<?xml version="1.0" encoding="ISO-8859-1"?>
<GTH_output xmlns="http://www.genomethreader.org/GTH_output/" GTH_XML_version="1.1">
  <header xmlns="http://www.genomethreader.org/GTH_output/header/">
    <source program="GenomeThreader" version="0.9.54" build_date="2006-07-28 11:55:15" run_date="2009-12-01 10:42:11"/>
    <gDNA_template_files>
      <temp_name>/tmp/bac-submission-temp-C02SLe0018B07-nGyJi/GenomeThreader_SGN_E_tomato/un_xed_seqs</temp_name>
    </gDNA_template_files>
    <reference_files>
      <file ref_name="/tmp/bac-submission-temp-C02SLe0018B07-nGyJi/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" type="ESTcDNA"/>
    </reference_files>
    <splice_site_parameters parameter_type="Bayesian" species="arabidopsis"/>
    <parameters>
      <parameter name="bssmfile" value="arabidopsis"/>
      <parameter name="scorematrixfile" value="BLOSUM62"/>
      <parameter name="searchmode" value="forward=True,reverse=True)"/>
      <parameter name="translationtable" value="1"/>
      <parameter name="frompos" value="0"/>
      <parameter name="topos" value="0"/>
      <parameter name="width" value="0"/>
      <parameter name="verbose" value="False"/>
      <parameter name="skipalignmentout" value="False"/>
      <parameter name="showintronmaxlen" value="120"/>
      <parameter name="minorflen" value="64"/>
      <parameter name="showseqnums" value="False"/>
      <parameter name="gs2out" value="False"/>
      <parameter name="maskpolyatails" value="False"/>
      <parameter name="noautoindex" value="False"/>
      <parameter name="minmatchlen" value="20"/>
      <parameter name="seedlength" value="16"/>
      <parameter name="exdrop" value="2"/>
      <parameter name="online" value="False"/>
      <parameter name="inverse" value="False"/>
      <parameter name="exact" value="False"/>
      <parameter name="chainwf" value="0.500000"/>
      <parameter name="gcmaxgapwidth" value="1000000"/>
      <parameter name="gcmincoverage" value="50"/>
      <parameter name="introncutout" value="False"/>
      <parameter name="autointroncutout" value="0"/>
      <parameter name="icinitialdelta" value="50"/>
      <parameter name="iciterations" value="2"/>
      <parameter name="icdeltaincrease" value="50"/>
      <parameter name="icminremintronlen" value="10"/>
      <parameter name="nou12intronmodel" value="False"/>
      <parameter name="u12donorprob" value="0.990000"/>
      <parameter name="u12donorprob1mism" value="0.900000"/>
      <parameter name="probies" value="0.500000"/>
      <parameter name="probdelgen" value="0.030000"/>
      <parameter name="identityweight" value="2.000000"/>
      <parameter name="mismatchweight" value="-2.000000"/>
      <parameter name="undetcharweight" value="0.000000"/>
      <parameter name="deletionweight" value="-4.000000"/>
      <parameter name="dpminexonlen" value="5"/>
      <parameter name="dpminintronlen" value="50"/>
      <parameter name="shortexonpenal" value="100"/>
      <parameter name="shortintronpenal" value="100"/>
      <parameter name="wzerotransition" value="80"/>
      <parameter name="wdecreasedoutput" value="80"/>
      <parameter name="leadcutoffsmode" value="RELAXED"/>
      <parameter name="termcutoffsmode" value="STRICT"/>
      <parameter name="cutoffsminexonlen" value="5"/>
      <parameter name="scoreminexonlen" value="50"/>
      <parameter name="minaveragessp" value="0.500000"/>
      <parameter name="minalignmentscore" value="0.900000"/>
      <parameter name="maxalignmentscore" value="1.000000"/>
      <parameter name="mincoverage" value="0.900000"/>
      <parameter name="maxcoverage" value="100.000000"/>
      <parameter name="intermediate" value="False"/>
      <parameter name="sortags" value="False"/>
      <parameter name="sortagswf" value="1.000000"/>
      <parameter name="first" value="0"/>
      <parameter name="exondistri" value="False"/>
      <parameter name="introndistri" value="False"/>
      <parameter name="refseqcovdistri" value="False"/>
    </parameters>
    <overall_reference_type>ESTcDNA</overall_reference_type>
  </header>
  <alignment_module>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0018B07-nGyJi/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E355114" ref_strand="+" ref_description="SGN-E355114 [cTOS-18-B12]">
      <seq>ttaggttcgttggtctcatcacacaagaacaggtctagtagagtctttaggaacggtagggggacgcctttacttttctttgagaggctataagactttaggaaaatttcaccctttcattctttctttcgtgctactacttgagtccaattggtatctaggcgatacaaattggtatctgaccatcttcactctcttttgcagatggttagaactagagcaacgaccacgtcaacaccaacaccggccagacaagaaacaactgagccagccactggggctgtgg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0018B07-nGyJi/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02SLe0018B07.1" temp_strand="+" temp_description="C02SLe0018B07.1  AC215448.2 htgs_phase:3 submitted_to_sgn_as:C02SLe0018B07 sequenced_by:kribb upload_account_name:korea">
        <position start="8712" stop="9597"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="9012" g_stop="9297" g_length="286"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="286" r_length="286" r_score="0.909"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLe0018B07.1" gen_strand="+" ref_id="SGN-E355114" ref_strand="+">
        <total_alignment_score>0.909</total_alignment_score>
        <cumulative_length_of_scored_exons>286</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0018B07.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E355114" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="9012" e_stop="9297"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTAGGTTCGTTGGTCTCATCACACAAGAACGAGTCTAGTAGAGTCTTAAGGAACGGTAGGGGGACGCCTTTACTTTTCTTTGAGAGGCTATAAGACTTTAGGAAAATTCCATTCTTTCATTCTTTCTTTCGTGCTATTACTTGGGTCCAATTGGTATCTAGGTGATACAAATTGGTATCTGACCATCTTCACTCTATTTCGCAGATGGTTAGAACAAGAGCAACAACCGCGCCAACATCAACATCAGCAAGACAAGATGCGTCTGAGCCAGCCACTGAGACTGTAG</genome_strand>
        <mrna_strand>TTAGGTTCGTTGGTCTCATCACACAAGAACAGGTCTAGTAGAGTCTTTAGGAACGGTAGGGGGACGCCTTTACTTTTCTTTGAGAGGCTATAAGACTTTAGGAAAATTTCACCCTTTCATTCTTTCTTTCGTGCTACTACTTGAGTCCAATTGGTATCTAGGCGATACAAATTGGTATCTGACCATCTTCACTCTCTTTTGCAGATGGTTAGAACTAGAGCAACGACCACGTCAACACCAACACCGGCCAGACAAGAAACAACTGAGCCAGCCACTGGGGCTGTGG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0018B07-nGyJi/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E352180" ref_strand="+" ref_description="SGN-E352180 [cTOS-13-I20]">
      <seq>cccttgaagaccggaggtttcaatttcaagaacttactgaaaagttcatgctgatcatttgtcattataggcccagtagtcaaacgtggaaatgtacctatgtgcaatggaacatccatgcggggagccatagtagccgcatgttgtacttctgaaaccggaggtgttggcgcagaaaacactggaggtgcttgaccttgatcagataaaccgctaagataagccagaacctgattgatcatctctggggtaggttggggtggcatttcctcattttgcacttgttcagtttccccatcctccccttctcttattacttcctcagtcggtggaggagtcaccgccctagtaccagatgggctcggttctcgttctcttcctctagatgacgtcctcccacgacctctaccacggccccttgccgctgttctcc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0018B07-nGyJi/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02SLe0018B07.1" temp_strand="-" temp_description="C02SLe0018B07.1  AC215448.2 htgs_phase:3 submitted_to_sgn_as:C02SLe0018B07 sequenced_by:kribb upload_account_name:korea">
        <position start="10036" stop="9072"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="9736" g_stop="9304" g_length="433"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="433" r_length="433" r_score="0.901"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLe0018B07.1" gen_strand="-" ref_id="SGN-E352180" ref_strand="+">
        <total_alignment_score>0.901</total_alignment_score>
        <cumulative_length_of_scored_exons>433</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0018B07.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E352180" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="9736" e_stop="9304"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCCTCGAAGACTGGAGGTTTCAATTTCAAAAACTTACTGAAAAGTTCATGCTGATCATTTGTCATTATAGGCCCTGTAGTCAGACGAGGAAATGTGCCTATTTCCAATGAGGCATCCATGCGGTGAGCCATAGTAGCCGCATGTTGTACCTCCGGAACCTGAGGTGCTGGTGCAGAAAACACTGGAGGCGCTTGGCCTTGATCAGATAACCCGCTAAGATAAGCAAGAACCTGATTGATCATCTCTGGGGTAGGTTGGGGTGGCAATTCCTCATTCTGCACTTGTTCATTCTCCCCATCCTCCCCTTCTCTTACTACTTCCTCAGTCGGTGGAGGAGTCACCGCCCTAGTACCAGATGGGCCAGGCGTTCGTCCTTTTCCTCTAGAGGACGTCCTCCCGCGACCTCTACCGCGGCCTCTTGCCACTGCTCCTC</genome_strand>
        <mrna_strand>CCCTTGAAGACCGGAGGTTTCAATTTCAAGAACTTACTGAAAAGTTCATGCTGATCATTTGTCATTATAGGCCCAGTAGTCAAACGTGGAAATGTACCTATGTGCAATGGAACATCCATGCGGGGAGCCATAGTAGCCGCATGTTGTACTTCTGAAACCGGAGGTGTTGGCGCAGAAAACACTGGAGGTGCTTGACCTTGATCAGATAAACCGCTAAGATAAGCCAGAACCTGATTGATCATCTCTGGGGTAGGTTGGGGTGGCATTTCCTCATTTTGCACTTGTTCAGTTTCCCCATCCTCCCCTTCTCTTATTACTTCCTCAGTCGGTGGAGGAGTCACCGCCCTAGTACCAGATGGGCTCGGTTCTCGTTCTCTTCCTCTAGATGACGTCCTCCCACGACCTCTACCACGGCCCCTTGCCGCTGTTCTCC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0018B07-nGyJi/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E329287" ref_strand="+" ref_description="SGN-E329287 [cTOD-2-K13]">
      <seq>acctagcccatctggtactaaggcggtgacacctccaccaactgaggaagtggtaagagagggtgaggatggggagaatgaacaagtgcagaatgaggaattgccaccccaacctacccaagagatgatcaatcaggttcttgcttaccttagcgggttatctgatcaaggccaagcacctccagtgttttctgcactagcacctcaggctccggaggtacaacatgcgcctactgtgactccccgcatcgatacctcattggaaataggaacgtttccccgtctgactacagggcctataatgacaaatgatcagcatgaactttttagtaagttcttgaaattgaaacctcaagtctacaagggtgttgaatctgaggatgcctacgattttctggttgactgtcatgagctactacacaagatgggtatagtagaacggtttggtgttgagtttgtgacttatcagtttcaagggaacgccaaaatgtggtggcggtcacatgttgagtgtcaaccaacagaggcaccacgtatgacttgggcatcattct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0018B07-nGyJi/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02SLe0018B07.1" temp_strand="+" temp_description="C02SLe0018B07.1  AC215448.2 htgs_phase:3 submitted_to_sgn_as:C02SLe0018B07 sequenced_by:kribb upload_account_name:korea">
        <position start="9072" stop="34959"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="9371" g_stop="9930" g_length="560"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="554" r_length="554" r_score="0.925"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLe0018B07.1" gen_strand="+" ref_id="SGN-E329287" ref_strand="+">
        <total_alignment_score>0.925</total_alignment_score>
        <cumulative_length_of_scored_exons>560</cumulative_length_of_scored_exons>
        <coverage percentage="1.011" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0018B07.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E329287" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="9371" e_stop="9930"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCCTGGCCCATCTGGTACTAGGGCGGTGACTCCTCCACCGACTGAGGAAGTAGTAAGAGAAGGGGAGGATGGGGAGAATGAACAAGTGCAGAATGAGGAATTGCCACCCCAACCTACCCCAGAGATGATCAATCAGGTTCTTGCTTATCTTAGCGGGTTATCTGATCAAGGCCAAGCGCCTCCAGTGTTTTCTGCACCAGCACCTCAGGTTCCGGAGGTACAACATGCGGCTACTATGGCTCACCGCATGGATGCCTCATTGGAAATAGGCACATTTCCTCGTCTGACTACAGGGCCTATAATGACAAATGATCAGCATGAACTTTTCAGTAAGTTTTTGAAATTGAAACCTCCAGTCTTCGAGGGTGCTGAATCTAAGGATGCCTACGATTTTCTGGTTGACTGTCATAAGCTACTACACAAACACAAGATGAGTATAGTAGAACGGTTTGGTGTTAAATTTGTGACTTATCAGTTTCAAGGGAACGCCAAAATGTGGTGGCGGTCACATGTTGAGTGTCAACCAATAGAGGCACCACCTCTGACTTGGGCATCATTCT</genome_strand>
        <mrna_strand>ACCTAGCCCATCTGGTACTAAGGCGGTGACACCTCCACCAACTGAGGAAGTGGTAAGAGAGGGTGAGGATGGGGAGAATGAACAAGTGCAGAATGAGGAATTGCCACCCCAACCTACCCAAGAGATGATCAATCAGGTTCTTGCTTACCTTAGCGGGTTATCTGATCAAGGCCAAGCACCTCCAGTGTTTTCTGCACTAGCACCTCAGGCTCCGGAGGTACAACATGCGCCTACTGTGACTCCCCGCATCGATACCTCATTGGAAATAGGAACGTTTCCCCGTCTGACTACAGGGCCTATAATGACAAATGATCAGCATGAACTTTTTAGTAAGTTCTTGAAATTGAAACCTCAAGTCTACAAGGGTGTTGAATCTGAGGATGCCTACGATTTTCTGGTTGACTGTCATGAGCTACT------ACACAAGATGGGTATAGTAGAACGGTTTGGTGTTGAGTTTGTGACTTATCAGTTTCAAGGGAACGCCAAAATGTGGTGGCGGTCACATGTTGAGTGTCAACCAACAGAGGCACCACGTATGACTTGGGCATCATTCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0018B07-nGyJi/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E244046" ref_strand="+" ref_description="SGN-E244046 [cLEE-1-H7]">
      <seq>aaacacgaataggcatatcaagtaattcacaatgtaaagttagaccattagcaaatgaggaagatacataagaaaatgtggatccaggatcaaacaatacagaagccatgcaatcacaaaccaaaagattacctgtgatgacaacatcagattcctccgcttcagaccgcccagggaaagcgtaacaatgggccctatcattcttatgtctgttgcccctaccatgttgtgatgtagtggctccagtttgcccatcacctcggccgttttggtgaccaccatttcctcgaccgccacgtcctccagaataacggactctgccatgaccacctctacctctaacctttggaggtctgtaactctgttttggacaatatctcttaatatgtccaatctccccacacccatagcactctctgggttcatgcataagtctctcagagaagtgttgaccggtcgaaggtggacccccaactacagtctgtagtgaagactgaattggtcggactgagtaacttcccgaaccctgtcctctagtgtaagcaccattaaactcacc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0018B07-nGyJi/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02SLe0018B07.1" temp_strand="-" temp_description="C02SLe0018B07.1  AC215448.2 htgs_phase:3 submitted_to_sgn_as:C02SLe0018B07 sequenced_by:kribb upload_account_name:korea">
        <position start="11121" stop="9963"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="10821" g_stop="10263" g_length="559"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="559" r_length="559" r_score="0.905"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLe0018B07.1" gen_strand="-" ref_id="SGN-E244046" ref_strand="+">
        <total_alignment_score>0.905</total_alignment_score>
        <cumulative_length_of_scored_exons>559</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0018B07.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E244046" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="10821" e_stop="10263"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAACACGAATAGACATGTCAAGTATTTCACAAGGTAAATTAAGACCAGTAGCAAATGAAGAATATACATAAGAAAATGTGGATCCAGGATCAAACAATACAGAAGCCATGCAATCACAAACCAAAAGATTACCTGTGATGACAGCATCAGATGTCTCCACTTCAGATCTCCCAGGGAAAGCATAACAATGGGCCCTCTCACCTGTCTGTCCGTTGACCCTACCATGTTGTGATGTAGTGGCTCCAGTTTTCCCATCACCCCGGCCGTTTTGGTGACCACCATTACCTCGACCACCGCTTCCTCCAGAATGACGGCCTCTTCCATAACCACTTCTACCTCTAACATTTGGAGGTCTGTAACTCTGTTTTGGACAATACCTCTTAATGTGTCCAGTCTTCCCACATCCATAACACTCTCCGGATTCAAGCATAGGTCTCTCAGAGAAGTGTTGACCGGTCTGAGGTGGACCCCCAACTACAGTCTGTAGTGAAGACTGAATTGGTCGAACTGAGTAACCTCCTGAACCCTGTCCTCTAGAGTAAGAACCATTAAACTCACC</genome_strand>
        <mrna_strand>AAACACGAATAGGCATATCAAGTAATTCACAATGTAAAGTTAGACCATTAGCAAATGAGGAAGATACATAAGAAAATGTGGATCCAGGATCAAACAATACAGAAGCCATGCAATCACAAACCAAAAGATTACCTGTGATGACAACATCAGATTCCTCCGCTTCAGACCGCCCAGGGAAAGCGTAACAATGGGCCCTATCATTCTTATGTCTGTTGCCCCTACCATGTTGTGATGTAGTGGCTCCAGTTTGCCCATCACCTCGGCCGTTTTGGTGACCACCATTTCCTCGACCGCCACGTCCTCCAGAATAACGGACTCTGCCATGACCACCTCTACCTCTAACCTTTGGAGGTCTGTAACTCTGTTTTGGACAATATCTCTTAATATGTCCAATCTCCCCACACCCATAGCACTCTCTGGGTTCATGCATAAGTCTCTCAGAGAAGTGTTGACCGGTCGAAGGTGGACCCCCAACTACAGTCTGTAGTGAAGACTGAATTGGTCGGACTGAGTAACTTCCCGAACCCTGTCCTCTAGTGTAAGCACCATTAAACTCACC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0018B07-nGyJi/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E355244" ref_strand="+" ref_description="SGN-E355244 [cTOS-18-K20]">
      <seq>cggaaactcccatccttcttcttcacaaacaaaatcggagcaccccaaggagatgcacttggtctaatgaaacctttgctcaacaactcttgaagttgggcctttaactctcttaactctacgggagccattctataagggggtatagaaatggggcgtgtgcccggttcaagatcgatacagaagtcaatatccctatctggtggcataccaggaagatctgcagggaacacatccaaaaactcacagactataaaaaccgactcaatcgaaggtacttgggtagtgtcatccttgagatgtgccaagaaagctaaacaccctttactaaccattttcttagcacgaagaaaggagatgatgcacaccggattggaagtgtagtcaccctcccacactaacggatctgtcccaggcttggctaatgtcaccgttttagcattacaatccaagatcgcaaattgcggagaaagccaagtcatacccagaattacatcaaaatcaaccatttctaagataaccaaatctacataagtgttgctccccacaaagttcaccaaacaagacctatataccttttcaactaccacagactcacccaccggagtagaaacacgaataggcatatcaagtaattcacaatgtaaatttagaccgttagcaaatgaggaagatacantagaaaacgtggatcccaggatcaacaatacagaagccatgcaatcacaatcgaaagattacctgtgatgacagcatctaat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0018B07-nGyJi/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02SLe0018B07.1" temp_strand="-" temp_description="C02SLe0018B07.1  AC215448.2 htgs_phase:3 submitted_to_sgn_as:C02SLe0018B07 sequenced_by:kribb upload_account_name:korea">
        <position start="11730" stop="10370"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="11430" g_stop="10670" g_length="761"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="761" r_length="761" r_score="0.904"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLe0018B07.1" gen_strand="-" ref_id="SGN-E355244" ref_strand="+">
        <total_alignment_score>0.904</total_alignment_score>
        <cumulative_length_of_scored_exons>761</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0018B07.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E355244" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="11430" e_stop="10670"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CGGAAACTCCCATCCTTTTTCTTCACAAATAACATAGGAGCACCCCAAGGAGATGCACTTGGTCTAATAAAGCCTTTGCTTAGCAACTCTTGAAGTTGTGCCTTTAACTCTCTTAACTCCGCGGGAGCCATTCTATAAGGGGGTATAGAAATGGAGCGAGTATCCGGTTCAAGATCGATGCAGAAGTCAATATCTCTATCCGGTGGCATACCAGGAAGGTCTGCAGGAAACACATCTAAAAATTTGCGGACTATCGAAACCGACTCAATTGAAGGTACTTGAGTAGTGTCATCCCTGAGATGTGCTAAGAAAGTTAGACAACCCTTACTAACCATTTTCTTAGCACGAAGAAAGGAGACGATACGAATCGGATTGGAAGTGTAGTCGCCCTCCCACACTAACGGATCTGTCCCAGGCTTGGCTAACGTCACAGTTTTAGTATTACAGTCCAAGATCGCAAAATTCGGAGAAAGCCAAATCATACCCAGAATTACATCAAAGTCAACCATTTCTAAGATAACCAAATCTACATAAGTGTTGCTCCCCACAAAG-TCACCAAACAAGACCTATATACTTTTTCAACTATCACAGACTCACCCACCGGAGTAGAAACACGAATAGACATGTCAAGTATTTCACAAGGTAAATTAAGACCAGTAGCAAATGAAGAATATACATAAGAAAATGTGGAT-CCAGGATCAAACAATACAGAAGCCATGCAATCACAAACCAAAAGATTACCTGTGATGACAGCATCAGAT</genome_strand>
        <mrna_strand>CGGAAACTCCCATCCTTCTTCTTCACAAACAAAATCGGAGCACCCCAAGGAGATGCACTTGGTCTAATGAAACCTTTGCTCAACAACTCTTGAAGTTGGGCCTTTAACTCTCTTAACTCTACGGGAGCCATTCTATAAGGGGGTATAGAAATGGGGCGTGTGCCCGGTTCAAGATCGATACAGAAGTCAATATCCCTATCTGGTGGCATACCAGGAAGATCTGCAGGGAACACATCCAAAAACTCACAGACTATAAAAACCGACTCAATCGAAGGTACTTGGGTAGTGTCATCCTTGAGATGTGCCAAGAAAGCTAAACACCCTTTACTAACCATTTTCTTAGCACGAAGAAAGGAGATGATGCACACCGGATTGGAAGTGTAGTCACCCTCCCACACTAACGGATCTGTCCCAGGCTTGGCTAATGTCACCGTTTTAGCATTACAATCCAAGATCGCAAATTGCGGAGAAAGCCAAGTCATACCCAGAATTACATCAAAATCAACCATTTCTAAGATAACCAAATCTACATAAGTGTTGCTCCCCACAAAGTTCACCAAACAAGACCTATATACCTTTTCAACTACCACAGACTCACCCACCGGAGTAGAAACACGAATAGGCATATCAAGTAATTCACAATGTAAATTTAGACCGTTAGCAAATGAGGAAGATACANTAGAAAACGTGGATCCCAGGATC-AACAATACAGAAGCCATGCAATCAC-AATCGAAAGATTACCTGTGATGACAGCATCTAAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0018B07-nGyJi/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E352716" ref_strand="+" ref_description="SGN-E352716 [cTOS-11-H19]">
      <seq>gatctgtcccaggcttggctaacgtcacagttttagcattacaatccaagattgcaaaatttggagaaagccaagtcatacccagaattacatcaaaatcaaccatttctaagataaccaagtctacataagtattgctccccacaaaagtcaccagaccagacctatatactttttcaactatcacagactcacccaccggagtagaaacacgaataggcatgtcaagcaattcataatttaatttaagaccagtagcaaatgaggaagatacatatgaaaatgtggatccagggtcaaataatacaaaagccatgcaatcacaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0018B07-nGyJi/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02SLe0018B07.1" temp_strand="-" temp_description="C02SLe0018B07.1  AC215448.2 htgs_phase:3 submitted_to_sgn_as:C02SLe0018B07 sequenced_by:kribb upload_account_name:korea">
        <position start="11327" stop="10398"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="11027" g_stop="10698" g_length="330"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="331" r_length="331" r_score="0.918"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLe0018B07.1" gen_strand="-" ref_id="SGN-E352716" ref_strand="+">
        <total_alignment_score>0.918</total_alignment_score>
        <cumulative_length_of_scored_exons>330</cumulative_length_of_scored_exons>
        <coverage percentage="0.997" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0018B07.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E352716" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="11027" e_stop="10698"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GATCTGTCCCAGGCTTGGCTAACGTCACAGTTTTAGTATTACAGTCCAAGATCGCAAAATTCGGAGAAAGCCAAATCATACCCAGAATTACATCAAAGTCAACCATTTCTAAGATAACCAAATCTACATAAGTGTTGCTCCCCAC-AAAGTCACCAAACAAGACCTATATACTTTTTCAACTATCACAGACTCACCCACCGGAGTAGAAACACGAATAGACATGTCAAGTATTTCACAAGGTAAATTAAGACCAGTAGCAAATGAAGAATATACATAAGAAAATGTGGATCCAGGATCAAACAATACAGAAGCCATGCAATCACAAACCAA</genome_strand>
        <mrna_strand>GATCTGTCCCAGGCTTGGCTAACGTCACAGTTTTAGCATTACAATCCAAGATTGCAAAATTTGGAGAAAGCCAAGTCATACCCAGAATTACATCAAAATCAACCATTTCTAAGATAACCAAGTCTACATAAGTATTGCTCCCCACAAAAGTCACCAGACCAGACCTATATACTTTTTCAACTATCACAGACTCACCCACCGGAGTAGAAACACGAATAGGCATGTCAAGCAATTCATAATTTAATTTAAGACCAGTAGCAAATGAGGAAGATACATATGAAAATGTGGATCCAGGGTCAAATAATACAAAAGCCATGCAATCACAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0018B07-nGyJi/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E351414" ref_strand="+" ref_description="SGN-E351414 [cTOS-12-D7]">
      <seq>cggaaactcccatccttcttcttcacaaacaaaatcggagcaccccaaggagatgcacttggtctaatgaaacctttgctcaacaactcttgaagttgggcctttaactctcttaactctacgggagccattctataagggggtatagaaatggggcgtgtgcccggttcaagatcgatacagaagtcaatatccctatctggtggcataccaggaagatctgcagggaacacatccaaaaactcacagactataaaaaccgactcaatcgaaggtacttgggtagtgtcatccttgagatgtgccaagaaagctaaacaccctttactaaccattttcttagcacgaagaaaggagatgatgcacaccggattggaagtgtagtcaccctcccacactaacggatctgtcccaggcttggctaatgtcaccgttttagcattacaatccaagatcgcaaattgcggagaaagccaagtcatacccagaattacatcaaaatcaaccatttctaagataaccaaatctacataagtgttgctccccacaaagttcaccaaacaagacctatataccttttcaactaccacagactcacccaccggagtagaaacacgaataggcatatcaagtaattcacaatgtaaatttagaccgttag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0018B07-nGyJi/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02SLe0018B07.1" temp_strand="-" temp_description="C02SLe0018B07.1  AC215448.2 htgs_phase:3 submitted_to_sgn_as:C02SLe0018B07 sequenced_by:kribb upload_account_name:korea">
        <position start="11730" stop="10471"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="11430" g_stop="10771" g_length="660"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="661" r_length="661" r_score="0.909"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLe0018B07.1" gen_strand="-" ref_id="SGN-E351414" ref_strand="+">
        <total_alignment_score>0.909</total_alignment_score>
        <cumulative_length_of_scored_exons>660</cumulative_length_of_scored_exons>
        <coverage percentage="0.998" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0018B07.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E351414" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="11430" e_stop="10771"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CGGAAACTCCCATCCTTTTTCTTCACAAATAACATAGGAGCACCCCAAGGAGATGCACTTGGTCTAATAAAGCCTTTGCTTAGCAACTCTTGAAGTTGTGCCTTTAACTCTCTTAACTCCGCGGGAGCCATTCTATAAGGGGGTATAGAAATGGAGCGAGTATCCGGTTCAAGATCGATGCAGAAGTCAATATCTCTATCCGGTGGCATACCAGGAAGGTCTGCAGGAAACACATCTAAAAATTTGCGGACTATCGAAACCGACTCAATTGAAGGTACTTGAGTAGTGTCATCCCTGAGATGTGCTAAGAAAGTTAGACAACCCTTACTAACCATTTTCTTAGCACGAAGAAAGGAGACGATACGAATCGGATTGGAAGTGTAGTCGCCCTCCCACACTAACGGATCTGTCCCAGGCTTGGCTAACGTCACAGTTTTAGTATTACAGTCCAAGATCGCAAAATTCGGAGAAAGCCAAATCATACCCAGAATTACATCAAAGTCAACCATTTCTAAGATAACCAAATCTACATAAGTGTTGCTCCCCACAAAG-TCACCAAACAAGACCTATATACTTTTTCAACTATCACAGACTCACCCACCGGAGTAGAAACACGAATAGACATGTCAAGTATTTCACAAGGTAAATTAAGACCAGTAG</genome_strand>
        <mrna_strand>CGGAAACTCCCATCCTTCTTCTTCACAAACAAAATCGGAGCACCCCAAGGAGATGCACTTGGTCTAATGAAACCTTTGCTCAACAACTCTTGAAGTTGGGCCTTTAACTCTCTTAACTCTACGGGAGCCATTCTATAAGGGGGTATAGAAATGGGGCGTGTGCCCGGTTCAAGATCGATACAGAAGTCAATATCCCTATCTGGTGGCATACCAGGAAGATCTGCAGGGAACACATCCAAAAACTCACAGACTATAAAAACCGACTCAATCGAAGGTACTTGGGTAGTGTCATCCTTGAGATGTGCCAAGAAAGCTAAACACCCTTTACTAACCATTTTCTTAGCACGAAGAAAGGAGATGATGCACACCGGATTGGAAGTGTAGTCACCCTCCCACACTAACGGATCTGTCCCAGGCTTGGCTAATGTCACCGTTTTAGCATTACAATCCAAGATCGCAAATTGCGGAGAAAGCCAAGTCATACCCAGAATTACATCAAAATCAACCATTTCTAAGATAACCAAATCTACATAAGTGTTGCTCCCCACAAAGTTCACCAAACAAGACCTATATACCTTTTCAACTACCACAGACTCACCCACCGGAGTAGAAACACGAATAGGCATATCAAGTAATTCACAATGTAAATTTAGACCGTTAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0018B07-nGyJi/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E368762" ref_strand="+" ref_description="SGN-E368762 [TUS-22-P2]">
      <seq>gtctcacccaattcttcactgtctcaatcttacaaggatccaccatcactccatccttagaaaccacgtgccccaagaaggacactgcatctatccaaaactcacacttagagaacttggcataaagctttttctccctcaacatttctaatacaattctcaaatgctcctcatgttccttcttactattagagtatatcagtatatcatcaataaacatgatgacaaagagatccaaatatggcttaaaatcccgttcatcaagctcatgaacgcagcaggggcattcgtaagaccaaaagacatcactacaaattcgtaatgcccatacctggttctaaaagcagtctttggcacatccgttgcccgtattttcaattgatgataaccggatctcaagtcaatcttagagaagacacaagcaccttgtaactgatcgaacaagtcatcaatgcgaggaagtggatacttgttcttaatagttaccttgttcaactgccggtagtctatgcacatccgaaaactcccatccttcttcttcacaaaccaaaccggagcaccccaaggagatgcacttggtctaatgaagactttgctcaaaaactcttgaagttgggcctttaactctcttaactccgcgggagccattctataagggggtatagaaatggggcgagtg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0018B07-nGyJi/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02SLe0018B07.1" temp_strand="-" temp_description="C02SLe0018B07.1  AC215448.2 htgs_phase:3 submitted_to_sgn_as:C02SLe0018B07 sequenced_by:kribb upload_account_name:korea">
        <position start="36966" stop="10970"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="11937" g_stop="11269" g_length="669"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="679" r_length="679" r_score="0.903"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLe0018B07.1" gen_strand="-" ref_id="SGN-E368762" ref_strand="+">
        <total_alignment_score>0.903</total_alignment_score>
        <cumulative_length_of_scored_exons>669</cumulative_length_of_scored_exons>
        <coverage percentage="0.985" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0018B07.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E368762" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="11937" e_stop="11269"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTCTTACCCAATTCTTCACTGTCTCAATCTTAGAAGGATCCACCATCACTCCATCCTTCGACACCACGTGCCCCAAGAAGGACACTGAATCTAGCCAAAACTCACACTTGGAGAATTTGGCATAAAGCTTTTTCTCCCTCAACATTTCCAATACCATTCTCAAATGCTCCTCATGTTCTTTCTTGCTCTTTGAGTATATCAGTATATCATCAATAAATACGATCACAAAGAGATCCAAATATGGCTTAAAAATCCCGTTCATCAAGTTCATGAAAGCAGCAGGGGCATTCGTAAGACCAAAAGACATCACTACAAATTTGTAATGCCCGTACCTGGTCCGAAAAGCAGTCTTTGGCACATCCGTTGCCCGTATATTCAATTGATGATAACCGGATCTCAAGTCAATCTTAGAGAAGACACAAGCACCTTGTAACTGATCGAACAAGTCATCAATGCGAGGAATGAGATACTTGTTCTTAATAGTT--C-TG-T---CT----GTAGTCTATGCACATCCGGAAACTCCCATCCTTTTTCTTCACAAATAACATAGGAGCACCCCAAGGAGATGCACTTGGTCTAATAAAGCCTTTGCTTAGCAACTCTTGAAGTTGTGCCTTTAACTCTCTTAACTCCGCGGGAGCCATTCTATAAGGGGGTATAGAAATGGAGCGAGTA</genome_strand>
        <mrna_strand>GTCTCACCCAATTCTTCACTGTCTCAATCTTACAAGGATCCACCATCACTCCATCCTTAGAAACCACGTGCCCCAAGAAGGACACTGCATCTATCCAAAACTCACACTTAGAGAACTTGGCATAAAGCTTTTTCTCCCTCAACATTTCTAATACAATTCTCAAATGCTCCTCATGTTCCTTCTTACTATTAGAGTATATCAGTATATCATCAATAAACATGATGACAAAGAGATCCAAATATGGCTT-AAAATCCCGTTCATCAAGCTCATGAACGCAGCAGGGGCATTCGTAAGACCAAAAGACATCACTACAAATTCGTAATGCCCATACCTGGTTCTAAAAGCAGTCTTTGGCACATCCGTTGCCCGTATTTTCAATTGATGATAACCGGATCTCAAGTCAATCTTAGAGAAGACACAAGCACCTTGTAACTGATCGAACAAGTCATCAATGCGAGGAAGTGGATACTTGTTCTTAATAGTTACCTTGTTCAACTGCCGGTAGTCTATGCACATCCGAAAACTCCCATCCTTCTTCTTCACAAACCAAACCGGAGCACCCCAAGGAGATGCACTTGGTCTAATGAAGACTTTGCTCAAAAACTCTTGAAGTTGGGCCTTTAACTCTCTTAACTCCGCGGGAGCCATTCTATAAGGGGGTATAGAAATGGGGCGAGTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0018B07-nGyJi/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E204434" ref_strand="+" ref_description="SGN-E204434 [cLEC-13-J16]">
      <seq>gaatcccttgacaaatcggcggtagtagctagctaacccaacaaagctccttatttctgacacattagtaggtcttacccaattcttcactgtctcaatcttagaaggatccaccatcactccatccttagaaaccacgttccccaagaaggacactacatctagccaaaactcacacttagagaacttggcataaaactttttctccctcaacatttccaataccattctcaaatgctcttcatgttcctccttacttttagagtatatcagtatatcatcaataaatacgatcacaaagagatccaaatatggcttaaaaatcccttttattaaactcataaacgcagcaggggcattcataagaccaaaagacatcactacaaatttgtaatgcccatacctggttctaaaagcagtctttggcacatccgttgcccgtattttcaattgatgataaccggatctcaagtcaatcttagaaaagacacaagcaccttgtaactgatcgaacaagtcattaatg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0018B07-nGyJi/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02SLe0018B07.1" temp_strand="-" temp_description="C02SLe0018B07.1  AC215448.2 htgs_phase:3 submitted_to_sgn_as:C02SLe0018B07 sequenced_by:kribb upload_account_name:korea">
        <position start="12308" stop="11183"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="12008" g_stop="11484" g_length="525"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="525" r_length="525" r_score="0.939"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLe0018B07.1" gen_strand="-" ref_id="SGN-E204434" ref_strand="+">
        <total_alignment_score>0.939</total_alignment_score>
        <cumulative_length_of_scored_exons>525</cumulative_length_of_scored_exons>
        <coverage percentage="0.998" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0018B07.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E204434" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="12008" e_stop="11484"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAATCCCTTGACAAATCGACGGTAATAGCTAGCTAAACCAACAAAACTCCTTATTTCTGACACATTAGTAGGTCTTACCCAATTCTTCACTGTCTCAATCTTAGAAGGATCCACCATCACTCCATCCTTCGACACCACGTGCCCCAAGAAGGACACTGAATCTAGCCAAAACTCACACTTGGAGAATTTGGCATAAAGCTTTTTCTCCCTCAACATTTCCAATACCATTCTCAAATGCTCCTCATGTTCTTTCTTGCTCTTTGAGTATATCAGTATATCATCAATAAATACGATCACAAAGAGATCCAAATATGGCTTAAAAATCCCGTTCATCAAGTTCATGAAAGCAGCAGGGGCATTCGTAAGACCAAAAGACATCACTACAAATTTGTAATGCCCGTACCTGGTCCGAAAAGCAGTCTTTGGCACATCCGTTGCCCGTATATTCAATTGATGATAACCGGATCTCAAGTCAATCTTAGAGAAGACACAAGCACCTTGTAACTGATCGAACAAGTCATCAAT</genome_strand>
        <mrna_strand>GAATCCCTTGACAAATCGGCGGTAGTAGCTAGCTAACCCAACAAAGCTCCTTATTTCTGACACATTAGTAGGTCTTACCCAATTCTTCACTGTCTCAATCTTAGAAGGATCCACCATCACTCCATCCTTAGAAACCACGTTCCCCAAGAAGGACACTACATCTAGCCAAAACTCACACTTAGAGAACTTGGCATAAAACTTTTTCTCCCTCAACATTTCCAATACCATTCTCAAATGCTCTTCATGTTCCTCCTTACTTTTAGAGTATATCAGTATATCATCAATAAATACGATCACAAAGAGATCCAAATATGGCTTAAAAATCCCTTTTATTAAACTCATAAACGCAGCAGGGGCATTCATAAGACCAAAAGACATCACTACAAATTTGTAATGCCCATACCTGGTTCTAAAAGCAGTCTTTGGCACATCCGTTGCCCGTATTTTCAATTGATGATAACCGGATCTCAAGTCAATCTTAGAAAAGACACAAGCACCTTGTAACTGATCGAACAAGTCATTAAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0018B07-nGyJi/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E240817" ref_strand="+" ref_description="SGN-E240817 [cLED-24-J5]">
      <seq>gtctcacccatttcttcactgtctcaatcttaccaggatccaccatcactccatccttagaaaccacgtgccccaagaaggacactgcatctatccaaaactcacacttagagaacttggcataaagctttttctccctcaacatttctaatacaattctcaaatgctcctcatgttccttcttactattagaggatatcagtatatcatcaatgaacatgatgacgcagagatccaaatatggcttaaaatcccgttcatcaagctcatgaacgcagcaggggcattcgtaagaccaaaagacatcactacaaattcgtaatgcccatacctggttctaaaagcagtctttggcaca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0018B07-nGyJi/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02SLe0018B07.1" temp_strand="-" temp_description="C02SLe0018B07.1  AC215448.2 htgs_phase:3 submitted_to_sgn_as:C02SLe0018B07 sequenced_by:kribb upload_account_name:korea">
        <position start="12237" stop="11279"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="11937" g_stop="11579" g_length="359"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="358" r_length="358" r_score="0.916"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLe0018B07.1" gen_strand="-" ref_id="SGN-E240817" ref_strand="+">
        <total_alignment_score>0.916</total_alignment_score>
        <cumulative_length_of_scored_exons>359</cumulative_length_of_scored_exons>
        <coverage percentage="1.003" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0018B07.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E240817" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="11937" e_stop="11579"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTCTTACCCAATTCTTCACTGTCTCAATCTTAGAAGGATCCACCATCACTCCATCCTTCGACACCACGTGCCCCAAGAAGGACACTGAATCTAGCCAAAACTCACACTTGGAGAATTTGGCATAAAGCTTTTTCTCCCTCAACATTTCCAATACCATTCTCAAATGCTCCTCATGTTCTTTCTTGCTCTTTGAGTATATCAGTATATCATCAATAAATACGATCACAAAGAGATCCAAATATGGCTTAAAAATCCCGTTCATCAAGTTCATGAAAGCAGCAGGGGCATTCGTAAGACCAAAAGACATCACTACAAATTTGTAATGCCCGTACCTGGTCCGAAAAGCAGTCTTTGGCACA</genome_strand>
        <mrna_strand>GTCTCACCCATTTCTTCACTGTCTCAATCTTACCAGGATCCACCATCACTCCATCCTTAGAAACCACGTGCCCCAAGAAGGACACTGCATCTATCCAAAACTCACACTTAGAGAACTTGGCATAAAGCTTTTTCTCCCTCAACATTTCTAATACAATTCTCAAATGCTCCTCATGTTCCTTCTTACTATTAGAGGATATCAGTATATCATCAATGAACATGATGACGCAGAGATCCAAATATGGCTT-AAAATCCCGTTCATCAAGCTCATGAACGCAGCAGGGGCATTCGTAAGACCAAAAGACATCACTACAAATTCGTAATGCCCATACCTGGTTCTAAAAGCAGTCTTTGGCACA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0018B07-nGyJi/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E577888" ref_strand="+" ref_description="SGN-E577888 [LE08BA01]">
      <seq>ctacatctcctaccatacaatgcttcaaatggagccatatcaatgcttgattgatagctattattgtatgaaaactccgctaagggtaggaagctatcccaatgaccaccaaactctatcacacacgcacgaagcatattctccaacacttgaatcgttcgctcagactgaccatcgggagaactagt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0018B07-nGyJi/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02SLe0018B07.1" temp_strand="-" temp_description="C02SLe0018B07.1  AC215448.2 htgs_phase:3 submitted_to_sgn_as:C02SLe0018B07 sequenced_by:kribb upload_account_name:korea">
        <position start="13790" stop="13013"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="13490" g_stop="13314" g_length="177"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="177" r_length="177" r_score="0.932"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLe0018B07.1" gen_strand="-" ref_id="SGN-E577888" ref_strand="+">
        <total_alignment_score>0.932</total_alignment_score>
        <cumulative_length_of_scored_exons>177</cumulative_length_of_scored_exons>
        <coverage percentage="0.941" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0018B07.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E577888" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="13490" e_stop="13314"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTAAATCTCCTCCCATACAATGCTTCGAATGGAGCCATATCAATACTTGAGTGATAGCTATTATTGTATGAAAACTCCGCTAAGGGTAAGAAGCTATCCCAATGGCCACCAAACTCTATCACGCATGCATGAAGCATATCCTCCAACACTTGAATCGTTCTCTCAGACTGACCATCG</genome_strand>
        <mrna_strand>CTACATCTCCTACCATACAATGCTTCAAATGGAGCCATATCAATGCTTGATTGATAGCTATTATTGTATGAAAACTCCGCTAAGGGTAGGAAGCTATCCCAATGACCACCAAACTCTATCACACACGCACGAAGCATATTCTCCAACACTTGAATCGTTCGCTCAGACTGACCATCG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0018B07-nGyJi/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E242359" ref_strand="+" ref_description="SGN-E242359 [cLEE-3-K21]">
      <seq>cctaatctactttgttaataatgatgccttggtataaaagaaggcttgatgaacgaaagtggtgagattaggggatcgggtgccacgttccggtaccaggatagaatatggatcgggtgtcacgttccgacaccaggatagaatatggatcgggtgccacgttccggtaccaggatagaatatggatcgggtgtcacgttccgacaccaggatagaatatggatcgggtgtcacgttctgacaccaggatagaatatggatcgggtgccacgttccggtgccaggatagtatattgaggagtggagtgtcacgtaaggacacgaggggaataaatatgatgaatcttgaaatatgttaatatatgcaatccaatgaactaaattcccaaataagtatgatgaggaggtgtgagtcctcattgatgtgcttggtgatgcaaccaagggttatggtaattgcaaatgctgcatgctaaggatattagttaattttatgatattgcttaatacatact</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0018B07-nGyJi/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02SLe0018B07.1" temp_strand="+" temp_description="C02SLe0018B07.1  AC215448.2 htgs_phase:3 submitted_to_sgn_as:C02SLe0018B07 sequenced_by:kribb upload_account_name:korea">
        <position start="14650" stop="15841"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="14950" g_stop="15023" g_length="74"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="74" r_length="74" r_score="0.946"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="15024" i_stop="15098" i_length="75">
            <donor d_prob="0.000" d_score="0.94"/>
            <acceptor a_prob="0.000" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="15099" g_stop="15541" g_length="443"/>
          <reference_exon_boundary r_type="cDNA" r_start="75" r_stop="515" r_length="441" r_score="0.894"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLe0018B07.1" gen_strand="+" ref_id="SGN-E242359" ref_strand="+">
        <total_alignment_score>0.901</total_alignment_score>
        <cumulative_length_of_scored_exons>517</cumulative_length_of_scored_exons>
        <coverage percentage="1.004" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0018B07.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E242359" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="14950" e_stop="15023"/>
          <exon e_start="15099" e_stop="15541"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCTAATCTACTTTGTTAATGATGATGCCTTAGTGTAAAAGAAGGCTTGATGAACGAAAGTAGTGAGATTAGGGGATCGAGTGTCACGTTCCGACACCAGGATAGAATGAGGATCGGAGTGTCACGTTTCGACACCAGGATAGTATATGGATCGGGTGCCACGTTCCGGTACCAGGATAGAATGAGGATCGGAGTGTCACGTTCCGACACCAGGATAGTATATGGATCGGGTGCCACGTTCCGGTACCAGGATAGAATAAGGATCGGAGTGTCACGTTCCGACACCAGGATAGTATATGGATCGGGTGCCACGTTTCGGTACCAAGATAGAATGAGGATCGGAGTGTCACGTTCCGACACCAGGATAGTATA-TGAGGGGCGGAGTGTCACGTACCGACACGAGAGGAATAAAGATAATGAATCTTGAAAGATGTTAATATACTCAATCTAATGAACCTAATTCCCAAACGAGTATGATGAGGAGGCGTGAGTCCTCATTGATGTGCTTGGTGTTGTAACCAAGGGTTATGGTAATTGTAAATGCTGCATGCTAAGGATATTAGTTGATTTTATGATGTTACCTGATATATACT</genome_strand>
        <mrna_strand>CCTAATCTACTTTGTTAATAATGATGCCTTGGTATAAAAGAAGGCTTGATGAACGAAAGTGGTGAGATTAGGGG...........................................................................ATCGGGTGCCACGTTCCGGTACCAGGATAGAATATGGATCGG-GTGTCACGTTCCGACACCAGGATAGAATATGGATCGGGTGCCACGTTCCGGTACCAGGATAGAATATGGATCGG-GTGTCACGTTCCGACACCAGGATAGAATATGGATCGGGTGTCACGTTCTGACACCAGGATAGAATATGGATCGG-GTGCCACGTTCCGGTGCCAGGATAGTATATTGAGGAGTGGAGTGTCACGTAAGGACACGAGGGGAATAAATATGATGAATCTTGAAATATGTTAATATATGCAATCCAATGAACTAAATTCCCAAATAAGTATGATGAGGAGGTGTGAGTCCTCATTGATGTGCTTGGTGATGCAACCAAGGGTTATGGTAATTGCAAATGCTGCATGCTAAGGATATTAGTTAATTTTATGATATTGCTTAATACATACT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0018B07-nGyJi/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E355244" ref_strand="+" ref_description="SGN-E355244 [cTOS-18-K20]">
      <seq>cggaaactcccatccttcttcttcacaaacaaaatcggagcaccccaaggagatgcacttggtctaatgaaacctttgctcaacaactcttgaagttgggcctttaactctcttaactctacgggagccattctataagggggtatagaaatggggcgtgtgcccggttcaagatcgatacagaagtcaatatccctatctggtggcataccaggaagatctgcagggaacacatccaaaaactcacagactataaaaaccgactcaatcgaaggtacttgggtagtgtcatccttgagatgtgccaagaaagctaaacaccctttactaaccattttcttagcacgaagaaaggagatgatgcacaccggattggaagtgtagtcaccctcccacactaacggatctgtcccaggcttggctaatgtcaccgttttagcattacaatccaagatcgcaaattgcggagaaagccaagtcatacccagaattacatcaaaatcaaccatttctaagataaccaaatctacataagtgttgctccccacaaagttcaccaaacaagacctatataccttttcaactaccacagactcacccaccggagtagaaacacgaataggcatatcaagtaattcacaatgtaaatttagaccgttagcaaatgaggaagatacantagaaaacgtggatcccaggatcaacaatacagaagccatgcaatcacaatcgaaagattacctgtgatgacagcatctaat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0018B07-nGyJi/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02SLe0018B07.1" temp_strand="-" temp_description="C02SLe0018B07.1  AC215448.2 htgs_phase:3 submitted_to_sgn_as:C02SLe0018B07 sequenced_by:kribb upload_account_name:korea">
        <position start="36459" stop="35100"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="36159" g_stop="35399" g_length="761"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="761" r_length="761" r_score="0.904"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLe0018B07.1" gen_strand="-" ref_id="SGN-E355244" ref_strand="+">
        <total_alignment_score>0.904</total_alignment_score>
        <cumulative_length_of_scored_exons>761</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0018B07.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E355244" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="36159" e_stop="35399"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CGGAAACTCCCATCCTTTTTCTTCACAAATAACATAGGAGCACCCCAAGGAGATGCACTTGGTCTAATAAAGCCTTTGCTTAGCAACTCTTGAAGTTGTGCCTTTAACTCTCTTAACTCCGCGGGAGCCATTCTATAAGGGGGTATAGAAATGGAGCGAGTATCCGGTTCAAGATCGATGCAGAAGTCAATATCTCTATCCGGTGGCATACCAGGAAGGTCTGCAGGAAACACATCTAAAAATTTGCGGACTATCGAAACCGACTCAATTGAAGGTACTTGAGTAGTGTCATCCCTGAGATGTGCTAAGAAAGTTAGACAACCCTTACTAACCATTTTCTTAGCACGAAGAAAGGAGACGATACGAATCGGATTAGAAGTGTAGTCGCCCTCCCACACTAACGGATCTGTCCCAGGCTTGGCTAACGTCACAGTTTTAGTATTACAGTCCAAGATCGCAAAATTCGGAGAAAGCCAAATCATACCCAGAATTACATCAAAGTCAACCATTTCTAAGATAACCAAATCTACATAAGTGTTGCTCCCCACAAAG-TCACCAAACAAGACCTATATACTTTTTCAACTATCACAGACTCACCCACCGGAGTAGAAACATGAATAGGCATGTCAAGTATTTCACAAGGTAAATTAAGACCAGTAGCAAATGAAGAATATACATAAGAAAATGTGGAT-CCAGGATCAAACAATACAGAAGCCATGCAATCACAAACCGAAAGATTACCTGTGATGACAGCATCATAT</genome_strand>
        <mrna_strand>CGGAAACTCCCATCCTTCTTCTTCACAAACAAAATCGGAGCACCCCAAGGAGATGCACTTGGTCTAATGAAACCTTTGCTCAACAACTCTTGAAGTTGGGCCTTTAACTCTCTTAACTCTACGGGAGCCATTCTATAAGGGGGTATAGAAATGGGGCGTGTGCCCGGTTCAAGATCGATACAGAAGTCAATATCCCTATCTGGTGGCATACCAGGAAGATCTGCAGGGAACACATCCAAAAACTCACAGACTATAAAAACCGACTCAATCGAAGGTACTTGGGTAGTGTCATCCTTGAGATGTGCCAAGAAAGCTAAACACCCTTTACTAACCATTTTCTTAGCACGAAGAAAGGAGATGATGCACACCGGATTGGAAGTGTAGTCACCCTCCCACACTAACGGATCTGTCCCAGGCTTGGCTAATGTCACCGTTTTAGCATTACAATCCAAGATCGCAAATTGCGGAGAAAGCCAAGTCATACCCAGAATTACATCAAAATCAACCATTTCTAAGATAACCAAATCTACATAAGTGTTGCTCCCCACAAAGTTCACCAAACAAGACCTATATACCTTTTCAACTACCACAGACTCACCCACCGGAGTAGAAACACGAATAGGCATATCAAGTAATTCACAATGTAAATTTAGACCGTTAGCAAATGAGGAAGATACANTAGAAAACGTGGATCCCAGGATC-AACAATACAGAAGCCATGCAATCAC-AATCGAAAGATTACCTGTGATGACAGCATCTAAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0018B07-nGyJi/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E204434" ref_strand="+" ref_description="SGN-E204434 [cLEC-13-J16]">
      <seq>gaatcccttgacaaatcggcggtagtagctagctaacccaacaaagctccttatttctgacacattagtaggtcttacccaattcttcactgtctcaatcttagaaggatccaccatcactccatccttagaaaccacgttccccaagaaggacactacatctagccaaaactcacacttagagaacttggcataaaactttttctccctcaacatttccaataccattctcaaatgctcttcatgttcctccttacttttagagtatatcagtatatcatcaataaatacgatcacaaagagatccaaatatggcttaaaaatcccttttattaaactcataaacgcagcaggggcattcataagaccaaaagacatcactacaaatttgtaatgcccatacctggttctaaaagcagtctttggcacatccgttgcccgtattttcaattgatgataaccggatctcaagtcaatcttagaaaagacacaagcaccttgtaactgatcgaacaagtcattaatg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0018B07-nGyJi/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02SLe0018B07.1" temp_strand="-" temp_description="C02SLe0018B07.1  AC215448.2 htgs_phase:3 submitted_to_sgn_as:C02SLe0018B07 sequenced_by:kribb upload_account_name:korea">
        <position start="37037" stop="35912"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="36737" g_stop="36213" g_length="525"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="525" r_length="525" r_score="0.939"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLe0018B07.1" gen_strand="-" ref_id="SGN-E204434" ref_strand="+">
        <total_alignment_score>0.939</total_alignment_score>
        <cumulative_length_of_scored_exons>525</cumulative_length_of_scored_exons>
        <coverage percentage="0.998" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0018B07.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E204434" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="36737" e_stop="36213"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAATCCCTTGACAAATCGACGGTAATAGCTAGCTAAACCAACAAAACTCCTTATTTCTGACACATTAGTAGGTCTTACCCAATTCTTCACTGTCTCAATCTTAGAAGGATCCACCATCACTCCATCCTTCGACACCACGTGCCCCAAGAAGGACACTGAATCTAGCCAAAACTCACACTTGGAGAATTTGGCATAAAGCTTTTTCTCCCTCAACATTTCCAATACCATTCTCAAATGCTCCTCATGTTCTTTCTTGCTCTTTGAGTATATCAGTATATCATCAATAAATACGATCACAAAGAGATCCAAATATGGCTTAAAAATCCCGTTCATCAAGTTCATGAAAGCAGCAGGGGCATTCGTAAGACCAAAAGACATCACTACAAATTTGTAATGCCCGTACCTGGTCCGAAAAGCAGTCTTTGGCACATCCGTTGCCCGTATATTCAATTGATGATAACCGGATCTCAAGTCAATCTTAGAGAAGACACAAGCACCTTGTAACTGATCGAACAAGTCATCAAT</genome_strand>
        <mrna_strand>GAATCCCTTGACAAATCGGCGGTAGTAGCTAGCTAACCCAACAAAGCTCCTTATTTCTGACACATTAGTAGGTCTTACCCAATTCTTCACTGTCTCAATCTTAGAAGGATCCACCATCACTCCATCCTTAGAAACCACGTTCCCCAAGAAGGACACTACATCTAGCCAAAACTCACACTTAGAGAACTTGGCATAAAACTTTTTCTCCCTCAACATTTCCAATACCATTCTCAAATGCTCTTCATGTTCCTCCTTACTTTTAGAGTATATCAGTATATCATCAATAAATACGATCACAAAGAGATCCAAATATGGCTTAAAAATCCCTTTTATTAAACTCATAAACGCAGCAGGGGCATTCATAAGACCAAAAGACATCACTACAAATTTGTAATGCCCATACCTGGTTCTAAAAGCAGTCTTTGGCACATCCGTTGCCCGTATTTTCAATTGATGATAACCGGATCTCAAGTCAATCTTAGAAAAGACACAAGCACCTTGTAACTGATCGAACAAGTCATTAAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0018B07-nGyJi/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E240817" ref_strand="+" ref_description="SGN-E240817 [cLED-24-J5]">
      <seq>gtctcacccatttcttcactgtctcaatcttaccaggatccaccatcactccatccttagaaaccacgtgccccaagaaggacactgcatctatccaaaactcacacttagagaacttggcataaagctttttctccctcaacatttctaatacaattctcaaatgctcctcatgttccttcttactattagaggatatcagtatatcatcaatgaacatgatgacgcagagatccaaatatggcttaaaatcccgttcatcaagctcatgaacgcagcaggggcattcgtaagaccaaaagacatcactacaaattcgtaatgcccatacctggttctaaaagcagtctttggcaca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0018B07-nGyJi/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02SLe0018B07.1" temp_strand="-" temp_description="C02SLe0018B07.1  AC215448.2 htgs_phase:3 submitted_to_sgn_as:C02SLe0018B07 sequenced_by:kribb upload_account_name:korea">
        <position start="36966" stop="36008"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="36666" g_stop="36308" g_length="359"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="358" r_length="358" r_score="0.916"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLe0018B07.1" gen_strand="-" ref_id="SGN-E240817" ref_strand="+">
        <total_alignment_score>0.916</total_alignment_score>
        <cumulative_length_of_scored_exons>359</cumulative_length_of_scored_exons>
        <coverage percentage="1.003" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0018B07.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E240817" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="36666" e_stop="36308"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTCTTACCCAATTCTTCACTGTCTCAATCTTAGAAGGATCCACCATCACTCCATCCTTCGACACCACGTGCCCCAAGAAGGACACTGAATCTAGCCAAAACTCACACTTGGAGAATTTGGCATAAAGCTTTTTCTCCCTCAACATTTCCAATACCATTCTCAAATGCTCCTCATGTTCTTTCTTGCTCTTTGAGTATATCAGTATATCATCAATAAATACGATCACAAAGAGATCCAAATATGGCTTAAAAATCCCGTTCATCAAGTTCATGAAAGCAGCAGGGGCATTCGTAAGACCAAAAGACATCACTACAAATTTGTAATGCCCGTACCTGGTCCGAAAAGCAGTCTTTGGCACA</genome_strand>
        <mrna_strand>GTCTCACCCATTTCTTCACTGTCTCAATCTTACCAGGATCCACCATCACTCCATCCTTAGAAACCACGTGCCCCAAGAAGGACACTGCATCTATCCAAAACTCACACTTAGAGAACTTGGCATAAAGCTTTTTCTCCCTCAACATTTCTAATACAATTCTCAAATGCTCCTCATGTTCCTTCTTACTATTAGAGGATATCAGTATATCATCAATGAACATGATGACGCAGAGATCCAAATATGGCTT-AAAATCCCGTTCATCAAGCTCATGAACGCAGCAGGGGCATTCGTAAGACCAAAAGACATCACTACAAATTCGTAATGCCCATACCTGGTTCTAAAAGCAGTCTTTGGCACA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0018B07-nGyJi/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E577888" ref_strand="+" ref_description="SGN-E577888 [LE08BA01]">
      <seq>ctacatctcctaccatacaatgcttcaaatggagccatatcaatgcttgattgatagctattattgtatgaaaactccgctaagggtaggaagctatcccaatgaccaccaaactctatcacacacgcacgaagcatattctccaacacttgaatcgttcgctcagactgaccatcgggagaactagt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0018B07-nGyJi/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02SLe0018B07.1" temp_strand="-" temp_description="C02SLe0018B07.1  AC215448.2 htgs_phase:3 submitted_to_sgn_as:C02SLe0018B07 sequenced_by:kribb upload_account_name:korea">
        <position start="38519" stop="37742"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="38219" g_stop="38043" g_length="177"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="177" r_length="177" r_score="0.932"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLe0018B07.1" gen_strand="-" ref_id="SGN-E577888" ref_strand="+">
        <total_alignment_score>0.932</total_alignment_score>
        <cumulative_length_of_scored_exons>177</cumulative_length_of_scored_exons>
        <coverage percentage="0.941" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0018B07.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E577888" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="38219" e_stop="38043"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTAAATCTCCTCCCATACAATGCTTCGAATGGAGCCATATCAATACTTGAGTGATAGCTATTATTGTATGAAAACTCCGCTAAGGGTAAGAAGCTATCCCAATGGCCACCAAACTCTATCACGCATGCATGAAGCATATCCTCCAACACTTGAATCGTTCTCTCAGACTGACCATCG</genome_strand>
        <mrna_strand>CTACATCTCCTACCATACAATGCTTCAAATGGAGCCATATCAATGCTTGATTGATAGCTATTATTGTATGAAAACTCCGCTAAGGGTAGGAAGCTATCCCAATGACCACCAAACTCTATCACACACGCACGAAGCATATTCTCCAACACTTGAATCGTTCGCTCAGACTGACCATCG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0018B07-nGyJi/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E365340" ref_strand="+" ref_description="SGN-E365340 [cLPT-2-J17]">
      <seq>agtaaacaactcctaaaaatattcaatcaacatcatacagccagcagtagagtgttttgtggtctgcacatagagagggcaccacttagggatcctttcgattgagcaaaaaaaaaatctgcatttttctataaattagctggtgtccacgatggttgcacaaggcttcactgtggatttagataagccacttgtacaccaggttggccaccttggagaagcttatcaagagtgggttcaccagcccattgtcagcaaggaaggtcctcgattttttgctagtgacttttgggagtttctgactcgcacagtttggtgggcaattcctaccatatggcttccagttgtgtgctatagcatctccgtttctatccgtatgggtcgtactgttccagaggtggcactgttggtggtttttggcattttcatctggacactgatggaatacactcttcatcgntttcttttccatatcaatacaacgagctattggggaaacactattcattatcttcttcatggctgtcatcataagcatcccatgga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0018B07-nGyJi/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02SLe0018B07.1" temp_strand="+" temp_description="C02SLe0018B07.1  AC215448.2 htgs_phase:3 submitted_to_sgn_as:C02SLe0018B07 sequenced_by:kribb upload_account_name:korea">
        <position start="60157" stop="63717"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="60448" g_stop="60580" g_length="133"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="132" r_length="132" r_score="0.925"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="60581" i_stop="62129" i_length="1549">
            <donor d_prob="0.859" d_score="0.94"/>
            <acceptor a_prob="0.702" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="62130" g_stop="62199" g_length="70"/>
          <reference_exon_boundary r_type="cDNA" r_start="133" r_stop="202" r_length="70" r_score="0.986"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="62200" i_stop="62786" i_length="587">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.979" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="62787" g_stop="62879" g_length="93"/>
          <reference_exon_boundary r_type="cDNA" r_start="203" r_stop="295" r_length="93" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="62880" i_stop="63060" i_length="181">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.882" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="63061" g_stop="63257" g_length="197"/>
          <reference_exon_boundary r_type="cDNA" r_start="296" r_stop="492" r_length="197" r_score="0.990"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="63258" i_stop="63363" i_length="106">
            <donor d_prob="0.781" d_score="0.98"/>
            <acceptor a_prob="0.994" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="63364" g_stop="63417" g_length="54"/>
          <reference_exon_boundary r_type="cDNA" r_start="493" r_stop="546" r_length="54" r_score="0.981"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLe0018B07.1" gen_strand="+" ref_id="SGN-E365340" ref_strand="+">
        <total_alignment_score>0.974</total_alignment_score>
        <cumulative_length_of_scored_exons>547</cumulative_length_of_scored_exons>
        <coverage percentage="1.002" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0018B07.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E365340" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="60448" e_stop="60580"/>
          <exon e_start="62130" e_stop="62199"/>
          <exon e_start="62787" e_stop="62879"/>
          <exon e_start="63061" e_stop="63257"/>
          <exon e_start="63364" e_stop="63417"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGTAAAGTAAACAACTAAAAATATTCAATCAACATCACACAGCCAGCAGTAGAGTGTTTTGTGGTCTGCACATAGAGAGGGCACCACTTAGGGATCCTTTCAATTGAGC-AAAAAAAAATCTGCATTTTTCTATGTAAGTATCTTCTTGATTCTCTTTGTTATGGTTGGGTTTTGGCCATTTGTGAAATAGATCTCTGTTGTTAGAGTATTTGGGGTTTTGAGATTTATGGTTTTTTAATGTCTGGTGGTGTGAATGTACAAAAAAAATTGAATCTTTACATGTAAATTGAATTATTGAAGTTCATATATGTAAATTGAATCTGAGGTGTGAGGTCTGCATACACTATGTACCCTCCCTAGACCCTACTTGTGGGATTTCAATGGGTATGTTGTTGTTGTTGTATATTTGTTAATTGAATTGTTGAAGTTCTTTATGTATCTACAAGGGTTTTGATGTTCTTTATGTATCTTTACATGTATATTGAATTATTGAAGTTCATATATGTAAATTGAATCTGAGGTGTAAGGTCTGCATACAATATGAACCCTCCTTAGACCCTAATTGTGGGATTTCAATGGGTATGTTGTTGTTGTATATTTGTAAATTGAATTGTTGAAGTTCTTTATGTATTTACAAGGGTTTCGATGTAATTCATGATGTTTACTTGAAGAATTAAAGGCTTATAGATGTCATGACTGATCCAAGTATATGATTTTAAGCAAGTTGCTTTTGTGTATTTTATGCATTGGGGCTTTAATATTATCAAATCTACGGTGTGATTTAACTAATCGATTACGTTTTGTGTCTTGTTATTCTTTCTTTTTTGGGTCAAAGAACATAAAAAGATAATCTGAAGGTGATTTGAGAATGTATGAATTTCTCTGCCTGTAAAAATGATAATTGATACATTCATTTCATGTTTGTAAAGGAGATCATTTTCAAGTATTTTTTTTCTGCCAATCTGCTAAGACTGATATACTGAAAAATTGATGCATTCTTCTATAAACTGAATGTTATGAAAATCGATAGCTTGTGTGCTTGAGGGCAAAATTTTAAATATTCGAGCCTGAGTTGATACTTTCTGCAATCTCTTTTCTTGCTTGTTTATTTACAATTTATGGTTACTGTGAAGCTCTTACTGTTGTTTCATTTGAATGAGAGTAAAATAATGATATATGGACTCATCGCTTCTTTTTTTCTTGATTTTTGCAATTTCATTTGACATCATATATAAGTTATTTGATGTTTGCTTGATCAAATACTCTTGTCTCATATAAAAAAGGAAATGTGCATTGCACAGTTTACCAAAAGTTACCTTGAAAATAGTTGCAATTAAGTAGGCCAAGCTATATTTGGTTGAGTTAGTAGTTCTCCAGGAGCACCCTGAAGTAAATATAACATGAAATCTTGTCTGGACTCAATCGTGGAGCTACTTAATTAGCTTAAATGCCCAAAGAGATGGAATAACTCACCAAGCGCCAAGATGTGTTAACGAGTAAATTTTTTAAAGATAAAATCATCAAATAGGACCTTGTGGATGGCTATATGATCTGTCTTCTATTTTCTTTATTGGAACTGTTCTCATCTCAATAGGTGCTCTTGAACTTCTTATTGAATATCTCACGTAGAAACATATCTTAGCAGCCTTCTAACTACATTCTGTTTCCTTTGCTATATCTAGCAATTAGCTGGTGTCCACGATGGTTGCACAAGGCTTCACTGTGGATTTAGATAAGCCACTTGTACACCAGGTAAAACTCTACAATCTACATCTTATATTTATTTTCTTCCGTCCTATTTTATTTATTACCTAACTTGGGGGAAGTAAATGGTTTTTTAACTACATTTCTTCTCATATTTATTAAATAATGTTAAAGAATATTTTTAGTCCACCTTATAGTTGGGAGTTGGGACTATATTTAGCCACATTAATATGTTTACTCTTGTCTTATGCTTTCTAGAGGTCTTTTAATCCAATTTGACATATGTATATGCCACTACGAAATATAGAAACTTCTAGTAAGGATTCATATACCATACTCCATGTCCCCAACTAGCTTAGGATTAAGGTGTAGTAATAGTAGTAGTTGTATAGTAATTCATTTGCTCCAATTACGTGACACTCTTTCCATTTGGGGCATTTCAAATTATTCGATGGAGTTCACTGCTAAATATTATTCTCTATGTTATTCTTAAAGTTGCAAGAATTCCAAACTCATTAACTATTTAGCTTTTCAACTCTGATATGATGCTTTCTCTATGAAACTCTCTTTTTGGTTATTACTTCAATATTTTCCTCCACTCTCATTAATATAGTACTGGCCAAATGTGCTCTCAGGTTGGCCACCTTGGAGAAGCTTATCAAGAGTGGGTTCACCAGCCCATTGTCAGCAAGGAAGGTCCTCGATTTTTTGCTAGTGACTTTTGGGAGGTATAGTTACTGTTAGAATTATTCATTTTTTCATTTTCCATACGTGTCTATGTAAGACAAGATTGATATAAAACTTGCTAGATTGTGTCCCATACAAATACCCCACCCCACGTGAAATAATTCATTTTCACATCATCTGACTATGTACATAAGATATTGATACCTTTAATTTGTGAAACAGTTTCTGACTCGCACAGTTTGGTGGGCAATTCCTACCATATGGCTTCCAGTTGTGTGCTATAGCATCTCTGTTTCTATCCGTATGGGTCGTACTGTTCCAGAGGTGGCACTGTTGGTGGTTTTTGGCATTTTCATCTGGACACTGATGGAATACACTCTTCATCGTTTTCTTTTCCATATCAATACAACGAGCTATTGGTTAGTGCTCTCCCTGTTCTTTTAGTAACCTGAGAAGGGAATGTTCTTCTAGCCCTCTGCTTCAGGTTCTTTATTCCTGTGTGCTTAAACTGATCTTTTGTTACAGGGGAAACACAATTCATTATCTTCTTCATGGCTGTCATCATAAGCATCCCATGGA</genome_strand>
        <mrna_strand>AGTAAA--CAACTCCTAAAAATATTCAATCAACATCATACAGCCAGCAGTAGAGTGTTTTGTGGTCTGCACATAGAGAGGGCACCACTTAGGGATCCTTTCGATTGAGCAAAAAAAAAATCTGCATTTTTCTAT.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAATTAGCTGGTGTCCACGATGGTTGCACAAGGCTTCACTGTGGATTTAGATAAGCCACTTGTACACCAG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTGGCCACCTTGGAGAAGCTTATCAAGAGTGGGTTCACCAGCCCATTGTCAGCAAGGAAGGTCCTCGATTTTTTGCTAGTGACTTTTGGGAG.....................................................................................................................................................................................TTTCTGACTCGCACAGTTTGGTGGGCAATTCCTACCATATGGCTTCCAGTTGTGTGCTATAGCATCTCCGTTTCTATCCGTATGGGTCGTACTGTTCCAGAGGTGGCACTGTTGGTGGTTTTTGGCATTTTCATCTGGACACTGATGGAATACACTCTTCATCGNTTTCTTTTCCATATCAATACAACGAGCTATTG..........................................................................................................GGGAAACACTATTCATTATCTTCTTCATGGCTGTCATCATAAGCATCCCATGGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0018B07-nGyJi/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E279374" ref_strand="-" ref_description="SGN-E279374 [cLEL-4-P22](-)">
      <seq>gcacgagaaaatattcaatcaacatcacacagccagcagtagagtgttttgtggtctgcacatagagagggcaccacttagggatcctttcaattgagcaaaaaaaatctgcatttttctatcaattagctggtgtccacgatggttgcacaaggcttcactgtggatttagataagccacttgtacaccaggttggccaccttggagaagcttatcaagagtgggttcaccagcccattgtcagcaaggaaggtcctcgattttttgctagtgacttttgggaagtttctgactcgcacagtttgggtgggcaattcctaccatatggcttccagntggtgtgctatagcatcttctgtttctat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0018B07-nGyJi/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02SLe0018B07.1" temp_strand="+" temp_description="C02SLe0018B07.1  AC215448.2 htgs_phase:3 submitted_to_sgn_as:C02SLe0018B07 sequenced_by:kribb upload_account_name:korea">
        <position start="60161" stop="63437"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="60458" g_stop="60580" g_length="123"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="122" r_length="122" r_score="0.951"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="60581" i_stop="62129" i_length="1549">
            <donor d_prob="0.859" d_score="0.98"/>
            <acceptor a_prob="0.702" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="62130" g_stop="62199" g_length="70"/>
          <reference_exon_boundary r_type="cDNA" r_start="123" r_stop="192" r_length="70" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="62200" i_stop="62786" i_length="587">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.979" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="62787" g_stop="62879" g_length="93"/>
          <reference_exon_boundary r_type="cDNA" r_start="193" r_stop="286" r_length="94" r_score="0.978"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="62880" i_stop="63060" i_length="181">
            <donor d_prob="0.999" d_score="0.96"/>
            <acceptor a_prob="0.882" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="63061" g_stop="63137" g_length="77"/>
          <reference_exon_boundary r_type="cDNA" r_start="287" r_stop="366" r_length="80" r_score="0.909"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLe0018B07.1" gen_strand="+" ref_id="SGN-E279374" ref_strand="-">
        <total_alignment_score>0.959</total_alignment_score>
        <cumulative_length_of_scored_exons>363</cumulative_length_of_scored_exons>
        <coverage percentage="0.992" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0018B07.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E279374" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="60458" e_stop="60580"/>
          <exon e_start="62130" e_stop="62199"/>
          <exon e_start="62787" e_stop="62879"/>
          <exon e_start="63061" e_stop="63137"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACAACTAAAAATATTCAATCAACATCACACAGCCAGCAGTAGAGTGTTTTGTGGTCTGCACATAGAGAGGGCACCACTTAGGGATCCTTTCAATTGAGCAAAAAAAAATCTGCATTTTTCTATGTAAGTATCTTCTTGATTCTCTTTGTTATGGTTGGGTTTTGGCCATTTGTGAAATAGATCTCTGTTGTTAGAGTATTTGGGGTTTTGAGATTTATGGTTTTTTAATGTCTGGTGGTGTGAATGTACAAAAAAAATTGAATCTTTACATGTAAATTGAATTATTGAAGTTCATATATGTAAATTGAATCTGAGGTGTGAGGTCTGCATACACTATGTACCCTCCCTAGACCCTACTTGTGGGATTTCAATGGGTATGTTGTTGTTGTTGTATATTTGTTAATTGAATTGTTGAAGTTCTTTATGTATCTACAAGGGTTTTGATGTTCTTTATGTATCTTTACATGTATATTGAATTATTGAAGTTCATATATGTAAATTGAATCTGAGGTGTAAGGTCTGCATACAATATGAACCCTCCTTAGACCCTAATTGTGGGATTTCAATGGGTATGTTGTTGTTGTATATTTGTAAATTGAATTGTTGAAGTTCTTTATGTATTTACAAGGGTTTCGATGTAATTCATGATGTTTACTTGAAGAATTAAAGGCTTATAGATGTCATGACTGATCCAAGTATATGATTTTAAGCAAGTTGCTTTTGTGTATTTTATGCATTGGGGCTTTAATATTATCAAATCTACGGTGTGATTTAACTAATCGATTACGTTTTGTGTCTTGTTATTCTTTCTTTTTTGGGTCAAAGAACATAAAAAGATAATCTGAAGGTGATTTGAGAATGTATGAATTTCTCTGCCTGTAAAAATGATAATTGATACATTCATTTCATGTTTGTAAAGGAGATCATTTTCAAGTATTTTTTTTCTGCCAATCTGCTAAGACTGATATACTGAAAAATTGATGCATTCTTCTATAAACTGAATGTTATGAAAATCGATAGCTTGTGTGCTTGAGGGCAAAATTTTAAATATTCGAGCCTGAGTTGATACTTTCTGCAATCTCTTTTCTTGCTTGTTTATTTACAATTTATGGTTACTGTGAAGCTCTTACTGTTGTTTCATTTGAATGAGAGTAAAATAATGATATATGGACTCATCGCTTCTTTTTTTCTTGATTTTTGCAATTTCATTTGACATCATATATAAGTTATTTGATGTTTGCTTGATCAAATACTCTTGTCTCATATAAAAAAGGAAATGTGCATTGCACAGTTTACCAAAAGTTACCTTGAAAATAGTTGCAATTAAGTAGGCCAAGCTATATTTGGTTGAGTTAGTAGTTCTCCAGGAGCACCCTGAAGTAAATATAACATGAAATCTTGTCTGGACTCAATCGTGGAGCTACTTAATTAGCTTAAATGCCCAAAGAGATGGAATAACTCACCAAGCGCCAAGATGTGTTAACGAGTAAATTTTTTAAAGATAAAATCATCAAATAGGACCTTGTGGATGGCTATATGATCTGTCTTCTATTTTCTTTATTGGAACTGTTCTCATCTCAATAGGTGCTCTTGAACTTCTTATTGAATATCTCACGTAGAAACATATCTTAGCAGCCTTCTAACTACATTCTGTTTCCTTTGCTATATCTAGCAATTAGCTGGTGTCCACGATGGTTGCACAAGGCTTCACTGTGGATTTAGATAAGCCACTTGTACACCAGGTAAAACTCTACAATCTACATCTTATATTTATTTTCTTCCGTCCTATTTTATTTATTACCTAACTTGGGGGAAGTAAATGGTTTTTTAACTACATTTCTTCTCATATTTATTAAATAATGTTAAAGAATATTTTTAGTCCACCTTATAGTTGGGAGTTGGGACTATATTTAGCCACATTAATATGTTTACTCTTGTCTTATGCTTTCTAGAGGTCTTTTAATCCAATTTGACATATGTATATGCCACTACGAAATATAGAAACTTCTAGTAAGGATTCATATACCATACTCCATGTCCCCAACTAGCTTAGGATTAAGGTGTAGTAATAGTAGTAGTTGTATAGTAATTCATTTGCTCCAATTACGTGACACTCTTTCCATTTGGGGCATTTCAAATTATTCGATGGAGTTCACTGCTAAATATTATTCTCTATGTTATTCTTAAAGTTGCAAGAATTCCAAACTCATTAACTATTTAGCTTTTCAACTCTGATATGATGCTTTCTCTATGAAACTCTCTTTTTGGTTATTACTTCAATATTTTCCTCCACTCTCATTAATATAGTACTGGCCAAATGTGCTCTCAGGTTGGCCACCTTGGAGAAGCTTATCAAGAGTGGGTTCACCAGCCCATTGTCAGCAAGGAAGGTCCTCGATTTTTTGCTAGTGACTTTTGGG-AGGTATAGTTACTGTTAGAATTATTCATTTTTTCATTTTCCATACGTGTCTATGTAAGACAAGATTGATATAAAACTTGCTAGATTGTGTCCCATACAAATACCCCACCCCACGTGAAATAATTCATTTTCACATCATCTGACTATGTACATAAGATATTGATACCTTTAATTTGTGAAACAGTTTCTGACTCGCACAGTTT-GGTGGGCAATTCCTACCATATGGCTTCCAGTT-GTGTGCTATAGCATC-TCTGTTTCTAT</genome_strand>
        <mrna_strand>GCACGAGAAAATATTCAATCAACATCACACAGCCAGCAGTAGAGTGTTTTGTGGTCTGCACATAGAGAGGGCACCACTTAGGGATCCTTTCAATTGAGC-AAAAAAAATCTGCATTTTTCTAT.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAATTAGCTGGTGTCCACGATGGTTGCACAAGGCTTCACTGTGGATTTAGATAAGCCACTTGTACACCAG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTGGCCACCTTGGAGAAGCTTATCAAGAGTGGGTTCACCAGCCCATTGTCAGCAAGGAAGGTCCTCGATTTTTTGCTAGTGACTTTTGGGAAG.....................................................................................................................................................................................TTTCTGACTCGCACAGTTTGGGTGGGCAATTCCTACCATATGGCTTCCAGNTGGTGTGCTATAGCATCTTCTGTTTCTAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0018B07-nGyJi/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E285048" ref_strand="+" ref_description="SGN-E285048 [cLER-19-B2]">
      <seq>atattcaatcaacatcacacagccagcagtagagtgttttgtggtctgcacatagagagggcaccacttagggatcctttcaattgagcaaaaaaaatctgcatttttctatcaattagctggtgtccacgatggttgcacaaggcttcactgtggatttagataagccacttgtacaccaggttggccaccttggagaagcttatcaagagtgggttcaccagcccattgtcagcaaggaaggtcctcgattttttgctagtgacttttgggagtttctgactcgcacagtttggtgggcaattcctaccatatggcttccagttgtgtgctatagcatctctgtttctatccgtatgggtcgtactgttccagaggtggcactgttggtggtttttggcattttcatctggacactgatggaatacactcttcatcgttttcttttccatatcaatacaacgagctattggggaaacacaattcattatcttcttcatggctgtcatcataagcatcccatggatggtcta</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0018B07-nGyJi/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02SLe0018B07.1" temp_strand="+" temp_description="C02SLe0018B07.1  AC215448.2 htgs_phase:3 submitted_to_sgn_as:C02SLe0018B07 sequenced_by:kribb upload_account_name:korea">
        <position start="60168" stop="63724"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="60468" g_stop="60580" g_length="113"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="112" r_length="112" r_score="0.991"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="60581" i_stop="62129" i_length="1549">
            <donor d_prob="0.859" d_score="0.98"/>
            <acceptor a_prob="0.702" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="62130" g_stop="62199" g_length="70"/>
          <reference_exon_boundary r_type="cDNA" r_start="113" r_stop="182" r_length="70" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="62200" i_stop="62786" i_length="587">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.979" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="62787" g_stop="62879" g_length="93"/>
          <reference_exon_boundary r_type="cDNA" r_start="183" r_stop="275" r_length="93" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="62880" i_stop="63060" i_length="181">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.882" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="63061" g_stop="63257" g_length="197"/>
          <reference_exon_boundary r_type="cDNA" r_start="276" r_stop="472" r_length="197" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="63258" i_stop="63363" i_length="106">
            <donor d_prob="0.781" d_score="1.00"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="63364" g_stop="63424" g_length="61"/>
          <reference_exon_boundary r_type="cDNA" r_start="473" r_stop="533" r_length="61" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLe0018B07.1" gen_strand="+" ref_id="SGN-E285048" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>534</cumulative_length_of_scored_exons>
        <coverage percentage="1.002" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0018B07.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E285048" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="60468" e_stop="60580"/>
          <exon e_start="62130" e_stop="62199"/>
          <exon e_start="62787" e_stop="62879"/>
          <exon e_start="63061" e_stop="63257"/>
          <exon e_start="63364" e_stop="63424"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATATTCAATCAACATCACACAGCCAGCAGTAGAGTGTTTTGTGGTCTGCACATAGAGAGGGCACCACTTAGGGATCCTTTCAATTGAGCAAAAAAAAATCTGCATTTTTCTATGTAAGTATCTTCTTGATTCTCTTTGTTATGGTTGGGTTTTGGCCATTTGTGAAATAGATCTCTGTTGTTAGAGTATTTGGGGTTTTGAGATTTATGGTTTTTTAATGTCTGGTGGTGTGAATGTACAAAAAAAATTGAATCTTTACATGTAAATTGAATTATTGAAGTTCATATATGTAAATTGAATCTGAGGTGTGAGGTCTGCATACACTATGTACCCTCCCTAGACCCTACTTGTGGGATTTCAATGGGTATGTTGTTGTTGTTGTATATTTGTTAATTGAATTGTTGAAGTTCTTTATGTATCTACAAGGGTTTTGATGTTCTTTATGTATCTTTACATGTATATTGAATTATTGAAGTTCATATATGTAAATTGAATCTGAGGTGTAAGGTCTGCATACAATATGAACCCTCCTTAGACCCTAATTGTGGGATTTCAATGGGTATGTTGTTGTTGTATATTTGTAAATTGAATTGTTGAAGTTCTTTATGTATTTACAAGGGTTTCGATGTAATTCATGATGTTTACTTGAAGAATTAAAGGCTTATAGATGTCATGACTGATCCAAGTATATGATTTTAAGCAAGTTGCTTTTGTGTATTTTATGCATTGGGGCTTTAATATTATCAAATCTACGGTGTGATTTAACTAATCGATTACGTTTTGTGTCTTGTTATTCTTTCTTTTTTGGGTCAAAGAACATAAAAAGATAATCTGAAGGTGATTTGAGAATGTATGAATTTCTCTGCCTGTAAAAATGATAATTGATACATTCATTTCATGTTTGTAAAGGAGATCATTTTCAAGTATTTTTTTTCTGCCAATCTGCTAAGACTGATATACTGAAAAATTGATGCATTCTTCTATAAACTGAATGTTATGAAAATCGATAGCTTGTGTGCTTGAGGGCAAAATTTTAAATATTCGAGCCTGAGTTGATACTTTCTGCAATCTCTTTTCTTGCTTGTTTATTTACAATTTATGGTTACTGTGAAGCTCTTACTGTTGTTTCATTTGAATGAGAGTAAAATAATGATATATGGACTCATCGCTTCTTTTTTTCTTGATTTTTGCAATTTCATTTGACATCATATATAAGTTATTTGATGTTTGCTTGATCAAATACTCTTGTCTCATATAAAAAAGGAAATGTGCATTGCACAGTTTACCAAAAGTTACCTTGAAAATAGTTGCAATTAAGTAGGCCAAGCTATATTTGGTTGAGTTAGTAGTTCTCCAGGAGCACCCTGAAGTAAATATAACATGAAATCTTGTCTGGACTCAATCGTGGAGCTACTTAATTAGCTTAAATGCCCAAAGAGATGGAATAACTCACCAAGCGCCAAGATGTGTTAACGAGTAAATTTTTTAAAGATAAAATCATCAAATAGGACCTTGTGGATGGCTATATGATCTGTCTTCTATTTTCTTTATTGGAACTGTTCTCATCTCAATAGGTGCTCTTGAACTTCTTATTGAATATCTCACGTAGAAACATATCTTAGCAGCCTTCTAACTACATTCTGTTTCCTTTGCTATATCTAGCAATTAGCTGGTGTCCACGATGGTTGCACAAGGCTTCACTGTGGATTTAGATAAGCCACTTGTACACCAGGTAAAACTCTACAATCTACATCTTATATTTATTTTCTTCCGTCCTATTTTATTTATTACCTAACTTGGGGGAAGTAAATGGTTTTTTAACTACATTTCTTCTCATATTTATTAAATAATGTTAAAGAATATTTTTAGTCCACCTTATAGTTGGGAGTTGGGACTATATTTAGCCACATTAATATGTTTACTCTTGTCTTATGCTTTCTAGAGGTCTTTTAATCCAATTTGACATATGTATATGCCACTACGAAATATAGAAACTTCTAGTAAGGATTCATATACCATACTCCATGTCCCCAACTAGCTTAGGATTAAGGTGTAGTAATAGTAGTAGTTGTATAGTAATTCATTTGCTCCAATTACGTGACACTCTTTCCATTTGGGGCATTTCAAATTATTCGATGGAGTTCACTGCTAAATATTATTCTCTATGTTATTCTTAAAGTTGCAAGAATTCCAAACTCATTAACTATTTAGCTTTTCAACTCTGATATGATGCTTTCTCTATGAAACTCTCTTTTTGGTTATTACTTCAATATTTTCCTCCACTCTCATTAATATAGTACTGGCCAAATGTGCTCTCAGGTTGGCCACCTTGGAGAAGCTTATCAAGAGTGGGTTCACCAGCCCATTGTCAGCAAGGAAGGTCCTCGATTTTTTGCTAGTGACTTTTGGGAGGTATAGTTACTGTTAGAATTATTCATTTTTTCATTTTCCATACGTGTCTATGTAAGACAAGATTGATATAAAACTTGCTAGATTGTGTCCCATACAAATACCCCACCCCACGTGAAATAATTCATTTTCACATCATCTGACTATGTACATAAGATATTGATACCTTTAATTTGTGAAACAGTTTCTGACTCGCACAGTTTGGTGGGCAATTCCTACCATATGGCTTCCAGTTGTGTGCTATAGCATCTCTGTTTCTATCCGTATGGGTCGTACTGTTCCAGAGGTGGCACTGTTGGTGGTTTTTGGCATTTTCATCTGGACACTGATGGAATACACTCTTCATCGTTTTCTTTTCCATATCAATACAACGAGCTATTGGTTAGTGCTCTCCCTGTTCTTTTAGTAACCTGAGAAGGGAATGTTCTTCTAGCCCTCTGCTTCAGGTTCTTTATTCCTGTGTGCTTAAACTGATCTTTTGTTACAGGGGAAACACAATTCATTATCTTCTTCATGGCTGTCATCATAAGCATCCCATGGATGGTCTA</genome_strand>
        <mrna_strand>ATATTCAATCAACATCACACAGCCAGCAGTAGAGTGTTTTGTGGTCTGCACATAGAGAGGGCACCACTTAGGGATCCTTTCAATTGAGC-AAAAAAAATCTGCATTTTTCTAT.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAATTAGCTGGTGTCCACGATGGTTGCACAAGGCTTCACTGTGGATTTAGATAAGCCACTTGTACACCAG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTGGCCACCTTGGAGAAGCTTATCAAGAGTGGGTTCACCAGCCCATTGTCAGCAAGGAAGGTCCTCGATTTTTTGCTAGTGACTTTTGGGAG.....................................................................................................................................................................................TTTCTGACTCGCACAGTTTGGTGGGCAATTCCTACCATATGGCTTCCAGTTGTGTGCTATAGCATCTCTGTTTCTATCCGTATGGGTCGTACTGTTCCAGAGGTGGCACTGTTGGTGGTTTTTGGCATTTTCATCTGGACACTGATGGAATACACTCTTCATCGTTTTCTTTTCCATATCAATACAACGAGCTATTG..........................................................................................................GGGAAACACAATTCATTATCTTCTTCATGGCTGTCATCATAAGCATCCCATGGATGGTCTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0018B07-nGyJi/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E709423" ref_strand="+" ref_description="SGN-E709423 [FA51DH11]">
      <seq>cccgtcagtagagtgttttgtggtctgcacatagagagggcaccacttagggatcctttcaattgagcaaaaaaaaatctgcatttttctatcaattagctggtgtccacgatggttgcacaaggcttcactgtggatttagataagccacttgtacaccaggttggccaccttggagaagcttatcaagagtgggttcaccagcccattgtcagcaaggaaggtcctcgattttttgctagtgacttttgggagtttctgactcgcacagtttggtgggcaattcctaccatatggcttccagttgtgtgctatagcatctctgtttctatccgtatgggtcgtactgttccagaggtggcactgttggtggtttttggcattttcatctggacactgatggaatacactcttcatcgttttcttttccatatcaatacaacgagctattggggaaacacaattcattatcttcttcatggctgtcatcataagcatcccatggatggtctacggctggtttttcctcctgctgcaacggctattctcctcgtaccattctggaacttgatcaaattgctggcaactcccactactgctcctgctttgtttggaggcggtttattgggctatgttatgtatgatgtaacccactactacttgcatcacgggcaaccaacagttgaagtgcctaaaaatctcaagaaatatcacttgaatcatcattttcgtatccagaacaaaggttttggtatcacctcttccttctgggacaaagtgtttggaactctaccacatt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0018B07-nGyJi/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02SLe0018B07.1" temp_strand="+" temp_description="C02SLe0018B07.1  AC215448.2 htgs_phase:3 submitted_to_sgn_as:C02SLe0018B07 sequenced_by:kribb upload_account_name:korea">
        <position start="60190" stop="64963"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="60489" g_stop="60580" g_length="92"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="92" r_length="92" r_score="0.967"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="60581" i_stop="62129" i_length="1549">
            <donor d_prob="0.859" d_score="1.00"/>
            <acceptor a_prob="0.702" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="62130" g_stop="62199" g_length="70"/>
          <reference_exon_boundary r_type="cDNA" r_start="93" r_stop="162" r_length="70" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="62200" i_stop="62786" i_length="587">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.979" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="62787" g_stop="62879" g_length="93"/>
          <reference_exon_boundary r_type="cDNA" r_start="163" r_stop="255" r_length="93" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="62880" i_stop="63060" i_length="181">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.882" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="63061" g_stop="63257" g_length="197"/>
          <reference_exon_boundary r_type="cDNA" r_start="256" r_stop="452" r_length="197" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="63258" i_stop="63363" i_length="106">
            <donor d_prob="0.781" d_score="1.00"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="63364" g_stop="63469" g_length="106"/>
          <reference_exon_boundary r_type="cDNA" r_start="453" r_stop="558" r_length="106" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="63470" i_stop="64018" i_length="549">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.992" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="64019" g_stop="64165" g_length="147"/>
          <reference_exon_boundary r_type="cDNA" r_start="559" r_stop="705" r_length="147" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="64166" i_stop="64569" i_length="404">
            <donor d_prob="0.991" d_score="1.00"/>
            <acceptor a_prob="0.619" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="64570" g_stop="64663" g_length="94"/>
          <reference_exon_boundary r_type="cDNA" r_start="706" r_stop="799" r_length="94" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLe0018B07.1" gen_strand="+" ref_id="SGN-E709423" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>799</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0018B07.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E709423" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="60489" e_stop="60580"/>
          <exon e_start="62130" e_stop="62199"/>
          <exon e_start="62787" e_stop="62879"/>
          <exon e_start="63061" e_stop="63257"/>
          <exon e_start="63364" e_stop="63469"/>
          <exon e_start="64019" e_stop="64165"/>
          <exon e_start="64570" e_stop="64663"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCCAGCAGTAGAGTGTTTTGTGGTCTGCACATAGAGAGGGCACCACTTAGGGATCCTTTCAATTGAGCAAAAAAAAATCTGCATTTTTCTATGTAAGTATCTTCTTGATTCTCTTTGTTATGGTTGGGTTTTGGCCATTTGTGAAATAGATCTCTGTTGTTAGAGTATTTGGGGTTTTGAGATTTATGGTTTTTTAATGTCTGGTGGTGTGAATGTACAAAAAAAATTGAATCTTTACATGTAAATTGAATTATTGAAGTTCATATATGTAAATTGAATCTGAGGTGTGAGGTCTGCATACACTATGTACCCTCCCTAGACCCTACTTGTGGGATTTCAATGGGTATGTTGTTGTTGTTGTATATTTGTTAATTGAATTGTTGAAGTTCTTTATGTATCTACAAGGGTTTTGATGTTCTTTATGTATCTTTACATGTATATTGAATTATTGAAGTTCATATATGTAAATTGAATCTGAGGTGTAAGGTCTGCATACAATATGAACCCTCCTTAGACCCTAATTGTGGGATTTCAATGGGTATGTTGTTGTTGTATATTTGTAAATTGAATTGTTGAAGTTCTTTATGTATTTACAAGGGTTTCGATGTAATTCATGATGTTTACTTGAAGAATTAAAGGCTTATAGATGTCATGACTGATCCAAGTATATGATTTTAAGCAAGTTGCTTTTGTGTATTTTATGCATTGGGGCTTTAATATTATCAAATCTACGGTGTGATTTAACTAATCGATTACGTTTTGTGTCTTGTTATTCTTTCTTTTTTGGGTCAAAGAACATAAAAAGATAATCTGAAGGTGATTTGAGAATGTATGAATTTCTCTGCCTGTAAAAATGATAATTGATACATTCATTTCATGTTTGTAAAGGAGATCATTTTCAAGTATTTTTTTTCTGCCAATCTGCTAAGACTGATATACTGAAAAATTGATGCATTCTTCTATAAACTGAATGTTATGAAAATCGATAGCTTGTGTGCTTGAGGGCAAAATTTTAAATATTCGAGCCTGAGTTGATACTTTCTGCAATCTCTTTTCTTGCTTGTTTATTTACAATTTATGGTTACTGTGAAGCTCTTACTGTTGTTTCATTTGAATGAGAGTAAAATAATGATATATGGACTCATCGCTTCTTTTTTTCTTGATTTTTGCAATTTCATTTGACATCATATATAAGTTATTTGATGTTTGCTTGATCAAATACTCTTGTCTCATATAAAAAAGGAAATGTGCATTGCACAGTTTACCAAAAGTTACCTTGAAAATAGTTGCAATTAAGTAGGCCAAGCTATATTTGGTTGAGTTAGTAGTTCTCCAGGAGCACCCTGAAGTAAATATAACATGAAATCTTGTCTGGACTCAATCGTGGAGCTACTTAATTAGCTTAAATGCCCAAAGAGATGGAATAACTCACCAAGCGCCAAGATGTGTTAACGAGTAAATTTTTTAAAGATAAAATCATCAAATAGGACCTTGTGGATGGCTATATGATCTGTCTTCTATTTTCTTTATTGGAACTGTTCTCATCTCAATAGGTGCTCTTGAACTTCTTATTGAATATCTCACGTAGAAACATATCTTAGCAGCCTTCTAACTACATTCTGTTTCCTTTGCTATATCTAGCAATTAGCTGGTGTCCACGATGGTTGCACAAGGCTTCACTGTGGATTTAGATAAGCCACTTGTACACCAGGTAAAACTCTACAATCTACATCTTATATTTATTTTCTTCCGTCCTATTTTATTTATTACCTAACTTGGGGGAAGTAAATGGTTTTTTAACTACATTTCTTCTCATATTTATTAAATAATGTTAAAGAATATTTTTAGTCCACCTTATAGTTGGGAGTTGGGACTATATTTAGCCACATTAATATGTTTACTCTTGTCTTATGCTTTCTAGAGGTCTTTTAATCCAATTTGACATATGTATATGCCACTACGAAATATAGAAACTTCTAGTAAGGATTCATATACCATACTCCATGTCCCCAACTAGCTTAGGATTAAGGTGTAGTAATAGTAGTAGTTGTATAGTAATTCATTTGCTCCAATTACGTGACACTCTTTCCATTTGGGGCATTTCAAATTATTCGATGGAGTTCACTGCTAAATATTATTCTCTATGTTATTCTTAAAGTTGCAAGAATTCCAAACTCATTAACTATTTAGCTTTTCAACTCTGATATGATGCTTTCTCTATGAAACTCTCTTTTTGGTTATTACTTCAATATTTTCCTCCACTCTCATTAATATAGTACTGGCCAAATGTGCTCTCAGGTTGGCCACCTTGGAGAAGCTTATCAAGAGTGGGTTCACCAGCCCATTGTCAGCAAGGAAGGTCCTCGATTTTTTGCTAGTGACTTTTGGGAGGTATAGTTACTGTTAGAATTATTCATTTTTTCATTTTCCATACGTGTCTATGTAAGACAAGATTGATATAAAACTTGCTAGATTGTGTCCCATACAAATACCCCACCCCACGTGAAATAATTCATTTTCACATCATCTGACTATGTACATAAGATATTGATACCTTTAATTTGTGAAACAGTTTCTGACTCGCACAGTTTGGTGGGCAATTCCTACCATATGGCTTCCAGTTGTGTGCTATAGCATCTCTGTTTCTATCCGTATGGGTCGTACTGTTCCAGAGGTGGCACTGTTGGTGGTTTTTGGCATTTTCATCTGGACACTGATGGAATACACTCTTCATCGTTTTCTTTTCCATATCAATACAACGAGCTATTGGTTAGTGCTCTCCCTGTTCTTTTAGTAACCTGAGAAGGGAATGTTCTTCTAGCCCTCTGCTTCAGGTTCTTTATTCCTGTGTGCTTAAACTGATCTTTTGTTACAGGGGAAACACAATTCATTATCTTCTTCATGGCTGTCATCATAAGCATCCCATGGATGGTCTACGGCTGGTTTTTCCTCCTGCTGCAACGGCTATTCTCCTCGTACCAGTACGTGAGATTTAATATCTTAGCATTGTTTTATATTTTATCCTGAGAACCTTGTTTGTTTTTTGATTTTTTGTAATTTCACACAAATCTAGAAGATCCCAATTTCAAATGGTTAAAACCGCTTTTCGTGAAATAAAAGATAATTACTCTCTCCATTCGTCAATTGTTGCTACATATGGTTTTCGGAGGTCAAGCAATGCATTGGCAAGGCCATTTCATCTGCCTAATTATTGAAGAGAAACACTAAAAAGAATTAAGCACTTGGAGGGTATACATCAGATATTACATGAAAATCCACTTGACAAATTCTAGTTTAATTTTGGAAGAGTCTACATGGCCGTAGCAACTAAAGGGATATAATACTAGTCTACATCAACAGCTAGTCAAAGTTGGTAGTTTCTATACAAAATGTTGCAAGTTGAAAATCATAGGCTCTTATTATTTGCTTTCCCCAAATGACATTGATCACGACTACACTTATGCTGAATTTTGGGGGTGTGCTGAAGAGCAATGATTATTTGCTTTTGATACTGTACTTTGTAATTGCAGTTCTGGAACTTGATCAAATTGCTGGCAACTCCCACTACTGCTCCTGCTTTGTTTGGAGGCGGTTTATTGGGCTATGTTATGTATGATGTAACCCACTACTACTTGCATCACGGGCAACCAACAGTTGAAGTGCCTAAAAATCTCAAGGTAAGAGGATATGTTTGTTAACATCTCCCCAACGGCTTCATTGTGGTTTTTCAGAGAGTTTTTGGTGATGTCTCCTGTCAGGTGTAATAATGTGTTTGAGAAGATATTTTTTAGACCCTGCTGGTTTCTTTGTTTTAACCTTTTCAACTACTAACAGGAGAATCGTTATACCATTGCAAATTATGTTTTCACTTGTGGTACTTGAGAGTAGAAACTGTTGTTTCAGGTTATAGTTTGTGGTTCAATCCTGTCTTAACGGTAATTAAGAAGTGTCTGCCTGGGGTTTATCGTGGGTTAGGGTTGTGTTGAAGTGATATTTTCATCTCAATTTATGAATCTCGATAAGATGCAGTGTTCAACCTGTTCTATGATCTAACAAGTGATCTTTTGCCCTTCTTTCACAGAAATATCACTTGAATCATCATTTTCGTATCCAGAACAAAGGTTTTGGTATCACCTCTTCCTTCTGGGACAAAGTGTTTGGAACTCTACCACATT</genome_strand>
        <mrna_strand>CCCGTCAGTAGAGTGTTTTGTGGTCTGCACATAGAGAGGGCACCACTTAGGGATCCTTTCAATTGAGCAAAAAAAAATCTGCATTTTTCTAT.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAATTAGCTGGTGTCCACGATGGTTGCACAAGGCTTCACTGTGGATTTAGATAAGCCACTTGTACACCAG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTGGCCACCTTGGAGAAGCTTATCAAGAGTGGGTTCACCAGCCCATTGTCAGCAAGGAAGGTCCTCGATTTTTTGCTAGTGACTTTTGGGAG.....................................................................................................................................................................................TTTCTGACTCGCACAGTTTGGTGGGCAATTCCTACCATATGGCTTCCAGTTGTGTGCTATAGCATCTCTGTTTCTATCCGTATGGGTCGTACTGTTCCAGAGGTGGCACTGTTGGTGGTTTTTGGCATTTTCATCTGGACACTGATGGAATACACTCTTCATCGTTTTCTTTTCCATATCAATACAACGAGCTATTG..........................................................................................................GGGAAACACAATTCATTATCTTCTTCATGGCTGTCATCATAAGCATCCCATGGATGGTCTACGGCTGGTTTTTCCTCCTGCTGCAACGGCTATTCTCCTCGTACCA.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTCTGGAACTTGATCAAATTGCTGGCAACTCCCACTACTGCTCCTGCTTTGTTTGGAGGCGGTTTATTGGGCTATGTTATGTATGATGTAACCCACTACTACTTGCATCACGGGCAACCAACAGTTGAAGTGCCTAAAAATCTCAAG....................................................................................................................................................................................................................................................................................................................................................................................................................AAATATCACTTGAATCATCATTTTCGTATCCAGAACAAAGGTTTTGGTATCACCTCTTCCTTCTGGGACAAAGTGTTTGGAACTCTACCACATT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0018B07-nGyJi/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E342918" ref_strand="+" ref_description="SGN-E342918 [cTOF-11-C8]">
      <seq>gccagcagtagagtgttttgtggtctgcacatagagagggcaccacttagggatcctttcaattgagcaaaaaaaatctgcatttttctatcaattagctggtgtccacgatggttgcacaaggcttcactgtggatttagataagccacttgtacaccaggttggccaccttggagaagcttatcaagagtgggttcaccagcccattgtcagcaaggaaggtcctcgattttttgctagtgacttttgggagtttctgactcgcacagtttggtgggcaattcctaccatatggcttccagttgtgtgctatagcatctctgtttctatccgtatgggtcgtactgttccagaggtggcactgttggtggtttttggcattttcatctggacactgatggaatacactcttcatcgttttcttttccatatcaatacaacgagctattggggaaacacaattcattatcttcttcatggctgtcatcataagcatcccatggatggtctacggctggtttttcctcctgctgcaacggctattctcctcgtaccattctggaacttgatcaaattgctggcaactcccactactgctcctgctttgtttggaggcggtttattgggctatgttatgtatgatgtaacccactactacttgcatcacgggcaaccaacagttgaagtgcctaaaaatctcaagaaatatcacttgaatcatc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0018B07-nGyJi/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02SLe0018B07.1" temp_strand="+" temp_description="C02SLe0018B07.1  AC215448.2 htgs_phase:3 submitted_to_sgn_as:C02SLe0018B07 sequenced_by:kribb upload_account_name:korea">
        <position start="60189" stop="64888"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="60489" g_stop="60580" g_length="92"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="91" r_length="91" r_score="0.989"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="60581" i_stop="62129" i_length="1549">
            <donor d_prob="0.859" d_score="0.98"/>
            <acceptor a_prob="0.702" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="62130" g_stop="62199" g_length="70"/>
          <reference_exon_boundary r_type="cDNA" r_start="92" r_stop="161" r_length="70" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="62200" i_stop="62786" i_length="587">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.979" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="62787" g_stop="62879" g_length="93"/>
          <reference_exon_boundary r_type="cDNA" r_start="162" r_stop="254" r_length="93" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="62880" i_stop="63060" i_length="181">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.882" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="63061" g_stop="63257" g_length="197"/>
          <reference_exon_boundary r_type="cDNA" r_start="255" r_stop="451" r_length="197" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="63258" i_stop="63363" i_length="106">
            <donor d_prob="0.781" d_score="1.00"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="63364" g_stop="63469" g_length="106"/>
          <reference_exon_boundary r_type="cDNA" r_start="452" r_stop="557" r_length="106" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="63470" i_stop="64018" i_length="549">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.992" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="64019" g_stop="64165" g_length="147"/>
          <reference_exon_boundary r_type="cDNA" r_start="558" r_stop="704" r_length="147" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="64166" i_stop="64569" i_length="404">
            <donor d_prob="0.991" d_score="1.00"/>
            <acceptor a_prob="0.619" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="64570" g_stop="64588" g_length="19"/>
          <reference_exon_boundary r_type="cDNA" r_start="705" r_stop="723" r_length="19" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLe0018B07.1" gen_strand="+" ref_id="SGN-E342918" ref_strand="+">
        <total_alignment_score>0.999</total_alignment_score>
        <cumulative_length_of_scored_exons>724</cumulative_length_of_scored_exons>
        <coverage percentage="1.001" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0018B07.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E342918" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="60489" e_stop="60580"/>
          <exon e_start="62130" e_stop="62199"/>
          <exon e_start="62787" e_stop="62879"/>
          <exon e_start="63061" e_stop="63257"/>
          <exon e_start="63364" e_stop="63469"/>
          <exon e_start="64019" e_stop="64165"/>
          <exon e_start="64570" e_stop="64588"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCCAGCAGTAGAGTGTTTTGTGGTCTGCACATAGAGAGGGCACCACTTAGGGATCCTTTCAATTGAGCAAAAAAAAATCTGCATTTTTCTATGTAAGTATCTTCTTGATTCTCTTTGTTATGGTTGGGTTTTGGCCATTTGTGAAATAGATCTCTGTTGTTAGAGTATTTGGGGTTTTGAGATTTATGGTTTTTTAATGTCTGGTGGTGTGAATGTACAAAAAAAATTGAATCTTTACATGTAAATTGAATTATTGAAGTTCATATATGTAAATTGAATCTGAGGTGTGAGGTCTGCATACACTATGTACCCTCCCTAGACCCTACTTGTGGGATTTCAATGGGTATGTTGTTGTTGTTGTATATTTGTTAATTGAATTGTTGAAGTTCTTTATGTATCTACAAGGGTTTTGATGTTCTTTATGTATCTTTACATGTATATTGAATTATTGAAGTTCATATATGTAAATTGAATCTGAGGTGTAAGGTCTGCATACAATATGAACCCTCCTTAGACCCTAATTGTGGGATTTCAATGGGTATGTTGTTGTTGTATATTTGTAAATTGAATTGTTGAAGTTCTTTATGTATTTACAAGGGTTTCGATGTAATTCATGATGTTTACTTGAAGAATTAAAGGCTTATAGATGTCATGACTGATCCAAGTATATGATTTTAAGCAAGTTGCTTTTGTGTATTTTATGCATTGGGGCTTTAATATTATCAAATCTACGGTGTGATTTAACTAATCGATTACGTTTTGTGTCTTGTTATTCTTTCTTTTTTGGGTCAAAGAACATAAAAAGATAATCTGAAGGTGATTTGAGAATGTATGAATTTCTCTGCCTGTAAAAATGATAATTGATACATTCATTTCATGTTTGTAAAGGAGATCATTTTCAAGTATTTTTTTTCTGCCAATCTGCTAAGACTGATATACTGAAAAATTGATGCATTCTTCTATAAACTGAATGTTATGAAAATCGATAGCTTGTGTGCTTGAGGGCAAAATTTTAAATATTCGAGCCTGAGTTGATACTTTCTGCAATCTCTTTTCTTGCTTGTTTATTTACAATTTATGGTTACTGTGAAGCTCTTACTGTTGTTTCATTTGAATGAGAGTAAAATAATGATATATGGACTCATCGCTTCTTTTTTTCTTGATTTTTGCAATTTCATTTGACATCATATATAAGTTATTTGATGTTTGCTTGATCAAATACTCTTGTCTCATATAAAAAAGGAAATGTGCATTGCACAGTTTACCAAAAGTTACCTTGAAAATAGTTGCAATTAAGTAGGCCAAGCTATATTTGGTTGAGTTAGTAGTTCTCCAGGAGCACCCTGAAGTAAATATAACATGAAATCTTGTCTGGACTCAATCGTGGAGCTACTTAATTAGCTTAAATGCCCAAAGAGATGGAATAACTCACCAAGCGCCAAGATGTGTTAACGAGTAAATTTTTTAAAGATAAAATCATCAAATAGGACCTTGTGGATGGCTATATGATCTGTCTTCTATTTTCTTTATTGGAACTGTTCTCATCTCAATAGGTGCTCTTGAACTTCTTATTGAATATCTCACGTAGAAACATATCTTAGCAGCCTTCTAACTACATTCTGTTTCCTTTGCTATATCTAGCAATTAGCTGGTGTCCACGATGGTTGCACAAGGCTTCACTGTGGATTTAGATAAGCCACTTGTACACCAGGTAAAACTCTACAATCTACATCTTATATTTATTTTCTTCCGTCCTATTTTATTTATTACCTAACTTGGGGGAAGTAAATGGTTTTTTAACTACATTTCTTCTCATATTTATTAAATAATGTTAAAGAATATTTTTAGTCCACCTTATAGTTGGGAGTTGGGACTATATTTAGCCACATTAATATGTTTACTCTTGTCTTATGCTTTCTAGAGGTCTTTTAATCCAATTTGACATATGTATATGCCACTACGAAATATAGAAACTTCTAGTAAGGATTCATATACCATACTCCATGTCCCCAACTAGCTTAGGATTAAGGTGTAGTAATAGTAGTAGTTGTATAGTAATTCATTTGCTCCAATTACGTGACACTCTTTCCATTTGGGGCATTTCAAATTATTCGATGGAGTTCACTGCTAAATATTATTCTCTATGTTATTCTTAAAGTTGCAAGAATTCCAAACTCATTAACTATTTAGCTTTTCAACTCTGATATGATGCTTTCTCTATGAAACTCTCTTTTTGGTTATTACTTCAATATTTTCCTCCACTCTCATTAATATAGTACTGGCCAAATGTGCTCTCAGGTTGGCCACCTTGGAGAAGCTTATCAAGAGTGGGTTCACCAGCCCATTGTCAGCAAGGAAGGTCCTCGATTTTTTGCTAGTGACTTTTGGGAGGTATAGTTACTGTTAGAATTATTCATTTTTTCATTTTCCATACGTGTCTATGTAAGACAAGATTGATATAAAACTTGCTAGATTGTGTCCCATACAAATACCCCACCCCACGTGAAATAATTCATTTTCACATCATCTGACTATGTACATAAGATATTGATACCTTTAATTTGTGAAACAGTTTCTGACTCGCACAGTTTGGTGGGCAATTCCTACCATATGGCTTCCAGTTGTGTGCTATAGCATCTCTGTTTCTATCCGTATGGGTCGTACTGTTCCAGAGGTGGCACTGTTGGTGGTTTTTGGCATTTTCATCTGGACACTGATGGAATACACTCTTCATCGTTTTCTTTTCCATATCAATACAACGAGCTATTGGTTAGTGCTCTCCCTGTTCTTTTAGTAACCTGAGAAGGGAATGTTCTTCTAGCCCTCTGCTTCAGGTTCTTTATTCCTGTGTGCTTAAACTGATCTTTTGTTACAGGGGAAACACAATTCATTATCTTCTTCATGGCTGTCATCATAAGCATCCCATGGATGGTCTACGGCTGGTTTTTCCTCCTGCTGCAACGGCTATTCTCCTCGTACCAGTACGTGAGATTTAATATCTTAGCATTGTTTTATATTTTATCCTGAGAACCTTGTTTGTTTTTTGATTTTTTGTAATTTCACACAAATCTAGAAGATCCCAATTTCAAATGGTTAAAACCGCTTTTCGTGAAATAAAAGATAATTACTCTCTCCATTCGTCAATTGTTGCTACATATGGTTTTCGGAGGTCAAGCAATGCATTGGCAAGGCCATTTCATCTGCCTAATTATTGAAGAGAAACACTAAAAAGAATTAAGCACTTGGAGGGTATACATCAGATATTACATGAAAATCCACTTGACAAATTCTAGTTTAATTTTGGAAGAGTCTACATGGCCGTAGCAACTAAAGGGATATAATACTAGTCTACATCAACAGCTAGTCAAAGTTGGTAGTTTCTATACAAAATGTTGCAAGTTGAAAATCATAGGCTCTTATTATTTGCTTTCCCCAAATGACATTGATCACGACTACACTTATGCTGAATTTTGGGGGTGTGCTGAAGAGCAATGATTATTTGCTTTTGATACTGTACTTTGTAATTGCAGTTCTGGAACTTGATCAAATTGCTGGCAACTCCCACTACTGCTCCTGCTTTGTTTGGAGGCGGTTTATTGGGCTATGTTATGTATGATGTAACCCACTACTACTTGCATCACGGGCAACCAACAGTTGAAGTGCCTAAAAATCTCAAGGTAAGAGGATATGTTTGTTAACATCTCCCCAACGGCTTCATTGTGGTTTTTCAGAGAGTTTTTGGTGATGTCTCCTGTCAGGTGTAATAATGTGTTTGAGAAGATATTTTTTAGACCCTGCTGGTTTCTTTGTTTTAACCTTTTCAACTACTAACAGGAGAATCGTTATACCATTGCAAATTATGTTTTCACTTGTGGTACTTGAGAGTAGAAACTGTTGTTTCAGGTTATAGTTTGTGGTTCAATCCTGTCTTAACGGTAATTAAGAAGTGTCTGCCTGGGGTTTATCGTGGGTTAGGGTTGTGTTGAAGTGATATTTTCATCTCAATTTATGAATCTCGATAAGATGCAGTGTTCAACCTGTTCTATGATCTAACAAGTGATCTTTTGCCCTTCTTTCACAGAAATATCACTTGAATCATC</genome_strand>
        <mrna_strand>GCCAGCAGTAGAGTGTTTTGTGGTCTGCACATAGAGAGGGCACCACTTAGGGATCCTTTCAATTGAGCAAA-AAAAATCTGCATTTTTCTAT.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAATTAGCTGGTGTCCACGATGGTTGCACAAGGCTTCACTGTGGATTTAGATAAGCCACTTGTACACCAG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTGGCCACCTTGGAGAAGCTTATCAAGAGTGGGTTCACCAGCCCATTGTCAGCAAGGAAGGTCCTCGATTTTTTGCTAGTGACTTTTGGGAG.....................................................................................................................................................................................TTTCTGACTCGCACAGTTTGGTGGGCAATTCCTACCATATGGCTTCCAGTTGTGTGCTATAGCATCTCTGTTTCTATCCGTATGGGTCGTACTGTTCCAGAGGTGGCACTGTTGGTGGTTTTTGGCATTTTCATCTGGACACTGATGGAATACACTCTTCATCGTTTTCTTTTCCATATCAATACAACGAGCTATTG..........................................................................................................GGGAAACACAATTCATTATCTTCTTCATGGCTGTCATCATAAGCATCCCATGGATGGTCTACGGCTGGTTTTTCCTCCTGCTGCAACGGCTATTCTCCTCGTACCA.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTCTGGAACTTGATCAAATTGCTGGCAACTCCCACTACTGCTCCTGCTTTGTTTGGAGGCGGTTTATTGGGCTATGTTATGTATGATGTAACCCACTACTACTTGCATCACGGGCAACCAACAGTTGAAGTGCCTAAAAATCTCAAG....................................................................................................................................................................................................................................................................................................................................................................................................................AAATATCACTTGAATCATC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0018B07-nGyJi/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E710371" ref_strand="+" ref_description="SGN-E710371 [FA55AH09]">
      <seq>ccattagtagagtgttttgtggtctgcacatagagagggcaccacttaaagatcctttcaattgagcaaaaaaaaatctgcatttttctatcaattagctggtgtccacgatggttgcacaaggcttcactgtggatttagataagccacttgtacaccaggttggccaccttggagaagcttatcaagagtgggttcaccagcccattgtcagcaaggaaggtcctcgattttttgctagtgacttttgggagtttctgactcgcacagtttggtgggcaattcctaccatatggcttccagttgtgtgctatagcatctctgtttctatccgtatgggtcgtactgttccaaaggtggcactgttggtggtttttggcattttcatctggacactgatggaatacactcttcatcgttttcttttccatatcaatacaacgagctattggggaaacacaattcattatcttcttcatggctgtcatcataagcatcccatggatggtctacggctggtttttcctcctgctgcaacggctattctcctcgtaccattctggaacttgatcaaattgctggcaactcccactactgctcctgctttgtttggaggcggtttattgggctatgttatgtatgatgtaacccactactacttgcatcacgggcaaccaacagttgaagtgcctaaaaatctcaagaaatatcacttgaatcatcattttc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0018B07-nGyJi/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02SLe0018B07.1" temp_strand="+" temp_description="C02SLe0018B07.1  AC215448.2 htgs_phase:3 submitted_to_sgn_as:C02SLe0018B07 sequenced_by:kribb upload_account_name:korea">
        <position start="60190" stop="64894"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="60490" g_stop="60580" g_length="91"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="91" r_length="91" r_score="0.956"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="60581" i_stop="62129" i_length="1549">
            <donor d_prob="0.859" d_score="0.96"/>
            <acceptor a_prob="0.702" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="62130" g_stop="62199" g_length="70"/>
          <reference_exon_boundary r_type="cDNA" r_start="92" r_stop="161" r_length="70" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="62200" i_stop="62786" i_length="587">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.979" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="62787" g_stop="62879" g_length="93"/>
          <reference_exon_boundary r_type="cDNA" r_start="162" r_stop="254" r_length="93" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="62880" i_stop="63060" i_length="181">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.882" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="63061" g_stop="63257" g_length="197"/>
          <reference_exon_boundary r_type="cDNA" r_start="255" r_stop="451" r_length="197" r_score="0.995"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="63258" i_stop="63363" i_length="106">
            <donor d_prob="0.781" d_score="1.00"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="63364" g_stop="63469" g_length="106"/>
          <reference_exon_boundary r_type="cDNA" r_start="452" r_stop="557" r_length="106" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="63470" i_stop="64018" i_length="549">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.992" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="64019" g_stop="64165" g_length="147"/>
          <reference_exon_boundary r_type="cDNA" r_start="558" r_stop="704" r_length="147" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="64166" i_stop="64569" i_length="404">
            <donor d_prob="0.991" d_score="1.00"/>
            <acceptor a_prob="0.619" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="64570" g_stop="64594" g_length="25"/>
          <reference_exon_boundary r_type="cDNA" r_start="705" r_stop="729" r_length="25" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLe0018B07.1" gen_strand="+" ref_id="SGN-E710371" ref_strand="+">
        <total_alignment_score>0.993</total_alignment_score>
        <cumulative_length_of_scored_exons>729</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0018B07.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E710371" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="60490" e_stop="60580"/>
          <exon e_start="62130" e_stop="62199"/>
          <exon e_start="62787" e_stop="62879"/>
          <exon e_start="63061" e_stop="63257"/>
          <exon e_start="63364" e_stop="63469"/>
          <exon e_start="64019" e_stop="64165"/>
          <exon e_start="64570" e_stop="64594"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCAGCAGTAGAGTGTTTTGTGGTCTGCACATAGAGAGGGCACCACTTAGGGATCCTTTCAATTGAGCAAAAAAAAATCTGCATTTTTCTATGTAAGTATCTTCTTGATTCTCTTTGTTATGGTTGGGTTTTGGCCATTTGTGAAATAGATCTCTGTTGTTAGAGTATTTGGGGTTTTGAGATTTATGGTTTTTTAATGTCTGGTGGTGTGAATGTACAAAAAAAATTGAATCTTTACATGTAAATTGAATTATTGAAGTTCATATATGTAAATTGAATCTGAGGTGTGAGGTCTGCATACACTATGTACCCTCCCTAGACCCTACTTGTGGGATTTCAATGGGTATGTTGTTGTTGTTGTATATTTGTTAATTGAATTGTTGAAGTTCTTTATGTATCTACAAGGGTTTTGATGTTCTTTATGTATCTTTACATGTATATTGAATTATTGAAGTTCATATATGTAAATTGAATCTGAGGTGTAAGGTCTGCATACAATATGAACCCTCCTTAGACCCTAATTGTGGGATTTCAATGGGTATGTTGTTGTTGTATATTTGTAAATTGAATTGTTGAAGTTCTTTATGTATTTACAAGGGTTTCGATGTAATTCATGATGTTTACTTGAAGAATTAAAGGCTTATAGATGTCATGACTGATCCAAGTATATGATTTTAAGCAAGTTGCTTTTGTGTATTTTATGCATTGGGGCTTTAATATTATCAAATCTACGGTGTGATTTAACTAATCGATTACGTTTTGTGTCTTGTTATTCTTTCTTTTTTGGGTCAAAGAACATAAAAAGATAATCTGAAGGTGATTTGAGAATGTATGAATTTCTCTGCCTGTAAAAATGATAATTGATACATTCATTTCATGTTTGTAAAGGAGATCATTTTCAAGTATTTTTTTTCTGCCAATCTGCTAAGACTGATATACTGAAAAATTGATGCATTCTTCTATAAACTGAATGTTATGAAAATCGATAGCTTGTGTGCTTGAGGGCAAAATTTTAAATATTCGAGCCTGAGTTGATACTTTCTGCAATCTCTTTTCTTGCTTGTTTATTTACAATTTATGGTTACTGTGAAGCTCTTACTGTTGTTTCATTTGAATGAGAGTAAAATAATGATATATGGACTCATCGCTTCTTTTTTTCTTGATTTTTGCAATTTCATTTGACATCATATATAAGTTATTTGATGTTTGCTTGATCAAATACTCTTGTCTCATATAAAAAAGGAAATGTGCATTGCACAGTTTACCAAAAGTTACCTTGAAAATAGTTGCAATTAAGTAGGCCAAGCTATATTTGGTTGAGTTAGTAGTTCTCCAGGAGCACCCTGAAGTAAATATAACATGAAATCTTGTCTGGACTCAATCGTGGAGCTACTTAATTAGCTTAAATGCCCAAAGAGATGGAATAACTCACCAAGCGCCAAGATGTGTTAACGAGTAAATTTTTTAAAGATAAAATCATCAAATAGGACCTTGTGGATGGCTATATGATCTGTCTTCTATTTTCTTTATTGGAACTGTTCTCATCTCAATAGGTGCTCTTGAACTTCTTATTGAATATCTCACGTAGAAACATATCTTAGCAGCCTTCTAACTACATTCTGTTTCCTTTGCTATATCTAGCAATTAGCTGGTGTCCACGATGGTTGCACAAGGCTTCACTGTGGATTTAGATAAGCCACTTGTACACCAGGTAAAACTCTACAATCTACATCTTATATTTATTTTCTTCCGTCCTATTTTATTTATTACCTAACTTGGGGGAAGTAAATGGTTTTTTAACTACATTTCTTCTCATATTTATTAAATAATGTTAAAGAATATTTTTAGTCCACCTTATAGTTGGGAGTTGGGACTATATTTAGCCACATTAATATGTTTACTCTTGTCTTATGCTTTCTAGAGGTCTTTTAATCCAATTTGACATATGTATATGCCACTACGAAATATAGAAACTTCTAGTAAGGATTCATATACCATACTCCATGTCCCCAACTAGCTTAGGATTAAGGTGTAGTAATAGTAGTAGTTGTATAGTAATTCATTTGCTCCAATTACGTGACACTCTTTCCATTTGGGGCATTTCAAATTATTCGATGGAGTTCACTGCTAAATATTATTCTCTATGTTATTCTTAAAGTTGCAAGAATTCCAAACTCATTAACTATTTAGCTTTTCAACTCTGATATGATGCTTTCTCTATGAAACTCTCTTTTTGGTTATTACTTCAATATTTTCCTCCACTCTCATTAATATAGTACTGGCCAAATGTGCTCTCAGGTTGGCCACCTTGGAGAAGCTTATCAAGAGTGGGTTCACCAGCCCATTGTCAGCAAGGAAGGTCCTCGATTTTTTGCTAGTGACTTTTGGGAGGTATAGTTACTGTTAGAATTATTCATTTTTTCATTTTCCATACGTGTCTATGTAAGACAAGATTGATATAAAACTTGCTAGATTGTGTCCCATACAAATACCCCACCCCACGTGAAATAATTCATTTTCACATCATCTGACTATGTACATAAGATATTGATACCTTTAATTTGTGAAACAGTTTCTGACTCGCACAGTTTGGTGGGCAATTCCTACCATATGGCTTCCAGTTGTGTGCTATAGCATCTCTGTTTCTATCCGTATGGGTCGTACTGTTCCAGAGGTGGCACTGTTGGTGGTTTTTGGCATTTTCATCTGGACACTGATGGAATACACTCTTCATCGTTTTCTTTTCCATATCAATACAACGAGCTATTGGTTAGTGCTCTCCCTGTTCTTTTAGTAACCTGAGAAGGGAATGTTCTTCTAGCCCTCTGCTTCAGGTTCTTTATTCCTGTGTGCTTAAACTGATCTTTTGTTACAGGGGAAACACAATTCATTATCTTCTTCATGGCTGTCATCATAAGCATCCCATGGATGGTCTACGGCTGGTTTTTCCTCCTGCTGCAACGGCTATTCTCCTCGTACCAGTACGTGAGATTTAATATCTTAGCATTGTTTTATATTTTATCCTGAGAACCTTGTTTGTTTTTTGATTTTTTGTAATTTCACACAAATCTAGAAGATCCCAATTTCAAATGGTTAAAACCGCTTTTCGTGAAATAAAAGATAATTACTCTCTCCATTCGTCAATTGTTGCTACATATGGTTTTCGGAGGTCAAGCAATGCATTGGCAAGGCCATTTCATCTGCCTAATTATTGAAGAGAAACACTAAAAAGAATTAAGCACTTGGAGGGTATACATCAGATATTACATGAAAATCCACTTGACAAATTCTAGTTTAATTTTGGAAGAGTCTACATGGCCGTAGCAACTAAAGGGATATAATACTAGTCTACATCAACAGCTAGTCAAAGTTGGTAGTTTCTATACAAAATGTTGCAAGTTGAAAATCATAGGCTCTTATTATTTGCTTTCCCCAAATGACATTGATCACGACTACACTTATGCTGAATTTTGGGGGTGTGCTGAAGAGCAATGATTATTTGCTTTTGATACTGTACTTTGTAATTGCAGTTCTGGAACTTGATCAAATTGCTGGCAACTCCCACTACTGCTCCTGCTTTGTTTGGAGGCGGTTTATTGGGCTATGTTATGTATGATGTAACCCACTACTACTTGCATCACGGGCAACCAACAGTTGAAGTGCCTAAAAATCTCAAGGTAAGAGGATATGTTTGTTAACATCTCCCCAACGGCTTCATTGTGGTTTTTCAGAGAGTTTTTGGTGATGTCTCCTGTCAGGTGTAATAATGTGTTTGAGAAGATATTTTTTAGACCCTGCTGGTTTCTTTGTTTTAACCTTTTCAACTACTAACAGGAGAATCGTTATACCATTGCAAATTATGTTTTCACTTGTGGTACTTGAGAGTAGAAACTGTTGTTTCAGGTTATAGTTTGTGGTTCAATCCTGTCTTAACGGTAATTAAGAAGTGTCTGCCTGGGGTTTATCGTGGGTTAGGGTTGTGTTGAAGTGATATTTTCATCTCAATTTATGAATCTCGATAAGATGCAGTGTTCAACCTGTTCTATGATCTAACAAGTGATCTTTTGCCCTTCTTTCACAGAAATATCACTTGAATCATCATTTTC</genome_strand>
        <mrna_strand>CCATTAGTAGAGTGTTTTGTGGTCTGCACATAGAGAGGGCACCACTTAAAGATCCTTTCAATTGAGCAAAAAAAAATCTGCATTTTTCTAT.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAATTAGCTGGTGTCCACGATGGTTGCACAAGGCTTCACTGTGGATTTAGATAAGCCACTTGTACACCAG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTGGCCACCTTGGAGAAGCTTATCAAGAGTGGGTTCACCAGCCCATTGTCAGCAAGGAAGGTCCTCGATTTTTTGCTAGTGACTTTTGGGAG.....................................................................................................................................................................................TTTCTGACTCGCACAGTTTGGTGGGCAATTCCTACCATATGGCTTCCAGTTGTGTGCTATAGCATCTCTGTTTCTATCCGTATGGGTCGTACTGTTCCAAAGGTGGCACTGTTGGTGGTTTTTGGCATTTTCATCTGGACACTGATGGAATACACTCTTCATCGTTTTCTTTTCCATATCAATACAACGAGCTATTG..........................................................................................................GGGAAACACAATTCATTATCTTCTTCATGGCTGTCATCATAAGCATCCCATGGATGGTCTACGGCTGGTTTTTCCTCCTGCTGCAACGGCTATTCTCCTCGTACCA.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTCTGGAACTTGATCAAATTGCTGGCAACTCCCACTACTGCTCCTGCTTTGTTTGGAGGCGGTTTATTGGGCTATGTTATGTATGATGTAACCCACTACTACTTGCATCACGGGCAACCAACAGTTGAAGTGCCTAAAAATCTCAAG....................................................................................................................................................................................................................................................................................................................................................................................................................AAATATCACTTGAATCATCATTTTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0018B07-nGyJi/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E277558" ref_strand="+" ref_description="SGN-E277558 [cLER-6-A22]">
      <seq>agtagagtgttttgtggtctgcacatagagagggcaccacttagggatcctttcaattgagcaaaaaaaatctgcatttttctatcaattagctggtgtccacgatggttgcacaaggcttcactgtggatttagataagccacttgtacaccaggttggccaccttggagaagcttatcaagagtgggttcaccagcccattgtcagcaaggaaggtcctcgattttttgctagtgacttttgggagtttctgactcgcacagtttggtgggcaattcctaccatatggcttccagttgtgtgctatagcatctctgtttctatccgtatgggtcgtactgttccagaggtggcactgttggtggtttttggcattttcatctggacactgatggaatacactcttcatcgttttcttttccatatcaatacaacgagctattggggaaacacaattcattatcttcttcatggctgtcatcataagca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0018B07-nGyJi/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02SLe0018B07.1" temp_strand="+" temp_description="C02SLe0018B07.1  AC215448.2 htgs_phase:3 submitted_to_sgn_as:C02SLe0018B07 sequenced_by:kribb upload_account_name:korea">
        <position start="60195" stop="63708"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="60495" g_stop="60580" g_length="86"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="85" r_length="85" r_score="0.988"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="60581" i_stop="62129" i_length="1549">
            <donor d_prob="0.859" d_score="0.98"/>
            <acceptor a_prob="0.702" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="62130" g_stop="62199" g_length="70"/>
          <reference_exon_boundary r_type="cDNA" r_start="86" r_stop="155" r_length="70" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="62200" i_stop="62786" i_length="587">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.979" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="62787" g_stop="62879" g_length="93"/>
          <reference_exon_boundary r_type="cDNA" r_start="156" r_stop="248" r_length="93" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="62880" i_stop="63060" i_length="181">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.882" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="63061" g_stop="63257" g_length="197"/>
          <reference_exon_boundary r_type="cDNA" r_start="249" r_stop="445" r_length="197" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="63258" i_stop="63363" i_length="106">
            <donor d_prob="0.781" d_score="1.00"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="63364" g_stop="63408" g_length="45"/>
          <reference_exon_boundary r_type="cDNA" r_start="446" r_stop="490" r_length="45" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLe0018B07.1" gen_strand="+" ref_id="SGN-E277558" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>491</cumulative_length_of_scored_exons>
        <coverage percentage="1.002" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0018B07.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E277558" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="60495" e_stop="60580"/>
          <exon e_start="62130" e_stop="62199"/>
          <exon e_start="62787" e_stop="62879"/>
          <exon e_start="63061" e_stop="63257"/>
          <exon e_start="63364" e_stop="63408"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGTAGAGTGTTTTGTGGTCTGCACATAGAGAGGGCACCACTTAGGGATCCTTTCAATTGAGCAAAAAAAAATCTGCATTTTTCTATGTAAGTATCTTCTTGATTCTCTTTGTTATGGTTGGGTTTTGGCCATTTGTGAAATAGATCTCTGTTGTTAGAGTATTTGGGGTTTTGAGATTTATGGTTTTTTAATGTCTGGTGGTGTGAATGTACAAAAAAAATTGAATCTTTACATGTAAATTGAATTATTGAAGTTCATATATGTAAATTGAATCTGAGGTGTGAGGTCTGCATACACTATGTACCCTCCCTAGACCCTACTTGTGGGATTTCAATGGGTATGTTGTTGTTGTTGTATATTTGTTAATTGAATTGTTGAAGTTCTTTATGTATCTACAAGGGTTTTGATGTTCTTTATGTATCTTTACATGTATATTGAATTATTGAAGTTCATATATGTAAATTGAATCTGAGGTGTAAGGTCTGCATACAATATGAACCCTCCTTAGACCCTAATTGTGGGATTTCAATGGGTATGTTGTTGTTGTATATTTGTAAATTGAATTGTTGAAGTTCTTTATGTATTTACAAGGGTTTCGATGTAATTCATGATGTTTACTTGAAGAATTAAAGGCTTATAGATGTCATGACTGATCCAAGTATATGATTTTAAGCAAGTTGCTTTTGTGTATTTTATGCATTGGGGCTTTAATATTATCAAATCTACGGTGTGATTTAACTAATCGATTACGTTTTGTGTCTTGTTATTCTTTCTTTTTTGGGTCAAAGAACATAAAAAGATAATCTGAAGGTGATTTGAGAATGTATGAATTTCTCTGCCTGTAAAAATGATAATTGATACATTCATTTCATGTTTGTAAAGGAGATCATTTTCAAGTATTTTTTTTCTGCCAATCTGCTAAGACTGATATACTGAAAAATTGATGCATTCTTCTATAAACTGAATGTTATGAAAATCGATAGCTTGTGTGCTTGAGGGCAAAATTTTAAATATTCGAGCCTGAGTTGATACTTTCTGCAATCTCTTTTCTTGCTTGTTTATTTACAATTTATGGTTACTGTGAAGCTCTTACTGTTGTTTCATTTGAATGAGAGTAAAATAATGATATATGGACTCATCGCTTCTTTTTTTCTTGATTTTTGCAATTTCATTTGACATCATATATAAGTTATTTGATGTTTGCTTGATCAAATACTCTTGTCTCATATAAAAAAGGAAATGTGCATTGCACAGTTTACCAAAAGTTACCTTGAAAATAGTTGCAATTAAGTAGGCCAAGCTATATTTGGTTGAGTTAGTAGTTCTCCAGGAGCACCCTGAAGTAAATATAACATGAAATCTTGTCTGGACTCAATCGTGGAGCTACTTAATTAGCTTAAATGCCCAAAGAGATGGAATAACTCACCAAGCGCCAAGATGTGTTAACGAGTAAATTTTTTAAAGATAAAATCATCAAATAGGACCTTGTGGATGGCTATATGATCTGTCTTCTATTTTCTTTATTGGAACTGTTCTCATCTCAATAGGTGCTCTTGAACTTCTTATTGAATATCTCACGTAGAAACATATCTTAGCAGCCTTCTAACTACATTCTGTTTCCTTTGCTATATCTAGCAATTAGCTGGTGTCCACGATGGTTGCACAAGGCTTCACTGTGGATTTAGATAAGCCACTTGTACACCAGGTAAAACTCTACAATCTACATCTTATATTTATTTTCTTCCGTCCTATTTTATTTATTACCTAACTTGGGGGAAGTAAATGGTTTTTTAACTACATTTCTTCTCATATTTATTAAATAATGTTAAAGAATATTTTTAGTCCACCTTATAGTTGGGAGTTGGGACTATATTTAGCCACATTAATATGTTTACTCTTGTCTTATGCTTTCTAGAGGTCTTTTAATCCAATTTGACATATGTATATGCCACTACGAAATATAGAAACTTCTAGTAAGGATTCATATACCATACTCCATGTCCCCAACTAGCTTAGGATTAAGGTGTAGTAATAGTAGTAGTTGTATAGTAATTCATTTGCTCCAATTACGTGACACTCTTTCCATTTGGGGCATTTCAAATTATTCGATGGAGTTCACTGCTAAATATTATTCTCTATGTTATTCTTAAAGTTGCAAGAATTCCAAACTCATTAACTATTTAGCTTTTCAACTCTGATATGATGCTTTCTCTATGAAACTCTCTTTTTGGTTATTACTTCAATATTTTCCTCCACTCTCATTAATATAGTACTGGCCAAATGTGCTCTCAGGTTGGCCACCTTGGAGAAGCTTATCAAGAGTGGGTTCACCAGCCCATTGTCAGCAAGGAAGGTCCTCGATTTTTTGCTAGTGACTTTTGGGAGGTATAGTTACTGTTAGAATTATTCATTTTTTCATTTTCCATACGTGTCTATGTAAGACAAGATTGATATAAAACTTGCTAGATTGTGTCCCATACAAATACCCCACCCCACGTGAAATAATTCATTTTCACATCATCTGACTATGTACATAAGATATTGATACCTTTAATTTGTGAAACAGTTTCTGACTCGCACAGTTTGGTGGGCAATTCCTACCATATGGCTTCCAGTTGTGTGCTATAGCATCTCTGTTTCTATCCGTATGGGTCGTACTGTTCCAGAGGTGGCACTGTTGGTGGTTTTTGGCATTTTCATCTGGACACTGATGGAATACACTCTTCATCGTTTTCTTTTCCATATCAATACAACGAGCTATTGGTTAGTGCTCTCCCTGTTCTTTTAGTAACCTGAGAAGGGAATGTTCTTCTAGCCCTCTGCTTCAGGTTCTTTATTCCTGTGTGCTTAAACTGATCTTTTGTTACAGGGGAAACACAATTCATTATCTTCTTCATGGCTGTCATCATAAGCA</genome_strand>
        <mrna_strand>AGTAGAGTGTTTTGTGGTCTGCACATAGAGAGGGCACCACTTAGGGATCCTTTCAATTGAGCAAAAAAAA-TCTGCATTTTTCTAT.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAATTAGCTGGTGTCCACGATGGTTGCACAAGGCTTCACTGTGGATTTAGATAAGCCACTTGTACACCAG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTGGCCACCTTGGAGAAGCTTATCAAGAGTGGGTTCACCAGCCCATTGTCAGCAAGGAAGGTCCTCGATTTTTTGCTAGTGACTTTTGGGAG.....................................................................................................................................................................................TTTCTGACTCGCACAGTTTGGTGGGCAATTCCTACCATATGGCTTCCAGTTGTGTGCTATAGCATCTCTGTTTCTATCCGTATGGGTCGTACTGTTCCAGAGGTGGCACTGTTGGTGGTTTTTGGCATTTTCATCTGGACACTGATGGAATACACTCTTCATCGTTTTCTTTTCCATATCAATACAACGAGCTATTG..........................................................................................................GGGAAACACAATTCATTATCTTCTTCATGGCTGTCATCATAAGCA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0018B07-nGyJi/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E267028" ref_strand="+" ref_description="SGN-E267028 [cLEI-4-G1]">
      <seq>gagttttgtggtctgcacatagagagggcaccacttagggatcctttcaattgagcaaaaaaaatctgcatttttctatcaattagctggtgtccacgatggttgcacaaggcttcactgtggatttagataagccacttgtacaccaggttggccaccttggagaagcttatcaagagtgggttcaccagcccattgtcagcaaggaaggtcctcgattttttgctagtgacttttgggagtttctgactcgcacagtttggtgggcaattcctaccatatggcttccagttgtgtgctatagcatctctgtttctatccgtatgggtcgtactgttccagaggtggcactgttggtggtttttggcattttcatctggacactgatggaatacactcttcatcgttttcttttccatatcaatacaacgagctattggggaaacacaattcattatcttcttcatggctgtcatcataagcatcccatggatggtcta</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0018B07-nGyJi/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02SLe0018B07.1" temp_strand="+" temp_description="C02SLe0018B07.1  AC215448.2 htgs_phase:3 submitted_to_sgn_as:C02SLe0018B07 sequenced_by:kribb upload_account_name:korea">
        <position start="60201" stop="63724"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="60501" g_stop="60580" g_length="80"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="79" r_length="79" r_score="0.975"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="60581" i_stop="62129" i_length="1549">
            <donor d_prob="0.859" d_score="0.98"/>
            <acceptor a_prob="0.702" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="62130" g_stop="62199" g_length="70"/>
          <reference_exon_boundary r_type="cDNA" r_start="80" r_stop="149" r_length="70" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="62200" i_stop="62786" i_length="587">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.979" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="62787" g_stop="62879" g_length="93"/>
          <reference_exon_boundary r_type="cDNA" r_start="150" r_stop="242" r_length="93" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="62880" i_stop="63060" i_length="181">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.882" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="63061" g_stop="63257" g_length="197"/>
          <reference_exon_boundary r_type="cDNA" r_start="243" r_stop="439" r_length="197" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="63258" i_stop="63363" i_length="106">
            <donor d_prob="0.781" d_score="1.00"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="63364" g_stop="63424" g_length="61"/>
          <reference_exon_boundary r_type="cDNA" r_start="440" r_stop="500" r_length="61" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLe0018B07.1" gen_strand="+" ref_id="SGN-E267028" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>501</cumulative_length_of_scored_exons>
        <coverage percentage="1.002" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0018B07.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E267028" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="60501" e_stop="60580"/>
          <exon e_start="62130" e_stop="62199"/>
          <exon e_start="62787" e_stop="62879"/>
          <exon e_start="63061" e_stop="63257"/>
          <exon e_start="63364" e_stop="63424"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTGTTTTGTGGTCTGCACATAGAGAGGGCACCACTTAGGGATCCTTTCAATTGAGCAAAAAAAAATCTGCATTTTTCTATGTAAGTATCTTCTTGATTCTCTTTGTTATGGTTGGGTTTTGGCCATTTGTGAAATAGATCTCTGTTGTTAGAGTATTTGGGGTTTTGAGATTTATGGTTTTTTAATGTCTGGTGGTGTGAATGTACAAAAAAAATTGAATCTTTACATGTAAATTGAATTATTGAAGTTCATATATGTAAATTGAATCTGAGGTGTGAGGTCTGCATACACTATGTACCCTCCCTAGACCCTACTTGTGGGATTTCAATGGGTATGTTGTTGTTGTTGTATATTTGTTAATTGAATTGTTGAAGTTCTTTATGTATCTACAAGGGTTTTGATGTTCTTTATGTATCTTTACATGTATATTGAATTATTGAAGTTCATATATGTAAATTGAATCTGAGGTGTAAGGTCTGCATACAATATGAACCCTCCTTAGACCCTAATTGTGGGATTTCAATGGGTATGTTGTTGTTGTATATTTGTAAATTGAATTGTTGAAGTTCTTTATGTATTTACAAGGGTTTCGATGTAATTCATGATGTTTACTTGAAGAATTAAAGGCTTATAGATGTCATGACTGATCCAAGTATATGATTTTAAGCAAGTTGCTTTTGTGTATTTTATGCATTGGGGCTTTAATATTATCAAATCTACGGTGTGATTTAACTAATCGATTACGTTTTGTGTCTTGTTATTCTTTCTTTTTTGGGTCAAAGAACATAAAAAGATAATCTGAAGGTGATTTGAGAATGTATGAATTTCTCTGCCTGTAAAAATGATAATTGATACATTCATTTCATGTTTGTAAAGGAGATCATTTTCAAGTATTTTTTTTCTGCCAATCTGCTAAGACTGATATACTGAAAAATTGATGCATTCTTCTATAAACTGAATGTTATGAAAATCGATAGCTTGTGTGCTTGAGGGCAAAATTTTAAATATTCGAGCCTGAGTTGATACTTTCTGCAATCTCTTTTCTTGCTTGTTTATTTACAATTTATGGTTACTGTGAAGCTCTTACTGTTGTTTCATTTGAATGAGAGTAAAATAATGATATATGGACTCATCGCTTCTTTTTTTCTTGATTTTTGCAATTTCATTTGACATCATATATAAGTTATTTGATGTTTGCTTGATCAAATACTCTTGTCTCATATAAAAAAGGAAATGTGCATTGCACAGTTTACCAAAAGTTACCTTGAAAATAGTTGCAATTAAGTAGGCCAAGCTATATTTGGTTGAGTTAGTAGTTCTCCAGGAGCACCCTGAAGTAAATATAACATGAAATCTTGTCTGGACTCAATCGTGGAGCTACTTAATTAGCTTAAATGCCCAAAGAGATGGAATAACTCACCAAGCGCCAAGATGTGTTAACGAGTAAATTTTTTAAAGATAAAATCATCAAATAGGACCTTGTGGATGGCTATATGATCTGTCTTCTATTTTCTTTATTGGAACTGTTCTCATCTCAATAGGTGCTCTTGAACTTCTTATTGAATATCTCACGTAGAAACATATCTTAGCAGCCTTCTAACTACATTCTGTTTCCTTTGCTATATCTAGCAATTAGCTGGTGTCCACGATGGTTGCACAAGGCTTCACTGTGGATTTAGATAAGCCACTTGTACACCAGGTAAAACTCTACAATCTACATCTTATATTTATTTTCTTCCGTCCTATTTTATTTATTACCTAACTTGGGGGAAGTAAATGGTTTTTTAACTACATTTCTTCTCATATTTATTAAATAATGTTAAAGAATATTTTTAGTCCACCTTATAGTTGGGAGTTGGGACTATATTTAGCCACATTAATATGTTTACTCTTGTCTTATGCTTTCTAGAGGTCTTTTAATCCAATTTGACATATGTATATGCCACTACGAAATATAGAAACTTCTAGTAAGGATTCATATACCATACTCCATGTCCCCAACTAGCTTAGGATTAAGGTGTAGTAATAGTAGTAGTTGTATAGTAATTCATTTGCTCCAATTACGTGACACTCTTTCCATTTGGGGCATTTCAAATTATTCGATGGAGTTCACTGCTAAATATTATTCTCTATGTTATTCTTAAAGTTGCAAGAATTCCAAACTCATTAACTATTTAGCTTTTCAACTCTGATATGATGCTTTCTCTATGAAACTCTCTTTTTGGTTATTACTTCAATATTTTCCTCCACTCTCATTAATATAGTACTGGCCAAATGTGCTCTCAGGTTGGCCACCTTGGAGAAGCTTATCAAGAGTGGGTTCACCAGCCCATTGTCAGCAAGGAAGGTCCTCGATTTTTTGCTAGTGACTTTTGGGAGGTATAGTTACTGTTAGAATTATTCATTTTTTCATTTTCCATACGTGTCTATGTAAGACAAGATTGATATAAAACTTGCTAGATTGTGTCCCATACAAATACCCCACCCCACGTGAAATAATTCATTTTCACATCATCTGACTATGTACATAAGATATTGATACCTTTAATTTGTGAAACAGTTTCTGACTCGCACAGTTTGGTGGGCAATTCCTACCATATGGCTTCCAGTTGTGTGCTATAGCATCTCTGTTTCTATCCGTATGGGTCGTACTGTTCCAGAGGTGGCACTGTTGGTGGTTTTTGGCATTTTCATCTGGACACTGATGGAATACACTCTTCATCGTTTTCTTTTCCATATCAATACAACGAGCTATTGGTTAGTGCTCTCCCTGTTCTTTTAGTAACCTGAGAAGGGAATGTTCTTCTAGCCCTCTGCTTCAGGTTCTTTATTCCTGTGTGCTTAAACTGATCTTTTGTTACAGGGGAAACACAATTCATTATCTTCTTCATGGCTGTCATCATAAGCATCCCATGGATGGTCTA</genome_strand>
        <mrna_strand>GAGTTTTGTGGTCTGCACATAGAGAGGGCACCACTTAGGGATCCTTTCAATTGAGC-AAAAAAAATCTGCATTTTTCTAT.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAATTAGCTGGTGTCCACGATGGTTGCACAAGGCTTCACTGTGGATTTAGATAAGCCACTTGTACACCAG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTGGCCACCTTGGAGAAGCTTATCAAGAGTGGGTTCACCAGCCCATTGTCAGCAAGGAAGGTCCTCGATTTTTTGCTAGTGACTTTTGGGAG.....................................................................................................................................................................................TTTCTGACTCGCACAGTTTGGTGGGCAATTCCTACCATATGGCTTCCAGTTGTGTGCTATAGCATCTCTGTTTCTATCCGTATGGGTCGTACTGTTCCAGAGGTGGCACTGTTGGTGGTTTTTGGCATTTTCATCTGGACACTGATGGAATACACTCTTCATCGTTTTCTTTTCCATATCAATACAACGAGCTATTG..........................................................................................................GGGAAACACAATTCATTATCTTCTTCATGGCTGTCATCATAAGCATCCCATGGATGGTCTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0018B07-nGyJi/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E319937" ref_strand="+" ref_description="SGN-E319937 [cTOB-12-P22]">
      <seq>tggtctgcacatagagagggcaccacttagggatcctttcaattgagcaaaaaaaatctgcatttttctatcaattagctggtgtccacgatggttgcacaaggcttcactgtggatttagataagccacttgtacaccaggttggccaccttggagaagcttatcaagagtgggttcaccagcccattgtcagcaaggaaggtcctcgattttttgctagtgacttttgggagtttctgactcgcacagtttggtgggcaattcctaccatatggcttccagttgtgtgctatagcatctctgtttctatccgtatgggtcgtactgttccagaggtggcactgttggtggtttttggcattttcatctggacactgatggaatacactcttcatcgttttcttttccatatcaatacaacgagctattggggaaacacaattcattatcttcttcatggctgtcatcataagcatcccatggatggtctacggctggtttttcctcctgctgcaacggctattctcctcgtaccattctggaacttgatcaaattgctggcaactcccactact</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0018B07-nGyJi/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02SLe0018B07.1" temp_strand="+" temp_description="C02SLe0018B07.1  AC215448.2 htgs_phase:3 submitted_to_sgn_as:C02SLe0018B07 sequenced_by:kribb upload_account_name:korea">
        <position start="60209" stop="64357"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="60509" g_stop="60580" g_length="72"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="71" r_length="71" r_score="0.986"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="60581" i_stop="62129" i_length="1549">
            <donor d_prob="0.859" d_score="0.98"/>
            <acceptor a_prob="0.702" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="62130" g_stop="62199" g_length="70"/>
          <reference_exon_boundary r_type="cDNA" r_start="72" r_stop="141" r_length="70" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="62200" i_stop="62786" i_length="587">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.979" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="62787" g_stop="62879" g_length="93"/>
          <reference_exon_boundary r_type="cDNA" r_start="142" r_stop="234" r_length="93" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="62880" i_stop="63060" i_length="181">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.882" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="63061" g_stop="63257" g_length="197"/>
          <reference_exon_boundary r_type="cDNA" r_start="235" r_stop="431" r_length="197" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="63258" i_stop="63363" i_length="106">
            <donor d_prob="0.781" d_score="1.00"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="63364" g_stop="63469" g_length="106"/>
          <reference_exon_boundary r_type="cDNA" r_start="432" r_stop="537" r_length="106" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="63470" i_stop="64018" i_length="549">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.992" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="64019" g_stop="64057" g_length="39"/>
          <reference_exon_boundary r_type="cDNA" r_start="538" r_stop="576" r_length="39" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLe0018B07.1" gen_strand="+" ref_id="SGN-E319937" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>577</cumulative_length_of_scored_exons>
        <coverage percentage="1.002" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0018B07.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E319937" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="60509" e_stop="60580"/>
          <exon e_start="62130" e_stop="62199"/>
          <exon e_start="62787" e_stop="62879"/>
          <exon e_start="63061" e_stop="63257"/>
          <exon e_start="63364" e_stop="63469"/>
          <exon e_start="64019" e_stop="64057"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGGTCTGCACATAGAGAGGGCACCACTTAGGGATCCTTTCAATTGAGCAAAAAAAAATCTGCATTTTTCTATGTAAGTATCTTCTTGATTCTCTTTGTTATGGTTGGGTTTTGGCCATTTGTGAAATAGATCTCTGTTGTTAGAGTATTTGGGGTTTTGAGATTTATGGTTTTTTAATGTCTGGTGGTGTGAATGTACAAAAAAAATTGAATCTTTACATGTAAATTGAATTATTGAAGTTCATATATGTAAATTGAATCTGAGGTGTGAGGTCTGCATACACTATGTACCCTCCCTAGACCCTACTTGTGGGATTTCAATGGGTATGTTGTTGTTGTTGTATATTTGTTAATTGAATTGTTGAAGTTCTTTATGTATCTACAAGGGTTTTGATGTTCTTTATGTATCTTTACATGTATATTGAATTATTGAAGTTCATATATGTAAATTGAATCTGAGGTGTAAGGTCTGCATACAATATGAACCCTCCTTAGACCCTAATTGTGGGATTTCAATGGGTATGTTGTTGTTGTATATTTGTAAATTGAATTGTTGAAGTTCTTTATGTATTTACAAGGGTTTCGATGTAATTCATGATGTTTACTTGAAGAATTAAAGGCTTATAGATGTCATGACTGATCCAAGTATATGATTTTAAGCAAGTTGCTTTTGTGTATTTTATGCATTGGGGCTTTAATATTATCAAATCTACGGTGTGATTTAACTAATCGATTACGTTTTGTGTCTTGTTATTCTTTCTTTTTTGGGTCAAAGAACATAAAAAGATAATCTGAAGGTGATTTGAGAATGTATGAATTTCTCTGCCTGTAAAAATGATAATTGATACATTCATTTCATGTTTGTAAAGGAGATCATTTTCAAGTATTTTTTTTCTGCCAATCTGCTAAGACTGATATACTGAAAAATTGATGCATTCTTCTATAAACTGAATGTTATGAAAATCGATAGCTTGTGTGCTTGAGGGCAAAATTTTAAATATTCGAGCCTGAGTTGATACTTTCTGCAATCTCTTTTCTTGCTTGTTTATTTACAATTTATGGTTACTGTGAAGCTCTTACTGTTGTTTCATTTGAATGAGAGTAAAATAATGATATATGGACTCATCGCTTCTTTTTTTCTTGATTTTTGCAATTTCATTTGACATCATATATAAGTTATTTGATGTTTGCTTGATCAAATACTCTTGTCTCATATAAAAAAGGAAATGTGCATTGCACAGTTTACCAAAAGTTACCTTGAAAATAGTTGCAATTAAGTAGGCCAAGCTATATTTGGTTGAGTTAGTAGTTCTCCAGGAGCACCCTGAAGTAAATATAACATGAAATCTTGTCTGGACTCAATCGTGGAGCTACTTAATTAGCTTAAATGCCCAAAGAGATGGAATAACTCACCAAGCGCCAAGATGTGTTAACGAGTAAATTTTTTAAAGATAAAATCATCAAATAGGACCTTGTGGATGGCTATATGATCTGTCTTCTATTTTCTTTATTGGAACTGTTCTCATCTCAATAGGTGCTCTTGAACTTCTTATTGAATATCTCACGTAGAAACATATCTTAGCAGCCTTCTAACTACATTCTGTTTCCTTTGCTATATCTAGCAATTAGCTGGTGTCCACGATGGTTGCACAAGGCTTCACTGTGGATTTAGATAAGCCACTTGTACACCAGGTAAAACTCTACAATCTACATCTTATATTTATTTTCTTCCGTCCTATTTTATTTATTACCTAACTTGGGGGAAGTAAATGGTTTTTTAACTACATTTCTTCTCATATTTATTAAATAATGTTAAAGAATATTTTTAGTCCACCTTATAGTTGGGAGTTGGGACTATATTTAGCCACATTAATATGTTTACTCTTGTCTTATGCTTTCTAGAGGTCTTTTAATCCAATTTGACATATGTATATGCCACTACGAAATATAGAAACTTCTAGTAAGGATTCATATACCATACTCCATGTCCCCAACTAGCTTAGGATTAAGGTGTAGTAATAGTAGTAGTTGTATAGTAATTCATTTGCTCCAATTACGTGACACTCTTTCCATTTGGGGCATTTCAAATTATTCGATGGAGTTCACTGCTAAATATTATTCTCTATGTTATTCTTAAAGTTGCAAGAATTCCAAACTCATTAACTATTTAGCTTTTCAACTCTGATATGATGCTTTCTCTATGAAACTCTCTTTTTGGTTATTACTTCAATATTTTCCTCCACTCTCATTAATATAGTACTGGCCAAATGTGCTCTCAGGTTGGCCACCTTGGAGAAGCTTATCAAGAGTGGGTTCACCAGCCCATTGTCAGCAAGGAAGGTCCTCGATTTTTTGCTAGTGACTTTTGGGAGGTATAGTTACTGTTAGAATTATTCATTTTTTCATTTTCCATACGTGTCTATGTAAGACAAGATTGATATAAAACTTGCTAGATTGTGTCCCATACAAATACCCCACCCCACGTGAAATAATTCATTTTCACATCATCTGACTATGTACATAAGATATTGATACCTTTAATTTGTGAAACAGTTTCTGACTCGCACAGTTTGGTGGGCAATTCCTACCATATGGCTTCCAGTTGTGTGCTATAGCATCTCTGTTTCTATCCGTATGGGTCGTACTGTTCCAGAGGTGGCACTGTTGGTGGTTTTTGGCATTTTCATCTGGACACTGATGGAATACACTCTTCATCGTTTTCTTTTCCATATCAATACAACGAGCTATTGGTTAGTGCTCTCCCTGTTCTTTTAGTAACCTGAGAAGGGAATGTTCTTCTAGCCCTCTGCTTCAGGTTCTTTATTCCTGTGTGCTTAAACTGATCTTTTGTTACAGGGGAAACACAATTCATTATCTTCTTCATGGCTGTCATCATAAGCATCCCATGGATGGTCTACGGCTGGTTTTTCCTCCTGCTGCAACGGCTATTCTCCTCGTACCAGTACGTGAGATTTAATATCTTAGCATTGTTTTATATTTTATCCTGAGAACCTTGTTTGTTTTTTGATTTTTTGTAATTTCACACAAATCTAGAAGATCCCAATTTCAAATGGTTAAAACCGCTTTTCGTGAAATAAAAGATAATTACTCTCTCCATTCGTCAATTGTTGCTACATATGGTTTTCGGAGGTCAAGCAATGCATTGGCAAGGCCATTTCATCTGCCTAATTATTGAAGAGAAACACTAAAAAGAATTAAGCACTTGGAGGGTATACATCAGATATTACATGAAAATCCACTTGACAAATTCTAGTTTAATTTTGGAAGAGTCTACATGGCCGTAGCAACTAAAGGGATATAATACTAGTCTACATCAACAGCTAGTCAAAGTTGGTAGTTTCTATACAAAATGTTGCAAGTTGAAAATCATAGGCTCTTATTATTTGCTTTCCCCAAATGACATTGATCACGACTACACTTATGCTGAATTTTGGGGGTGTGCTGAAGAGCAATGATTATTTGCTTTTGATACTGTACTTTGTAATTGCAGTTCTGGAACTTGATCAAATTGCTGGCAACTCCCACTACT</genome_strand>
        <mrna_strand>TGGTCTGCACATAGAGAGGGCACCACTTAGGGATCCTTTCAATTGAGC-AAAAAAAATCTGCATTTTTCTAT.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAATTAGCTGGTGTCCACGATGGTTGCACAAGGCTTCACTGTGGATTTAGATAAGCCACTTGTACACCAG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTGGCCACCTTGGAGAAGCTTATCAAGAGTGGGTTCACCAGCCCATTGTCAGCAAGGAAGGTCCTCGATTTTTTGCTAGTGACTTTTGGGAG.....................................................................................................................................................................................TTTCTGACTCGCACAGTTTGGTGGGCAATTCCTACCATATGGCTTCCAGTTGTGTGCTATAGCATCTCTGTTTCTATCCGTATGGGTCGTACTGTTCCAGAGGTGGCACTGTTGGTGGTTTTTGGCATTTTCATCTGGACACTGATGGAATACACTCTTCATCGTTTTCTTTTCCATATCAATACAACGAGCTATTG..........................................................................................................GGGAAACACAATTCATTATCTTCTTCATGGCTGTCATCATAAGCATCCCATGGATGGTCTACGGCTGGTTTTTCCTCCTGCTGCAACGGCTATTCTCCTCGTACCA.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTCTGGAACTTGATCAAATTGCTGGCAACTCCCACTACT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0018B07-nGyJi/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E240677" ref_strand="+" ref_description="SGN-E240677 [cLED-21-E18]">
      <seq>gaagcttatcaagagtgggttcaccagcccattgtcagcaaggaaggtcctcgattttttgctagtgacttttgggagtttctgactcgcacagtttggtgggcaattcctaccatatggcttccagttgtgtgctatagcatctctgtttctatccgtatgggtcgtactgttccagaggtggcactgttggtggtttttggcattttcatctggacactgatggaatacactcttcatcgttttcttttccatatcaatacaacgagctattggggaaacacaattcattatcttcttcatggctgtcatcataagcatcccatggatggtctac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0018B07-nGyJi/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02SLe0018B07.1" temp_strand="+" temp_description="C02SLe0018B07.1  AC215448.2 htgs_phase:3 submitted_to_sgn_as:C02SLe0018B07 sequenced_by:kribb upload_account_name:korea">
        <position start="62502" stop="63725"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="62802" g_stop="62879" g_length="78"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="78" r_length="78" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="62880" i_stop="63060" i_length="181">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.882" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="63061" g_stop="63257" g_length="197"/>
          <reference_exon_boundary r_type="cDNA" r_start="79" r_stop="275" r_length="197" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="63258" i_stop="63363" i_length="106">
            <donor d_prob="0.781" d_score="1.00"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="63364" g_stop="63425" g_length="62"/>
          <reference_exon_boundary r_type="cDNA" r_start="276" r_stop="337" r_length="62" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLe0018B07.1" gen_strand="+" ref_id="SGN-E240677" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>337</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0018B07.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E240677" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="62802" e_stop="62879"/>
          <exon e_start="63061" e_stop="63257"/>
          <exon e_start="63364" e_stop="63425"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAAGCTTATCAAGAGTGGGTTCACCAGCCCATTGTCAGCAAGGAAGGTCCTCGATTTTTTGCTAGTGACTTTTGGGAGGTATAGTTACTGTTAGAATTATTCATTTTTTCATTTTCCATACGTGTCTATGTAAGACAAGATTGATATAAAACTTGCTAGATTGTGTCCCATACAAATACCCCACCCCACGTGAAATAATTCATTTTCACATCATCTGACTATGTACATAAGATATTGATACCTTTAATTTGTGAAACAGTTTCTGACTCGCACAGTTTGGTGGGCAATTCCTACCATATGGCTTCCAGTTGTGTGCTATAGCATCTCTGTTTCTATCCGTATGGGTCGTACTGTTCCAGAGGTGGCACTGTTGGTGGTTTTTGGCATTTTCATCTGGACACTGATGGAATACACTCTTCATCGTTTTCTTTTCCATATCAATACAACGAGCTATTGGTTAGTGCTCTCCCTGTTCTTTTAGTAACCTGAGAAGGGAATGTTCTTCTAGCCCTCTGCTTCAGGTTCTTTATTCCTGTGTGCTTAAACTGATCTTTTGTTACAGGGGAAACACAATTCATTATCTTCTTCATGGCTGTCATCATAAGCATCCCATGGATGGTCTAC</genome_strand>
        <mrna_strand>GAAGCTTATCAAGAGTGGGTTCACCAGCCCATTGTCAGCAAGGAAGGTCCTCGATTTTTTGCTAGTGACTTTTGGGAG.....................................................................................................................................................................................TTTCTGACTCGCACAGTTTGGTGGGCAATTCCTACCATATGGCTTCCAGTTGTGTGCTATAGCATCTCTGTTTCTATCCGTATGGGTCGTACTGTTCCAGAGGTGGCACTGTTGGTGGTTTTTGGCATTTTCATCTGGACACTGATGGAATACACTCTTCATCGTTTTCTTTTCCATATCAATACAACGAGCTATTG..........................................................................................................GGGAAACACAATTCATTATCTTCTTCATGGCTGTCATCATAAGCATCCCATGGATGGTCTAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0018B07-nGyJi/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E703908" ref_strand="+" ref_description="SGN-E703908 [FA22DC06]">
      <seq>caagagtgggttcaccagcccattgtcagcaaggaaggtcctcgattttttgctagtgacttttgggagtttctgactcgcacagtttggtgggcaattcctaccatatggcttccagttgtgtgctatagcatctctgtttctatccgtatgggtcgtactgttccagaggtggcactgttggtggtttttggcattttcatctggacactgatggaatacactcttcatcgttttcttttccatatcaatacaacgagctattggggaaacacaattcattatcttcttcatggctgtcatcataagcatcccatggatggtctacggctggtttttcctcctgctgcaacggctattctcctcgtaccattctggaacttgatcaaattgctggcaactcccactactgctcctgctttgtttggaggcggtttattgggctatgttatgtatgatgtaacccactactacttgcatcacgggcaaccaacagttgaagtgcctaaaaatctcaagaaatatcacttgaatcatcattttcgtatccagaacaaaggttttggtatcacctcttccttctgggacaaagtgtttggaactctaccacattcaaaatcagccaagaacagatgattcccttcggataggagaatcacagcactaagtactttttattagaagggttagaattattatttttttctttgaaatccagttccagtcttttcattttgccactatgttcatgctacagtttaattggaacttggcattccatccttgtgacaacttgtgtaagggttacgtaaccgtgctgcgaaacaattgtgctcatcagtccatctagggtgtatttaattttatcattgggctgtatgttggccattt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0018B07-nGyJi/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02SLe0018B07.1" temp_strand="+" temp_description="C02SLe0018B07.1  AC215448.2 htgs_phase:3 submitted_to_sgn_as:C02SLe0018B07 sequenced_by:kribb upload_account_name:korea">
        <position start="62511" stop="65241"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="62811" g_stop="62879" g_length="69"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="69" r_length="69" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="62880" i_stop="63060" i_length="181">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.882" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="63061" g_stop="63257" g_length="197"/>
          <reference_exon_boundary r_type="cDNA" r_start="70" r_stop="266" r_length="197" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="63258" i_stop="63363" i_length="106">
            <donor d_prob="0.781" d_score="1.00"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="63364" g_stop="63469" g_length="106"/>
          <reference_exon_boundary r_type="cDNA" r_start="267" r_stop="372" r_length="106" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="63470" i_stop="64018" i_length="549">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.992" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="64019" g_stop="64165" g_length="147"/>
          <reference_exon_boundary r_type="cDNA" r_start="373" r_stop="519" r_length="147" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="64166" i_stop="64569" i_length="404">
            <donor d_prob="0.991" d_score="1.00"/>
            <acceptor a_prob="0.619" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="64570" g_stop="64941" g_length="372"/>
          <reference_exon_boundary r_type="cDNA" r_start="520" r_stop="891" r_length="372" r_score="0.997"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLe0018B07.1" gen_strand="+" ref_id="SGN-E703908" ref_strand="+">
        <total_alignment_score>0.999</total_alignment_score>
        <cumulative_length_of_scored_exons>891</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0018B07.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E703908" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="62811" e_stop="62879"/>
          <exon e_start="63061" e_stop="63257"/>
          <exon e_start="63364" e_stop="63469"/>
          <exon e_start="64019" e_stop="64165"/>
          <exon e_start="64570" e_stop="64941"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAAGAGTGGGTTCACCAGCCCATTGTCAGCAAGGAAGGTCCTCGATTTTTTGCTAGTGACTTTTGGGAGGTATAGTTACTGTTAGAATTATTCATTTTTTCATTTTCCATACGTGTCTATGTAAGACAAGATTGATATAAAACTTGCTAGATTGTGTCCCATACAAATACCCCACCCCACGTGAAATAATTCATTTTCACATCATCTGACTATGTACATAAGATATTGATACCTTTAATTTGTGAAACAGTTTCTGACTCGCACAGTTTGGTGGGCAATTCCTACCATATGGCTTCCAGTTGTGTGCTATAGCATCTCTGTTTCTATCCGTATGGGTCGTACTGTTCCAGAGGTGGCACTGTTGGTGGTTTTTGGCATTTTCATCTGGACACTGATGGAATACACTCTTCATCGTTTTCTTTTCCATATCAATACAACGAGCTATTGGTTAGTGCTCTCCCTGTTCTTTTAGTAACCTGAGAAGGGAATGTTCTTCTAGCCCTCTGCTTCAGGTTCTTTATTCCTGTGTGCTTAAACTGATCTTTTGTTACAGGGGAAACACAATTCATTATCTTCTTCATGGCTGTCATCATAAGCATCCCATGGATGGTCTACGGCTGGTTTTTCCTCCTGCTGCAACGGCTATTCTCCTCGTACCAGTACGTGAGATTTAATATCTTAGCATTGTTTTATATTTTATCCTGAGAACCTTGTTTGTTTTTTGATTTTTTGTAATTTCACACAAATCTAGAAGATCCCAATTTCAAATGGTTAAAACCGCTTTTCGTGAAATAAAAGATAATTACTCTCTCCATTCGTCAATTGTTGCTACATATGGTTTTCGGAGGTCAAGCAATGCATTGGCAAGGCCATTTCATCTGCCTAATTATTGAAGAGAAACACTAAAAAGAATTAAGCACTTGGAGGGTATACATCAGATATTACATGAAAATCCACTTGACAAATTCTAGTTTAATTTTGGAAGAGTCTACATGGCCGTAGCAACTAAAGGGATATAATACTAGTCTACATCAACAGCTAGTCAAAGTTGGTAGTTTCTATACAAAATGTTGCAAGTTGAAAATCATAGGCTCTTATTATTTGCTTTCCCCAAATGACATTGATCACGACTACACTTATGCTGAATTTTGGGGGTGTGCTGAAGAGCAATGATTATTTGCTTTTGATACTGTACTTTGTAATTGCAGTTCTGGAACTTGATCAAATTGCTGGCAACTCCCACTACTGCTCCTGCTTTGTTTGGAGGCGGTTTATTGGGCTATGTTATGTATGATGTAACCCACTACTACTTGCATCACGGGCAACCAACAGTTGAAGTGCCTAAAAATCTCAAGGTAAGAGGATATGTTTGTTAACATCTCCCCAACGGCTTCATTGTGGTTTTTCAGAGAGTTTTTGGTGATGTCTCCTGTCAGGTGTAATAATGTGTTTGAGAAGATATTTTTTAGACCCTGCTGGTTTCTTTGTTTTAACCTTTTCAACTACTAACAGGAGAATCGTTATACCATTGCAAATTATGTTTTCACTTGTGGTACTTGAGAGTAGAAACTGTTGTTTCAGGTTATAGTTTGTGGTTCAATCCTGTCTTAACGGTAATTAAGAAGTGTCTGCCTGGGGTTTATCGTGGGTTAGGGTTGTGTTGAAGTGATATTTTCATCTCAATTTATGAATCTCGATAAGATGCAGTGTTCAACCTGTTCTATGATCTAACAAGTGATCTTTTGCCCTTCTTTCACAGAAATATCACTTGAATCATCATTTTCGTATCCAGAACAAAGGTTTTGGTATCACCTCTTCCTTCTGGGACAAAGTGTTTGGAACTCTACCACATTCAAAATCAGCCAAGAACAGATGATTCCCTTCGGATAGGAGAATCACAGCACTAAGTACTTTTTATTAGAAGGGTTAGAATTATTATTTTTTTCTTTGAAATCCAGTTCCAGTCTTTTCATTTTGCCACTATGTTCATGCTACAGTTTAATTGGAACTTGGCATTCCATCCTTGTGACAACTTGTGTAAGGGTTACGTAACCGTGCTGCGAAACAATTGTGCTCATCAGTCCATCTAGGTTGTATTTAATTTTATCATTGGGCTGTATGTTGGCCATTT</genome_strand>
        <mrna_strand>CAAGAGTGGGTTCACCAGCCCATTGTCAGCAAGGAAGGTCCTCGATTTTTTGCTAGTGACTTTTGGGAG.....................................................................................................................................................................................TTTCTGACTCGCACAGTTTGGTGGGCAATTCCTACCATATGGCTTCCAGTTGTGTGCTATAGCATCTCTGTTTCTATCCGTATGGGTCGTACTGTTCCAGAGGTGGCACTGTTGGTGGTTTTTGGCATTTTCATCTGGACACTGATGGAATACACTCTTCATCGTTTTCTTTTCCATATCAATACAACGAGCTATTG..........................................................................................................GGGAAACACAATTCATTATCTTCTTCATGGCTGTCATCATAAGCATCCCATGGATGGTCTACGGCTGGTTTTTCCTCCTGCTGCAACGGCTATTCTCCTCGTACCA.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTCTGGAACTTGATCAAATTGCTGGCAACTCCCACTACTGCTCCTGCTTTGTTTGGAGGCGGTTTATTGGGCTATGTTATGTATGATGTAACCCACTACTACTTGCATCACGGGCAACCAACAGTTGAAGTGCCTAAAAATCTCAAG....................................................................................................................................................................................................................................................................................................................................................................................................................AAATATCACTTGAATCATCATTTTCGTATCCAGAACAAAGGTTTTGGTATCACCTCTTCCTTCTGGGACAAAGTGTTTGGAACTCTACCACATTCAAAATCAGCCAAGAACAGATGATTCCCTTCGGATAGGAGAATCACAGCACTAAGTACTTTTTATTAGAAGGGTTAGAATTATTATTTTTTTCTTTGAAATCCAGTTCCAGTCTTTTCATTTTGCCACTATGTTCATGCTACAGTTTAATTGGAACTTGGCATTCCATCCTTGTGACAACTTGTGTAAGGGTTACGTAACCGTGCTGCGAAACAATTGTGCTCATCAGTCCATCTAGGGTGTATTTAATTTTATCATTGGGCTGTATGTTGGCCATTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0018B07-nGyJi/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E355531" ref_strand="+" ref_description="SGN-E355531 [cTOS-25-O10]">
      <seq>catggatggtctacggctggtttttcctcccgctgcaacggctattctcctcgtaccattctggaacttgatcaaattgctggcaactcccactactgctcctgctttgtttggaggcggtttattgggctatgttatgtatgatgtaacccactactacttgcatcacgggcaaccaacagttgaagtgcctaaaaatctcaagaaatatcacttgaatcatcattttcgtatccagaacaaaggttttggtatcacctcttccttctgggacaaagtgtttggaactctaccacattcaaaatcagccaagaacagatgattcccttcggataggagaatcacagcactaagtactttttattagaagggttagaattattatttttttctttgaaatccagttccagtcttttcattttgccactatgttcatgctacagtttaattggaacttggcattccatccttgtgacaacttgtgtaagggttacgtaaccgtgctgcgaaacaattgtgctcatcagtccatctaggttgtatttaattttatcattgggctgtatgttggccatttatttgtaccttgtaccagtttggcaattggaaaaatcctgttgattcatgcaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0018B07-nGyJi/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02SLe0018B07.1" temp_strand="+" temp_description="C02SLe0018B07.1  AC215448.2 htgs_phase:3 submitted_to_sgn_as:C02SLe0018B07 sequenced_by:kribb upload_account_name:korea">
        <position start="63112" stop="65294"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="63412" g_stop="63469" g_length="58"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="58" r_length="58" r_score="0.983"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="63470" i_stop="64018" i_length="549">
            <donor d_prob="0.997" d_score="0.98"/>
            <acceptor a_prob="0.992" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="64019" g_stop="64165" g_length="147"/>
          <reference_exon_boundary r_type="cDNA" r_start="59" r_stop="205" r_length="147" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="64166" i_stop="64569" i_length="404">
            <donor d_prob="0.991" d_score="1.00"/>
            <acceptor a_prob="0.619" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="64570" g_stop="64994" g_length="425"/>
          <reference_exon_boundary r_type="cDNA" r_start="206" r_stop="630" r_length="425" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLe0018B07.1" gen_strand="+" ref_id="SGN-E355531" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>630</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0018B07.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E355531" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="63412" e_stop="63469"/>
          <exon e_start="64019" e_stop="64165"/>
          <exon e_start="64570" e_stop="64994"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CATGGATGGTCTACGGCTGGTTTTTCCTCCTGCTGCAACGGCTATTCTCCTCGTACCAGTACGTGAGATTTAATATCTTAGCATTGTTTTATATTTTATCCTGAGAACCTTGTTTGTTTTTTGATTTTTTGTAATTTCACACAAATCTAGAAGATCCCAATTTCAAATGGTTAAAACCGCTTTTCGTGAAATAAAAGATAATTACTCTCTCCATTCGTCAATTGTTGCTACATATGGTTTTCGGAGGTCAAGCAATGCATTGGCAAGGCCATTTCATCTGCCTAATTATTGAAGAGAAACACTAAAAAGAATTAAGCACTTGGAGGGTATACATCAGATATTACATGAAAATCCACTTGACAAATTCTAGTTTAATTTTGGAAGAGTCTACATGGCCGTAGCAACTAAAGGGATATAATACTAGTCTACATCAACAGCTAGTCAAAGTTGGTAGTTTCTATACAAAATGTTGCAAGTTGAAAATCATAGGCTCTTATTATTTGCTTTCCCCAAATGACATTGATCACGACTACACTTATGCTGAATTTTGGGGGTGTGCTGAAGAGCAATGATTATTTGCTTTTGATACTGTACTTTGTAATTGCAGTTCTGGAACTTGATCAAATTGCTGGCAACTCCCACTACTGCTCCTGCTTTGTTTGGAGGCGGTTTATTGGGCTATGTTATGTATGATGTAACCCACTACTACTTGCATCACGGGCAACCAACAGTTGAAGTGCCTAAAAATCTCAAGGTAAGAGGATATGTTTGTTAACATCTCCCCAACGGCTTCATTGTGGTTTTTCAGAGAGTTTTTGGTGATGTCTCCTGTCAGGTGTAATAATGTGTTTGAGAAGATATTTTTTAGACCCTGCTGGTTTCTTTGTTTTAACCTTTTCAACTACTAACAGGAGAATCGTTATACCATTGCAAATTATGTTTTCACTTGTGGTACTTGAGAGTAGAAACTGTTGTTTCAGGTTATAGTTTGTGGTTCAATCCTGTCTTAACGGTAATTAAGAAGTGTCTGCCTGGGGTTTATCGTGGGTTAGGGTTGTGTTGAAGTGATATTTTCATCTCAATTTATGAATCTCGATAAGATGCAGTGTTCAACCTGTTCTATGATCTAACAAGTGATCTTTTGCCCTTCTTTCACAGAAATATCACTTGAATCATCATTTTCGTATCCAGAACAAAGGTTTTGGTATCACCTCTTCCTTCTGGGACAAAGTGTTTGGAACTCTACCACATTCAAAATCAGCCAAGAACAGATGATTCCCTTCGGATAGGAGAATCACAGCACTAAGTACTTTTTATTAGAAGGGTTAGAATTATTATTTTTTTCTTTGAAATCCAGTTCCAGTCTTTTCATTTTGCCACTATGTTCATGCTACAGTTTAATTGGAACTTGGCATTCCATCCTTGTGACAACTTGTGTAAGGGTTACGTAACCGTGCTGCGAAACAATTGTGCTCATCAGTCCATCTAGGTTGTATTTAATTTTATCATTGGGCTGTATGTTGGCCATTTATTTGTACCTTGTACCAGTTTGGCAATTGGAAAAATCCTGTTGATTCATGCAA</genome_strand>
        <mrna_strand>CATGGATGGTCTACGGCTGGTTTTTCCTCCCGCTGCAACGGCTATTCTCCTCGTACCA.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTCTGGAACTTGATCAAATTGCTGGCAACTCCCACTACTGCTCCTGCTTTGTTTGGAGGCGGTTTATTGGGCTATGTTATGTATGATGTAACCCACTACTACTTGCATCACGGGCAACCAACAGTTGAAGTGCCTAAAAATCTCAAG....................................................................................................................................................................................................................................................................................................................................................................................................................AAATATCACTTGAATCATCATTTTCGTATCCAGAACAAAGGTTTTGGTATCACCTCTTCCTTCTGGGACAAAGTGTTTGGAACTCTACCACATTCAAAATCAGCCAAGAACAGATGATTCCCTTCGGATAGGAGAATCACAGCACTAAGTACTTTTTATTAGAAGGGTTAGAATTATTATTTTTTTCTTTGAAATCCAGTTCCAGTCTTTTCATTTTGCCACTATGTTCATGCTACAGTTTAATTGGAACTTGGCATTCCATCCTTGTGACAACTTGTGTAAGGGTTACGTAACCGTGCTGCGAAACAATTGTGCTCATCAGTCCATCTAGGTTGTATTTAATTTTATCATTGGGCTGTATGTTGGCCATTTATTTGTACCTTGTACCAGTTTGGCAATTGGAAAAATCCTGTTGATTCATGCAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0018B07-nGyJi/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E349897" ref_strand="+" ref_description="SGN-E349897 [cTOS-3-M1]">
      <seq>catggatggtctacggctggtttttcctcccgctgcaacggctattctcctcgtaccattctggaacttgatcaaattgctggcaactcccactactgctcctgctttgtttggaggcggtttattgggctatgttatgtatgatgtaacccactactacttgcatcacgggcaaccaacagttgaagtgcctaaaaatctcaagaaatatcacttgaatcatcattttcgtatccagaacaaaggttttggtatcacctcttccttctgggacaaagtgtttggaactctaccacattcaaaatcagccaagaacagatgattcccttcggataggagaatcacagcactaagtactttttattagaagggttagaattattatttttttctttgaaatccagttccagtcttttcattttgccactatgttcatgctacagtttaattggaacttggcattccatccttgtgacaacttgtgtaagggttacgtaaccgtgctgcgaaacaattgtgctcatcagtccatctaagttgtatttaattttatcattgggctggatgttggccatttatttgtaccttgtaccaatttggcaattggaaaaatcctgttgattcatgcaacaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0018B07-nGyJi/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02SLe0018B07.1" temp_strand="+" temp_description="C02SLe0018B07.1  AC215448.2 htgs_phase:3 submitted_to_sgn_as:C02SLe0018B07 sequenced_by:kribb upload_account_name:korea">
        <position start="63112" stop="65298"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="63412" g_stop="63469" g_length="58"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="58" r_length="58" r_score="0.983"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="63470" i_stop="64018" i_length="549">
            <donor d_prob="0.997" d_score="0.98"/>
            <acceptor a_prob="0.992" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="64019" g_stop="64165" g_length="147"/>
          <reference_exon_boundary r_type="cDNA" r_start="59" r_stop="205" r_length="147" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="64166" i_stop="64569" i_length="404">
            <donor d_prob="0.991" d_score="1.00"/>
            <acceptor a_prob="0.619" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="64570" g_stop="64990" g_length="421"/>
          <reference_exon_boundary r_type="cDNA" r_start="206" r_stop="626" r_length="421" r_score="0.993"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="629" polyA_stop="642"/>
      <MATCH_line gen_id="C02SLe0018B07.1" gen_strand="+" ref_id="SGN-E349897" ref_strand="+">
        <total_alignment_score>0.994</total_alignment_score>
        <cumulative_length_of_scored_exons>626</cumulative_length_of_scored_exons>
        <coverage percentage="0.975" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0018B07.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E349897" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="63412" e_stop="63469"/>
          <exon e_start="64019" e_stop="64165"/>
          <exon e_start="64570" e_stop="64990"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CATGGATGGTCTACGGCTGGTTTTTCCTCCTGCTGCAACGGCTATTCTCCTCGTACCAGTACGTGAGATTTAATATCTTAGCATTGTTTTATATTTTATCCTGAGAACCTTGTTTGTTTTTTGATTTTTTGTAATTTCACACAAATCTAGAAGATCCCAATTTCAAATGGTTAAAACCGCTTTTCGTGAAATAAAAGATAATTACTCTCTCCATTCGTCAATTGTTGCTACATATGGTTTTCGGAGGTCAAGCAATGCATTGGCAAGGCCATTTCATCTGCCTAATTATTGAAGAGAAACACTAAAAAGAATTAAGCACTTGGAGGGTATACATCAGATATTACATGAAAATCCACTTGACAAATTCTAGTTTAATTTTGGAAGAGTCTACATGGCCGTAGCAACTAAAGGGATATAATACTAGTCTACATCAACAGCTAGTCAAAGTTGGTAGTTTCTATACAAAATGTTGCAAGTTGAAAATCATAGGCTCTTATTATTTGCTTTCCCCAAATGACATTGATCACGACTACACTTATGCTGAATTTTGGGGGTGTGCTGAAGAGCAATGATTATTTGCTTTTGATACTGTACTTTGTAATTGCAGTTCTGGAACTTGATCAAATTGCTGGCAACTCCCACTACTGCTCCTGCTTTGTTTGGAGGCGGTTTATTGGGCTATGTTATGTATGATGTAACCCACTACTACTTGCATCACGGGCAACCAACAGTTGAAGTGCCTAAAAATCTCAAGGTAAGAGGATATGTTTGTTAACATCTCCCCAACGGCTTCATTGTGGTTTTTCAGAGAGTTTTTGGTGATGTCTCCTGTCAGGTGTAATAATGTGTTTGAGAAGATATTTTTTAGACCCTGCTGGTTTCTTTGTTTTAACCTTTTCAACTACTAACAGGAGAATCGTTATACCATTGCAAATTATGTTTTCACTTGTGGTACTTGAGAGTAGAAACTGTTGTTTCAGGTTATAGTTTGTGGTTCAATCCTGTCTTAACGGTAATTAAGAAGTGTCTGCCTGGGGTTTATCGTGGGTTAGGGTTGTGTTGAAGTGATATTTTCATCTCAATTTATGAATCTCGATAAGATGCAGTGTTCAACCTGTTCTATGATCTAACAAGTGATCTTTTGCCCTTCTTTCACAGAAATATCACTTGAATCATCATTTTCGTATCCAGAACAAAGGTTTTGGTATCACCTCTTCCTTCTGGGACAAAGTGTTTGGAACTCTACCACATTCAAAATCAGCCAAGAACAGATGATTCCCTTCGGATAGGAGAATCACAGCACTAAGTACTTTTTATTAGAAGGGTTAGAATTATTATTTTTTTCTTTGAAATCCAGTTCCAGTCTTTTCATTTTGCCACTATGTTCATGCTACAGTTTAATTGGAACTTGGCATTCCATCCTTGTGACAACTTGTGTAAGGGTTACGTAACCGTGCTGCGAAACAATTGTGCTCATCAGTCCATCTAGGTTGTATTTAATTTTATCATTGGGCTGTATGTTGGCCATTTATTTGTACCTTGTACCAGTTTGGCAATTGGAAAAATCCTGTTGATTCAT</genome_strand>
        <mrna_strand>CATGGATGGTCTACGGCTGGTTTTTCCTCCCGCTGCAACGGCTATTCTCCTCGTACCA.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTCTGGAACTTGATCAAATTGCTGGCAACTCCCACTACTGCTCCTGCTTTGTTTGGAGGCGGTTTATTGGGCTATGTTATGTATGATGTAACCCACTACTACTTGCATCACGGGCAACCAACAGTTGAAGTGCCTAAAAATCTCAAG....................................................................................................................................................................................................................................................................................................................................................................................................................AAATATCACTTGAATCATCATTTTCGTATCCAGAACAAAGGTTTTGGTATCACCTCTTCCTTCTGGGACAAAGTGTTTGGAACTCTACCACATTCAAAATCAGCCAAGAACAGATGATTCCCTTCGGATAGGAGAATCACAGCACTAAGTACTTTTTATTAGAAGGGTTAGAATTATTATTTTTTTCTTTGAAATCCAGTTCCAGTCTTTTCATTTTGCCACTATGTTCATGCTACAGTTTAATTGGAACTTGGCATTCCATCCTTGTGACAACTTGTGTAAGGGTTACGTAACCGTGCTGCGAAACAATTGTGCTCATCAGTCCATCTAAGTTGTATTTAATTTTATCATTGGGCTGGATGTTGGCCATTTATTTGTACCTTGTACCAATTTGGCAATTGGAAAAATCCTGTTGATTCAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0018B07-nGyJi/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E353134" ref_strand="+" ref_description="SGN-E353134 [cTOS-14-E7]">
      <seq>catggatggtctacggctggtttttcctcccgctgcaacggctattctcctcgtaccattctggaacttgatcaaattgctggcaactcccactactgctcctgctttgtttggaggcggtttattgggctatgttatgtatgatgtaacccactactacttgcatcacgggcaaccaacagttgaagtgcctaaaaatctcaagaaatatcacttgaatcatcattttcgtatccagaacaaaggttttggtatcacctcttccttctgggacaaagtgtttggaactctaccacattcaaaatcagccaagaacagatgattcccttcggataggagaatcacagcactaagtactttttattagaagggttagaattattatttttttctttgaaatccagttccagtcttttcattttgccactatgttcatgctacagtttaattggaacttggcattccatccttgtgacaacttgtgtaagggttacgtaaccgtgctgcgaaacaattgtgctcatcagtccatctaggttgtatttaattttatcattgggctgtatgttggccatttatttgtaccttgtaccagtttggcaattggaaaaatcctgttgattcatgcaacaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0018B07-nGyJi/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02SLe0018B07.1" temp_strand="+" temp_description="C02SLe0018B07.1  AC215448.2 htgs_phase:3 submitted_to_sgn_as:C02SLe0018B07 sequenced_by:kribb upload_account_name:korea">
        <position start="63112" stop="65298"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="63412" g_stop="63469" g_length="58"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="58" r_length="58" r_score="0.983"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="63470" i_stop="64018" i_length="549">
            <donor d_prob="0.997" d_score="0.98"/>
            <acceptor a_prob="0.992" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="64019" g_stop="64165" g_length="147"/>
          <reference_exon_boundary r_type="cDNA" r_start="59" r_stop="205" r_length="147" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="64166" i_stop="64569" i_length="404">
            <donor d_prob="0.991" d_score="1.00"/>
            <acceptor a_prob="0.619" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="64570" g_stop="64990" g_length="421"/>
          <reference_exon_boundary r_type="cDNA" r_start="206" r_stop="626" r_length="421" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="629" polyA_stop="641"/>
      <MATCH_line gen_id="C02SLe0018B07.1" gen_strand="+" ref_id="SGN-E353134" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>626</cumulative_length_of_scored_exons>
        <coverage percentage="0.977" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0018B07.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E353134" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="63412" e_stop="63469"/>
          <exon e_start="64019" e_stop="64165"/>
          <exon e_start="64570" e_stop="64990"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CATGGATGGTCTACGGCTGGTTTTTCCTCCTGCTGCAACGGCTATTCTCCTCGTACCAGTACGTGAGATTTAATATCTTAGCATTGTTTTATATTTTATCCTGAGAACCTTGTTTGTTTTTTGATTTTTTGTAATTTCACACAAATCTAGAAGATCCCAATTTCAAATGGTTAAAACCGCTTTTCGTGAAATAAAAGATAATTACTCTCTCCATTCGTCAATTGTTGCTACATATGGTTTTCGGAGGTCAAGCAATGCATTGGCAAGGCCATTTCATCTGCCTAATTATTGAAGAGAAACACTAAAAAGAATTAAGCACTTGGAGGGTATACATCAGATATTACATGAAAATCCACTTGACAAATTCTAGTTTAATTTTGGAAGAGTCTACATGGCCGTAGCAACTAAAGGGATATAATACTAGTCTACATCAACAGCTAGTCAAAGTTGGTAGTTTCTATACAAAATGTTGCAAGTTGAAAATCATAGGCTCTTATTATTTGCTTTCCCCAAATGACATTGATCACGACTACACTTATGCTGAATTTTGGGGGTGTGCTGAAGAGCAATGATTATTTGCTTTTGATACTGTACTTTGTAATTGCAGTTCTGGAACTTGATCAAATTGCTGGCAACTCCCACTACTGCTCCTGCTTTGTTTGGAGGCGGTTTATTGGGCTATGTTATGTATGATGTAACCCACTACTACTTGCATCACGGGCAACCAACAGTTGAAGTGCCTAAAAATCTCAAGGTAAGAGGATATGTTTGTTAACATCTCCCCAACGGCTTCATTGTGGTTTTTCAGAGAGTTTTTGGTGATGTCTCCTGTCAGGTGTAATAATGTGTTTGAGAAGATATTTTTTAGACCCTGCTGGTTTCTTTGTTTTAACCTTTTCAACTACTAACAGGAGAATCGTTATACCATTGCAAATTATGTTTTCACTTGTGGTACTTGAGAGTAGAAACTGTTGTTTCAGGTTATAGTTTGTGGTTCAATCCTGTCTTAACGGTAATTAAGAAGTGTCTGCCTGGGGTTTATCGTGGGTTAGGGTTGTGTTGAAGTGATATTTTCATCTCAATTTATGAATCTCGATAAGATGCAGTGTTCAACCTGTTCTATGATCTAACAAGTGATCTTTTGCCCTTCTTTCACAGAAATATCACTTGAATCATCATTTTCGTATCCAGAACAAAGGTTTTGGTATCACCTCTTCCTTCTGGGACAAAGTGTTTGGAACTCTACCACATTCAAAATCAGCCAAGAACAGATGATTCCCTTCGGATAGGAGAATCACAGCACTAAGTACTTTTTATTAGAAGGGTTAGAATTATTATTTTTTTCTTTGAAATCCAGTTCCAGTCTTTTCATTTTGCCACTATGTTCATGCTACAGTTTAATTGGAACTTGGCATTCCATCCTTGTGACAACTTGTGTAAGGGTTACGTAACCGTGCTGCGAAACAATTGTGCTCATCAGTCCATCTAGGTTGTATTTAATTTTATCATTGGGCTGTATGTTGGCCATTTATTTGTACCTTGTACCAGTTTGGCAATTGGAAAAATCCTGTTGATTCAT</genome_strand>
        <mrna_strand>CATGGATGGTCTACGGCTGGTTTTTCCTCCCGCTGCAACGGCTATTCTCCTCGTACCA.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTCTGGAACTTGATCAAATTGCTGGCAACTCCCACTACTGCTCCTGCTTTGTTTGGAGGCGGTTTATTGGGCTATGTTATGTATGATGTAACCCACTACTACTTGCATCACGGGCAACCAACAGTTGAAGTGCCTAAAAATCTCAAG....................................................................................................................................................................................................................................................................................................................................................................................................................AAATATCACTTGAATCATCATTTTCGTATCCAGAACAAAGGTTTTGGTATCACCTCTTCCTTCTGGGACAAAGTGTTTGGAACTCTACCACATTCAAAATCAGCCAAGAACAGATGATTCCCTTCGGATAGGAGAATCACAGCACTAAGTACTTTTTATTAGAAGGGTTAGAATTATTATTTTTTTCTTTGAAATCCAGTTCCAGTCTTTTCATTTTGCCACTATGTTCATGCTACAGTTTAATTGGAACTTGGCATTCCATCCTTGTGACAACTTGTGTAAGGGTTACGTAACCGTGCTGCGAAACAATTGTGCTCATCAGTCCATCTAGGTTGTATTTAATTTTATCATTGGGCTGTATGTTGGCCATTTATTTGTACCTTGTACCAGTTTGGCAATTGGAAAAATCCTGTTGATTCAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0018B07-nGyJi/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E278073" ref_strand="-" ref_description="SGN-E278073 [cLER-4-O5]">
      <seq>caacagttgaagtgcctaaaatctcaagaaatatcacttgaatcatcattttcgtatccagaacaaaggttttggtatcacctcttccttatgggacaaagtgtttggaactctaccacattcaaaatcagccaagaacagatgattcccttcggataggagaatcacagcactaagtactttttattagaagggttagaattattatttttttctttgaaatccagttccagtcttttcattttgccactatgttcatgttacagtttaattggaacttggcattccatccttgtgacaacttgtgtaagggttacgtaaccgtgctgcaaaacaattgtgctcatcagtccatntaggttgtatttaat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0018B07-nGyJi/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02SLe0018B07.1" temp_strand="+" temp_description="C02SLe0018B07.1  AC215448.2 htgs_phase:3 submitted_to_sgn_as:C02SLe0018B07 sequenced_by:kribb upload_account_name:korea">
        <position start="63837" stop="65212"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="64137" g_stop="64165" g_length="29"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="28" r_length="28" r_score="0.966"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="64166" i_stop="64569" i_length="404">
            <donor d_prob="0.991" d_score="0.00"/>
            <acceptor a_prob="0.619" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="64570" g_stop="64912" g_length="343"/>
          <reference_exon_boundary r_type="cDNA" r_start="29" r_stop="371" r_length="343" r_score="0.988"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLe0018B07.1" gen_strand="+" ref_id="SGN-E278073" ref_strand="-">
        <total_alignment_score>0.988</total_alignment_score>
        <cumulative_length_of_scored_exons>372</cumulative_length_of_scored_exons>
        <coverage percentage="1.003" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0018B07.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E278073" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="64137" e_stop="64165"/>
          <exon e_start="64570" e_stop="64912"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAACAGTTGAAGTGCCTAAAAATCTCAAGGTAAGAGGATATGTTTGTTAACATCTCCCCAACGGCTTCATTGTGGTTTTTCAGAGAGTTTTTGGTGATGTCTCCTGTCAGGTGTAATAATGTGTTTGAGAAGATATTTTTTAGACCCTGCTGGTTTCTTTGTTTTAACCTTTTCAACTACTAACAGGAGAATCGTTATACCATTGCAAATTATGTTTTCACTTGTGGTACTTGAGAGTAGAAACTGTTGTTTCAGGTTATAGTTTGTGGTTCAATCCTGTCTTAACGGTAATTAAGAAGTGTCTGCCTGGGGTTTATCGTGGGTTAGGGTTGTGTTGAAGTGATATTTTCATCTCAATTTATGAATCTCGATAAGATGCAGTGTTCAACCTGTTCTATGATCTAACAAGTGATCTTTTGCCCTTCTTTCACAGAAATATCACTTGAATCATCATTTTCGTATCCAGAACAAAGGTTTTGGTATCACCTCTTCCTTCTGGGACAAAGTGTTTGGAACTCTACCACATTCAAAATCAGCCAAGAACAGATGATTCCCTTCGGATAGGAGAATCACAGCACTAAGTACTTTTTATTAGAAGGGTTAGAATTATTATTTTTTTCTTTGAAATCCAGTTCCAGTCTTTTCATTTTGCCACTATGTTCATGCTACAGTTTAATTGGAACTTGGCATTCCATCCTTGTGACAACTTGTGTAAGGGTTACGTAACCGTGCTGCGAAACAATTGTGCTCATCAGTCCATCTAGGTTGTATTTAAT</genome_strand>
        <mrna_strand>CAACAGTTGAAGTGCCT-AAAATCTCAAG....................................................................................................................................................................................................................................................................................................................................................................................................................AAATATCACTTGAATCATCATTTTCGTATCCAGAACAAAGGTTTTGGTATCACCTCTTCCTTATGGGACAAAGTGTTTGGAACTCTACCACATTCAAAATCAGCCAAGAACAGATGATTCCCTTCGGATAGGAGAATCACAGCACTAAGTACTTTTTATTAGAAGGGTTAGAATTATTATTTTTTTCTTTGAAATCCAGTTCCAGTCTTTTCATTTTGCCACTATGTTCATGTTACAGTTTAATTGGAACTTGGCATTCCATCCTTGTGACAACTTGTGTAAGGGTTACGTAACCGTGCTGCAAAACAATTGTGCTCATCAGTCCATNTAGGTTGTATTTAAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0018B07-nGyJi/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E203566" ref_strand="+" ref_description="SGN-E203566 [cLEC-15-J16]">
      <seq>atgtcttgacccttgttatattcttgcttcttgtctcagatactaaatatttggagggaatttttattgagtctgaatttggattatcttcaaacatgtcttttccatggaagaagttgaagaagacaagtatatctcaattggtgaaggaccatattcattctcaaaaacctcttatggtggaaactggtttcccttcttcccttgtggatctttttgtcaagaatcgtcgaaagttcatgaaaacttccaagaaaaagagggctccttcagtggtggctgagctccctttaagttctctttcgactccaccttcccctgtatgttgcatatttgagaagtctgagttaaaggggtgtcaggaaaaagatgaaagatttgatcttgatgaagctgttgataaaaacacggtgttagtcgcgcttctgaaggtctttctggtggtgtttttggttttaggaacaaagaaacttgtaatgggaataacaatgt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0018B07-nGyJi/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02SLe0018B07.1" temp_strand="+" temp_description="C02SLe0018B07.1  AC215448.2 htgs_phase:3 submitted_to_sgn_as:C02SLe0018B07 sequenced_by:kribb upload_account_name:korea">
        <position start="65470" stop="66561"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="65770" g_stop="66261" g_length="492"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="492" r_length="492" r_score="0.998"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLe0018B07.1" gen_strand="+" ref_id="SGN-E203566" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>492</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0018B07.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E203566" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="65770" e_stop="66261"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATGTCTTGACCCTTGTTATATTCTTGCTTCTTGTCTCAGATACTAAATATTTGGAGGGAATTTTTATTGAGTCTGAATTTGGATTATCTTCAAACATGTCTTTTCCATGGAAGAAGTTGAAGAAGACAAGTATATCTCAATTGGTGAAGGACCATATTCATTCTCAAAAACCTCTTATGGTGGAAACTGGTTTCCCTTCTTCCCTTGTGGATCTTTTTGTCAAGAATCGTCGAAAGTTCATGAAAACTTCCAAGAAAAAGAGGGCTCCTCCAGTGGTGGCTGAGCTCCCTTTAAGTTCTCTTTCGACTCCACCTTCCCCTGTATGTTGCATATTTGAGAAGTCTGAGTTAAAGGGGTGTCAGGAAAAAGATGAAAGATTTGATCTTGATGAAGCTGTTGATAAAAACACGGTGTTAGTCGCGCTTCTGAAGGTCTTTCTGGTGGTGTTTTTGGTTTTAGGAACAAAGAAACTTGTAATGGGAATAACAATGT</genome_strand>
        <mrna_strand>ATGTCTTGACCCTTGTTATATTCTTGCTTCTTGTCTCAGATACTAAATATTTGGAGGGAATTTTTATTGAGTCTGAATTTGGATTATCTTCAAACATGTCTTTTCCATGGAAGAAGTTGAAGAAGACAAGTATATCTCAATTGGTGAAGGACCATATTCATTCTCAAAAACCTCTTATGGTGGAAACTGGTTTCCCTTCTTCCCTTGTGGATCTTTTTGTCAAGAATCGTCGAAAGTTCATGAAAACTTCCAAGAAAAAGAGGGCTCCTTCAGTGGTGGCTGAGCTCCCTTTAAGTTCTCTTTCGACTCCACCTTCCCCTGTATGTTGCATATTTGAGAAGTCTGAGTTAAAGGGGTGTCAGGAAAAAGATGAAAGATTTGATCTTGATGAAGCTGTTGATAAAAACACGGTGTTAGTCGCGCTTCTGAAGGTCTTTCTGGTGGTGTTTTTGGTTTTAGGAACAAAGAAACTTGTAATGGGAATAACAATGT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0018B07-nGyJi/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E243215" ref_strand="+" ref_description="SGN-E243215 [cLEE-2-E2]">
      <seq>ttattgtagatgaccaattttttcttcgaatacgaaattaaattacaatacacacaaaaaaaatatttgaattttttttatttaaactaaggaatgaaagaaaaaaacaaaataagaataagaaactcaaattattataataaaagaagtcaaaaaataatttttgtatgaaaaaattaaaatataccttgaactttgatagaagaatcatatatatccctaaatattttttttaaaaaaaaattagaagtaacaaatataaatttaaaactaattttttaactttcgttaaatgaagggtatatgtgagccattttctaacggcaggggtatatgtgagccgtttgtataacgataagggcatatatgaaccacttttattacgagggatatatcagctctaaatgacaaagttgagaggtatatcagacccttttccctattttttaaaatttcatac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0018B07-nGyJi/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02SLe0018B07.1" temp_strand="-" temp_description="C02SLe0018B07.1  AC215448.2 htgs_phase:3 submitted_to_sgn_as:C02SLe0018B07 sequenced_by:kribb upload_account_name:korea">
        <position start="70351" stop="69307"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="70051" g_stop="69611" g_length="441"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="440" r_length="440" r_score="0.912"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLe0018B07.1" gen_strand="-" ref_id="SGN-E243215" ref_strand="+">
        <total_alignment_score>0.912</total_alignment_score>
        <cumulative_length_of_scored_exons>441</cumulative_length_of_scored_exons>
        <coverage percentage="0.959" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0018B07.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E243215" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="70051" e_stop="69611"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTATTGTAGATGATCAAATTTTTTCTTCGAATACAAAATTAAATTACAATACACACACAAAAAAAAATAGTTTAATTTTTTTTCTTTAAACTAAGGAATGAAAG-AAAAAA-ATAATAAGAATAAGAAACTCAAATAATTATAATAAAAGAAGTCAAAAAATAATTTATGTATGAAAAAAATTAAAATATACCTTGAACTTTGATAGAAGAATCATATATACCTCTAAATA-ATTTTTT-CAAAAAAATTAAAAGTAATAAATATAAATTTAAAACTAATTTTTTAACTTCCGTTAAATGAAGGGTATATGTGAGCCATTTTGTAACGACAGGGGTATATGTGAGCCGTTTGTATAACGGTAAGGGCATATATGAACCACTTTTATAACGAGGGGTATATCAGCTTCAAATAACAAAGTTTAGGGGTATATCAGACCCTTTTTCC</genome_strand>
        <mrna_strand>TTATTGTAGATGA-CCAATTTTTTCTTCGAATACGAAATTAAATTACAAT--ACACAC-AAAAAAAATATTTGAATTTTTTTTATTTAAACTAAGGAATGAAAGAAAAAAACAAAATAAGAATAAGAAACTCAAATTATTATAATAAAAGAAGTCAAAAAATAATTTTTGTATG-AAAAAATTAAAATATACCTTGAACTTTGATAGAAGAATCATATATATCCCTAAATATTTTTTTTAAAAAAAAATTAGAAGTAACAAATATAAATTTAAAACTAATTTTTTAACTTTCGTTAAATGAAGGGTATATGTGAGCCATTTTCTAACGGCAGGGGTATATGTGAGCCGTTTGTATAACGATAAGGGCATATATGAACCACTTTTATTACGAGGGATATATCAGCTCTAAATGACAAAGTTGAGAGGTATATCAGACCCTTTTCCC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0018B07-nGyJi/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E545973" ref_strand="+" ref_description="SGN-E545973 [TUS-69-B14]">
      <seq>tgaagatatactccaagtgccaggaattaattctgctgtgttcaccaaaggaatcttataagaaacagattgatgcaatgcatagtactgccttaaaagttctctcatggttggatagatttcttgataaagttgatatgtctgtggaagagatcacatcatctgcaaagggatttgatattcttatttatcctcaacagcttgttaaggagttcacattatgccaaactttgcccaaatatcagtggggcagtgcaatactagcaggaaacttcgtgtgtcctagctactctaatgtacagaataacacacttgaagaagaattatcatctggaacgactccatctagtgggtctttggtgtgtgtgacttacaagatatatttagccacggaaagggaatgcattatggaacatcttgaagggtctgaagagtttgagtttgagattggcagtggagccgtatctcctgttcttgaagcagttgtaacacagatgtctgttgaccagtctgcatgttttactatggaattgcctgcaaaagagattgttctagcagtggctcatgattctgcaaatatcatttcattattgtcttcaggtacttgcttaatgaaatgtgaagtcactttgctgcgtgtgacagtacccctggaggatagaatggaacaggccttattctctcccccattatcaaaacaacgtgttggatatgcggtgcagcaaattagaaaatcttgtgct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0018B07-nGyJi/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02SLe0018B07.1" temp_strand="+" temp_description="C02SLe0018B07.1  AC215448.2 htgs_phase:3 submitted_to_sgn_as:C02SLe0018B07 sequenced_by:kribb upload_account_name:korea">
        <position start="77146" stop="78660"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="77446" g_stop="78045" g_length="600"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="600" r_length="600" r_score="0.992"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="78046" i_stop="78217" i_length="172">
            <donor d_prob="0.948" d_score="1.00"/>
            <acceptor a_prob="0.653" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="78218" g_stop="78360" g_length="143"/>
          <reference_exon_boundary r_type="cDNA" r_start="601" r_stop="743" r_length="143" r_score="0.979"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLe0018B07.1" gen_strand="+" ref_id="SGN-E545973" ref_strand="+">
        <total_alignment_score>0.989</total_alignment_score>
        <cumulative_length_of_scored_exons>743</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0018B07.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E545973" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="77446" e_stop="78045"/>
          <exon e_start="78218" e_stop="78360"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGAAGATATACTCCAAGTGCCAGGAATTAATTCTGCTGTGTTCACCAAAGGAATCTTATAAGAAACAGATTGATGCAATGCATAGTACTGCCTTAAAAGTTCTCTCATGGTTGGATAGATTTCTTGATAAAGTTGATATGTCTGTGGAAGAGATCACATCATCTGCAAAGGGATTTGATATTCTTATTTATCCTCAACAGCTTGTTAAGGAGTTCACATTATGTCAAACTTTGCCCAAATATCAGTGGGGCAGTGCAACACTAGCAGGAAACTTCGTGTGTCCTAGCTACTCTAATGTACAGAATAACACACTTGAAGAAGAATTATCATCTGGAACGACTCCATCTAGTGGTTCTTTGGTGTGTGTGACTTACAAGATATATTTAGCCACGGAAAGGGAATGCATTATGGAACATCTTGAAGGGTCTGAAGAGTTTGAGTTTGAGATTGGCAGCGGAGCCGTATCTCCTGTTCTTGAAGCAGTTGTAACACAGATGTCCGTTGACCAGTCTGCATGTTTTACTATGGAATTGCCTGCAAAAGAGATTGTTCTAGCAGTGGCTCATGATTCTGCAAATATCATTTCATTATTGTCTTCAGGTAAAGTTAGGCATCTGTGTCATTTTATTCTGATTGCTTTGCCCTATTTGTATTGGTTTCTAATATAGAACATGCTTTCCGCTGATCACTTATCGTGTCCAAACCATTTAAAGTTTCTGATGTGTTCCTGTAATCTGAAGTTCCCTCTCCTCTCTGGACTCTCTGGAGGCAGGTACTTGCTTAATGAAATGTGAAGTCACTTTGCTGCGTGTGACAGTACCCCTGGAGGATAGAATGGAACAGGCCTTATTCTCTCCCCCATTATCAAAACAACGTGTTGAATATGCGGTGCAGCACATTAGAGAATCTTGTGCT</genome_strand>
        <mrna_strand>TGAAGATATACTCCAAGTGCCAGGAATTAATTCTGCTGTGTTCACCAAAGGAATCTTATAAGAAACAGATTGATGCAATGCATAGTACTGCCTTAAAAGTTCTCTCATGGTTGGATAGATTTCTTGATAAAGTTGATATGTCTGTGGAAGAGATCACATCATCTGCAAAGGGATTTGATATTCTTATTTATCCTCAACAGCTTGTTAAGGAGTTCACATTATGCCAAACTTTGCCCAAATATCAGTGGGGCAGTGCAATACTAGCAGGAAACTTCGTGTGTCCTAGCTACTCTAATGTACAGAATAACACACTTGAAGAAGAATTATCATCTGGAACGACTCCATCTAGTGGGTCTTTGGTGTGTGTGACTTACAAGATATATTTAGCCACGGAAAGGGAATGCATTATGGAACATCTTGAAGGGTCTGAAGAGTTTGAGTTTGAGATTGGCAGTGGAGCCGTATCTCCTGTTCTTGAAGCAGTTGTAACACAGATGTCTGTTGACCAGTCTGCATGTTTTACTATGGAATTGCCTGCAAAAGAGATTGTTCTAGCAGTGGCTCATGATTCTGCAAATATCATTTCATTATTGTCTTCAG............................................................................................................................................................................GTACTTGCTTAATGAAATGTGAAGTCACTTTGCTGCGTGTGACAGTACCCCTGGAGGATAGAATGGAACAGGCCTTATTCTCTCCCCCATTATCAAAACAACGTGTTGGATATGCGGTGCAGCAAATTAGAAAATCTTGTGCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0018B07-nGyJi/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E545966" ref_strand="+" ref_description="SGN-E545966 [TUS-69-B10]">
      <seq>tgaagatatactccaagtgccaggaattaattctgctgtgttcaccaaaggaatcttataagaaacagattgatgcaatgcatagtactgccttaaaagttctctcatggttggatagatttcttgataaagttgatatgtctgtggaagagatcacatcatctgcaaagggatttgatattcttatttatcctcaacagcttgttaaggagttcacattatgccaaactttgcccaaatatcagtggggcagtgcaatactagcaggaaacttcgtgtgtcctagctactctaatgtacagaataacacacttgaagaagaattatcatctggaacgactccatctagtgggtctttggtgtgtgtgacttacaagatatatttagccacggaaagggaatgcattatggaacatcttgaagggtctgaagagtttgagtttgagattggcagtggagccgtatctcctgttcttgaagcagttgtaacacagatgtctgttgaccagtctgcatgttttactatggaattgcctgcaaaagagattgttctagcagtggctcatgattctgcaaatatcatttcattattgtcttcaggtacttgcttaatgaaatgtgaagtcactttgctgcgtgtgacagtacccctgg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0018B07-nGyJi/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02SLe0018B07.1" temp_strand="+" temp_description="C02SLe0018B07.1  AC215448.2 htgs_phase:3 submitted_to_sgn_as:C02SLe0018B07 sequenced_by:kribb upload_account_name:korea">
        <position start="77146" stop="78571"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="77446" g_stop="78045" g_length="600"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="600" r_length="600" r_score="0.992"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="78046" i_stop="78217" i_length="172">
            <donor d_prob="0.948" d_score="1.00"/>
            <acceptor a_prob="0.653" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="78218" g_stop="78271" g_length="54"/>
          <reference_exon_boundary r_type="cDNA" r_start="601" r_stop="654" r_length="54" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLe0018B07.1" gen_strand="+" ref_id="SGN-E545966" ref_strand="+">
        <total_alignment_score>0.992</total_alignment_score>
        <cumulative_length_of_scored_exons>654</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0018B07.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E545966" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="77446" e_stop="78045"/>
          <exon e_start="78218" e_stop="78271"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGAAGATATACTCCAAGTGCCAGGAATTAATTCTGCTGTGTTCACCAAAGGAATCTTATAAGAAACAGATTGATGCAATGCATAGTACTGCCTTAAAAGTTCTCTCATGGTTGGATAGATTTCTTGATAAAGTTGATATGTCTGTGGAAGAGATCACATCATCTGCAAAGGGATTTGATATTCTTATTTATCCTCAACAGCTTGTTAAGGAGTTCACATTATGTCAAACTTTGCCCAAATATCAGTGGGGCAGTGCAACACTAGCAGGAAACTTCGTGTGTCCTAGCTACTCTAATGTACAGAATAACACACTTGAAGAAGAATTATCATCTGGAACGACTCCATCTAGTGGTTCTTTGGTGTGTGTGACTTACAAGATATATTTAGCCACGGAAAGGGAATGCATTATGGAACATCTTGAAGGGTCTGAAGAGTTTGAGTTTGAGATTGGCAGCGGAGCCGTATCTCCTGTTCTTGAAGCAGTTGTAACACAGATGTCCGTTGACCAGTCTGCATGTTTTACTATGGAATTGCCTGCAAAAGAGATTGTTCTAGCAGTGGCTCATGATTCTGCAAATATCATTTCATTATTGTCTTCAGGTAAAGTTAGGCATCTGTGTCATTTTATTCTGATTGCTTTGCCCTATTTGTATTGGTTTCTAATATAGAACATGCTTTCCGCTGATCACTTATCGTGTCCAAACCATTTAAAGTTTCTGATGTGTTCCTGTAATCTGAAGTTCCCTCTCCTCTCTGGACTCTCTGGAGGCAGGTACTTGCTTAATGAAATGTGAAGTCACTTTGCTGCGTGTGACAGTACCCCTGG</genome_strand>
        <mrna_strand>TGAAGATATACTCCAAGTGCCAGGAATTAATTCTGCTGTGTTCACCAAAGGAATCTTATAAGAAACAGATTGATGCAATGCATAGTACTGCCTTAAAAGTTCTCTCATGGTTGGATAGATTTCTTGATAAAGTTGATATGTCTGTGGAAGAGATCACATCATCTGCAAAGGGATTTGATATTCTTATTTATCCTCAACAGCTTGTTAAGGAGTTCACATTATGCCAAACTTTGCCCAAATATCAGTGGGGCAGTGCAATACTAGCAGGAAACTTCGTGTGTCCTAGCTACTCTAATGTACAGAATAACACACTTGAAGAAGAATTATCATCTGGAACGACTCCATCTAGTGGGTCTTTGGTGTGTGTGACTTACAAGATATATTTAGCCACGGAAAGGGAATGCATTATGGAACATCTTGAAGGGTCTGAAGAGTTTGAGTTTGAGATTGGCAGTGGAGCCGTATCTCCTGTTCTTGAAGCAGTTGTAACACAGATGTCTGTTGACCAGTCTGCATGTTTTACTATGGAATTGCCTGCAAAAGAGATTGTTCTAGCAGTGGCTCATGATTCTGCAAATATCATTTCATTATTGTCTTCAG............................................................................................................................................................................GTACTTGCTTAATGAAATGTGAAGTCACTTTGCTGCGTGTGACAGTACCCCTGG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0018B07-nGyJi/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E359125" ref_strand="+" ref_description="SGN-E359125 [cLHT-11-L4]">
      <seq>gaagatatactccaagtgccaggaattaattctgctgtgttcaccaaaggaatcttataagaaacagattgatgcaatgcatagtactgccttaaaagttctctcatggttggatagatttcttgataaagttgatatgtctgtggaagagatcacatcatctgcaaagggatttgatattcttatttatcctcaacagcttgttaaggagttcacattatgccaaactttgcccaaatatcagtggggcagtgcaatactagcaggaaacttcgtgtgtcctagctactctaatgtacagaataacacacttgaagaagaattatcatctggaacgactccatctagtgggtctttggtgtgtgtgacttacaagatatatttagccacggaaagggaatgcattatggaacatcttgaagggtctgaagagtttgagtttgagattggcagtggagccgtatctcctgttcttgaagcagttgtaacacagatgtctgttgaccagtctgcatgttttactatggaattgcctgcaaaagagattgttctagcagtggctcatgattctgcaaatatca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0018B07-nGyJi/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02SLe0018B07.1" temp_strand="+" temp_description="C02SLe0018B07.1  AC215448.2 htgs_phase:3 submitted_to_sgn_as:C02SLe0018B07 sequenced_by:kribb upload_account_name:korea">
        <position start="77147" stop="78327"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="77447" g_stop="78027" g_length="581"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="581" r_length="581" r_score="0.991"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLe0018B07.1" gen_strand="+" ref_id="SGN-E359125" ref_strand="+">
        <total_alignment_score>0.991</total_alignment_score>
        <cumulative_length_of_scored_exons>581</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0018B07.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E359125" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="77447" e_stop="78027"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAAGATATACTCCAAGTGCCAGGAATTAATTCTGCTGTGTTCACCAAAGGAATCTTATAAGAAACAGATTGATGCAATGCATAGTACTGCCTTAAAAGTTCTCTCATGGTTGGATAGATTTCTTGATAAAGTTGATATGTCTGTGGAAGAGATCACATCATCTGCAAAGGGATTTGATATTCTTATTTATCCTCAACAGCTTGTTAAGGAGTTCACATTATGTCAAACTTTGCCCAAATATCAGTGGGGCAGTGCAACACTAGCAGGAAACTTCGTGTGTCCTAGCTACTCTAATGTACAGAATAACACACTTGAAGAAGAATTATCATCTGGAACGACTCCATCTAGTGGTTCTTTGGTGTGTGTGACTTACAAGATATATTTAGCCACGGAAAGGGAATGCATTATGGAACATCTTGAAGGGTCTGAAGAGTTTGAGTTTGAGATTGGCAGCGGAGCCGTATCTCCTGTTCTTGAAGCAGTTGTAACACAGATGTCCGTTGACCAGTCTGCATGTTTTACTATGGAATTGCCTGCAAAAGAGATTGTTCTAGCAGTGGCTCATGATTCTGCAAATATCA</genome_strand>
        <mrna_strand>GAAGATATACTCCAAGTGCCAGGAATTAATTCTGCTGTGTTCACCAAAGGAATCTTATAAGAAACAGATTGATGCAATGCATAGTACTGCCTTAAAAGTTCTCTCATGGTTGGATAGATTTCTTGATAAAGTTGATATGTCTGTGGAAGAGATCACATCATCTGCAAAGGGATTTGATATTCTTATTTATCCTCAACAGCTTGTTAAGGAGTTCACATTATGCCAAACTTTGCCCAAATATCAGTGGGGCAGTGCAATACTAGCAGGAAACTTCGTGTGTCCTAGCTACTCTAATGTACAGAATAACACACTTGAAGAAGAATTATCATCTGGAACGACTCCATCTAGTGGGTCTTTGGTGTGTGTGACTTACAAGATATATTTAGCCACGGAAAGGGAATGCATTATGGAACATCTTGAAGGGTCTGAAGAGTTTGAGTTTGAGATTGGCAGTGGAGCCGTATCTCCTGTTCTTGAAGCAGTTGTAACACAGATGTCTGTTGACCAGTCTGCATGTTTTACTATGGAATTGCCTGCAAAAGAGATTGTTCTAGCAGTGGCTCATGATTCTGCAAATATCA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0018B07-nGyJi/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E690301" ref_strand="+" ref_description="SGN-E690301 [LH_Ea03C11]">
      <seq>ttatttcacagagagctcttgctcgtgctgcaaagatacttcattcaaaactcaatggaaatatagaagctgaacaaccaatcaacagtatcaagtctgcaatactatatgatggttcgattttgtcttgtgattctcggttgtgtggatatgatattgcaacctgcttggaggtgattgaacacatggaggaacatgacgcatgtttgtttggggatattgttctccgttcattttgtccacagattcttatagtctccactcccaattatgaatacaatgtgattctccagaaatctactccccagtaccaggaggatgacccagatgagaagagccagcagcagttatgcaaattccgcaatcacgatcacaagtttgagtggactagacatcaattctgtgaatgggcatctgagctagctttaaggcataattatgctgtcgagttcagtggtgttgggggagaagctaacaaagaaccaggatttgcctcccaaattgctgtttttaggagaaacgatagcagtcccgtgaatgcagattttcctgaacactatgatgttatatgggaatggagtagtgacaataaatagttcattttggttagtgatgtggactccagaagctataggaattccttcatactttgtaatccttacctaaatatgcttgaaattgtagtagtagagatggtctgttgtgaggtcatactcatagttacacacatactatatttttaaataacaccctttgaaaaatatatttaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0018B07-nGyJi/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02SLe0018B07.1" temp_strand="+" temp_description="C02SLe0018B07.1  AC215448.2 htgs_phase:3 submitted_to_sgn_as:C02SLe0018B07 sequenced_by:kribb upload_account_name:korea">
        <position start="78229" stop="81723"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="78528" g_stop="78562" g_length="35"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="35" r_length="35" r_score="0.971"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="78563" i_stop="79633" i_length="1071">
            <donor d_prob="0.997" d_score="0.00"/>
            <acceptor a_prob="0.965" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="79634" g_stop="79771" g_length="138"/>
          <reference_exon_boundary r_type="cDNA" r_start="36" r_stop="173" r_length="138" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="79772" i_stop="80738" i_length="967">
            <donor d_prob="0.988" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="80739" g_stop="81262" g_length="524"/>
          <reference_exon_boundary r_type="cDNA" r_start="174" r_stop="688" r_length="515" r_score="0.914"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="81263" i_stop="81373" i_length="111">
            <donor d_prob="0.000" d_score="0.82"/>
            <acceptor a_prob="0.750" a_score="0.91"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="81374" g_stop="81417" g_length="44"/>
          <reference_exon_boundary r_type="cDNA" r_start="689" r_stop="732" r_length="44" r_score="0.909"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="769" polyA_stop="779"/>
      <MATCH_line gen_id="C02SLe0018B07.1" gen_strand="+" ref_id="SGN-E690301" ref_strand="+">
        <total_alignment_score>0.932</total_alignment_score>
        <cumulative_length_of_scored_exons>741</cumulative_length_of_scored_exons>
        <coverage percentage="0.951" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0018B07.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E690301" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="78528" e_stop="78562"/>
          <exon e_start="79634" e_stop="79771"/>
          <exon e_start="80739" e_stop="81262"/>
          <exon e_start="81374" e_stop="81417"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATATTTCACAGAGAGCTCTTGCTCGTGCTGCAAAGGTCTGATGCATTCACAGCCCTTTGACACTGCTTTTTTGCTATCCTAATCTCTCTGTAACTGACCTATAACTAATTCTTTTACTGCATTTCTTTTTATTGGCAATGATAATCAGAGCTTGTGCATTTTCTATCTTAACCGTAGGTTTGAAACTGAACCTGTTATTCAAGTGAGAAAATTCAGGAACTGCAATGGTTATCTTCTGTCAATCCAATATTAAGATATTATCTTGTGTCATCAACTAAATCCAATTTAGCCTATAATTTCAGTGTGACATTTTACTATTTGATAGTTAATGACATTATATTTGGATTGTCAAAGCTAGAAAGATGTTTCCTAGGCCAAAATGTCAAGGTCCTTTTACCTGTCAAAAGTATCTATATGAAATATGCACACTGAGGCACGTGTGTCTATTTCCTTGCTATATATATATGTTCATGATATAGGTTTTCTCTATATCCATATTCTGGCATTGGAAGCTCCGAAGTAGATAATATTTTTAATTTGTGGTGGTATATGGTTATAGAGTCTGGAAAAATAGTTTCATGTAATGAATTACATGGAAGTGAAAAAGATCTTTTCTCCTTTTTTTCTTTTTGGAATGGAAAGCAACTTCATACCATCATCAATATCATTGGTTGTTTTTAGACTATCAGAACAGTTAAACTAATGAGGTCAAAAATGTCAGCTCAAGATGCTAAAAAAATTCTGAAGATCTTTAAAAACTACAATTAACTTCTAAATTTTTTGCACTGATGGAGCATAGTTCTATACTTAGTGTCTACCACATGCAGAATGTATATGATGTTGATAGCTTTTAGGACTTCCTCAGTTATCTCTCGAATTAGAGTAGGTGGGAACTGACTTTTGTAAAGTTCCTGGATATGGATACTGAAACACTTTTTAGAACCTGATGTGACCCACTGCAACAATGTATTGTTGCGGTTTTGTTTGTATAAAATGTTAATCATCAAAAGAAGGCCAAAAAGAAGACCAGTCACATGCATTACCGGTCTCAAATTATTATTAGACTTTTATTTATGGTTTCACCTAAGATAATTTTTAACTTCCAGATACTTCATTCAAAACTCAATGGAAATATAGAAGCTGAACAACCAATCAACAGTATCAAGTCTGCAATACTATATGATGGTTCGATTTTGTCTTGTGATTCTCGGTTGTGTGGATATGATATTGCAACCTGCTTGGAGGTAATCAGTTTCTCTTCTATTGATTGTTACATAGCTTTTAAGATGTTGTACTGATTTTTTTTTTCTTTAAAAAGATCAACTTCCGGGCATTTCGAGTTTCATGAAATATTTGTGTAAAACTGCTGATGAACTTTATATCCATCCTCAAAATGAAGTCTATGGCTGGTTATATGTACAGTATTTTTCATTGAAGCAACTGAGTTGATCGGTGAACTCTGTGATATGATCTGTCAACTTGATCGCTATAGATGGTTTAGTGTGTTAGATATCATGTACTCGTGTATTAGTATTTGAGGTCAGAAGGTAGATATTCTGGAGCAGTAAATAGTATGTGATCTGAAGTGTTTATTCAGAGGAAGCCGTTTTCTGAACCTTGCCATTATCTTAAGTTAGAGGCTGGTGTAAGTGGCATCTTCAAAACTTGTATGTATTTGATTTATAGCAGAGAGCAGACAGGTTTTTCTGCTTCCTTGACATCTGAAAACTGGCAGAGATATGGCACGTTCATTCGCCTACCAGAAGAGTACAGAGCTTAGCACTCATTACGAGGGAGGAAGGGAGGGAGGGGAAATTAGAAACTGAGTTTTCATTATGGGTATAGTGCTGGCAGATTTCTTCAATATTTCTACTCCTATGTGATGAACTATATTGGAGCGGGTGGTTCTTATCGTTATGATTGGTTCAATTTAATTTGTTTTAGTTTCACTATGAATAATGATGTGATGATATTTTCTAGTAGTTCAGTAGTGTCTAACCACTTAAAACACATAATCTCTAAGTTTGAAGAAATTAGTCTTGCTAGGGAGGTGAGTGATGCATCAATGATGCTTCCAACGTTCTTTATTGGCACTTATGTTGTGTTAAGTGTGATATTTTCTGCATTATATATTTTTGGATTCTGTCTTTTCTTTCCTCCATAGAATCTTTATAGCATTAACACATAGCTGGGAATTTTGATCAACTATAGGTGATTGAACACATGGAGGAACAGGACGCATGTTTGTTTGGGGATATTGTTCTCCGTTCATTTTGTCCACAGATTCTTATAGTCTCCACTCCCAATTATGAATACAATGTGATTCTCCAGAAATCTACTCCCCAATACCAGGAGGATGACCCAGATGAGAAGAGCCAGCAGCAGTTATGCAAATTCCGCAATCACGATCACAAGTTTGAGTGGACTAGACAGCAGTTCTGTGAATGGGCATCTGAGCTAGCTTTAAGGCATAATTATGATGTCGTGTTCAGTGGTGTTGGGGGAGAAGCTAACAAAGAACCAGGATTTGCCTCCCAAATTGCTGTTTTTAGAAGAAACGATCGCAGTCCCGTGAATGCAGATTTTCCTGAACACTATGATGTTATATGGGAATGGAGTAGTGACAATAAATAGTTGATGATTTTAACAACAGTTCATTTTGGTTAGTGATGTGGACTCCAGAAGCTATAGGAATTTTGTAATCCTTACCTAAATATGCTTGAAATTGTAGTAGAAATTATATACATTGCTTAGAAAGGTACAAACAATACTCCTTAACTCATGACTAGAAAGTTTTATACTTGAACTTTAGTTTTGTTCCATTTTTCTCTAACCTTCACTTGTAGAGATATGGTATGTTGTGAGGTCATACTCATAGTTACAGACAGAC</genome_strand>
        <mrna_strand>TTATTTCACAGAGAGCTCTTGCTCGTGCTGCAAAG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATACTTCATTCAAAACTCAATGGAAATATAGAAGCTGAACAACCAATCAACAGTATCAAGTCTGCAATACTATATGATGGTTCGATTTTGTCTTGTGATTCTCGGTTGTGTGGATATGATATTGCAACCTGCTTGGAG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGATTGAACACATGGAGGAACATGACGCATGTTTGTTTGGGGATATTGTTCTCCGTTCATTTTGTCCACAGATTCTTATAGTCTCCACTCCCAATTATGAATACAATGTGATTCTCCAGAAATCTACTCCCCAGTACCAGGAGGATGACCCAGATGAGAAGAGCCAGCAGCAGTTATGCAAATTCCGCAATCACGATCACAAGTTTGAGTGGACTAGACATCAATTCTGTGAATGGGCATCTGAGCTAGCTTTAAGGCATAATTATGCTGTCGAGTTCAGTGGTGTTGGGGGAGAAGCTAACAAAGAACCAGGATTTGCCTCCCAAATTGCTGTTTTTAGGAGAAACGATAGCAGTCCCGTGAATGCAGATTTTCCTGAACACTATGATGTTATATGGGAATGGAGTAGTGACAATAAATAG-T--TCATTTT--GGTTAG-TGATGTGGACTCCAGAAG-CTA-T-AGGAATTCCTTCATACTTTGTAATCCTTACCTAAATATGCTTGAAATTGTAGTAGT...............................................................................................................AGAGATGGTCTGTTGTGAGGTCATACTCATAGTTACACACATAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0018B07-nGyJi/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E694141" ref_strand="+" ref_description="SGN-E694141 [LH_Ea03C11](-)">
      <seq>atatttcacagagagctcttgctcgtgctgcaaagatacttcattcaaaactcaatggaaatatagaagctgaacaaccaatcaacagtatcaagtctgcaatactatatgatggttcgattttgtcttgtgattctcggttgtgtggatatgatattgcaacctgcttggaggtgattgaacacatggaggaacatgacgcatgtttgtttggggatattgttctccgttcattttgtccacagattcttatagtctccactcccaattatgaatacaatgtgattctccagaaatctactccccagtaccaggaggatgacccagatgagaagagccagcagcagttatgcaaattccgcaatcacgatcacaagtttgagtggactagacatcaattctgtgaatgggcatctgagctagctttaaggcataattatgctgtcgagttcagtggtgttgggggagaagctaacaaagaaccaggatttgcctcccaaattgctgtttttaggagaaacgatagcagtcccgtgaatgcagattttcctgaacactatgatgttatatgggaatggagtagtgacaataaatagttcattttggttagtgatgtggactccagaagctataggaattccttcatactttgtaatccttacctaaatatgcttgaaattgtagtagtagagatggtctgttgtgaggtcatactcatagttacacacatactatatttttaaataacacccttgaaaaatatatttaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0018B07-nGyJi/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02SLe0018B07.1" temp_strand="+" temp_description="C02SLe0018B07.1  AC215448.2 htgs_phase:3 submitted_to_sgn_as:C02SLe0018B07 sequenced_by:kribb upload_account_name:korea">
        <position start="78228" stop="81723"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="78528" g_stop="78562" g_length="35"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="35" r_length="35" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="78563" i_stop="79633" i_length="1071">
            <donor d_prob="0.997" d_score="0.00"/>
            <acceptor a_prob="0.965" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="79634" g_stop="79771" g_length="138"/>
          <reference_exon_boundary r_type="cDNA" r_start="36" r_stop="173" r_length="138" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="79772" i_stop="80738" i_length="967">
            <donor d_prob="0.988" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="80739" g_stop="81262" g_length="524"/>
          <reference_exon_boundary r_type="cDNA" r_start="174" r_stop="688" r_length="515" r_score="0.914"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="81263" i_stop="81373" i_length="111">
            <donor d_prob="0.000" d_score="0.82"/>
            <acceptor a_prob="0.750" a_score="0.91"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="81374" g_stop="81417" g_length="44"/>
          <reference_exon_boundary r_type="cDNA" r_start="689" r_stop="732" r_length="44" r_score="0.909"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="768" polyA_stop="784"/>
      <MATCH_line gen_id="C02SLe0018B07.1" gen_strand="+" ref_id="SGN-E694141" ref_strand="+">
        <total_alignment_score>0.932</total_alignment_score>
        <cumulative_length_of_scored_exons>741</cumulative_length_of_scored_exons>
        <coverage percentage="0.945" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0018B07.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E694141" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="78528" e_stop="78562"/>
          <exon e_start="79634" e_stop="79771"/>
          <exon e_start="80739" e_stop="81262"/>
          <exon e_start="81374" e_stop="81417"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATATTTCACAGAGAGCTCTTGCTCGTGCTGCAAAGGTCTGATGCATTCACAGCCCTTTGACACTGCTTTTTTGCTATCCTAATCTCTCTGTAACTGACCTATAACTAATTCTTTTACTGCATTTCTTTTTATTGGCAATGATAATCAGAGCTTGTGCATTTTCTATCTTAACCGTAGGTTTGAAACTGAACCTGTTATTCAAGTGAGAAAATTCAGGAACTGCAATGGTTATCTTCTGTCAATCCAATATTAAGATATTATCTTGTGTCATCAACTAAATCCAATTTAGCCTATAATTTCAGTGTGACATTTTACTATTTGATAGTTAATGACATTATATTTGGATTGTCAAAGCTAGAAAGATGTTTCCTAGGCCAAAATGTCAAGGTCCTTTTACCTGTCAAAAGTATCTATATGAAATATGCACACTGAGGCACGTGTGTCTATTTCCTTGCTATATATATATGTTCATGATATAGGTTTTCTCTATATCCATATTCTGGCATTGGAAGCTCCGAAGTAGATAATATTTTTAATTTGTGGTGGTATATGGTTATAGAGTCTGGAAAAATAGTTTCATGTAATGAATTACATGGAAGTGAAAAAGATCTTTTCTCCTTTTTTTCTTTTTGGAATGGAAAGCAACTTCATACCATCATCAATATCATTGGTTGTTTTTAGACTATCAGAACAGTTAAACTAATGAGGTCAAAAATGTCAGCTCAAGATGCTAAAAAAATTCTGAAGATCTTTAAAAACTACAATTAACTTCTAAATTTTTTGCACTGATGGAGCATAGTTCTATACTTAGTGTCTACCACATGCAGAATGTATATGATGTTGATAGCTTTTAGGACTTCCTCAGTTATCTCTCGAATTAGAGTAGGTGGGAACTGACTTTTGTAAAGTTCCTGGATATGGATACTGAAACACTTTTTAGAACCTGATGTGACCCACTGCAACAATGTATTGTTGCGGTTTTGTTTGTATAAAATGTTAATCATCAAAAGAAGGCCAAAAAGAAGACCAGTCACATGCATTACCGGTCTCAAATTATTATTAGACTTTTATTTATGGTTTCACCTAAGATAATTTTTAACTTCCAGATACTTCATTCAAAACTCAATGGAAATATAGAAGCTGAACAACCAATCAACAGTATCAAGTCTGCAATACTATATGATGGTTCGATTTTGTCTTGTGATTCTCGGTTGTGTGGATATGATATTGCAACCTGCTTGGAGGTAATCAGTTTCTCTTCTATTGATTGTTACATAGCTTTTAAGATGTTGTACTGATTTTTTTTTTCTTTAAAAAGATCAACTTCCGGGCATTTCGAGTTTCATGAAATATTTGTGTAAAACTGCTGATGAACTTTATATCCATCCTCAAAATGAAGTCTATGGCTGGTTATATGTACAGTATTTTTCATTGAAGCAACTGAGTTGATCGGTGAACTCTGTGATATGATCTGTCAACTTGATCGCTATAGATGGTTTAGTGTGTTAGATATCATGTACTCGTGTATTAGTATTTGAGGTCAGAAGGTAGATATTCTGGAGCAGTAAATAGTATGTGATCTGAAGTGTTTATTCAGAGGAAGCCGTTTTCTGAACCTTGCCATTATCTTAAGTTAGAGGCTGGTGTAAGTGGCATCTTCAAAACTTGTATGTATTTGATTTATAGCAGAGAGCAGACAGGTTTTTCTGCTTCCTTGACATCTGAAAACTGGCAGAGATATGGCACGTTCATTCGCCTACCAGAAGAGTACAGAGCTTAGCACTCATTACGAGGGAGGAAGGGAGGGAGGGGAAATTAGAAACTGAGTTTTCATTATGGGTATAGTGCTGGCAGATTTCTTCAATATTTCTACTCCTATGTGATGAACTATATTGGAGCGGGTGGTTCTTATCGTTATGATTGGTTCAATTTAATTTGTTTTAGTTTCACTATGAATAATGATGTGATGATATTTTCTAGTAGTTCAGTAGTGTCTAACCACTTAAAACACATAATCTCTAAGTTTGAAGAAATTAGTCTTGCTAGGGAGGTGAGTGATGCATCAATGATGCTTCCAACGTTCTTTATTGGCACTTATGTTGTGTTAAGTGTGATATTTTCTGCATTATATATTTTTGGATTCTGTCTTTTCTTTCCTCCATAGAATCTTTATAGCATTAACACATAGCTGGGAATTTTGATCAACTATAGGTGATTGAACACATGGAGGAACAGGACGCATGTTTGTTTGGGGATATTGTTCTCCGTTCATTTTGTCCACAGATTCTTATAGTCTCCACTCCCAATTATGAATACAATGTGATTCTCCAGAAATCTACTCCCCAATACCAGGAGGATGACCCAGATGAGAAGAGCCAGCAGCAGTTATGCAAATTCCGCAATCACGATCACAAGTTTGAGTGGACTAGACAGCAGTTCTGTGAATGGGCATCTGAGCTAGCTTTAAGGCATAATTATGATGTCGTGTTCAGTGGTGTTGGGGGAGAAGCTAACAAAGAACCAGGATTTGCCTCCCAAATTGCTGTTTTTAGAAGAAACGATCGCAGTCCCGTGAATGCAGATTTTCCTGAACACTATGATGTTATATGGGAATGGAGTAGTGACAATAAATAGTTGATGATTTTAACAACAGTTCATTTTGGTTAGTGATGTGGACTCCAGAAGCTATAGGAATTTTGTAATCCTTACCTAAATATGCTTGAAATTGTAGTAGAAATTATATACATTGCTTAGAAAGGTACAAACAATACTCCTTAACTCATGACTAGAAAGTTTTATACTTGAACTTTAGTTTTGTTCCATTTTTCTCTAACCTTCACTTGTAGAGATATGGTATGTTGTGAGGTCATACTCATAGTTACAGACAGAC</genome_strand>
        <mrna_strand>ATATTTCACAGAGAGCTCTTGCTCGTGCTGCAAAG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATACTTCATTCAAAACTCAATGGAAATATAGAAGCTGAACAACCAATCAACAGTATCAAGTCTGCAATACTATATGATGGTTCGATTTTGTCTTGTGATTCTCGGTTGTGTGGATATGATATTGCAACCTGCTTGGAG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGATTGAACACATGGAGGAACATGACGCATGTTTGTTTGGGGATATTGTTCTCCGTTCATTTTGTCCACAGATTCTTATAGTCTCCACTCCCAATTATGAATACAATGTGATTCTCCAGAAATCTACTCCCCAGTACCAGGAGGATGACCCAGATGAGAAGAGCCAGCAGCAGTTATGCAAATTCCGCAATCACGATCACAAGTTTGAGTGGACTAGACATCAATTCTGTGAATGGGCATCTGAGCTAGCTTTAAGGCATAATTATGCTGTCGAGTTCAGTGGTGTTGGGGGAGAAGCTAACAAAGAACCAGGATTTGCCTCCCAAATTGCTGTTTTTAGGAGAAACGATAGCAGTCCCGTGAATGCAGATTTTCCTGAACACTATGATGTTATATGGGAATGGAGTAGTGACAATAAATAG-T--TCATTTT--GGTTAG-TGATGTGGACTCCAGAAG-CTA-T-AGGAATTCCTTCATACTTTGTAATCCTTACCTAAATATGCTTGAAATTGTAGTAGT...............................................................................................................AGAGATGGTCTGTTGTGAGGTCATACTCATAGTTACACACATAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0018B07-nGyJi/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E545972" ref_strand="+" ref_description="SGN-E545972 [TUS-69-B14](-)">
      <seq>ggaggtgattgaacacatggaggaacccgacgcatgtttgtttggggatattgttctccgttcattttgtccacagattcttatagtctccactcccaattatgaatacaatgtgattctccagaaatctactccacagtaccaggaggatgacccagatgagaagagccagcagcagttatgcaaattccgcaatcacgatcacaagtttgagtggactagacagcaattctgtgaatgggcatctgatctagctttaaggcataattatgctgtcgagttcagtggtgttgggggagaagctaacaaagaaccaggatttgcctcccaaattgctgtttttagaagaaacgatagcagtcccgtgaatgcagattttcctgaacactatgatgttatatgggaatggagtagtgacaataaatagttcattttggttagtgatgtggactccagaagctataggaattccttcatactttgtaatctttacctaaatatgcttgaaattgtagtagtagagatggtctgttgtgaggtcatactcatagttacagacacactatatttttatataacacccttcaaaaatatatttagttgacttttacccccttttagaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0018B07-nGyJi/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02SLe0018B07.1" temp_strand="+" temp_description="C02SLe0018B07.1  AC215448.2 htgs_phase:3 submitted_to_sgn_as:C02SLe0018B07 sequenced_by:kribb upload_account_name:korea">
        <position start="80437" stop="81723"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="80574" g_stop="80577" g_length="4"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="4" r_length="4" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="80578" i_stop="80738" i_length="161">
            <donor d_prob="0.720" d_score="0.00"/>
            <acceptor a_prob="0.995" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="80739" g_stop="81262" g_length="524"/>
          <reference_exon_boundary r_type="cDNA" r_start="5" r_stop="519" r_length="515" r_score="0.910"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="81263" i_stop="81373" i_length="111">
            <donor d_prob="0.000" d_score="0.80"/>
            <acceptor a_prob="0.750" a_score="0.93"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="81374" g_stop="81417" g_length="44"/>
          <reference_exon_boundary r_type="cDNA" r_start="520" r_stop="563" r_length="44" r_score="0.932"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLe0018B07.1" gen_strand="+" ref_id="SGN-E545972" ref_strand="+">
        <total_alignment_score>0.910</total_alignment_score>
        <cumulative_length_of_scored_exons>572</cumulative_length_of_scored_exons>
        <coverage percentage="0.915" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0018B07.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E545972" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="80574" e_stop="80577"/>
          <exon e_start="80739" e_stop="81262"/>
          <exon e_start="81374" e_stop="81417"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGAGGTGAGTGATGCATCAATGATGCTTCCAACGTTCTTTATTGGCACTTATGTTGTGTTAAGTGTGATATTTTCTGCATTATATATTTTTGGATTCTGTCTTTTCTTTCCTCCATAGAATCTTTATAGCATTAACACATAGCTGGGAATTTTGATCAACTATAGGTGATTGAACACATGGAGGAACAGGACGCATGTTTGTTTGGGGATATTGTTCTCCGTTCATTTTGTCCACAGATTCTTATAGTCTCCACTCCCAATTATGAATACAATGTGATTCTCCAGAAATCTACTCCCCAATACCAGGAGGATGACCCAGATGAGAAGAGCCAGCAGCAGTTATGCAAATTCCGCAATCACGATCACAAGTTTGAGTGGACTAGACAGCAGTTCTGTGAATGGGCATCTGAGCTAGCTTTAAGGCATAATTATGATGTCGTGTTCAGTGGTGTTGGGGGAGAAGCTAACAAAGAACCAGGATTTGCCTCCCAAATTGCTGTTTTTAGAAGAAACGATCGCAGTCCCGTGAATGCAGATTTTCCTGAACACTATGATGTTATATGGGAATGGAGTAGTGACAATAAATAGTTGATGATTTTAACAACAGTTCATTTTGGTTAGTGATGTGGACTCCAGAAGCTATAGGAATTTTGTAATCCTTACCTAAATATGCTTGAAATTGTAGTAGAAATTATATACATTGCTTAGAAAGGTACAAACAATACTCCTTAACTCATGACTAGAAAGTTTTATACTTGAACTTTAGTTTTGTTCCATTTTTCTCTAACCTTCACTTGTAGAGATATGGTATGTTGTGAGGTCATACTCATAGTTACAGACAGAC</genome_strand>
        <mrna_strand>GGAG.................................................................................................................................................................GTGATTGAACACATGGAGGAACCCGACGCATGTTTGTTTGGGGATATTGTTCTCCGTTCATTTTGTCCACAGATTCTTATAGTCTCCACTCCCAATTATGAATACAATGTGATTCTCCAGAAATCTACTCCACAGTACCAGGAGGATGACCCAGATGAGAAGAGCCAGCAGCAGTTATGCAAATTCCGCAATCACGATCACAAGTTTGAGTGGACTAGACAGCAATTCTGTGAATGGGCATCTGATCTAGCTTTAAGGCATAATTATGCTGTCGAGTTCAGTGGTGTTGGGGGAGAAGCTAACAAAGAACCAGGATTTGCCTCCCAAATTGCTGTTTTTAGAAGAAACGATAGCAGTCCCGTGAATGCAGATTTTCCTGAACACTATGATGTTATATGGGAATGGAGTAGTGACAATAAATAG-T--TCATTTT--GGTTAG-TGATGTGGACTCCAGAAG-CTA-T-AGGAATTCCTTCATACTTTGTAATCTTTACCTAAATATGCTTGAAATTGTAGTAGT...............................................................................................................AGAGATGGTCTGTTGTGAGGTCATACTCATAGTTACAGACACAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0018B07-nGyJi/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E717686" ref_strand="+" ref_description="SGN-E717686 [FC02BG10]">
      <seq>ttttaacatttattcccttccacgtttgtattagggtcttattaaatactttttttaatttattctgggtttgtattaggatctcactaaatttaaattcatatgataaaattacacattaagatcacttcatattcagaatcgaatatgagatctttggtttaagaacgaagaaatacttacaaattaacaggttatttgttcgttcaatagtcctaacttccttcgatggagaatgaaaaagataaacttcatgttgtgatgtttccatggctagccatgggacatatcatacctttttttcatctatcaaagtgtttagcacgaaggggccatagagtcaccttcatttcaactccaagaaacattgaaagagtcgtcaataaagttccctctgatcttgctcatctgttgcatattgggtggtttcaattgcctaaagttgaaaacttgccggatgatgcagagtcatcgatggatattccttaccaaaaagctcagttcttgaagatagctttcgattcgctcgaaatcccactgaccaattatcttgagagttcatcaaatcccaaaccagattggattgtctatgactatgcttctcactggctacctcaaattgcaggtaaattaggcgtttctcgcgccttttttagtctgtttactgctgcaaccatgtcattttatggacctccttgtgctttgttaaatgatgaaaggtcaatagctgaggactatacagttgttccaaaatggattc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0018B07-nGyJi/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02SLe0018B07.1" temp_strand="+" temp_description="C02SLe0018B07.1  AC215448.2 htgs_phase:3 submitted_to_sgn_as:C02SLe0018B07 sequenced_by:kribb upload_account_name:korea">
        <position start="86093" stop="87452"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="86393" g_stop="87152" g_length="760"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="760" r_length="760" r_score="0.993"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLe0018B07.1" gen_strand="+" ref_id="SGN-E717686" ref_strand="+">
        <total_alignment_score>0.993</total_alignment_score>
        <cumulative_length_of_scored_exons>760</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0018B07.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E717686" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="86393" e_stop="87152"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTTAACATTTATTTCATTCCACGTTTGTATTAGGGTCTTATTAAATACTTTTTTTAATTTATTCTGTGTTTGTATTAGGATCTCACTAAATTTAAATTCATATGATAAAATTACACATTAAGATCACTTCATATTCAGAATCGAATATGAGATCTTTGGTTTAAGAACGAAGAAATACTTATAAATTAACAGGTTATTTGTTCGTTCAATAGTCCTAACTTCCTTCGATGGAGAATGAAAAAGATAAACTTCATGTTGTGATGTTTCCATGGCTAGCCATGGGACATATCATACCTTTTTTTCATCTATCAAAGTGTTTAGCACGAAGGGGCCATAGAGTCACCTTCATTTCAACTCCAAGAAACATTGAAAGAGTCGTCAATAAAGTTCCCTCTGATCTTGCTCATCTGTTGCATATTGTGTGGTTTCAATTGCCTAAAGTTGAAAACTTGCCGGATGATGCAGAGTCATCGATGGATATTCCTTACCAAAAAGCTCAGTTCTTGAAGATAGCTTTCGATTCGCTCGAAATCCCACTGACCAATTATCTTGAGAGTTCATCAAATCCCAAACCAGATTGGATTGTCTATGACTATGCTTCTCACTGGCTACCTCAAATTGCAGGTAAATTAGGCGTTTCTCGCGCCTTTTTTAGTCTGTTTACTGCTGCAACCATGTCATTTTATGGACCTCCTTGTGCTTTGTTAAATGATGAAAGGTCAATAGCTGAGGACTATACAGTTGTTCCAAAATGGATTC</genome_strand>
        <mrna_strand>TTTTAACATTTATTCCCTTCCACGTTTGTATTAGGGTCTTATTAAATACTTTTTTTAATTTATTCTGGGTTTGTATTAGGATCTCACTAAATTTAAATTCATATGATAAAATTACACATTAAGATCACTTCATATTCAGAATCGAATATGAGATCTTTGGTTTAAGAACGAAGAAATACTTACAAATTAACAGGTTATTTGTTCGTTCAATAGTCCTAACTTCCTTCGATGGAGAATGAAAAAGATAAACTTCATGTTGTGATGTTTCCATGGCTAGCCATGGGACATATCATACCTTTTTTTCATCTATCAAAGTGTTTAGCACGAAGGGGCCATAGAGTCACCTTCATTTCAACTCCAAGAAACATTGAAAGAGTCGTCAATAAAGTTCCCTCTGATCTTGCTCATCTGTTGCATATTGGGTGGTTTCAATTGCCTAAAGTTGAAAACTTGCCGGATGATGCAGAGTCATCGATGGATATTCCTTACCAAAAAGCTCAGTTCTTGAAGATAGCTTTCGATTCGCTCGAAATCCCACTGACCAATTATCTTGAGAGTTCATCAAATCCCAAACCAGATTGGATTGTCTATGACTATGCTTCTCACTGGCTACCTCAAATTGCAGGTAAATTAGGCGTTTCTCGCGCCTTTTTTAGTCTGTTTACTGCTGCAACCATGTCATTTTATGGACCTCCTTGTGCTTTGTTAAATGATGAAAGGTCAATAGCTGAGGACTATACAGTTGTTCCAAAATGGATTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0018B07-nGyJi/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E700902" ref_strand="+" ref_description="SGN-E700902 [FA14BH12]">
      <seq>tgagatctttggtttaagaacgaagaaatacttataaattaacaggttatttgttcgttcaatagtcctaacttccttcgatggagaatgaaaaagataaacttcatgttgtgatgtttccatggctagccatgggacatatcatacctttttttcatctatcaaagtgtttagcacgaaggggccatagagtcaccttcatttcaactccaagaaacattgaaagagtcgtcaataaagttccctctgatcttgctcatctgttgcatattgtgtggtttcaattgcctaaagttgaaaacttgccggatgatgcagagtcatcgatggatattccttaccaaaaagctcagttcttgaagatagctttcgattcgctcgaaatcccactgaccaattatcttgagagttcatcaaatcccaaaccagattggattgtctatgactatgcttctcactggctacctcaaattgcaggtaaattaggcgtttctcgcgccttttttagtctgtttactgctgcaaccatgtcattttatggacctccttgtgctttgttaaatgatgaaaggtcaatagctgaggactatacagttgttccaaaatggattcctttcgaaacgaaagttgtgtataggctgcatgagattaagaagaatttcgaagcaccagctgatgaatcaggtacatctgatggagccagatttggtgcttcaattgatgcaagtgatgtcatattgtttcgaaattgtgttgagtttgaatccgaatggttcagcttggtttctgagctttatcagaaacctattaatatccattggtgttctacctccatctgttgtagttgatcaagaac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0018B07-nGyJi/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02SLe0018B07.1" temp_strand="+" temp_description="C02SLe0018B07.1  AC215448.2 htgs_phase:3 submitted_to_sgn_as:C02SLe0018B07 sequenced_by:kribb upload_account_name:korea">
        <position start="86241" stop="87695"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="86541" g_stop="87395" g_length="855"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="856" r_length="856" r_score="0.996"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLe0018B07.1" gen_strand="+" ref_id="SGN-E700902" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>855</cumulative_length_of_scored_exons>
        <coverage percentage="0.999" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0018B07.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E700902" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="86541" e_stop="87395"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGAGATCTTTGGTTTAAGAACGAAGAAATACTTATAAATTAACAGGTTATTTGTTCGTTCAATAGTCCTAACTTCCTTCGATGGAGAATGAAAAAGATAAACTTCATGTTGTGATGTTTCCATGGCTAGCCATGGGACATATCATACCTTTTTTTCATCTATCAAAGTGTTTAGCACGAAGGGGCCATAGAGTCACCTTCATTTCAACTCCAAGAAACATTGAAAGAGTCGTCAATAAAGTTCCCTCTGATCTTGCTCATCTGTTGCATATTGTGTGGTTTCAATTGCCTAAAGTTGAAAACTTGCCGGATGATGCAGAGTCATCGATGGATATTCCTTACCAAAAAGCTCAGTTCTTGAAGATAGCTTTCGATTCGCTCGAAATCCCACTGACCAATTATCTTGAGAGTTCATCAAATCCCAAACCAGATTGGATTGTCTATGACTATGCTTCTCACTGGCTACCTCAAATTGCAGGTAAATTAGGCGTTTCTCGCGCCTTTTTTAGTCTGTTTACTGCTGCAACCATGTCATTTTATGGACCTCCTTGTGCTTTGTTAAATGATGAAAGGTCAATAGCTGAGGACTATACAGTTGTTCCAAAATGGATTCCTTTCGAAACGAAAGTTGTGTATAGGCTGCATGAGATTAAGAAGAATTTCGAAGCACCAGCTGATGAATCAGGTACATCTGATGGAGCCAGATTTGGTGCTTCAATTGATGCAAGTGATGTCATATTGTTTCGAAATTGTGTTGAGTTTGAATCCGAATGGTTCAGCTTGGTTTCTGAGCTTTATCAGAAACCTATT-ATATCCATTGGTGTGCTACCTCCATCTGTTGTAGTTGATCAAGAAC</genome_strand>
        <mrna_strand>TGAGATCTTTGGTTTAAGAACGAAGAAATACTTATAAATTAACAGGTTATTTGTTCGTTCAATAGTCCTAACTTCCTTCGATGGAGAATGAAAAAGATAAACTTCATGTTGTGATGTTTCCATGGCTAGCCATGGGACATATCATACCTTTTTTTCATCTATCAAAGTGTTTAGCACGAAGGGGCCATAGAGTCACCTTCATTTCAACTCCAAGAAACATTGAAAGAGTCGTCAATAAAGTTCCCTCTGATCTTGCTCATCTGTTGCATATTGTGTGGTTTCAATTGCCTAAAGTTGAAAACTTGCCGGATGATGCAGAGTCATCGATGGATATTCCTTACCAAAAAGCTCAGTTCTTGAAGATAGCTTTCGATTCGCTCGAAATCCCACTGACCAATTATCTTGAGAGTTCATCAAATCCCAAACCAGATTGGATTGTCTATGACTATGCTTCTCACTGGCTACCTCAAATTGCAGGTAAATTAGGCGTTTCTCGCGCCTTTTTTAGTCTGTTTACTGCTGCAACCATGTCATTTTATGGACCTCCTTGTGCTTTGTTAAATGATGAAAGGTCAATAGCTGAGGACTATACAGTTGTTCCAAAATGGATTCCTTTCGAAACGAAAGTTGTGTATAGGCTGCATGAGATTAAGAAGAATTTCGAAGCACCAGCTGATGAATCAGGTACATCTGATGGAGCCAGATTTGGTGCTTCAATTGATGCAAGTGATGTCATATTGTTTCGAAATTGTGTTGAGTTTGAATCCGAATGGTTCAGCTTGGTTTCTGAGCTTTATCAGAAACCTATTAATATCCATTGGTGTTCTACCTCCATCTGTTGTAGTTGATCAAGAAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0018B07-nGyJi/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E702599" ref_strand="+" ref_description="SGN-E702599 [FA19AG01]">
      <seq>ctttggtttaagaacgaagaaatacttataaattaacaggttatttgttcgttcaatagtcctaacttccttcgatggagaatgaaaaagataaacttcatgttgtgatgtttccatggctagccatgggacatatcatacctttttttcatctatcaaagtgtttagcacgaaggggccatagagtcaccttcatttcaactccaagaaacattgaaagagtcgtcaataaagttccctctgatcttgctcatctgttgcatattgtgtggtttcaattgcctaaagttgaaaacttgccggatgatgcagagtcatcgatggatattccttaccaaaaagctcagttcttgaagatagctttcgattcgctcgaaatcccactgaccaattatcttgagagttcatcaaatcccaaaccagattggattgtctatgactatgcttctcactggctacctcaaattgcaggtaaattaggcgtttctcgcgccttttttagtctgtttactgctgcaaccatgtcattttatggacctccttgtgctttgttaaatgatgaaaggtcaatagctgaggactatacagttgttccaaaatggattcctttcgaaacgaaagttgtgtataggctgcatgagattaagaagaatttcgaagcaccagctgatgaatcaggtacatctgatggagccagatttggtgcttcaattgatgcaagtgatgtcatattgtttcgaaattgtgttgagtttgaatccgaatggttcagcttggtttctgagctttatcagaaacctattatatccattggtgttctacctccatctggtgtagttgatc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0018B07-nGyJi/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02SLe0018B07.1" temp_strand="+" temp_description="C02SLe0018B07.1  AC215448.2 htgs_phase:3 submitted_to_sgn_as:C02SLe0018B07 sequenced_by:kribb upload_account_name:korea">
        <position start="86247" stop="87689"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="86547" g_stop="87389" g_length="843"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="843" r_length="843" r_score="0.998"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLe0018B07.1" gen_strand="+" ref_id="SGN-E702599" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>843</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0018B07.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E702599" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="86547" e_stop="87389"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTTTGGTTTAAGAACGAAGAAATACTTATAAATTAACAGGTTATTTGTTCGTTCAATAGTCCTAACTTCCTTCGATGGAGAATGAAAAAGATAAACTTCATGTTGTGATGTTTCCATGGCTAGCCATGGGACATATCATACCTTTTTTTCATCTATCAAAGTGTTTAGCACGAAGGGGCCATAGAGTCACCTTCATTTCAACTCCAAGAAACATTGAAAGAGTCGTCAATAAAGTTCCCTCTGATCTTGCTCATCTGTTGCATATTGTGTGGTTTCAATTGCCTAAAGTTGAAAACTTGCCGGATGATGCAGAGTCATCGATGGATATTCCTTACCAAAAAGCTCAGTTCTTGAAGATAGCTTTCGATTCGCTCGAAATCCCACTGACCAATTATCTTGAGAGTTCATCAAATCCCAAACCAGATTGGATTGTCTATGACTATGCTTCTCACTGGCTACCTCAAATTGCAGGTAAATTAGGCGTTTCTCGCGCCTTTTTTAGTCTGTTTACTGCTGCAACCATGTCATTTTATGGACCTCCTTGTGCTTTGTTAAATGATGAAAGGTCAATAGCTGAGGACTATACAGTTGTTCCAAAATGGATTCCTTTCGAAACGAAAGTTGTGTATAGGCTGCATGAGATTAAGAAGAATTTCGAAGCACCAGCTGATGAATCAGGTACATCTGATGGAGCCAGATTTGGTGCTTCAATTGATGCAAGTGATGTCATATTGTTTCGAAATTGTGTTGAGTTTGAATCCGAATGGTTCAGCTTGGTTTCTGAGCTTTATCAGAAACCTATTATATCCATTGGTGTGCTACCTCCATCTGTTGTAGTTGATC</genome_strand>
        <mrna_strand>CTTTGGTTTAAGAACGAAGAAATACTTATAAATTAACAGGTTATTTGTTCGTTCAATAGTCCTAACTTCCTTCGATGGAGAATGAAAAAGATAAACTTCATGTTGTGATGTTTCCATGGCTAGCCATGGGACATATCATACCTTTTTTTCATCTATCAAAGTGTTTAGCACGAAGGGGCCATAGAGTCACCTTCATTTCAACTCCAAGAAACATTGAAAGAGTCGTCAATAAAGTTCCCTCTGATCTTGCTCATCTGTTGCATATTGTGTGGTTTCAATTGCCTAAAGTTGAAAACTTGCCGGATGATGCAGAGTCATCGATGGATATTCCTTACCAAAAAGCTCAGTTCTTGAAGATAGCTTTCGATTCGCTCGAAATCCCACTGACCAATTATCTTGAGAGTTCATCAAATCCCAAACCAGATTGGATTGTCTATGACTATGCTTCTCACTGGCTACCTCAAATTGCAGGTAAATTAGGCGTTTCTCGCGCCTTTTTTAGTCTGTTTACTGCTGCAACCATGTCATTTTATGGACCTCCTTGTGCTTTGTTAAATGATGAAAGGTCAATAGCTGAGGACTATACAGTTGTTCCAAAATGGATTCCTTTCGAAACGAAAGTTGTGTATAGGCTGCATGAGATTAAGAAGAATTTCGAAGCACCAGCTGATGAATCAGGTACATCTGATGGAGCCAGATTTGGTGCTTCAATTGATGCAAGTGATGTCATATTGTTTCGAAATTGTGTTGAGTTTGAATCCGAATGGTTCAGCTTGGTTTCTGAGCTTTATCAGAAACCTATTATATCCATTGGTGTTCTACCTCCATCTGGTGTAGTTGATC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0018B07-nGyJi/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E254676" ref_strand="+" ref_description="SGN-E254676 [cLEG-29-B19]">
      <seq>gggagaatgaaaaagataaacttcatgttgtgatgtttcgatggctagccatgggacatatcatacctttttttcatctatcaaagtgtttagcacgaaggggtcatagagtcaccttcatttcaactccaagaaacattgaaagagtcgtcaataaagttccctctgatcttgctcatctgttgcatattgtgtgttttcatttgcctaaagttgaaaacttgccggatgatgcagagtcatcaatggacataccttaccaaaaagctcagttcttgaagatagctttcgattcgcttgaaatcccattaaccaattatcttgagagttcatcaaatcccaaaccagattggattgtctatgactatgcttctcactggctacctcaaattgcaggtaaattaggcgtttctcgcgcctttttttagtctgtttactgctgcaactatgtcattttatggacctccttgtgctttgttaaatgatga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0018B07-nGyJi/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02SLe0018B07.1" temp_strand="+" temp_description="C02SLe0018B07.1  AC215448.2 htgs_phase:3 submitted_to_sgn_as:C02SLe0018B07 sequenced_by:kribb upload_account_name:korea">
        <position start="86323" stop="87408"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="86622" g_stop="87108" g_length="487"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="488" r_length="488" r_score="0.971"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLe0018B07.1" gen_strand="+" ref_id="SGN-E254676" ref_strand="+">
        <total_alignment_score>0.971</total_alignment_score>
        <cumulative_length_of_scored_exons>487</cumulative_length_of_scored_exons>
        <coverage percentage="0.998" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0018B07.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E254676" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="86622" e_stop="87108"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGGAGAATGAAAAAGATAAACTTCATGTTGTGATGTTTCCATGGCTAGCCATGGGACATATCATACCTTTTTTTCATCTATCAAAGTGTTTAGCACGAAGGGGCCATAGAGTCACCTTCATTTCAACTCCAAGAAACATTGAAAGAGTCGTCAATAAAGTTCCCTCTGATCTTGCTCATCTGTTGCATATTGTGTGGTTTCAATTGCCTAAAGTTGAAAACTTGCCGGATGATGCAGAGTCATCGATGGATATTCCTTACCAAAAAGCTCAGTTCTTGAAGATAGCTTTCGATTCGCTCGAAATCCCACTGACCAATTATCTTGAGAGTTCATCAAATCCCAAACCAGATTGGATTGTCTATGACTATGCTTCTCACTGGCTACCTCAAATTGCAGGTAAATTAGGCGTTTCTCGCGCC-TTTTTTAGTCTGTTTACTGCTGCAACCATGTCATTTTATGGACCTCCTTGTGCTTTGTTAAATGATGA</genome_strand>
        <mrna_strand>GGGAGAATGAAAAAGATAAACTTCATGTTGTGATGTTTCGATGGCTAGCCATGGGACATATCATACCTTTTTTTCATCTATCAAAGTGTTTAGCACGAAGGGGTCATAGAGTCACCTTCATTTCAACTCCAAGAAACATTGAAAGAGTCGTCAATAAAGTTCCCTCTGATCTTGCTCATCTGTTGCATATTGTGTGTTTTCATTTGCCTAAAGTTGAAAACTTGCCGGATGATGCAGAGTCATCAATGGACATACCTTACCAAAAAGCTCAGTTCTTGAAGATAGCTTTCGATTCGCTTGAAATCCCATTAACCAATTATCTTGAGAGTTCATCAAATCCCAAACCAGATTGGATTGTCTATGACTATGCTTCTCACTGGCTACCTCAAATTGCAGGTAAATTAGGCGTTTCTCGCGCCTTTTTTTAGTCTGTTTACTGCTGCAACTATGTCATTTTATGGACCTCCTTGTGCTTTGTTAAATGATGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0018B07-nGyJi/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E263037" ref_strand="+" ref_description="SGN-E263037 [cLEG-59-O24]">
      <seq>gagaatgaaaaagataaacttcatgttgtgatgtttccatggctagccatgggacatatcatacctttttttcatctatcaaagtgtttagcacgaaggggtcatagagtcaccttcatttcaactccaagaaacattgaaagagtcgtcaataaagttccctctgatcttgctcatctgttgcatattgtgtgttttcatttgcctaaagttgaaaacttgccggatgatgcagagtcatcaatggacataccttaccaaaaagctcagttcttgaagatagctttcgattcgcttgaaatcccattaaccaattatcttgagagttcatcaaatcccaaaccagattggattgtctatgactatgcttctcactggctacctcaaattgcaggtaaattaggcgtttctcgcgcctttttttagtctgtttactgctgcaactatgtcattttatggacctccttgtgctttgttaaatgatgaaaggtcaatagctgaggactatacagttgttccaaaatggattcctttcgaaacgaaagttgtgtataggctgcatgagattaagaagaatttcgaagcaccagctgatgaatcaggtacatctgatggagccagatttggtgcttcaattgatgcaagtgatgtcatattgtttcgaaattgtgttgagtttgaatccgaatggntcagcttggtttctgagctttatcagaaactattatatccattggtggtctacctccatctggnntgtagtgatcatgaacaagatgacagcaatggatgcgt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0018B07-nGyJi/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02SLe0018B07.1" temp_strand="+" temp_description="C02SLe0018B07.1  AC215448.2 htgs_phase:3 submitted_to_sgn_as:C02SLe0018B07 sequenced_by:kribb upload_account_name:korea">
        <position start="86324" stop="87716"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="86624" g_stop="87416" g_length="793"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="795" r_length="795" r_score="0.968"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLe0018B07.1" gen_strand="+" ref_id="SGN-E263037" ref_strand="+">
        <total_alignment_score>0.968</total_alignment_score>
        <cumulative_length_of_scored_exons>793</cumulative_length_of_scored_exons>
        <coverage percentage="0.997" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0018B07.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E263037" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="86624" e_stop="87416"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAGAATGAAAAAGATAAACTTCATGTTGTGATGTTTCCATGGCTAGCCATGGGACATATCATACCTTTTTTTCATCTATCAAAGTGTTTAGCACGAAGGGGCCATAGAGTCACCTTCATTTCAACTCCAAGAAACATTGAAAGAGTCGTCAATAAAGTTCCCTCTGATCTTGCTCATCTGTTGCATATTGTGTGGTTTCAATTGCCTAAAGTTGAAAACTTGCCGGATGATGCAGAGTCATCGATGGATATTCCTTACCAAAAAGCTCAGTTCTTGAAGATAGCTTTCGATTCGCTCGAAATCCCACTGACCAATTATCTTGAGAGTTCATCAAATCCCAAACCAGATTGGATTGTCTATGACTATGCTTCTCACTGGCTACCTCAAATTGCAGGTAAATTAGGCGTTTCTCGCGCC-TTTTTTAGTCTGTTTACTGCTGCAACCATGTCATTTTATGGACCTCCTTGTGCTTTGTTAAATGATGAAAGGTCAATAGCTGAGGACTATACAGTTGTTCCAAAATGGATTCCTTTCGAAACGAAAGTTGTGTATAGGCTGCATGAGATTAAGAAGAATTTCGAAGCACCAGCTGATGAATCAGGTACATCTGATGGAGCCAGATTTGGTGCTTCAATTGATGCAAGTGATGTCATATTGTTTCGAAATTGTGTTGAGTTTGAATCCGAATGGTTCAGCTTGGTTTCTGAGCTTTATCAGAAACCTATTATATCCATTGGTGTGCTACCTCCATCT-G-TTGTAGTTGATCAAGAACAAGATGACAGCAAT-GATGCGT</genome_strand>
        <mrna_strand>GAGAATGAAAAAGATAAACTTCATGTTGTGATGTTTCCATGGCTAGCCATGGGACATATCATACCTTTTTTTCATCTATCAAAGTGTTTAGCACGAAGGGGTCATAGAGTCACCTTCATTTCAACTCCAAGAAACATTGAAAGAGTCGTCAATAAAGTTCCCTCTGATCTTGCTCATCTGTTGCATATTGTGTGTTTTCATTTGCCTAAAGTTGAAAACTTGCCGGATGATGCAGAGTCATCAATGGACATACCTTACCAAAAAGCTCAGTTCTTGAAGATAGCTTTCGATTCGCTTGAAATCCCATTAACCAATTATCTTGAGAGTTCATCAAATCCCAAACCAGATTGGATTGTCTATGACTATGCTTCTCACTGGCTACCTCAAATTGCAGGTAAATTAGGCGTTTCTCGCGCCTTTTTTTAGTCTGTTTACTGCTGCAACTATGTCATTTTATGGACCTCCTTGTGCTTTGTTAAATGATGAAAGGTCAATAGCTGAGGACTATACAGTTGTTCCAAAATGGATTCCTTTCGAAACGAAAGTTGTGTATAGGCTGCATGAGATTAAGAAGAATTTCGAAGCACCAGCTGATGAATCAGGTACATCTGATGGAGCCAGATTTGGTGCTTCAATTGATGCAAGTGATGTCATATTGTTTCGAAATTGTGTTGAGTTTGAATCCGAATGGNTCAGCTTGGTTTCTGAGCTTTATCAGAAA-CTATTATATCCATTGGTGGTCTACCTCCATCTGGNNTGTAG-TGATCATGAACAAGATGACAGCAATGGATGCGT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0018B07-nGyJi/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E256435" ref_strand="+" ref_description="SGN-E256435 [cLEG-38-I24]">
      <seq>gagaatgaaaaagataaacttcatgttgtgatgtttccatggctagccatgggacatatcatacctttttttcatctatcaaagtgtttagcacgaaggggtcatagagtcaccttcatttcaactccaagaaacattgaaagagtcgtcaataaagttccctctgatcttgctcatctgttgcatattgtgtgttttcatttgcctaaagttgaaaacttgccggatgatgcagagtcatcaatggacataccttaccaaaaagctcagttcttgaagatagctttcgattcgcttgaaatcccattaaccaattatcttgagagttcatcaaatcccaaaccagattggattgtctatgactatgcttctcactggctacctcaaattgcaggtaaattaggcgtttctcgcgcctttttttagtctgtttactgctgcaactatgtcattttatggacctccttgtgctttgttaaatgatga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0018B07-nGyJi/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02SLe0018B07.1" temp_strand="+" temp_description="C02SLe0018B07.1  AC215448.2 htgs_phase:3 submitted_to_sgn_as:C02SLe0018B07 sequenced_by:kribb upload_account_name:korea">
        <position start="86324" stop="87408"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="86624" g_stop="87108" g_length="485"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="486" r_length="486" r_score="0.975"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLe0018B07.1" gen_strand="+" ref_id="SGN-E256435" ref_strand="+">
        <total_alignment_score>0.975</total_alignment_score>
        <cumulative_length_of_scored_exons>485</cumulative_length_of_scored_exons>
        <coverage percentage="0.998" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0018B07.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E256435" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="86624" e_stop="87108"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAGAATGAAAAAGATAAACTTCATGTTGTGATGTTTCCATGGCTAGCCATGGGACATATCATACCTTTTTTTCATCTATCAAAGTGTTTAGCACGAAGGGGCCATAGAGTCACCTTCATTTCAACTCCAAGAAACATTGAAAGAGTCGTCAATAAAGTTCCCTCTGATCTTGCTCATCTGTTGCATATTGTGTGGTTTCAATTGCCTAAAGTTGAAAACTTGCCGGATGATGCAGAGTCATCGATGGATATTCCTTACCAAAAAGCTCAGTTCTTGAAGATAGCTTTCGATTCGCTCGAAATCCCACTGACCAATTATCTTGAGAGTTCATCAAATCCCAAACCAGATTGGATTGTCTATGACTATGCTTCTCACTGGCTACCTCAAATTGCAGGTAAATTAGGCGTTTCTCGCGCC-TTTTTTAGTCTGTTTACTGCTGCAACCATGTCATTTTATGGACCTCCTTGTGCTTTGTTAAATGATGA</genome_strand>
        <mrna_strand>GAGAATGAAAAAGATAAACTTCATGTTGTGATGTTTCCATGGCTAGCCATGGGACATATCATACCTTTTTTTCATCTATCAAAGTGTTTAGCACGAAGGGGTCATAGAGTCACCTTCATTTCAACTCCAAGAAACATTGAAAGAGTCGTCAATAAAGTTCCCTCTGATCTTGCTCATCTGTTGCATATTGTGTGTTTTCATTTGCCTAAAGTTGAAAACTTGCCGGATGATGCAGAGTCATCAATGGACATACCTTACCAAAAAGCTCAGTTCTTGAAGATAGCTTTCGATTCGCTTGAAATCCCATTAACCAATTATCTTGAGAGTTCATCAAATCCCAAACCAGATTGGATTGTCTATGACTATGCTTCTCACTGGCTACCTCAAATTGCAGGTAAATTAGGCGTTTCTCGCGCCTTTTTTTAGTCTGTTTACTGCTGCAACTATGTCATTTTATGGACCTCCTTGTGCTTTGTTAAATGATGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0018B07-nGyJi/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E258518" ref_strand="+" ref_description="SGN-E258518 [cLEG-47-A16]">
      <seq>gagaatgaaaaagataaacttcatgttgtgatgtttccatggctagccatgggacatatcatacctttttttcatctatcaaagtgtttagcacgaaggggtcatagagtcaccttcatttcaactccaagaaacattgaaagagtcatcaataaagttccctctgatcttgctcatctgttgcatattgtgtgttttcatttgcctaaagttgaaaacttgccggatgatgcagagtcatcaatggacataccttaccaaaaagctcagttcttgaagatagctttcgattcgcttgaaatcccattaaccaattatcttgagagatcatctaatcccaaaccagattggattggctatgactatgcttctcactggctacct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0018B07-nGyJi/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02SLe0018B07.1" temp_strand="+" temp_description="C02SLe0018B07.1  AC215448.2 htgs_phase:3 submitted_to_sgn_as:C02SLe0018B07 sequenced_by:kribb upload_account_name:korea">
        <position start="86324" stop="87307"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="86624" g_stop="87007" g_length="384"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="384" r_length="384" r_score="0.966"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLe0018B07.1" gen_strand="+" ref_id="SGN-E258518" ref_strand="+">
        <total_alignment_score>0.966</total_alignment_score>
        <cumulative_length_of_scored_exons>384</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0018B07.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E258518" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="86624" e_stop="87007"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAGAATGAAAAAGATAAACTTCATGTTGTGATGTTTCCATGGCTAGCCATGGGACATATCATACCTTTTTTTCATCTATCAAAGTGTTTAGCACGAAGGGGCCATAGAGTCACCTTCATTTCAACTCCAAGAAACATTGAAAGAGTCGTCAATAAAGTTCCCTCTGATCTTGCTCATCTGTTGCATATTGTGTGGTTTCAATTGCCTAAAGTTGAAAACTTGCCGGATGATGCAGAGTCATCGATGGATATTCCTTACCAAAAAGCTCAGTTCTTGAAGATAGCTTTCGATTCGCTCGAAATCCCACTGACCAATTATCTTGAGAGTTCATCAAATCCCAAACCAGATTGGATTGTCTATGACTATGCTTCTCACTGGCTACCT</genome_strand>
        <mrna_strand>GAGAATGAAAAAGATAAACTTCATGTTGTGATGTTTCCATGGCTAGCCATGGGACATATCATACCTTTTTTTCATCTATCAAAGTGTTTAGCACGAAGGGGTCATAGAGTCACCTTCATTTCAACTCCAAGAAACATTGAAAGAGTCATCAATAAAGTTCCCTCTGATCTTGCTCATCTGTTGCATATTGTGTGTTTTCATTTGCCTAAAGTTGAAAACTTGCCGGATGATGCAGAGTCATCAATGGACATACCTTACCAAAAAGCTCAGTTCTTGAAGATAGCTTTCGATTCGCTTGAAATCCCATTAACCAATTATCTTGAGAGATCATCTAATCCCAAACCAGATTGGATTGGCTATGACTATGCTTCTCACTGGCTACCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0018B07-nGyJi/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E212667" ref_strand="+" ref_description="SGN-E212667 [cLEC-73-O1]">
      <seq>agaatgaaaaagataaacttcatgttgtgatgtttccatggctagccatgggacatatcatacctttttttcatctatcaaagtgtttagcacgaaggggtcatagagtcaccttcatttcaactccaagaaacattgaaagagtcgtcaataaagttccctctgatcttgctcatctgttgcatattgtgtgttttcatttgcctaaagttgaaaacttgccggatgatgcagagtcatcaatggacataccttaccaaaaagctcagttcttgaagatagctttcgattcgcttgaaatcccattaaccaattatcttgagagttcatcaaatcccaaaccagattggattgtctatgactatgcttctcactggctacctcaaattgcaggtaaattaggcgtttctcgcgccttttttagtctgtttactgctgcaactatgtcattttatggacctccttgtgctttgttaaatgatgaaaggtcaatagctgaggactatacagttgttccaaaatggattcctttcgaaacgaaagttgtgtataggctgcatgagattaagaagaatttcgaagcaccagctgatgaatcaggtacatctgatggagccagatttggtgcttcaattgatgcaagtgatgtcatattgtttcgaaattgtgttgagtttgaatccgaatggttcagcttggtttctgagctttatcagaaactattatatccatt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0018B07-nGyJi/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02SLe0018B07.1" temp_strand="+" temp_description="C02SLe0018B07.1  AC215448.2 htgs_phase:3 submitted_to_sgn_as:C02SLe0018B07 sequenced_by:kribb upload_account_name:korea">
        <position start="86325" stop="87658"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="86625" g_stop="87358" g_length="734"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="733" r_length="733" r_score="0.985"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLe0018B07.1" gen_strand="+" ref_id="SGN-E212667" ref_strand="+">
        <total_alignment_score>0.985</total_alignment_score>
        <cumulative_length_of_scored_exons>734</cumulative_length_of_scored_exons>
        <coverage percentage="1.001" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0018B07.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E212667" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="86625" e_stop="87358"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGAATGAAAAAGATAAACTTCATGTTGTGATGTTTCCATGGCTAGCCATGGGACATATCATACCTTTTTTTCATCTATCAAAGTGTTTAGCACGAAGGGGCCATAGAGTCACCTTCATTTCAACTCCAAGAAACATTGAAAGAGTCGTCAATAAAGTTCCCTCTGATCTTGCTCATCTGTTGCATATTGTGTGGTTTCAATTGCCTAAAGTTGAAAACTTGCCGGATGATGCAGAGTCATCGATGGATATTCCTTACCAAAAAGCTCAGTTCTTGAAGATAGCTTTCGATTCGCTCGAAATCCCACTGACCAATTATCTTGAGAGTTCATCAAATCCCAAACCAGATTGGATTGTCTATGACTATGCTTCTCACTGGCTACCTCAAATTGCAGGTAAATTAGGCGTTTCTCGCGCCTTTTTTAGTCTGTTTACTGCTGCAACCATGTCATTTTATGGACCTCCTTGTGCTTTGTTAAATGATGAAAGGTCAATAGCTGAGGACTATACAGTTGTTCCAAAATGGATTCCTTTCGAAACGAAAGTTGTGTATAGGCTGCATGAGATTAAGAAGAATTTCGAAGCACCAGCTGATGAATCAGGTACATCTGATGGAGCCAGATTTGGTGCTTCAATTGATGCAAGTGATGTCATATTGTTTCGAAATTGTGTTGAGTTTGAATCCGAATGGTTCAGCTTGGTTTCTGAGCTTTATCAGAAACCTATTATATCCATT</genome_strand>
        <mrna_strand>AGAATGAAAAAGATAAACTTCATGTTGTGATGTTTCCATGGCTAGCCATGGGACATATCATACCTTTTTTTCATCTATCAAAGTGTTTAGCACGAAGGGGTCATAGAGTCACCTTCATTTCAACTCCAAGAAACATTGAAAGAGTCGTCAATAAAGTTCCCTCTGATCTTGCTCATCTGTTGCATATTGTGTGTTTTCATTTGCCTAAAGTTGAAAACTTGCCGGATGATGCAGAGTCATCAATGGACATACCTTACCAAAAAGCTCAGTTCTTGAAGATAGCTTTCGATTCGCTTGAAATCCCATTAACCAATTATCTTGAGAGTTCATCAAATCCCAAACCAGATTGGATTGTCTATGACTATGCTTCTCACTGGCTACCTCAAATTGCAGGTAAATTAGGCGTTTCTCGCGCCTTTTTTAGTCTGTTTACTGCTGCAACTATGTCATTTTATGGACCTCCTTGTGCTTTGTTAAATGATGAAAGGTCAATAGCTGAGGACTATACAGTTGTTCCAAAATGGATTCCTTTCGAAACGAAAGTTGTGTATAGGCTGCATGAGATTAAGAAGAATTTCGAAGCACCAGCTGATGAATCAGGTACATCTGATGGAGCCAGATTTGGTGCTTCAATTGATGCAAGTGATGTCATATTGTTTCGAAATTGTGTTGAGTTTGAATCCGAATGGTTCAGCTTGGTTTCTGAGCTTTATCAGAAA-CTATTATATCCATT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0018B07-nGyJi/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E212755" ref_strand="+" ref_description="SGN-E212755 [cLEC-73-F22]">
      <seq>agaatgaaaaagataaacttcatgttgtgatgtttccatggctagccatgggacatatcatacctttttttcatctatcaaagtgtttagcacgaaggggtcatagagtcaccttcatttcaactccaagaaacattgaaagagtcgtcaataaagttccctctgatcttgctcatctgttgcatattgtgtgttttcatttgcctaaagttgaaaacttgccggatgatgcagagtcatcaatggacataccttaccaaaaagctcagttcttgaagatagctttcgattcgcttgaaatcccattaaccaattatcttgagagttcatcaaatcccaaaccagattggattgtctatgactatgcttctcactggctacctcaaattgcaggtaaattacgcgtttctcgcgccttttttagtctgtttactgctgcaactatgtcattttatggacctccttgtgctttgttaaatgatgacaggtcaatagctgaggactatacagttgttccaaaatggattcctttcgaaacgaaagttgtgtataggctgcatgagattaagatgaatttcgaagcaccagctgatgaatcaggtacatctgatgg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0018B07-nGyJi/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02SLe0018B07.1" temp_strand="+" temp_description="C02SLe0018B07.1  AC215448.2 htgs_phase:3 submitted_to_sgn_as:C02SLe0018B07 sequenced_by:kribb upload_account_name:korea">
        <position start="86325" stop="87537"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="86625" g_stop="87237" g_length="613"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="613" r_length="613" r_score="0.979"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLe0018B07.1" gen_strand="+" ref_id="SGN-E212755" ref_strand="+">
        <total_alignment_score>0.979</total_alignment_score>
        <cumulative_length_of_scored_exons>613</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0018B07.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E212755" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="86625" e_stop="87237"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGAATGAAAAAGATAAACTTCATGTTGTGATGTTTCCATGGCTAGCCATGGGACATATCATACCTTTTTTTCATCTATCAAAGTGTTTAGCACGAAGGGGCCATAGAGTCACCTTCATTTCAACTCCAAGAAACATTGAAAGAGTCGTCAATAAAGTTCCCTCTGATCTTGCTCATCTGTTGCATATTGTGTGGTTTCAATTGCCTAAAGTTGAAAACTTGCCGGATGATGCAGAGTCATCGATGGATATTCCTTACCAAAAAGCTCAGTTCTTGAAGATAGCTTTCGATTCGCTCGAAATCCCACTGACCAATTATCTTGAGAGTTCATCAAATCCCAAACCAGATTGGATTGTCTATGACTATGCTTCTCACTGGCTACCTCAAATTGCAGGTAAATTAGGCGTTTCTCGCGCCTTTTTTAGTCTGTTTACTGCTGCAACCATGTCATTTTATGGACCTCCTTGTGCTTTGTTAAATGATGAAAGGTCAATAGCTGAGGACTATACAGTTGTTCCAAAATGGATTCCTTTCGAAACGAAAGTTGTGTATAGGCTGCATGAGATTAAGAAGAATTTCGAAGCACCAGCTGATGAATCAGGTACATCTGATGG</genome_strand>
        <mrna_strand>AGAATGAAAAAGATAAACTTCATGTTGTGATGTTTCCATGGCTAGCCATGGGACATATCATACCTTTTTTTCATCTATCAAAGTGTTTAGCACGAAGGGGTCATAGAGTCACCTTCATTTCAACTCCAAGAAACATTGAAAGAGTCGTCAATAAAGTTCCCTCTGATCTTGCTCATCTGTTGCATATTGTGTGTTTTCATTTGCCTAAAGTTGAAAACTTGCCGGATGATGCAGAGTCATCAATGGACATACCTTACCAAAAAGCTCAGTTCTTGAAGATAGCTTTCGATTCGCTTGAAATCCCATTAACCAATTATCTTGAGAGTTCATCAAATCCCAAACCAGATTGGATTGTCTATGACTATGCTTCTCACTGGCTACCTCAAATTGCAGGTAAATTACGCGTTTCTCGCGCCTTTTTTAGTCTGTTTACTGCTGCAACTATGTCATTTTATGGACCTCCTTGTGCTTTGTTAAATGATGACAGGTCAATAGCTGAGGACTATACAGTTGTTCCAAAATGGATTCCTTTCGAAACGAAAGTTGTGTATAGGCTGCATGAGATTAAGATGAATTTCGAAGCACCAGCTGATGAATCAGGTACATCTGATGG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0018B07-nGyJi/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E376492" ref_strand="+" ref_description="SGN-E376492 [TUS-17-N15]">
      <seq>agaatgaaaaagataaacttcatgttgtgatgtttccatggctagccatgggacatatcatacctttttttcatctatcaaagtgtttagcacgaaggggtcatagagtcaccttcatttcaactccaagaaacattgaaagagtcgtcaataaagttccctctgatcttgctcatctgttgcatattgtgtgttttcatttgcctaaagttgaaaacttgccggatgatgcagagtcatcaatggacataccttaccaaaaagctcagttcttgaagatagctttcgattcgcttgaaatcccattaaccaattatcttgagagttcatcaaatcccaaaccagattggattgtctatgactatgcttctcactggctacctcaaattgcaggtaaattaggcgtttctcgcgccttttttagtctgtttactgctgcaactatgtcattttatggacctccttgtgctttgttaaatgatgaaaggtcaatagctgaggactatacagttgttccaaaatggattcctttttaaacgaaagttgtgtataggctgcatg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0018B07-nGyJi/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02SLe0018B07.1" temp_strand="+" temp_description="C02SLe0018B07.1  AC215448.2 htgs_phase:3 submitted_to_sgn_as:C02SLe0018B07 sequenced_by:kribb upload_account_name:korea">
        <position start="86325" stop="87485"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="86625" g_stop="87185" g_length="561"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="561" r_length="561" r_score="0.979"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLe0018B07.1" gen_strand="+" ref_id="SGN-E376492" ref_strand="+">
        <total_alignment_score>0.979</total_alignment_score>
        <cumulative_length_of_scored_exons>561</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0018B07.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E376492" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="86625" e_stop="87185"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGAATGAAAAAGATAAACTTCATGTTGTGATGTTTCCATGGCTAGCCATGGGACATATCATACCTTTTTTTCATCTATCAAAGTGTTTAGCACGAAGGGGCCATAGAGTCACCTTCATTTCAACTCCAAGAAACATTGAAAGAGTCGTCAATAAAGTTCCCTCTGATCTTGCTCATCTGTTGCATATTGTGTGGTTTCAATTGCCTAAAGTTGAAAACTTGCCGGATGATGCAGAGTCATCGATGGATATTCCTTACCAAAAAGCTCAGTTCTTGAAGATAGCTTTCGATTCGCTCGAAATCCCACTGACCAATTATCTTGAGAGTTCATCAAATCCCAAACCAGATTGGATTGTCTATGACTATGCTTCTCACTGGCTACCTCAAATTGCAGGTAAATTAGGCGTTTCTCGCGCCTTTTTTAGTCTGTTTACTGCTGCAACCATGTCATTTTATGGACCTCCTTGTGCTTTGTTAAATGATGAAAGGTCAATAGCTGAGGACTATACAGTTGTTCCAAAATGGATTCCTTTCGAAACGAAAGTTGTGTATAGGCTGCATG</genome_strand>
        <mrna_strand>AGAATGAAAAAGATAAACTTCATGTTGTGATGTTTCCATGGCTAGCCATGGGACATATCATACCTTTTTTTCATCTATCAAAGTGTTTAGCACGAAGGGGTCATAGAGTCACCTTCATTTCAACTCCAAGAAACATTGAAAGAGTCGTCAATAAAGTTCCCTCTGATCTTGCTCATCTGTTGCATATTGTGTGTTTTCATTTGCCTAAAGTTGAAAACTTGCCGGATGATGCAGAGTCATCAATGGACATACCTTACCAAAAAGCTCAGTTCTTGAAGATAGCTTTCGATTCGCTTGAAATCCCATTAACCAATTATCTTGAGAGTTCATCAAATCCCAAACCAGATTGGATTGTCTATGACTATGCTTCTCACTGGCTACCTCAAATTGCAGGTAAATTAGGCGTTTCTCGCGCCTTTTTTAGTCTGTTTACTGCTGCAACTATGTCATTTTATGGACCTCCTTGTGCTTTGTTAAATGATGAAAGGTCAATAGCTGAGGACTATACAGTTGTTCCAAAATGGATTCCTTTTTAAACGAAAGTTGTGTATAGGCTGCATG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0018B07-nGyJi/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E208245" ref_strand="+" ref_description="SGN-E208245 [cLEC-37-H19]">
      <seq>agaatgaaaaagataaacttcatgttgtgatgtttccatggctagccatgggacatatcatacctttttttcatctatcaaagtgtttagcacgaaggggtcatagagtcaccttcatttcaactccaagaaacattgaaagagtcgtcaataaagttccctctgatcttgctcatctgttgcatattgtgtgttttcatttgcctaaagttgaaaacttgccggatgatgcagagtcatcaatggacataccttaccaaaaagctcagttcttgaagatagctttcgattcgcttgaaatcccattaaccaattatcttgagagttcatcaaatcccaaaccagattggattgtctatgactatgcttctcactggctacctcaaattgcaggtaaattaggcgtttctcgcgccttttttagtctgtttactgctgcaactatgtcattttatggacctccttgtgctttgttaaatgatgaaaggtcaatagctgaggactatacag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0018B07-nGyJi/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02SLe0018B07.1" temp_strand="+" temp_description="C02SLe0018B07.1  AC215448.2 htgs_phase:3 submitted_to_sgn_as:C02SLe0018B07 sequenced_by:kribb upload_account_name:korea">
        <position start="86325" stop="87434"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="86625" g_stop="87134" g_length="510"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="510" r_length="510" r_score="0.980"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLe0018B07.1" gen_strand="+" ref_id="SGN-E208245" ref_strand="+">
        <total_alignment_score>0.980</total_alignment_score>
        <cumulative_length_of_scored_exons>510</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0018B07.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E208245" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="86625" e_stop="87134"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGAATGAAAAAGATAAACTTCATGTTGTGATGTTTCCATGGCTAGCCATGGGACATATCATACCTTTTTTTCATCTATCAAAGTGTTTAGCACGAAGGGGCCATAGAGTCACCTTCATTTCAACTCCAAGAAACATTGAAAGAGTCGTCAATAAAGTTCCCTCTGATCTTGCTCATCTGTTGCATATTGTGTGGTTTCAATTGCCTAAAGTTGAAAACTTGCCGGATGATGCAGAGTCATCGATGGATATTCCTTACCAAAAAGCTCAGTTCTTGAAGATAGCTTTCGATTCGCTCGAAATCCCACTGACCAATTATCTTGAGAGTTCATCAAATCCCAAACCAGATTGGATTGTCTATGACTATGCTTCTCACTGGCTACCTCAAATTGCAGGTAAATTAGGCGTTTCTCGCGCCTTTTTTAGTCTGTTTACTGCTGCAACCATGTCATTTTATGGACCTCCTTGTGCTTTGTTAAATGATGAAAGGTCAATAGCTGAGGACTATACAG</genome_strand>
        <mrna_strand>AGAATGAAAAAGATAAACTTCATGTTGTGATGTTTCCATGGCTAGCCATGGGACATATCATACCTTTTTTTCATCTATCAAAGTGTTTAGCACGAAGGGGTCATAGAGTCACCTTCATTTCAACTCCAAGAAACATTGAAAGAGTCGTCAATAAAGTTCCCTCTGATCTTGCTCATCTGTTGCATATTGTGTGTTTTCATTTGCCTAAAGTTGAAAACTTGCCGGATGATGCAGAGTCATCAATGGACATACCTTACCAAAAAGCTCAGTTCTTGAAGATAGCTTTCGATTCGCTTGAAATCCCATTAACCAATTATCTTGAGAGTTCATCAAATCCCAAACCAGATTGGATTGTCTATGACTATGCTTCTCACTGGCTACCTCAAATTGCAGGTAAATTAGGCGTTTCTCGCGCCTTTTTTAGTCTGTTTACTGCTGCAACTATGTCATTTTATGGACCTCCTTGTGCTTTGTTAAATGATGAAAGGTCAATAGCTGAGGACTATACAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0018B07-nGyJi/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E305203" ref_strand="+" ref_description="SGN-E305203 [cLEY-18-P24]">
      <seq>tcatgttgtgatgtttccatggctagccatgggacatatcatacctttttttcatctatcaaagtgtttagcacgaaggggtcatagagtcaccttcatttcaactccaagaaacattgaaagagtcgtcaataaagttccctctgatcttgctcatctgttgcatattgtgtgttttcatttgcctaaagttgaaaacttgccggatgatgcagagtcatcaatggacataccttaccaaaaagctcagttcttgaagatagctttcgattcgcttgaaatcccattaaccaattatcttgagagttcatcaaatcccaaaccagattggattgtctatgactatgcttctcactggctacctcaaattgcaggtaaattaggcgtttctcgcgccttttttagtctgtttactgctgcaactatgtcattttatggacctccttgtgctttgttaaatgatgaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0018B07-nGyJi/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02SLe0018B07.1" temp_strand="+" temp_description="C02SLe0018B07.1  AC215448.2 htgs_phase:3 submitted_to_sgn_as:C02SLe0018B07 sequenced_by:kribb upload_account_name:korea">
        <position start="86344" stop="87409"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="86644" g_stop="87109" g_length="466"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="466" r_length="466" r_score="0.979"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLe0018B07.1" gen_strand="+" ref_id="SGN-E305203" ref_strand="+">
        <total_alignment_score>0.979</total_alignment_score>
        <cumulative_length_of_scored_exons>466</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0018B07.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E305203" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="86644" e_stop="87109"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCATGTTGTGATGTTTCCATGGCTAGCCATGGGACATATCATACCTTTTTTTCATCTATCAAAGTGTTTAGCACGAAGGGGCCATAGAGTCACCTTCATTTCAACTCCAAGAAACATTGAAAGAGTCGTCAATAAAGTTCCCTCTGATCTTGCTCATCTGTTGCATATTGTGTGGTTTCAATTGCCTAAAGTTGAAAACTTGCCGGATGATGCAGAGTCATCGATGGATATTCCTTACCAAAAAGCTCAGTTCTTGAAGATAGCTTTCGATTCGCTCGAAATCCCACTGACCAATTATCTTGAGAGTTCATCAAATCCCAAACCAGATTGGATTGTCTATGACTATGCTTCTCACTGGCTACCTCAAATTGCAGGTAAATTAGGCGTTTCTCGCGCCTTTTTTAGTCTGTTTACTGCTGCAACCATGTCATTTTATGGACCTCCTTGTGCTTTGTTAAATGATGAA</genome_strand>
        <mrna_strand>TCATGTTGTGATGTTTCCATGGCTAGCCATGGGACATATCATACCTTTTTTTCATCTATCAAAGTGTTTAGCACGAAGGGGTCATAGAGTCACCTTCATTTCAACTCCAAGAAACATTGAAAGAGTCGTCAATAAAGTTCCCTCTGATCTTGCTCATCTGTTGCATATTGTGTGTTTTCATTTGCCTAAAGTTGAAAACTTGCCGGATGATGCAGAGTCATCAATGGACATACCTTACCAAAAAGCTCAGTTCTTGAAGATAGCTTTCGATTCGCTTGAAATCCCATTAACCAATTATCTTGAGAGTTCATCAAATCCCAAACCAGATTGGATTGTCTATGACTATGCTTCTCACTGGCTACCTCAAATTGCAGGTAAATTAGGCGTTTCTCGCGCCTTTTTTAGTCTGTTTACTGCTGCAACTATGTCATTTTATGGACCTCCTTGTGCTTTGTTAAATGATGAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0018B07-nGyJi/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E707477" ref_strand="+" ref_description="SGN-E707477 [FA33AE06]">
      <seq>cgtaggggccatagagtcaccttcatttcaactccaagaaacattgaaagagtcgtcaataaagttccctctgatcttgctcatctgttgcatattgtgtggtttcaattgcctaaagttgaaaacttgccggatgatgcagagtcatcgatggatattccttaccaaaaagctcagttcttgaagatagctttcgattcgctcgaaatcccactgaccaattatcttgagagttcatcaaatcccaaaccagattggattgtctatgactatgcttctcactggctacctcaaattgcaggtaaattaggcgtttctcgcgccttttttagtctgtttactgctgcaaccatgtcattttatggacctccttgtgctttgttaaatgatgaaaggtcaatagctgaggactatacagttgttccaaaatggattcctttcgaaacgaaagttgtgtataggctgcatgagattaagaagaatttcgaagcaccagctgatgaatcaggtacatctgatggagccagatttggtgcttcaattgatgcaagtgatgtcatattgtttcgaaattgtgttgagtttgaatccgaatggttcagcttggtttctgagctttatcagaaacctattatatccattggtgttctacctccatctgttgtagttgatcaagaacaagatgacagcaatgatgcgtcgtggtcaggaatcaagagttggctagataagcacaatcaagattctgttgtttatgttgcacttggaactgaagcaacactgaatcaacaagagctgaatgagctagctttggggttagaaaaatgcggattaccattcgtttgggtattagagatcagccaaaacataatcaacaagattcgtgtattcagctgcctgatgga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0018B07-nGyJi/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02SLe0018B07.1" temp_strand="+" temp_description="C02SLe0018B07.1  AC215448.2 htgs_phase:3 submitted_to_sgn_as:C02SLe0018B07 sequenced_by:kribb upload_account_name:korea">
        <position start="86417" stop="87922"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="86717" g_stop="87622" g_length="906"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="905" r_length="905" r_score="0.997"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLe0018B07.1" gen_strand="+" ref_id="SGN-E707477" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>906</cumulative_length_of_scored_exons>
        <coverage percentage="1.001" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0018B07.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E707477" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="86717" e_stop="87622"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CGAAGGGGCCATAGAGTCACCTTCATTTCAACTCCAAGAAACATTGAAAGAGTCGTCAATAAAGTTCCCTCTGATCTTGCTCATCTGTTGCATATTGTGTGGTTTCAATTGCCTAAAGTTGAAAACTTGCCGGATGATGCAGAGTCATCGATGGATATTCCTTACCAAAAAGCTCAGTTCTTGAAGATAGCTTTCGATTCGCTCGAAATCCCACTGACCAATTATCTTGAGAGTTCATCAAATCCCAAACCAGATTGGATTGTCTATGACTATGCTTCTCACTGGCTACCTCAAATTGCAGGTAAATTAGGCGTTTCTCGCGCCTTTTTTAGTCTGTTTACTGCTGCAACCATGTCATTTTATGGACCTCCTTGTGCTTTGTTAAATGATGAAAGGTCAATAGCTGAGGACTATACAGTTGTTCCAAAATGGATTCCTTTCGAAACGAAAGTTGTGTATAGGCTGCATGAGATTAAGAAGAATTTCGAAGCACCAGCTGATGAATCAGGTACATCTGATGGAGCCAGATTTGGTGCTTCAATTGATGCAAGTGATGTCATATTGTTTCGAAATTGTGTTGAGTTTGAATCCGAATGGTTCAGCTTGGTTTCTGAGCTTTATCAGAAACCTATTATATCCATTGGTGTGCTACCTCCATCTGTTGTAGTTGATCAAGAACAAGATGACAGCAATGATGCGTCGTGGTCAGGAATCAAGAGTTGGCTAGATAAGCACAATCAAGATTCTGTTGTTTATGTTGCACTTGGAACTGAAGCAACACTGAATCAACAAGAGCTGAATGAGCTAGCTTTGGGGTTAGAAAAATGCGGATTACCATTCGTTTGGGTATTAAGAGATCAGCCAAAACATAATCAACAAGATTCGTGTATTCAGCTGCCTGATGGA</genome_strand>
        <mrna_strand>CGTAGGGGCCATAGAGTCACCTTCATTTCAACTCCAAGAAACATTGAAAGAGTCGTCAATAAAGTTCCCTCTGATCTTGCTCATCTGTTGCATATTGTGTGGTTTCAATTGCCTAAAGTTGAAAACTTGCCGGATGATGCAGAGTCATCGATGGATATTCCTTACCAAAAAGCTCAGTTCTTGAAGATAGCTTTCGATTCGCTCGAAATCCCACTGACCAATTATCTTGAGAGTTCATCAAATCCCAAACCAGATTGGATTGTCTATGACTATGCTTCTCACTGGCTACCTCAAATTGCAGGTAAATTAGGCGTTTCTCGCGCCTTTTTTAGTCTGTTTACTGCTGCAACCATGTCATTTTATGGACCTCCTTGTGCTTTGTTAAATGATGAAAGGTCAATAGCTGAGGACTATACAGTTGTTCCAAAATGGATTCCTTTCGAAACGAAAGTTGTGTATAGGCTGCATGAGATTAAGAAGAATTTCGAAGCACCAGCTGATGAATCAGGTACATCTGATGGAGCCAGATTTGGTGCTTCAATTGATGCAAGTGATGTCATATTGTTTCGAAATTGTGTTGAGTTTGAATCCGAATGGTTCAGCTTGGTTTCTGAGCTTTATCAGAAACCTATTATATCCATTGGTGTTCTACCTCCATCTGTTGTAGTTGATCAAGAACAAGATGACAGCAATGATGCGTCGTGGTCAGGAATCAAGAGTTGGCTAGATAAGCACAATCAAGATTCTGTTGTTTATGTTGCACTTGGAACTGAAGCAACACTGAATCAACAAGAGCTGAATGAGCTAGCTTTGGGGTTAGAAAAATGCGGATTACCATTCGTTTGGGTATT-AGAGATCAGCCAAAACATAATCAACAAGATTCGTGTATTCAGCTGCCTGATGGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0018B07-nGyJi/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E255733" ref_strand="+" ref_description="SGN-E255733 [cLEG-36-N19]">
      <seq>gcaaaaagctcagttcttgaagatagctttcgattcgcttgaaatcccattaaccaattatcttgagagttcatcaaatcccaaaccagattggattgtctatgactatgcttctcactggctacctcaaattgcaggtaaattaggcgtttctcgcgccttttttagtctgtttactgctgcaactatgtcattttatggacctccttgtgctttgttaaatgatgaaaggtcaatagctgaggactatacagttgttccaaaatggattcctttcgaaacgaaagttgtgtataggctgcatgagattaagaagaatttcgaagcaccagctgatgaatcaggtacatctgatggagccagatttggtgcttcaattgatgcaagtgatgtcatattgtttcgaaattgtgttgagtttgaatccgaatggttcagcttggtttctgagctttatcagaaacctattatat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0018B07-nGyJi/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02SLe0018B07.1" temp_strand="+" temp_description="C02SLe0018B07.1  AC215448.2 htgs_phase:3 submitted_to_sgn_as:C02SLe0018B07 sequenced_by:kribb upload_account_name:korea">
        <position start="86582" stop="87653"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="86881" g_stop="87353" g_length="473"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="473" r_length="473" r_score="0.989"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLe0018B07.1" gen_strand="+" ref_id="SGN-E255733" ref_strand="+">
        <total_alignment_score>0.989</total_alignment_score>
        <cumulative_length_of_scored_exons>473</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0018B07.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E255733" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="86881" e_stop="87353"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCAAAAAGCTCAGTTCTTGAAGATAGCTTTCGATTCGCTCGAAATCCCACTGACCAATTATCTTGAGAGTTCATCAAATCCCAAACCAGATTGGATTGTCTATGACTATGCTTCTCACTGGCTACCTCAAATTGCAGGTAAATTAGGCGTTTCTCGCGCCTTTTTTAGTCTGTTTACTGCTGCAACCATGTCATTTTATGGACCTCCTTGTGCTTTGTTAAATGATGAAAGGTCAATAGCTGAGGACTATACAGTTGTTCCAAAATGGATTCCTTTCGAAACGAAAGTTGTGTATAGGCTGCATGAGATTAAGAAGAATTTCGAAGCACCAGCTGATGAATCAGGTACATCTGATGGAGCCAGATTTGGTGCTTCAATTGATGCAAGTGATGTCATATTGTTTCGAAATTGTGTTGAGTTTGAATCCGAATGGTTCAGCTTGGTTTCTGAGCTTTATCAGAAACCTATTATAT</genome_strand>
        <mrna_strand>GCAAAAAGCTCAGTTCTTGAAGATAGCTTTCGATTCGCTTGAAATCCCATTAACCAATTATCTTGAGAGTTCATCAAATCCCAAACCAGATTGGATTGTCTATGACTATGCTTCTCACTGGCTACCTCAAATTGCAGGTAAATTAGGCGTTTCTCGCGCCTTTTTTAGTCTGTTTACTGCTGCAACTATGTCATTTTATGGACCTCCTTGTGCTTTGTTAAATGATGAAAGGTCAATAGCTGAGGACTATACAGTTGTTCCAAAATGGATTCCTTTCGAAACGAAAGTTGTGTATAGGCTGCATGAGATTAAGAAGAATTTCGAAGCACCAGCTGATGAATCAGGTACATCTGATGGAGCCAGATTTGGTGCTTCAATTGATGCAAGTGATGTCATATTGTTTCGAAATTGTGTTGAGTTTGAATCCGAATGGTTCAGCTTGGTTTCTGAGCTTTATCAGAAACCTATTATAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0018B07-nGyJi/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E272131" ref_strand="+" ref_description="SGN-E272131 [cLEN-4-F1]">
      <seq>acgaatcttgttgattatgttttggctgatctcttaatacccaaacgaatggtaatccgcatttttctaaccccaaagctagctcattcagctcttgttgattcagtgttgcttcagttccaagtgcaacataaacaacagaatcttgattgtgcttatctagccaattcttgattcctgaccacgacgcatcattgctgtcatcttgttcatgatcaactacaacagatggaggtagaacaccaatggatataataggtttctgataaagctcagaaaccaagctgaaccattcggattcaaactcaacacaatttcgaaacaatatgacatcacttgcatcaattgaagcaccaaatctggctccatcagatgtacctgattcatcagctggtgcttcgaaattcttcttaatctcatgcagcctatacacaactttcgtttcgaaaggaatccattttggaacaactgtatagtcctcagctattgacctttcatcatttaacaaagcacaaggaggtccataaaatgacatagttgcagcagtaaacagactaaaaaaggcgcgagaaacgcctaatttacctgcaatttgaggtagccagtgagaagcatagtcatagacaatccaatctggtttgggatttgatgaactct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0018B07-nGyJi/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02SLe0018B07.1" temp_strand="-" temp_description="C02SLe0018B07.1  AC215448.2 htgs_phase:3 submitted_to_sgn_as:C02SLe0018B07 sequenced_by:kribb upload_account_name:korea">
        <position start="87902" stop="86646"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="87602" g_stop="86946" g_length="657"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="657" r_length="657" r_score="0.994"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLe0018B07.1" gen_strand="-" ref_id="SGN-E272131" ref_strand="+">
        <total_alignment_score>0.994</total_alignment_score>
        <cumulative_length_of_scored_exons>657</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0018B07.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E272131" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="87602" e_stop="86946"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACGAATCTTGTTGATTATGTTTTGGCTGATCTCTTAATACCCAAACGAATGGTAATCCGCATTTTTCTAACCCCAAAGCTAGCTCATTCAGCTCTTGTTGATTCAGTGTTGCTTCAGTTCCAAGTGCAACATAAACAACAGAATCTTGATTGTGCTTATCTAGCCAACTCTTGATTCCTGACCACGACGCATCATTGCTGTCATCTTGTTCTTGATCAACTACAACAGATGGAGGTAGCACACCAATGGATATAATAGGTTTCTGATAAAGCTCAGAAACCAAGCTGAACCATTCGGATTCAAACTCAACACAATTTCGAAACAATATGACATCACTTGCATCAATTGAAGCACCAAATCTGGCTCCATCAGATGTACCTGATTCATCAGCTGGTGCTTCGAAATTCTTCTTAATCTCATGCAGCCTATACACAACTTTCGTTTCGAAAGGAATCCATTTTGGAACAACTGTATAGTCCTCAGCTATTGACCTTTCATCATTTAACAAAGCACAAGGAGGTCCATAAAATGACATGGTTGCAGCAGTAAACAGACTAAAAAAGGCGCGAGAAACGCCTAATTTACCTGCAATTTGAGGTAGCCAGTGAGAAGCATAGTCATAGACAATCCAATCTGGTTTGGGATTTGATGAACTCT</genome_strand>
        <mrna_strand>ACGAATCTTGTTGATTATGTTTTGGCTGATCTCTTAATACCCAAACGAATGGTAATCCGCATTTTTCTAACCCCAAAGCTAGCTCATTCAGCTCTTGTTGATTCAGTGTTGCTTCAGTTCCAAGTGCAACATAAACAACAGAATCTTGATTGTGCTTATCTAGCCAATTCTTGATTCCTGACCACGACGCATCATTGCTGTCATCTTGTTCATGATCAACTACAACAGATGGAGGTAGAACACCAATGGATATAATAGGTTTCTGATAAAGCTCAGAAACCAAGCTGAACCATTCGGATTCAAACTCAACACAATTTCGAAACAATATGACATCACTTGCATCAATTGAAGCACCAAATCTGGCTCCATCAGATGTACCTGATTCATCAGCTGGTGCTTCGAAATTCTTCTTAATCTCATGCAGCCTATACACAACTTTCGTTTCGAAAGGAATCCATTTTGGAACAACTGTATAGTCCTCAGCTATTGACCTTTCATCATTTAACAAAGCACAAGGAGGTCCATAAAATGACATAGTTGCAGCAGTAAACAGACTAAAAAAGGCGCGAGAAACGCCTAATTTACCTGCAATTTGAGGTAGCCAGTGAGAAGCATAGTCATAGACAATCCAATCTGGTTTGGGATTTGATGAACTCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0018B07-nGyJi/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E703622" ref_strand="+" ref_description="SGN-E703622 [FA22AA11]">
      <seq>gcgtttctcgcgccttttttagtctgtttactgctgcaaccatgtcattttatggacctccttgtgctttgttaaatgatgaaaggtcaatagctgaggactatacagttgttccaaaatggattcctttcgaaacgaaagttgtgtataggctgcatgagattaagaagaatttcgaagcaccagctgatgaatcaggtacatctgatggagccagatttggtgcttcaattgatgcaagtgatgtcatattgtttcgaaattgtgttgagtttgaatccgaatggttcagcttggtttctgagctttatcagaaacctattatatccattggtgttctacctccatctgttgtagttgatcaagaacaagatgacagcaatgatgcgtcgtggtcaggaatcaagagttggctagataagcacaatcaagattctgttgtttatgttgcacttggaactgaagcaacactgaatcaacaagagctgaatgagctagctttggggttagaaaaatgcggattaccattcgtttgggtattaagagatcagccaaaacataatcaacaagattcgtgtattcagctgcctgatggatacgaagacagagtcaaaaacagaggtgtaatatacaaaggatgggtaccacagacgaagatactgagtcattcgtcagtangtggattcttgactcattgtggatggaattcggtcatagaagcgctatgttttgggcgggttttggttatgttcccggtgttgaatgatccaagattgaataca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0018B07-nGyJi/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02SLe0018B07.1" temp_strand="+" temp_description="C02SLe0018B07.1  AC215448.2 htgs_phase:3 submitted_to_sgn_as:C02SLe0018B07 sequenced_by:kribb upload_account_name:korea">
        <position start="86727" stop="88108"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="87027" g_stop="87808" g_length="782"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="782" r_length="782" r_score="0.995"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLe0018B07.1" gen_strand="+" ref_id="SGN-E703622" ref_strand="+">
        <total_alignment_score>0.995</total_alignment_score>
        <cumulative_length_of_scored_exons>782</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0018B07.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E703622" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="87027" e_stop="87808"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCGTTTCTCGCGCCTTTTTTAGTCTGTTTACTGCTGCAACCATGTCATTTTATGGACCTCCTTGTGCTTTGTTAAATGATGAAAGGTCAATAGCTGAGGACTATACAGTTGTTCCAAAATGGATTCCTTTCGAAACGAAAGTTGTGTATAGGCTGCATGAGATTAAGAAGAATTTCGAAGCACCAGCTGATGAATCAGGTACATCTGATGGAGCCAGATTTGGTGCTTCAATTGATGCAAGTGATGTCATATTGTTTCGAAATTGTGTTGAGTTTGAATCCGAATGGTTCAGCTTGGTTTCTGAGCTTTATCAGAAACCTATTATATCCATTGGTGTGCTACCTCCATCTGTTGTAGTTGATCAAGAACAAGATGACAGCAATGATGCGTCGTGGTCAGGAATCAAGAGTTGGCTAGATAAGCACAATCAAGATTCTGTTGTTTATGTTGCACTTGGAACTGAAGCAACACTGAATCAACAAGAGCTGAATGAGCTAGCTTTGGGGTTAGAAAAATGCGGATTACCATTCGTTTGGGTATTAAGAGATCAGCCAAAACATAATCAACAAGATTCGTGTATTCAGCTGCCTGATGGATACGAAGACAGAGTCAAAAACAGAGGTGTAATATACAAAGGATGGGTACCACAGACGAAGATACTGAGTCATTCGTCAGTAGGTGGATTCTTGACTCATTGTGGATGGAATTCGGTCATAGAAGCGCTATGTTTTGGGCGGGTTTTGGTTATGTTCCCGGTGTTGAATGATCAAGGATTGAATACA</genome_strand>
        <mrna_strand>GCGTTTCTCGCGCCTTTTTTAGTCTGTTTACTGCTGCAACCATGTCATTTTATGGACCTCCTTGTGCTTTGTTAAATGATGAAAGGTCAATAGCTGAGGACTATACAGTTGTTCCAAAATGGATTCCTTTCGAAACGAAAGTTGTGTATAGGCTGCATGAGATTAAGAAGAATTTCGAAGCACCAGCTGATGAATCAGGTACATCTGATGGAGCCAGATTTGGTGCTTCAATTGATGCAAGTGATGTCATATTGTTTCGAAATTGTGTTGAGTTTGAATCCGAATGGTTCAGCTTGGTTTCTGAGCTTTATCAGAAACCTATTATATCCATTGGTGTTCTACCTCCATCTGTTGTAGTTGATCAAGAACAAGATGACAGCAATGATGCGTCGTGGTCAGGAATCAAGAGTTGGCTAGATAAGCACAATCAAGATTCTGTTGTTTATGTTGCACTTGGAACTGAAGCAACACTGAATCAACAAGAGCTGAATGAGCTAGCTTTGGGGTTAGAAAAATGCGGATTACCATTCGTTTGGGTATTAAGAGATCAGCCAAAACATAATCAACAAGATTCGTGTATTCAGCTGCCTGATGGATACGAAGACAGAGTCAAAAACAGAGGTGTAATATACAAAGGATGGGTACCACAGACGAAGATACTGAGTCATTCGTCAGTANGTGGATTCTTGACTCATTGTGGATGGAATTCGGTCATAGAAGCGCTATGTTTTGGGCGGGTTTTGGTTATGTTCCCGGTGTTGAATGATCCAAGATTGAATACA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0018B07-nGyJi/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E710241" ref_strand="+" ref_description="SGN-E710241 [FA54DA11]">
      <seq>cgatccattggtgttctacctccatctgttgtagttgatcaacaacaagatgacagcaatgatgcgtcgtggtcaggaatcaagagttggctagataagcacaatcaagattctgttgtttatgttgcacttggaactgaagcaacactgaatcaacaagagctgaatgagctagctttggggttagaaaaattcggattaccattcgtttgggtattaagagatcagccaaaacataatcaacaagattcgtgtattcagctgcctgatggatacgaagacagagtcaaaaacagaggtgtaatatacaaaggatgggtaccacagacgaagatactgagtcattcgtcagtaggtggattcttgactcattgtggatggaattcggtcatagaagcgctatgttttgggcgggttttggttatgttcccggtgttgaatgatcaaggattgaatacaaggttgttgcaagagaaaggagttggtgtagagataccaagaaatgaaaaagatggatttttcactagtgattcagtggctgaagctgtgaagtttggtgtagtgagtgaagagggtgagttgttgagagctaatgcaagacaaatgagttgtttgtttggagataggaagagaaatgaacaacttattgatgattgtgttggttatttcatggaaaataggataagcaaatctaatagctccatcggttgactatctaacccttttacctgagttcgattctcctccttctatttccccaaaaaag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0018B07-nGyJi/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02SLe0018B07.1" temp_strand="+" temp_description="C02SLe0018B07.1  AC215448.2 htgs_phase:3 submitted_to_sgn_as:C02SLe0018B07 sequenced_by:kribb upload_account_name:korea">
        <position start="87052" stop="88413"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="87350" g_stop="88113" g_length="764"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="766" r_length="766" r_score="0.986"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLe0018B07.1" gen_strand="+" ref_id="SGN-E710241" ref_strand="+">
        <total_alignment_score>0.986</total_alignment_score>
        <cumulative_length_of_scored_exons>764</cumulative_length_of_scored_exons>
        <coverage percentage="0.997" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0018B07.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E710241" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="87350" e_stop="88113"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATATCCATTGGTGTGCTACCTCCATCTGTTGTAGTTGATCAAGAACAAGATGACAGCAATGATGCGTCGTGGTCAGGAATCAAGAGTTGGCTAGATAAGCACAATCAAGATTCTGTTGTTTATGTTGCACTTGGAACTGAAGCAACACTGAATCAACAAGAGCTGAATGAGCTAGCTTTGGGGTTAGAAAAATGCGGATTACCATTCGTTTGGGTATTAAGAGATCAGCCAAAACATAATCAACAAGATTCGTGTATTCAGCTGCCTGATGGATACGAAGACAGAGTCAAAAACAGAGGTGTAATATACAAAGGATGGGTACCACAGACGAAGATACTGAGTCATTCGTCAGTAGGTGGATTCTTGACTCATTGTGGATGGAATTCGGTCATAGAAGCGCTATGTTTTGGGCGGGTTTTGGTTATGTTCCCGGTGTTGAATGATCAAGGATTGAATACAAGGTTGTTGCAAGAGAAAGGAGTTGGTGTAGAGATACCAAGAAATGAAAAAGATGGATTTTTCACTAGTGATTCAGTGGCTGAAGCTGTGAAGTTTGGTGTAGTGAGTGAAGAGGGTGAGTTGTTGAGAGCTAATGCAAGACAAATGAGTTGTTTGTTTGGAGATAGGAAGAGAAATGAACAACTTATTGATGATTGTGTTGGTTATTTCATGGAAAATAGGATAAGCAAATCTAATAGCTCCATCGGTTGACTATCTAA-CTTTTTACCTGAGTTCGATTCTCAT-CTTCTATTTCCCCAAAAAAG</genome_strand>
        <mrna_strand>CGATCCATTGGTGTTCTACCTCCATCTGTTGTAGTTGATCAACAACAAGATGACAGCAATGATGCGTCGTGGTCAGGAATCAAGAGTTGGCTAGATAAGCACAATCAAGATTCTGTTGTTTATGTTGCACTTGGAACTGAAGCAACACTGAATCAACAAGAGCTGAATGAGCTAGCTTTGGGGTTAGAAAAATTCGGATTACCATTCGTTTGGGTATTAAGAGATCAGCCAAAACATAATCAACAAGATTCGTGTATTCAGCTGCCTGATGGATACGAAGACAGAGTCAAAAACAGAGGTGTAATATACAAAGGATGGGTACCACAGACGAAGATACTGAGTCATTCGTCAGTAGGTGGATTCTTGACTCATTGTGGATGGAATTCGGTCATAGAAGCGCTATGTTTTGGGCGGGTTTTGGTTATGTTCCCGGTGTTGAATGATCAAGGATTGAATACAAGGTTGTTGCAAGAGAAAGGAGTTGGTGTAGAGATACCAAGAAATGAAAAAGATGGATTTTTCACTAGTGATTCAGTGGCTGAAGCTGTGAAGTTTGGTGTAGTGAGTGAAGAGGGTGAGTTGTTGAGAGCTAATGCAAGACAAATGAGTTGTTTGTTTGGAGATAGGAAGAGAAATGAACAACTTATTGATGATTGTGTTGGTTATTTCATGGAAAATAGGATAAGCAAATCTAATAGCTCCATCGGTTGACTATCTAACCCTTTTACCTGAGTTCGATTCTCCTCCTTCTATTTCCCCAAAAAAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0018B07-nGyJi/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E711698" ref_strand="+" ref_description="SGN-E711698 [FB02CH06]">
      <seq>cgatttgaatgagctagctttggggttagaaaaatgcggattcccattcgtttgggtattaagagatcagccaaaacataatcaacaagattcgtgtattcagctgcctgatggatacgaagacagagtcaaaaacagaggtgtaatatacaaaggatgggtaccacagacgaagatactgagtcattcgtcagtaggtggattcttgactcattgtggatggaattcggtcatagaagcgctatgttttgggcgggttttggttatgttcccggtgttgaatgatcaaggattgaatacaaggttgttgcaagagaaaggagttggtgtagagataccaagaaatgaaaaagatggatttttcactagtgattcagtggctgaagctgtgaagtttggtgtagtgagtgaagagggtgagttgttgagagctaatgcaagacaaatgagttgtttgtttggagataggaagagaaatgaacaacttattgatgattgtgttggttatttcatggaaaataggataagcaaatctaatagctccatcggttgactatctaactttttacctgagttcgattctcatcttctatttccccaaaaaaggagttaagaaagtagtcgttgcaatcgagtttcttactttttttacaccttgtttggatgattgttacctgttttattgtattgtattgttagtttaaatataatgtttgtttcaactgttaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0018B07-nGyJi/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02SLe0018B07.1" temp_strand="+" temp_description="C02SLe0018B07.1  AC215448.2 htgs_phase:3 submitted_to_sgn_as:C02SLe0018B07 sequenced_by:kribb upload_account_name:korea">
        <position start="87209" stop="88535"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="87508" g_stop="88234" g_length="727"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="727" r_length="727" r_score="0.994"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="728" polyA_stop="741"/>
      <MATCH_line gen_id="C02SLe0018B07.1" gen_strand="+" ref_id="SGN-E711698" ref_strand="+">
        <total_alignment_score>0.994</total_alignment_score>
        <cumulative_length_of_scored_exons>727</cumulative_length_of_scored_exons>
        <coverage percentage="0.981" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0018B07.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E711698" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="87508" e_stop="88234"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGAGCTGAATGAGCTAGCTTTGGGGTTAGAAAAATGCGGATTACCATTCGTTTGGGTATTAAGAGATCAGCCAAAACATAATCAACAAGATTCGTGTATTCAGCTGCCTGATGGATACGAAGACAGAGTCAAAAACAGAGGTGTAATATACAAAGGATGGGTACCACAGACGAAGATACTGAGTCATTCGTCAGTAGGTGGATTCTTGACTCATTGTGGATGGAATTCGGTCATAGAAGCGCTATGTTTTGGGCGGGTTTTGGTTATGTTCCCGGTGTTGAATGATCAAGGATTGAATACAAGGTTGTTGCAAGAGAAAGGAGTTGGTGTAGAGATACCAAGAAATGAAAAAGATGGATTTTTCACTAGTGATTCAGTGGCTGAAGCTGTGAAGTTTGGTGTAGTGAGTGAAGAGGGTGAGTTGTTGAGAGCTAATGCAAGACAAATGAGTTGTTTGTTTGGAGATAGGAAGAGAAATGAACAACTTATTGATGATTGTGTTGGTTATTTCATGGAAAATAGGATAAGCAAATCTAATAGCTCCATCGGTTGACTATCTAACTTTTTACCTGAGTTCGATTCTCATCTTCTATTTCCCCAAAAAAGGAGTTAAGAAAGTAGTCGTTGCAATCGAGTTTCTTACTTTTTTTACACCTTGTTTGGATGATTGTTACCTGTTTTATTGTATTGTATTGTTAGTTTAAATATAATGTTTGTTTCAACTGTT</genome_strand>
        <mrna_strand>CGATTTGAATGAGCTAGCTTTGGGGTTAGAAAAATGCGGATTCCCATTCGTTTGGGTATTAAGAGATCAGCCAAAACATAATCAACAAGATTCGTGTATTCAGCTGCCTGATGGATACGAAGACAGAGTCAAAAACAGAGGTGTAATATACAAAGGATGGGTACCACAGACGAAGATACTGAGTCATTCGTCAGTAGGTGGATTCTTGACTCATTGTGGATGGAATTCGGTCATAGAAGCGCTATGTTTTGGGCGGGTTTTGGTTATGTTCCCGGTGTTGAATGATCAAGGATTGAATACAAGGTTGTTGCAAGAGAAAGGAGTTGGTGTAGAGATACCAAGAAATGAAAAAGATGGATTTTTCACTAGTGATTCAGTGGCTGAAGCTGTGAAGTTTGGTGTAGTGAGTGAAGAGGGTGAGTTGTTGAGAGCTAATGCAAGACAAATGAGTTGTTTGTTTGGAGATAGGAAGAGAAATGAACAACTTATTGATGATTGTGTTGGTTATTTCATGGAAAATAGGATAAGCAAATCTAATAGCTCCATCGGTTGACTATCTAACTTTTTACCTGAGTTCGATTCTCATCTTCTATTTCCCCAAAAAAGGAGTTAAGAAAGTAGTCGTTGCAATCGAGTTTCTTACTTTTTTTACACCTTGTTTGGATGATTGTTACCTGTTTTATTGTATTGTATTGTTAGTTTAAATATAATGTTTGTTTCAACTGTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0018B07-nGyJi/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E376491" ref_strand="+" ref_description="SGN-E376491 [TUS-17-N15](-)">
      <seq>ggcgggttttggttatgttcccggtgttgaatgatcaaggattgaatacaaggttgttgcaagagaaaggagttggtgtagagataccaagaaatgaaaaagatggatttttcactagtgattcagtggctgaagctgtgaagtttggtgtagtgagtgaagagggtgagttgttgagagctaatgcaagacaaatgagttgtttgtttggagataggaagagaaatgaacaacttattgatgattgtgttggttatttcatggaaaataggataagcaaatctaatagctccatcggttgactatctaactttttacctgagttcaattctcatcttctatttccccaaaaaaggagttaagaaagtagtcgttgcaatcgagtttcttactttttttacaccttgtttggatgattgttacctgttttattgtattgtattgttagtttaaatataatgtttgtttcaactgttatttatattctattatatggtatcgttcaaatctatcgttgttatactcattttatgtaacgatttggtgtgattgtgttgttaccttgataatttcttttcattttgtctttatttattatttaataatcatatttcatcttttaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0018B07-nGyJi/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02SLe0018B07.1" temp_strand="+" temp_description="C02SLe0018B07.1  AC215448.2 htgs_phase:3 submitted_to_sgn_as:C02SLe0018B07 sequenced_by:kribb upload_account_name:korea">
        <position start="87459" stop="88680"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="87759" g_stop="88379" g_length="621"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="621" r_length="621" r_score="0.998"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLe0018B07.1" gen_strand="+" ref_id="SGN-E376491" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>621</cumulative_length_of_scored_exons>
        <coverage percentage="0.986" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0018B07.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E376491" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="87759" e_stop="88379"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGCGGGTTTTGGTTATGTTCCCGGTGTTGAATGATCAAGGATTGAATACAAGGTTGTTGCAAGAGAAAGGAGTTGGTGTAGAGATACCAAGAAATGAAAAAGATGGATTTTTCACTAGTGATTCAGTGGCTGAAGCTGTGAAGTTTGGTGTAGTGAGTGAAGAGGGTGAGTTGTTGAGAGCTAATGCAAGACAAATGAGTTGTTTGTTTGGAGATAGGAAGAGAAATGAACAACTTATTGATGATTGTGTTGGTTATTTCATGGAAAATAGGATAAGCAAATCTAATAGCTCCATCGGTTGACTATCTAACTTTTTACCTGAGTTCGATTCTCATCTTCTATTTCCCCAAAAAAGGAGTTAAGAAAGTAGTCGTTGCAATCGAGTTTCTTACTTTTTTTACACCTTGTTTGGATGATTGTTACCTGTTTTATTGTATTGTATTGTTAGTTTAAATATAATGTTTGTTTCAACTGTTATTTATATTCTATTATATGGTATCGTTCAAATCTATCGTTGTTATACTCATTTTATGTAACGATTTGGTGTGATTGTGTTGTTACCTTGATAATTTCTTTTCATTTTGTCTTTATTTATTATTTAATAATCATATTTCATCTTTT</genome_strand>
        <mrna_strand>GGCGGGTTTTGGTTATGTTCCCGGTGTTGAATGATCAAGGATTGAATACAAGGTTGTTGCAAGAGAAAGGAGTTGGTGTAGAGATACCAAGAAATGAAAAAGATGGATTTTTCACTAGTGATTCAGTGGCTGAAGCTGTGAAGTTTGGTGTAGTGAGTGAAGAGGGTGAGTTGTTGAGAGCTAATGCAAGACAAATGAGTTGTTTGTTTGGAGATAGGAAGAGAAATGAACAACTTATTGATGATTGTGTTGGTTATTTCATGGAAAATAGGATAAGCAAATCTAATAGCTCCATCGGTTGACTATCTAACTTTTTACCTGAGTTCAATTCTCATCTTCTATTTCCCCAAAAAAGGAGTTAAGAAAGTAGTCGTTGCAATCGAGTTTCTTACTTTTTTTACACCTTGTTTGGATGATTGTTACCTGTTTTATTGTATTGTATTGTTAGTTTAAATATAATGTTTGTTTCAACTGTTATTTATATTCTATTATATGGTATCGTTCAAATCTATCGTTGTTATACTCATTTTATGTAACGATTTGGTGTGATTGTGTTGTTACCTTGATAATTTCTTTTCATTTTGTCTTTATTTATTATTTAATAATCATATTTCATCTTTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0018B07-nGyJi/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E715400" ref_strand="+" ref_description="SGN-E715400 [FB14AF12]">
      <seq>tgtctctggcgaacatgtgcggagtagacttgactgactgggtaaggttgaaggtggcagaaggtcgtagctctgattgttttgataacgttttgtcacctgagttggaaaatccagcaatggagaagcaaatgaaggaggttcttggtatagctgtgcgatgcattcgttctatatctgagagacctggtatcaagactatatatgaggacctttcgtctatatagtttgtactcatctggttttgctctactttgggaatcaaatagctcattgacttcccttttgagtagtaggattagcacagttagtgtgtgaatggggctagttttattgaccattgtttgttgtaaattggggcatatttaatgtgtaaacaatcttttctccccgtttggcttatgagcttccaatgtttgtcaattttttggagtaaatacttgtgactttattttcaaagttttgcagcanaaaaaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0018B07-nGyJi/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02SLe0018B07.1" temp_strand="-" temp_description="C02SLe0018B07.1  AC215448.2 htgs_phase:3 submitted_to_sgn_as:C02SLe0018B07 sequenced_by:kribb upload_account_name:korea">
        <position start="92187" stop="84719"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="91887" g_stop="91395" g_length="493"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="494" r_length="494" r_score="0.963"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLe0018B07.1" gen_strand="-" ref_id="SGN-E715400" ref_strand="+">
        <total_alignment_score>0.963</total_alignment_score>
        <cumulative_length_of_scored_exons>493</cumulative_length_of_scored_exons>
        <coverage percentage="0.998" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0018B07.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E715400" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="91887" e_stop="91395"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGTCTCTGGCGAAGATG-GCGGAGTAGACTTGACTGACTGGGTAAGGTTGAAGGTGGCAGAAGGTCGTAGCTCTGATTGTTTTGATAACGTTTTGTCACCTGAGTTGGAAAATCCAGCAATGGAGAAGCAAATGAAGGAGGTTCTTGGTATAGCTGTGCGATGCATTCGTTCTATATCTGAGAGACCTGGTATCAAGACTATATATGAGGACCTTTCGTCTATATAGTTTGTACTCATCTGGTTTTGCTCTACTTTGGGAATCAAATAGCTCATTGACTTCCCTTTTGAGTAGTAGGATTAGCACAGTTAGTGTGTGAATGGGGCTAGTTTTATTGACCATTGTTTGTTGTAAATTGGGGCATATTTAATGTGTAAACAATCTTTTCTCCCCGTTTGGCTTATGAGCTTCCAATGTTTGTCAATTTTTTGGAGTAAATACTTGTGACTTTATTTTCAAAGTTTTGCAGCACATTTTCACAGAACATTTACAGAT</genome_strand>
        <mrna_strand>TGTCTCTGGCGAACATGTGCGGAGTAGACTTGACTGACTGGGTAAGGTTGAAGGTGGCAGAAGGTCGTAGCTCTGATTGTTTTGATAACGTTTTGTCACCTGAGTTGGAAAATCCAGCAATGGAGAAGCAAATGAAGGAGGTTCTTGGTATAGCTGTGCGATGCATTCGTTCTATATCTGAGAGACCTGGTATCAAGACTATATATGAGGACCTTTCGTCTATATAGTTTGTACTCATCTGGTTTTGCTCTACTTTGGGAATCAAATAGCTCATTGACTTCCCTTTTGAGTAGTAGGATTAGCACAGTTAGTGTGTGAATGGGGCTAGTTTTATTGACCATTGTTTGTTGTAAATTGGGGCATATTTAATGTGTAAACAATCTTTTCTCCCCGTTTGGCTTATGAGCTTCCAATGTTTGTCAATTTTTTGGAGTAAATACTTGTGACTTTATTTTCAAAGTTTTGCAGCANAAAAAAAAAAAAAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0018B07-nGyJi/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E727261" ref_strand="+" ref_description="SGN-E727261 [LA14AG09]">
      <seq>gtctccggatcgtctggctggagagctgtacttccttgatgatacaatctcttttacacctgaggaactttccagggctccggctgaagtcttaggcagaagcagccatggtacatcatacagggcaacactggagaatgggttgcttctgactgtgaaatggttgagagaaggagtggcgaagcagaggaaggattttgcgaaggaggctaaaaagtttgctaatattaggcatcctaatgtagtaggattaagaggttactactggggtcccacacaacatgagaagctcattctttcggattatatatctcctggaagtcttgcaagtttcctctatgatcggcctggtagaaaaggtccaccactaacctggccccaaagactcaaaatatcagttgatgttgcacgtggcttgaactatctccattttgatcgggaggttccacatggaaatcttaaagcaaccaacatcttgttggatgggcctgaccttaatgcaagggttgcagattactgccttcaccgcctcatgactcaagccggcacaatagaacagattcttgatgcaggagttttgggttatcgtgcccctgagttggctgcatcaaagaaaccactgccttccttcaaatcagatgtatatgcttttggagttattttgttggagctgcttagtggaaaatgtgcaggtgatgttgtctctggcgaagatggcggagtagacttgactgactgggtaaggttgaaggtggcagaaggtcgtagctctgattgttttgataacgttttgtcacctgagttgggaaatccagcaatggagaaagcaatgaangaggttcttggtatagctgtgcgatgcattcgttctatatctgagagacctgggtatcagactatatatgaggacct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0018B07-nGyJi/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02SLe0018B07.1" temp_strand="-" temp_description="C02SLe0018B07.1  AC215448.2 htgs_phase:3 submitted_to_sgn_as:C02SLe0018B07 sequenced_by:kribb upload_account_name:korea">
        <position start="93506" stop="91375"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="93206" g_stop="92866" g_length="341"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="341" r_length="341" r_score="0.994"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="92865" i_stop="92246" i_length="620">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="92245" g_stop="91675" g_length="571"/>
          <reference_exon_boundary r_type="cDNA" r_start="342" r_stop="912" r_length="571" r_score="0.986"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLe0018B07.1" gen_strand="-" ref_id="SGN-E727261" ref_strand="+">
        <total_alignment_score>0.989</total_alignment_score>
        <cumulative_length_of_scored_exons>912</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0018B07.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E727261" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="93206" e_stop="92866"/>
          <exon e_start="92245" e_stop="91675"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTCTCCGGATCGTCTGGCTGGAGAGCTGTACTTCCTTGATGATACAATCTCTTTTACACCTGAGGAACTTTCCAGGGCTCCGGCTGAAGTCTTAGGCAGAAGCAGCCATGGTACATCATACAGGGCAACACTGGAGAATGGGTTGCTTCTGACTGTGAAATGGTTGAGAGAAGGAGTGGCGAAGCAGAGGAAGGATTTTGCGAAGGAGGCTAAAGAGTTTACTAATATTAGGCATCCTAATGTAGTAGGATTAAGAGGTTACTACTGGGGTCCCACACAACATGAGAAGCTCATTCTTTCGGATTATATATCTCCTGGAAGTCTTGCAAGTTTCCTCTATGGTAAGCTTCATGTACTCTAAACTCTCATATTAATGTTTTGCAAATACTTAGTAAAGGTTTTGTGTCCCTGTTTATTCATTTTCCTCTTACTGTGTGATATATCTTACAGTTCATATGGTTTTCCCATGCACATTATATATGAGCACTTTAATCATTGCCATGTGATCCTGTAGTGGGAATTTGTGTGAACGACAGTATTTAGTCCTTGGGTTTGATGTGGTAATCCTTTAGTACATCTAGAGCCCAATATATTATGCATGTCTTTTGTTTATGTAACTTCCACACCAAGTAGTAATACACTATGTCACCATCACCATGTGCTCTTTGTGATGGTCACTACATAGGCTGTCAGGGATTTGCAGTATGGTACTAATTATTTCTAGAAGTTAAAATTCTGTATGTTTGAGTTCTTAATGGATCTGAAGTTGTGATGTTCAGCTTTTGTTTCATGATTGATTTTGTTTGAAATCAGCTAGAATATGATACATTTTCCTTCATTTATGAATCCTTCAACTGGACTTGCTTTCTATTCATTTGACTAACTAAATGTTTTCATTCAGTTGATAATTATATATGTGGTCATTTTCAATAAACTTCTCTAATGTGCTGCATGTTTGTAGATCGGCCTGGTAGAAAAGGTCCACCACTAACCTGGCCCCAAAGACTCAAAATATCAGTTGATGTTGCACGTGGCTTGAACTATCTCCATTTTGATCGGGAGGTTCCACATGGAAATCTTAAAGCAACCAACATCTTGTTGGATGGGCCTGACCTTAATGCAAGGGTTGCAGATTACTGCCTTCACCGCCTCATGACTCAAGCCGGCACAATAGAACAGATTCTTGATGCAGGAGTTTTGGGTTATCGTGCCCCTGAGTTGGCTGCATCAAAGAAACCACTGCCTTCCTTCAAATCAGATGTATATGCTTTTGGAGTTATTTTGTTGGAGCTGCTTAGTGGAAAATGTGCAGGTGATGTTGTCTCTGGCGAAGATGGCGGAGTAGACTTGACTGACTGGGTAAGGTTGAAGGTGGCAGAAGGTCGTAGCTCTGATTGTTTTGATAACGTTTTGTCACCTGAGTTGGAAAATCCAGCAATGGAGAAGCAAATGAAGGAGGTTCTTGGTATAGCTGTGCGATGCATTCGTTCTATATCTGAGAGACCT-GGTATCAAGACTATATATGAGGACCT</genome_strand>
        <mrna_strand>GTCTCCGGATCGTCTGGCTGGAGAGCTGTACTTCCTTGATGATACAATCTCTTTTACACCTGAGGAACTTTCCAGGGCTCCGGCTGAAGTCTTAGGCAGAAGCAGCCATGGTACATCATACAGGGCAACACTGGAGAATGGGTTGCTTCTGACTGTGAAATGGTTGAGAGAAGGAGTGGCGAAGCAGAGGAAGGATTTTGCGAAGGAGGCTAAAAAGTTTGCTAATATTAGGCATCCTAATGTAGTAGGATTAAGAGGTTACTACTGGGGTCCCACACAACATGAGAAGCTCATTCTTTCGGATTATATATCTCCTGGAAGTCTTGCAAGTTTCCTCTATG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATCGGCCTGGTAGAAAAGGTCCACCACTAACCTGGCCCCAAAGACTCAAAATATCAGTTGATGTTGCACGTGGCTTGAACTATCTCCATTTTGATCGGGAGGTTCCACATGGAAATCTTAAAGCAACCAACATCTTGTTGGATGGGCCTGACCTTAATGCAAGGGTTGCAGATTACTGCCTTCACCGCCTCATGACTCAAGCCGGCACAATAGAACAGATTCTTGATGCAGGAGTTTTGGGTTATCGTGCCCCTGAGTTGGCTGCATCAAAGAAACCACTGCCTTCCTTCAAATCAGATGTATATGCTTTTGGAGTTATTTTGTTGGAGCTGCTTAGTGGAAAATGTGCAGGTGATGTTGTCTCTGGCGAAGATGGCGGAGTAGACTTGACTGACTGGGTAAGGTTGAAGGTGGCAGAAGGTCGTAGCTCTGATTGTTTTGATAACGTTTTGTCACCTGAGTTGGGAAATCCAGCAATGGAGAAAGCAATGAANGAGGTTCTTGGTATAGCTGTGCGATGCATTCGTTCTATATCTGAGAGACCTGGGTATC-AGACTATATATGAGGACCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0018B07-nGyJi/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E321617" ref_strand="+" ref_description="SGN-E321617 [cTOB-25-D17]">
      <seq>tttggtcgaggccctgtgtgccacttcttccatctccgccagtgccgcacttggtttcttctgcggtttttcatcttcactttcaaccaaagggagtacaacaacaacaaaaaggctctgatacttcatttgattggatgtataggagcatatcattttggtggatgtacgcgtaagcaagagaaacataattcttttatattagtgtgtggctcaattgatatgctgataaaaagttatctttctggttgcaaagaaacttcttttgcaacctctgtctcatctgagatcacgaaacgagcttcatgcgaccagggttctggtgctgaattgtcagaaatgagtccagaaaaagataaatatcctattgatgtctgtatggaatctgattcaaaggatggtgatccttgttccttaaacagtctagatggtccacgaccttcaactttcagtgccatgcctggaagtttaaagcccatagtatatcgtaggaaaaagttcaaacaaaaccctcgtcctactttcttcattgaaccatcagctgaagttaggcctagcaatggatgcccttctgagctctgttctgaagtccattcangaactttgaaggaaggcatagttgctgctgagaaattagctacagcaactcctgttcttctgcctgctgagtgtaacagaggaaaacttctatctaaatc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0018B07-nGyJi/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02SLe0018B07.1" temp_strand="+" temp_description="C02SLe0018B07.1  AC215448.2 htgs_phase:3 submitted_to_sgn_as:C02SLe0018B07 sequenced_by:kribb upload_account_name:korea">
        <position start="125237" stop="128204"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="125537" g_stop="125628" g_length="92"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="92" r_length="92" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="125629" i_stop="127298" i_length="1670">
            <donor d_prob="0.947" d_score="1.00"/>
            <acceptor a_prob="0.969" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="127299" g_stop="127904" g_length="606"/>
          <reference_exon_boundary r_type="cDNA" r_start="93" r_stop="698" r_length="606" r_score="0.997"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLe0018B07.1" gen_strand="+" ref_id="SGN-E321617" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>698</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0018B07.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E321617" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="125537" e_stop="125628"/>
          <exon e_start="127299" e_stop="127904"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTGGTCGAGGCCCTGTGTGCCACTTCTTCCATCTCCGCCAGTGCCGCACTTGGTTTCTTCTGCGGTTTTTCATCTTCACTTTCAACCAAAGGTCCATTCTTGAATTGTACTAAACTTTTTTTTGTTTCAAATTCCCCTTTCCCTTTTCTCATATGCAGTACCCTTTTGAAATTTTGATGTTATTTTGCATTGTAAATAGTTAGATTCAAAGCATCTATAGTCCATTGTTGATTAATCTGGTTATGCAATGTCGTTTGATATAATTTACTTTGTGAATGTCTGTTAATGTTATAGAAATACTGCTATAGGTGAATCAGAATTTGTGGGTGACTCTCTATTATCAATTTTTATGTAGGTTAATAGGGTTTTGTTTGATTTTTTTTTGTTATTAGATGTTTACCTTGGTTTCTTGATTCATGTGATTTCTGATGGGTCTTTGTTTCTTGATTTTGTTATGATTTGTGATAGTTGTTAGATATCTGTCTAGTTGCTAGTTGTTCCCTTTGGTGGCAAATCTATAACCCAAAACCCACATTGACTGCTGTGATATGTCAACCTAAACTTATTTGGACCTATAACTATAGATATCAATGTGGGTTCTTTGTTGGAAAACACAATGGTGGATTATTTGATTGAATTGAAACTTGAAAGGGAAATTGCTAAAGTTCTCACCATGTTAAATGAAATCATCATTTGCCTTCTTTGTACTCATGTCTTAAGGATATACATGGGTATGAGTAATTTGGGCAGATCCTTCAAATCACACGAAAACTTCCTAAAAGTTTTAATGTACCTGTACCTGTACCTGATACATACTCCATGCCAGATCCAATCGGAGATAGCTCTATCATATATGCCTTATAGATTTAATGTTCCATTAGGAAAACGAGGACATGACAACTTCTGATAGCATATAGACTTGTTGTCACTTGTCATGAACCAGACAACTGAATGGTATTGCGACGGGACATCTCGCTTGTAATCGTGTAAACCAGGTTTGAATATATGGGACCTACTTTCCCATAAGCAGTGTGTTTACACACTTTGAAGGCCTATAGTCTTAATGGATCCCGTCCCTGAATCAAATGACTGCTACTGAAGGAGCACTGTGTGTGACCAAAAACTTTTATGCAATGAAAATTGGAAACAGCCACAAAATTAGTATCGACGCCTATCCTAAGTGAAAAGAAAAAGTAGAAGTATGACAAATTATCTACTAACAAAAATGTAATAGATACCATTCCCACTGTTTCATTTTATGTAACATTCTTTCATTTTTAGTCGGGTCCAAAAGAATAGGACCTTTCTATAAATGGGAACTCCTTAAATTTAAAAGTCCCATAATGAGATGCTCTTATAACCTCAAGCCCACATGGTACGATTAAGGCCATAAGTTTTAAGGGTACTTTTAATACCTAACAAAAGTTTTCCCTTCTTTCCTAAACTTCGTTCCTTGTCTAACATCACCACATAAAATGAAACATACAGAGTGATTGATTTACATATTTTCATTGTAACTTCATTGTCCATTTTGAGGGACACGTGTTCTTTTTTCCCACGCACATGGTTTTATCAGTTATGATTTCCTTCTTATGCATGTCTACTATTATGTGTTCTTACATGATTTTTGAGAAATCCTACTTATCTTTCCTTTTTAGGGCTGCATTATCCAATATCCTGTAGTTTGAGCAGTAGCATTCCACTTTATATTGATTAATGTTTTGTTCGTCATCTCATTGCAAGTTTCTTCTTTATGATCAGGGAGTACAACAACAACAAAAAGGCTCTGATACTTCATTTGATTGGATGTATAGGAGCATATCATTTTGGTGGATGTACGCGTAAGCAAGAGAAACATAATTCTTTTATATTAGTGTGTGGCTCAATTGATATGCTGATAAAAAGTTATCTTTCTGGTTGCAAAGAAACTTCTTTTGCAACCTCTGTCTCATCTGAGATCACGAAACGAGCTTCATGCGACCAGGGTTCTGGTGCTGAATTGTCAGAAATGAGTCCAGAAAAAGATAAATATCCTATTGATGTCTGTATGGAATCTGATTCAAAGGATGGTGATCCTTGTTCCTTAAACAGTCTAGATGGTCCACGACCTTCAACTTTCAGTGCCATGCCTGGAAGTTTAAAGCCCATAGTATATCGTAGGAAAAAGTTCAAACAAAACCCTCGTCCTACTTTCTTCATTGAACCATCAGCTGAAGTTAGGCCTAGCAATGGATGCCCTTCTGAGCTCTGTTCTGAAGTCCATTCAGGAACTTTGAAGGAAGGCATAGTTGCTGCTGAGAAATTAGCTACAGCAACTCCTGTTCTTCTGCCTGCTGAGTGTAACAGAGGAAACCTTCTATCTAAATC</genome_strand>
        <mrna_strand>TTTGGTCGAGGCCCTGTGTGCCACTTCTTCCATCTCCGCCAGTGCCGCACTTGGTTTCTTCTGCGGTTTTTCATCTTCACTTTCAACCAAAG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGAGTACAACAACAACAAAAAGGCTCTGATACTTCATTTGATTGGATGTATAGGAGCATATCATTTTGGTGGATGTACGCGTAAGCAAGAGAAACATAATTCTTTTATATTAGTGTGTGGCTCAATTGATATGCTGATAAAAAGTTATCTTTCTGGTTGCAAAGAAACTTCTTTTGCAACCTCTGTCTCATCTGAGATCACGAAACGAGCTTCATGCGACCAGGGTTCTGGTGCTGAATTGTCAGAAATGAGTCCAGAAAAAGATAAATATCCTATTGATGTCTGTATGGAATCTGATTCAAAGGATGGTGATCCTTGTTCCTTAAACAGTCTAGATGGTCCACGACCTTCAACTTTCAGTGCCATGCCTGGAAGTTTAAAGCCCATAGTATATCGTAGGAAAAAGTTCAAACAAAACCCTCGTCCTACTTTCTTCATTGAACCATCAGCTGAAGTTAGGCCTAGCAATGGATGCCCTTCTGAGCTCTGTTCTGAAGTCCATTCANGAACTTTGAAGGAAGGCATAGTTGCTGCTGAGAAATTAGCTACAGCAACTCCTGTTCTTCTGCCTGCTGAGTGTAACAGAGGAAAACTTCTATCTAAATC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0018B07-nGyJi/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E273175" ref_strand="+" ref_description="SGN-E273175 [cLEM-24-H6]">
      <seq>tgccacttcttccatctccgccagtgccgcacttggtttcttctgcggtttttcatcttcactttcaaccaaagggagtacaacaacaacaaaaaggctctgatacttcatttgattggatgtataggagcatatcattttggtggatgtacgcgtaagcaagagaaacataattcttttatattagtgtgtggctcaattgatatgctgataaaaagttatctttctggttgcaaagaaacttcttttgcaacctctgtctcatctgagatcacgaaacgagcttcatgcgaccagggttctggtgctgaattgtcagaaatgagtccagaaaaagataaatatcctattgatgtctgtatggaatctgattcaaaggatggtgatccttgttccttaaacagtctagatggtccacgaccttcaactttcagtgccatgcctggaagtttaaagcccatagtatatcgtaggaaaaagttcaaacaaaaccctcgtcctactttcttcattgaaccatcagctgaagttaggcctagcaatggatgcccttctgagctctgttctgaagtccattc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0018B07-nGyJi/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02SLe0018B07.1" temp_strand="+" temp_description="C02SLe0018B07.1  AC215448.2 htgs_phase:3 submitted_to_sgn_as:C02SLe0018B07 sequenced_by:kribb upload_account_name:korea">
        <position start="125255" stop="128102"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="125555" g_stop="125628" g_length="74"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="74" r_length="74" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="125629" i_stop="127298" i_length="1670">
            <donor d_prob="0.947" d_score="1.00"/>
            <acceptor a_prob="0.969" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="127299" g_stop="127802" g_length="504"/>
          <reference_exon_boundary r_type="cDNA" r_start="75" r_stop="578" r_length="504" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLe0018B07.1" gen_strand="+" ref_id="SGN-E273175" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>578</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0018B07.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E273175" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="125555" e_stop="125628"/>
          <exon e_start="127299" e_stop="127802"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGCCACTTCTTCCATCTCCGCCAGTGCCGCACTTGGTTTCTTCTGCGGTTTTTCATCTTCACTTTCAACCAAAGGTCCATTCTTGAATTGTACTAAACTTTTTTTTGTTTCAAATTCCCCTTTCCCTTTTCTCATATGCAGTACCCTTTTGAAATTTTGATGTTATTTTGCATTGTAAATAGTTAGATTCAAAGCATCTATAGTCCATTGTTGATTAATCTGGTTATGCAATGTCGTTTGATATAATTTACTTTGTGAATGTCTGTTAATGTTATAGAAATACTGCTATAGGTGAATCAGAATTTGTGGGTGACTCTCTATTATCAATTTTTATGTAGGTTAATAGGGTTTTGTTTGATTTTTTTTTGTTATTAGATGTTTACCTTGGTTTCTTGATTCATGTGATTTCTGATGGGTCTTTGTTTCTTGATTTTGTTATGATTTGTGATAGTTGTTAGATATCTGTCTAGTTGCTAGTTGTTCCCTTTGGTGGCAAATCTATAACCCAAAACCCACATTGACTGCTGTGATATGTCAACCTAAACTTATTTGGACCTATAACTATAGATATCAATGTGGGTTCTTTGTTGGAAAACACAATGGTGGATTATTTGATTGAATTGAAACTTGAAAGGGAAATTGCTAAAGTTCTCACCATGTTAAATGAAATCATCATTTGCCTTCTTTGTACTCATGTCTTAAGGATATACATGGGTATGAGTAATTTGGGCAGATCCTTCAAATCACACGAAAACTTCCTAAAAGTTTTAATGTACCTGTACCTGTACCTGATACATACTCCATGCCAGATCCAATCGGAGATAGCTCTATCATATATGCCTTATAGATTTAATGTTCCATTAGGAAAACGAGGACATGACAACTTCTGATAGCATATAGACTTGTTGTCACTTGTCATGAACCAGACAACTGAATGGTATTGCGACGGGACATCTCGCTTGTAATCGTGTAAACCAGGTTTGAATATATGGGACCTACTTTCCCATAAGCAGTGTGTTTACACACTTTGAAGGCCTATAGTCTTAATGGATCCCGTCCCTGAATCAAATGACTGCTACTGAAGGAGCACTGTGTGTGACCAAAAACTTTTATGCAATGAAAATTGGAAACAGCCACAAAATTAGTATCGACGCCTATCCTAAGTGAAAAGAAAAAGTAGAAGTATGACAAATTATCTACTAACAAAAATGTAATAGATACCATTCCCACTGTTTCATTTTATGTAACATTCTTTCATTTTTAGTCGGGTCCAAAAGAATAGGACCTTTCTATAAATGGGAACTCCTTAAATTTAAAAGTCCCATAATGAGATGCTCTTATAACCTCAAGCCCACATGGTACGATTAAGGCCATAAGTTTTAAGGGTACTTTTAATACCTAACAAAAGTTTTCCCTTCTTTCCTAAACTTCGTTCCTTGTCTAACATCACCACATAAAATGAAACATACAGAGTGATTGATTTACATATTTTCATTGTAACTTCATTGTCCATTTTGAGGGACACGTGTTCTTTTTTCCCACGCACATGGTTTTATCAGTTATGATTTCCTTCTTATGCATGTCTACTATTATGTGTTCTTACATGATTTTTGAGAAATCCTACTTATCTTTCCTTTTTAGGGCTGCATTATCCAATATCCTGTAGTTTGAGCAGTAGCATTCCACTTTATATTGATTAATGTTTTGTTCGTCATCTCATTGCAAGTTTCTTCTTTATGATCAGGGAGTACAACAACAACAAAAAGGCTCTGATACTTCATTTGATTGGATGTATAGGAGCATATCATTTTGGTGGATGTACGCGTAAGCAAGAGAAACATAATTCTTTTATATTAGTGTGTGGCTCAATTGATATGCTGATAAAAAGTTATCTTTCTGGTTGCAAAGAAACTTCTTTTGCAACCTCTGTCTCATCTGAGATCACGAAACGAGCTTCATGCGACCAGGGTTCTGGTGCTGAATTGTCAGAAATGAGTCCAGAAAAAGATAAATATCCTATTGATGTCTGTATGGAATCTGATTCAAAGGATGGTGATCCTTGTTCCTTAAACAGTCTAGATGGTCCACGACCTTCAACTTTCAGTGCCATGCCTGGAAGTTTAAAGCCCATAGTATATCGTAGGAAAAAGTTCAAACAAAACCCTCGTCCTACTTTCTTCATTGAACCATCAGCTGAAGTTAGGCCTAGCAATGGATGCCCTTCTGAGCTCTGTTCTGAAGTCCATTC</genome_strand>
        <mrna_strand>TGCCACTTCTTCCATCTCCGCCAGTGCCGCACTTGGTTTCTTCTGCGGTTTTTCATCTTCACTTTCAACCAAAG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGAGTACAACAACAACAAAAAGGCTCTGATACTTCATTTGATTGGATGTATAGGAGCATATCATTTTGGTGGATGTACGCGTAAGCAAGAGAAACATAATTCTTTTATATTAGTGTGTGGCTCAATTGATATGCTGATAAAAAGTTATCTTTCTGGTTGCAAAGAAACTTCTTTTGCAACCTCTGTCTCATCTGAGATCACGAAACGAGCTTCATGCGACCAGGGTTCTGGTGCTGAATTGTCAGAAATGAGTCCAGAAAAAGATAAATATCCTATTGATGTCTGTATGGAATCTGATTCAAAGGATGGTGATCCTTGTTCCTTAAACAGTCTAGATGGTCCACGACCTTCAACTTTCAGTGCCATGCCTGGAAGTTTAAAGCCCATAGTATATCGTAGGAAAAAGTTCAAACAAAACCCTCGTCCTACTTTCTTCATTGAACCATCAGCTGAAGTTAGGCCTAGCAATGGATGCCCTTCTGAGCTCTGTTCTGAAGTCCATTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0018B07-nGyJi/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E316481" ref_strand="+" ref_description="SGN-E316481 [cTOA-25-G9]">
      <seq>ccacttcttccatctccgccagtgccgcacttggtttcttctgcggtttttcatcttcactttcaaccaaagggagtacaacaacaacaaaaaggctctgatacttcatttgattggatgtataggagcatatcattttggtggatgtacgcgtaagcaagagaaacataattcttttatattagtgtgtggctcaattgatatgctgataaaaagttatctttctggttgcaaagaaacttcttttgcaacctctgtctcatctgagatcacgaaacgagcttcatgcgaccagggttctggtgctgaattgtcagaaatgagtccagaaaaagataaatatcctattgatgtctgtatggaatctgattcaaaggatggtgatccttgttccttaaacagtctagatggtccacgaccttcaactttcagtgccatgcctggaagtttaaagcccatagtatatcgtaggaaaaagttcaaacaaaaccctcgtcctactttcttcattgaaccatcagctgaagttaggcctagcaatggatgcccttctgagctctgttctgaagtccattcaggaactttgaaggaaggcatagttgctgctgagaaattagctacagcaactcctgttcttctgcctgctgagtgtaacagaggaaccttctatctaatcaaattctt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0018B07-nGyJi/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02SLe0018B07.1" temp_strand="+" temp_description="C02SLe0018B07.1  AC215448.2 htgs_phase:3 submitted_to_sgn_as:C02SLe0018B07 sequenced_by:kribb upload_account_name:korea">
        <position start="125257" stop="128212"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="125557" g_stop="125628" g_length="72"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="72" r_length="72" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="125629" i_stop="127298" i_length="1670">
            <donor d_prob="0.947" d_score="1.00"/>
            <acceptor a_prob="0.969" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="127299" g_stop="127912" g_length="614"/>
          <reference_exon_boundary r_type="cDNA" r_start="73" r_stop="684" r_length="612" r_score="0.997"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLe0018B07.1" gen_strand="+" ref_id="SGN-E316481" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>686</cumulative_length_of_scored_exons>
        <coverage percentage="1.003" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0018B07.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E316481" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="125557" e_stop="125628"/>
          <exon e_start="127299" e_stop="127912"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCACTTCTTCCATCTCCGCCAGTGCCGCACTTGGTTTCTTCTGCGGTTTTTCATCTTCACTTTCAACCAAAGGTCCATTCTTGAATTGTACTAAACTTTTTTTTGTTTCAAATTCCCCTTTCCCTTTTCTCATATGCAGTACCCTTTTGAAATTTTGATGTTATTTTGCATTGTAAATAGTTAGATTCAAAGCATCTATAGTCCATTGTTGATTAATCTGGTTATGCAATGTCGTTTGATATAATTTACTTTGTGAATGTCTGTTAATGTTATAGAAATACTGCTATAGGTGAATCAGAATTTGTGGGTGACTCTCTATTATCAATTTTTATGTAGGTTAATAGGGTTTTGTTTGATTTTTTTTTGTTATTAGATGTTTACCTTGGTTTCTTGATTCATGTGATTTCTGATGGGTCTTTGTTTCTTGATTTTGTTATGATTTGTGATAGTTGTTAGATATCTGTCTAGTTGCTAGTTGTTCCCTTTGGTGGCAAATCTATAACCCAAAACCCACATTGACTGCTGTGATATGTCAACCTAAACTTATTTGGACCTATAACTATAGATATCAATGTGGGTTCTTTGTTGGAAAACACAATGGTGGATTATTTGATTGAATTGAAACTTGAAAGGGAAATTGCTAAAGTTCTCACCATGTTAAATGAAATCATCATTTGCCTTCTTTGTACTCATGTCTTAAGGATATACATGGGTATGAGTAATTTGGGCAGATCCTTCAAATCACACGAAAACTTCCTAAAAGTTTTAATGTACCTGTACCTGTACCTGATACATACTCCATGCCAGATCCAATCGGAGATAGCTCTATCATATATGCCTTATAGATTTAATGTTCCATTAGGAAAACGAGGACATGACAACTTCTGATAGCATATAGACTTGTTGTCACTTGTCATGAACCAGACAACTGAATGGTATTGCGACGGGACATCTCGCTTGTAATCGTGTAAACCAGGTTTGAATATATGGGACCTACTTTCCCATAAGCAGTGTGTTTACACACTTTGAAGGCCTATAGTCTTAATGGATCCCGTCCCTGAATCAAATGACTGCTACTGAAGGAGCACTGTGTGTGACCAAAAACTTTTATGCAATGAAAATTGGAAACAGCCACAAAATTAGTATCGACGCCTATCCTAAGTGAAAAGAAAAAGTAGAAGTATGACAAATTATCTACTAACAAAAATGTAATAGATACCATTCCCACTGTTTCATTTTATGTAACATTCTTTCATTTTTAGTCGGGTCCAAAAGAATAGGACCTTTCTATAAATGGGAACTCCTTAAATTTAAAAGTCCCATAATGAGATGCTCTTATAACCTCAAGCCCACATGGTACGATTAAGGCCATAAGTTTTAAGGGTACTTTTAATACCTAACAAAAGTTTTCCCTTCTTTCCTAAACTTCGTTCCTTGTCTAACATCACCACATAAAATGAAACATACAGAGTGATTGATTTACATATTTTCATTGTAACTTCATTGTCCATTTTGAGGGACACGTGTTCTTTTTTCCCACGCACATGGTTTTATCAGTTATGATTTCCTTCTTATGCATGTCTACTATTATGTGTTCTTACATGATTTTTGAGAAATCCTACTTATCTTTCCTTTTTAGGGCTGCATTATCCAATATCCTGTAGTTTGAGCAGTAGCATTCCACTTTATATTGATTAATGTTTTGTTCGTCATCTCATTGCAAGTTTCTTCTTTATGATCAGGGAGTACAACAACAACAAAAAGGCTCTGATACTTCATTTGATTGGATGTATAGGAGCATATCATTTTGGTGGATGTACGCGTAAGCAAGAGAAACATAATTCTTTTATATTAGTGTGTGGCTCAATTGATATGCTGATAAAAAGTTATCTTTCTGGTTGCAAAGAAACTTCTTTTGCAACCTCTGTCTCATCTGAGATCACGAAACGAGCTTCATGCGACCAGGGTTCTGGTGCTGAATTGTCAGAAATGAGTCCAGAAAAAGATAAATATCCTATTGATGTCTGTATGGAATCTGATTCAAAGGATGGTGATCCTTGTTCCTTAAACAGTCTAGATGGTCCACGACCTTCAACTTTCAGTGCCATGCCTGGAAGTTTAAAGCCCATAGTATATCGTAGGAAAAAGTTCAAACAAAACCCTCGTCCTACTTTCTTCATTGAACCATCAGCTGAAGTTAGGCCTAGCAATGGATGCCCTTCTGAGCTCTGTTCTGAAGTCCATTCAGGAACTTTGAAGGAAGGCATAGTTGCTGCTGAGAAATTAGCTACAGCAACTCCTGTTCTTCTGCCTGCTGAGTGTAACAGAGGAAACCTTCTATCTAAATCAAATTCTT</genome_strand>
        <mrna_strand>CCACTTCTTCCATCTCCGCCAGTGCCGCACTTGGTTTCTTCTGCGGTTTTTCATCTTCACTTTCAACCAAAG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGAGTACAACAACAACAAAAAGGCTCTGATACTTCATTTGATTGGATGTATAGGAGCATATCATTTTGGTGGATGTACGCGTAAGCAAGAGAAACATAATTCTTTTATATTAGTGTGTGGCTCAATTGATATGCTGATAAAAAGTTATCTTTCTGGTTGCAAAGAAACTTCTTTTGCAACCTCTGTCTCATCTGAGATCACGAAACGAGCTTCATGCGACCAGGGTTCTGGTGCTGAATTGTCAGAAATGAGTCCAGAAAAAGATAAATATCCTATTGATGTCTGTATGGAATCTGATTCAAAGGATGGTGATCCTTGTTCCTTAAACAGTCTAGATGGTCCACGACCTTCAACTTTCAGTGCCATGCCTGGAAGTTTAAAGCCCATAGTATATCGTAGGAAAAAGTTCAAACAAAACCCTCGTCCTACTTTCTTCATTGAACCATCAGCTGAAGTTAGGCCTAGCAATGGATGCCCTTCTGAGCTCTGTTCTGAAGTCCATTCAGGAACTTTGAAGGAAGGCATAGTTGCTGCTGAGAAATTAGCTACAGCAACTCCTGTTCTTCTGCCTGCTGAGTGTAACAGAGG-AACCTTCTATCT-AATCAAATTCTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0018B07-nGyJi/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E312116" ref_strand="+" ref_description="SGN-E312116 [cTOA-11-A19]">
      <seq>ccacttcttccatctccgccagtgccgcacttggtttcttctgcggtttttcatcttcactttcaaccaaagggagtacaacaacaacaaaaaggctctgatacttcatttgattggatgtataggagcatatcattttggtggatgtacgcgtaagcaagagaaacataattcttttatattagtgtgtggctcaattgatatgctgataaaaagttatctttctggttgcaaagaaacttcttttgcaacctctgtctcatctgagatcacgaaacgagcttcatgcgaccagggttctggtgctgaattgtcagaaatgagtccagaaaaagataaatatcctattgatgtctgtatggaatctgattcaaaggatggtgatccttgttccttaaacagtctagatggtccacgaccttcaactttcagtgccatgcctggaagtttaaagcccatagtatatcgtaggaaaaagttcaaacaaaaccctcgtcctactttcttcattgaaccatcagctgaagttaggcctagcaatggatgcccttctgagctctgttctg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0018B07-nGyJi/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02SLe0018B07.1" temp_strand="+" temp_description="C02SLe0018B07.1  AC215448.2 htgs_phase:3 submitted_to_sgn_as:C02SLe0018B07 sequenced_by:kribb upload_account_name:korea">
        <position start="125257" stop="128092"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="125557" g_stop="125628" g_length="72"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="72" r_length="72" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="125629" i_stop="127298" i_length="1670">
            <donor d_prob="0.947" d_score="1.00"/>
            <acceptor a_prob="0.969" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="127299" g_stop="127792" g_length="494"/>
          <reference_exon_boundary r_type="cDNA" r_start="73" r_stop="566" r_length="494" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLe0018B07.1" gen_strand="+" ref_id="SGN-E312116" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>566</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0018B07.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E312116" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="125557" e_stop="125628"/>
          <exon e_start="127299" e_stop="127792"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCACTTCTTCCATCTCCGCCAGTGCCGCACTTGGTTTCTTCTGCGGTTTTTCATCTTCACTTTCAACCAAAGGTCCATTCTTGAATTGTACTAAACTTTTTTTTGTTTCAAATTCCCCTTTCCCTTTTCTCATATGCAGTACCCTTTTGAAATTTTGATGTTATTTTGCATTGTAAATAGTTAGATTCAAAGCATCTATAGTCCATTGTTGATTAATCTGGTTATGCAATGTCGTTTGATATAATTTACTTTGTGAATGTCTGTTAATGTTATAGAAATACTGCTATAGGTGAATCAGAATTTGTGGGTGACTCTCTATTATCAATTTTTATGTAGGTTAATAGGGTTTTGTTTGATTTTTTTTTGTTATTAGATGTTTACCTTGGTTTCTTGATTCATGTGATTTCTGATGGGTCTTTGTTTCTTGATTTTGTTATGATTTGTGATAGTTGTTAGATATCTGTCTAGTTGCTAGTTGTTCCCTTTGGTGGCAAATCTATAACCCAAAACCCACATTGACTGCTGTGATATGTCAACCTAAACTTATTTGGACCTATAACTATAGATATCAATGTGGGTTCTTTGTTGGAAAACACAATGGTGGATTATTTGATTGAATTGAAACTTGAAAGGGAAATTGCTAAAGTTCTCACCATGTTAAATGAAATCATCATTTGCCTTCTTTGTACTCATGTCTTAAGGATATACATGGGTATGAGTAATTTGGGCAGATCCTTCAAATCACACGAAAACTTCCTAAAAGTTTTAATGTACCTGTACCTGTACCTGATACATACTCCATGCCAGATCCAATCGGAGATAGCTCTATCATATATGCCTTATAGATTTAATGTTCCATTAGGAAAACGAGGACATGACAACTTCTGATAGCATATAGACTTGTTGTCACTTGTCATGAACCAGACAACTGAATGGTATTGCGACGGGACATCTCGCTTGTAATCGTGTAAACCAGGTTTGAATATATGGGACCTACTTTCCCATAAGCAGTGTGTTTACACACTTTGAAGGCCTATAGTCTTAATGGATCCCGTCCCTGAATCAAATGACTGCTACTGAAGGAGCACTGTGTGTGACCAAAAACTTTTATGCAATGAAAATTGGAAACAGCCACAAAATTAGTATCGACGCCTATCCTAAGTGAAAAGAAAAAGTAGAAGTATGACAAATTATCTACTAACAAAAATGTAATAGATACCATTCCCACTGTTTCATTTTATGTAACATTCTTTCATTTTTAGTCGGGTCCAAAAGAATAGGACCTTTCTATAAATGGGAACTCCTTAAATTTAAAAGTCCCATAATGAGATGCTCTTATAACCTCAAGCCCACATGGTACGATTAAGGCCATAAGTTTTAAGGGTACTTTTAATACCTAACAAAAGTTTTCCCTTCTTTCCTAAACTTCGTTCCTTGTCTAACATCACCACATAAAATGAAACATACAGAGTGATTGATTTACATATTTTCATTGTAACTTCATTGTCCATTTTGAGGGACACGTGTTCTTTTTTCCCACGCACATGGTTTTATCAGTTATGATTTCCTTCTTATGCATGTCTACTATTATGTGTTCTTACATGATTTTTGAGAAATCCTACTTATCTTTCCTTTTTAGGGCTGCATTATCCAATATCCTGTAGTTTGAGCAGTAGCATTCCACTTTATATTGATTAATGTTTTGTTCGTCATCTCATTGCAAGTTTCTTCTTTATGATCAGGGAGTACAACAACAACAAAAAGGCTCTGATACTTCATTTGATTGGATGTATAGGAGCATATCATTTTGGTGGATGTACGCGTAAGCAAGAGAAACATAATTCTTTTATATTAGTGTGTGGCTCAATTGATATGCTGATAAAAAGTTATCTTTCTGGTTGCAAAGAAACTTCTTTTGCAACCTCTGTCTCATCTGAGATCACGAAACGAGCTTCATGCGACCAGGGTTCTGGTGCTGAATTGTCAGAAATGAGTCCAGAAAAAGATAAATATCCTATTGATGTCTGTATGGAATCTGATTCAAAGGATGGTGATCCTTGTTCCTTAAACAGTCTAGATGGTCCACGACCTTCAACTTTCAGTGCCATGCCTGGAAGTTTAAAGCCCATAGTATATCGTAGGAAAAAGTTCAAACAAAACCCTCGTCCTACTTTCTTCATTGAACCATCAGCTGAAGTTAGGCCTAGCAATGGATGCCCTTCTGAGCTCTGTTCTG</genome_strand>
        <mrna_strand>CCACTTCTTCCATCTCCGCCAGTGCCGCACTTGGTTTCTTCTGCGGTTTTTCATCTTCACTTTCAACCAAAG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGAGTACAACAACAACAAAAAGGCTCTGATACTTCATTTGATTGGATGTATAGGAGCATATCATTTTGGTGGATGTACGCGTAAGCAAGAGAAACATAATTCTTTTATATTAGTGTGTGGCTCAATTGATATGCTGATAAAAAGTTATCTTTCTGGTTGCAAAGAAACTTCTTTTGCAACCTCTGTCTCATCTGAGATCACGAAACGAGCTTCATGCGACCAGGGTTCTGGTGCTGAATTGTCAGAAATGAGTCCAGAAAAAGATAAATATCCTATTGATGTCTGTATGGAATCTGATTCAAAGGATGGTGATCCTTGTTCCTTAAACAGTCTAGATGGTCCACGACCTTCAACTTTCAGTGCCATGCCTGGAAGTTTAAAGCCCATAGTATATCGTAGGAAAAAGTTCAAACAAAACCCTCGTCCTACTTTCTTCATTGAACCATCAGCTGAAGTTAGGCCTAGCAATGGATGCCCTTCTGAGCTCTGTTCTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0018B07-nGyJi/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E338483" ref_strand="+" ref_description="SGN-E338483 [cTOE-15-P11]">
      <seq>ttcttctgcggtttttcatcttcactttcaaccaaagggagtacaacaaccacaaaaaggctctgatacttcatttgattggatgtataggagcatatcattttggtggatgtaccccgtaagcaagagaaacataattcttttatattagtgtgtggctcaattgatatgctgataaaaagttatctttctggttgcaaagaaacttcttttgcaacctctgtctcatctgagatcacgaaacgagcttcatgcgaccagggttctggtgctgaattgtcagaaatgagtccagaaaaagataaatatcctattgatgtctgtatggaatctgattcaaaggatggtgatccttgttccttaaacagtctagatggtccacgaccttcaactttcagtgccatgcctggaagtttaaagcccatagtatatcgtaggaaaaagttcaaacaaaaccctcgtcctactttcttcattgaaccatcagctgaagttaggcctagcaatggatgcccttctgagctct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0018B07-nGyJi/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02SLe0018B07.1" temp_strand="+" temp_description="C02SLe0018B07.1  AC215448.2 htgs_phase:3 submitted_to_sgn_as:C02SLe0018B07 sequenced_by:kribb upload_account_name:korea">
        <position start="125292" stop="128086"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="125592" g_stop="125628" g_length="37"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="37" r_length="37" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="125629" i_stop="127298" i_length="1670">
            <donor d_prob="0.947" d_score="0.00"/>
            <acceptor a_prob="0.969" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="127299" g_stop="127786" g_length="488"/>
          <reference_exon_boundary r_type="cDNA" r_start="38" r_stop="526" r_length="489" r_score="0.992"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLe0018B07.1" gen_strand="+" ref_id="SGN-E338483" ref_strand="+">
        <total_alignment_score>0.992</total_alignment_score>
        <cumulative_length_of_scored_exons>525</cumulative_length_of_scored_exons>
        <coverage percentage="0.998" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0018B07.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E338483" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="125592" e_stop="125628"/>
          <exon e_start="127299" e_stop="127786"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTCTTCTGCGGTTTTTCATCTTCACTTTCAACCAAAGGTCCATTCTTGAATTGTACTAAACTTTTTTTTGTTTCAAATTCCCCTTTCCCTTTTCTCATATGCAGTACCCTTTTGAAATTTTGATGTTATTTTGCATTGTAAATAGTTAGATTCAAAGCATCTATAGTCCATTGTTGATTAATCTGGTTATGCAATGTCGTTTGATATAATTTACTTTGTGAATGTCTGTTAATGTTATAGAAATACTGCTATAGGTGAATCAGAATTTGTGGGTGACTCTCTATTATCAATTTTTATGTAGGTTAATAGGGTTTTGTTTGATTTTTTTTTGTTATTAGATGTTTACCTTGGTTTCTTGATTCATGTGATTTCTGATGGGTCTTTGTTTCTTGATTTTGTTATGATTTGTGATAGTTGTTAGATATCTGTCTAGTTGCTAGTTGTTCCCTTTGGTGGCAAATCTATAACCCAAAACCCACATTGACTGCTGTGATATGTCAACCTAAACTTATTTGGACCTATAACTATAGATATCAATGTGGGTTCTTTGTTGGAAAACACAATGGTGGATTATTTGATTGAATTGAAACTTGAAAGGGAAATTGCTAAAGTTCTCACCATGTTAAATGAAATCATCATTTGCCTTCTTTGTACTCATGTCTTAAGGATATACATGGGTATGAGTAATTTGGGCAGATCCTTCAAATCACACGAAAACTTCCTAAAAGTTTTAATGTACCTGTACCTGTACCTGATACATACTCCATGCCAGATCCAATCGGAGATAGCTCTATCATATATGCCTTATAGATTTAATGTTCCATTAGGAAAACGAGGACATGACAACTTCTGATAGCATATAGACTTGTTGTCACTTGTCATGAACCAGACAACTGAATGGTATTGCGACGGGACATCTCGCTTGTAATCGTGTAAACCAGGTTTGAATATATGGGACCTACTTTCCCATAAGCAGTGTGTTTACACACTTTGAAGGCCTATAGTCTTAATGGATCCCGTCCCTGAATCAAATGACTGCTACTGAAGGAGCACTGTGTGTGACCAAAAACTTTTATGCAATGAAAATTGGAAACAGCCACAAAATTAGTATCGACGCCTATCCTAAGTGAAAAGAAAAAGTAGAAGTATGACAAATTATCTACTAACAAAAATGTAATAGATACCATTCCCACTGTTTCATTTTATGTAACATTCTTTCATTTTTAGTCGGGTCCAAAAGAATAGGACCTTTCTATAAATGGGAACTCCTTAAATTTAAAAGTCCCATAATGAGATGCTCTTATAACCTCAAGCCCACATGGTACGATTAAGGCCATAAGTTTTAAGGGTACTTTTAATACCTAACAAAAGTTTTCCCTTCTTTCCTAAACTTCGTTCCTTGTCTAACATCACCACATAAAATGAAACATACAGAGTGATTGATTTACATATTTTCATTGTAACTTCATTGTCCATTTTGAGGGACACGTGTTCTTTTTTCCCACGCACATGGTTTTATCAGTTATGATTTCCTTCTTATGCATGTCTACTATTATGTGTTCTTACATGATTTTTGAGAAATCCTACTTATCTTTCCTTTTTAGGGCTGCATTATCCAATATCCTGTAGTTTGAGCAGTAGCATTCCACTTTATATTGATTAATGTTTTGTTCGTCATCTCATTGCAAGTTTCTTCTTTATGATCAGGGAGTACAACAACAACAAAAAGGCTCTGATACTTCATTTGATTGGATGTATAGGAGCATATCATTTTGGTGGATGTA-CGCGTAAGCAAGAGAAACATAATTCTTTTATATTAGTGTGTGGCTCAATTGATATGCTGATAAAAAGTTATCTTTCTGGTTGCAAAGAAACTTCTTTTGCAACCTCTGTCTCATCTGAGATCACGAAACGAGCTTCATGCGACCAGGGTTCTGGTGCTGAATTGTCAGAAATGAGTCCAGAAAAAGATAAATATCCTATTGATGTCTGTATGGAATCTGATTCAAAGGATGGTGATCCTTGTTCCTTAAACAGTCTAGATGGTCCACGACCTTCAACTTTCAGTGCCATGCCTGGAAGTTTAAAGCCCATAGTATATCGTAGGAAAAAGTTCAAACAAAACCCTCGTCCTACTTTCTTCATTGAACCATCAGCTGAAGTTAGGCCTAGCAATGGATGCCCTTCTGAGCTCT</genome_strand>
        <mrna_strand>TTCTTCTGCGGTTTTTCATCTTCACTTTCAACCAAAG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGAGTACAACAACCACAAAAAGGCTCTGATACTTCATTTGATTGGATGTATAGGAGCATATCATTTTGGTGGATGTACCCCGTAAGCAAGAGAAACATAATTCTTTTATATTAGTGTGTGGCTCAATTGATATGCTGATAAAAAGTTATCTTTCTGGTTGCAAAGAAACTTCTTTTGCAACCTCTGTCTCATCTGAGATCACGAAACGAGCTTCATGCGACCAGGGTTCTGGTGCTGAATTGTCAGAAATGAGTCCAGAAAAAGATAAATATCCTATTGATGTCTGTATGGAATCTGATTCAAAGGATGGTGATCCTTGTTCCTTAAACAGTCTAGATGGTCCACGACCTTCAACTTTCAGTGCCATGCCTGGAAGTTTAAAGCCCATAGTATATCGTAGGAAAAAGTTCAAACAAAACCCTCGTCCTACTTTCTTCATTGAACCATCAGCTGAAGTTAGGCCTAGCAATGGATGCCCTTCTGAGCTCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0018B07-nGyJi/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E737524" ref_strand="+" ref_description="SGN-E737524 [LC10AH01]">
      <seq>tcggcacgaggctgtctcatctgagatcacgaaacgagcttcatgcgaccagggttctggtgctgaattgtcagaaatgagtccagaaaaagataaatatcctattgatgtctgtatggaatctgattcaaaggatggtgatccttgttccttaaacagtctagatggtccacgaccttcaactttcagtgccatgcctggaagtttaaagcccatagtatatcgtaggaaaaagttcaaacaaaaccctcgtcctactttcttcattgaaccatcagctgaagttaggcctagcaatggatgcccttctgagctctgttctgaagtccattcaggaactttgaaggaaggcatagttgctgctgagaaattagctacagcaactcctgttcttctgcctgctgagtgtaacagaggaaaccttctatctaaatcaaattcttgtgatggtagacctgaaggggaagagcagtgctctgaagcagcatcaagaagtgatatgcaaaggacttcaaatgtttgcataaatgatagccattcgtcatcaaagtgtaatttggattttgggtcttcttcattgaagacgcttgtggatgatgctggtgagtgctcctcatctggtgctttatttcctgaaagattgggtaataatatgccagaaaaggatatatgcacagcaattcttagaggttatgggttgcttgaaaatgttgtggttacaaaactcggagcatcaacagaagacttttataccagttctgacaactgctgtttaatctcatgcaaagcctgtgattgt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0018B07-nGyJi/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02SLe0018B07.1" temp_strand="+" temp_description="C02SLe0018B07.1  AC215448.2 htgs_phase:3 submitted_to_sgn_as:C02SLe0018B07 sequenced_by:kribb upload_account_name:korea">
        <position start="127181" stop="128568"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="127471" g_stop="128268" g_length="798"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="799" r_length="799" r_score="0.990"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLe0018B07.1" gen_strand="+" ref_id="SGN-E737524" ref_strand="+">
        <total_alignment_score>0.990</total_alignment_score>
        <cumulative_length_of_scored_exons>798</cumulative_length_of_scored_exons>
        <coverage percentage="0.999" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0018B07.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E737524" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="127471" e_stop="128268"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTGCAACCT-CTGTCTCATCTGAGATCACGAAACGAGCTTCATGCGACCAGGGTTCTGGTGCTGAATTGTCAGAAATGAGTCCAGAAAAAGATAAATATCCTATTGATGTCTGTATGGAATCTGATTCAAAGGATGGTGATCCTTGTTCCTTAAACAGTCTAGATGGTCCACGACCTTCAACTTTCAGTGCCATGCCTGGAAGTTTAAAGCCCATAGTATATCGTAGGAAAAAGTTCAAACAAAACCCTCGTCCTACTTTCTTCATTGAACCATCAGCTGAAGTTAGGCCTAGCAATGGATGCCCTTCTGAGCTCTGTTCTGAAGTCCATTCAGGAACTTTGAAGGAAGGCATAGTTGCTGCTGAGAAATTAGCTACAGCAACTCCTGTTCTTCTGCCTGCTGAGTGTAACAGAGGAAACCTTCTATCTAAATCAAATTCTTGTGATGGTAGACCTGAAGGGGAAGAGCAGTGCTCTGAAGCAGCATCAAGAAGTGATATGCAAAGGACTTCAAATGTTTGCATAAATGATAGCCATTCGTCATCAAAGTGTAATTTGGATTTTGGGTCTTCTTCATTGAAGACGCTTGTGGATGATGCTGGTGAGTGCTCCTCATCTGGTGCTTTATTTCCTGAAAGATTGGGTAATAATATGCCAGAAAAGGATATATGCACAGCAATTCTTAGAGGTTATGGGTTGCTTGAAAATGTTGTGGTTACAAAACTCGGAGCATCAACAGAAGACTTTTATACCAGTTCTGACAACTGCTGTTTAATCTCATGCAAAGCCTGTGATTGT</genome_strand>
        <mrna_strand>TCGGCACGAGGCTGTCTCATCTGAGATCACGAAACGAGCTTCATGCGACCAGGGTTCTGGTGCTGAATTGTCAGAAATGAGTCCAGAAAAAGATAAATATCCTATTGATGTCTGTATGGAATCTGATTCAAAGGATGGTGATCCTTGTTCCTTAAACAGTCTAGATGGTCCACGACCTTCAACTTTCAGTGCCATGCCTGGAAGTTTAAAGCCCATAGTATATCGTAGGAAAAAGTTCAAACAAAACCCTCGTCCTACTTTCTTCATTGAACCATCAGCTGAAGTTAGGCCTAGCAATGGATGCCCTTCTGAGCTCTGTTCTGAAGTCCATTCAGGAACTTTGAAGGAAGGCATAGTTGCTGCTGAGAAATTAGCTACAGCAACTCCTGTTCTTCTGCCTGCTGAGTGTAACAGAGGAAACCTTCTATCTAAATCAAATTCTTGTGATGGTAGACCTGAAGGGGAAGAGCAGTGCTCTGAAGCAGCATCAAGAAGTGATATGCAAAGGACTTCAAATGTTTGCATAAATGATAGCCATTCGTCATCAAAGTGTAATTTGGATTTTGGGTCTTCTTCATTGAAGACGCTTGTGGATGATGCTGGTGAGTGCTCCTCATCTGGTGCTTTATTTCCTGAAAGATTGGGTAATAATATGCCAGAAAAGGATATATGCACAGCAATTCTTAGAGGTTATGGGTTGCTTGAAAATGTTGTGGTTACAAAACTCGGAGCATCAACAGAAGACTTTTATACCAGTTCTGACAACTGCTGTTTAATCTCATGCAAAGCCTGTGATTGT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0018B07-nGyJi/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E689238" ref_strand="+" ref_description="SGN-E689238 [t3_tus_80_L05]">
      <seq>ccgtataagataaatganagccattcgncatcaaagggnacctttaattttgggtcttcttcgttgaagacgcttgtggatgatgctggtgagtgctcctcatctggtgctttatttcctgaaagattgggtaataatatgccagaaaaggatatatgcacagcaattcttagaggttatgggttgcttgaaaatgttgtggttacaaaactcggagcatcaacagaagacttttataccagttctgacaactgctgtttaatctcatgcaaagcctgtgattgttcagaatctacagtgaagatgctaatctgtgataactgtgatgatgcatattatttatcgtgctgcaaaccccataaaaagatagcacccgaggatgagtggttttgccaaacttgtttgattaagaagcagagagtgctcaagaaatcatcttgtaatgagagttctagcaattctccatctgaaggtgaatcaggacctacagctctcatgttgaaggacaccggttataaaactcgtgttcgtattagcaaaaagtatcaagctgagattcctgactggacaggtccagcgacagatgacgctggttgtagtggtgaaccatttgaaatcacaccttcagagaatctctgcttgcctaaacaatcttctaacgaaaatatgaggattagctctattggcaattggcttcagtgccggcaggtcaacgaaggttttgggaaacgtgtggatggaagtatctgtggg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0018B07-nGyJi/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02SLe0018B07.1" temp_strand="+" temp_description="C02SLe0018B07.1  AC215448.2 htgs_phase:3 submitted_to_sgn_as:C02SLe0018B07 sequenced_by:kribb upload_account_name:korea">
        <position start="127686" stop="131917"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="127983" g_stop="128567" g_length="585"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="584" r_length="584" r_score="0.971"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="128568" i_stop="131356" i_length="2789">
            <donor d_prob="0.983" d_score="1.00"/>
            <acceptor a_prob="0.986" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="131357" g_stop="131417" g_length="61"/>
          <reference_exon_boundary r_type="cDNA" r_start="585" r_stop="645" r_length="61" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="131418" i_stop="131509" i_length="92">
            <donor d_prob="0.988" d_score="1.00"/>
            <acceptor a_prob="0.000" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="131510" g_stop="131617" g_length="108"/>
          <reference_exon_boundary r_type="cDNA" r_start="646" r_stop="753" r_length="108" r_score="0.991"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLe0018B07.1" gen_strand="+" ref_id="SGN-E689238" ref_strand="+">
        <total_alignment_score>0.976</total_alignment_score>
        <cumulative_length_of_scored_exons>754</cumulative_length_of_scored_exons>
        <coverage percentage="1.001" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0018B07.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E689238" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="127983" e_stop="128567"/>
          <exon e_start="131357" e_stop="131417"/>
          <exon e_start="131510" e_stop="131617"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAATGTTTGCATAAATGATAGCCATTCGTCATCAAAGTGTAATTTGGATTTTGGGTCTTCTTCATTGAAGACGCTTGTGGATGATGCTGGTGAGTGCTCCTCATCTGGTGCTTTATTTCCTGAAAGATTGGGTAATAATATGCCAGAAAAGGATATATGCACAGCAATTCTTAGAGGTTATGGGTTGCTTGAAAATGTTGTGGTTACAAAACTCGGAGCATCAACAGAAGACTTTTATACCAGTTCTGACAACTGCTGTTTAATCTCATGCAAAGCCTGTGATTGTTCAGAATCTACAGTGAAGATGCTAATCTGTGATAACTGTGATGATGCATATCATTTATCGTGCTGCAAACCCCATAAAAAGATAGCACCCGAGGATGAGTGGTTTTGCCAAACTTGTTTGATTAAGAAGCAGAGAGTGCTCAAGAAATCATCTTGTAATGAGAGTTCTAGCAATTCTCCATCTGAAGGTGAATCAGGACCTACAGCTCTCATGTTGAAGGACACCGGTTATAAAACTCGTGTTCGTATTAGCAAAAAGTATCAAGCTGAGATTCCTGACTGGACAGGTCCAGCGACAGAGTATGTTCTACACATCTATCTTTTTTTAATTGTTGTGGATCTTCCTATTGACTTAAGGGAAGTGAAAATGACAACTAGCTTTAAATGGTTTTGTCATGTAGGCAGATAAAACATAATGGGGTATCTCTCATTCTGTTTCTACCTGCTGTAACAGTTTGCACTTATCATTTCAGTTGTTGTGTCTTTTTATTTAATATAGATTATAGATTATAGATGTGATGGATGAGTCCAACTTACAAGTAGTTACAACATAGAGAATTTACACTAAAACATGTTGCTACAAGTACTCTTTTGTCGATGCTAATGTGGGAATTGCATTACGCAACAAAATCTTCACTAATCTCCGCAAGGGAATTGCCTAATCCCTTAGACATCTTCTGTTTCTTTCATCCATGCTGCCACACGAGCTTTGAAAGAGCTACTTCCCTTGTTCCTGTTCTCCATCTCTTCTTTGGAGCTTCCATTATAATAGAAACTTATTGATGGTTCTTGACGTCACCATTTGATACCAAACATACCATACATGTTAACCTATTCGCAATAGTGCAATTGCATAGTCAAGTACTAAGTAGTTAACATTCTCTTTCAGTTCCTTTACATTAGGCCGAATCTTCGACAAACAGCTAAACTTGTTCAAAGCATTTCATAGAGCTAACTAGACTAAGTCTATTACATATTGAACACTAGACGTATGCCCAAACAGTACCTACATGACACATTGCAGATATGGTGCATAACATGGTTATTGATAATGAGCGCTTGAACATGTTAGAAAATGAGTTGTCATGGACTTTATTCTTTCTCATTTCATTCTTTTCTCACTCCTCTCAACAAATAAGACCGATCCCATCATTTTCATGCTTGAACTCCACCAACGAACCATCCCTCCACCCCCTGCTGACCCACTTCATCCATAGACACACGGTTCAGCCCTTCTCTTTTGTCTGTCTGTCTGTCTCTCTCTATACACACACACACACACACACACAACCACCTTTGTACAGAAACACCACAATTCCACTCACACACTGCTCTCTCTATTTTTTGTTGCATCTCTGTTGAATGCCATATTCAAAAAGCCACCATCTTCAGCCGCCCCATCTGCTTGCTCCTTTCATTGGATAAGAGAAACTAAAGCGAGACCTTTGACAATTAAGAGAGGTATTTCTCCACTCCAAGCGATTGGGGTGCTACCTCTTTCCCCTACAATGACAGGGAAATATCGTTCAATTGATAAGTTAGAAGGTGATAAAATTTTCTCCGGTTGAAGTCCTTTGTTAAGTGTAAATGAATAAAGCAACAGTCATGATAGAGTGCAAAGACGAGGGCTATTTAGCTATGATTCTTCGTGGAGAAGAAGCAATCAGTATCAAAGTTGGGTAGTTGATTGCCATTACAGTTGAAGGAAGATTGTATTGCAAAATTTAGTGACTACCAACATTCAAATCAGATTCTATATCTTCAAATTTGATTGTCCTTCTACCACAAAAAAGGGAGAACAGATAAATGGAGAAGAAGAGAGGAAGAAGAAGGGAGAATGTTTTCTCTTAGCTCTTAGATGTAGGTGGGTCTGGATTCAATAGTGGAAAGATAAGAGAAGGAATTGTCTTTTAGGGAAGAAAGATAACACATAGTGAAGTGGGTTGAGAATAATGAGGTCTCAGGTTCACATCAGTGGAGAGACAAAAACAGTACGAGATTTCTTCCACTTGTCCGAACCTTGAGGATAGGGTTACCCATCACCTATGGTGGTGTGAGGTAGCAAGTACCTTGTGGAACTAGTCGAGGTATGTGCAAGCTGGTCCGGCTATCACAATTATTAGAAAAAGATGAATGGGGAGGGGAGTTGGAAAAATAAACTTTTTCCCTTTTTGGATCAGAAGTTCTTTTTTTGTGGGATTTTGTGGGTTTAAGAGCTACATGTCTTTCTTCCAAGGCTTCTTTGTCACATCTGTGTGTAAACTGCTCACATTCTATTTTCTTGATTGTTGCAGCATGTGTCTAATAGGTAAAATTTGAGCACAAGTAGTTTAGATGGCTAGATGAAAAATTCGGACAAGTTTCGATGTTGTCTGTGTATTCACCCTTAACATTAAGCATCAATTGACTTAAATGGTCCTCCTCAAACTTTTGCTGTAATGATGGCACCCAATCAGCTCTTCCATGTGAAAAAGCACTTTTCCATCGATGTTTTCCGGATTCATCATTTTCAGTTGTCATCTGTATTACTTAGTTTATGTATGAATCACTCCTGGTTTTCTCATAGATCTACCTAATGAAACTCTATACGCAAAGAAAGAAATCTTTGGAGATAATTTTTCTTTAAAGGAACTTTGTAATGTCTTTAAAATATTCAAAGCCTATGGTGGCATGTTTCGTGCATCTACAACTCAAAATTCTGTTGGTATTTTTTCTCTTATTTCATAACCTATAATTCTATACCTGCTAGTGCTAGCACACCTTATCTGAAGTCCTAAACTTAAGTATGATTTCTTGAATGCTCGGTGGAATATTAATACTCAGGAGTTTAGCTCAAGAAAAATGGATTAGTGTTAGTGGGGGTAACTATGGCATGTTCATGTTTATTTATCTTCTTAATACCATGGAAACTTATAATGCTCACAGGTTTCGTGCTTCACATGTTCTGATAAGTTCTACTCTAATTTAAGAAAATCTTGAGTGTAGGAATGCTATTAATATTTACTGTTATGATATTGTTATCTATTTGAGCTGTTTGTATCTTTTGAGTGTGTCTGCTGCATTGGTTTTGATGATAAGATTTGATGCAGTGACGCTGGTTGTAGTGGTGAACCATTTGAAATCACACCTTCAGAGAATCTCTGCTTGCCTGTAAGTCCCACTCCTGAAATTTATCTTTCCATACAGCTGCCTGCTCAGTTCTAGGAAAAATTATTTACGAATAACCAAATTATATTGGTCAGAAACAATCTTCTAACGAACATATGAGGATTAGCTCTATTGGCAATTGGCTTCAGTGCCGGCAGGTCAACGAAGGTTTTGGGAAACGTGTGGATGGAAGTATCTGTGGG</genome_strand>
        <mrna_strand>CCGTATAAG-ATAAATGANAGCCATTCGNCATCAAAGGGNACCTTTAATTTTGGGTCTTCTTCGTTGAAGACGCTTGTGGATGATGCTGGTGAGTGCTCCTCATCTGGTGCTTTATTTCCTGAAAGATTGGGTAATAATATGCCAGAAAAGGATATATGCACAGCAATTCTTAGAGGTTATGGGTTGCTTGAAAATGTTGTGGTTACAAAACTCGGAGCATCAACAGAAGACTTTTATACCAGTTCTGACAACTGCTGTTTAATCTCATGCAAAGCCTGTGATTGTTCAGAATCTACAGTGAAGATGCTAATCTGTGATAACTGTGATGATGCATATTATTTATCGTGCTGCAAACCCCATAAAAAGATAGCACCCGAGGATGAGTGGTTTTGCCAAACTTGTTTGATTAAGAAGCAGAGAGTGCTCAAGAAATCATCTTGTAATGAGAGTTCTAGCAATTCTCCATCTGAAGGTGAATCAGGACCTACAGCTCTCATGTTGAAGGACACCGGTTATAAAACTCGTGTTCGTATTAGCAAAAAGTATCAAGCTGAGATTCCTGACTGGACAGGTCCAGCGACAGA.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGACGCTGGTTGTAGTGGTGAACCATTTGAAATCACACCTTCAGAGAATCTCTGCTTGCCT............................................................................................AAACAATCTTCTAACGAAAATATGAGGATTAGCTCTATTGGCAATTGGCTTCAGTGCCGGCAGGTCAACGAAGGTTTTGGGAAACGTGTGGATGGAAGTATCTGTGGG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0018B07-nGyJi/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E326436" ref_strand="+" ref_description="SGN-E326436 [cTOC-14-O16]">
      <seq>tttgcataaatgatatccattcgtcatcaaagtgtaatttagatggtgggtcttcttcgttgaagacgcttgtggatgatgctggtgagtgctcctcatctggtgctttatttcctgaaagattgggtaataatatgccagaaaaggatatatgcacagcaattcttagaggttatgggttgcttgaaaatgttgtggttacaaaactcggagcatcaacagaagacttttataccagttctgacaactgctgtttaatctcatgcaaagcctgtgattgttcagaatctacagtgaagatgctaatctgtgataactgtgatgatgcatatcatttatcgtgctgcaaaccccataaaaagatagcacccgaggatgagtggttttgccaaacttgtttgattaagaagcagagagtgctcaagaaatcatcttgtaatgagagttctagcaattctccatctgaaggtgaatcaggacctacagctctcatgttgaaggacaccggttataaaactcgtgttcgtattagcaaaaagtatcaagctgagattcctgactggacaagtccagcgacagatgacgctggttgtagtggtg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0018B07-nGyJi/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02SLe0018B07.1" temp_strand="+" temp_description="C02SLe0018B07.1  AC215448.2 htgs_phase:3 submitted_to_sgn_as:C02SLe0018B07 sequenced_by:kribb upload_account_name:korea">
        <position start="127688" stop="131676"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="127988" g_stop="128567" g_length="580"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="580" r_length="580" r_score="0.990"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="128568" i_stop="131356" i_length="2789">
            <donor d_prob="0.983" d_score="0.98"/>
            <acceptor a_prob="0.986" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="131357" g_stop="131376" g_length="20"/>
          <reference_exon_boundary r_type="cDNA" r_start="581" r_stop="600" r_length="20" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLe0018B07.1" gen_strand="+" ref_id="SGN-E326436" ref_strand="+">
        <total_alignment_score>0.990</total_alignment_score>
        <cumulative_length_of_scored_exons>600</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0018B07.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E326436" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="127988" e_stop="128567"/>
          <exon e_start="131357" e_stop="131376"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTGCATAAATGATAGCCATTCGTCATCAAAGTGTAATTTGGATTTTGGGTCTTCTTCATTGAAGACGCTTGTGGATGATGCTGGTGAGTGCTCCTCATCTGGTGCTTTATTTCCTGAAAGATTGGGTAATAATATGCCAGAAAAGGATATATGCACAGCAATTCTTAGAGGTTATGGGTTGCTTGAAAATGTTGTGGTTACAAAACTCGGAGCATCAACAGAAGACTTTTATACCAGTTCTGACAACTGCTGTTTAATCTCATGCAAAGCCTGTGATTGTTCAGAATCTACAGTGAAGATGCTAATCTGTGATAACTGTGATGATGCATATCATTTATCGTGCTGCAAACCCCATAAAAAGATAGCACCCGAGGATGAGTGGTTTTGCCAAACTTGTTTGATTAAGAAGCAGAGAGTGCTCAAGAAATCATCTTGTAATGAGAGTTCTAGCAATTCTCCATCTGAAGGTGAATCAGGACCTACAGCTCTCATGTTGAAGGACACCGGTTATAAAACTCGTGTTCGTATTAGCAAAAAGTATCAAGCTGAGATTCCTGACTGGACAGGTCCAGCGACAGAGTATGTTCTACACATCTATCTTTTTTTAATTGTTGTGGATCTTCCTATTGACTTAAGGGAAGTGAAAATGACAACTAGCTTTAAATGGTTTTGTCATGTAGGCAGATAAAACATAATGGGGTATCTCTCATTCTGTTTCTACCTGCTGTAACAGTTTGCACTTATCATTTCAGTTGTTGTGTCTTTTTATTTAATATAGATTATAGATTATAGATGTGATGGATGAGTCCAACTTACAAGTAGTTACAACATAGAGAATTTACACTAAAACATGTTGCTACAAGTACTCTTTTGTCGATGCTAATGTGGGAATTGCATTACGCAACAAAATCTTCACTAATCTCCGCAAGGGAATTGCCTAATCCCTTAGACATCTTCTGTTTCTTTCATCCATGCTGCCACACGAGCTTTGAAAGAGCTACTTCCCTTGTTCCTGTTCTCCATCTCTTCTTTGGAGCTTCCATTATAATAGAAACTTATTGATGGTTCTTGACGTCACCATTTGATACCAAACATACCATACATGTTAACCTATTCGCAATAGTGCAATTGCATAGTCAAGTACTAAGTAGTTAACATTCTCTTTCAGTTCCTTTACATTAGGCCGAATCTTCGACAAACAGCTAAACTTGTTCAAAGCATTTCATAGAGCTAACTAGACTAAGTCTATTACATATTGAACACTAGACGTATGCCCAAACAGTACCTACATGACACATTGCAGATATGGTGCATAACATGGTTATTGATAATGAGCGCTTGAACATGTTAGAAAATGAGTTGTCATGGACTTTATTCTTTCTCATTTCATTCTTTTCTCACTCCTCTCAACAAATAAGACCGATCCCATCATTTTCATGCTTGAACTCCACCAACGAACCATCCCTCCACCCCCTGCTGACCCACTTCATCCATAGACACACGGTTCAGCCCTTCTCTTTTGTCTGTCTGTCTGTCTCTCTCTATACACACACACACACACACACACAACCACCTTTGTACAGAAACACCACAATTCCACTCACACACTGCTCTCTCTATTTTTTGTTGCATCTCTGTTGAATGCCATATTCAAAAAGCCACCATCTTCAGCCGCCCCATCTGCTTGCTCCTTTCATTGGATAAGAGAAACTAAAGCGAGACCTTTGACAATTAAGAGAGGTATTTCTCCACTCCAAGCGATTGGGGTGCTACCTCTTTCCCCTACAATGACAGGGAAATATCGTTCAATTGATAAGTTAGAAGGTGATAAAATTTTCTCCGGTTGAAGTCCTTTGTTAAGTGTAAATGAATAAAGCAACAGTCATGATAGAGTGCAAAGACGAGGGCTATTTAGCTATGATTCTTCGTGGAGAAGAAGCAATCAGTATCAAAGTTGGGTAGTTGATTGCCATTACAGTTGAAGGAAGATTGTATTGCAAAATTTAGTGACTACCAACATTCAAATCAGATTCTATATCTTCAAATTTGATTGTCCTTCTACCACAAAAAAGGGAGAACAGATAAATGGAGAAGAAGAGAGGAAGAAGAAGGGAGAATGTTTTCTCTTAGCTCTTAGATGTAGGTGGGTCTGGATTCAATAGTGGAAAGATAAGAGAAGGAATTGTCTTTTAGGGAAGAAAGATAACACATAGTGAAGTGGGTTGAGAATAATGAGGTCTCAGGTTCACATCAGTGGAGAGACAAAAACAGTACGAGATTTCTTCCACTTGTCCGAACCTTGAGGATAGGGTTACCCATCACCTATGGTGGTGTGAGGTAGCAAGTACCTTGTGGAACTAGTCGAGGTATGTGCAAGCTGGTCCGGCTATCACAATTATTAGAAAAAGATGAATGGGGAGGGGAGTTGGAAAAATAAACTTTTTCCCTTTTTGGATCAGAAGTTCTTTTTTTGTGGGATTTTGTGGGTTTAAGAGCTACATGTCTTTCTTCCAAGGCTTCTTTGTCACATCTGTGTGTAAACTGCTCACATTCTATTTTCTTGATTGTTGCAGCATGTGTCTAATAGGTAAAATTTGAGCACAAGTAGTTTAGATGGCTAGATGAAAAATTCGGACAAGTTTCGATGTTGTCTGTGTATTCACCCTTAACATTAAGCATCAATTGACTTAAATGGTCCTCCTCAAACTTTTGCTGTAATGATGGCACCCAATCAGCTCTTCCATGTGAAAAAGCACTTTTCCATCGATGTTTTCCGGATTCATCATTTTCAGTTGTCATCTGTATTACTTAGTTTATGTATGAATCACTCCTGGTTTTCTCATAGATCTACCTAATGAAACTCTATACGCAAAGAAAGAAATCTTTGGAGATAATTTTTCTTTAAAGGAACTTTGTAATGTCTTTAAAATATTCAAAGCCTATGGTGGCATGTTTCGTGCATCTACAACTCAAAATTCTGTTGGTATTTTTTCTCTTATTTCATAACCTATAATTCTATACCTGCTAGTGCTAGCACACCTTATCTGAAGTCCTAAACTTAAGTATGATTTCTTGAATGCTCGGTGGAATATTAATACTCAGGAGTTTAGCTCAAGAAAAATGGATTAGTGTTAGTGGGGGTAACTATGGCATGTTCATGTTTATTTATCTTCTTAATACCATGGAAACTTATAATGCTCACAGGTTTCGTGCTTCACATGTTCTGATAAGTTCTACTCTAATTTAAGAAAATCTTGAGTGTAGGAATGCTATTAATATTTACTGTTATGATATTGTTATCTATTTGAGCTGTTTGTATCTTTTGAGTGTGTCTGCTGCATTGGTTTTGATGATAAGATTTGATGCAGTGACGCTGGTTGTAGTGGTG</genome_strand>
        <mrna_strand>TTTGCATAAATGATATCCATTCGTCATCAAAGTGTAATTTAGATGGTGGGTCTTCTTCGTTGAAGACGCTTGTGGATGATGCTGGTGAGTGCTCCTCATCTGGTGCTTTATTTCCTGAAAGATTGGGTAATAATATGCCAGAAAAGGATATATGCACAGCAATTCTTAGAGGTTATGGGTTGCTTGAAAATGTTGTGGTTACAAAACTCGGAGCATCAACAGAAGACTTTTATACCAGTTCTGACAACTGCTGTTTAATCTCATGCAAAGCCTGTGATTGTTCAGAATCTACAGTGAAGATGCTAATCTGTGATAACTGTGATGATGCATATCATTTATCGTGCTGCAAACCCCATAAAAAGATAGCACCCGAGGATGAGTGGTTTTGCCAAACTTGTTTGATTAAGAAGCAGAGAGTGCTCAAGAAATCATCTTGTAATGAGAGTTCTAGCAATTCTCCATCTGAAGGTGAATCAGGACCTACAGCTCTCATGTTGAAGGACACCGGTTATAAAACTCGTGTTCGTATTAGCAAAAAGTATCAAGCTGAGATTCCTGACTGGACAAGTCCAGCGACAGA.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGACGCTGGTTGTAGTGGTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0018B07-nGyJi/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E325925" ref_strand="+" ref_description="SGN-E325925 [cTOC-12-M12]">
      <seq>tttgcattaattatagccattcgtcatcaaagtgtaatttaggttttgggtcttcttcgttgaagacccttgtggatgatgctggtgagtgctcctcatctggtgctttatttcctgaaagattgggtaataatatgccagaaaaggatatatgcacagcaattcttagaggttatgggttgcttgaaaatgttgtggttacaaaactcggagcatcaacagaagacttttataccagttctgacaactgctgtttaatctcatgcaaagcctgtgattgttcagaatctacagtgaagatgctaatctgtgataactgtgatgatgcatatcatttatcgtgctgcaaaccccataaaaagatagcacccgaggatgagtggttttgccaaacttgtttgattaagaagcagagagtgctcaagaaatcatcttgtaatgagagttctagcaattcttcatctgaaggtgaatcaagacctacagctctcatgttgaaggacaccg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0018B07-nGyJi/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02SLe0018B07.1" temp_strand="+" temp_description="C02SLe0018B07.1  AC215448.2 htgs_phase:3 submitted_to_sgn_as:C02SLe0018B07 sequenced_by:kribb upload_account_name:korea">
        <position start="127688" stop="128794"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="127988" g_stop="128494" g_length="507"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="507" r_length="507" r_score="0.984"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLe0018B07.1" gen_strand="+" ref_id="SGN-E325925" ref_strand="+">
        <total_alignment_score>0.984</total_alignment_score>
        <cumulative_length_of_scored_exons>507</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0018B07.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E325925" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="127988" e_stop="128494"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTGCATAAATGATAGCCATTCGTCATCAAAGTGTAATTTGGATTTTGGGTCTTCTTCATTGAAGACGCTTGTGGATGATGCTGGTGAGTGCTCCTCATCTGGTGCTTTATTTCCTGAAAGATTGGGTAATAATATGCCAGAAAAGGATATATGCACAGCAATTCTTAGAGGTTATGGGTTGCTTGAAAATGTTGTGGTTACAAAACTCGGAGCATCAACAGAAGACTTTTATACCAGTTCTGACAACTGCTGTTTAATCTCATGCAAAGCCTGTGATTGTTCAGAATCTACAGTGAAGATGCTAATCTGTGATAACTGTGATGATGCATATCATTTATCGTGCTGCAAACCCCATAAAAAGATAGCACCCGAGGATGAGTGGTTTTGCCAAACTTGTTTGATTAAGAAGCAGAGAGTGCTCAAGAAATCATCTTGTAATGAGAGTTCTAGCAATTCTCCATCTGAAGGTGAATCAGGACCTACAGCTCTCATGTTGAAGGACACCG</genome_strand>
        <mrna_strand>TTTGCATTAATTATAGCCATTCGTCATCAAAGTGTAATTTAGGTTTTGGGTCTTCTTCGTTGAAGACCCTTGTGGATGATGCTGGTGAGTGCTCCTCATCTGGTGCTTTATTTCCTGAAAGATTGGGTAATAATATGCCAGAAAAGGATATATGCACAGCAATTCTTAGAGGTTATGGGTTGCTTGAAAATGTTGTGGTTACAAAACTCGGAGCATCAACAGAAGACTTTTATACCAGTTCTGACAACTGCTGTTTAATCTCATGCAAAGCCTGTGATTGTTCAGAATCTACAGTGAAGATGCTAATCTGTGATAACTGTGATGATGCATATCATTTATCGTGCTGCAAACCCCATAAAAAGATAGCACCCGAGGATGAGTGGTTTTGCCAAACTTGTTTGATTAAGAAGCAGAGAGTGCTCAAGAAATCATCTTGTAATGAGAGTTCTAGCAATTCTTCATCTGAAGGTGAATCAAGACCTACAGCTCTCATGTTGAAGGACACCG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0018B07-nGyJi/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E547996" ref_strand="-" ref_description="SGN-E547996 [TUS-57-A2](-)">
      <seq>gttctctctctaaagtgtaatttagattttgggtcttcttcgttgaagacgcttgtggatgatgctggtgagtgctcctcatctggtgctttatttcctgaaagattgggtaataatatgccagaaaaggatatatgcacagcaattcttagaggttatgggttgcttgaaaatgttgtggttacaaaactcggagcatcaacagaagacttttataccagttctgacaactgctgtttaatctcatgcaaagcctgtgattgttcagaatctacagtgaagatgctaatctgtgataactgtgatgatgcatatcatttatcgtgctgcaaaccccataaaaagatagcacccgaggatgagtggttttgccaaacttgtttgattaagaagcagagagtgctcaagaaatcatcttgtaatgagagttctagcaattctccatctgaaggtgaatcaggacctacagctctcatgttgaaggacaccggttataaaactcgtgttcgtattagcaaaaagtatcaagctgagattcctgactggacaggtccagcgacagatgacgctggttgtagtggtgaaccatttgaaatcacaccttcagagaatctctgcttgcctaaacaatcttctaacgaacatatgaggattagctctattggcaattggcttcagtgccggcaggtca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0018B07-nGyJi/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02SLe0018B07.1" temp_strand="+" temp_description="C02SLe0018B07.1  AC215448.2 htgs_phase:3 submitted_to_sgn_as:C02SLe0018B07 sequenced_by:kribb upload_account_name:korea">
        <position start="127708" stop="131876"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="128006" g_stop="128567" g_length="562"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="563" r_length="563" r_score="0.984"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="128568" i_stop="131356" i_length="2789">
            <donor d_prob="0.983" d_score="1.00"/>
            <acceptor a_prob="0.986" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="131357" g_stop="131417" g_length="61"/>
          <reference_exon_boundary r_type="cDNA" r_start="564" r_stop="624" r_length="61" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="131418" i_stop="131509" i_length="92">
            <donor d_prob="0.988" d_score="1.00"/>
            <acceptor a_prob="0.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="131510" g_stop="131576" g_length="67"/>
          <reference_exon_boundary r_type="cDNA" r_start="625" r_stop="691" r_length="67" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLe0018B07.1" gen_strand="+" ref_id="SGN-E547996" ref_strand="-">
        <total_alignment_score>0.987</total_alignment_score>
        <cumulative_length_of_scored_exons>690</cumulative_length_of_scored_exons>
        <coverage percentage="0.999" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0018B07.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E547996" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="128006" e_stop="128567"/>
          <exon e_start="131357" e_stop="131417"/>
          <exon e_start="131510" e_stop="131576"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATTCGTCATC-AAAGTGTAATTTGGATTTTGGGTCTTCTTCATTGAAGACGCTTGTGGATGATGCTGGTGAGTGCTCCTCATCTGGTGCTTTATTTCCTGAAAGATTGGGTAATAATATGCCAGAAAAGGATATATGCACAGCAATTCTTAGAGGTTATGGGTTGCTTGAAAATGTTGTGGTTACAAAACTCGGAGCATCAACAGAAGACTTTTATACCAGTTCTGACAACTGCTGTTTAATCTCATGCAAAGCCTGTGATTGTTCAGAATCTACAGTGAAGATGCTAATCTGTGATAACTGTGATGATGCATATCATTTATCGTGCTGCAAACCCCATAAAAAGATAGCACCCGAGGATGAGTGGTTTTGCCAAACTTGTTTGATTAAGAAGCAGAGAGTGCTCAAGAAATCATCTTGTAATGAGAGTTCTAGCAATTCTCCATCTGAAGGTGAATCAGGACCTACAGCTCTCATGTTGAAGGACACCGGTTATAAAACTCGTGTTCGTATTAGCAAAAAGTATCAAGCTGAGATTCCTGACTGGACAGGTCCAGCGACAGAGTATGTTCTACACATCTATCTTTTTTTAATTGTTGTGGATCTTCCTATTGACTTAAGGGAAGTGAAAATGACAACTAGCTTTAAATGGTTTTGTCATGTAGGCAGATAAAACATAATGGGGTATCTCTCATTCTGTTTCTACCTGCTGTAACAGTTTGCACTTATCATTTCAGTTGTTGTGTCTTTTTATTTAATATAGATTATAGATTATAGATGTGATGGATGAGTCCAACTTACAAGTAGTTACAACATAGAGAATTTACACTAAAACATGTTGCTACAAGTACTCTTTTGTCGATGCTAATGTGGGAATTGCATTACGCAACAAAATCTTCACTAATCTCCGCAAGGGAATTGCCTAATCCCTTAGACATCTTCTGTTTCTTTCATCCATGCTGCCACACGAGCTTTGAAAGAGCTACTTCCCTTGTTCCTGTTCTCCATCTCTTCTTTGGAGCTTCCATTATAATAGAAACTTATTGATGGTTCTTGACGTCACCATTTGATACCAAACATACCATACATGTTAACCTATTCGCAATAGTGCAATTGCATAGTCAAGTACTAAGTAGTTAACATTCTCTTTCAGTTCCTTTACATTAGGCCGAATCTTCGACAAACAGCTAAACTTGTTCAAAGCATTTCATAGAGCTAACTAGACTAAGTCTATTACATATTGAACACTAGACGTATGCCCAAACAGTACCTACATGACACATTGCAGATATGGTGCATAACATGGTTATTGATAATGAGCGCTTGAACATGTTAGAAAATGAGTTGTCATGGACTTTATTCTTTCTCATTTCATTCTTTTCTCACTCCTCTCAACAAATAAGACCGATCCCATCATTTTCATGCTTGAACTCCACCAACGAACCATCCCTCCACCCCCTGCTGACCCACTTCATCCATAGACACACGGTTCAGCCCTTCTCTTTTGTCTGTCTGTCTGTCTCTCTCTATACACACACACACACACACACACAACCACCTTTGTACAGAAACACCACAATTCCACTCACACACTGCTCTCTCTATTTTTTGTTGCATCTCTGTTGAATGCCATATTCAAAAAGCCACCATCTTCAGCCGCCCCATCTGCTTGCTCCTTTCATTGGATAAGAGAAACTAAAGCGAGACCTTTGACAATTAAGAGAGGTATTTCTCCACTCCAAGCGATTGGGGTGCTACCTCTTTCCCCTACAATGACAGGGAAATATCGTTCAATTGATAAGTTAGAAGGTGATAAAATTTTCTCCGGTTGAAGTCCTTTGTTAAGTGTAAATGAATAAAGCAACAGTCATGATAGAGTGCAAAGACGAGGGCTATTTAGCTATGATTCTTCGTGGAGAAGAAGCAATCAGTATCAAAGTTGGGTAGTTGATTGCCATTACAGTTGAAGGAAGATTGTATTGCAAAATTTAGTGACTACCAACATTCAAATCAGATTCTATATCTTCAAATTTGATTGTCCTTCTACCACAAAAAAGGGAGAACAGATAAATGGAGAAGAAGAGAGGAAGAAGAAGGGAGAATGTTTTCTCTTAGCTCTTAGATGTAGGTGGGTCTGGATTCAATAGTGGAAAGATAAGAGAAGGAATTGTCTTTTAGGGAAGAAAGATAACACATAGTGAAGTGGGTTGAGAATAATGAGGTCTCAGGTTCACATCAGTGGAGAGACAAAAACAGTACGAGATTTCTTCCACTTGTCCGAACCTTGAGGATAGGGTTACCCATCACCTATGGTGGTGTGAGGTAGCAAGTACCTTGTGGAACTAGTCGAGGTATGTGCAAGCTGGTCCGGCTATCACAATTATTAGAAAAAGATGAATGGGGAGGGGAGTTGGAAAAATAAACTTTTTCCCTTTTTGGATCAGAAGTTCTTTTTTTGTGGGATTTTGTGGGTTTAAGAGCTACATGTCTTTCTTCCAAGGCTTCTTTGTCACATCTGTGTGTAAACTGCTCACATTCTATTTTCTTGATTGTTGCAGCATGTGTCTAATAGGTAAAATTTGAGCACAAGTAGTTTAGATGGCTAGATGAAAAATTCGGACAAGTTTCGATGTTGTCTGTGTATTCACCCTTAACATTAAGCATCAATTGACTTAAATGGTCCTCCTCAAACTTTTGCTGTAATGATGGCACCCAATCAGCTCTTCCATGTGAAAAAGCACTTTTCCATCGATGTTTTCCGGATTCATCATTTTCAGTTGTCATCTGTATTACTTAGTTTATGTATGAATCACTCCTGGTTTTCTCATAGATCTACCTAATGAAACTCTATACGCAAAGAAAGAAATCTTTGGAGATAATTTTTCTTTAAAGGAACTTTGTAATGTCTTTAAAATATTCAAAGCCTATGGTGGCATGTTTCGTGCATCTACAACTCAAAATTCTGTTGGTATTTTTTCTCTTATTTCATAACCTATAATTCTATACCTGCTAGTGCTAGCACACCTTATCTGAAGTCCTAAACTTAAGTATGATTTCTTGAATGCTCGGTGGAATATTAATACTCAGGAGTTTAGCTCAAGAAAAATGGATTAGTGTTAGTGGGGGTAACTATGGCATGTTCATGTTTATTTATCTTCTTAATACCATGGAAACTTATAATGCTCACAGGTTTCGTGCTTCACATGTTCTGATAAGTTCTACTCTAATTTAAGAAAATCTTGAGTGTAGGAATGCTATTAATATTTACTGTTATGATATTGTTATCTATTTGAGCTGTTTGTATCTTTTGAGTGTGTCTGCTGCATTGGTTTTGATGATAAGATTTGATGCAGTGACGCTGGTTGTAGTGGTGAACCATTTGAAATCACACCTTCAGAGAATCTCTGCTTGCCTGTAAGTCCCACTCCTGAAATTTATCTTTCCATACAGCTGCCTGCTCAGTTCTAGGAAAAATTATTTACGAATAACCAAATTATATTGGTCAGAAACAATCTTCTAACGAACATATGAGGATTAGCTCTATTGGCAATTGGCTTCAGTGCCGGCAGGTCA</genome_strand>
        <mrna_strand>GTTCTCTCTCTAAAGTGTAATTTAGATTTTGGGTCTTCTTCGTTGAAGACGCTTGTGGATGATGCTGGTGAGTGCTCCTCATCTGGTGCTTTATTTCCTGAAAGATTGGGTAATAATATGCCAGAAAAGGATATATGCACAGCAATTCTTAGAGGTTATGGGTTGCTTGAAAATGTTGTGGTTACAAAACTCGGAGCATCAACAGAAGACTTTTATACCAGTTCTGACAACTGCTGTTTAATCTCATGCAAAGCCTGTGATTGTTCAGAATCTACAGTGAAGATGCTAATCTGTGATAACTGTGATGATGCATATCATTTATCGTGCTGCAAACCCCATAAAAAGATAGCACCCGAGGATGAGTGGTTTTGCCAAACTTGTTTGATTAAGAAGCAGAGAGTGCTCAAGAAATCATCTTGTAATGAGAGTTCTAGCAATTCTCCATCTGAAGGTGAATCAGGACCTACAGCTCTCATGTTGAAGGACACCGGTTATAAAACTCGTGTTCGTATTAGCAAAAAGTATCAAGCTGAGATTCCTGACTGGACAGGTCCAGCGACAGA.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGACGCTGGTTGTAGTGGTGAACCATTTGAAATCACACCTTCAGAGAATCTCTGCTTGCCT............................................................................................AAACAATCTTCTAACGAACATATGAGGATTAGCTCTATTGGCAATTGGCTTCAGTGCCGGCAGGTCA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0018B07-nGyJi/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E538073" ref_strand="-" ref_description="SGN-E538073 [TUS-57-A2]">
      <seq>tatctgtggaaagtggcgaagggcgccgctatttgaagttcaaacagataattgggagtgcttccgttctgtcctttgggatccagctcacgccgattgtgctgtacctcaagaactagagacggaggaagttctgaagcaattgaagtatatggagatgttgaaacaccggctggtagttaagaggcgcaaattgaatcaaacctcaggtgctggctcacggttcttgacaaagaaatgagaagatacaggcttcatgtacggaaatgttcatcttgtacatttaagcataaaaattttggacaattggagtagtactacatgagattttcatcacagtattctgatgtaattgcttcagaaacatagttgtacaatttagaaggtgcaaggaatcagctgcaaagtcgacttgatctttcctggcttcacttcatcacagtacgctgatgtaattgcttcagaaacataattgtacaatttagtaggcgcaaggaatcagctgcaaactcgacttgatctttcctggcttcacttcatctcttagtccatctatctcttctcttttacgtttcgcattgtcagggctgacaaattaacatttcactttcttcgcccttatgtcacatttctgtaatgccttgatgaatttgtgaggccctggtttagtcattgcaggatagagagcaggttgtgaggatatggggaatttgtactcgtgatgacttaatgttagtgcatatttatgtttctatttttctctctggtataaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0018B07-nGyJi/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02SLe0018B07.1" temp_strand="+" temp_description="C02SLe0018B07.1  AC215448.2 htgs_phase:3 submitted_to_sgn_as:C02SLe0018B07 sequenced_by:kribb upload_account_name:korea">
        <position start="131801" stop="135876"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="132106" g_stop="132196" g_length="91"/>
          <reference_exon_boundary r_type="cDNA" r_start="22" r_stop="112" r_length="91" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="132197" i_stop="133452" i_length="1256">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.991" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="133453" g_stop="133500" g_length="48"/>
          <reference_exon_boundary r_type="cDNA" r_start="113" r_stop="160" r_length="48" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="133501" i_stop="134964" i_length="1464">
            <donor d_prob="0.979" d_score="1.00"/>
            <acceptor a_prob="0.987" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="134965" g_stop="135576" g_length="612"/>
          <reference_exon_boundary r_type="cDNA" r_start="161" r_stop="772" r_length="612" r_score="0.997"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="773" polyA_stop="786"/>
      <MATCH_line gen_id="C02SLe0018B07.1" gen_strand="+" ref_id="SGN-E538073" ref_strand="-">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>751</cumulative_length_of_scored_exons>
        <coverage percentage="0.955" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0018B07.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E538073" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="132106" e_stop="132196"/>
          <exon e_start="133453" e_stop="133500"/>
          <exon e_start="134965" e_stop="135576"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGCGCCGCTATTTGAAGTTCAAACAGATAATTGGGAGTGCTTCCGTTCTGTCCTTTGGGATCCAGCTCACGCCGATTGTGCTGTACCTCAAGTATGTGAGTTTTTTTCAGTCCAGATGTTGTGTTCAACATCTTTTCTTCAACTTAACTCATTAACTTGATTCATTCCTTCCCCATTACCATTCCTCGCTCTATGTTTCTTTTCTTCCCCATCCCTGATCTTGCTTCTAGATCTATTGCATTTTGTTTTTGTTAGTTTTGGAGAATTATTTTTTTGTTGAGATTAAGGCGTTTGCTTCCAAAGCTGTCTAGCTGTTGCACAGATTTTATGCTGGCATGTGTAAGAAAGAAATACTTATATCTTTGAGTTTATGTTGAAGAATCATTCAAGTGCTATAATAGCTTCAGTGTTTTTCATCATCATCTCGGGGAAGATGCTTAGTGTTAATATTAAGTGCGGCCATTATCCCTCTTTGGGCTAGTATATTTGCTATGTTCGATTATTTGAAGTTCAAACAGATAATTGGGAGTGCTTCCGTTCTGTCCTTTGGGATCCAGCTCTATATGAGATAGATCTATTGCATATTTGCATTTTGTTTTTGTTAGTTTGGAGAATTAGTTTTTTGGTGAGATTAAGGCGTTTGCTTCCAAAGTTGTCTAGCTGTTGCACAGATTTTATGCTAGCATGTGTCAGAAAGAAATACTTATATTTTTGAGTTTATATTGAAGAGTCATTCAAGTGCTATAATAGCTTCAGTGTTTTTCATCATCATCTCGGGGAAGATGCTTAGTGTAATATTAAGTGAGGCCATTATCCCTCTTTGGGCTAGTATTTTGCTATGTTCATATCCACTCTTCTCATGTCCCTAAAAAGATGGAGGTTTATACTGAAACGTATACAGTAATATTTAAACTAAGCTTTTTCTGTGGACTCTTACATGTATGGAATGATTAAACCTTTGATACTCTAAATAATTTTTCTAGAAGCAATGAAATACATGTGGATTGGAAATCCTAGAAGTGCCATAACACGGTCATAAAAAAAAAGTCCTACAAGTTCCATGACATTGATATTATGGCATTGCTGCATGTTTTTACTGATCTTTGGGTTTTTCATTTGCTATATTGCCCATTTCATTGAGATCTATCCTTATTAATAACAACACATATCCAGTGTAATCCAACAAGTGGGATATTGGGAGGGTGGTGTGTACGCATCCTTACCCCTACCATGTGAAGGTAGAGAGGCTGTTTCCACTAGACTTTTGAGTCTTGGCTCAAGTAAAGCATATAATATTTCTTAAATTGTTTTTCTGATCGCTATTCTTTGTCTCTCACTCTGGCTCAGGAACTAGAGACGGAGGAAGTTCTGAAGCAATTGAAGTATATGGAGATGGTATATCAGCAAACCTTATTATATCACTCTTTTCCTGTTTTGATAAATGGATGAGTCACTTATATGCTTTATTTAGCAAGAGGTGTAGGTAAGAAATAATATAATGCAAAAGATCGACCCCATCAGCCAAATTATATACATGACTAAAAAATTTCTGTCTTCTGGTGTTTTACATTCTTCTAAAATAGAAAAATTCTTTTCAAATGCAATTATGTTTCTCAACTATTTCTGTTACATAATCTGTTTAGAAAATGAGTTAATGCAAAGTCACAGCAATTCTCTATTTCCTTTGTACTCGATGGGGTTTCTGCGAGCTACTGTTTTTGTATCCCGCTGTCTCTGCCTCTTGTACACCAAGGTGTTCGTTCCTTTTGTTATTAAAATAGTTTTCTCGTTGAAGAAGATATATCTAAACTTCCTTTGGTGATTGTATTAGATACTATCCATCTTGTCCTATTTCTCTTTAAGTGGAGTAAGGTCTTATTCTCCTACTAGTCGCCTCCCTGTGCACAAAATGGAACCCTGCAGGATTCTGGCCCCTCTATACTATTGGACAGCTTTAAGTTTGAGATGTGCTGTAGTAAACTAGTTGTGCAGAGTCCCAATTTACTACTATTGTACAAGACAAACAGCAAAGAGAAACTAGGATATAGGCTTTGCGCAACATGTTTTCCTTGGTCATGTTACCAGTTCCAAAAAAATTAATATGGTTTCCTTGGACAAGGAAAAATAAGTTGGATTTGATTTCTCTCTCTCATTTGGTAATGCATGACCAACGACGAGATGTGTGTCACAATTAAAGAAAGATTTTTATGTAACTACTTCAGGTTACCCAGGACATCACCTTATATAGGAGGGTGTGGAGCACGCATAGTAGGGTAGAAGGTTAGTAGGCAGTTGAGTGTTGTCTTGCTTTTCGTGGGTTTAGGTTTGTTGGTGTTTGTTGTTGTACTGGTTGTATTATTGTACTTCTTGCTTTTGATATCTATCACTGTTTGTTGTTTATTGTGTTTCAATTATGGCACTATTTTGTGTTCTTGTTCCTTTCTTGTAGGATTTGTACTGCTTCCCTTGTTAATTTCTATGTTTTCTTATTCTTTGTGCTTGGATTTGCTACACTTGAGATGATGGTCTTTTGGAAATACCTCTCTACCTCCATGAGGTAGTGGTAAGGTCTGTTTACTTTGTACTCTTCCTAGACCCCACTGGTGGGATTCCATTGGATATGTTATTGTAACTTTTTAGTATAGTTTTATTTGCTATTTTTTCCCTTTATGAACTGTATCTAAATTGTCGGAAAAGGGGGTGCCCATTTAAGTAGTGAATTACTGATGGTGGATCCTTGTCCTACAAATGATCTGTGTTGTTTTCCCTTACAATTGTTGTTTAATTTGCGTTGTATACTTTCCTGACCAACTTATGAAGGTATAGAATATTGAACCTAGTGTTGTTCCTTCTGTTTAGTTGAAACACCGGCTGGTAGTTAAGAGGCGCAAATTGAATCAAACCTCAGGTGCTGGCTCACGGTTCTTGACAAAGAAATGAGAAGATACAGGCTTCATGTACGGAAATGTTCATCTTGTACATTTAAGCATAAAAATTTTGGATAATTGGAGTAGTACTACATGAGATTTTCATCACAGTATTCTGATTTAATTGCTTCAGAAACATAGTTGTACAATTTAGAAGGTGCAAGGAATCAGCTGCAAAGTCGACTTGATCTTTCCTGGCTTCACTTCATCACAGTACGCTGATGTAATTGCTTCAGAAACATAATTGTACAATTTAGTAGGCGCAAGGAATCAGCTGCAAACTCGACTTGATCTTTCCTGGCTTCACTTCATCTCTTAGTCCATCTATCTCTTCTCTTTTACGTTTCGCATTGTCAGGGCTGACAAATTAACATTTCACTTTCTTCGCCCTTATGTCACATTTCTGTAATGCCTTGATGAATTTGTGAGGCCCTGGTTTAGTCATTGCAGGATAGAGAGCAGGTTGTGAGGATATGGGGAATTTGTACTCGTGATGACTTAATGTTAGTGCATATTTATGTTTCTATTTTTCTCTCTGGTATAA</genome_strand>
        <mrna_strand>GGCGCCGCTATTTGAAGTTCAAACAGATAATTGGGAGTGCTTCCGTTCTGTCCTTTGGGATCCAGCTCACGCCGATTGTGCTGTACCTCAA........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAACTAGAGACGGAGGAAGTTCTGAAGCAATTGAAGTATATGGAGATG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTGAAACACCGGCTGGTAGTTAAGAGGCGCAAATTGAATCAAACCTCAGGTGCTGGCTCACGGTTCTTGACAAAGAAATGAGAAGATACAGGCTTCATGTACGGAAATGTTCATCTTGTACATTTAAGCATAAAAATTTTGGACAATTGGAGTAGTACTACATGAGATTTTCATCACAGTATTCTGATGTAATTGCTTCAGAAACATAGTTGTACAATTTAGAAGGTGCAAGGAATCAGCTGCAAAGTCGACTTGATCTTTCCTGGCTTCACTTCATCACAGTACGCTGATGTAATTGCTTCAGAAACATAATTGTACAATTTAGTAGGCGCAAGGAATCAGCTGCAAACTCGACTTGATCTTTCCTGGCTTCACTTCATCTCTTAGTCCATCTATCTCTTCTCTTTTACGTTTCGCATTGTCAGGGCTGACAAATTAACATTTCACTTTCTTCGCCCTTATGTCACATTTCTGTAATGCCTTGATGAATTTGTGAGGCCCTGGTTTAGTCATTGCAGGATAGAGAGCAGGTTGTGAGGATATGGGGAATTTGTACTCGTGATGACTTAATGTTAGTGCATATTTATGTTTCTATTTTTCTCTCTGGTATAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0018B07-nGyJi/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E268418" ref_strand="-" ref_description="SGN-E268418 [cLEI-13-L17]">
      <seq>gtagtactacatgagattttcatcacagtattctgatgtaattgcttcagaaacatagttgtacaatttagaaggtgcaaggaatcagctgcaaagtcgacttgatctttcctggcttcacttcatcacagtacgctgatgtaattgcttcagaaacataattgtacaatttagtaggcgcaaggaatcagctgcaaactcgacttgatctttcctggcttcacttcatctcttagtccatctatctcttctcttttacgtttcgcattgtcagggctgacaaattaacatttcactttcttcgcccttatgtcacatttctgtaatgccttgatgaatttgtgaggccctggtttagtcattgcaggatagagagcaggttgtgaggatatggggaatttgtactcgtgatgacttaatgttagtgcatatttatgtttctatttttctctctggtataaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0018B07-nGyJi/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02SLe0018B07.1" temp_strand="+" temp_description="C02SLe0018B07.1  AC215448.2 htgs_phase:3 submitted_to_sgn_as:C02SLe0018B07 sequenced_by:kribb upload_account_name:korea">
        <position start="134816" stop="135876"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="135116" g_stop="135576" g_length="461"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="461" r_length="461" r_score="0.998"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="462" polyA_stop="474"/>
      <MATCH_line gen_id="C02SLe0018B07.1" gen_strand="+" ref_id="SGN-E268418" ref_strand="-">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>461</cumulative_length_of_scored_exons>
        <coverage percentage="0.973" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0018B07.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E268418" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="135116" e_stop="135576"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTAGTACTACATGAGATTTTCATCACAGTATTCTGATTTAATTGCTTCAGAAACATAGTTGTACAATTTAGAAGGTGCAAGGAATCAGCTGCAAAGTCGACTTGATCTTTCCTGGCTTCACTTCATCACAGTACGCTGATGTAATTGCTTCAGAAACATAATTGTACAATTTAGTAGGCGCAAGGAATCAGCTGCAAACTCGACTTGATCTTTCCTGGCTTCACTTCATCTCTTAGTCCATCTATCTCTTCTCTTTTACGTTTCGCATTGTCAGGGCTGACAAATTAACATTTCACTTTCTTCGCCCTTATGTCACATTTCTGTAATGCCTTGATGAATTTGTGAGGCCCTGGTTTAGTCATTGCAGGATAGAGAGCAGGTTGTGAGGATATGGGGAATTTGTACTCGTGATGACTTAATGTTAGTGCATATTTATGTTTCTATTTTTCTCTCTGGTATAA</genome_strand>
        <mrna_strand>GTAGTACTACATGAGATTTTCATCACAGTATTCTGATGTAATTGCTTCAGAAACATAGTTGTACAATTTAGAAGGTGCAAGGAATCAGCTGCAAAGTCGACTTGATCTTTCCTGGCTTCACTTCATCACAGTACGCTGATGTAATTGCTTCAGAAACATAATTGTACAATTTAGTAGGCGCAAGGAATCAGCTGCAAACTCGACTTGATCTTTCCTGGCTTCACTTCATCTCTTAGTCCATCTATCTCTTCTCTTTTACGTTTCGCATTGTCAGGGCTGACAAATTAACATTTCACTTTCTTCGCCCTTATGTCACATTTCTGTAATGCCTTGATGAATTTGTGAGGCCCTGGTTTAGTCATTGCAGGATAGAGAGCAGGTTGTGAGGATATGGGGAATTTGTACTCGTGATGACTTAATGTTAGTGCATATTTATGTTTCTATTTTTCTCTCTGGTATAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0018B07-nGyJi/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E215519" ref_strand="+" ref_description="SGN-E215519 [cLEL-20-K19](-)">
      <seq>gtgcaaggaatcagctgcaaagtcgacttgatctttcctggcttcacttcatcacagtacgctgatgtaattgcttcagaaacataattgtacaatttagtaggcgcaaggaatcagctgcaaactcgacttgatctttcctggcttcacttcatctcttagtccatctatctcttctcttttacgtttcgcattgtcagggctgacaaattaacatttcactttcttcgcccttatgtcacatttctgtaatgccttgatgaatttgtgaggccctggtttagtcattgcaggatagagagcaggttgtgaggatatggggaatttgtactcgtgatgacttaatgttagtgcatatttatgtttcaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0018B07-nGyJi/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02SLe0018B07.1" temp_strand="+" temp_description="C02SLe0018B07.1  AC215448.2 htgs_phase:3 submitted_to_sgn_as:C02SLe0018B07 sequenced_by:kribb upload_account_name:korea">
        <position start="134890" stop="135858"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="135190" g_stop="135557" g_length="368"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="368" r_length="368" r_score="0.997"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="369" polyA_stop="384"/>
      <MATCH_line gen_id="C02SLe0018B07.1" gen_strand="+" ref_id="SGN-E215519" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>368</cumulative_length_of_scored_exons>
        <coverage percentage="0.958" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0018B07.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E215519" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="135190" e_stop="135557"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTGCAAGGAATCAGCTGCAAAGTCGACTTGATCTTTCCTGGCTTCACTTCATCACAGTACGCTGATGTAATTGCTTCAGAAACATAATTGTACAATTTAGTAGGCGCAAGGAATCAGCTGCAAACTCGACTTGATCTTTCCTGGCTTCACTTCATCTCTTAGTCCATCTATCTCTTCTCTTTTACGTTTCGCATTGTCAGGGCTGACAAATTAACATTTCACTTTCTTCGCCCTTATGTCACATTTCTGTAATGCCTTGATGAATTTGTGAGGCCCTGGTTTAGTCATTGCAGGATAGAGAGCAGGTTGTGAGGATATGGGGAATTTGTACTCGTGATGACTTAATGTTAGTGCATATTTATGTTTCT</genome_strand>
        <mrna_strand>GTGCAAGGAATCAGCTGCAAAGTCGACTTGATCTTTCCTGGCTTCACTTCATCACAGTACGCTGATGTAATTGCTTCAGAAACATAATTGTACAATTTAGTAGGCGCAAGGAATCAGCTGCAAACTCGACTTGATCTTTCCTGGCTTCACTTCATCTCTTAGTCCATCTATCTCTTCTCTTTTACGTTTCGCATTGTCAGGGCTGACAAATTAACATTTCACTTTCTTCGCCCTTATGTCACATTTCTGTAATGCCTTGATGAATTTGTGAGGCCCTGGTTTAGTCATTGCAGGATAGAGAGCAGGTTGTGAGGATATGGGGAATTTGTACTCGTGATGACTTAATGTTAGTGCATATTTATGTTTCA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
    <total_number_ESTs_reported>73</total_number_ESTs_reported>
    </alignment_module>
  <PGL_module xmlns="http://www.genomethreader.org/GTH_output/PGL_module/">
    <predicted_gene_location>
      <PGL_line PGL_serial="1" PGL_strand="+" PGL_start="9012" PGL_stop="9297"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="9012" e_stop="9297"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.909"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.909">
            <gDNA_exon_boundary e_start="9012" e_stop="9297" e_length="286"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="9012" stop="9297"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E355114" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="1" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>TTAGGTTCGTTGGTCTCATCACACAAGAACGAGTCTAGTAGAGTCTTAAGGAACGGTAGGGGGACGCCTTTACTTTTCTTTGAGAGGCTATAAGACTTTAGGAAAATTCCATTCTTTCATTCTTTCTTTCGTGCTATTACTTGGGTCCAATTGGTATCTAGGTGATACAAATTGGTATCTGACCATCTTCACTCTATTTCGCAGATGGTTAGAACAAGAGCAACAACCGCGCCAACATCAACATCAGCAAGACAAGATGCGTCTGAGCCAGCCACTGAGACTGTAG</gDNA_template>
            <first_frame> L  G  S  L  V  S  S  H  K  N  E  S  S  R  V  L  R  N  G  R  G  T  P  L  L  F  F  E  R  L  *  D  F  R  K  I  P  F  F  H  S  F  F  R  A  I  T  W  V  Q  L  V  S  R  *  Y  K  L  V  S  D  H  L  H  S  I  S  Q  M  V  R  T  R  A  T  T  A  P  T  S  T  S  A  R  Q  D  A  S  E  P  A  T  E  T  V  </first_frame>
            <second_frame>  *  V  R  W  S  H  H  T  R  T  S  L  V  E  S  *  G  T  V  G  G  R  L  Y  F  S  L  R  G  Y  K  T  L  G  K  F  H  S  F  I  L  S  F  V  L  L  L  G  S  N  W  Y  L  G  D  T  N  W  Y  L  T  I  F  T  L  F  R  R  W  L  E  Q  E  Q  Q  P  R  Q  H  Q  H  Q  Q  D  K  M  R  L  S  Q  P  L  R  L  * </second_frame>
            <third_frame>   R  F  V  G  L  I  T  Q  E  R  V  *  *  S  L  K  E  R  *  G  D  A  F  T  F  L  *  E  A  I  R  L  *  E  N  S  I  L  S  F  F  L  S  C  Y  Y  L  G  P  I  G  I  *  V  I  Q  I  G  I  *  P  S  S  L  Y  F  A  D  G  *  N  K  S  N  N  R  A  N  I  N  I  S  K  T  R  C  V  *  A  S  H  *  D  C   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02SLe0018B07.1" strand="+"/>
                <serials PGL_serial="1" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="9061" stop="9297"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>234</number_coding_nucleotides>
                  <number_encoded_amino_acids>78</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>GTVGGRLYFSLRGYKTLGKFHSFILSFVLLLGSNWYLGDTNWYLTIFTLFRRWLEQEQQPRQHQHQQDKMRLSQPLRL*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="2" PGL_strand="-" PGL_start="9736" PGL_stop="9304"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="9736" e_stop="9304"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.901"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.901">
            <gDNA_exon_boundary e_start="9736" e_stop="9304" e_length="433"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="9736" stop="9304"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E352180" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="2" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>CCCTCGAAGACTGGAGGTTTCAATTTCAAAAACTTACTGAAAAGTTCATGCTGATCATTTGTCATTATAGGCCCTGTAGTCAGACGAGGAAATGTGCCTATTTCCAATGAGGCATCCATGCGGTGAGCCATAGTAGCCGCATGTTGTACCTCCGGAACCTGAGGTGCTGGTGCAGAAAACACTGGAGGCGCTTGGCCTTGATCAGATAACCCGCTAAGATAAGCAAGAACCTGATTGATCATCTCTGGGGTAGGTTGGGGTGGCAATTCCTCATTCTGCACTTGTTCATTCTCCCCATCCTCCCCTTCTCTTACTACTTCCTCAGTCGGTGGAGGAGTCACCGCCCTAGTACCAGATGGGCCAGGCGTTCGTCCTTTTCCTCTAGAGGACGTCCTCCCGCGACCTCTACCGCGGCCTCTTGCCACTGCTCCTC</gDNA_template>
            <first_frame> P  S  K  T  G  G  F  N  F  K  N  L  L  K  S  S  C  *  S  F  V  I  I  G  P  V  V  R  R  G  N  V  P  I  S  N  E  A  S  M  R  *  A  I  V  A  A  C  C  T  S  G  T  *  G  A  G  A  E  N  T  G  G  A  W  P  *  S  D  N  P  L  R  *  A  R  T  *  L  I  I  S  G  V  G  W  G  G  N  S  S  F  C  T  C  S  F  S  P  S  S  P  S  L  T  T  S  S  V  G  G  G  V  T  A  L  V  P  D  G  P  G  V  R  P  F  P  L  E  D  V  L  P  R  P  L  P  R  P  L  A  T  A  P  </first_frame>
            <second_frame>  P  R  R  L  E  V  S  I  S  K  T  Y  *  K  V  H  A  D  H  L  S  L  *  A  L  *  S  D  E  E  M  C  L  F  P  M  R  H  P  C  G  E  P  *  *  P  H  V  V  P  P  E  P  E  V  L  V  Q  K  T  L  E  A  L  G  L  D  Q  I  T  R  *  D  K  Q  E  P  D  *  S  S  L  G  *  V  G  V  A  I  P  H  S  A  L  V  H  S  P  H  P  P  L  L  L  L  L  P  Q  S  V  E  E  S  P  P  *  Y  Q  M  G  Q  A  F  V  L  F  L  *  R  T  S  S  R  D  L  Y  R  G  L  L  P  L  L  L </second_frame>
            <third_frame>   L  E  D  W  R  F  Q  F  Q  K  L  T  E  K  F  M  L  I  I  C  H  Y  R  P  C  S  Q  T  R  K  C  A  Y  F  Q  *  G  I  H  A  V  S  H  S  S  R  M  L  Y  L  R  N  L  R  C  W  C  R  K  H  W  R  R  L  A  L  I  R  *  P  A  K  I  S  K  N  L  I  D  H  L  W  G  R  L  G  W  Q  F  L  I  L  H  L  F  I  L  P  I  L  P  F  S  Y  Y  F  L  S  R  W  R  S  H  R  P  S  T  R  W  A  R  R  S  S  F  S  S  R  G  R  P  P  A  T  S  T  A  A  S  C  H  C  S   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02SLe0018B07.1" strand="-"/>
                <serials PGL_serial="2" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="9527" stop="9306"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>222</number_coding_nucleotides>
                  <number_encoded_amino_acids>74</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>PAKISKNLIDHLWGRLGWQFLILHLFILPILPFSYYFLSRWRSHRPSTRWARRSSFSSRGRPPATSTAASCHCS</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C02SLe0018B07.1" strand="-"/>
                <serials PGL_serial="2" AGS_serial="1" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="9502" stop="9305"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>198</number_coding_nucleotides>
                  <number_encoded_amino_acids>66</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>LIISGVGWGGNSSFCTCSFSPSSPSLTTSSVGGGVTALVPDGPGVRPFPLEDVLPRPLPRPLATAP</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="3" PGL_strand="+" PGL_start="9371" PGL_stop="9930"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="9371" e_stop="9930"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.925"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.925">
            <gDNA_exon_boundary e_start="9371" e_stop="9930" e_length="560"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="9371" stop="9930"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E329287" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="3" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>GCCTGGCCCATCTGGTACTAGGGCGGTGACTCCTCCACCGACTGAGGAAGTAGTAAGAGAAGGGGAGGATGGGGAGAATGAACAAGTGCAGAATGAGGAATTGCCACCCCAACCTACCCCAGAGATGATCAATCAGGTTCTTGCTTATCTTAGCGGGTTATCTGATCAAGGCCAAGCGCCTCCAGTGTTTTCTGCACCAGCACCTCAGGTTCCGGAGGTACAACATGCGGCTACTATGGCTCACCGCATGGATGCCTCATTGGAAATAGGCACATTTCCTCGTCTGACTACAGGGCCTATAATGACAAATGATCAGCATGAACTTTTCAGTAAGTTTTTGAAATTGAAACCTCCAGTCTTCGAGGGTGCTGAATCTAAGGATGCCTACGATTTTCTGGTTGACTGTCATAAGCTACTACACAAACACAAGATGAGTATAGTAGAACGGTTTGGTGTTAAATTTGTGACTTATCAGTTTCAAGGGAACGCCAAAATGTGGTGGCGGTCACATGTTGAGTGTCAACCAATAGAGGCACCACCTCTGACTTGGGCATCATTCT</gDNA_template>
            <first_frame> A  W  P  I  W  Y  *  G  G  D  S  S  T  D  *  G  S  S  K  R  R  G  G  W  G  E  *  T  S  A  E  *  G  I  A  T  P  T  Y  P  R  D  D  Q  S  G  S  C  L  S  *  R  V  I  *  S  R  P  S  A  S  S  V  F  C  T  S  T  S  G  S  G  G  T  T  C  G  Y  Y  G  S  P  H  G  C  L  I  G  N  R  H  I  S  S  S  D  Y  R  A  Y  N  D  K  *  S  A  *  T  F  Q  *  V  F  E  I  E  T  S  S  L  R  G  C  *  I  *  G  C  L  R  F  S  G  *  L  S  *  A  T  T  Q  T  Q  D  E  Y  S  R  T  V  W  C  *  I  C  D  L  S  V  S  R  E  R  Q  N  V  V  A  V  T  C  *  V  S  T  N  R  G  T  T  S  D  L  G  I  I   </first_frame>
            <second_frame>  P  G  P  S  G  T  R  A  V  T  P  P  P  T  E  E  V  V  R  E  G  E  D  G  E  N  E  Q  V  Q  N  E  E  L  P  P  Q  P  T  P  E  M  I  N  Q  V  L  A  Y  L  S  G  L  S  D  Q  G  Q  A  P  P  V  F  S  A  P  A  P  Q  V  P  E  V  Q  H  A  A  T  M  A  H  R  M  D  A  S  L  E  I  G  T  F  P  R  L  T  T  G  P  I  M  T  N  D  Q  H  E  L  F  S  K  F  L  K  L  K  P  P  V  F  E  G  A  E  S  K  D  A  Y  D  F  L  V  D  C  H  K  L  L  H  K  H  K  M  S  I  V  E  R  F  G  V  K  F  V  T  Y  Q  F  Q  G  N  A  K  M  W  W  R  S  H  V  E  C  Q  P  I  E  A  P  P  L  T  W  A  S  F  </second_frame>
            <third_frame>   L  A  H  L  V  L  G  R  *  L  L  H  R  L  R  K  *  *  E  K  G  R  M  G  R  M  N  K  C  R  M  R  N  C  H  P  N  L  P  Q  R  *  S  I  R  F  L  L  I  L  A  G  Y  L  I  K  A  K  R  L  Q  C  F  L  H  Q  H  L  R  F  R  R  Y  N  M  R  L  L  W  L  T  A  W  M  P  H  W  K  *  A  H  F  L  V  *  L  Q  G  L  *  *  Q  M  I  S  M  N  F  S  V  S  F  *  N  *  N  L  Q  S  S  R  V  L  N  L  R  M  P  T  I  F  W  L  T  V  I  S  Y  Y  T  N  T  R  *  V  *  *  N  G  L  V  L  N  L  *  L  I  S  F  K  G  T  P  K  C  G  G  G  H  M  L  S  V  N  Q  *  R  H  H  L  *  L  G  H  H  S </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02SLe0018B07.1" strand="+"/>
                <serials PGL_serial="3" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="9372" stop="9929"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>558</number_coding_nucleotides>
                  <number_encoded_amino_acids>186</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>PGPSGTRAVTPPPTEEVVREGEDGENEQVQNEELPPQPTPEMINQVLAYLSGLSDQGQAPPVFSAPAPQVPEVQHAATMAHRMDASLEIGTFPRLTTGPIMTNDQHELFSKFLKLKPPVFEGAESKDAYDFLVDCHKLLHKHKMSIVERFGVKFVTYQFQGNAKMWWRSHVECQPIEAPPLTWASF</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="4" PGL_strand="-" PGL_start="12008" PGL_stop="10263"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="12008" e_stop="10263"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.904"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.904">
            <gDNA_exon_boundary e_start="12008" e_stop="10263" e_length="1746"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="12008" stop="11484"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E204434" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="11937" stop="11269"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E368762" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="11937" stop="11579"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E240817" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="11430" stop="10670"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E355244" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="11430" stop="10771"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E351414" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="11027" stop="10698"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E352716" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="10821" stop="10263"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E244046" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="4" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>GAATCCCTTGACAAATCGACGGTAATAGCTAGCTAAACCAACAAAACTCCTTATTTCTGACACATTAGTAGGTCTTACCCAATTCTTCACTGTCTCAATCTTAGAAGGATCCACCATCACTCCATCCTTCGACACCACGTGCCCCAAGAAGGACACTGAATCTAGCCAAAACTCACACTTGGAGAATTTGGCATAAAGCTTTTTCTCCCTCAACATTTCCAATACCATTCTCAAATGCTCCTCATGTTCTTTCTTGCTCTTTGAGTATATCAGTATATCATCAATAAATACGATCACAAAGAGATCCAAATATGGCTTAAAAATCCCGTTCATCAAGTTCATGAAAGCAGCAGGGGCATTCGTAAGACCAAAAGACATCACTACAAATTTGTAATGCCCGTACCTGGTCCGAAAAGCAGTCTTTGGCACATCCGTTGCCCGTATATTCAATTGATGATAACCGGATCTCAAGTCAATCTTAGAGAAGACACAAGCACCTTGTAACTGATCGAACAAGTCATCAATGCGAGGAATGAGATACTTGTTCTTAATAGTTCTGTCTGTAGTCTATGCACATCCGGAAACTCCCATCCTTTTTCTTCACAAATAACATAGGAGCACCCCAAGGAGATGCACTTGGTCTAATAAAGCCTTTGCTTAGCAACTCTTGAAGTTGTGCCTTTAACTCTCTTAACTCCGCGGGAGCCATTCTATAAGGGGGTATAGAAATGGAGCGAGTATCCGGTTCAAGATCGATGCAGAAGTCAATATCTCTATCCGGTGGCATACCAGGAAGGTCTGCAGGAAACACATCTAAAAATTTGCGGACTATCGAAACCGACTCAATTGAAGGTACTTGAGTAGTGTCATCCCTGAGATGTGCTAAGAAAGTTAGACAACCCTTACTAACCATTTTCTTAGCACGAAGAAAGGAGACGATACGAATCGGATTGGAAGTGTAGTCGCCCTCCCACACTAACGGATCTGTCCCAGGCTTGGCTAACGTCACAGTTTTAGTATTACAGTCCAAGATCGCAAAATTCGGAGAAAGCCAAATCATACCCAGAATTACATCAAAGTCAACCATTTCTAAGATAACCAAATCTACATAAGTGTTGCTCCCCACAAAGTCACCAAACAAGACCTATATACTTTTTCAACTATCACAGACTCACCCACCGGAGTAGAAACACGAATAGACATGTCAAGTATTTCACAAGGTAAATTAAGACCAGTAGCAAATGAAGAATATACATAAGAAAATGTGGATCCAGGATCAAACAATACAGAAGCCATGCAATCACAAACCAAAAGATTACCTGTGATGACAGCATCAGATGTCTCCACTTCAGATCTCCCAGGGAAAGCATAACAATGGGCCCTCTCACCTGTCTGTCCGTTGACCCTACCATGTTGTGATGTAGTGGCTCCAGTTTTCCCATCACCCCGGCCGTTTTGGTGACCACCATTACCTCGACCACCGCTTCCTCCAGAATGACGGCCTCTTCCATAACCACTTCTACCTCTAACATTTGGAGGTCTGTAACTCTGTTTTGGACAATACCTCTTAATGTGTCCAGTCTTCCCACATCCATAACACTCTCCGGATTCAAGCATAGGTCTCTCAGAGAAGTGTTGACCGGTCTGAGGTGGACCCCCAACTACAGTCTGTAGTGAAGACTGAATTGGTCGAACTGAGTAACCTCCTGAACCCTGTCCTCTAGAGTAAGAACCATTAAACTCACC</gDNA_template>
            <first_frame> E  S  L  D  K  S  T  V  I  A  S  *  T  N  K  T  P  Y  F  *  H  I  S  R  S  Y  P  I  L  H  C  L  N  L  R  R  I  H  H  H  S  I  L  R  H  H  V  P  Q  E  G  H  *  I  *  P  K  L  T  L  G  E  F  G  I  K  L  F  L  P  Q  H  F  Q  Y  H  S  Q  M  L  L  M  F  F  L  A  L  *  V  Y  Q  Y  I  I  N  K  Y  D  H  K  E  I  Q  I  W  L  K  N  P  V  H  Q  V  H  E  S  S  R  G  I  R  K  T  K  R  H  H  Y  K  F  V  M  P  V  P  G  P  K  S  S  L  W  H  I  R  C  P  Y  I  Q  L  M  I  T  G  S  Q  V  N  L  R  E  D  T  S  T  L  *  L  I  E  Q  V  I  N  A  R  N  E  I  L  V  L  N  S  S  V  C  S  L  C  T  S  G  N  S  H  P  F  S  S  Q  I  T  *  E  H  P  K  E  M  H  L  V  *  *  S  L  C  L  A  T  L  E  V  V  P  L  T  L  L  T  P  R  E  P  F  Y  K  G  V  *  K  W  S  E  Y  P  V  Q  D  R  C  R  S  Q  Y  L  Y  P  V  A  Y  Q  E  G  L  Q  E  T  H  L  K  I  C  G  L  S  K  P  T  Q  L  K  V  L  E  *  C  H  P  *  D  V  L  R  K  L  D  N  P  Y  *  P  F  S  *  H  E  E  R  R  R  Y  E  S  D  W  K  C  S  R  P  P  T  L  T  D  L  S  Q  A  W  L  T  S  Q  F  *  Y  Y  S  P  R  S  Q  N  S  E  K  A  K  S  Y  P  E  L  H  Q  S  Q  P  F  L  R  *  P  N  L  H  K  C  C  S  P  Q  S  H  Q  T  R  P  I  Y  F  F  N  Y  H  R  L  T  H  R  S  R  N  T  N  R  H  V  K  Y  F  T  R  *  I  K  T  S  S  K  *  R  I  Y  I  R  K  C  G  S  R  I  K  Q  Y  R  S  H  A  I  T  N  Q  K  I  T  C  D  D  S  I  R  C  L  H  F  R  S  P  R  E  S  I  T  M  G  P  L  T  C  L  S  V  D  P  T  M  L  *  C  S  G  S  S  F  P  I  T  P  A  V  L  V  T  T  I  T  S  T  T  A  S  S  R  M  T  A  S  S  I  T  T  S  T  S  N  I  W  R  S  V  T  L  F  W  T  I  P  L  N  V  S  S  L  P  T  S  I  T  L  S  G  F  K  H  R  S  L  R  E  V  L  T  G  L  R  W  T  P  N  Y  S  L  *  *  R  L  N  W  S  N  *  V  T  S  *  T  L  S  S  R  V  R  T  I  K  L  T </first_frame>
            <second_frame>  N  P  L  T  N  R  R  *  *  L  A  K  P  T  K  L  L  I  S  D  T  L  V  G  L  T  Q  F  F  T  V  S  I  L  E  G  S  T  I  T  P  S  F  D  T  T  C  P  K  K  D  T  E  S  S  Q  N  S  H  L  E  N  L  A  *  S  F  F  S  L  N  I  S  N  T  I  L  K  C  S  S  C  S  F  L  L  F  E  Y  I  S  I  S  S  I  N  T  I  T  K  R  S  K  Y  G  L  K  I  P  F  I  K  F  M  K  A  A  G  A  F  V  R  P  K  D  I  T  T  N  L  *  C  P  Y  L  V  R  K  A  V  F  G  T  S  V  A  R  I  F  N  *  *  *  P  D  L  K  S  I  L  E  K  T  Q  A  P  C  N  *  S  N  K  S  S  M  R  G  M  R  Y  L  F  L  I  V  L  S  V  V  Y  A  H  P  E  T  P  I  L  F  L  H  K  *  H  R  S  T  P  R  R  C  T  W  S  N  K  A  F  A  *  Q  L  L  K  L  C  L  *  L  S  *  L  R  G  S  H  S  I  R  G  Y  R  N  G  A  S  I  R  F  K  I  D  A  E  V  N  I  S  I  R  W  H  T  R  K  V  C  R  K  H  I  *  K  F  A  D  Y  R  N  R  L  N  *  R  Y  L  S  S  V  I  P  E  M  C  *  E  S  *  T  T  L  T  N  H  F  L  S  T  K  K  G  D  D  T  N  R  I  G  S  V  V  A  L  P  H  *  R  I  C  P  R  L  G  *  R  H  S  F  S  I  T  V  Q  D  R  K  I  R  R  K  P  N  H  T  Q  N  Y  I  K  V  N  H  F  *  D  N  Q  I  Y  I  S  V  A  P  H  K  V  T  K  Q  D  L  Y  T  F  S  T  I  T  D  S  P  T  G  V  E  T  R  I  D  M  S  S  I  S  Q  G  K  L  R  P  V  A  N  E  E  Y  T  *  E  N  V  D  P  G  S  N  N  T  E  A  M  Q  S  Q  T  K  R  L  P  V  M  T  A  S  D  V  S  T  S  D  L  P  G  K  A  *  Q  W  A  L  S  P  V  C  P  L  T  L  P  C  C  D  V  V  A  P  V  F  P  S  P  R  P  F  W  *  P  P  L  P  R  P  P  L  P  P  E  *  R  P  L  P  *  P  L  L  P  L  T  F  G  G  L  *  L  C  F  G  Q  Y  L  L  M  C  P  V  F  P  H  P  *  H  S  P  D  S  S  I  G  L  S  E  K  C  *  P  V  *  G  G  P  P  T  T  V  C  S  E  D  *  I  G  R  T  E  *  P  P  E  P  C  P  L  E  *  E  P  L  N  S   </second_frame>
            <third_frame>   I  P  *  Q  I  D  G  N  S  *  L  N  Q  Q  N  S  L  F  L  T  H  *  *  V  L  P  N  S  S  L  S  Q  S  *  K  D  P  P  S  L  H  P  S  T  P  R  A  P  R  R  T  L  N  L  A  K  T  H  T  W  R  I  W  H  K  A  F  S  P  S  T  F  P  I  P  F  S  N  A  P  H  V  L  S  C  S  L  S  I  S  V  Y  H  Q  *  I  R  S  Q  R  D  P  N  M  A  *  K  S  R  S  S  S  S  *  K  Q  Q  G  H  S  *  D  Q  K  T  S  L  Q  I  C  N  A  R  T  W  S  E  K  Q  S  L  A  H  P  L  P  V  Y  S  I  D  D  N  R  I  S  S  Q  S  *  R  R  H  K  H  L  V  T  D  R  T  S  H  Q  C  E  E  *  D  T  C  S  *  *  F  C  L  *  S  M  H  I  R  K  L  P  S  F  F  F  T  N  N  I  G  A  P  Q  G  D  A  L  G  L  I  K  P  L  L  S  N  S  *  S  C  A  F  N  S  L  N  S  A  G  A  I  L  *  G  G  I  E  M  E  R  V  S  G  S  R  S  M  Q  K  S  I  S  L  S  G  G  I  P  G  R  S  A  G  N  T  S  K  N  L  R  T  I  E  T  D  S  I  E  G  T  *  V  V  S  S  L  R  C  A  K  K  V  R  Q  P  L  L  T  I  F  L  A  R  R  K  E  T  I  R  I  G  L  E  V  *  S  P  S  H  T  N  G  S  V  P  G  L  A  N  V  T  V  L  V  L  Q  S  K  I  A  K  F  G  E  S  Q  I  I  P  R  I  T  S  K  S  T  I  S  K  I  T  K  S  T  *  V  L  L  P  T  K  S  P  N  K  T  Y  I  L  F  Q  L  S  Q  T  H  P  P  E  *  K  H  E  *  T  C  Q  V  F  H  K  V  N  *  D  Q  *  Q  M  K  N  I  H  K  K  M  W  I  Q  D  Q  T  I  Q  K  P  C  N  H  K  P  K  D  Y  L  *  *  Q  H  Q  M  S  P  L  Q  I  S  Q  G  K  H  N  N  G  P  S  H  L  S  V  R  *  P  Y  H  V  V  M  *  W  L  Q  F  S  H  H  P  G  R  F  G  D  H  H  Y  L  D  H  R  F  L  Q  N  D  G  L  F  H  N  H  F  Y  L  *  H  L  E  V  C  N  S  V  L  D  N  T  S  *  C  V  Q  S  S  H  I  H  N  T  L  R  I  Q  A  *  V  S  Q  R  S  V  D  R  S  E  V  D  P  Q  L  Q  S  V  V  K  T  E  L  V  E  L  S  N  L  L  N  P  V  L  *  S  K  N  H  *  T  H  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02SLe0018B07.1" strand="-"/>
                <serials PGL_serial="4" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="10589" stop="10335"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>252</number_coding_nucleotides>
                  <number_encoded_amino_acids>84</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>CSGSSFPITPAVLVTTITSTTASSRMTASSITTSTSNIWRSVTLFWTIPLNVSSLPTSITLSGFKHRSLREVLTGLRWTPNYSL*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C02SLe0018B07.1" strand="-"/>
                <serials PGL_serial="4" AGS_serial="1" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="11744" stop="11505"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>237</number_coding_nucleotides>
                  <number_encoded_amino_acids>79</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>VYQYIINKYDHKEIQIWLKNPVHQVHESSRGIRKTKRHHYKFVMPVPGPKSSLWHIRCPYIQLMITGSQVNLREDTSTL*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C02SLe0018B07.1" strand="-"/>
                <serials PGL_serial="4" AGS_serial="1" PPS_serial="3"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="11812" stop="11615"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>195</number_coding_nucleotides>
                  <number_encoded_amino_acids>65</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>SFFSLNISNTILKCSSCSFLLFEYISISSINTITKRSKYGLKIPFIKFMKAAGAFVRPKDITTNL*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="5" PGL_strand="-" PGL_start="13490" PGL_stop="13314"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="13490" e_stop="13314"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.932"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.932">
            <gDNA_exon_boundary e_start="13490" e_stop="13314" e_length="177"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="13490" stop="13314"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E577888" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="5" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>CTAAATCTCCTCCCATACAATGCTTCGAATGGAGCCATATCAATACTTGAGTGATAGCTATTATTGTATGAAAACTCCGCTAAGGGTAAGAAGCTATCCCAATGGCCACCAAACTCTATCACGCATGCATGAAGCATATCCTCCAACACTTGAATCGTTCTCTCAGACTGACCATCG</gDNA_template>
            <first_frame> L  N  L  L  P  Y  N  A  S  N  G  A  I  S  I  L  E  *  *  L  L  L  Y  E  N  S  A  K  G  K  K  L  S  Q  W  P  P  N  S  I  T  H  A  *  S  I  S  S  N  T  *  I  V  L  S  D  *  P  S </first_frame>
            <second_frame>  *  I  S  S  H  T  M  L  R  M  E  P  Y  Q  Y  L  S  D  S  Y  Y  C  M  K  T  P  L  R  V  R  S  Y  P  N  G  H  Q  T  L  S  R  M  H  E  A  Y  P  P  T  L  E  S  F  S  Q  T  D  H   </second_frame>
            <third_frame>   K  S  P  P  I  Q  C  F  E  W  S  H  I  N  T  *  V  I  A  I  I  V  *  K  L  R  *  G  *  E  A  I  P  M  A  T  K  L  Y  H  A  C  M  K  H  I  L  Q  H  L  N  R  S  L  R  L  T  I  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <none gDNA_id="C02SLe0018B07.1"/>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="6" PGL_strand="+" PGL_start="14950" PGL_stop="15541"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="14950" e_stop="15023"/>
            <exon e_start="15099" e_stop="15541"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.000" acc_prob="0.000" e_score="0.946"/>
          <exon-only e_score="0.894"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.946">
            <gDNA_exon_boundary e_start="14950" e_stop="15023" e_length="74"/>
          </exon>
          <intron i_serial="1" don_prob="0.000" acc_prob="0.000">
            <gDNA_intron_boundary i_start="15024" i_stop="15098" i_length="75"/>
          </intron>
          <exon e_serial="2" e_score="0.894">
            <gDNA_exon_boundary e_start="15099" e_stop="15541" e_length="443"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="14950" stop="15023"/>
              <exon start="15099" stop="15541"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E242359" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="6" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>CCTAATCTACTTTGTTAATGATGATGCCTTAGTGTAAAAGAAGGCTTGATGAACGAAAGTAGTGAGATTAGGGG : ATCGGGTGCCACGTTCCGGTACCAGGATAGAATGAGGATCGGAGTGTCACGTTCCGACACCAGGATAGTATATGGATCGGGTGCCACGTTCCGGTACCAGGATAGAATAAGGATCGGAGTGTCACGTTCCGACACCAGGATAGTATATGGATCGGGTGCCACGTTTCGGTACCAAGATAGAATGAGGATCGGAGTGTCACGTTCCGACACCAGGATAGTATATGAGGGGCGGAGTGTCACGTACCGACACGAGAGGAATAAAGATAATGAATCTTGAAAGATGTTAATATACTCAATCTAATGAACCTAATTCCCAAACGAGTATGATGAGGAGGCGTGAGTCCTCATTGATGTGCTTGGTGTTGTAACCAAGGGTTATGGTAATTGTAAATGCTGCATGCTAAGGATATTAGTTGATTTTATGATGTTACCTGATATATACT</gDNA_template>
            <first_frame> P  N  L  L  C  *  *  *  C  L  S  V  K  E  G  L  M  N  E  S  S  E  I  R  G :   S  G  A  T  F  R  Y  Q  D  R  M  R  I  G  V  S  R  S  D  T  R  I  V  Y  G  S  G  A  T  F  R  Y  Q  D  R  I  R  I  G  V  S  R  S  D  T  R  I  V  Y  G  S  G  A  T  F  R  Y  Q  D  R  M  R  I  G  V  S  R  S  D  T  R  I  V  Y  E  G  R  S  V  T  Y  R  H  E  R  N  K  D  N  E  S  *  K  M  L  I  Y  S  I  *  *  T  *  F  P  N  E  Y  D  E  E  A  *  V  L  I  D  V  L  G  V  V  T  K  G  Y  G  N  C  K  C  C  M  L  R  I  L  V  D  F  M  M  L  P  D  I  Y  </first_frame>
            <second_frame>  L  I  Y  F  V  N  D  D  A  L  V  *  K  K  A  *  *  T  K  V  V  R  L  G   : D  R  V  P  R  S  G  T  R  I  E  *  G  S  E  C  H  V  P  T  P  G  *  Y  M  D  R  V  P  R  S  G  T  R  I  E  *  G  S  E  C  H  V  P  T  P  G  *  Y  M  D  R  V  P  R  F  G  T  K  I  E  *  G  S  E  C  H  V  P  T  P  G  *  Y  M  R  G  G  V  S  R  T  D  T  R  G  I  K  I  M  N  L  E  R  C  *  Y  T  Q  S  N  E  P  N  S  Q  T  S  M  M  R  R  R  E  S  S  L  M  C  L  V  L  *  P  R  V  M  V  I  V  N  A  A  C  *  G  Y  *  L  I  L  *  C  Y  L  I  Y  T </second_frame>
            <third_frame>   *  S  T  L  L  M  M  M  P  *  C  K  R  R  L  D  E  R  K  *  *  D  *  G  :  I  G  C  H  V  P  V  P  G  *  N  E  D  R  S  V  T  F  R  H  Q  D  S  I  W  I  G  C  H  V  P  V  P  G  *  N  K  D  R  S  V  T  F  R  H  Q  D  S  I  W  I  G  C  H  V  S  V  P  R  *  N  E  D  R  S  V  T  F  R  H  Q  D  S  I  *  G  A  E  C  H  V  P  T  R  E  E  *  R  *  *  I  L  K  D  V  N  I  L  N  L  M  N  L  I  P  K  R  V  *  *  G  G  V  S  P  H  *  C  A  W  C  C  N  Q  G  L  W  *  L  *  M  L  H  A  K  D  I  S  *  F  Y  D  V  T  *  Y  I   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02SLe0018B07.1" strand="+"/>
                <serials PGL_serial="6" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="14974" stop="15023"/>
                    <exon start="15099" stop="15375"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>324</number_coding_nucleotides>
                  <number_encoded_amino_acids>108</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>CLSVKEGLMNESSEIRGSGATFRYQDRMRIGVSRSDTRIVYGSGATFRYQDRIRIGVSRSDTRIVYGSGATFRYQDRMRIGVSRSDTRIVYEGRSVTYRHERNKDNES*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="7" PGL_strand="-" PGL_start="36159" PGL_stop="35399"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="36159" e_stop="35399"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.904"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.904">
            <gDNA_exon_boundary e_start="36159" e_stop="35399" e_length="761"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="36159" stop="35399"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E355244" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="7" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>CGGAAACTCCCATCCTTTTTCTTCACAAATAACATAGGAGCACCCCAAGGAGATGCACTTGGTCTAATAAAGCCTTTGCTTAGCAACTCTTGAAGTTGTGCCTTTAACTCTCTTAACTCCGCGGGAGCCATTCTATAAGGGGGTATAGAAATGGAGCGAGTATCCGGTTCAAGATCGATGCAGAAGTCAATATCTCTATCCGGTGGCATACCAGGAAGGTCTGCAGGAAACACATCTAAAAATTTGCGGACTATCGAAACCGACTCAATTGAAGGTACTTGAGTAGTGTCATCCCTGAGATGTGCTAAGAAAGTTAGACAACCCTTACTAACCATTTTCTTAGCACGAAGAAAGGAGACGATACGAATCGGATTAGAAGTGTAGTCGCCCTCCCACACTAACGGATCTGTCCCAGGCTTGGCTAACGTCACAGTTTTAGTATTACAGTCCAAGATCGCAAAATTCGGAGAAAGCCAAATCATACCCAGAATTACATCAAAGTCAACCATTTCTAAGATAACCAAATCTACATAAGTGTTGCTCCCCACAAAGTCACCAAACAAGACCTATATACTTTTTCAACTATCACAGACTCACCCACCGGAGTAGAAACATGAATAGGCATGTCAAGTATTTCACAAGGTAAATTAAGACCAGTAGCAAATGAAGAATATACATAAGAAAATGTGGATCCAGGATCAAACAATACAGAAGCCATGCAATCACAAACCGAAAGATTACCTGTGATGACAGCATCATAT</gDNA_template>
            <first_frame> R  K  L  P  S  F  F  F  T  N  N  I  G  A  P  Q  G  D  A  L  G  L  I  K  P  L  L  S  N  S  *  S  C  A  F  N  S  L  N  S  A  G  A  I  L  *  G  G  I  E  M  E  R  V  S  G  S  R  S  M  Q  K  S  I  S  L  S  G  G  I  P  G  R  S  A  G  N  T  S  K  N  L  R  T  I  E  T  D  S  I  E  G  T  *  V  V  S  S  L  R  C  A  K  K  V  R  Q  P  L  L  T  I  F  L  A  R  R  K  E  T  I  R  I  G  L  E  V  *  S  P  S  H  T  N  G  S  V  P  G  L  A  N  V  T  V  L  V  L  Q  S  K  I  A  K  F  G  E  S  Q  I  I  P  R  I  T  S  K  S  T  I  S  K  I  T  K  S  T  *  V  L  L  P  T  K  S  P  N  K  T  Y  I  L  F  Q  L  S  Q  T  H  P  P  E  *  K  H  E  *  A  C  Q  V  F  H  K  V  N  *  D  Q  *  Q  M  K  N  I  H  K  K  M  W  I  Q  D  Q  T  I  Q  K  P  C  N  H  K  P  K  D  Y  L  *  *  Q  H  H   </first_frame>
            <second_frame>  G  N  S  H  P  F  S  S  Q  I  T  *  E  H  P  K  E  M  H  L  V  *  *  S  L  C  L  A  T  L  E  V  V  P  L  T  L  L  T  P  R  E  P  F  Y  K  G  V  *  K  W  S  E  Y  P  V  Q  D  R  C  R  S  Q  Y  L  Y  P  V  A  Y  Q  E  G  L  Q  E  T  H  L  K  I  C  G  L  S  K  P  T  Q  L  K  V  L  E  *  C  H  P  *  D  V  L  R  K  L  D  N  P  Y  *  P  F  S  *  H  E  E  R  R  R  Y  E  S  D  *  K  C  S  R  P  P  T  L  T  D  L  S  Q  A  W  L  T  S  Q  F  *  Y  Y  S  P  R  S  Q  N  S  E  K  A  K  S  Y  P  E  L  H  Q  S  Q  P  F  L  R  *  P  N  L  H  K  C  C  S  P  Q  S  H  Q  T  R  P  I  Y  F  F  N  Y  H  R  L  T  H  R  S  R  N  M  N  R  H  V  K  Y  F  T  R  *  I  K  T  S  S  K  *  R  I  Y  I  R  K  C  G  S  R  I  K  Q  Y  R  S  H  A  I  T  N  R  K  I  T  C  D  D  S  I  I  </second_frame>
            <third_frame>   E  T  P  I  L  F  L  H  K  *  H  R  S  T  P  R  R  C  T  W  S  N  K  A  F  A  *  Q  L  L  K  L  C  L  *  L  S  *  L  R  G  S  H  S  I  R  G  Y  R  N  G  A  S  I  R  F  K  I  D  A  E  V  N  I  S  I  R  W  H  T  R  K  V  C  R  K  H  I  *  K  F  A  D  Y  R  N  R  L  N  *  R  Y  L  S  S  V  I  P  E  M  C  *  E  S  *  T  T  L  T  N  H  F  L  S  T  K  K  G  D  D  T  N  R  I  R  S  V  V  A  L  P  H  *  R  I  C  P  R  L  G  *  R  H  S  F  S  I  T  V  Q  D  R  K  I  R  R  K  P  N  H  T  Q  N  Y  I  K  V  N  H  F  *  D  N  Q  I  Y  I  S  V  A  P  H  K  V  T  K  Q  D  L  Y  T  F  S  T  I  T  D  S  P  T  G  V  E  T  *  I  G  M  S  S  I  S  Q  G  K  L  R  P  V  A  N  E  E  Y  T  *  E  N  V  D  P  G  S  N  N  T  E  A  M  Q  S  Q  T  E  R  L  P  V  M  T  A  S  Y </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <none gDNA_id="C02SLe0018B07.1"/>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="8" PGL_strand="-" PGL_start="36737" PGL_stop="36213"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="36737" e_stop="36213"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.939"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.939">
            <gDNA_exon_boundary e_start="36737" e_stop="36213" e_length="525"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="36737" stop="36213"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E204434" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="36666" stop="36308"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E240817" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="8" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>GAATCCCTTGACAAATCGACGGTAATAGCTAGCTAAACCAACAAAACTCCTTATTTCTGACACATTAGTAGGTCTTACCCAATTCTTCACTGTCTCAATCTTAGAAGGATCCACCATCACTCCATCCTTCGACACCACGTGCCCCAAGAAGGACACTGAATCTAGCCAAAACTCACACTTGGAGAATTTGGCATAAAGCTTTTTCTCCCTCAACATTTCCAATACCATTCTCAAATGCTCCTCATGTTCTTTCTTGCTCTTTGAGTATATCAGTATATCATCAATAAATACGATCACAAAGAGATCCAAATATGGCTTAAAAATCCCGTTCATCAAGTTCATGAAAGCAGCAGGGGCATTCGTAAGACCAAAAGACATCACTACAAATTTGTAATGCCCGTACCTGGTCCGAAAAGCAGTCTTTGGCACATCCGTTGCCCGTATATTCAATTGATGATAACCGGATCTCAAGTCAATCTTAGAGAAGACACAAGCACCTTGTAACTGATCGAACAAGTCATCAAT</gDNA_template>
            <first_frame> E  S  L  D  K  S  T  V  I  A  S  *  T  N  K  T  P  Y  F  *  H  I  S  R  S  Y  P  I  L  H  C  L  N  L  R  R  I  H  H  H  S  I  L  R  H  H  V  P  Q  E  G  H  *  I  *  P  K  L  T  L  G  E  F  G  I  K  L  F  L  P  Q  H  F  Q  Y  H  S  Q  M  L  L  M  F  F  L  A  L  *  V  Y  Q  Y  I  I  N  K  Y  D  H  K  E  I  Q  I  W  L  K  N  P  V  H  Q  V  H  E  S  S  R  G  I  R  K  T  K  R  H  H  Y  K  F  V  M  P  V  P  G  P  K  S  S  L  W  H  I  R  C  P  Y  I  Q  L  M  I  T  G  S  Q  V  N  L  R  E  D  T  S  T  L  *  L  I  E  Q  V  I  N </first_frame>
            <second_frame>  N  P  L  T  N  R  R  *  *  L  A  K  P  T  K  L  L  I  S  D  T  L  V  G  L  T  Q  F  F  T  V  S  I  L  E  G  S  T  I  T  P  S  F  D  T  T  C  P  K  K  D  T  E  S  S  Q  N  S  H  L  E  N  L  A  *  S  F  F  S  L  N  I  S  N  T  I  L  K  C  S  S  C  S  F  L  L  F  E  Y  I  S  I  S  S  I  N  T  I  T  K  R  S  K  Y  G  L  K  I  P  F  I  K  F  M  K  A  A  G  A  F  V  R  P  K  D  I  T  T  N  L  *  C  P  Y  L  V  R  K  A  V  F  G  T  S  V  A  R  I  F  N  *  *  *  P  D  L  K  S  I  L  E  K  T  Q  A  P  C  N  *  S  N  K  S  S   </second_frame>
            <third_frame>   I  P  *  Q  I  D  G  N  S  *  L  N  Q  Q  N  S  L  F  L  T  H  *  *  V  L  P  N  S  S  L  S  Q  S  *  K  D  P  P  S  L  H  P  S  T  P  R  A  P  R  R  T  L  N  L  A  K  T  H  T  W  R  I  W  H  K  A  F  S  P  S  T  F  P  I  P  F  S  N  A  P  H  V  L  S  C  S  L  S  I  S  V  Y  H  Q  *  I  R  S  Q  R  D  P  N  M  A  *  K  S  R  S  S  S  S  *  K  Q  Q  G  H  S  *  D  Q  K  T  S  L  Q  I  C  N  A  R  T  W  S  E  K  Q  S  L  A  H  P  L  P  V  Y  S  I  D  D  N  R  I  S  S  Q  S  *  R  R  H  K  H  L  V  T  D  R  T  S  H  Q  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02SLe0018B07.1" strand="-"/>
                <serials PGL_serial="8" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="36473" stop="36234"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>237</number_coding_nucleotides>
                  <number_encoded_amino_acids>79</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>VYQYIINKYDHKEIQIWLKNPVHQVHESSRGIRKTKRHHYKFVMPVPGPKSSLWHIRCPYIQLMITGSQVNLREDTSTL*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C02SLe0018B07.1" strand="-"/>
                <serials PGL_serial="8" AGS_serial="1" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="36541" stop="36344"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>195</number_coding_nucleotides>
                  <number_encoded_amino_acids>65</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>SFFSLNISNTILKCSSCSFLLFEYISISSINTITKRSKYGLKIPFIKFMKAAGAFVRPKDITTNL*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="9" PGL_strand="-" PGL_start="38219" PGL_stop="38043"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="38219" e_stop="38043"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.932"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.932">
            <gDNA_exon_boundary e_start="38219" e_stop="38043" e_length="177"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="38219" stop="38043"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E577888" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="9" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>CTAAATCTCCTCCCATACAATGCTTCGAATGGAGCCATATCAATACTTGAGTGATAGCTATTATTGTATGAAAACTCCGCTAAGGGTAAGAAGCTATCCCAATGGCCACCAAACTCTATCACGCATGCATGAAGCATATCCTCCAACACTTGAATCGTTCTCTCAGACTGACCATCG</gDNA_template>
            <first_frame> L  N  L  L  P  Y  N  A  S  N  G  A  I  S  I  L  E  *  *  L  L  L  Y  E  N  S  A  K  G  K  K  L  S  Q  W  P  P  N  S  I  T  H  A  *  S  I  S  S  N  T  *  I  V  L  S  D  *  P  S </first_frame>
            <second_frame>  *  I  S  S  H  T  M  L  R  M  E  P  Y  Q  Y  L  S  D  S  Y  Y  C  M  K  T  P  L  R  V  R  S  Y  P  N  G  H  Q  T  L  S  R  M  H  E  A  Y  P  P  T  L  E  S  F  S  Q  T  D  H   </second_frame>
            <third_frame>   K  S  P  P  I  Q  C  F  E  W  S  H  I  N  T  *  V  I  A  I  I  V  *  K  L  R  *  G  *  E  A  I  P  M  A  T  K  L  Y  H  A  C  M  K  H  I  L  Q  H  L  N  R  S  L  R  L  T  I  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <none gDNA_id="C02SLe0018B07.1"/>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="10" PGL_strand="+" PGL_start="60448" PGL_stop="64994"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="60448" e_stop="60580"/>
            <exon e_start="62130" e_stop="62199"/>
            <exon e_start="62787" e_stop="62879"/>
            <exon e_start="63061" e_stop="63257"/>
            <exon e_start="63364" e_stop="63469"/>
            <exon e_start="64019" e_stop="64165"/>
            <exon e_start="64570" e_stop="64994"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.859" acc_prob="0.702" e_score="0.991"/>
          <exon-intron don_prob="1.000" acc_prob="0.979" e_score="1.000"/>
          <exon-intron don_prob="0.999" acc_prob="0.882" e_score="1.000"/>
          <exon-intron don_prob="0.781" acc_prob="0.994" e_score="1.000"/>
          <exon-intron don_prob="0.997" acc_prob="0.992" e_score="1.000"/>
          <exon-intron don_prob="0.991" acc_prob="0.619" e_score="1.000"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.991">
            <gDNA_exon_boundary e_start="60448" e_stop="60580" e_length="133"/>
          </exon>
          <intron i_serial="1" don_prob="0.859" acc_prob="0.702">
            <gDNA_intron_boundary i_start="60581" i_stop="62129" i_length="1549"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="62130" e_stop="62199" e_length="70"/>
          </exon>
          <intron i_serial="2" don_prob="1.000" acc_prob="0.979">
            <gDNA_intron_boundary i_start="62200" i_stop="62786" i_length="587"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="62787" e_stop="62879" e_length="93"/>
          </exon>
          <intron i_serial="3" don_prob="0.999" acc_prob="0.882">
            <gDNA_intron_boundary i_start="62880" i_stop="63060" i_length="181"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="63061" e_stop="63257" e_length="197"/>
          </exon>
          <intron i_serial="4" don_prob="0.781" acc_prob="0.994">
            <gDNA_intron_boundary i_start="63258" i_stop="63363" i_length="106"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="63364" e_stop="63469" e_length="106"/>
          </exon>
          <intron i_serial="5" don_prob="0.997" acc_prob="0.992">
            <gDNA_intron_boundary i_start="63470" i_stop="64018" i_length="549"/>
          </intron>
          <exon e_serial="6" e_score="1.000">
            <gDNA_exon_boundary e_start="64019" e_stop="64165" e_length="147"/>
          </exon>
          <intron i_serial="6" don_prob="0.991" acc_prob="0.619">
            <gDNA_intron_boundary i_start="64166" i_stop="64569" i_length="404"/>
          </intron>
          <exon e_serial="7" e_score="1.000">
            <gDNA_exon_boundary e_start="64570" e_stop="64994" e_length="425"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="60448" stop="60580"/>
              <exon start="62130" stop="62199"/>
              <exon start="62787" stop="62879"/>
              <exon start="63061" stop="63257"/>
              <exon start="63364" stop="63417"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E365340" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="60458" stop="60580"/>
              <exon start="62130" stop="62199"/>
              <exon start="62787" stop="62879"/>
              <exon start="63061" stop="63137"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E279374" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="60468" stop="60580"/>
              <exon start="62130" stop="62199"/>
              <exon start="62787" stop="62879"/>
              <exon start="63061" stop="63257"/>
              <exon start="63364" stop="63424"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E285048" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="60489" stop="60580"/>
              <exon start="62130" stop="62199"/>
              <exon start="62787" stop="62879"/>
              <exon start="63061" stop="63257"/>
              <exon start="63364" stop="63469"/>
              <exon start="64019" stop="64165"/>
              <exon start="64570" stop="64663"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E709423" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="60489" stop="60580"/>
              <exon start="62130" stop="62199"/>
              <exon start="62787" stop="62879"/>
              <exon start="63061" stop="63257"/>
              <exon start="63364" stop="63469"/>
              <exon start="64019" stop="64165"/>
              <exon start="64570" stop="64588"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E342918" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="60490" stop="60580"/>
              <exon start="62130" stop="62199"/>
              <exon start="62787" stop="62879"/>
              <exon start="63061" stop="63257"/>
              <exon start="63364" stop="63469"/>
              <exon start="64019" stop="64165"/>
              <exon start="64570" stop="64594"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E710371" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="60495" stop="60580"/>
              <exon start="62130" stop="62199"/>
              <exon start="62787" stop="62879"/>
              <exon start="63061" stop="63257"/>
              <exon start="63364" stop="63408"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E277558" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="60501" stop="60580"/>
              <exon start="62130" stop="62199"/>
              <exon start="62787" stop="62879"/>
              <exon start="63061" stop="63257"/>
              <exon start="63364" stop="63424"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E267028" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="60509" stop="60580"/>
              <exon start="62130" stop="62199"/>
              <exon start="62787" stop="62879"/>
              <exon start="63061" stop="63257"/>
              <exon start="63364" stop="63469"/>
              <exon start="64019" stop="64057"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E319937" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="62802" stop="62879"/>
              <exon start="63061" stop="63257"/>
              <exon start="63364" stop="63425"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E240677" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="62811" stop="62879"/>
              <exon start="63061" stop="63257"/>
              <exon start="63364" stop="63469"/>
              <exon start="64019" stop="64165"/>
              <exon start="64570" stop="64941"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E703908" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="63412" stop="63469"/>
              <exon start="64019" stop="64165"/>
              <exon start="64570" stop="64994"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E355531" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="63412" stop="63469"/>
              <exon start="64019" stop="64165"/>
              <exon start="64570" stop="64990"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E349897" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="63412" stop="63469"/>
              <exon start="64019" stop="64165"/>
              <exon start="64570" stop="64990"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E353134" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="64137" stop="64165"/>
              <exon start="64570" stop="64912"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E278073" strand="-"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="10" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>GGTAAAGTAAACAACTAAAAATATTCAATCAACATCACACAGCCAGCAGTAGAGTGTTTTGTGGTCTGCACATAGAGAGGGCACCACTTAGGGATCCTTTCAATTGAGCAAAAAAAAATCTGCATTTTTCTAT : CAATTAGCTGGTGTCCACGATGGTTGCACAAGGCTTCACTGTGGATTTAGATAAGCCACTTGTACACCAG : GTTGGCCACCTTGGAGAAGCTTATCAAGAGTGGGTTCACCAGCCCATTGTCAGCAAGGAAGGTCCTCGATTTTTTGCTAGTGACTTTTGGGAG : TTTCTGACTCGCACAGTTTGGTGGGCAATTCCTACCATATGGCTTCCAGTTGTGTGCTATAGCATCTCTGTTTCTATCCGTATGGGTCGTACTGTTCCAGAGGTGGCACTGTTGGTGGTTTTTGGCATTTTCATCTGGACACTGATGGAATACACTCTTCATCGTTTTCTTTTCCATATCAATACAACGAGCTATTG : GGGAAACACAATTCATTATCTTCTTCATGGCTGTCATCATAAGCATCCCATGGATGGTCTACGGCTGGTTTTTCCTCCTGCTGCAACGGCTATTCTCCTCGTACCA : TTCTGGAACTTGATCAAATTGCTGGCAACTCCCACTACTGCTCCTGCTTTGTTTGGAGGCGGTTTATTGGGCTATGTTATGTATGATGTAACCCACTACTACTTGCATCACGGGCAACCAACAGTTGAAGTGCCTAAAAATCTCAAG : AAATATCACTTGAATCATCATTTTCGTATCCAGAACAAAGGTTTTGGTATCACCTCTTCCTTCTGGGACAAAGTGTTTGGAACTCTACCACATTCAAAATCAGCCAAGAACAGATGATTCCCTTCGGATAGGAGAATCACAGCACTAAGTACTTTTTATTAGAAGGGTTAGAATTATTATTTTTTTCTTTGAAATCCAGTTCCAGTCTTTTCATTTTGCCACTATGTTCATGCTACAGTTTAATTGGAACTTGGCATTCCATCCTTGTGACAACTTGTGTAAGGGTTACGTAACCGTGCTGCGAAACAATTGTGCTCATCAGTCCATCTAGGTTGTATTTAATTTTATCATTGGGCTGTATGTTGGCCATTTATTTGTACCTTGTACCAGTTTGGCAATTGGAAAAATCCTGTTGATTCATGCAA</gDNA_template>
            <first_frame> G  K  V  N  N  *  K  Y  S  I  N  I  T  Q  P  A  V  E  C  F  V  V  C  T  *  R  G  H  H  L  G  I  L  S  I  E  Q  K  K  I  C  I  F  L   : S  I  S  W  C  P  R  W  L  H  K  A  S  L  W  I  *  I  S  H  L  Y  T  R :   L  A  T  L  E  K  L  I  K  S  G  F  T  S  P  L  S  A  R  K  V  L  D  F  L  L  V  T  F  G  S :   F  *  L  A  Q  F  G  G  Q  F  L  P  Y  G  F  Q  L  C  A  I  A  S  L  F  L  S  V  W  V  V  L  F  Q  R  W  H  C  W  W  F  L  A  F  S  S  G  H  *  W  N  T  L  F  I  V  F  F  S  I  S  I  Q  R  A  I   : G  E  T  Q  F  I  I  F  F  M  A  V  I  I  S  I  P  W  M  V  Y  G  W  F  F  L  L  L  Q  R  L  F  S  S  Y  H :   S  G  T  *  S  N  C  W  Q  L  P  L  L  L  L  L  C  L  E  A  V  Y  W  A  M  L  C  M  M  *  P  T  T  T  C  I  T  G  N  Q  Q  L  K  C  L  K  I  S  R :   N  I  T  *  I  I  I  F  V  S  R  T  K  V  L  V  S  P  L  P  S  G  T  K  C  L  E  L  Y  H  I  Q  N  Q  P  R  T  D  D  S  L  R  I  G  E  S  Q  H  *  V  L  F  I  R  R  V  R  I  I  I  F  F  F  E  I  Q  F  Q  S  F  H  F  A  T  M  F  M  L  Q  F  N  W  N  L  A  F  H  P  C  D  N  L  C  K  G  Y  V  T  V  L  R  N  N  C  A  H  Q  S  I  *  V  V  F  N  F  I  I  G  L  Y  V  G  H  L  F  V  P  C  T  S  L  A  I  G  K  I  L  L  I  H  A  </first_frame>
            <second_frame>  V  K  *  T  T  K  N  I  Q  S  T  S  H  S  Q  Q  *  S  V  L  W  S  A  H  R  E  G  T  T  *  G  S  F  Q  L  S  K  K  K  S  A  F  F  Y  :  Q  L  A  G  V  H  D  G  C  T  R  L  H  C  G  F  R  *  A  T  C  T  P   : G  W  P  P  W  R  S  L  S  R  V  G  S  P  A  H  C  Q  Q  G  R  S  S  I  F  C  *  *  L  L  G   : V  S  D  S  H  S  L  V  G  N  S  Y  H  M  A  S  S  C  V  L  *  H  L  C  F  Y  P  Y  G  S  Y  C  S  R  G  G  T  V  G  G  F  W  H  F  H  L  D  T  D  G  I  H  S  S  S  F  S  F  P  Y  Q  Y  N  E  L  L  :  G  K  H  N  S  L  S  S  S  W  L  S  S  *  A  S  H  G  W  S  T  A  G  F  S  S  C  C  N  G  Y  S  P  R  T   : I  L  E  L  D  Q  I  A  G  N  S  H  Y  C  S  C  F  V  W  R  R  F  I  G  L  C  Y  V  *  C  N  P  L  L  L  A  S  R  A  T  N  S  *  S  A  *  K  S  Q   : E  I  S  L  E  S  S  F  S  Y  P  E  Q  R  F  W  Y  H  L  F  L  L  G  Q  S  V  W  N  S  T  T  F  K  I  S  Q  E  Q  M  I  P  F  G  *  E  N  H  S  T  K  Y  F  L  L  E  G  L  E  L  L  F  F  S  L  K  S  S  S  S  L  F  I  L  P  L  C  S  C  Y  S  L  I  G  T  W  H  S  I  L  V  T  T  C  V  R  V  T  *  P  C  C  E  T  I  V  L  I  S  P  S  R  L  Y  L  I  L  S  L  G  C  M  L  A  I  Y  L  Y  L  V  P  V  W  Q  L  E  K  S  C  *  F  M  Q </second_frame>
            <third_frame>   *  S  K  Q  L  K  I  F  N  Q  H  H  T  A  S  S  R  V  F  C  G  L  H  I  E  R  A  P  L  R  D  P  F  N  *  A  K  K  N  L  H  F  S  I :   N  *  L  V  S  T  M  V  A  Q  G  F  T  V  D  L  D  K  P  L  V  H  Q  :  V  G  H  L  G  E  A  Y  Q  E  W  V  H  Q  P  I  V  S  K  E  G  P  R  F  F  A  S  D  F  W  E  :  F  L  T  R  T  V  W  W  A  I  P  T  I  W  L  P  V  V  C  Y  S  I  S  V  S  I  R  M  G  R  T  V  P  E  V  A  L  L  V  V  F  G  I  F  I  W  T  L  M  E  Y  T  L  H  R  F  L  F  H  I  N  T  T  S  Y  W :   G  N  T  I  H  Y  L  L  H  G  C  H  H  K  H  P  M  D  G  L  R  L  V  F  P  P  A  A  T  A  I  L  L  V  P  :  F  W  N  L  I  K  L  L  A  T  P  T  T  A  P  A  L  F  G  G  G  L  L  G  Y  V  M  Y  D  V  T  H  Y  Y  L  H  H  G  Q  P  T  V  E  V  P  K  N  L  K  :  K  Y  H  L  N  H  H  F  R  I  Q  N  K  G  F  G  I  T  S  S  F  W  D  K  V  F  G  T  L  P  H  S  K  S  A  K  N  R  *  F  P  S  D  R  R  I  T  A  L  S  T  F  Y  *  K  G  *  N  Y  Y  F  F  L  *  N  P  V  P  V  F  S  F  C  H  Y  V  H  A  T  V  *  L  E  L  G  I  P  S  L  *  Q  L  V  *  G  L  R  N  R  A  A  K  Q  L  C  S  S  V  H  L  G  C  I  *  F  Y  H  W  A  V  C  W  P  F  I  C  T  L  Y  Q  F  G  N  W  K  N  P  V  D  S  C   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02SLe0018B07.1" strand="+"/>
                <serials PGL_serial="10" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="62137" stop="62199"/>
                    <exon start="62787" stop="62879"/>
                    <exon start="63061" stop="63257"/>
                    <exon start="63364" stop="63469"/>
                    <exon start="64019" stop="64165"/>
                    <exon start="64570" stop="64686"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>720</number_coding_nucleotides>
                  <number_encoded_amino_acids>240</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>LVSTMVAQGFTVDLDKPLVHQVGHLGEAYQEWVHQPIVSKEGPRFFASDFWEFLTRTVWWAIPTIWLPVVCYSISVSIRMGRTVPEVALLVVFGIFIWTLMEYTLHRFLFHINTTSYWGNTIHYLLHGCHHKHPMDGLRLVFPPAATAILLVPFWNLIKLLATPTTAPALFGGGLLGYVMYDVTHYYLHHGQPTVEVPKNLKKYHLNHHFRIQNKGFGITSSFWDKVFGTLPHSKSAKNR*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="11" PGL_strand="+" PGL_start="65770" PGL_stop="66261"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="65770" e_stop="66261"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.998"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.998">
            <gDNA_exon_boundary e_start="65770" e_stop="66261" e_length="492"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="65770" stop="66261"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E203566" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="11" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>ATGTCTTGACCCTTGTTATATTCTTGCTTCTTGTCTCAGATACTAAATATTTGGAGGGAATTTTTATTGAGTCTGAATTTGGATTATCTTCAAACATGTCTTTTCCATGGAAGAAGTTGAAGAAGACAAGTATATCTCAATTGGTGAAGGACCATATTCATTCTCAAAAACCTCTTATGGTGGAAACTGGTTTCCCTTCTTCCCTTGTGGATCTTTTTGTCAAGAATCGTCGAAAGTTCATGAAAACTTCCAAGAAAAAGAGGGCTCCTCCAGTGGTGGCTGAGCTCCCTTTAAGTTCTCTTTCGACTCCACCTTCCCCTGTATGTTGCATATTTGAGAAGTCTGAGTTAAAGGGGTGTCAGGAAAAAGATGAAAGATTTGATCTTGATGAAGCTGTTGATAAAAACACGGTGTTAGTCGCGCTTCTGAAGGTCTTTCTGGTGGTGTTTTTGGTTTTAGGAACAAAGAAACTTGTAATGGGAATAACAATGT</gDNA_template>
            <first_frame> M  S  *  P  L  L  Y  S  C  F  L  S  Q  I  L  N  I  W  R  E  F  L  L  S  L  N  L  D  Y  L  Q  T  C  L  F  H  G  R  S  *  R  R  Q  V  Y  L  N  W  *  R  T  I  F  I  L  K  N  L  L  W  W  K  L  V  S  L  L  P  L  W  I  F  L  S  R  I  V  E  S  S  *  K  L  P  R  K  R  G  L  L  Q  W  W  L  S  S  L  *  V  L  F  R  L  H  L  P  L  Y  V  A  Y  L  R  S  L  S  *  R  G  V  R  K  K  M  K  D  L  I  L  M  K  L  L  I  K  T  R  C  *  S  R  F  *  R  S  F  W  W  C  F  W  F  *  E  Q  R  N  L  *  W  E  *  Q  C </first_frame>
            <second_frame>  C  L  D  P  C  Y  I  L  A  S  C  L  R  Y  *  I  F  G  G  N  F  Y  *  V  *  I  W  I  I  F  K  H  V  F  S  M  E  E  V  E  E  D  K  Y  I  S  I  G  E  G  P  Y  S  F  S  K  T  S  Y  G  G  N  W  F  P  F  F  P  C  G  S  F  C  Q  E  S  S  K  V  H  E  N  F  Q  E  K  E  G  S  S  S  G  G  *  A  P  F  K  F  S  F  D  S  T  F  P  C  M  L  H  I  *  E  V  *  V  K  G  V  S  G  K  R  *  K  I  *  S  *  *  S  C  *  *  K  H  G  V  S  R  A  S  E  G  L  S  G  G  V  F  G  F  R  N  K  E  T  C  N  G  N  N  N   </second_frame>
            <third_frame>   V  L  T  L  V  I  F  L  L  L  V  S  D  T  K  Y  L  E  G  I  F  I  E  S  E  F  G  L  S  S  N  M  S  F  P  W  K  K  L  K  K  T  S  I  S  Q  L  V  K  D  H  I  H  S  Q  K  P  L  M  V  E  T  G  F  P  S  S  L  V  D  L  F  V  K  N  R  R  K  F  M  K  T  S  K  K  K  R  A  P  P  V  V  A  E  L  P  L  S  S  L  S  T  P  P  S  P  V  C  C  I  F  E  K  S  E  L  K  G  C  Q  E  K  D  E  R  F  D  L  D  E  A  V  D  K  N  T  V  L  V  A  L  L  K  V  F  L  V  V  F  L  V  L  G  T  K  K  L  V  M  G  I  T  M  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02SLe0018B07.1" strand="+"/>
                <serials PGL_serial="11" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="65772" stop="66260"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>489</number_coding_nucleotides>
                  <number_encoded_amino_acids>163</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>VLTLVIFLLLVSDTKYLEGIFIESEFGLSSNMSFPWKKLKKTSISQLVKDHIHSQKPLMVETGFPSSLVDLFVKNRRKFMKTSKKKRAPPVVAELPLSSLSTPPSPVCCIFEKSELKGCQEKDERFDLDEAVDKNTVLVALLKVFLVVFLVLGTKKLVMGITM</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="12" PGL_strand="-" PGL_start="70051" PGL_stop="69611"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="70051" e_stop="69611"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.912"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.912">
            <gDNA_exon_boundary e_start="70051" e_stop="69611" e_length="441"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="70051" stop="69611"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E243215" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="12" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>TTATTGTAGATGATCAAATTTTTTCTTCGAATACAAAATTAAATTACAATACACACACAAAAAAAAATAGTTTAATTTTTTTTCTTTAAACTAAGGAATGAAAGAAAAAAATAATAAGAATAAGAAACTCAAATAATTATAATAAAAGAAGTCAAAAAATAATTTATGTATGAAAAAAATTAAAATATACCTTGAACTTTGATAGAAGAATCATATATACCTCTAAATAATTTTTTCAAAAAAATTAAAAGTAATAAATATAAATTTAAAACTAATTTTTTAACTTCCGTTAAATGAAGGGTATATGTGAGCCATTTTGTAACGACAGGGGTATATGTGAGCCGTTTGTATAACGGTAAGGGCATATATGAACCACTTTTATAACGAGGGGTATATCAGCTTCAAATAACAAAGTTTAGGGGTATATCAGACCCTTTTTCC</gDNA_template>
            <first_frame> L  L  *  M  I  K  F  F  L  R  I  Q  N  *  I  T  I  H  T  Q  K  K  I  V  *  F  F  F  F  K  L  R  N  E  R  K  K  *  *  E  *  E  T  Q  I  I  I  I  K  E  V  K  K  *  F  M  Y  E  K  N  *  N  I  P  *  T  L  I  E  E  S  Y  I  P  L  N  N  F  F  K  K  I  K  S  N  K  Y  K  F  K  T  N  F  L  T  S  V  K  *  R  V  Y  V  S  H  F  V  T  T  G  V  Y  V  S  R  L  Y  N  G  K  G  I  Y  E  P  L  L  *  R  G  V  Y  Q  L  Q  I  T  K  F  R  G  I  S  D  P  F  S </first_frame>
            <second_frame>  Y  C  R  *  S  N  F  F  F  E  Y  K  I  K  L  Q  Y  T  H  K  K  K  *  F  N  F  F  S  L  N  *  G  M  K  E  K  N  N  K  N  K  K  L  K  *  L  *  *  K  K  S  K  N  N  L  C  M  K  K  I  K  I  Y  L  E  L  *  *  K  N  H  I  Y  L  *  I  I  F  S  K  K  L  K  V  I  N  I  N  L  K  L  I  F  *  L  P  L  N  E  G  Y  M  *  A  I  L  *  R  Q  G  Y  M  *  A  V  C  I  T  V  R  A  Y  M  N  H  F  Y  N  E  G  Y  I  S  F  K  *  Q  S  L  G  V  Y  Q  T  L  F   </second_frame>
            <third_frame>   I  V  D  D  Q  I  F  S  S  N  T  K  L  N  Y  N  T  H  T  K  K  N  S  L  I  F  F  L  *  T  K  E  *  K  K  K  I  I  R  I  R  N  S  N  N  Y  N  K  R  S  Q  K  I  I  Y  V  *  K  K  L  K  Y  T  L  N  F  D  R  R  I  I  Y  T  S  K  *  F  F  Q  K  N  *  K  *  *  I  *  I  *  N  *  F  F  N  F  R  *  M  K  G  I  C  E  P  F  C  N  D  R  G  I  C  E  P  F  V  *  R  *  G  H  I  *  T  T  F  I  T  R  G  I  S  A  S  N  N  K  V  *  G  Y  I  R  P  F  F  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <none gDNA_id="C02SLe0018B07.1"/>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="13" PGL_strand="+" PGL_start="77446" PGL_stop="78360"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="77446" e_stop="78045"/>
            <exon e_start="78218" e_stop="78360"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.948" acc_prob="0.653" e_score="0.992"/>
          <exon-only e_score="0.979"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.992">
            <gDNA_exon_boundary e_start="77446" e_stop="78045" e_length="600"/>
          </exon>
          <intron i_serial="1" don_prob="0.948" acc_prob="0.653">
            <gDNA_intron_boundary i_start="78046" i_stop="78217" i_length="172"/>
          </intron>
          <exon e_serial="2" e_score="0.979">
            <gDNA_exon_boundary e_start="78218" e_stop="78360" e_length="143"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="77446" stop="78045"/>
              <exon start="78218" stop="78360"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E545973" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="77446" stop="78045"/>
              <exon start="78218" stop="78271"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E545966" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="77447" stop="78027"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E359125" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="13" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>TGAAGATATACTCCAAGTGCCAGGAATTAATTCTGCTGTGTTCACCAAAGGAATCTTATAAGAAACAGATTGATGCAATGCATAGTACTGCCTTAAAAGTTCTCTCATGGTTGGATAGATTTCTTGATAAAGTTGATATGTCTGTGGAAGAGATCACATCATCTGCAAAGGGATTTGATATTCTTATTTATCCTCAACAGCTTGTTAAGGAGTTCACATTATGTCAAACTTTGCCCAAATATCAGTGGGGCAGTGCAACACTAGCAGGAAACTTCGTGTGTCCTAGCTACTCTAATGTACAGAATAACACACTTGAAGAAGAATTATCATCTGGAACGACTCCATCTAGTGGTTCTTTGGTGTGTGTGACTTACAAGATATATTTAGCCACGGAAAGGGAATGCATTATGGAACATCTTGAAGGGTCTGAAGAGTTTGAGTTTGAGATTGGCAGCGGAGCCGTATCTCCTGTTCTTGAAGCAGTTGTAACACAGATGTCCGTTGACCAGTCTGCATGTTTTACTATGGAATTGCCTGCAAAAGAGATTGTTCTAGCAGTGGCTCATGATTCTGCAAATATCATTTCATTATTGTCTTCAG : GTACTTGCTTAATGAAATGTGAAGTCACTTTGCTGCGTGTGACAGTACCCCTGGAGGATAGAATGGAACAGGCCTTATTCTCTCCCCCATTATCAAAACAACGTGTTGAATATGCGGTGCAGCACATTAGAGAATCTTGTGCT</gDNA_template>
            <first_frame> *  R  Y  T  P  S  A  R  N  *  F  C  C  V  H  Q  R  N  L  I  R  N  R  L  M  Q  C  I  V  L  P  *  K  F  S  H  G  W  I  D  F  L  I  K  L  I  C  L  W  K  R  S  H  H  L  Q  R  D  L  I  F  L  F  I  L  N  S  L  L  R  S  S  H  Y  V  K  L  C  P  N  I  S  G  A  V  Q  H  *  Q  E  T  S  C  V  L  A  T  L  M  Y  R  I  T  H  L  K  K  N  Y  H  L  E  R  L  H  L  V  V  L  W  C  V  *  L  T  R  Y  I  *  P  R  K  G  N  A  L  W  N  I  L  K  G  L  K  S  L  S  L  R  L  A  A  E  P  Y  L  L  F  L  K  Q  L  *  H  R  C  P  L  T  S  L  H  V  L  L  W  N  C  L  Q  K  R  L  F  *  Q  W  L  M  I  L  Q  I  S  F  H  Y  C  L  Q  :  V  L  A  *  *  N  V  K  S  L  C  C  V  *  Q  Y  P  W  R  I  E  W  N  R  P  Y  S  L  P  H  Y  Q  N  N  V  L  N  M  R  C  S  T  L  E  N  L  V   </first_frame>
            <second_frame>  E  D  I  L  Q  V  P  G  I  N  S  A  V  F  T  K  G  I  L  *  E  T  D  *  C  N  A  *  Y  C  L  K  S  S  L  M  V  G  *  I  S  *  *  S  *  Y  V  C  G  R  D  H  I  I  C  K  G  I  *  Y  S  Y  L  S  S  T  A  C  *  G  V  H  I  M  S  N  F  A  Q  I  S  V  G  Q  C  N  T  S  R  K  L  R  V  S  *  L  L  *  C  T  E  *  H  T  *  R  R  I  I  I  W  N  D  S  I  *  W  F  F  G  V  C  D  L  Q  D  I  F  S  H  G  K  G  M  H  Y  G  T  S  *  R  V  *  R  V  *  V  *  D  W  Q  R  S  R  I  S  C  S  *  S  S  C  N  T  D  V  R  *  P  V  C  M  F  Y  Y  G  I  A  C  K  R  D  C  S  S  S  G  S  *  F  C  K  Y  H  F  I  I  V  F  R :   Y  L  L  N  E  M  *  S  H  F  A  A  C  D  S  T  P  G  G  *  N  G  T  G  L  I  L  S  P  I  I  K  T  T  C  *  I  C  G  A  A  H  *  R  I  L  C  </second_frame>
            <third_frame>   K  I  Y  S  K  C  Q  E  L  I  L  L  C  S  P  K  E  S  Y  K  K  Q  I  D  A  M  H  S  T  A  L  K  V  L  S  W  L  D  R  F  L  D  K  V  D  M  S  V  E  E  I  T  S  S  A  K  G  F  D  I  L  I  Y  P  Q  Q  L  V  K  E  F  T  L  C  Q  T  L  P  K  Y  Q  W  G  S  A  T  L  A  G  N  F  V  C  P  S  Y  S  N  V  Q  N  N  T  L  E  E  E  L  S  S  G  T  T  P  S  S  G  S  L  V  C  V  T  Y  K  I  Y  L  A  T  E  R  E  C  I  M  E  H  L  E  G  S  E  E  F  E  F  E  I  G  S  G  A  V  S  P  V  L  E  A  V  V  T  Q  M  S  V  D  Q  S  A  C  F  T  M  E  L  P  A  K  E  I  V  L  A  V  A  H  D  S  A  N  I  I  S  L  L  S  S   : G  T  C  L  M  K  C  E  V  T  L  L  R  V  T  V  P  L  E  D  R  M  E  Q  A  L  F  S  P  P  L  S  K  Q  R  V  E  Y  A  V  Q  H  I  R  E  S  C  A </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02SLe0018B07.1" strand="+"/>
                <serials PGL_serial="13" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="77448" stop="78045"/>
                    <exon start="78218" stop="78360"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>741</number_coding_nucleotides>
                  <number_encoded_amino_acids>247</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>KIYSKCQELILLCSPKESYKKQIDAMHSTALKVLSWLDRFLDKVDMSVEEITSSAKGFDILIYPQQLVKEFTLCQTLPKYQWGSATLAGNFVCPSYSNVQNNTLEEELSSGTTPSSGSLVCVTYKIYLATERECIMEHLEGSEEFEFEIGSGAVSPVLEAVVTQMSVDQSACFTMELPAKEIVLAVAHDSANIISLLSSGTCLMKCEVTLLRVTVPLEDRMEQALFSPPLSKQRVEYAVQHIRESCA</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="14" PGL_strand="+" PGL_start="78528" PGL_stop="81417"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="78528" e_stop="78562"/>
            <exon e_start="79634" e_stop="79771"/>
            <exon e_start="80739" e_stop="81262"/>
            <exon e_start="81374" e_stop="81417"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.997" acc_prob="0.965" e_score="0.971"/>
          <exon-intron don_prob="0.988" acc_prob="0.995" e_score="1.000"/>
          <exon-intron don_prob="0.000" acc_prob="0.750" e_score="0.914"/>
          <exon-only e_score="0.909"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.971">
            <gDNA_exon_boundary e_start="78528" e_stop="78562" e_length="35"/>
          </exon>
          <intron i_serial="1" don_prob="0.997" acc_prob="0.965">
            <gDNA_intron_boundary i_start="78563" i_stop="79633" i_length="1071"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="79634" e_stop="79771" e_length="138"/>
          </exon>
          <intron i_serial="2" don_prob="0.988" acc_prob="0.995">
            <gDNA_intron_boundary i_start="79772" i_stop="80738" i_length="967"/>
          </intron>
          <exon e_serial="3" e_score="0.914">
            <gDNA_exon_boundary e_start="80739" e_stop="81262" e_length="524"/>
          </exon>
          <intron i_serial="3" don_prob="0.000" acc_prob="0.750">
            <gDNA_intron_boundary i_start="81263" i_stop="81373" i_length="111"/>
          </intron>
          <exon e_serial="4" e_score="0.909">
            <gDNA_exon_boundary e_start="81374" e_stop="81417" e_length="44"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="78528" stop="78562"/>
              <exon start="79634" stop="79771"/>
              <exon start="80739" stop="81262"/>
              <exon start="81374" stop="81417"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E690301" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="78528" stop="78562"/>
              <exon start="79634" stop="79771"/>
              <exon start="80739" stop="81262"/>
              <exon start="81374" stop="81417"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E694141" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="14" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>ATATTTCACAGAGAGCTCTTGCTCGTGCTGCAAAG : ATACTTCATTCAAAACTCAATGGAAATATAGAAGCTGAACAACCAATCAACAGTATCAAGTCTGCAATACTATATGATGGTTCGATTTTGTCTTGTGATTCTCGGTTGTGTGGATATGATATTGCAACCTGCTTGGAG : GTGATTGAACACATGGAGGAACAGGACGCATGTTTGTTTGGGGATATTGTTCTCCGTTCATTTTGTCCACAGATTCTTATAGTCTCCACTCCCAATTATGAATACAATGTGATTCTCCAGAAATCTACTCCCCAATACCAGGAGGATGACCCAGATGAGAAGAGCCAGCAGCAGTTATGCAAATTCCGCAATCACGATCACAAGTTTGAGTGGACTAGACAGCAGTTCTGTGAATGGGCATCTGAGCTAGCTTTAAGGCATAATTATGATGTCGTGTTCAGTGGTGTTGGGGGAGAAGCTAACAAAGAACCAGGATTTGCCTCCCAAATTGCTGTTTTTAGAAGAAACGATCGCAGTCCCGTGAATGCAGATTTTCCTGAACACTATGATGTTATATGGGAATGGAGTAGTGACAATAAATAGTTGATGATTTTAACAACAGTTCATTTTGGTTAGTGATGTGGACTCCAGAAGCTATAGGAATTTTGTAATCCTTACCTAAATATGCTTGAAATTGTAGTAGA : AGATATGGTATGTTGTGAGGTCATACTCATAGTTACAGACAGAC</gDNA_template>
            <first_frame> I  F  H  R  E  L  L  L  V  L  Q  R :   Y  F  I  Q  N  S  M  E  I  *  K  L  N  N  Q  S  T  V  S  S  L  Q  Y  Y  M  M  V  R  F  C  L  V  I  L  G  C  V  D  M  I  L  Q  P  A  W  R :   *  L  N  T  W  R  N  R  T  H  V  C  L  G  I  L  F  S  V  H  F  V  H  R  F  L  *  S  P  L  P  I  M  N  T  M  *  F  S  R  N  L  L  P  N  T  R  R  M  T  Q  M  R  R  A  S  S  S  Y  A  N  S  A  I  T  I  T  S  L  S  G  L  D  S  S  S  V  N  G  H  L  S  *  L  *  G  I  I  M  M  S  C  S  V  V  L  G  E  K  L  T  K  N  Q  D  L  P  P  K  L  L  F  L  E  E  T  I  A  V  P  *  M  Q  I  F  L  N  T  M  M  L  Y  G  N  G  V  V  T  I  N  S  *  *  F  *  Q  Q  F  I  L  V  S  D  V  D  S  R  S  Y  R  N  F  V  I  L  T  *  I  C  L  K  L  *  *   : K  I  W  Y  V  V  R  S  Y  S  *  L  Q  T  D </first_frame>
            <second_frame>  Y  F  T  E  S  S  C  S  C  C  K   : D  T  S  F  K  T  Q  W  K  Y  R  S  *  T  T  N  Q  Q  Y  Q  V  C  N  T  I  *  W  F  D  F  V  L  *  F  S  V  V  W  I  *  Y  C  N  L  L  G   : G  D  *  T  H  G  G  T  G  R  M  F  V  W  G  Y  C  S  P  F  I  L  S  T  D  S  Y  S  L  H  S  Q  L  *  I  Q  C  D  S  P  E  I  Y  S  P  I  P  G  G  *  P  R  *  E  E  P  A  A  V  M  Q  I  P  Q  S  R  S  Q  V  *  V  D  *  T  A  V  L  *  M  G  I  *  A  S  F  K  A  *  L  *  C  R  V  Q  W  C  W  G  R  S  *  Q  R  T  R  I  C  L  P  N  C  C  F  *  K  K  R  S  Q  S  R  E  C  R  F  S  *  T  L  *  C  Y  M  G  M  E  *  *  Q  *  I  V  D  D  F  N  N  S  S  F  W  L  V  M  W  T  P  E  A  I  G  I  L  *  S  L  P  K  Y  A  *  N  C  S  R  :  R  Y  G  M  L  *  G  H  T  H  S  Y  R  Q   </second_frame>
            <third_frame>   I  S  Q  R  A  L  A  R  A  A  K  :  I  L  H  S  K  L  N  G  N  I  E  A  E  Q  P  I  N  S  I  K  S  A  I  L  Y  D  G  S  I  L  S  C  D  S  R  L  C  G  Y  D  I  A  T  C  L  E  :  V  I  E  H  M  E  E  Q  D  A  C  L  F  G  D  I  V  L  R  S  F  C  P  Q  I  L  I  V  S  T  P  N  Y  E  Y  N  V  I  L  Q  K  S  T  P  Q  Y  Q  E  D  D  P  D  E  K  S  Q  Q  Q  L  C  K  F  R  N  H  D  H  K  F  E  W  T  R  Q  Q  F  C  E  W  A  S  E  L  A  L  R  H  N  Y  D  V  V  F  S  G  V  G  G  E  A  N  K  E  P  G  F  A  S  Q  I  A  V  F  R  R  N  D  R  S  P  V  N  A  D  F  P  E  H  Y  D  V  I  W  E  W  S  S  D  N  K  *  L  M  I  L  T  T  V  H  F  G  *  *  C  G  L  Q  K  L  *  E  F  C  N  P  Y  L  N  M  L  E  I  V  V  E :   D  M  V  C  C  E  V  I  L  I  V  T  D  R  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02SLe0018B07.1" strand="+"/>
                <serials PGL_serial="14" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="78530" stop="78562"/>
                    <exon start="79634" stop="79771"/>
                    <exon start="80739" stop="81161"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>591</number_coding_nucleotides>
                  <number_encoded_amino_acids>197</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>ISQRALARAAKILHSKLNGNIEAEQPINSIKSAILYDGSILSCDSRLCGYDIATCLEVIEHMEEQDACLFGDIVLRSFCPQILIVSTPNYEYNVILQKSTPQYQEDDPDEKSQQQLCKFRNHDHKFEWTRQQFCEWASELALRHNYDVVFSGVGGEANKEPGFASQIAVFRRNDRSPVNADFPEHYDVIWEWSSDNK*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="2">
          <exon_coordinates>
            <exon e_start="80574" e_stop="80577"/>
            <exon e_start="80739" e_stop="81262"/>
            <exon e_start="81374" e_stop="81417"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.720" acc_prob="0.995" e_score="1.000"/>
          <exon-intron don_prob="0.000" acc_prob="0.750" e_score="0.910"/>
          <exon-only e_score="0.932"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="80574" e_stop="80577" e_length="4"/>
          </exon>
          <intron i_serial="1" don_prob="0.720" acc_prob="0.995">
            <gDNA_intron_boundary i_start="80578" i_stop="80738" i_length="161"/>
          </intron>
          <exon e_serial="2" e_score="0.910">
            <gDNA_exon_boundary e_start="80739" e_stop="81262" e_length="524"/>
          </exon>
          <intron i_serial="2" don_prob="0.000" acc_prob="0.750">
            <gDNA_intron_boundary i_start="81263" i_stop="81373" i_length="111"/>
          </intron>
          <exon e_serial="3" e_score="0.932">
            <gDNA_exon_boundary e_start="81374" e_stop="81417" e_length="44"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="80574" stop="80577"/>
              <exon start="80739" stop="81262"/>
              <exon start="81374" stop="81417"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E545972" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="14" AGS_serial="2" gDNA_strand="+"/>
          <translation>
            <gDNA_template>GGAG : GTGATTGAACACATGGAGGAACAGGACGCATGTTTGTTTGGGGATATTGTTCTCCGTTCATTTTGTCCACAGATTCTTATAGTCTCCACTCCCAATTATGAATACAATGTGATTCTCCAGAAATCTACTCCCCAATACCAGGAGGATGACCCAGATGAGAAGAGCCAGCAGCAGTTATGCAAATTCCGCAATCACGATCACAAGTTTGAGTGGACTAGACAGCAGTTCTGTGAATGGGCATCTGAGCTAGCTTTAAGGCATAATTATGATGTCGTGTTCAGTGGTGTTGGGGGAGAAGCTAACAAAGAACCAGGATTTGCCTCCCAAATTGCTGTTTTTAGAAGAAACGATCGCAGTCCCGTGAATGCAGATTTTCCTGAACACTATGATGTTATATGGGAATGGAGTAGTGACAATAAATAGTTGATGATTTTAACAACAGTTCATTTTGGTTAGTGATGTGGACTCCAGAAGCTATAGGAATTTTGTAATCCTTACCTAAATATGCTTGAAATTGTAGTAGA : AGATATGGTATGTTGTGAGGTCATACTCATAGTTACAGACAGAC</gDNA_template>
            <first_frame> G   : G  D  *  T  H  G  G  T  G  R  M  F  V  W  G  Y  C  S  P  F  I  L  S  T  D  S  Y  S  L  H  S  Q  L  *  I  Q  C  D  S  P  E  I  Y  S  P  I  P  G  G  *  P  R  *  E  E  P  A  A  V  M  Q  I  P  Q  S  R  S  Q  V  *  V  D  *  T  A  V  L  *  M  G  I  *  A  S  F  K  A  *  L  *  C  R  V  Q  W  C  W  G  R  S  *  Q  R  T  R  I  C  L  P  N  C  C  F  *  K  K  R  S  Q  S  R  E  C  R  F  S  *  T  L  *  C  Y  M  G  M  E  *  *  Q  *  I  V  D  D  F  N  N  S  S  F  W  L  V  M  W  T  P  E  A  I  G  I  L  *  S  L  P  K  Y  A  *  N  C  S  R  :  R  Y  G  M  L  *  G  H  T  H  S  Y  R  Q   </first_frame>
            <second_frame>  E  :  V  I  E  H  M  E  E  Q  D  A  C  L  F  G  D  I  V  L  R  S  F  C  P  Q  I  L  I  V  S  T  P  N  Y  E  Y  N  V  I  L  Q  K  S  T  P  Q  Y  Q  E  D  D  P  D  E  K  S  Q  Q  Q  L  C  K  F  R  N  H  D  H  K  F  E  W  T  R  Q  Q  F  C  E  W  A  S  E  L  A  L  R  H  N  Y  D  V  V  F  S  G  V  G  G  E  A  N  K  E  P  G  F  A  S  Q  I  A  V  F  R  R  N  D  R  S  P  V  N  A  D  F  P  E  H  Y  D  V  I  W  E  W  S  S  D  N  K  *  L  M  I  L  T  T  V  H  F  G  *  *  C  G  L  Q  K  L  *  E  F  C  N  P  Y  L  N  M  L  E  I  V  V  E :   D  M  V  C  C  E  V  I  L  I  V  T  D  R  </second_frame>
            <third_frame>   R :   *  L  N  T  W  R  N  R  T  H  V  C  L  G  I  L  F  S  V  H  F  V  H  R  F  L  *  S  P  L  P  I  M  N  T  M  *  F  S  R  N  L  L  P  N  T  R  R  M  T  Q  M  R  R  A  S  S  S  Y  A  N  S  A  I  T  I  T  S  L  S  G  L  D  S  S  S  V  N  G  H  L  S  *  L  *  G  I  I  M  M  S  C  S  V  V  L  G  E  K  L  T  K  N  Q  D  L  P  P  K  L  L  F  L  E  E  T  I  A  V  P  *  M  Q  I  F  L  N  T  M  M  L  Y  G  N  G  V  V  T  I  N  S  *  *  F  *  Q  Q  F  I  L  V  S  D  V  D  S  R  S  Y  R  N  F  V  I  L  T  *  I  C  L  K  L  *  *   : K  I  W  Y  V  V  R  S  Y  S  *  L  Q  T  D </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02SLe0018B07.1" strand="+"/>
                <serials PGL_serial="14" AGS_serial="2" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="80575" stop="80577"/>
                    <exon start="80739" stop="81161"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>423</number_coding_nucleotides>
                  <number_encoded_amino_acids>141</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>EVIEHMEEQDACLFGDIVLRSFCPQILIVSTPNYEYNVILQKSTPQYQEDDPDEKSQQQLCKFRNHDHKFEWTRQQFCEWASELALRHNYDVVFSGVGGEANKEPGFASQIAVFRRNDRSPVNADFPEHYDVIWEWSSDNK*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="15" PGL_strand="+" PGL_start="86393" PGL_stop="88379"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="86393" e_stop="88379"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.997"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.997">
            <gDNA_exon_boundary e_start="86393" e_stop="88379" e_length="1987"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="86393" stop="87152"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E717686" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="86541" stop="87395"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E700902" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="86547" stop="87389"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E702599" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="86622" stop="87108"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E254676" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="86624" stop="87416"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E263037" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="86624" stop="87108"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E256435" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="86624" stop="87007"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E258518" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="86625" stop="87358"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E212667" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="86625" stop="87237"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E212755" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="86625" stop="87185"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E376492" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="86625" stop="87134"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E208245" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="86644" stop="87109"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E305203" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="86717" stop="87622"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E707477" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="86881" stop="87353"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E255733" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="87027" stop="87808"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E703622" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="87350" stop="88113"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E710241" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="87508" stop="88234"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E711698" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="87759" stop="88379"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E376491" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="15" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>TTTTAACATTTATTTCATTCCACGTTTGTATTAGGGTCTTATTAAATACTTTTTTTAATTTATTCTGTGTTTGTATTAGGATCTCACTAAATTTAAATTCATATGATAAAATTACACATTAAGATCACTTCATATTCAGAATCGAATATGAGATCTTTGGTTTAAGAACGAAGAAATACTTATAAATTAACAGGTTATTTGTTCGTTCAATAGTCCTAACTTCCTTCGATGGAGAATGAAAAAGATAAACTTCATGTTGTGATGTTTCCATGGCTAGCCATGGGACATATCATACCTTTTTTTCATCTATCAAAGTGTTTAGCACGAAGGGGCCATAGAGTCACCTTCATTTCAACTCCAAGAAACATTGAAAGAGTCGTCAATAAAGTTCCCTCTGATCTTGCTCATCTGTTGCATATTGTGTGGTTTCAATTGCCTAAAGTTGAAAACTTGCCGGATGATGCAGAGTCATCGATGGATATTCCTTACCAAAAAGCTCAGTTCTTGAAGATAGCTTTCGATTCGCTCGAAATCCCACTGACCAATTATCTTGAGAGTTCATCAAATCCCAAACCAGATTGGATTGTCTATGACTATGCTTCTCACTGGCTACCTCAAATTGCAGGTAAATTAGGCGTTTCTCGCGCCTTTTTTAGTCTGTTTACTGCTGCAACCATGTCATTTTATGGACCTCCTTGTGCTTTGTTAAATGATGAAAGGTCAATAGCTGAGGACTATACAGTTGTTCCAAAATGGATTCCTTTCGAAACGAAAGTTGTGTATAGGCTGCATGAGATTAAGAAGAATTTCGAAGCACCAGCTGATGAATCAGGTACATCTGATGGAGCCAGATTTGGTGCTTCAATTGATGCAAGTGATGTCATATTGTTTCGAAATTGTGTTGAGTTTGAATCCGAATGGTTCAGCTTGGTTTCTGAGCTTTATCAGAAACCTATTATATCCATTGGTGTGCTACCTCCATCTGTTGTAGTTGATCAAGAACAAGATGACAGCAATGATGCGTCGTGGTCAGGAATCAAGAGTTGGCTAGATAAGCACAATCAAGATTCTGTTGTTTATGTTGCACTTGGAACTGAAGCAACACTGAATCAACAAGAGCTGAATGAGCTAGCTTTGGGGTTAGAAAAATGCGGATTACCATTCGTTTGGGTATTAAGAGATCAGCCAAAACATAATCAACAAGATTCGTGTATTCAGCTGCCTGATGGATACGAAGACAGAGTCAAAAACAGAGGTGTAATATACAAAGGATGGGTACCACAGACGAAGATACTGAGTCATTCGTCAGTAGGTGGATTCTTGACTCATTGTGGATGGAATTCGGTCATAGAAGCGCTATGTTTTGGGCGGGTTTTGGTTATGTTCCCGGTGTTGAATGATCAAGGATTGAATACAAGGTTGTTGCAAGAGAAAGGAGTTGGTGTAGAGATACCAAGAAATGAAAAAGATGGATTTTTCACTAGTGATTCAGTGGCTGAAGCTGTGAAGTTTGGTGTAGTGAGTGAAGAGGGTGAGTTGTTGAGAGCTAATGCAAGACAAATGAGTTGTTTGTTTGGAGATAGGAAGAGAAATGAACAACTTATTGATGATTGTGTTGGTTATTTCATGGAAAATAGGATAAGCAAATCTAATAGCTCCATCGGTTGACTATCTAACTTTTTACCTGAGTTCGATTCTCATCTTCTATTTCCCCAAAAAAGGAGTTAAGAAAGTAGTCGTTGCAATCGAGTTTCTTACTTTTTTTACACCTTGTTTGGATGATTGTTACCTGTTTTATTGTATTGTATTGTTAGTTTAAATATAATGTTTGTTTCAACTGTTATTTATATTCTATTATATGGTATCGTTCAAATCTATCGTTGTTATACTCATTTTATGTAACGATTTGGTGTGATTGTGTTGTTACCTTGATAATTTCTTTTCATTTTGTCTTTATTTATTATTTAATAATCATATTTCATCTTTT</gDNA_template>
            <first_frame> F  *  H  L  F  H  S  T  F  V  L  G  S  Y  *  I  L  F  L  I  Y  S  V  F  V  L  G  S  H  *  I  *  I  H  M  I  K  L  H  I  K  I  T  S  Y  S  E  S  N  M  R  S  L  V  *  E  R  R  N  T  Y  K  L  T  G  Y  L  F  V  Q  *  S  *  L  P  S  M  E  N  E  K  D  K  L  H  V  V  M  F  P  W  L  A  M  G  H  I  I  P  F  F  H  L  S  K  C  L  A  R  R  G  H  R  V  T  F  I  S  T  P  R  N  I  E  R  V  V  N  K  V  P  S  D  L  A  H  L  L  H  I  V  W  F  Q  L  P  K  V  E  N  L  P  D  D  A  E  S  S  M  D  I  P  Y  Q  K  A  Q  F  L  K  I  A  F  D  S  L  E  I  P  L  T  N  Y  L  E  S  S  S  N  P  K  P  D  W  I  V  Y  D  Y  A  S  H  W  L  P  Q  I  A  G  K  L  G  V  S  R  A  F  F  S  L  F  T  A  A  T  M  S  F  Y  G  P  P  C  A  L  L  N  D  E  R  S  I  A  E  D  Y  T  V  V  P  K  W  I  P  F  E  T  K  V  V  Y  R  L  H  E  I  K  K  N  F  E  A  P  A  D  E  S  G  T  S  D  G  A  R  F  G  A  S  I  D  A  S  D  V  I  L  F  R  N  C  V  E  F  E  S  E  W  F  S  L  V  S  E  L  Y  Q  K  P  I  I  S  I  G  V  L  P  P  S  V  V  V  D  Q  E  Q  D  D  S  N  D  A  S  W  S  G  I  K  S  W  L  D  K  H  N  Q  D  S  V  V  Y  V  A  L  G  T  E  A  T  L  N  Q  Q  E  L  N  E  L  A  L  G  L  E  K  C  G  L  P  F  V  W  V  L  R  D  Q  P  K  H  N  Q  Q  D  S  C  I  Q  L  P  D  G  Y  E  D  R  V  K  N  R  G  V  I  Y  K  G  W  V  P  Q  T  K  I  L  S  H  S  S  V  G  G  F  L  T  H  C  G  W  N  S  V  I  E  A  L  C  F  G  R  V  L  V  M  F  P  V  L  N  D  Q  G  L  N  T  R  L  L  Q  E  K  G  V  G  V  E  I  P  R  N  E  K  D  G  F  F  T  S  D  S  V  A  E  A  V  K  F  G  V  V  S  E  E  G  E  L  L  R  A  N  A  R  Q  M  S  C  L  F  G  D  R  K  R  N  E  Q  L  I  D  D  C  V  G  Y  F  M  E  N  R  I  S  K  S  N  S  S  I  G  *  L  S  N  F  L  P  E  F  D  S  H  L  L  F  P  Q  K  R  S  *  E  S  S  R  C  N  R  V  S  Y  F  F  Y  T  L  F  G  *  L  L  P  V  L  L  Y  C  I  V  S  L  N  I  M  F  V  S  T  V  I  Y  I  L  L  Y  G  I  V  Q  I  Y  R  C  Y  T  H  F  M  *  R  F  G  V  I  V  L  L  P  *  *  F  L  F  I  L  S  L  F  I  I  *  *  S  Y  F  I  F  </first_frame>
            <second_frame>  F  N  I  Y  F  I  P  R  L  Y  *  G  L  I  K  Y  F  F  *  F  I  L  C  L  Y  *  D  L  T  K  F  K  F  I  *  *  N  Y  T  L  R  S  L  H  I  Q  N  R  I  *  D  L  W  F  K  N  E  E  I  L  I  N  *  Q  V  I  C  S  F  N  S  P  N  F  L  R  W  R  M  K  K  I  N  F  M  L  *  C  F  H  G  *  P  W  D  I  S  Y  L  F  F  I  Y  Q  S  V  *  H  E  G  A  I  E  S  P  S  F  Q  L  Q  E  T  L  K  E  S  S  I  K  F  P  L  I  L  L  I  C  C  I  L  C  G  F  N  C  L  K  L  K  T  C  R  M  M  Q  S  H  R  W  I  F  L  T  K  K  L  S  S  *  R  *  L  S  I  R  S  K  S  H  *  P  I  I  L  R  V  H  Q  I  P  N  Q  I  G  L  S  M  T  M  L  L  T  G  Y  L  K  L  Q  V  N  *  A  F  L  A  P  F  L  V  C  L  L  L  Q  P  C  H  F  M  D  L  L  V  L  C  *  M  M  K  G  Q  *  L  R  T  I  Q  L  F  Q  N  G  F  L  S  K  R  K  L  C  I  G  C  M  R  L  R  R  I  S  K  H  Q  L  M  N  Q  V  H  L  M  E  P  D  L  V  L  Q  L  M  Q  V  M  S  Y  C  F  E  I  V  L  S  L  N  P  N  G  S  A  W  F  L  S  F  I  R  N  L  L  Y  P  L  V  C  Y  L  H  L  L  *  L  I  K  N  K  M  T  A  M  M  R  R  G  Q  E  S  R  V  G  *  I  S  T  I  K  I  L  L  F  M  L  H  L  E  L  K  Q  H  *  I  N  K  S  *  M  S  *  L  W  G  *  K  N  A  D  Y  H  S  F  G  Y  *  E  I  S  Q  N  I  I  N  K  I  R  V  F  S  C  L  M  D  T  K  T  E  S  K  T  E  V  *  Y  T  K  D  G  Y  H  R  R  R  Y  *  V  I  R  Q  *  V  D  S  *  L  I  V  D  G  I  R  S  *  K  R  Y  V  L  G  G  F  W  L  C  S  R  C  *  M  I  K  D  *  I  Q  G  C  C  K  R  K  E  L  V  *  R  Y  Q  E  M  K  K  M  D  F  S  L  V  I  Q  W  L  K  L  *  S  L  V  *  *  V  K  R  V  S  C  *  E  L  M  Q  D  K  *  V  V  C  L  E  I  G  R  E  M  N  N  L  L  M  I  V  L  V  I  S  W  K  I  G  *  A  N  L  I  A  P  S  V  D  Y  L  T  F  Y  L  S  S  I  L  I  F  Y  F  P  K  K  G  V  K  K  V  V  V  A  I  E  F  L  T  F  F  T  P  C  L  D  D  C  Y  L  F  Y  C  I  V  L  L  V  *  I  *  C  L  F  Q  L  L  F  I  F  Y  Y  M  V  S  F  K  S  I  V  V  I  L  I  L  C  N  D  L  V  *  L  C  C  Y  L  D  N  F  F  S  F  C  L  Y  L  L  F  N  N  H  I  S  S  F </second_frame>
            <third_frame>   L  T  F  I  S  F  H  V  C  I  R  V  L  L  N  T  F  F  N  L  F  C  V  C  I  R  I  S  L  N  L  N  S  Y  D  K  I  T  H  *  D  H  F  I  F  R  I  E  Y  E  I  F  G  L  R  T  K  K  Y  L  *  I  N  R  L  F  V  R  S  I  V  L  T  S  F  D  G  E  *  K  R  *  T  S  C  C  D  V  S  M  A  S  H  G  T  Y  H  T  F  F  S  S  I  K  V  F  S  T  K  G  P  *  S  H  L  H  F  N  S  K  K  H  *  K  S  R  Q  *  S  S  L  *  S  C  S  S  V  A  Y  C  V  V  S  I  A  *  S  *  K  L  A  G  *  C  R  V  I  D  G  Y  S  L  P  K  S  S  V  L  E  D  S  F  R  F  A  R  N  P  T  D  Q  L  S  *  E  F  I  K  S  Q  T  R  L  D  C  L  *  L  C  F  S  L  A  T  S  N  C  R  *  I  R  R  F  S  R  L  F  *  S  V  Y  C  C  N  H  V  I  L  W  T  S  L  C  F  V  K  *  *  K  V  N  S  *  G  L  Y  S  C  S  K  M  D  S  F  R  N  E  S  C  V  *  A  A  *  D  *  E  E  F  R  S  T  S  *  *  I  R  Y  I  *  W  S  Q  I  W  C  F  N  *  C  K  *  C  H  I  V  S  K  L  C  *  V  *  I  R  M  V  Q  L  G  F  *  A  L  S  E  T  Y  Y  I  H  W  C  A  T  S  I  C  C  S  *  S  R  T  R  *  Q  Q  *  C  V  V  V  R  N  Q  E  L  A  R  *  A  Q  S  R  F  C  C  L  C  C  T  W  N  *  S  N  T  E  S  T  R  A  E  *  A  S  F  G  V  R  K  M  R  I  T  I  R  L  G  I  K  R  S  A  K  T  *  S  T  R  F  V  Y  S  A  A  *  W  I  R  R  Q  S  Q  K  Q  R  C  N  I  Q  R  M  G  T  T  D  E  D  T  E  S  F  V  S  R  W  I  L  D  S  L  W  M  E  F  G  H  R  S  A  M  F  W  A  G  F  G  Y  V  P  G  V  E  *  S  R  I  E  Y  K  V  V  A  R  E  R  S  W  C  R  D  T  K  K  *  K  R  W  I  F  H  *  *  F  S  G  *  S  C  E  V  W  C  S  E  *  R  G  *  V  V  E  S  *  C  K  T  N  E  L  F  V  W  R  *  E  E  K  *  T  T  Y  *  *  L  C  W  L  F  H  G  K  *  D  K  Q  I  *  *  L  H  R  L  T  I  *  L  F  T  *  V  R  F  S  S  S  I  S  P  K  K  E  L  R  K  *  S  L  Q  S  S  F  L  L  F  L  H  L  V  W  M  I  V  T  C  F  I  V  L  Y  C  *  F  K  Y  N  V  C  F  N  C  Y  L  Y  S  I  I  W  Y  R  S  N  L  S  L  L  Y  S  F  Y  V  T  I  W  C  D  C  V  V  T  L  I  I  S  F  H  F  V  F  I  Y  Y  L  I  I  I  F  H  L   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02SLe0018B07.1" strand="+"/>
                <serials PGL_serial="15" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="86612" stop="88060"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>1446</number_coding_nucleotides>
                  <number_encoded_amino_acids>482</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>LPSMENEKDKLHVVMFPWLAMGHIIPFFHLSKCLARRGHRVTFISTPRNIERVVNKVPSDLAHLLHIVWFQLPKVENLPDDAESSMDIPYQKAQFLKIAFDSLEIPLTNYLESSSNPKPDWIVYDYASHWLPQIAGKLGVSRAFFSLFTAATMSFYGPPCALLNDERSIAEDYTVVPKWIPFETKVVYRLHEIKKNFEAPADESGTSDGARFGASIDASDVILFRNCVEFESEWFSLVSELYQKPIISIGVLPPSVVVDQEQDDSNDASWSGIKSWLDKHNQDSVVYVALGTEATLNQQELNELALGLEKCGLPFVWVLRDQPKHNQQDSCIQLPDGYEDRVKNRGVIYKGWVPQTKILSHSSVGGFLTHCGWNSVIEALCFGRVLVMFPVLNDQGLNTRLLQEKGVGVEIPRNEKDGFFTSDSVAEAVKFGVVSEEGELLRANARQMSCLFGDRKRNEQLIDDCVGYFMENRISKSNSSIG*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="16" PGL_strand="-" PGL_start="87602" PGL_stop="86946"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="87602" e_stop="86946"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.994"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.994">
            <gDNA_exon_boundary e_start="87602" e_stop="86946" e_length="657"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="87602" stop="86946"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E272131" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="16" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>ACGAATCTTGTTGATTATGTTTTGGCTGATCTCTTAATACCCAAACGAATGGTAATCCGCATTTTTCTAACCCCAAAGCTAGCTCATTCAGCTCTTGTTGATTCAGTGTTGCTTCAGTTCCAAGTGCAACATAAACAACAGAATCTTGATTGTGCTTATCTAGCCAACTCTTGATTCCTGACCACGACGCATCATTGCTGTCATCTTGTTCTTGATCAACTACAACAGATGGAGGTAGCACACCAATGGATATAATAGGTTTCTGATAAAGCTCAGAAACCAAGCTGAACCATTCGGATTCAAACTCAACACAATTTCGAAACAATATGACATCACTTGCATCAATTGAAGCACCAAATCTGGCTCCATCAGATGTACCTGATTCATCAGCTGGTGCTTCGAAATTCTTCTTAATCTCATGCAGCCTATACACAACTTTCGTTTCGAAAGGAATCCATTTTGGAACAACTGTATAGTCCTCAGCTATTGACCTTTCATCATTTAACAAAGCACAAGGAGGTCCATAAAATGACATGGTTGCAGCAGTAAACAGACTAAAAAAGGCGCGAGAAACGCCTAATTTACCTGCAATTTGAGGTAGCCAGTGAGAAGCATAGTCATAGACAATCCAATCTGGTTTGGGATTTGATGAACTCT</gDNA_template>
            <first_frame> T  N  L  V  D  Y  V  L  A  D  L  L  I  P  K  R  M  V  I  R  I  F  L  T  P  K  L  A  H  S  A  L  V  D  S  V  L  L  Q  F  Q  V  Q  H  K  Q  Q  N  L  D  C  A  Y  L  A  N  S  *  F  L  T  T  T  H  H  C  C  H  L  V  L  D  Q  L  Q  Q  M  E  V  A  H  Q  W  I  *  *  V  S  D  K  A  Q  K  P  S  *  T  I  R  I  Q  T  Q  H  N  F  E  T  I  *  H  H  L  H  Q  L  K  H  Q  I  W  L  H  Q  M  Y  L  I  H  Q  L  V  L  R  N  S  S  *  S  H  A  A  Y  T  Q  L  S  F  R  K  E  S  I  L  E  Q  L  Y  S  P  Q  L  L  T  F  H  H  L  T  K  H  K  E  V  H  K  M  T  W  L  Q  Q  *  T  D  *  K  R  R  E  K  R  L  I  Y  L  Q  F  E  V  A  S  E  K  H  S  H  R  Q  S  N  L  V  W  D  L  M  N  S </first_frame>
            <second_frame>  R  I  L  L  I  M  F  W  L  I  S  *  Y  P  N  E  W  *  S  A  F  F  *  P  Q  S  *  L  I  Q  L  L  L  I  Q  C  C  F  S  S  K  C  N  I  N  N  R  I  L  I  V  L  I  *  P  T  L  D  S  *  P  R  R  I  I  A  V  I  L  F  L  I  N  Y  N  R  W  R  *  H  T  N  G  Y  N  R  F  L  I  K  L  R  N  Q  A  E  P  F  G  F  K  L  N  T  I  S  K  Q  Y  D  I  T  C  I  N  *  S  T  K  S  G  S  I  R  C  T  *  F  I  S  W  C  F  E  I  L  L  N  L  M  Q  P  I  H  N  F  R  F  E  R  N  P  F  W  N  N  C  I  V  L  S  Y  *  P  F  I  I  *  Q  S  T  R  R  S  I  K  *  H  G  C  S  S  K  Q  T  K  K  G  A  R  N  A  *  F  T  C  N  L  R  *  P  V  R  S  I  V  I  D  N  P  I  W  F  G  I  *  *  T   </second_frame>
            <third_frame>   E  S  C  *  L  C  F  G  *  S  L  N  T  Q  T  N  G  N  P  H  F  S  N  P  K  A  S  S  F  S  S  C  *  F  S  V  A  S  V  P  S  A  T  *  T  T  E  S  *  L  C  L  S  S  Q  L  L  I  P  D  H  D  A  S  L  L  S  S  C  S  *  S  T  T  T  D  G  G  S  T  P  M  D  I  I  G  F  *  *  S  S  E  T  K  L  N  H  S  D  S  N  S  T  Q  F  R  N  N  M  T  S  L  A  S  I  E  A  P  N  L  A  P  S  D  V  P  D  S  S  A  G  A  S  K  F  F  L  I  S  C  S  L  Y  T  T  F  V  S  K  G  I  H  F  G  T  T  V  *  S  S  A  I  D  L  S  S  F  N  K  A  Q  G  G  P  *  N  D  M  V  A  A  V  N  R  L  K  K  A  R  E  T  P  N  L  P  A  I  *  G  S  Q  *  E  A  *  S  *  T  I  Q  S  G  L  G  F  D  E  L  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02SLe0018B07.1" strand="-"/>
                <serials PGL_serial="16" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="87333" stop="87127"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>204</number_coding_nucleotides>
                  <number_encoded_amino_acids>68</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>SSETKLNHSDSNSTQFRNNMTSLASIEAPNLAPSDVPDSSAGASKFFLISCSLYTTFVSKGIHFGTTV*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="17" PGL_strand="-" PGL_start="93206" PGL_stop="91395"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="93206" e_stop="92866"/>
            <exon e_start="92245" e_stop="91395"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.997" acc_prob="1.000" e_score="0.994"/>
          <exon-only e_score="0.986"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.994">
            <gDNA_exon_boundary e_start="93206" e_stop="92866" e_length="341"/>
          </exon>
          <intron i_serial="1" don_prob="0.997" acc_prob="1.000">
            <gDNA_intron_boundary i_start="92865" i_stop="92246" i_length="620"/>
          </intron>
          <exon e_serial="2" e_score="0.986">
            <gDNA_exon_boundary e_start="92245" e_stop="91395" e_length="851"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="93206" stop="92866"/>
              <exon start="92245" stop="91675"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E727261" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="91887" stop="91395"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E715400" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="17" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>GTCTCCGGATCGTCTGGCTGGAGAGCTGTACTTCCTTGATGATACAATCTCTTTTACACCTGAGGAACTTTCCAGGGCTCCGGCTGAAGTCTTAGGCAGAAGCAGCCATGGTACATCATACAGGGCAACACTGGAGAATGGGTTGCTTCTGACTGTGAAATGGTTGAGAGAAGGAGTGGCGAAGCAGAGGAAGGATTTTGCGAAGGAGGCTAAAGAGTTTACTAATATTAGGCATCCTAATGTAGTAGGATTAAGAGGTTACTACTGGGGTCCCACACAACATGAGAAGCTCATTCTTTCGGATTATATATCTCCTGGAAGTCTTGCAAGTTTCCTCTATG : ATCGGCCTGGTAGAAAAGGTCCACCACTAACCTGGCCCCAAAGACTCAAAATATCAGTTGATGTTGCACGTGGCTTGAACTATCTCCATTTTGATCGGGAGGTTCCACATGGAAATCTTAAAGCAACCAACATCTTGTTGGATGGGCCTGACCTTAATGCAAGGGTTGCAGATTACTGCCTTCACCGCCTCATGACTCAAGCCGGCACAATAGAACAGATTCTTGATGCAGGAGTTTTGGGTTATCGTGCCCCTGAGTTGGCTGCATCAAAGAAACCACTGCCTTCCTTCAAATCAGATGTATATGCTTTTGGAGTTATTTTGTTGGAGCTGCTTAGTGGAAAATGTGCAGGTGATGTTGTCTCTGGCGAAGATGGCGGAGTAGACTTGACTGACTGGGTAAGGTTGAAGGTGGCAGAAGGTCGTAGCTCTGATTGTTTTGATAACGTTTTGTCACCTGAGTTGGAAAATCCAGCAATGGAGAAGCAAATGAAGGAGGTTCTTGGTATAGCTGTGCGATGCATTCGTTCTATATCTGAGAGACCTGGTATCAAGACTATATATGAGGACCTTTCGTCTATATAGTTTGTACTCATCTGGTTTTGCTCTACTTTGGGAATCAAATAGCTCATTGACTTCCCTTTTGAGTAGTAGGATTAGCACAGTTAGTGTGTGAATGGGGCTAGTTTTATTGACCATTGTTTGTTGTAAATTGGGGCATATTTAATGTGTAAACAATCTTTTCTCCCCGTTTGGCTTATGAGCTTCCAATGTTTGTCAATTTTTTGGAGTAAATACTTGTGACTTTATTTTCAAAGTTTTGCAGCACATTTTCACAGAACATTTACAGAT</gDNA_template>
            <first_frame> V  S  G  S  S  G  W  R  A  V  L  P  *  *  Y  N  L  F  Y  T  *  G  T  F  Q  G  S  G  *  S  L  R  Q  K  Q  P  W  Y  I  I  Q  G  N  T  G  E  W  V  A  S  D  C  E  M  V  E  R  R  S  G  E  A  E  E  G  F  C  E  G  G  *  R  V  Y  *  Y  *  A  S  *  C  S  R  I  K  R  L  L  L  G  S  H  T  T  *  E  A  H  S  F  G  L  Y  I  S  W  K  S  C  K  F  P  L  * :   S  A  W  *  K  R  S  T  T  N  L  A  P  K  T  Q  N  I  S  *  C  C  T  W  L  E  L  S  P  F  *  S  G  G  S  T  W  K  S  *  S  N  Q  H  L  V  G  W  A  *  P  *  C  K  G  C  R  L  L  P  S  P  P  H  D  S  S  R  H  N  R  T  D  S  *  C  R  S  F  G  L  S  C  P  *  V  G  C  I  K  E  T  T  A  F  L  Q  I  R  C  I  C  F  W  S  Y  F  V  G  A  A  *  W  K  M  C  R  *  C  C  L  W  R  R  W  R  S  R  L  D  *  L  G  K  V  E  G  G  R  R  S  *  L  *  L  F  *  *  R  F  V  T  *  V  G  K  S  S  N  G  E  A  N  E  G  G  S  W  Y  S  C  A  M  H  S  F  Y  I  *  E  T  W  Y  Q  D  Y  I  *  G  P  F  V  Y  I  V  C  T  H  L  V  L  L  Y  F  G  N  Q  I  A  H  *  L  P  F  *  V  V  G  L  A  Q  L  V  C  E  W  G  *  F  Y  *  P  L  F  V  V  N  W  G  I  F  N  V  *  T  I  F  S  P  R  L  A  Y  E  L  P  M  F  V  N  F  L  E  *  I  L  V  T  L  F  S  K  F  C  S  T  F  S  Q  N  I  Y  R  </first_frame>
            <second_frame>  S  P  D  R  L  A  G  E  L  Y  F  L  D  D  T  I  S  F  T  P  E  E  L  S  R  A  P  A  E  V  L  G  R  S  S  H  G  T  S  Y  R  A  T  L  E  N  G  L  L  L  T  V  K  W  L  R  E  G  V  A  K  Q  R  K  D  F  A  K  E  A  K  E  F  T  N  I  R  H  P  N  V  V  G  L  R  G  Y  Y  W  G  P  T  Q  H  E  K  L  I  L  S  D  Y  I  S  P  G  S  L  A  S  F  L  Y   : D  R  P  G  R  K  G  P  P  L  T  W  P  Q  R  L  K  I  S  V  D  V  A  R  G  L  N  Y  L  H  F  D  R  E  V  P  H  G  N  L  K  A  T  N  I  L  L  D  G  P  D  L  N  A  R  V  A  D  Y  C  L  H  R  L  M  T  Q  A  G  T  I  E  Q  I  L  D  A  G  V  L  G  Y  R  A  P  E  L  A  A  S  K  K  P  L  P  S  F  K  S  D  V  Y  A  F  G  V  I  L  L  E  L  L  S  G  K  C  A  G  D  V  V  S  G  E  D  G  G  V  D  L  T  D  W  V  R  L  K  V  A  E  G  R  S  S  D  C  F  D  N  V  L  S  P  E  L  E  N  P  A  M  E  K  Q  M  K  E  V  L  G  I  A  V  R  C  I  R  S  I  S  E  R  P  G  I  K  T  I  Y  E  D  L  S  S  I  *  F  V  L  I  W  F  C  S  T  L  G  I  K  *  L  I  D  F  P  F  E  *  *  D  *  H  S  *  C  V  N  G  A  S  F  I  D  H  C  L  L  *  I  G  A  Y  L  M  C  K  Q  S  F  L  P  V  W  L  M  S  F  Q  C  L  S  I  F  W  S  K  Y  L  *  L  Y  F  Q  S  F  A  A  H  F  H  R  T  F  T  D </second_frame>
            <third_frame>   L  R  I  V  W  L  E  S  C  T  S  L  M  I  Q  S  L  L  H  L  R  N  F  P  G  L  R  L  K  S  *  A  E  A  A  M  V  H  H  T  G  Q  H  W  R  M  G  C  F  *  L  *  N  G  *  E  K  E  W  R  S  R  G  R  I  L  R  R  R  L  K  S  L  L  I  L  G  I  L  M  *  *  D  *  E  V  T  T  G  V  P  H  N  M  R  S  S  F  F  R  I  I  Y  L  L  E  V  L  Q  V  S  S  M  :  I  G  L  V  E  K  V  H  H  *  P  G  P  K  D  S  K  Y  Q  L  M  L  H  V  A  *  T  I  S  I  L  I  G  R  F  H  M  E  I  L  K  Q  P  T  S  C  W  M  G  L  T  L  M  Q  G  L  Q  I  T  A  F  T  A  S  *  L  K  P  A  Q  *  N  R  F  L  M  Q  E  F  W  V  I  V  P  L  S  W  L  H  Q  R  N  H  C  L  P  S  N  Q  M  Y  M  L  L  E  L  F  C  W  S  C  L  V  E  N  V  Q  V  M  L  S  L  A  K  M  A  E  *  T  *  L  T  G  *  G  *  R  W  Q  K  V  V  A  L  I  V  L  I  T  F  C  H  L  S  W  K  I  Q  Q  W  R  S  K  *  R  R  F  L  V  *  L  C  D  A  F  V  L  Y  L  R  D  L  V  S  R  L  Y  M  R  T  F  R  L  Y  S  L  Y  S  S  G  F  A  L  L  W  E  S  N  S  S  L  T  S  L  L  S  S  R  I  S  T  V  S  V  *  M  G  L  V  L  L  T  I  V  C  C  K  L  G  H  I  *  C  V  N  N  L  F  S  P  F  G  L  *  A  S  N  V  C  Q  F  F  G  V  N  T  C  D  F  I  F  K  V  L  Q  H  I  F  T  E  H  L  Q   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02SLe0018B07.1" strand="-"/>
                <serials PGL_serial="17" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="93205" stop="92866"/>
                    <exon start="92245" stop="91662"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>921</number_coding_nucleotides>
                  <number_encoded_amino_acids>307</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>SPDRLAGELYFLDDTISFTPEELSRAPAEVLGRSSHGTSYRATLENGLLLTVKWLREGVAKQRKDFAKEAKEFTNIRHPNVVGLRGYYWGPTQHEKLILSDYISPGSLASFLYDRPGRKGPPLTWPQRLKISVDVARGLNYLHFDREVPHGNLKATNILLDGPDLNARVADYCLHRLMTQAGTIEQILDAGVLGYRAPELAASKKPLPSFKSDVYAFGVILLELLSGKCAGDVVSGEDGGVDLTDWVRLKVAEGRSSDCFDNVLSPELENPAMEKQMKEVLGIAVRCIRSISERPGIKTIYEDLSSI*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="18" PGL_strand="+" PGL_start="125537" PGL_stop="131617"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="125537" e_stop="125628"/>
            <exon e_start="127299" e_stop="128567"/>
            <exon e_start="131357" e_stop="131417"/>
            <exon e_start="131510" e_stop="131617"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.947" acc_prob="0.969" e_score="1.000"/>
          <exon-intron don_prob="0.983" acc_prob="0.986" e_score="0.990"/>
          <exon-intron don_prob="0.988" acc_prob="0.000" e_score="1.000"/>
          <exon-only e_score="0.991"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="125537" e_stop="125628" e_length="92"/>
          </exon>
          <intron i_serial="1" don_prob="0.947" acc_prob="0.969">
            <gDNA_intron_boundary i_start="125629" i_stop="127298" i_length="1670"/>
          </intron>
          <exon e_serial="2" e_score="0.990">
            <gDNA_exon_boundary e_start="127299" e_stop="128567" e_length="1269"/>
          </exon>
          <intron i_serial="2" don_prob="0.983" acc_prob="0.986">
            <gDNA_intron_boundary i_start="128568" i_stop="131356" i_length="2789"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="131357" e_stop="131417" e_length="61"/>
          </exon>
          <intron i_serial="3" don_prob="0.988" acc_prob="0.000">
            <gDNA_intron_boundary i_start="131418" i_stop="131509" i_length="92"/>
          </intron>
          <exon e_serial="4" e_score="0.991">
            <gDNA_exon_boundary e_start="131510" e_stop="131617" e_length="108"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="125537" stop="125628"/>
              <exon start="127299" stop="127904"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E321617" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="125555" stop="125628"/>
              <exon start="127299" stop="127802"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E273175" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="125557" stop="125628"/>
              <exon start="127299" stop="127912"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E316481" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="125557" stop="125628"/>
              <exon start="127299" stop="127792"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E312116" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="125592" stop="125628"/>
              <exon start="127299" stop="127786"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E338483" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="127471" stop="128268"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E737524" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="127983" stop="128567"/>
              <exon start="131357" stop="131417"/>
              <exon start="131510" stop="131617"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E689238" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="127988" stop="128567"/>
              <exon start="131357" stop="131376"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E326436" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="127988" stop="128494"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E325925" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="128006" stop="128567"/>
              <exon start="131357" stop="131417"/>
              <exon start="131510" stop="131576"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E547996" strand="-"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="18" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>TTTGGTCGAGGCCCTGTGTGCCACTTCTTCCATCTCCGCCAGTGCCGCACTTGGTTTCTTCTGCGGTTTTTCATCTTCACTTTCAACCAAAG : GGAGTACAACAACAACAAAAAGGCTCTGATACTTCATTTGATTGGATGTATAGGAGCATATCATTTTGGTGGATGTACGCGTAAGCAAGAGAAACATAATTCTTTTATATTAGTGTGTGGCTCAATTGATATGCTGATAAAAAGTTATCTTTCTGGTTGCAAAGAAACTTCTTTTGCAACCTCTGTCTCATCTGAGATCACGAAACGAGCTTCATGCGACCAGGGTTCTGGTGCTGAATTGTCAGAAATGAGTCCAGAAAAAGATAAATATCCTATTGATGTCTGTATGGAATCTGATTCAAAGGATGGTGATCCTTGTTCCTTAAACAGTCTAGATGGTCCACGACCTTCAACTTTCAGTGCCATGCCTGGAAGTTTAAAGCCCATAGTATATCGTAGGAAAAAGTTCAAACAAAACCCTCGTCCTACTTTCTTCATTGAACCATCAGCTGAAGTTAGGCCTAGCAATGGATGCCCTTCTGAGCTCTGTTCTGAAGTCCATTCAGGAACTTTGAAGGAAGGCATAGTTGCTGCTGAGAAATTAGCTACAGCAACTCCTGTTCTTCTGCCTGCTGAGTGTAACAGAGGAAACCTTCTATCTAAATCAAATTCTTGTGATGGTAGACCTGAAGGGGAAGAGCAGTGCTCTGAAGCAGCATCAAGAAGTGATATGCAAAGGACTTCAAATGTTTGCATAAATGATAGCCATTCGTCATCAAAGTGTAATTTGGATTTTGGGTCTTCTTCATTGAAGACGCTTGTGGATGATGCTGGTGAGTGCTCCTCATCTGGTGCTTTATTTCCTGAAAGATTGGGTAATAATATGCCAGAAAAGGATATATGCACAGCAATTCTTAGAGGTTATGGGTTGCTTGAAAATGTTGTGGTTACAAAACTCGGAGCATCAACAGAAGACTTTTATACCAGTTCTGACAACTGCTGTTTAATCTCATGCAAAGCCTGTGATTGTTCAGAATCTACAGTGAAGATGCTAATCTGTGATAACTGTGATGATGCATATCATTTATCGTGCTGCAAACCCCATAAAAAGATAGCACCCGAGGATGAGTGGTTTTGCCAAACTTGTTTGATTAAGAAGCAGAGAGTGCTCAAGAAATCATCTTGTAATGAGAGTTCTAGCAATTCTCCATCTGAAGGTGAATCAGGACCTACAGCTCTCATGTTGAAGGACACCGGTTATAAAACTCGTGTTCGTATTAGCAAAAAGTATCAAGCTGAGATTCCTGACTGGACAGGTCCAGCGACAGA : TGACGCTGGTTGTAGTGGTGAACCATTTGAAATCACACCTTCAGAGAATCTCTGCTTGCCT : AAACAATCTTCTAACGAACATATGAGGATTAGCTCTATTGGCAATTGGCTTCAGTGCCGGCAGGTCAACGAAGGTTTTGGGAAACGTGTGGATGGAAGTATCTGTGGG</gDNA_template>
            <first_frame> F  G  R  G  P  V  C  H  F  F  H  L  R  Q  C  R  T  W  F  L  L  R  F  F  I  F  T  F  N  Q  R :   E  Y  N  N  N  K  K  A  L  I  L  H  L  I  G  C  I  G  A  Y  H  F  G  G  C  T  R  K  Q  E  K  H  N  S  F  I  L  V  C  G  S  I  D  M  L  I  K  S  Y  L  S  G  C  K  E  T  S  F  A  T  S  V  S  S  E  I  T  K  R  A  S  C  D  Q  G  S  G  A  E  L  S  E  M  S  P  E  K  D  K  Y  P  I  D  V  C  M  E  S  D  S  K  D  G  D  P  C  S  L  N  S  L  D  G  P  R  P  S  T  F  S  A  M  P  G  S  L  K  P  I  V  Y  R  R  K  K  F  K  Q  N  P  R  P  T  F  F  I  E  P  S  A  E  V  R  P  S  N  G  C  P  S  E  L  C  S  E  V  H  S  G  T  L  K  E  G  I  V  A  A  E  K  L  A  T  A  T  P  V  L  L  P  A  E  C  N  R  G  N  L  L  S  K  S  N  S  C  D  G  R  P  E  G  E  E  Q  C  S  E  A  A  S  R  S  D  M  Q  R  T  S  N  V  C  I  N  D  S  H  S  S  S  K  C  N  L  D  F  G  S  S  S  L  K  T  L  V  D  D  A  G  E  C  S  S  S  G  A  L  F  P  E  R  L  G  N  N  M  P  E  K  D  I  C  T  A  I  L  R  G  Y  G  L  L  E  N  V  V  V  T  K  L  G  A  S  T  E  D  F  Y  T  S  S  D  N  C  C  L  I  S  C  K  A  C  D  C  S  E  S  T  V  K  M  L  I  C  D  N  C  D  D  A  Y  H  L  S  C  C  K  P  H  K  K  I  A  P  E  D  E  W  F  C  Q  T  C  L  I  K  K  Q  R  V  L  K  K  S  S  C  N  E  S  S  S  N  S  P  S  E  G  E  S  G  P  T  A  L  M  L  K  D  T  G  Y  K  T  R  V  R  I  S  K  K  Y  Q  A  E  I  P  D  W  T  G  P  A  T  D :   D  A  G  C  S  G  E  P  F  E  I  T  P  S  E  N  L  C  L  P  :  K  Q  S  S  N  E  H  M  R  I  S  S  I  G  N  W  L  Q  C  R  Q  V  N  E  G  F  G  K  R  V  D  G  S  I  C  G </first_frame>
            <second_frame>  L  V  E  A  L  C  A  T  S  S  I  S  A  S  A  A  L  G  F  F  C  G  F  S  S  S  L  S  T  K   : G  S  T  T  T  T  K  R  L  *  Y  F  I  *  L  D  V  *  E  H  I  I  L  V  D  V  R  V  S  K  R  N  I  I  L  L  Y  *  C  V  A  Q  L  I  C  *  *  K  V  I  F  L  V  A  K  K  L  L  L  Q  P  L  S  H  L  R  S  R  N  E  L  H  A  T  R  V  L  V  L  N  C  Q  K  *  V  Q  K  K  I  N  I  L  L  M  S  V  W  N  L  I  Q  R  M  V  I  L  V  P  *  T  V  *  M  V  H  D  L  Q  L  S  V  P  C  L  E  V  *  S  P  *  Y  I  V  G  K  S  S  N  K  T  L  V  L  L  S  S  L  N  H  Q  L  K  L  G  L  A  M  D  A  L  L  S  S  V  L  K  S  I  Q  E  L  *  R  K  A  *  L  L  L  R  N  *  L  Q  Q  L  L  F  F  C  L  L  S  V  T  E  E  T  F  Y  L  N  Q  I  L  V  M  V  D  L  K  G  K  S  S  A  L  K  Q  H  Q  E  V  I  C  K  G  L  Q  M  F  A  *  M  I  A  I  R  H  Q  S  V  I  W  I  L  G  L  L  H  *  R  R  L  W  M  M  L  V  S  A  P  H  L  V  L  Y  F  L  K  D  W  V  I  I  C  Q  K  R  I  Y  A  Q  Q  F  L  E  V  M  G  C  L  K  M  L  W  L  Q  N  S  E  H  Q  Q  K  T  F  I  P  V  L  T  T  A  V  *  S  H  A  K  P  V  I  V  Q  N  L  Q  *  R  C  *  S  V  I  T  V  M  M  H  I  I  Y  R  A  A  N  P  I  K  R  *  H  P  R  M  S  G  F  A  K  L  V  *  L  R  S  R  E  C  S  R  N  H  L  V  M  R  V  L  A  I  L  H  L  K  V  N  Q  D  L  Q  L  S  C  *  R  T  P  V  I  K  L  V  F  V  L  A  K  S  I  K  L  R  F  L  T  G  Q  V  Q  R  Q   : M  T  L  V  V  V  V  N  H  L  K  S  H  L  Q  R  I  S  A  C  L :   N  N  L  L  T  N  I  *  G  L  A  L  L  A  I  G  F  S  A  G  R  S  T  K  V  L  G  N  V  W  M  E  V  S  V   </second_frame>
            <third_frame>   W  S  R  P  C  V  P  L  L  P  S  P  P  V  P  H  L  V  S  S  A  V  F  H  L  H  F  Q  P  K  :  G  V  Q  Q  Q  Q  K  G  S  D  T  S  F  D  W  M  Y  R  S  I  S  F  W  W  M  Y  A  *  A  R  E  T  *  F  F  Y  I  S  V  W  L  N  *  Y  A  D  K  K  L  S  F  W  L  Q  R  N  F  F  C  N  L  C  L  I  *  D  H  E  T  S  F  M  R  P  G  F  W  C  *  I  V  R  N  E  S  R  K  R  *  I  S  Y  *  C  L  Y  G  I  *  F  K  G  W  *  S  L  F  L  K  Q  S  R  W  S  T  T  F  N  F  Q  C  H  A  W  K  F  K  A  H  S  I  S  *  E  K  V  Q  T  K  P  S  S  Y  F  L  H  *  T  I  S  *  S  *  A  *  Q  W  M  P  F  *  A  L  F  *  S  P  F  R  N  F  E  G  R  H  S  C  C  *  E  I  S  Y  S  N  S  C  S  S  A  C  *  V  *  Q  R  K  P  S  I  *  I  K  F  L  *  W  *  T  *  R  G  R  A  V  L  *  S  S  I  K  K  *  Y  A  K  D  F  K  C  L  H  K  *  *  P  F  V  I  K  V  *  F  G  F  W  V  F  F  I  E  D  A  C  G  *  C  W  *  V  L  L  I  W  C  F  I  S  *  K  I  G  *  *  Y  A  R  K  G  Y  M  H  S  N  S  *  R  L  W  V  A  *  K  C  C  G  Y  K  T  R  S  I  N  R  R  L  L  Y  Q  F  *  Q  L  L  F  N  L  M  Q  S  L  *  L  F  R  I  Y  S  E  D  A  N  L  *  *  L  *  *  C  I  S  F  I  V  L  Q  T  P  *  K  D  S  T  R  G  *  V  V  L  P  N  L  F  D  *  E  A  E  S  A  Q  E  I  I  L  *  *  E  F  *  Q  F  S  I  *  R  *  I  R  T  Y  S  S  H  V  E  G  H  R  L  *  N  S  C  S  Y  *  Q  K  V  S  S  *  D  S  *  L  D  R  S  S  D  R  :  *  R  W  L  *  W  *  T  I  *  N  H  T  F  R  E  S  L  L  A   : *  T  I  F  *  R  T  Y  E  D  *  L  Y  W  Q  L  A  S  V  P  A  G  Q  R  R  F  W  E  T  C  G  W  K  Y  L  W  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02SLe0018B07.1" strand="+"/>
                <serials PGL_serial="18" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="125537" stop="125628"/>
                    <exon start="127299" stop="128567"/>
                    <exon start="131357" stop="131417"/>
                    <exon start="131510" stop="131617"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>1530</number_coding_nucleotides>
                  <number_encoded_amino_acids>510</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>FGRGPVCHFFHLRQCRTWFLLRFFIFTFNQREYNNNKKALILHLIGCIGAYHFGGCTRKQEKHNSFILVCGSIDMLIKSYLSGCKETSFATSVSSEITKRASCDQGSGAELSEMSPEKDKYPIDVCMESDSKDGDPCSLNSLDGPRPSTFSAMPGSLKPIVYRRKKFKQNPRPTFFIEPSAEVRPSNGCPSELCSEVHSGTLKEGIVAAEKLATATPVLLPAECNRGNLLSKSNSCDGRPEGEEQCSEAASRSDMQRTSNVCINDSHSSSKCNLDFGSSSLKTLVDDAGECSSSGALFPERLGNNMPEKDICTAILRGYGLLENVVVTKLGASTEDFYTSSDNCCLISCKACDCSESTVKMLICDNCDDAYHLSCCKPHKKIAPEDEWFCQTCLIKKQRVLKKSSCNESSSNSPSEGESGPTALMLKDTGYKTRVRISKKYQAEIPDWTGPATDDAGCSGEPFEITPSENLCLPKQSSNEHMRISSIGNWLQCRQVNEGFGKRVDGSICG</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="19" PGL_strand="+" PGL_start="132106" PGL_stop="135576"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="132106" e_stop="132196"/>
            <exon e_start="133453" e_stop="133500"/>
            <exon e_start="134965" e_stop="135576"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.995" acc_prob="0.991" e_score="1.000"/>
          <exon-intron don_prob="0.979" acc_prob="0.987" e_score="1.000"/>
          <exon-only e_score="0.997"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="132106" e_stop="132196" e_length="91"/>
          </exon>
          <intron i_serial="1" don_prob="0.995" acc_prob="0.991">
            <gDNA_intron_boundary i_start="132197" i_stop="133452" i_length="1256"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="133453" e_stop="133500" e_length="48"/>
          </exon>
          <intron i_serial="2" don_prob="0.979" acc_prob="0.987">
            <gDNA_intron_boundary i_start="133501" i_stop="134964" i_length="1464"/>
          </intron>
          <exon e_serial="3" e_score="0.997">
            <gDNA_exon_boundary e_start="134965" e_stop="135576" e_length="612"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="132106" stop="132196"/>
              <exon start="133453" stop="133500"/>
              <exon start="134965" stop="135576"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E538073" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="135116" stop="135576"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E268418" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="135190" stop="135557"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E215519" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="19" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>GGCGCCGCTATTTGAAGTTCAAACAGATAATTGGGAGTGCTTCCGTTCTGTCCTTTGGGATCCAGCTCACGCCGATTGTGCTGTACCTCAA : GAACTAGAGACGGAGGAAGTTCTGAAGCAATTGAAGTATATGGAGATG : TTGAAACACCGGCTGGTAGTTAAGAGGCGCAAATTGAATCAAACCTCAGGTGCTGGCTCACGGTTCTTGACAAAGAAATGAGAAGATACAGGCTTCATGTACGGAAATGTTCATCTTGTACATTTAAGCATAAAAATTTTGGATAATTGGAGTAGTACTACATGAGATTTTCATCACAGTATTCTGATTTAATTGCTTCAGAAACATAGTTGTACAATTTAGAAGGTGCAAGGAATCAGCTGCAAAGTCGACTTGATCTTTCCTGGCTTCACTTCATCACAGTACGCTGATGTAATTGCTTCAGAAACATAATTGTACAATTTAGTAGGCGCAAGGAATCAGCTGCAAACTCGACTTGATCTTTCCTGGCTTCACTTCATCTCTTAGTCCATCTATCTCTTCTCTTTTACGTTTCGCATTGTCAGGGCTGACAAATTAACATTTCACTTTCTTCGCCCTTATGTCACATTTCTGTAATGCCTTGATGAATTTGTGAGGCCCTGGTTTAGTCATTGCAGGATAGAGAGCAGGTTGTGAGGATATGGGGAATTTGTACTCGTGATGACTTAATGTTAGTGCATATTTATGTTTCTATTTTTCTCTCTGGTATAA</gDNA_template>
            <first_frame> G  A  A  I  *  S  S  N  R  *  L  G  V  L  P  F  C  P  L  G  S  S  S  R  R  L  C  C  T  S   : R  T  R  D  G  G  S  S  E  A  I  E  V  Y  G  D   : V  E  T  P  A  G  S  *  E  A  Q  I  E  S  N  L  R  C  W  L  T  V  L  D  K  E  M  R  R  Y  R  L  H  V  R  K  C  S  S  C  T  F  K  H  K  N  F  G  *  L  E  *  Y  Y  M  R  F  S  S  Q  Y  S  D  L  I  A  S  E  T  *  L  Y  N  L  E  G  A  R  N  Q  L  Q  S  R  L  D  L  S  W  L  H  F  I  T  V  R  *  C  N  C  F  R  N  I  I  V  Q  F  S  R  R  K  E  S  A  A  N  S  T  *  S  F  L  A  S  L  H  L  L  V  H  L  S  L  L  F  Y  V  S  H  C  Q  G  *  Q  I  N  I  S  L  S  S  P  L  C  H  I  S  V  M  P  *  *  I  C  E  A  L  V  *  S  L  Q  D  R  E  Q  V  V  R  I  W  G  I  C  T  R  D  D  L  M  L  V  H  I  Y  V  S  I  F  L  S  G  I  </first_frame>
            <second_frame>  A  P  L  F  E  V  Q  T  D  N  W  E  C  F  R  S  V  L  W  D  P  A  H  A  D  C  A  V  P  Q  :  E  L  E  T  E  E  V  L  K  Q  L  K  Y  M  E  M  :  L  K  H  R  L  V  V  K  R  R  K  L  N  Q  T  S  G  A  G  S  R  F  L  T  K  K  *  E  D  T  G  F  M  Y  G  N  V  H  L  V  H  L  S  I  K  I  L  D  N  W  S  S  T  T  *  D  F  H  H  S  I  L  I  *  L  L  Q  K  H  S  C  T  I  *  K  V  Q  G  I  S  C  K  V  D  L  I  F  P  G  F  T  S  S  Q  Y  A  D  V  I  A  S  E  T  *  L  Y  N  L  V  G  A  R  N  Q  L  Q  T  R  L  D  L  S  W  L  H  F  I  S  *  S  I  Y  L  F  S  F  T  F  R  I  V  R  A  D  K  L  T  F  H  F  L  R  P  Y  V  T  F  L  *  C  L  D  E  F  V  R  P  W  F  S  H  C  R  I  E  S  R  L  *  G  Y  G  E  F  V  L  V  M  T  *  C  *  C  I  F  M  F  L  F  F  S  L  V  * </second_frame>
            <third_frame>   R  R  Y  L  K  F  K  Q  I  I  G  S  A  S  V  L  S  F  G  I  Q  L  T  P  I  V  L  Y  L  K :   N  *  R  R  R  K  F  *  S  N  *  S  I  W  R  C :   *  N  T  G  W  *  L  R  G  A  N  *  I  K  P  Q  V  L  A  H  G  S  *  Q  R  N  E  K  I  Q  A  S  C  T  E  M  F  I  L  Y  I  *  A  *  K  F  W  I  I  G  V  V  L  H  E  I  F  I  T  V  F  *  F  N  C  F  R  N  I  V  V  Q  F  R  R  C  K  E  S  A  A  K  S  T  *  S  F  L  A  S  L  H  H  S  T  L  M  *  L  L  Q  K  H  N  C  T  I  *  *  A  Q  G  I  S  C  K  L  D  L  I  F  P  G  F  T  S  S  L  S  P  S  I  S  S  L  L  R  F  A  L  S  G  L  T  N  *  H  F  T  F  F  A  L  M  S  H  F  C  N  A  L  M  N  L  *  G  P  G  L  V  I  A  G  *  R  A  G  C  E  D  M  G  N  L  Y  S  *  *  L  N  V  S  A  Y  L  C  F  Y  F  S  L  W  Y   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02SLe0018B07.1" strand="+"/>
                <serials PGL_serial="19" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="132107" stop="132196"/>
                    <exon start="133453" stop="133500"/>
                    <exon start="134965" stop="135045"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>216</number_coding_nucleotides>
                  <number_encoded_amino_acids>72</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>APLFEVQTDNWECFRSVLWDPAHADCAVPQELETEEVLKQLKYMEMLKHRLVVKRRKLNQTSGAGSRFLTKK*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
  </PGL_module>
</GTH_output>
<!--
$ general statistics:
$ 236 chains have been computed
$ 
$ memory statistics:
$ 263624 bytes spliced alignments in total
$ 73 spliced alignments have been stored
$ 3611 bytes was the average size of a spliced alignment
$ 27648 bytes predicted gene locations in total
$ 19 predicted gene locations have been stored
$ 1455 bytes was the average size of a predicted gene location
$ 2 megabytes was the average size of the backtrace matrix
$ 265 backtrace matrices have been allocated
$ 
$ date finished: 2009-12-01 10:47:08
-->
