCTCATGGTAGCTGCATCACCTTGTGCATTAGCTGTGGCACCATTGGCTTACGCAACTGCCATCAGTGCTTGTGCAAAAAGG : GGCATATTGCTTAAAGGTGGACAGGTACTTGATGCCTTGGCTTCATGCCATAGTATTGCATTTGACAAAACTGGTACATTGACAACAGGGGAGTTCATGTGCAAAGCAATTGAACCGATACATGGACATGCTAAGAGTGTTGGAAAAGGATTTGCTTCTTGTTGTAACCCCAGTTGTGAGAAAGAAGCACTTGCTGTTGCAGCTGCAATGGAGAGGGGTACAACTCACCCAATTGGAAG : GGCTGTTGTAGATCATAGCACAGGCAAAGACCTTCCTTCAATTTCAGTTGAAAGTTTTGAGAATTTACCTGGTAGAGGCATAATTGCAACATTATCGAGCTTTGAG : CCAAGAC</gDNA_template>
            <first_frame> W  S  I  L  F  Q  M  A  F  L  *  Y  Y  S :   L  Q  R  I  N  L  P  S  I  G  P  H  G  S  C  I  T  L  C  I  S  C  G  T  I  G  L  R  N  C  H  Q  C  L  C  K  K   : G  H  I  A  *  R  W  T  G  T  *  C  L  G  F  M  P  *  Y  C  I  *  Q  N  W  Y  I  D  N  R  G  V  H  V  Q  S  N  *  T  D  T  W  T  C  *  E  C  W  K  R  I  C  F  L  L  *  P  Q  L  *  E  R  S  T  C  C  C  S  C  N  G  E  G  Y  N  S  P  N  W  K  :  G  C  C  R  S  *  H  R  Q  R  P  S  F  N  F  S  *  K  F  *  E  F  T  W  *  R  H  N  C  N  I  I  E  L  *   : A  K   </first_frame>
            <second_frame>  G  P  F  F  F  K  W  P  F  F  S  T  T   : A  C  R  G  S  I  Y  R  A  L  G  L  M  V  A  A  S  P  C  A  L  A  V  A  P  L  A  Y  A  T  A  I  S  A  C  A  K  R  :  G  I  L  L  K  G  G  Q  V  L  D  A  L  A  S  C  H  S  I  A  F  D  K  T  G  T  L  T  T  G  E  F  M  C  K  A  I  E  P  I  H  G  H  A  K  S  V  G  K  G  F  A  S  C  C  N  P  S  C  E  K  E  A  L  A  V  A  A  A  M  E  R  G  T  T  H  P  I  G  R :   A  V  V  D  H  S  T  G  K  D  L  P  S  I  S  V  E  S  F  E  N  L  P  G  R  G  I  I  A  T  L  S  S  F  E  :  P  R  </second_frame>
            <third_frame>   V  H  S  F  S  N  G  L  S  L  V  L  Q  :  L  A  E  D  Q  F  T  E  H  W  A  S  W  *  L  H  H  L  V  H  *  L  W  H  H  W  L  T  Q  L  P  S  V  L  V  Q  K  G :   A  Y  C  L  K  V  D  R  Y  L  M  P  W  L  H  A  I  V  L  H  L  T  K  L  V  H  *  Q  Q  G  S  S  C  A  K  Q  L  N  R  Y  M  D  M  L  R  V  L  E  K  D  L  L  L  V  V  T  P  V  V  R  K  K  H  L  L  L  Q  L  Q  W  R  G  V  Q  L  T  Q  L  E   : G  L  L  *  I  I  A  Q  A  K  T  F  L  Q  F  Q  L  K  V  L  R  I  Y  L  V  E  A  *  L  Q  H  Y  R  A  L  S :   Q  D </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02SLe0017H17.1" strand="-"/>
                <serials PGL_serial="1" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="2030" stop="1991"/>
                    <exon start="1701" stop="1589"/>
                    <exon start="1201" stop="963"/>
                    <exon start="782" stop="677"/>
                    <exon start="413" stop="408"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>504</number_coding_nucleotides>
                  <number_encoded_amino_acids>168</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>GPFFFKWPFFSTTACRGSIYRALGLMVAASPCALAVAPLAYATAISACAKRGILLKGGQVLDALASCHSIAFDKTGTLTTGEFMCKAIEPIHGHAKSVGKGFASCCNPSCEKEALAVAAAMERGTTHPIGRAVVDHSTGKDLPSISVESFENLPGRGIIATLSSFEPR</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="2" PGL_strand="-" PGL_start="5649" PGL_stop="4300"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="5649" e_stop="5076"/>
            <exon e_start="4644" e_stop="4494"/>
            <exon e_start="4420" e_stop="4300"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.998" acc_prob="0.996" e_score="0.997"/>
          <exon-intron don_prob="0.987" acc_prob="0.996" e_score="1.000"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.997">
            <gDNA_exon_boundary e_start="5649" e_stop="5076" e_length="574"/>
          </exon>
          <intron i_serial="1" don_prob="0.998" acc_prob="0.996">
            <gDNA_intron_boundary i_start="5075" i_stop="4645" i_length="431"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="4644" e_stop="4494" e_length="151"/>
          </exon>
          <intron i_serial="2" don_prob="0.987" acc_prob="0.996">
            <gDNA_intron_boundary i_start="4493" i_stop="4421" i_length="73"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="4420" e_stop="4300" e_length="121"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="5649" stop="5076"/>
              <exon start="4644" stop="4494"/>
              <exon start="4420" stop="4300"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E707440" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="5649" stop="5076"/>
              <exon start="4644" stop="4494"/>
              <exon start="4420" stop="4340"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E707526" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="2" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>AGCAATTTGCCCCAGTATTATTGAGAGAGAGAAAGAAGGGAACAAAAAATGCATTTTCAGTGAAAATATTCGGCAAAAAATGGAAGCTCTGCGTCTTTCAACTTCCTTCTCAGGGATCAATTGTTCAATCTACAAATCTACAAGGAGACTCAAAGTCAACCGGAATCTCTTGTTCTCTTCATTGAAACCCATATCTTCAGTTCCAATTCGAAGCTCCGCTCAGTTCCGTGGACGCATCCACTGTTCTGCTTGCAGCTGTTCCTCTCACAGTCACCAACATCATCATCATCACCATGACCATAGTCATGATCATCACAATCACCATCACCACCACCACCACCATGGTCATGACGAAGGCGACGGGAAGCTCACGAAATTTCAGGAGGTATTTCTCAAGTTCGCAAATGCTATCAGATGGACCCAGTTGGCGAATTACTTGAGAGAGAATTTAGAGCTTTGCTGTTGCTCAGCGGTTTTGTTTATTGCTGCTGCTGTTTGTCCTTACTTTCTTCCCGGGCCCGCTGTACTGCCTCTCCAGCGTATTTTCGCTCTCATTGCCTTTCCTCTCGTTGGG : GTCTCAGCATCACTTGATGCATTAGTGGACATTACTGGTGGTAAAATCAATATTCATGTACTCATGGCTCTCGCAGCTTTTGCATCAGTTTTTATGGGGAACGTATTGGAAGGTGGCTTGCTTCTTGCAATGTTCAATTTAGCTCACATAG : CTGAAGAGTATTTCACTAGTCGCTCCAAGGGTGACGTAAAGGAATTAAAAGAAAACCATCCTGAATTTGCTCTTGTGCTGCACGTAGACAATCAAACTTTGCCTAGTTTCACTGACTTGTC</gDNA_template>
            <first_frame> S  N  L  P  Q  Y  Y  *  E  R  E  R  R  E  Q  K  M  H  F  Q  *  K  Y  S  A  K  N  G  S  S  A  S  F  N  F  L  L  R  D  Q  L  F  N  L  Q  I  Y  K  E  T  Q  S  Q  P  E  S  L  V  L  F  I  E  T  H  I  F  S  S  N  S  K  L  R  S  V  P  W  T  H  P  L  F  C  L  Q  L  F  L  S  Q  S  P  T  S  S  S  S  P  *  P  *  S  *  S  S  Q  S  P  S  P  P  P  P  P  W  S  *  R  R  R  R  E  A  H  E  I  S  G  G  I  S  Q  V  R  K  C  Y  Q  M  D  P  V  G  E  L  L  E  R  E  F  R  A  L  L  L  L  S  G  F  V  Y  C  C  C  C  L  S  L  L  S  S  R  A  R  C  T  A  S  P  A  Y  F  R  S  H  C  L  S  S  R  W   : G  L  S  I  T  *  C  I  S  G  H  Y  W  W  *  N  Q  Y  S  C  T  H  G  S  R  S  F  C  I  S  F  Y  G  E  R  I  G  R  W  L  A  S  C  N  V  Q  F  S  S  H  S :   *  R  V  F  H  *  S  L  Q  G  *  R  K  G  I  K  R  K  P  S  *  I  C  S  C  A  A  R  R  Q  S  N  F  A  *  F  H  *  L  V </first_frame>
            <second_frame>  A  I  C  P  S  I  I  E  R  E  K  E  G  N  K  K  C  I  F  S  E  N  I  R  Q  K  M  E  A  L  R  L  S  T  S  F  S  G  I  N  C  S  I  Y  K  S  T  R  R  L  K  V  N  R  N  L  L  F  S  S  L  K  P  I  S  S  V  P  I  R  S  S  A  Q  F  R  G  R  I  H  C  S  A  C  S  C  S  S  H  S  H  Q  H  H  H  H  H  H  D  H  S  H  D  H  H  N  H  H  H  H  H  H  H  H  G  H  D  E  G  D  G  K  L  T  K  F  Q  E  V  F  L  K  F  A  N  A  I  R  W  T  Q  L  A  N  Y  L  R  E  N  L  E  L  C  C  C  S  A  V  L  F  I  A  A  A  V  C  P  Y  F  L  P  G  P  A  V  L  P  L  Q  R  I  F  A  L  I  A  F  P  L  V  G  :  V  S  A  S  L  D  A  L  V  D  I  T  G  G  K  I  N  I  H  V  L  M  A  L  A  A  F  A  S  V  F  M  G  N  V  L  E  G  G  L  L  L  A  M  F  N  L  A  H  I   : A  E  E  Y  F  T  S  R  S  K  G  D  V  K  E  L  K  E  N  H  P  E  F  A  L  V  L  H  V  D  N  Q  T  L  P  S  F  T  D  L   </second_frame>
            <third_frame>   Q  F  A  P  V  L  L  R  E  R  K  K  G  T  K  N  A  F  S  V  K  I  F  G  K  K  W  K  L  C  V  F  Q  L  P  S  Q  G  S  I  V  Q  S  T  N  L  Q  G  D  S  K  S  T  G  I  S  C  S  L  H  *  N  P  Y  L  Q  F  Q  F  E  A  P  L  S  S  V  D  A  S  T  V  L  L  A  A  V  P  L  T  V  T  N  I  I  I  I  T  M  T  I  V  M  I  I  T  I  T  I  T  T  T  T  T  M  V  M  T  K  A  T  G  S  S  R  N  F  R  R  Y  F  S  S  S  Q  M  L  S  D  G  P  S  W  R  I  T  *  E  R  I  *  S  F  A  V  A  Q  R  F  C  L  L  L  L  L  F  V  L  T  F  F  P  G  P  L  Y  C  L  S  S  V  F  S  L  S  L  P  F  L  S  L  G :   S  Q  H  H  L  M  H  *  W  T  L  L  V  V  K  S  I  F  M  Y  S  W  L  S  Q  L  L  H  Q  F  L  W  G  T  Y  W  K  V  A  C  F  L  Q  C  S  I  *  L  T  *  :  L  K  S  I  S  L  V  A  P  R  V  T  *  R  N  *  K  K  T  I  L  N  L  L  L  C  C  T  *  T  I  K  L  C  L  V  S  L  T  C  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02SLe0017H17.1" strand="-"/>
                <serials PGL_serial="2" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="5648" stop="5076"/>
                    <exon start="4644" stop="4494"/>
                    <exon start="4420" stop="4302"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>843</number_coding_nucleotides>
                  <number_encoded_amino_acids>281</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>AICPSIIEREKEGNKKCIFSENIRQKMEALRLSTSFSGINCSIYKSTRRLKVNRNLLFSSLKPISSVPIRSSAQFRGRIHCSACSCSSHSHQHHHHHHDHSHDHHNHHHHHHHHGHDEGDGKLTKFQEVFLKFANAIRWTQLANYLRENLELCCCSAVLFIAAAVCPYFLPGPAVLPLQRIFALIAFPLVGVSASLDALVDITGGKINIHVLMALAAFASVFMGNVLEGGLLLAMFNLAHIAEEYFTSRSKGDVKELKENHPEFALVLHVDNQTLPSFTDL</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="3" PGL_strand="-" PGL_start="17260" PGL_stop="6632"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="17260" e_stop="16984"/>
            <exon e_start="15389" e_stop="15336"/>
            <exon e_start="15148" e_stop="15135"/>
            <exon e_start="13885" e_stop="13740"/>
            <exon e_start="13130" e_stop="13095"/>
            <exon e_start="11131" e_stop="11091"/>
            <exon e_start="10553" e_stop="10452"/>
            <exon e_start="9760" e_stop="9681"/>
            <exon e_start="8664" e_stop="8495"/>
            <exon e_start="8162" e_stop="8078"/>
            <exon e_start="7209" e_stop="6632"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="1.000" acc_prob="0.647" e_score="0.993"/>
          <exon-intron don_prob="0.997" acc_prob="0.989" e_score="1.000"/>
          <exon-intron don_prob="0.000" acc_prob="0.999" e_score="1.000"/>
          <exon-intron don_prob="0.996" acc_prob="0.968" e_score="1.000"/>
          <exon-intron don_prob="0.937" acc_prob="0.997" e_score="1.000"/>
          <exon-intron don_prob="0.998" acc_prob="0.995" e_score="1.000"/>
          <exon-intron don_prob="0.991" acc_prob="0.989" e_score="1.000"/>
          <exon-intron don_prob="0.972" acc_prob="0.951" e_score="1.000"/>
          <exon-intron don_prob="0.868" acc_prob="0.999" e_score="1.000"/>
          <exon-intron don_prob="0.993" acc_prob="0.999" e_score="1.000"/>
          <exon-only e_score="0.957"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.993">
            <gDNA_exon_boundary e_start="17260" e_stop="16984" e_length="277"/>
          </exon>
          <intron i_serial="1" don_prob="1.000" acc_prob="0.647">
            <gDNA_intron_boundary i_start="16983" i_stop="15390" i_length="1594"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="15389" e_stop="15336" e_length="54"/>
          </exon>
          <intron i_serial="2" don_prob="0.997" acc_prob="0.989">
            <gDNA_intron_boundary i_start="15335" i_stop="15149" i_length="187"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="15148" e_stop="15135" e_length="14"/>
          </exon>
          <intron i_serial="3" don_prob="0.000" acc_prob="0.999">
            <gDNA_intron_boundary i_start="15134" i_stop="13886" i_length="1249"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="13885" e_stop="13740" e_length="146"/>
          </exon>
          <intron i_serial="4" don_prob="0.996" acc_prob="0.968">
            <gDNA_intron_boundary i_start="13739" i_stop="13131" i_length="609"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="13130" e_stop="13095" e_length="36"/>
          </exon>
          <intron i_serial="5" don_prob="0.937" acc_prob="0.997">
            <gDNA_intron_boundary i_start="13094" i_stop="11132" i_length="1963"/>
          </intron>
          <exon e_serial="6" e_score="1.000">
            <gDNA_exon_boundary e_start="11131" e_stop="11091" e_length="41"/>
          </exon>
          <intron i_serial="6" don_prob="0.998" acc_prob="0.995">
            <gDNA_intron_boundary i_start="11090" i_stop="10554" i_length="537"/>
          </intron>
          <exon e_serial="7" e_score="1.000">
            <gDNA_exon_boundary e_start="10553" e_stop="10452" e_length="102"/>
          </exon>
          <intron i_serial="7" don_prob="0.991" acc_prob="0.989">
            <gDNA_intron_boundary i_start="10451" i_stop="9761" i_length="691"/>
          </intron>
          <exon e_serial="8" e_score="1.000">
            <gDNA_exon_boundary e_start="9760" e_stop="9681" e_length="80"/>
          </exon>
          <intron i_serial="8" don_prob="0.972" acc_prob="0.951">
            <gDNA_intron_boundary i_start="9680" i_stop="8665" i_length="1016"/>
          </intron>
          <exon e_serial="9" e_score="1.000">
            <gDNA_exon_boundary e_start="8664" e_stop="8495" e_length="170"/>
          </exon>
          <intron i_serial="9" don_prob="0.868" acc_prob="0.999">
            <gDNA_intron_boundary i_start="8494" i_stop="8163" i_length="332"/>
          </intron>
          <exon e_serial="10" e_score="1.000">
            <gDNA_exon_boundary e_start="8162" e_stop="8078" e_length="85"/>
          </exon>
          <intron i_serial="10" don_prob="0.993" acc_prob="0.999">
            <gDNA_intron_boundary i_start="8077" i_stop="7210" i_length="868"/>
          </intron>
          <exon e_serial="11" e_score="0.957">
            <gDNA_exon_boundary e_start="7209" e_stop="6632" e_length="578"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="17260" stop="16984"/>
              <exon start="15389" stop="15336"/>
              <exon start="15148" stop="15135"/>
              <exon start="13885" stop="13740"/>
              <exon start="13130" stop="13095"/>
              <exon start="11131" stop="11091"/>
              <exon start="10553" stop="10452"/>
              <exon start="9760" stop="9697"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E379501" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="17260" stop="16984"/>
              <exon start="15389" stop="15336"/>
              <exon start="15148" stop="15135"/>
              <exon start="13885" stop="13765"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E207622" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="17221" stop="16984"/>
              <exon start="15389" stop="15336"/>
              <exon start="15148" stop="15135"/>
              <exon start="13885" stop="13740"/>
              <exon start="13130" stop="13095"/>
              <exon start="11131" stop="11091"/>
              <exon start="10553" stop="10533"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E336016" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="17217" stop="16984"/>
              <exon start="15389" stop="15336"/>
              <exon start="15148" stop="15135"/>
              <exon start="13885" stop="13740"/>
              <exon start="13130" stop="13095"/>
              <exon start="11131" stop="11091"/>
              <exon start="10553" stop="10452"/>
              <exon start="9760" stop="9681"/>
              <exon start="8664" stop="8495"/>
              <exon start="8162" stop="8078"/>
              <exon start="7209" stop="6632"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E746337" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="17216" stop="16984"/>
              <exon start="15389" stop="15336"/>
              <exon start="15148" stop="15135"/>
              <exon start="13885" stop="13764"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E357175" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="13774" stop="13740"/>
              <exon start="13130" stop="13095"/>
              <exon start="11131" stop="11091"/>
              <exon start="10553" stop="10452"/>
              <exon start="9760" stop="9681"/>
              <exon start="8664" stop="8495"/>
              <exon start="8162" stop="8078"/>
              <exon start="7209" stop="7112"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E314350" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="10526" stop="10452"/>
              <exon start="9760" stop="9681"/>
              <exon start="8664" stop="8495"/>
              <exon start="8162" stop="8078"/>
              <exon start="7209" stop="6896"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E378867" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="3" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>AAAGGTTCACGACTCACGCGTGTAGAGATCCAGTGGTCCCTTTTTTTTTGAAACCGATAAAGAAGTGGGAAACAAATTCCTCCGTCACATACGGCCAAAGGCGGAGGAGATACTACTGGTCGGAAGTCTCGGATAAACGGAAATGGTTAACTCAAAAAACAACTCTTCTACCGACAGCGAAAATTCCTCCGGTGACGTTCCCGACTCTAAACCTAGTCTCTACTTTGAAGGCGAGAAGGTTCTCGCTTATCATGGCCCTCGCATCTACGAAGCAAAG : GTCCAAAAAGCAGAGCTGCGGAAGAACGAATGGAGATACTTCGTTCATTACCTT : GGCTGGAACAAAAA : TTGGGATGAATGGGTAGGAGCTGACCGCTTGATGAAGCACACAGAAGACAACGTCTTGAAGCAGCAGGCCCTGGACAAGAAGCAGGGCATGGAGAAAAGTACTAAATCTGGACGTTCAGCACCGGCAAAACCCAAAAGCTCAGCTG : ATGTTAAACTGGACAAGGAAGAAACTAAGAGCAATG : TTCCAAAAGGGAAAAAGCGCAAAACTGACTCAGGCGCTGAG : AAGGGCAATGTATCTGTAGAGAAACTTGTGAAGATTCAGATTCCATCTACTTTGAAGAAGCAACTAGTTGATGATTGGGAGTTCATCATGCACCAGAATAAG : CTTGTGAAGCTCCCACGATCTCCTACTGTGGATGATATATTGACCAAGTACCTTGAATACCGATCCAAAAAGGACGGGAT : GATGACTGATTCAGTTGGGGAGATACTGAATGGAATTCGATGCTATTTTGACAAAGCACTGCCTGCACTTTTATTGTACAAGAAGGAGCGCCAACAGTATCATGAAGCAGTTTCAGATAATGTCTCTCCATCTAGTGTATATGGTGCTGAACATCTATTGCGCCTTTTTG : TAAAATTGCCCGAGTTGATTGCATATGCAAAAATTGACGAGGAGTCGTTAACGAAGTTGCAACAGAAATTTCTAGACTTTCTCAA : GTTTTTGCAGAAAAACCAGGGTACTTTCTTCCTATCTGCTTATGATGGTCCTAAAGCCTCTGAAGGAAATGGCAAGGATAAAGAAAGCTGAGCAGTCTACCAATTTAGCTAGAATTAGAATGAGTCGCATCAGAAGCATTGGCGGTATTTCTTGAACACGCCAATATGCCTACTGGTGATGCCCGCAATTATAGGGCAAACTCTTTGTTGTTGTGTGTGTGATCTGTATCAGTAGATCATTTTTTATTCCTGGAGAACTATTCATTTGCAACTTATATAGTCAGGTGATCAACTTTCGATAGGAGGTTCTGCCTGTTACAATAGTTTATTGATTGTTGTTAAATTGCATGCACCTATAGAGTTTGGTGCCACAAAAAATCTAGATCGTGAACTCTTTGTACTTTAAGTTACAAAGTTTAGCAGCCTCTGTACCACTTAGCTTCACCATAGCGTAGGTGCTGAAAGGGTTTTATTGCTATTTTACATTCAGATTGGACTCATCAACTTGGCTCTGATGACTACATCTGATACTCTTGAAGGACTATTAATTTGCTGTTACATAGAGCTGATTTTAAATT</gDNA_template>
            <first_frame> K  G  S  R  L  T  R  V  E  I  Q  W  S  L  F  F  *  N  R  *  R  S  G  K  Q  I  P  P  S  H  T  A  K  G  G  G  D  T  T  G  R  K  S  R  I  N  G  N  G  *  L  K  K  Q  L  F  Y  R  Q  R  K  F  L  R  *  R  S  R  L  *  T  *  S  L  L  *  R  R  E  G  S  R  L  S  W  P  S  H  L  R  S  K   : G  P  K  S  R  A  A  E  E  R  M  E  I  L  R  S  L  P   : W  L  E  Q  K  :  L  G  *  M  G  R  S  *  P  L  D  E  A  H  R  R  Q  R  L  E  A  A  G  P  G  Q  E  A  G  H  G  E  K  Y  *  I  W  T  F  S  T  G  K  T  Q  K  L  S  * :   C  *  T  G  Q  G  R  N  *  E  Q  C :   S  K  R  E  K  A  Q  N  *  L  R  R  *   : E  G  Q  C  I  C  R  E  T  C  E  D  S  D  S  I  Y  F  E  E  A  T  S  *  *  L  G  V  H  H  A  P  E  *   : A  C  E  A  P  T  I  S  Y  C  G  *  Y  I  D  Q  V  P  *  I  P  I  Q  K  G  R  D  :  D  D  *  F  S  W  G  D  T  E  W  N  S  M  L  F  *  Q  S  T  A  C  T  F  I  V  Q  E  G  A  P  T  V  S  *  S  S  F  R  *  C  L  S  I  *  C  I  W  C  *  T  S  I  A  P  F  C :   K  I  A  R  V  D  C  I  C  K  N  *  R  G  V  V  N  E  V  A  T  E  I  S  R  L  S  Q  :  V  F  A  E  K  P  G  Y  F  L  P  I  C  L  *  W  S  *  S  L  *  R  K  W  Q  G  *  R  K  L  S  S  L  P  I  *  L  E  L  E  *  V  A  S  E  A  L  A  V  F  L  E  H  A  N  M  P  T  G  D  A  R  N  Y  R  A  N  S  L  L  L  C  V  *  S  V  S  V  D  H  F  L  F  L  E  N  Y  S  F  A  T  Y  I  V  R  *  S  T  F  D  R  R  F  C  L  L  Q  *  F  I  D  C  C  *  I  A  C  T  Y  R  V  W  C  H  K  K  S  R  S  *  T  L  C  T  L  S  Y  K  V  *  Q  P  L  Y  H  L  A  S  P  *  R  R  C  *  K  G  F  I  A  I  L  H  S  D  W  T  H  Q  L  G  S  D  D  Y  I  *  Y  S  *  R  T  I  N  L  L  L  H  R  A  D  F  K   </first_frame>
            <second_frame>  K  V  H  D  S  R  V  *  R  S  S  G  P  F  F  F  E  T  D  K  E  V  G  N  K  F  L  R  H  I  R  P  K  A  E  E  I  L  L  V  G  S  L  G  *  T  E  M  V  N  S  K  N  N  S  S  T  D  S  E  N  S  S  G  D  V  P  D  S  K  P  S  L  Y  F  E  G  E  K  V  L  A  Y  H  G  P  R  I  Y  E  A  K  :  V  Q  K  A  E  L  R  K  N  E  W  R  Y  F  V  H  Y  L  :  G  W  N  K  N :   W  D  E  W  V  G  A  D  R  L  M  K  H  T  E  D  N  V  L  K  Q  Q  A  L  D  K  K  Q  G  M  E  K  S  T  K  S  G  R  S  A  P  A  K  P  K  S  S  A   : D  V  K  L  D  K  E  E  T  K  S  N   : V  P  K  G  K  K  R  K  T  D  S  G  A  E  :  K  G  N  V  S  V  E  K  L  V  K  I  Q  I  P  S  T  L  K  K  Q  L  V  D  D  W  E  F  I  M  H  Q  N  K  :  L  V  K  L  P  R  S  P  T  V  D  D  I  L  T  K  Y  L  E  Y  R  S  K  K  D  G  M :   M  T  D  S  V  G  E  I  L  N  G  I  R  C  Y  F  D  K  A  L  P  A  L  L  L  Y  K  K  E  R  Q  Q  Y  H  E  A  V  S  D  N  V  S  P  S  S  V  Y  G  A  E  H  L  L  R  L  F   : V  K  L  P  E  L  I  A  Y  A  K  I  D  E  E  S  L  T  K  L  Q  Q  K  F  L  D  F  L  K :   F  L  Q  K  N  Q  G  T  F  F  L  S  A  Y  D  G  P  K  A  S  E  G  N  G  K  D  K  E  S  *  A  V  Y  Q  F  S  *  N  *  N  E  S  H  Q  K  H  W  R  Y  F  L  N  T  P  I  C  L  L  V  M  P  A  I  I  G  Q  T  L  C  C  C  V  C  D  L  Y  Q  *  I  I  F  Y  S  W  R  T  I  H  L  Q  L  I  *  S  G  D  Q  L  S  I  G  G  S  A  C  Y  N  S  L  L  I  V  V  K  L  H  A  P  I  E  F  G  A  T  K  N  L  D  R  E  L  F  V  L  *  V  T  K  F  S  S  L  C  T  T  *  L  H  H  S  V  G  A  E  R  V  L  L  L  F  Y  I  Q  I  G  L  I  N  L  A  L  M  T  T  S  D  T  L  E  G  L  L  I  C  C  Y  I  E  L  I  L  N  </second_frame>
            <third_frame>   R  F  T  T  H  A  C  R  D  P  V  V  P  F  F  L  K  P  I  K  K  W  E  T  N  S  S  V  T  Y  G  Q  R  R  R  R  Y  Y  W  S  E  V  S  D  K  R  K  W  L  T  Q  K  T  T  L  L  P  T  A  K  I  P  P  V  T  F  P  T  L  N  L  V  S  T  L  K  A  R  R  F  S  L  I  M  A  L  A  S  T  K  Q  R :   S  K  K  Q  S  C  G  R  T  N  G  D  T  S  F  I  T  L :   A  G  T  K   : I  G  M  N  G  *  E  L  T  A  *  *  S  T  Q  K  T  T  S  *  S  S  R  P  W  T  R  S  R  A  W  R  K  V  L  N  L  D  V  Q  H  R  Q  N  P  K  A  Q  L  :  M  L  N  W  T  R  K  K  L  R  A  M  :  F  Q  K  G  K  S  A  K  L  T  Q  A  L  R :   R  A  M  Y  L  *  R  N  L  *  R  F  R  F  H  L  L  *  R  S  N  *  L  M  I  G  S  S  S  C  T  R  I  S :   L  *  S  S  H  D  L  L  L  W  M  I  Y  *  P  S  T  L  N  T  D  P  K  R  T  G   : *  *  L  I  Q  L  G  R  Y  *  M  E  F  D  A  I  L  T  K  H  C  L  H  F  Y  C  T  R  R  S  A  N  S  I  M  K  Q  F  Q  I  M  S  L  H  L  V  Y  M  V  L  N  I  Y  C  A  F  L  :  *  N  C  P  S  *  L  H  M  Q  K  L  T  R  S  R  *  R  S  C  N  R  N  F  *  T  F  S   : S  F  C  R  K  T  R  V  L  S  S  Y  L  L  M  M  V  L  K  P  L  K  E  M  A  R  I  K  K  A  E  Q  S  T  N  L  A  R  I  R  M  S  R  I  R  S  I  G  G  I  S  *  T  R  Q  Y  A  Y  W  *  C  P  Q  L  *  G  K  L  F  V  V  V  C  V  I  C  I  S  R  S  F  F  I  P  G  E  L  F  I  C  N  L  Y  S  Q  V  I  N  F  R  *  E  V  L  P  V  T  I  V  Y  *  L  L  L  N  C  M  H  L  *  S  L  V  P  Q  K  I  *  I  V  N  S  L  Y  F  K  L  Q  S  L  A  A  S  V  P  L  S  F  T  I  A  *  V  L  K  G  F  Y  C  Y  F  T  F  R  L  D  S  S  T  W  L  *  *  L  H  L  I  L  L  K  D  Y  *  F  A  V  T  *  S  *  F  *  I </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02SLe0017H17.1" strand="-"/>
                <serials PGL_serial="3" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="17124" stop="16984"/>
                    <exon start="15389" stop="15336"/>
                    <exon start="15148" stop="15135"/>
                    <exon start="13885" stop="13740"/>
                    <exon start="13130" stop="13095"/>
                    <exon start="11131" stop="11091"/>
                    <exon start="10553" stop="10452"/>
                    <exon start="9760" stop="9681"/>
                    <exon start="8664" stop="8495"/>
                    <exon start="8162" stop="8078"/>
                    <exon start="7209" stop="7119"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>957</number_coding_nucleotides>
                  <number_encoded_amino_acids>319</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>TEMVNSKNNSSTDSENSSGDVPDSKPSLYFEGEKVLAYHGPRIYEAKVQKAELRKNEWRYFVHYLGWNKNWDEWVGADRLMKHTEDNVLKQQALDKKQGMEKSTKSGRSAPAKPKSSADVKLDKEETKSNVPKGKKRKTDSGAEKGNVSVEKLVKIQIPSTLKKQLVDDWEFIMHQNKLVKLPRSPTVDDILTKYLEYRSKKDGMMTDSVGEILNGIRCYFDKALPALLLYKKERQQYHEAVSDNVSPSSVYGAEHLLRLFVKLPELIAYAKIDEESLTKLQQKFLDFLKFLQKNQGTFFLSAYDGPKASEGNGKDKES*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="2">
          <exon_coordinates>
            <exon e_start="16942" e_stop="15804"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.997"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.997">
            <gDNA_exon_boundary e_start="16942" e_stop="15804" e_length="1139"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="16942" stop="16363"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E272054" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="16942" stop="16377"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E371140" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="16938" stop="16370"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E551257" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="16938" stop="16370"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E688206" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="16501" stop="15804"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E371139" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="3" AGS_serial="2" gDNA_strand="-"/>
          <translation>
            <gDNA_template>GCTAATTTTGTTTGGGTATACCGTAATTAATTGCCGAAATTGAATGATTAGGCCTTTTATCACACGTATCTTCCTTTGGATTATTCGTGTATCTAATTTGTCTGTAACGGTTGTGTCATATCTTCTCTGATTTATGTTTGATAATTGGTTGAGATTTTTTGTCATTTTGCTTTTCTGTTTGCTGTTAGATATGCACCACTTTGCATCCGATTGTGTGATGATTTCAGGGGAACTATTATGACTTTTGGACTGTTTCATCCATATTTAATGCTAAATTGGCGTAGAATTAGAGTTGCAAATTATACTAATCCTGTCCTGTAATCCATAATTCTGTTCGTTTTTTTAGCTTTATGAATAAATTATGGATTGTCTCTACTGTTTGATGCTTTTAGGTTTGCTTTATCATCTTAACTCATTGCTCTACTGACTCTAATCTAGACTTAGGGGTCAATCTATTGATTTTTTCTGTGGACTCCACTCTCTCTGCTCTAATGTCTGTTAAGCCTTCTCAAAGATTAGGTAAACTAAACAATTGGCAGTGTCGAAGGATGTTACATATATGAACATCCTCATATAGATTGTGGAAGGGTTCCTAAATTGATTTAGCGATCTTGAGCTAGTCTCCATCATGATTTTATTTAGATAATCTGATTTGCGCCCCATAGCAAACTTTTTGGCATGATTGTTTTCACATATCATAGAAACAATTTTTAATGTCTTATATATTCAATACATTTACACTGATTTTGTATTTTTGTGCAATCCATGTAAATATGGGTTGATCTGAGTTTAAGAACTGGGATGAATTTTGGAAAATATACTTCAACTTTTGACCTATTCCAGTTACCCGATCTTCCCTGCAAATCATGTTTTTGTATGTCAAGAGAATGCAACTCTAGACAATATATGGTTCTTATACGGAGGATTGCTAGTTTCACCTCTTATAGTTATGCACTAGTGTATTTCTGACAGGATATAGTGTGTGATATGTAGGTCAGATGCACATCATGGGTTCGAATCCTACCATAGACAAAGGCCTGATATTTAAGTGGAAAAGGGTAGAGGGGCAGGTTCATTATCCACTGAGTTTTGAACCATACACCACTAGCCGTTGGAAATTTCTCAGTTATTAAAAAAAA</gDNA_template>
            <first_frame> A  N  F  V  W  V  Y  R  N  *  L  P  K  L  N  D  *  A  F  Y  H  T  Y  L  P  L  D  Y  S  C  I  *  F  V  C  N  G  C  V  I  S  S  L  I  Y  V  *  *  L  V  E  I  F  C  H  F  A  F  L  F  A  V  R  Y  A  P  L  C  I  R  L  C  D  D  F  R  G  T  I  M  T  F  G  L  F  H  P  Y  L  M  L  N  W  R  R  I  R  V  A  N  Y  T  N  P  V  L  *  S  I  I  L  F  V  F  L  A  L  *  I  N  Y  G  L  S  L  L  F  D  A  F  R  F  A  L  S  S  *  L  I  A  L  L  T  L  I  *  T  *  G  S  I  Y  *  F  F  L  W  T  P  L  S  L  L  *  C  L  L  S  L  L  K  D  *  V  N  *  T  I  G  S  V  E  G  C  Y  I  Y  E  H  P  H  I  D  C  G  R  V  P  K  L  I  *  R  S  *  A  S  L  H  H  D  F  I  *  I  I  *  F  A  P  H  S  K  L  F  G  M  I  V  F  T  Y  H  R  N  N  F  *  C  L  I  Y  S  I  H  L  H  *  F  C  I  F  V  Q  S  M  *  I  W  V  D  L  S  L  R  T  G  M  N  F  G  K  Y  T  S  T  F  D  L  F  Q  L  P  D  L  P  C  K  S  C  F  C  M  S  R  E  C  N  S  R  Q  Y  M  V  L  I  R  R  I  A  S  F  T  S  Y  S  Y  A  L  V  Y  F  *  Q  D  I  V  C  D  M  *  V  R  C  T  S  W  V  R  I  L  P  *  T  K  A  *  Y  L  S  G  K  G  *  R  G  R  F  I  I  H  *  V  L  N  H  T  P  L  A  V  G  N  F  S  V  I  K  K   </first_frame>
            <second_frame>  L  I  L  F  G  Y  T  V  I  N  C  R  N  *  M  I  R  P  F  I  T  R  I  F  L  W  I  I  R  V  S  N  L  S  V  T  V  V  S  Y  L  L  *  F  M  F  D  N  W  L  R  F  F  V  I  L  L  F  C  L  L  L  D  M  H  H  F  A  S  D  C  V  M  I  S  G  E  L  L  *  L  L  D  C  F  I  H  I  *  C  *  I  G  V  E  L  E  L  Q  I  I  L  I  L  S  C  N  P  *  F  C  S  F  F  *  L  Y  E  *  I  M  D  C  L  Y  C  L  M  L  L  G  L  L  Y  H  L  N  S  L  L  Y  *  L  *  S  R  L  R  G  Q  S  I  D  F  F  C  G  L  H  S  L  C  S  N  V  C  *  A  F  S  K  I  R  *  T  K  Q  L  A  V  S  K  D  V  T  Y  M  N  I  L  I  *  I  V  E  G  F  L  N  *  F  S  D  L  E  L  V  S  I  M  I  L  F  R  *  S  D  L  R  P  I  A  N  F  L  A  *  L  F  S  H  I  I  E  T  I  F  N  V  L  Y  I  Q  Y  I  Y  T  D  F  V  F  L  C  N  P  C  K  Y  G  L  I  *  V  *  E  L  G  *  I  L  E  N  I  L  Q  L  L  T  Y  S  S  Y  P  I  F  P  A  N  H  V  F  V  C  Q  E  N  A  T  L  D  N  I  W  F  L  Y  G  G  L  L  V  S  P  L  I  V  M  H  *  C  I  S  D  R  I  *  C  V  I  C  R  S  D  A  H  H  G  F  E  S  Y  H  R  Q  R  P  D  I  *  V  E  K  G  R  G  A  G  S  L  S  T  E  F  *  T  I  H  H  *  P  L  E  I  S  Q  L  L  K  K  </second_frame>
            <third_frame>   *  F  C  L  G  I  P  *  L  I  A  E  I  E  *  L  G  L  L  S  H  V  S  S  F  G  L  F  V  Y  L  I  C  L  *  R  L  C  H  I  F  S  D  L  C  L  I  I  G  *  D  F  L  S  F  C  F  S  V  C  C  *  I  C  T  T  L  H  P  I  V  *  *  F  Q  G  N  Y  Y  D  F  W  T  V  S  S  I  F  N  A  K  L  A  *  N  *  S  C  K  L  Y  *  S  C  P  V  I  H  N  S  V  R  F  F  S  F  M  N  K  L  W  I  V  S  T  V  *  C  F  *  V  C  F  I  I  L  T  H  C  S  T  D  S  N  L  D  L  G  V  N  L  L  I  F  S  V  D  S  T  L  S  A  L  M  S  V  K  P  S  Q  R  L  G  K  L  N  N  W  Q  C  R  R  M  L  H  I  *  T  S  S  Y  R  L  W  K  G  S  *  I  D  L  A  I  L  S  *  S  P  S  *  F  Y  L  D  N  L  I  C  A  P  *  Q  T  F  W  H  D  C  F  H  I  S  *  K  Q  F  L  M  S  Y  I  F  N  T  F  T  L  I  L  Y  F  C  A  I  H  V  N  M  G  *  S  E  F  K  N  W  D  E  F  W  K  I  Y  F  N  F  *  P  I  P  V  T  R  S  S  L  Q  I  M  F  L  Y  V  K  R  M  Q  L  *  T  I  Y  G  S  Y  T  E  D  C  *  F  H  L  L  *  L  C  T  S  V  F  L  T  G  Y  S  V  *  Y  V  G  Q  M  H  I  M  G  S  N  P  T  I  D  K  G  L  I  F  K  W  K  R  V  E  G  Q  V  H  Y  P  L  S  F  E  P  Y  T  T  S  R  W  K  F  L  S  Y  *  K  K </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02SLe0017H17.1" strand="-"/>
                <serials PGL_serial="3" AGS_serial="2" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="16171" stop="15974"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>195</number_coding_nucleotides>
                  <number_encoded_amino_acids>65</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>IWVDLSLRTGMNFGKYTSTFDLFQLPDLPCKSCFCMSRECNSRQYMVLIRRIASFTSYSYALVYF*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="3">
          <exon_coordinates>
            <exon e_start="17260" e_stop="16984"/>
            <exon e_start="15389" e_stop="15336"/>
            <exon e_start="15148" e_stop="15135"/>
            <exon e_start="13885" e_stop="13740"/>
            <exon e_start="13130" e_stop="13095"/>
            <exon e_start="10553" e_stop="10452"/>
            <exon e_start="9760" e_stop="9681"/>
            <exon e_start="8664" e_stop="8495"/>
            <exon e_start="8162" e_stop="8078"/>
            <exon e_start="7209" e_stop="6896"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="1.000" acc_prob="0.647" e_score="0.993"/>
          <exon-intron don_prob="0.997" acc_prob="0.989" e_score="1.000"/>
          <exon-intron don_prob="0.000" acc_prob="0.999" e_score="1.000"/>
          <exon-intron don_prob="0.996" acc_prob="0.968" e_score="1.000"/>
          <exon-intron don_prob="0.937" acc_prob="0.995" e_score="1.000"/>
          <exon-intron don_prob="0.991" acc_prob="0.989" e_score="1.000"/>
          <exon-intron don_prob="0.972" acc_prob="0.951" e_score="1.000"/>
          <exon-intron don_prob="0.868" acc_prob="0.999" e_score="1.000"/>
          <exon-intron don_prob="0.993" acc_prob="0.999" e_score="1.000"/>
          <exon-only e_score="0.997"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.993">
            <gDNA_exon_boundary e_start="17260" e_stop="16984" e_length="277"/>
          </exon>
          <intron i_serial="1" don_prob="1.000" acc_prob="0.647">
            <gDNA_intron_boundary i_start="16983" i_stop="15390" i_length="1594"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="15389" e_stop="15336" e_length="54"/>
          </exon>
          <intron i_serial="2" don_prob="0.997" acc_prob="0.989">
            <gDNA_intron_boundary i_start="15335" i_stop="15149" i_length="187"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="15148" e_stop="15135" e_length="14"/>
          </exon>
          <intron i_serial="3" don_prob="0.000" acc_prob="0.999">
            <gDNA_intron_boundary i_start="15134" i_stop="13886" i_length="1249"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="13885" e_stop="13740" e_length="146"/>
          </exon>
          <intron i_serial="4" don_prob="0.996" acc_prob="0.968">
            <gDNA_intron_boundary i_start="13739" i_stop="13131" i_length="609"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="13130" e_stop="13095" e_length="36"/>
          </exon>
          <intron i_serial="5" don_prob="0.937" acc_prob="0.995">
            <gDNA_intron_boundary i_start="13094" i_stop="10554" i_length="2541"/>
          </intron>
          <exon e_serial="6" e_score="1.000">
            <gDNA_exon_boundary e_start="10553" e_stop="10452" e_length="102"/>
          </exon>
          <intron i_serial="6" don_prob="0.991" acc_prob="0.989">
            <gDNA_intron_boundary i_start="10451" i_stop="9761" i_length="691"/>
          </intron>
          <exon e_serial="7" e_score="1.000">
            <gDNA_exon_boundary e_start="9760" e_stop="9681" e_length="80"/>
          </exon>
          <intron i_serial="7" don_prob="0.972" acc_prob="0.951">
            <gDNA_intron_boundary i_start="9680" i_stop="8665" i_length="1016"/>
          </intron>
          <exon e_serial="8" e_score="1.000">
            <gDNA_exon_boundary e_start="8664" e_stop="8495" e_length="170"/>
          </exon>
          <intron i_serial="8" don_prob="0.868" acc_prob="0.999">
            <gDNA_intron_boundary i_start="8494" i_stop="8163" i_length="332"/>
          </intron>
          <exon e_serial="9" e_score="1.000">
            <gDNA_exon_boundary e_start="8162" e_stop="8078" e_length="85"/>
          </exon>
          <intron i_serial="9" don_prob="0.993" acc_prob="0.999">
            <gDNA_intron_boundary i_start="8077" i_stop="7210" i_length="868"/>
          </intron>
          <exon e_serial="10" e_score="0.997">
            <gDNA_exon_boundary e_start="7209" e_stop="6896" e_length="314"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="17260" stop="16984"/>
              <exon start="15389" stop="15336"/>
              <exon start="15148" stop="15135"/>
              <exon start="13885" stop="13765"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E207622" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="17216" stop="16984"/>
              <exon start="15389" stop="15336"/>
              <exon start="15148" stop="15135"/>
              <exon start="13885" stop="13764"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E357175" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="17192" stop="16984"/>
              <exon start="15389" stop="15336"/>
              <exon start="15148" stop="15135"/>
              <exon start="13885" stop="13740"/>
              <exon start="13130" stop="13095"/>
              <exon start="10553" stop="10452"/>
              <exon start="9760" stop="9701"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E209912" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="10526" stop="10452"/>
              <exon start="9760" stop="9681"/>
              <exon start="8664" stop="8495"/>
              <exon start="8162" stop="8078"/>
              <exon start="7209" stop="6896"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E378867" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="3" AGS_serial="3" gDNA_strand="-"/>
          <translation>
            <gDNA_template>AAAGGTTCACGACTCACGCGTGTAGAGATCCAGTGGTCCCTTTTTTTTTGAAACCGATAAAGAAGTGGGAAACAAATTCCTCCGTCACATACGGCCAAAGGCGGAGGAGATACTACTGGTCGGAAGTCTCGGATAAACGGAAATGGTTAACTCAAAAAACAACTCTTCTACCGACAGCGAAAATTCCTCCGGTGACGTTCCCGACTCTAAACCTAGTCTCTACTTTGAAGGCGAGAAGGTTCTCGCTTATCATGGCCCTCGCATCTACGAAGCAAAG : GTCCAAAAAGCAGAGCTGCGGAAGAACGAATGGAGATACTTCGTTCATTACCTT : GGCTGGAACAAAAA : TTGGGATGAATGGGTAGGAGCTGACCGCTTGATGAAGCACACAGAAGACAACGTCTTGAAGCAGCAGGCCCTGGACAAGAAGCAGGGCATGGAGAAAAGTACTAAATCTGGACGTTCAGCACCGGCAAAACCCAAAAGCTCAGCTG : ATGTTAAACTGGACAAGGAAGAAACTAAGAGCAATG : AAGGGCAATGTATCTGTAGAGAAACTTGTGAAGATTCAGATTCCATCTACTTTGAAGAAGCAACTAGTTGATGATTGGGAGTTCATCATGCACCAGAATAAG : CTTGTGAAGCTCCCACGATCTCCTACTGTGGATGATATATTGACCAAGTACCTTGAATACCGATCCAAAAAGGACGGGAT : GATGACTGATTCAGTTGGGGAGATACTGAATGGAATTCGATGCTATTTTGACAAAGCACTGCCTGCACTTTTATTGTACAAGAAGGAGCGCCAACAGTATCATGAAGCAGTTTCAGATAATGTCTCTCCATCTAGTGTATATGGTGCTGAACATCTATTGCGCCTTTTTG : TAAAATTGCCCGAGTTGATTGCATATGCAAAAATTGACGAGGAGTCGTTAACGAAGTTGCAACAGAAATTTCTAGACTTTCTCAA : GTTTTTGCAGAAAAACCAGGGTACTTTCTTCCTATCTGCTTATGATGGTCCTAAAGCCTCTGAAGGAAATGGCAAGGATAAAGAAAGCTGAGCAGTCTACCAATTTAGCTAGAATTAGAATGAGTCGCATCAGAAGCATTGGCGGTATTTCTTGAACACGCCAATATGCCTACTGGTGATGCCCGCAATTATAGGGCAAACTCTTTGTTGTTGTGTGTGTGATCTGTATCAGTAGATCATTTTTTATTCCTGGAGAACTATTCATTTGCAACTTATATAGTCAGGTGATCAACTTTCGATAGGAGGTTCTGCCT</gDNA_template>
            <first_frame> K  G  S  R  L  T  R  V  E  I  Q  W  S  L  F  F  *  N  R  *  R  S  G  K  Q  I  P  P  S  H  T  A  K  G  G  G  D  T  T  G  R  K  S  R  I  N  G  N  G  *  L  K  K  Q  L  F  Y  R  Q  R  K  F  L  R  *  R  S  R  L  *  T  *  S  L  L  *  R  R  E  G  S  R  L  S  W  P  S  H  L  R  S  K   : G  P  K  S  R  A  A  E  E  R  M  E  I  L  R  S  L  P   : W  L  E  Q  K  :  L  G  *  M  G  R  S  *  P  L  D  E  A  H  R  R  Q  R  L  E  A  A  G  P  G  Q  E  A  G  H  G  E  K  Y  *  I  W  T  F  S  T  G  K  T  Q  K  L  S  * :   C  *  T  G  Q  G  R  N  *  E  Q  * :   R  A  M  Y  L  *  R  N  L  *  R  F  R  F  H  L  L  *  R  S  N  *  L  M  I  G  S  S  S  C  T  R  I  S :   L  *  S  S  H  D  L  L  L  W  M  I  Y  *  P  S  T  L  N  T  D  P  K  R  T  G   : *  *  L  I  Q  L  G  R  Y  *  M  E  F  D  A  I  L  T  K  H  C  L  H  F  Y  C  T  R  R  S  A  N  S  I  M  K  Q  F  Q  I  M  S  L  H  L  V  Y  M  V  L  N  I  Y  C  A  F  L  :  *  N  C  P  S  *  L  H  M  Q  K  L  T  R  S  R  *  R  S  C  N  R  N  F  *  T  F  S   : S  F  C  R  K  T  R  V  L  S  S  Y  L  L  M  M  V  L  K  P  L  K  E  M  A  R  I  K  K  A  E  Q  S  T  N  L  A  R  I  R  M  S  R  I  R  S  I  G  G  I  S  *  T  R  Q  Y  A  Y  W  *  C  P  Q  L  *  G  K  L  F  V  V  V  C  V  I  C  I  S  R  S  F  F  I  P  G  E  L  F  I  C  N  L  Y  S  Q  V  I  N  F  R  *  E  V  L  P </first_frame>
            <second_frame>  K  V  H  D  S  R  V  *  R  S  S  G  P  F  F  F  E  T  D  K  E  V  G  N  K  F  L  R  H  I  R  P  K  A  E  E  I  L  L  V  G  S  L  G  *  T  E  M  V  N  S  K  N  N  S  S  T  D  S  E  N  S  S  G  D  V  P  D  S  K  P  S  L  Y  F  E  G  E  K  V  L  A  Y  H  G  P  R  I  Y  E  A  K  :  V  Q  K  A  E  L  R  K  N  E  W  R  Y  F  V  H  Y  L  :  G  W  N  K  N :   W  D  E  W  V  G  A  D  R  L  M  K  H  T  E  D  N  V  L  K  Q  Q  A  L  D  K  K  Q  G  M  E  K  S  T  K  S  G  R  S  A  P  A  K  P  K  S  S  A   : D  V  K  L  D  K  E  E  T  K  S  N   : E  G  Q  C  I  C  R  E  T  C  E  D  S  D  S  I  Y  F  E  E  A  T  S  *  *  L  G  V  H  H  A  P  E  *   : A  C  E  A  P  T  I  S  Y  C  G  *  Y  I  D  Q  V  P  *  I  P  I  Q  K  G  R  D  :  D  D  *  F  S  W  G  D  T  E  W  N  S  M  L  F  *  Q  S  T  A  C  T  F  I  V  Q  E  G  A  P  T  V  S  *  S  S  F  R  *  C  L  S  I  *  C  I  W  C  *  T  S  I  A  P  F  C :   K  I  A  R  V  D  C  I  C  K  N  *  R  G  V  V  N  E  V  A  T  E  I  S  R  L  S  Q  :  V  F  A  E  K  P  G  Y  F  L  P  I  C  L  *  W  S  *  S  L  *  R  K  W  Q  G  *  R  K  L  S  S  L  P  I  *  L  E  L  E  *  V  A  S  E  A  L  A  V  F  L  E  H  A  N  M  P  T  G  D  A  R  N  Y  R  A  N  S  L  L  L  C  V  *  S  V  S  V  D  H  F  L  F  L  E  N  Y  S  F  A  T  Y  I  V  R  *  S  T  F  D  R  R  F  C   </second_frame>
            <third_frame>   R  F  T  T  H  A  C  R  D  P  V  V  P  F  F  L  K  P  I  K  K  W  E  T  N  S  S  V  T  Y  G  Q  R  R  R  R  Y  Y  W  S  E  V  S  D  K  R  K  W  L  T  Q  K  T  T  L  L  P  T  A  K  I  P  P  V  T  F  P  T  L  N  L  V  S  T  L  K  A  R  R  F  S  L  I  M  A  L  A  S  T  K  Q  R :   S  K  K  Q  S  C  G  R  T  N  G  D  T  S  F  I  T  L :   A  G  T  K   : I  G  M  N  G  *  E  L  T  A  *  *  S  T  Q  K  T  T  S  *  S  S  R  P  W  T  R  S  R  A  W  R  K  V  L  N  L  D  V  Q  H  R  Q  N  P  K  A  Q  L  :  M  L  N  W  T  R  K  K  L  R  A  M  :  K  G  N  V  S  V  E  K  L  V  K  I  Q  I  P  S  T  L  K  K  Q  L  V  D  D  W  E  F  I  M  H  Q  N  K  :  L  V  K  L  P  R  S  P  T  V  D  D  I  L  T  K  Y  L  E  Y  R  S  K  K  D  G  M :   M  T  D  S  V  G  E  I  L  N  G  I  R  C  Y  F  D  K  A  L  P  A  L  L  L  Y  K  K  E  R  Q  Q  Y  H  E  A  V  S  D  N  V  S  P  S  S  V  Y  G  A  E  H  L  L  R  L  F   : V  K  L  P  E  L  I  A  Y  A  K  I  D  E  E  S  L  T  K  L  Q  Q  K  F  L  D  F  L  K :   F  L  Q  K  N  Q  G  T  F  F  L  S  A  Y  D  G  P  K  A  S  E  G  N  G  K  D  K  E  S  *  A  V  Y  Q  F  S  *  N  *  N  E  S  H  Q  K  H  W  R  Y  F  L  N  T  P  I  C  L  L  V  M  P  A  I  I  G  Q  T  L  C  C  C  V  C  D  L  Y  Q  *  I  I  F  Y  S  W  R  T  I  H  L  Q  L  I  *  S  G  D  Q  L  S  I  G  G  S  A  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02SLe0017H17.1" strand="-"/>
                <serials PGL_serial="3" AGS_serial="3" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="13826" stop="13740"/>
                    <exon start="13130" stop="13095"/>
                    <exon start="10553" stop="10452"/>
                    <exon start="9760" stop="9681"/>
                    <exon start="8664" stop="8495"/>
                    <exon start="8162" stop="8078"/>
                    <exon start="7209" stop="7119"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>648</number_coding_nucleotides>
                  <number_encoded_amino_acids>216</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>SSRPWTRSRAWRKVLNLDVQHRQNPKAQLMLNWTRKKLRAMKGNVSVEKLVKIQIPSTLKKQLVDDWEFIMHQNKLVKLPRSPTVDDILTKYLEYRSKKDGMMTDSVGEILNGIRCYFDKALPALLLYKKERQQYHEAVSDNVSPSSVYGAEHLLRLFVKLPELIAYAKIDEESLTKLQQKFLDFLKFLQKNQGTFFLSAYDGPKASEGNGKDKES*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C02SLe0017H17.1" strand="-"/>
                <serials PGL_serial="3" AGS_serial="3" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="17258" stop="16984"/>
                    <exon start="15389" stop="15336"/>
                    <exon start="15148" stop="15135"/>
                    <exon start="13885" stop="13869"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>357</number_coding_nucleotides>
                  <number_encoded_amino_acids>119</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>RFTTHACRDPVVPFFLKPIKKWETNSSVTYGQRRRRYYWSEVSDKRKWLTQKTTLLPTAKIPPVTFPTLNLVSTLKARRFSLIMALASTKQRSKKQSCGRTNGDTSFITLAGTKIGMNG*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="4">
          <exon_coordinates>
            <exon e_start="15364" e_stop="15336"/>
            <exon e_start="13885" e_stop="13740"/>
            <exon e_start="13130" e_stop="13095"/>
            <exon e_start="10553" e_stop="10452"/>
            <exon e_start="9760" e_stop="9681"/>
            <exon e_start="8664" e_stop="8495"/>
            <exon e_start="8162" e_stop="8078"/>
            <exon e_start="7209" e_stop="6896"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.997" acc_prob="0.999" e_score="1.000"/>
          <exon-intron don_prob="0.996" acc_prob="0.968" e_score="1.000"/>
          <exon-intron don_prob="0.937" acc_prob="0.995" e_score="1.000"/>
          <exon-intron don_prob="0.991" acc_prob="0.989" e_score="1.000"/>
          <exon-intron don_prob="0.972" acc_prob="0.951" e_score="1.000"/>
          <exon-intron don_prob="0.868" acc_prob="0.999" e_score="1.000"/>
          <exon-intron don_prob="0.993" acc_prob="0.999" e_score="1.000"/>
          <exon-only e_score="0.997"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="15364" e_stop="15336" e_length="29"/>
          </exon>
          <intron i_serial="1" don_prob="0.997" acc_prob="0.999">
            <gDNA_intron_boundary i_start="15335" i_stop="13886" i_length="1450"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="13885" e_stop="13740" e_length="146"/>
          </exon>
          <intron i_serial="2" don_prob="0.996" acc_prob="0.968">
            <gDNA_intron_boundary i_start="13739" i_stop="13131" i_length="609"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="13130" e_stop="13095" e_length="36"/>
          </exon>
          <intron i_serial="3" don_prob="0.937" acc_prob="0.995">
            <gDNA_intron_boundary i_start="13094" i_stop="10554" i_length="2541"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="10553" e_stop="10452" e_length="102"/>
          </exon>
          <intron i_serial="4" don_prob="0.991" acc_prob="0.989">
            <gDNA_intron_boundary i_start="10451" i_stop="9761" i_length="691"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="9760" e_stop="9681" e_length="80"/>
          </exon>
          <intron i_serial="5" don_prob="0.972" acc_prob="0.951">
            <gDNA_intron_boundary i_start="9680" i_stop="8665" i_length="1016"/>
          </intron>
          <exon e_serial="6" e_score="1.000">
            <gDNA_exon_boundary e_start="8664" e_stop="8495" e_length="170"/>
          </exon>
          <intron i_serial="6" don_prob="0.868" acc_prob="0.999">
            <gDNA_intron_boundary i_start="8494" i_stop="8163" i_length="332"/>
          </intron>
          <exon e_serial="7" e_score="1.000">
            <gDNA_exon_boundary e_start="8162" e_stop="8078" e_length="85"/>
          </exon>
          <intron i_serial="7" don_prob="0.993" acc_prob="0.999">
            <gDNA_intron_boundary i_start="8077" i_stop="7210" i_length="868"/>
          </intron>
          <exon e_serial="8" e_score="0.997">
            <gDNA_exon_boundary e_start="7209" e_stop="6896" e_length="314"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="15364" stop="15336"/>
              <exon start="13885" stop="13740"/>
              <exon start="13130" stop="13095"/>
              <exon start="10553" stop="10452"/>
              <exon start="9760" stop="9681"/>
              <exon start="8664" stop="8613"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E309907" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="10526" stop="10452"/>
              <exon start="9760" stop="9681"/>
              <exon start="8664" stop="8495"/>
              <exon start="8162" stop="8078"/>
              <exon start="7209" stop="6896"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E378867" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="3" AGS_serial="4" gDNA_strand="-"/>
          <translation>
            <gDNA_template>ACGAATGGAGATACTTCGTTCATTACCTT : TTGGGATGAATGGGTAGGAGCTGACCGCTTGATGAAGCACACAGAAGACAACGTCTTGAAGCAGCAGGCCCTGGACAAGAAGCAGGGCATGGAGAAAAGTACTAAATCTGGACGTTCAGCACCGGCAAAACCCAAAAGCTCAGCTG : ATGTTAAACTGGACAAGGAAGAAACTAAGAGCAATG : AAGGGCAATGTATCTGTAGAGAAACTTGTGAAGATTCAGATTCCATCTACTTTGAAGAAGCAACTAGTTGATGATTGGGAGTTCATCATGCACCAGAATAAG : CTTGTGAAGCTCCCACGATCTCCTACTGTGGATGATATATTGACCAAGTACCTTGAATACCGATCCAAAAAGGACGGGAT : GATGACTGATTCAGTTGGGGAGATACTGAATGGAATTCGATGCTATTTTGACAAAGCACTGCCTGCACTTTTATTGTACAAGAAGGAGCGCCAACAGTATCATGAAGCAGTTTCAGATAATGTCTCTCCATCTAGTGTATATGGTGCTGAACATCTATTGCGCCTTTTTG : TAAAATTGCCCGAGTTGATTGCATATGCAAAAATTGACGAGGAGTCGTTAACGAAGTTGCAACAGAAATTTCTAGACTTTCTCAA : GTTTTTGCAGAAAAACCAGGGTACTTTCTTCCTATCTGCTTATGATGGTCCTAAAGCCTCTGAAGGAAATGGCAAGGATAAAGAAAGCTGAGCAGTCTACCAATTTAGCTAGAATTAGAATGAGTCGCATCAGAAGCATTGGCGGTATTTCTTGAACACGCCAATATGCCTACTGGTGATGCCCGCAATTATAGGGCAAACTCTTTGTTGTTGTGTGTGTGATCTGTATCAGTAGATCATTTTTTATTCCTGGAGAACTATTCATTTGCAACTTATATAGTCAGGTGATCAACTTTCGATAGGAGGTTCTGCCT</gDNA_template>
            <first_frame> T  N  G  D  T  S  F  I  T  F :   W  D  E  W  V  G  A  D  R  L  M  K  H  T  E  D  N  V  L  K  Q  Q  A  L  D  K  K  Q  G  M  E  K  S  T  K  S  G  R  S  A  P  A  K  P  K  S  S  A   : D  V  K  L  D  K  E  E  T  K  S  N   : E  G  Q  C  I  C  R  E  T  C  E  D  S  D  S  I  Y  F  E  E  A  T  S  *  *  L  G  V  H  H  A  P  E  *   : A  C  E  A  P  T  I  S  Y  C  G  *  Y  I  D  Q  V  P  *  I  P  I  Q  K  G  R  D  :  D  D  *  F  S  W  G  D  T  E  W  N  S  M  L  F  *  Q  S  T  A  C  T  F  I  V  Q  E  G  A  P  T  V  S  *  S  S  F  R  *  C  L  S  I  *  C  I  W  C  *  T  S  I  A  P  F  C :   K  I  A  R  V  D  C  I  C  K  N  *  R  G  V  V  N  E  V  A  T  E  I  S  R  L  S  Q  :  V  F  A  E  K  P  G  Y  F  L  P  I  C  L  *  W  S  *  S  L  *  R  K  W  Q  G  *  R  K  L  S  S  L  P  I  *  L  E  L  E  *  V  A  S  E  A  L  A  V  F  L  E  H  A  N  M  P  T  G  D  A  R  N  Y  R  A  N  S  L  L  L  C  V  *  S  V  S  V  D  H  F  L  F  L  E  N  Y  S  F  A  T  Y  I  V  R  *  S  T  F  D  R  R  F  C   </first_frame>
            <second_frame>  R  M  E  I  L  R  S  L  P   : F  G  M  N  G  *  E  L  T  A  *  *  S  T  Q  K  T  T  S  *  S  S  R  P  W  T  R  S  R  A  W  R  K  V  L  N  L  D  V  Q  H  R  Q  N  P  K  A  Q  L  :  M  L  N  W  T  R  K  K  L  R  A  M  :  K  G  N  V  S  V  E  K  L  V  K  I  Q  I  P  S  T  L  K  K  Q  L  V  D  D  W  E  F  I  M  H  Q  N  K  :  L  V  K  L  P  R  S  P  T  V  D  D  I  L  T  K  Y  L  E  Y  R  S  K  K  D  G  M :   M  T  D  S  V  G  E  I  L  N  G  I  R  C  Y  F  D  K  A  L  P  A  L  L  L  Y  K  K  E  R  Q  Q  Y  H  E  A  V  S  D  N  V  S  P  S  S  V  Y  G  A  E  H  L  L  R  L  F   : V  K  L  P  E  L  I  A  Y  A  K  I  D  E  E  S  L  T  K  L  Q  Q  K  F  L  D  F  L  K :   F  L  Q  K  N  Q  G  T  F  F  L  S  A  Y  D  G  P  K  A  S  E  G  N  G  K  D  K  E  S  *  A  V  Y  Q  F  S  *  N  *  N  E  S  H  Q  K  H  W  R  Y  F  L  N  T  P  I  C  L  L  V  M  P  A  I  I  G  Q  T  L  C  C  C  V  C  D  L  Y  Q  *  I  I  F  Y  S  W  R  T  I  H  L  Q  L  I  *  S  G  D  Q  L  S  I  G  G  S  A  </second_frame>
            <third_frame>   E  W  R  Y  F  V  H  Y  L  :  L  G  *  M  G  R  S  *  P  L  D  E  A  H  R  R  Q  R  L  E  A  A  G  P  G  Q  E  A  G  H  G  E  K  Y  *  I  W  T  F  S  T  G  K  T  Q  K  L  S  * :   C  *  T  G  Q  G  R  N  *  E  Q  * :   R  A  M  Y  L  *  R  N  L  *  R  F  R  F  H  L  L  *  R  S  N  *  L  M  I  G  S  S  S  C  T  R  I  S :   L  *  S  S  H  D  L  L  L  W  M  I  Y  *  P  S  T  L  N  T  D  P  K  R  T  G   : *  *  L  I  Q  L  G  R  Y  *  M  E  F  D  A  I  L  T  K  H  C  L  H  F  Y  C  T  R  R  S  A  N  S  I  M  K  Q  F  Q  I  M  S  L  H  L  V  Y  M  V  L  N  I  Y  C  A  F  L  :  *  N  C  P  S  *  L  H  M  Q  K  L  T  R  S  R  *  R  S  C  N  R  N  F  *  T  F  S   : S  F  C  R  K  T  R  V  L  S  S  Y  L  L  M  M  V  L  K  P  L  K  E  M  A  R  I  K  K  A  E  Q  S  T  N  L  A  R  I  R  M  S  R  I  R  S  I  G  G  I  S  *  T  R  Q  Y  A  Y  W  *  C  P  Q  L  *  G  K  L  F  V  V  V  C  V  I  C  I  S  R  S  F  F  I  P  G  E  L  F  I  C  N  L  Y  S  Q  V  I  N  F  R  *  E  V  L  P </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02SLe0017H17.1" strand="-"/>
                <serials PGL_serial="3" AGS_serial="4" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="13826" stop="13740"/>
                    <exon start="13130" stop="13095"/>
                    <exon start="10553" stop="10452"/>
                    <exon start="9760" stop="9681"/>
                    <exon start="8664" stop="8495"/>
                    <exon start="8162" stop="8078"/>
                    <exon start="7209" stop="7119"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>648</number_coding_nucleotides>
                  <number_encoded_amino_acids>216</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>SSRPWTRSRAWRKVLNLDVQHRQNPKAQLMLNWTRKKLRAMKGNVSVEKLVKIQIPSTLKKQLVDDWEFIMHQNKLVKLPRSPTVDDILTKYLEYRSKKDGMMTDSVGEILNGIRCYFDKALPALLLYKKERQQYHEAVSDNVSPSSVYGAEHLLRLFVKLPELIAYAKIDEESLTKLQQKFLDFLKFLQKNQGTFFLSAYDGPKASEGNGKDKES*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="5">
          <exon_coordinates>
            <exon e_start="11197" e_stop="10538"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.985"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.985">
            <gDNA_exon_boundary e_start="11197" e_stop="10538" e_length="660"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="11197" stop="10538"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E724400" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="3" AGS_serial="5" gDNA_strand="-"/>
          <translation>
            <gDNA_template>TCTGTTAGTTTCTATTGGGGATTTGCTTATAAGAAATTTATCTTTAAAATTGAACTTTTCTTGCAGTTCCAAAAGGGAAAAAGCGCAAAACTGACTCAGGCGCTGAGGTTTGCTTAATTCTAGACTCTATAACTCACTGTTTCTTTTTCCTTTTCGAGGTAATCGTTGACACTCTTCTTGTGTAGAGGCCCAACATTTACTTCCAAATAACATTGTTGGACTAAATCGTTATGTAAAGTTATTTACATTCTGCAGAATACTCCATTAATAACACCTCCATTTTAGTCATATTAAGCTGTGTGATTTAGGCACCACTATCCCCTCCCTCTCTAATCACACTTCTTTTTCCTTTGAAGACATTTTTTGTTGAAAAGTTCCTCAGCTATTATTTAAGTGCTTCAATCACATCGAAGGAAGTGATTTAAAAAGACCTGCAATTGCTTGATCAATACAAACTTAGGTAAAAATAGGGACAATGGAAGAAAAAGATCCATGTAGGTGATAGCTATTAGTTGAGGATAGGTATTAGACTCGTATGGAACTTCCTTTTTTTTTTCTGGTAATGCGTAGTAGTAGTAGTTGTTTTTGTTGTATAGTATTAGTGTTTGAAAGATATTGATTTGTAACTCGGTCATTGATGGCAGAAGGGCAATGTATCTG</gDNA_template>
            <first_frame> S  V  S  F  Y  W  G  F  A  Y  K  K  F  I  F  K  I  E  L  F  L  Q  F  Q  K  G  K  S  A  K  L  T  Q  A  L  R  F  A  *  F  *  T  L  *  L  T  V  S  F  S  F  S  R  *  S  L  T  L  F  L  C  R  G  P  T  F  T  S  K  *  H  C  W  T  K  S  L  C  K  V  I  Y  I  L  Q  N  T  P  L  I  T  P  P  F  *  S  Y  *  A  V  *  F  R  H  H  Y  P  L  P  L  *  S  H  F  F  F  L  *  R  H  F  L  L  K  S  S  S  A  I  I  *  V  L  Q  S  H  R  R  K  *  F  K  K  T  C  N  C  L  I  N  T  N  L  G  K  N  R  D  N  G  R  K  R  S  M  *  V  I  A  I  S  *  G  *  V  L  D  S  Y  G  T  S  F  F  F  S  G  N  A  *  *  *  *  L  F  L  L  Y  S  I  S  V  *  K  I  L  I  C  N  S  V  I  D  G  R  R  A  M  Y  L </first_frame>
            <second_frame>  L  L  V  S  I  G  D  L  L  I  R  N  L  S  L  K  L  N  F  S  C  S  S  K  R  E  K  A  Q  N  *  L  R  R  *  G  L  L  N  S  R  L  Y  N  S  L  F  L  F  P  F  R  G  N  R  *  H  S  S  C  V  E  A  Q  H  L  L  P  N  N  I  V  G  L  N  R  Y  V  K  L  F  T  F  C  R  I  L  H  *  *  H  L  H  F  S  H  I  K  L  C  D  L  G  T  T  I  P  S  L  S  N  H  T  S  F  S  F  E  D  I  F  C  *  K  V  P  Q  L  L  F  K  C  F  N  H  I  E  G  S  D  L  K  R  P  A  I  A  *  S  I  Q  T  *  V  K  I  G  T  M  E  E  K  D  P  C  R  *  *  L  L  V  E  D  R  Y  *  T  R  M  E  L  P  F  F  F  L  V  M  R  S  S  S  S  C  F  C  C  I  V  L  V  F  E  R  Y  *  F  V  T  R  S  L  M  A  E  G  Q  C  I   </second_frame>
            <third_frame>   C  *  F  L  L  G  I  C  L  *  E  I  Y  L  *  N  *  T  F  L  A  V  P  K  G  K  K  R  K  T  D  S  G  A  E  V  C  L  I  L  D  S  I  T  H  C  F  F  F  L  F  E  V  I  V  D  T  L  L  V  *  R  P  N  I  Y  F  Q  I  T  L  L  D  *  I  V  M  *  S  Y  L  H  S  A  E  Y  S  I  N  N  T  S  I  L  V  I  L  S  C  V  I  *  A  P  L  S  P  P  S  L  I  T  L  L  F  P  L  K  T  F  F  V  E  K  F  L  S  Y  Y  L  S  A  S  I  T  S  K  E  V  I  *  K  D  L  Q  L  L  D  Q  Y  K  L  R  *  K  *  G  Q  W  K  K  K  I  H  V  G  D  S  Y  *  L  R  I  G  I  R  L  V  W  N  F  L  F  F  F  W  *  C  V  V  V  V  V  V  F  V  V  *  Y  *  C  L  K  D  I  D  L  *  L  G  H  *  W  Q  K  G  N  V  S  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <none gDNA_id="C02SLe0017H17.1"/>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="4" PGL_strand="-" PGL_start="32681" PGL_stop="32219"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="32681" e_stop="32219"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.907"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.907">
            <gDNA_exon_boundary e_start="32681" e_stop="32219" e_length="463"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="32681" stop="32219"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E202664" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="4" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>TGTAACGATTCAAAAAAGAAAGAGAATTATGTAAATAAGAATAAATAGGTATTTAAGTGCATAATTGTCCTTTCACGTTTTAAATGAATAAATAAATAAATAAATAAATAAAACAGATTTGTATTTATTTATTTTAATGTTATTTGACTAATTCTTGAATTAGTCTCCTAATCCAATTAGCCCTCTCTCTCTCACGCTTCTTAACTCCCTCTCTCACGTTCTCCATCTTCCTTACATTATTTCTGCCAGAATATCAACAATTTTCATGCTTGAAGAACTCACAAAAAAAAAATTTTAAGCAAAAGAAAAAGTAATCAAAACGTCAAGGCTAAGAGAGGTTTGTTGAGTGAGGTGTACGTTGAAGTGAATTGGGAGTGGTTTGGAGGAGTTTTCCGGGCAGCAACATTTAAAGTTTGAATATCGATTAAGGTATGGGTTTCCTTCTCTCTTGGATCCTTTCCCA</gDNA_template>
            <first_frame> C  N  D  S  K  K  K  E  N  Y  V  N  K  N  K  *  V  F  K  C  I  I  V  L  S  R  F  K  *  I  N  K  *  I  N  K  *  N  R  F  V  F  I  Y  F  N  V  I  *  L  I  L  E  L  V  S  *  S  N  *  P  S  L  S  H  A  S  *  L  P  L  S  R  S  P  S  S  L  H  Y  F  C  Q  N  I  N  N  F  H  A  *  R  T  H  K  K  K  I  L  S  K  R  K  S  N  Q  N  V  K  A  K  R  G  L  L  S  E  V  Y  V  E  V  N  W  E  W  F  G  G  V  F  R  A  A  T  F  K  V  *  I  S  I  K  V  W  V  S  F  S  L  G  S  F  P  </first_frame>
            <second_frame>  V  T  I  Q  K  R  K  R  I  M  *  I  R  I  N  R  Y  L  S  A  *  L  S  F  H  V  L  N  E  *  I  N  K  *  I  N  K  T  D  L  Y  L  F  I  L  M  L  F  D  *  F  L  N  *  S  P  N  P  I  S  P  L  S  L  T  L  L  N  S  L  S  H  V  L  H  L  P  Y  I  I  S  A  R  I  S  T  I  F  M  L  E  E  L  T  K  K  K  F  *  A  K  E  K  V  I  K  T  S  R  L  R  E  V  C  *  V  R  C  T  L  K  *  I  G  S  G  L  E  E  F  S  G  Q  Q  H  L  K  F  E  Y  R  L  R  Y  G  F  P  S  L  L  D  P  F  P </second_frame>
            <third_frame>   *  R  F  K  K  E  R  E  L  C  K  *  E  *  I  G  I  *  V  H  N  C  P  F  T  F  *  M  N  K  *  I  N  K  *  I  K  Q  I  C  I  Y  L  F  *  C  Y  L  T  N  S  *  I  S  L  L  I  Q  L  A  L  S  L  S  R  F  L  T  P  S  L  T  F  S  I  F  L  T  L  F  L  P  E  Y  Q  Q  F  S  C  L  K  N  S  Q  K  K  N  F  K  Q  K  K  K  *  S  K  R  Q  G  *  E  R  F  V  E  *  G  V  R  *  S  E  L  G  V  V  W  R  S  F  P  G  S  N  I  *  S  L  N  I  D  *  G  M  G  F  L  L  S  W  I  L  S   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <none gDNA_id="C02SLe0017H17.1"/>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="5" PGL_strand="+" PGL_start="37523" PGL_stop="38644"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="37523" e_stop="37802"/>
            <exon e_start="37875" e_stop="37976"/>
            <exon e_start="38124" e_stop="38273"/>
            <exon e_start="38360" e_stop="38644"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="1.000" acc_prob="0.973" e_score="1.000"/>
          <exon-intron don_prob="0.689" acc_prob="0.957" e_score="1.000"/>
          <exon-intron don_prob="0.839" acc_prob="0.999" e_score="1.000"/>
          <exon-only e_score="0.993"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="37523" e_stop="37802" e_length="280"/>
          </exon>
          <intron i_serial="1" don_prob="1.000" acc_prob="0.973">
            <gDNA_intron_boundary i_start="37803" i_stop="37874" i_length="72"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="37875" e_stop="37976" e_length="102"/>
          </exon>
          <intron i_serial="2" don_prob="0.689" acc_prob="0.957">
            <gDNA_intron_boundary i_start="37977" i_stop="38123" i_length="147"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="38124" e_stop="38273" e_length="150"/>
          </exon>
          <intron i_serial="3" don_prob="0.839" acc_prob="0.999">
            <gDNA_intron_boundary i_start="38274" i_stop="38359" i_length="86"/>
          </intron>
          <exon e_serial="4" e_score="0.993">
            <gDNA_exon_boundary e_start="38360" e_stop="38644" e_length="285"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="37523" stop="37802"/>
              <exon start="37875" stop="37976"/>
              <exon start="38124" stop="38273"/>
              <exon start="38360" stop="38414"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E311242" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="37525" stop="37802"/>
              <exon start="37875" stop="37976"/>
              <exon start="38124" stop="38273"/>
              <exon start="38360" stop="38513"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E390347" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="37526" stop="37802"/>
              <exon start="37875" stop="37976"/>
              <exon start="38124" stop="38273"/>
              <exon start="38360" stop="38430"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E207680" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="37530" stop="37802"/>
              <exon start="37875" stop="37976"/>
              <exon start="38124" stop="38273"/>
              <exon start="38360" stop="38433"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E245613" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="37552" stop="37802"/>
              <exon start="37875" stop="37976"/>
              <exon start="38124" stop="38273"/>
              <exon start="38360" stop="38642"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E335034" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="37572" stop="37802"/>
              <exon start="37875" stop="37976"/>
              <exon start="38124" stop="38273"/>
              <exon start="38360" stop="38430"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E212378" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="37578" stop="37802"/>
              <exon start="37875" stop="37976"/>
              <exon start="38124" stop="38273"/>
              <exon start="38360" stop="38433"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E268854" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="37678" stop="37802"/>
              <exon start="37875" stop="37976"/>
              <exon start="38124" stop="38273"/>
              <exon start="38360" stop="38644"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E390346" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="38411" stop="38627"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E218450" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="5" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>TTACTAATTTCAGTAGGCGTTGACGACCCACACCGTTTACACCTCTGACAATATCATGGAACGGCATCTAACGGTGATTAAACCTAGCCGGAGCGACGAAGTTTTAGACGAAGATGAGCAGCTGCGAATCGCCAACCAGGTCAAAGCCTTGTTCGATGCTCAAGCACCTAAAAGACTCGCCAAACCAAATCGAAGCGAACCTGATTCAGTCATCCCCAATTCCCCTTTAGAAGATTTCCCTATTCCAGAACTTGACAATCTCCGATCTCTTCAATCACAG : GGTGGTAGCTTTTTTCCGGAAACTAATTGCTCGGAGCAAGACGAGTCCGTGGAAACTCAGTATTACAATGAGTTGGTTTCCATTGACAAACAGCATCACACG : ACTGGAAGTGGGTTCATAAAGGTGGTCAATCAAACGAATGGAAACATTTACGATCTTCAGTTGAATGGTGGTTATGAGAATGGTAGAGCCAAAGAGTTCAAAACTAATCCGGCGACAAACGACTGGATTCCGAGTAAAGATGATTATCAG : GTTGGATTCACCTCCTCAAAACCCAGCCGGAGCGAAGGTGATTAGATCGAAAGTGAAGAAAGCAATCAGCTGGTGAAGGTGGTTTGTTCTGTTCTCTTGAATTCGTTTGTTTATCTTGACTGATTGAGAGAGAAAAATGAGGGATGCTAGGATTTCAAGACAGTAAGTAGTTGAGTGTTGTCGTATTTTTAGTCGTATGATTTAGGTATTGCCTAGTTTCTTTTTCTCCAATGTGTATTAAACGCCCAGATTTGCTTTTCTTACCAGAGCTACTGTTTCTGCCCT</gDNA_template>
            <first_frame> L  L  I  S  V  G  V  D  D  P  H  R  L  H  L  *  Q  Y  H  G  T  A  S  N  G  D  *  T  *  P  E  R  R  S  F  R  R  R  *  A  A  A  N  R  Q  P  G  Q  S  L  V  R  C  S  S  T  *  K  T  R  Q  T  K  S  K  R  T  *  F  S  H  P  Q  F  P  F  R  R  F  P  Y  S  R  T  *  Q  S  P  I  S  S  I  T   : G  W  *  L  F  S  G  N  *  L  L  G  A  R  R  V  R  G  N  S  V  L  Q  *  V  G  F  H  *  Q  T  A  S  H   : D  W  K  W  V  H  K  G  G  Q  S  N  E  W  K  H  L  R  S  S  V  E  W  W  L  *  E  W  *  S  Q  R  V  Q  N  *  S  G  D  K  R  L  D  S  E  *  R  *  L  S   : G  W  I  H  L  L  K  T  Q  P  E  R  R  *  L  D  R  K  *  R  K  Q  S  A  G  E  G  G  L  F  C  S  L  E  F  V  C  L  S  *  L  I  E  R  E  K  *  G  M  L  G  F  Q  D  S  K  *  L  S  V  V  V  F  L  V  V  *  F  R  Y  C  L  V  S  F  S  P  M  C  I  K  R  P  D  L  L  F  L  P  E  L  L  F  L  P  </first_frame>
            <second_frame>  Y  *  F  Q  *  A  L  T  T  H  T  V  Y  T  S  D  N  I  M  E  R  H  L  T  V  I  K  P  S  R  S  D  E  V  L  D  E  D  E  Q  L  R  I  A  N  Q  V  K  A  L  F  D  A  Q  A  P  K  R  L  A  K  P  N  R  S  E  P  D  S  V  I  P  N  S  P  L  E  D  F  P  I  P  E  L  D  N  L  R  S  L  Q  S  Q  :  G  G  S  F  F  P  E  T  N  C  S  E  Q  D  E  S  V  E  T  Q  Y  Y  N  E  L  V  S  I  D  K  Q  H  H  T  :  T  G  S  G  F  I  K  V  V  N  Q  T  N  G  N  I  Y  D  L  Q  L  N  G  G  Y  E  N  G  R  A  K  E  F  K  T  N  P  A  T  N  D  W  I  P  S  K  D  D  Y  Q  :  V  G  F  T  S  S  K  P  S  R  S  E  G  D  *  I  E  S  E  E  S  N  Q  L  V  K  V  V  C  S  V  L  L  N  S  F  V  Y  L  D  *  L  R  E  K  N  E  G  C  *  D  F  K  T  V  S  S  *  V  L  S  Y  F  *  S  Y  D  L  G  I  A  *  F  L  F  L  Q  C  V  L  N  A  Q  I  C  F  S  Y  Q  S  Y  C  F  C  P </second_frame>
            <third_frame>   T  N  F  S  R  R  *  R  P  T  P  F  T  P  L  T  I  S  W  N  G  I  *  R  *  L  N  L  A  G  A  T  K  F  *  T  K  M  S  S  C  E  S  P  T  R  S  K  P  C  S  M  L  K  H  L  K  D  S  P  N  Q  I  E  A  N  L  I  Q  S  S  P  I  P  L  *  K  I  S  L  F  Q  N  L  T  I  S  D  L  F  N  H  R :   V  V  A  F  F  R  K  L  I  A  R  S  K  T  S  P  W  K  L  S  I  T  M  S  W  F  P  L  T  N  S  I  T  R :   L  E  V  G  S  *  R  W  S  I  K  R  M  E  T  F  T  I  F  S  *  M  V  V  M  R  M  V  E  P  K  S  S  K  L  I  R  R  Q  T  T  G  F  R  V  K  M  I  I  R :   L  D  S  P  P  Q  N  P  A  G  A  K  V  I  R  S  K  V  K  K  A  I  S  W  *  R  W  F  V  L  F  S  *  I  R  L  F  I  L  T  D  *  E  R  K  M  R  D  A  R  I  S  R  Q  *  V  V  E  C  C  R  I  F  S  R  M  I  *  V  L  P  S  F  F  F  S  N  V  Y  *  T  P  R  F  A  F  L  T  R  A  T  V  S  A   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02SLe0017H17.1" strand="+"/>
                <serials PGL_serial="5" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="37539" stop="37802"/>
                    <exon start="37875" stop="37976"/>
                    <exon start="38124" stop="38273"/>
                    <exon start="38360" stop="38404"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>558</number_coding_nucleotides>
                  <number_encoded_amino_acids>186</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>ALTTHTVYTSDNIMERHLTVIKPSRSDEVLDEDEQLRIANQVKALFDAQAPKRLAKPNRSEPDSVIPNSPLEDFPIPELDNLRSLQSQGGSFFPETNCSEQDESVETQYYNELVSIDKQHHTTGSGFIKVVNQTNGNIYDLQLNGGYENGRAKEFKTNPATNDWIPSKDDYQVGFTSSKPSRSEGD*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="2">
          <exon_coordinates>
            <exon e_start="37539" e_stop="37802"/>
            <exon e_start="37875" e_stop="37976"/>
            <exon e_start="38124" e_stop="38627"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="1.000" acc_prob="0.973" e_score="0.985"/>
          <exon-intron don_prob="0.689" acc_prob="0.957" e_score="1.000"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.985">
            <gDNA_exon_boundary e_start="37539" e_stop="37802" e_length="264"/>
          </exon>
          <intron i_serial="1" don_prob="1.000" acc_prob="0.973">
            <gDNA_intron_boundary i_start="37803" i_stop="37874" i_length="72"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="37875" e_stop="37976" e_length="102"/>
          </exon>
          <intron i_serial="2" don_prob="0.689" acc_prob="0.957">
            <gDNA_intron_boundary i_start="37977" i_stop="38123" i_length="147"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="38124" e_stop="38627" e_length="504"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="37539" stop="37802"/>
              <exon start="37875" stop="37976"/>
              <exon start="38124" stop="38591"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E720446" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="38411" stop="38627"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E218450" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="5" AGS_serial="2" gDNA_strand="+"/>
          <translation>
            <gDNA_template>GCGTTGACGACCCACACCGTTTACACCTCTGACAATATCATGGAACGGCATCTAACGGTGATTAAACCTAGCCGGAGCGACGAAGTTTTAGACGAAGATGAGCAGCTGCGAATCGCCAACCAGGTCAAAGCCTTGTTCGATGCTCAAGCACCTAAAAGACTCGCCAAACCAAATCGAAGCGAACCTGATTCAGTCATCCCCAATTCCCCTTTAGAAGATTTCCCTATTCCAGAACTTGACAATCTCCGATCTCTTCAATCACAG : GGTGGTAGCTTTTTTCCGGAAACTAATTGCTCGGAGCAAGACGAGTCCGTGGAAACTCAGTATTACAATGAGTTGGTTTCCATTGACAAACAGCATCACACG : ACTGGAAGTGGGTTCATAAAGGTGGTCAATCAAACGAATGGAAACATTTACGATCTTCAGTTGAATGGTGGTTATGAGAATGGTAGAGCCAAAGAGTTCAAAACTAATCCGGCGACAAACGACTGGATTCCGAGTAAAGATGATTATCAGGTTTTTGATACATCGAGTTCATTGACTCTCCATGTGTTAAATTATACGAAATAAATTTGTGTTCAGTTTTCATATGTATTGATCAGGTTGGATTCACCTCCTCAAAACCCAGCCGGAGCGAAGGTGATTAGATCGAAAGTGAAGAAAGCAATCAGCTGGTGAAGGTGGTTTGTTCTGTTCTCTTGAATTCGTTTGTTTATCTTGACTGATTGAGAGAGAAAAATGAGGGATGCTAGGATTTCAAGACAGTAAGTAGTTGAGTGTTGTCGTATTTTTAGTCGTATGATTTAGGTATTGCCTAGTTTCTTTTTCTCCAATGTGTATTAAACGCCCAGATTTGCTTTTCTTACCAGA</gDNA_template>
            <first_frame> A  L  T  T  H  T  V  Y  T  S  D  N  I  M  E  R  H  L  T  V  I  K  P  S  R  S  D  E  V  L  D  E  D  E  Q  L  R  I  A  N  Q  V  K  A  L  F  D  A  Q  A  P  K  R  L  A  K  P  N  R  S  E  P  D  S  V  I  P  N  S  P  L  E  D  F  P  I  P  E  L  D  N  L  R  S  L  Q  S  Q  :  G  G  S  F  F  P  E  T  N  C  S  E  Q  D  E  S  V  E  T  Q  Y  Y  N  E  L  V  S  I  D  K  Q  H  H  T  :  T  G  S  G  F  I  K  V  V  N  Q  T  N  G  N  I  Y  D  L  Q  L  N  G  G  Y  E  N  G  R  A  K  E  F  K  T  N  P  A  T  N  D  W  I  P  S  K  D  D  Y  Q  V  F  D  T  S  S  S  L  T  L  H  V  L  N  Y  T  K  *  I  C  V  Q  F  S  Y  V  L  I  R  L  D  S  P  P  Q  N  P  A  G  A  K  V  I  R  S  K  V  K  K  A  I  S  W  *  R  W  F  V  L  F  S  *  I  R  L  F  I  L  T  D  *  E  R  K  M  R  D  A  R  I  S  R  Q  *  V  V  E  C  C  R  I  F  S  R  M  I  *  V  L  P  S  F  F  F  S  N  V  Y  *  T  P  R  F  A  F  L  T  R </first_frame>
            <second_frame>  R  *  R  P  T  P  F  T  P  L  T  I  S  W  N  G  I  *  R  *  L  N  L  A  G  A  T  K  F  *  T  K  M  S  S  C  E  S  P  T  R  S  K  P  C  S  M  L  K  H  L  K  D  S  P  N  Q  I  E  A  N  L  I  Q  S  S  P  I  P  L  *  K  I  S  L  F  Q  N  L  T  I  S  D  L  F  N  H  R :   V  V  A  F  F  R  K  L  I  A  R  S  K  T  S  P  W  K  L  S  I  T  M  S  W  F  P  L  T  N  S  I  T  R :   L  E  V  G  S  *  R  W  S  I  K  R  M  E  T  F  T  I  F  S  *  M  V  V  M  R  M  V  E  P  K  S  S  K  L  I  R  R  Q  T  T  G  F  R  V  K  M  I  I  R  F  L  I  H  R  V  H  *  L  S  M  C  *  I  I  R  N  K  F  V  F  S  F  H  M  Y  *  S  G  W  I  H  L  L  K  T  Q  P  E  R  R  *  L  D  R  K  *  R  K  Q  S  A  G  E  G  G  L  F  C  S  L  E  F  V  C  L  S  *  L  I  E  R  E  K  *  G  M  L  G  F  Q  D  S  K  *  L  S  V  V  V  F  L  V  V  *  F  R  Y  C  L  V  S  F  S  P  M  C  I  K  R  P  D  L  L  F  L  P   </second_frame>
            <third_frame>   V  D  D  P  H  R  L  H  L  *  Q  Y  H  G  T  A  S  N  G  D  *  T  *  P  E  R  R  S  F  R  R  R  *  A  A  A  N  R  Q  P  G  Q  S  L  V  R  C  S  S  T  *  K  T  R  Q  T  K  S  K  R  T  *  F  S  H  P  Q  F  P  F  R  R  F  P  Y  S  R  T  *  Q  S  P  I  S  S  I  T   : G  W  *  L  F  S  G  N  *  L  L  G  A  R  R  V  R  G  N  S  V  L  Q  *  V  G  F  H  *  Q  T  A  S  H   : D  W  K  W  V  H  K  G  G  Q  S  N  E  W  K  H  L  R  S  S  V  E  W  W  L  *  E  W  *  S  Q  R  V  Q  N  *  S  G  D  K  R  L  D  S  E  *  R  *  L  S  G  F  *  Y  I  E  F  I  D  S  P  C  V  K  L  Y  E  I  N  L  C  S  V  F  I  C  I  D  Q  V  G  F  T  S  S  K  P  S  R  S  E  G  D  *  I  E  S  E  E  S  N  Q  L  V  K  V  V  C  S  V  L  L  N  S  F  V  Y  L  D  *  L  R  E  K  N  E  G  C  *  D  F  K  T  V  S  S  *  V  L  S  Y  F  *  S  Y  D  L  G  I  A  *  F  L  F  L  Q  C  V  L  N  A  Q  I  C  F  S  Y  Q  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02SLe0017H17.1" strand="+"/>
                <serials PGL_serial="5" AGS_serial="2" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="37539" stop="37802"/>
                    <exon start="37875" stop="37976"/>
                    <exon start="38124" stop="38327"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>567</number_coding_nucleotides>
                  <number_encoded_amino_acids>189</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>ALTTHTVYTSDNIMERHLTVIKPSRSDEVLDEDEQLRIANQVKALFDAQAPKRLAKPNRSEPDSVIPNSPLEDFPIPELDNLRSLQSQGGSFFPETNCSEQDESVETQYYNELVSIDKQHHTTGSGFIKVVNQTNGNIYDLQLNGGYENGRAKEFKTNPATNDWIPSKDDYQVFDTSSSLTLHVLNYTK*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="3">
          <exon_coordinates>
            <exon e_start="37552" e_stop="37802"/>
            <exon e_start="37875" e_stop="38189"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="1.000" acc_prob="0.973" e_score="0.996"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.996">
            <gDNA_exon_boundary e_start="37552" e_stop="37802" e_length="251"/>
          </exon>
          <intron i_serial="1" don_prob="1.000" acc_prob="0.973">
            <gDNA_intron_boundary i_start="37803" i_stop="37874" i_length="72"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="37875" e_stop="38189" e_length="315"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="37552" stop="37802"/>
              <exon start="37875" stop="38189"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E249713" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="5" AGS_serial="3" gDNA_strand="+"/>
          <translation>
            <gDNA_template>ACACCGTTTACACCTCTGACAATATCATGGAACGGCATCTAACGGTGATTAAACCTAGCCGGAGCGACGAAGTTTTAGACGAAGATGAGCAGCTGCGAATCGCCAACCAGGTCAAAGCCTTGTTCGATGCTCAAGCACCTAAAAGACTCGCCAAACCAAATCGAAGCGAACCTGATTCAGTCATCCCCAATTCCCCTTTAGAAGATTTCCCTATTCCAGAACTTGACAATCTCCGATCTCTTCAATCACAG : GGTGGTAGCTTTTTTCCGGAAACTAATTGCTCGGAGCAAGACGAGTCCGTGGAAACTCAGTATTACAATGAGTTGGTTTCCATTGACAAACAGCATCACACGGTTCTCTACTCGTCTCTTTCGCACGAAACGATTTACTACTTTTGAATTTATGATTACCTTTATTTTCTGGGTTCAATTGAATCATATTCAATATAGTCTCGATCCAGGATACGGAGATTGTTTATGTTATTCACTATTTGTTGGCAGACTGGAAGTGGGTTCATAAAGGTGGTCAATCAAACGAATGGAAACATTTACGATCTTCAGTTGAAT</gDNA_template>
            <first_frame> T  P  F  T  P  L  T  I  S  W  N  G  I  *  R  *  L  N  L  A  G  A  T  K  F  *  T  K  M  S  S  C  E  S  P  T  R  S  K  P  C  S  M  L  K  H  L  K  D  S  P  N  Q  I  E  A  N  L  I  Q  S  S  P  I  P  L  *  K  I  S  L  F  Q  N  L  T  I  S  D  L  F  N  H  R :   V  V  A  F  F  R  K  L  I  A  R  S  K  T  S  P  W  K  L  S  I  T  M  S  W  F  P  L  T  N  S  I  T  R  F  S  T  R  L  F  R  T  K  R  F  T  T  F  E  F  M  I  T  F  I  F  W  V  Q  L  N  H  I  Q  Y  S  L  D  P  G  Y  G  D  C  L  C  Y  S  L  F  V  G  R  L  E  V  G  S  *  R  W  S  I  K  R  M  E  T  F  T  I  F  S  *   </first_frame>
            <second_frame>  H  R  L  H  L  *  Q  Y  H  G  T  A  S  N  G  D  *  T  *  P  E  R  R  S  F  R  R  R  *  A  A  A  N  R  Q  P  G  Q  S  L  V  R  C  S  S  T  *  K  T  R  Q  T  K  S  K  R  T  *  F  S  H  P  Q  F  P  F  R  R  F  P  Y  S  R  T  *  Q  S  P  I  S  S  I  T   : G  W  *  L  F  S  G  N  *  L  L  G  A  R  R  V  R  G  N  S  V  L  Q  *  V  G  F  H  *  Q  T  A  S  H  G  S  L  L  V  S  F  A  R  N  D  L  L  L  L  N  L  *  L  P  L  F  S  G  F  N  *  I  I  F  N  I  V  S  I  Q  D  T  E  I  V  Y  V  I  H  Y  L  L  A  D  W  K  W  V  H  K  G  G  Q  S  N  E  W  K  H  L  R  S  S  V  E  </second_frame>
            <third_frame>   T  V  Y  T  S  D  N  I  M  E  R  H  L  T  V  I  K  P  S  R  S  D  E  V  L  D  E  D  E  Q  L  R  I  A  N  Q  V  K  A  L  F  D  A  Q  A  P  K  R  L  A  K  P  N  R  S  E  P  D  S  V  I  P  N  S  P  L  E  D  F  P  I  P  E  L  D  N  L  R  S  L  Q  S  Q  :  G  G  S  F  F  P  E  T  N  C  S  E  Q  D  E  S  V  E  T  Q  Y  Y  N  E  L  V  S  I  D  K  Q  H  H  T  V  L  Y  S  S  L  S  H  E  T  I  Y  Y  F  *  I  Y  D  Y  L  Y  F  L  G  S  I  E  S  Y  S  I  *  S  R  S  R  I  R  R  L  F  M  L  F  T  I  C  W  Q  T  G  S  G  F  I  K  V  V  N  Q  T  N  G  N  I  Y  D  L  Q  L  N </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02SLe0017H17.1" strand="+"/>
                <serials PGL_serial="5" AGS_serial="3" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="37554" stop="37802"/>
                    <exon start="37875" stop="38021"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>393</number_coding_nucleotides>
                  <number_encoded_amino_acids>131</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>TVYTSDNIMERHLTVIKPSRSDEVLDEDEQLRIANQVKALFDAQAPKRLAKPNRSEPDSVIPNSPLEDFPIPELDNLRSLQSQGGSFFPETNCSEQDESVETQYYNELVSIDKQHHTVLYSSLSHETIYYF*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C02SLe0017H17.1" strand="+"/>
                <serials PGL_serial="5" AGS_serial="3" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="37753" stop="37802"/>
                    <exon start="37875" stop="38142"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>315</number_coding_nucleotides>
                  <number_encoded_amino_acids>105</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>KISLFQNLTISDLFNHRVVAFFRKLIARSKTSPWKLSITMSWFPLTNSITRFSTRLFRTKRFTTFEFMITFIFWVQLNHIQYSLDPGYGDCLCYSLFVGRLEVGS*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="6" PGL_strand="-" PGL_start="47071" PGL_stop="45278"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="47071" e_stop="46180"/>
            <exon e_start="46079" e_stop="45278"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.807" acc_prob="0.995" e_score="0.998"/>
          <exon-only e_score="0.977"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.998">
            <gDNA_exon_boundary e_start="47071" e_stop="46180" e_length="892"/>
          </exon>
          <intron i_serial="1" don_prob="0.807" acc_prob="0.995">
            <gDNA_intron_boundary i_start="46179" i_stop="46080" i_length="100"/>
          </intron>
          <exon e_serial="2" e_score="0.977">
            <gDNA_exon_boundary e_start="46079" e_stop="45278" e_length="802"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="47071" stop="46485"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E355583" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="47071" stop="46593"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E354737" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="47071" stop="46703"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E355803" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="47070" stop="46824"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E355565" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="47069" stop="46504"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E355665" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="47068" stop="46593"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E358675" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="47068" stop="46612"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E357990" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="47065" stop="46597"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E359506" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="47063" stop="46486"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E358808" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="47063" stop="46486"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E355591" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="47063" stop="46544"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E359406" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="47061" stop="46377"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E549299" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="47061" stop="46407"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E549385" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="47061" stop="46593"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E358861" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="47061" stop="46625"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E355617" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="47059" stop="46377"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E546363" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="47059" stop="46555"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E357208" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="47059" stop="46592"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E358544" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="47058" stop="46625"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E358247" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="47057" stop="46180"/>
              <exon start="46079" stop="46014"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E703127" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="47057" stop="46233"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E700498" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="47057" stop="46488"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E358500" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="47057" stop="46680"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E354670" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="47056" stop="46484"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E358048" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="47054" stop="46367"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E214721" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="47053" stop="46465"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E359055" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="47053" stop="46487"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E355999" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="47053" stop="46504"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E358817" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="47051" stop="46503"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E207980" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="47012" stop="46486"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E355691" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="46977" stop="46487"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E206855" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="46920" stop="46477"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E287761" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="46901" stop="46283"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E358323" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="46829" stop="46329"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E285800" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="46458" stop="46180"/>
              <exon start="46079" stop="45641"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E379796" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="46264" stop="46180"/>
              <exon start="46079" stop="45756"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E283518" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="46206" stop="46180"/>
              <exon start="46079" stop="45278"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E546515" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="46183" stop="46180"/>
              <exon start="46079" stop="45293"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E549352" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="46077" stop="45397"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E379429" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="45950" stop="45279"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E546522" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="45799" stop="45281"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E353986" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="6" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>GCAAATAATGGAAGTAACTTTGTTGTATAGTACTTCACTCTCTATTTTGTTTGTGCTTCTACTTGTTAAACTTGTTTCATCAAAACGAAGAAAACTGAATCTACCACCAAGCCCATTGCTTAAACTTCCAATATTAGGCCATCTCTATCTCCTTAAACCACCTCTATATCGCACTCTTGCTAATCTCTCAACAAAATATGGCCCTGTTTTCTCTCTTCAATTAGGTACCCGTCTTGTTGTAGCAATTTCCTCACCATCTGCTGCCGAAGAATGTTTCACCAAAAATGATATCGTTTTTGCTAATCGCCCTCGGACAATGACTGCAAAATTCATAGGCTATAACTCTACTACTGTCGTTGGTTCTCCTTATGGTGATCACTGGCGCTATCTTCGCCGCCTCTACGCACTTGAAATATTCTCCACTAATCGTCTCAACAATTTTCAGTCCACTAGACAAGATGAGATCAGACTTTTAGTTCAAAGAGTGTTTCACAAATCTGGAGACAATTTTGTGACTCCTGTTGAGCTTAAGTCCAAGCTTTTTCAGATGTCGTATAATATTATCATGAGAATGGTAGCTGGAAAAAGATATTACGGTGAAGAGATAGATAACGAGGAGGCAAATCATTTTCGGGTGCTTGTAGAAGAGGTTATTTCGTTTGGGGGTGTATCAAATGCCGCGGATTTCATGCCTGCAATATTTCTGTTGTTTTTCAGGAGTACGGAGAAAAAAATAGCAAAGCTTGGTAATAAGATGGACAAGCTCTTGCAAGGTTTGGTTGATGAACATCGCCGCGATAAAAGCAGGAATACTATGATTGATCATTTGCTTTCTTTGCAAGAATCAGAACCAGAGTATTACACTGACCAGATCATCAAAGGGATTGTTTTG : GTCATGCTGAATGCGGGGACTGAAACATCATCTGTGACAATAGAATGGGCGATGTCTCTTCTACTGAACCATCCAGAGGTGTTGGAGAAGGCCAGAAATGAAATAGACAACCATGTGGGTAAGGATCGTTTGATGGATGAAGCGGATTTACCCAAGCTGAAATACCTTCAAAGTATTATCTCCGAGACACTACGATTGTTCCCAGCAGCACCATTGCTAGTGCCTCATGAGTCATCTGAGGATTGCAAGGTCGCTGGCTTCCACATTCCACGAGGCACGATGCTACTGGTGAATGCTTGGTCCATCCACAGGGATCCTTTACTTTGGGAGGATCCAGAGAGCTTCAAGCCAGAAAGGTTTTATGGTGTGGAAGTGGAATCATGGAAGTTATTGCCTTTTGGAATGGGAAGGAGAGCTTGCCCTGGCTCCGGACTTGCTCAACGTGTGGTTGGTTTAGCTTTAGGAACTTTAGTGCAGTGTTTTGAATGGAAAAGGGTAAGCGATGAGAAGGTCGATTTGACAGAAGGAAAAGGTCTCACTATGCCAAAAGCTGAGCCACTCATGGCTAGATGCAAAGCTCGTGAAATTGTTCACAAAGTTCTTTCGGAAACATCCTAATGTTTTTCTTGCATGTTGTTAGTTTAGAAAGGTTTGAATAAGTCATGTATCATGTATCTTCATTGTGTCATATACTATGCAATATCTGAGTTTCTGATTTATCATTCAGATACTTTGGTATAATATACATACGAGGTGCTACGGATTTAATGGATTCAATTGAAATCATCTCAAATATATGCAT</gDNA_template>
            <first_frame> A  N  N  G  S  N  F  V  V  *  Y  F  T  L  Y  F  V  C  A  S  T  C  *  T  C  F  I  K  T  K  K  T  E  S  T  T  K  P  I  A  *  T  S  N  I  R  P  S  L  S  P  *  T  T  S  I  S  H  S  C  *  S  L  N  K  I  W  P  C  F  L  S  S  I  R  Y  P  S  C  C  S  N  F  L  T  I  C  C  R  R  M  F  H  Q  K  *  Y  R  F  C  *  S  P  S  D  N  D  C  K  I  H  R  L  *  L  Y  Y  C  R  W  F  S  L  W  *  S  L  A  L  S  S  P  P  L  R  T  *  N  I  L  H  *  S  S  Q  Q  F  S  V  H  *  T  R  *  D  Q  T  F  S  S  K  S  V  S  Q  I  W  R  Q  F  C  D  S  C  *  A  *  V  Q  A  F  S  D  V  V  *  Y  Y  H  E  N  G  S  W  K  K  I  L  R  *  R  D  R  *  R  G  G  K  S  F  S  G  A  C  R  R  G  Y  F  V  W  G  C  I  K  C  R  G  F  H  A  C  N  I  S  V  V  F  Q  E  Y  G  E  K  N  S  K  A  W  *  *  D  G  Q  A  L  A  R  F  G  *  *  T  S  P  R  *  K  Q  E  Y  Y  D  *  S  F  A  F  F  A  R  I  R  T  R  V  L  H  *  P  D  H  Q  R  D  C  F   : G  H  A  E  C  G  D  *  N  I  I  C  D  N  R  M  G  D  V  S  S  T  E  P  S  R  G  V  G  E  G  Q  K  *  N  R  Q  P  C  G  *  G  S  F  D  G  *  S  G  F  T  Q  A  E  I  P  S  K  Y  Y  L  R  D  T  T  I  V  P  S  S  T  I  A  S  A  S  *  V  I  *  G  L  Q  G  R  W  L  P  H  S  T  R  H  D  A  T  G  E  C  L  V  H  P  Q  G  S  F  T  L  G  G  S  R  E  L  Q  A  R  K  V  L  W  C  G  S  G  I  M  E  V  I  A  F  W  N  G  K  E  S  L  P  W  L  R  T  C  S  T  C  G  W  F  S  F  R  N  F  S  A  V  F  *  M  E  K  G  K  R  *  E  G  R  F  D  R  R  K  R  S  H  Y  A  K  S  *  A  T  H  G  *  M  Q  S  S  *  N  C  S  Q  S  S  F  G  N  I  L  M  F  F  L  H  V  V  S  L  E  R  F  E  *  V  M  Y  H  V  S  S  L  C  H  I  L  C  N  I  *  V  S  D  L  S  F  R  Y  F  G  I  I  Y  I  R  G  A  T  D  L  M  D  S  I  E  I  I  S  N  I  C   </first_frame>
            <second_frame>  Q  I  M  E  V  T  L  L  Y  S  T  S  L  S  I  L  F  V  L  L  L  V  K  L  V  S  S  K  R  R  K  L  N  L  P  P  S  P  L  L  K  L  P  I  L  G  H  L  Y  L  L  K  P  P  L  Y  R  T  L  A  N  L  S  T  K  Y  G  P  V  F  S  L  Q  L  G  T  R  L  V  V  A  I  S  S  P  S  A  A  E  E  C  F  T  K  N  D  I  V  F  A  N  R  P  R  T  M  T  A  K  F  I  G  Y  N  S  T  T  V  V  G  S  P  Y  G  D  H  W  R  Y  L  R  R  L  Y  A  L  E  I  F  S  T  N  R  L  N  N  F  Q  S  T  R  Q  D  E  I  R  L  L  V  Q  R  V  F  H  K  S  G  D  N  F  V  T  P  V  E  L  K  S  K  L  F  Q  M  S  Y  N  I  I  M  R  M  V  A  G  K  R  Y  Y  G  E  E  I  D  N  E  E  A  N  H  F  R  V  L  V  E  E  V  I  S  F  G  G  V  S  N  A  A  D  F  M  P  A  I  F  L  L  F  F  R  S  T  E  K  K  I  A  K  L  G  N  K  M  D  K  L  L  Q  G  L  V  D  E  H  R  R  D  K  S  R  N  T  M  I  D  H  L  L  S  L  Q  E  S  E  P  E  Y  Y  T  D  Q  I  I  K  G  I  V  L  :  V  M  L  N  A  G  T  E  T  S  S  V  T  I  E  W  A  M  S  L  L  L  N  H  P  E  V  L  E  K  A  R  N  E  I  D  N  H  V  G  K  D  R  L  M  D  E  A  D  L  P  K  L  K  Y  L  Q  S  I  I  S  E  T  L  R  L  F  P  A  A  P  L  L  V  P  H  E  S  S  E  D  C  K  V  A  G  F  H  I  P  R  G  T  M  L  L  V  N  A  W  S  I  H  R  D  P  L  L  W  E  D  P  E  S  F  K  P  E  R  F  Y  G  V  E  V  E  S  W  K  L  L  P  F  G  M  G  R  R  A  C  P  G  S  G  L  A  Q  R  V  V  G  L  A  L  G  T  L  V  Q  C  F  E  W  K  R  V  S  D  E  K  V  D  L  T  E  G  K  G  L  T  M  P  K  A  E  P  L  M  A  R  C  K  A  R  E  I  V  H  K  V  L  S  E  T  S  *  C  F  S  C  M  L  L  V  *  K  G  L  N  K  S  C  I  M  Y  L  H  C  V  I  Y  Y  A  I  S  E  F  L  I  Y  H  S  D  T  L  V  *  Y  T  Y  E  V  L  R  I  *  W  I  Q  L  K  S  S  Q  I  Y  A  </second_frame>
            <third_frame>   K  *  W  K  *  L  C  C  I  V  L  H  S  L  F  C  L  C  F  Y  L  L  N  L  F  H  Q  N  E  E  N  *  I  Y  H  Q  A  H  C  L  N  F  Q  Y  *  A  I  S  I  S  L  N  H  L  Y  I  A  L  L  L  I  S  Q  Q  N  M  A  L  F  S  L  F  N  *  V  P  V  L  L  *  Q  F  P  H  H  L  L  P  K  N  V  S  P  K  M  I  S  F  L  L  I  A  L  G  Q  *  L  Q  N  S  *  A  I  T  L  L  L  S  L  V  L  L  M  V  I  T  G  A  I  F  A  A  S  T  H  L  K  Y  S  P  L  I  V  S  T  I  F  S  P  L  D  K  M  R  S  D  F  *  F  K  E  C  F  T  N  L  E  T  I  L  *  L  L  L  S  L  S  P  S  F  F  R  C  R  I  I  L  S  *  E  W  *  L  E  K  D  I  T  V  K  R  *  I  T  R  R  Q  I  I  F  G  C  L  *  K  R  L  F  R  L  G  V  Y  Q  M  P  R  I  S  C  L  Q  Y  F  C  C  F  S  G  V  R  R  K  K  *  Q  S  L  V  I  R  W  T  S  S  C  K  V  W  L  M  N  I  A  A  I  K  A  G  I  L  *  L  I  I  C  F  L  C  K  N  Q  N  Q  S  I  T  L  T  R  S  S  K  G  L  F  W :   S  C  *  M  R  G  L  K  H  H  L  *  Q  *  N  G  R  C  L  F  Y  *  T  I  Q  R  C  W  R  R  P  E  M  K  *  T  T  M  W  V  R  I  V  *  W  M  K  R  I  Y  P  S  *  N  T  F  K  V  L  S  P  R  H  Y  D  C  S  Q  Q  H  H  C  *  C  L  M  S  H  L  R  I  A  R  S  L  A  S  T  F  H  E  A  R  C  Y  W  *  M  L  G  P  S  T  G  I  L  Y  F  G  R  I  Q  R  A  S  S  Q  K  G  F  M  V  W  K  W  N  H  G  S  Y  C  L  L  E  W  E  G  E  L  A  L  A  P  D  L  L  N  V  W  L  V  *  L  *  E  L  *  C  S  V  L  N  G  K  G  *  A  M  R  R  S  I  *  Q  K  E  K  V  S  L  C  Q  K  L  S  H  S  W  L  D  A  K  L  V  K  L  F  T  K  F  F  R  K  H  P  N  V  F  L  A  C  C  *  F  R  K  V  *  I  S  H  V  S  C  I  F  I  V  S  Y  T  M  Q  Y  L  S  F  *  F  I  I  Q  I  L  W  Y  N  I  H  T  R  C  Y  G  F  N  G  F  N  *  N  H  L  K  Y  M  H </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02SLe0017H17.1" strand="-"/>
                <serials PGL_serial="6" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="47070" stop="46180"/>
                    <exon start="46079" stop="45462"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>1506</number_coding_nucleotides>
                  <number_encoded_amino_acids>502</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>QIMEVTLLYSTSLSILFVLLLVKLVSSKRRKLNLPPSPLLKLPILGHLYLLKPPLYRTLANLSTKYGPVFSLQLGTRLVVAISSPSAAEECFTKNDIVFANRPRTMTAKFIGYNSTTVVGSPYGDHWRYLRRLYALEIFSTNRLNNFQSTRQDEIRLLVQRVFHKSGDNFVTPVELKSKLFQMSYNIIMRMVAGKRYYGEEIDNEEANHFRVLVEEVISFGGVSNAADFMPAIFLLFFRSTEKKIAKLGNKMDKLLQGLVDEHRRDKSRNTMIDHLLSLQESEPEYYTDQIIKGIVLVMLNAGTETSSVTIEWAMSLLLNHPEVLEKARNEIDNHVGKDRLMDEADLPKLKYLQSIISETLRLFPAAPLLVPHESSEDCKVAGFHIPRGTMLLVNAWSIHRDPLLWEDPESFKPERFYGVEVESWKLLPFGMGRRACPGSGLAQRVVGLALGTLVQCFEWKRVSDEKVDLTEGKGLTMPKAEPLMARCKAREIVHKVLSETS*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="7" PGL_strand="-" PGL_start="57294" PGL_stop="54673"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="57294" e_stop="55225"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.999"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.999">
            <gDNA_exon_boundary e_start="57294" e_stop="55225" e_length="2070"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="57294" stop="56516"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E698108" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="57291" stop="56701"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E314854" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="57239" stop="56449"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E720102" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="57096" stop="56266"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E705685" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="57096" stop="56280"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E706144" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="56426" stop="55582"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E699757" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="56038" stop="55225"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E539101" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="56037" stop="55585"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E281011" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="7" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>CTCTGCTAAACAAGAATTTTCTATACTTAATAATACTCTGTTCTCTACTTTTTAGGGCATTTCTTCTTCTCTGCAATTTTTTCAAGTCCAGTTTTCATCAGATGCTGTCACCTTACTCCGACGAGTCGCCGGGCGCCGATGAAGCTATGCGCAAACCTCTAAAAACTAACAACAATGATTTTCTAAAGAATGCTGTGAGTAATTTTCAGTATCAGATTTCTACTCATCCTCGTTTCTGGCTTTTTACCTTCTTCCTTTTTTTTCAACTTGTGGTGCTTATCTTTACTCGCAATTCCCCTTTCCCTTTCTCAGTTCATTCCCCACCCAGTCCTCTCCCCCAATTCCCTTCAGAAATCGATGTATTTCCCGATTTACAGACAGCCCATCACGATGCAAATGTAATTTATCCCTTCGGCGATTCTGAATGCGAGTATGGTCGGGTCTATGTCTATAATTTACCATCCAAATTTAACAAAGATTTAGCTTTGTTGACCTGTGACGATCTAGACCCATGGAAGTGGCAGTGTGGTCTTGTGACCAATGATGGATATGGAAAGAGATCGACGGAGCTCGCCGGAATCTTGCCGGGGAATCTCTCCGCAGCGTGGTATCGTACAAATCAGTTCTCATCAGAGGTAATATTTCATTACCGGCTTTTAAACTATAGATGTAGAACCAACGACCCAGAATCTGCTACGGCTTTCTACATTCCGTTCTACGCCGGACAGGCTGTTGGGAAATACCTTTGGACTGATGAAATTGAAAATCGTGATTTTCTTAGCAACAAATTACTGAAATGGGTTCAAAGGCAAAAGTATTGGAAAAAATATAAGGGTTTGGACCATTTCCTCACACTTGGTCGGATAACGTGGGATTTCCGGCGATTAGGTGACCCAGAAAAACTCTGGGGATCCTCTTTTCTAAATCGACCGCAGATGCAGAATGTTACGCGATTCACAATCGAGAAGGCTCCATGGGATGCAAACGATATCAGTGTACCTTACCCTACCGGATTCCACCCTCATTCCGAGAAAGAACTCCGAGAATGGCAAAAGTTTGCACTTTCATATAACCGCACCAGTCTATTCACCTTCATAGGGGCGGCGCGTGGGGATATCGATAGTGATTTCAGATCGAGGTTAATGAGTTACTGTAGGAACGAGTCAGACTCGTGCCGAGTTGTGGACTGTGCCGTGATTCCCTGCTCTAACGGTTCATCAGAAATCCAAAAAGCACTTCTGAGCTCAGACTTCTGTTTACAGCCCAAAGGGGACAGCTTGACTCGGCGGTCAGTTTTTGATTGCATGGTGGCTGGTTCAGTACCGGTTTTCTTCTGGAGGCGAACGGCTTACACTCAGTACCAGTGGTTTTTGCCGGAAGACCCGGGGAGTTATTCCGTGTTTATAGACCCGGAAGCAGTGAGAAATGGGACAGCTTCCATTAAGGAAATTTTGATGAGTTACAGTAAAGATCAAGTAAGGAAAATGAGGGAAAAAGTTGTAGAGACAATTCCAAGAATAGTGTATGCAAGGCCAAGTGGAGGTCTTGGGAGTGTCAAGGATGCATTTGAAATTGCAATCGAAGGAGTATTGAAGAGGGTCAAGGACGAAAACGAATGGAAGGAATACGTGGATATGGGCAGTTGAAGATGATGTTGGGAGATTTGATGAATGTTGTAAAGTATATAAATCTTTCCCTTAATATTCAGCTATACATACTGTTATAAATACAGGGACAAATTTGAAGCCAGACGGGTAATTCTATATGGCTGGTGATATGATTCTTGGTTTTCAGAATCCAGCTTAGGTTGCTGGATGATGGAGAGCTTGGATTTTATACATGTATTTCCAGATATTTTTAGAGATTTGTGTTGAGATCAGAGGAAAAAAGTGAGGTCAATTGTTGTTTATTTGCAGGTAAGATATATATTGATCAGATTTTGGCAATTCTTGTTTCAGTTCCGTGTACTAAAATAACGTTTCATATAGATCAACATTTCAGCTTGTTACTTTCTACCTAATGCAAACAAGTTGTTTGGTAGATAGTAAGGAGCTAAGTTATTGCTGCATT</gDNA_template>
            <first_frame> L  C  *  T  R  I  F  Y  T  *  *  Y  S  V  L  Y  F  L  G  H  F  F  F  S  A  I  F  S  S  P  V  F  I  R  C  C  H  L  T  P  T  S  R  R  A  P  M  K  L  C  A  N  L  *  K  L  T  T  M  I  F  *  R  M  L  *  V  I  F  S  I  R  F  L  L  I  L  V  S  G  F  L  P  S  S  F  F  F  N  L  W  C  L  S  L  L  A  I  P  L  S  L  S  Q  F  I  P  H  P  V  L  S  P  N  S  L  Q  K  S  M  Y  F  P  I  Y  R  Q  P  I  T  M  Q  M  *  F  I  P  S  A  I  L  N  A  S  M  V  G  S  M  S  I  I  Y  H  P  N  L  T  K  I  *  L  C  *  P  V  T  I  *  T  H  G  S  G  S  V  V  L  *  P  M  M  D  M  E  R  D  R  R  S  S  P  E  S  C  R  G  I  S  P  Q  R  G  I  V  Q  I  S  S  H  Q  R  *  Y  F  I  T  G  F  *  T  I  D  V  E  P  T  T  Q  N  L  L  R  L  S  T  F  R  S  T  P  D  R  L  L  G  N  T  F  G  L  M  K  L  K  I  V  I  F  L  A  T  N  Y  *  N  G  F  K  G  K  S  I  G  K  N  I  R  V  W  T  I  S  S  H  L  V  G  *  R  G  I  S  G  D  *  V  T  Q  K  N  S  G  D  P  L  F  *  I  D  R  R  C  R  M  L  R  D  S  Q  S  R  R  L  H  G  M  Q  T  I  S  V  Y  L  T  L  P  D  S  T  L  I  P  R  K  N  S  E  N  G  K  S  L  H  F  H  I  T  A  P  V  Y  S  P  S  *  G  R  R  V  G  I  S  I  V  I  S  D  R  G  *  *  V  T  V  G  T  S  Q  T  R  A  E  L  W  T  V  P  *  F  P  A  L  T  V  H  Q  K  S  K  K  H  F  *  A  Q  T  S  V  Y  S  P  K  G  T  A  *  L  G  G  Q  F  L  I  A  W  W  L  V  Q  Y  R  F  S  S  G  G  E  R  L  T  L  S  T  S  G  F  C  R  K  T  R  G  V  I  P  C  L  *  T  R  K  Q  *  E  M  G  Q  L  P  L  R  K  F  *  *  V  T  V  K  I  K  *  G  K  *  G  K  K  L  *  R  Q  F  Q  E  *  C  M  Q  G  Q  V  E  V  L  G  V  S  R  M  H  L  K  L  Q  S  K  E  Y  *  R  G  S  R  T  K  T  N  G  R  N  T  W  I  W  A  V  E  D  D  V  G  R  F  D  E  C  C  K  V  Y  K  S  F  P  *  Y  S  A  I  H  T  V  I  N  T  G  T  N  L  K  P  D  G  *  F  Y  M  A  G  D  M  I  L  G  F  Q  N  P  A  *  V  A  G  *  W  R  A  W  I  L  Y  M  Y  F  Q  I  F  L  E  I  C  V  E  I  R  G  K  K  *  G  Q  L  L  F  I  C  R  *  D  I  Y  *  S  D  F  G  N  S  C  F  S  S  V  Y  *  N  N  V  S  Y  R  S  T  F  Q  L  V  T  F  Y  L  M  Q  T  S  C  L  V  D  S  K  E  L  S  Y  C  C  I </first_frame>
            <second_frame>  S  A  K  Q  E  F  S  I  L  N  N  T  L  F  S  T  F  *  G  I  S  S  S  L  Q  F  F  Q  V  Q  F  S  S  D  A  V  T  L  L  R  R  V  A  G  R  R  *  S  Y  A  Q  T  S  K  N  *  Q  Q  *  F  S  K  E  C  C  E  *  F  S  V  S  D  F  Y  S  S  S  F  L  A  F  Y  L  L  P  F  F  S  T  C  G  A  Y  L  Y  S  Q  F  P  F  P  F  L  S  S  F  P  T  Q  S  S  P  P  I  P  F  R  N  R  C  I  S  R  F  T  D  S  P  S  R  C  K  C  N  L  S  L  R  R  F  *  M  R  V  W  S  G  L  C  L  *  F  T  I  Q  I  *  Q  R  F  S  F  V  D  L  *  R  S  R  P  M  E  V  A  V  W  S  C  D  Q  *  W  I  W  K  E  I  D  G  A  R  R  N  L  A  G  E  S  L  R  S  V  V  S  Y  K  S  V  L  I  R  G  N  I  S  L  P  A  F  K  L  *  M  *  N  Q  R  P  R  I  C  Y  G  F  L  H  S  V  L  R  R  T  G  C  W  E  I  P  L  D  *  *  N  *  K  S  *  F  S  *  Q  Q  I  T  E  M  G  S  K  A  K  V  L  E  K  I  *  G  F  G  P  F  P  H  T  W  S  D  N  V  G  F  P  A  I  R  *  P  R  K  T  L  G  I  L  F  S  K  S  T  A  D  A  E  C  Y  A  I  H  N  R  E  G  S  M  G  C  K  R  Y  Q  C  T  L  P  Y  R  I  P  P  S  F  R  E  R  T  P  R  M  A  K  V  C  T  F  I  *  P  H  Q  S  I  H  L  H  R  G  G  A  W  G  Y  R  *  *  F  Q  I  E  V  N  E  L  L  *  E  R  V  R  L  V  P  S  C  G  L  C  R  D  S  L  L  *  R  F  I  R  N  P  K  S  T  S  E  L  R  L  L  F  T  A  Q  R  G  Q  L  D  S  A  V  S  F  *  L  H  G  G  W  F  S  T  G  F  L  L  E  A  N  G  L  H  S  V  P  V  V  F  A  G  R  P  G  E  L  F  R  V  Y  R  P  G  S  S  E  K  W  D  S  F  H  *  G  N  F  D  E  L  Q  *  R  S  S  K  E  N  E  G  K  S  C  R  D  N  S  K  N  S  V  C  K  A  K  W  R  S  W  E  C  Q  G  C  I  *  N  C  N  R  R  S  I  E  E  G  Q  G  R  K  R  M  E  G  I  R  G  Y  G  Q  L  K  M  M  L  G  D  L  M  N  V  V  K  Y  I  N  L  S  L  N  I  Q  L  Y  I  L  L  *  I  Q  G  Q  I  *  S  Q  T  G  N  S  I  W  L  V  I  *  F  L  V  F  R  I  Q  L  R  L  L  D  D  G  E  L  G  F  Y  T  C  I  S  R  Y  F  *  R  F  V  L  R  S  E  E  K  S  E  V  N  C  C  L  F  A  G  K  I  Y  I  D  Q  I  L  A  I  L  V  S  V  P  C  T  K  I  T  F  H  I  D  Q  H  F  S  L  L  L  S  T  *  C  K  Q  V  V  W  *  I  V  R  S  *  V  I  A  A   </second_frame>
            <third_frame>   L  L  N  K  N  F  L  Y  L  I  I  L  C  S  L  L  F  R  A  F  L  L  L  C  N  F  F  K  S  S  F  H  Q  M  L  S  P  Y  S  D  E  S  P  G  A  D  E  A  M  R  K  P  L  K  T  N  N  N  D  F  L  K  N  A  V  S  N  F  Q  Y  Q  I  S  T  H  P  R  F  W  L  F  T  F  F  L  F  F  Q  L  V  V  L  I  F  T  R  N  S  P  F  P  F  S  V  H  S  P  P  S  P  L  P  Q  F  P  S  E  I  D  V  F  P  D  L  Q  T  A  H  H  D  A  N  V  I  Y  P  F  G  D  S  E  C  E  Y  G  R  V  Y  V  Y  N  L  P  S  K  F  N  K  D  L  A  L  L  T  C  D  D  L  D  P  W  K  W  Q  C  G  L  V  T  N  D  G  Y  G  K  R  S  T  E  L  A  G  I  L  P  G  N  L  S  A  A  W  Y  R  T  N  Q  F  S  S  E  V  I  F  H  Y  R  L  L  N  Y  R  C  R  T  N  D  P  E  S  A  T  A  F  Y  I  P  F  Y  A  G  Q  A  V  G  K  Y  L  W  T  D  E  I  E  N  R  D  F  L  S  N  K  L  L  K  W  V  Q  R  Q  K  Y  W  K  K  Y  K  G  L  D  H  F  L  T  L  G  R  I  T  W  D  F  R  R  L  G  D  P  E  K  L  W  G  S  S  F  L  N  R  P  Q  M  Q  N  V  T  R  F  T  I  E  K  A  P  W  D  A  N  D  I  S  V  P  Y  P  T  G  F  H  P  H  S  E  K  E  L  R  E  W  Q  K  F  A  L  S  Y  N  R  T  S  L  F  T  F  I  G  A  A  R  G  D  I  D  S  D  F  R  S  R  L  M  S  Y  C  R  N  E  S  D  S  C  R  V  V  D  C  A  V  I  P  C  S  N  G  S  S  E  I  Q  K  A  L  L  S  S  D  F  C  L  Q  P  K  G  D  S  L  T  R  R  S  V  F  D  C  M  V  A  G  S  V  P  V  F  F  W  R  R  T  A  Y  T  Q  Y  Q  W  F  L  P  E  D  P  G  S  Y  S  V  F  I  D  P  E  A  V  R  N  G  T  A  S  I  K  E  I  L  M  S  Y  S  K  D  Q  V  R  K  M  R  E  K  V  V  E  T  I  P  R  I  V  Y  A  R  P  S  G  G  L  G  S  V  K  D  A  F  E  I  A  I  E  G  V  L  K  R  V  K  D  E  N  E  W  K  E  Y  V  D  M  G  S  *  R  *  C  W  E  I  *  *  M  L  *  S  I  *  I  F  P  L  I  F  S  Y  T  Y  C  Y  K  Y  R  D  K  F  E  A  R  R  V  I  L  Y  G  W  *  Y  D  S  W  F  S  E  S  S  L  G  C  W  M  M  E  S  L  D  F  I  H  V  F  P  D  I  F  R  D  L  C  *  D  Q  R  K  K  V  R  S  I  V  V  Y  L  Q  V  R  Y  I  L  I  R  F  W  Q  F  L  F  Q  F  R  V  L  K  *  R  F  I  *  I  N  I  S  A  C  Y  F  L  P  N  A  N  K  L  F  G  R  *  *  G  A  K  L  L  L  H  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02SLe0017H17.1" strand="-"/>
                <serials PGL_serial="7" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="57292" stop="55649"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>1641</number_coding_nucleotides>
                  <number_encoded_amino_acids>547</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>LLNKNFLYLIILCSLLFRAFLLLCNFFKSSFHQMLSPYSDESPGADEAMRKPLKTNNNDFLKNAVSNFQYQISTHPRFWLFTFFLFFQLVVLIFTRNSPFPFSVHSPPSPLPQFPSEIDVFPDLQTAHHDANVIYPFGDSECEYGRVYVYNLPSKFNKDLALLTCDDLDPWKWQCGLVTNDGYGKRSTELAGILPGNLSAAWYRTNQFSSEVIFHYRLLNYRCRTNDPESATAFYIPFYAGQAVGKYLWTDEIENRDFLSNKLLKWVQRQKYWKKYKGLDHFLTLGRITWDFRRLGDPEKLWGSSFLNRPQMQNVTRFTIEKAPWDANDISVPYPTGFHPHSEKELREWQKFALSYNRTSLFTFIGAARGDIDSDFRSRLMSYCRNESDSCRVVDCAVIPCSNGSSEIQKALLSSDFCLQPKGDSLTRRSVFDCMVAGSVPVFFWRRTAYTQYQWFLPEDPGSYSVFIDPEAVRNGTASIKEILMSYSKDQVRKMREKVVETIPRIVYARPSGGLGSVKDAFEIAIEGVLKRVKDENEWKEYVDMGS*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="2">
          <exon_coordinates>
            <exon e_start="55510" e_stop="55379"/>
            <exon e_start="55137" e_stop="54673"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.904" acc_prob="0.935" e_score="0.992"/>
          <exon-only e_score="0.985"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.992">
            <gDNA_exon_boundary e_start="55510" e_stop="55379" e_length="132"/>
          </exon>
          <intron i_serial="1" don_prob="0.904" acc_prob="0.935">
            <gDNA_intron_boundary i_start="55378" i_stop="55138" i_length="241"/>
          </intron>
          <exon e_serial="2" e_score="0.985">
            <gDNA_exon_boundary e_start="55137" e_stop="54673" e_length="465"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="55510" stop="55379"/>
              <exon start="55137" stop="54673"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E256888" strand="-"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="7" AGS_serial="2" gDNA_strand="-"/>
          <translation>
            <gDNA_template>TGGTTTTCAGAATCCAGCTTAGGTTGCTGGATGATGGAGAGCTTGGATTTTATACATGTATTTCCAGATATTTTTAGAGATTTGTGTTGAGATCAGAGGAAAAAAGTGAGGTCAATTGTTGTTTATTTGCAG : ATGGCAAAGAGGATCTTTTCACACGAAGTGTTTGGTTGCAAACTCAAGCATGAGGTTTGTACTCTGTTTTAAACTATAGAACTGTTTGTATGCTGGGTTATCGTTCAATGCCCTCTGTTTATATAACATTCTACATTTGATGTGTATAGACAAGAGAAGATATGGTTCTTAGGTTCAAGGACTTGATTGTATTAGTAAATGCTCCGCAACATTCTTCCAGTGAGATTGAACTTTTTGACCTCAATTTAGTATGTGATTACGTTCGTTATGTTTGTACTTTTGATAATTGTTAGGGAGAATTATGGAGAGCCGTTGAAGTACACTCATGGACCATGGTCATTGTTCAGATGTTTGGTGTAGAAATCTTGGTGTGCAAGCTGCTAAATCCAATATAGAAACTACTTGGGAATATGTTATGCTAATATCAACTATCAAGCCTAGCAATTTTTGACCTTATTTTATACT</gDNA_template>
            <first_frame> W  F  S  E  S  S  L  G  C  W  M  M  E  S  L  D  F  I  H  V  F  P  D  I  F  R  D  L  C  *  D  Q  R  K  K  V  R  S  I  V  V  Y  L  Q  :  M  A  K  R  I  F  S  H  E  V  F  G  C  K  L  K  H  E  V  C  T  L  F  *  T  I  E  L  F  V  C  W  V  I  V  Q  C  P  L  F  I  *  H  S  T  F  D  V  Y  R  Q  E  K  I  W  F  L  G  S  R  T  *  L  Y  *  *  M  L  R  N  I  L  P  V  R  L  N  F  L  T  S  I  *  Y  V  I  T  F  V  M  F  V  L  L  I  I  V  R  E  N  Y  G  E  P  L  K  Y  T  H  G  P  W  S  L  F  R  C  L  V  *  K  S  W  C  A  S  C  *  I  Q  Y  R  N  Y  L  G  I  C  Y  A  N  I  N  Y  Q  A  *  Q  F  L  T  L  F  Y  T </first_frame>
            <second_frame>  G  F  Q  N  P  A  *  V  A  G  *  W  R  A  W  I  L  Y  M  Y  F  Q  I  F  L  E  I  C  V  E  I  R  G  K  K  *  G  Q  L  L  F  I  C  R :   W  Q  R  G  S  F  H  T  K  C  L  V  A  N  S  S  M  R  F  V  L  C  F  K  L  *  N  C  L  Y  A  G  L  S  F  N  A  L  C  L  Y  N  I  L  H  L  M  C  I  D  K  R  R  Y  G  S  *  V  Q  G  L  D  C  I  S  K  C  S  A  T  F  F  Q  *  D  *  T  F  *  P  Q  F  S  M  *  L  R  S  L  C  L  Y  F  *  *  L  L  G  R  I  M  E  S  R  *  S  T  L  M  D  H  G  H  C  S  D  V  W  C  R  N  L  G  V  Q  A  A  K  S  N  I  E  T  T  W  E  Y  V  M  L  I  S  T  I  K  P  S  N  F  *  P  Y  F  I   </second_frame>
            <third_frame>   V  F  R  I  Q  L  R  L  L  D  D  G  E  L  G  F  Y  T  C  I  S  R  Y  F  *  R  F  V  L  R  S  E  E  K  S  E  V  N  C  C  L  F  A   : D  G  K  E  D  L  F  T  R  S  V  W  L  Q  T  Q  A  *  G  L  Y  S  V  L  N  Y  R  T  V  C  M  L  G  Y  R  S  M  P  S  V  Y  I  T  F  Y  I  *  C  V  *  T  R  E  D  M  V  L  R  F  K  D  L  I  V  L  V  N  A  P  Q  H  S  S  S  E  I  E  L  F  D  L  N  L  V  C  D  Y  V  R  Y  V  C  T  F  D  N  C  *  G  E  L  W  R  A  V  E  V  H  S  W  T  M  V  I  V  Q  M  F  G  V  E  I  L  V  C  K  L  L  N  P  I  *  K  L  L  G  N  M  L  C  *  Y  Q  L  S  S  L  A  I  F  D  L  I  L  Y  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <none gDNA_id="C02SLe0017H17.1"/>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="8" PGL_strand="+" PGL_start="64593" PGL_stop="65116"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="64593" e_stop="64739"/>
            <exon e_start="64828" e_stop="65116"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.998" acc_prob="1.000" e_score="1.000"/>
          <exon-only e_score="0.993"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="64593" e_stop="64739" e_length="147"/>
          </exon>
          <intron i_serial="1" don_prob="0.998" acc_prob="1.000">
            <gDNA_intron_boundary i_start="64740" i_stop="64827" i_length="88"/>
          </intron>
          <exon e_serial="2" e_score="0.993">
            <gDNA_exon_boundary e_start="64828" e_stop="65116" e_length="289"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="64593" stop="64739"/>
              <exon start="64828" stop="65116"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E715147" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="8" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>AAAAATCATGGCGAGGCGTTGCATGTCGTTTTCTCGAACACTTCTCTCCAGCTGTAGGCCATCAACAGTAAGTTCCTCACCAAGTGTACAATCCCTTCTCGGCCAGCGCCTTCAGTCTCGCCGTTCTCTTTCCACCATTCTCACCAG : GACTAACGGAGTGCTGGGATGCGCCCAATCGCTCTTACCGCTTCACAGCGCTGTGGCAGCCACCCGTCTGACATCACACATTCAAATGGAGGCGCGCACTTGTTGCCAGTTGTCTCAGGGTACCTTTTTCTGTCGCACTTGCCCTGATCGGTAGTTTTCAATTGTGAGTCCTAATTTCCGCACCTAATGCTGATAAAAGTCGCATCTTTGCAAAGTAGTTATTCAGGAGGATCAAAACATTTTGAGTTCTGTTCTCCTTATATAATTGCCCTTTTCTATCTCTTAGAAG</gDNA_template>
            <first_frame> K  N  H  G  E  A  L  H  V  V  F  S  N  T  S  L  Q  L  *  A  I  N  S  K  F  L  T  K  C  T  I  P  S  R  P  A  P  S  V  S  P  F  S  F  H  H  S  H  Q  :  D  *  R  S  A  G  M  R  P  I  A  L  T  A  S  Q  R  C  G  S  H  P  S  D  I  T  H  S  N  G  G  A  H  L  L  P  V  V  S  G  Y  L  F  L  S  H  L  P  *  S  V  V  F  N  C  E  S  *  F  P  H  L  M  L  I  K  V  A  S  L  Q  S  S  Y  S  G  G  S  K  H  F  E  F  C  S  P  Y  I  I  A  L  F  Y  L  L  E  </first_frame>
            <second_frame>  K  I  M  A  R  R  C  M  S  F  S  R  T  L  L  S  S  C  R  P  S  T  V  S  S  S  P  S  V  Q  S  L  L  G  Q  R  L  Q  S  R  R  S  L  S  T  I  L  T  R :   T  N  G  V  L  G  C  A  Q  S  L  L  P  L  H  S  A  V  A  A  T  R  L  T  S  H  I  Q  M  E  A  R  T  C  C  Q  L  S  Q  G  T  F  F  C  R  T  C  P  D  R  *  F  S  I  V  S  P  N  F  R  T  *  C  *  *  K  S  H  L  C  K  V  V  I  Q  E  D  Q  N  I  L  S  S  V  L  L  I  *  L  P  F  S  I  S  *  K </second_frame>
            <third_frame>   K  S  W  R  G  V  A  C  R  F  L  E  H  F  S  P  A  V  G  H  Q  Q  *  V  P  H  Q  V  Y  N  P  F  S  A  S  A  F  S  L  A  V  L  F  P  P  F  S  P   : G  L  T  E  C  W  D  A  P  N  R  S  Y  R  F  T  A  L  W  Q  P  P  V  *  H  H  T  F  K  W  R  R  A  L  V  A  S  C  L  R  V  P  F  S  V  A  L  A  L  I  G  S  F  Q  L  *  V  L  I  S  A  P  N  A  D  K  S  R  I  F  A  K  *  L  F  R  R  I  K  T  F  *  V  L  F  S  L  Y  N  C  P  F  L  S  L  R   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02SLe0017H17.1" strand="+"/>
                <serials PGL_serial="8" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="64594" stop="64739"/>
                    <exon start="64828" stop="64981"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>297</number_coding_nucleotides>
                  <number_encoded_amino_acids>99</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>KIMARRCMSFSRTLLSSCRPSTVSSSPSVQSLLGQRLQSRRSLSTILTRTNGVLGCAQSLLPLHSAVAATRLTSHIQMEARTCCQLSQGTFFCRTCPDR*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="9" PGL_strand="+" PGL_start="69867" PGL_stop="70440"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="69867" e_stop="70440"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="69867" e_stop="70440" e_length="574"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="69867" stop="70206"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E349504" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="69964" stop="70440"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E350835" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="69964" stop="70440"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E357610" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="9" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>GAAAACCTGCTGTACCAAACATTTTGGAGAATTTTCTGTGAACTTTTCCCTGGAAGTACAAAACTGTAAGCTCTAAATTCAATTTGATTTCCTAGTAATTTTTGGGTTGATGTTGGAAATTTCAGAATTCTTGAAAGCCCTGAAAATGATAATTCTATAGGAGAAATTATAGCAGTCCTTACAGTTTTATGTTGATAGAGATCATCTCTTCATTTGAAGTATTTAAATTTTTTGATTGGCTATCACTAGGTGATTACTAATGTTCTACTTTACCAAATAAACCAAATTTACATCTTTCTGATTTTCTAATTTGATTAAAGCCATAAAAGCAGACGTTATAGTCTTCTTTAGTTACCATTTGATGCAGAACTAGTGACAAGTGCACTAGACAGTTATTTCTGTGATGTATACGAAAATGATGTTTATTTGTATTTATTAAAATGTAACTATTTCTCAACATTCAATTATTTGGTTTTAGGCATTGTGAAGAATAGGTTTATGTTGTGGCTAGGAGAAACTCAGGGCAGTTCAACCCTTTGTAGTACTGAAAGCATATCCATTTGTCTATTTCCAT</gDNA_template>
            <first_frame> E  N  L  L  Y  Q  T  F  W  R  I  F  C  E  L  F  P  G  S  T  K  L  *  A  L  N  S  I  *  F  P  S  N  F  W  V  D  V  G  N  F  R  I  L  E  S  P  E  N  D  N  S  I  G  E  I  I  A  V  L  T  V  L  C  *  *  R  S  S  L  H  L  K  Y  L  N  F  L  I  G  Y  H  *  V  I  T  N  V  L  L  Y  Q  I  N  Q  I  Y  I  F  L  I  F  *  F  D  *  S  H  K  S  R  R  Y  S  L  L  *  L  P  F  D  A  E  L  V  T  S  A  L  D  S  Y  F  C  D  V  Y  E  N  D  V  Y  L  Y  L  L  K  C  N  Y  F  S  T  F  N  Y  L  V  L  G  I  V  K  N  R  F  M  L  W  L  G  E  T  Q  G  S  S  T  L  C  S  T  E  S  I  S  I  C  L  F  P  </first_frame>
            <second_frame>  K  T  C  C  T  K  H  F  G  E  F  S  V  N  F  S  L  E  V  Q  N  C  K  L  *  I  Q  F  D  F  L  V  I  F  G  L  M  L  E  I  S  E  F  L  K  A  L  K  M  I  I  L  *  E  K  L  *  Q  S  L  Q  F  Y  V  D  R  D  H  L  F  I  *  S  I  *  I  F  *  L  A  I  T  R  *  L  L  M  F  Y  F  T  K  *  T  K  F  T  S  F  *  F  S  N  L  I  K  A  I  K  A  D  V  I  V  F  F  S  Y  H  L  M  Q  N  *  *  Q  V  H  *  T  V  I  S  V  M  Y  T  K  M  M  F  I  C  I  Y  *  N  V  T  I  S  Q  H  S  I  I  W  F  *  A  L  *  R  I  G  L  C  C  G  *  E  K  L  R  A  V  Q  P  F  V  V  L  K  A  Y  P  F  V  Y  F  H </second_frame>
            <third_frame>   K  P  A  V  P  N  I  L  E  N  F  L  *  T  F  P  W  K  Y  K  T  V  S  S  K  F  N  L  I  S  *  *  F  L  G  *  C  W  K  F  Q  N  S  *  K  P  *  K  *  *  F  Y  R  R  N  Y  S  S  P  Y  S  F  M  L  I  E  I  I  S  S  F  E  V  F  K  F  F  D  W  L  S  L  G  D  Y  *  C  S  T  L  P  N  K  P  N  L  H  L  S  D  F  L  I  *  L  K  P  *  K  Q  T  L  *  S  S  L  V  T  I  *  C  R  T  S  D  K  C  T  R  Q  L  F  L  *  C  I  R  K  *  C  L  F  V  F  I  K  M  *  L  F  L  N  I  Q  L  F  G  F  R  H  C  E  E  *  V  Y  V  V  A  R  R  N  S  G  Q  F  N  P  L  *  Y  *  K  H  I  H  L  S  I  S   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02SLe0017H17.1" strand="+"/>
                <serials PGL_serial="9" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="70218" stop="70439"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>222</number_coding_nucleotides>
                  <number_encoded_amino_acids>74</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>LPFDAELVTSALDSYFCDVYENDVYLYLLKCNYFSTFNYLVLGIVKNRFMLWLGETQGSSTLCSTESISICLFP</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="10" PGL_strand="+" PGL_start="78835" PGL_stop="81285"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="78835" e_stop="79201"/>
            <exon e_start="79381" e_stop="79482"/>
            <exon e_start="79720" e_stop="81285"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="1.000" acc_prob="1.000" e_score="1.000"/>
          <exon-intron don_prob="0.986" acc_prob="0.991" e_score="1.000"/>
          <exon-only e_score="0.984"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="78835" e_stop="79201" e_length="367"/>
          </exon>
          <intron i_serial="1" don_prob="1.000" acc_prob="1.000">
            <gDNA_intron_boundary i_start="79202" i_stop="79380" i_length="179"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="79381" e_stop="79482" e_length="102"/>
          </exon>
          <intron i_serial="2" don_prob="0.986" acc_prob="0.991">
            <gDNA_intron_boundary i_start="79483" i_stop="79719" i_length="237"/>
          </intron>
          <exon e_serial="3" e_score="0.984">
            <gDNA_exon_boundary e_start="79720" e_stop="81285" e_length="1566"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="78835" stop="79201"/>
              <exon start="79381" stop="79482"/>
              <exon start="79720" stop="79937"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E316258" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="79889" stop="80284"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E279855" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="79969" stop="80769"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E711073" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="80605" stop="81285"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E539159" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="80627" stop="81259"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E350921" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="80627" stop="81245"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E353676" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="10" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>AATAATCTTATTCTGCTTTAAATTCTCACTTCCACTTTTTTTAAATAATGGCTATTGTTTCTGGTCTTTCATCTCCTCTTGGTCCTCCGGCATGTGAAAAAGATGCCAAGGTCCTTCAGTTTATCGATGACATGACTAAAAATATTGATCCTGAACAAGTGAAAGTATTGGCTGAAATATTAACCCGAAATGCCAATACTGAGTACCTCCGGAGGTTCAACATTAATGGTGCTATTGACCGTGAAACTTTCAAGTCTAAGGTCCCCGTTGTTACATACGAGGATCTTAAACCTGATATTGATCGTATTGCTAATGGTGATCGTTCTCCCATTTTCTCATCACACCCTATCTCCGAATTCCTTACCAG : TTCGGGGACGTCTGCTGGAGAGAGAAAACTGATGCCCACAATTGCGGATGAGCTAGAACGCAGACAAAAACTGTACAACCTTCTACAGCCCGTGATGAATCT : GTATGTGCCTGGTTTAGATAAGGGGAAGGGATTGTACTTTCTATTTATCAAGGCAGAAACGAAGACGCCTAGTGGCCTTGTTGCACGTCCAGTCCTAACAAGTTACTACAAAAGTGAACAATTCAAGACAAGGCCATACGATCCATACAATGTGTATACAAGCCCCAACGAGACCATTCTCTGTGTCGATTCATTCCAAAGCATGTATTCCCAAATGCTTTGTGGCCTTCTCATGAGAGAAGAAGTCCTCCGAGTTGGTGCTGTTTTTGCCTCTGGCTTACTCCGTGCCATCCGTTTTCTTCAACTCAATTGGAAGCAATTGTCTCAGGATATCGCGTCTGGAACTCTAAACCCTAGAGTTTCAGACCCGTCTATCCGAAATTGCATTTCCCAAATACTCAAACCAAATCCCCAACTTGCTGAGTTTGTTGCTAAGGAATGTGAAGGCGAAAATTGGGAAGGAATCATTACTAGAATTTGGCCAAACACAAAGCACCTTGATGTGATAGTCACAGGTGCAATGGCTCAATATATACCTACTTTGGATTATTATAGTGGGGGTCTACCAAAGGTGTGTACAATGTACGCATCATCCGAATGTTATTTTGGACTCAATTTAAATCCATTGTGTAAGCCTTGTGAAGTTTGTTACACCATTATGCCAAATATGGGTTACTTTGAATTCATCCCTCATGACCCGGTCAACCCGGTTCAAATCTCTCGTGACTCACCCCCACATCTAGTAGACCTTGCTGACGTGGAAATTGGAAAAGAATACGAGCTCGTGATCACAACTTACGCCGGACTATGCCGTTACCGAGTTGGTGACATACTCCAGGTCACCGGGTTCCACAACTCGGCCCCTCAGTTCAAATTCGTCAGGCGAAAAAACGTGCTGTTGAGTATTGATTCTGATAAAACCGATGAGTCCGAATTACACACCGCGATTGAAAATGCGACCGCACTTTTGCGCCCGTATGATACTACTTTAGTTGAGTACACCAGTTTTGCCGATACTAAGACAATTCCGGGGCATTACGTTATTTACTGGGAGTTACTTGTTAAGGACCCGGCTAACCCACCCAGTGATGACGTGTTGAACCAGTGCTGCCTTGCGATGGAACAATCATTGAACTCGGTGTACAGGCAGTGTCGCGTCGCAGACAATTCAATCGGGCCACTGGAGATAAGAGTGGTGAAAAACGGGACATTTGAAGAACTTATGGATTATGCAATTTCGAGAGGTGCATCAATTAATCAGTATAAGGCACCAAGGTGTGTTAATTTTACTCCTATTGTTGAACTTTTGGACTCCAGGGTGATTTCTGTGAATTTCAGTCCAAAAGCTCCTCACTGGACTCCAGAACGACGACGTTGAACACTAGGCATGCTATTTTATCAAGTCAAGTAGTGTTGTTAGTGTGTGAAAAAAAAAATGTTTAGACAGTGGACCAAAGAAAGAAAAAAAAAGAATCAGTACTATAATTCTTCGTCTCTGTCTGATCACTTTAATTTGCTTTCTTTTTGTGAATCTGATATCTGTTGTTGGATGTTGAATATTGTTCA</gDNA_template>
            <first_frame> N  N  L  I  L  L  *  I  L  T  S  T  F  F  K  *  W  L  L  F  L  V  F  H  L  L  L  V  L  R  H  V  K  K  M  P  R  S  F  S  L  S  M  T  *  L  K  I  L  I  L  N  K  *  K  Y  W  L  K  Y  *  P  E  M  P  I  L  S  T  S  G  G  S  T  L  M  V  L  L  T  V  K  L  S  S  L  R  S  P  L  L  H  T  R  I  L  N  L  I  L  I  V  L  L  M  V  I  V  L  P  F  S  H  H  T  L  S  P  N  S  L  P   : V  R  G  R  L  L  E  R  E  N  *  C  P  Q  L  R  M  S  *  N  A  D  K  N  C  T  T  F  Y  S  P  *  *  I   : C  M  C  L  V  *  I  R  G  R  D  C  T  F  Y  L  S  R  Q  K  R  R  R  L  V  A  L  L  H  V  Q  S  *  Q  V  T  T  K  V  N  N  S  R  Q  G  H  T  I  H  T  M  C  I  Q  A  P  T  R  P  F  S  V  S  I  H  S  K  A  C  I  P  K  C  F  V  A  F  S  *  E  K  K  S  S  E  L  V  L  F  L  P  L  A  Y  S  V  P  S  V  F  F  N  S  I  G  S  N  C  L  R  I  S  R  L  E  L  *  T  L  E  F  Q  T  R  L  S  E  I  A  F  P  K  Y  S  N  Q  I  P  N  L  L  S  L  L  L  R  N  V  K  A  K  I  G  K  E  S  L  L  E  F  G  Q  T  Q  S  T  L  M  *  *  S  Q  V  Q  W  L  N  I  Y  L  L  W  I  I  I  V  G  V  Y  Q  R  C  V  Q  C  T  H  H  P  N  V  I  L  D  S  I  *  I  H  C  V  S  L  V  K  F  V  T  P  L  C  Q  I  W  V  T  L  N  S  S  L  M  T  R  S  T  R  F  K  S  L  V  T  H  P  H  I  *  *  T  L  L  T  W  K  L  E  K  N  T  S  S  *  S  Q  L  T  P  D  Y  A  V  T  E  L  V  T  Y  S  R  S  P  G  S  T  T  R  P  L  S  S  N  S  S  G  E  K  T  C  C  *  V  L  I  L  I  K  P  M  S  P  N  Y  T  P  R  L  K  M  R  P  H  F  C  A  R  M  I  L  L  *  L  S  T  P  V  L  P  I  L  R  Q  F  R  G  I  T  L  F  T  G  S  Y  L  L  R  T  R  L  T  H  P  V  M  T  C  *  T  S  A  A  L  R  W  N  N  H  *  T  R  C  T  G  S  V  A  S  Q  T  I  Q  S  G  H  W  R  *  E  W  *  K  T  G  H  L  K  N  L  W  I  M  Q  F  R  E  V  H  Q  L  I  S  I  R  H  Q  G  V  L  I  L  L  L  L  L  N  F  W  T  P  G  *  F  L  *  I  S  V  Q  K  L  L  T  G  L  Q  N  D  D  V  E  H  *  A  C  Y  F  I  K  S  S  S  V  V  S  V  *  K  K  K  C  L  D  S  G  P  K  K  E  K  K  R  I  S  T  I  I  L  R  L  C  L  I  T  L  I  C  F  L  F  V  N  L  I  S  V  V  G  C  *  I  L  F  </first_frame>
            <second_frame>  I  I  L  F  C  F  K  F  S  L  P  L  F  L  N  N  G  Y  C  F  W  S  F  I  S  S  W  S  S  G  M  *  K  R  C  Q  G  P  S  V  Y  R  *  H  D  *  K  Y  *  S  *  T  S  E  S  I  G  *  N  I  N  P  K  C  Q  Y  *  V  P  P  E  V  Q  H  *  W  C  Y  *  P  *  N  F  Q  V  *  G  P  R  C  Y  I  R  G  S  *  T  *  Y  *  S  Y  C  *  W  *  S  F  S  H  F  L  I  T  P  Y  L  R  I  P  Y  Q  :  F  G  D  V  C  W  R  E  K  T  D  A  H  N  C  G  *  A  R  T  Q  T  K  T  V  Q  P  S  T  A  R  D  E  S  :  V  C  A  W  F  R  *  G  E  G  I  V  L  S  I  Y  Q  G  R  N  E  D  A  *  W  P  C  C  T  S  S  P  N  K  L  L  Q  K  *  T  I  Q  D  K  A  I  R  S  I  Q  C  V  Y  K  P  Q  R  D  H  S  L  C  R  F  I  P  K  H  V  F  P  N  A  L  W  P  S  H  E  R  R  S  P  P  S  W  C  C  F  C  L  W  L  T  P  C  H  P  F  S  S  T  Q  L  E  A  I  V  S  G  Y  R  V  W  N  S  K  P  *  S  F  R  P  V  Y  P  K  L  H  F  P  N  T  Q  T  K  S  P  T  C  *  V  C  C  *  G  M  *  R  R  K  L  G  R  N  H  Y  *  N  L  A  K  H  K  A  P  *  C  D  S  H  R  C  N  G  S  I  Y  T  Y  F  G  L  L  *  W  G  S  T  K  G  V  Y  N  V  R  I  I  R  M  L  F  W  T  Q  F  K  S  I  V  *  A  L  *  S  L  L  H  H  Y  A  K  Y  G  L  L  *  I  H  P  S  *  P  G  Q  P  G  S  N  L  S  *  L  T  P  T  S  S  R  P  C  *  R  G  N  W  K  R  I  R  A  R  D  H  N  L  R  R  T  M  P  L  P  S  W  *  H  T  P  G  H  R  V  P  Q  L  G  P  S  V  Q  I  R  Q  A  K  K  R  A  V  E  Y  *  F  *  *  N  R  *  V  R  I  T  H  R  D  *  K  C  D  R  T  F  A  P  V  *  Y  Y  F  S  *  V  H  Q  F  C  R  Y  *  D  N  S  G  A  L  R  Y  L  L  G  V  T  C  *  G  P  G  *  P  T  Q  *  *  R  V  E  P  V  L  P  C  D  G  T  I  I  E  L  G  V  Q  A  V  S  R  R  R  Q  F  N  R  A  T  G  D  K  S  G  E  K  R  D  I  *  R  T  Y  G  L  C  N  F  E  R  C  I  N  *  S  V  *  G  T  K  V  C  *  F  Y  S  Y  C  *  T  F  G  L  Q  G  D  F  C  E  F  Q  S  K  S  S  S  L  D  S  R  T  T  T  L  N  T  R  H  A  I  L  S  S  Q  V  V  L  L  V  C  E  K  K  N  V  *  T  V  D  Q  R  K  K  K  K  E  S  V  L  *  F  F  V  S  V  *  S  L  *  F  A  F  F  L  *  I  *  Y  L  L  L  D  V  E  Y  C  S </second_frame>
            <third_frame>   *  S  Y  S  A  L  N  S  H  F  H  F  F  *  I  M  A  I  V  S  G  L  S  S  P  L  G  P  P  A  C  E  K  D  A  K  V  L  Q  F  I  D  D  M  T  K  N  I  D  P  E  Q  V  K  V  L  A  E  I  L  T  R  N  A  N  T  E  Y  L  R  R  F  N  I  N  G  A  I  D  R  E  T  F  K  S  K  V  P  V  V  T  Y  E  D  L  K  P  D  I  D  R  I  A  N  G  D  R  S  P  I  F  S  S  H  P  I  S  E  F  L  T  S :   S  G  T  S  A  G  E  R  K  L  M  P  T  I  A  D  E  L  E  R  R  Q  K  L  Y  N  L  L  Q  P  V  M  N  L :   Y  V  P  G  L  D  K  G  K  G  L  Y  F  L  F  I  K  A  E  T  K  T  P  S  G  L  V  A  R  P  V  L  T  S  Y  Y  K  S  E  Q  F  K  T  R  P  Y  D  P  Y  N  V  Y  T  S  P  N  E  T  I  L  C  V  D  S  F  Q  S  M  Y  S  Q  M  L  C  G  L  L  M  R  E  E  V  L  R  V  G  A  V  F  A  S  G  L  L  R  A  I  R  F  L  Q  L  N  W  K  Q  L  S  Q  D  I  A  S  G  T  L  N  P  R  V  S  D  P  S  I  R  N  C  I  S  Q  I  L  K  P  N  P  Q  L  A  E  F  V  A  K  E  C  E  G  E  N  W  E  G  I  I  T  R  I  W  P  N  T  K  H  L  D  V  I  V  T  G  A  M  A  Q  Y  I  P  T  L  D  Y  Y  S  G  G  L  P  K  V  C  T  M  Y  A  S  S  E  C  Y  F  G  L  N  L  N  P  L  C  K  P  C  E  V  C  Y  T  I  M  P  N  M  G  Y  F  E  F  I  P  H  D  P  V  N  P  V  Q  I  S  R  D  S  P  P  H  L  V  D  L  A  D  V  E  I  G  K  E  Y  E  L  V  I  T  T  Y  A  G  L  C  R  Y  R  V  G  D  I  L  Q  V  T  G  F  H  N  S  A  P  Q  F  K  F  V  R  R  K  N  V  L  L  S  I  D  S  D  K  T  D  E  S  E  L  H  T  A  I  E  N  A  T  A  L  L  R  P  Y  D  T  T  L  V  E  Y  T  S  F  A  D  T  K  T  I  P  G  H  Y  V  I  Y  W  E  L  L  V  K  D  P  A  N  P  P  S  D  D  V  L  N  Q  C  C  L  A  M  E  Q  S  L  N  S  V  Y  R  Q  C  R  V  A  D  N  S  I  G  P  L  E  I  R  V  V  K  N  G  T  F  E  E  L  M  D  Y  A  I  S  R  G  A  S  I  N  Q  Y  K  A  P  R  C  V  N  F  T  P  I  V  E  L  L  D  S  R  V  I  S  V  N  F  S  P  K  A  P  H  W  T  P  E  R  R  R  *  T  L  G  M  L  F  Y  Q  V  K  *  C  C  *  C  V  K  K  K  M  F  R  Q  W  T  K  E  R  K  K  K  N  Q  Y  Y  N  S  S  S  L  S  D  H  F  N  L  L  S  F  C  E  S  D  I  C  C  W  M  L  N  I  V   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02SLe0017H17.1" strand="+"/>
                <serials PGL_serial="10" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="78879" stop="79201"/>
                    <exon start="79381" stop="79482"/>
                    <exon start="79720" stop="81097"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>1800</number_coding_nucleotides>
                  <number_encoded_amino_acids>600</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>IMAIVSGLSSPLGPPACEKDAKVLQFIDDMTKNIDPEQVKVLAEILTRNANTEYLRRFNINGAIDRETFKSKVPVVTYEDLKPDIDRIANGDRSPIFSSHPISEFLTSSGTSAGERKLMPTIADELERRQKLYNLLQPVMNLYVPGLDKGKGLYFLFIKAETKTPSGLVARPVLTSYYKSEQFKTRPYDPYNVYTSPNETILCVDSFQSMYSQMLCGLLMREEVLRVGAVFASGLLRAIRFLQLNWKQLSQDIASGTLNPRVSDPSIRNCISQILKPNPQLAEFVAKECEGENWEGIITRIWPNTKHLDVIVTGAMAQYIPTLDYYSGGLPKVCTMYASSECYFGLNLNPLCKPCEVCYTIMPNMGYFEFIPHDPVNPVQISRDSPPHLVDLADVEIGKEYELVITTYAGLCRYRVGDILQVTGFHNSAPQFKFVRRKNVLLSIDSDKTDESELHTAIENATALLRPYDTTLVEYTSFADTKTIPGHYVIYWELLVKDPANPPSDDVLNQCCLAMEQSLNSVYRQCRVADNSIGPLEIRVVKNGTFEELMDYAISRGASINQYKAPRCVNFTPIVELLDSRVISVNFSPKAPHWTPERRR*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
  </PGL_module>
</GTH_output>
<!--
$ general statistics:
$ 111 chains have been computed
$ 
$ memory statistics:
$ 198368 bytes spliced alignments in total
$ 90 spliced alignments have been stored
$ 2204 bytes was the average size of a spliced alignment
$ 18744 bytes predicted gene locations in total
$ 10 predicted gene locations have been stored
$ 1874 bytes was the average size of a predicted gene location
$ 0 megabytes was the average size of the backtrace matrix
$ 118 backtrace matrices have been allocated
$ 
$ date finished: 2009-12-01 10:38:19
-->
